##maf version=1 scoring=roast.v3.3
a score=1365.000000
s hg38.chr19_GL949751v2_alt        0 1 +  1002683 T
s panTro4.chr19             58936492 1 + 63644993 T
i panTro4.chr19             N 0 C 0
s rheMac3.chr19             59858196 1 + 64156825 T
i rheMac3.chr19             N 0 C 0
s macFas5.chr19             54875173 1 + 59248254 T
i macFas5.chr19             N 0 C 0
s papAnu2.chr19             46998026 1 + 51301725 T
i papAnu2.chr19             N 0 C 0
s chlSab2.chr6              46710962 1 + 50890351 T
i chlSab2.chr6              N 0 C 0

a score=37821.000000
s hg38.chr19_GL949751v2_alt         1 15 +   1002683 GTCAGTTGCTTGGTG
s panTro4.chr19              58936493 15 +  63644993 GTCAGTTGCTTGGTG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102564661 15 - 106955855 GTCAGTTGCTTGGTG
i nomLeu3.chr10             N 0 C 0
s rheMac3.chr19              59858197 15 +  64156825 GTCAGTTGCTTGGTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54875174 15 +  59248254 GTCAGTTGCTTGGTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46998027 15 +  51301725 GTCAGTTGCTTGGTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46710963 15 +  50890351 GTCAGTTGCTTGGTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45281161 15 +  49145316 GTCATTTGCTTGATG
i calJac3.chr22             N 0 C 0

a score=207591.000000
s hg38.chr19_GL949751v2_alt        16 86 +   1002683 TGGTGAAGC--AATGAGAG--TGTTTTTTTCG-------GGGGAGGAGGTGTCAGATAGATCAAGAATTTATAATTAGCATAAGAAATGTACTTCTT
s panTro4.chr19              58936508 86 +  63644993 TGGTGAAGC--AATGAGAG--TGTTTTTTTGG-------GGGGAGGAGGTGTCAGATAGATCAAGAATTTATAATTAGCATAAGAAATGTACTTCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55798183 66 +  60714840 TGGTGAAGC--AATGAGAG--TGTTTTTTTGA-------GGAGAGGAGGTGTCAGATAGATCAAGAATT--------------------TACTTCTT
i ponAbe2.chr19             N 0 C 0
s nomLeu3.chr10             102564676 86 - 106955855 TGGTGAAGC--AATGAGAG--TGTTTTTTTGC-------GGGCAGGAGGTGTCGGATAGATCAAGAATTTATAATAAGCATAAGAAATGTACTTCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59858212 87 +  64156825 TGGTGAAGC--AATGAGAGG-TTTTTTTTCGG-------GGGGAGGAGGTGTcagatagatcaagaatttataataagcatcagaaatgtacttctc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54875189 87 +  59248254 TGGTGAAGC--AATGAGAGG-TTTTTTTTGGG-------GGGGAGGAGGTGTCAGATAGATCAAGAATTTATAATAAGCATCAGAAATGTACTTCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46998042 87 +  51301725 TGGTGAAGC--AATGAGAGG-ttttttttGCG-------GGGGAGGAGGTGTCAGATAGTTCAAGAATTTATAATAAGCATCAGAAATGTACTTCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46710978 88 +  50890351 TGGTGAAGC--AATGAGAGGTTTTTTTTTGCG-------GGGGAGGAGGTGTCAGATAGTTCAAGAATTTATAATAAGCATCAGAAATGTACTTCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45281176 91 +  49145316 TGGTGAAGCCAAATGAGAG--TGATTTTTGGGGGGGGCTGGGGAGGAGGTGTCAGA----TCAGGAATTTAAAATAAACGTAAGAAATGTACTTCTT
i calJac3.chr22             C 0 I 462

a score=5096.000000
s hg38.chr19_GL949751v2_alt       102 2 +   1002683 AA
s panTro4.chr19              58936594 2 +  63644993 AA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55798249 2 +  60714840 AA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102564762 2 - 106955855 AA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59858299 2 +  64156825 aa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54875276 2 +  59248254 AA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46998129 2 +  51301725 AA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46711066 2 +  50890351 AA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45281267 462 +  49145316 I

a score=2656698.000000
s hg38.chr19_GL949751v2_alt       104  990 +   1002683 CAAAGccagcctgggcaacatagtgagattcccatctct--acaaaa--aaaaaaaaaaaaaaa-----------ttagcccagtgt-ggtggtgcacacctgtggccccagctacttgggaggctgaggcaggaggattgcttgagcctgggaggtcaaggctgcagtgagctatgattgtgccactgcactccagtctgtgtgac-agtgcaagaccctgtctcaaaaaataaaaagaaaaaaaaagaaaCATACTAAAA-----AAGGACACATATTAGCAATATGAAACAAGAACAATTTTCCATAAAGCAAGAGGCTTATGGAAATAAAAAGTATAAAAATACATGATGGTAAA---AAATATATAACATTATCCTCTAACAGAATAGGCAGTAGGGTgggtgccgtggctcacgcctgtaatcccagcactttgagaggctgaggtgggatgatcacttgagaccaggagttcgagaccagtctgggcaacatggtgagaccgtgtctcttt-aaaaaaaaaaaaaaaaAAGGC---------------AGAATTGATACAGCTGAAG--AAAAATGAACAAGTAAGAAAATGTGGTGGAGGAACTTCTCCAGGAAGCTGATATAATTATATTAAGATCAGAAAAAAT---AAGAGAAAAGTCATCGTACGAT---------ATAAGGGACAGGTGTTTCTCAAAATCCAAAATCTTCTCTGCTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcgcccaggctagagtgcagtggtgcaatctcagctcactgcaaactccacctcccagattcaagtgattctcctgcctcagcctccccagtagct-ggattacaggtgctcgccaccacacccagctaatttttgaatttttagtagagacggggtttcaccatgttggtcaggctggtctcaaactcctgacctc--gtgattcgcccacctcagcctcccaaagtgctgggattacaggcctgagccaccgcacccagcc
s panTro4.chr19              58936596  986 +  63644993 CAAAGccagcctgggcaacatagtgagattcccatctct--acaaaa--aaaaaaaaaaaaaaa-------aaaattagcccagtgt-ggttgtgcacacctgtggccccagctactcgggaggctgaggcaggaggattgcttgagcctgggaggtcaaggctgcagtgagctatgattgtgccactgcactccagtctgggtgac-agtgcaagaccctgtctcaaaaaataaaaagaaaaaaaaagaaaCATAcaaaaa-----aaggacacatattagcaatgtgaaacaagaacaattatccataaagcaagaggcttatggaaataaaaagtataaaaatacatgatggtaaa---aaatatataacattatcctctaacagaataggcagtagggtgggtgccgtggctcacgcctgtaatcccagcactttgagaggctgaggtgggatgatcacttgagaccaggagttcgagaccagtctgggcaacatggtgagaccgtgtctctt---------aaaaaaaaaaaggc---------------agaattgatacagctgaag--aaaaatgaacaagtaagaaaatgtggtggaggaacttctccaggaagctgatataattatattaacatcagaaaaaat---aagagaaaagccatcgtaagat---------ataagggacagCTGTTTCTCAAAATCCAAAATCTTCTCTGCTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcgccccggctggagtgcagtggtgcgatctcagctcactgcaaactccacctcccagattcaagcgattctcctgcctcagcctccccagtagct-ggattacaggtgctcgccaccacacccagctaatttttgaatttttagtagagacggggtttccccatgttggtcaggctggtctcaaactcctgacctc--gtgattcgcccacctcagcctcccaaagtgctgggattacaggcctgagccaccgcacccggcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55798251 1006 +  60714840 AAAAGccagcctgggcaacatagtgagattcccatctct--actaaa--aaaaaaaaaaaagaaaaagaaaaaaattagcccagtgt-ggttgtgcacacctgtggccccagctactcgggaggctgaggcaggaggattgcttgagcctgggaggtcacggctgcagtgagctgtgattgtgccactgcactccagtctgggtgac-agtgcaagaccctgtctcaaaaaataaaaag-aaaaaaaagaaaCATACTAAAAAAGATAAGGACACATGTtaacaatgtgaagcaagaacaattatccataaagcaaggggcttatggaaataaaaagtataaaaatacatgatagtaaa---aaatatataacattatcctctaatacaataggcagtagggtgggtgccgtggctcacgcctgtaatcccagcactttgagaggctgaggtgggatgatcacttgagaccaggagttcaagaccagtctgggcaacatgatgagaccgtgtctcttt-aaaaaaaaaaaaaaaaaaggc------------agtagaattgatacagctgaagaaaaaaatgaacaagtgagaagatgtagtggaggaacttctccaggaagctgatcta-----attaatatcagaaaaaataagaagagaaaagccatcgtaagat---------gtaaggaacagCTGCTTCTCAAAATCCAAAATCTTCTCTACTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcgcccaggctagagtgcagtggtgcaatctcagctcactgcaaactccacctcccaaattcaagcgattctcctgcctcagcctccccagtagct-ggattacaggggctcgccaccacacccagctaatttttgaatttttagtaagagatgggtttcaccatgttggtcagg-tggtctc-aactcctgacctc--gtgaatcacccacctcagcctcccaaagtgctgggattacaggactgagccactgcacccagcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102564764  997 - 106955855 AAAAGccagcctgggcaacatagtgagattcccatctct--accaaa--aaaaaaaaa-----------------ttagcccagcgt-ggtggtgcacacctgtggccccagctactcgggaggctgaggcaggaggattgcttgagccagggaggtcaaggctgcagtgagctatgattgtgccactgcactccagtctgggtgac-agtgcaagaccctgtctcaaaaaataaaaag-aaaaaaaagaaaCatactaaaaaagataaggacacatgctagcaatgtgaagcaagaacaattatccataaagcaaggggcttctggaactaaaaagtataaaaatacacgatggttaa---aaatatataacattatcctctaacagaataggcagtagggtgggtgccatggctcacgcctataatcccagcagtttgagaggctgaggtgggatgatcacttcagaccaggagttcgagaccagtctgggcaacatggtgagaccgtgtgtcttt-aaaaaaaaaaaaaaaaaaggc---------------agaattgatacagctgaag--aaaaatgaacaagtaagaaaatgtggtggaggaacttctccaggaagctgatataattatattaacatcagaaaaaat---aagagaaaagccatcgtaagatatatataagataagagACAGCTGTTTCTCAAAAACCAAAATCTTCTCTGCTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcgcccaggctagagtgcagtggtgcaatctcagctcactgcaaactccacctcccagattcaagcgattcttctgcctcagcctccccagtagct-ggattacaggtgctcgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcaaattcctgacctg--gtgattcacccacctcagcctcccaaagtgctgggattacaggcctgagccaccacacccagcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59858301  984 +  64156825 aaaagccagcctgggcaacatggcgagattcccatttct--accaaa-----------aaaaaa-----------ttagcccagcgt-ggtggtgcacacatgtggccccagctacttgggaggctgaggcaggaggattgcttgagcctgggaggttaaggttgcagtgagctatgattgcgccactgcactccagtctgggtgac-agtgcaagaccctgtctcaaaaaataaaaag-----aaaataaacatactaaaaaagataaggacacatgttagcaatgtgaaacaa-aacaattatccataaagcaaggggcttatggaaataaaaagtataaaaa-atatgatggtaaa---atatatataacagtatcctctgatagaataggcagtagggtgggtgccgtggctcacgcctgtaatcccagcactttgagaggctcaggtgggacgatcccttgagaccaggaatttgagaccagtctgggcaacatggtgagactgtgtctcttt-aaaaaaaaaaaaaaaaaaggg-----------cagtagaattgatacagctgaag--aaaaatgaacaagtaagaagatgtggtggaggaacttttccaggaagctgatataattatattaatatcagaaagaat---aggagaaaagccatcgtaagat---------ataagggacagCTGTGTCTGAAAATCCAAACTCTTCTCTGCTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcacccaggctggagtgcagtggtacaatctcgactcatggcaaccttcacctcccagattcaagcgattctcctgcctcagcctcccaagtacctgggattataggcgctcgcaaccacacccaggtaatttttgaatttttagtacagacggggtttcaccatattggtcaggctggtctcaaactcctgacctt--gtgattcgcccacctcagcttcccaatgtgctgagattactggcatgagccaccacgcctggcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54875278  985 +  59248254 AAAAGccagcctgggcaacatagcgagattcccatttct--accaaa-----------aaaaaa-----------ttagcccagcgt-ggtggtgcacacatgtggccccagctacttgggaggctgaggcaggaggattgcttgagcctgggaggttaaggttgcagtgagctatgattgcgccactgcactccagtctgggtgac-agtgcaagaccctgtctcaaaaaataaaaag-----aaaataaaCatactaaaaaagataaggacacatgttagcaatgtgaaacaa-aacaattatccataaagcaagggtcttatggaaataaaaagtataaaaa-atatgatggtaaa---atatatataacagtatcctctgatagaataggcagtagggtgggtgccgtggctcacgcctgtaatcccagcactttgagaggctgaggtgggacgatcccttgagaccaggaatttgagaccagtctgggcaacatggtgagactgtgtctctttaaaaaaaaaaaaaaaaaaaggg-----------cagtagaattgatacagctgaag--aaaaatgaacaagtaagaagatgtggtggaggaacttttccaggaagctgatataattatattaatatcagaaagaat---aggagaaaagccatcgtaagat---------ataagggacagCTGTGTCTGAAAATCCAAACTCTTCTCTGCTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcacccaggctggagtgcagtggtacaatctcgactcatggcaaccttcacctcccagattcaagcgattcccctgcctcagcctcccaagtacctgggattataggcgctcgcaaccacacccaggtaatttttgaatttttagtacagacggggtttcaccatattggtcaggctggtctcaaactcctgacctt--gtgattcgcccacctcagcttcccaatgtgcttagattactggcatgagccaccacgcctggcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46998131 1000 +  51301725 Aatagccagcctgggcaacatagcgagattcccatctct--accaaa--aaaaaccccaaaaaa-----------ttagcccaccgt-ggtggtgcacacatgtggccccagctacttgggaggctgaggcaggaggattgcttgaggctgggaggttaaggctgcagtgagctatgattgcgccactgcactccagtctgggtgac-agtgcaagaccctgtctcaaaaaataaaaag-----aaaataaacatactaaaaaaGATAAGGACAC--GTTAGCAATGTGAAATAAGAACAATTATCCATAAAGCAAGGGgcttatggaaataaaaagtataaaaatatatgatggtaaa---aaatatataacagtaTCCTCTGATAGAATAGGCAGTAGggtgggtgccgtggctcacgcctgtaatcccagcactttgagtggctgaggtgggacgatcacttgagaccaggaatttgagaccagtctgggcaacatggtgagactgtgtctctttaaaaaaaaaaaaaaaaaaagggggggga-----caGTAGAACTGATACagctgaag--aaaaatgaacaagtaaGAAGATGTGGTGGAGGAACTTCTCCAGGAAGctgataaaattatattaatatcagaaagaAT---AGGAGAAAAGCCATCGTAAGAT---------ATAAGGGACAGCTGTTTCTGAAAATCCAAACTCTTCTCTGCTAAGAGAatcctgattttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcgcccaggctggagtgcagtggtacaatctcgactcatggcaaccttcacctcccagattcaagcgattctcctgcctcagcctcccaagtacctgggattataggcactcacaaccacacccaggtaatttttgaatttttagtagagacggggtttcaccatattggtcaggctggtctcaaactcctgacctt--gtgattcgcccacctcagcctcccaatgtgctgagattactggcatgagccaccacgcctggcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46711068  999 +  50890351 AAAAGccagcctgggcaacatagcgagattcccatctactaaccaaaaaaaaaaaaaaaaaaaa-----------agaacccaccgtgggtggtgcacacatgtggccccagctacttgggaggctgaggcaggaggattgcttgagcctgggaggttaaggctgcagtgagctatgattgcgccactgcactccagtctaggtgac-agtgcaagaccctgtctcaaaaaataaaaag-----aaaataaaCatactaaaaaagataaggacacatgttagcaatgtgaaataagaacaattatccataaagcaaggggcttatggaaataaaaagtataaaaatatatgatggtaaa---aaatatataacagtatcctctgatagaataggcagtagggtgggtgccgtggctcacgcctgtaatcccagcactttgaaaggctgaggtgggacgatcacttgagaccaggaatttgagaccagtctgggcaacatggtgagactgtgtctctt--aaaaaaaaaaaaaaggggggg-----------cagtagaattgatacagctgaag--aaaaatgaacaagtaagaagatgtggtggaggaacttttccaggaagctgataaaattctattaatatcagaaagaat---aggagaaaagccatcgtaagat---------ataagggacagCTGTTTCTGAAAATCCAAACTCTTCTCTGCTAAGAGAATCCTGAttttgtttttgtttttgtt---tcttgagatgcagtcttgctc-tgtcgcccaggctggagtgcagtggtacaatctcgactcatggcaaccttcacctcccagattcaagcaattctcctgcctcagcctcccaagtacctgggattataggcactcacaaccacacccaggtaatttttgaatttttagtagagacggggtttcaccatattgctcaggctggtctcaaactcctgacctt--gtgattcgcccaccttagcttcccaatgtgctgagattatcggcatgagccaccacgcctggcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45281729  943 +  49145316 cgagaccatcctggtcaacatggtgaaa-ccccgtctct--actaaa------aatacaaaaaa-----------ttagctgggcat-ggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggcagaggttgcggtgagccgagattgcgccattgcactccagcctgggtaacaagagtgaaactccgtctcaaaaaaaaaaaaa-----aaaagaaTGA-----------GTAAGAACACATGTTAGC----------------------------------------------------AGTATAAAAATATATGATGGTAAACATATATATATAACATTATCCTCTAATGGAATAGGCAGGAGGGTgagtgcggtggctcacacctgtaagcctagcactttgagaggctgaggtgggaggatcacttgagaccaggagttcaagaccagtctgggcaacatggtgagaccttgtctcttt-aaaaaaaaaaaaaaaaGAAGAAGAAGACTAGGCAGTAGAATTGATACAGCTGAAG--AAAATTGAGCAAGCGAGAAAAC---GTGGAGGTGCTTTTCCAGGAAGCTGATATGTTAATATCAGAAAAAGGAAGAATAAGAAGAGACAAGCCATGGTAAAAT---------AGAAGGGACAGCTGCTTCTCAAAATCCAAAATCTTCTCTG---AGGATATCCTGAttttctttttgttttttttttcttttgaggtggagtttcactcttgttgcccaggctggagtgcaatggcgtgatctcggctcaccgcaacctctgcctcccaggttcaagcgattctcctgcctcagtctcccgagtagctgggattacaggcatgcgccaccgtgcccagctaa-ttttgcatttttagtagaggcagggtttcaccatgttggtcaggct-gtcttgaactcccaacctcaggtgatctgcccacctcggcctcccaaaatgctgagattacaggcgtgagccaccatacccggcc
i calJac3.chr22             I 462 I 316

a score=1488255.000000
s hg38.chr19_GL949751v2_alt      1094 572 +   1002683 GagaaccctgattttgttcaggtgtcagttggccacccttgttccttggagacttggcccttttctagtttcaggcatgaatcttgattagtctaagGCTTAGTGACGTGCtggttgtgaaagtgtggtccctgaaccagcagcgtcagcatcacctgggagctcgtcagaaaggcaaattcttgagccccacc----ccagacctactgaatcag--tcagaaactctgaaggtgagcttttcctttctcctcctctccaacctatggtttgacaagtcctccaggtgattctgatgcacactgaagtttaaacaccTTTAGCCCAGTTAGGTAAACTCACGCCCACTGCTAGTGGTTATTTAAGGAAGGGGCTGGATGCAATTGTGTTTCTTGAGATGTGAGTGGAAATCTCGTGGGAGGCTTCCTCATGTTGGAGAGGGCCGCGTTGGAAGGGCCTTTCTATGCCCTTCGTCTGCTTTTTATCTCATCCTTTCCAAAAAATTAACttttta----tttatttatttgagacagagtcttgctcttgtcgcccaggctggagtgcagtggcgcgatctcg
s panTro4.chr19              58937582 574 +  63644993 GagaaccctgattttgttcaggtgtcaggtggccacccttgttccttggagacttggcccttttctagtttcaggcatgaatcttgattagtctaagGCTTAGTGACGTGCtggttgtgaaagtgtggtccctgaaccagcagcgtcagcatcacctgggagctcgtcagaaaggcaaattcttgagccccact----ccagacttactgaatcagagtcagaaactctgaaggcgagcttttcctttctcctcctctccaacctatggtttgacaagtcctccaggtgattctgatgcacactgaagtttaaacaccTTTAGCCCAGTTAGGTAAACGCACGCCCACTGCTAGTGGTTATTTAAGGAAGGGGCTGGATGCAATTGTGTTTCTTGAGATGTGAGTGGAAATCTCGTGGGAGGCTTCCTCATGTTGGAGAGGGCCGCGTTGGAAGGGCCTTTCTATGCCCTTCGTCTGCTTTTTATCTCATCCTTTCCAAAAAATTAACtttgta----tttatttatttgagacagagtcttgctcttgtcgcccaggctggagtgcagtggcgcgatctcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55799257 574 +  60714840 GagaaccctgattttgttcaggtatcaagtggccacccttgttccttggagacttggcccttttctagtttcaggcatgaatcttgattagtctaagGCTTAGTGACGTGCtggttctgaaagtgtggtccctgaaccagcagcttcagcatcacctgggagctcgtcataaaggcaaattcttgagccccact----ccagacctactgaatcagagtcagaaactctgaaggtgagcttttcctttctcctcctctccaacctatggtttgacaagtcctccaggtgattctgatgcacactaaagtttaaacactTTTAGCCCAGTTAGGTAAACTCATGCCCACTGCTAGTGCTTACTTAAGGAAGGGGCTGGATACAATTGTGTTTCTTGAGATGTGAGTGGAAATCTCGTGGGAGGCTTCCTCATGTTGGAGAGGGCCACGTTGGAAGGGCCTTTCTATGCCCTTTGTCTGCTTTTTATCTCATCCTTTCCAAAAAATTAACttttta----tttatttatttgagacagagtcttgctcttgtcgcccaggctggagtgtagtggcgcgatctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102565761 557 - 106955855 Gagaaccctgattttgttcaggtgtcaagtggccacccttgttccttggagacttggcccttttctagtt-----------tcttgattactctaagGCTTAGTAACGTGCtgatttggaaaatgtggtccctgaaccagcagcctcagcctcacctgggagctcgtcagaaaggcaaattcttgagccccact----ccagacctactgaatcagagtcagaaactctgacagttagcttttcctttctcctcctctccaacctgtggttggacaagtcctccaggtgattctgatgcacactaaagtttaaacacTTTCAGCCCAGTTAGGTAACCTCACGCCCACTGCTAGTGGTTACTTAAGGAAGGGGCTGGATGCAAT--TGTTTCTTGAGATGTGAGTGGGAATCTCGTGAGAGGCTTCCTCATGTTGGAGAGGGCCGCGTTGGAAGGGCCTTTCTACGCCCTTCGTCTGCTTTTTAGCTCATCCTTTCCAAAAAATTAACtt--------tttatttatttcagacagagtcttgctcttgtcgcccaggctggagtgcagtggcgcgatctcg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59859285 566 +  64156825 GagaaccctgattttgttcaggtgtcaactggccacccttgttccttggagacttggcccttttctagtttcaggtatgaatcttgattagtctaagGCTTAGTGACGTGCtggttctgaaagtgtggtccctgaaccagcagcgtcagcattacccgggagctcatc----aggcaaattcttgagccccacccacgccagccctactgaa------tcagaaactctgaaggcgagcttttcctttttcctcctctccaacctatagtttgacaagtcctccaggtgattctgatgcacgctaaagtttaaacaccGTTAGCCCAGTTAGGTAACCTCACACCCAGTGCTAGTGATCACTTAAGGAAGGGGCTGGATGCAAGTGTGTTTCTTGAGATGTGAGTGGAAATCTCATGGGAGGCTTCCTCATGTTAGAAAGGGACGCCTTGGAAAGG-----CTATGCCCATCGTCTGCTTTTTATCTCATCCTTTCCAAAAAATTAACtttttatgtatttatttttttgagatgaagtcttgct-gtgctgcccaggctagagtgcagtggcgcgatcttg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54876263 566 +  59248254 Gagaaccctgattttgttcaggtgtcaactggccacccttgttccttggagacttggcccttttctagtttcaggtatgaatcttgattagtctaaggcttagtgacgtgctggttctgaaagtgtggtccctgaaccagcagcgtcagcattacccgggagctcatc----aggcaaattcttgagccccacccacgccagccctactgaa------tcagaaactctgaaggcgagcttttcctttttcctcctctccaacctatagtttgacaagtcctccaggtgattctgatgcacgctaaagtttaaacaccgttagcccagttaggtaacctgacacccagtgctagtgatcatttaaggaaggggctggatgcaagtgtgtttcttgagatgtgagtggaaatctcatgggaggcttcCTCATGTTAGAAAGGGACGCCTTGGAAAGG-----CTATGCCCATCGTCTGCTTTTTATCTCATCCTTTCCAAAAAATTAACtttttatgtatttatttttttgagatgaagtcttgct-gtgctgcccaggctagagtgcagtggcgcgatcttg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46999131 566 +  51301725 gagaaCCCTGATTTTGTTCAGGTGTCAACTGGCCACGCTTGTTCCTTGGAGACTTGGTCCTTTTCTAGTTTCAGGTATGAATCTTGATTAGTCTAAGGCTTAGTGATGTGCTGGTTCTGAAAGTGTGGTCCCTGAACCAGCAGCGTCAGCATTACCCGGGAGCTCATC----AGGCAAATTCTTGAGCCCCACCCACGCCAgccctactgaa------tcagaaactctgaaggcgagcttctcctttttcctcctctccacCCTATGGTTTGacaagtcctccaggtgattccgATGCACGCTAAAGTTTAAACACTGTTCGCCCAGTTCGGTAACCTCACACCCAGTGCTAGTGATCACTTAAGGAAGGGGCTGGATGCAAGCGTGTTTCTTGAGATGTGAGTGGAAATCTCATGGGAGGCTTCCTCATGTTAGAAAGGGACGCCTTGGAAAGA-----CCATGCCCGTCGTCTGCTTTTTATCTCATCCTTtccaaaaaattaactttttatgtctttatttttttgagatgaagtcttgtt-gtgttgcccaggctggagtgcaggggcgcgatcttg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46712067 566 +  50890351 Gagaaccctgattttgttcaggtgtcaactggccacccttgttccttggagacttggcccttttctagtttcaggtatgaatcttgattagtctaaggcttagtgacgtgctggttctgaaagtgtggtccctgaaccagcagcgtcagcattacccgggagcttatc----aggcaaattcttgagccccacccacgccagccctactgaa------tcagaaagtctgagggcgagcttttcctttttcctcctctccaccccatggtttgacaagtcctccaggtgattctgatgcacgctaaagtttaaacactgttcgcccagttaggtaacctcacacccagtgctagtgatcacttaaggaaggggctggatgcaaacgtgtttcttgagatgtgagtggaaatctcatgggaggcttcCTCATGTTAGAAAGGGACGCCTTGGAAAGA-----CTATGCCCATCGTCTGCTTTTTATCTCATCCTTTCCAAAAAATTAACtttttatgtatttatttttttgagatgaagtcttgct-gtgttgcccaggctggattgcagtggcgcgatcttg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45282988 468 +  49145316 GGgaaaccggattttgttcaggtgtcaagtggccacccttgttccttggagacttggcccctttctagtctcaggcatgaatcctgatgcgtctaagGCTTAGCGACATGCtgattcagagagtgtagcccctgagcaagcagcatcagcgtgacccgggagcttgtcagaacggcaaatccttgagcccctct----ccagacctatggaa------tcag--actctgcgggtgagcttttcctttttcctcctctccaagctgtggtttcacaagttctccaggcaattctgacgcaccctgaagtttaaACACT-CGAGCCCAGTTAGGTAACCCCACACTTACTGCTAGTGATGAC-TAAGGAAGGGGCTGGACGCAGCTGTGTTTCGGGAGATTTAAGTGGAAACCt-----------------------------------------------------------------ttttt-----------------------------------tttttttttttgagacggagtttcgctcttgttacccaggctggagtgcaatggcgtgatcttg
i calJac3.chr22             I 316 C 0

a score=206234.000000
s hg38.chr19_GL949751v2_alt      1666 87 +   1002683 gctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctggggctacaggcacctgctactat
s panTro4.chr19              58938156 87 +  63644993 gctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctggggctacaggcacctgctactat
i panTro4.chr19             C 0 I 314
s ponAbe2.chr19              55799831 87 +  60714840 gctcacggcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctggggctacaggcacctgctactat
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59859851 87 +  64156825 gctcacttcaacctccacctcctgggttccagcaattcttctgcctcaacctcccgagtagctgggactacgggcacctgctactat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54876829 87 +  59248254 gctcactgcaacctccacctcctgggttccagcaattcttctgcctcaacctcccgagtagctgggactacgggcacctgctactat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46999697 87 +  51301725 gctcactgcaacctccacctcctgggttccagcaattcttctgcctcaacctcccgagtagctgggactacaggcacctgctactat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46712633 87 +  50890351 gctcactgccaccttcacctcctgggttccagcaattcttctgcctcaacctcccaagtagctgggactacaggcacctgctactat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45283456 87 +  49145316 gctcacagcaacctccgcctcctgggttcaggcaattctcctgcctcagcctcctgagtagctgggactacaggcaggcgccaccgt
i calJac3.chr22             C 0 C 0
e nomLeu3.chr10             102566318  0 - 106955855 C

a score=12894.000000
s hg38.chr19_GL949751v2_alt      1753 5 +   1002683 gccca
s panTro4.chr19              58938557 5 +  63644993 gccca
i panTro4.chr19             I 314 C 0
s ponAbe2.chr19              55799918 5 +  60714840 gccca
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59859938 5 +  64156825 gccca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54876916 5 +  59248254 gccca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46999784 5 +  51301725 gccca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46712720 5 +  50890351 gcccg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45283543 5 +  49145316 gccca
i calJac3.chr22             C 0 I 306
e nomLeu3.chr10             102566318 0 - 106955855 C

a score=1009888.000000
s hg38.chr19_GL949751v2_alt      1758 450 +   1002683 gctaa-tttttgtattttccgtagagacagggcttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctggcattacaggagcgagccacctcacctggcTTAACTTTTTATTTTAAAATAGTTCTGGAggccaggtgtggcagctcacgcctataatcccag--cactttgggagtctgaggcagaaggatctcttgagcccaggtgttcaagaccagcctgggcaacatggcaaaa--tcccatctctacaaaaaagtttttaaaaattagcatttgcctgtgcgtccagcttctcaggaagctgaggcgggaggatcacttgagcttaggaggtcaaggctgcagtgagACACCATACTGGGATTACAGGCGTGAGACACCACTCCAGGTCTGGGttctct-----ttttttttttttt
s panTro4.chr19              58938562 453 +  63644993 gctaa-tttttgtattttccgtagagacagggcttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctggcattacaggagtgagccacctcacctggcTTAACTTTTTATTTTAAAATAGTCCTGGAggccaggtgtggcagctcacgcctataatcccag--cactttgggagtctgaggcagaaggatctcttgagcccaggtgtttaagaccagcctgggcaacatggcaaaaaatcccatctctacaaaaaattttttaaaaattagcatttgcctgtgtgtccagcttcttgggaagctgaggtgggaggatcacttgagcctaggaggtcaaggctgcagtgagACACCATACTGGGATTACAGGCATGAGACACCACTCCAGGTCTGGGttctct----cttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55799923 455 +  60714840 gctaa-tttttgtattttccgtagagacagggcttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctgggattacaggaacgagccacctcacctggctTAACTTTTTATTTTAAAATAGTTCTGGAggccaggtgtggcagctcacgcctataatcccag--cactttgggagtctgaggcagaaggatctcttgagcccaggtgttcaagaccagcctgggcaacatggcaaaa--tcccatctctacaaaaaattttttaaaaattagcatttgcctgtgcgtccagcttcttgggaagctgaggcgggaggatcacttgagcctaggaggtcaaggctgcagtgagACACCATACTGGGATTACAGGCATGAGACACCACACCAGGTCTGGGTTCCCttttttttttttttttttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59859943 449 +  64156825 gctaa-tttttgtatttttagtagagacagggcttcaccatgttgcccaggctggtctcaaacccctgacctcaagtgatctgcccacctgtgcctcccaaagtgctggcattacaggagcaagctacctcacctggcTTAACTTTTTATTTTAAAACCATTCTGGAggccaggtgtggcggctcatgcctataatcccag--ctctttgggagtctgaggcagaaggatcac-tgagcccaggtattcaagaccaacctgggcaacatggcaaaa--tcccatctctacaaaaaatttttaaaaaattagcattcgcctgtacatccagctactttggaagctgaggcgggaggatcacttgagcctgggaggtcaaggctgcagtgagACACCATGCTGGGAATACAGGCATGAGACACCACTCCAGGTCTGGGGGTTCT-----TTTTTTTTTTTTT
i rheMac3.chr19             C 0 I 569
s macFas5.chr19              54876921 444 +  59248254 gctaa-tttttgtatttttagtagagacagggcttcaccatgttgcccaggctggtctcaaacccctgacctcaagtgatctgcccacctgtgcctcccaaagtgctgggattacaggagcaagctacctcacctggcTTAACTTTTTATTTTAAAACCATTCTGGAggccaggtgtggcggctcatgcctataatcccag--ctctttgggagtctgaggcagaaggatcac-tgagcccaggtattcaagaccaacctgggcaacatggcaaaa--tcccatctctacaaaaaattttttaaaaattagcattcgcctgtacatccagctacttgggaagctgaggcgggaggatcacttgagcctgggaggtcaaggctgcagtgagACACCATGCTGGGAATACAGGCATGAGACACCACTCCAGGTCTGGGGGttct-----tttttttt-----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              46999789 449 +  51301725 gctaa-tttttgtatttttagtagagacaggacttcaccatgttggccaggctggtctcaaacccctgacctcaagtgatctgcccacctgtgcctcccaaagtgctgggattacaggagcaagcTACTTCACCTggcttaactttttattttaaaaccgttctggaggccaggtgtggcggctcatgcctataatcccag--ctctttgggagtctgaggcagaaggatcac-tgagcccaggtattcaagaccaacctgggcaacatggcaaaa--tcccatctctacaaaaaattttttaaaaattagcattcgCCTGTacatccagctacttgggaagctgaggcgggaggatcacttgagcctgggaggtcaaggctgcagtgagacaccatgctgggaatacaggcatgagacactacTCCAGGTCTgggggttct-----ctctctctctttt
i papAnu2.chr19             C 0 I 4
s chlSab2.chr6               46712725 452 +  50890351 gctaa-tttttgtatttttagtagagacagggcttcaccatgttggccaggctggtctcaaaccactgacctcaagtgatctgcccacctgtgcctcccaaagtgctgggattataggagcaaaccacctcacctggcTTACCTTTTTATTTTAAAACAGTTCTGGAggccaggtgtggcggctcatgcctataatcccagctctctttgggagtctgaggcagaaggatcacttgagcccaggtattcaagaccaacctgggcaacatggcaaaa--tcccatctctacaaaaaattttttaaaaattagcattcgcctatacatccagctacttgggaagctgaggtgggaggatcacttgagcctgggaggtcaaggctgcagtgagACACCATGCTGGGAATACAGGCATGAGACACCACTCCAGGTCTGGGGGTTCT-----CTCTTTTTtttgt
i chlSab2.chr6              C 0 I 18
s calJac3.chr22              45283854 444 +  49145316 gctaattttttgtatctttagttgagatggggtttcaccatgttggccaggctggtcttgaactcctgacctc--gtgatctgcctgcctcggcctcccagcatgctgggattacaggagcaagccgcctcacctggccTGACATTTTATTTTAAAATCGTTCTGGAgaccaggtgtggcaactcatgcctgtaattccag--cactttgggagtctgaggcagaagggtcacttgagcccaggtgttaaagaccagcctgggcaatttggcaaaa--ccccatctctacaaaaagtttttaaaaaattagtgttcacctgtacttccagctacttgggaggctgaagaaggaggatcacttgagcccaggaggtcaaggctgtcgtgaaccACCATGCTGGGATTACAGGCATGAGGCATCACTTGAAGTCTTGGGttctc-----tttttttt-----
i calJac3.chr22             I 306 C 0
e nomLeu3.chr10             102566318   0 - 106955855 C

a score=287241.000000
s hg38.chr19_GL949751v2_alt      2208 173 +   1002683 tttttttgagacagagtctcactctttcgcccaggctgcaatgaagtggcaccatcttggctcacagcaacctccaccccgcagattcaagcgattctcctgcctcagcctcctgagcagctgggattacaggcgcccgccaccaagcctggctaatttttatattttAGAGA
s panTro4.chr19              58939015 173 +  63644993 tttttttgagacagagtctcactctttcgcccaggctgcaatgaagtggtgccatcttggctcacagcaacctgcaccccgcagattcaagcgattctcctgcctcagcctcctgagcagctgggattacaggcgcccaccaccaagcctggctaatttttatattttAGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55800378 172 +  60714840 tttttttgaaacagaatctcactctttcgcccaggctgcaatgaa-tggcaccatcttggctcacagcaacctccaccccgcaggttcaagcgattctcctgcctcagcctcctgagcagctgggattacaggcgcccgccaccaagcctggctaatttttatattttAGAGA
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54877365 171 +  59248254 tttttttgagacag--tctccctctttcgcccaagctggagtgaagtggcgtgatctcggctcactgcaacctccgccccacagattcaagtgattctcctgcctcagcctcctgagcagctaggattataggcgcccgccaccaagcctggctaatttttatattttagaga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47000242 171 +  51301725 tttttttgagacag--tctccctctttcgcccaagctggagtgaagtggcgtgatcttggctcactgcaacctccaccccccagattcaagtgattctcctgcctcagcctcctgagcagctaggattataggcgcccgccaccaagcctggctaatttttatattttagaga
i papAnu2.chr19             I 4 C 0
s chlSab2.chr6               46713195 171 +  50890351 tttttttgagacag--tctccctcttttgcccaagctggagtgaagtggcgtaatctcggctcactgcaacctccgccccacagattcaagtgattctcctgcctcagcctcctgggcagctaggattataggcacccgccaccaagcctggctaatttttatattttagaga
i chlSab2.chr6              I 18 I 405
s calJac3.chr22              45284298 173 +  49145316 tttttttgaaatggagtctcactcttttgccaaggtgggagtgaagtggcacaatcttggctcactgcaacctctgcccccgaggttcaaggaattctcctgcttcagcctcccaagcagctgggattataggcacccaccaccaagcctggctaatttttgtattttagaga
i calJac3.chr22             C 0 C 0
e nomLeu3.chr10             102566318   0 - 106955855 C
e rheMac3.chr19              59860392 569 +  64156825 I

a score=180.000000
s hg38.chr19_GL949751v2_alt      2381 1 +   1002683 T
s panTro4.chr19              58939188 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55800550 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45284471 1 +  49145316 c
i calJac3.chr22             C 0 I 2412
e nomLeu3.chr10             102566318 0 - 106955855 C
e chlSab2.chr6               46713366 405 +  50890351 I
e papAnu2.chr19              47000413 0 +  51301725 C
e macFas5.chr19              54877536 0 +  59248254 C
e rheMac3.chr19              59860392 569 +  64156825 I

a score=15155.000000
s hg38.chr19_GL949751v2_alt      2382 31 +   1002683 gcccaggctggagtacagtggtgcgatctca
s panTro4.chr19              58939189 31 +  63644993 gcccaggctggagtacagtggtgcgatctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55800551 31 +  60714840 gcccaggctggagtacagtggtgcgatctca
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54877536 18 +  59248254 -------------cgcggttttgccacgttg
i macFas5.chr19             C 0 I 5
s papAnu2.chr19              47000413 18 +  51301725 -------------cgcggttttgccatgttg
i papAnu2.chr19             C 0 I 5
s calJac3.chr22              45286884 31 +  49145316 gtccagactggagtgcaatggtacaatctca
i calJac3.chr22             I 2412 C 0
e nomLeu3.chr10             102566318  0 - 106955855 C
e chlSab2.chr6               46713366 405 +  50890351 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=130378.000000
s hg38.chr19_GL949751v2_alt      2413 112 +   1002683 gctcaacacaacctccacctcccggattcaagtgattctcctgcctcagcctccccattagctgagattacaggcatgcaccaccacgcccggctaa--ttttgtatttttagt
s panTro4.chr19              58939220 111 +  63644993 gctcaacacaacctccacctcccgggttcaagtgattctcctgcctcagcctccccgttagctgagattgcaggcatgcaccaccacgcccggcta---ttttgtatttttact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55800582 112 +  60714840 gctcaacacaacctccacctcccgggttcaagtgattctcctacctcagcctccccattagctgagattacaggcatgtgccaccacgcccggctaa--ttttgtatttttagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102566318 112 - 106955855 gctcaacataacctccacctcccaggttcaagcgattctcctgcctcagcctccccagtagctgagattacaggcatgcgccaccacacctggctca--ttttgtatttttagt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54877559 112 +  59248254 gctggcctcaaactcaaactcctgacctcaaatgatccgcccgcctctgcctctgaaagtgctgggattacaggcatgagccaccgtgcccCGACGG--TTCTGTTTTTGTAAT
i macFas5.chr19             I 5 I 1
s papAnu2.chr19              47000436 112 +  51301725 gctggcctcaaactcaaactcctgacctcaagtgatctgcccgcctctgcctccaaaagtgctgggattacaggcgtgagccaccacgccccgacGG--TTCTGTTTTTGTAAT
i papAnu2.chr19             I 5 I 978
s calJac3.chr22              45286915 113 +  49145316 gctcaccacaacc-ctgcctcctcgtttcaagcaattcgcctgcctcagcctcccaagtagctggggttacaggcgcccgccaccacgcttggctagattttgatatcgttagt
i calJac3.chr22             C 0 C 0
e chlSab2.chr6               46713366 405 +  50890351 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=18620.000000
s hg38.chr19_GL949751v2_alt      2525 25 +   1002683 agag-acagg---gtttctctgtgttggt
s panTro4.chr19              58939331 25 +  63644993 agag-acagg---gtttctctgtgttggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55800694 25 +  60714840 agag-acagg---gtttctttatgttggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102566430 25 - 106955855 agag-acggg---gtttctccaggttggt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54877672 29 +  59248254 AGCGCACAGGTTCATTTTTCTGTGTAAGT
i macFas5.chr19             I 1 I 202
s calJac3.chr22              45287028 25 +  49145316 agaa-atggg---gtttcaccatgttgac
i calJac3.chr22             C 0 C 0
e chlSab2.chr6               46713366 405 +  50890351 I
e papAnu2.chr19              47000548 978 +  51301725 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=294344.000000
s hg38.chr19_GL949751v2_alt      2550 387 +   1002683 caggttggtctccaattcctgacctccggtgatctgcctgcctcggcctcccaaagtgctgggattacgggtgtgagccactgtgcccggcTGATCTTACATTTTCTTGTGCACTTATTCATGAGCTTTTTTTTTTTTT-ATGAAAATGAATTCCTACCATCCATTCTCCTTCCAAA-CTGCTCATACCCAGTATTCCCAAGGTTTTTGCACATGTATATAACAGAATGTCAAAGTAGATTCATTGCAATCTCAGTTTCTGCTCAGGCCCAAAGATTATAGATGCCAGCGAGGTCAGATCTCACAGTAAGGCCATTTCTGCATGACTTCAGGAGAAAATGCTGAAAACCTAATTTCCCCACACCCTTGGCCTCTTGTCCACCTGAAGGT
s panTro4.chr19              58939356 388 +  63644993 caggttggtctccaattcccgacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattatgggtgtgagccactgtgcccggcTGATCTTACATTTTCTTATGCACTTATTCATGAGCTTTTTTTTTTTTTTATGAAAATGAATTCCTACCATCCATTCTCCTTCCAAA-CTGCTCATATGCAGTATTCCCAAGGTTTTTGCACATGTATATAACAGAATGTCAAAGTAGATTCATTGCAATCTCAGTTTCTGCTCAGGCCCAAAGATTATAGATGCCAGCGAGGTCAGATCTCACAGTAGGGCCATTTCTGCATGACTTCAGGAGAAAATGCTGAAAACCTAATTTCCCCACACGCTTGGCCTCTTGTCCACCTGAAGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55800719 377 +  60714840 caggttggtctccaactcccgacctcaggtgatctgcctgccttggcctcccaaagtgctgggattctgggcgtcagccactgcgcccggctGATCTTACATTTTCTCGTGCACTTATTCATGAGCTTTTTTTTTTTA--ATGAAAATGAATTCCTACCATCCATTCTCCTTCCAAA-CTGCTC---------ATTCCCAAGGTTTTTGCACATGTATATAACAGAATGTTAAAGTCGATTCATTGCAATCTCAGTTTCTGCTCAGGCCCAAAGAGTACAGATGCCAGCGAGGTCAGATCTCACAGTAGGGCCATTTCTACGTGACTTCAGGAGAAGATGCTGAAAACCTAATTTCCCCACACCCTTGGCCTCTTGTCCACCTGAAGGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102566455 387 - 106955855 caggttggtctccaactcccgaccgcaggtgatctgcctgcctcggcctcccaaagtgctgggattacgggcgtgagccactgcgcccggcTGATCTTACATTTTCTCGTGCACTTATTCATGAGCTTTTTTTTTTTTA-ATGAAAATGAATTACTACCATCCATTCTCCTTCCAAA-CTGCTCATACGCGGTATTCCCAAGGTTTTTGCACATGTATATAACAGAATGTCAAAGTAGATTCATTGCAATCTCAGTTTCTGCTCAGGCCCAAAGATTACAGATGCCAGCAAGGTCAGATCTCACAGTAGGGCCATTTCTGCATGACTTCAGGAGAAGATACTGAAAACCTAATTTCCCCACACCCTTGGCCTCTTGTCCACCTGAAGGT
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45287053 360 +  49145316 taggctggtctcaaactcatgacctcaggtgatccacccaactcgacctcccaaagtgctgggattacaggcatgagctaccatgccAGCCTGAGCTT----------------------------TTTTTTTTTTTTA-ATGAAAACGAATTCCTACCATCCATTCTCCTTCCAAAGCTGCTCATACACAGTATTCCCGTGGTTTTTGCACATTTATTTAACAGAATGTCAAAGTAGACTCATTGCGATCTCAGTTTCTGCTCAGGCCCAGAGATTACAGTTTCCAACGAAGTAGGATCTCACAGTAGGACCATTTCTGCATGACTTCAGGGGAAGATGCTGAAAAGCTAATTTCCCCACACCCTTTGTCTCTTGTCTGTCCGAAGCT
i calJac3.chr22             C 0 C 0
e chlSab2.chr6               46713366 405 +  50890351 I
e papAnu2.chr19              47000548 978 +  51301725 I
e macFas5.chr19              54877701 202 +  59248254 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=5955.000000
s hg38.chr19_GL949751v2_alt      2937 28 +   1002683 AAGAAAGGAGTGTtggggggaaggggga
s panTro4.chr19              58939744 28 +  63644993 AAGAAAGGAGTGTtggggggagggggga
i panTro4.chr19             C 0 C 0
s calJac3.chr22              45287413 28 +  49145316 AGGAAAGGAGTGTTGAGATTAGGGGAGA
i calJac3.chr22             C 0 I 1294
e ponAbe2.chr19              55801096  0 +  60714840 C
e nomLeu3.chr10             102566842  0 - 106955855 C
e chlSab2.chr6               46713366 405 +  50890351 I
e papAnu2.chr19              47000548 978 +  51301725 I
e macFas5.chr19              54877701 202 +  59248254 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=17229.000000
s hg38.chr19_GL949751v2_alt      2965 188 +   1002683 gggatagcattaggagatatacctaatgctaaatgacgagttagtgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataaaataaaataaaaataaataaataaataaaaattaaaaaaagaaaaaaaa
s panTro4.chr19              58939772 188 +  63644993 gggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaagttaaagtataataataataaaataaAATaaaaataaataaataaataaaaattaaaaaaagaaaaaaaa
i panTro4.chr19             C 0 C 0
e ponAbe2.chr19              55801096   0 +  60714840 C
e calJac3.chr22              45287441 1294 +  49145316 I
e nomLeu3.chr10             102566842   0 - 106955855 C
e chlSab2.chr6               46713366 405 +  50890351 I
e papAnu2.chr19              47000548 978 +  51301725 I
e macFas5.chr19              54877701 202 +  59248254 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=814.000000
s hg38.chr19_GL949751v2_alt      3153 5 +   1002683 aagaa
s panTro4.chr19              58939960 3 +  63644993 aa--a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801096 5 +  60714840 AAGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102566842 5 - 106955855 AAGAA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54877903 5 +  59248254 AAGGT
i macFas5.chr19             I 202 C 0
e calJac3.chr22              45287441 1294 +  49145316 I
e chlSab2.chr6               46713366 405 +  50890351 I
e papAnu2.chr19              47000548 978 +  51301725 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=34363.000000
s hg38.chr19_GL949751v2_alt      3158 33 +   1002683 aGGAGTGTTGAGATTAGAAGGTATTTTTTTTCC
s panTro4.chr19              58939963 33 +  63644993 aGGAGTGTTGAGATTAGAAGGTATTTTTTTTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801101 33 +  60714840 AGGAGTGTTGAGATTAGAAGAttttttttttcc
i ponAbe2.chr19             C 0 I 6
s nomLeu3.chr10             102566847 33 - 106955855 AGGAGTGTTGAGATTAGAAGATAttttttttcc
i nomLeu3.chr10             C 0 I 6
s macFas5.chr19              54877908 31 +  59248254 AGGAGTGTTGCAATTAGAAGAtttttttttc--
i macFas5.chr19             C 0 I 7
s chlSab2.chr6               46713771 31 +  50890351 AGGAGTGTTGAAATTAGAAGAttttttttcc--
i chlSab2.chr6              I 405 I 6
e calJac3.chr22              45287441 1294 +  49145316 I
e papAnu2.chr19              47000548 978 +  51301725 I
e rheMac3.chr19              59860392 569 +  64156825 I

a score=256941.000000
s hg38.chr19_GL949751v2_alt      3191 155 +   1002683 TAttgggatacaggtggtgtttggttgcatgagtaagttctttagtggtgctttgtgagattgtggtgtagccatcacccaagcagtatacactgcaccccatttatagtcttttatccctcgcccccctctcacctttcccc-ccaagtccccaa
s panTro4.chr19              58939996 156 +  63644993 TAttgggatacaggtggtgtttggttgcatgagtaagttctttagtggtgctttgtgagattgtggtgtagccatcacccaagcagtatacactgcaccccatttatagtcttttatccctcgcccccctctcacctttccccaccaagtccccaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801140 155 +  60714840 tattgggatacaggtggtgtttggttgcatgagtaagttctttagtggtgctttgtgagattgtggtgcagccatcacccaagcagtatacactgcaccctattcatagtcttttatccctcgcccccctctcacctttcccc-ccaagtccccaa
i ponAbe2.chr19             I 6 C 0
s nomLeu3.chr10             102566886 155 - 106955855 tattgggatacaggtggtgtttggttgcatgagtaagttctttagtggtgctttgtgagatcgaggtgcagccatcacccaagccgtatacactgcaccctattcaaagtcttttatccctcgcccccctctcacctttcccc-ccaagtgcccaa
i nomLeu3.chr10             I 6 C 0
s rheMac3.chr19              59860961 147 +  64156825 tattgagatacaggtggtgtttggttgcatgagtaagtttttttg--------tgtgagattttggtgcacccatcacccaagcagtatacactgcaccttatttgtagtcttttatccctcgccccccttccaccttttacc-ccaagtccccaa
i rheMac3.chr19             I 569 C 0
s macFas5.chr19              54877946 147 +  59248254 tattgagatacacgtggtgtttggttgcatgagtaagttctttag--------tgtgagattttggtgcacccatcacccaagcagtatacactgcaccttatttgtagtcttttatccctcgccccccttccaccttttacc-ccaagtccccaa
i macFas5.chr19             I 7 C 0
s chlSab2.chr6               46713808 147 +  50890351 tatcgagatacaggtggtgtttggttgcatgagtaagttctttag--------tgtgagattttggtgcacccatcacccaagcagtatacactgcaccttatttgtagtcttttatcccttgccccccttccaccttttacc-ccaagtccccaa
i chlSab2.chr6              I 6 C 0
e calJac3.chr22              45287441 1294 +  49145316 I
e papAnu2.chr19              47000548 978 +  51301725 I

a score=236373.000000
s hg38.chr19_GL949751v2_alt      3346 104 +   1002683 agtccattgtatcattcttatgcctttgcatcctcatagtttagctcccacatatcagtgagaacatatgatgtttggttttccattcctgagtt-acttcactt
s panTro4.chr19              58940152 104 +  63644993 agtccattgtatcattcttatgcctttgcatcctcagagtttagctcccacatgtcagtgagaacatacgatgtttggttttccattcctgagtt-acttcactt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801295 105 +  60714840 agaccattgtatcattcttatgcctttgcatcctcatagtttagctcccacatatcagtgagaacatatgatgtttggttttccactcctgagttaacgtcactt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102567041 104 - 106955855 agaccattgtatcattcttatgcctttgcatcttcatagtttagctcccacatatcagtgagaacatacgatgtttggttttccattcctgagtt-acttcactt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59861108 104 +  64156825 agtccattgtatcattcttatgcctttgcgtcctcatagtttagctcccacttatcagtgagaacatacgatgtttggttttccattcctgagtt-acttcactt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54878093 104 +  59248254 agtccattgtatcattcttatgcctttgcgtcctcatagtttagctcccacttatcagtgagaacatacgatgtttggttttccattcctgagtt-acttcactt
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46713955 104 +  50890351 agtccattgtatcattcttatgcctttgcgtcctcatagtttagctcccacttatcagtgagaacatacaatgtttggttttccattcctgagct-acttcactt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3856875 100 -  49145316 agcccattgtgtcattcttatgtctttgtgtcctcataacttagctctcacttatgagtgagaacat---atgcttggtttt-tgttcctgagtt-acttcactt
i calJac3.chr22             n 1294 C 0
e papAnu2.chr19              47000548 978 +  51301725 I

a score=120754.000000
s hg38.chr19_GL949751v2_alt      3450 43 +   1002683 agaataatagtctccaGAGATTAGAAGAGTttttgttttgttt-----
s panTro4.chr19              58940256 41 +  63644993 agaataatagtctccaGAGATTAGAAG--TTTTTGTTTTGTTT-----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801400 43 +  60714840 agaataatagtctccaGAGATTAGAAGAGTTTTTGTTTTGTTT-----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102567145 43 - 106955855 agaataatagtctccaGAGATTAGAAGAGTTTTTGTTTTGTTT-----
i nomLeu3.chr10             C 0 I 3415
s rheMac3.chr19              59861212 43 +  64156825 agaataatagtctccaGAGATTAGAAGCGTTTTTGTTTTGGTT-----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54878197 43 +  59248254 agaataatagtctccaGAGATTAGAAGCGTTTTTGTTTTGGTT-----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47001526 43 +  51301725 agaataatagtgtCCAGAGATtagaagagtttttgttttggtt-----
i papAnu2.chr19             I 978 C 0
s chlSab2.chr6               46714059 43 +  50890351 agaataatagtctccaGAGATTAGAAGCGTTTTTGTTTTGGTT-----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3856975 48 -  49145316 agaataatactttccaGAGATTAGAAGCGTTTTTGTTTGGTTCTGTTC
i calJac3.chr22             C 0 C 0

a score=12075.000000
s hg38.chr19_GL949751v2_alt      3493 5 +   1002683 tgttt
s panTro4.chr19              58940297 5 +  63644993 TATTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801443 5 +  60714840 TGTTT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59861255 5 +  64156825 TGTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54878240 5 +  59248254 TGTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47001569 5 +  51301725 tgttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46714102 5 +  50890351 TGTTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3857023 5 -  49145316 TGTTT
i calJac3.chr22             C 0 C 0
e nomLeu3.chr10             102567188 3415 - 106955855 I

a score=1110817.000000
s hg38.chr19_GL949751v2_alt      3498 366 +   1002683 ctgtgtgtttgtttACGTAAGCTGTTGGTGTGCTGTGAGTCCCATCCTCTGTCCACCGTAGATGTGTGATGGAGGATGACAGTCTCTTCAACTGGACAATTCAGAGTAGTTATATGGGGTGAGGGGCGGGTCCAGAGAGGAATGGGGTCtgatatggtttggctttatgtccccacccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattgaatcatggaggtggcttctaccttgttgttctcatgata--aagtgagttctcaggagatctgatggttttataagcgtttggcaagttcctcctttgcttgctcttctctctctcttgttgccttgtg
s panTro4.chr19              58940302 366 +  63644993 CTGTGTGTTTGTTTACGTAAGCTGTTGGTGTGCTGTGACTCCCATCCTCTGTCCACCATAGATGTGTGATGGAGGATGACAGTCTCTTCAACTGGACAATTCAGAGTAGTTATATGGGGTGAGGGGCGGGCCCAGAGAGGAATGGGGTCTCatatggtttggctttatgtccccacccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattgaatcatggaggtggcttctaccttgttgttctcatgata--aagtgagttctcaggagatctgatggttttataagcatttggcaagttcctcctttgcttgctcttctctctctcctgttgccttgtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801448 368 +  60714840 CTGTGTGTTTGTTTACATAAGCTGTTGGTGTGTTGTGAGTCCCATCCTCTGTCCACCATAGGTGTGTGATGGAGGATGACAGTCTCTTCAACTGGACAATTCAGAGTAGTTATATGGGGTGAGGGGCGGGCCCAGAGAGGAATGGGGTCtgatatggtttggctttatgtccccacccaaatctcatcttgaatgataatccccaggtgttgggggaggaacctggtgggaggtgattggatcatggaggtggcttctgccttgttgttctcgtgatagcaagtgagttctcaggagatctgatggttttataagtgtttggcaagttcctcctttgcttgctcttctctctctcctgttgccttgtg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102570603 368 - 106955855 CTGTGTGTTTGTTTACATAAGCTGTTGGTGTGCTGTGACTCCCATCCTCTGTCCACCATAGGTGTGTGATGGAGGATGACAGTCTCTTCAACTGGACAATTCAGAGTAGTTATATGGGGTGAGGGGCGGGCCCAGAGAGGAATAGGGTCtgatatggtttggctttctgtccccacccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattggatcacggaggtggcttctaccttgttgttctcgtgatagcaagtgagttctcaggagatctgatggttttataagtgtttggcaagttcctcctttgcttgctcttctctctctcctgttgccttgtg
i nomLeu3.chr10             I 3415 C 0
s rheMac3.chr19              59861260 368 +  64156825 CTGTGTGtttctttacataagctgttggtgtgctgtgagtcccatccTCTGGCCACCACAGGTGTGTGATGAAGGGTGACAGTCTCTTCAACTGGACGATTCAGAGTAGTTATGTGGGGTGAGGGGCGGGCCCAGAGAGGAATAGGGTCtgatatggtttggctttgtgtccccatccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattggatcatggaggtggcgtccaccatgctgttctcgtgatagcaggtgagttctcaggagatctgatggttttataagtgtttggctagctcctcctttgcttgctcttctctctctcctgttgccttgtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54878245 368 +  59248254 CTGTGTGtttctttacataagctgttggtgtgctgtgagtcccatccTCTGGCCACCACAGGTGTGTGATGGAGGATGACAGTCTCTTCAACTGGACGATTCAGAGTAGTTATGTGGGGTGAGGGGCGGGCCCAGAGAGGAATAGGGTCtgatatggtttggctttgtgtccccatccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattggatcatggaggtggcgtccaccatgctgttctcgtgatagcaggtgagttctcaggagatctgatggttttataagtgtttggctagctcctcctttgcttgctcttctctctcttctgttgccttgtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47001574 368 +  51301725 ctgtgtgtttctttACCTAAGCTGTTGGTGTGCTGTGAGTCCCATCCTCTGGCCACCACAGGTGTGTGATGGAGGATGACAGTCTCTCCAACTGGACGATTCAGAGTAGTTATGTGGGGTGAGGGGCGGGCCCAGAGAGGAATagggtctgatatggtttggctttgtgtccccatccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattggatcatggaggtggcgtccaccatgctgttctcatgatagcaggtgagttctcaggagatctgatggttttataagtgtttggcgAGCTCCTCCTTTGCTTGCTCTTCTCTCGCTCCTgttgccttgtg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46714107 368 +  50890351 CTGTGTGtttctttacataagctgttggtgtgctgtgagtcccatccTCTGGCCACCACAGGTGTGTGATGGAGGATGACAGTCTCTTCAACTGGACGATTCAGAGTAGTTATGTGGGGTGAGGGGCGGGCCCAGAGAGGAACAGGGTCtgatatggtttggctttgtgttcccacccaaatctcatcttgaattgtaatccccaggtgttgggggaggaacctggtgggaggtgattggatcatggaggtggcgttcaccatgctgttcttgtgatagcaggtgagttctcaggagatctgatggttttataagtgtttggcaagctcctcctttgcttgctcttctctcgctcctgttgccttgtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3857028 350 -  49145316 CTGTGTG----TTTACACAAGCTGTTAGTGTGCTGTGGGTCCTGTTTTCCATCCACCATAGGTGGGTGAT---GGATGACAGTCTCTTCAACTGGACAGTTCAGAGTAGTTACATGGGGCGAGGGGCGGGCCCACAGAGGAACAGGGTCtgatatactttggctttatgtccccacccaaatctcatcttgaattgtaatccccaggtgttggggcaggagcctggtaggaggtgattggatcgtggaggaggcttccaccatgctcctctcatgatagca-----------aggagacctgatggttttataagtgtttggcaaggtcctcttttgcttgctcctctctctctcctgctgccttgta
i calJac3.chr22             C 0 n 0

a score=115692.000000
s hg38.chr19_GL949751v2_alt      3864 37 +   1002683 aagaagatatttgcttctccttccccttctgccatga
s panTro4.chr19              58940668 37 +  63644993 aagaagatatttgcttctccttccccttctgccatga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801816 37 +  60714840 aagaagaaatttgcttctccttcgccttctgccatga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102570971 37 - 106955855 aagaagatatttgcttctccttccccttctgtcatga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59861628 37 +  64156825 aagaagatatttgcttctccttccccttctgccatga
i rheMac3.chr19             C 0 I 1040
s macFas5.chr19              54878613 37 +  59248254 aagaagatatttgcttctccttccccttctgccatga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47001942 37 +  51301725 aagaagatatttgcttctccttccccttctgccgtga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46714475 37 +  50890351 aagaagatatttgcttctccttccccttctgccatga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45288735 37 +  49145316 aaaaagatacttgcttctctttcctcttttgccatga
i calJac3.chr22             I 1294 C 0

a score=858063.000000
s hg38.chr19_GL949751v2_alt      3901 450 +   1002683 ctgt-agtttcctgaggccaccctagccatgtggaattgtaagtcaattaaat-------ctctttct------ttt-----------------------------tttttt----------gagactgagccccc--ctgtcatccaggctggtgtgcagtggtgc-aatctcagctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctaccgagtaactgggacaacaggcatgcgcca----------------atagccggctaattttgtatttttagtagaggtggcg-ttcaccatgttgaccaggctagtctcgaactcctaacctcaagtgatccgcc--cacctcagcctcccaaagtgctaagattacaggtgt--gagccaccacacacggcctcggctatttatagcagtgtgagaacgggctaacacaGGGTCTTTCCTCACTGgagagag-agggtgggaggagagagag--agggtgggaggggagagaggggaga-----------g
s panTro4.chr19              58940705 470 +  63644993 ctgt-agtttcctgaggccaccctagccatgcggaattgtaagtcaattaaat-------ctcttttt------ttt-----------------------------ttttttt-ttttttttgagactgagccccc--ctgtcatccaggctggtgtgcagtggtgc-aatctcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctaccgagtaactgggacaacaggcatgcgcca----------------atagctggctaattttgtatttttagtagaggtggcg-ttcaccatgttgaccaggctagtctcgaactcctaacctcaagtgatccgcc--cacctcagcctcccaaagtgctaagattacaggtgt--gagccaccgcacacggcctcggatatttatagcagtgtgagaacgggctaacacaGGGTCTTTCCTCATTGGAgagag-agggtgggaggagagagag--agggtgggaggggggagaggggagaaatgggggagag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55801853 461 +  60714840 ctgt-agtttcctgaggcctccccagtcacgcggaactgtaagccaattaaac-------ctcttttt------ttg-----------------------------tttgtttgtttgttttgagactgagcctca--ctgtcatcgaggctggggtgcagtggtgc-aatctcagctcgctgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctaccgagtaactgggacaacaggcatgcgccc----------------ataccgggctaattttgtgtttttagtagtgatggagtttcaccatgttgaccaggctagtctcgaactcctgacctcaagtgaaccgcc--cacctcagcctcccaaagtgctcagattacaggtgt--gagccaccacacacggcctcgggtatttatagcagtgtgagaacggactaacacaGGGTCTTTCCCCATTGgagagag-agggtaggaggagagagag--agggtgggaagggagagaggggaga-----------g
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102571008 458 - 106955855 ttgt-agtttcctgaggccaccccagccatgcggaactgtgagtcaatgaaaccatgaaacttttttt------ttt-----------------------------ttttttttttttttttgaaaatgaacctcc--ctgtcatccaggctggagtgcagtggtgcaaatctcaactcactgcaacctttgcctcccaggttcaagcgattctcctgcctcagcctaccgagtaactgggacaacaggcatgcgcta----------------ataccgggctaattttgtatttttagtagagatggcgtttcaccgtgttgaccaggctagtctcgaactcctgacctcaagtgatccgtccacacctcatcctcccaaagtgctaagattacaggcgc--gagccaccacacacagcctcgggtatttacagcagtgtgagaacagactaacacaGGGTCTCTACTCATTGGAGGGAG-AGGGTGGGAAgggaga---------------cggggagacggggag-----------a
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54878650 457 +  59248254 ttgtaagtttcctgaggcctccccagccatgcagaactgtgagtcaattaaac-------ctcttttt-------------------------------------------ttttgttttttgagactgagcctca--ctgtcatgcaggctggagtgcagtggtgc-aatctcagttcactgcaacctccacctcccgggttcaagcgattcttctgcctcagcctactgagtagctgggacaacaggcatgcgcca----------------acaccaggctaattttgtatttttagtagagatggagtttcaccatgttgaccaggctagtctcgaactcctgacctcaagagatccgcc--cacctcagcctcccaaagtgctcagattacaggcgc--aagctaccacactcggcctcggatatttatagcagtgcgagaagggactaacacaGGGTCTTTCCTCATTGgagagagaagggagaaaggggagagagagagggtgggagggaagagaggagaga-----------g
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47001979 469 +  51301725 ttgtaagtttcctgaggcctccccagccatgcagaactgtgagtcaattaaac-------ctcttttt------ttt------------------tgtt-------ttttgttttgttttttgagactgagcctca--ctgtcatgcaggctggattgcagtggtgc-aatctcagttcactgcaacctccacctcccaggttcaagcgattcttctgcctcagcctactgagtagctgggacaacaggcatgcgcca----------------acaccaggctaattttgtatttttagtagagatggagtttcaccatgttgaccaggctagtctcgaactcctgacctcaagagatccgcc--cacctcagcctcccaaagtgctcagattacaggcgc--aAGCTACCACACTCGGCCTGGGATATTTATAGCAGTGCCAGAAGGGACTAACACAGGGTCTTTCCTCAttggggagagaagggagagaggggagagagagagggtgggagggaagagaggggaga-----------g
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               46714512 474 +  50890351 ttgtaagtttcctgaggcctccccagccatgcagaactgtgagtcaattaaac-------ctcttttttttgttttt------------------tgtttt----gttttgttttgctttttgagactgagcctca--ctgtcatgcaagctggagtgcggtggtgc-aatctcagttcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctactgagtagctgggacaacaggcatgcgcca----------------acaccaggctaattttgtatttttagtagagatggagtttcaccatgttgaccaggctagtctcgaactcctgacctcaagagatccgcc--cacctcagcctcccaaagtgctcagattacaggcgc--aagctaccacacttggcctcggatatttatagcagtgcgagaagggactaacacaGGGTCTTTCCTCATTGgagagag-agggtgggaggggagagag---gggagagaagggagagaggggaga-----------g
i chlSab2.chr6              C 0 I 264
s calJac3.chr22              45288772 452 +  49145316 gtgtaagtttcctgagggctctccagccatgcggaactgtgaatgcattaaac-------ctctttcc------ttcataaattacccagtctcaggtttttgtgtgtttgtttggtttttcgagactgagtctcactctgtcacccaggctgcagtgcagtggcac-gatctcagcttgctgcaacctctgcctcccatgttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgtgtaccaccatgcagggctaaccatgccaggctaattttctatttttaatagtgagggagtttcaccatgttgaccaggctggtctcaaactcctaacctcaagtggtccgtc--tacctcggcctcccaga-tgctgggattacaggtgcgagagccaccacacacagtcttgggtatttatggcagcgtgagaatggactagtacaGG-------------GGAGAGAG-----------------------------------------------------------
i calJac3.chr22             C 0 C 0
e rheMac3.chr19              59861665 1040 +  64156825 I

a score=3479.000000
s hg38.chr19_GL949751v2_alt      4351 9 +   1002683 gggagaaat
s panTro4.chr19              58941175 9 +  63644993 gggagaaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55802314 9 +  60714840 gggagaaat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102571466 9 - 106955855 cggggagat
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54879109 7 +  59248254 gggagag--
i macFas5.chr19             I 2 I 5
s papAnu2.chr19              47002450 7 +  51301725 ggaagag--
i papAnu2.chr19             I 2 I 454
s calJac3.chr22              45289224 9 +  49145316 AGCAGACCT
i calJac3.chr22             C 0 C 0
e chlSab2.chr6               46714986 264 +  50890351 I
e rheMac3.chr19              59861665 1040 +  64156825 I

a score=12335.000000
s hg38.chr19_GL949751v2_alt      4360 27 +   1002683 gggggag-ggggggagaggggggagaga
s panTro4.chr19              58941184 28 +  63644993 gggggagcggggggagaggggggagaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55802323 28 +  60714840 gggggaaaggtgggagagcggggagaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102571475 17 - 106955855 gggggag-----------agggaggtga
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54879121 26 +  59248254 gggtggg-ag-ggaagagaggggagaga
i macFas5.chr19             I 5 I 293
s papAnu2.chr19              47002911 27 +  51301725 gggagag-agagggagagaggggagagg
i papAnu2.chr19             I 454 C 0
s calJac3.chr22              45289233 12 +  49145316 -------------GGGGTAGGGGAG---
i calJac3.chr22             C 0 C 0
e chlSab2.chr6               46714986 264 +  50890351 I
e rheMac3.chr19              59861665 1040 +  64156825 I

a score=3747.000000
s hg38.chr19_GL949751v2_alt      4387 10 +   1002683 gaATGAATAT
s panTro4.chr19              58941212 10 +  63644993 gAATGAATAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55802351 10 +  60714840 gAATGAATAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102571492 10 - 106955855 gaatgaatat
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47002938  5 +  51301725 ---tgacG--
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45289245  5 +  49145316 -----AATAT
i calJac3.chr22             C 0 C 0
e chlSab2.chr6               46714986 264 +  50890351 I
e macFas5.chr19              54879147 293 +  59248254 I
e rheMac3.chr19              59861665 1040 +  64156825 I

a score=3600.000000
s hg38.chr19_GL949751v2_alt      4397 1 +   1002683 G
s panTro4.chr19              58941222 1 +  63644993 G
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55802361 1 +  60714840 G
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102571502 1 - 106955855 g
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59862705 1 +  64156825 G
i rheMac3.chr19             I 1040 C 0
s macFas5.chr19              54879440 1 +  59248254 g
i macFas5.chr19             I 293 C 0
s papAnu2.chr19              47002943 1 +  51301725 G
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715250 1 +  50890351 G
i chlSab2.chr6              I 264 C 0
s calJac3.chr22              45289250 1 +  49145316 G
i calJac3.chr22             C 0 C 0

a score=422431.000000
s hg38.chr19_GL949751v2_alt      4398 132 +   1002683 AGAATGAATGTACCAGGAG----CTTTTAtcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagctggaaatgtactgacggatccccaaggattcagtaa--------------tgtgaccaagtggaggag---
s panTro4.chr19              58941223 132 +  63644993 AGAATGAATGTACCAGGAG----CTTTTAtcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagctggaaatgtactgacggatccccaaggattcagtaa--------------tgtgaccgaggtgacgag---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55802362 133 +  60714840 AGAATGAATGTACCAGGAG----CTTTTAtcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagctggaaatgtactgatggatccccaaggattcagtaa-------------TTGTGACCAAGTGGAGGAG---
i ponAbe2.chr19             C 0 I 960
s nomLeu3.chr10             102571503 124 - 106955855 agaatgaATGTACCAGGAG----CGTTTAtcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagctggaaatgtactgacggatctccgagga----------------------tgtgaccaagtggaggag---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59862706 136 +  64156825 AGAATGAATGTACCAGGAGCTGTCTTTTCtcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagccggaaatgtactgatggatccccaaggattcagtaa--------------tgtgaccaagcagaggag---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54879441 136 +  59248254 agaATGAATGTACCAggagctgtcttttctcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagctggaaatgtactgatggatccccaaggattcagtaa--------------tgtgaccaagcagaggag---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47002944 136 +  51301725 AGAATGAATGTACTAGGAGCTGTCTTTTCTCCTTTGCAGGAGCGCCACCTGGAGGTAGGAGGTGAAGTCTGCAGAGAGAAGCTGGAAATGTACTGATGGATCCCCAAGGATTCAGTAA--------------TGTGACCAAGCAGAGGAG---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715251 136 +  50890351 AGAATGAATGTACCAggagctgtcttttctcctttgcaggagcgccacctggaggtaggaggtgaagtctgcagagagaagctggaaatgtactgatggatccccaaggattcagtaa--------------tgtgaccaagcagaggag---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45289251 132 +  49145316 GCAATGA----ACCAGGAGCTGTCTTTTATCCTTAGcaggagcgccacctggaggtaggaggtgaagtctgccgcgagaagctggaaatggactgacagatccccaagggttcagtaa--------------cgtgaccaaggagtggag---
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19456713 143 - 122678785 AGAATGAATGAATCAGGT-----CTTTCTTGCTTTCCACCAGCGCCACCTGGAGGTGGAAGGTGAGCCCCGCAGAGAG--GCTGGAACTGTACAGATGGA-CCCCACAGACAGAGCAAGCCAACCTTCCAGCTGTG--CAGCTGGAGGAGGGA
i canFam3.chr1              N 0 C 0

a score=506927.000000
s hg38.chr19_GL949751v2_alt      4530 194 +   1002683 ctgcattt-------------------acaggca------------tcaaggg-aactgcaggtgagaggtctgcagcCT------TGCAAGAGAGTGG--GGGAAGCAGGAGAAGCTCCACGTGG--GGAGATAAAGGAAAAGCTGACCACGCTTCCTCCACGTTGCAGGCAACCTGCCGAAAGGattttaatcactgagctgacactgtatttttttcttgtatgtgacttttt
s panTro4.chr19              58941355 194 +  63644993 ctgcattt-------------------acaggca------------tcaaggg-aactgcaggtgagagatctgcagcCT------TGCAACAGAGTAG--GGGAAGCAGGAGAATCTCCACGTGG--GTAGATAAAGGAAAAGCTGACCACGCTTCCTCCACGTTGCAGGCAACCTGCCAAAAGGattttaatcactgagctgacactgtatttttttcttgtatgtgacttttt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102571627 195 - 106955855 ctgcattt-------------------acaggca------------tcgagggaaactgcaggtgagagatctgcagcCT------TGCAAGAGAGTGG--GGGAAGCAGGAGAAGCTCCACGTGA--GGAGATAAAGGAAAAGCTGACCACGCTTCCTCCACGTTGCAGGCAACCTGCCAAAAGGattttaattactgagctgacactgtatttttttcttgtatgtgacttttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59862842 194 +  64156825 ctgcgttt-------------------acaggca------------tcagggg-aaccgcaggtgagagatctgcagcCT------TGCAAGAGAGTGG--GGGAAGGGGGAGAAGCTCCACATGT--GGAGATAAAGGAAAAGCTGACCACACTCCCTCCACGTTGCAGGCAACCTGCCAAAAGGATTTTAATTACTGAGCTGACACTATATTTTTTTCTTGTATGTGACTTTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54879577 194 +  59248254 ctgcgttt-------------------acaggca------------tcagggg-aactgcaggtgagagatctgcagcCT------TGCAAGAGAGTGG--GGGAAGCGGGAGAAGCTCCACATGT--GGAGATAAAGGAAAAGCTGACCACGCTCCCTCCACGTTGCAGGCAACCTGCCATAAGGATTTTAATTACTGAGCTGACACTATATTTTTTTCTTGTATGTGACTTTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47003080 194 +  51301725 CTGCGTTT-------------------ACAGGCA------------TCAGGGG-AACTGCAGGTGAGAGATCTGCAGCCT------TGCAAGAGAGTGG--GGGAAGCGGGAGAAGCTCCACATGG--GGAGATAAAGGAAAAGCTGACCACGCTCCCTCCACGTTGCAGGCAACCTGCCAAAAGGATTTTAATTACTGAGCTGACACTATACTTTTTTCTTGTATGTGACTTTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715387 194 +  50890351 ctgcgttt-------------------acaggca------------tcagggg-aactgcaggtgagagatccgcagcct------tgcgagagagTGG--GGGAAGCGGGAGAAGCTCCACATGG--GGAGATAAAGGAAAAGCTGACCATGCTCCCTCCACCTTGCAGGCAACCTGCCAAAAAGATTTTAATTACTAAGCTGACACTGTATTTTTTTCTTGTATGTGACTTTTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45289383 200 +  49145316 ttgccttt-------------------gcaggca------------ccagagg-aactgcaggtgagacatctgcggcCTTATGAGTGTGAGAGGGTGG--GGGAAGCAGGAGGAGCTCCACGTGG--GGAGATAAAGAAAAAGCTGACCACGCTCCCTCTAAGTTGCAGGCAACCTGCCAAAAGCATTTTAATTACTGAGCTGACACTGTATTTTTTTCTTGTATGTAACttttt
i calJac3.chr22             C 0 I 312
s canFam3.chr1               19456856 209 - 122678785 CTGCAGGTGAGAACTGTGGGGGAGGGGAGAGGGAGAAGGGTGGAGTCCAGGGG-GACTGCAGGTGAGAA--CTGTGGCCT-----------GGGGATGGCAGGGGAGGAGCAGAAGTTCCAAGTGGGAGGAAATAAAGAAAAAGCTGACCATGCTCACTGCA-GCTGCAGGCAACCTGCCAAAAGcatttcaattactgaac--------tatttttcccttgcatgtgact----
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55802495 960 +  60714840 I

a score=85137.000000
s hg38.chr19_GL949751v2_alt      4724 32 +   1002683 taagaagcagctgg-aagtctttatgacctaag
s panTro4.chr19              58941549 32 +  63644993 taagaagcagctgg-aagtctttatgacctaag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102571822 32 - 106955855 taagaagcagctgg-aagtctttatgacctaag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59863036 33 +  64156825 TAAGAAGCAGCTGGAAAGTCTTTATGACCTAAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54879771 33 +  59248254 TAAGAAGCAGCTGGAAAGTCTTTATGACCTAAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47003274 32 +  51301725 TAAGAAGCAGCTGG-AAGTCTTTATGACCTAAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715581 32 +  50890351 AAAGAAGCAGCTGG-AAGTCTTTATGACCTAAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45289895 32 +  49145316 TAAGAAGCAGCTGA-AAGTCTTTATGACCTAAG
i calJac3.chr22             I 312 C 0
s canFam3.chr1               19457065 24 - 122678785 --------aattgg-acacctttattacctaag
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55802495 960 +  60714840 I

a score=530979.000000
s hg38.chr19_GL949751v2_alt      4756 225 +   1002683 atgactataaaaattatgagaaggccgggcgcagtggctcacacctgtaatcctagcac-tttgggaggccaaggtgggcggatcacttaaggtcagga-gttcgagaccagcctggccaacatggcgaaaccctgtctctactaaaaat-acaaaaattagctgggcgtggtagcacatgcttgtaatcccagctgctcgggaggctgaggcaggagaatcacttga
s panTro4.chr19              58941581 225 +  63644993 atgactataaaaattatgagaaggccgggcgcagtggctcacgcctgtaatcctagcac-tttgggaggccaaggtgggcggatcacttaaggtcagga-gttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaaat-acaaaaattagctgggcgtggtagcacatgcttgtaatcccagctgctcgggaggctgaggcaggagaatcacttga
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102571854 227 - 106955855 acgactataaaaattatgagaaggccgggcgcagtggctcacacctgtaatcctagcacttttgggaggccaaggtgggcggatcacttaaggtcaggattttcaagaccatcctgtctaactgggcgaaaccctgtctctactaaaaat-acaaaaattagctgggcgtggaagcacatgcttgtaatcccagctgctcgggaggctgaggcaggagaatcacttga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59863069 225 +  64156825 ATGACTATAAAAATTATGAGAAggccaggcgcagtggctcacgcctataatcccagcac-tttgggaggccaaggtgggcggatcacttaaggtcagga-gttcgagaccagcctggccaacatgacaaaaccctgtctctgctaaaaat-acaaaaattagctgggtgtggtagcacatgcctgtaatcccagctgctcgggagactgaggcaggagaatcacttga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54879804 225 +  59248254 ATGACTATAAAAATTATGAGAAggccaggcgcagtggctcacgcctataatcccagcac-tttgggaggccaaggtgggcggatcacttaaggtcagga-gttcgagaccagcctggccaacatggcaaaaccctgtctctgctaaaaat-acaaaaattagctgggtgtggtagcacatgcctgtaatcccagctgctcgggagactgaggcaggagaatcacttga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47003306 225 +  51301725 ATGACTATAAAAATTATGagaaagccaggcgcggtggctcacgcctataatcccagcac-tttgggaggccaaggtgggcggatcacttaaggtcagga-gttcgagaccagcctggccaacatggcaaaaccctgtctctactaaaaat-acaaaaattagctgggtgtggtagcacatgcctgtaatcccagctgctcgggagactgaggcaggagaatcacttga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715613 226 +  50890351 ATGACTATAAAAATTATAAGAAggccgggcgcggtggctcacgcctgtaatcctagcac-tttgggaggccaaggtgggcagatcacttaaggtcagga-gttcaagaccagcctggccaacatggcaaaaccctgtctctactaaaaataacaaaaattagctgggtgtggtagcacatgcctgtaatcccagctgctcgggaggctgaggcaggagaattgcttga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45289927 225 +  49145316 ATGACTATAAAAATTATGAGAAGTccaggcacgatggctgatgcctgtaaccccagcgc-tttgggaggccaaggtgtgtggatcatttgaggtcagga-gttcaagaccagcctggccaacgtggtaaatctccgtctctactaaaaac-acaaaacttagctgggcgtggtggctcatgcctataattccagatgctcgggagactgaggcaggagaattacttga
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19457089   0 - 122678785 C
e ponAbe2.chr19              55802495 960 +  60714840 I

a score=53009.000000
s hg38.chr19_GL949751v2_alt      4981 28 +   1002683 acctgggaggcagaggttgcagtgaacc
s panTro4.chr19              58941806 28 +  63644993 acctgggaggcagaggttgcagtgaacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55803455 28 +  60714840 acctgggaggcagaggttgcagtgaatc
i ponAbe2.chr19             I 960 C 0
s nomLeu3.chr10             102572081 28 - 106955855 atctgggtggcagaggttgcagtgaacc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59863294 21 +  64156825 acctgggaagcag-------agtgagcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54880029 21 +  59248254 acctgggaagcag-------agtgagcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47003531 20 +  51301725 acct-gcaagcag-------agtgagcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715839 28 +  50890351 acctgggaggcagaggttgcagtgagcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45290152 28 +  49145316 aaccaggaggcagaggttgcagtgagct
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19457089  0 - 122678785 C

a score=1588176.000000
s hg38.chr19_GL949751v2_alt      5009 532 +   1002683 atgactgcaccatagcactccaggctgggcaacagagcaagactgtctc---------------------------------------aaaaaaaaaaaaagttatgagacttgctttacatgtcacccaagggcacaggtaaagaattagacctaggagttgggt-tgatagggcaatgggaa------aaaagaaaaaaattgtttactg-aATCAAGGGAATAATCACACCTACATCTTTGCAACTCACGTGCTTACAACtag---ggcaaccaaatt-----gttccggttcgcccaggattttctctggtttagccctgaaatttctgtgtcctgggaaattcctcaTTTCTATTTTAAAACCGAAAGTCCCACATCCTAAG--------ACACACACACACGCCCCTGCACACACCAATCCTGGTAAAACGGTAAC-AGTTGGTCATACTATCTACAACAACCCTATTCGAGATCTGTGTCT-T--CACGATGAGGAAAGGCACAT-GCAGTTCTGGAGATTTTAACACGTGTTCCCAAGG-TCACACAACCTGCCCTTGTATCCAGCA----CTGAAAGCAGATGACTCTCCTCTTTC
s panTro4.chr19              58941834 532 +  63644993 atgattgcaccatagcactccagcctgggcaacagagcaagactgtctc---------------------------------------aaaaaaaaaaaaagttatgagacttgctttagatgtcacccaagggcacaggtaaagaattagacctaggagttgggt-tgatagggcaatgggaa------aaaagaaaaaaattgtttactg-aATCAAGGGAATAATCACACCTACATCTTTGCAACTCACGTGCTTACAACtag---ggcaaccaaatt-----gttccggttcgcccaggattttctctggtttagccctgaaatttctgtgtcctgggaaattcctcatttcTATTTTAAAACCGAAAGTCCCACATCCTAAG--------ACACACACACACGCCCCTGCACACACCAATCCTGGTAAAACGGTAAC-AGTTGGTCATGCTATCTACAACAACCCTATTCGAGATCTGTGTCT-T--CATGATGAGGAAAGGCACAT-GCAGTTCTGGAGATTTTAACACGTGTTCCCAAGG-TCACACAACCTGCCCTTGTATCCAGCA----CTGAAAGCAGGTGACTCTCCTCTTTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55803483 542 +  60714840 atcattgcaccacagcactccagcctgggcaacggagcaagactgtctcaa------------------------------aaaaaaaaaaaaaaaaaaaaGTTATGAGACTTGCTTTAGATGTCACCCAAGGGCACAGGTAAAGAATTAGACCTAGGAGTTGGGTATGATAGGGCAATGGGGG------AAAAGAAAAAAATTGTTTACTG-AATCAAGGGAATAATCACACCTCCATCTTTACAACTCACGTGCTTACAACtag---ggcaaccaaatt-----gttccggtttgcccaggattttctctggtttagccctgaaatttctgtgtcctgggaaattcctcaTTTCTATTTTAAAACTGAAAGTCCCACATCCTAAG------ACACACACACACACGCCCCTGCACACACCAATCCTGGTAAAACGGGAAC-AGTTGGTCATACTATCTACAACAACCCTATTCGAGATCTGTGTCT-C--CACGATGAGGAAAGG--TAT-GGAGTTCTGGAGATTTTAACACATGTTCCCAAGG-TCACACCACCTGCCCTTGTATCCAACA----CTGAAAGCAGAGGACTCTCCTCTTTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102572109 539 - 106955855 atgattgcaccacagcactccagcctgggcaacagagcaagactgtccc--------------------------------ccacaaaaaaaaaaaaaaaagttatgagacttgctttagatgtcacccaagggcacaggtaaagaattagacctaggagttgggtatgatagggcaatggggg------aaaag-aaaaaattgtttactg-aATCAAGGGAATAATCACACCTACATCTTTGCAACTCACGTGCTTACAACtag---ggcaaccaaatt-----gttccggttcgcccaggattttctctggtttagccctgaaatttctgtgtcctgggaaattcctcaTTTCTATTTTAAAACCGAAAGTCCCACATCCTAAG------ACACATAAACACACGCCCCTGCACACACCAATCCTGGTAAAACGGGAAC-AGTTGGTCATACTATCTacaacaaccctattcgagatctgtgtct-c--cacgatgaggaaagg--cat-ggagttctggagattttaacacatgttcccaagg-tcacacaacCTGCCCTTGTATCCAACA----CTGAAAGCAGATGACTCTCCTCTTTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59863315 571 +  64156825 atgactgcaccactgcactgcagcctgggcgacagagcaagactgtctcgaaaaaaaacaaaaaacaaaaa-aaaaaaaaaaaaaGGAAAAGAAAAAAGAAAATTTGAGACTTGCTTTAGATGTCGCCCAAGGGCACAGGTAAAGAATTAGATCTAGGAGTTGGGTGTGATAGGGCAATGGGGG------AAAAGAAAAACATTGTTTACTGAAATCAAGGGAATAATCACACCTGCATCTTTACAACTCATGTGCTTACAACtag---ggcaaccaaatt-----gttctggtttgcccaggattttctctggtttagccctgaaatgtctgtgtcctgggaaattcctcaTTTCTATTTTAAAACCGAAAGTCCCACATCCTAAG--------ACACACACACACGCCCCTGCACACACCAATCCTGGTAAAGCAGAGAC-AGTTGGTCATACTATCCACAACAACCCTATTCGAGATCTGTGTCT-C--CACCATGAGGAAAGG--CATGGGAGTTCTGGAGATTTTAACACATGTTCCCAAGG-TCATACCACCTGCCCTTGTATCCAAAA----CGGAAAGCAGACGACTCTCCTCTTTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54880050 572 +  59248254 atgactgcaccactgcattgcagcctgggcgacagagcaagactgtctcaaaaaaaaaacaaaaacaaaaacagaaaaaaaaaAAGGAAAAGAAAAAAGAAAATTTGAGACTTGCTTTAGATGTCGCCCAAGGGCACAGGTAAAGAATTAGATCTAGGAGTTGGGTGTGATAGGGCAATGGGGG------AAAAGAAAAACATTGTTTACTGAAATCAAGGGAATAATCACACCTGCATCTTTACAACTCATGTGCTTACAACtag---ggcaaccaaatt-----gttctggtttgcccaggattttctctggtttagccctgaaatgtctgtgtcctgggaaattcctcatttcTATTTTAAAACCGAAAGTCCCACATCCTAAG--------ACACACACACACGCCCCTGCACACACCAATCCTGGTAAAGCAGAGAC-AGTTGGTCATACTATCCACAACAACCCTATTCGAGATCTGTGTCT-C--CACCATGAGGAAAGG--CATGGGAGTTCTGGAGATTTTAACACATGTTCCCAAGG-TCATACCACCTGCCCTTATATCCAAAA----CGGAAAGCAGACGACTCTCCTCTTTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47003551 558 +  51301725 atgactgcaccactgcactgcagcctgggcgacagagcaagactgtctcaa---------------------aaaaaaccaaaaaaaaaaagaaaaaaaaatttatgagacTTGCTTTAGATGTCGCCCAAGGGCACAGGTAAAGAATTAGATCTAGGAGTTGGGTGTGATAGGGcaatggggg------aaaagaaaaacattgtttaCTGAAATCAAGGGAATAATCACACCTGCATCTTTACAACTC--GTGCTTACAACTAG---GGCAACCAAATT-----GTTCTGGTTTGCCCAGGATTTTCTCTGGTTTAGCCCTGAAATGTCTGTGTCCTGGGAAATtcctcatttctattttaaaaccgAAAGTCCCACAtcctaagacacacacacacacacacacgccccagCACACACCAATCCTGGTAAAGCAGAGAC-AGTTGGTCATACTATCCACAACAACCCTATTCGAGATCTGTGTCTCC--CACCATGAGGAAAGG--CATGGGAGTTCTGGAGATTTTAACACATGTTCCCAAGG-TCATATCACCTGCCCTTATATCTGACA----TGGAAAGCAGACGACTCTCCTCTTTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46715867 578 +  50890351 atgactgcaccactgcactgcagcctggacaacagagcaagactgtctcaaaaaaaaaaaaaaaagaaagaaagaaaagaaaagaaaagaaaaaaagaaaaTTTATGAGACTTGCTTTAGATGTTGCCCAAGGGCACAGGTAAAGAATTAGATCTAGGAGTTGGATGTGATAGGGCAATGGGGG------AAAAGAAAAACATTGTTTACTGAAATCAAGGGAATAATCACACCTGCATCTTTACAACTCATGTGCTTACAACtag---ggcaaccaaatt-----gttctggttcgcccgggattttctctggtttagccctgaaatgtctgtgtcctgggaaattcctcatttcTATTTTAAAACTGAAAGTCCCACATCCTAAG--acacatacacacacacacgcccctgcacacaccacTCCTGGTAAAGCAGAGAC-AGTTGGTCATACTATCTACAACAACCCTATTCGAGATCTGTGTCT-C--CACCATGAGGAAAGG--TATGGGAGTTCTGGAGATTTTAACACATGTTCCCAAGG-TCATGCAACCTGCCCTTATATGCAACA----CGGAAAGCAGACGACTCTCCTCTTTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45290180 527 +  49145316 gtgattgcgccacagcactctagcctgggcaacagagcaagactatctt----------------------------------------aaaaaaaaaaaaaTTATGAGACTTGCTTTAGATGTTGCCCAAGGGCACAGGTAAAGAATTAGACCTGGGAGGTGGGTATGATAGGGTAATGGGGG------AAAAGAAAAAAACTGTTTACTG-AATCTATGGAATAATCACACCT-CATCTTTATAACTCATGTGCTTACAACCag---ggcaaccaaact-----gttccggtttgcccaggattttctctggtttagtcctgaaatttctgtgtcctgggaaatccctcaTTTCTATTTTAAAACTCAAAGTCCCACATCCTAAG--------ACAAACACACACGCCCCTGCACACACCAGTCCTGGTAAAACGGAAAC-AGTTGGTCATACTATCTACAGCAACCTTATTCGAGATC--TTTCT-C--CACCATGAGGAAGGG--CAT-GCAGTTCTGCAGATTTTAACACATGTTCCCAAGG-TCACGCAACCTGGCTCTGTATCCAACG----CTGAAAGCAGACAACGCTCCtttttt
i calJac3.chr22             C 0 I 294
s canFam3.chr1               19457089 417 - 122678785 -----------------------------------------------------------------------------------------atgactatgaagggcatgaggcttgcgttagatgttccccaggggcacaggtaaagaaTGAGACCTGTGAGGCAAGTGTGGGAGGGTAAGGGGGGGGGTGCGGGAGGAAAA-------------AGCCATCGTACTTATCACCCCC----CCTTACAGCTCCTACGCTTACAATGAAGATGACAAACAAACTCACTCATTCCTGTTTGCCCAAGGCTTTCTCAATTTTAGC-----------------------------------------------------TCCCACATGGAGGG--------GCA---GCCCCCGCCTCAG----TCCCAGTCCTGGGAAAATGGGGATGGGGGGGTCCTACTGCTGGCAACAACCCCATCAGATATCTGTCTCT-CTTTATGGTGATGA------CAC-GGAGTCCTGGCAATTTTAAGAAATCTTCCTTAGGTTCACGTAACCTGGACGTATTTCCAGTGCCATCTGAAAACAAAGGACACCCC------
i canFam3.chr1              C 0 C 0

a score=131913.000000
s hg38.chr19_GL949751v2_alt      5541 45 +   1002683 CACGATTCTAAGCCTCTTCCCGTAGCATGTCCCATGTGGAGGAGA
s panTro4.chr19              58942366 45 +  63644993 CACGATTCTAAGCCTCTTCCCGTAGCATGCCCCATGTGGAAGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55804025 45 +  60714840 CACGATTCTAAGCCTCTTTCCCCAGCATGTCCCATGTGGAAGAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102572648 40 - 106955855 CGCGATTCTAAGCCTCTTCCCCCAGCATGTCCCATGTGGA-----
i nomLeu3.chr10             C 0 I 822
s rheMac3.chr19              59863886 45 +  64156825 CACGATTCTAAGCCTCTTCCCCCAGCATGTCCCATGTGGAAGATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54880622 45 +  59248254 CACGATTCTAAGCCTCTTCCCCCAGCATGTCCCATGTGGAAGATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47004109 45 +  51301725 CACAATTctaagcctcttcccccagcaTGTCCCATGTGGAAGATg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46716445 45 +  50890351 CACAATTCTAAGCCTCTTCCCCCAGCATGTCCCATGTGGAAGATA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45291001 45 +  49145316 CACAGTTCTAGGTTTCTTCCCCCAGCATTTCCTGTGTGGAAAAGA
i calJac3.chr22             I 294 C 0
s canFam3.chr1               19457506 30 - 122678785 ---------------CTTTCCACAGCTTGCCCCACATGGAAGACA
i canFam3.chr1              C 0 C 0

a score=67845.000000
s hg38.chr19_GL949751v2_alt      5586 20 +   1002683 AAAGTTAAGAAAATGAAACT
s panTro4.chr19              58942411 20 +  63644993 AAAGTTAAGAAAATGAAACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55804070 20 +  60714840 AAAGTTAAGAAAATGAAACT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102573510 20 - 106955855 AATGTTAAGAAAATGCAACT
i nomLeu3.chr10             I 822 C 0
s rheMac3.chr19              59863931 20 +  64156825 AAAGTTAAGAAAATGAAACT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54880667 20 +  59248254 AAAGTTAAGAAAATGAAACT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47004154 20 +  51301725 aaagttaagaaaatgaaact
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46716490 20 +  50890351 AAAGTTAAGAAAATGAAACT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45291046 20 +  49145316 Aaagttaagaaaatgaaact
i calJac3.chr22             C 0 I 1315
s canFam3.chr1               19457536 20 - 122678785 TAAGTTAGGAAAACAGCCAT
i canFam3.chr1              C 0 C 0

a score=111311.000000
s hg38.chr19_GL949751v2_alt      5606 40 +   1002683 GGCCAAAACTTGCTACTGCATTTGTGATTTTAGAAAGTAA
s panTro4.chr19              58942431 40 +  63644993 GGCCAAAACTTGCTACTGCATTTGTGATTTTAGAAAGTAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55804090 40 +  60714840 GGCCAAAACTTGCTACTGCATTTGTGATTTTAGAAAGTAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102573530 40 - 106955855 GGCCAAAACTTGCTACTGCATTTGTGATTTTAGAAAGTAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59863951 40 +  64156825 GGCCAAAACTTGCTACTGCATTTGTGATTTTAGAAAGTGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54880687 40 +  59248254 GGCCAAAACTTGCTACTGCATTTGTGATTTTAGAAAGTGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47004174 40 +  51301725 ggCCAAAACTTGCTACTGCGTTTGTGATTTTAGAAAGTGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46716510 40 +  50890351 GGCCAAAACTTGATGCTGCATTTGTGATTTTAGAAAGTAA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19457556 39 - 122678785 GGGAGACCCTCACTACTGCATTTG-GAAATTAGAAAATAA
i canFam3.chr1              C 0 I 38
e calJac3.chr22              45291066 1315 +  49145316 I

a score=1242277.000000
s hg38.chr19_GL949751v2_alt      5646 556 +   1002683 ATGATCAGACATTATTAAAATTATCAATGCAAAAAGAAAGTGAGACTGAACAGATTGTTTACCTTAACAAGATCAAGTTAAACTCGTATAGGGCTTATATATAATGCCGCTTAAAAGCTCAAGTTTATGCGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTCTGGTGGTCGTTATAGATCTGGCCG-TGGAACTGGTGGATATGAAAACAGAAGGTTCTAAAAACAGCAGAAAAGGGCAACAGTTCTTAGCAGGAGAGACAGTG----------AGGAAAGCTGCAGGTTACTTGGAGACAGTCATCCCAAATGCATTAGAGGAGGTGTAAAAATCTGCCACAGAAGGAACAATGATCCATAGTCAG-AAAAGTTACTGCAGCTTAAGCAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGTGATGTAGTGTCAATTAGAGGTACATCCCTGAGGTCTTT----------------AAAACAAA-ACAAACTCAgccaggcacggtggctcacacctgtaatcccagtgctttgggaagctgaggc
s panTro4.chr19              58942471 554 +  63644993 ATGATCAGACATTATTAAAATTATCAATGCAAAAAGAAAGTGAGACGGAACGGATTGTTTACCTTAACAAGATCAAGTTAAACTTGTATAGGGCTTATATATAACGCCGCTTAAAAGCTCAAGTTTATGCGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTCTGGTGGTCGTTATAGATCTGGCCG-TGGAACTGGTGGATATGAAAACAGAAGGTTCTAAAAACAGCAGAAAAGGGCAACAGTTCTTAGCAGGAGAGACAGTG----------AGGAAAGCTGCAGGTTACTTGGAGACAGTCGTCCCAAATGCATTCGAGGAGGTGTAAAAATCTGCCACAGAAGGAACAATGATCCATAGTCAG-AAAAGTTACTGCAGCTTAAGCAGGAAACCCTTCTTGTTCAGGACTGTCATAGC--CAGTTTGCAAAAAGTGCAGCTATTGATTAATGTGATATAGTGTCAATTAGAGGTACATCCCTGAGGTCTTT----------------AAAACAAA-ACAAACTCAgccaggcacagtggctcacacctgtaatcccagcgctttgggaagctgaggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55804130 558 +  60714840 ATGATCAGACATTATTAAAATTATCAATGCAAAAAGAAAGTGAGACTGAACGGATTGTTTACCTT---AAGATCAAGTTAAACTTGTATAGGGCTTATATATAATGCCGCTTAAAAGCTCAAGTTTATGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTCTGGTGGTCGTTATGGATCTGGCGG-TGGAACTGGTAGATATGAAAACAGAAGGTTCTAAAAACAGCAGAAAAGGGCTACAGTTCTTAGCAGGAGAGACAGTG----------GGGAAAGCTGCAGGTTACTTGGAGACAGTCTTCCCAAATGCATTAGAGGAGCTGTAAAAATCTGCCACAGAAGGAACAATGATCCATAGTCAG-AAAAGTTACTGCAGCTTAAGCTGGAAACCCTTCTTGTTCAGGACTGTTGTAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGTGATGTAGTGTCAGTTAGATGTACATCCCTGAAGTCTTTAAAAC-----------AAAACAAA-ACAAACTCagccaggtgcggtggctcacacctgtaatcccagagctttgggaggctgaggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102573570 572 - 106955855 ATGATCAGACATTATTAAAATTATCAGTGCAAAAAGAAAGTGAGACTGAACGGATTGTTTATCTTAACAAGATCAAGTTAAACTTGTACAGGGCTTATATATAATGCCGCTTAAAAGCTCAAGTTTATGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTCTGGTGGTCGTTATGGATCTGACGG-TGGAACTGGTGGATATGAAAACAGAAGGTTCTAAAAACAGCAGAAAAGGGCTACAGTTCTTAGCAGGAGAGACAGTGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTGGAGACAGTCGTCCCAAATGCATTAGAGGAGGTGTAAAAATCTGCCACAGAAGGAACAATGATCCGTAGTCAGAAAAAGTTACTGCAGCTTAAGGAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGTGATGTAGTGTCAATTAGACGTACATCCCTGAGGTCTTTAAAAC-----------AAAACAAA-ACAAACTCAgccaggcacagtggctcacacctgtaatcccagtgctttgggaggcctaggc
i nomLeu3.chr10             C 0 I 136
s rheMac3.chr19              59863991 551 +  64156825 ATGATCAGACAGTATTAACATTATCAATGCAAAAAGAAAGTGAGACTGAACGGATTGTTTACCTTAACATGATCAAGTTAAACTTGTATAGGGCTTAAATATAATGCTGCTTAAAAGCTCAAGTTTATGGGGGGCAGTTTTGGTGGAAGAAACTCAGGCAGTCCCTCTGGTGGTCGTTACGGATGTGGCAG-TGGAAGTAATGGATAC--------------------------------GGCTACAGTTCTTAGCAGGAGAGACAGTGAGGAGTTGTGAGGAAAGTTGCAGGTTACTTGGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAG-AAAAGTTACTGCCGCTGAAGCAGGAAACCCTTCTTGTGCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTGTTGATTAATGTGATGTAGTGTCAATTAGATGTACATCCCTGAGGTCTTAAAAAACAAAAACAACAACAACAAAAAAAAACTCATccaggcacggtggctcacgcctgtaatcccggcgctttgggaggccgaggg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54880727 551 +  59248254 ATGATCAGACAGTATTAACATTATCAATGCAAAAAGAAAGTGAGACTGAACGGATTGTTTACCTTAACATGATCAAGTTAAACTTGTATAGGGCTTAAATATAATGCTGCTTAAAAGCTCAAGTTTATGGGGGGCAGTTTTGGTGGAAGAAACTCAGGCAGTCCCTCTGGTGGTCGTTACGGATGTGGCAG-TGGAAGTAATGGATAC--------------------------------GGCTACAGTTCTTAGCAGGAGAGGCAGTGAGGAGTTGTGAGGAAAGTTGCAGGTTACTTGGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAG-AAAAGTTACTGCCGCTGAAGCAGGAAACCGTTCTTGTGCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTGTTGATCAATGTGATGTAGTGTCAATTAGATGTACATCCCTGAGGTCTTAaaaaacaaaaacaacaacaacaacaaaaaACTCATccaggcacggtggctcacgcctgtaatcccagcgctttgggaggccgaggg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47004214 582 +  51301725 ATGATCAGACAGTATTAACATTATCAATGCAAAAAGAAAGTGAGACTGAACAGATTGTTTACCTTAACGTGATCAAGTTAAACTTGTATAGGGCTTAAATATAATGCTGCTTAAAAGCTCAAGTTTATGGGGGGCAGTTTTGGTGGAAGAAACTCAGGCAGTCCCTCTGGTGGTCGTTAGGGATGTGGCAG-TGGAAGTGATGGATACAGTAACAGAAGGTTCTAAACACAACAGAAAAGGGCTACAGTTCTTAGCAGGAGAGACAGTGAGGAGTTGTGAGGAAAGCTGCAGGTTACTTGGAGACAGTCGTCCCAAATGCATGAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAG-AAAAGTTACTGCCGCTGAAGCAGGAAACCCTTCTTGTGCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTGTTGATTAATGTGATGTAGTGTCAATTAGATGTACATCCCTGAggtcttaaacaacaacaacaacaacaacaac-aaaaactcatccaggcacggtggctcacgcctgtaatcccagcgctttgggaggccgaggg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46716550 583 +  50890351 ATGATCAGACAGTATTAACATTATCAATGCAAAAAGAAAGTGAGACTGAACGGATTGTTTACCTTAACATGATCAAGTTAAACTTGTATAGGGCTTAAATATAATGCTGCTTAAAAGCTCAGGTTTATCGGGGGCAGTTTTGGTGGAAGAAACTCAGGCAGTCCCTCTGGTGGTCGTTACGGATGTGGCAGTTGGAAGTGATGGATATGGTAACAGAAGGTTCTAAAAACAACAGAAAAGGGCTACGGTTCTTAGCAGGAGAGACAGTGAGGAGTTGTGAGGAAAGCTGCAGGTTACTTGGAGACAGTAGTTCCAAATGCGTTAGAGGAACTGTAAAAATCTGCCACGGAAGGAACGATGATCCATAGTCAG-AAAAGTTACTGCCGCTGAAGCAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAACTGCAGCTGTTGATTAATGTGATGTAATGTCAGTTAGATGTACATCCCTGAGGTCTTaaaaacaaaaaacaaaaaacaaaaa-aaaaCCTCATccaggcatggtggctcacgcctgtaatcccagcgctttgggaggccgaggg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I

a score=195419.000000
s hg38.chr19_GL949751v2_alt      6202 83 +   1002683 aggcagatcacctgaggctgggagattgagaccagcctggctaacatggtgaaaccccgtctctacgaaaaatacaaaaatta
s panTro4.chr19              58943025 83 +  63644993 gggcagatcacctgaggctgggagattgagaccagcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaattg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55804688 83 +  60714840 gagcagatcacctgaggctggaagttggagaccagcctggctaacatggtgaaatcctgatgctactaaaaatacaaaaatta
i ponAbe2.chr19             C 0 I 132
s nomLeu3.chr10             102574278 83 - 106955855 gggcagatcacctgaggctgggagtttgagaccagcctggctaacatggtgaaaccccgtctctactaaaaatataaaaatta
i nomLeu3.chr10             I 136 C 0
s rheMac3.chr19              59864542 83 +  64156825 gggcagatcacctgaggctgggagttggagaccagcctctctaacatggtgaaaccctgtctctactaaaaatacaaaaatta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54881278 83 +  59248254 gggcagatcacctgaggctgggagttggagaccagcctcgctaacatggtgaaaccctgtctctactaaaaatacaaaaatta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47004796 83 +  51301725 gggcagatcacctgaggctgggagttggagaccagcctcgctaacatggtgaaaccctgtctctactaaaaatacaaaaatta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46717133 83 +  50890351 gggcagatcacctgaggccaggagttggagaccaacctggctaacatggtgaaaccctgtctctactaaaaatacaaaaatta
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I

a score=301035.000000
s hg38.chr19_GL949751v2_alt      6285 171 +   1002683 gcccggcatggtggtgggcgcctgtaatccc----agctactcaggaggctaaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagccaagatcgtgccactgcactccagcctgggtgacaagagtgaaactccgtctcaaaaaataaattaaataaataaat
s panTro4.chr19              58943108 171 +  63644993 gccgggcgtggtggcaggcacctgtaatccc----agctactcaggaggctaaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagccaagattgtgccactgcactccagcctggatgctaagagtgaaatgccgtctcaaaaaataaattaaataaataaat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102574361 171 - 106955855 gctgggcgtggtggcaggcacctgtaatccc----agctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagtcaagatcgtgccactgcactccagcctgggtgacaagagtgaaactccgtctcaaaaaataaattaaatagataaat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59864625 175 +  64156825 gtcgggcgtggtggtgggcacctgaaatcccagccagctactcaggagactgaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagacgagattgtgccactgcactctggcatggatgacaagagtgaaactccgtctcaaaaaataaattaaataaataaaG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54881361 175 +  59248254 gtcgggcgtggtggcgggcacctgaaatcccagctagctactcaggagactgaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagccgagatcgtgccactgcactctggcatggatgacaagagtgaaactccatctcaaaaaataaattaaataaataaag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47004879 175 +  51301725 gtcgggcgtggtggcgggcacctgaaatcccagctagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagccgagatcgtgccactgcactccggcatggatgacaagagtgaaactccatctcaaaaaataaattaaataaataaag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46717216 171 +  50890351 gtcgggcgtggtggcgggcacctgaaatcccagctagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggtttcagtgagccgagatcgtgccactgcactccagcatggatgacaagagtgaaactccatctcaaaaaataaattaaataaaT----
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e ponAbe2.chr19              55804771 132 +  60714840 I
e calJac3.chr22              45291066 1315 +  49145316 I

a score=731941.000000
s hg38.chr19_GL949751v2_alt      6456 356 +   1002683 aattagctggacgtggtggcaggcacctgtaatcccagc-tacttgggaggctgaggcaggagaatcacttgagcctgggaggtggaggtt----------------------------------------------gcagtgaccagagatcgtgccactgaacgccagcctgggcaacagagcaagattctgtctca--aaaacaaaaacaaaaacaaaaaaaGGCTCAAGTTTATGAATGAACTGTTCATATCAGGTGATGGTCTTTCAAAATAATGACTG---TTTTGTACCAACTATTGTGCTCATGTGATTGATTGAACAATGCTTCCAAAGAATTTGAAACAATAAGGCAAAGAAACCTAATGTTCATAACAGAAAAAAAAATTAAATGTATAGCACTAGA
s panTro4.chr19              58943279 353 +  63644993 aattagctggacgtggtggcaggcacctgtaatcccagc-tacttgggaggctgaggcaggagaatcacttgagcctgggaggtggaggtt----------------------------------------------gcagtgaccagagatcgtgccactgaacgccagcctgggcaacagagcaagattctgtctca-------aaaaacaaaaacaaaaaaaGGCTCAAGTTTATGAATGAACTGTTCATATCAGGTGATGGTCTTTCAAAATAATGACTG-TTTTTTGTACCAACTATTGTGCTCATGTGATTGATTGAACGATGCTTCCAAAGAATTTGAAACAATAAGGCAAAGAAACCTAATGTTCATAACAGAAAAAAAAATTAAATGTATAGCACTAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55804903 353 +  60714840 aattagtcaggcctggtggcgggcacctgtaatcccagc-tactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggtt----------------------------------------------tcggtgagccgagatcatgccactgaactccagcctgggcaac--agcaagactctgtctcaaaaaaacaaaaacaaaagc-aaaaaaGGCTTAAGTTTATGAATGAACTGTTCATATTAGGTAATGGTCTTTCAAAATAATGACTG-TTTTTTGTACCAACTATTGTACTCATG----TGATTGAACAATGCTTCCAAAGAATTTGAAACAATAAGGCAAAGAAACCTAATGTCCATAACAGCAAAAAAAATTAAATATATAGCACTAGA
i ponAbe2.chr19             I 132 C 0
s nomLeu3.chr10             102574532 346 - 106955855 aattagctggacgtggtggcaggcacctgtagtcccagc-tactcaggaggctgaggcaggagaatcacttgagcctgggaggcggaggtt----------------------------------------------gcagtgacctgagatcgtgccaccgaacaccagcctgggcaacagagcaagattctgtctca-------aaaaaaaaaaac--aaaaaGGCTCAAGTTTATGAATGAACTGTTCATATCAGGTGATGGTCTTTGAAAATAATGACTG-TTTTTTGTATCAACTATTGTGCTCATGTGATTGATTGAACAATGCTTCCAAAGAATTTGAAACAATAAGGCAAAGAAACCTAATGTCCATAACAGAAAAAG-----AAATGTATAGCACTAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59864800 358 +  64156825 ATttagccggccatggtggcaggcacctgtaatcccagc-tacccgggaagctgaagcaggagaatcacttgagc----------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------cagcctgggcaacagagcaagactctgtctcaaaaaaacaaaaacaaaagcaaaaaaCGGCTCAAGTTTATGAATGAACTGTTCATATCAGGTAC---TCTTTCAAAATAATGACCGTTTTTTTGTACCAACTATTGTGCTCACGTGATTGGTTGAACGGTGCTTCCAAAGAATTTGAAACAATAAGTCAAAGAAACCTAATGTCCATAACAGAAAAAAACAATAGATGTATAGCACTAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54881536 358 +  59248254 aTttagccggccatggtggcaggcacctgtaatcccagc-tacccgggaagctgaagcaggagaatcacttgagcccaggaggcggaggtt----------------------------------------------gaagtgacctgagatcgtgccactgaactccagcctgggcaacagagcaagactctgtctcaaaaaaacaaaaacaaaagcaaaaaaCGGCTCAAGTTTATGAATGAACTGTTCATATCAGGTAC---TCTTTCAAAATAATGACCGTTTTTTTGTACCAACTATTGTGCTCACGTGATTGGTTGAACGGTGCTTCCAAAGAATTTGAAACAATAAGTCAAAGAAACCTAATGTCCATAACAGAAAAAAACAATAGATGTATAGCACTAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47005054 358 +  51301725 atttagccggccgtggtggcaggcacctgtaatcccagcttacttgggaagctgaagcaggagaatcacttgagcccaggaggtggaggtt----------------------------------------------gcagtgacctgagatcgtgccactgaactccagcctgggcaacagagcaagactctgtctcaaaaaaacaaaaacaaaagcaaaaaaaggctCAAGTTTATGAATGAACTGTTCATATCAGGTAC---TCTTTCAAAATAATGACCG-TTTTTTGTACCAACTATTGTGCTCACGTGATTGGATGAACGGTGCTTCCAAAGAATTTGAAACAGTAAGTCAAAGAAACCTAATGTccataacagaaaaaaacaatagatgtatagcactaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46717387 357 +  50890351 ATttagccaggcgtggtggcaggcacctgtaatcccagc-tacttgggaagctgaagcaggagaatcacttgagcccaggaggcggaggtt----------------------------------------------gcagtgacctgagatcgtgccactgaactccagcctgggcaacagagcaagactctgtctcaaaaaaacaaaaacaaaagcaaaaaaaGGCTCAAGTTTATGAATGAACTGTTCATATCAGGTAC---TCTTTCAAAATAATGACTG-TTTTTTGTACCAACTATTGTGCTCACGTGATTGGATGAACAATGCTTCGAAAGAATTTGAAACAATAAGGCAAAGAAACCTAATGTCCATAACAGAAGAAAACAATAGATGTATAGCATTAGA
i chlSab2.chr6              C 0 I 27
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I

a score=-7609.000000
s hg38.chr19_GL949751v2_alt      6812  9 +   1002683 AAAATTGA--------t--
s panTro4.chr19              58943632 10 +  63644993 AAAATTGA-------tt--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55805256 17 +  60714840 AAAATTGAttttttttt--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102574878 12 - 106955855 AAAATTCA-----tttt--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59865158  8 +  64156825 --AA---------tttttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54881894 17 +  59248254 --AAttttttttttttttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47005412  7 +  51301725 --a----------tttttt
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e chlSab2.chr6               46717744 27 +  50890351 I

a score=730544.000000
s hg38.chr19_GL949751v2_alt      6821 308 +   1002683 ttttttttttttgagacagggtctcactctgtcacccaggctggagtgc----agtggtgcaatgatggctcactgcagcctccacctcctgggctccagcgatcctcctgcctcagcctctagagtagcccggactacaagcatgcaccaccatgctcagctaatttttgtatttttagtatagacagggttttaccattttccccaggctggtctcgaactcctatgctcaagcaatcaacttgcctcagcctcccaaagtgctgggattacaggcatgaacc----acagagcctggcATGATACTAGAAAAA
s panTro4.chr19              58943642 308 +  63644993 ttttttttttttgagacagggtctcgctctgtcacccaggctggagtgc----agtggtgcaatgatggctcactgcagcctccacctcctgggctccagcgatcctcctgcctcagcctctagagtagcccggactacaagcatgcaccaccatgctcagctaatttttgtatttttagtatagacagggttttaccattttccccaggctggtctcgaactcctatgctcaagcaatcaacctgtctcagcctcccaaagtgctgggtttacaggcatgaacc----acagagcctggcATGATACTAGAAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55805273 306 +  60714840 ttttttttttttgagacagggtctca--ctgtcacccaggctggagtgc----agtggtgcaatgctggctgactgcagcctccacctcctgggctccagcgatcctcctgcctcagcctctagagtagcccggactacaagcatgcaccaccacacccagctaatttttgtatttttagtagaaacagggttttgccattttccccaggctggtctcaaactcctatgctcaagcaatccacctgcctcagcctcccaaagtgctgggattacaggcatgaacc----actgagcctggcATGGTACTAGaaaaa
i ponAbe2.chr19             C 0 I 304
s nomLeu3.chr10             102574890 312 - 106955855 ttttttttttttgagacagggtctcactctgtcacccaggctggagtgc----agtggtgcaatgatgactcactgcagcctccacctcctgggctccagcgatcttcctgcctcagcctctagagtagcctggactacaagcatgcaccaccatatccagctaatttttgtattttcagtagagacagggttttgccattttccccaggctgttctcgaactcctatgctcaagcaatccacctgcctcagcctcccaaagtgctggggttacaggcatgaaccaGTGAGTGAGCCTGGCATGGTACTAGAAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59865166 310 +  64156825 tttttttttttggagacagggtcttactctgtcacccaggctggagtgcagtgagtggtgcaatgatggctcactgcagcctccaccccctgggctccagcgatcctcctgcctcagcctctagagtagcacagactacaagcgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggttttgccattttccccaggctggtctcgaactcctaggctcaagcactctacctgcctcagtcccccaaagtgctgggattacaggcatgaacc----actgcgcctggTGTGGTACTAGAAA--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54881911 310 +  59248254 tttttttttttggagacagggtcttactctgtcacccaggctggagtgcagtgagtggtgcaatgatggctcactgcagcctccacctcctgggctccagcgatcctcctgcctcagcctctagagtagcccagactacaagcgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggttttgccattttccccaggctggtctcgaactcctaggctcaagcaatctacctgcctcagtctcccaaagtgctgggattacaggcatgaacc----actgcgcctggTGTGGTACTAGAAA--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47005419 312 +  51301725 ttttttttttttgagacagggtcttactctatcacccaggctggagtgcagtgagtggtgcaatgatggctcactgcagcctccacctcctgggctccagcgatcctcctgcctcagcctctagagtagcccagactacaagcgtgcaccaccacgcccagctaatttttgtatttttagtagagacaaggttttgccattttccccaggctggtctcgaactcctaggctcaagcaatctacctgcctcagtctcccaaagtgctgggattacaggcgtgaacc----actgcgcctggtgtGGTACtagaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46717771 312 +  50890351 ttgttgttgttggagacagggtcttactctgtcacccaggctggagtgcagcaagtggtgcaatgatggctcactgcagcctccacctcctgggctccagcgatcctcctgcctcagcctctagagtagcccagactacaagcgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggttttgccatttcccccacgctggtctcgaactcctaggctcaagcaatctacctgcctcagtctctcaaagtgctgggattacaggcgtgaacc----actgcgcctggTATGGTACTAGAAAAA
i chlSab2.chr6              I 27 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I

a score=388837.000000
s hg38.chr19_GL949751v2_alt      7129 192 +   1002683 T------TCtttttttttttttgacatttaagttcaggggtacatgggcaggatgtgcaggtttgttacacgggtaaacgtgtgtcatgggggtttgttgtacagatta---------ttttttttctagtgtatttactacttcctgattatcagattattttatcacccagttattaagcctagtacccactagttatttttcct
s panTro4.chr19              58943950 191 +  63644993 T------TC-ttttttttttttgacatttaagttcaggggtacatgggcaggatgtgcaggtttgttacacaggtaaacgtgtgtcatgggggtttgttgtacagatta---------ttttttttctagtgtatttactacttcctgattatcagattattttatcacccagttattaagcctagtacccactagttatttttcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55805883 198 +  60714840 t------tttttttttttttttaacttttaagttcaggggtacatggtcaggacgtgcaggtctgttacatgggtaaacgtgtgtcatgggggtttgttgtacAGATTATTTC---CTTTTTTTTTCTAGTGTAGTTACTACTTCCtgatatacagattattttatcacccaggtattaagcctagtacccactagttattttttgt
i ponAbe2.chr19             I 304 C 0
s nomLeu3.chr10             102575202 151 - 106955855 ----------------TTCTTT--------------------------------------gtttgttacacaggtaaacgtgtgtcatgggggtttgttgtacagattatttc-ttcTTTTTGTTTCTAGTGTATTTACTACTTCCtgatatacagatt-ttttatcacccaggtattaagcccagtacccactagttatttttcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59865476 196 +  64156825 --------Ttttttttttttttaacttttaagttcaggggtacatgtgcaggatgtgcaggtttgttacacaggtaaacgtgtgtcatgggggtttgttgtacagattatttc---ttttttttttctagtgtagttactacttcctgttgtacagattattttatcgcccaggtattaagcctagtacccactagttatttttcct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54882221 197 +  59248254 -------Tttttttttttttttaacttttaagttcaggggtacatgtgcaggatgtgcaggtttgttacacaggtaaatgtgtgtcatgggggtttgttgtacagattatttc---TTTTTTTTTTCTAGTGTAGTTACTACTTCCtgatatacagattattttatcgcccaggtattaagcctagtacccactagttatttttcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47005731 207 +  51301725 tcctttttttttttttttttttaacttttaagttcaggggtacatgtgcaggatgtgcagatttgttacacaggtaaacgtgtgtcatgggggtttgttgtatagattatttctttttttttttttctagtgtagTTACTACTTCCtgatatacagattattttatcacccaggtattaagcctagtacccactagttatttttttt
i papAnu2.chr19             C 0 I 683
s chlSab2.chr6               46718083 200 +  50890351 TTCTT--Tttttttttttttttaacttttaagttcaggggtacatgtgcaggatgtgcaggtttgttacacaggtaaac--gtgtcatgggggtttgttgtacagattatttc---ttttttttttctagtgtagttactacttcctgatacacagattattttatcgcccaggtattaagcctagtactcactggttatttttcct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I

a score=4011.000000
s hg38.chr19_GL949751v2_alt      7321 2 +   1002683 ga
s panTro4.chr19              58944141 2 +  63644993 ga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55806081 2 +  60714840 ga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102575353 2 - 106955855 ga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59865672 2 +  64156825 ga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54882418 2 +  59248254 ga
i macFas5.chr19             C 0 M 20327
s chlSab2.chr6               46718283 2 +  50890351 ga
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e papAnu2.chr19              47005938 683 +  51301725 I

a score=176162.000000
s hg38.chr19_GL949751v2_alt      7323 154 +   1002683 tcctctctctgctaccaccctccaccctctgacaggccccagcatgtgtGAAAAATTCTTATAGTCTTCTAGAAAATACAATAGGTAGCCTTTGGAACATAGGGTATCATAAAGAGAAGCTGTAGAAAATATATTTCTTTGAA----ttttttttttt
s panTro4.chr19              58944143 158 +  63644993 tcctctctctcctaccaccctccaccctctgacaggccccagcgtgtgtGAAAAACTCTTATAGTCTTCTAGAAAATACAATAGGTAGCCTTTGGAACATAGGGTATCATAAAGAGAAGCTGTAGAAAATATATTTCTTTGAAttttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55806083 141 +  60714840 tcctgtctctccta-------ccaccctctgacaggccccagtgtgtgtGAAAAATTCTTGTAGTCTTCTAGAAAATACCATAGGCAGCCTTTGGAACACAGGGTATTATAAAGAGAAGCTGTAGAAAATATATTTCTTTGAA----------TTTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102575355 144 - 106955855 tcctgtctctcctactaccctccaccctctgacgggccccagtgtgtgtGAAAAATTCTTACAGTCTTCTAGAAAATACAATAGTTAGCCTTTGGAACGTAGGGTATTATATAGAGAAGCTGTAGAAAATATATTTCTTTGAA--------------T
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59865674 154 +  64156825 ccctctctctcctaccaccctccaccctctgacaggccccagtgtgtgtGAAAAATTTTTACAGTCTTCTAGAAAGTAAAATAGGTAGCCTTTGGAACATAGGGTATTATATAGAGAAGCTGTAGAAAATATATTTCTTTGAA----TTTTTTTTTTT
i rheMac3.chr19             C 0 I 333
s chlSab2.chr6               46718285 154 +  50890351 tcctctctctcctaccaccctccaccctctgacaggccccagtgtgtgtGAAAAATTCTTATAGTCTTCTAGAAAGTAAACTAGGTAACTTTTGGAACATAGGGTATTATATAGAGAAGCTGTAGAAAATATATTTCTTTGAA----ttttttttttt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e papAnu2.chr19              47005938 683 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=2730.000000
s hg38.chr19_GL949751v2_alt      7477 3 +   1002683 ttt
s panTro4.chr19              58944301 3 +  63644993 ttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55806224 3 +  60714840 TTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102575499 3 - 106955855 TTT
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               46718439 3 +  50890351 ttt
i chlSab2.chr6              C 0 I 443
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e papAnu2.chr19              47005938 683 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59865828 333 +  64156825 I

a score=7656.000000
s hg38.chr19_GL949751v2_alt      7480 15 +   1002683 tttttttACAAATGA
s panTro4.chr19              58944304 15 +  63644993 tttttttACAAATGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55806227 15 +  60714840 TTTTTTTACAAATGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102575502 15 - 106955855 TTTTATTACAAATGA
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e chlSab2.chr6               46718442 443 +  50890351 I
e papAnu2.chr19              47005938 683 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59865828 333 +  64156825 I

a score=236370.000000
s hg38.chr19_GL949751v2_alt      7495 143 +   1002683 TCACTATAATGTTTAAAATATGTTTACCACCTACAG-TTgtgtgctagggaagccataacaaaatgccccccactggggggcttatgggacagaaatggattttct-caccgttctgcaggctggaaatccaagatggaggtgcc
s panTro4.chr19              58944319 143 +  63644993 TCACTATAATGTTTAAAATATGTTTACCACCTACAG-TTgtgtgctagggaagccataacaaaatgccccccactggggggcttataggacagaaatggattttct-caccgttctgcaggctggaaatccaagatggaggtgcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55806242 143 +  60714840 TCACTATAATGTTTAAAATATGTTTACCACCTACAG-TTgtgtgctagggaagccataacaaaataccccccactgggggacttatgatatagaaatggattttct-caccgttctgcaggctggaaatccaagacggaggtgcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102575517 145 - 106955855 TCACTATAATGTTTTAAATATGTTTACCACCTACAGtttgtgtgctagggaagccataacaaattaccccccactggggtgcttatggtaccgaaatggattttctccatagttctgcaggctggaaattcaagatggaagtgcc
i nomLeu3.chr10             C 0 I 2352
s rheMac3.chr19              59866161 143 +  64156825 TCACTATTACGTTTAAAATATGTTTACCACCtgcag-tagtgtgctagggaagccataacaaaataccccccacggggaggcttatggtacaaaaatggattttct-cacagttctgcaggctggaaatccaagatggaggtgcc
i rheMac3.chr19             I 333 C 0
s papAnu2.chr19              47006621 143 +  51301725 tcactattatgtttaaaatatgtttaccaCCTGCAG-TAGTGTGCTAGGgaagccataacaaaataccccCCACgggggggCTTATGGTACAAAAAtggattttct-cacagttctgcaggctggaaatccaagatgGAGGTGCC
i papAnu2.chr19             I 683 C 0
s chlSab2.chr6               46718885 134 +  50890351 TCACTATTGTGTTTAAAATATGTTTACCATCtgcag-tagtgtgctagggaagcc--------ataccccctactggggggcttatggtacaaaaatggattttct--acagttctgcaggctggaaatccaaaatagaggtgcc
i chlSab2.chr6              I 443 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=1390201.000000
s hg38.chr19_GL949751v2_alt      7638 1126 +   1002683 agtagggtcagtttctcccggggtctctctgctttgtatgcagatggccgccttcttgctgtgtctccacgtggtctttcctctggatgtACATATCCTGGTGTCCt-----tttcttttttttttttttgagttggagtcttactctgttgccca-gctggagtgcaatgacacgatctcagctcactgcagcctctgcctcctggattcaagcgattcccctgcctcagcctatcgagtagctgggattacaggcgtgcaccaccgcgcccagctaatttttgtatttttagtagacatggggtttggccatgttggccaggctggtcttgaactcctgacctcaggcgatccgcccacctgggcttcccaaagtgctgaaattacaggcgtgagcca-ccacacGTAGCccctagtgtcttttttatgtccaaatttccttttttcacaacggcctcttgtctctaaatacagtcacattctgagttactgggagttaggattcagcacacgaattttgaggagatgtaattcagcccataaTTAAGCCCTATCCTCATCAGACTGATGATCTGTGCTTTCTCTGAACTAAC-AGGATTTATATATTCCTTTTTAACAGCAAGGAACTCAGGTTCTCCATGGCCCCTTTATGAAGTTGCTCCTGCTGGTACATGACCCTCAGTTAGTTTCCTGAAGTTATTTACAAAGCCACCTCCACATGTGTTGAGCCTCTTCAGTTTAC-TTCAAATCCTGGGCCTGTGCTGCATGGCGGTGCTTTCCACAGATTCATATGTTAGATCttttcta-------------tttttttttctgagacagagtttccctctgtcgcccaggctggagtgcaatggtgtgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagcagggactacaggcgtgtgccactattcccagctaatttttgtatttttagtagaggcagggtttcaccatattggccaggatggtctcgatctcttgaccccatgatcctcccactttgacctcccaaagtgttgggattacaggtgtgagctaccgcgcctggccACATATTAAATCttttttttttttttttttttt
s panTro4.chr19              58944462 1138 +  63644993 agtagggtcagtttctcctggggtctctgtgctttgtatgcagatggccgccttcttgctgtgtctccatgtggtctttcctctggatgtACATATCCTGGTGTCCt-----tttc-tttttttttttctgagttggagtcttactctgttgccca-gctggagtgcaatgacacgatctcagctcactgcagcctctgcctcctggattcaagcgattcccctgcctcagcctatcgagtagctgggattacaggcgtgcaccaccgcgcccagctaatttttgtatttttagtagacatggggtttggccatgttggccaggctggtcttgaactcctgacctcaggcgatccgcccacctgggcttcccaaagtgctgaaattacaggcgtgagcca-ccgcacGTAGCccctagtgtcttttttatgtccaaatttccttttttcacaagggcctcttgtctccaaatacggtcacattctgagttactgggagttaggattcagcacacgaattttgaggagatgtaattcagcccataaTTAAGCCCTATCCTCGTCAGACTGATGATCTGTGCTTTTTCTGAACTAAC-AGGATTTATATATTCCTTTTTAACAGCAAGGAACTCAGGTTCTCCATGGCCCCTTTATGAAGTTGCTCCTGCTGGTACATGACCCTCAGTTAGTTTCCTGAAGTTATTTACAAAGCCACCTCCACATGTGTTGAGCCTTTTCAGTTTAC-TTCAAATCCTGGGCCTGTGCTGCATGGCGGTGCTTTCCACAGATTCATATGTTAGATCTtttctattttttttttttttttttttttttgagacagagtttccctctgtcgcccaggctggagtgcaatggtgtgatctcggctcactgcaacctctgcctcctgggttcaaacaattctcctgcctcagcctcctgagtagcagggactacaggcgtgtgccactattcccagctaatttttgtatttttggtagaggcagggtttcaccatattggccaggatggtctcgatctcctgaccccatgatcctcccactttgacctctcaaagtgttgggattacaggtgtgagctactgcgcccggccACATATTAAATCttttttttttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55806385 1124 +  60714840 agtagggtcagtttctcctggggtctctctgctttgtatgcagatgggcgccttcttgctgtgtctccacatggtctttcctctggatgtacatatcctagtgtctt-----tttt-tttttttttttttgatatggagtcttactctgttaccca-gctggagtgcaatggcacgatctcagctcactgcagcctctgcctcctggattcaagcgattctcctgcctcagcctatcgagtagctgggattacaggcatgcaccactgcgcccggctaa-ttttgtatttttagtagagatggagtttgtccatgttggccaggctggtcttgaactcctgacctcaggcgatccgcccacctgagcttcccaaagtgctgagattataggtgtaagcca-ctgcacGTAGCccctagtgtcttttttatgtccaaatttccttttctcataagggcctcttgtctccaaatacagtcatactctgagttactgagagttaggattcagcacacaaattttgaggagatgtaattcagcccataaTTAAGCCCTATCCTCGTCAGACTCATGATCTGTGCTTTCTCTGAACTAAC-AGGATTTATATATTCCTTTTTAACAGCAAGGAACTCAGGTTCTCCATGGCCCCTTTATGAAGT------TGCTGGTACATGACCCTCAGTTAGTTTCCTGAAGTCATTTACAAAGCCACCTCCACATGTGTTGAGCTTCTTCAGTTTAC-TTCAAATCCTGGGCCTGTGCTGCATGGCTGTGCTTTCCACAGATTCACATGTTAGGTCttttctt-----tctttttttttttttttttgagacagagtttccctctgtcgcccaggctggagtgcaatggtgtgatctcggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagcagggactacaggtgtgtgccaccatgcccggctaatttttgtatttttagtagaggcagggtttcaccatattggccaggatggtcttgatctcttgacctcatgatcctcccacttcgacctcccaaagtgttgggattacaggtgtgagctactgcgcctggccACATATTAAATC--ttttttttttttttttttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59866304 1124 +  64156825 agtagggtcagtttctcctgaggcctctctgctttgtatgcagatggccgccttcttgctgtgtctccacatggtctttcctctggatgtacacaacctagtgtgtc--ttttttt-tttttttttttttgagatggaatcttgctctgttgcccaggctagagtacaatggcatgatctcacctcactgcagcctccgcctcctgagttcaagcgattctcctgcctcagcctctcgagtagccaggattacaggctcaccccagcacgccctgttcatttttgtatttttagtagagatggggcttgggcatgttggccaggctggtctcgaattcctgacctcaggagatccgcccacctgggcttctcaaagtgctgagatcacaggcgtgagcca-ccgcacgtagcccctagtgtcttttttatgtccaaatttccttttttcacaagggcctcttgtctccaaatacagtcacattctgagttactgggtgttaggattcagcacacgaatttt---gagatgtaattcagcccataaTTAAGCTCTATCCTCGTCAGACTGATGATCTGTACTTTCTCTGAACTAACGGGGATTTATATATTCCTTTTCGATAGCAAAGAACTCAGGTTCTCCATGG-CCCTTTATGAAGTTGCTCCTGCTGGTACATGACCCTCAGTTAGTTTCCTGAAGTCACTTACAAAGCCACCTCCACATGTGTTGAGCCTCTTGAGTTTACTTTCAAATCCTGGGCCTGTGCTGCATGGCTGTGCTTCCCACAGATTCACATGTTAGATCttttcta----------------ttttttttgagatggagttttgctctgtcgcccaggctggagtgcaatggcatgatcttggctggctgcaacctccgcctcctgggttcaagcgattctcctacctcagtctcctgagtagctggaattacagatgagcgctaccacgcccagctaatttttgtatatttagtagagacagcttttcaccatattggccaggatggtctcgatctcttgacctcatgatcctcccgcttcaacctcccgaagtgttgggattacaggtgtgagccaccgcgcccggccACATGTTAAATCtttttcttttttctttttttt
i rheMac3.chr19             C 0 I 2658
s papAnu2.chr19              47006764 1127 +  51301725 AGTAGGGTCAGTTTCTCCTGAGCCCTCTCTGCTTTGTATGCAgctggccaccttcttgctgtgtctccacGTGGTCTTTCCTCTGGATGTACACATCctagtgtctcttttttttt-tttttttttttttgagatggaatcttgctccgttgcccaggctggagtgcaatggcatgatctcagctcactgcagcctctgcctcctgagttcaagcgattctcctgcctcagcctcttaagtagccaggattacaggtgcacaccaccacgcccagttaatttttgtatttttagtagagatggggcttggccatgttggccaggctggtctcgaattcctgaccttaggagatccgcccacctgggcttctcaaagtgctgagatcacaggcgtgagcca-ccgcacgtagCCCCTAGTGTCTTTTTtatgtccaaatttccttttttcacaaGGGCCtcttgtctccaaatacagtcacattctgagttaCTGGGCGTTAGGATTTAGCACACGAATTTT---GAGATGTAATTCAGCCCATAATTAAGCTCTATCCTCGTCAGACTGATGATCTGTACTTTCTCTGAACTAACGGGGatttatatattcctttttgATGGCAAAGAACTCAGGTTCTCCATGGCCCCTTTATGAAGTTGCTCCTGCTGGTACATGACCCTCAGTTAGTTTCCTGAAGTCACTTACAAAGCCACCTCCACATGTGTTGAGCCTCTTCAGTTTACTTTCAAATCCTGGGCCTGTGCTGCATGGCTGTGCTTCCCACAGATTCACATGTtagatcttttcta----------------ttttttttgagatggagttttgctctgtcgctcaggctggagtgcaatggcatgatcttggctcgctgcaacctccgcctcctgggttcaagcgattctcctgcctcagtctcctgagtagctggaattacagatgagcgctaccacgcccagctaatttttgtatatttagtagagacagcttttcaccatattggccaggatggtctcgatctcttgacctcatgatcctcctgcttcaacctcccaaagtgttgggattacaggtgtgagccaccgcacgcagccacatgttaaatctttttttttttttttttcttt
i papAnu2.chr19             C 0 I 6
s chlSab2.chr6               46719019 1122 +  50890351 agtagggtcagtttctcctgagccctctctgctttgtatgcagatggccgccttcttgctgtgtctccacgtggtctttcctctggatgtacacatcctagtgtctc------tct-cttttttttttttgagatggaatcttgctccgttgcccaggctggagtgcaatggcatgatctcagctcactgcagcctccgcctcctgagttcaagcgattctcctgcctcagcctctcgagtagccaggattacaggcgcacaccaccacgcccggttgatttttgtatttttagtagagatggggcttggccatgttggccaggctggtctcgaattcctgacctcaggtgatccgcccacctgggcttctcaaagtgctgagattacaggcgtgagccacccgcacatagcccctagtgtcttttttatgtccaaatttccttttttcacaagggcctcttgtctccaaatacagtcacattctgagttactgggcgttaggattcagcacatgaatttt---gagatgtaattcagcccataaTTAAGCTCTGTCCTCGTCAGACTGATGATCTGTACTTTCTCTGAACTAACGGGGATTTATATATTCCTTTTTGATAGCAAGGAACTCAGGTTCTCCATGGCCCCTTTATGAAGTTGCTCCTGCTGGTACATGACCCTCAGTTAGTTTCCTGAAGTCACTTACAAAGCCACCTCCACATGTGTTGAGCCTCTTCAGTTTACTTTCAAATCCTGGGCCTGTGCTGCATGGCTCTGCTTCCCACAGATTCACATGTTAGAtcttttcta----------------ttttttctgagatggagttttgctctgtcgcccaggctggagtgcaatggcatgatcttggctcgctgcaacctccgcctcctgggttcaagcgattctcctacctcagtctcctgagtagctggaattacagatgagcgctaccacgcccagctaatttttgtatatttagtagagacagcttttcaccatattggccaggatggtctcgatctcttgacctcatgatcctcccgcttcaacctcctgaagtgttgggattacaggtgtgagccaccgcacccggccACATGTTAAATCttttttttttttttttttttt
i chlSab2.chr6              C 0 I 4
e canFam3.chr1               19457595   38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e nomLeu3.chr10             102575662 2352 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=177693.000000
s hg38.chr19_GL949751v2_alt      8764 219 +   1002683 gagacagagtcttgctctgtcacccaggctggagtgcaatgatggatctcggctcactgcaagctccgcctcccaggttcatgccattttcctgcctcagcctcccgagtagctgagactacaggcacccgccaccacacctggctaattttttgtatttatagtagagata-----------tgttagcca-ggatggtctcgatctcctgacctcatgatccacccacc
s panTro4.chr19              58945600 219 +  63644993 gagacagagtcttgctctgtcacccaggctggggtgcaatgagggatcttggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgagactacaggcacccgccatcacgcctggctaattttttgtatttatagtagagata-----------tgttagcca-ggatggtctcaatctcctgacctcatgatccacccacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55807509 220 +  60714840 gagacggagtcttgctgtgtcacccgggctagagtgcaatgagggatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgagactacaggcacccgccaccacacccggctaattttttgtatttgtagtagagaca-----------tgttagccagggatggtgtcaatctcctgacctcgtgatccacccgcc
i ponAbe2.chr19             C 0 I 5201
s papAnu2.chr19              47007897 230 +  51301725 gagacagagtctccctctgtcaccctaactggagtgcaatgagggatctgggctcactgcaagctccgcctcccaggttcacgccattctcctggctcagcctcctgagtagctgggactacaggcgcccgccaccacgtccggctaattttttgtatttgtagtagagacagggtttcaccgtgttagcca-ggatggtctcgatcccttgacctcatgatccacctgcc
i papAnu2.chr19             I 6 C 0
s chlSab2.chr6               46720145 230 +  50890351 gagacggagtctcgctctgtcaccctaactggagtgcaatgaggaatctgggctcactgcaagctccacctcccaggttcacgccattctcccggctcagcctcctaagtagctgggactacaggcgcctgccaccacgtctggctaattttttgtatttgtagtagagacagggtttcaccgtgttagcca-ggacggtcttgatcccctgacctcgtgatccacctgcc
i chlSab2.chr6              I 4 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e nomLeu3.chr10             102575662 2352 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59867428 2658 +  64156825 I

a score=12021.000000
s hg38.chr19_GL949751v2_alt      8983 16 +   1002683 tcggcctcccaaagtg
s panTro4.chr19              58945819 16 +  63644993 tcggcctcccaaagtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55812930 16 +  60714840 tcggcctcccaaagtg
i ponAbe2.chr19             I 5201 C 0
s papAnu2.chr19              47008127 15 +  51301725 ttggtct-ccaaagTG
i papAnu2.chr19             C 0 I 1767
s chlSab2.chr6               46720375 16 +  50890351 ttggcctcccaaagtg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e nomLeu3.chr10             102575662 2352 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59867428 2658 +  64156825 I

a score=135279.000000
s hg38.chr19_GL949751v2_alt      8999 265 +   1002683 ctgggattacaggcgtgagccaccgcgcccggccTCATGTTAAATCTTGACACCCAATGTGATCTGAGAGGTTGGGCCTTTGGtgatggcagcagccactccagacggcttgctgctgccatgacgccacctgccccagggaggcccagcccgggctatacacgctatggagccgcagggagccctgccccttccgagttggggcgggagctcccagggtgatgctacagctgtccaaaccccagctgtggatccgagcctccct
s panTro4.chr19              58945835 265 +  63644993 ctgggattacaggcatgagccaccatgcccggccACATGTTAAATCTTGACACCCAATATGATCATAGAGGTTGGGCCTTTGGtgatggcagcagccactccagacggcttgctgctgccgtgacgccacctgccccagggagtcccagcccgggctatacacgctatggagccgcagggagtcctgccccttccgagttggggtgggagctcccagggtgatgctacagctgtccaaaccccagctgtggatctgagcctccct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55812946 265 +  60714840 ctgggattacaggcatgagccaccacgcctggccACATGTTAAATCTTGACACCCAATGTGATCGTAGAGGTTGGGCCTTTGGtgatggcagcagccactccagacggcttgctgctgccatgatgccacctgccacacggaggcccagcccgggctatacacgctatggagccgcagggagccctgccccttccgagttggggcgggagctcctagggtgatgctacagttgtccaaaccccagctgtggatccgagcctccct
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               46720391 265 +  50890351 ctgggatgacaggaatgagccaccgcgcccggccacatgttaaatcttaacatccaatgtgatcgtagaggttgggcctttggtgatggcagcagccactccagatggcttgccgctgccatgacgccaactgccacagggaggcccagctgggactatacactcaatggagccgcagggagtcctgccccttctgagttggggcgggaggtcccagggtgctgcttcagctgtgcaaaccccagctgtggatccgagcctccct
i chlSab2.chr6              C 0 I 1632
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e nomLeu3.chr10             102575662 2352 - 106955855 I
e papAnu2.chr19              47008142 1767 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59867428 2658 +  64156825 I

a score=1515.000000
s hg38.chr19_GL949751v2_alt      9264 8 +   1002683 CAGATCGT
s panTro4.chr19              58946100 8 +  63644993 CAAATCAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55813211 8 +  60714840 CGGATCAT
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               19457595 38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e nomLeu3.chr10             102575662 2352 - 106955855 I
e chlSab2.chr6               46720656 1632 +  50890351 I
e papAnu2.chr19              47008142 1767 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59867428 2658 +  64156825 I

a score=456334.000000
s hg38.chr19_GL949751v2_alt      9272 355 +   1002683 ATCACATATCAAGACTTACTCTtgttgacaaaaagagtcaaactctataaaatatttgaagagatttattctgagccaaatatgataa---------------tgaccatggcccctgacacagccctaaggaggtcctgagaccatgtacccaaggtggtcggggggcagcttggttttatacattttagggaggcgtgaggcatcaatcaaacacatttgagaaatacattggtttggtccagaaaggctggacaatttgaaggaggcagggccttccaggctttaggtaaattaaaacattttctggttgacaattggttgagtttgtctaaagacctgggattaatagagaggaaatattcaggtt
s panTro4.chr19              58946108 355 +  63644993 ATCACATATCAAGACTTACTCTtgttgacaaaaagagtcaaactctataaaatatttgaagagatttattttgagccaaatatgataa---------------tgaccatggcccctgacacagccctaaggaggtcctgagaccatgtacccaaggtggtcggggggcagcttggttttatacattttagggaggtgtgagacatcaatcaaacacatttgagaaatacattggtttggtccagaaaggctggacaatttgaaggaggcagggccttccaggctttaggtaaattaaaacattttctggttgacaattgattgagtttgtctaaagacctgggattaatagagaggaaatattcaggtt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55813219 355 +  60714840 ATCACATATCAAGACTTACTCTtgttgacaaaaagagtcaaactctataaaatattagaagagatttattctgagccaaatatgataa---------------tgaccatggcccctgacacagccctaaggaggtcctgagaccatgtacccgaggtggtcggggggcagcttggttttatacattttagggaggcatgagacatcaatcaaacacatttgagaaatacattggtttggtccagaaaggctggacaatttgaaggaggcagggccttccaggctttaggtaaattaaaacattttctggttgacaattggttgagtttgtctaaagacctgggattaacagagagggaatattcaggtt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59870086 370 +  64156825 ATCACATATCAAGACTTACTCTtgtcgacaagaagaatcaaactctataaaatatttgaagagatttattctgagccaaatatgataatgaaccaaatatgagtgaccatgggccatgacacagccctcaggaggtcctgagaacatgtacccaaggtggtcggggggcatcttggttttatacattttagggaggcatgagacatcaatcaaacacatttgagaaatacattggtttggtccagaaagcctggacaatttgaaggaggcaggggcctccaggctttaggtaaattaaaacattgtctggttgacaattggttgagtttgtctaaagacctgggattaatagacaggaaatattcaaggt
i rheMac3.chr19             I 2658 C 0
s papAnu2.chr19              47009909 355 +  51301725 atcacatATCAAGACTTACTCTTGTCGACAGGAAGAATCAAACTCtataaaacatttgaagagatttattctgagccaaatatgataA---------------TGACCGtggcccgtgacacagccctcaggaggtcctgagaacatgtacccaaggtggtcggggggcatcttggttttatacattttagggaggcatgagacatcaatcaaacacatttgagaaatacattggtttggtccagaaagccTGGACAATTTGAAGGAGGCAGGGGCTTCCAGGCTTTAGGTAAATTAAAACATtgtctggttgacaattggttgagtttgtctaaagacctgggattaaTAGACAGGAAATATTCAAGGT
i papAnu2.chr19             I 1767 C 0
s chlSab2.chr6               46722288 351 +  50890351 ATCACATATCAAGACTTACTCTtgtcgacaagaagaatcaaattctataaaatattggaagagatttattctgagccaaatatgataa---------------tgaccgtggcccatgacacagccctcaggaggtcctgagaacatgtacccaaggtggtcggggggcatcttggttttatacattttagggaggcatgaaac----atcaaacacttttgagaaatacattggtttggtccggaaagcctggacaatttgaaggagacgggggcttccaggctttaggtaaattaaaacattgtctgattgacaattggttgagtttgtctaaagacctgggattagtagacaggaaatattcaaggt
i chlSab2.chr6              I 1632 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e nomLeu3.chr10             102575662 2352 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=457507.000000
s hg38.chr19_GL949751v2_alt      9627 260 +   1002683 aagataaaagattgtggagaccaaggttc-ttttgaagtcttatagtggctgcccttagagacaatagatgacaaatgtttcctactcagaccttcaaaagttgctagattctcagttaacctcctcaggattgggagg--tcctggaggaaaaagatctagcaatgttaacagagatcctttacatatgcaaatattcccccccaccaaggacagctttgcagggccatttaaaaatatggcaaagaaacatgttttggggt
s panTro4.chr19              58946463 261 +  63644993 aagataaaagattgtggagaccaaggttc-ttttgaagtcttatagtggctgcccttagagacaatagatgagaaatgtttcctactcagaccttcaaaagctgctagattctcagttaacctcctcaggattgggaggtttcctggaggaaaaagatctagcaatgttaacagagatcctttacatatgcaaatatt-ccccccaccaaggacagctttgcagggccatttaaaaatatggcaaagaaacatgttttggggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55813574 260 +  60714840 aagataaaagattgtggagaccaaggttc-ttttgaagtcttatagtggctgcccttagagacaatagatgacaaatgtttcctactcagaccttcaaaaggtgctagattctcagttaacctcctcaggattgggagg--tcctggaggaaaaagatctacctatgttaacagagatcctgtacatatgcaaatattcccccccaccaaggacagctttgcagggccatttaaaaatatggcaaagaaacatgttttggggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102578014 261 - 106955855 aaaaaaaaagactgtggaaaccaaggttctttttgaagtcttatagtggctgcccttagagacaatagatgacaaatgtttcctactcagaccttcaaaaggtgctagattctcggttaatctcctcaggattgggggg--tcctggaggaaaaagatctagctatgttaacagagatcttttacatatgcaaatattcccccccaccaaggacagttttgcagggccatttaaaaatatggcaaagaaacatgttttggggt
i nomLeu3.chr10             I 2352 C 0
s rheMac3.chr19              59870456 260 +  64156825 aagataaaagactgtggagaccaaggttc-tgttgaagtcttgtagcggctgcccttagagacaatagatgacaaatgtttcctactcagaccttccaaaggtgctagattctcagttaatctcctcaggattgggagg--tcctggaggaaaaagatctagctaggttaacagagatcctttacatatgcaaatgttctccccaacaaaggacagctttgtagggtcatttaaaaatatggcaaagaaacatggtttggggt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47010264 260 +  51301725 AAGATAAAAGactgtggagaccaaggttc-tgtTGAAGTCTTATAgcggctgcccttagagacaatagatgacaacTGTTTCCTACTCAGACCTTCCAAAGGTGCTAGATTCTCAGTTAATCTCCTCAGGATTGGGAGG--TCCTGGAGGAAAAAGATCTAGCTAGGTTAACAGAGATCCTTTACATATGCAAATGTTCCCCCCAACAAAGGACAGCTTTGTagggtcatttaaaaatatggcaaagaaacatggtttggggt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46722639 259 +  50890351 aagataaaagactgtggagaccaaggttc-tgttgaagtcttatagcggctgcccttagagataatagatggcagatgtttcctactcaggccttccaaaggtgctagattctcagttactctcctcaggattgggagg--tcctggaggaaaaagat-gagcgaggttaacagagatcctttacgtatgcaaatgttccccccaacaaaggacagctttgtagggtcatttaaaaatatggcaaagaaacatggtttggggt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e calJac3.chr22              45291066 1315 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=413592.000000
s hg38.chr19_GL949751v2_alt      9887 188 +   1002683 aaaatatttttattttcttctttgttaggt--aatgttatgccagagtcagattggaaagtaagtcacga----tatatagggctaaataaaacccatctgatgagaatttatggtttgtagggcatgagaccccagaccccttagataagaatctgggcaagat---------aaaaaaaaaaaatcagagctgagtcctca
s panTro4.chr19              58946724 194 +  63644993 aaaatatttttattttcttctttgttaggt--aacgttatgccagagtcagattggaaagtaagtcacga----tatatagggctaaataaaacccatctgatgagaatttatggtttgtagggcatgagcccccagaccccttagataagaatctgggcaagatt---aaaaaaaaaaaaaaaaatcagagctgagtcatca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55813834 190 +  60714840 aaaatatttttattttcttctttgttaggt--aatgttatgccagagtcagattggaaagtaagtcatga----tatatagggctaaataaaacccatctgatgagaatttatagtttgtagggcatgagtccccagaccccttagataagaatctgggcaagat-------aaaaaaaaaaaaaatcagagctgagtcctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102578275 195 - 106955855 aaaatatttttattttcttctttgttaggtaaaatgttatgccggagtcagactggaaagtaagtcacga----tatatagggctaaatacgacacatctgatgagaatttgtggtttgtagggcatgagtccccagaccccttagataagaatctgggcaagat----gaaacaaaaaaaaaaaatcagagatgagttctca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59870716 197 +  64156825 aaaatatttttattttcttctttgttaggt--aatgttatgccagagtcagattggaaagcacgtcgcga----tatatagggctaaataaaacccatctgatgagaatttatggtttgtagggcatgagtccccagaccccttagagaagaatctgggcgagattaaaaaaaaaaaaaaaaaaaatcagagctgagtcctca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47010524 192 +  51301725 aaaatatttttattttcttctttgttaggt--aatgttatgccagagtcagattggaaagcaCATCGCGA----TATATAGGGCTAAATAAaccccatctgatgagaatttatggtttgtagggcatgagtCCCCAGACCCCTTAGAGAAGAATCTGGgcgagatt-----aaaaaaaaaaaaaaatcagagctgagTCCTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46722898 195 +  50890351 aaaatatttttattttcttctttgttaggt--aatgttatgccagagtcagattgtaaagtacgtcacga----tatatagggctaaataaaacccatctgatgagaatttatggtttgtagggcatgagtccccagaccccttagagaagaatctgggcaagatt--taaaaaaaaaaaaaaaatacagagctgagtcctca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45292381 189 +  49145316 aaaatgtttttcttttcttctttgttatgt--cacgttatgtcagagtcaggttggaaagtaagtcacgatatttatttaggatcaaataaaacccatctgatgagaatttgtgctttgtggggcctgactccccagaccctttagatgggaatttgggcaagat------------aaaaacaaatcagagcttagttctca
i calJac3.chr22             I 1315 C 0
e canFam3.chr1               19457595  38 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=1201027.000000
s hg38.chr19_GL949751v2_alt     10075 478 +   1002683 CTATGGTAATTCAGTGAGTGTGACTACCAGCATAGATGTCCATAAAGGATATCCATTAGGGCCACCCATTTTAATAATGTTTGCCAGGACCCTTCAATCAAAACAAAATCCATTCTCAGAATAGCTTAGAATCAAAGGAGGACTTTTTGGG-----------TTTT----------------------------------------------------------------------------------------TTT---------GGTT--CAAGAAGGATTGGGCAAGAAAACTGCAGGGAGTGA-AGGAATGCTGAGCTTTGGAAGCAATTAGAACCAAGAAAACAAAAGCTGAAAGCACTGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAGTCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGCGAGACAGATGGCCACCAAGAACTCCCAAGCTTAAAAAAGAATGACTCTCTGTGGCAAGAAAACAAAGAGACACTCCTCCCC-ACCTTGCTACTCCCTATGTGGCCTCCACAC---TGCAACCTGGGACTGTGTA--GTGAGGGGAGGGGGAGC
s panTro4.chr19              58946918 477 +  63644993 CTATGGTAATTCAGTGAGTGTGACTACCAGCATGGATGTCCATAAAGGATATCCATTAGGGCCACCCATTTTAATAATGTTTGCCAGGACCCTTCAATCAAAACAAAATCCATTCTCAGAATAGCTTAGAATCAAAGGAGGACTTTTTGGG-----------TTTT----------------------------------------------------------------------------------------TTT---------GGTT--CCAGAAGGATTGGGCAAGAAAATTGCAGGGAGTGA-AGGAATGCTGAGCTTTGGAAGCAATTAGAACCAAGAAAACAAAAGCTGAAAGCACTGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAGTCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGCGAGACAGATGGCCACCAAGAACTCCCAAGCTTAAAAAAGAATGACTCTCTGTGGCAAGAAAACAAAGAGACACTCCTCCCC-ACCTTGCTACTCCCCATGTGGCCTCCACAC---TGCAACCTGGGACTGTGTA--GTGAGGGGA-GGGGAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814024 478 +  60714840 CTATGGTAATTCAGTGAGTGTGACTACCAGCATAGATGTCCATAAAGGCTATCCATTAGGGTCACCCATTTTAATAATGTTTGCCAGGACTCTTCAATCAAACCAAAATCCATTCTCAGAATAGCTTAGAATCAAAGGAGGACTTTTTGGG-----------TTTT----------------------------------------------------------------------------------------TTT---------GGTT--CCAGAAGGATTGGGCAAGAAAACTGCATGGAGTGA-AGGAATGCTGAGCTTTGGAAGCAATTAGAACCAAGAAAACAAAAGCTGAAAGCACTGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAGTCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGCGAGACAGATGGCCACCAAGAACTCCCAAGCTTTAAAAAGAATGACTCTCTGTGGCAAGAAAACAAAGAGACACTCCTCCCCTACCTTGCTACTCCCGGTGTGGCTTCCACAC---TGCAACCTGGGACTGTGTA--GTGAGGGGA-GGGGAGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102578470 478 - 106955855 CTATGGTAATTCAATGAGTGTGACTACCAGCATAGATGTCCATAAAGAATATCCATTAGGGTCACCCATTTTAATAATGTTCACCAGGACTCTTCAATCAAAACAACATCCACTCTCAGAATAGCTTAGAATCAAAGGAGGACTTTCTGGG-----------TTTT----------------------------------------------------------------------------------------TTT---------GGTT--CAAGAAGGATTGGGCAAGAAAACTGCAGGGAGTGA-AGGAATGCTGAGCTTTGGAAGCAATTAGAACCAAGAAAACAAAAGCTGAAAGCACTGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAGTCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGCGAGACAGATGGCCACCAAGAACTCCTAAGCTTTAAAAAGAATGACTCTCTGTGGCAAGAAAACGCAGAGACACTCCTCCCCCACCTTGCTACTCCCCATGCGGCTTCCACAC---TGCAACCTGGGACTGTGTA--GTGAGGGGA-GGGGAGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59870913 497 +  64156825 CTATGGTAATTCAATGAGTGTGACTCCCAGCATAGATGTCCATAAAGGATATCCATTAGGGTCACCCATTTTAATACTGTTTGCCAGGACTCTTCAATCAAAACAAAATCCATTCTCAGAATAGCTGAGAATCAAAGGAGGACTTTTTGGTTTTCTG-----TTTTGTT---TTT----------------------------------------------------------------TTT--------TTTTTTT---------GGTT--CAAGAATGATTGAGCAAGAACACTGCAGGGAGTGA-AGGAATGCTGAGCTTTGGAAGCAATTAGAACCAAGAAAACAAAAGCTGAAAGCCTTGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAATCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGTGAGACAGATGGTCACCAAGAACTCCCAAGCTTTAAAAAGAATGACTCTCTATGGCAAGAAAACAGAGAGACACTCCTCCCCCACCTTGCTACTCCCCATGTGGCTTCCACAC---GGCAACCTGGGGCTGTGTA--GTGAGGGGA-GGGGAGC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47010716 500 +  51301725 CTATGGTAATTCAATGAGTGTGACTCCCAGCATAGGTGTCCATAAAGGATATCCATTAGGGTCACCCATTTTAATACTGTTTGCCAGGACTCTTCAATCAAAACAAAATCCATTCTCAGAATAGCTGAGAATCAAAGGAGgactttttggttttctgtttttttttttt---ttt----------------------------------------------------------------ttt--------ttttttt---------ggtt--caagaaTGATTGAGCAAGAACACTGCAGGGAGTGA-GGGAATGCTGAACTTTGGAAGCAATTAgaaccaagaaaacaaaagctgaaagccttGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAATCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGCGAGACAGATGGTCACCAAGAACTCCCaagctttaaaaagaatgacTCTCTGTGGCAAGAAAACAGAGAG--ACTCCTCCCCCACCTTGCTACTCCCCATGTGGCTTCCACAC---GGCAACCTGGGGCTGTGTA--GTGAGGGGA-GGGGAGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46723093 487 +  50890351 CTATGGTAATTCAATGAGTGTGACTCCCAGCATAGATGTCCATAAAGGATATCCATTAGGGTCACCCATTTTAATACTGTTTGCCAGGACTCTTCAATCAAAACAAAATCCATTCTCAGAATAGCTGAGAATCAAAGGAGGACTTTTTGGT-----------TTTTGGT---TTT----------------------------------------------------------------TTT--------TGGGGGG---------GGTT--CAAGAATGATTGAGCGAGAACACTGCAGGGAGTGA-AGGAATGCTGAGCTTTGGAAGCAATTAGAACCAAGAAAACAAAAGCTGAAAGCCCTGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAATCATCTTTGTGTTTCTCCATAAAGACTGGCTTCCTCCACATGGTGAGACAGATGGTCACCAAGAACTCCCAAGCTTTAAAAAGAATGA----CTGTGGCAAGAAAACAGAGAGACACTCCTCCCCCACCTTGCTACTCCCCATGTGGCTTCTACAC---GGCAACCTGGGGCTGTGTA--GTGAGGGGA-GGGGAGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45292570 553 +  49145316 CTGTGGTAATTAAA--AGTCAGACTCCCAGCAGAGATGTCCATAAGGGACCTCCATTAGGGTCATCAGTTTTTA---TGTTTGCCAGGACTCTTCGATCAAAACAAAATCCATTCTCAGCATAGCTTAGAATCAAAGGAGGACTTTTTGGG-----------TTTTTTT---TTTGGTTCA----AGAATGATTGAGCAGGAAAGCTGCAGGGAGCAGAGGGATGCTGCAAAGGAGGACTTT---CTGGGTTTTTTT---------GGTT--CAAGAATGATTGAGCAGGAAAGCTGCAGGGAGCAG-AGGGATGCTGAGCTTTGGAAGCAATTAAACCCGAGAAAACAAAAGCTGAGAGCACCGTTACTCACTCCCGCTTCCCGGATGCTCCCTGAGTCATCTCTGTGTTTCTGCATCAAGACTGGCTTCCTTCACATGGCGAGACAGATGGCCACCAAGAACTCCCAAGCTTTAAAAAGAATGACTCTCTGTGGCAAGAAAACAGAGAGACACTCCTCCCGCACCTTGCTACTCCCCATGTGGCTCCCACAC---CTCAACTTGGGGCTGTGTAGTGTGAGGGGA-GGGGAGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19457633 516 - 122678785 CTGTAGTGATTT----AGGGTGAATACTGGAGTGGATGTCCATAAATGATATCTGTTAGGGCCGTTGATTTTAACAAGATTTGTCCAGACTCTGC--TCAACACAAAATCTTTTCTTAGACAAGCTCTGACTTAAA--AAACTTTTTTGGG-----------TGTCatttaatttaatttaatttaatttaatttaatttaa-------------------------------------tttaatttaatttTTTTTTCTCTCAGAGGTTTCCAAGAATGATTGAACAAGAAAGCTGCATGGAGAGAGGGGGATGCTGAGTTTTGGAAGCAGTCAGAAGCAAGAAAACAAAAGCTGCAGGCACTCCATCTC-------CTCCGCGGATGCT--CTGAGTCATCTTCTGGTTTCTTGTTAAAGACCTGCTTCCTCCACATGGTGAGACAGATGGCCACCAAGAGCTCCCAAGTTTTAAAGAGAATGA-TTTCCCCGACGAGGGAAC--AGAGGCACTGCTCCCCCATC-CGCTACTCC--------CTCCAGCACCTTGTCAGCCAGGGGGTGTGCA--GGGAGTGGAGGGGGTGC
i canFam3.chr1              I 38 I 2044
e macFas5.chr19              54882420 20327 +  59248254 M

a score=115955.000000
s hg38.chr19_GL949751v2_alt     10553 52 +   1002683 GAAGAAGTTtgcgttagtctgttttcacactgctgataaagacatacctgag
s panTro4.chr19              58947395 52 +  63644993 GAAGAAGTTtgcgttagtccattttcacactgctgataaagacatacctgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814502 52 +  60714840 GAAGAAGTTtgcgttagtccgttttcacgctgctgataaagacatacctgag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102578948 52 - 106955855 GAAGAAGTTtgcgttagtctgttttcacactgctgataaagacatacctgag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59871410 52 +  64156825 AAAGAGGTTtgcattagtgcgttttcacaccgctgataaagacatacctgag
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47011216 52 +  51301725 AAAGAGGTTTGCATTAGTCCGTGTTCACaccgctgataaagacatacctgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46723580 52 +  50890351 AAAGAGGTTtgcattagtccgttttcacattgctgataaagacatacctgag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45293123 52 +  49145316 AAAGAGGTTtgcattcgtccatttccacactgctgatgaaaacacagctgag
i calJac3.chr22             C 0 I 2087
e canFam3.chr1               19458149 2044 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=8022.000000
s hg38.chr19_GL949751v2_alt     10605 4 +   1002683 actg
s panTro4.chr19              58947447 4 +  63644993 actg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814554 4 +  60714840 actg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102579000 4 - 106955855 actg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59871462 4 +  64156825 actg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47011268 4 +  51301725 actg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46723632 4 +  50890351 actg
i chlSab2.chr6              C 0 I 7
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=11806.000000
s hg38.chr19_GL949751v2_alt     10609 10 +   1002683 agtaatttat
s panTro4.chr19              58947451 10 +  63644993 agtaatttat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814558 10 +  60714840 ggtaatttat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102579004 10 - 106955855 ggtaatttat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59871466 10 +  64156825 gataatttat
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47011272 10 +  51301725 gataatttat
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e chlSab2.chr6               46723636  7 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=3640.000000
s hg38.chr19_GL949751v2_alt     10619 4 +   1002683 tttt
s panTro4.chr19              58947461 4 +  63644993 tttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814568 4 +  60714840 tttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102579014 4 - 106955855 tttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59871476 4 +  64156825 tttt
i rheMac3.chr19             C 0 I 2
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e chlSab2.chr6               46723636 7 +  50890351 I
e papAnu2.chr19              47011282 0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=151125.000000
s hg38.chr19_GL949751v2_alt     10623 310 +   1002683 atttttatttttatttatttattt-ttttgagacg------cactctgtcacccaggctggagtgcagtggcacgatctccgctcactgcaagctccgcctcccggggtcacaccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccgcgcccggctaattttttgtatttttagtagagacggggtttcactgtgttatccaggatggtctcgatctcctgacctcatgatccacccgcctcggcctcccagagt----gctgggattacaggcgtgagccactgcgcccagtcagttta-c
s panTro4.chr19              58947465 317 +  63644993 gtttttatttttatttatttatttattttgagacggagtctcactctgtcacccaggctggagtgcagtggcacgatctccgctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacacccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctgggcctcccagagt----gctgggattacaggtgtgagccactgcacccagtcagttta-c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814572 315 +  60714840 atttttatttttatt--tttattt-tttcgagacggagtctcactctgtcacccaggctggagtgcagtggcacgatctccgctcactgcaagctccgcctcccgggttcaggccattctcctacctcagcctcccgagtagctgggactacaggcgcccgccaccgcgtccagctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccacctcagcctcccaaagt----gctgggattacaggcgtgagccactgcgcctggccagtttatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102579018 317 - 106955855 attttta--tttatttatttatt--ttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctccccggttcacgccattctcctgcctcagcctcccaagtagctgggactccaggtgcccacaaccacacccggctaattttttgtatttttagtagagacggggtttcatcgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcagcctcccaaagtgctggctgggattacaggtgtgagccactgcacccggccagttta-t
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e chlSab2.chr6               46723636   7 +  50890351 I
e papAnu2.chr19              47011282   0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59871480   2 +  64156825 I

a score=6633.000000
s hg38.chr19_GL949751v2_alt     10933 7 +   1002683 tttttaa
s panTro4.chr19              58947782 7 +  63644993 tttttaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814887 7 +  60714840 tttttaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102579335 7 - 106955855 tttttaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47011282 7 +  51301725 tttttta
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46723643 5 +  50890351 --tttta
i chlSab2.chr6              I 7 I 2
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59871480 2 +  64156825 I

a score=196784.000000
s hg38.chr19_GL949751v2_alt     10940 120 +   1002683 aaaagaggtataacggactt-acagttccacatggctggggaggcctcacaatcatggcagaaggtgaaaggcacat----cttacatggtggcagacgacagagaaatgagagagccaagcaaa
s panTro4.chr19              58947789 120 +  63644993 aaaagaggtgtaatggactt-acagttccacatggctggggaggcctcacaatcatggcagaaggtgaaaggcacat----cttacatggtggcagacgacagagaaatgagagagccaagcaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55814894 120 +  60714840 aaaagaggtgtaatggactt-acagttccacatggctggggaggcctcacaatcatggcggaaggtgaaaggcacat----cttacatggtggcagacgacagagaaatgagagagccaagcaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102579342 117 - 106955855 aaaagaggtataatggacttaacagttccacacgggt-gggaggcctcacaatcacggcggaaggtgaaaggcacat----cttacatggtggcagacgacagagaa---aatgatacaagcaaa
i nomLeu3.chr10             C 0 I 1816
s rheMac3.chr19              59871482 124 +  64156825 aaaaaaggtataatggactc-acagttccacatggctggggaggcctcacaatcatggtggaaggtaaaaggcacatcttacttacatggtggcagacgagagagaaacgagagagccacgcaaa
i rheMac3.chr19             I 2 C 0
s papAnu2.chr19              47011290 118 +  51301725 aaaaagagtataatggact---cagttccacatggctggggaggcctcacaatcatggcggaaggtgaaaggcacat----cttacatggtggcagacgagAGAGAAACGAGAGAGCCacgcaaa
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46723650 120 +  50890351 aaaagaggtataatggactc-ccagttccacatggctggggaggcctcacaatcatggtggaaggtgaaaggcacat----cttacatggtggcagatgagagagaaatgagagagccacgcaaa
i chlSab2.chr6              I 2 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=1212482.000000
s hg38.chr19_GL949751v2_alt     11060 1036 +   1002683 aggggaaacccgttataaaaacctcagctctcctgagacttgttcactaccatgagaacggcatgggggaatgtgtgggtggaggattagccaggtgctgaggcaagagactgaaggcacaaactgttgcagtataataaagaaaa----tagaataagaatagtcataatacaaattagatgtagagatgatcatggacaattatcaatcattattataaacattattaatcattagcttttaatattactctttgctgcattactaatataacctaggaataaccggcgggtatagggtcaggtgctgaagggacatggtgagaagtgacctagaaggcaagaggtgagccctctgtcacgcgtgcatcagggccgcttgaggggtccttggtcaagcggtaacgccagtgtctgggaaggcacccgttacttagcagacggtgaaagggagtctc-ctttccttggaggagtcagggaacactctgctccaccagcttcttgtggaaggctggatattatccaggcctgcccgcagtcatccggaggcctaaacccctccctgtggtgctgtgcttcagtgctcacactccttgtccactttcatgctcctcccgtactcctggctcctctttgaagttcatagtagatagcggtagaagaaatagtgaaagtcttaaagtctttgatctttcttataagtgcatggaagaaaacgctgacgtatgctgccttctccctctctctctgcttcggctacctaagagggaagggccccctctcctgtgatcacacgacttgcttcaccttgtcaatcacttcgaagattcaccctgcttaccctgcccccttatcttgtatgcaataagtatcagcgcgcccagccgttatgggccactaccggtctccgcgtcttgatggttgtggtcctccgggcccagctgttttctctttatctctttgtcttgtgtctttatttcttacaatctcttatctctgcacacggggagaacacctgcaaagccccata-----ggaccctgca
s panTro4.chr19              58947909 1039 +  63644993 aggggaaacccgttataaaaacctcagctcttctgagacttgttcactaccatgagaacggcatgggggaatgtgtgggtggaggattagccaggtgctgaggcaaaagactgaaggcaccaactgttgcagtataataaagaaaa----tagaataagaatagtcataatacaaattagatgtagagatgatcatggacaattatcaatcattattataaacattattaatcattagcttttaatattattctttgttgcattactaatataacctaggaataaccggcgggtatagggtcaggtgctgaagggacatggtgagaagtgacctagaaggcaagaggtgagccctctgtcacgcccgcataagggccgcttgaggggtccttggtcaagcggtaacgccagtgtctgggaaggcacccgttacttagcagaccgcgaaagggagtctc-ctttccttggaggagtcagggaacactctgctccaccagcttcttgtggaaggctggatattatccaggcctgcc--cagtcatctggaggcctaaacccctccctgtggtgctgtgcttcagtgctcacgctccttgtccactttcatgctcctcccgtactcctggctcctctttgaagttcatagtagatagcggtagaaggaatagtgaaagtcttaaagtctttgatctttcttagaagtgcatggaagaaaacgctgacgtatgctgccttctccctctctctctgcttcggctacctaagaggaaagggtcccctctcctgtgatcacacgacttgcttcaccttgtcaatcacttcgaagattcaccctgcttaccctgcccccttatcttgtatgcaataagtatcagcgcgcccagccgttatgggccactaccggtctccgagtcttgatggttgtggtccccccggcccagctgttttctctttatctctttgtcttgtgtctttatttcctacaatctcttatctctgcacacggggagaacacctgcaaagccccatagggctggaccctgca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55815014 1042 +  60714840 aggggaaacctgttataaaaacatcagctctcttgagacttgttcactaccatgagaacagcatgggggaatgtgtgggcgaaggattacctaggtgcccagccaagagactgaaggcacaaactgttgcggtataataaagaaaatagttagaataagaata-tcatgatacaaattagatatagagatgatcatggac-attatcaatcattattataaacattattaatcattagcttttaatattactcttcgttgcattactaatataacctaggaataaccggcaggtat-gggtcaggtgctgaagggacatggtgagaagtgacctagaaggcaagcggtgacctctctgtcacgcccgcataagggccacttgaaggctccttgctcaagcggtgacgccagtgtccgggaaggcacccgttacttagcagaccgcgaaagggagtctc-atttccttggaggagtcagggaacactctgctccaccagcttcttgtgggaggctggatgttatccaggcctgcccgcagtcatccggaggcctaaacccctccctgtggtgctgtgcttcaatgctcacgctccttgtccactttcatgctcctcccttactcctgcctcctctttgaagtttgtagtagatagcggtagcggaaatagtgaaagtcttaaaggctttgatctttcttataagtgcatagaagaaaacactgacatatgctgccttctctctctctctctgcttcccctacctaagagggaagggccccctgtcctgtgatcacgtgacttgcttcaccttatcgatcacttagaagattcaccctccttagcctgcccccttgtcttgtatgcaataaatatcagcgcgcccagccgtttggggccactaccggtctccgcgtcttgatggttgtggtcagctgggcccagctgttttctctttatctctttgtcttgtgtctttatttcttacaatctcttatctctgcacacggggagaacacctgcaaagccccgcagggctggaccctgca
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59871606  979 +  64156825 aggggaaacccctt----agatgtcagctctcgtgagacttgttcactaccgcgagaatagcatgggggaatctgtgggtggagggtggcccaggtgcccaggcaagagactgaaggcacaaactgtttcagtataataaagaaaatagttagaataagaatagtcataatacaaattagatatagaggtgatcgtggac-attatcaatcattattataaacattattaa--------------------------------------------------------ggcaggtatagggtcaggtgctgaagggacattgtgagaagtgacctagaaggcaagaggtgagccctctgtcacacctgcataagggccatttgaggtctccttggtgaagcagtaacgccagtgactgggaaggcacccgttacttagcagaccatgaaagggagtctctctttccttggaggagtcagagaacactctgctccaccagcttcttgtgggaggctggatattatccaggcctgcccgtagtcatccggaggcctaaacccctccgtgtggtgctgtgcttcagtggtcacgctccttgtccgctttcatgttcctcccgtactcctggttcctctttgaagttcgtagtagatagcggtagaagaaatagtgagagtcttaaagtctttgatctttcttataagtgcatagaagaaaatattgacgtatgctgcct------actgtctctgcttcggctacctgtaagggaagggccccctgtcccatgatcacgtgatttgcttcaccttatcaatcacctggacaactcaccctccttaccctgcccccttgtcttgtatgcaataaatatcagcacgtccagccgttcggggccactaccagtctccgcgtcttggtggtagtggtccccacggcccaggtgctttctctttatctctttgtcttgtgtctttatttcttacaatctctggtctccgcacatggggagaacgcctgcaaagccccgtagggctggaccctaca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47011408 1031 +  51301725 aggggaaaccccttagaGAGATGTCAGCTCtggtgagacttgttcactaccgcgagaatagcatgggggaatcTGGGGGCGGAGGGTGGCCCAGGTGCCcaggcaagagactgaaggcacaaactgtttcagtataataaagaaaatagttagaataagagtagtcataatacaaattagatatagaggTGATCGTGGAC-ATTATCAATCATTATTATAagcattattaatcattagcttttaatattactctttgttgCGTTACTAATATAACCTAGGAATAACGGGTGGGTATagggtcaggtgctgaagggacattgtgagaagtgacctagaaggcaagaggtgagcccTCTGTCACACCTGCATAAGGGCCATTTGAGGGCTCCTTGGTGAAGTGGTAGCGCCAGTGTCTGGGAAGGCACCTGTTACTTAGCAGACCCCGAAagggagtctc-ctttccttggaggagtcagggaacgctctgctccaccagcttcttgtggaAGGCTGGATATTATTCAGGCCTGCCTGCAGTCATCCGGAGGCCTAAACCCCTCCGTgtggtgctgtgcttcagtggtcatgctccttgtccactttcatgCTCCTCCCgtactcctggttcctctttgaagttcgTAGTAGACAGCGGTAGA------AGTGAGagtcttaaagtctttgatctttcttataagtgcatagaagaaaatattgacgTATGCTGCCT------GCTCTCTCTGCTTCGGCTACCTGtaagggaagggccccctgtcccATGATCACGTGATTTGCTTCACCTTATCAATCACCTGGACAACtcaccctccttaccctgcccccttgtctTGTATGCGATAAACATCAGCACGTCCAGCCATTCGGGGCCACTACCAGTCTCCGcatcttggtggtagtggtccccacGGCCCAGcgtctctctctttatctctttgt-ttgtgtctttatttcttacaatCTCTGGTCTCCGCACATGGGGAGAACACCTGCAAAGCCCtgtagggctggaccctaca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46723770 1037 +  50890351 aggggaaaccccttagagagacgtcagctcttgtgagacttgttcactaccgcgagaatagcatgggggaatctgtgggcggaggatggcccaggtgccgaggcaagagactgaaggcacaaactgtttcagtataataaagaaaatagttggaataagagtagtcgtaatacaaattagatatagaggtgattgtggac-attatcaatcattattataaacattattgatcattagcttttaatattactctttgttgcattgctaatataacctaggaataacgggtgggtatagggtcaggtgctgaagggacattgtgagaagtgacctagaaggcaagaggtgagccttctgtcacacccgcataagggctgcttgagggctccttggtgaagcggtagcgccagtgtctgggaaggcacctgttacttagcagaccgcgaaagggagtctc-ctttccttggaggagtcagggaatgctctgctccaccagcttcttgtggaaggctggatattatccaggcctgtccacaatcatccggaggcctaaa-ccctccctgtggtgctgtgcttcagtagtcacgctctttgtccactttcatgctcctcccatacccctggttcctctttgaagttcgtagtagatagcggtagaagaaatagtgagagtcttaaagtctttgacctttcttacaagtgcatagaagaaaatattgacgtatgctgcct------gctgtctctgcttcggctacctgtaagggaagggccccctgtcccatgatcacgtgatttgcttcaccttattaatcacctggacatgtcaccctccttaccccgcccccttgtcttgtatgcgataaatatcagcgcgtccagccgttcggggccactaccagtctccgcgtcttggtggtagtggtccccacggcccagctgctttctctttatctctttgtcttgtatctttatttcttacaatctctggtctccgcacatgaggagaacacctgcaaagccccttagggctgggccctaca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45293175 2087 +  49145316 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=1257558.000000
s hg38.chr19_GL949751v2_alt     12096 753 +   1002683 ggaatccacccccatgattgaattatctcccactgggtccatcccacaacacatgggaattatgggagctacaactgaagatgagatttgggtggggacacagacacaagccatatATCAAGGTTGTTCCTTCAGATGCAGCAATCCTGGGAGCTTCTGGTTAGGACAAGATACAAGC-AGAGACAGCTTCATGGGtattgtaaactcaatgtttgtgtcccgacaaaattcagctgttggaacctaacccca--aggtgatggtattTGtaatacgggagctaaaaagaaattattgaggcagacagtgagggtaagagagtcctcagtaaggtttcctattaataaagagcagcccccaaataatttcttttctaacagaaagcagcctgaaacatcaagctgcaagcatagataaacaagctaaaatcttgcat-------------cagctgtgccaatagaaaacggatgcctgggagccgggtatattcaacatggaggttccctcttcccttttctttgtccccacatgtgcagtaaaaaagcagacaacatggccccggccaggcagagaccctacctacgtaataaaagattagggtgggatggccagcttctttgggggctatgcaaacgtcatacctggtccgactaatctctcaggccctatgtaaatcagacagcacctcctcaagcttgtctataaaagccccatgcatttcaccacaaaaccaggggtcccactcgggaacccctctcttctct--
s panTro4.chr19              58948948 734 +  63644993 ggaatccacccccgtgattgaattatctcccactgggtccatcccacaacacatgggaattatgggagctacaattgaagatgagatttgggtggggacacagacacaagccatatATCAAGGTTGTTCCTTCAGATGCAGCAATCCTGGGAGCTTCTGGTTAGGACAAGATACAAGC-GGAGACGGCTTCATGGGtattgtaaactcaatgtttgtgtcccgacaaaattcagctgttggaacctaacccca--aggtgatggtattTGtaatacgggagctaaaaagaaattatttaggcagacagtgagggtaagagagtcctcagtaaggtttcctgttaataaagagcagcccccaaataatttcttttctaacagaaagcagcctgaaacatcaagctgcaagcatagataaacaagctaaaatcttgcat-------------cagctgtgccaatagaaaacggatgcctgggagccgggtatattcaacatggaggttccctcttcccttttctttgtccccacatgtgcagtaaaaaagcagacaacatggccccggccaggcagagaccctacctacataataaaagattagggtgggatggccagcttctttgtgggctatgcaaacgtcatacctggtccgactaatctctcaggccctgtgtaaatcagacaccacctcctcaagcttgtctacaaaagccccatgcatttcaccacaaaaccagggg-------------------tcttctct--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55816056 765 +  60714840 ggaatccacccccatgattgaattatctcccactgggtccatcccacaacacatgggaattatgggagctacaattgaagatgagatttgggtggggacacagacacaagccatatATCAAGTTTGTTCCTTCAGATGCAGCATTCCTGGGAGCTTCTGGTTAGGACAAGATACAAGC-AGAGACAGCTTCATGGGtattgtaaattcaatgtttgtgtcccgacaaaattcagctgttggaacctaacccca--aggtgatggtattTGtaacacaggagctaaaaagaaattatttaggcagacagtgagggtaagagtgtcctcggtaagttctcctattaataaagagcagcccccaaataatttcttttctaacagaaagcagcctgaaacatcaagctgcaagcatagataaacaagctaaaagcttgcataggtaaatgccggcagctgtgccaatagaaaacggatgcctggaagccgggtatattcaacatggaggttccctcttcccttttctttgtccccatatgtgcagtagaaaagcaggcaacatggccccggccaggcagagaccctacctacataataaaagattagggtgggatggccagcttctttgtgggctatgcaaacatcacacctggtccgactaatctctcaggccctatgtaaatcagacaccacctcctcaagcttgtctataaaagccccatgcatttcaccacgaaatcaggggtcccactcgggcactcctctc-tctct--
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59872585 762 +  64156825 ggaatccgcccccatgattgaattatctcccactgggtccatcccacaaaacatgggaattatgggagctaccattaaagatgagatttgggtggggacgcagacacaagcc--ttatcaAAGTTGTTCCTTCAGATGCAATATTCCTGGGAGCTTCTGGTTAGGACAAGATACAAGC-GGAGACAGCTTCATGGGtattgtaaattcaatgtttgtgtcccgacaaaattcagctgttggaacttaacccca--aggtgatggtattTGtaatacgggagctaaaaagaaatgctttaggcagacagtgagggtaagagagtcctccgtatggtttcctgtgaataaagagcagtccccaaatcatttcttttctaacagaaagcagcccgaaacatcaaggtgcaggcctagacaagcaagctaaaagcttgcataggtaaatgctggcagctgtgccaatagaaaagggatggctggaggccgggtatattcaacatggaggttccctcttcccttttgtttgtccccacatgtgcagtaaaaaaacaggcaacgtggccccagccgagcagagaccccacctatgtaataaaacattagggtgggatagccagcttcttcgtgggttatgcaaacgtcacacctggtccggctaatctctcaggccctatgtaaatccgacaccacctgctcaagtttgcctattaaa-ccccatgcatttcaccatgaaaccaggcatcccactcgggagcccctctc-tatct--
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47012439 762 +  51301725 ggaatccgcccccatgattgaattatctcccactgggtccatcccacaacacatgggaattatgggagctaccattgaagatgagatttgggtggggacgcagacACAAGCC--TTATCAAAGTTGTTCCTTCAGATGCAATATTCCTGGGAGCTTCTGGTTAGGACAAGATACAAGC-GGAGACAGCTTCATGGGTATTGTAAATTCAATGTTTGTGTCCCGACAAAATTCAGCTGTTGGAACTtaacccca--aggtgatggtatttgtAATACGGGAGCTAAAAAGAAATGCTTTAGGCAGACAGTGAGGGTAAGAGAGTCCTCCGTAAGGTTTCCTGTGAATAAAGAGCAgtccccaaatcatttcttttctaacagaaagCAGCCCGAAACATCAAGGTGCAGGCCTAGACAAGCAAGCTAAAAGCTTGCATAGGTaaatgctggcagctgtgccaatagaaaagggatGGCTGGAGGCCGGGTATATTCAACATGGAGGTTCCCTCTTCCCTTTTGTTTGTCCCCACATGTGCAGTaaaaaaaCAGGCACCGTGGCCCCAGCCAGGCAGAGACCCCACCTACGTAATAAAACATTAGGGTGGGATAGCCAGCTTCTTCGTGGGTTATGCAAACGTCACACCTGGTCCGGCTAATCTCTcaggccctatgtaaatcagacaccacctgcTCAAGCTTGCCTATTAAA-CCCCATGCATTTCACCACGAAACCAGGCATCCCACTCGGGAGCCCCTCTC-TATCT--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46724807 761 +  50890351 ggaatccgcccccatgattgaattatctcccactgggtccatcccacaacacatgggaattataggagctaccattgaagatgagatgtgggtggggacgcggacacaggcc--ttatcaAAGTTGTTCCTTCAGATGCAATATTCCTGGGAGCTTCTGGTTAGGACAAGATACAAGC-GGAGACAGTTTCATGGGtattgtaaattcaatgtttgtgtcccgacaaaattcagctgttggaacttaacccca--aggtgatggtattTGtaatacgggagctaaaaagaaatgatttaggcagacagtgagggtaagagagccctcc-taaggtctcctgtgaataaagagccgtccccaaatcatttcttttctaacagaaagcagcccgaaacatcaaggtgcaggcctagacaagcaagctaaaagcttgcataggtaaatgctggcatctgtgccaatagaaaagggatgcctggaggccgggtatattcaacatggaggttccctcttcccttttgtttgtccccacatgtgcagtaaaaaagcaggcaatgtagtcccagccaggcagagaccccacctatgtaataaaagattagggtgggatagccagcttcttcgtgggctgtgcaaacgtcacacctggtccgattaatctctcaggccctatgtaaatcagacaccacctgctcaagcttgtctatcaaa-ccccatgcatttcaccacgaaaccaggggtcccactcgggagcccctctc-tatct--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45295262 765 +  49145316 ggaatctgcccccacgattgaattatctcccactgggtccatcccacaacacatgggaattatgggagctacaactgaagatgagatttgggtggggacacagacacaagcc--atatcaAGGTTGTTCCTTCTGTTGCAGCATTCCTGGGAGCCTCTGGTTAGGACAAGAGTCAAGCGGGGGACAGCTTCATGGGtattgtaaactcagtgtttgtgtcccgacaaaactcagatgctggaacctaaccccaacagctcacggtattagtaatacaggagctaaaacgaaattatttaggcagacagtgagggtaagacagtcctcagtaaggttttccattcctaaagagcagcccccaaatcgtttcttctctaaaagaaagcagcctgaaaaatcaaggtgcaagcatagataagcaagctaacagcttgcataggtaaatgccagcagctgtgcccgtagaaaagggataccctggagcagggtttattctacatggaggctcactctccctttttctttgtccccacatgtgcagtaaaagagcaggaaacatggccctggcgaggtagagaccccacctgc---atgaaagattggggtgggatggcctgcttcttcatgggctatgcagacgtcacagctggtccaaccaatctctcaggccctatgtaaatgagacactgcctcctcaagctcatctataaaactcctgtgcatttcaccacaagatcggaagtcccactcgggagcctctctc-tctctCT
i calJac3.chr22             I 2087 I 2053
e canFam3.chr1               19458149 2044 - 122678785 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=36035.000000
s hg38.chr19_GL949751v2_alt     12849 33 +   1002683 gtgcaaaagagaga--actattctcttttctcttt
s panTro4.chr19              58949682 33 +  63644993 gtgcaaaagagaga--actattctcttttctcttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55816821 33 +  60714840 gtgcaagagagaga--actattctcttttctcttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59873347 35 +  64156825 gtacgagagagagagtgctattctcttttctcttt
i rheMac3.chr19             C 0 I 66
s papAnu2.chr19              47013201 33 +  51301725 GTACGAGAGAGAGa--gctattctcttttctcttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46725568 31 +  50890351 gtacgagtgaga----gctattctcttttctcttt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45296027 2053 +  49145316 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=19704.000000
s hg38.chr19_GL949751v2_alt     12882 29 +   1002683 cttttgcttattaagccttcactc-----ttttt
s panTro4.chr19              58949715 31 +  63644993 cttttgcttattaagccttcactc---ttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55816854 34 +  60714840 cttttgcttattaagccttcactccCtttttttt
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47013234 27 +  51301725 cttttgtttattaagccttcactt-----ttt--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46725599 29 +  50890351 cttttgtttattaagccttcactt-----ttttt
i chlSab2.chr6              C 0 I 76
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45296027 2053 +  49145316 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59873382 66 +  64156825 I

a score=19758.000000
s hg38.chr19_GL949751v2_alt     12911 47 +   1002683 tttttttttttttttgagatggagtctggctctgtcattcaggctgg
s panTro4.chr19              58949746 47 +  63644993 tttttttttttttttgagatggagtctggctctgtcattcaggctgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55816888 47 +  60714840 ttttgttttttttttgagatggagtctggctctgtcattcaggctgg
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47013261 43 +  51301725 ttaaattttatttttgagcaggagt----ctctgtcattcaggctgg
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45296027 2053 +  49145316 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e chlSab2.chr6               46725628 76 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59873382 66 +  64156825 I

a score=5251.000000
s hg38.chr19_GL949751v2_alt     12958 20 +   1002683 agtgcagtggcacgatttcg
s panTro4.chr19              58949793 20 +  63644993 agtgcagtggcacgatttcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55816935 20 +  60714840 ggtgcagtggcacaatttcg
i ponAbe2.chr19             C 0 I 40
e canFam3.chr1               19458149 2044 - 122678785 I
e calJac3.chr22              45296027 2053 +  49145316 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e chlSab2.chr6               46725628 76 +  50890351 I
e papAnu2.chr19              47013304  0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59873382 66 +  64156825 I

a score=4133.000000
s hg38.chr19_GL949751v2_alt     12978 45 +   1002683 gctcacttcaacctccgcctcccaggtgcaagcaattctcctgcc
s panTro4.chr19              58949813 45 +  63644993 gctcactgcaacctccgcctcccaggtgcaagcaattctcctgcc
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e ponAbe2.chr19              55816955 40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e nomLeu3.chr10             102579459 1816 - 106955855 I
e chlSab2.chr6               46725628 76 +  50890351 I
e papAnu2.chr19              47013304  0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59873382 66 +  64156825 I

a score=26871.000000
s hg38.chr19_GL949751v2_alt     13023 105 +   1002683 tcagcctcccaagtagctgggatgacaggcacccaccactgcgcccagctaatttttatatttttagtagagatggggttt-caccgtgttggtcaggctggtttc
s panTro4.chr19              58949858 105 +  63644993 tcagcctcccaagtagctgagatgacaggcacccaccactgcgcccagctaatttttatatttttagtagagatggggttt-caccgtgttggtcaggctggtctc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102581275 106 - 106955855 tcagcctcccaagtagctgggattacaggcacccaccactgttcccagctaatttttgtatttttagtagagacggggtttccaccatgttggtcaggctggtctc
i nomLeu3.chr10             I 1816 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e ponAbe2.chr19              55816955  40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e chlSab2.chr6               46725628  76 +  50890351 I
e papAnu2.chr19              47013304   0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59873382  66 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt     13128 1 +   1002683 g
s panTro4.chr19              58949963 1 +  63644993 g
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102581381 1 - 106955855 g
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59873448 1 +  64156825 g
i rheMac3.chr19             I 66 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e ponAbe2.chr19              55816955 40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e chlSab2.chr6               46725628 76 +  50890351 I
e papAnu2.chr19              47013304 0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=22129.000000
s hg38.chr19_GL949751v2_alt     13129 36 +   1002683 aactcctgatctcaggtgatccgc-cccccactcggt
s panTro4.chr19              58949964 36 +  63644993 aactcctgatctcaggtgatccgc-cccctactcggt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102581382 37 - 106955855 aacttctgatctcaggtgatccgtgcccctactcggt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59873449 35 +  64156825 aactcctgacctcagttgatcct--ccccgcctcgac
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47013304 35 +  51301725 aactcctgacctcagttgatcct--ccccgcctcgac
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e ponAbe2.chr19              55816955 40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e chlSab2.chr6               46725628 76 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=369809.000000
s hg38.chr19_GL949751v2_alt     13165 296 +   1002683 ctcccaaagtcctgagattacaggcgtgagccactgcgcccggccCAgtctctttcactatgtaaggacacagcaagaaggtgccagctatgaaccaggaaaaaagccctcagcagacactgaatctaccagtgctttggtcttggacttccagcctccagaaccatgagaaataactatgtgttgtctgtaagctgccaggtctttggtatgttgatagcagcctggatggactaagacaCTCTCTCCTTCCCTCTCATGCCCTGGACCCTCATCAGGGCCAGAAGTGGTTGGGG
s panTro4.chr19              58950000 296 +  63644993 ctcccaaagtcctgagattacaggcgtgagccactgcacccggccCAGTCTAtttcactatgtaaggacacagcaagaaggtgccagctatgaaccaggaaaaaagccctcagcagacactgaatctaccagtgctttggtcttggacttccagcctccagaaccgtgagaaataactatgtattgtctgtaagctgccaggtctttggtatgttgatagcagcctggatggactaagacaCTCTCTCCTTCCCTCTCATGCCCTGGACCCTCATCAGGGCCAGAAGTGGTTGGGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102581419 290 - 106955855 ctcccaaagtcctgagattacaggcgtgagccactgcgcccggccCAgtctctttcactatgtgaggacacagcaggaaggtgccagctatgaaccaggaaaaaagccctcagcagacactgaacctaccagtgctttggtcttggccttccagcctccagaacggtgagaaataactatgtgttgtctgtaagctgccaggtctttggtatgttgatagcagcctggatggactaagacaCTCTCTCCTTCC------TGCCCTGGACCCTCATCAGGGCCAGAAGTGGTTGGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59873484 292 +  64156825 ctcccaaattgctgagattacaggcgtgagccactgcgccctgccCAgtctctttcactacgtgaggatacagcaagaaggtgccagctatgaaccagg-aaaaagccctcagcag--actgaatctaccagtgcttgggtcttggacttgaagccttcagaacggtgagaaataactatgtgttgtctggaagctgcctggtctttggtagattgatagcagcctggatggactgagacGCTCCTTCCTCCC-TCTCATGCCCTGGACCCTCATCAGGGCCAGAAGTGGTTGGGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47013339 292 +  51301725 ctcccaaattgctgagattacaggcgtgagccactgcgccctgcccagTCTCTTTCActacgtgaggacacagcaagaaggtgccagcTATGAACCAGG-AAAAAGCCCTCAGCAG--ACTGAATCTACCAGCGCTTTGGTCTTGGACTTGAAGGCTTCAGAACGGTGAGAAATAACTATGTGTTGTCTGGAAGCTGCCTGGTCTTTGGTACGTTGATAGCAGCCTGGATGGACTAAGacgctccctcctccc-tctcatgCCCTGGACCCTCATCAGGGCCAGAAGTGGTTGGGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46725704 292 +  50890351 ctcccaaattgctgagattacaggcgtgagccactgcgccctgccCAgtctctttcactacgtgaggacacagcaagaaggtgccagctatgaaccagg-aaaaagccctcagcag--actgaatctaccagcgctttggtcttggacttgaagccttcagaacggtgagaaataactatgtgttgtctggaagctgcctggtctttggtacgttgatagcagcctggatggactaagacGCTCCCTCCTCCC-TCTCATGCCCTGGACCCTCATCAGGGCCAGAAGTGGTTGGGG
i chlSab2.chr6              I 76 C 0
e canFam3.chr1               19458149 2044 - 122678785 I
e ponAbe2.chr19              55816955  40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=136227.000000
s hg38.chr19_GL949751v2_alt     13461 91 +   1002683 TGATGGCCCAAGCAGACTTTAAAAAGCACTGGCCTAGCACAAGGGTTGGCACGCTAGA-GCCCACAGCTTGTTTTTGCAAATAAAATTTTTT
s panTro4.chr19              58950296 91 +  63644993 TGATGGCCCAAGCAGACTTTAAAAAGCACTGGCCTAGCACAAGGGTTGGCACACTGCA-GCCCACAGCTTGTTTTTGCAAATAAAATTTTTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102581709 91 - 106955855 TGATGGCCCAAGCAGACTTTAAAAAGCACTGGCCTAGCACAAAGGTTGGCACACTATA-GCCTACAGCTTGTTTTTGCAAATAAAATTTTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59873776 91 +  64156825 TGATGGCCCAAGCAGACTTTTAAAAGCACTGACCTCGCACAAGGGTTGGAACACTACA-GCCCACAGCTTGTTTTTGAAAACAAAATGTTTT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47013631 91 +  51301725 TGATGGCCCAAGCAGACTTTTAAAAGCACTGGCCTCGCACAAGGGTTGGAACACTACA-GCCCACAGcttgtttttgaaaacaaaatgtttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46725996 91 +  50890351 TGATGGCCCAAGCAGACTTTTAAAAGCACTGGCCTCGCACAAGGGTTGGAACACTACA-GCCCACAGCTTGTTTTTGAAAACAAAATGTTTT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19460193 88 - 122678785 TGGTGATTCATTCAGATTTCAAAAAGCATTGGTCTAGGACAGGTGTTGGCA----ACAggcccatcacttgtgtttgtaaataaagtttttt
i canFam3.chr1              I 2044 I 3674
e ponAbe2.chr19              55816955 40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=264025.000000
s hg38.chr19_GL949751v2_alt     13552 218 +   1002683 GTTTTTAAAACAACTTTCTGggctgggcacggtggctcacgcctgtaatcccagcactatgggaagccgaggcaggcggatgacttgaggtcaggagctcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatac-aaaaaaattagcctggtgtgatggcagaagcttgtaatcccagctactcaggaggctgagacaggagaat
s panTro4.chr19              58950387 218 +  63644993 GTTTTTAAAACAACTTTCTGggctgggcacggtggctcacgcctgtaatcccagcactatgggaagccgaggcaggcggatgacttgaggtcaggagctcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatac-aaaaaaattagcctggtgtgatggcagaagcttgtaatcccagctactcaggaggctgagacaggagaat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102581800 218 - 106955855 GTTTTTAAAACAACTTTCTGggctgggcacggtggctcacgcctgtaatcccagcgcttggggaggccgaggcaggcggatcacctgaggtcaagcattcaagaccaacctggccaacatggtgaaaccccatctctactaaaaatac-aaaaaaattggccgggtgtgatgagaaacccctgtaatcccaactactcgggaccctcatacaggagaat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59873867 218 +  64156825 GTTTTTAAAACAACTTTCTGggctgggcgcagtggctcacgcctgtaatcccagctctttgggaggctgaggtgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatac-aaaaaaattagctgggcgtggtggcagacgcctgtaatcccagctactcggaaggctgagacaggagaat
i rheMac3.chr19             C 0 I 14
s papAnu2.chr19              47013722 219 +  51301725 gtttttaaaacaactttctgggctgggcgcagtggctcacacctgtaatcccagctctttgggaggctgaggtgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaaattagctgggcgtggtggcaggcgcctgtaatcccagctactcggaaggctgagacaggagaat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46726087 218 +  50890351 GTTTTTAAAATAACTTTCTGggctgggcacagtggctcccgcctgtaattccagctctttgggaggctgaggtgggtggatcacttgcagtcaggagcttgagaccagcctggccaacatggtgaaaccccatcactactaaaaatac-gaaaaaattagctgggcgtggtggcagacgcctgtaatcccagctactcggaaggctgagacaggagaat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e ponAbe2.chr19              55816955  40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=62407.000000
s hg38.chr19_GL949751v2_alt     13770 85 +   1002683 catttgaacctgcggggagaggttgcagcgagctgagatcacgccactgcactctggcgcctgggcgacagagcaagactccatc
s panTro4.chr19              58950605 85 +  63644993 catttgaacctgcagggagaagttgcagcgagctgagatcacgccactgcactctggagcctgggcgacagagcaagactccatc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102582018 85 - 106955855 catttgatcctttttggtgtggtgactgcgagctgacatcgcaacactgcattccggtgccggggtgacagagcatgactccttc
i nomLeu3.chr10             C 0 I 3
s papAnu2.chr19              47013941 85 +  51301725 cacttgaacctgccgggggaggttgcagcgagctgagatcacgccactgcactctggcgcctgggcgacagagcaagactccata
i papAnu2.chr19             C 0 I 14
s chlSab2.chr6               46726305 85 +  50890351 catttgaacctgccgggggaggttgcagcgagctgagatcacgccaccgcactctggcgcctgggcgacagagcaagactccatc
i chlSab2.chr6              C 0 I 12
e canFam3.chr1               19460281 3674 - 122678785 I
e ponAbe2.chr19              55816955 40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59874085 14 +  64156825 I

a score=48488.000000
s hg38.chr19_GL949751v2_alt     13855 43 +   1002683 aaaaaaaaaaaaaCtttctatagatacataata-tttatgcata
s panTro4.chr19              58950690 40 +  63644993 ---aaaaaaaaaCCtttctatagatacataata-tttatgcata
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102582106 44 - 106955855 aaaaaaataaaTCCTTTGTatggatacaaaatattttatgcata
i nomLeu3.chr10             I 3 C 0
s rheMac3.chr19              59874099 43 +  64156825 aaaaaaaaaaaatctttctatagatacataata-tttatgcata
i rheMac3.chr19             I 14 C 0
s papAnu2.chr19              47014040 43 +  51301725 aaaaaaaaaaaaactttctatagatacataata-tttatgcata
i papAnu2.chr19             I 14 C 0
s chlSab2.chr6               46726402 43 +  50890351 aaaaaaaaaaaaaCtttctatagatacataata-tttatgcata
i chlSab2.chr6              I 12 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e ponAbe2.chr19              55816955 40 +  60714840 I
e calJac3.chr22              45296027 2053 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=155676.000000
s hg38.chr19_GL949751v2_alt     13898 100 +   1002683 tttatgacatacatgtgatagtttg------------------------------------------atacatgcacagaatgtataatactcaaattagggtatttaggatattc-accacctcaaacatttatcttt-tttt
s panTro4.chr19              58950730 100 +  63644993 tttatgacatacatgtgatagtttg------------------------------------------atacatgcacagaatgtataatactcaaattagggtatttaggatattc-accacctcaaacatttatcttt-tttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55816995 100 +  60714840 TTTATGACAtacatgtgatagtttg------------------------------------------atacatgcacagaatttataatactcaaatcagggtatttaggatattc-accacctcaaacatttatcttt-tttt
i ponAbe2.chr19             I 40 C 0
s nomLeu3.chr10             102582150  96 - 106955855 tttatgacatacatgtgatag-ttg------------------------------------------atacatgcacagaatgtataatactcaaatcagggtatttaggatattc-acca-ctcaaacatttatcttt-tt--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59874142 144 +  64156825 tttatgacatacatgtgacagtttgatacatgtgacagtttgatacagtttgatacatgacagttttatacatgcacagaatgtataatactcaaatcaggatatttaggatattctgctacctcaaacatttatctttctttt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47014083 102 +  51301725 tttatgACATACATGTGACAGTTTG------------------------------------------ATACATGCACAGAATGTATAATactcaaatcagggtatttaggatattctgctacctcaaacatttatctttctttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46726445  99 +  50890351 tttatgacatacatgtaacagtttg------------------------------------------atacatgcacagaatgtataatactcaaatcagggtatttaggatattctgctacctcaaacatttatct---tttt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e calJac3.chr22              45296027 2053 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=92922.000000
s hg38.chr19_GL949751v2_alt     13998 55 +   1002683 ttatcttttcgagacagagtctctctct-gtcgcccaggctggagtacagtggtgt
s panTro4.chr19              58950830 55 +  63644993 ttttcgtttcgagacagagtctctctct-gtcgcccaggctggagtacagtggtgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55817095 54 +  60714840 tttt-ttttcgaaacaaagtctctctct-gtcgcccaggctggagtacaggggtgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102582246 50 - 106955855 -----ctttcgagacagagtctctctct-gtcacccaggctggagtacagtggtgt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59874286 51 +  64156825 ttttcctttcgagacagag----tctct-gttgcccaggttggaatgcagtggtgt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47014185 51 +  51301725 ttttcctttcgagacagag----tctct-gttgcccaggttggagtgcagtggtgt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46726544 51 +  50890351 ttttccttttgagacagag----tctct-gttgcacaggttggagtgcagtggtgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45298080 56 +  49145316 ttgttgttctgagatggagtttcgctctcgtttcccaggctggagtgcagtggcac
i calJac3.chr22             I 2053 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=702425.000000
s hg38.chr19_GL949751v2_alt     14053 415 +   1002683 gatcttggctcactgcaacctctgcctcccgagttcaagcaattcttctgcctcagcctcccaagtggctgggattacaggtgtgcgccaccacacccagctaatttttgtatttttagtggagatggggtttcaccttgttggccaggctggtcttgaactcctgacctcaggtgatccacccatcttggcctctcaaagtgttgggattacaggagtgagccactgcacctggctcatttatcgtttgtgttgggaatgtttcaaatcttctcttctagctattttgaaatatacaatatattgctgttaactatagtcacccttctgtgctattgaacacttgaacttattccttctatccaactgtgtttgtgcccattaactatcccaccccttctagcctttgataact
s panTro4.chr19              58950885 415 +  63644993 gatcttggctcactgcaacctctgcctcccgagttcaagcaattcttctgcctcagcctcccaagtggctgggattacaggtgtgcaccaccacacccagctaatttttgtatttttagtggagatggggtttcaccatgttggccaggctgctcttgaactcctgacctcaggtgatccacccatcttggcctcccaaagtgttgggattacaggagtgagccactgcacctggctcatttatcgtttgtgttgggaatgtttcaaatcttctcttctagctattttgaaatatacaatatattgctgttaactatagtcacccttctgtgctattgaacacttgaacttattccttctatccaactgtgtttgtgcccattaactatcccaccccttctagcctttgataact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55817149 410 +  60714840 gatcttggctcactgcaacctccgcctcccaggttcaagcgattcttctgcctcagcctcccaagtggctgggattacaggcatgcacaaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccatcttggcctcccaaagtgtt-ggattacaggagtgagccactgcacctggcccatttatcgtttgtgtttggaacgtttcaaatcttctcttctagctattttgaaatatacaatatattgttgttaactatagttacccttctgtgctattgaacacttgaacttattccttttat----ctgtgtttgtgcccactaactatcccaccccttctagcctttgataact
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102582296 415 - 106955855 gatcttggctcactgtaacctccgcttcccgggttcaagcaattcttctgccccagcctcccaagtggctgggattacaggcgtgcaccaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgttggccgggctggtcttgaacgcctgacctcaggtgatccacccatcttggcctcccaaagtgttgggattacaggagtgagccactgcacctggctcgttgatcatttgtgttgggaatgtttcaaatcttctcttctagctgttttgaaatatacaatatattgttattaactatagtcacccttctgtgctattgaacatttgaacttattccttctatctaactgtgtttgtgcccattaactatcccaccccttctagcctttgataact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59874337 415 +  64156825 gattttggctcactgcaacctctacctcctgggttcaagtgattcttctgcctcagtctcccaagtagctgggattacaggcatgcaccaccacacccaattaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttaaactcctgacctcaggtgatccacctgtcttggcctcccaaagtgttgggattacaggagtgagccactgcacctggctcatttatcatttgtgttgggaaagtttcaaatcttctcttctagctattttgaaatatacaatgtactgttgttaactatagtcacccttctgtgctgttgaacacttgaacttgttccttctgtttaactgtgtttgtgcccgttaactaaccCACCCCTTCTAGCCTGTGATAACT
i rheMac3.chr19             C 0 I 334
s chlSab2.chr6               46726595 415 +  50890351 gattttggctcactgcaacctccacctcctgggttcaagtgattcttctgcctcagtctcccaagtagctgggattacaggcatgcgccaccacacccaattaatttttgtatttttagtagagacggggtttcaccatgttggccaggttggtcttaaactcctgacctcaggtgatccacccgtcttggcctcccaaagtgttgagattacaggagtgagccactgcacccggctcatttatcatttgtgttgggaaagtttcaaatcatctcttctagctattttgaaatatacaatgtactgttgttaactatggtcacccttctgtgctgttgaacacttgaacttgttccttctgtttcactgtgtttgtgcccattaactaacccaccccttctagcctgtgataact
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45298136 408 +  49145316 catcttggctcacggcaacctccgcctcccaggatcaagcaattctcgtgcctcagcctcccgagtagctgggattacaggcgtgcgccaccacacccggctaa-ttttgtatttttagtagagatgaggtttctccatgttggccaggctggtctcaaaca-ctgacctcaggtgatccacccgcctcagcctcccaaagtgttgggagtacaggagtgagccactgcgcccggcTcgtttatcatctgtgttggggatgtttcaaatctcctcctctagctgttgtgaactgtacaatacattgttataaactgtagtcacccttctgtgctgcccaacactt-cacttattcttcctct----ccgcgtttgtgcccattaactaacccgccccttctagcctctgataact
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e papAnu2.chr19              47014236   0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=471.000000
s hg38.chr19_GL949751v2_alt     14468 2 +   1002683 ga
s panTro4.chr19              58951300 2 +  63644993 ga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55817559 2 +  60714840 ga
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45298544 2 +  49145316 ca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e nomLeu3.chr10             102582711 0 - 106955855 C
e chlSab2.chr6               46727010 0 +  50890351 C
e papAnu2.chr19              47014236 0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59874752 334 +  64156825 I

a score=499590.000000
s hg38.chr19_GL949751v2_alt     14470 321 +   1002683 ctctctctttaccttcatgagatctacttttttagctcctac--atgagtgagaacatgAAGttgtaaataaagttttattctaacaccgccacaccta---cttgtttacatatcagcgatggctgctttcatggtacaacagcagagtggggtagtctcagcagagatcctacagcccacaaagctggacgtgttactctctggtcctttTGTTTTCTGCCCTCTGGTCTAGGAGTTTGCAGCTCTGGGCGttttttgtttttttttttttttttttttgagatggagtctcactccattgcccaggctggaattcaatggcgc
s panTro4.chr19              58951302 317 +  63644993 ctctctctttaccttcatgagatctacttttttagctcctac--atgagcgagaacatgAGGttgtaaataaagttttattctaacactgccacaccta---cttgtttacatatcagcgatggttgctttcatggtacaacagcagagtggggtagtctcagcagagatcctacagcccacaaagctggacgtgttactctctggtcctttTGTTTTCTGCCCTCTGGTCTAGGAGTTTGCAGCTCTGGGCgttt----tgttttgttttgttttgttttgagatggagtctcactccattgcccaggctggaattcaatggcgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55817561 315 +  60714840 --ctctctttacctccatgagagccatttttttagctcccac--gtgagtgagaacatgAGGttgtaaataaagttttattcgaacaccaccacaccta---cttatttacatatcagccatggctgctttcatggtacaacagcagagtggggtagtctcagcagagatcctacagcccacaaagctggacttgttactctctggccctttTGTTTTCTGCCCTCTGGTCTAGGAGTTTGCGGCTCTGGGCGttt----ttttttgtttttttttcttttgagatggagtctcactccgttgcccaggctggaatgcaatggcgc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102582711 314 - 106955855 --ctctctttaccttcatgagatctacttttttagctcccac--atgagtgagaacatgaggttgtaaataaagttttattcgaacaccgccactccta---cttgtttacatgtcagcgatggctgctttcatggtacaacagcagagtggggtagtctcagcagagatcctacagcccacaaagctggacgtgttactctctggtcctttTGTTTTCTGCCCTCTGGTCCAGGAGTTTGCAGCTCTGGGCGttt----tttgtt-ttgtttttttttttgagatggagtctcactccgttgcccaggctggagtgcaatggcgc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59875086 304 +  64156825 CTCTctctttaccatcataagagccacttttttagctcccac--atgaatgagaacatgAGGttgtaaataaagttttattcgaacaccgccacatcta---cttgtttacatatcaacgatggctgctttcatggtacaacagcagaatggggtagtctcagcagagatcctacagcccacaaagctgggaatgttactctctggtcctttTATTTTCTGTCCTCTGGTCTAGGAGTTTGCAGGTCTGGGCGTGt----------------ttgttttttgagatgga-tctcactctgttgcccaggttggagtgcaatggtgt
i rheMac3.chr19             I 334 C 0
s chlSab2.chr6               46727010 304 +  50890351 ctctctctttaccttcataagagccagttttttagctcccac--atgaatgagaacatgAGGttgtaaataaagttttattcgaacaccgccacatcta---cttgtttacatatcaaagatggctgctttcatggtactacagcagaatggggtagtctcagcagagatcctacagcccagaaagctggaaatgttactctctagtcctttTGTTTTCTGCTCTCTGGTCTAGGAGTTTGCAGGTCTGGGGGTGt----------------ttgttttttgagatgaa-tctcactctgttgcccaggttggagtgcaatggtgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45298546 315 +  49145316 ctctctctttaccttcacgaggtccacctttttagctcccacatatgagtgagaacatgAGGttgtaaataaagttttattcaaacaccaccacacctacttcttgtttacatatcagcaatggctgctttcatggtacaa---cagaatggggtaacctcagcagagatcctactacccacaaagctggaaatgttactctctgctcctttTGTTTTCTGTTCTCTGGTCTAGGAATTTGCAGGTCTGGGCTTtt--------tgtttgtttgtttgtttgaggtggaatctcaccctgttgaccaggctggggtgcaatggtgc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e papAnu2.chr19              47014236   0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=941058.000000
s hg38.chr19_GL949751v2_alt     14791 417 +   1002683 catctcagctcactgcaatctctgcctcctgggttcaagcgattcttct-gcctcagtctcccaagtagcggggattacaggcgcctgccaccacgtccaactaattttttatttttagtagagatgggatttcaccatgttggtcaggctggtcttgaactctgacctcagatgatccacccacctcggcctcccaaagtgctgggatgacaggcgtgag----------------ccCGGCCGTTTTCTTTTTTGCTTGTTGTGCTTCCTGGAGATGCTCAGTAATTCTTACATTCTTTCCTGGATAGCTGGTCAATCATTATTTATTATTTCCTTGAATTGTTCTAGGAGGAAATGTGGGGTAGAAAGAGTATGGTGGGGTTCTTGGGCATGAATAATCCATAAATAAGTCAGATTTCTTTTTAAGACGAG
s panTro4.chr19              58951619 417 +  63644993 catctcagctcactgcaatctctgcctcctgggttcaagcgattcttct-gcctcagtctcccaagtagctgggattacaggcacccgccaccacgtccaactaattttgtatttttagtagagatgggatttcaccatgttggtcaggctggtcttgaactctgacctcagatgatccacccacctcggcctcccaaagtgctgggatgacaggcgtgag----------------ccCGGCCGTTTTCTTTTTTGCTTGTTGTGCTTCCTGGAGATGCTCAATAATTCTTACATTCTTTCCTGGATAGCTGGTCAATCATTATTTATTATTTCCTTGAATTGTTCTAGGAGGAAATGTGGGGTAGAAAGAGTATGGTGGGGTTCTTGGGCATGAATAATCCATAAATAAGTCAGATTTCTTTTTAAGATGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55817876 417 +  60714840 catcccggcccactgcaatctctgcttcctaggttcaagcgattctctt-gcctcagtctctcaagtagctgggattacaggcgcccgccaccacgtccaactaattttgtatttttagtagagatgggatttcaccatgttggtcgggctggtcttgaactctgacatcagatgatccagccgcctcagcctcccaaagtgctgggatgacaggcgtgag----------------ccCGGCCATTTTCTTTTTTGCTTGTTGTGCTTCCTGGAGATGCTCAATAATTCTTACATTCTTTCCTGGATAGCTGGTCAATCATTATTTATTATTTCCTTGAATTGTTCTAGGAGGAAATGTGGGGTAGAAAGAGTATAGTGGGGTTCTTGGGCATGAATAATCCATAAATAAGTCAGATTTCTTTTTAAGATGAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102583025 411 - 106955855 catctcggctcactgc-atctctgcctcctggg-tcaagcgattctcctggcttcagtctcccagtaagctgggattacaggcgcccaccaccacgtccaactaa-ttagta-ttttagtagagatgggatttcaccatgttggtcaggctggtcttgaactctgacctcagatgatccacccgccccggcctcccaaagtgctgggatgacaggtgtgag----------------ccCGGCCATTTTCTTTTTTGC---TTGTGCTTTCTGGAGATGTTCAATAATTCTTACATTTTTTCCTGGATAGCTGATCAATCATTATTTCTTATTTCCTTGAATTGTTCTAGGAGGAAATGTGGGGTAGAAAGAGTATGATGGGGTTCTTGGGCATGAATAATCCATAAATAAGTCAGATTTCTTTTTAAGATGAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59875390 417 +  64156825 catctcagctcactgcaacctctgcctcctgggttcaagcgattctctt-gcctcagcctcccaagtagctgggattacgggcgcccaccatcatgtcccgctaattttgtatttttagtagagatgggatttcaccatgttggtcaggctggtcatgaactctgacctcagatgatccacccgcctcggcctcccaaagtgccgggatgacaggcatgag----------------ccTGGCCATTTTCTTTTTCGCTTGTTGTGCTTCCAGGAGATGCTCCATAATTCTTACATTCTTTGCTGGATAGCTGATCAATAATTATTTATTATTTCCTTGAATTGTTCTAGGAGGAAATGCGGGGTAGAAAGAGTATGGTGGGGTCCTTGGGCATGAATAATCCATAAATAAGTCAGATTTCTTTTTAAGATGAG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47014236 413 +  51301725 catctcggctcactgcaacctctgcctcctgggttcaagcgattctctt-gcctcagcctcccaagtagctgggattacaggcgcccaccaccatgtcccactaattttgtatttttagtagagatgggatttcaccatgttggtcaggctggtcatgaactctgacctcagatgatccacccgcctcggcctcccaaagtgccgggatgacaggcatgag----------------cctggccgTTTTCTTTTTCGCTTGTTGTGCTTCCAGGAGATGCTCCATAATTCTTACATTCTTTGCTGGATAGCtgatcaataattatttattatttccttgaatTGTTCTAGGAGGAAATGTGGGGTAGAAAGAGTATGGTGGGGTTCTTGGGCATGAATAATCCATAAa----tcagatttctttttaagatgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46727314 417 +  50890351 catctcagctcactgtaacctctgcctcctgggttcaagcaattctctt-gcctcagcctcccaagtagctgggattacgggcgcccaccaccatgtcccgctaattttatatttttagtagagatgggatttcaccatgttggtcaggctggtcatgaactctgacctcagatgatccacccgcctcggcctcccaaagtgccgggatgacaggcctgag----------------ccTGGCCGTTTTCTTTTTCGCTTGTTGTGCTTCCAGGAGATGCTCCATGATTCTTACATTCTTTGCTGGATAGCTGATCAATAATTATTTATTATTTCCTTGAATTGTTCTAGGAGGAAATGCGGGGTAGAAAGAGGATGGTGGGGTTCTTGGGCATGAATAATCCATAAATAAGTCAGATTTCTTTTTAAGATGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45298861 428 +  49145316 catctcggctcactgcaacctctgcctcctgggttcaagcgattttcct-gcctcaccctcccgagtaagtgggattgcaggcgcccatcaccacacccagctaattttgtatttttaatagagatgggatttcaccatgttggccaggctggtcttgaactctgacctcagccgagccacctgcctcagcctcctgaagtgct-ggattacaggcgtgcgccaccaagcccggccCCCTGGCCATTTTCTCTTTTGTTTGTTGTGCTTCCTGGAGAGGTTCAATAATACTTGCATTCTCTGCTGGATAGCTGATCAATAATAA----TTATTCCCTTGAATTGTTCTAGGAGGAAATGTGGGGTAGAAAGAGTGTGGTGGGGTTCTGGGGCATGAATACTCCGTAAATAAGCCAGATTTCTTTTTAAGATGAG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19460281 3674 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=949861.000000
s hg38.chr19_GL949751v2_alt     15208 376 +   1002683 AAACTTAATTTTATTGATATGGACGAAGAGCAAGGAA-ACACAGT-ATCTGCATCTCCAGATTTCCGATAACCTTGGCCAGCACGATCCCC--------CCTCCTTTAGTGGCCAGGGCTGTCTTCTTGCTACACTTTCAGTGCCGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CTGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCC-TTGGGGG--TCTGCCGTCTTTGGAGAAAATAGATGAATA-----------TTAGAACTGAG-tgttcaatatggcagccactagccacacatggctattgacatttaagttaattacaattaaatttaatttaaaacccaggtcctcggtcacaccagatgcattt
s panTro4.chr19              58952036 377 +  63644993 AAACTTAATTTTATTGATATGGACGAAGAGCAAGGGACACACAGT-ATCTGCATCTCCAGATTTCCGATAACCTTGGCCAGCACGACCCCC--------CCTCCTTTAGTGGCCAGGGCTGTCTTCTTGCTACACTTTCAGTGCCGCATATTCACGAGATCCTGGGGGCTCCTGGGTGGTGT-CTGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCC-TTGGGGG--TCTGCCGTCTTTGGAGAAAATAGATGAATA-----------TTAGAACTGAG-tgttcaatatggcagccactagccacacatggctattgacatttaagttaattacaattaaatttaatttaaaatccaggtcctcagtcacaccagatgcattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55818293 380 +  60714840 AAACTTAATTTTATTGATACGGATGAAGAGCGAGGGACACAGAGTCATCTGCATCTCCACGTTTCCGATAACCTTGGCCAGCACAATCCCC--------CCTCCTTTAGTGGCCGGGACTGTCTTCTTGCTACACTTTCAGTGCTGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CAGAAGCTGCCTCAGACAGGGCACTGGTGCTTAGCTCAGCATAGGTCACTCCTTTGGGGG--TCTGCTGTCTTTGGAGAAAATAGATGAATA----------TTTAGAACTGAG-tgttcaatatggcagccactagccacacatggctattgacatttaaattaattacaattaaatttaatttaaaatccaggtcctcggtcacaccagatgcattt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102583436 378 - 106955855 AAACTTAATTTTATTGATACGGATGAAGAGCAAGGGACACAGAGTCATCTGCATCTCCATGTTTCCGATAGCCTTGGCCAGCACGATCCCC--------CATCCTTTAGTGGCCGGGGCTGTCTTCTTGCTACACTTTCAGTGCTGCATATTCATGAGATCCTGGGGGTTCCCGGGTGGTGT-CGGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCT-TTGGGGG--TCTGCCGTCTTTGGAGAAAATAGATGAATA-----------TTAGAACTGAG-tgttcaatatggcagccactagccacacatggctattgacatttaaattaattacaattaaatttaatttaaaatccaggtcctcggtcacaccagatgcattt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59875807 373 +  64156825 AAACTTAATTTTATTGATACGGATGAGGAGCAAGGGACACAGAGTCATCCGCATCTCCACGTTTCTGATAACCTTGGCCAGCACGATCCCC--------CCTCCTTTAGTGGCCCGGGCTGTCTTCTTGCTACACTTTCACTGCCGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CAGAAGCTGCCTCAGACAGGGCATTGATGTTTAGCTCAGCATACGTCACTCC-TTGGGGG--TCTGCCGTCTTTGGAGAAAATAGATGAATA-----------TTAGAACTGAG-TGGTcaatatggcagccactagctacacgtggctattgacatttaaattaattac-----aattaaattcaaactccaggtcctcggtcacaccacatgcattt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47014649 378 +  51301725 aAACTTAATTTTATTGATACGGATGAGGAGCAAGGGACACAGAGTCATCTGCATCTCCACGTTTCTGATAACCTTGGCCAGCATGATCCCC--------CCTCCTTTAGTGGCCCGGGCTGTCTTCTTGCTACACTTTCACTGCCGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CAGAAGCTGCCTCAGACAGGGCATTGATGTTTAGCTCAGCATACGTCACTCC-TTGGGGG--TCCGCCGTCTTTGGAGAAAATAGATGAATA-----------TTAGAACTGAG-TGGtcaatatggcagccactagctacatgtggctattgacatttaaattaattacaattaaattaaattaaaaatccaggTCCTTGGTCACACcacatgcattt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46727731 378 +  50890351 AAACTTAATTTTATTGATACGGATGAGGAGCAAGGGACACAGAGTCATCCGCATCTCCACGTTTCTGATAACCTTGGCCAGCACGATCCCC--------CCTCCTTTAGTGGCCCGGGCTGTCTTCTTGCTACACATTCACTGCCGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CAGAAACTGCCTCAGACAGGGCATTGATGTTTAGCTCAGCATACGTCACTCC-TTGGGGG--TCTGCCGTCTTTGGAGAAAATAGATGAATA-----------TTAGAACTGAG-TGGTcaatatggcagccactagccacacgtggctattgacatttaaattaattacaattaaattaaattcaaaatccaggtccttggtcacaccacatacatgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45299289 382 +  49145316 AAACTTAATTTTATTGATACGAATGAGAAGCAAGGGACAC--GGTCATCCACATCTCCACATTTTCAATGACCTCAGCCGGCACAATACCC--------CCTCCTTCGGTGGCCTGTGTTGTCTTGTTGCTACACTTTCAGTGCCACATATTCGTGAGATCCTGGGGGCTCCAGGGTAGTGT-CAGCAGCTGCCTCAGACAGGGCGTGGGTGCTTAGCTCAGCAGAGGTCACTCC-TTGGGGG--TCTGCGGTCTTTGGGGAAAACACACGAACACAGACACGCATTGAACACTGAG-TGGTcagtatggcaaccactagccacccatggctcttgatgtttaaattaattac-----agttaaatttaaaatccaggtcctcggtcacgcgagatgcattt
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19463955 381 - 122678785 aaacttaattttattactatggattATGAACTAAGGACAC--AGTGACCTG-GTTGCCATGTGTCCAGTCATCC---CCAGCATGTTAACCCATGTTCTCCTTCTCCAGGGGTCCG-GCTG--TTCTTCCTTCACCTGCCGCACTGCACATTCACAAGATCCTGGGGACTCCTCGGTGGGGCACAGAAGCTGCCTTAGGTGGTGCCTTGGGGTTTAGATCAGCATGGCTCACTCC-CTGGGGGGTCTTTCAGTCTTTGAGAAAGAGAGACAGGAT-----------TTAGAGCTTAgctgtccaatatggtacctacaacccacatatggctatttacatgtaagcaaattaaaattacatttaatttaaagctcaggtcctcagtcacagcaggtacagtt
i canFam3.chr1              I 3674 I 1974
e macFas5.chr19              54882420 20327 +  59248254 M

a score=937443.000000
s hg38.chr19_GL949751v2_alt     15584 478 +   1002683 cTTTTTCTTTTCTGTTTTTATAACCCTTTATGCCTGTGACATCAATGGATCTGCGTAAGCCTTTTTTCAttttttttaaatttttatttatttatttattttgggacagagtctggctc-tgtcgcccaggctggagtgcggtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagccattctcctggctcagcctcctgagtagctgggattacaggcgcccactaccacgcccagctaattttttgtatctttagtagagatggggtttcaccatgttaaccaggatggtctcgatctcctgacctc--atgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgc--gcccggccC-----------------------------------------ATGCATAAGCCTTTTAAATGGAGATTTTGGTTCCCATTAGGGGAGTTTCGTGACTTGTCTAAGACCACATGCGTGATAAACAG--TATACATTTCT
s panTro4.chr19              58952413 478 +  63644993 cTTTTTCTTTTCTGTTGTTATGACCCTTTATGCCTGTGACATCAATGGATCTGCATAAGCCTTTTTTCATTTTTTAAAAAtttttatttatttatttattttgagacagagtctggctc-tgtcgcccagcctggagtgcggtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagccattctcctggctcagcctcctgagtagctgggattacaggcgcccaccaccacgcccagctaattttttgtatctttagtagagatggggtttcactgtgttaaccaggatggtctcgatctcctgacctc--atgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgc--gcccagccC-----------------------------------------ATGCATAAGCCTTTTAAATGGAGATTTTGGTTCCCATTAGGGGAGTTTCGTGACTTGTCTAAGACCACATGGGTGATAAACAG--TATACATTTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55818673 479 +  60714840 cTTTTTCTTTTCTGTTTTTATAACCCTTTATGTCTGTGACATCAATGGATCTGCGTAAGCCTTTTTTCAtttttt-aaaatttttatttatttgtttattttgagacagagtctcgctc-tgttgcccaggctagggtgcagtggcacgatctcagctcactgcaacctccgcctcccgggttcaagccattctcctggctcagcctcctgagtagctgggattacaggtgcccgccaccacgcccagctaattttttgtatctttagtagagacggggtttcacagtgttaaccaggatggtctcgatttcctgacctt--gtgatccgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccgc--gcccagccC-----------------------------------------GTGCATAAGCCTTTTAAATGGAGATTTTGGTTCCCATTAGGGGAGTTTCATGACTTGTCTAAGACCACACAGGTGATAAACAAATAGAACATTTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102583814 475 - 106955855 cTTTTTCTTTTCTGTTTTTATAACCCTTTATGTCTGTGACATCAATGGATCTCCGTAAGCCTTTTCTCAtttttt-taaatttttatttatgtatttattttgagacagagtctcactc-tgttgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgcctcccgggttcacaccattctcctggctcagcctcctgagtagctgggattacaggcgcccgccaccacgcccagctaattttttgtatctttagtagagacagggtttcactgtgttaaccaggatggtctcaatctcctgacctc--gtgatccgcccgcctcggcctcccaaagtgtggggattacaggcgtgagccaccgc--gcccagccC-----------------------------------------GTGCATACGCCTTTTAAATGGAGATTTTGGTTCTCATTAGGGGAGTTTCGTGACTTGTCTAAGACCACACGGGTGATAAAC----TATACATTTCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59876180 464 +  64156825 cTTTTTCTTTTCTGTTTTTATAGCCCTTTATGTGTGTGACATCAATGGATTGGCGTAAGACTTTTATttttttatt----tttatttttattttttta-tttgagacagaatctcgctc-tgttgcccaggctggagtgcagtgccgtgatctcggctcactgtaacctccgcctcccgggttcaagtcattttcctggctcggaat-ccaagcagctgggattacaggcgcccgccaccacgcccagctaattttttgtatctttagtagagatgaggtttcactgtgttagccagggtggtctcgatctcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgc--acccggccC----------------------------------------GGTGCATATGCCTTTTAAATAGAGATTTTGGTTCCCCTTTGGGGAG---------TTATCTAAGACCACACGGGTGATAAATAG--TAGACGTTTCT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47015027 469 +  51301725 ctttttcttttctgtttttatagccCTTTATGTGTGTGACATCAATGGATCGGcgtaagacttttatttttttatttttatttatttttatttattta-tttgagacagaatctcgctc-tgttgcccaggctggagtgcagtgccgtgatctcggctcactgtaacctccgcctcccgggtttaagtcaTTTTCCTGGCTCGGaatcccaagcagctgggattacaggcgcccgccaccacgcccagctaattttttgtatctttagtagagatgaggtttcactgtgttagccagggtggtctcgatctcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgc--acccagccc----------------------------------------cgtGCATATGCCTTTTAAATAGAGATTTTGGTTCCCCTTTGGGGAG---------TTGTCTAAGACCACACAGGTGATAAATAG--TAGACGTTTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46728109 469 +  50890351 cTTTTTCTTTTCTGTTTTTATAGCCCTTTATGTGTGTGACATCAATGGATCTGCGTAAGACTTTTAtttttttatttttatttttatttatttatcta-tttgagacagaatctcgctc-tgttgcccaggctggagtgcagtgccgtgatctcggctcactgtaacctccgcctcccgggttcaagtcattttcctggctcggaatcccaagtagctgggattacgggcgcccgccaccacgcccagctaattgtttgtatctttagtagagatgaggtttcactgtgttagccagggtggtctcgatctcctgacctt--gtgatctgcctgcctcggcctcccaaaatgctgggattacaggcgtgagccaccgc--acccggccC----------------------------------------TGTGCATATGCCTTTTAAATCGAGATTTTGGTTCCCCTTTGGGGAG---------TTGTCTAAGACCACACGGGTGATAAATAG--TAGACGTTTCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45299671 463 +  49145316 cTTTTTCTTTTCTGTtttta-------------------------------------------ttatttatttat-----------tttatttatt---tttgagacggagtttcgctcttgttacccaggctggagtgcaatggcgcgatctcggctcaccgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagctgggattacaggcacccgcctat---cccggctaatta-ctgtatttttagtagagacgaggcttcaccatgttggccaggctggtcttgaacacctgacctctggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgtgcccggccTCTTTCCTGTTTTTAAACCCTTTATTTGTGACATCAATGGATCTGCATAAGCCTTTTAAATGGAGATTTTGGTTCCCGTTATGAGAGTTTTGTGACTCGTCTACGATCACATGGGTGATAAACAG--TGGACATTTCT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19464336 1974 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=191023.000000
s hg38.chr19_GL949751v2_alt     16062  83 +   1002683 GTATGGGCTTAACCAGGAGGCACACACGACCA----GCCCATTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------GGGACTCCTAAGCGGGAGGACTCAC
s panTro4.chr19              58952891  83 +  63644993 GTATGGGCTTAACCAGGAGGCACACACGACCA----GCCCATTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------GTAACTCCTAAGCGGTAGGACTCAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55819152  87 +  60714840 GTACGGTCTTAACCAGGAGGCACACACGACCAATGGGCCGATTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------GGGACTCCTAAGCGGGAGGACTCAC
i ponAbe2.chr19             C 0 M 2486
s nomLeu3.chr10             102584289  83 - 106955855 GTACGGGCTTAACCAGGAGGCACACACGACCA----GCCCATTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------AGGACTCCTAAGCGGGAGGACTCAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59876644  83 +  64156825 GTATGGGCTTAACCAGGAGGCAGACACGACCA----GCCCGTTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------GGGACTCCTAAGCGGGAGGACTCAC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47015496  83 +  51301725 GTATGGGCTTAACCAGGAGGCAGACACGACCA----GCCCGTTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------GGGATTCCTAAGCGGGAGGACTCAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46728578  83 +  50890351 GTATGGGCTTAACCAGGAGGCAGACACAACCA----GCCCGTTGTGGTGAGGGAG---------------------------------------------------CTCTTGT--------GGGACTCCTAAGCGGGAGGACTCAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45300134 142 +  49145316 GTGTGGGCTTAACCAGCAGACAGACACTACCA----GCCCAGCGTGGTAAGGGAGGGACTCATAGgtagagacaggtttcaccacgttcgtcaggctggtctcgaactcctgtcatggtgaAGGACTCCCAAGCTGGAGGACTCAC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19466310  69 - 122678785 GTATGGGCTGAACTGGGAGGCAAACAAGGTCA----GCATATGGTGATAAGTGAC-----------------------------------------------------CTTGT--------G------------GGGAGAACTCAT
i canFam3.chr1              I 1974 C 0
e macFas5.chr19              54882420 20327 +  59248254 M

a score=153677.000000
s hg38.chr19_GL949751v2_alt     16145 81 +   1002683 CGAGAGAGATACCC-TTTCCATATTGGATAAATCTGCCTCTGAGTGAGAAAG---GAAAAAAAAAAATCAGTTCTCAG-CTGCAGA
s panTro4.chr19              58952974 81 +  63644993 CGAGAGAGATACCC-TTTCCATATTGGATAAATCTGCCTCTGAGTGAGAAAG---GAAAAAAAAAAATCAGTTCTCAG-CTGCAGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102584372 85 - 106955855 CGAGAGAGATACCCTTTTCCATATTGGATAAATCTGCCTCTGAGTGAGaaagaaaaaaaaaaaaaaaTCAGTTCTCAG-CTGCAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59876727 82 +  64156825 CGAGACAGATACCC-TTTCCATCCTGGATAAATCTGCCTCTGAGTGAGAGAG--AAAAAAAAGAAAATCAGTTTTCAG-CTGTAGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47015579 82 +  51301725 CGAGACAGATACCC-TTTCCATCCTGGATAAATCTGCCTctgagtgagagag--aaaaaaaagaaaatcagttttcaG-CTGTAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46728661 82 +  50890351 CGAGACAGATACCC-TTTCCATCCTGGATAAATCTGCCTCTGAGTGAGAGAG--AAAAAAAAGAAAATCAGTTTTCAG-CTGTAGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45300276 81 +  49145316 CGAGACATATACCC-TTTCCATCTTGAATAAATCTGTATCTGAGTGAGAGAG---AGAGAAAAAAAATCAGGTCTCAG-CTGCAGA
i calJac3.chr22             C 0 I 1135
s canFam3.chr1               19466379 76 - 122678785 -GAGACACGTATCC-TTTCCAGGTTGGATAAATCTGCATGTGAGTAAAAGGG--------GGAAAAATCAGCTCTCAGATTGCAGG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=175542.000000
s hg38.chr19_GL949751v2_alt     16226 92 +   1002683 AGTCAGAACTT-AGTCTTTCTATCCGGTGATTCCCTTAAA----CTTCCCCTGTCCCTTACCGGCAGCCTCCTGCTCCGGAAGTTTGGAATGGCTGG
s panTro4.chr19              58953055 92 +  63644993 AGTCAGAACTT-AGTCTTTCTATCCGGTGATTCCCTTAAA----CGTCCCCTGTCCCTTACCGGCAGCCTCCTGCTCCGGAAGTTTGGAATGGCTGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102584457 92 - 106955855 AGTCAGAACTT-AGTCTTTCTATCCGGTGATTCCCTTAAA----CTTCCCCGGTCCCTTACCGGCAGCCTCCTGCTCTGGAAGTTTGGAATGGCTGG
i nomLeu3.chr10             C 0 M 550
s rheMac3.chr19              59876809 92 +  64156825 AGTCAGAACTT-AGTCTTTCTATCCGGTGATTCCCTTACA----TTTTCCCTGTCCCTTACCAGCAGCCACCTGCTCCGAAAGTTTGGAATGGCTGA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47015661 93 +  51301725 AGTCAGAACTTAAGTCTTTCTATACGGTGATTCCCTTACA----TTTTCCCTGTCCCTTACCAGCAGCCTCCTGCTCCGAAAGTTTGGAATGGCTga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46728743 92 +  50890351 AGTCAGAACTT-AGTCTTTCTATCTGGTGATTCCCTTACA----TTTTCCCTGTCCCTTACCAGCAGCCTCCTGCTCCGAAAGTTTGGAATGGCTGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301492 86 +  49145316 agccAGAACTT-AGCCTTTCTGTCTGGTTATTCCCT----------TCCCCTATCCCTTACCAGCAGCCTCTCGTTCTGGAAGTTTGGAATGACTGG
i calJac3.chr22             I 1135 C 0
s canFam3.chr1               19466455 95 - 122678785 AGTGAG-ACTT-ATTCTTTCTATCCCGTTGTTCCCCTGTGGTTTCTTCCCTTACCACTCACCTGCAGCCTCCTCCTTGGGAAATTTGGAATGTCTGG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=342465.000000
s hg38.chr19_GL949751v2_alt     16318 294 +   1002683 TTCTGAAAGAGAGAGACACACGTG--AAAGGATGGGATGTGAAGATTTCGGGGAGAGGGTGAGGGCAATGGAGGGGAGAGGAAGG--------------------GAGAAGAAGGGAGAGGAGGAAGGTCACAGAATGGGCTGGGGTGGGGGCTCAGGGTGCCAATCCCGGATGTGCCAATGGGTTCCCTTGAGAATGACATGGGAA-TAAGTGGAGCATGAGCTATGCCAAG--CATCTACCTCTTGGTGGATTCCTCA---GATGATGAACCTACAAA------------------------------------------------AAATGCA-----------------------------------------------------GGAGGAATTTACCTACCGAG-AAAATCCTTCACTCC
s panTro4.chr19              58953147 315 +  63644993 TTCTGAAAGAGAGAGACACACATG--AAAGGATGGGATGTGAAGATTTCGGggagagggtgagggcaatggaggggagaggaagggagaagaggggagaggaagagagaagaggggagaggaggAAGGTCACAGAATGGGCTGGGGTGGGGGCTCAGGGTGCCAATCCCGGATGTGCCAATGGGTTCCCTTGAGAATGACATGGGAACTACGTGGAGCATGAGCTATGCCAAG--CATCTACCTCTTGGTGGATTCTTCA---GATGATGAACCTACAAG------------------------------------------------AAATGCA-----------------------------------------------------GGAGGAATTTACCTACGGAG-AAAATCCTTCACTCC
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59876901 285 +  64156825 TTCTGAGAGAGAGAGAGACACATG--AAAGGATGGGATGTGAAGATTTCGGggagagggtgagggcagtggaggggagaggaggg------------------------------aagtggagggAGGTCACAGAATGGGCTGGGGTGGGAGCTCAGGGTACCAATCCCGAATGTGCCAATGGGTTCCCTGGAGAATGACATGGGAATTAAGGGGAGCATGAGCTATGCCAAG--CATCTACCTTTTGGTGGATTCTTCA---GGTGACGAACCTACAAA------------------------------------------------AAATGCA-----------------------------------------------------GGAGGAATTTACCTACCGAG-AAAATCCTTCACTCC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47015754 287 +  51301725 ttctgagagagagagagacacgtGAAAAAGGATGGGATATGAAGATTTCggggagagggtgagggcaatggaggggagaggaggg------------------------------gagtggagggaggtcacagaatgggctggggtgggggctcagggTACCAATCCCAAATGTGCCAATGGGTTCCCTGGAGAATGACATGGGAATTAAGGGGAGCATGAGCTATGCCAAG--CATCTACCTTTTGGTGGATTCTTCA---GGCGACGAACCTACAAA------------------------------------------------AAATGCA-----------------------------------------------------GGAGGAATTTACCTACCGAG-AAAATCCttcactct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46728835 285 +  50890351 TTCTGAGAGAGAGAGAGACACGTG--AAAGGATGGGATATGAAGATTTCGGggagagggtgagggcaatggaggggagaggaggg------------------------------gagtggagggaggTCACAGAATGGGCTGGGGTCGGGGCTCAGAGTACCAATCCCAAATGTGCCAATGGGTTCCCTGGAGAATGACATGGGAATTAAGGGGAGCATGAGCTATGCCAAG--CATCTACCTTTTGGTGGATTCTTCA---GGCGAAGAACCTACAAA------------------------------------------------AAATGCA-----------------------------------------------------GGAGGAATTTACCTACCGAG-AAAATCCTTCACTCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301578 269 +  49145316 TTCT--AAGAGAGAGAAACACATG--AAAGGACGGGATGTGAAGACTGGGGGGAGAGGGTGAGGGCTATGGAGGGGAGAGGAGGT--------------------------------------------CACAGGCCGGGCAGGAGTAGGGGCTTAGGGCACCAGTCCTGGATGTGCCAGTGGATTCCCTGGAGAATGACATGGGAATTGGGTGGAGCATACGCTATGCCCAG--CGTGTACCTCTTGGAGGATTCTTCA---GGCGAGGAACCTATAAA------------------------------------------------AAATGCA-----------------------------------------------------GGAGGAATGTACCTACTGAG-AAAACGCTTCGCCCT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19466550 329 - 122678785 TTCT--AAGAGACAGAAACACATT--AAAGCATGGGATCTAAAGACT--GGGGAGGATGGCAGGGCTTTGGAGACTAGAGGCATG------------------------------GG----------------------------------------------AATCATAGATGTGCAATCAGGGTCTCTGAGGAAGG-------------GAGAGGCACGAGATACATCAAGTATATCTACCTTTTGGTGGCTTCTTCATGTGATGATGAACCTACAAAACAAAACAAAAAGGGAGGAATTTATATTtaaaaaattttttttaatttaaattcaatttcctgacataaagtataatacccagtgctcatctcatcatgtgccctcAGGGAGAAATTTATCTAATAAGAAAAATCTTTCATTTC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55819239 2486 +  60714840 M
e nomLeu3.chr10             102584549 550 - 106955855 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=36324.000000
s hg38.chr19_GL949751v2_alt     16612 17 +   1002683 CCCTCTCTCCCTTTGCG
s panTro4.chr19              58953462 17 +  63644993 CCCTCTCTCCCTTTGCG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585099 17 - 106955855 CCCTCTCTCCCTTTGCG
i nomLeu3.chr10             M 550 C 0
s rheMac3.chr19              59877186 17 +  64156825 CCCTCCCTCCCTTTGCG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47016041 17 +  51301725 ccctctctccctttgcG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46729120 17 +  50890351 CCCTCTCTCCCTTTGCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301847 17 +  49145316 CCCTCTCTCCCTTTGTG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19466879 17 - 122678785 ATCCCCCTTCCCCAGCG
i canFam3.chr1              C 0 I 181
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=754002.000000
s hg38.chr19_GL949751v2_alt     16629 367 +   1002683 TTCTCTGAGCTCACTGTGCTGGCTGCATCTGTAGATgatgaagactgagaggaagaggagaaggatggagatgcagctgaagatggcgacaaagatggTTCTGGTGTCTGGAGGGGGAAGAGCAGGTCAGGGAATCAGCCTGGCTCCTGAAATCCACTGATAGGGGCGAGCCGAAAA--GCTAAGAGAAGCCagacagatggcctggcttccaagcc--tggatctcccacctcggagctggaacttcctattgctttggggaatttccttaatcttctccaagcttctgtttccccatctgtaaagtgaggatagcagcagtagctactttattggatgg-------------tgggtcagtacctatagaaagggctggaac
s panTro4.chr19              58953479 367 +  63644993 TTCTCTGAGCTCACCGTGCTGGCTGCATCTGTAGATGATGAAGACTGAGAGGAAGAGGAGAAGGATGGAGATGCAGCTGAAGATGGCGACAAAGATGGTTCTGGTGTCTGGAGGGGGAAGAGCATGTCAGGGAATCAGCCTGGCTCCTGAAATCCACTGATAGGGGCGAGCCGAAAA--GCTAAGAGAAGCCagacagatggcctggcttccaagcc--tggatctcccaccttggagctggaacttcctattgctttggggaatttccttaatcttctccaagcttctgtttccccatctgtaaagtgaggatagcagcagtagctactttattggatgg-------------tgggtcagtacctatagaaagggctggaac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585116 367 - 106955855 TTCTCTGAGCTCACCGTGCTGGCTGCATCTGTAGATGATGAAGACTGAGAGGAAGAGGAGAAGGATGGAGATGCAGCTGAAGATGGCGACAAAAATGGTTCTGGTGTCTGGAGAGGGAAGAGCAGGTCAGAGAATCAGCCTGGCTCCTGAAATCCACCGATGGgggtgagctgaaaa--gctaagaggagccagacagacggcctggcttccaagcc--tggatctcccacctcggagctggaatttcctattgctttggggaatttccttaatcttctccaagcttctgtttccccatctgtaaagtgaggatagcagcagtagctactttattggatgg-------------tgggtcagtacctatagaaagggctggaac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59877203 367 +  64156825 TTCTCTGAGCTCACCGTGCTGGCTGCATCTGTAGATGATGAAGACTGAGAGGAAGAGAAGAAGGATGGAGATGCAGCTGAAGATGGCGACAAAGATGGTTCTGGTGTCTGGAGGGGGAAGAGCAGGTCAGGGAATCAGCCTGGCTCCTGAAATCCACCGATAGGGGTGagcagaaaa--gctaagaggagccagacagacggcccggcttccaagcc--tggatctcccaccttggagctgaaacttcctattgctttggggaatttccttaatcttctccaagcttctgtttccccatctgtaaagtgagtgtagcagcagtacctattttgttggctgg-------------tgggtcagtacctatagagagggctggaac
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47016058 366 +  51301725 TTCTCTGAGCTCACCGTGCTGGCTGCATCTGTAGATGATGAAGactgagaggaagagaagaaggatggAGATGCAGCTGAAGATGGCGACAAAGATGGTTCTGGTGTCTGGAGGGGGAAGAGTAGGTCAGGGAATCAGCCTGGCTCCTGAAATCCACCGATAGGGGTGAGCAGAAAA--GCTAAGAGGAGCCAGACAGACGGCCCGGCTTCCAAGCC--TGGATCTCCCACCTT-GAGCTGAAACTTCCTATTGCTTTGGGGAATTTCCTTAATCTTCTCCAAgcttctgtttccccatctgtaaagtgaggacaGCAGCAGTACCTATTTTGTTGGCTGG-------------TGGGTCAGTACCTATAGAGAGGGCTGGAAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46729137 367 +  50890351 TTCTCTGAGCTCACCGTGCTGGCTGCATCTGTAgatgatgaagactgagaggaagagaagaaggatggagatgcagctgaagatgGCAACAAAGATGGTTCTGGTGTCTGGAGGGGGAAGAGCAGGTCAGGAAATCAGCCTGGCTCCTGAAATCCACCGATAGgggtaagtagaaaa--gctaagaggagccagacagacggcctggcttccaagcc--tggatctcccacctcggagctgaaacttcctattgctttggggaatttccttaatcttctctaagcttctgtttccccatcggtaaagtgaggacagcagcagtacctattttgttggctgg-------------tgggtcagtacctatagagagggctggaac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301864 365 +  49145316 CTCTCTGAGCTCACCGTTCTGGCTGCATCTGTAGATGACGATGACTAAGAGGAAGAGGAGAAGGATGGAGACACAGCTGAAGATGCTGACAAAGATGGCTCTGGTGTCTAGAGA-GGAAGAGCAGGTCAGGGAATCAGCCTGGCTCCTGAAATGCGCTGA-GAGGGTGagcagaaaa--gctaagaggagccagccagacagcctggcttccaagcc--tggatctcccacctcggatctggaacttcctattgctttggggaattaccttaatcttctccaagcttctgtttcctcgtctgtaaagtgagggtagcagcagtagctactgtagtggatgg-------------tgggtcagtacccatagagaaggctggaac
i calJac3.chr22             C 0 T 1028
s canFam3.chr1               19467077 365 - 122678785 TTCCCCAAACTCACCATGCTGGGTGCATATGTTGATGAAGAAGATGGAGAGGAAGAGGAGCAAAATGGAAAGGCAGGTGAACGTAGCAGCAAAGATGAATCTGGTGGCTAGTGGGAGAGGAACAGGTAGTAGAATCAGTTTGGTTCCTGAGACACCCTGATCAAGCTTAGCAGACAGGTGCCAAg-------aaccagataacctggtttccaaaactttgcagctgccacttctgagctgtaacttccaattactgc-gggaatttccttca-cctccctgaccttttgtttccctgtt--caaagtgaggacaaaaacagtagctgcTGGACTGGATGGAGCTGGGGTTAACTGGGTGGGTCCTGGCAGAGAGG--------
i canFam3.chr1              I 181 C 0
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=108538.000000
s hg38.chr19_GL949751v2_alt     16996 84 +   1002683 agtgcttggcgcataggaaattccaaaaatTCCCAGGGAATGTTTGGTGCATAGCAATGAtattgatcatttattgtgagccag
s panTro4.chr19              58953846 84 +  63644993 agtgcttggcgcataggaaattccaaaaatTCCCAGGGAATGTTTGGTGCATAGCAATGAtattgatcatttattgtgagccag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585483 84 - 106955855 agtgcttggcgcataggaaattccaaaaatTCCCAGGGAATGTTTGGTGCATAGCAATGATATTGATCATTTATTGTGAGCCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59877570 75 +  64156825 actgcttggcgcatagg---------aaattcccagggaatgttTGGTGCATAGCAATGAAATTGATCATTTATTGTGAGCCAG
i rheMac3.chr19             C 0 I 1256
s papAnu2.chr19              47016424 74 +  51301725 ACTGCTTGGCGCATAGG---------AAATTCCCAGGGAATGTTTGGTGCATAGCAATGAAATTGATCATTTATTGTGAGCCA-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46729504 75 +  50890351 actgcttggcacatagg---------aaattcccagggaatgttTGGTGCATAGCAATGAAATTGATCATTTATTGTGAGCCAG
i chlSab2.chr6              C 0 I 323
s canFam3.chr1               19467442 71 - 122678785 ---GCCTCACACAAGGG---------AAATCCCCAATAAGTGTTTTAGCCATAGTAATAATTCCTATTATttattgtgagctg-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45302229 1028 +  49145316 T
e macFas5.chr19              54882420 20327 +  59248254 M

a score=7377.000000
s hg38.chr19_GL949751v2_alt     17080 26 +   1002683 ctctgttccaggtgctccatatatat
s panTro4.chr19              58953930 26 +  63644993 ctctgttccaggtgctccatatatat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585567 21 - 106955855 CTCTGTTCCAGTTGCTCCata-----
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47016498 10 +  51301725 -----------GTGCTttaca-----
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19467513 26 - 122678785 ccctgtgctaggcgcttcacacatgt
i canFam3.chr1              C 0 I 817
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45302229 1028 +  49145316 T
e chlSab2.chr6               46729579 323 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59877645 1256 +  64156825 I

a score=83016.000000
s hg38.chr19_GL949751v2_alt     17106 238 +   1002683 ATATACGTGTGTGTGTGTGtatatatatatataaatgtatatatatgtgtgtgtatatataaatgtgtatatatatatatatatatatatatatatatacatatatatatatatataCACACttttttt-tttttgagatggagtcgtgttctgtcacccaggctggagtgtgatcctggctcactgcaacctccacctccctggttcaaacaattctcctgactcagcctcctgagta
s panTro4.chr19              58953956 221 +  63644993 ata----tgtatgtgtgtatatatatatatataaatgtatatatatgtgcgaatatatataaatgtgtgtatatgtacatatatat--------------atatatatatatataCACACACtttttttctttttgagatggagtcgtgctctgtcacccaggctggagtgtgatcctggctcactgcaacctccacctccctggttcaaacaattctcctgactcagcctcccgagta
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585588 226 - 106955855 -------tatatgtgtgtatatatatatacacatatataaataaatgtatgtatatatataaatgtatatatatatgtgcgtatatatataaat------gtgtgtatatatatataCACtttttttttttttttgagatggagctgtgctctgtcacccaggctggagtgtgatcctggctcactgcaacctccacctccttggttcaaacaattctcctgactcagcctcccgagta
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47016508 184 +  51301725 -------tacgtgtgtatgtgtgtatat----------------------------------gtgtgtgtgtgtgtgtgtgtgtat--------------atatatatatatatatatatattttttttttttttgagacggagcctcgctctgtcacccaggctggagtgtgatcttggctcactgcaacctccacctctctggttcaaccaattctccccactcagcctcctgagta
i papAnu2.chr19             C 0 I 135
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45302229 1028 +  49145316 T
e chlSab2.chr6               46729579 323 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59877645 1256 +  64156825 I

a score=780.000000
s hg38.chr19_GL949751v2_alt     17344 2 +   1002683 gt
s panTro4.chr19              58954177 2 +  63644993 gt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585814 2 - 106955855 gt
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47016827 2 +  51301725 gc
i papAnu2.chr19             I 135 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45302229 1028 +  49145316 T
e chlSab2.chr6               46729579 323 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59877645 1256 +  64156825 I

a score=459091.000000
s hg38.chr19_GL949751v2_alt     17346 408 +   1002683 tgggattacaggcgtgagccaccacatctgtctGTGTAATCACTGTCTGAAATCCACTGAT-GGGGTGAGTAGAAAAGCTAAGAGAAGCCAGACAGATGGCCTGGCTTCCAAGCCTGGAT-CTCCCACCTTGGAGCTGGAACTTCCTTGGAGCTGGacatttcgaccaatagactttgagtaaagcagatgacccactgtcataggggtgggcctcatccaatcagttgaagactttaagactttaagagaaaagactgaggtcccccaaggtggaaggaattctgcctccagactcaagctgcaatatcaagtctcccctggatcccctgcctgcctgccctgcagatttcagacttgccagctccccacaatcacgtgaaccaatccattaaaatcaatctctctctc
s panTro4.chr19              58954179 409 +  63644993 tgggattacaggcatgagccaccacatctgtctGTGTAATCACTGTCTGAAATCCAATGATAGGGGTGAGCAGAAAAGCTAAGAGAAGCCAGACAGATGGCCTGGCTTCCAAGCCTGGAT-CTCCCACCTTGGAGCTGGAACTTCCTCAGAGCTGGacatttcgaccaatagactttgagtaaagcagatgacccactgtcacaggggtgggcctcatccaatcagttgaagactttaagactttaagagaaaagactgaggtcccccaaggtggaaggaattctgcctccagactcaagctgcaatatcaagtctcccctggatcccctgcctgcctgccctgcagatttcagacttgccagctccccacaatcacgtgaaccaatccattaaaatcaatctctctctc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102585816 403 - 106955855 tgggattacaggcgtgagccaccacgtctgtctGTGTAATCAGTGTCTGAAATCCACTGATAGGGGTGAGCAGAAAAGCTTAGAGAAGCCAGACAGATGGCCTGGCTTCCAAGTCTGGAT-CTCCTGCCTCGGAA-TGGAACTTCCTTGGAGCTGGacgtttggaccaatagactttgagtaaagcagatgacctactgtcatacgggtgggcctcatcctatcagttgaaggctttaagactttaagagaaaagactgaggtcccccaaggtggaaggaattctgcctccagactcaagctgcaatatcaagtctcccctggatctcctgcccgcctgccctgcagatttcagacttgccagccccccacaatcacgtgaaccaatccctta-----aatctctctctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59878901 380 +  64156825 tgggattacaggtgtgagccaccacgtctgtccGTGTAATCACTGTTTGAAATGCACTGATAGGGGTGAGCAGAACTGCTAAGAGGAGCCAGACAGACAGCCTGGCTTCCAAGCCTGGAT-CTCCCGCCTTGGAG-----------------CTGGacatttcaaccaatagactttgagtaaagcagatgacacactgtcatatgggtgggcctcatccaatcagttgaaggctt--------taagagaaaagactgaggtaccccaaggtggaaggaattcggcctccagactgaggctgcaatatcaagtctcccctggatctcct----gcctgccttgcaggtttcagacttaccagcccccgacaatcacatgaaccaatccattaaaataaatatctctctc
i rheMac3.chr19             I 1256 I 436
s papAnu2.chr19              47016829 374 +  51301725 tgggattacaggtgtgagccaccacgtctgtcCGTGTAATCACTGTCTGAAATGCACTGATAGGGGTGAGCAGAAATGCTAAGAGGAGC----CAGACAGCTTGGCTTCCAAGCCTGGAT-CTCCCACCTGGGAG-----------------CTGGACATTTCAACCaatagactttgagtaaagcagatgacccACTGTCatatgggtgggcctcatccaatcagttgaaggctt----------aGAGAAAAGACTGAGGTACCCCAAGGTGGAAGGAATTGGGCCTCCAGACTCAAGCTGCAGTATCAAGTCTCCCTTGGATCTCCT----GCCTGCCCTGCAGATTTCAGACTTACCAGCCCCCGACAATCACATGAACCAATccattaaaataaatctctctctc
i papAnu2.chr19             C 0 I 66
s chlSab2.chr6               46729902 377 +  50890351 tgggattacaggtgtgagccaccacgtctgTCTGTGTAATCACTGTCTGAAATGCACTGATAGGGGTGAGCAGAAATGCTAAGAGGAGC----CAGACAGCCTGGCTTCCAAGCCTGGATCCTCCCGCCTTGGAG-----------------CTGGacatttcaaccaatagactttgagtaaagcagatgacccactgtcatatgggtgggcctcatccaatcagttgaaggctt--------taagagaaaagactgaggtaccccaaggtggaaggaattgggcctccagactcaagctgcaatatcaagtctcccttggatctcct----acctgccctgcagatttcagacttaccagcccctgacaatcacatgaaccaatccattaaaataaatctctctcta
i chlSab2.chr6              I 323 I 4
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45302229 1028 +  49145316 T
e macFas5.chr19              54882420 20327 +  59248254 M

a score=12058.000000
s hg38.chr19_GL949751v2_alt     17754 28 +   1002683 catatatgtatatacatgtatat----gttc-----t
s panTro4.chr19              58954588 33 +  63644993 catataTGTATATACATGTATAT----Gttctttttt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586219 27 - 106955855 catatatgtatctacatgtgtat----gttc------
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017269 37 +  51301725 tatacacacacacacatgtgtatgtgggtttttttgt
i papAnu2.chr19             I 66 C 0
s chlSab2.chr6               46730283 37 +  50890351 tatacacacacacacacgtgtatgtgggtttttttgt
i chlSab2.chr6              I 4 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45302229 1028 +  49145316 T
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=113125.000000
s hg38.chr19_GL949751v2_alt     17782 97 +   1002683 cttttttttttttgagacaaagtctcactcttatcgtccaggctggagtgcaatagt-gcaatcttggctcactgcaagctccgcctcccgggttcaa
s panTro4.chr19              58954621 97 +  63644993 tttttttttttttgagacaaagtctcactcttgtcgtccaggctggagtgcgatagt-gcaatctcggctcactgcaagctccgcctcccgggttcaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586246 97 - 106955855 tttttttttttttgagacaaagtctcactcttgtcatccaggctggagtgcaatagt-gcaatcttggctcactgcaagctccgcctcccgggttcaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017306 97 +  51301725 ttgtttgttttttgagacaaagtttcactcttgtcgtccaggctggagtgcaatagc-gcaatcttggctcgctgcaagctctgcctcctgggttcaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46730320 98 +  50890351 ttgtttgttttttgagacaaagtttcactcttgtcatccaggctggagtgcaatagctgcaatcttggctcgctgcaagctccgcctcctgggttcaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301201 97 +  49145316 Ctttctttcttttgagatggagtttcactcttgctgcccaggctggagtgcaatggc-gcgatcccagctcactgcagcctctgcctcctgcgttcaa
i calJac3.chr22             T 1028 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=105959.000000
s hg38.chr19_GL949751v2_alt     17879 135 +   1002683 gcaattctcctgccttagcctcctgagtagctgggattacaggtgcccaccatcacgcccggctaatttttgtatttttagtagagacggggtttcgccatgttggccacgctggtcttgaactactgacctcag
s nomLeu3.chr10             102586343 135 - 106955855 ggaattctcctgcctcagcttcctgagtaactgggattacaggcacccaccaccacgcccggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactactgacctcag
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017403 135 +  51301725 gcaattctcctgcctcagcctcctgagtagctgggattacaggtgcccaccaccacgcccgactgatttttgtatttttagtagagacggggtttcaccatgttgaccaggctggtcttgaactcctgacctcag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46730418 135 +  50890351 gcaattctcctgcctcagcctcctgagtagctgagattacaggtgcccaccaccacgcccgactgatttttgtatttttcgtagagacggggtttcgccatgttgaccaggctggtgttgaactcctgacctcag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301298 134 +  49145316 gtgattctcctgcctcagcctcccgagtagctgggatcacaagcacgcgccaccgtgcccagctaa-ttttgtattttcagtagagatggggtttctccatgttggccaggctggtcttgaactcccaaccccac
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I
e panTro4.chr19              58954718   0 +  63644993 C

a score=94146.000000
s hg38.chr19_GL949751v2_alt     18014 96 +   1002683 gcaatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagcttatatctatatgttctat-tggttctg-tttttc
s panTro4.chr19              58954718 96 +  63644993 gcaatccgcctgccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggcttatatctatatgttctat-tggttctg-tttttc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586478 92 - 106955855 gcaatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagcttatatctatatgttcta-----ttctg-tttttc
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017538 97 +  51301725 gtaatccacccacatcggcctcccaaagtgctaggattacaggcgtgagccaccacacccagtttatatatatatgttctat-tggttctgttttttc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46730553 97 +  50890351 gtaatccacccacgtcggcctcccaaagtgctaggattacaggtgtgaaccaccacacccagcttatatatatatgttctat-tggttctgttttttc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45301432 97 +  49145316 gtgatccacccacctcagccccccaaagtgctggagttacagacgtgagccactgtacccagccAGAACTTAGCCTTTCTGTCTGGTTATT-CCCTTC
i calJac3.chr22             C 0 I 53
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=42161.000000
s hg38.chr19_GL949751v2_alt     18110 55 +   1002683 tggaaaaccctggctaacacaGACATGATCTCAGCTCTTAACTTCAAACATATTT
s panTro4.chr19              58954814 55 +  63644993 tggaaaaccctggctaacacagacttgatCTCAGCTCTTAACTTCAAACATATTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586570 55 - 106955855 tggaaaaccctggctaacacaCACATGATCTCAGCTCTTGACTTCAAACGTGTTT
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017635 50 +  51301725 tGGAAAACCCTGGCTAATAcagacacgatctcagctct-----tcaaacacattt
i papAnu2.chr19             C 0 I 6
s chlSab2.chr6               46730650 55 +  50890351 tggaaaactctGGCTAACACAGACATGATCTCAGCTCTTAACCTCAAACACAttt
i chlSab2.chr6              C 0 I 28
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301529 53 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=7367.000000
s hg38.chr19_GL949751v2_alt     18165 17 +   1002683 CCTTTTTCTTTTTTTAA
s panTro4.chr19              58954869 17 +  63644993 CCTTTTTCTTTTTTTAA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586625 15 - 106955855 --TTTTTCTTTTTTTAA
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017691 17 +  51301725 cttttttttttttttta
i papAnu2.chr19             I 6 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301529 53 +  49145316 I
e chlSab2.chr6               46730705 28 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=6371.000000
s hg38.chr19_GL949751v2_alt     18182 11 +   1002683 AG---GAGAGAGAG
s panTro4.chr19              58954886 11 +  63644993 AG---GAGAGAGAG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586640 14 - 106955855 agagagagagagag
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017708 11 +  51301725 aa---gagacagag
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45301582 11 +  49145316 AA---GAGAGAGAA
i calJac3.chr22             I 53 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e chlSab2.chr6               46730705 28 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=50408.000000
s hg38.chr19_GL949751v2_alt     18193 125 +   1002683 AGATGTGAAAGGACGGGATGTGAAGATTATGGGGAGAGGGTGAGGGCAATggaggggagaggaggggaga----------ggagggAGGTCACA-----------GATGGGAGCTCAGGATGCCAATCCCAGATGTGCCAATgggt
s panTro4.chr19              58954897 135 +  63644993 AGACGTGAAAGGATGGGATGTGAAGACTATGGggagagggtgagggcaatggaggggagaggaggggagaagaggggagaggagggAGGTCACA-----------GATGGGAGCTCAGGATGCCAATCCCAGATGTGCCAATgggt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586654 136 - 106955855 agagGTGAAAGGATGGGATGTGAAGATTCTGGggagagggtgagggcaatggaggggagaagaggggaga----------ggagggaggtcacagaatgggctgggatgggagCTCAGGGTGCCAATCCCAGATGTGCCAATgggt
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45301593 122 +  49145316 ACACATGAAAGGACGGGATGTGAAGACTGGGGGGAGAGGGTGAGGGCTATGGAGGGGAGAGGAGGTCACA-------------GGCCGGGCAGG-----------AGTAGGGGCTTAGGGCACCAGTCCTGGATGTGCCAGTGGAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e chlSab2.chr6               46730705  28 +  50890351 I
e papAnu2.chr19              47017719   0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=3386.000000
s hg38.chr19_GL949751v2_alt     18318 4 +   1002683 tccc
s panTro4.chr19              58955032 4 +  63644993 tccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586790 4 - 106955855 tccc
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017719 4 +  51301725 tctc
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45301715 4 +  49145316 TCCC
i calJac3.chr22             C 0 I 2530
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e chlSab2.chr6               46730705 28 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=613.000000
s hg38.chr19_GL949751v2_alt     18322 2 +   1002683 at
s panTro4.chr19              58955036 2 +  63644993 ac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586794 2 - 106955855 at
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017723 2 +  51301725 ac
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301719 2530 +  49145316 I
e chlSab2.chr6               46730705 28 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879281 436 +  64156825 I

a score=301761.000000
s hg38.chr19_GL949751v2_alt     18324 234 +   1002683 tgttgcccaggctagagtgcagtggtgtgatcatactcgaattcctgggctcaagtggtcctcctcactcggcctcca-gggtagctgggagtacagaccaccacgcccagccaacttCAAACACACTTCAATGAGCTCGTTGATGCCAGGTAATGAACAGCAGTGACACGGGCATGGAAGGCGTTTAGAGTGGGGAGGGGTGGGGCTCTCTGAAGGAGACATGATTCCCCAAGA
s panTro4.chr19              58955038 234 +  63644993 tgttgcccaggctagagtgcagtggtgtgatcatactcgaattcctgggctcaagtggtcctcctcactcggcctcca-gggtagctgggagtacagaccaccacgcccagcCAACTTCAAACACACTTCAATGAGCTCATTGATGCCAGGTAATGAACAGCAGTGACACGGGCATGGAAGGCGTTTAGAGTGGGGAGGGGTAGGGCTCTCTGAAGGAGACATGATTCCCCAAGA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102586796 234 - 106955855 tgttgcccaggctggagtgcagtggtgcgatcatactcgaattcctgagctcgagtggtcctcctcactcggcctcca-gggtagctgggagtacagaccaccacgcccagcCAACTTCAAACACACTTCAAAGAGCTCGTTGATGCCAGGTAATGAACAGCAGTGACAAGGGCATGGAAGGCGTTTAGAGTGGGGAGGGGTGGGGCTCTCTGAAGGAGACATGATTCCCCAAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59879717 234 +  64156825 tgttgcccaggctggagtgcagtggtgcaatcatactcgaattcctgggctcaagtggtcctcctcactcggcctcca-gggtagctgggagtacagatcactgcgcccagcCAACTTCAAACACACTCCAATGAGCTCGTTGACGCCAGGTAACGAACAGCAGTGACATGGGCATGGAAGGCGTTTAGAGTGGGGAGGGGTGGGGCTCTCTGAAGGAGATATGATTCTCCGAGA
i rheMac3.chr19             I 436 C 0
s papAnu2.chr19              47017725 223 +  51301725 tcttgcccaggctggagtgcagtggtgcaatcatactcgaattcctgggctcaagcggtcctcctcaCTCGGCCTCCAggggtagctgggagtacagatcaccacgcccagccaacttcAAACACACTCCAATGAGCTCGTTGACACCAGGTAACGAACAGCAGTGACATGGGCATGGAAGGCGTTTagagtggggaggggtggggttcTCTGAAGGAGACAC------------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46730733 234 +  50890351 tgttgcccaggctggagtgcagtggtgcaatcatactcgaattcctggcctcaagcggtcctcctcactcggcctcca-gggtagctgggagtacagatcaccacgcccagcCAACTTCAAACACACTCCAATGAGCTCGTTGACGCCAGGTAACGAACAGCAGTGATGTGGGCATGGAAGGCGTTTAGAGTGGGGAAGGGTGGGGCTCTCTGAAGGAGACATGATTCTCCGAGA
i chlSab2.chr6              I 28 I 41
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301719 2530 +  49145316 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=1746.000000
s hg38.chr19_GL949751v2_alt     18558 3 +   1002683 CAC
s panTro4.chr19              58955272 3 +  63644993 CAC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102587030 3 - 106955855 CAC
i nomLeu3.chr10             C 0 I 4
s rheMac3.chr19              59879951 3 +  64156825 CAC
i rheMac3.chr19             C 0 I 119
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301719 2530 +  49145316 I
e chlSab2.chr6               46730967 41 +  50890351 I
e papAnu2.chr19              47017948 0 +  51301725 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=5373.000000
s hg38.chr19_GL949751v2_alt     18561 13 +   1002683 AGAACAAGGGATC
s panTro4.chr19              58955275 13 +  63644993 AGAACAAGGGTTC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102587037 13 - 106955855 ACGACAAGGGATC
i nomLeu3.chr10             I 4 C 0
s papAnu2.chr19              47017948 13 +  51301725 AGAACGAGGGATC
i papAnu2.chr19             C 0 I 22
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301719 2530 +  49145316 I
e chlSab2.chr6               46730967 41 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=15005.000000
s hg38.chr19_GL949751v2_alt     18574 55 +   1002683 AGCTGGGAGAATTCAGGGAGGATTCCTAATAAGAACAGGGTTAGAGCAGGGTAGA
s panTro4.chr19              58955288 55 +  63644993 AGCTGGGAGAATTCAGGGAGGATTCCTAATAAGAACAGGGTTAGACCAGGGTAGA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102587050 55 - 106955855 AGCTGGGAGAATTCAGGGAGGATTCCTAATAAGAACAGAGTTAGACCAGGGTAGA
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55819239 2486 +  60714840 M
e calJac3.chr22              45301719 2530 +  49145316 I
e chlSab2.chr6               46730967 41 +  50890351 I
e papAnu2.chr19              47017961 22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=7272.000000
s hg38.chr19_GL949751v2_alt     18629 14 +   1002683 AAAGAATGACCAGT
s panTro4.chr19              58955343 14 +  63644993 AAAGAATGACCAGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55821738 14 +  60714840 AAAGAATGTCCAGT
i ponAbe2.chr19             M 2486 C 0
s nomLeu3.chr10             102587105 14 - 106955855 AAAGAATGACCAGT
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e calJac3.chr22              45301719 2530 +  49145316 I
e chlSab2.chr6               46730967 41 +  50890351 I
e papAnu2.chr19              47017961 22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=639731.000000
s hg38.chr19_GL949751v2_alt     18643 895 +   1002683 ggccgggcac-ggtggctcacgcctgtaatcctggcactttgggagagtgaagtaggtggatcacttgaggtctggagttcgagaccagcctggccaacatggtgaaaccctgtctctactgaaaatataaaaaataagctgggcatggtggcgcacgcctgtagtcccagctactcaggaggctgagagaagagaattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcatcactgcatcatacactcaactgaccaagactccaactcaaaaaaGCATCCCTCTCAGGAGATAAAATTTCTACCAATTaaaaaacaaaaac-------------------aaaacaaaacaaaaaaaacTAGTTCTTGAGCAATATTGCCATGCAAGTCtacatcatagcgttttaaagtcttaacaacaaccctgcaaggtagtacaattatttccctcccactggtgaagGGCATGCATTCCCGTGTGACTCCTGGGATTACAGCAAGGGTTGTGTCCAAAGCTCACAGCGTTGAGGAAGAGAGAGCAACCTGTTACTAAAGCTAGGCGACAGAGTCCATGCAGTTCCCCCCCGTTT--------------TTTGTTTTTCTTGGCACTTTAGATTCAAGAAACACAAGTCGTGAGACTTTAAGGAGTAAGTAGCAGAAACGTGATTAAGGA-AAAAAGTTGAGCAACTATAGAAGTGAGGCCCCAGAAAGGGGCTTCACCAAGACCCCCGCTATCTTTGTTAGTGTGCTTTGAGTCTGAGAATTTTTCCTAGGTGTGCAATGATCTGTGGTCACATTACAGAGCCAAGTCTGAGATGCTTCACACGCCTGGTCCTCTGCACCAACAGAGGGTCTCCCATCCAGACGCTTCCCCTACTTGGTTC----GCTATGTT-----TGCATTGGCATTt
s panTro4.chr19              58955357 893 +  63644993 ggccgggcgt-ggtggctcacgcctgtaatcctggcactttgggagagtgaagtaggtggatcacttgaggtctggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatataaaaaataagctgggcatggtggcgcatgcctgtagtcccagctactcaggaggctgagagaagagaattgcttgaacctgggagggggaggttgcagtgagccgagatcgcatcactgcatcatacactcgactgaccaagactccaactcaaaaaaGCATCCCTCTCAGGAGATAAAATTTCTACCAATTAAaaaacaaaaac-------------------aaaacaaaacaaaacaaaCTAGTTCTTGAGCAATATTGCCATGCAAGTCtacatcatagcgttttaaagtctta-caacaaccctgcaaggtagtacaattatttccctcccactggtgaagGGCATGCATTCCCGTGTGACTCCTGGGATTACAACAAGGGTTGTGTCCAAAGCTCACAGCGTTGAGGAAGAGAGAGCAACCTGTTACTAAAGCTAGGCGACAGAGTCCATGCAGTTCCCCCC-GTTT--------------TTTGTTATTCTTGGCACTTTAGATTCAAGAAACACAAGTCGTGAGACTTTAAGGAGTAAGCAGCAGAAACGTGATTAAGGA-AAAAAGTTGAGCAACTATAGAAGTGAGGCCCCAGAGAGGGGCTTCACCAAGACCCCCGCTATCTTTGTTAGTGTGCTTTGAGTCTGAGAATTTTTCCTAGGTGTGCAATGATCTGTGGTCACATTACAGAGCCAAGTCTGAGATGCTTTACACACCTGGTCCTCTGCACCAACAGAGGGTCTCCCATCCAGACGCTTCCCCTACTTGGTTC----GCTATGTT-----TGCGTTGGCATTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55821752 913 +  60714840 ggccgggcgcgggtggctcacgcctgtaatcctggcactttgggagagtgaagtaggtggatcacttgaggtctggagttcaagagcagcctggccaacatggtaaaaccctgtctctactaaaaatataaaaaataagctgggcatggtggtgcacgcctgtagtcccagctactcaggaggctgagagaagagaattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcatcattgcatcatacactcgacagactgagactccaactcaaaaaaGCATCCCTCTCAGGAGATAAAATTTCTACCAATTAaaagacaaaaacaaaaaattaaacaaa----aaaacaaaacaaaa-aAactagttcttgagcaatactgccaggcaagtctacatcacagcattttaaattctta-caacaaccctgcaaggtagtacaattatttccctcccactggtgaagaGCATGCATTCCCGTGTGACTCCTGGGATTACAACAAGGGTTGCGTCCAAAGCTCACAGCGTTGAGGAAGAGCGAGCAACCTGTTACTAAAGCTAGGTGACAGAGTCCATGCAGTTTCCCCC-GTTT--------------TTTGTTTTTCTTGGCACTTCAGAGTCAAGAAACACAAGTCGTGAGACTTTAAGGAGTAAGTAGCAGAAACATGATTAAGGA-AAAAAGTGGAGCCACTAAAGAAGTGAAGCCCCTCTCTGGGGCTTCACCAAGACCCCCACTATCTTTATTAGTGTGCTTTGAGTCTGAGAATTTTTCCTAGGTGTGCAATGCTCTGTAGTCACATTACAGAGCCAAGTCTGCGATGCTTCACACGCCTGGTCCTCTGCACCAACAGAAGGTCTCCCATCCAGACCCTTCCCCTACTTGGTTC----ACTGAGAGAGAAATGCGTCGGCATTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102587119 855 - 106955855 ggccgggcgc-ggtggctcatgcctgtagtcctggcactttgggagagtgaagtaggtggatcacttgaggtctggagttcgagaccagcctggccaacatggtgaaaccctgtctctacgaaaaatataaaaaataagctgggcatggtggcacacgcctgtagtcccagctactcaggaggctgagagaagagaattgcttgaacctgggaggcggaggttgcagtgagccgagattgcaccactgcatcatacactcgactgaccgagaccccaactcaaaaaaGCATCCCTCTCAGGAGATAAAATTTCTACCAATTaaaaaacaaaaacaaaaaatcaaacaaaaaacaaaacaaaacaaaa-aaaCTAGTTCTTGAGCAATATTGCCATGCAAGTCtacatcagagcgttttaaattctta-caacaaccctgcaaggtagtacaattatttccctcccactggtgaagGGCATGCATTCCCGTGTGACTCCTGGGATTACAACAAGCGTTGCGTGCAAAGCTCACAGCGTTGAGGAAGAGCGAGCAACCTGGTACTAAAGCTAGGCGACAGAGTCCATGCAGTTCCCCCA-GTTT--------------TTTGTTCTTCTTGGCACTTTAGAGTCAAGAAACACAAGTCATGAGACTTTAAGGAGTAAGTAGCAGAAACATGATT-------------------------------------------------------------CCGCTGTCTTTGTTAGTGTGCTTTGAGTCTGAGAATTTTTCCTAGGTGTGCAATGATCTGTGGTCGCATTACAGAGCCAAGTCTGAGATGCTTCACATGCCTGGTCCTCTGCACCAACAGAGGGTCTCCCGTCCAGACCCTTCACCTACTTGGTTCACTGACTATGTT-----TGCGTTGGCATTT
i nomLeu3.chr10             C 0 I 318
s calJac3.chr22              45304249 872 +  49145316 ggctgggcgc-ggtggctcacacttgtaatcccagcactttgggaggccgaggcgggtggat--cctgaggtcaacagatcgagaccatcctggtcaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggtggcgcgggcctgtaatcccagctactcgggaggctgaagcaggagaattgcctgaacccaggaggcggaggttgcggtgagccgagatcgcaccattgc----------------------actccagcctgggtaa----------caagagtgaaactgtgtctcaaaagcaaagc-aaaac-------------------aaaacaaaacaaaaaaaaCGAGTGCTTGAGCAATATCGCCATGTAAGTCTACGTCGtagcgtgttaaattctta-caacaaccctgcaaggtagcaccattattcccatcccactggtgaagGGCACACGTTCCCATGTAACTCCCGGGATTATGACAAGGGTTCCTTCCAAAGCTCACAGCGTTGAGGGAGAGTGAGCAGCCTGTTAGTAAGTCTGGGTGACGGAGTCCATGCAATTCCCCtg-tttttgtttttgtttttgtttttttttCTTGGCACGTGAGGTTCAGGAAACACACGTCATGAGACTTTAAGGAGTAAGTAGCAGAAACATGATCGAACACAAAAAGGTGAGCAACTTCGGAAGTGAAGCCCCAGAGCGGGGCCTCACCAAGACCCTCACTGTGTTTGTTAGTGTGCTTGGAGGCTGAGAATGCTTCCTGGGTGTGCGATGACCTGTGGCCACATCGCAGAGCCGCGTCTGAGATGC-TCACACGCCTGGTCCTCTGCACCAACAGA--GCTTCCCATCCA-ACCCTTC-CCTACTTGGTTCCCTCGCTGTGCT-----TGCGTCGGCATTT
i calJac3.chr22             I 2530 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e chlSab2.chr6               46730967  41 +  50890351 I
e papAnu2.chr19              47017961  22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=156268.000000
s hg38.chr19_GL949751v2_alt     19538 259 +   1002683 ctacatatctatatatagagaattacctatctaatttatctatctcgctaatctatctaccatctgtctaggtatctattatctatctacctatctatctttatctgtctctgtacctacttacctatcatctatccaatctatc-cgtcctatctaattatgatttatctatctacctacttgcctatcacctatccaatctatctatcctatcatatgtaattaactatctgtctgtcta---atttttctatcttgttaa
s panTro4.chr19              58956250 259 +  63644993 CTACATATCTATATATAGAGAATTACctatctaatttatctatctcgctaatctatctaccatctatctaggtatctattatctatctacctatctatctttatctgtctctgtacctacttacctatcatctatccaatctatc-cgtcctatctaattatgacttatctatctacctacttgcctatcacctatccaatctatctatcCTATCATATGTAATTAACTATCTGTCTGTCTA---ATTTTTCTATCTTGTTAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55822665 258 +  60714840 CTACATGTCTATATAGAGTGAATTACCTATCTAATTTATCTATCTCGCTAATCTATCTACCAtctatctaggtatctattatctatctacctatcta----tatctgtttctctacttacttacctatcatctgtccaatctatc-cgtcctatctaattatcacttatctatctacctagttgcctatcacctatccgatctatctatcctatcatatgtaattaactatctatctgtctgtctaATTTTCTATCTTGTTAA
i ponAbe2.chr19             C 0 I 359
s nomLeu3.chr10             102588292 242 - 106955855 CTACATGTCTATATATAGAGAATtacctatctaatttatctatctcgctaatctatctaccatctatctaggtatctattatctatctacctatctatctttatctgtttctctacctacttacctatcatctatccaatctatc-tgtcctatctaattatcacttatctatctacctacttgcctatcacctatccaatctatcc---------tatgtaattaa--------ctgtcta---atttttctatcttgttaa
i nomLeu3.chr10             I 318 C 0
s calJac3.chr22              45305121 181 +  49145316 CTACAGACCTATGCAGGGAGAAGTACCTGCCTAATTTATCTGTCTCACTCAtctgtc----------------------catctgtctgcctagctatctttatctgtctctctacctacttacctatcatctatccaatctatcttgtcacatctaattatc---tatctatctttcta------------------------------------------------------tctgtgta---attttcctgtcttgctaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e chlSab2.chr6               46730967  41 +  50890351 I
e papAnu2.chr19              47017961  22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=24832.000000
s hg38.chr19_GL949751v2_alt     19797 58 +   1002683 tctatcacttatctaggcatctatgtatctatctttatctgtctatccacctgcttac
s panTro4.chr19              58956509 58 +  63644993 TCTATCACTTATCTAGGCAtctatgtatctatctttatctgtctatccacctgcttac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102588534 58 - 106955855 tctatcgcttatctaggcatctatgtatctatctttatctgtctattcacctacttac
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45305302 48 +  49145316 tctatcacctatctagacatcta----------tctatctgtctatccacctaattac
i calJac3.chr22             C 0 I 1392
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55822923 359 +  60714840 I
e chlSab2.chr6               46730967 41 +  50890351 I
e papAnu2.chr19              47017961 22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=69663.000000
s hg38.chr19_GL949751v2_alt     19855 195 +   1002683 ctgctgtctgtctaatctatccatcctatcatatctaattatc-----acttatctatc-------taccgacttacctatcatctagttaccaaatctatcatctatctaatgtatctatcaatcataaccagttatctatcatct----atcatctatcatctgtatgtatctgtctattcacctactattatctatttaatctattct--
s panTro4.chr19              58956567 199 +  63644993 ctgttgtctatctaatctatccatcctatcatatctaattatc-----acttatctatc-------taccgacttacctatcatctagctaccaaatctatcatctatctaatgtatctatcaatcataaccagttatctatcatctctctatcatctatcatctgtatgtatctgtctattcacctactattatctatttaatctactct--
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102588592 199 - 106955855 ctgtcgtctgtctaatctatccatcctatcatatctaattatc-----acttatctatc-------tactgacttacctatcatctagctaccaaatctatcagctatctaatgtatctgtcaatcataactagttatctatcatctctctatcatctatcatctgtatgtatctgtctattcacctactataatctatttaatctatcct--
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45306742 193 +  49145316 ctatcatctatctaatgtatctatcc-attgtacctaattatccaattgatcatctatcttatctatatcaagttatctatcatctatct----aatctatcatctatctaatgtatctatcCATTGTACCTAATTATCCA--AGTG----ATCatctatc--ttatctatatcaagttat-------ctatcatctatctaatctatcatct
i calJac3.chr22             I 1392 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e ponAbe2.chr19              55822923 359 +  60714840 I
e chlSab2.chr6               46730967  41 +  50890351 I
e papAnu2.chr19              47017961  22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=124117.000000
s hg38.chr19_GL949751v2_alt     20050 220 +   1002683 atctagt-tatctatctatctatccacc----------------tacttatctaat---ttttctatcttg-------caa---ctc-tatcacctatctaggtatcta-----tgtatctatctgtgtatctgtatatctatctatctatctagctagctttatctagctacctagttacctatcatctatctatctaatctatcatctatctaatgtatctatcaatcatatctaattatctgtctatctaatc
s panTro4.chr19              58956766 220 +  63644993 atctagt-tatctatctatctatctacc----------------tacttatctaat---ttttctatcttg-------caa---ctc-tatcacctatctaggtatcta-----tgtatctatccgtgtatctgtatatctatctatctatctagctagctttatctagctacctagttacctatcatctatctatctaatctatcatctatctaatgtatctatcaatcatatctaattatctgtctatctaatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55823282 213 +  60714840 atctagt-tatctatctatgtatctacc--------------------tatctaat---ttttctatctTG-------CAA---CTCTTATCACctatctaggtatcta-----tgtatctatccatgtatctgtatatctagctagctagctagctagcttgattgagctacctagttacctatc----atctatctaatctatcatctatctaatgtatctaccaatcatatctaattatctgtctatctaatc
i ponAbe2.chr19             I 359 C 0
s nomLeu3.chr10             102588791 227 - 106955855 atctagt-tatctatctatctatctatctatctatctatctatctacctatctaat---ttttctattttg-------caa---ctc-tatcacctatctaggtatcta-----tgtatctatccatgtatctgtatgt----ctatctatctagctagctttatctagctacctacttacctatc----atctatataatctatcatctatctaatgtatctatcaatcatatctaattttctatcta-atcatc
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45306935 223 +  49145316 atctaatgtatctatcaat---tgtacc----------------taattatccaattgatcatctatcttatctatatcaagttatc-tatcatctatcta---atctatcatctgtatctaccta-----ctgaggat-catctatctaatctatcatctgtatctatctacctactcacctatcatctgtctacctaatctatcatctatctaatgtatctatccattgtacctaattatccaattg----atc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e chlSab2.chr6               46730967  41 +  50890351 I
e papAnu2.chr19              47017961  22 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=169802.000000
s hg38.chr19_GL949751v2_alt     20270 146 +   1002683 atctatcttatctattatatctagttatctatcatctagctag--------------------------------ctagctaatctatctg-----------tatctatctacctacttacctatcgtctatttatctatctaatct---atcatatctagttatctatctacttact-------tatcta----acctgttg
s panTro4.chr19              58956986 150 +  63644993 atctatcttatctattatatctagttacctatcatctagctag--------------------------------ctagctaatctatctg-----------tatctatctacctacttacctatcatctatttatctatctaatct---atcatatctagttatctatctacttact-------tatctatctaacctgttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55823495 138 +  60714840 atctatcttttctattatctctagttatctatcatctagctag--------------------------------ctagctaatctatctg---------------gatctacctacttacctatcatctatttatctatctaatct---atcatatctagttatctatc----tatc-------tatcta----acctattg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102589018 146 - 106955855 atctaccttatctattatatctagttatctatcatctagctag--------------------------------ctagctaatctatctg-----------tatctatctacctacttacctatcatctatt----tatctaatct---atcatatccagttatctatctagttact-------tatctatctaacctattg
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47017983 128 +  51301725 atctattttatctactatatctagttatctatcatctagctag--------------------------------ctagctaatc-atctg-----------tatctatctacctacttacctattatccatttatctatctaacct---atcatatctagttatctatctattg----------------------------
i papAnu2.chr19             I 22 C 0
s chlSab2.chr6               46731008 124 +  50890351 atctattttatctactatatctagttatctatcatctagctag--------------------------------ctagctaatc-atctg-----------tatctatctacctacttacctattatccatttatctatctaacct---atcatatctagttatctattg--------------------------------
i chlSab2.chr6              I 41 C 0
s calJac3.chr22              45307158 196 +  49145316 atctatcttatc---tatatcaagttatctatcatctatctaatctatcatctgtatctacctaCTGACGATCATCTGTCTAATCTATCTGCCAtatctagttatctgtctacctacttgcctattacctatt----tatctagtctgtcatcatatgtagttatgtatctacctaccgtctatgtctctatctaatctattg
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59879954 119 +  64156825 I

a score=627254.000000
s hg38.chr19_GL949751v2_alt     20416 336 +   1002683 tatctagttatctatctacctacttacctatcatctgtctatctatctaatctgtccatcg-tatctagctacttatctacctatcatcta--tgtatctatctaatctatcatatctagttatctatttatctgcctacttgcctat----tatctatcacatctaattatctatctat-cCCCCTCCCTGAAATAAGGTTCTTTCTGAGCTGATCATCAGggagcagcaaaaggagtggggagtttgaaacaagacatatttgagttctagtactgggtctcctacctcctgactttgtaaatgttcccttccctttctggaatacgttattttttggttaa
s panTro4.chr19              58957136 336 +  63644993 tatctagttatctatctacctacttacctatcatctgtctatctatctaatctgtccatca-tatctagctacttatctacctatcatcta--tgtatctatctaatctatcatatctagttatctatttatcttcctatttacctat----tatctatcacatctaattatctatctat-cCCCCTCCCTGAAATAAGGTTCTTTCTGAGCTGATCATCAGggagcagcaaaaggagtggggagtttgaaacaagacatacttgagttctagtactgggtctcctacctcctgactttgtaaatgttcccttccctttctggaatacgttattttttggttaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55823633 332 +  60714840 tatctagttatctatctacctacttacctatca----tctatctatctaatctgtctatca-tatctagctactgatctacctatcatcta--tgtatctatctaatctatcatatctagttatctatttatctacctacttacctat----tatctatcatatttaattatctatctat-cCCCCTCCCTGAAATAAGGTTCTTTCTGAGCTGATCATCAGAGAgcagcaaaaggagtggagagtttgaaacaagacatacttgagttctagtactgggtctcctacctcccgactttgtaaatgttcccttccctttctggaatacgttattttttggttaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102589164 280 - 106955855 tatctagttatctatctacctgc-----------------------------------------------------ttaacctatcatc------tgtctatctaatctatcatatctagttatctatttatctacctacttacctat----tatctatcatatctaattatctatctat-cCCCCTCCCTGAAATAAGGTTCTTTCTGAGCTGATCATCAGggagcagcaaaaggagtggagagtttgaaacaagacatacttgagttctagtactgggtctcctacctcctgactttgtgaatgttcccttccctttctggaatacgttattttttggttaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59880073 332 +  64156825 tatctatttatctatctacctacttacctatcacctgtctc----tctaatccatctatca-tatctagctacctac----ctatcatcta--tgtatctatcttatctatcatgtctagttgtctatgtatctacctacttacctatcatctgtctatcatatctaattatctatttat-cCCCCTTCCTGAAATAAGGCTCTTTCTGAGCTGATCATCAGGGAGCAGCAAAAGGAGTGGAGAGTTTGAAACAAGACAAACTTGAGTTCTAGTAGTAGGTCTCCCATCTCCTGACTTTGTAAATGTTCCCTTCCCTTTCTGGAATACATTATTTTTTGGTTAA
i rheMac3.chr19             I 119 I 417
s papAnu2.chr19              47018111 340 +  51301725 tatctaattatctatctacctacttaactatcatctgtctctctatctaatccgtctatcattatctagctacctacctagctatcatcta---gtatctatcttatctatcatgtctagttatctatttatctacctacttacctatcatctgtctatcatatctaattatctatttat-ctCCCTTCCTGAAATAAGGCTCTTTCTGAGCTGATCATCAGGGAGCAGCAAAAGGAGTGGAGAGTTTGAAACAAGACATACTTGAGTTCTAGTAGTAGGTCTCCCATCTCCCGACTTTGTAAATGTTCCCTTCCCTTTCTGGAATACATTATTTTTTGGTTAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46731132 324 +  50890351 tatctaat----tatctacctacttaactatcatctgtcta----tctaa----tctatca-tatctagctacctac----ctatcatcta---gtatctatcttatctatcatgtctagttatctatgtatctacctacttacctatcatctgtctatcatatctaattatctatttatcCCCCCTTCCTGAAATAAGGCTCTTTCTGAGCTGCTCATCAGGGAGCAGCAAAAGGAGTGGAGAGTTTGAAACAAGACATACTTGAGTTCTAGTACTAGGTCTCCCATCTCCCATCTTTGTAAATGTTCCCTTCCCTTTCTGGAATACATTATTTTTTGGTTAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45307354 305 +  49145316 tatcta---------ctacctgcttctct--------cctatttatctaa----tctatca-tatctagctatctac----ctaccatctatctacatctatctaATGTATCATATCGAGTTACCTA--------CCTACTCACCTGTCATCTGTCTATCATATCTAAGTATCTGT-----CTCCCTCCCTGAAATAAGGCTCTGTCTGAGCAGACCATCAGCcagcggcaaaaggagtggattctttgtaacaacgcacgcttgggttctagtactgagtctcccacctgccgactctgtaaatgttcccttccctttctggaatacgttattctttggttaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=10192.000000
s hg38.chr19_GL949751v2_alt     20752 4 +   1002683 atat
s panTro4.chr19              58957472 4 +  63644993 atat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55823965 4 +  60714840 atat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102589444 4 - 106955855 atat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59880822 4 +  64156825 ATAT
i rheMac3.chr19             I 417 C 0
s papAnu2.chr19              47018451 4 +  51301725 ATAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46731456 4 +  50890351 ATAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45307659 4 +  49145316 atat
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19467539 817 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=1354260.000000
s hg38.chr19_GL949751v2_alt     20756 514 +   1002683 aagga-gggggcagagagctaataatatctaacttgaagagttaggtaatgatgaaaaatcctggctttaaagcgctcagtctagaaactgactcattgtGTCGGATAATGGGATTGTAGGTATAATGATGATTTTTTTTCACCCAATATTCCACCTACACCCATCTCTCTCTGTAATAGATTCTGTCAATGTTCCTCAACCCATGTTCCCCAGATCCCTTTCCCATTTTTATGCATTCTAGATCGTGGCTTCTTTCCCTTTCCAAAGTGAACATTTGTATCTCTTCTTTGGGGGACTGCCTGGGAGAACTCCAAATGCCTTGGAATTTA--CATGCCCGGGACAAACTGCCAC--TGACGGCTGT--------------GGGGACCCCAGCTCC-CTAGCCTCT---------GGTCTTCGACCTTCTCTGTCTCCACTGC--TTTCTGCAGGATGGAGCCAAAGATACCATCTGAGGGACACAGATATCCCACACTTGTTTAATCTATTTTCCTCCCAGCCCTTCTTCCCC---ACT-CCCTAAAAT
s panTro4.chr19              58957476 514 +  63644993 aagga-gggggcagagagctaataatatctaacttgaagagttaggtaatgatgaaaaatcctggctttaaagcactcagtctagaaactgactcattgtGTAGGATAATGGGATTGTAGATATAATGATGATTTTTTTTCACCCAATATTCCACCCACACCCATCTCTCTCTGTAACAGATTCTGTCAATGTTCCTCAACCCATGTTCCCCAGATCCCTTTCCCATTTTTATGCATTCTAGATCGTGGCTTCTTTCCCTTTCCAAAGTGAACATTTGTATCTCTTCTTTGGGGGACTGCCTGGGAGAACTCCAAACGCCTTGGAATTTA--CATGCCCGGGGCAAACTGCCAC--TGACTGCTGT--------------GAAGACCCCAGCTCC-CTAGCCTCC---------AGTCTTTGACCTTCTCTGTCTCCACTGC--TTTCTGCAGGATTGAGCCAAAGATACCATCTGAGGGACACAGATATCCCACACTCGTTTAATCTATTTTCCTCCCAGCCCTTCTTCCCC---ACT-CCCTAAAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55823969 515 +  60714840 aaaga-gggggcagagagctaataatatctaacttgaagagttaggtaatgatgaaaaatcctggctttaaagcactcagtctagaaactgactcattgtGTAGGATAATGGGATTGTAGGTATAATGATGATTTTTTTTCACCCAATATTCCACCCACACCCATCTCTCTCTGTAACAGATTCTGTCAATGTTCCTCAACCCATGTTCCCCAGATCCCTTTCCCATTTTTATGCATTCTAGATCGTGGCTTCTTTCCCTTTCCAAAGTGAACATTTGTATCTCTTCTTTGGGGGACTGCCTGGGAGTGCTCCAAATGCCTTTGAATTTA--CATGCCCGGGGCAAACTGCCAC--TGACTGCTGT--------------GAAGACCCCAGCTCC-CTAGCCTCC---------GGTCTTTGACCTTCTCTGTCTCCACTGC-TTTTCTGCAGGATTGAGCCAAAGATACCATCTGAGGGACACAGATATCCCACCCTTGTTTAATCTCTTTTCCTCCCAGCCCTTCTTCCCC---ACT-CCCTAAAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102589448 514 - 106955855 aagga-gggggcagagagctaataatatctaacttgaagagttaggtaatgatgaaaaatcctggctttaaagcactcagtctagaaactgactcattgtGTAGGATAATGGGATTGTAGGTATAATGATGA-TTTTTTTCACCCAATATTCCACCCACACCCATCTCTCTCTGTAACAGATTCTGTCAATGTTCCTCAACCTATGTTCCCCAGATCCCTTTCCCACTTTTATGCATTCTAGATCGTGGCTTCTTTCCCTTTCCAAAGTGAACATTTGTATCTCTTCTTTGGGGGACTGCCTGGGAGAGCTCCAAATGCCTTGGAATTTA--CATGCCCAGGGCAAACTGCCAC--TGACTGCTGT--------------GAAGACCCCAGCTCC-ATAGCCTCT---------GGTCTTTGACCTTCTGTGTCTCCACTGC-TTTTCTGCAGGATTGAGCCAAAGATACCATCTGAGGGACACGGATATCCCACCCTTGTTTAATCTCTTTTCCTCCCAGCCCTTCTTCCCC---ACT-CCCTAAAAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59880826 511 +  64156825 AAGGA-GGGGGCAGAGAGCCAATAATACCTAACTTGAAGAGTTAGGTAATGATGAAAAATCCTGGCTTTAAAGCACTCAGTCTAGAAACTGACTCATTGTGTAGGATAATGGGATTGTAGGTATAATGATGATTTTTTTTCACCCAATATTCCACCCACGTCCA----TCTCTGTAACAGATTCTGTCAATGTTCCTCAACCCATGTTCCCCAGATCCCTTTCCCATTTTTATGCATTCTAGATTGTGGCTTCTTTCCCTTTCCAAAGTGAACATTTGCATCTCTTCTTTGGGGGACTGCCGGGGAGAGCTCCAAATGCCTTGGAATTTA--CATGCCCGGAACAAACTGCCAC--TGACTGCTGT--------------GAAGACCCCAGCTCC-CTAGCCTCT---------GGTGTTTGACCTTCCCTGTCTCCGCTGC-TTTTCTGCAGGATTGAGCCAAAGATACCATCTGAGGGACACGGATATCCCACTCTTGTTTAATCTCTTTTCCTCCCGGCCCTTCTTCCCC---ACT-CCCTAAAAT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47018455 516 +  51301725 AAGGAGGGGGGCAGAGAGCCAATAATACCTAACTTGAAGAGTTAGGTAATGATGAAAAATCCTGGCTTTAAAGCACTCAGTCTAGAAACTGACTCATTGTGTAGGATAATGGGATTGTAGGtataatgatgattttttttcaccCAATATTCCACCCACGCCCATCTCTCTCTGTAACAGATTCTGTCAATGTTCCTCAACCCATGTTCCCCAGATCCCTTTCCCATTTTTATGCATTCTAGATTgtggcttctttccctttccaaAGTGAACATTTGCATCTCTTCTTTGGGGGACTGCCTGGGAGAGCTCCAAATGCCTTGGAATTTA--CATGCCCGGAACAAACTGCCAC--TGACTGCTGT--------------CAAAACCCCAGCTCC-CTAGCCTCC---------GGTCTTTGACCTTCCCTGTCTCCACTGC-TTTTCTGTAGGATTGAGCCAAAGATACCATCTGAGGGACACGGATATCCCACCCTTGTTTAATCTCTTTTCCTCCTGGCCCTTCTTCCCC---ACT-Ccctaaaat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46731460 516 +  50890351 AAGGA-GGGGGCAGAGAGCCAATAATACCTAACTTGAAGAGTTAGGTAATGATGAAAAATCCTGGCTTTAAAGCACTCAGTCTAGAAACTGACTCATTGTGTAGGATAATGGGATTGTAGGTATAATGATGATTTTTTTTCACCCAATATTCCACCCACACCCATCTCTCTCTGTAACAGATTCTGTCAGTGTTCCTCAACCCATGTTCCCCAGATCCCTTTCCCATTTTTATGCATTCTAGATTGTGGCTTCTTTCCCTTTCCAAAGTGAACATTTGCATCTCTTCTTTGGGGGACTGCCTGGGAGAGCTCCAAATGCCTTGGAATTTA--CATGCCCAGAACAAACTGCCAC--TGACTGCTGT--------------GAAGACCCCAGCTCC-CTAGCCTCC---------GGTCTTTGACCTTCCCTGTCTCCACTGCTTTTTCTGCAGGATTGAGCCAAAGATACCATCTTGGGGACACGGATATCCCACTCTTGTTTAATCTCTTTTCCTCCCGGCCCTTCTTCCCC---ACT-CCCTAAAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45307663 516 +  49145316 aagga-ggaggcagagagctaataatatctaacttgaggagttaggtaatgatgaaaaatcctggctttcaagcactcagtctagaaactgactcactgtGTAGGATAATGGGATTGTAGGTATAATGATGA---TTTTTCACCCAATATTCCACCCACACCCATCTCTCTCTGTAACAGATTCTGTCAGTGTTCCTCAACCCATGTTCCCCAGATCCCTTTACCATTTTTATGCATTCTAGATCGAGGCTTCTTTCCCTTTCCAAAGTGAACACTTAGGTCTCTTCTTTGA------GCCAGGGAGGACTCAAAATGCCTTGGAATGTA--TATTCCCTG-CCAAACTGCCAC--TGCCTGCTGTTTGCAGGGAAATAGAAAGACCACAGCTCC-----CCTCC---------CGTCTTTGACCTTCTCTGTCTCCACTGC-TTTTCTGCAGAATTGGGCCAAATATACCATCTGAGGGACATGAATATCCCACCCGTGTTTAATTTCTTTTCCTCCCAGGCCTTCTTCCCC---ACTCCCCTAAAAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19468356 518 - 122678785 AAGGA-CAGGG--GCGGGATGAGAATCCCTAACTTGAAGAGCTGGGTAATGATGGAAGGCACTGGCTTCAAAGCACAGAGCCT-GGATCTGACTCATGATGTAGGATAATGAGATTGCGGTGATAACGATTA--TTCTCTCTCCCGATATCCCACCCACACCTGTCTCCCTCTGTAACAGACGATGCCAGTGCTCCACACTGCTTG---CCCAGATCCCTTTGCCATTTTAATGCGCTCTGGATCATGGTTTATTTCACCTTCCAATGCGGACACTTGCTTCTCTT-TGTGGGGGACTGCCAGGAAGGACCCAAAATGCCTCGGGATCTATGTATTCCAGGGACATCTCTTTACCATGACTGCCATTTGTGGAAGCAT--GAATGCCCTAGTTCTGTTGGTCACCAGTTGCCAGGGTGTGTGACCTTCTATGTCTCCTCCAC-TTTCC--CAGCTCCATGCAAAAGATGCGGT-GGAGGGATG-------------ATTGCTCAGTC-CTTTACTTCTCAGCCCTCTTTCCCCTGTACC-CCCTACAAT
i canFam3.chr1              I 817 C 0
e macFas5.chr19              54882420 20327 +  59248254 M

a score=19977.000000
s hg38.chr19_GL949751v2_alt     21270 10 +   1002683 GTAATTTTCA
s panTro4.chr19              58957990 10 +  63644993 GTAATTTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824484 10 +  60714840 GTAATTTTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102589962 10 - 106955855 GTAATTTTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59881337 10 +  64156825 GTCATTTTCA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47018971 10 +  51301725 gtcattttca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46731976 10 +  50890351 GTCATTTTCA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19468874 10 - 122678785 GTTACATTCA
i canFam3.chr1              C 0 I 49
e calJac3.chr22              45308179  0 +  49145316 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=374368.000000
s hg38.chr19_GL949751v2_alt     21280 216 +   1002683 Agccaggcgtggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggcagagcacctgaggtcaggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatagaatattagctgggtgtggtggtgcatgcctgtaatcccagctatttgggaggctgaggcaggagaatctcttgaacctggtaggcgga
s panTro4.chr19              58958000 216 +  63644993 Agccaggcgtggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggcagatcacctgaggtcaggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaataaaatattagctgggcgtggtggtgcatgcctgtaatcccagctatttgggaggctgaggcaggagaatctcttgaacctggtaggcgga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824494 216 +  60714840 agccaggcatggtggctcacgcctataatctcagcgctttgggaggtcgaggcgggcagatcacctgagctcaggagtttgagaccagcctgaccaacatgtagagactccacctctactaaaaatacaatattagctgggcgtggtggtgcatgcctgtaatcccagctatttgggaggctgaggcaggagaattgcttgaaccccgtaggcaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102589972 216 - 106955855 Agccaggcacggtggctcacgcctgtaatcccagtactttggaaggtcgaggcgggcagatcacctgaggtcgggagttcgagaccagcctgaccaacacggagaaaccccatctctactaaaaatacaatattagccgggcgtggtggtgcatgcctgtaatcccagctatttgggaggctgaggcaggagaattgcttgaacccggtaggcgga
i nomLeu3.chr10             C 0 M 1381
s rheMac3.chr19              59881347 216 +  64156825 Cgccgggcgtggtggctcactcctgtaatctcagcactgtgggaggccaaggtgggcagatcacctgaggtcgggagttcgagaccagcctgaccaacacagagaaaccccatctctactaaaaatacaaaattagccaggcgtggtggtgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcgga
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47018981 216 +  51301725 cgccgggcatggtggctcactcctataatctcagcactgtgggaggccaaggtgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacacggagaaaccccatctctactaaaaatacaaaattagccaggcgtagtggtgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcgga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46731986 216 +  50890351 Cgccgggcgcggtggctcacacctgtaatctcagcactgtgggaggccgaggtgggcggatcacctgagatcgggagttcgagaccagcctgaccaacacggagaaaccccatctctactaaaaatacaaaattagccaggcgtggtggtgcacacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcgaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19468884  49 - 122678785 I
e calJac3.chr22              45308179   0 +  49145316 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=117536.000000
s hg38.chr19_GL949751v2_alt     21496 97 +   1002683 ggttgc-agtgagccaagatcacgccattgcactccagcctgggcaacaagagcgaaactctgtctcaaaactaaataaataat-aaataaaataaaaC
s panTro4.chr19              58958216 97 +  63644993 ggttgc-agtgagccaagatcacgccattgcactccagcctgggcaacaagagcgaaactctgtctcaaaactaaataaataat-aaataaaataaaaC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824710 97 +  60714840 ggttgc-agtgagccgagatcatgccattgcactccagcctgagcaacaagagcaaaactctgtctcaaaactaaataaataat-aaatgaaataaaaC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59881563 98 +  64156825 ggttgc-agtgagccaagatcatgccactgcactccagcctgggcaacaagagcgaaattctgtctcaaaaataaataaataataaaataaaataaaAT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47019197 99 +  51301725 ggttgcaaatgagccaagatcatgccactgcactccagcctgggcaacaagagcgaaattctgtctcaaaaataaataaataataaaataaaataaaat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46732202 94 +  50890351 ggttgc-agtgagccaagaccatgccactgcactccagcctgggcaacaagagcgaaattctgtctcaaaaataaataaataataaaataaaaTA----
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19468884 49 - 122678785 I
e calJac3.chr22              45308179  0 +  49145316 C
e nomLeu3.chr10             102590188 1381 - 106955855 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=15472.000000
s hg38.chr19_GL949751v2_alt     21593 17 +   1002683 GTCAC----------TTTCACACTAAT
s panTro4.chr19              58958313 17 +  63644993 GTCAC----------TTTCACACTAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824807 17 +  60714840 GTCACNNNNNNNNNNtt----------
i ponAbe2.chr19             C 0 I 4
s rheMac3.chr19              59881661 17 +  64156825 GTCAC----------TTTCACACTAAT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47019296 17 +  51301725 atcac----------tttcACACTAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46732296 16 +  50890351 -TCAC----------TTTTACACTAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45308179 17 +  49145316 GTCAC----------TTTTGCACGAAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19468884 49 - 122678785 I
e nomLeu3.chr10             102590188 1381 - 106955855 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=69553.000000
s hg38.chr19_GL949751v2_alt     21610 58 +   1002683 GCTGTCTAAGAGCCTGCTTCTGGTGGAGCTGAATCAGAGAACCCCTCAAAAGCAACAA
s panTro4.chr19              58958330 58 +  63644993 GCTGTCTAAGAGCCTGCTTCTGGTGGAGCTGAATCAGAGAACCCCTCAAAAGCAACAA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59881678 58 +  64156825 GCTTTCTAAGGGCCTGCTTCTGGTGGAGCTGAATCAGAGGACCCCTCAAAAGCAACAA
i rheMac3.chr19             C 0 I 8
s papAnu2.chr19              47019313 58 +  51301725 GCTTTTTAAGGGCCTGCTTCTGGTGGAGCTGAATCAGAGAACCCCTCAaaagcaacaa
i papAnu2.chr19             C 0 I 8
s chlSab2.chr6               46732312 58 +  50890351 GCTTTCTAAGGGCCTGCTTCTGGTGGAGCTGAATCAGAGAATCCCTCAAAAGCAACAA
i chlSab2.chr6              C 0 I 8
s calJac3.chr22              45308196 54 +  49145316 ----GCTAAGAGCCTGCTTTTGGTGGAGCTGGATCTGAGAACACCTCAAGGGCAACAC
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19468884 49 - 122678785 I
e ponAbe2.chr19              55824824  4 +  60714840 I
e nomLeu3.chr10             102590188 1381 - 106955855 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=71081.000000
s hg38.chr19_GL949751v2_alt     21668 52 +   1002683 -ttttttt---tttttt----gagaca--gtctcactctgtctcccaggctggagtgcagtg
s panTro4.chr19              58958388 49 +  63644993 -ttttttt---ttttttt---gagaca--atctc----tgtctcccaggctggagtgcagtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824828 52 +  60714840 -ttttttt---tttttt----gagaca--gtctcactctgtctcccaggctggagtgcagtg
i ponAbe2.chr19             I 4 C 0
s rheMac3.chr19              59881744 54 +  64156825 -ttttttt---tttttt----gagacagagtcttactctgtcaccctggctggagtgcagtg
i rheMac3.chr19             I 8 C 0
s papAnu2.chr19              47019379 58 +  51301725 -ttttttt---tttttttttggagacagtgtcttactctgtcaccctggctggagtgcagtg
i papAnu2.chr19             I 8 C 0
s chlSab2.chr6               46732378 61 +  50890351 -tttttttttattttttttttgagatagagtctcactctgtcaccctggctggagtgtagtg
i chlSab2.chr6              I 8 C 0
s calJac3.chr22              45308250 58 +  49145316 ttcttttttaatttttt----gaaacagagtctcactctgtcgcccaggctggagtgcagtg
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19468884 49 - 122678785 I
e nomLeu3.chr10             102590188 1381 - 106955855 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=24930.000000
s hg38.chr19_GL949751v2_alt     21720 13 +   1002683 gtacaatctcggc
s panTro4.chr19              58958437 13 +  63644993 gtacaatctcggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824880 13 +  60714840 gtacaatctcggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102591569 13 - 106955855 GTAcaatctcagg
i nomLeu3.chr10             M 1381 C 0
s rheMac3.chr19              59881798 13 +  64156825 gctcaatcttggc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47019437 13 +  51301725 gctcaatcttggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46732439 13 +  50890351 gctcaatcttggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45308308 13 +  49145316 gtgcaatctcggc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19468884 49 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=365110.000000
s hg38.chr19_GL949751v2_alt     21733 222 +   1002683 --tttggaacctccccctctggggttcaagcaattctcctgcctcagcctcccaaggagctgggattacaagcacccgccacctcaccccgctaattttttatatttctagtagagatgaggtttcaccatgttggttaggctggtctcaaactccagagctcaagtgttctgcccactttggcctcccaaagtgctgggatta----cataagccaccatgcctggc
s panTro4.chr19              58958450 221 +  63644993 --tttggaacctccacctctggggttcaagcaattctcctgcctcagcctcccaaggagctgggattacaagcgcccgccacctcaccccgctaattttttatatttctagtagagatgaggtttcaccatgttggttaggctggtctcaaattccagagctcaagtgttctgccc-ctttggcctcccaaagtgctgggatta----cataagccaccatgcccggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55824893 222 +  60714840 --tttgcaacctccgcctccggggttcaagcaattctcctgcctcagcctcccaaggagctgggattacaagcgcccgccacctcgccccgctatttttttatatttctagtagagatgaggtttcaccatgttggctaggctggtctcaaactccagagctcaagtgttctgcccaccttggcctcccaaagtgctgggatta----catgagccaccatgcacggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102591582 222 - 106955855 --tttgcaacctccacgtccggggttcaagcaattctcctccctcagcctcccaaggagctgggattacaagcgcccgccacctcaccctgctaattttttatatttctagtagagatgaggtttcaccatgttgcctaggctggtctcaaactccagagctcaagtgttctgcccacctttgcctcccaaagtgctgggatta----catgagccaccatgcccggc
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47019450 225 +  51301725 --tttgcaatctccgcctccggggttcaggcaattctcctgcctcagcctcccaaggagctgggattacaggtgcccaccaccacgctctgctaattttttatatttctagtagagatgaggtttcaccatgttggccaggctggtctcgaactcctgagctcaggtgatc-gcccaccttggcctcccaaagtgctgggattataggcatgagccaccatgcctggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46732452 225 +  50890351 --tttgcaatctctgcctccagggttcaagcaattctcctgcctcagtctcccaaggagctgggattagaggtgcccgccaccatgccctgctaattttttatatttctagtagagatgaggtttcaccatgttggccgggctggtctcgaactcctgagctcaggtgatc-gcccaccttggcctcccaaagtgctgggattataggcatgagccaccgcgcctggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45308321 228 +  49145316 tcactacaacctccacctcctgggttcaagagattctcctgcctcagcctcccaaggagctgggattacatgtacctgccagcacaccctgctgatttttcatatttttagtagagacaaggtttcaccatgttggccaggctggtctcaaactcttgggctcaagtgatctgcccaccttggcctcccaaagtgctaggattacaggcacgagccactgcgcccagc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19468884  49 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59881811   0 +  64156825 C

a score=818858.000000
s hg38.chr19_GL949751v2_alt     21955 429 +   1002683 cATAAGCAACAATTCTATCAGTGCATCTCCAAGGACTTATGAAAACAGGGCAGGAACAGCTGCTCCTGGACTC-TCAGTTTCCCCAGATGGAAGCAGAGAAACAGCAGCCTTGCCTTGTCCTTTCTGTTCTCCCCTTTTCCAGCCTACGGTATCTTTCACACAGCAATTCACTAGAAATGAGAAGTACATTATTGCAAAA--TTCTCATCTTCATATGA-CCCCATAATCAGCTGAACTGGGTTCACCCTGAGATGTCCACAGATCCTGGCC-AAATGTTGCATCAGTATTTGCAAATTGCCAGAATAAATCATAACTTGCTACGC-------TACTAAAGTCAGCGTGAGCAACAAGATACAGCCTGACACGGGGCATAAATGGAGGCACAGGCACCAGAAAGAAAGTCAAGTCTTGTGTGATAAAATTCATCTTCATTC
s panTro4.chr19              58958671 429 +  63644993 cATAAGCAAGAATTCTATCAGTGCATCTCCAAGGACTTATGAAAACAGGGCAGGAACAGCTGCTCCTGGACTC-TCAGTTTCCCCAGATGGAAGCAGAGAAACAGCAGCCTTGCCTTGTCCTTTCTGTTCTCCCCTTTTCCAGCCTACAGTATCTTTCACACAGCAATTCACTAGAAGTGAGAAGTACATTATTGCAAAA--TTCTCATCTTCGTATGA-CCCCATAATCAGCTGAACTGGGTTCACCCTGAGATGTCCACAGATCCTGGCC-AAATTTCGCATCAGTATTTGCAAATTGCCAGAATAAATCATAACTTGCTACGC-------TACTAAAGTCAGCATGAGCAACAAGATACAGCCTGACACAGGGCATAAATGGAGGCACAGGCACCAGAAAGAAAGCCAAGTCTTGTGTGATAAAATTCATCTTCATTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55825115 429 +  60714840 cATAAGCAACAATTCTATCAGTGCATCTCCAAGGACTTATGAAAACAGGGCAGGAACAGCTGCTCCTGGACTC-TCAGTTTCCCCACATGGAAGCAGAGAAACAGCAGCCTTGCCTTGTCCTTTCTGTTCTCCCCTTTTCCAGCCTACAGTATCTTTCACGCAGCAAGTCACTAGAAATGAGAAGTACATTATTGCAAAA--TTCTCGTCTTCATATGA-CCCCATAATCAGCTGAACTGGGTTCACCCTGAGATGTCCACATATCCTGGCC-AAATTTCGCATCAGTATTTGAAAATTGCCAGAATAAATTATAAGTTGCTATGC-------TACTAGAATCAGCCTGAGCAACAAGATACATCCTGACACGGGGCATAAATGCGGCCACAGGCACCAGAAAGAAAGCCAAGTCTTGTGTGATAAAATTCATCTTCATTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102591804 428 - 106955855 cATAAGCAACAATTCTATCAGTGCATCTCCAAGGACTTATGAAAACAGGGCAGGAACAGCTGCTCCTGGACTC-TCAGTTTCCCCAGATGGAAGCAGAGGAACAGCAGCGTTGCCTTGTCCTTTCTGTTCTCCCCTTTTCCAGCCTACAGTATCTTTCACGCAGCAATTCACTAGAAATGAGAAGTACATTATTGCAAAA--TTCTTGTCTTCATATGA-CCCCATAATCAGCTGAACTGGGTTCACCCTGAGATGTCCACATATCCTGGCC-AAATTTCGCATCAGTATTTGCAAATTGCCAGAATAAATTATAAGTTGCTATGC-------TACTAGAATCAGACTGAGCAACAACATACAGCCTGACAC-GGGCATAAATGGAGCCACAGACACCAGAAAGAAAGCCAAGTCTTGTGTGATAAAATTCATCTTCATTC
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47019675 432 +  51301725 cataagcAACAATTCTATCAGTGCATTTCCAAGGACTGATGAAAACAGGTCAGGAACAGCTGCTCCTGGACTCTTCTGTTTCCCCAGATGGAAGCAGAGAAACAGCAGCCTTGCCTCATCCTTTCTGTTCTCCCCTTTTCCAGCCTACAGTATCTTTCATGCAGCAATTCACTAGAAATGAGAAGTACATTATTGCAAAA--TTCTGGTCTTCACATGACCCCCATAATCAGCTGGACTGGGTTCACCCTGAGATGTCCACATATCCTGGCCAAAATTTCACATCAGTATTTACAAATTGTCAGAATAAATTATAAGTTGCTATGC-------TACTAGAATCAGACCGAGCAACAAGATACAGCCTGACACGGGGCACAAATGGAGCCACAGGCACCAGAAAGAAAGTCGAGTCTTGTGTGATAAAATTCATCTTCATTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46732677 431 +  50890351 cATAAGCAACAATTCTATCAGTGCATTTCCAAGGACTGATGAAAACCGGGCAGGAACGGCTGCTCCTGGACTCTTCCGTTTCCCCAGATGGAAGCAGAGAAACAGCAGCCTTGCCTCATCCTTTCTGTTCTCCCCTTTTCCAGCCTACAGTATCTTTCACGCAGCAATTCACTAGAAATGAGAAGTACGTTATTGCAAAA--TTCTCATCTTCCCATGACCCCCATAATCAGCTGGACTGGGTTCACCCTGAGATGTCCACATATCCTGGCC-AAATTTCACATCAGTATTTACAAATTGCCAGAATAAATTGTAAGTTGCTATGC-------TACTAGAATCAGACTGAGCAACAAGATACAGCCTGACACGGGGCACAAATGGAGCCACAGGCACCAGAAAGGAAGTCGAGTCTTGTGTGATAAAATTCATCTTCATTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45308549 407 +  49145316 AAAAAGAAACAATTCTATCAGTGCATCTCCAAGGACTTATGAATCCAGGGCAGGCACAGCTGCTCCTGGATCC-TTGGGTTCCCCAGATGGAAGCAGAGAAGCAGCAGCCTTGCCTTGTCCCTTCAGTTC---------------------ATTTTTCAAGCAACACTTTGCTCGAAATGAGAAGTACATTATTGTAAAA--TTCTCGTCTTCATATGA-CCCCATAACCAGCTGAATTGGGTTCCCCCCAAGATGTCCACATATCCCGGCC-AAATTTCACATCACTATTTACAAATTGCCAGAATACATTATAAATTACTATAT-------TGCTGGAATCAGACTGAACAACGGGATACAGCCTGAC-TGGGACATAAATGAAGCCACAGGCACCAGAAAGAAAGCCGGGTCTTGTGTGATAAAATTCATCTTCATTC
i calJac3.chr22             C 0 I 327
s canFam3.chr1               19468933 385 - 122678785 CAAAAGCAGCAA-ACTCTCTGCACATCTCCAGGGACATAAGGAAACAGGATGGAAGCAGCTGTTCCCAGACTA-GTAGGACCCTCAATGGGAAGCAGAGAAACATCAGCC------------------TCTGGCTTCTTCC-----ACAGTGACTC----------ACTCACTAGAAATGAGAAGTAGACTATTACAAGACTTTTCCGCTTTCATACGG-CCCCATAACCTGCTGATCTGAGTTCACCCTGAGATGTCCACATTTCCTGGCC-AAATTTCATATCACTCCTTACAAACTGCCAGAGTAAATTACAAAGTCTCAGGTGTTGATGTAAAGGAATCAGGCTGAGCAGTGGGACACAGCTTGACACGGGGTGTAAATGAAGTCACCGTCACCAGAGAGGAGGCCTGGCCTTGTGTG-------------------
i canFam3.chr1              I 49 C 0
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59881811   0 +  64156825 C

a score=158849.000000
s hg38.chr19_GL949751v2_alt     22384 110 +   1002683 TCTACATTGCGATTGAACATAGAGTCGTTTTCTAGTGTGTTTTAGGCATATAAATACAGGCTGGGGACATCATACCTGTGCTTACAGATAtt-ttacttttattttattta
s panTro4.chr19              58959100 105 +  63644993 TCTACATTGCGATTGAACATAGAGTCGTTTTCTAGTGTGTTTTAGGCATATAAATACAGGCTGGGGACATCATACCTGTGCTTACAGATAtt-ttacttttattt-----a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55825544 110 +  60714840 TCTACATAGCGATTGAACATAGGGTCCTTTTCTAGTGTGTTTTAGGCATATAAATACAGGCTGGGGACATTATACCTGTGCTTAAAGATAtt-ttacttttattttattta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102592232 110 - 106955855 TCTACCTAGCGATTGAACATAGGGTCCTTTTCTGGTGTGTTTGAGGCATATACATACAGGCTGGGGACATTATACCTGTGCTTAAAGATAtt-ttacttttattttatttc
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47020107 106 +  51301725 TCTACAGAGCAATTGAATATAGGGTCCTTTTCTGGTGTGTTCAAGGCATATAAATACAGGCTGGGGACATTATACCTGTGCTtaaagatatt-ttacttttattt----ta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46733108 106 +  50890351 TCTACAGAGCAATTGAATATAGGGTCCTTTTCTGGTGTGTTTAAGGCATATAAATACAGGCTGGGGACATTATACCTGTGCTTAAAGATAtt-ttactgttattt----ta
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45309283  91 +  49145316 TCTACATAGCAGTTGAATATAGGGTCCTTTTCTTGTGTGTTTGAGGTATATAAATACAGGATGGGGACGTTATACCTGTGCTTAAAGATAt--------------------
i calJac3.chr22             I 327 C 0
s canFam3.chr1               19469318  64 - 122678785 -----------------CATGG---------------------AGACATCCGGATATGGGCCTGGGACATCATATCTGGGCTGAAAGACTTTATTCCGTTCA---------
i canFam3.chr1              C 0 I 25
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59881811   0 +  64156825 C

a score=230459.000000
s hg38.chr19_GL949751v2_alt     22494 133 +   1002683 tttactgaaacagggtctcgctctgtcacccaggctggagtgctgtggcgcaatcacagttcactg-aagcctcaacctcctgggcgcaaacgatctttctgcctgagcctcccaagtagctgggactacaggt
s panTro4.chr19              58959205 133 +  63644993 tttactgagatagggtctcgctttgtcacccaggctggagtgctgtggtgcaatcacagttcactg-aagcctcaacctcctgggtgcaaacggtcttcctgcctgagcctcccaagtagctgggactacaggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55825654 133 +  60714840 tttactgagacagggtctcgctctgtcacccaggctggagtgctgtggcgcaatcacggttcactg-aagcctcaacctcctgggctcaaatgatcttcctgcctgagcctcccaagtagctgggactacaggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102592342 133 - 106955855 tttactgagacagggtctcgctctgtcacccaggctggagtgctgtggcacaatcacagtttactg-aagcctcaacctcctgggctcaaacgatcttcctgcctgagcctcccaagcagctgggactgcaggt
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47020213 133 +  51301725 tttattgagacagggtctcgctctgtcactcaggctggagtgctgtgacacaatcacagttcactg-aagcctcaacctcctgggctcaaatggtcttcctgcctgagcctcccaagcagctgggactaaaggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46733214 133 +  50890351 tttattgagacagggtctcgctctgtcactcaggctggagtgctgtggcacaatcacagttcactg-aagcctcaacctcgtgggctcaaacgatcttcctgcctaagcctcccaagtagctgggactaaaggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45309374 129 +  49145316 -----tgaaacaaggtctcaccctgtcacccaggctggagtgcagtggtgcaatcacagctcactgaaagcctcaaactcctgggctcaaatgatcttcctgcctcagcctcccaagcagctgggactacaggc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19469382  25 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59881811   0 +  64156825 C

a score=478268.000000
s hg38.chr19_GL949751v2_alt     22627 200 +   1002683 gcacaccaccacgcctggctaatttttgtattttttgtagagatgggatcttaccaagttgtccaggctggtcttgaacccctgggctcaagtgatcctcctgcctcatcttcccaaagtcctggtattacagacgtgagccactgcgcccggcAAAGATATTTTATTCTGTTTAGAATTGTGATGATACAAATTTGAAC
s panTro4.chr19              58959338 198 +  63644993 gcacaccaccacgcctggctaatttttgtattttttgtagagatgggatctcaccaggttgtccaggctagtcttgaacccctgggctcaagtgatcctcctgcctcatcttcccaaagtcctggtatta--gacgtgagccactgcgccgggcAAAGATATTTTATTCTGTTTAGAATTGTGATGATACAAATTTGAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55825787 200 +  60714840 gcacactaccatgcctggctaatttttgtattttttgtagagatgggatctcaccaggttgcccaggctggtcttgaacccctgggcacaagtgatcctcctgcctcatcttcccaaagtcctgggattacagatgtgagccactgcgcccggcAAAGATATTTTATTCTGTTTAGAAtagtgatgatacaaatttgaac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102592475 200 - 106955855 gcacaccaccatgcctggctaatttttgtattttttgtagagatgggatctcacccagttgcccaggctggtcttgaacccctgggctcaagtgatcctcctgcctcatcttcccaaagtcctgggattacagacgtgagccactgcgcccggcAAAGATATTTTATTCTGTTTAGAATTGTGATGATACAAATTTGAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59881811 200 +  64156825 gcacaccaccatgcctggctaatttttgtattttttgtagagatgggatctcactaggttgccctggctggtcttgaacccctgggctcaagtgatcctcctgcctcatcttcctgaagtcctgggattacagacgtgagccactgcacccggcAAAGATATTTTATTCTGTTTAGAATTGTGGTGATACAAATTTGAAC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47020346 200 +  51301725 gcacaccaccatgcctggctaattttggtattttttgtagagatggggtctcaccaggttgcccaggctggtcttgaactcctgggctcaagtgatcctcctgcctcatcttcccgaagtcctgggattacagacgtgagccactgcacccggcaaagatattttattctgtttggaaTTGTGATGATACAAATTtgaac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46733347 200 +  50890351 gcacaccaccatgcctggctaatttttgtattttttatagagatgggatctcactgggttgccctggctggtcttgaacccctgggctcaagtgatcctcctgcctcatcttcctgaagtcctgggattacagacgtgagccactgcacctggcAAAGAAATTTCATTCTGTTTAGAATTGTGGTGATACAAATTTGAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45309503 200 +  49145316 ccacaccagcatgcctggccaatttttgtgttttttgtagagatgggatcttaccaggttgcccaggctggtcttgaacccctgggctcaagtgatcctcctgcctcatcttcccacagtcctgggattacagacatgagccattgtgcccagccGAGATATTTTATTCTGTTTAGGATTGTGATGATACAAATTTGAAC
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19469382  25 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=920567.000000
s hg38.chr19_GL949751v2_alt     22827 323 +   1002683 TCAAAAAGTACATTTTAAGAAATTATATA-atacccactgggatggctataattt-aaaaaaagaaaagtaagtgttgacaaggatgtggagatattggaacccacatatattactggaaggaa----tataacatgatacagccacaatgg-aaaatgatttggcagttcctcaaaaagttgaacataatagtcaccatatgtcctagcaaatccacttctaggtacatactcaagataatttacagcgcggagacaaacagatactcctaccacagtgttcc-agcaccattactcgctttagccaagaggtgcagacaacacaaatgt
s panTro4.chr19              58959536 323 +  63644993 TCAAAAAGTACATTTTAAGAAATTATATA-atacccactggaatggctataattt-aaaaaaagaaaagtaagtgttgacaaggatgtggagatattgtaacccacatatattactggaaggaa----tataacatgatacagccacaatgg-aaaatgatttggcagttcctcaaaaagttgaacataatagtcaccatatgtcctagcaaatccacttctaggtacatacccaagataatttacagcgcggagacaaacagatactcctaccacagtgttcc-agcaccattactcactttagccaagaggtgcagacaacacaaatgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55825987 323 +  60714840 tcaaaaaatacattttaagaaattatata-atacccactgggatggctataattt-aaaaaaggaaaagtaagtgttgacaaggatgtggagatattggaacccacatatattactggaaggaa----tataacatgatacagccacaatgg-aaaatgatttggcagctcctcaaaaagttgaacataatagtcaccatatgtcctagcaaatccacttctaggtacatacccaagataatttacagcacggagacaaacagatactcctaccacagtgttcc-agcaccattactcactttagctaagaggtacagacaacacaaatgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102592675 323 - 106955855 TCAAAAAATACATTTTAAGAAATTATATA-atacccactgggatggctataattt-aaaaaaagaaaagtaagtgttgacaaggatgtggagatattggaacccacgtatattactggaaggaa----gataacatgatacagccacaatgg-aaaatgatttggcagttcctcaaaaagttgaacataatagtcaccatatgtcctagcaaatccacttctaggtacatacccaagataatttacagtggggaggcaaacagatactcctaccactgtgttcc-agcaccattattcactttagccaagaggtgcagacaacacaaatgt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59882011 323 +  64156825 TCAAAAAATAAATTTTAAGAAATTATATA-atacccactgggatggctataattt-aaaaaaagaaaagtaagtgttgacaaggatgtggagatattggaacccacatagattactggaaggaa----tataacatgagacagccataatgg-aaaatgatttggcagttcctcaaaaagttgaacataatagtcaccatatgtcctagcaaatccacttctaggtacatacccaagataatttacagcagggaggcaaacagatactcctaccacaatgttca-agcaccattactcactttagccaagaggtgcagacaacacaaatgt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47020546 323 +  51301725 tcaaaaaataaattttaagaaattatata-atACCCACTGggatggctataattt-aaaaaaagaaaagtaagtgttgacaaggatgtggagatatTGGAACCCACATAGATTACTGGAAGGAA----TATAACATGATACAGCCATAATGG-AAAAtgatttggcagttcctcaaaaagttgaaCATAATAGTCACCATATGTCCTAGCAAATCCACTTCTAGGTACATACCCAAGATAATTTACAGCAGGGAGGCAAACAGATACTCCTACCACAGTGTTCA-AGCACCATTACTCACTTTAGCCAAGAGGTGCagacaacacaaatgt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46733547 323 +  50890351 TCAAAAAATAAATTTTAAGAAATTATATA-atacccactgggatggctataattt-aaaaaaagaaaagtaagtgttgacaaggatgtggagatattggaacccacatagattactggaaggaa----tataacatgatacagccataatgg-aaaatgatttggcagttcctcaaaaagttgaacataatagtcaccatatgtcctagcaaatccacttctaggtacatacccaagataatttacagcagggaggcaaacagatactcccaccacagtgttca-agcaccattactcactttagccaagaggtacagacaacacaaatgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45309703 326 +  49145316 TCAaaaactacatttaaagaaattatgta-atacccactgggatggctatcatttaaaaaaaagaaaaggaagtgttgacaaggatgtggagatattggaacccacatatattactggaaggaatgactataacatgatacagccacaatgg-aagacgatttggcagttcctcaaaaagttgaacataatagtcaccatatgtcctagcaattccacttctaggtacatacccaagataatttaaagcggggaggcaaacagatactcctgcca--gtgttca-agcaccattactcactgtagccaagaggtacagagaacacaaatgt
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19469407 325 - 122678785 TCAGAAAGTACATCTTCAGAAATTATATAcacacccactaggatgtctataataa-aataaaagggaaataagtgttggcaaggacgtggagatattggaaccctcatgtattactggtgggaa----tgtaaaatgttggggccacattggaaaaacaatttggcagtttctcaaaaagttaaacatag-agttaccatatgtctcagcaattctacttctaggtagatatccaagaaaactggaagcagggactcaaacaggtacttgcacactgatgctcagagcactattacttgccctacctgaaaggtatgaacactctagatgt
i canFam3.chr1              I 25 I 12
e macFas5.chr19              54882420 20327 +  59248254 M

a score=878187.000000
s hg38.chr19_GL949751v2_alt     23150 438 +   1002683 ccatcaaaagaagaacggggccaggcacagtagctcaagtctgtaatcccagcactttgggaagctgaggcgtgtggatcacctgaggtcaggagttcgagaccagcctagccaacatggtgaaaccccctctctactaaaaatacacaaattagctaggcatggtgacgggcgcctgtaggtccagctactcaggaggttaaggcaaaagaatcacttaaacctgggaggcggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaacaa-----aaacaaaaacaaaaa------aaagaatggataagcaa------aatgtggtctatccatacaatacgatgcttttcaccatgacaagaaatgaaacattgatgcatgctacagtacagacaaactttgaaaacattatg
s panTro4.chr19              58959859 443 +  63644993 ccatcaaaagaagaatggggccaggcacagtagctcaagtctgtaatcccagcactttgggaagctgaggcgtgtggatcacctgaggtcaggagttcgagaccagcctagccaacatggtgaaaccccctctctactaaaaatacacaaattagctaggcatggtgacgggcgcctgtaggtccagctactcaggaggctgaggcaaaagaatcacttaaacctgggaggcggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaaaacaaaaaaacaaaaacaaaaa------aaagaatggataagcaa------aatgtggtctatccatacaatacaatgcttttcaccatgacaagaaattaaacattgatgcatgctacagtacggacaaactttgaaaacattatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55826310 449 +  60714840 ccatcaaaagaagaatggggccaggcacagtagctcaagtctgtaatcccagcactttgggaagccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctagccaacatggtgaaaccccctctctactaaaaatacacaaattagctaggcatggtgacgggcacctgtagttccagctactcaggaggctgagacagaagaatcacttgaacctgggaggcggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaacaaaagaaaaaaacaaagaaagaatggataagcaa------aatgtggtctatccatacaatacgatgcttttcaccatgacaagaaatgaaacattgatgcatgctacagtacggataaactttgaaaacattatg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102592998 430 - 106955855 ccatcaaaggaagaatggggccaggcacagtagctcaagtctgtaatcccagcactttgggaagccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaactccctctctactaaaaatacacaaattagctgggcatggtgacgggtgcctgtagttccagctactcaggaggctgaggcagaagaatcacttgaacctgggaggcggaggttgcagtgagttgagattgtgccactgcactccagcctgggcaacagagcaagactccatctcaaaaaaaaaa-------------aaaaaaa------aaagaatggataagcaa------aatgtggtctatccatacaatacgatgcttttcaccatgacaagaaatgaaacactgatgcatgctacagtacggataaacttcgaaaacattatg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59882334 425 +  64156825 ccatcaaaagaagaatgaggccaggcgcagtagctcaagtctgtaatcccagcactttgggaagccaaggcaagtggatcacttgaggtcaggagtttgagaccagtctgaccaacatggtgaaaccccttctctact-aaaatacaaaaattagttgggcatggtggcgggcgcctgtagttccagctactcaggaggatgaggcagaagaatcatttgaacctaggaggcggaggttgcagtgagctgagatcatgccactgcactccagcctgggcgacagagcaagactccatctcaaagaaaaaa----------------aaaa------ag-gaatggataagcaa------aatgtggtctgtccatacagtatgatgcttttcaccatgacaagaaatgaaacattgatacatgctatagtatggataaactttgaaaacatcacg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47020869 328 +  51301725 ccatcaaaagaagaatggggccaggcacagtagctcaagtctgtaatcccagcactttgggaagctgaggcaagtggatcacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccttctctactaaaaatacaaaaattagttgggcatggtggcgggcgcctgtagtcccagctactcaagaggatgaggcagaagaatcccttgaacctgggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaa----------------aaaa------aa---------------------------------------------------------------------------------------------------------gaaaacatcatg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46733870 427 +  50890351 ccatcaaaagaagaatggggccaggcgcagtagctcaagtctgtaatcccagcactttgggaagccgaggcaagtggatcacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccttctctactaaaaatacaaaaatgagttgggcatggtggcgggcgcctgtagttccaactactcaggaggatgaggcagaagaatcacttgaacccgggaggcggaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagcaagactccatctcaaagaaaaaa----------------aaaa------aaagaatggataagcaa------aatgtggtctgtccatacagtatgatgcttttcaccatgacaagaaatgaaacattgatacatgctatagtacggataaactttgaaaacatcatg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45310029 431 +  49145316 ccatcaaaaaaagaatggggccaggtgcggtag--cacgcctgtaatctcagcactttgggaggctgaggcaggtggatcacctgcggtcaagagttcaagaccagcctggccaacatggggaaaccccgtctctactaa--------aaattagccaggcatggtggcgcatgcctgtacttccagctactcaggaggctgaggcaggagaacagcctgaatctgggaggaagaggttgcagtgggccgagatcgtgccactgcactgcagcctgagccacagagcaagacttcatctcaaaaaagaaa--------aaaaaaaaaaaa------aaggaatgaataagcaaatgtggaatgtggtctatccatacaatgagatgcttttcaccatgacaggaaatgaaacattgatacatgctacagtacagataaactttgaaagcattatg
i calJac3.chr22             C 0 I 288
e canFam3.chr1               19469732  12 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=280190.000000
s hg38.chr19_GL949751v2_alt     23588 130 +   1002683 ctaaagagaaagga----------gct--agtcacaaaggatcacatagtgtatgaatccacttacacaaaatgtccagaatagacaaaatcatagacacagagaagcatatgaatggttggaagggcctggtgggaaagtg
s panTro4.chr19              58960302 130 +  63644993 ctaaagagaaagga----------gct--agtcacaaaggatcgcatagtgtatgaatccacttacacaaaatgttcagaatagacaaaatcatagacacagagaagcatatgaatggttggaagggcctggtgggaaagtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55826759 142 +  60714840 ctaaagagaaatgctaaacattatgctaaagtcacaaaggatcacatagtgtatgaatccacttacacaaaatgtccagaatagacaaaattatagacacaaagaagcctatgaatggttggaagggcctgatgggaaagtg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102593428 130 - 106955855 ctaaagagaaagga----------act--agtcacaaaggatcacatagtgtatgaatccacttacacaaaatgtccagaatagacgaaatcatagacacaaagaggcatatgaatggttggaagggcctggtgggaaagtg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59882759 130 +  64156825 ctaaagtgaaagga----------ggt--agtcacaaaggaccacatagtatatgaatccatttacacaaaatgtccagaatagacgaaatcatagacacaaagaagcatatgaatggttggcagggcctggtgggagagtg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47021197 129 +  51301725 cTAAAGTGAAAGGA----------GCT--AGTCACAAAGGACCACATAGTATATTAATCCA-CGacacaaaatgtccagaatagacaaaatcATAGACACAAAGAAGCATATGAATGGttggcagggcctggtgggagagtG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46734297 125 +  50890351 ctaaagtgaaagga----------gct--agtcacaaaggaccac-----atatgaatccacttacacaaaatgtccagaatagacgaaatcatagacacaaagaagtatatgaatggttggcagggcctggtgggagagtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45310748 130 +  49145316 ctaaagcaaaaaga----------gct--agtcagaaagaatcatgtagtgaatgaatccacttacacaaaatgtccagaatagatgaaaccatagacacaaagaagcatattaatggttggcagggtctggcgggagagtg
i calJac3.chr22             I 288 C 0
e canFam3.chr1               19469732  12 - 122678785 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=809384.000000
s hg38.chr19_GL949751v2_alt     23718 307 +   1002683 ggaaatgaggagtgactgctt---aatgggtacaagattttcttttagggtgatgagaatgttctggaattatgtagtggtgatggttatactacctcatgaagatacaaaatgccagtgaattggacac---tttacaagggtgaatttttggactgtgaattatatatcaataaaAAAAGAAAGAAAATAAATGATACAAGAGCTCAAAATAGAAAAGCTTCTCTTCCTCCTCCC--CCTCACACC-TCACTAGATCTCCCACCTCGTTTCTGATACTTCTGTGTTCCTCTCTCC-CATTAGA-TTTCATATCTTT
s panTro4.chr19              58960432 307 +  63644993 ggaaatgaggagtgactgctt---aatgggtacaagattttcttttagggtgatgagaatgttctggaattatgtagtggtgatggttatactacctcattaacatacaaaatgccagtgaattggacac---tttacgagggtgaatttttggactgtgaattatacatcaataaaAAAAGAAAGAAAATAAATGATACAAGAGCTCAAAATAGAAAAGCTTCTCTTCCTCCTCCC--CCTCACACC-TCACTAGATCTCCCACCTTGTTTTTGATACTTCTGTGTTCCTCTCTCC-CATTAGA-TTTCATATCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55826901 306 +  60714840 ggaaatgaggagtgactgctt---aatgggtacaagattttcttttagggtgatgagaatgttctggaattatgtagtggtgatgattatactacct-atgaatatacgaaatgccagtgaattgtatac---tttacaagggtgaatttttggaacgtgaattatatatcaataaaAAAAGAAAGAAAATAAATGATACAAGAGCTCAAAATAGAAAAGCTTCTCTTCCTCCTCCC--CTTCAAACC-TCACTAGATCTCCCACCTTGTTTCTGATACTTCTATGCTCCTCTCTCC-CGTTAGA-TTTCATATCTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102593558 310 - 106955855 ggaaatgaggaatgactgctt---aatgggtacaagattttcttttagggtgatgagaatgttctggaattatgtagtggtgatggttatactacctcatgaatatacaaaatgccagtgaattgtatac---tttacaagggtgaatttttggagtgtgaatAATATATTaatagaaaaagaaagaaaataaatgatacaagagctcagaatagaaaagCTTCTCTTCCTCCTCCT--CCTAACACCTTCACTAGATCTCCCACCTTGTTTCTGACACTTCTGTGTTCCTCTCTCCTTGTTAGATTTTCCTATCTTT
i nomLeu3.chr10             C 0 M 100
s rheMac3.chr19              59882889 307 +  64156825 ggaaatgaggagtgactgctt---aatgggtacaagattttctttcagggtgatgagaatggtctggaattatgtagtggtgatggttatactaccttgtgaatatacaaaatgccagtgaattgcacac---tttacaagggtgaatttttggaatgtgaattatatatcaataaaAAAAGAAGGAAAATAAATGACACAAGAGCTCAAAATAGAAAAGTTTCTCTTCCTCCTCCC--CCTCACACC-TCACTAGATCTCCCACCTCCTTTCTGATACTTGTGTGTTCCTCTCTCC-CATTAGA-TTTCATATCTTT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47021326 307 +  51301725 GGAAATGaagagtgactgctt---aatgggtacaagATTTTCTTTCAGGGTGATGAGAATGGTCTGGAATTAtgtagtggtgatggttatactACCTTGTGAATATACAAAATGCCAGTGAATTGCACAC---TTCACAAGGGTGAATTTTTGGAatgtgaattatatatcaataaaaaaagaaggaaaataaatgacacaAGAGCTCAAAATAGAAaagtttctcttcctcctccc--cctcacaCC-TCACTAGATCTCCCACCTCCTTTCTGATACTTCTGTATTCCTCTCTCC-CGTTAGA-TTTCACATCTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46734422 300 +  50890351 ggaaat---gagtgactgctt---aatgggtacaagattttctttcagggtgatgagaatggtctggaattatgtagtggtgatggttatactaccttgtgaatatacaaaatgccagtgaattgtacac---tttacaagggtgaatttttggaatgcgaattatatatcaataaaAAAA----GAAAATAAATGACACAAGAACTCAAAATAGAAAAGTTTCTCTTCCTCCTCCC--CCTCACACC-TCACTAGATCTCCCACCTCCTTTCTGATACTTCTGTGTTCCTCTCTCC-CATTAGA-TTTCATATCTTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45310878 309 +  49145316 ggaaatggggagtgactgcttctcagtgggtacaagatttcattttagggtgatgaggatgttctggaattatgtggtggtgatggttatactacctcgtgaatatccg-aatgctagtgaattgtacac---tttacaagggtgaatttttggaatgtgaattatatatccataaaAAAAGAAAGAAAACAAAAGATACAAGAGCTCAAAATAGAAAAACTTCTCTTTCTCCTCCC--TCTTACACC-TCACTAGATCTCCCTCCTTATTTCTGATAATTCCATGTTTCTCTCTTC-TGTTAGA-CTTCGTGTCTTT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19469744 310 - 122678785 gggaatggggagaaactactt---acagggtaggagatttcatttgggggtgataaaagtgttctggaattacatagtggtgacagttgcataaacttgtt-atatactaaatgccactgaattgtacacttatttaaaagggtaaatttatggaatgtgaattatgagtcaata-aaAAAGAAAGAAAATAAATAATGCAAGAGCTAAAAACATGAATGCACTTCTTCCTCTTCCCTGTCTCACACA-GCACTAGACTTCCTGCCTTATTTCAGATACGTCCATGCTCCTTGACTC-TGTCAGA-TTTCAGGTCTCT
i canFam3.chr1              I 12 C 0
e macFas5.chr19              54882420 20327 +  59248254 M

a score=426973.000000
s hg38.chr19_GL949751v2_alt     24025 212 +   1002683 CTCAGAAAACGTTCCTGACGTGAATTGTGTTCGTAGTGCTAGGGTAGCAGACATTTCCCAAGCCTACTATCATGGAATAAAAACGTTTCAAA-------TAGTTATCTTGCAAGAACACTTTGGAGGATACCTTTTTGAAAACCGATTATACCAGCACAGACTGCTAGCAACAACCTTCAGCAACTTTGGCTCTTTGGAGTAGGTTGCAGGAAGATTAT
s panTro4.chr19              58960739 212 +  63644993 CTTAGAAAACGTTCCTGACGTGAATTGTGTTCGTAGTGCTAGGGTAGCAGACATTTCCCAAGCCTACTATCATGGAATAAAAACGTTTCAAA-------TAGTTATCTTGCAAGAACACTTTGGAGGATACCTTTTTAAAAACCGATTATACCAGCACAGACTGCTAGCAACAACCTTCAGCAACTTTGGCTCTTTGGAGTAGGTTGCAGGAAGATTAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827207 212 +  60714840 CTTAGAAAACGTTCCTGACGTGAATTGTGTTCATAGTGCTGGGGTAGCAGTCATTTCCCAAGCCTACTATCATGGAATAAAAACGTTTCAAG-------TAGTTATCTTGCAAGAACACTTTGGAGGATACCTTTTTAAAAACCGGTTATACCAGCACAGACTGCTAGCAACAACCTTCAGCAACTTTGGCTCTTTGGAGTAGGTTGCAGGAAGATTAT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59883196 211 +  64156825 CTTAGAAAACATTCCTGACGTG-ATTGTGTTCACAGTCCTAGGGTAGCAGTCATTTCCCAAGCCTAGTATCATGGAATAAAAACATTTCAAA-------TAGTTATCTTGCAAGAACACTTTGGAAGATACCTTTTCAAAAACCGATTATACCAGCACAGACTGCTAGCAACAACTTTCAGCAACTTTGGCTCTTTGGAGTAGGTTGCAGGAAGATTGT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47021633 212 +  51301725 CTTAGAAAACGTTCCTGACGTGAATTGTGTTCACAGTCCTAGGGTAGCAGTCATTTCCCAAGCCTACTATCAtggaataaaaacatttcaaa-------tagttATCTTGCAAGAACACTTCGGAGGATACCTTTTCAAAAACCGATTATACCAGCACAGACTGCTAGCAACAACTTTCAGCAACTTTGGCTCTTTGGAGTAGGTTGCAGGAAGATTGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46734722 212 +  50890351 CTTAGAAAACGTTCCTGATGTGAATTGTGTTCACAGTGCTAGGGTAGCAGTCATTTCCCAAGCCTACTATCATGGAATAAAAACGTTTCAAA-------TAGTTATCTTGCAAGAACACTTTGGAGGATACCTTTTCAAAAACCGATTATACCAGCACAGACTGCTAGCAACAACTTTCAGCAAATTTGGCTCTTCGGAGTAGGTTGCAGGAAGATTGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45311187 194 +  49145316 CTTAGAAAATGTTCCTGGCATGAATTGTGTTCATAGTGCTA-GGTAGTAGTCACTTTCCAAACCTACTATCATGGAATAAAAACGTTTCAAG-------TAG-----------------TTTGGAGGATACCTTTTTAAAACCCAATTATACCAGCACAGACTGCTAACAGCAACCTTCAGCAACTTCGGCTCTTTGGAGTAGGTTGTAGGAACATTAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19470054 201 - 122678785 CCAAGAAAACATTCCTGGTGTGAATTATGTTCATAAAGGTGAAGTAGAAATCATTTCCCAAGTCTGCTAATACTGAATAAAAACATTTTCAAAGGCTATTACTTATTTTGCAAGGACATTTTGGGAGATACCTTTGAAAAAA------------------ACTGGTTATGACAGCCTTGAACAATTTTGGCTCTTTGGAGTGGATTACAGGGAGGTTAT
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102593868 100 - 106955855 M
e macFas5.chr19              54882420 20327 +  59248254 M

a score=331149.000000
s hg38.chr19_GL949751v2_alt     24237 114 +   1002683 GACTTGCTGAAAGGAAGGATGATTAAGCATCTAGATGCCAATTTATATTCTGCATTTGGCCCTTAAAGTCTGGATGAGTTCCTGTTTCAGCCGAATGCTGCCAAAAGCTCTAAC
s panTro4.chr19              58960951 114 +  63644993 GACTTGCTGAAAGGAAGGATGATTAAGCATCTAGATGCCAATTTATATTCTGCATTTGGCCCTTAAAGTCTGGATGAGCTCCTGTTTCAGCCGAATGCTGCCAAAAGCTCTAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827419 114 +  60714840 GACCTGCTGAAAGGAAGGATGATTAAGCATCTAGATGCCAATTTATATTCTGCATTTGGCCCTTAAAGTCTGGATGAGCTCCTGTTTCAGCCGAATGCTGCCAAAAGCTCTAAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102593972 112 - 106955855 GACTTGCTGAAAGGAAGGATGA-TAAGCATCTAGATGCCAATTTATATTCTGCATTTGG-CCTTAAAGTCTGGATGAGCTCCTGTTTCAGCCAAATGCTGCCAAAAGCTCTAAC
i nomLeu3.chr10             M 100 C 0
s rheMac3.chr19              59883407 114 +  64156825 GACTTGCTGAAAGGAAGGATGATTAAGCATCTAGATGCCAATTTATATTCTGAATTTGGCCCTTAAAGTCTGGATGAGCTTCTGTTTCAGCCGAATGCTGCCAAAAGCTCTAAC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47021845 114 +  51301725 GACTTGCTGAAAGGAAGGATGATTAAGCATCTAGATGCCAATTTATATTCTGAATTTGGCCCTTAAAGTCTGGATGAGCTTCTGTTTCAGCCGAATGCTGCCAAAAgctctaac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46734934 114 +  50890351 GACTTGCTGAAAGGAAGGATGATTAAGCATCTAGATGCCAATTTATATTCTGAATTTGGCCCTTAAAGTCTGGATGAGCTTCTGTTTCAGCTGAATGCTGCCAAAAGCTCTAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45311381 114 +  49145316 GACTTGCTGAAAGGAAGGATGATTAAGCATCTAGATGGCAATTTATATTCTGCATTTGGCCCTTAAAGTCTGGATGAGCTCCTGTTTCAGCCGAATACTGCCGAAATCCTTAAC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19470255 114 - 122678785 GAGTTGCAGAAATTAAGGATGAGTAAGCAACTAGATGCCAACTTATGTTATATATTTGGCCATTAAAATCTGGATGAGCTCCCATTTTCATCCAAAGATGCCAAAAGCTCTAAA
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54882420 20327 +  59248254 M

a score=37319.000000
s hg38.chr19_GL949751v2_alt     24351 31 +   1002683 -tttttaatttttttttttttttttttttttt
s panTro4.chr19              58961065 26 +  63644993 -ttttt-----ttatttatttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827533 26 +  60714840 -ttttt-----ttaatttttttttttcttttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594084 26 - 106955855 -ttttt-----ttaatttttttttttcttttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883521 27 +  64156825 tttttt-----ttaattttttttttttttttt
i rheMac3.chr19             C 0 I 132
s papAnu2.chr19              47021959 27 +  51301725 tttttt-----ttaattttttttttttttttt
i papAnu2.chr19             C 0 I 7
s chlSab2.chr6               46735048 22 +  50890351 -----T-----TTAAttttttttttttttttt
i chlSab2.chr6              C 0 I 6
s calJac3.chr22              45311495 23 +  49145316 -TTAAA-----AAAAtttttttttttttt---
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470369  0 - 122678785 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=193738.000000
s hg38.chr19_GL949751v2_alt     24382 151 +   1002683 g-----gagacagagtctcactctgttgcccaggctggagggcagtggtgtaatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagtcacttgagtagctgggaatacaggcgcccaccacaatgcccagcaaat
s panTro4.chr19              58961091 151 +  63644993 g-----gagacagagtctcactctgttgcccaggctggagggcagtggtgtaatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagtcacttgagtagctgggaatacaggcgcccaccataatgcccagcaaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827559 151 +  60714840 g-----gagacagagtctcactctgttgcccaggctggagtgcagtggtataatctcgactcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagtcacttgagtagctgggaatacaggcgcccaccacaatgcctggcaaat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594110 151 - 106955855 g-----gagacagagtctcactctgttgcccagactggagtgcagtggtgtaatctcagctcactgaaacctctgcctcccaggttcaagcaattctcctgcctcagtcacttgagtagctgggaatacaggcacccaccacaatgcccggcaaag
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47021993 121 +  51301725 -tttttgagacagagtctca----------------------------------ctcggctcactgcaacctctacctcccaggttcaagcaattctcctgcttcagtcacttgagtagctgggagtacaggcgcccaccacaatgcctggcaaat
i papAnu2.chr19             I 7 C 0
s chlSab2.chr6               46735076 116 +  50890351 ------gagacagagtctta----------------------------------ctcggctggctgcaacctctacctcccaggttcaagcaattctcctgcttcagtcacttgagtagctaggaatacaggcgcccaccacaatgcctggcaaat
i chlSab2.chr6              I 6 C 0
s calJac3.chr22              45311518 132 +  49145316 -------agagacaatctcactctgttgcccaggctggagggcagtggtgccatctcagctcactgcaacctccacctcccagattca---aattctcctgcctcagcctcctgagtagctgggattacag----------taatggct---aaa-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470369   0 - 122678785 C
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59883548 132 +  64156825 I

a score=276355.000000
s hg38.chr19_GL949751v2_alt     24533 127 +   1002683 ttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtttcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacagatgtgagccacctcgcc
s panTro4.chr19              58961242 127 +  63644993 ttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtttcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggtgtgagccacctcgcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827710 127 +  60714840 ttttgtatttttagtagagacagggtttcaccatcttgcccaggctggtctcgaactcctgacctcaggtgatccacccacctcagccgcccaaagtgctgggattacaggcgtgagccacctcgcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594261  98 - 106955855 ttttgtatttttagtagagac-----------------------------tcgaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgggaatacaggtgtgagccacctcgcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883680 127 +  64156825 ttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattataggcgtgagccaccgcacc
i rheMac3.chr19             I 132 C 0
s papAnu2.chr19              47022114 127 +  51301725 ttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaggttatctgcccacctcggcctcccaaagtgctgggattataggcgtgagccacctcacc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46735192 127 +  50890351 ttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccacctcgcc
i chlSab2.chr6              C 0 I 352
s calJac3.chr22              45311650 127 +  49145316 ttttgaatgtttagtagagatggggtttcaccatgttgaccaggctcgtctcaaactcctgacctcaagtgatccgcccgccttggcctccaaaagtgctgggattacacgcgtgagccactgcgcc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470369   0 - 122678785 C
e macFas5.chr19              54882420 20327 +  59248254 M

a score=23961.000000
s hg38.chr19_GL949751v2_alt     24660 18 +   1002683 tggccCAAAAGCTCTAAT
s panTro4.chr19              58961369 18 +  63644993 tggccCAAAAGCTCTAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827837 18 +  60714840 tggccCCAAAGCTCTAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594359 18 - 106955855 tggccCAAAAGCTCTAAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883807 14 +  64156825 ----TCGGGAGCTCTAAT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022241 14 +  51301725 ----tcgGGAGCTCTAAT
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45311777 18 +  49145316 cggccCAAAAGCTCTAAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470369  0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=90187.000000
s hg38.chr19_GL949751v2_alt     24678 40 +   1002683 TTTTATGAGAAACTCTGAGGACAGAATCTTAGTCAATTGT
s panTro4.chr19              58961387 40 +  63644993 TTTTATGAGAAACTCTGAGGACAGAATCTTAGTCAATTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827855 40 +  60714840 TTTTATGAGAACCTCTGAGGACAGAATCTTAGTCAATTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594377 40 - 106955855 TTTTATGAGAACCTCTGAGGACAGAATCTTAGTCAATTGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883821 40 +  64156825 TTTTATGAGAACCTCTGAGGACAGAATCTTAGTCAATTGT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022255 40 +  51301725 TTTTATGAGAACCTCTGAGGACAGAATCTTAGTCAATTGT
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45311795 40 +  49145316 TTTTATGACAACCTCTGAGGACAGAGTCTTAGTCAAttgt
i calJac3.chr22             C 0 I 299
s canFam3.chr1               19470369 40 - 122678785 TTTTACAAGCATCTCCCAGGATAGAATCTTAGTCAATTCC
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=77243.000000
s hg38.chr19_GL949751v2_alt     24718 43 +   1002683 TAATGAATAAGCAACATTA-GAAAAA-AAATTCAATATTCACCTA
s panTro4.chr19              58961427 43 +  63644993 TAATGAATAAGCAACATTA-GAAAAA-AAACTCAATTTTCACCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827895 44 +  60714840 TAATGAATAATCAACATTAGGAAAAA-AAATTCAATATTCACCTA
i ponAbe2.chr19             C 0 I 35
s nomLeu3.chr10             102594417 44 - 106955855 TAATGAATAAGCAACATTAGGGGAAA-AAATTCAATATTCACCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883861 44 +  64156825 TAATGAATAAGCAACATTAGGGGGAA-AAATTCAATATTCACCTA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022295 44 +  51301725 TAATGAATAAGCAATATTAGGGGAAA-AAATTCAATATTCACCTA
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45312134 45 +  49145316 TAATGAATAAGCAACATCAGGAAAAATGCATTCAATATTCACCCT
i calJac3.chr22             I 299 I 1
s canFam3.chr1               19470409 44 - 122678785 TCATTGAAAAGCAACACCAGAGAAAA-TAACTTAATATTCACCAG
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=18731.000000
s hg38.chr19_GL949751v2_alt     24761 13 +   1002683 TTTTTGAGAATTT
s panTro4.chr19              58961470 13 +  63644993 TTTTTGAGAATTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102594461 13 - 106955855 TGTTTGAGAATTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883905 13 +  64156825 TGGTTGAGAATTT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022339 13 +  51301725 TGGTTGAGAATTT
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45312180 13 +  49145316 TTTTTGAGAATTT
i calJac3.chr22             I 1 I 422
s canFam3.chr1               19470453 13 - 122678785 TTTTTTAGAACTT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55827939 35 +  60714840 I
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=12195.000000
s hg38.chr19_GL949751v2_alt     24774 10 +   1002683 TAGAGTTATA
s panTro4.chr19              58961483 10 +  63644993 TAGAGTTATA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102594474 10 - 106955855 TAGAGTTATA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883918 10 +  64156825 TAGAGTTATA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022352 10 +  51301725 TAGAGTTATA
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19470466 10 - 122678785 TAAAGTTTTA
i canFam3.chr1              C 0 I 1
e ponAbe2.chr19              55827939 35 +  60714840 I
e calJac3.chr22              45312193 422 +  49145316 I
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=910.000000
s hg38.chr19_GL949751v2_alt     24784 1 +   1002683 A
s panTro4.chr19              58961493 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102594484 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883928 1 +  64156825 A
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022362 1 +  51301725 A
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19470476 1 - 122678785 I
e ponAbe2.chr19              55827939 35 +  60714840 I
e calJac3.chr22              45312193 422 +  49145316 I
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=196807.000000
s hg38.chr19_GL949751v2_alt     24785 193 +   1002683 CAAACTCTTGATTATATATATTCCTGAAGTACCTACTCTGCGTAGGT-CCT------GGTCCTACTCCCCAAATGGGTCACTGAAAAATTCACCCCCATTATTCCCCAAATCCCACCCTAGTTTTTCATCATGTCATATGGCAAACAACGCACTCTGTGCTGTTTTACACACCAGCTTCTTCAGAACCCGGAAGCACTTT
s panTro4.chr19              58961494 193 +  63644993 CAAACTCTTGATTATATATATTCCCGAAGTACCTACTCTGCATAGGT-CCT------GGTCCTACTCCCCAAATGGGTCACTGAAAAATTCACCCCCATTATTCCCCAAATCCCACCCTAGTTTTTCATCATGTCATATGGCAAACAACGCACTCTGTGCTGTTTTACACACCAGCTTCTTCAGAACCCGGAAGCACTTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102594485 194 - 106955855 CAAACTCTTGATTATACATATTCCCAAAGTAGCTACTCTGCGTAGGTCCCC------GGTCCTACTCCCCAAATGGGTCACCCAAAAATTCACCCCCATTATTCCCCAAATCCCACCCTAATTTTTCATCATGTCATATGGCAAACAACGCCCTCTGTGCTGTTTTACACACCAGCTTCTTCAGAACCCAGAAGCACTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59883929 191 +  64156825 CAAACTCTTGATTATACATATTCCTGAAGTACCTACTCTGCGTAGGT-CCT------GGTCCTACTCCCCAAATGGGTCACCCAAAAATTCACCCCCATTATTCCCCAAATCCCACCCTAGTTTTTCATCACGTAATATGGCAAACAACGCACTC--TGCTGTTTTACACACCAACTTCTTCAGAAACTGGAAGCACTTG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022363 193 +  51301725 CAAACTCTTGATTATACATATTCCTGAAGTACCTACTCTGCGTAGGT-CCT------GGTCCTACTCCCCAAATGGGTCACCCAAAAATTCACCCCCATTATTCCCCAAATCCCACCCTAGTTTTTCATCACGTAATATGGCAAACGATGCACTCTGTGCTGTTTTACACGCCAACTTCTTCAGAAACCGGAAGCACTTG
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19470477 194 - 122678785 CACATTCTTGATCAGACACATTCCCAAAGCACCTGGGCTCCATGGCT-CCTCCATGGGGT----CTGCCCAAACCAGACAAC-ACAATCTCATCCCCATTCTTCACAAAACTCCACCATCGTTTTTCATTATGTAAAATGATAAATGACGCATCTGTAGCTGTTTTACTCATCAGCTTTTCCTGAACCCAGGAGGAGCTT
i canFam3.chr1              I 1 C 0
e ponAbe2.chr19              55827939  35 +  60714840 I
e calJac3.chr22              45312193 422 +  49145316 I
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=26254.000000
s hg38.chr19_GL949751v2_alt     24978 28 +   1002683 AGAGGTTATCTCCCCTCATCCTCCACCC
s panTro4.chr19              58961687 28 +  63644993 AGAGGTTATCTCCCCTCATCCTCCACCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102594679 28 - 106955855 AGAGGTTATCTCCCCTCATCCCCCACCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884120 28 +  64156825 AGAGGTTATCTCCCCTCATGCCCCACCC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022556 28 +  51301725 AGAGGTTATCTCCCCTCATGCCCTACCC
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45312615 20 +  49145316 agaaGTTACCTCCC--------CAACCC
i calJac3.chr22             I 422 C 0
s canFam3.chr1               19470671 12 - 122678785 AGCGGTCATCTG----------------
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55827939 35 +  60714840 I
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=90076.000000
s hg38.chr19_GL949751v2_alt     25006 46 +   1002683 CCCAAAACACAGCAGTTTCCCCAATAACATTGAGAAAATGGGCTTT
s panTro4.chr19              58961715 46 +  63644993 CGCAAAACACAGCAGTTTCCCCAATAACATTGAGAAAATGGGCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55827974 46 +  60714840 CCCAAAACCCAGCAGTTTCCCCAATAACATTGAGAAAATGGGCATT
i ponAbe2.chr19             I 35 C 0
s nomLeu3.chr10             102594707 45 - 106955855 -TCAAAACACAGCAGTTTCCCCAATAACATTGAGAAAATGGGCATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884148 46 +  64156825 CCGAAAACACAGCAGTTTCCCCAATAACATTGAGAAAATGGCCATT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47022584 44 +  51301725 CCGAAA--ACAGCAGTTTCCCCAATAACATTGAGAAAATGGCCATT
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45312635 46 +  49145316 CCCAAAACACAGCAGTTTCCCCAATAACATTGAGAAAGTGGGCATT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19470683 46 - 122678785 CCAGAAAGGCAGTCATTCTCCCAATCACATTGAAAAAACAGGCATC
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=241347.000000
s hg38.chr19_GL949751v2_alt     25052 137 +   1002683 AAAG---TTCTTCTAggccgggtgcggtggctcatgcctgtaatcccaacactttgagaggccgaggcgggggaattgcttgaggtcaggagtttgataccagcctggccaacatggtgaaaccccatctctactaaaaa
s panTro4.chr19              58961761 137 +  63644993 AAAG---TTCTTCTAggccgggtgcggtggctcacgcctgtaatcccaacactttgagaggccgaggcggggaaattgcttgaggtcaggagtttgataccagcctggccaacatggtgaaaccccatctctactaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828020 137 +  60714840 AAAG---TTTTTTTAggccgggtgcggtggctcacgcctgtaatcccagcactttgagaggccgaggagggggaattgcttgaggtcaggagtttgataccagcctggccaacatggtgaaaccccatctctactaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594752 140 - 106955855 AAAGTTCTTCTTCTAggccgggtgtggtggctcacgcctgtaatcccaacactttgagaggccgaggcaggggaattgcttgaggtcaggagtttgataccagcctggccaacatggtgaaaccccatctctactaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884194 140 +  64156825 AAAGTTCTTCTTGTAggccgggtgcggtggctcacacctgtaatcccaacattttgagaggccaaggcaggggaattgcttgaggtcaggagtttgataccagcctggccaacatggtgaaactccatctctactaaaaa
i rheMac3.chr19             C 0 M 85
s papAnu2.chr19              47022628 140 +  51301725 AAAGTTCTTcttgtaggccgggtgcggtggctcacacctgtaaccccaacattttgagaggccaaggcaggggaattgcttgaggtcaggagtttgataccagcctggccaacatggtgaaactccatctctacttaaaa
i papAnu2.chr19             C 0 I 4
s calJac3.chr22              45312681 140 +  49145316 AAAGTTCTTCTTGTGggccgggtgcagtggcttgcgcccataatcccaacgcttttagaggctgaggtgggggaattggttgaggtcaggagattgataccagcctggccaacatggtgaaaccctgtctttactaaaaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470729   0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=-1219.000000
s hg38.chr19_GL949751v2_alt     25189 13 +   1002683 caaaaaac------------------------------------------------------------aaaaa-
s panTro4.chr19              58961898 13 +  63644993 caaaaaac------------------------------------------------------------aaaaa-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828157 13 +  60714840 caaaaaac------------------------------------------------------------aaaaa-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594892 12 - 106955855 caaaaaa-------------------------------------------------------------aaaaa-
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47022772 73 +  51301725 aaaaaaatgagctgggtttagtggtgggttcctgtaatcccagttattcaggaggaatatctctactaaaaat-
i papAnu2.chr19             I 4 C 0
s calJac3.chr22              45312821 13 +  49145316 -aaaaaaa------------------------------------------------------------aAAAAA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470729  0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59884334 85 +  64156825 M

a score=135799.000000
s hg38.chr19_GL949751v2_alt     25202 175 +   1002683 acaaaactgagctggatatggtggtgggtgcctgtaatcccagctattcgggaggccgaggcaggagaattgcttgaacccagaacccaggaagtggaggttgcagtgagctgagattgtgccacttcacgccaccctgggggacagaacaagactctttctcaaaa-aaataaaT
s panTro4.chr19              58961911 175 +  63644993 acaaaactgagctggatatggtggtggatgcctgtaatcccagctattcgggaggccgaggcaggagaattgcttgaacccagaacccaggaagtggaggttgcagtgagctgagattgtgccacttcacgccaccctgggggacagaacaagactctttctcaaaa-aaataaaT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828170 175 +  60714840 acgaaactgagctggatatggtggtgggtgcctgtaatcccagctattcgggaggccaaggcaggagaattgcttgaacccagaacccaggaagtggaggttgcagtgagctgagattgcgccacttcatgccagcctgggggacagaacaagagtctgtctcaaaa-aaataaaT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102594904 173 - 106955855 acaaaactgagctggatatggtggtgggtgcctgtaatcccagctattcgggaggccgaggcaggagaattgcttgaacccagaacccaggaagtggaggttgcagtgagctgagattgtgccacttcacgccagcctgggggacagaacgaga--ctgtctcaaaa-aaataaaT
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47022845 169 +  51301725 acaaaaattagctgggcatggtggtgtgtgcctgtagtcccagctactcgggaggctaaggcaggagaatcgcct-------gaacccgggaggcaaaggttgcagtgagcaaaggtcgcaccactacactccagcctgggcgacagagcgagactccgtctcaaaataaataaat
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19470729   0 - 122678785 C
e calJac3.chr22              45312834   0 +  49145316 C
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59884334  85 +  64156825 M

a score=1365.000000
s hg38.chr19_GL949751v2_alt     25377 1 +   1002683 A
s panTro4.chr19              58962086 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828345 1 +  60714840 A
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595077 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47023014 1 +  51301725 a
i papAnu2.chr19             C 0 I 502
s calJac3.chr22              45312834 1 +  49145316 A
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470729 0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59884334 85 +  64156825 M

a score=165198.000000
s hg38.chr19_GL949751v2_alt     25378 229 +   1002683 ggccgtgtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcac--aaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggtgcgtgcctgtagtcccagctattcgggaggctgaggcaggaaaattgcttgaatc-------cgggaggcgaaggttgcagtgagct
s panTro4.chr19              58962087 229 +  63644993 ggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcac--aaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctaccaaaaatacaaaaattagctgggtgtggtggcgcgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaatc-------cgggaggcgaaggttgcagtgagct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828346 229 +  60714840 ggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcac--gaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtcccacatgcctgtagtcccagctactccggaggctgaggcaggagaattgcttgaatc-------cgggaggcgaagtttgcagtgagct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595078 229 - 106955855 ggccgggtgcagtggctcacacctgtattcccagcactttgggaggctgaggtgggcagatcac--gaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcacacacctgtagtcccagctacttgggaggctgagtcaggagaattgcttgaacc-------tgggaggcgaaggttgcagtgagct
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45312835 228 +  49145316 ATccaggtatagtggctcatgcctgtaattccagc-cttcaagaggattc-----ccaaatcaccagaggttggga-ttcaagaccaccctgagcaacatggagaaaccccatctctattaaaaatac-aaaattaaccaggcagggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccagaacacagaaggcggaggttgtagtgag--
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19470729   0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M
e rheMac3.chr19              59884334  85 +  64156825 M

a score=51799.000000
s hg38.chr19_GL949751v2_alt     25607 46 +   1002683 gagattgcgccactgtactccagccttggtgacaaagcgagactct
s panTro4.chr19              58962316 46 +  63644993 gagattgcgccactgtactccagccttggtgacaaagtgagactct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828575 46 +  60714840 gagattgtgccactgtactccagcctgggtgacaaagcgagaccct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595307 46 - 106955855 gagattgcaccactgcactccagcctgggtgacaaagcgagactct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884420 46 +  64156825 gagactgcaccactgcactccagcctgggtgacagagcgagtctcc
i rheMac3.chr19             M 85 C 0
s calJac3.chr22              45313063 43 +  49145316 ---atcatgccacttcactccagcctgggtgacagagcgagactcn
i calJac3.chr22             C 0 I 10
e canFam3.chr1               19470729  0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=18590.000000
s hg38.chr19_GL949751v2_alt     25653 28 +   1002683 atctcaaaaaacaaacaaacaaacaaac
s panTro4.chr19              58962362 28 +  63644993 atctcaaaaaacaaacaaataaataaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828621 28 +  60714840 atctcgaaaaataaacaaacaaacaaac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595353 28 - 106955855 atctcaaaaaacaaacaaacaaataaat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884466 24 +  64156825 atctcaaaaaataaataaataaat----
i rheMac3.chr19             C 0 C 0
e canFam3.chr1               19470729  0 - 122678785 C
e calJac3.chr22              45313106 10 +  49145316 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=6156.000000
s hg38.chr19_GL949751v2_alt     25681 12 +   1002683 aaacaaa-TAAA------T
s panTro4.chr19              58962390 14 +  63644993 aaataaa-taaa----aat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828649 18 +  60714840 aaataaa-TAAATAAAAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595381 14 - 106955855 aaataaa-TAAA----AAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884490  9 +  64156825 -----aa-taaa----aat
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45313116 15 +  49145316 aaTTAAATTCAA----AAT
i calJac3.chr22             I 10 C 0
e canFam3.chr1               19470729  0 - 122678785 C
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=404591.000000
s hg38.chr19_GL949751v2_alt     25693 305 +   1002683 AAAGTTCTCCTTGTGCACTTT-AAGCAAA-GGTGA---------TCATGAAGCAGATCTCATTGGGAAAAACATCTCCTTTCTAATTATCTTA-CCTGTTTTCATTGAGGGAGCTT-CAAGTTCATCGTGTTTATCTAGAAAATAGGAGGGAAGAAAAGG-AATTACACTAATCATACAG-GAACCTTGGGGACAGGAGTCCTCACGTCCTACTTATAGACATCCTGTTCTTCTTTGGGAAGCAGAAAAGAGAATGGCTTCTCCATTCCCTAGATGCTCCCTGGGTCCTCAGAGCATGGACAGAGCCTCAGATT-ACTCTT
s panTro4.chr19              58962404 305 +  63644993 aaaGTTCTCCTTGTGCACTTT-AAGCAAA-GGTGA---------TCATGAAGCAGATCTCATTGGGAAAAACATCTCCTTTCTAATTATCTTA-CCTGTTTTCATTGAGGGAGCTT-CAAGTTCATCGTGTTTATCTAGAAAATAGGAGGGAAGAAAAGG-AATTACACTAATCATACAG-GAACCTTGGGGACAGGAGTCCTCACGTCCTACTTATAGACTTCCTGTTCTTCTTTGGGAAGCAGAAAAGAGAATGGCTTCTCCATTCCCTAGATGCTCCCTGGGTCCTCAGAGCATGGACAGAGCCTCAGATT-ACTCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828667 301 +  60714840 AAAGTTCTCCTTGTGCACTTT-AAGCAAA-GGTGA---------TCATGAAGCAGATCTCATTGGGAAACACAT---CTTTCTAATTATCTTA-CCTGTTTTCATTGAGGGAGCTT-CAAGTTCATCGTGTTTATCTAGAAAATAGGAGGGAAGAAAAGG-AATTACACTAATCATACAG-GAACCTTGGGGACAGGAGTCCTCACGTCCTACTTACAGACTTCCTG-TCTTCTTTGGGAAGCAGAAAAGAGAATGGCTTCTCCATTCCCTAGATGCTCCCTGGGTCCTCAGAGCATGGACAGAGCCTCAGATT-ACTCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595395 313 - 106955855 AAATTTCTCCTTGTGCACTTT-AAGCAAA-GGTGATCCCCCATCTCATGAAGCAGATCTAATTGGGAAAAACATCTCCTTCCTAATTCTCTTA-CCTGTTTTCATTGAGGGAGCTT-CAAGTTCATCGTGTTTATCTAGAAAATAGGAGGGAAGAAAAGG-AATTACGCTAATCATACAG-GAACCTTGGGGACAGGAGTCCTCACGTCCTACTTATAGACTTCCTG-TCTTCTTTGGGAAGCAGAAAAGAGAATGGCTTCTCCATTCCCTAGATGCTCCCTGGGTCCTCAGAGCATGGACAGAGCCTCAGATT-ACTCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884499 311 +  64156825 aaAGTACTCC-TGTGCACTTT-AAGCAAA-GGTGATCCAGCGTCTTATGAAGCAGATCTAATTGGAAAAAA-ATCTCCTTTCTAATTATCTTA-CCTGTTTTCATTGAGGGAGCTT-CAAGTTCATCGTGTTTATCTAGAAAATAGGAGGGAAGAAAAGG-AATTATGCTAATCACATAG-GAACCTTGGGGGCAGGAGTCCTCTCGTCCTACTTACAGACTTCCTG-TCTTCTTTGGGAAGCAGAAAAGAGAATGGCTTCTCCATTCCCTAGGTGCTTCCTGAGTCCTCAGAGCATGGACAGAGCCTCAGATT-ACTCTT
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45313131 313 +  49145316 AAAGTCGTCGTGTCCCACCTTAAAGTAAATGGCGATCCTTGTACTTATGCAGCAGATCTAATCGGGAAATACAACTCCTTTCTAATCATCTTACCCTGTTTTCATCGAGGGAGCTTCCAATTTCATCGTGTTTATCTGGAAAACGGAAGGGAAGACAAGG-AATGAGGCTAATCATATGG-GACCATTGTGGGCAGGCGTCCTCACGTCCTCCTTACTGACTTCCTG-CCCTGTTTGGGAAGCAGAAAAGA-----GTTTCTCCATTCCCTAGATGCTCCCTGGGTCCTCAGACCGGGGACAGAGCCTCAGATTAACTCTT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19470729 307 - 122678785 AAGATTCCTTCTGTGCCTTTT-AATCACA-GGGGACTGCCTGCTGCATGAGGTAAATATAATTTGGAAAAACAT---CACTCAAATTATCTTA-CATTTTTTTGCTGCAGGAGCTC-CACGTCCATCATCGTTATCTAGGAAACAGGATGCAAGAAAAAATAATCACAATGATTGAGTGGAGAACCTTGGGCACTTAGGTCCTCATGTTCTTCTTATGGACTTTAGC-CCCTCTTTGGGAACT-----GGAGAATGTCTTTTCTACTCTTGGGATGTTCACTGGGTCCCCAAATCAGGGCCAGAATATTAGATA-GCTTTT
i canFam3.chr1              C 0 I 2753
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=25114.000000
s hg38.chr19_GL949751v2_alt     25998 20 +   1002683 CTTAATAGTCCTGGAGTTTG
s panTro4.chr19              58962709 20 +  63644993 CTTAATACTCCTGGAGTTTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828968 20 +  60714840 CTTAATACTCCTGGAGTTTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595708 20 - 106955855 CCTAATACTCCTGGAGTTTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59884810 20 +  64156825 CCTAATACTCATGGAGTTTG
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45313444 20 +  49145316 CCTAATACTCCTGGAGTTTG
i calJac3.chr22             C 0 I 604
e canFam3.chr1               19471036 2753 - 122678785 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=293891.000000
s hg38.chr19_GL949751v2_alt     26018 266 +   1002683 ATAGTATTTTTAATAACAAAAATATTTATGAATGACCCTGCTAACG--CCCCCTCCAGTTTGATTCCTTGCCAGTCTTCTCTATCTTGACAAAGAA---CACCATTCACCCAAAttctttctttct-------------tttattttttttg----agtcttgcactgttacccaagctggagtgcagtggcatgatctcagctcactgcaacctccgcctccc-gggttcaagagattctcctgcctcagccttccaagtagctgggactacaggcgcccgccaccac
s panTro4.chr19              58962729 266 +  63644993 ATAGTATTTTTAATAACAAAAATATTTATGAATGACACTGCTAACG--CCCCCTCCAGTTTGATTCCTTGCCAGTCTTCTCTATCTTGACAAAGAA---CACCATTCACCCAAAttctttctttct-------------tttattttttttg----agtcttgcactgttacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctccc-aggttcaagagattctcctgcctcagccttccaagtagctgggataacaggtgcctgccaccac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55828988 270 +  60714840 ATAGTATTTTTAATAACAAAAATATTTATGAATGACACTGCTAACG--CCCCCTCCAGTTTGATTTCTTGCCAGTCTTCTCTATCTTGACAAAGAA---CCCCATTCACCCAAAttctttctttct-------------ttttttttttttttttcagtcttgcactgttacccaggctggagtgcagtggcatgatctcagctcactgcaacctccacctccc-gggttcaagagattctcctgcctcagccttccaagtagctgggattacaggtgcctgccaccac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102595728 262 - 106955855 ATAGTATTTTTAATAACAAAAATATTTATGAATGACACTGCTAACG--ACCCCTCCAGTTTGATTCCTTGCCAGTCTTCTCTATCTTGACAAAGAA---CACCATTCACCCAAAttctttcttttt-----------------ttttttttg----agtcttgcactgttacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcct-gggttcaagagattctcctacctcagccttcaaagtagctgggattacaggtacctgccaccac
i nomLeu3.chr10             C 0 I 1525
s rheMac3.chr19              59884830 259 +  64156825 CTAG------------------TATTTATGAATGACACTGCTAACG--CCCCCTCCAGTATGATTCCTTGCCAGTCGTCTTTATCTTGACAAAGAA---CGCCATTCACCCAAATTCTTTCtttctttc--tttcttttttttttttttttg----agtcttgcattgtcacccaggctggagtacagtgacatgatctcagcccacagcaacctccgcctcct-gggtttaagagattctcctgcctcagccttccaagtagctgggattacaggcacctgccaccac
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45314068 289 +  49145316 ATAGTATTTTTAATAACAAAAATATTTATGTATGACCCTGCTAATGCCCCCCCTCCAGTTTGATTGCCTATTAGTCTTCTCTGTCTTGACAAAGAATACCACCATTCACCCAAATTCTTAtttttttttaatatcttttttgtttttttttaggacagtctcacactgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacttccaacttctggggttcaagcagttctcctaattcagcctcccaagtagctgggattacaggtaagtgccaccag
i calJac3.chr22             I 604 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=3910.000000
s hg38.chr19_GL949751v2_alt     26284 4 +   1002683 accc
s panTro4.chr19              58962995 4 +  63644993 accc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55829258 4 +  60714840 accc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59885089 4 +  64156825 accc
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45314357 4 +  49145316 accc
i calJac3.chr22             C 0 I 308
e canFam3.chr1               19471036 2753 - 122678785 I
e nomLeu3.chr10             102595990 1525 - 106955855 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=108669.000000
s hg38.chr19_GL949751v2_alt     26288 128 +   1002683 tgctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatcaacctgccttggccactcagaatactgggattccaggcatgagccac
s panTro4.chr19              58962999 128 +  63644993 tgctaatttttgtatttttggtagagacagggtttcaccatgttggccaggctggtctcaaactcctggccttaagtgatcaacctgccttggccactcagaatactgggattccaggcatgagccac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55829262 128 +  60714840 tgctaatttttgtatttttagtagagacggggtttcaccatgttggccagcctggtctcaaactcctggcctcaagtgatcaatctgccttggccactcagaatgctgggattccaggcatgagccac
i ponAbe2.chr19             C 0 M 656
s rheMac3.chr19              59885093 128 +  64156825 tgctaatttttgtaattttagtagagacagagtttcaccatggtggccaggctggtctcaaactcctggcctcaagtgatcaacctgccttggccactcaaaatgctgggattccaggcatgagccac
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45314669 128 +  49145316 tgctaatttttgtatttttagtagagacagagtttcaccatgttggccaggctggtcttaaacttcaggcctcaagtgatcaacctgccttggtttcccaaagtgctgggattacaggcatgagccaa
i calJac3.chr22             I 308 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e nomLeu3.chr10             102595990 1525 - 106955855 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=32277.000000
s hg38.chr19_GL949751v2_alt     26416 66 +   1002683 tgcacctggccTATATTTCTATCTCCACAGTGGCACCATTTAGTCTAAGTTAAAATATCACCTACT
s panTro4.chr19              58963127 66 +  63644993 tgcgcccggccTATATTTCTATCTCCACAGTGGCACCATTTAGTCTAAGTTAAAATATCACCTACT
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59885221 66 +  64156825 tgcactcggccTATATTTCTATCTCCCCAGTGGCACCATTTAGTCTAAGTTAAAATATCACCTACT
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45314797 66 +  49145316 tgcacctggccTGTATTTCTGTCTCACCAGTGGCACCACTTGGTCTGATTTAAAATATCACCTACT
i calJac3.chr22             C 0 I 3697
e canFam3.chr1               19471036 2753 - 122678785 I
e ponAbe2.chr19              55829390 656 +  60714840 M
e nomLeu3.chr10             102595990 1525 - 106955855 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=37115.000000
s hg38.chr19_GL949751v2_alt     26482 156 +   1002683 Tggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaagttagccgagcgtggtggcgggcc
s panTro4.chr19              58963193 156 +  63644993 Tggccgggcgtggtggctcacgcctgtaaccccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaagttagccaagcgtggtggcgggcg
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59885287 155 +  64156825 CAgccaggtacggtggctcaggcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtaaagagattgagaccatcctggataacatggtaaaaccctgtctctactaaaaatacaaaaa-ttagccaggcatggtggtgggcg
i rheMac3.chr19             C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e ponAbe2.chr19              55829390 656 +  60714840 M
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102595990 1525 - 106955855 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=151114.000000
s hg38.chr19_GL949751v2_alt     26638 320 +   1002683 cctgtagtcccagctactcgggaggctgaggcaggag-aatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgagggacagagccagactccgtctcaaaaaaaaaataaaaataaaaataaaa----atGAAATGAAatatcacctactcaccagtccctggcaaccaccagt--------tgcttctgtgagtttggcttttttagactacacatatgagtgagatcctgcagaatttgtctttctgagtctggcttattttgtttagcatgatatatgcggagatgttgatgaaagggta
s panTro4.chr19              58963349 332 +  63644993 cctgtagtcccagctactcgggaggctgaggcaggag-aatggtgtgaacccgggaggcagagcttgcagtgagctgagatcgcaccactgcactccagcctgagtgacagagccagactccgtctcaaaaaaaataaataaataaaaataaaaTGAAATAAAATAAAatatcacctactcaccagtccctggtaaccaccagtatactctctgcttctgtgagtttggcttttttagactacgcatatgagtgagatcctgcagaatttgtctttctgagtccggcttattttgtttagcatgatatatgcggagatgttgatgaaagggta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55830049 329 +  60714840 cctgtagtcccag-tactctggaggctgaggcaggagaaatgcaatgaacttgtgagacagagcttgcagtgagctgagattgcaccactgcactccagcctgggcgacagagccagactccgtctcaaaaaaaataaataaataaaaataaaataaaat---ataaaatatcacctactcaccagtccctggcaaccaccagtatactctctgcttctgtgagtttgggtttcttagactacacatatgagtgagatcctgcagaatttgtctttctgagtctggcttattttgtttagcacgatatatggggacatgttgatgaaagggta
i ponAbe2.chr19             M 656 C 0
s rheMac3.chr19              59885442 320 +  64156825 cctgtagtcccagctacttgggaggctgaggcaggag-aatggcgtgaacctgggaggccgagcttgcagtgagctgagatcgcaccactacactccagcctgggcgacagagcgagactccgtctcaaaataaataaataaataaaaataa-----------ataaaGTAtcacctactcaccagtccctggcaaccaccagtagactctctgcttctgtgagtttggctttttcaggccacacatgtgagtgagatcatgcagaatttgtctttctgagtctggcttattttgtttaacataatgtatggggagatGTTGATGAAA-GGTA
i rheMac3.chr19             C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102595990 1525 - 106955855 I
e chlSab2.chr6               46735319 352 +  50890351 I
e papAnu2.chr19              47023015 502 +  51301725 I
e macFas5.chr19              54882420 20327 +  59248254 M

a score=8823.000000
s hg38.chr19_GL949751v2_alt     26958 5 +   1002683 taagt
s panTro4.chr19              58963681 5 +  63644993 taaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55830378 5 +  60714840 taaat
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59885762 5 +  64156825 TAAAT
i rheMac3.chr19             C 0 I 311
s macFas5.chr19              54903304 5 +  59248254 TAAAT
i macFas5.chr19             M 20327 C 0
s papAnu2.chr19              47023517 5 +  51301725 taaat
i papAnu2.chr19             I 502 C 0
s chlSab2.chr6               46735671 5 +  50890351 TAAAT
i chlSab2.chr6              I 352 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102595990 1525 - 106955855 I

a score=1854538.000000
s hg38.chr19_GL949751v2_alt     26963 1074 +   1002683 ttccagttctaagatgaagaagttcaggtgctcagcatggtggcaatggatgtgctaattaatttgactgtgataatcattacacaatgtacaggtggatcaaatcatcagattgtataccttgaatatatacaatcttcatttgtcaatttgatatttttaaatttaaaaaGTCGTATTGCCTGAAACGCACCAACTCTTACTACATCTAGTCCCTTATTTTCCAAAAGCAGCCAGAGgccgggcatgatggcctgtgcctgtaatctcagatgcttgggaggctgaggtg------------------------------ggaggattacctgggcctgggaggtcaaggctgcagtgagctgtgattgca-------------------------------------------ccactgcactccagcctgggcaaccgagtgggaccctgtctcaaaaaaaaaaaaaaaaaaaaaa----gcagccagtgacccttccagcatataaataaaatcatgccatcctccagctcaacttcatcagtgggttcctgttctttcaaagcagactctaggaccagttcaaacacccacaagatcctagatgctctaggccctgcct---------------------------------tatgtcctcctttctgtgtctcaatcattccaggaacactcacacttctgagactttgcttttgctgctctctctccctggagggctgttctccagatatcggtgtggttgggtcattctcatccttcaTGCTtgtggcagatagaccctaagggggcactcaggagactcaggagccctgcttcctggtgttcatgcctttgtctaatcccctcaccttgagtgtggagatctgtgactttcttctcaccaatagctatggcaaaggtgatgggatgttatgctcttgattatgttacattacataaaactctgtttgctagggcatttgctctctctttcttct--ctctctctcaatctctcttcttgcaagtgctgcagaatcattctagcatgaatcctacagctataaagaaccagatattgctatcaaccacaggagtggagaaatggacccttccccagtcaagcctccagatgagccagatgagaacacagcccttgttgacaccttgattgcatcctt
s panTro4.chr19              58963686 1077 +  63644993 ttccagttctaagatgaagaagttcaggggctcagcatggtggcaatggatgtgctaattaatttgaccgtgataatcattacacaatgtacaggtggaacaaatcatcagattgtataccttgaatatatacaatcttcatttgtcaatttgatatttttaaatttaaaaaGTCATATTGCCTGAAATGCACCAACTCTTACTACATCTAATCCCTTACTTTCCAAAAGCAGCCAGAGgccgggcatgatggcctgtgcctgtaatctcagctgcttgggaggctgaggtg------------------------------ggaggattacctgggcctgggaggtcaaggctgcagtgagctgtgatcgca-------------------------------------------ccactgcactccagcctgggcaaccgagtgggaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaagcagccagtgaccgttcaagcatataaatcaaatcatgccatcctccagctcaacttcatcagtgggttcctgttctttcaaagcagactctaggaccagttcaaacacccacaagatcctagatgctctaggccctgcct---------------------------------tatgtcctcctttctgtgtctcaatcattccaggaacactcacacttctgagactttgcttttgctgctctctc-ccctggagggctgttctccagatattggtgtggttgggtcattctcatccttcaTGCTtgtggcagatagaccctaagggggcactcaggagactcaggggccctgcttactggtgttcatgcctttgtctaatcccctcaccttgagtgtggagatctgtgactttcttctcaccaatagctatggcaaaggtgatgggatgttatgctcttgattatgttacattacataaaactctgtttgctagggcatttgctctctctttcttct--ctctctctcaatctctcttcttgcaagtgctgcagaatcagtctagcatgaatcctacagctgtaaagaaccagatattgctagcaaccacaggagtggagaaatggacccttccccagtcaagcctccagatgagccagatgagaacacagccctggttgacaccttgattgcatcctt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55830383 1060 +  60714840 ttccagttctaagatgaagaagttcaggtgcccagcatggtgacaatggatgtgctaattaatttgactgtgataatcattacacaatgtacaggtggatcaaatcatcagattgtataccttgaatatatacaatcttcttttgtcaatttgatatttttaaatttaaaaaGTTGTATTGCCTGAAATGCACCAACTCTTACTACATCTAATCCCTTATTTTCCAAAAGCTGCCAGAGgccgggcatgatggcatgtgcctgtaatctcagctgcttggggggctgaggtg------------------------------ggaggattacctgggcctgggaggtcaaggctgcagtgagctgtgatcaca-------------------------------------------ccactgcactccagcctgggcaacggagtgagaccctgtctcaaaaaaaaaaaaaaaaaaa-------gtagccagtgacccttcaagcatgtaaataaaatcatgccatcctccagctcaacttcatcagtgggttcctgttctttcaaagcagactctaggaccagttcaaacacccacaagatcctagatgctctaggccctgcct---------------------------------tctgtcctcctttctgtgtctcaatcattccaggaacactcacacttgtgagactttgattttgctgctctctctccctggagggctgttctccagatatcggtgtggttgggtgattctcatccttcatgtctgtggcagatagaccctaagggggcactcaggagactcaggagccctgcttcctggtgttcatgcctttgtctaatcccctcaccttgagtgtggagacctgtgactttcttctcaccaatagctatggcaaaggtgatgggatattatgctcttgattatgttacattacataaaa--ctgtttgctagggcatttgctctctctttcttct--ctctctctcagtctctcttcttgcaagtgctgcagaatcagtctagcatgaatcctacagctgtaaagaaccagatattgctagcaaccacaggagtggagaaatggacccttccccagtcaagcct---------ccagatgagaacacagccctggttgacaccttgattgcatcctt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59886078 1081 +  64156825 TTCCAGTTCTAAGATGAAGAAGTTCAGGTGCACAGCATGGTggcaatggatgtgctaattaatctgactgtgatcatcattacataatgtatagatggatcaaatcatcagattgtatatcttgaatatatacaatcttcatttgtcaattTGATATTTTTAAATTTAAAAAGTCATATTGCCTGAAATGCACCAACTCTTACCACATCTGATCCCTTATTTTCCAAAAGCAGCCAGAGgccaggcatgatggcatgtgcctgtaatctcagctgcttgggaggctgaggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncc-----------------gaaa-------------------aaaaaaaaaaaaaaaaaaaaa-----gcagccagtgacccttcaagcatataaataaaatcatgccattctccagttcaacttcatcagtgggttcctgttttttcaaagcagactctaggaccagttcaaacacccacaagaccctagatgctctaggccctgtcttctatccacaccttttattctgctgttcttttctctgtcctcctttctgtgtctcaatcattccaggaacactcacacttctgggactttgcttttgctgctctctctccctgaagggctcttctccagatatcgatgtggttgggtcattctcatatttcaTGCCtgtgacagatagaccttaagggggcactcaggagactcaggagccctgctttctggtgttcatgcccttgtctaatctcctcaccttgagtgtggagacctgtgactttcttctcaccaatagatatggcaaaggtgatgggatgttatgctcttgattatgctacattacataaaactctgtttgctagggcatttgctctctctctctctc----ctctctcaatctctcttcttgcaagtgctgcagaatcagtctaacatgaatcctacagctgcaaagaaccagatgttgctagcaaccacaggagtggagaaatggacccttccccaatcaagcct---------ccagatgagaacccagccctggatgacaacttgattgcatcctt
i rheMac3.chr19             I 311 C 0
s macFas5.chr19              54903309 1092 +  59248254 TTCCAGTTCTAAGATGAAGAAGTTCAGGTGCACAGCATGGTggcaatggatgtgctaattaatctgactgtgatcatcattacataatgtacagatggatcaaatcatcagattgtatatcttgaatatatacaatcttcatttgtcaattTGATATTTTTAAATTTAAAAAGTCATATTGCCTGAAATGCACCAACTCTTACCACATCTGATCCCTTATTTTCCAAAAGCAGCCAGAGgccaggcatgatggcatgtgcctgtaatctcagctgcttgggaggctgaggtg------------------------------ggaggattacctgggcctgggaggtcaatgctgcagtgagctgtgattgca-------------------------------------------ccattgcactccagcctgggcaacagagtgag---ctgtctcgaaaaaaaaaaaaaaaaaaaa-----gcagccagtgacccttcaagcatataaataaaatcatgccattctccagttcaacttcatcagtgggttcctgttttttcaaagcagactctaggaccagttcaaacacccacaagaccctagatgctctaggccctgccttctatccacaccttttattctgctgttcttttctctgtcctcctttctgtgtctcaatcattccaggaacactcacacttctgggactttgcttttgctgctctctctccctgaagggctcttctccagatatcgatgtggttgggtcattctcatatttcatgcctgtgacagatagaccttaagggggcactcaggagactcaggagccctgctttctggtgttcatgcccttgtctaatcccctcaccttgagtgtggagacctgtgactttcttctcaccaatagatatggcaaaggtgatgggatgttatgctcttgattatgctacattacataaaactctgtttgctagggcatttgctctctctctctctc----ctctctcaatctctcttcttgcaagtgctgcagaatcagtctaacatgaatcctacagctgcaaagaaccagatattgctagcaaccacaggagtggagaaatggacccttccccaatcaagcct---------ccagatgagaacccagccctggatgacaacttgattgcatcctt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47023522 1094 +  51301725 TTCCAGTTCTAAGATGAAGAAGTTCAGGTGCACAGCATGGTGGCAATGGATGTGCTAATTAATCTGCCTGTGATCATCATTACATAATGTACAGATGGATCAAATCATCAGATTGTAtatcttgaatatatacaatCTTCATTTGtcaatttgatatttttaaatttaaaaagtcatattgcCTGAAATGTACCAACTCTTACCACATCTAATCCCTTATTTTCCAAAAGCAGccagaggccaggcatgatggcatgtgcctgtaatctcagctgcttgggaggctgaggtg------------------------------ggaggattacctgggcctgggaggtcaatgctgcagtgagctgtgatcgca-------------------------------------------ccattgcactccagcctgggcaacagagtgagaccctgtctcggaaaaaaaaaaaaaaaaaaa-----gcagccagtgACCCTTCaagcatataaataaaatcatgccattctccagttCAACTTCATCAGTGGGTTCCTGTTTTTTCAAAGCAGACTCTAGGACCAGTTCAAACACCCACAAGACCCTAGATGCTCTAGGCCCTGCCTTCTATCCACACCTTTTATTCTGCTGTTCTTTTCTCTGTCCTCCTTTCTGTGTCTCAATCATTCCAGGAACACTCACACTTCTGGGACTTTGCTTTTGCTGCTGTCTCTCCCTGAAGGGCTCTTCTCCAGATATTGATGTGGTTGGGTCATTCTCATATTTCATGCCTGTGACAGATAGACCTTAAGGGGGCACTCAGGAGACTCAGGAGCCCTGCTTTCTGGTGTTCATACCCTTGTCTAATCCCCTCACCTTGAGTGTGGAGACCTGTGACTTTCTTCTCACCAATagatatggcaaaggtgatgggatgtTATGCTCTTGATTATGCTACATTACATAAAACTCTGTTTGCTAGGGCatttactctctctctcctct----ctctctcaatctctcttctTGCAAGTGCTGCAGAATCAGTCTAACATGAATCCTAAAGCTGCAAAGAACCAGATATTGCTAGCAACCACAGGAGTGGAGAAATGGACCCTTCCCCAATCAAGCC----------CCAGATGAGAACCCAGCCCTGGTTGACAACTTGATTGCATCCTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46735676 1088 +  50890351 TTCCACTTCTAAGATGAAGAAGTTCAGGTGCACAGCATGGTggcaatggatgtgctaattaatctgactgtgatcatcgttacataatgtacagatggatcaaatcatcagattgtatatcttgaatatatacaatcttcatttgtcaattTGATATTTTTAAATTTAAAAAGTCATATTGCCTGAAATGCACCAACTCTTACCACATCTAATCCCTTATTTTCCAAAAGCAGCCAGAGgccgggcatgatggcatatgcctgtaatctcagctgcttgggaggctgaggtg------------------------------ggaggattacctgggcctgggaggtcaaggctgcagtgagctgtgatcgca-------------------------------------------ccactgcactccagcctgggcaacagagtgagaccctgtctcg-----aaaaaaaaaaaaaaa-----gcagccagtgacccttcaagcatataaataaaatcatgccattctccag------ttcatcagtgggttcctgttttttcaaagcagactctaggaccagttcaaacacccacaagaccctagatgctctaggccctgccttctgtccacaccttttattctgctgttcttttctctgtcctcctttctgtgtctcaatcattccaggaacactcacacttctgggactttgcttttgctgctctctgtccctgaagagctcttctccagatatcgatgtggttgggtcattctcatatttcatgcctgtgACAGATAGACCTTAAGGGGGCACTCGGGAGACTCAGgagccctgctttctggtgttcatgcctttgtctaatcccctcaccttgagtgtggagacctgtgactttcttctcaccaacagatatggcaaaggtgatgggatgttatgctcttgattatgctacattacataaaactctgtttgctagggcatttgctctctctctctctcctctctctctcaatctctctTCTTGCAAGTGCTTCAGAATCAGTCTAacattaatcctacagctgcaaagaaccagatattgctagcaaccacaggagtggagaaatggacccttccccaatcaagcct---------ccagatgagaacccagccctggttgacaccttgattgcatcctt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102595990 1525 - 106955855 I

a score=1413945.000000
s hg38.chr19_GL949751v2_alt     28037 608 +   1002683 atgagacccaaagcagaggactcagctaagctgtgcctggactcctgacccacatcaactgtgagataataaataggtgtttcaggctgctaaattagtggtaatttgttatgcagctgtagatcactaatacaATGCCTCTCAcagttattctccatctataatgtgttttttaattactctgatagcttgctcttatttctttctttcttccaaagaagaatgtgagctcctgttggccagagacctggtctgtctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGGGTGAATGGGCAGCTATTTTTGTGCCAGGTATTTTGCATTAATTTTTTTTT--GTAATGGAAGCATTTATATGCCCATTTTgtaataagtaaaaagtagtataataaaaaagtaaaaagtaGTATAATAAAGTGATTTGCAAAGCAGCAAACAGATTGTATATGGAAGGCTGACCTGGAAAATCAACCACTGGAAATTGATACTATAGCCTGTCTTGTGATGTAATGGTACAGCTGCGATAGAGGTGAAGAAATCAGGAAACAGTAGATGATATGCCAGAGAACATAATTGGGAAATGGCAAAT
s panTro4.chr19              58964763 610 +  63644993 atgagacccaaagcagaggactcagctaagctgtgcctggactcctgacccacatcaactgtgagataataaataggtgtttcaggctgctaaattagtggtaatttgttatgcagccgtagatcactaatacaATGCCTCTCAcagttattctccatctataatgtgttttttaattactctgatagcttgctcttatttctttctttcttccaaagaagaatgtgagctcctgttggccagagacctggtctgtctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGGGTGAATGGGCAGCTATTTTTGTGCCAGGTATTTTGCATTAATTTTTTTTTTTGCAATGGAAGCATTTATATGCCCATTTTGTAATAAGTAAAAAGTAGTATAATAAAAAAGTAAAAAGTAGTATAATAAAGTGATTTGCAAAGCAGCAAACAGATTGTATGTGGAAGGCTGACCTGGAAAATCAACCACTGGAAATTGATACTATAGCCTGTCTTGTGATGTAATGGTACAGCTGCGATAGAGGTGAAGAAATCAGGAAATAGTAGATGATATGCCAGAGAACATAATTGGGAAATGGCAAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55831443 584 +  60714840 atgagacccaaagcagaggattcagctaagctgtgcctggactcctgacccacatcaactgtgagataataaataggtgtttcaggctgctaaattagtggtaatttgttatgcagccatagatcactaatacaATGCCTCTCAcacttattctccatctataatgtgttttttaattactctgatagcttgctcttatttatttctttcttccaaagaagaatgtgagctcctgttggccagagacctggtctgtctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGGGTGAATGGGCAGCTATTTTTGTGCCAGGTATTTTGCACTAATTGTTTTT---GTAATGGAAGCATTTATATGCCCATTTTGTAAT-----------------------AAGTAAAAAGTAGTATAATAAAGTGATTTGCGAAGCAGCAAAAAGATTGTATATGGAAGGCTGACCTGGAAAATCAACCACTGGAAATTGATACTATAGCCTGTCTTGTGATGTAATGGTACAGCTGTGATAGAGGTGAAGAAATCGGGAAACAGTAGATGATATTCCAGAGAACATAATTGGGAAATGGCAAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102597515 583 - 106955855 AtgtgacccaaagcagaggactcagctaagctgtgcctagactcctgacccacatcaactgtgagataataaataggtgtttcagtctgctaaattagtggtaatttgttttgcagccatagatcactaatacaATGCCTCTCACAGTTATTTTCCATCTATAATGTGTTTTTTAATTACTCCAATAGCTTGCTCttatttatttatttctttcaaagaagaatgtgagctcctgttggccagagacctggtccatctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGGGTGAACGGACAGCTATTTTTGTGCCAGGTATTTTGCATTAATTTTTTT----GTAATGGAAGCATTTATATGCCCATTTTGTAAT-----------------------AAGTAAAAAGTAGTATAATAAAGTGATTTGCAAAGCAGCAAACAGATTGTATATGGAAGGCTGACCTGGAAAATCAACCACTGGAAATTGATACTATAGCCTGTCTTGTGATGTAATGGTACAGCTGCGATAGAGGTGAAGAAATCAGGAAACAGTAGATGATATGCCAGAGAACATAACTGGAAAATGGCAAAT
i nomLeu3.chr10             I 1525 I 717
s rheMac3.chr19              59887159 581 +  64156825 atgagaaccaaagcagaggactcagctaagctgtgcctggactcctgacccacatcaactgtgaggtaataaataggtgtttcaggcggctaaattagtggtaattagttatgcagccatagatcactaatacaATGCCTCTCAcagttattctccatctataatgtgttttttaattactctgatatctttctg----ttatttctttcttccaaagaagaatgtgagctcctgttggccagagacctggtctgtctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGGCTGAATGGGCAGCTATTTTTGTGCCAGGTATTTTGCATTAAATTTTTTTT--GTAATAGAAGCATTTATATGCCCATTTTGTAAT-----------------------AAGTAAAAAGTAGTATAATCAAGTGATTTGTAAAGCAGCAAACAGATTGTATATGGAAGGCTGACCTGGAAAATCAACCACTTTAAATTGATACTATAGCCTGTCTTGTGATATAATGGTATAGCTGCGATAGAGGTAAAGAAATCAGGAAATAGTAGATGATCTGCCAGAGAACATAATTGGGAAATGGCAAAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54904401 581 +  59248254 atgagaaccaaagcagaggactcagctaagctgtgcctggactcctgacccacatcaactgtgaggtaataaataggtgtttcaggcggctaaattagtggtaattagttatgcagccatagatcactaatacaatgcctctcacagttattctccatctataatgtgttttttaattactctgatatctttctg----ttatttctttcttccaaagaagaatgtgagctcctgttggccagagacctggtctgtctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGGCTGAATGGGCAGCTATTTTTGTGCCAGGTATTTTGCATTAAATTTTTTTT--GTAATAGAAGCATTTATATGCCCATTTTGTAAT-----------------------AAGTAAAAAGTAGTATAATCAAGTGATTTGTAAAGCAGCAAACAGATTGTATATGGAAGGCTGACCTGGAAAATCAACCACTTTAAATTGATACTATAGCCTGTCTTGTGATATAATGGTATAGCTGCGATAGAGGTGAAGAAATCAGGAAATAGTAGATGATCTGCCAGAGAACATAATTGGGAAATGGCAAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47024616 585 +  51301725 ATGAGAACCAAAGCAGAGGACTCAGCTAAGCTGTGcctggactcctgacccacaTCAACTGTGAGGTAATAAATAGGTGTTTCAGGCTGCTAAAttagtggtaatttgttatgcagccatAGATCACTAATACAATGCCTCTCACAGTTATTCTCCATctataatgtgttttttaattacTCTGATATCTTTctgctatttatttctttcttccaaagAAGAATGTGAGCTCCTGTTGGCCAGAGACCTGGTCTGTCTCAGTTCCTACAATATGCTCAGGATCTACCAAAGTATCTGAATTTGTAGGCTGAATGGGCAGCTATTTTTGTGCCAGGTATtttgcattaaatttttttt--gtaatagaaGCATTTATATGCCCATTTTGTAAT-----------------------AAGTAAAAAGTAGTATAATCAAGTGATTTGTAAAGCAGCAAACAGATTGTATATGGAAGGCTGACCTGGAAAATCAACCACTTTAAATTGATACTATAGCCTGTCTTGTGATGTAATGGTATAGCTGCGATAGAGGTGAAGAAATCAGGAAATAGTAGATGATCTGCCAGAGCACATAATTGGGAAATGGCAAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46736764 584 +  50890351 atgagaaccaaagcagaggactcagctaagctgtgcctggactcctgacccacatcaactgtgagataataaataggtgtttcaggctgctaaattagtggtaatttgttatgcagccatatatcactaatacaATGCccctcacagttattctccatctataatgtgttttttaattactctgatatctttctgttctttctttctttcttccaaagaagaatgtgagctcctgttggccagagacctggtctgtctcagttcctacaatatgctcaggatctaccaaagtatctgAATTTGTAGACTAAATAGGCAGCTATTTTTGTGCCAGGTATTTTGCATT-ATTTTTTTTT--GTAATAGAAGCATTTATATGCCCATTTTGTAAT-----------------------AAGTAAAAAGTAGTATAATCAAGTGATTTGCAAAGCAGCAAACAGATTATATATGGAAGGCTGACCTGGAAAATCAACCACTTTAAACTGATACTATAGCCTGTCTTGTGATGTAATGGTATAGCTGTGATAGAGGTGAAGAAATCAGGAAATAGTAGATGATCTGCCAGGGAACATAATTGGGAAATGGCAAAT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I

a score=77884.000000
s hg38.chr19_GL949751v2_alt     28645 44 +   1002683 AATCGCGAGGCTTTTAGGGCTAAAGTGTGGGTGCAGAAATTCTT
s panTro4.chr19              58965373 44 +  63644993 AATCGCCAGGCTTTTAGGGCTAAAGTGTGGGTGCAAAAATTCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55832027 44 +  60714840 AATCACCAGGCTTTTAGGGCTAAAGTGTGGGTGCGAAAATTCTT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59887740 44 +  64156825 AATCGCCAGGCTTTTAGGGCTAAAGTGTGGGAATGAAAATTCTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54904982 44 +  59248254 AATCGCCAGGCTTTTAGGGCTAAAGTGTGGGAATGAAAATTCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47025201 44 +  51301725 AATCGCCAGGCTTTTAGGGCTAAAGTGTGGgaatgaaaattctt
i papAnu2.chr19             C 0 I 15035
s chlSab2.chr6               46737348 44 +  50890351 AATCGCCAGGCTTTTAGGGCTAAAGTGTGGGTACGAAAATTCTT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=310628.000000
s hg38.chr19_GL949751v2_alt     28689 239 +   1002683 AAGACTACAAGAACGAGTTATGGGGAATACAATTTGAAATCAATATCAAAGTGATGAGCACCTTGTTGGAGTATCATTGATCAAGAGCCTCAGAAAGAGGGTAAATCAGAGGTGAAACATTAAGTATTCAGTTACTCATCATGCCCCAAGCCCAGGCTAAGTCATTGGTGTGGACCCACGGCTACTTCTACACTACACTGATGACTGTAAAGTCTCTCCAGGGATTTCCCATGATATGG
s panTro4.chr19              58965417 239 +  63644993 AAGACTACAAGAATGAGTTATGGGGAATACAATTTGAAATCAATATCAAAGTGATGAGCACTTTGTTGGAGTATCATTGATCAAGAGCCTCAGAAAGAGGGTAAATCAGAGGTGAAACATTAAGTATTCAGTTACTCATCATGCCCCAAGCCCAGGCTAAGTCATTGGTGTGGACCCACAGCTACTTCTACACTACACTGATGACTGTAAAGTCTCTCCAGGGATTTCCCATGATATGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55832071 234 +  60714840 AAGACTACAAGAAAGAGTTATTGGGAATACAATTTGAAATCAATATCAAAGTGATGAGCACCTTGTTGGAGCATCATTGATCAACAGCCTCAGAAAGAGGGTAAATCAGAGGTGAAACATTAAGTACTCAGTTACTCATCATGCCCCAAGCCCAGGCTAAGTCATTGGTGTGGACCCATGGCTACTT-----CTACACTGATGACTGTAAGGTCTCTCCAGGGATTTCCCATGATATGG
i ponAbe2.chr19             C 0 M 630
s rheMac3.chr19              59887784 238 +  64156825 AAGACTACAAGAAAAAGTTATTGGGAATACAA-TTGAAATCAACATCAAAGTGATGAGAACCTTGTTGGAGCATCACTGATCAAGAGCCTCAGAAAGAGGGTAAATCAGAGGTGAAACATTAAGTACTCAGTTACTCATCATGCCCCAAGCCCAGGCTAAGTCATTGGTGTGGACCCATGGCTACTTCTGCACTACATTGATGACTGTAAGGTCTCTCCAGGGATTTCCCATGATATGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54905026 238 +  59248254 AAGACTACAAGAAAAAGTTATTGGGAATACAA-TTGAAATCAACATCAAAGTGATGAGAACCTTGTTGGAGCATCACTGATCAAGAGCCTCAGAAAGAGGGTAAATCAGAGGTGAAACATTAAGTACTCAGTTACTCATCATGCCCCAAGCCCAGGCTAAGTCATTGGTGTGGACCCATGGCTACTTCTGCACTACATTGATGACTGTAAGGTCTCTCCAGGGATTTCCCATGATATGG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46737392 239 +  50890351 AAGACTACAAGAAAAAGTTATTGGGAATACAATTTGAAATCAACATCAAAGTGATGAGCACCTTGTTGGAGCATCACTGATCAAGAGCCTCAGAAAGAGGGTAAATCAGAGGTGAAACATTAAGTACTCAGTTACTCATCATGCCCCAAACCCAGGCTAAGTCATTGGTGTGGACCCTTGGCTACTTCTGCACTATACTGATGACTATAAGGTCTCTCCAGGGATTTCCCATGATATGG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47025245 15035 +  51301725 I

a score=238356.000000
s hg38.chr19_GL949751v2_alt     28928 287 +   1002683 CAGGACTGACCTACTGGAAGCAACTGTGGTCAGTTGAGAGGTATTGTTTAGTGACTAATAaatgaatggatga----------------atggatggatggatggatggatggatggatagatggatAggtgggt-gggggtgagtgaatgggtgaaagggtggatgagtggatgaatgggtggaaggatggacaaatgagtggctgggtaaatagatgggtaggtaggtagatagatggatgaaggggtgggtggacagatgaatggaagggttggtggttggatggattaatggatagatga
s panTro4.chr19              58965656 279 +  63644993 CAGGACTGACCTACTGGAAGCAACTGCGGTCAGTTGAGAGGTATTGTTTAGTGACTAATAaatgaatggatga----------------atggatggatggatggatggat--------atatggatAGGTCGGT-GGGGGTGAGtgaatgggtgaaagggtggatgagtggatgaaagggtggaaggatggacaaatgagtggctgggtaaatagatggGTAGGTAGGTAgatagatggatgaaggggtgggtggacagatgaatggaagggttggtggttggatggattaatggatagatga
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59888022 296 +  64156825 CCAGATTGACCTACTGGAAGCAACTGTAGTCAATTGAGAGATATTGTTGAGTGACTAATAAatgaatagatggatggatggatggatgaatggatggatggatggatggat--------atatggataggtgggtggggggtgaatgaatgggtgaaagagtggatgagtggatgagtgggtggaaggatggacaaatgagtggctgggtaaatagatgggtaggtgggtagatagatggatgAAGGGGTGGGTAGACGAATGAATGGAAGGGTTGGTGGTtggatggattaatggatagatga
i rheMac3.chr19             C 0 I 236
s macFas5.chr19              54905264 280 +  59248254 CCAGATTGACCTACTGGAAGCAACTGTAGTCAATTGAGAGATATTGTTGAGTGACTAATAAATGAATAgatgg----------------atggatggatggatggatggat--------ATatggataggtgggtggggggtgaatgaatgggtgaaagagtggatgagtggatgagtgggtggaaggatggacaaatgagtggctgggtaaatagatgggtaggtgggtagatagatggatgaaggggtgggtagacgaatgaatggaagggttggtggttggatggattaatggatagatga
i macFas5.chr19             C 0 I 192
s chlSab2.chr6               46737631 280 +  50890351 CCAGATTGACCTACTGGAAGCAACTGTAGTCAGTTGAGAGGTATTGTTGAGTGACTAATAAATGAATAgatgg----------------atggatggatggatggatggat--------ATatggataggtgggtggggggtgaatgaatgggtgaaagggtggatgggtggatgagtgggtggaaggatggacaaatgagtggctgggtaaatagatgggtacgtgggtagatagatggatgaaggggtgagtggacgaatgaatggaagggttggtggttagatggattaatggatagatga
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e ponAbe2.chr19              55832305 630 +  60714840 M
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47025245 15035 +  51301725 I

a score=9460.000000
s hg38.chr19_GL949751v2_alt     29215 10 +   1002683 atggatggat
s panTro4.chr19              58965935 10 +  63644993 atggatggat
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59888554 10 +  64156825 atggatggat
i rheMac3.chr19             I 236 C 0
s macFas5.chr19              54905736 10 +  59248254 atggatggat
i macFas5.chr19             I 192 C 0
s chlSab2.chr6               46737911 10 +  50890351 atggatggat
i chlSab2.chr6              C 0 I 176
e canFam3.chr1               19471036 2753 - 122678785 I
e ponAbe2.chr19              55832305 630 +  60714840 M
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47025245 15035 +  51301725 I

a score=277224.000000
s hg38.chr19_GL949751v2_alt     29225 329 +   1002683 ggatggatggatggatggatggatgagttgatggatagatggat--------------------------------aagtgagtggatggatgggtgaatgagtgggtaggagggtggatgggttggtaggtgggtagatgggtgggtgggttgatagatgggt------------------------gggtagattgatagatggatgggtgagtAGATAAATGGGTAGATGAAAGTGATGCAAAATTATTCTTTATCCCTCTTCCTTGGGATCTCAAGTCATGTATGTTACAATCCTCCCACGTGCATCTTCTCACTGTGGTCCTCATCATTTTTT--TTTCAGTTACCTGCACCGTGCCTCCCATACTTTTCCACACAATGGGA
s panTro4.chr19              58965945 385 +  63644993 ggatggatggatggatggatggatgagttgatggatagatggatggatggatggatgagttgatggatagatggataagtgagtggatggatggGTGAATGAGTGGGTAGGAGAGtggatgggttggtaggtgggtagatgggtgggtgggttgatagatgggtaggtagattgatagacggatgggtgggtagattgatagatggatgggtgggtagataaatggGTAAATGAAAGCGATGCAAAATTATTCTTTATCCCTCTTCCTTGGGATCTCAAGTCATTTATGTTACAATCCTCCCACGTGCATCTTCTCACCGTGGTCCTCATCATTTTTT--TTTCAGTTACCTGCACCATGCCTGCCACACTTTTCCACACAATGGGA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59888564 331 +  64156825 ggatggatggatggatggatgggtgagttgatggatagatggat--------------------------------aagtgagtggatggatgggtgaatgagtgggtgggagggtagatgggttggtaggtgggtagatgggtgggtgggttgatagatgggt------------------------aggtggatggatagatggatgggtgggtAGATAAACGGGTAGATGAAAATGATGCAAAATTATTCTTTATCCCTCTTCCTTGGGATCTCAAGTCACTTATGTTACAATCCTCCCATGTGCATCCTCTCACTGTGGTCCTCATCATTTTTTAATTTCAGTTGCCTGCACCATGCCTGCCATATTTTCCCACACAATGGGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54905746 331 +  59248254 ggatggatggatggatggatgggtgagttgatggatagatggat--------------------------------aagtgagtggatggatgggtgaatgagtgggtgggagggtagatgggttggtaggtgggtagatgggtgggtgggttgatagatgggt------------------------aggtggatggatagatggatgggtgggtagataaacgggtagatgAAAATGATGCAAAATTATTCTTTATCCCTCTTCCTTGGGATCTCAAGTCACTTATGTTACAATCCTCCCATGTGCATCCTCTCACTGTGGTCCTCATCATTTTTTAATTTCAGTTGCCTGCACCATGCCTGCCATATTTTCCCACACAATGGGA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46738097 327 +  50890351 ggatggatggatggatggatgggtgagtt----gatagatggat--------------------------------aagtgagtagatggatgggtgaatgagtgggtgggagggtggatgggttggtaggtgggtagatgggtgggtgggttgatagatgggt------------------------aggtggatggatagacagattggtgggtagataaatgggtagatgaaagtgatgTAAAATTATTCTTTATCCCTCTTCCTTGGGATCTCAAGTCACTTATGTTACAATCCTCCCATGTGCATCCTCTCACTGTGGTCCTCATCATTTTTAAATTTCAGTTACCTGCACCATGCCTGCCATATTTTCCCACACAATGGGA
i chlSab2.chr6              I 176 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e ponAbe2.chr19              55832305 630 +  60714840 M
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47025245 15035 +  51301725 I

a score=385562.000000
s hg38.chr19_GL949751v2_alt     29554 302 +   1002683 TCTCTTAGCCCCACAATCCATTATTTGCCATTCCTACATCCCTCATAGAGCACTGGACACTCTTTCTGGCTTTCCTTCTCTGGCATAATGAAATATAAA-TTTTCATTTATgtctgaatagcaactgtgaagctcattgtttttgtgacaccggggaggtcacctaatctctatgagcaaaaagaagttagtaacacaaccaccctcataggaagtgaagactgaatgagttagtggaggcaagttacctgtcgtggagacaggaacatagaaaatgctggatacatgtCAAATGCCAGTGTT
s panTro4.chr19              58966330 301 +  63644993 TCTCTTAGCCCCACAATCCATTATTTGCCATTCCTACATCCCTCATGGAGCACTGGACACTCTTTCTGGCTTTCCTTCTCTGGCATAATGAAATATAAA-TTTTCATTTATGTCTGAATAG-AACTGTGAAGCTCATTGTTTTtgtgaaaccggggaggtcacctaatctctatgagcaaaaagaagttagtaacacaaccaccctcataggaagtgaagactgaatgagttagtggaggcaagttacctgtcgtggagacaggaacatagaaaatgctggatacatgtCAAATGCCAGTGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55832935 301 +  60714840 TCTCTTAGCCCCATAATCCATTATTTGCCATTCCTACATCCCTCATAGAGCACTGGACACTCTTTCTGGCTTTCCTTCTCTGGCATAAAGAAATATAAA-TTTTCATTTATgtctgaacagcaactgtgaagctcattgtttttgtgacaccggggaggtcacctaatctccataagcaaaaagaagttagtaacacaaccaccctcataggaaatgaagactgaatgtgttagtggaggcaagttacctgtc-tagagacaggaacatagaaaatgctggatacatgtCAAATGCCAGTGTT
i ponAbe2.chr19             M 630 C 0
s rheMac3.chr19              59888895 297 +  64156825 TCTCTTAGCCCCATCCTCCATTATTTGCCATTCCTACATCCCTCATAGAGCACTGGACACTCTTTCTGGCTTTTCTTCTGTGGCATAAAGAGATATAAA-TTTTCATTTATgtctgaactgcaactgtgaagctcattgtctttgtgacatcggggaggtcacctagtctctataagcaaaa-----ttagtaacacaaccaccctcacaggaagtgaagactgaatgagttagtggaggcaagttacctgtcgtggagagaggaacatagaaaatgctggatacatgtCAAATGCCAGTGTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54906077 297 +  59248254 TCTCTTAGCCCCATCCTCCATTATTTGCCATTCCTACATCCCTCATAGAGCACTGGACACTCTTTCTGGCTTTTCTTCTGTGGCATAAAGAAATATAAA-TTTTCATTTATgtctgaactgcaactgtgaagctcattgtctttgtgacatcggggaggtcacctagtctctataagcaaaa-----ttagtaacacaaccaccctcacaggaagtgaagactgaatgagttagtggaggcaagttacctgtcgtggagagaggaacatagaaaatgctggatacatgtCAAATGCCAGTGTT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46738424 298 +  50890351 TCTCTTAGCCCCATCCTCCATTATTTGCCATTCCTACATCCCTCATAGAGCACTGGACACTCTTTCTGGCTTTTCTTCTGTGGCATAAAGAAATATAAATTTTTCATTTATgtctgaacagcaactgtgaagctcattgtctttgtgacatcggggaggtcacctagtctctataagcaaaa-----ttagtaacacaaccaccctcataggaagtgaagactgaatgagttagtggaagcaagttacctgtcgtggagacaggaacatagaaaatgctggatacatgtCAAATGCCAGTGTT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19471036 2753 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47025245 15035 +  51301725 I

a score=12555.000000
s hg38.chr19_GL949751v2_alt     29856 8 +   1002683 ATCACTCT
s panTro4.chr19              58966631 8 +  63644993 ATCACTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833236 8 +  60714840 ATCACTCT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59889192 8 +  64156825 ATCACTCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54906374 8 +  59248254 ATCACTCT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46738722 8 +  50890351 ATCACTCT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103184196 8 + 122678785 ATCATGCA
i canFam3.chr1              n 2753 C 0
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47025245 15035 +  51301725 I

a score=226918.000000
s hg38.chr19_GL949751v2_alt     29864 133 +   1002683 ATCCTCACCTGTCACCCAGATCTCCAGCTTGTTGCTGGGGAAGGAGGCCAAGTGTGATGAGTTGCTCAGGTAATACACACAGCTGTAGTTTCCACTGTCATTACTTGTCACGTTCCAGAGCATG-----------------------------------AAATCAGTC
s panTro4.chr19              58966639 133 +  63644993 ATCCTCACCTGTCACCCAGATCTCCAGCTTGTTGCTGGGGAAGGAGGCCAAGTGTGATGAGTTGCTCAGGTAATACACACAGCTGTAGTTTCCACTGTCATTACTTGTCACGTTCCAGAGCATG-----------------------------------AAATCAGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833244 133 +  60714840 ATCCTCACCTGTCACCCAGATCTCCAGCTTGTTGCTGGGGAAGGAGGCCAAGTGTGATGAGTTGCTCAGGTAATACACACAGCTGTAGTTTCCACTGTCATTACTTGTCACGTTCCACAGCATG-----------------------------------AAATCAGTC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59889200 133 +  64156825 ATGCTCACCTGTCACCCAGATCTCCAACTTGTTGCTGGGGAAGGAGGCCAAGTGTGATGAGTCACTCAGGTAATACACACAGCTGTAGTTTCCATTGCCATTACTTGTCACATTCCAGAGCATG-----------------------------------AAATCTGTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54906382 133 +  59248254 ATGCTCACCTGTCACCCAGATCTCCAACTTGTTGCTGGGGAAGGAGGCCAAGTGTGATGAGTCACTCAGGTAATACACACAGCTGTAGTTTCCATTGCCATTACTTGTCACATTCCAGAGCATG-----------------------------------AAATCTGTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040280 133 +  51301725 ATCCTTACCTGTCACCAATATCTCAAGCCAATCACTGCGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACACGCAGCTGTAGTTCCCAGCGTTGCCGGCTGTCACGTCCTCCAGGGTG-----------------------------------AAGTCCGTC
i papAnu2.chr19             I 15035 C 0
s chlSab2.chr6               46738730 168 +  50890351 ATGCTCACCTGTCACCCAGATCTCCAACTTGTTGCTGGGGAAGGAGGCCAAGTGTGATGAGTCACTCAGGTAATACACACAGCTGTAGTTTCCACTGCCATTACTTGTCACATTCCAGAGCATTCACATCTGTCTGTTTTTTTCTTACTTGTCACATTCACATCTGTC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103184204 133 + 122678785 AAACCTACCTCTCACCTGGATCTCCAGAAAATTGCTAGGCTGTGAGGTCAAAAAAGGGGCCCCTATCTGGAAGTACACGCAGCTGTAGTTCCCGGCATCACTGACTGTCACACTCCTGAGGGAG-----------------------------------AAGTCTGTC
i canFam3.chr1              C 0 T 1206
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=2548.000000
s hg38.chr19_GL949751v2_alt     29997 1 +   1002683 T
s panTro4.chr19              58966772 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833377 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59889333 1 +  64156825 T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54906515 1 +  59248254 T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040413 1 +  51301725 T
i papAnu2.chr19             C 0 T 14866
s chlSab2.chr6               46738898 1 +  50890351 T
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19473789 1 - 122678785 t
i canFam3.chr1              I 2753 C 0
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=348393.000000
s hg38.chr19_GL949751v2_alt     29998 205 +   1002683 GGTTTTTTCTTACTTGCCTGACTTGTAATGGTTCTGGGATCCCCATTTTCAACAGAGCAATTACAATACATTCGGTTCCATTGTATGGAGTGAGACATCGAAGTGTC---CTGAGACCTGGAGTCATCCCA-----------GGGTCTACATTGACTGAGAGCAAAGGTTCTGGGAGTGATCCTGAAGAGGACAAGGCAATGGAGGTAAAGAGAAGGGC
s panTro4.chr19              58966773 205 +  63644993 GGTTTTTTCTTACTTGCCTGACTTGTAATGGTTCTGGGATCCCCATTTTCAGCAGAGCAATTACAATACATTCGGTTCCATTGTATGGAGTGAGACATCGAAGTGTC---CTGAGACCTGGAGTCATCCCA-----------GGGTCTACATTGACTGAGAGCAAAGGTTCTGGGAGTGATCCTGAAGAGGACAAGGCAATGGAGGTAAAGAGAAGGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833378 205 +  60714840 GGTTTTTTCTTACTTGCCTGACTTGTAATGGTTCTGGGATCCCCATTTTCAGCAGAGCAATTACAATACATTCAGTTCCATTGTATGGAGTGAGACATCGAAGTGTT---CTGGGACCTGGAGTCATCCCA-----------GGGTCTACACTGACTGAGAGCAAAGGTTCTGGGAGTGATCCTGAAGAGGACAAGGCAATGGAGGTAAAGAGAAGGGC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59889334 205 +  64156825 GTTTTTTTCTTACTTGCCTGACTTGTAATGGTTCTGGGATCCCCATTTTCAGCAGAGCAATTACAATACATTCAGTTCCATTGTATGGAGTTAGACATCAAAATGTC---CTGAGACCTGGAGTCATCCCA-----------GGGTCTACATTGACTGAGAGCAAAGGTTCTGGGAGTGACCCTGAAGAGAACAAGGCAATGGAGGTAAAGAGAAGGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54906516 205 +  59248254 GTTTTTTTCTTACTTGCCTGACTTGTAATGGTTCTGGGATCCCCATTTTCAGCAGAGCAATTACAATACATTCAGTTCCATTGTATGGAGTTAGACATCAAAATGTC---CTGAGACCTGGAGTCATCCCA-----------GGGTCTACATTGACTGAGAGCAAAGGTTCTGGGAGTGACCCTGAAGAGAACAAGGCAATGGAGGTAAAGAGAAGGGC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46738899 216 +  50890351 GTTTTTTTCTTACTTGCCTGACTTGTAATGGTTCTGGGATCCCCATTTTCAGCAGAGCAATTACAATACATTCAGTTCCATTGTATGGAGTGAGACATCAAAGTGTC---CTGAGACCTGGAGTCATCCCAGGGTCATCCCTGGGTCTACATTGACTGAGAGCAAAGGTTCTGGGAGTGACCCTAAAGAGAACAAGGCAATGGAGGTAAAGAGAAGGGC
i chlSab2.chr6              C 0 I 457
s canFam3.chr1               19473790 208 - 122678785 GGATTTTTCTTATTTTCTCAAATTGTAGTGGTTCTGGAATCCCTGTTTTCAGCAGAGCAAGAGCAATACATTTGTGTCTATTGTATGGAATCAGACATCAGAGTCTCATACTGTGACCTGGAGTCATCTCG-----------GGGTCTATATTGAGTAAGAGGGAAGGTTTTAGGAGGGATTCTGAAGAGGACAAAGCAACAGGGGTGAAGAGAAGTAC
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e papAnu2.chr19              47040414 14866 +  51301725 T

a score=4153.000000
s hg38.chr19_GL949751v2_alt     30203 4 +   1002683 CAGG
s panTro4.chr19              58966978 4 +  63644993 CAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833583 4 +  60714840 CAGG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59889539 4 +  64156825 TAGG
i rheMac3.chr19             C 0 I 345
s macFas5.chr19              54906721 4 +  59248254 TAGG
i macFas5.chr19             C 0 I 354
s canFam3.chr1               19473998 4 - 122678785 CAAG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e chlSab2.chr6               46739115 457 +  50890351 I
e papAnu2.chr19              47040414 14866 +  51301725 T

a score=344342.000000
s hg38.chr19_GL949751v2_alt     30207 174 +   1002683 GCTTTTCCATTTTCTACTGCACTTGGGGACTATCTCATCCATCTCTCCgtatta---accatgtctttcatcttctgcatttgatgctttaacatcttggggccttgctgcccttggtgggacctcccctcgcagggttagttaatttctagagccagtaaacaacttgtcctcaag
s panTro4.chr19              58966982 170 +  63644993 GCTTTTCCATTTTCTACTGCACTTGGGGACTATCTCATCCATCTCTCtgtatta---accatgtctttcatcttccgcatttgatgctttaacgtcttggggccttgctgcccttggtgggacctcccctcgcagggtta----atttctagagccagtaaacaacttgtcctcaag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833587 174 +  60714840 GCTTTTCCATTTTCTACTGCACTTGGGGACTATCTCATCCATCTCTCCgtatta---accatgtctttcattttctgcatttgatgctttaatgtcttagggccttgctgcccttggtggtacctcccctcccagggttagttaatttctagagccagtaaacaacttgtcctcaag
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59889888 176 +  64156825 GCTTTTCCATTTTCTACTGCACTTGGGGACTATCTCATCCATCTCTCtgtattaaccaccatgtctttcattttctgcatttgatgctttgacatcttggggccttgctgcccttggtgggaccacccctcccagggttagttaatttctagagtcagtaaaccacttgtcctcaa-
i rheMac3.chr19             I 345 C 0
s macFas5.chr19              54907079 176 +  59248254 gcttttccattttctACTGCACTTGGGGACTATCTCATCCATCTCTCtgtattaaccaccatgtctttcattttctgcatttgatgctttgacatcttggggccttgctgcccttggtgggaccacccctcccagggttagttaatttctagagtcagtaaaccacttgtcctcaa-
i macFas5.chr19             I 354 C 0
s papAnu2.chr19              47025548 176 +  51301725 GCTTTTCCATTTTCTACTGCACTTGGGGACTATCTCGTCCACCTCTCTGTATTAACCACCATGTCTTTCATTTTCTGCATttgatgctttgacatcttgggGCCTTGCTGCCCTTGGTGGGACCACCCCTCCCAGGGTTAGTTAATTTCTAGAGCCAGTAAACCACTTGTCCTCAA-
i papAnu2.chr19             T 14866 C 0
s chlSab2.chr6               46739572 161 +  50890351 GCTTTTCCATTTTCTACTGCACTTGGGGACTATCTCATCCATCTCTCTGTA---------------ttcattttctgcatttgatgctttgacatcttggggccttgctgcccttggtgggaccacccctcccagggttagttaatttctagagccagtaaaccacttgtcctcaa-
i chlSab2.chr6              I 457 C 0
s canFam3.chr1               19474002 168 - 122678785 GCATCCACA-TTTCCAATGCACCTGGGGTCATTCTTACCCATCTCt--atatta---accacatcttttattttctgtattcaacactttgatatcttgggaccttgctgacccta--gagatatcccctctcaagg-tatccacttcctagagaaaggagacaactttccctcaag
i canFam3.chr1              C 0 I 137
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=362884.000000
s hg38.chr19_GL949751v2_alt     30381 175 +   1002683 --------gatgtccctcaaatgcaagccaatagatccagagcccatactctcaaccaccttaattatggggctctcacactcaaggtcaatgttgtcctctcctaatcaccccaggtccaagaactagacaaccagggacagcctctacaccccaaagccaattctttttttgtttttcttt
s panTro4.chr19              58967152 175 +  63644993 --------gatgtccctcaaatgcaagccaatagatccagagcccacactctcaaccaccttcattatggggctctcacactcaaggtcaatgttgtcctctcctaatcaccccaggtccaagaactagacaaccagggacagcctctacaccccaaagccaattctttttttctttttcttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833761 175 +  60714840 --------tatgcccctcaaatgcaagccaatagatccagatcccacactccaaaccaccttcattatggggctctcacactcaaggtcaatgttgtcctctcctaatcaccccaggtccaagaaatagacaaccagggacagcctctataccccaaagccaattctttttttctttttcttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59890064 175 +  64156825 --------tatgtccctcaaatgcaagccaatagatccagagccctcattcccaaccaccttcattatgaggctctcacactcaaggtgaaagttgtcctctcctaatcaccccaggtccaagaactagacaaccagggacagtctctataccccaaagccaattctttttttttttcttttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54907255 175 +  59248254 --------tatgtccctcaaatgcaagccaatagatccagagccctcactcccaaccaccttcattatgaggctctcacactcaaggtgaaagttgtcctctcctaatcaccccaggtccaagaactagacaaccagggacagtctctataccccaaagccaattctttttttttttcttttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47025724 175 +  51301725 --------TATGTCCCTCAAATGCAAGCCAATAGATCCAGAGCCCTCACTCCCAACCACCTTCATGATGAGGCTCTCACACTCAAGGTGAAAGTTGTCCTCTCCTAATCACCCCAGGTCCAAGAACTAGACAACCAGGGACAGTCTCTATACCCCAaagcccattcttttttttttttctttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46739733 172 +  50890351 --------tatgtccctcaaatgcaagccaatagatccagagccctcactcccaaccaccttcattatgaggctctcacactcaaggtgaaagttgtcctctcctaattaccccaggtccaagaactagacaaccagggacagtctctataccccaaagccaattcttttttcttttttt---
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19474307 181 - 122678785 gatgCAAgcacccttcttaagtgcaaaacaaccaatccagagctcatacttccaaccacctcctctat--ggctctcacactctgggccagggttcccctgccctaatcacttcagggccagataccagacagtcagggacagcatctataccccatagttaatcctaagcctgttccttctt
i canFam3.chr1              I 137 I 1
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=576564.000000
s hg38.chr19_GL949751v2_alt     30556 351 +   1002683 tctttct--------ttcttttcttttctttt-cttttttttt---ttttttttttttttttgagacaggttctcattctatcacccaggcttgagtgcagtggcacgatcttggctcaccgcagcctctgcctctggggttcaagcaattctcgtgcctcagcctcccgagtagctgaaagcacaggtgcacaccaccacacccaggtaattattgtatttttgtagagatggagtttcgccatgttacccaggctgatgtcaaactcctgacctcaggtgatccaccctcctaggcctcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctaatcttgttctccc
s panTro4.chr19              58967327 355 +  63644993 tctttct--------ttcttttcttttctttttcttttcttttcttttttttttttttttttgagacaggttctcattctatcacccaggcttgagcacagtggcatgatcttggctcacggcagcctctgcctccggggttcaagcaattctcgtgcctcagcctcccaagtagctgaaagcacaggtgcacaccaccacacccaggtaattattgtatttttgtagagatggggtttcgccatgttacccaggctgatgtcaaactcctgacctcaggtgatccgccctcctaggcctcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctaatcttgttctccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55833936 363 +  60714840 tctttcttttctttcttcttttcttttctttttcttttttttttttttttttttttttttttgagacaggttctcattctatcacccaggcttgagtgcagtggcacaatcttggcttactgcagcctctgcctcctgggttcaagcaattctcatgcctcagcctcccaagtagctgaaagcacaggtgcacaccaccacacccaggcaattattgtatttttgtagagatggggtttcgccatgttacccaggctgatgtcaaactcctgacctcaggtgatccgccctcctcggcctcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctaatcttgttctccc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59890239 313 +  64156825 t--------------------------------------------------tttttttttttgagacaggttctcattctatcacccaggcttgaatgcagtggcacgatcttggctcaccgcagcctctgcctcctgggttcaagcaattctcgtgcctcagtctcccaagtagctgaaagcacaagtgcacaccaccacacccaggtaattattatatttttgtagagatggagtttcgccttgttacccaggctgatgtcacactcctgacctcaggtgatccgccctcctcggcttcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctaatcttgttctccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54907430 313 +  59248254 t--------------------------------------------------tttttttttttgagacaggttctcattctatcacccaggcttgaatgcagtggcacgatcttggctcaccgcagcctctgcctcccaggttcaagcaattctcgtgcctcagtctcccaagtagctgaaagcacaagtgcacaccaccacacccaggtaattattatatttttgtagagatggagtttcgccttgttacccaggctgatgtcacactcctgacctcaggtgatccgccctcctcggcttcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctaatcttgttctccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47025899 348 +  51301725 ttctttc--------tttctttcttttttctttcttttc-------ttttctttttttttttgagacaggttctcattctatcacccaggcttgaatgcagtggcacaatcttggctcactgcagcctctgcctcccgggttcaagcagttctcgtgcctcagtctcccaagtagctggaagcacaagtgcacaccaccacacccaggtaattattgtatttttgtagagatggaatttcgccatgttacccaggctgatgtcaaactcctgacctcaggcgatccgccctcctcggcttcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctAATCTTGTTCTCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46739905 312 +  50890351 ---------------------------------------------------tttttttttttgagacaggttctcattctatcacccaggcttgaatgtagtagcacgatcttggctcaccgcagcctctgcctcccgggttcaagcaattctcgtgcctcagtctcccaagtagctgaaagcacaagtgcacaccaccacacccaggtaattattgtatttttgtagagatggagtttcaccatattacccaggctgatgtcaaactcctgacctcgggtgatccgccctcctcggcttcccaaagtgctaggattacaggcatgaaccaccacacctggccaactctaatcttgttctccc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19474488   1 - 122678785 I
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=274550.000000
s hg38.chr19_GL949751v2_alt     30907 144 +   1002683 cacaaaatacaatcaaagctctggtccacagttcttcctcctccctctgc-ccctcattgaccctggtgcttccccacatactcc-----ccccagtatagccttcctcctcctcttgggaactg-taacagacca---tcttttccatggcaa
s panTro4.chr19              58967682 146 +  63644993 cacaaaatacagtcaaagctctggtccacagttcttcctcctccctctgc-ccctgattgaccctggtgcttccccccatacccc---acccccagtatagccttcctcctcctcttgggaactg-taacagacca---tcttttccatggcaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55834299 146 +  60714840 cgcaaaatacaatcaaagctctggtccacagttcttcctcctccctctgc-ccctgattgaccctggggcttccccccatacccc----cccatagtatagggttcctcctcctcttgggaactgttaacagacca---tcttttccatggcaA
i ponAbe2.chr19             C 0 M 1306
s rheMac3.chr19              59890552 145 +  64156825 cacaaaatacaatcaaagctctggcccacag---ttcctccttcctctgc-ccctgattgaccctggtgcttcccc-catacccccacccccatagtatagccttccccctcctcttgggaactg-taacagacca---tcttttccatggcaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54907743 145 +  59248254 cacaaaatacaatcaaagctctggcccacag---ttcctccttcctctgc-ccctgattgaccctggtgcttcccc-catacccccacccccatagtatagccttccccctcctcttgggaactg-taacagacca---tcttttccatggcaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026247 148 +  51301725 CACAAAATACAATCAAAGCTCTGGCCCACagttcttcctccttcctctgc-ccctgATTGACCCTGGTGCTTcccc-catacccccacccccATAGTATAGCCTTCCCCCTCCTCTTGGGAACTG-TAACAGACCA---TCTTTTCCATGGCAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740217 146 +  50890351 cacaaaatacagtcaaagctctggcccacagttcttcctccttcctctgc-cc--gattgaccctggtgcttcccc-catacccccacccccatagtatagccttccccctcctcttgggaactg-taacagacct---tcttttccatggcaa
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19474489 145 - 122678785 cagaaaccacagtaaaggctcttgccta---gtcttatccctccctctgcttcctcactgaccctgatacttctctatatggccc----tgtatggcatggcatacc-cctcttcttgggaagtc-taacaaactatgtttttttcaatgacag
i canFam3.chr1              I 1 C 0
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=25604.000000
s hg38.chr19_GL949751v2_alt     31051 24 +   1002683 tcatcacttg------------------------------gtctgtcagtctta--
s panTro4.chr19              58967828 24 +  63644993 tcatcacttg------------------------------gtctgtcagtctta--
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59890697 24 +  64156825 tcatcgcttg------------------------------gtttgtcagtctta--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54907888 24 +  59248254 tcatcgcttg------------------------------gtttgtcagtctta--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026395 24 +  51301725 TTATCGCTTG------------------------------GTTTGTCAGTCTTA--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740363 24 +  50890351 tcatcgcttg------------------------------gtttgtcagtctta--
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19474634 56 - 122678785 tcatctcttaaaaaaaaaaaaaaaaaaaaaaaaGACAGTCATCTCTTCATCTTTGA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55834445 1306 +  60714840 M
e calJac3.chr22              45314863 3697 +  49145316 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=254051.000000
s hg38.chr19_GL949751v2_alt     31075 134 +   1002683 -----ccatacccc-aatTTTCTATTAACTGACCATATTCTACACCACCCTCCCACATCCACATCATTGGGACCCTCTCAGAA------TCTCTGATGAGAATCTTGCTCCACATTC-GGTTCCCATTTC----------CACATTGAAGGTGTTGC
s panTro4.chr19              58967852 134 +  63644993 -----ccatacccc-aatTTTCTATTAACTGACCATATTCTACACCACCCTCCCACATCCACATCATTGGGACCCTCTCAAAA------TCCCTGATAAGAATCTTGCCCCACATTC-GGTTCCCATTTC----------CACATTGAAGGTGTTGC
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59890721 141 +  64156825 -----ccgtaccct-aatTTTCTATTAACTGACCATATTCTACACCACCCTCCCACATCCACATCATTGGGACCCTCTCAGAATCCCTGTCCCTGATGAGAATCTTGCCCCACGTTCGGGTTCCCATTTC----------CACACTGAAGGTATTGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54907912 141 +  59248254 -----ccgtaccct-aatTTTCTATTAACTGACCATATTCTACACCACCCTCCCACATCCACATCATTGGGACCCTCTCAGAATCCCTGTCCCTGATGAGAATCTTGCCCCACGTTCGGGTTCCCATTTC----------CACACTGAAGGTATTGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026419 137 +  51301725 -----CCGTACCCT-AATTTTCTATTA----ACCATATTCTACACCACTCTCCCACATCCACATCATTAGGACCCTCTCAGAATCCCTGTCCCTGATGAGAATCTTGCCCCACGTTCGGGTTCCCATTTC----------CACACTGAAGGTATTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740387 141 +  50890351 -----ccgtaccct-aatTTTCTATTAACTGACCATATTCTACACCACTCTCCCACATCCACATCATTGGGACCCTCTCAGAATCCCTGTCCCTGATGAGAATCTTGCCCCACGTTCGGGTTCCCATTTC----------CACACTGAAGGTATTCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45318560 130 +  49145316 -----CTGTACCCC-CATTTTCTATTG----ACCGTATTCTACACCACTCTGCAGCATCCACATCATTGGGACCCTCTCACAA------TCCCTGATGGGAATCTTGCCCCACATTC-CGTTCCCATTTC----------CACATTTAAGATGTCGC
i calJac3.chr22             I 3697 C 0
s canFam3.chr1               19474690 149 - 122678785 CCATACTGTACCTCAAATTTTCTATTGGCA-TCTATATTCTAAAACACTCTCCCACATCCACCTCATTGATACATACTCATAA------TCTTTGATGAGAGCCTGTCCCCACACTC-ACTTCCCATTTCTCCCATACTTTACACCCAAGTGGTCAC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=516.000000
s hg38.chr19_GL949751v2_alt     31209 2 +   1002683 AT-
s panTro4.chr19              58967986 2 +  63644993 AT-
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59890862 2 +  64156825 AT-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54908053 2 +  59248254 AT-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026556 2 +  51301725 At-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740528 2 +  50890351 AT-
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19474839 2 - 122678785 -TC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55834445 1306 +  60714840 M
e calJac3.chr22              45318690 0 +  49145316 C
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=327264.000000
s hg38.chr19_GL949751v2_alt     31211 321 +   1002683 CTATCCttcttcttctt--------ttttttttttagacggagtcttgctctttcatccaggctgcagtgcagtggcacaatctcagctcattacaacctctgccttctgggctcaagagattctcttcctgcctcagcctccctagtagctgggattacaggcgcctgccaccacgcccagctaatttttgtattttaa------------------------------------------------------------gtagaggtgaggtttcaccatgttggccaggctggtctcgaactcccgacctcaagtgat------------------------------ctgcccacctctgcctcccaaagtgctgggattacaggcatgagccaccgcgccGTGCCTGGCCTGCAT
s panTro4.chr19              58967988 329 +  63644993 CTATCCttcttcttcttcttcttttttttttttttagacagagtcttgttctttcatccaggctgcagtgcagtggcacaatctcagctcattacaacctctgccttctgggctcaagggattctcctcctgcctcagcctccctagtagctgggattacaggcacctgccaccacgcccagctaatttttgtattttaa------------------------------------------------------------gtagaggtgaggtttcaccatgttggccaggctggtctcgaactcccaacctcaagtgat------------------------------ctgcccacgtctgcctcccaaagtgctgggattacaggcatgagccactgcgccGTGCCTGGCCTGCAT
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59890864 315 +  64156825 CTATCC----ttttttt--------tttttttttgagacggagtcttgctctttcatccaggctggagtgcagtgacacaatctcggctcattacaacctctgcctactgggttcaagtgattctcctcctgcctcagcctccctagtagctgggattacaggtgccc--------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgccGTGCCCGGCCTGCAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54908055 318 +  59248254 CTATCC---tttttttt--------tttttttttgagacagagtcttgctctttcatccaggctggagtgcagtgacacaatctcggctcattacaacctctgcctactgggttcaagtgattctcctcctgcctcagcctccctagtagctgggattacaggtgcccaccaccacacccagctaatttttgtattttta------------------------------------------------------------gtagagttgaggtttcaccatgttggccagactggtctcgaactcctgacctcaagtgat------------------------------ccgcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgccGTGCCCGGCCTGCAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026558 312 +  51301725 ctatcc---------ct--------tttttttttgagacggagtcttgctctttcatccaggctggagtgcagtgacacaatctcggctcattacaacctctgcctactgggttcaagtgattctcctcctgcctcagcctccctagtagctgggattacaggtgcccaccaccacacccagctaatttttgtattttta------------------------------------------------------------gtagagttgaggtttcaccatgttggccagactggtctcgaactcctgacctcaagtgat------------------------------tcgcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcaccgtgcccagcctgcat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740530 320 +  50890351 CTATCCtt-tttttttt--------tttttttttgagacggagtcttgctctttcatccaggctggagtgcagtggcacaatctcggctcattacaacctctgcctactgggttcaagtgattctcctcctgcttcagcctccctagtagctgggattacaggtgcccgccaccacacccagctaatttttgtattttta------------------------------------------------------------gtagagttgaggtttcaccattttggccagactggtctcaaactcctgacctcaagtgat------------------------------ccacccacctctgcctcccaaagtgctccgattacaggcgtgagccaccgcaccgtgcccggccTGCAT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19474841   0 - 122678785 C
e ponAbe2.chr19              55834445 1306 +  60714840 M
e calJac3.chr22              45318690   0 +  49145316 C
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=4011.000000
s hg38.chr19_GL949751v2_alt     31532 2 +   1002683 CT
s panTro4.chr19              58968317 2 +  63644993 CT
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59891179 2 +  64156825 CT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54908373 2 +  59248254 CT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026870 2 +  51301725 cT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740850 2 +  50890351 CT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19474841 2 - 122678785 CT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55834445 1306 +  60714840 M
e calJac3.chr22              45318690 0 +  49145316 C
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=145492.000000
s hg38.chr19_GL949751v2_alt     31534 71 +   1002683 ATCTTTTTGTCTCCTAGATTCCTTCTTCCCCAGCCATGTCCCACGACAG---GAAAAGAAATACGTGCATCAGG
s panTro4.chr19              58968319 71 +  63644993 ATCTTTTTGTCTCCTAGATTCCTTCTTCCCCAGCCATGTCCCACGACAG---GAAAAGAAATACGTGCATCAGG
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59891181 71 +  64156825 ATCTTTTTGTCTCCTGGGTTCCTTCTTCCCCAGCCACGTCCCACAACAG---GAAAAGAAATACGTGCATCAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54908375 71 +  59248254 ATCTTTTTGTCTCCTGGGTTCCTTCTTCCCCAGCCACGTCCCACAACAG---GAAAAGAAATACGTGCATCAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026872 71 +  51301725 ATCTTTTTGTCTCCTGGGTTCCTTCTTCCCCAGCCATGTCCCacaacag---gaaaagaaatacGTGCATCAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740852 71 +  50890351 ATCTTTTTGTCTCCTGGGTTCCTTCTTCCCCAGCCACGTCCCACAACAG---TAAAAGAAATACGTGCATCAGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45318690 74 +  49145316 ATGTTTTTGTCTCCTGGGTTCCTTCCTTCCCAGTCACATCCCCCAACAGAAAAAAAAAAAAAACTCACATCAgg
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19474843 71 - 122678785 GTCTTTTTGTTTCCTGGATTCTTCTTTCACCAACCAGGCTCCATCACAA---GAAAAGGACTATATGCCTCAAG
i canFam3.chr1              C 0 I 8
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=4011.000000
s hg38.chr19_GL949751v2_alt     31605 2 +   1002683 CA
s panTro4.chr19              58968390 2 +  63644993 CA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59891252 2 +  64156825 CA
i rheMac3.chr19             C 0 I 397
s macFas5.chr19              54908446 2 +  59248254 CA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026943 2 +  51301725 CA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740923 2 +  50890351 CA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45318764 2 +  49145316 ca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19474914 8 - 122678785 I
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=146770.000000
s hg38.chr19_GL949751v2_alt     31607 110 +   1002683 GGCTTTggtgactcacgcctgtaatcccagcactttgggaggccaaggcaggaggatcacctgagctcaggagttcaagaccagcctgggcaacat----agatcctgtctcaa
s panTro4.chr19              58968392 110 +  63644993 GGCTTTggtgactcacgcctgtaatcccagcactttgggaggccaaggcaggaggatcacctgagctcaggagttcaagaccagcctgggcaacat----agatcctgtctcaa
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54908448 110 +  59248254 GGCTTTggtgactcacgcctgtaatcccagcactttgggaggccaaggcaggaggatcacctgagctcaggagttcaagactagcctgggcaacat----agatcctgtctcaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47026945 110 +  51301725 GGCtttggtgactcacgcctgtaatcccagcactttgggaggccaaggcaggaggatcacctgagctcaggagttcaagaccagcctgggcaacat----agatcctgtctcaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46740925 110 +  50890351 GGCTTTggtgactcacgcctgtaatcccagcactttgggaggccaaggaaggaggatcacctgaactcaggagttcaagaccagcctgggcaacat----agatcctgtctcaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45318766 114 +  49145316 ggcctcggtgactcaagtctgtaatcccagcactttgagaggccaaagcagaaggataacctgagctcaggagttcaagaccagcctgggcaatatagagagatcctgtctcaa
i calJac3.chr22             C 0 I 926
e canFam3.chr1               19474914   8 - 122678785 I
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I
e rheMac3.chr19              59891254 397 +  64156825 I

a score=426628.000000
s hg38.chr19_GL949751v2_alt     31717 458 +   1002683 caagtaatttaaaaattagccaggcatggtggtgcttgcctgtactcccagctacttgggaggctgatgtgggaaaatcgcttgagcctgggaggtcgaggctgcagtgaattgtgttcatgccactgcactcctgcctgggtgacagagcgagattctgt--caaaaaaaaaaaaa---------GCA-----gccgagcgcagtggctcactcctgtaatctcagcactttgggaggctgaggtgggcagatcacttgaggtcagcagttcgagat-------------------------------cagcctggccaacatggtaaaaccctgtctctactaaaatacaaaaattagccaggtgtggtggcgcacccctgtagttccagctactcgggaggctgaggcaggtgaattgcatgaacccaggaggcgggggttgcagtgagctgagatcatgccactgtactccagcctgggcaacagagcaagactccctctc
s panTro4.chr19              58968502 456 +  63644993 caagtaatttaaaaattagccaggcacggtggtgcttgcctgtactcccagctacttgggaggctgatgtgggaaaattgcttgagcctgggaggtcgaggctgcagtgaattgtgttcatgccactgcactcctgcctgggtgacagagagagattctgt--caaaaaaaaaaa-----------GCA-----gccgagcgcagtggctcactcctgtaatctcagcactttgggaggctgaggtgggcagatcacttgaggtcagcagttcgagat-------------------------------cagcctggccaacatggtaaaaccctgtctctactaaaatacaaaaattagccgggtgtggtggcgcacccctgtagttccagctactcgggaggctgaggcaggtgaattgcatgaacccaggaggcgggggttgcaatgagctgagatcatgccactgtactccagcctgggcaacagagcaagactccctctc
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54908558 460 +  59248254 caaatactttaaaaattagccaggcgtggtggtgcttgcctgtactcccagctacttgggaggctgatgtgggaaaattgcttgagcctgggaggtcgaggctgcagtgaattgtgtgcatgccactgcactcctgcctgggcgacagagcgagattctgt--caaaaaaaaaaaaaaaaacaaaaacaaaaCCGCCAAGCGCAGTGGC------------tcccagcactttgggaggctgagatgggcagatcacttgaggtcagcagttcgagat-------------------------------cagtctgaccaacatggtaaaaccctgtctctactaaaatacaaaaattagcccggtgtggtggtgcacccctgtagtttcagctactcgggaggctgaggcaggtgaattacatgaacccaggaggcggagattgcagtgagctgagatcatgccactgcactctagcctaggcgacagagcaagactgcctctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47027055 467 +  51301725 caaatactttaaaaattagccaggcgtggtggtgcttgcctgtactcccagctgcttgggaggctgatgtgggaaaattgcttgagcctgggaggttgaggctgcagtgaattgtgttcatgccactgtactcctgcctgggcgacagaacgagattctgt--caaaaaaaaaaaaa-----aaaaacaaagcagccaagcgcagtggcttactcccgtaatcccagcactttgggaggctgaggtgggcagatcacttgaggtcagcagtttgagat-------------------------------cagcctgaccaacatggtaaaaccctgtctctactaaaatacaaaaattagcccggtgtggtggtccacccctgtagtttcagctactcgggaggctgaggcaggtgaattacatgaacccaggaggcggagattgcaatgagctgagatcacgccactgcactccagcctaggcgacagagcaagactgcctctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46741035 464 +  50890351 caaataatttaaaaattagccaggcgtggtggtgcttgcctgtactcccagctacttgggaggctgatgtgggaaaattgcttgagcctgggaggtcgaggctgcagtgaattgtgttcatgccactgcactcctgcctgggcgacagagcaagattctgtaccaaaaaaaaaaaaa-----aaaGACA-----gccaagcgcggtggcttactcccgtaatcccagcactttgggaggctgatgtgggcagatcacttgaggtcagcagttcgagat-------------------------------cagcctgaccaacatggtaaaaccctgtctctactaaaatacaaaaattagcccggtgtggtggtccacccctgtagtttcagctactcgggaggctgaggcaggtgaattacatgaacccaggaggtggagattgcaatgagctgagatcatgccactgcactccagcctaggcgacagagcaagactgcctctc
i chlSab2.chr6              C 0 I 2703
s calJac3.chr22              45319806 421 +  49145316 caaaaAAAC--AAAAGCAgccaggcacagtggctcactcctgtaattcccgcaatttgggaggctgaggcaggcaaatcatgtgaggtcaggagttcaaaa-------------------------------tcagcctcactaacatggtgaaaccctac--taaaatacaaaaat----------ta-----gctgggtgtggtggcacagccctgtagtcccagctactcgggaggctgaggtag---aagtgcttgaactcaggaggtggaggtttcagtaagctgagattgtgtcactgcactccagcttgggagacagagcaagacaaccactcaaaaaaaaaaaaaaaaaTGGTTTGGAGAggtggctcacacgtgttaatcccgccctttgggagcctgtggtgagtggatcacctgaggtcaggagtttgagat-------------------------------cagcctcaccagtatggtgaaacctcatctc
i calJac3.chr22             I 926 I 5
e canFam3.chr1               19474914   8 - 122678785 I
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I
e rheMac3.chr19              59891254 397 +  64156825 I

a score=8898.000000
s hg38.chr19_GL949751v2_alt     32175 27 +   1002683 aaaaaaaaaaaaaag-------------gctgggtgtgga
s panTro4.chr19              58968958 32 +  63644993 aaaaaaaaaaaaaaaaaa--------aagctgggtgtgga
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54909018 29 +  59248254 aaaaaaaaaaaaaaa-----------aTgccgagcacggt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47027522 40 +  51301725 aaaaaaaaaaaaaaaaaaaaaaaaacacgccgggcactgt
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45320232 27 +  49145316 --aaaaacaaaaatt-----------gggccaggcgaggt
i calJac3.chr22             I 5 C 0
e canFam3.chr1               19474914  8 - 122678785 I
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I
e chlSab2.chr6               46741499 2703 +  50890351 I
e rheMac3.chr19              59891254 397 +  64156825 I

a score=100170.000000
s hg38.chr19_GL949751v2_alt     32202 87 +   1002683 ggttcacgtttataatcccagccctttgggaggccgaggcagatggatcacttgaggtcaggagtttgagatcaacctcaccaatat
s panTro4.chr19              58968990 87 +  63644993 ggttcacgtttataatcccagccctctgggaggccgaggcagatggatcacttgaggtcaggagtttgagatcaacctcaccaatac
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59891651 87 +  64156825 ggttcacgtttgtaatcccagccctttgggaggccaaggcagatggatcacctgagatcaggagtttgagatcaacctcaccagtat
i rheMac3.chr19             I 397 C 0
s macFas5.chr19              54909047 87 +  59248254 ggttcacgtttgtaatcccagccctttgggaggccaaggcagatggatcacctgagatcaggagtttgagatcaacctcaccagtat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47027562 87 +  51301725 ggttcacgtttgtaatcctagccctttgggaggccaaggcagatggatcacctgagatcaggagtttgagatcaacctcaCCAGTAT
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45320259 84 +  49145316 ggctcacacctgtaatcc-agcactttgggaggccaaggcggatggatcac--aaggtcaagagatcgagaccatcctagtcaacat
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19474914  8 - 122678785 I
e ponAbe2.chr19              55834445 1306 +  60714840 M
e nomLeu3.chr10             102598098 717 - 106955855 I
e chlSab2.chr6               46741499 2703 +  50890351 I

a score=183878.000000
s hg38.chr19_GL949751v2_alt     32289 124 +   1002683 ggtacaacctcatctttattaaaaatacaaaaatta-ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggcggaggcaggtggatcac--aaggtcaggagatggaga-------------------------------ccatcc
s panTro4.chr19              58969077 124 +  63644993 ggtataacctcatctttattaaaaatacaaaaatta-ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcac--aaggtcaggagatggaga-------------------------------ccatcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55835751 125 +  60714840 GGTATAACCTCGTCTTTATTAAAAATACAAAAATTACCgctgggcgcggaggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggaccac--gaggtcaggagatggaga-------------------------------ccatcc
i ponAbe2.chr19             M 1306 C 0
s rheMac3.chr19              59891738 124 +  64156825 ggtacaaccacgtctttattaaaaatacaaaaatta-ggccaggctcggtggctcacacctataatcccagcactttgggaggccgaggtgggcggatcac--gaggttaggagatggaga-------------------------------ccatcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54909134 124 +  59248254 ggtacaaccacgtctttattaaaaatacaaaaatta-ggccaggctcggtggctcacacctataatcccagcactttgggaggccgaggtgggcggatcac--gaggttaggagatggaga-------------------------------ccatcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47027649 124 +  51301725 GGTACAACcacgtctttattaaaaatacaaaaatta-ggccaggcgcggtggctcacacctgtaatcccagcactttggaaggccaaggcaggcggatcac--gaggtcaggagatggaga-------------------------------ccatcc
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45320343 156 +  49145316 ggtgaaaccctgtctgtagtaaaaatacaaaaatta--gctgggcatggtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgcggtgagccgagatcgcgccattgcactccagcc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19474914   8 - 122678785 I
e nomLeu3.chr10             102598098 717 - 106955855 I
e chlSab2.chr6               46741499 2703 +  50890351 I

a score=471255.000000
s hg38.chr19_GL949751v2_alt     32413 226 +   1002683 tggctaacatg-gcgaaaccccatctctacta--------------aaaacacaaacaattagctgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggagggagaattgcttgaacccaggaggcagaagttgcagtgagccgagatcgtgccactgcactccagcctgggagacacagcaagactctgtctta----aaaaaaaaaaa----------------gcaaaGCCAAACCAAAGAAAT
s panTro4.chr19              58969201 240 +  63644993 tggctaacatg-gcgaaaccccatctctacta--------------aaaacacaaacaattagccgggcgtggtggcgggcgcctgtagtcccaactactcgggaggctgaggagggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgtgccactgcactccagcctgggagacacagcaagact--gtctta----aaaaaaaaaaaaaaaaaaaaaaaaaaaGCAAAGCCAAACCAAAGAAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55835876 226 +  60714840 tggctaacatg-gtgaaaccccatctctacta--------------aaaacacaaacaattagccaggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcgggaggattgcttgaacccaggaggcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggtgacacagcaagactctgtcttt----aaaaaaaaaaa----------------gcaaagcaaaaccaaagaaaT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59891862 237 +  64156825 tggctaacacg-gtgaaaccccatctctacta--------------aaaacacaaa-aagtagccgggcgtggtggcgggagcctgtagtcccagctactcgggaggctggggaggaagaattgcttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcactccagcccaggcgacagagcaagactctgtcttg--aaaaaaaaaaaaa------ggaaaaaaaaacaaaGCAAAACCGAAGAAAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54909258 235 +  59248254 tggctaacacg-gtgaaaccccatctctacta--------------aaaacacaaa-aagtagccgggcgtggtggcgggagcctgtagtcccagctactcgggaggctggggaggaagaattgcttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcactccagcccaggcgacagagcaagactctgtcttg----aaaaaaaaaaa------ggaaaaaaaagcaaaGCAAAACCGAAGAAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47027773 235 +  51301725 tggctaacacg-gtgaaaccccatctctacta--------------aaaacacaaa-aagtagccgggcatggtggcgggagcctgtagtcccagctactcgggaggctgcggaggaagaactgcttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcactccagcctgggcgacagagcaagactctgtcttg----aaacaaaaaaa------ggaaaaaaaagcaaagcaaaaccgAAGAAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46744202 238 +  50890351 tggctaacacg-gtgaaaccccatctctacta--------------aaaacacaaa-aaatagccgggcgtggtggcaggagcctgtagtcccagc-actcgggaggctggggaggaagaattgcttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcactccagcctgggtggcagaacaagactctgtcttgaaaaaaaaaaaaaaa------gaaaaaaaaaGCAAAGCAAAACCGAAGAAAT
i chlSab2.chr6              I 2703 C 0
s calJac3.chr22              45320499 231 +  49145316 tgggtaacaagagcgaaactccatctcaaaaaaaagaaaagaaaagaaaatacaaa-aactagccgggtgtggtg---ggcacttgaaatcccggctactcaggaggctgaggtaggagaatggcttgaatgcaggaggcagaggttgcagtgggcca----------actgcactccagcctgggcgacagagcgagactctatctca----aaaaaaaaaaa----------aaaaaagcaaaGCCAAACCAAAGAC--
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19474914   8 - 122678785 I
e nomLeu3.chr10             102598098 717 - 106955855 I

a score=42582.000000
s hg38.chr19_GL949751v2_alt     32639 15 +   1002683 GTGTGCATCAAAGAG
s panTro4.chr19              58969441 15 +  63644993 GTGTGCATCAAAGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836102 15 +  60714840 GTGTGCATCAAAGAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102598815 15 - 106955855 GTGTGCATCAAAGAG
i nomLeu3.chr10             I 717 C 0
s rheMac3.chr19              59892099 15 +  64156825 GTGTGCATCAAGGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54909493 15 +  59248254 GTGTGCATCAAGTAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028008 15 +  51301725 GTGTGCATCAAGGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46744440 15 +  50890351 GTGTGCATCAAGGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45320730 14 +  49145316 GTGTGTATCAA-GAG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19474914  8 - 122678785 I

a score=1852457.000000
s hg38.chr19_GL949751v2_alt     32654 571 +   1002683 TACAT------CTGCCCTTCTCACCTGTGACCACCAGCTGCAAGTGTTCACTGCTTTCTGACCACTCATGGGAGGCTGTTGTCTTGTAGGCACAAAAGTACCTCCCAGCATCCTTAGGCTTCAGGTCCGTGAAGGGGAATTCAGCTTCGTTTTCTGCCGAGCTCTGTTCCTGCTTGTACCCAGAGTCGTTCACCTTGCGCAGCACAAATGTCACATTCTGGGAATGAGCCTGACACTTCAGGGTCACATTGCTCTCGGCTTCAACCACCG-AGCTGGGCCAGGCGTGGAGGGAGGGCTTGGGCGGTTTCTCTGG-AAACAATTCAGAGTTAATTTGAGT----------------------------CTAGAATT-CAGACGATTAAAGGAAAA-GGTCATGAAGCGTGGGATGCAGGAATAAA---AGTTTAAGTAGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACA-GCCCTGGAAGAGAAATCTCAATGAGAGAAAAATTATGTGCTTGTCCTTGAGTACAAATCCAGCAGAGAACGTATGACTAGCTCTTTATAGGTCTGAGatatatatatatatata--------atgt---------------------------------------------------------------------------------atatatgtatt
s panTro4.chr19              58969456 586 +  63644993 TACAT------CTGCCCTTCTCACCTGTGACCACCAGCTGCAAGTGTTCACTGCTTTCTGACCACTCATGGGAGGCTGCTGTCTTGTAGGCACAAAAGTACCTCCCAGCATCCTTAGGCTTCAGGTCCGTGAAGGGGAATTCAGCTTCCTTTTCTGCCGAGCTCTGTTCCTGCTTGTACCCAGAGTCGTTCACCTTGCGCAGCACAAATGTCACATTCTGGGAATGAGCCTGACACTTCAGGGTCACATTGCTCTCGGCTTCAACCACCGGAGCTGGGCCAGGCGTGGAGGGAGGGCTTGGGCGGTTTCTCTGG-AAACAATTCAGAGTTAATTTGAGT----------------------------ATATAATTTCAGACGATTAAAGGAAAAAGGTCATGAGGAGTGGGATGCAGGAATAAATAAAGTTTAAGTAGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACAAGCCCTGGAAGAGAAATCTCAATGAGAGAAAAATTATGTGCTTGTCCTTGAGTACAAATCCAGCAGAGAACGTATGACTAGCTCGTTATAGGTCTGAGatatatatatatatatatatgtgttatgt---------------------------------------------------------------------------------atatatgtatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836117 580 +  60714840 CACATCTGAAGCTGCCCTTCTTACCTGTGACCACCAGCTGCAAGCGTTCACTGCTTTCTGACCACTCATGGGAGGCTGTTGTCTTGTAGGCACAAAAGTACCTCCCAGCATCCTTAGGCTTCAGGTCCGTGAAGGGGAATTCAGCTTGGTTTTCTGCCGAGCTCTGTTCCTGCTTGTACCCAGAGTTGTTCACCTTGCACAGCACAAATGTCACATTCTGGGAATGAGCCTGACACTTCAGGGTCACATTGCTCCCGGCTTCAACCACCG-AGCTGGGCCAGGCGTGGAGGGAGGGCTTGGGCAGTTTCTCTGG-AAACAATTCAGAGTTAATTTGAGT----------------------------CTAGAATT-CAGACGATTAAAGGAAAA-GGTCATGAAGCGTGGGATGCAGGAATAAATAAAGTTTAAGTAGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACA-GCCCTGGAAGAGAAATCTCAATGAGAGAAAAATTATGTGCTTGTCCTTGAGTACAAATCCAGCAGAGAATGTATGACTAGCTCGTTATAGGTCTGAGatatatatatatgtatt--------atgt---------------------------------------------------------------------------------atatatgtatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102598830 572 - 106955855 TACATCTGAGGCTGCCCTTCTCACCTGTGACCACCAGCTGCAAGTGTTCACTGCTTTCTGACCACTCATGGGAGGCTGTTGTCTTGTAGGCACAAAAGTACCTCCCAGCATCCTTAGGCTTCAGGTCTGTGAAGGGGAATTCGGCTTCATTTTGTGCCGAGCTCTGTTCCTGCTTGTACCCAGAGTCGTTCACCTTGCGCAGCACAAATGTCACATTCTGGGAATGAGCCTGACACTTCAGGGTCACATTGCTCTCGGCTTCAACCACCG-AGCTGGGCCAGGCATGGAGGGAGGGCTTGGGCGGTTTCTCTGG-AAACAATTCAGAGTTAATTTGAGT----------------------------CTAGAATT-CAGACGATTAAAGGAAAA-GGTCATGAAGCGTGGGATGCAGGAATAAATAAAGTTTAAGTAGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACA-GCCCTGGAAGAGAAATCTCAATGAGAGAAGAATTATGTGCTTGTCCCTGAGTACAAATCCAGCAGAGAACATATGACTAGCTCGTTATAGGTCTGAGatatagatatatgtatt-------------------------------------------------------------------------------------------------atgtatt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59892114 576 +  64156825 CACATCTGAGGCTA-CTTTCTCACCTGTGATCACCAGCTCCAAGTGTTCACTGCTTTCTGACCCCTCACGGGAGGCTGTTGTCTTATAGGCACAAAAGTAGCTCCCAGCATCCTCAAGCTTCAGGTCCGTGAAGTGGAATTCAGCTTCGTCTTCTGTCAAGAACTGTTCCTGCTTGTACCCAGAGTCATTCACCTTGAGCAGAATGAATGTCACATTCTTGGAAGGAGCCTGACACTTCAGGGTCACGTTGCTCCGGGCTTCAACCACCG-AGCTAGGCCAGGCGTGGAGGGAGGGCTTGGGCAGTTTCTCTGG-AAAGAATTCAGAGTTAATTTGAGT----------------------------CTAGAATT-CAGACGATTAAAGGAAAA-GGTCATGAAGTGTGGGATGCAGGAATAAATAAAGTTTAAGTGGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACA-GTCCTGGAAGAGAAATCTCAATGAGAGAAAAATTATGTGCTTGTCTTTGAGTACAAATCCAGCAGAGAACA-ATGACTAGCTCATTATAGGTCT--Aatatatatatatgtatt--------atgt---------------------------------------------------------------------------------atatatgtatt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54909508 576 +  59248254 CACATCTGAGGCTA-CCTTCTCACCTGTGATCACCAGCTCCAAGTGTTCACTGCTTTCCGACCCCTCACGGGAGGCTGTTGTCTTATAGGCACAAAAGTAGCTCCCAGCATCCTCAAGCTTCAGGTCCGTGAAGTGGAATTCAGCTTCGTCTTCTGTCGAGAACTGTTCCTGCTTGTACCCAGAGTCATTCACCTTGAGCAGAATGAATGTCACATTCTTGGAAGGAGCCTGACACTTCAGGGTCACGTTGCTCCGGGCTTCAACCACCG-AGCTAGGCCGGGCGTGGAGGGAGGGCTTGGGCAGTTTCTCTGG-AAAGAATTCAGAGTTAATTTGAGT----------------------------CTAGAATT-CAGACGATTAAAGGAAAA-GGTCATGAAGTGTGGGATGCAGGAATAAATAAAGTTTAAGTGGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACA-GTCCTGGAAGAGAAATCTCAATGAGAGAAAAATTATGTGCTTGTCTTTGAGTACAAATCCAGCAGAGAACA-ATGACTAGCTCATTATAGGTCT--Aatatatatatatgtatt--------atgt---------------------------------------------------------------------------------atatatgtatt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028023 658 +  51301725 CACATCTGAGGCTACCCTTCTCACCTGTGGTCACCAGCTGCAAGTGTTCACTGCTTTCTGACCACTCATGGGAGGCTGTTGTCTTGTAGGCACAAAAGTAGCTCCCAGCATCCTTAAGCTTCAGGTCCGTGAAGTGGAATTCAGCTTCGTCTTCTGTCGAGAACCGTTCCTGCTTGTACCCAGAATCATTCACCTTGCGCAGAATGAATGTCACATTCTTGGAAGGAGCCTGACACTTCAGGGTCACGTTGCTCCGGGCTTCAACCACTG-AGCTAGGCCGGGCGTGGAGGGAGGGCTTGGGCAGTTTCTCTGG-AAAGAATTCAGAGATAATTTGAGT----------------------------CTAGAATT-CAGACGATTAAAGGAAAA-GGTCATGAAGTGTGGGATGCAggaataaataaagtttaaatgggagaaaactcaccattctttttctcatcttcgTAGCCCAGACACA-GTCCTGGAAGAGAAATCTcaatgagagaaaaattatgtgctTGTCTTTGAGTACAAATCCAGCAGAGAACA-ATGACTAGCTCATTATAggtct--aatatatatatatgtatt--------atgtatatatgtattatgtatatatgtattatgtatatatgtgtacatatagttacacatatgtatatatgtattatatatatgtatatatgtatt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46744455 577 +  50890351 CACATCTGAGGCTACCCTTCTCACCTGTGATCACCAGCTGCAAGCGTTCACTGCTTTCTGACCACTCATGGGAGGCTGTTGTCTTGTAGGCACAAAAGTAGCTCCCAGCATCCTTAAGCTTCAGGTCCGTGAAGTGGAATTCAGCTTCGTTTTCTGTCGAGAACTGTTCCTGCTTGTACCCAGAGTCGTTCTCCTTGAGCAGAATGAATGTCACATTCTTGGAAGGAGCCTGACACTTCAGGGTCACGTTGCTCCGGGCCTCAACCACCG-AGCTAGGCCAGGCGTGGAGGGAGGGTTTGGGCAGTTTCTCTGG-AAAGAATTCAGAGTTCATTTGAGT----------------------------CTAGAATT-CAGACAATTAAAGGAAAA-GGTCATGAAGTGTGGGATGCAGGAATAAATAAAGTTTAAGTGGGAGAAAACTCACCATTCTTTTTCTCATCTTCGTAGCCCAGACACA-GTCCTGGAAGAGAAATCTCAATGAGAGAAAAATTATGTGCTTGTCTTTGAGTACAAATCCAGCAGAGAACA-ATGACTAGCTCATTATAGGTCT--Aatatatatatatgtatt--------atgt---------------------------------------------------------------------------------atatatgtatt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45320744 584 +  49145316 CGCCTCTGAGACGGCCCTTCTCACCTGTGACCACCAGCTGCACGTGCTCACTGCTTTCTGACCACTGGTGGGAGACTGCTGTCTTGTAGGCACAAAAGTACCTCCCAGCATCCTTGGGCTTCAAGTGCATGAAGGGGAATTCCGCTTCGCTTCCTGCCGAGCTCTGTTCGCGCTGGAATGCAGAGTCGTTCACCTTGCGCAGCGTGAATGTCACATTCTGGGAAGGAGCCCGACACTTCAGGGTCACGTTGCTCTTGGCTTCAGCCACCG-AGCTGGGCCAGGCGTGGAGGGAGGGCTTGGACAGTTTCTCTGG-AAAGAATTCAGAGTTAATTCGAGTCTGCATGTGGATG-------------GCCTGGAATT-CAGAGGATTCAAGAAAAA-GGTCATGAAATGTGGGGTGCAGGAATAA----AGTGTAAGTGGGAGAAAACTCACCGTTCTCTTTGTCATCCTCATAGCCCAGACACA-GCCCTGGAAGAGAAATGTCAAT--GAGAAGAATTACGCACTTGTCTTCGAGTACAAATCCAGCAGAGAAATCATGACCAGCTCGTTACAGGTCT--GATATGTATATA---ATA--------ATGC---------------------------------------------------------------------------------ATGTATTTtat
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19474922 598 - 122678785 ------TGAAGCTGCCTTTCTCACCTTTGACCTGCAGCCACAGGTGTTCACTCTCTTCTGACCACTCCTGGGAGACCATTGTCTTGTAGGCACAAAAGTACATCCCAGCATCCTTCGGCTCCAGGTGAGTGAGGAGGAATTCAGCCTCATGTCCTGTGGATCTCTGCTCCTGCCTGTACCCAGAGTCCTGCAGCTTCCCCAGCATGAATGTCACATTCTGGAAGTGAGACTGGCACCTGAGGCTCACGTTGCCTCTGTGTTCAACCATGT-TGCTGGGCAAGGCACTGAGCGTGGGTTTGGGAAGCATTTCTGGCAAAGAATTCAGAGTTAGTCTGACTCTTCATCATGACATCCACCAATGCCCTCCTAGAATT-CAGAGGATTAAAGAGAAA----------ATATAGGATGCAGGAACAGATAGAGTTTA--TGCGAGAAAACTCACCATTCTTTTTCTCGTCTTCAAAGCCCAGGGAAA-GCCCTGGAAGAGAAACCCTTATGAGACATAAATTACATACTCGTGTTTGAGTATATATCAGGCAGAGAGTGCATGACTAATTTGTTAAAGATCC--ATCTTATTTCTTTtttcttttaaagatttt---------------------------------------------------------------------------------atttatttatt
i canFam3.chr1              I 8 I 134

a score=111275.000000
s hg38.chr19_GL949751v2_alt     33225 74 +   1002683 atatata-ataaat--------------------------gtattaagtatatgtacacatattacatata---atacatatataaatataatatatatattaa----
s panTro4.chr19              58970042 70 +  63644993 atatata-ataaat--------------------------gtattaagtata----cacatattacatata---atacatatataaatataatacatatattaa----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836697 74 +  60714840 atatata-ataaat--------------------------gtattaagtatatgtacacatattacatata---atacatatataaatataatacatatattaa----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599402 74 - 106955855 atatata-ataaat--------------------------atattaaatgtatgtacacatattatacata---atacatatataaatataatacatatattaa----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59892690 67 +  64156825 atacata-atacat--------------------------atattaac--tatgtacacatattacatata---atacatatataaatat-----atctattaa----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54910084 67 +  59248254 atacata-atacat--------------------------atattaac--tatgtacacatattacatata---atacatatataaatat-----atctattaa----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028681 95 +  51301725 atacata-atacatatgtatatatgtataatacataatacatataaactatatgtacacatattacatata---atacatatataaatat-----atctattaa----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46745032 57 +  50890351 atacata-at------------------------------atattaactctatgtacat---------------gtacatatataaatat-----atctattaaatgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45321328 71 +  49145316 aaatgtacatacat--------------------------ata-------tatgcagatataatatagatatacataaatgcatatatgtgaattatatattat----
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19475520 134 - 122678785 I

a score=279390.000000
s hg38.chr19_GL949751v2_alt     33299 123 +   1002683 atatatgtattacatatatgtatatatTTTTGGCAGATATCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCCATTGTTTGTCATTCAGAAGCTACGTGTATGGAGAAAATTCC-AGCAAC---ttcttc-
s panTro4.chr19              58970112 125 +  63644993 atatatgtattacatatatgtatatatTTTTGGCAGATATCTCCCCAGACTTA---------CCTCTTACTTTTGGTTCCATTGTTTGTCATTCAGAAGCTACGTGTATGGAGAAAATTCCCAGCAAC---ttcttc-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836771 123 +  60714840 atatatgtattacatatatgtatatatTTTTGGCAGCTATCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCCATTGTTTGTCATTCAGAAGCTACGTGTATGGAGAAAATTCC-AGCAAC---TTCttc-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599476 122 - 106955855 acatatgtattacatatatgtatatatTTTTGGCAAATATCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCCATTGTTTGTCATTCAGAAGCTAGGTGTATGGAGAAAATTCC-AGCAAC---ttctt--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59892757 121 +  64156825 atgtatgtattacatgtatgtatatatTTTTGGCAGCTATCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCCATTGTTTGTCATTCAGAAGCTATGTGTATATAGAAAATTCC-AGCAAA----tttt--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54910151 122 +  59248254 atgtatgtattacatgtatgtatatatTTTTGGCAGCTATCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCCATTTTTTGTCATTCAGAAGCTATGTGTATATAGAAAATTCC-AGCAAA---ttttt--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028776 125 +  51301725 atgtatgtattacatgtatgtatatatttttggcagCTATCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCCATTGTTTGTCATTCAGAAGCTATGTGTATATAGAAAATtcc-agcaactttttttt--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46745089 122 +  50890351 atgtatgtattacctgtatgtatatatTTTTGGCAGATGTCTCCCCAGACTTA---------CCTCTTACTTTTG-TTCTATTGTTTGTCATTCAGAAGCTATGTGTATATAGAAAATTCC-AGCAAC---ttttt--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45321399  64 +  49145316 atatttatattatgta-----atatatt------aaatgt------agacata-----------------tttta-------------------------cacatatatatat---atttt----------ttatt--
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19475654 129 - 122678785 acgtaggtgttccATCCATCT---TATTTCTTGAAGGCACTTCTTTGGGTTGATTTTTTTAACCTGTTACTTATG-TCCCATTGTTTCTCATTTTGTATATTCATTTATATACAAAATTCC-AGCAAC---CTTTT-C
i canFam3.chr1              I 134 C 0

a score=58119.000000
s hg38.chr19_GL949751v2_alt     33422 34 +   1002683 tttcttttttttttttttttttt---gaaatgtagtc
s panTro4.chr19              58970237 30 +  63644993 tttcttttttttttttttttttt----aaatgt---c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836894 37 +  60714840 tttctttcttttttttttttttttttgaaatgtagtc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599598 26 - 106955855 --------tcttttttttttttt---gagatgtagtc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59892878 26 +  64156825 --------tttttttttcttttt---gagatgtagtc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54910273 26 +  59248254 --------tttttttttcttttt---gagatgtagtc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028901 26 +  51301725 --------tttttttttcttttt---gagatgtagtc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46745211 26 +  50890351 --------tttttctttcttttt---gagatgtagtc
i chlSab2.chr6              C 0 T 3728
s calJac3.chr22              45321463 26 +  49145316 --------ttttttttatttttt---gaaacggagtt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19475783  0 - 122678785 C

a score=118469.000000
s hg38.chr19_GL949751v2_alt     33456 40 +   1002683 ttgctc-tgttgcacaggctggagtgcaatgacatgatctc
s panTro4.chr19              58970267 40 +  63644993 ttgctc-tgttgcccaggctggagtgcaatgacatgatctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836931 40 +  60714840 ttgctc-tgttgcccaggctggagtgcaatgacatgatctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599624 40 - 106955855 ttgctc-tgttgcccaggctggagtgcaatgacatgatctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59892904 40 +  64156825 ttactc-tgttgcccaggctggagtgcaatggcacgatctc
i rheMac3.chr19             C 0 I 222
s macFas5.chr19              54910299 40 +  59248254 ttactc-tgttgcccaggctggagtgcaatggcacgatctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028927 40 +  51301725 ttactc-tgttgcccaggctggagtgcaatggcacgatctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46741509 40 +  50890351 ttgctc-tgtcgcctaggctggagtgcagtggcatgatctc
i chlSab2.chr6              T 3728 C 0
s calJac3.chr22              45321489 41 +  49145316 tcgctcttgttacccaggctggagtgcaatggcgagatctc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19475783  0 - 122678785 C

a score=496418.000000
s hg38.chr19_GL949751v2_alt     33496 233 +   1002683 agttcactgcaacctccgcctcccaggttcaagcaattttcctgcctcagcctcccgagtagctgggactacag--gcacccgccaccacacctggctaatttttgcatttttagtagagac-agggtctcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcccccggc-cCA
s panTro4.chr19              58970307 233 +  63644993 agttcactgcaacctccgcctcccaggttcaagcaattttcctgcctcagcctcctgagtagctgggattacag--gcacccgccaccacgcctggctaatttttgtatttttagtagagac-agggtctcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcccccggc-cCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55836971 233 +  60714840 agttcactgcaacctccgcctcccaggttcaagcgattttcctgcctcagcctcccgagtagctgggactatag--gcacctgccaccacacctggctaatttttgtatttttagtagagac-agggtctcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgcgaggattacaggcgtgagccaccgctcccggc-cCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599664 233 - 106955855 agttcactgcaacctccgcctcccaggttcaagcgattttcctgcctcagcctcctgagtagctgggactacag--gcacccgccaccacgcctggctaatttttatatttttagtagagag-agggtctcaccatgttggccaggctggtcttgaactcctgacctcagttgatccacacgcctcagcctcccaaagtgctgggattatagacgtgagccaccgtgcccggc-cCA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54910339 231 +  59248254 agttcactgcaacctccgcctcccaggtttaagtgattctcctgccttagcctccccagtagctgggactacag--gcgcccaccaccatgcctggctaatttttgtatttttagtagagacaagagtctcaccatattggccaggctgatcttgaactcctggcctcaggtgatccgcctgcctcggactcccaaagttctgggattacaggtacgagctaccgcacctggc----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47028967 231 +  51301725 agttcactgcaacctccgcctcccaggtttaagtgattctcctgccttagcctcccgagtagctgggactacag--gcgcccgccaccatgcctggctaatttttgtatttttagtagagacaagagtctcaccatattggccaggctgatcttgaactcctggcctcaggtgatccgcctgccttggcctctcgaagttctgggattacaggtacgagctaccgcacctggc----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46741549 232 +  50890351 agctcattgcaatctccacctcctgggttcatgtaattcacctgccttagcctcccgagtagctgggactacag--gcgcccgccaccatgcctggctaatttttgtatttttagtagagacaagagtctcaccatattggccaggctgatcttgagctcctggcctcaggtgatccgcctgcctcggcctcccaaagttctgggattacaggtacgagctaccgcacctggcc---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45321530 233 +  49145316 agctcaccgcaacctccgcctcctgggttcaggcaattctcctgcctccgcctcccaagtagctgagattacaggcgcgcacgccaccatgcccagctaatttttgtatttttagtagagac-ggggtttcaccatgttgaccaggatggtctcgatctcttgacctc--gtgatccacccgcctcagcctcccaaagtgctgggattacaggcttgagccactgcgcccagc-cTa
i calJac3.chr22             C 0 I 1387
e canFam3.chr1               19475783   0 - 122678785 C
e rheMac3.chr19              59892944 222 +  64156825 I

a score=5001.000000
s hg38.chr19_GL949751v2_alt     33729 10 +   1002683 GCAACCTTTT
s panTro4.chr19              58970540 10 +  63644993 GCAACGTTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837204 10 +  60714840 GCAACCTTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599897 10 - 106955855 GCAACCTTTT
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19475783  0 - 122678785 C
e calJac3.chr22              45321763 1387 +  49145316 I
e chlSab2.chr6               46741781  0 +  50890351 C
e papAnu2.chr19              47029198  0 +  51301725 C
e macFas5.chr19              54910570  0 +  59248254 C
e rheMac3.chr19              59892944 222 +  64156825 I

a score=2100.000000
s hg38.chr19_GL949751v2_alt     33739 1 +   1002683 C
s panTro4.chr19              58970550 1 +  63644993 C
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837214 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599907 1 - 106955855 C
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59893166 1 +  64156825 c
i rheMac3.chr19             I 222 C 0
s macFas5.chr19              54910570 1 +  59248254 c
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029198 1 +  51301725 c
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19475783 0 - 122678785 C
e calJac3.chr22              45321763 1387 +  49145316 I
e chlSab2.chr6               46741781 0 +  50890351 C

a score=264207.000000
s hg38.chr19_GL949751v2_alt     33740  98 +   1002683 TGATGTATTGAATTGCTTTCATGAGTAATC---CTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTGGTATTTTCTGTGATTGCAG---------TG
s panTro4.chr19              58970551  98 +  63644993 TGATGTATTGAATTGCTTTCACAAGTAATC---CTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTGGTATTTTCTGTGATTGCAG---------TG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837215 106 +  60714840 TGATGTATTGAATTGCTTTCATGAGTAATCCATCTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTGGTATTTTCTGTGATTGCAG----ttttttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102599908 101 - 106955855 TGATGTATTGAATTGCTTTCACGAGTAATCCTTCTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTTGTATTTTCTGTGATTGCAG---------TG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59893167 110 +  64156825 TGATGTATTGAATTGCTTTCACGAGTAATCATTCTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTTGTATTTTCTGTGATTGCAGTAttttgtttg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54910571 110 +  59248254 TGATGTATTGAATTGCTTTCACAAGTAATCATTCTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTTGTATTTTCTGTGATTGCAGTAttttgtttg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029199 110 +  51301725 tgatgtATTGAATTGCTTTCACGAGTAATCATTCTTTCACCATCTAGAAATTGTTCAACATTCACCTatgcttttttcttgtattttctgtgattgcagtattttgtttg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46741781 110 +  50890351 TGATGTATTGAATTGCTTTCACGAGTAATCATTCTTTCACCATCTAGAAATTGTTCAACATTCACCTATGCTTTTTTCTTGTATTTTCTGTGATTGCAGTAttttgtttg
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19475783  97 - 122678785 TGATCTATCATGTTGCTTTCACG----ATCAGTCTTTCACCATCTAAATATCATCACATATTTACTTGTATTTTCCTCTCCTGCTTTCTATGACTGAACTC---------
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45321763 1387 +  49145316 I

a score=444076.000000
s hg38.chr19_GL949751v2_alt     33838 195 +   1002683 ttttgttttgttttgagacagagtctcgctgtgtcacccaggctggagtgcagtggtgcagtctcagctcactgcaacctcctccaccccctgggttcaagtgatactcgtacctcaggctccagagtagctgggactacaggtgtgtgccatcgtgcccagctaatttttgttgttgttgt------------------------tgtagagatgggg
s panTro4.chr19              58970649 192 +  63644993 ttttgttttgttttgagacagagtctcgctgtgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctcctccaccccctgggttcaagtggtactcgtacctcaggctccagagtagctgggactacaggtgtgtgccatcgtgcccagctaatttttgttgttgttgt---------------------------agagatgggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837321 219 +  60714840 tttcgttttgttttgagacagagtctcgctgtgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctcctccaccccctgggttcaagtgatactcgtacctcagggtccagagtagctgggactaccggtgtgcgccatcacgcccagctaatttttgttgttgttgttgttgttgttgttgttgttgttgttgtagagatgggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102600009 198 - 106955855 ttttgttttgttttgagacagagtctcactgtgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctcctccaccctctgggttcaagtgatacccgtacctcaggctccagagtagctgggactacaggtgtgtgccatcatgcccagctaatttttgttgttgttgt---------------------tgttgtagagatgggg
i nomLeu3.chr10             C 0 M 1769
s rheMac3.chr19              59893277 195 +  64156825 ctttgtttcgttttgagacagagtctcgctgtgtcacccaggctggagtgtggtggtgcaatctcagctcactgcaacctcctacaccccctgggttcaagtgattcttgtacctcagtctccagagtagctgggactacaggtgtgcaccacgatgcccaactaattgttgttgttgttgt------------------------tgttgagatgggg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54910681 192 +  59248254 ctttgtttcgttttgagacagagtctcgctgtgtcacccaggctggagtgtggtggtgcaatctcagctcactgcaacctcctacaccccctgggttcaagtgattctcgtacctcagtctccagagtagctgggactacaggtgtgcaccacgatgcccaactaa---ttgttgttgttgt------------------------tgttgagatgggg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029309 195 +  51301725 ctttgtttcgttttgagacagagtctcgctgtgtcacccaggctggagtgcggtggtgcaatctcagctcactgcaacctcctacaccccctgggttcaagtgattctcgtacctcagtctccagagtagctgggactacaggtgtgcaccacgatgcccaactaattgttgttgttgttgt------------------------ttttgagatgggg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46741891 186 +  50890351 ctttgtttcgttttgagacagagtctcgctgtgtcacccaggctggagtgcggtggtgcaatctcagctcactgcaacctcctacaccccctgggttcaagtgattctcatacctcagtctccagagtagctgggactacaggtgtgcaccacgatgcccaactaa---------ttgttgt------------------------tgttgagatgggg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19475880   0 - 122678785 C
e calJac3.chr22              45321763 1387 +  49145316 I

a score=211757.000000
s hg38.chr19_GL949751v2_alt     34033 117 +   1002683 tttcaccatgttgcccaggctggtctcaaactcctgagctcaagtgatccacccgcctcagcctcccaaagcgctgggattacaggcatgagccaccgtgcccggccTGATTGCAGT
s panTro4.chr19              58970841 117 +  63644993 tttcaccatgttgcccaggctggtctcaaactcctgagctcaagtgatccacccgcctcagcctcccaaagcgctgggattacaggcatgagccactgcacacggccTGATTGCAGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837540 117 +  60714840 tttcgccatgttgcccaggctggtctcaaactcctgagctcaagtgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagaaaccgcgcccagccTGATTGCAGT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59893472 117 +  64156825 tttcaccatattgcccaggctggtctcaaactcctgacctcaagtgatccgtctgcctcagcctcccaaagtgctgagattacaggcatgagccaccgtgcccgaccTGATTGCAGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54910873 117 +  59248254 tttcgccatattgcccaggctggtctcaaactcctgaccgcaagtgatccgtctgcctcagcctcccaaagtgctgagattacaggcatgagccaccgtgcccgaccTGATTGCAGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029504 117 +  51301725 tttcgccatattgcccaggctggtctcaaactcctgacctcaagtgatccatctgcctcagcctcccaaagtgctgagattacaggcatgagccaccgtgcccgacctgaTTGCAGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742077 117 +  50890351 tttcgccatattgcccaggctggtctcaaactcctgacctcaagtgatccatctgcctcagcctcccaaagtgctgggattacaggcatgagtcaccgtgcccgaccTGATTGCAGT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19475880   0 - 122678785 C
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M

a score=75688.000000
s hg38.chr19_GL949751v2_alt     34150 45 +   1002683 TTT-ACCCTTGCCACTTAAATAATGCAAAGG----TTATTTTATCGTG----GA
s panTro4.chr19              58970958 46 +  63644993 TTTTACCGTTGCCACTTAAATAATGCAAAGG----TTATTTTATCGTG----GA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837657 46 +  60714840 TTTTACCCTTGCCACTTAAATAATGCAAAGG----TTATTTTATCGTG----GT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59893589 46 +  64156825 TTTTACCCTTGCCACTTAAATAATGCAAACG----TTATTTTCCCGTGGA----
i rheMac3.chr19             C 0 I 4
s macFas5.chr19              54910990 44 +  59248254 TTTTACCCTTGCCACTTAAATAATGCAAACG----TTATTTTCCCGTG------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029621 44 +  51301725 TTTTACCCTTGCCACTTAAATAATGCAAACG----TTATTTTCCCATG------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742194 46 +  50890351 TTTTACCCTTGCCACTTAAATAATGCAAACA----TTATTTTCCCGTG--GA--
i chlSab2.chr6              C 0 I 4
s canFam3.chr1               19475880 49 - 122678785 -TTCACCTTTGTCACTTAGATAACGCAATGGTTATTTATTTTACTGTG----GA
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M

a score=2166.000000
s hg38.chr19_GL949751v2_alt     34195 3 +   1002683 GTG
s panTro4.chr19              58971004 3 +  63644993 GTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837703 3 +  60714840 GTG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54911034 1 +  59248254 --G
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029665 1 +  51301725 --G
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19475929 3 - 122678785 GTG
i canFam3.chr1              C 0 I 1
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M
e chlSab2.chr6               46742240 4 +  50890351 I
e rheMac3.chr19              59893635 4 +  64156825 I

a score=910.000000
s hg38.chr19_GL949751v2_alt     34198 1 +   1002683 A
s panTro4.chr19              58971007 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837706 1 +  60714840 A
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54911035 1 +  59248254 A
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029666 1 +  51301725 A
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19475932 1 - 122678785 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M
e chlSab2.chr6               46742240 4 +  50890351 I
e rheMac3.chr19              59893635 4 +  64156825 I

a score=33669.000000
s hg38.chr19_GL949751v2_alt     34199 155 +   1002683 GAGTGGTGGGttttttttttt-----------------------------------------tttttatttttcgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcaccgcaagctctgcctcccgggttcacgccattctcctgcctcggcctcccgagtagctgggacta
s panTro4.chr19              58971008 156 +  63644993 GAGTGGTGGGttttatttttta----------------------------------------tttttatttttcgagatggagtctcgctctgtcacccaggctagagtgcagtggcacgatctcggctcaccgcaagctctgccttccgggttcacgccattctcctgcctcggcctcccgagtagctgggacta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55837707 195 +  60714840 GAGAGGTAGGTtttattttttgtatttatttatttatttatttatttatttatttatttatttatttattttttgagacggggtctcgctctgtcacccaggctggagtgaaatggctcgatctcggctcattgcaagctctgcctcccgggttcacaccattctcctgcatcaacctcacgagtag-tgggacta
i ponAbe2.chr19             C 0 I 1515
e canFam3.chr1               19475932   1 - 122678785 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M
e chlSab2.chr6               46742240   4 +  50890351 I
e papAnu2.chr19              47029667   0 +  51301725 C
e macFas5.chr19              54911036   0 +  59248254 C
e rheMac3.chr19              59893635   4 +  64156825 I

a score=14920.000000
s hg38.chr19_GL949751v2_alt     34354 164 +   1002683 caggcacccgccaccaagcccagctaattaatttttttgtatttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatccacccgcctcggactcccaaagtgctgggattacaggcatcagccaccgcgcccggcc
s panTro4.chr19              58971164 164 +  63644993 caggcacccgccaccacgcccaggtaattaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcggactcccaaagtgctgggattacaggcatcagccaccgcgcccggcc
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19475932   1 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M
e chlSab2.chr6               46742240   4 +  50890351 I
e papAnu2.chr19              47029667   0 +  51301725 C
e macFas5.chr19              54911036   0 +  59248254 C
e rheMac3.chr19              59893635   4 +  64156825 I

a score=1704.000000
s hg38.chr19_GL949751v2_alt     34518 4 +   1002683 GAGA
s panTro4.chr19              58971328 4 +  63644993 GAGA
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54911036 4 +  59248254 AAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029667 4 +  51301725 AAGG
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19475933 4 - 122678785 GAGC
i canFam3.chr1              I 1 C 0
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M
e chlSab2.chr6               46742240 4 +  50890351 I
e rheMac3.chr19              59893635 4 +  64156825 I

a score=141927.000000
s hg38.chr19_GL949751v2_alt     34522  92 +   1002683 GGAGGGTTTTCTTGCTCAATTCCAATAGAGAGAATCTGCTCCCCCTTCCCCGTGTCTTC--------------------------TGGTCCCAAATACTCTCCTCACTTTAGCTTTGG
s panTro4.chr19              58971332  92 +  63644993 GGAGGGTTTTCTTGCTCAATTCCAATAGAGAGAATCTGCTCCCCCTTCCCCGTGTCTTC--------------------------TGGTCCCAAATACTCTCCTCACTTTAGCTTTGG
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59893639  92 +  64156825 GGAGGGTTTTCTTGCTCAATTCCAATAGAGAGAATCTGCTCCCCCTTCCCCGTGTCTTC--------------------------TGGTTCCAAGTACTCCCCTCACTTTAGCTTTGG
i rheMac3.chr19             I 4 C 0
s macFas5.chr19              54911040  92 +  59248254 GGAGGGTTTTCTTGCTCAATTCCAATAGAGAGAATCTGCTCCCCCTTCCCCGTGTCTTC--------------------------TGGTTCCAAGTACTCCCCTCACTTTAGCTTTGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029671  92 +  51301725 GGAGGGTTTTCTTGCTCAATTCCAATAGAGAGAATctgctcccccttccccatgtCTTC--------------------------TGGTTCCAAGTACTCCCCTCACTTTAGCTTTGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742244  92 +  50890351 GGAGGGTTTTCTTGCTCAATTCCAATAGAGAGAATCTGCTCCCCCTTCCCCGTGTCTTC--------------------------TGGTTCCAAGTACTCCCCTCACTTTAGCTTTGG
i chlSab2.chr6              I 4 C 0
s canFam3.chr1               19475937 116 - 122678785 AGAGGGTTTCCTCTCT-GATTCAAATGGGGAGAAACCACTCTCTCTGCCCAGGTTCTTCTTTTCATGAAGAATTTGAGACATTCATGGTCCTAAATGCCCTTTCCA-TGTGGCTTTGA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102600207 1769 - 106955855 M

a score=690955.000000
s hg38.chr19_GL949751v2_alt     34614 360 +   1002683 TTTCCACTTACATTATCCCCTCCCTCTTCTGTGTTCTGTTCTCTACATTCCCCGCTGGGAAGGTAGCGTCTTAAACTTGGGTGGAAA-ATGGGATGTCAGTCATGGGGCTTGTTTCAGGGTGAAGTTACGTAGAATTTAGGTAGAAATTCTCTAGA-GCCACGACAGTGTCTCAGGACATTGGTTCCTTGTT--GACACAGGTGCCGATACAG-AACGTGACCCCCCACCAAGCTTCACCACAGAGGAATGAGGTGGAGGCCTCACGATGGACCGAAGCTGCGTTGGCAGCGAGATTAGCTGGGATTGGCAGGTAGGAAACAGCCTCTGGGTGGGCAGGGCATCCCAGGACTCAGGCTCTGTTTT
s panTro4.chr19              58971424 360 +  63644993 TTTCCACTTACATTATCCCCTCCCTCTTCTATATTCTGTTCTCTACATTCCCTGCTGGGAAGGGAGCGTCTTAAACTTGGATGGAAA-ATGGGATGTCAGTCATGGGGCTTGTTTCAGGGTGAAGTTACGTAGAATTTAGGTAGAAATTCTCTAGG-GCCACGACAGTGTCTCAGGACATTGGTTCCTTGTT--GACACAGGTGCCGATACAG-AACGTGACCCCTCACCAAGCTTCACCACAGAGGAATGAGGTGGAGGCCTCACGATGGACCGAAGCTGCGTTGGCACCGAGATTAGCTGGGATTGGCAGGTAGGAAACAGCCTCTGGGTGGGCAGGGCATCCTAGGACTTAGGCTCTCTTTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102602001 360 - 106955855 TTTCCACTTACATTATCCCCTCCCTCTTCTGTGTTCTGTTCTCTACATTCCCCGCCGGGAACGGAGCGTCGTAAACTTGGGTGGAAA-ACGGGATGTCAGTCATGGGGCTTGTTTCA-GGTGAAGTTACCTAGAATTTAGGTAGAAATTCTCTAGA-GCCACGAGAGTGTCTCAGGACATTGGTTTCTTGTT--GACACAGGTGCCGATGCAGAAACGTGACCCCCCACCAAGCTTCACCGCAGAGGAATGAGGTGGAGGCCTCACGATGGACCGAGGCTGTGTTGGCAGCGAGATTCGCTGGGATTGGCAGGTAGGAAACAGCCTCTGCGTGGGCAGGGCATCCCAGGACTCAGGCTCTCTTTT
i nomLeu3.chr10             M 1769 C 0
s rheMac3.chr19              59893731 351 +  64156825 TTTCCACTTACATCATCCCCTTTCTCTTCTATGTTCTGTTCTCTATATTCCCTGCGGGGAAGGGAGCGTCATAAACTTGCGTGGAAA-ATGGGACGTCAGTCATGGGGCTTGTTTCAGGGTGAAGTTAGGTAGAATTGAGGTAGAATTTCTCTAGA-GCCA-------GTCTCAGGACATTGGTTCCTTGTT--GACGCAGGTACCGACGCAG-AACGTGACCCCACACCAAGCTTCACCGCAAAGGAATGAGGTGGA-GCCTCACGATGGACCGAGGCTGCGTTGGCAGCGAGATTGACTGGGATTGGCAGGTAGGAAACAGCCTCTGAAT-GGCAGGGCATCCCAGGACTCAGGCTCTCTTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54911132 351 +  59248254 TTTCCACTTACATCATCCCCTTTCTCTTCTATGTTCTGTTCTCTATATTCCCTGCGGGGAAGGGAGCGTCATAAACTTGCGTGGAAA-ATGGGACGTCAGTCATGGGGCTTGTTTCAGGGTGAAGTTAGGTAGAATTTAGGTAGAATTTCTCTAGA-GCCA-------GTCTCAGGACATTGGTTCCTTGTT--GACGCAGGTACCGACGCAG-AACGTGACCCCACACCAAGCTTCACCGCAAAGGAATGAGGTGGA-GCCTCACGATGGACCGAGGCTGCGTTGGCAGCGAGATTGACTGGGATTGGCAGGTAGGAAACAGCCTCTGAAT-GGCAGGGCATCCCAGGACTCAGGCTCTCTTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47029763 358 +  51301725 TTTCCACTTACATCATCCCCTCCCTCTTCTATGTTCTGTTCTCTATATTCCCTGTGGGGAAGGGAGCGTCATAAACTTGCGTGGAAA-ATGGGACGTCAGTCATGGGGCTTGTTTCAGGGTGAAGTTAGGTAGAATTTAGGTAGAATTTCTCTAGA-GCCACGAGAGTGTCTCAGGACATTGGTTCCTTGTT--GACGCAGGTACCGACGCAG-AACGTGACCCCACACCAAGCTTCACCGCAAAGGAATGAGGTGGA-GCCTCACGATGGACCGAGGCTGCGTTGGCAGCGAAATTGGCTGGGATTGGCAGGTAGGAAACAGCCTCTGGAT-GGCAGGGCATCCCAGGACTCAGGCTCTCTTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742336 357 +  50890351 TTTCCACTTACCTCATCCCCTCCTTCTTCTATGTTCTGTTCTCTATATTCCCTGTGGAGAAGGGAGCGTCATAAACTTGCGTGGAAA-ATGGGACGTCAGTCATGGGGCTTGTTTCAGGGTGAAGTTAGGTAGAATTTAGGTAGAATTTCTCTAGA-GCCA--CGAGTGTCTCAGGACGTTGGTTCCTTGTT--GACACAGGTACCGAGGCAG-AACGTGACCCCACACCAAGCTTCACCGCAAAGGAATGAGGTGGAGGCCTCACGATGGACCGAGGCTGCGTTGGCAGCGAGATTGGCTGGGATTGGCAGGTAGGAAACAGCCTCTGGAT-GGCAGGGCATCCCAGGACTCAGGCTCTCTTTT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19476053 342 - 122678785 TCTATATAAATGTTAGACCCTACTTCTCCTGTGTTCTGTTCTATGCATTTCATTCTGGAATAGAAAGGTCAT-TTCATGAATGGAAATATGGGAAACTAGTCTTGGGGTATGTCAAGAGGTGATGT---------------TAGAATTTCTCTAGATGCCA---GAGTGTCTCAGGATATCTGGCCTTTCTTTAAACTCAGGAGTCAACTCAC-AACATGGACCC---TCAAACTTCACCAAGAAGGAAGGAGATGGTGGCCTGATGATGCACTGAGTCTGAGTTTGCAGTAATAATGGTGGGAATTTGTAGTAGGAAAGCATCCTCTGGGTGGTCAGGGGGTCGTAGGTCTCATGGTCCCTTtt
i canFam3.chr1              C 0 I 380
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I

a score=8022.000000
s hg38.chr19_GL949751v2_alt     34974 4 +   1002683 GAGA
s panTro4.chr19              58971784 4 +  63644993 GAGA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102602361 4 - 106955855 GAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59894082 4 +  64156825 GAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54911483 4 +  59248254 GAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47030121 4 +  51301725 GAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742693 4 +  50890351 GAGA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19476395 380 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I

a score=178310.000000
s hg38.chr19_GL949751v2_alt     34978 82 +   1002683 CCCTCCCCA-AATCCCGCTTTTAGATTCATGTCATCTCATCTCTGCTATCCACCCATCGTCTGTTCAAACAGTGATTCCTATA
s panTro4.chr19              58971788 82 +  63644993 CCCTCCCCA-AATCCCGCTTTTAGACTCATGTCATCTCATCTCTGCTATCCACCCATCATCTGTTCAAACAGTGATTCCTATA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102602365 82 - 106955855 CCCTCCCCA-AATCCCGCTTTTAGACTTATATCATCTCATCTCTGCTATCCACCCATCGTCTGTTCAAACAGTGATTCCTATA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59894086 82 +  64156825 CCCTCCCCA-AATCCCTCTTTTAGACTCATGTCATCTCATCTCTGCTATCCATCCATCGTCTGTTCAAACAGTGATTCCTATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54911487 82 +  59248254 CCCTCCCCA-AATCCCGCTTTTAGActcatgtcatctcatctctgctatccatccatcGTCTGTTCAAACAGTGATTCCTATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47030125 82 +  51301725 CCCTCCCCA-AATCCCGCTTTGAGACTCATGTCATCTCATCTCTgctatccatccatcatctgtTCAAACAGTGATtcctata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742697 82 +  50890351 CCCTCCCCA-AATCCCGCTTTTAGActcatgtcatctcatctctgctatccatccatcGTCTGTTCAAACAGTGATTCCTATA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19476775 79 - 122678785 CTTTCCTCACAAACCTGCTTTTAGACTCATGTTGCCTCAGCTCTGGTATTAGCCAATATTCTGC----ACAGTGATTCCCTTA
i canFam3.chr1              I 380 I 3401
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I

a score=274299.000000
s hg38.chr19_GL949751v2_alt     35060 153 +   1002683 ttcttttttctttttgagacagggtctcactctgtggcccaggctggagtgccagggtgcagtcacagctcactgcagcctcaacctcctgggctcaagtgatccatccatctcagcctcccaaataactgggactacaggcatgcaccacca
s panTro4.chr19              58971870 152 +  63644993 ttcttttt-ctttttgagacagtgtctcactctgtggcccaggctggagtgccagggtgcagtcatagctcactgcagcctcaacctcctgggctcaagtgatccgcccatctcagcctcccaaataactgggactacagacatgcaccacca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102602447 152 - 106955855 ttcttttt-ctttttgagtcagggtctcactctgtggcccaggctggagtgccgggctgcggtcacagctcactgcagcctcaacctcctcggctcaagtgatctgcccgtgtcagcctcccaaataactgggactacaggcacgcaccacca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59894168 152 +  64156825 ttcttttt-ctttttgagataggatctcactctgtggcccaggctggagtgctggagtgcagtcacagctcgctgcagcctcgacctcctgggctcaagtgatctgcctgtctcagcctcccaaataactgggactacaggcatgtgccacca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54911569 152 +  59248254 ttcttttt-ctttttgagataggatctcactctgtggcccaggctggagtgctggagtgcagtcacagctcgctgcagcctcgacctcctgggctcaagtgatctgcctgtctcagcctcccaaataactgggactacaggcatgtgccacca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47030207 152 +  51301725 ttcttttt-ctttttgagataggatctcactctgtggcccaggctggagtgctggagtgcagtcacagctcgctgcagcctcgacctcctgggctcaagtgatctgcctgtctcagcctcccaaataactgggactacaggcatgtgccacca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46742779 152 +  50890351 ttcttttt-ctttttaagataggatctcactctgtggcccaggctggagtgctggagtgcagtcacagctcgctgcagcctcgacctcctgggctcaagtgatctgcctgtctcagcctcccaaataactgggactacaggcatgtgccacca
i chlSab2.chr6              C 0 I 21
e canFam3.chr1               19476854 3401 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I

a score=17655.000000
s hg38.chr19_GL949751v2_alt     35213 17 +   1002683 cgct-ggctgattttaaa
s panTro4.chr19              58972022 18 +  63644993 cgcccggctgatttttaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102602599 18 - 106955855 cgcccggctgatttttaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59894320 18 +  64156825 ggcccggctaatttttaa
i rheMac3.chr19             C 0 I 7
s macFas5.chr19              54911721 18 +  59248254 ggcccggctaatttttaa
i macFas5.chr19             C 0 I 11
s papAnu2.chr19              47030359 18 +  51301725 ggcctggctaatttttaa
i papAnu2.chr19             C 0 I 14
e canFam3.chr1               19476854 3401 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I
e chlSab2.chr6               46742931 21 +  50890351 I

a score=720109.000000
s hg38.chr19_GL949751v2_alt     35230 468 +   1002683 atttttttgtagagatgaggactcacgatg------------------ttgcccaggctggtctcgaacacctgagttcaagtgattctcccaccttggcctcccaacatgctgggattacaggtgtgagctacctgcacccagccCAATTCCCATATTCtttttcttttctttttttttttt-tttttttgacatggagtctccctctgtcacccaggctggagggcagcggtgctatcttagctcactgcaacctctgcctcccaggttcaa-gcgattttcctgcctcagcctcccgagtagctgggattacaggtccttgccaccatgcccagctaa-tttttgtatttttagtagagacggggtttcaccatgttggccagtctggtctcaaactcctgacctcaagagatctgcccgcctgggcctcccaaagtcctgagattacaggcgtgagccaccacacctggctgatttgtgtttctt
s panTro4.chr19              58972040 455 +  63644993 atttttttgtagagatgaggactcagtatg------------------ttgcccaggctggtctcgaacacctgagttcaagcgattctcccaccttggcctcccaacatgctgggattacagatgtgagctacctgcacccagccCAATTCCCACAttctttttctttt--------------tttttttgacatggagtctccctctgtcacccaggctggagggcagtggtgctatcttagctcactgcaacctctgcctcccaggttcaa-gcgattttcctgcctcagcctcccgagtagctgggattacaggtccttgccaccatgcccagctaa-tttttgtatttttattagagacggggtttcaccatgttggccagtctggtctcaaactcttgacctcaagagatctgcccacctgggcctcccaaagtcctgagattacaggcgtgagccaccacacctggctgatttgtgtttctt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102602617 460 - 106955855 atttttttgtagaggtgaggactcactatg------------------ttgcccaggctggtctcgaacacctgagttcaagcgattcttccaccttggcctcccagcgtgctgggattacaggtgtgagctacctgcacccagccCAATCCCCATAttctttttctttc--------ttttc-tttttttgatacggagtctccctctgttactcaggctggagtgcagtggtgctatctcagctcactgcaacctctgcctcccaggttcaa-gcgattttcctgcctcagcctcccgagtagctgggattacaggtgctcgcaatcatgcccagctaa-tttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagagatctgcccacctgggcctctcgaagtcctgagattacaggcatgagccaccacacccggctgatttgtgtttctt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59894345 446 +  64156825 ttttttaagtagagatgggatttcaccatgnnnnnnnnnnnnnnnnnn------------------------tgagctcaagcgattctcccacctcggcctcccaacatgctgggattacaggcatgagctacctgcaaccagccCAATTCCCATAttctttttc------------------tttttttgacatggaatctccctctgtcacccatgctggagtgctgtggtgttctctcagctcactgtaacctctgcctctcaggttcca-gcgattttcctgcctcagcctcccgagtagctgggattacaggcacctgccaccatgcccagctgattttttgtatttttagtagagatggggtttcgccatgttggccaggctgatctcaaactcctgacctcgagagatctgcccacctgggcctcccaaagtcctgagattacaagtgtgagccaccacacccagctgatttgcgtttctt
i rheMac3.chr19             I 7 C 0
s macFas5.chr19              54911750 452 +  59248254 ttttttttgtagagatgaggactcactgtg------------------ttgcccaggctggtctggaacacctgagctcaagcgattctcccacctcggcctcccaacatgctgggattacaggcatgagctacctgcaaccagccCAATTCCCATAttctttttc------------------tttttttgacatggaatctccctctgtcacccatgctggagtgctgtggtgttctctcagctcactgtaacctctgcctctcaggttcca-gcgattttcctgcctcagcctcccgagtagctgggattacaggcacctgccaccatgcccagctgattttttgtatttttagtagagatggggtttcgccatgttggccaggctgatctcaaactcctgacctcgagagatctgcccacctgggcctcccaaagtcctgagattacaagtgtgagccaccacacccagcTGATTTGCGTTTCTT
i macFas5.chr19             I 11 C 0
s papAnu2.chr19              47030391 467 +  51301725 ttttttttgtagagatgaggactcactgtg------------------ttgctcaggctggtctggaacacctgagctcaagcgattctcccacctcggcctcccaacatgctgggattacaggcatgagctacctgcAACCAGCCCAATTcccatattctttttctttttttttttttttttttttttttgagacggagtctcgctctgtca-ccaggctggagtgcaatggccggatcttcgctcactgcaagctccgcctcccgggttttacgccattct-ctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctc--gtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcccctttttctttttt
i papAnu2.chr19             I 14 I 824
s chlSab2.chr6               46742952 451 +  50890351 ttttttttgtagagatgaggactcaccgtg------------------ttgcccaggctggtctggaacacctgagctcaagcgattctcccacctcggccttccaacatgctgggattacaggcatgagctacctgcaaccagccCAATTCCCATAttctttttc------------------tttttttgacatggaatctccctctgtcacccatgctggagtgctgtggtgttctctcagctcactgtaacctctgcctctcaggttcca-gcgattttcctgcctcagcctcccgagtagctgggattacaggcacctgccaccatgcccagctgattttttgtatttttagtagagatggggtttcgccacg-tggccaggctgatctcaaactcctgacctcgagagatcttcccacctgggcctcccaaagtcctgagattacaggtgtgagccaccacacccagcTGATTTGCGTTTCTT
i chlSab2.chr6              I 21 C 0
e canFam3.chr1               19476854 3401 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I

a score=104483.000000
s hg38.chr19_GL949751v2_alt     35698 83 +   1002683 gaaaagagaagttcaagttgtaactcccaggacctgcgaatgtgaccttatttgaaaatagcattgtctgatctttgcagatg
s panTro4.chr19              58972495 83 +  63644993 gaaaagagaagttcaagttgtgactcccaggacctgcgaatgtgaccttatttgaaaatagcattatctgatctttgcagatg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102603077 82 - 106955855 gaaaagagaagttcaagttgtaactcccaggacctgcgaatgtgacctcatttgaaaataa-attatctgatctttgcagatg
i nomLeu3.chr10             C 0 M 2026
s rheMac3.chr19              59894791 83 +  64156825 gaaaagagaagctcaagttgtaactcccaggacctctgaatgtgaccttatttggaaataccattatctgatctttgcagatg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54912202 83 +  59248254 GAAAAGAGAAGCTCaagttgtaactcccaggacctctgaatgtgaccttatttggaaataccattatctgatctttgcagatg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46743403 83 +  50890351 GAAAAGAGAAGCTCACGTTGtaactcccaggacctctgaatgtgaccttatttggaaataccattatctgatctttgcagatg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19476854 3401 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I
e papAnu2.chr19              47030858 824 +  51301725 I

a score=135032.000000
s hg38.chr19_GL949751v2_alt     35781 170 +   1002683 taattaattaaactaagatgaggtcatactagagtaggctgggtatctaatccaatataacttacaagaagagaaaaagagagacagagacacacagaaggaagacggccatgcgaagacagaggcagagaggccaggctgcaatcatagtgctttgggatgccaagata
s panTro4.chr19              58972578 164 +  63644993 taattaattaaactaagatgcggtcataccggagtaggctgggtatctaatccaatataacttacaagaagagaaaaagagagaca------cgcagaaggaagacggccatgcgaagacagaggcagagaGGCCAGGctgcaatcgtagtgctttgggatgccaagata
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59894874 168 +  64156825 taattagttaagctaagatgaggtcatactggagtaggcggggcatctagtccaatataacttacgagaagagaaagagagagaga--gacacgcagaaagaaggtggccatgcaaagacagaggcagagaGGCCAAGctgcaatcacagtgctttgggaggccgagata
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54912285 166 +  59248254 taattagttaagctaagatgaggtcatactggagtaggcggggcatctagtccaatataacttacgagaagagaaagagagagaga--gaca--cagaaagaaggtggccatgcaaagacagaggcagagaGGCCAAGctgcaatcacagtgctttgggaggccgagata
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46743486 168 +  50890351 taattagttaagctaagatgaggtcatactggagtaggcggggcatctagtccaatataacttatgagaagagaaaaagagagaga--gacacacagaaagaaggtggccatgcaaagacagaggcagagaGGCCAGGctgcaatcacagtgctttgggaggccgagata
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19476854 3401 - 122678785 I
e ponAbe2.chr19              55837902 1515 +  60714840 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102603159 2026 - 106955855 M
e papAnu2.chr19              47030858 824 +  51301725 I

a score=29359.000000
s hg38.chr19_GL949751v2_alt     35951 16 +   1002683 ggagaattgcttgagc
s panTro4.chr19              58972742 16 +  63644993 ggagaattgcttgagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55839417 16 +  60714840 ggaggattgcttgagc
i ponAbe2.chr19             I 1515 C 0
s rheMac3.chr19              59895042 16 +  64156825 ggagaattgcttgagc
i rheMac3.chr19             C 0 I 282
s macFas5.chr19              54912451 16 +  59248254 ggagaattgcttgagc
i macFas5.chr19             C 0 I 281
s papAnu2.chr19              47031682 16 +  51301725 ggaggattgctcgagt
i papAnu2.chr19             I 824 C 0
s chlSab2.chr6               46743654 16 +  50890351 ggagaattgcttgagc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19476854 3401 - 122678785 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102603159 2026 - 106955855 M

a score=231838.000000
s hg38.chr19_GL949751v2_alt     35967 140 +   1002683 ccaggagttggagactagcctgggcaatatagcaagatcccatctct-----------aaaacagaaattattttaattagtccaacatggtg--gtgtgcacctgtagtcctagctgctcagaaggct-gcggggagg--------------actgcttgagctcag
s panTro4.chr19              58972758 154 +  63644993 ccaggagttggagactagcctgggcaatatagcaagaccccatctct-----------aaaagagaaattattttaattagtccaacatggtg--gcgtgcacctgtagccctagctgctcagaaggct-gcggggggggggcgggggggggtactgcttgagctcag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55839433 142 +  60714840 ccaggagttggagactagcctaggcaatatagcaagaccccatctct-----------aaaacagaaattattttaattagaccaacatggtggtgtgtgcacctgtagttctagctgctcagaaggct-gcggggagg--------------attgtttgagctcag
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59895340 140 +  64156825 ccaggaattggagactagcctgggcaatctagcaagaccccatctct-----------aaaacagaaattactttaattagtccaacatggtg--gtgtgcacctgtagttctagcagctcagaaggct-gtggggagg--------------attgcttgagctcag
i rheMac3.chr19             I 282 C 0
s macFas5.chr19              54912748 140 +  59248254 ccaggaattggagactagcctgggcaatctagcaagaccccatctct-----------aaaacagaaattactttaattagtccaacatggtg--gtgtgcacctgtagttctagcagctcagaaggct-gtggggagg--------------attgcttgagctcag
i macFas5.chr19             I 281 C 0
s papAnu2.chr19              47031698 140 +  51301725 ccaggaattggagactagcctgggcaatctagcaagactccatctct-----------aaaacagaAATTACTTTAATTAGTCcaacatggtg--gtgtgcacctgtagttctagcggCTCAGAAGGCt-gcggggagg--------------attgcttgagctcag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46743670 152 +  50890351 tcacgacttggagactagccttggcaatatagaaagaccccatcgctgcaaaaaaaaaaaaaaaaaaattattttaattagcccaatgtggtg--gtgtgcacctgtagttgtagctgctcagaaggctaatggggagg--------------attgcttgagcccag
i chlSab2.chr6              C 0 I 2373
e canFam3.chr1               19476854 3401 - 122678785 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102603159 2026 - 106955855 M

a score=503600.000000
s hg38.chr19_GL949751v2_alt     36107 421 +   1002683 gaggttgaggctgcagtgagctatggtggtaccactgcactccggcctgggcaactgagtgagaccctgtctaaagaa-------aa-gaaaaaaaaaaacagagccaacgattggagtgatgcatctacaagttaaagaatgccgggagcgc--------tggctcacgcctgtaatctcaacagtttgggaggctgag----gcgggcagatcacctgaggtcaggagttcgaggccagcctggccaacgtggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggtccatgcttgtaatcccagctacttgggaggctaaggcaggagaattgattgaacccaggaggtggaggttgcagtgaga-aagatcatgccactgcactctagcctgggtgacagagcaagactccgcctc----aagaaaa
s panTro4.chr19              58972912 420 +  63644993 gaggttgaggctgcagtgagctatggtagtaccactgcactccggcccgggcaactgagtgagaccctgtctaaagaa-------aa---aaagaaaaaaCAGagccaacgattggagtgatgcatctacaagttaaagaatgccgggagcgc--------tggctcacgcctgtaatctcaacagtttgggaggctgag----gcgggcagatcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaatcctgtctctactaaaaatacaaaaattagccaggcatggtggcccatgcttgtaatcccagctacttgggaggctaaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagccaagatcatgccactgcactctagcctgggtgacagagcaagactccgcctc----aagaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55839575 423 +  60714840 gaggttgaggctgcagtgagctatggtggtaccactgcactccggcctgggcaactgagtgagaccctgtctaaagaa-------aaaaaaaaaaaaaaaCACagccaacgattggagtgatgcatctacaagttaaagaatgccaggagcgc--------tggctcacgcctgtaatcccagcactttgggaggctgag----gcgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcccatgcttgtaatcccagctacttgggaggctaagacaggagaattgcttgaacccaggaggtggaggttgcagtgaaccaagatcatgccactgcactctagcctgggtgacagagcaagactctgcctc----aaaaaaa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59895480 436 +  64156825 gaggttgaggctgtagtgagctatggtggtaccactgcactccagcctg-gtgactgagtgagaccctgtctaaaaag----aaaaaaaaaaaaaaaaaaGACagccagcaatttgagtgatgcatctacaagttaaagaatgccaagagggcaggcacggtggctcaagcctgtaatctcaacactttgggaggctggggggagggggtggatcacctgaggtcaggagtttgagaccagcctggccaaaagggtgaaaccccgtctctactaaaaatacagaaattagccaggcgtggtggcccatgcctgtaatccaggctactcgggaggctaaggcaggagtattgcttgaacctgggaggtggcggttgcagtgagccgagatcatgccactgcactctagcctgggtgacagacagagactctgcctc-----aaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54912888 441 +  59248254 gaggttgaggctgtagtgagctatggtggtaccactgcactccagcctg-gtgactgagtgagaccctgtctaaaaagaaaaaaaaaaaaaaaaaaaaaagacagccagcaatttgagtgatgcatctacaagttaaagaatgccaagagggcaggcacggtggctcaagcctgtaatctcaacactttgggaggctggggggagggggtggatcacctgaggttgggagttcgagaccagcctggccaacagggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggcccatgcctgtaatccaggctactcgggaggctaaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatcatgccactgcactctagcctgggtgacagacagagactctgcctc----aaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47031838 435 +  51301725 gaggttgaggctgcagtgagctatggtggtaccactgcactccagcctgcgtgactgagtgagaccctgtcttaaaaa-----------aaaaaaaaagacagagccAGCAATTTGAGTGATGGATCTACAAGTTAAAGAATGCCAagagggcaggcatggtggctcaagcctgtaatctcaacactttaggaggctgcggggagggggtggatcacctgaggtcaggagttcgagaccagcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaattagctaggcgaggtggcccatgcctgtaatccaggctactcgggaggctaaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcatgccactgcactctagcctgggtgacagacagagactctgcctcaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19476854 3401 - 122678785 I
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102603159 2026 - 106955855 M
e chlSab2.chr6               46743822 2373 +  50890351 I

a score=387013.000000
s hg38.chr19_GL949751v2_alt     36528 273 +   1002683 aaaaaaa--------atgccaagaattgtcagccatcactaga----agaggggcataaaacagacgctc--------cttcatagttctcagaaggaatcaacattgcaaacaccttggtttcagacttctcatctccccaacttaaagca-----attctaattcctttaagccaccaggcttgtagtactttggtatggcagccATTGG-------------GGGATGAGGTCAGTCTCCTGGTTGCCCAGCTTACTGTGCTCAGCAGCTGGAGGCTTGGGTAT----------GAACCCGATAGTCATCTCTAAGGC
s panTro4.chr19              58973332 272 +  63644993 aaaaaaa---------tgccaagaattgtcagccatcactaga----agaggggcataaaacagacgctc--------cttcatagtcctcagaaggaatcaacattgcaaaccccttggtttcagacttctcatctccccaacttaaagca-----attctaattgctttaagccaccaggcttgtagtactttggtatggcagccATTGG-------------GGGATGAGGTCAGTCTCCTGGTTGCCCAGCTTACTGTGCTCAGCAGCTGGAGGCTTGGGTAT----------GAGCCCGATAGTCATCTCTAAGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55839998 280 +  60714840 aaaaaaaaaaaaaaaatgccaagaattgtcagccatcactaga----agaggggcataaaacagattct---------cttcatagccctcagaaggaatcaacattgccaacatcttggtttcagacttttcatctccccaacttaaagca-----attttaattgctttaagccactaggcttgtagtactttggtatggcagccATTGG-------------GGGATGAGGTCAGTCTCCTGGTTGCCCAGCTTACAGTGCTCAGCAGCTGGAGGCTTGGGTAT----------GAGCCTGATGGTCATCTCTAAGGC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59895916 284 +  64156825 aaaaaaa-aaacagaatgctaagaattgtcagccaccactaga----agaggggcataaaacagattctc--------cctcatagccctcagaaggaatcaacattgccaacactttggtttcagacttctcatctccccaactgcgagagagtgca-tttagttgctttaagccatcaggcttgtagtactttggtatggcagccACTGG-------------GGGATGAGGTCAGCCTCCTGGTTGCCCAGCTTACTGTGCTCAGCAGCTGGAGGTTTGGGTGT----------GAGCCCGATGGTCATCTCTAAGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54913329 285 +  59248254 aaaaaaa-aaacagaatgctaagaattgtcagccaccactaga----agaggggcataaaacagattctc--------cctcatagccctcagaaggaatcaacattgccaacactttggtttcagacttctcatctccccaactgcgagagagtgcattttagttgctttaagccatcaggcttgtagtactttggtatggcagccACTGG-------------GGGATGAGGTCAGCCTCCTGGTTGCCCAGCTTACTGTGCTCAGCAGCTGGAGGTTTGGGTAT----------GAGCCCGATGGTCATCTCTAAGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47032273 285 +  51301725 aaaaaaa-aaaaagaatgccaagaATTGTCAGCCACCACTAGA----AGAGGGGCAtaaaacagattctc--------cctcataGCCCTCAGAAGGAATCAACATTGCCAACACTTTAGTTTCAGACTTCTCATCTCCCCAACTGCGAGAGAGTGCATTTTAGTTGCTTTAAGCCATCAGGCTTGTAGTACTTTGGTATGGCAGCCACTGG-------------GGGATTAGGTCAGCTTCCTGGTTGCCCAGCTTACTGTGCTCAGCAGCTGGAGGTTTGGGTAT----------GAGCCTGATGGTCATCTCTAAGGC
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19480255 313 - 122678785 --------aaacaaggaacccagccctgccagctgtccccagaagcgaggggagcttggaatgaattctcccttggagcctcagagcattcaagaggaatttactcagctagcaccttgatcttggatctctggcctccagaactgtgggagagtagatttatgttgtgttaagccacttggtttgtggcactttgtcacagcagccctggaaatgaatacGGGCAGAGTGAGGTCAGTCTCTCGACTGCCCAGCTTATTCTGCTCTGTAGCTGGAGAGCTGGAGGTTTGGTGCATAGTGACTGACAGCCACCCCTAAAGC
i canFam3.chr1              I 3401 C 0
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102603159 2026 - 106955855 M
e chlSab2.chr6               46743822 2373 +  50890351 I

a score=36527.000000
s hg38.chr19_GL949751v2_alt     36801 28 +   1002683 ACAAATAgccgggtgcagtggctcacac
s panTro4.chr19              58973604 28 +  63644993 ACAAATAgccgggtgcagtggatcacac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55840278 28 +  60714840 ACAAATagctgggtgcagtggctcacgc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59896200 28 +  64156825 ACAAATAgccgggtgtagtggctcacgc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54913614 28 +  59248254 ACAAATAgccgggtgtagtggctcacgc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47032558 28 +  51301725 ACAaatagccgggtgtagtggctcacgc
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19480568  0 - 122678785 C
e calJac3.chr22              45321763 1387 +  49145316 I
e nomLeu3.chr10             102603159 2026 - 106955855 M
e chlSab2.chr6               46743822 2373 +  50890351 I

a score=252151.000000
s hg38.chr19_GL949751v2_alt     36829 166 +   1002683 ctgtaatcccagcactttaggaggttgaagtgggtagatcacctgagttcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaacacaa--aaaattagccaggcgtggtggcgtgtgcctataatcccagcttctcgggaggcggagg
s panTro4.chr19              58973632 166 +  63644993 ctgtaatcccagcactttaggaggttgaagtgggtagatcacctgagttcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaa--aaaattagccaggcgtggtggcgtgtgcctgtaatcccagcttctcgggaggcggagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55840306 166 +  60714840 ctgtaatcccagcactttaggaggttgaagtgggtagatcacccgagttcaggagtttgagaccagcctggccaacatggtgaaaccccatctttactaaaaatacaa--aaaattagccaggcgtggtggtgcgtgcctgtaatcccagcttctcaggaggctgagg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59896228 166 +  64156825 ctgtaatctcaacactttaggaggttgaagtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa--aaaattagccaggcatggtggtgcgcacctgtaatcccagcttctcgggaggctgagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54913642 166 +  59248254 ctgtaatcccaacactttaggaggttgaagtgggtggatcacctgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaa--aaaattagccaggcgtggtggtgcgcacctgtaatcccagcttctcgggaggctgagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47032586 166 +  51301725 ctgtaatcccaacactttaggaggttgaagtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa--aaaattagccaggcatggtggtgcgcacctgtaatcccagcttcttgggaggctgagg
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45323150 166 +  49145316 CTGCGATCACTGGGTtttgggaggctgagacagaagaactgtttgagcccatgagtcagagactagcctgggcaatacagcaagaccccatctctaaaaaagaaattattttaattagcccagcatggtggtgtgcac--gtagttctagctgcccagaaggtttggg
i calJac3.chr22             I 1387 C 0
e canFam3.chr1               19480568   0 - 122678785 C
e nomLeu3.chr10             102603159 2026 - 106955855 M
e chlSab2.chr6               46743822 2373 +  50890351 I

a score=213147.000000
s hg38.chr19_GL949751v2_alt     36995  95 +   1002683 caggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagatcacaccactgcactccagcctgggagacaaagcaagactctgtc------------aa
s panTro4.chr19              58973798  95 +  63644993 caggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacaccactgcactccagcctgggagacaaagcaagactctgtc------------aa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55840472  95 +  60714840 caggagaatcgcttcaacccaggaggtggaggttgcagtgagctgagatcacaccactgcactccagcctgggagacaaagcaagactctgtc------------aa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102605185  95 - 106955855 caggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacaccactgcactccagcctgggagacaaagcaagactctgtc------------aa
i nomLeu3.chr10             M 2026 C 0
s rheMac3.chr19              59896394 107 +  64156825 tgggagaatcgcttgaacccaggaggtggcggttgcagtgagccgagatcacaccattgcactccagcctgggagacaaagcaagactctgtctcaaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54913808 107 +  59248254 tgggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacaccattgcactccagcctgggagacaaagcaagactctgtctcaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47032752 107 +  51301725 tgggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacaccattgcactccagcctgggagacaaagcaagactctgtctcaaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45323316  93 +  49145316 --ggaggattgcttgagcccaggaggttgaggctgcagtgagctatggtggtaccactgcactccagcctgggtgacagagtgagacccggtctc------------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19480568   0 - 122678785 C
e chlSab2.chr6               46743822 2373 +  50890351 I

a score=54563.000000
s hg38.chr19_GL949751v2_alt     37090 27 +   1002683 aaa-------aaaaaaaaa-------------aTGCTCATCTAAGGT
s panTro4.chr19              58973893 26 +  63644993 aaa-------aaaaaaaaa--------------TGCTCATCTAAGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55840567 40 +  60714840 aaa-------aaaaaaaaaaaaaaaaaaaaaaaaGCTCATCTAAGGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102605280 40 - 106955855 aaa-------aaaaaaaaaaaaaaaaaaaaaaaaGCTCATCTAAGGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59896501 27 +  64156825 aag-------caaaaaaaa-------------aaGCTCATCTAAGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54913915 34 +  59248254 aaaaaaaagcaaaaaaaaa-------------aAGCTCATCTAAGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47032859 30 +  51301725 aagcaa----aaaaaaaaa-------------aagctcatctaAGGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46746195 27 +  50890351 AAA-------AAAAAAAAA-------------CGGCTCATCTAAGGT
i chlSab2.chr6              I 2373 C 0
s calJac3.chr22              45323409 26 +  49145316 aaa-------aaaaaaaaa-------------aaGCTAATCTAA-GT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19480568  0 - 122678785 C

a score=803292.000000
s hg38.chr19_GL949751v2_alt     37117 264 +   1002683 GCAAATGTGTGTAGGAGACGAGCATTACCCCACAAGGAAGGGCTGCACCCAGAAAAGGAGGAAGGAACTGAAGCAGACGAAGCACGTCGATGTC----------CACCGCACCCC-CCGTGCACCAGGgaggaactggggccttagggaggtggagctctgctgggtca-agcctagagtttctatgtagtaaagccgagattataa-cccaggtcatccgtttcacagtgtgagctctgtctgAATACATCAGGTTCAATTGGAGGATGGTTAAAA
s panTro4.chr19              58973919 264 +  63644993 GCAAATGTGTATAGGAGACGAGCATTACCCCACAAGGAAGGGCTGCACCCAGAAAAGGAGGAAGGAACTGAAGCAGATGAAGCACGTCGATGTC----------CACCGCACCCC-CCGTGCACCAGGgaggaactggggccttagggaggtggagctctgctgggtca-agcctagagtttctatgtagtgaagccgagattataa-cccaggtcatccgtttcacagtgtgagctctgtctgaatacatcaggttCAATTGGAGGATGGTTAAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55840607 245 +  60714840 GCAAATGTGTGTAGGAGATGAGCATTACCCCACAAGGAAGGGCTGCACCCAGAAAAGGAGGAAGGAACTGAGGCAGATGAAGCATGTCAATGTC----------CACCACCCGCC-CCGTGCAcc-------------------agggaggtggagctctgctgggtca-agcctagagctcctatgtagtgaagctgagattataa-cccaggtcttccttttcacagtgtgagctctgtctgaatacatcaggttCAATTGGAGGATGGTTAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102605320 263 - 106955855 GCAAATGTG-GTAGGAGACGAGCATTACCCCAAAAGGAAGGGCTGCACCCAGAAAAGGAGGAAGGAACTGAGGCAGATGAAGCTTGTCGATGTC----------CACCACACCCC-CTGTGCACCAGGgaggaactgaggccttaggcaggtggagctctgctgggtca-agcctagagcttctatgtagtgaagctgagattataa-cccaggtcttccttttcacagtgtgagctctgtctgaatacatcaggttCAATTGGAGGATCGTTAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59896528 263 +  64156825 GCAAATGTGTGTGCGAGAGGAGCATTACCCCACAGGGAAGGGCTGCACCCAGAAAAGGGGGAAGGAACTGAGGCAAATGAAGCACATTGATGAC----------CACCACACCcc-ccatgcacca-ggaggaactggggccttagggaggtggagctctgctgggtca-agcctagagctcctaggtagtgaagcccacactgtaa-cccaggtcttccttttcacagtctgagctctgtctgaatacatcaGGTTCAATTTGAGGATGGTTGAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54913949 263 +  59248254 GCAAATGTGTGTGCGAGAGGAGCATTACCCCACAGGGAAGGGCTGCACCCAGAAAAGGGGGAAGGAACTGAGGCAAATGAAGCACATTGATGAC----------CACCACACCcc-ccatgcacca-ggaggaactggggccttagggaggtggagctctgctgggtca-agcctagagctcctaggtagtgaagcccacactgtaa-cccaggtcttccttttcacagtctgagctctgtctgaatacatcaGGTTCAATTTGAGGATGGTTGAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47032889 264 +  51301725 GCAAATGTGTGTGCGAGAGGAGCATTACCCCACAGGGAAGGGCTGCACCCAGAAAAGGGGGAAGGAACTGAGGCAAATGAAGCGCATTGATGAC----------CACCACACCCC-CCATGCACCAGGGAGGAACTGGGGCCTTAGGGAGGTGGAGCTCTGCTGGGTCA-AGCCTAGAGTTCCTAGGTAGTGAAGCCCACATTGTAA-CCCAGGTCTTCCTTTTCACAGTGTGAGCTCTGTCTGAATACATCAGGTTCAATTTGAGGATGGTTAAAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46746222 263 +  50890351 GCAAATGGGTGTGCAAGAGGGGCATTACCCCACAGGGAAGGGCTGCACCCAGAAAAGGGGGAAGGAACTGAGGCAAATGAAGCGCATTGATGTC----------CACCACACCcc-ccatgcaccagggaggaactggggccttagggaggtgcagctctgctgggtca-ggcctagagctcctaggtagtgaagcccacactgtaa-cccaggtcttccttttcacagtctgagctctgtctgaatacatcaGGTTCAATTTGAGGATGG-TAAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45323435 250 +  49145316 GCAAATGTGTGTAGGAGAGTAGCATTACCCTGCAGGGAAGGGCTGCACCCAGAAAAGG-GGAAGGAACTGAGGCAG-TGAAGCATGTTGATGTC----------TACCACACCCCTCCATGCATCC-------------GCcttagggaggtggaactctgctgggtca-agcctagagctcctatgtagtgaagccaagactataa-cccagatcttccttctgacagtctgagctctgtctgattacatcaGGTTCAATCTGAGGATGGTTTAAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19480568 269 - 122678785 TCAAATGTGTGTGTGGGAGGAGCATTACCCCA-AAAGAAGGGCTGTA-TTGCAGAAGGAGGAAGGAACTACGGCAAATGACAAGTCCTGATAGCCTTTACACAACCCCTCACCCC-CAACTCACGAAAGAAGAACCAGAGTCTT-GGTCAGTGGAG--CTGCTGGTTCGTAGTCTAGGGCTCCTATGAGATCAAGCCAAGGTCATAATCCCAGGTCTTCATTT--ACAGGCTGAGGTCCCTTTGATTGCATCATGTTCAAGTTAAGAACAGTTAAAA
i canFam3.chr1              C 0 I 176

a score=701660.000000
s hg38.chr19_GL949751v2_alt     37381 240 +   1002683 TCAGCCTAAGAATCGAGCTGGTCAGAAAATTGTCTTCTTGGggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggtcaggggctcgagaccagcctgaccaacatggtgaaaccccgtctctacttaaaatacaaaagtca-gccgggtgtggtggcctgcacctgtagtcccacctactcgggaggctgaggcaggagaatcgc
s panTro4.chr19              58974183 240 +  63644993 TCAGCCTAAGAATCGAGCTGGTCAGAAAATTGTCTTCTTGGggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggggctcgagaccagcctgaccaacatggtgaaaccccgtctctacctaaaatacaaaagtca-gccgggtgtggtggcctgcacccgtagtcccacctacttgggaggctgaggcaggagaatcgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55840852 240 +  60714840 TCAGCCTAAGAATCGAGCTGGTCACAAAATTGTCTTCTTGGggccaggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggggttcaagacaagcctgaccaacatggtgaaaccccgtctctgcttaaaatacaaaagtca-gctgggtgtggtggcctgcacgtgtagtcccagctacccgggaggctgaggcaggagaattgc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102605583 240 - 106955855 TCAGCGTAAGAATCGGGCTGGTCAGAAAATTGTCTTCTTGGggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggggcttgagaccagcctgaccaacatggtggaaccccgtctctacttcaaatacaaaagtta-gccgggtgtggtggcgtgcacctgtagtcccacctactcgggaggctgaggcaggagaatcac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59896791 240 +  64156825 TCAGCCTAAGAATCGGACTGGTCAGAAAATTGTTCTCTTGGggccaggcgtggtggcttatgcctgtaatcccagcacgttgggaggctgaagcaggcggatcacctgagttcaggggcttgagagcagcatgaccaacatggtgaaaccctgtctctacttaaaatagaaaagtta-gccgggtgtggtggcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcgc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54914212 240 +  59248254 TCAGCCTAAGAATCGGACTGGTCAGAAAATTGTTCTCTTGGggccaggcgtggtggcttatgcctgtaatcccagcacgttgggaggctgaagcaggcggatcacctgagttcaggggcttgagagcagcatgaccaacatggtgaaaccctgtctctacttaaaatagaaaagtta-gccgggtgtggtggcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcgc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47033153 240 +  51301725 TCAGCCTAAGAATCGGACTGGTCAGAAAATTGTCTtcttggggccaggcgtggtggtttatgcctgtaatcccagcactttgggaggctgaagcgggcggatcacctgagttcaggggCTTGAGagcagcatgaccaacatggtgaaaccctgtctctacttaaaatagaaaagtta-gccgggtgtggtggcatgcacctgtagtcccagctactcaggaggctgaggcaggaggatcgc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46746485 240 +  50890351 TCAGCCTAAGAATCGGACAGGTCAGAAAATTGTTCTCTTGGggccaggtgtggtggcttatgcctgtaatcccagcactttgggaggctgaagcgggcggatcacctgagttcaggggcttgagagcagcatgaccaacatggtgaaaccctgtctctacttaaaatagaaaagtta-gccgggtgtggtggcatgtacctgtagtcccagctactcaggaggctgaggcaggagaatcgc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45323685 241 +  49145316 TCAGCCTAAGTACAGAGCTGGTCAGAAAATTGTCCTCTTGGggccgggtgtggtggctcatgcctgtaatcccaccactttgggaggcagaggcaggcggatcacctgagatcaggggttcgagaccagcctgaccaacatggtgaaaccctgtctctacttaaaatacaaaaattaggccgggcacagtggctcacgcctgtaatcccaacactttgggatgccaagacaggcagatcac
i calJac3.chr22             C 0 I 366
e canFam3.chr1               19480837 176 - 122678785 I

a score=109663.000000
s hg38.chr19_GL949751v2_alt     37621 37 +   1002683 ttgaacctgggagacggaggttgcagtgagcccagat
s panTro4.chr19              58974423 37 +  63644993 ttgaacctgggagacggaggttgcagtgagcccagat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55841092 37 +  60714840 ttgaacccgggaggcggagattgcaatgagcccagat
i ponAbe2.chr19             C 0 I 257
s nomLeu3.chr10             102605823 37 - 106955855 ttgaacctgggaggcggaggttgcagtgagcccagat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59897031 37 +  64156825 ttgaacctgggaggtggaggttgcagtgagctgagat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54914452 37 +  59248254 ttgaacctgggaggtggaggttgcagtgagctgagat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47033393 37 +  51301725 ttgaacctgggaggtggaggttgcagtgagccgagat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46746725 37 +  50890351 ttgaacccgggaggtggaggttgcagtgagctgagat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45324292 37 +  49145316 ttgagcctgggaggcagaggttgcagtgagccaaggt
i calJac3.chr22             I 366 C 0
e canFam3.chr1               19480837 176 - 122678785 I

a score=88540.000000
s hg38.chr19_GL949751v2_alt     37658 37 +   1002683 cacgccattgcactccagcctgggctacagagtgaga
s panTro4.chr19              58974460 37 +  63644993 catgccattgcactccagcctgggctacagagtgaga
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102605860 37 - 106955855 cacgccattgcactccagcctgggctacagagtgaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59897068 37 +  64156825 cacgccattgcactccagcctgggccatagagtgaga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54914489 37 +  59248254 cacgccattgcactccagcctgggccatagagtgaga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47033430 37 +  51301725 cacaccattgcactccagcctgggccatagagtgaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46746762 37 +  50890351 cacaccattgcactccagcctgggccatagagtgaga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45324329 37 +  49145316 cacaccattgcactacagcctggatgacagagtgaga
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19480837 176 - 122678785 I
e ponAbe2.chr19              55841129 257 +  60714840 I

a score=47356.000000
s hg38.chr19_GL949751v2_alt     37695 19 +   1002683 ctctgtctcataaataaaT
s panTro4.chr19              58974497 19 +  63644993 ctctgtctcataaatacat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102605897 19 - 106955855 ctgtgtctcataaataaat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59897105 19 +  64156825 ctctgtctcataaataaat
i rheMac3.chr19             C 0 I 134
s macFas5.chr19              54914526 19 +  59248254 ctctgtctcataaataaat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47033467 19 +  51301725 ctctgtctcataaataaat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46746799 19 +  50890351 ctctgtctcataaataaat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45324366 19 +  49145316 gcctgtctcgaaaaaaaaa
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19481013 19 - 122678785 ctatctctcatgaataaat
i canFam3.chr1              I 176 C 0
e ponAbe2.chr19              55841129 257 +  60714840 I

a score=-7844.000000
s hg38.chr19_GL949751v2_alt     37714 16 +   1002683 -GCatacatacataaat
s panTro4.chr19              58974516 16 +  63644993 -acatacatacatacat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102605916  5 - 106955855 -aaata-----------
i nomLeu3.chr10             C 0 I 2
s macFas5.chr19              54914545 16 +  59248254 -aaaTACagagagagag
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47033486 16 +  51301725 -agagagagagagagag
i papAnu2.chr19             C 0 I 119
s chlSab2.chr6               46746818 16 +  50890351 -aaaTACagagagagag
i chlSab2.chr6              C 0 I 4
s calJac3.chr22              45324385  1 +  49145316 --------------g--
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19481032 16 - 122678785 aaaatcttaaaaaaaa-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55841129 257 +  60714840 I
e rheMac3.chr19              59897124 134 +  64156825 I

a score=-2337.000000
s hg38.chr19_GL949751v2_alt     37730 9 +   1002683 -------aaataaata
s panTro4.chr19              58974532 2 +  63644993 -------aa-------
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54914563 2 +  59248254 -------ag-------
i macFas5.chr19             I 2 C 0
s papAnu2.chr19              47033621 2 +  51301725 -------aa-------
i papAnu2.chr19             I 119 C 0
s chlSab2.chr6               46746838 2 +  50890351 -------ag-------
i chlSab2.chr6              I 4 C 0
s canFam3.chr1               19481048 9 - 122678785 aagaAAGAA-------
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55841129 257 +  60714840 I
e calJac3.chr22              45324386 0 +  49145316 C
e nomLeu3.chr10             102605921 2 - 106955855 I
e rheMac3.chr19              59897124 134 +  64156825 I

a score=12570.000000
s hg38.chr19_GL949751v2_alt     37739 12 +   1002683 ----------aGAGAGAGAGAG
s panTro4.chr19              58974534  7 +  63644993 ---------------gagagag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55841386 12 +  60714840 ----------agagagagagag
i ponAbe2.chr19             I 257 C 0
s nomLeu3.chr10             102605923 12 - 106955855 ----------AGAGAGACAGAG
i nomLeu3.chr10             I 2 C 0
s macFas5.chr19              54914565 12 +  59248254 ----------agagggagagag
i macFas5.chr19             C 0 I 35
s papAnu2.chr19              47033623 12 +  51301725 ----------agaaggaaagaa
i papAnu2.chr19             C 0 I 7
s chlSab2.chr6               46746840 12 +  50890351 ----------agagagagggaa
i chlSab2.chr6              C 0 I 27
s calJac3.chr22              45324386 12 +  49145316 ----------agagagaaagag
i calJac3.chr22             C 0 I 1
s canFam3.chr1               19481057 20 - 122678785 AAAACCAATCTGAGGATAAG--
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              59897124 134 +  64156825 I

a score=561156.000000
s hg38.chr19_GL949751v2_alt     37751 211 +   1002683 ------AAGAAAATTGTCTTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCCTAA-------GCCCAGCCCTCCTCTATTCCGACGGAGGATG-ATGGCAGTACTGCGGTATTTAGCGGCTGCAGACTCGGAGACCCCACAGCAGCTCTGCCTTTCCCAGCGGAGTCTG----------TCCCCGTGTCTCTGCAGCGCGGCCTCCTCCTCGCTTGCATGTGGGCGGCAGAACTCA---------
s panTro4.chr19              58974541 211 +  63644993 ------aagaaaaTTGTCTTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCCTAA-------GCCCAGCCCTCCTCTATTCCGACGGAGGAGG-ATGGCAGTACTGCAGTATTTAGAGGCTGCAGACTCGGAGACCCCACCGCAGCTCTGCATTTCCCAGCGGAGTCTG----------TCCCCGTGTCTCTGCAGCGTGGCCTCCTCGTCGCTTGCATGCGGGCGGCAGAACTCA---------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55841398 210 +  60714840 ------aAATAAAATGTCTTTTTGCTCA--------------------------CAGCCTTG----------CACCCTGTAAATTCTTAA-------GCCCAG-CCTTCTCTATTCCGACGGAGGATG-ATGGCAGTACTGCGGTATTTAGTGGATACAGACTCAGAGACCCCACCGCAGCTCTGCATTTCCCAGCGGAGTCTG----------TCCCTGTGTCTCTGCAGCGCGGCCTCCTTGTCACTTGCATGTGGGCAGCAGAACTCA---------
i ponAbe2.chr19             C 0 I 6
s nomLeu3.chr10             102605935 210 - 106955855 ------AAGAAAATTGTCCTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCTTAA-------GCCCAGTCCTCCT-TATTCCGACGGAGGATG-ATGGCAATACTGCGGTATTTAGTGCATACAGACTCGGAGACCCCACCGCAGCTCTGCATTTCCCAGCGGAGTCTG----------TCCCCGTGTCTCTGCAGCGCGGCCTCCTCGTGGCTTGCATGTGGGCGGCAGAACTCA---------
i nomLeu3.chr10             C 0 I 6
s rheMac3.chr19              59897258 217 +  64156825 ------AAGGAAATTGTCTTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCTTAA-------GCCCAGCCCTCCTCTATTCCGACGGAGGATGCCTGGCAATACTGCGGTATTTAGCGAGTGCAGACTTGGAGACCCCACCGGAGTTCTGCATTTCCCAGCGGAGTAAGCA-AG--GCCTCCCCGTGTCT--GCAGCGCGGCCTCCTGGTCGCTTGCATGTGGGCGGCAGAACGCA---------
i rheMac3.chr19             I 134 I 11
s macFas5.chr19              54914612 219 +  59248254 ------aaggaaaTTGTCTTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCTTAA-------GCCCAGCCCTCCTCTATTCCGACGGAGGATGCCTGGCAATACTGCGGTATTTAGCGAGTGCAGACTTGGAGACCCCACCGGAGTTCTGCATTTCCCAGCGGAGTAAGCA-AG--GCCTCCCCGTGTCTCCGCAGCGCGGCCTCCTGGTCGCTTGCATGTGGGCGGCAGAACGCA---------
i macFas5.chr19             I 35 I 2
s papAnu2.chr19              47033642 200 +  51301725 ------aaggaaattgtCTTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCTTAA-------GCCCAGCCCTCCTCTATTCCAACGGAGGATGCATGGCAATACTGCGGTATTTAGCGGGTGCAGACTCGGAGAC--------------------CCCAGCGGAGTAAGCAGAG--GCCTCCCCGTGTCTCTGCAGCGCGGCCTCCTGGTCGCTTGCATGTGGGCGGCAGAACTCA---------
i papAnu2.chr19             I 7 I 2
s chlSab2.chr6               46746879 220 +  50890351 ------aaggaaATTGTCTTTTTGCCCA--------------------------CAGCCTTG----------CACCCTGTAGATCCTTAA-------GCCCAGCCCTCCTCTATTCCGACGGAGGATGCATGGCAATACTGCGGTATTTAGCGAGTGCAGACTTGGAGACCCCACCGGAGTTCTGCATTTCCCAGGGGAGTAAGCAGAG--GCCTCCCCGTGTCTCTGCAGCGCGGCCTCCTCGTCACTTGCAAGTGGGCGGCCGAACTCA---------
i chlSab2.chr6              I 27 I 11
s calJac3.chr22              45324399 217 +  49145316 ------aagaaaACTGACTTTTTGCCCA--------------------------TAGCCTTG----------CACCCCGTAGATTCTGAA-------GCCCAGCCCTC---TATGCCAAGGGAGGATGCATGACTGTGCTGCGGCATTCAGCAGAGACAGGCTGGGAGGTCCCACCGGAGCTCGGCACTGCCCAGCGGAGTAAGCAAGG--CTGCCCCTGTGTCTCTGCAGCATGGCCTCCTTGTGGCTTCCATGTGGGCAGCAGAACTCA---------
i calJac3.chr22             I 1 I 6
s canFam3.chr1               19481077 275 - 122678785 GCTGGTCAGAAAATTTTCTTTTCATTCATTGTCCCCAGACATAGCCCTTTTCTGTAGTCTTGGTCTGTACCCAAACCTACAGCTCCACACCCTATGTGCCCTGCCCTCCTATATGCCAACAAACATTC-ATGGCAAGACTG--ATATTTGGACAAATAAAGTTTGGAGAACTCATGGGAGCTCTGCATTTCTCAGCTGAGTAAACGAGGGTGTCACCCCACGTCTCTGAACCTCA--CTTCCCATCTCCTGTGTGCGAGCACCAGAACAGAGGCATGTCA
i canFam3.chr1              C 0 C 0

a score=-565.000000
s hg38.chr19_GL949751v2_alt     37962 5 +   1002683 CAGAA
s panTro4.chr19              58974752 5 +  63644993 CAGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55841614 5 +  60714840 CGACG
i ponAbe2.chr19             I 6 C 0
s nomLeu3.chr10             102606151 5 - 106955855 CGACG
i nomLeu3.chr10             I 6 C 0
s macFas5.chr19              54914833 5 +  59248254 CAGGG
i macFas5.chr19             I 2 I 4
s papAnu2.chr19              47033844 5 +  51301725 CAGGG
i papAnu2.chr19             I 2 I 4
s calJac3.chr22              45324622 5 +  49145316 CGGTG
i calJac3.chr22             I 6 C 0
s canFam3.chr1               19481352 2 - 122678785 TA---
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46747099 11 +  50890351 I
e rheMac3.chr19              59897475 11 +  64156825 I

a score=1488230.000000
s hg38.chr19_GL949751v2_alt     37967 477 +   1002683 CCCACAGCCCAGA-----CCCACCCACCGCAGGTGTGCAACACCTGGAAGTCATTACTTCCACACACCGCATTTCCACCTGGACTGCCACTCCCACATGAGTTTTTCTCACCAGCCCAAGCCCATTCGTCCCAGTCCTGGA-GACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGCGGTCATAGCGTCCCTTCTGCCAGAACCAAGGCCCCGCCTTGGGTTTT-ACC-CTTCAAAGG-CGGAGCGGGACTGGGCCGGCCGCAGCTCTCCGGCTGCCCGGTTCGTCCCCAGGATGTGCAGATAGAGGAGGTTTTGCTCTGACACTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCACAACCGACTCAGGAAACAAGAAGCCGTCGATGATAACTTCTTCCCCATGAATCCGGTGTGTGTGGCCCCA-------CCCGCCCGAGCTCTGTCCTACCTTATCTGAAGTTCTG-CCAAGA-GTTTTCTGTAAA
s panTro4.chr19              58974757 477 +  63644993 CCCACAGCCCAGA-----CCCACCCACCGCAGGTGTGCAACGCCTGGAAGTCATTACTTCCACACACCGCATTTCCACCTGGACTGCCACCCCCACACGAGTTTTTCTCATCAGCCCAAGCCCATTCGTCCCAGTCCTGGA-GACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGCGGTCATAGCGTCCCTTCTGCCAGAACCAAGGCCCCGCCTTCGGTTTT-ACC-CTTCAGAGG-CGGAGCGGGACTGGGCCGGCCGCAGCTCTCCGGCTGCCCGGTTCGTCCCCAGGATGTGCAGATAGAGGAGGTTTTGCTCTGACACTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCACAACCGACTCAGGAAACAAGAAGCCGTCGATGATAACTTCTTCCCCATGAATCCGGTGTGTGTGGCCCCA-------CCCGCCCGAGCTGTGCCCTACCTTATCTGAAGTTCTG-CCAAGA-GTTTTCTGTAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55841619 477 +  60714840 CCCACAGCCCAGA-----CCCACCCACCACAGGTGTGCAACGCCTGGAAGTTGTTACTTCCACACACCGCATTTCCACCTGAACTTCCACTCCCACATGAGTTTTTCTCACCAGCCCAAGCCCATTCGTTCCAGTCCCGGA-GACTCACCGAGGCAAAGCAGGGAAAGTAATTCTGTAGTCATAGCGTCCCTTCTGCCAGAACCAAGGCCCCACCTTCGGTTTT-ACC-CTTCAAAGG-CGGAGAGGGACTGGGGCAGCCGCAGCTCTCTGGATGCCCGGTTCGTCCCCAGGATGTGCAGGTGGAGGAGGTTTTGCTCTGACACTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCACAACCGACTCAGGAAACAAGAAGCCGTCGATGACAACTTCTTCCCCATGAATCCGGTGTGTGTAGCCCCA-------CCCGCCCGAGCTCTGTCCTACCTTATCTGAAGTTCTG-CCAAGA-GTTTTCTGTAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102606156 478 - 106955855 CCCACAGCCCAGA-----CCCACCTACCGCAGGTGTGCAACGCATGGAAGTCATTACTTCCACACACCGCATTTCCACCTGGACTTCCACTCCCACATGAGTTTTCCTCACCAGCCCAAGCCCATTCGTCCCAGCCCTGGAGGACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGTGGTCATAGCGTCCCTTCTCCCAGAACCAAGGCCCCGCCTTCGGTTTT-ACC-CTTCAAAGG-CGGAGCGGGACTGGGGCGGCCGCAGCTCTCTGGCTGCCCGGTTCGTCCCCAGGATGTGCAGATGGAGGAGGTTTTGCTCAGACACTGTGGTTCTCTGCC-CCACTCTTGCAGTTCCCTTCTCACAACCGACTCAGGAAACAAGAAGCCGTCGATGACAACTTCTTCCCCCTGAATCCGGTGTGTGTGGCCCCA-------CCCGCCCAAGCTCTGTCCTACCTTATCTGAAGTTCTG-CCAAGA-GTTTTCTGTAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59897486 473 +  64156825 CCCCCAGCCCAGA-----CCCACCCACTGCAGGTGTGCAACGCGTGGAAGTCATTACTTCGACACACCGCATTTCCACCCGGACTTCCACTCCCCCATGAGTTTTTCGCACCAGCCCAAGCCCATTCGTCCCAGTCCTGGA-GACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGTGGTCATAGCGTCCCTTGGGCCAGAACCAAGGCCCCGCCTTGGGTTTT-ACCACTTCAAAGG-CGGAGCCGGACTGGGGCGGCCGCAGCTCTCTGGCTGCCCGGTTCCTCCCCAGGATGTGCAGATGGAGGAGGTTTTGCCCTGACGCTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCA-AACCGACTCAGGAAACAAGAAGCCGTCGATGACAACTTCTTCCTCATGAATCC--TGTGTGTGGCCACA-------CCCGCCTGAGCTCTGTCCTACCTTATCTGAAGTTCTG-CCAAGA---CTTCTGCAAA
i rheMac3.chr19             I 11 C 0
s macFas5.chr19              54914842 473 +  59248254 CCCCCAGCCCAGA-----CCCACCCACCGCAGGTGTGCAACGCGTGGAAGTCATTACTTCCACACACCGCGTTTCCACCCGGACTTCCACTCCCCCATGAGTTTTTCGCACCAGCCCAAGCCCATTCGTCCCAGTCCTGGA-GACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGTGGTCATAGCGTCCCTTGGGCCAGAACCAAGGCCCCGCCTTCGGTTTT-ACCACTTCAAAGG-CGGAGCCGGACTGGGGCGGCCGCAGCTCTCTGGCTGCCCGGTTCCTCCCCAGGATGTGCAGATGGAGGAGGTTTTGCCCTGACGCTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCA-AACCGACTCAGGAAACAAGAAGCCGTCGATGACAACTTCTTCCTCATGAATCC--TGTGCGTGGCCCCA-------CCCGCCTGAGCTCTGTCCTACCTTATCTGAAGTTCTG-CCAAGA---CTTCTGCAAA
i macFas5.chr19             I 4 C 0
s papAnu2.chr19              47033853 467 +  51301725 CCCCCAGCCCAGA-----CCCACCCACCGCAGGTGTGCAACGCGTGGAAGTCATTACTTCCACACACCGCGTCTCCACCCGGACTTCCACTCCCCCATGAGTTTTTCGCACCAGCCCAAGCCCATTCGTCCCGGTCCTGGA-GACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGTGGTCATAGCGTCCCTTGGGCCAGAACCAAGGCCCCACCTTCGGTTTT-ACCACTTCAAAGG-CGGAGCGGGACTGGG------GCAGCTCTCTGGCTGCCCGATTCCTCCCCAGGATGTGCAGATGGAGGAGGTTTTACCCTGACGCTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCA-AACCGACTCAGGAAACAAGAAGCCGTCGATGACAACTTCTTCCTCATGAATCC--TGTGTGTGGCCCCA-------CCCGCCTGAGCTCTGTCCTACCTTCTCTGAAGTTCTG-CCAAGA---CTTCTGcaaa
i papAnu2.chr19             I 4 C 0
s chlSab2.chr6               46747110 472 +  50890351 CCCCCAGCCCAGA-----CCCACCCACCGCAGGTGTGCAACGCGTGGAAGTCGTTACTTCCACACACCGCGTTTCCACCCGGACTTCCACTCCCCCATGAGTTTTTCGCACCAGCCCAAGCCCATTCGTCCCAGTCCTGCA-GACTCACCGAGGCAAAGCAGGGAGAGGAATTCTGTGGTCATAGCGTCCCTTGGGCCAGAACCAAGGCCCCGCCTTCGGTTTTAACCACTTCAAAGG-CGGAGCGGGACTGGGGCGGC--CAGCTCTCTGGCTGCCCGGTTCCTCCCCAGGATGTGCAGATGGAGGAGGTTTTACCCTGACGCTCTGGTTCTCTGCC-CCACTCTTGCAGTTTCCTTCTCA-AACGGACTCGGGAAACAAGAAGCCGTCGATGACAACTTCTTCCTCATGAATCC--TGTGTGTGGCCCCA-------CCCGCCTGAGCTCTGTCCTACCTTCTCTGAAGTTCTG-CCAAGA---CTTCTGCAAA
i chlSab2.chr6              I 11 C 0
s calJac3.chr22              45324627 443 +  49145316 CTCGCAGCCCAGC-----CTCACCCACCACAGG---------CGTGGAAGTCATTCCTTCCAAACACGGCCTTTCCACCTGGACTTCC-------CCTGAG-------CCCCTGTCCAAGCCCACATGTCCCAGTCTTGGA-GACTCACCGAGGCAAAGCACGGAGAGGAATTCTGTGGTCATAGTGACCCTTCTGCCAGAACCAATACCCCACGCTTGGCTTT-ACC-CTTTGGAGG-TGGAGCGGGACTGGGGTGGCCGTGGCTCCCTGGCTA-CCGCTTCGTCCCCAGGCTGTGCAGGTGGA-GAGGCTTCGCCCTGACGCTCTGGTTCTCTACC----------CAGTTTCCTTCTCACAGCCGACTTAGGAAACAAGAAACCGTTGATGACAACATCTTCCCCATGAGTCTGGTGTGTGTGGCCCCA-------CCCGCCTGAGCCGAGTCCTGCCTTATCTGAAGTTCTG-CCAAGA-CTTTTCTGTAAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19481354 462 - 122678785 -CCACAGCCCACAAAACTCTGACAGGTAGCATGTGTCCAGTACACAGAAGACATCATTT----------------CACATCAACCCCCGCTTCACCGTGAA-TTTTCTCACCCACCCAAACCCATCTGTCCCAGTCCTGGA-GACTCACCAAGGCAAAGCAGGGACAGGAATTCTGTGAGCATAGTGTCCCTTCCACCCAGAACAAAATCCCGTCTTCAGTTTT-ATA-GTTCAAAGGAAGAAGGGGGACTGGGCCATC-GAGGCTCCCT-CCTGCCCACCTTGTCTCCAAGATGTGTGGGTA---AAGGTTTTACCCTGACACT-TGGTTCTCCACTGCCTGGTGTACAGTTTCCTTTTCACAATCAAGTCAGGAAA-------CCATCAGTGACAACATCTCCCTCATAAATCCGGTGTGTATGGCTCCAGCTCCACCCACCCTGAGACCTGTCCTATCTCATTTGAAGTCTTGACCAAGACATTTTCTTTAAA
i canFam3.chr1              C 0 I 47883

a score=80697.000000
s hg38.chr19_GL949751v2_alt     38444 30 +   1002683 TGTAATTTTTTATTTTAAAACACTAATACC
s panTro4.chr19              58975234 30 +  63644993 TGTAATTTTTTATTTTAAAACACTAATACC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55842096 30 +  60714840 TGTAATTTTTTATTTTAAAACATTAATACC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102606634 30 - 106955855 TGTAATTTTTAATTTTaaaatattaatact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59897959 30 +  64156825 TGTAATGTTTTATTTTAAAGCGTTAATACC
i rheMac3.chr19             C 0 I 11
s macFas5.chr19              54915315 30 +  59248254 TGTAATGTTTTATTTTAAAGCATTAATACC
i macFas5.chr19             C 0 I 367
s papAnu2.chr19              47034320 30 +  51301725 tgtaatgttttattttaaagcattaataCC
i papAnu2.chr19             C 0 I 363
s chlSab2.chr6               46747582 30 +  50890351 TGTAATGTTTTATTTTAAAGCATTAATACC
i chlSab2.chr6              C 0 I 11
s calJac3.chr22              45325070 29 +  49145316 TGTAGT-TTTTATTTTACAACATTAATACC
i calJac3.chr22             C 0 I 2055
e canFam3.chr1               19481816 47883 - 122678785 I

a score=22893.000000
s hg38.chr19_GL949751v2_alt     38474 44 +   1002683 ggccggacgcggtggctcacgcctgtaatcccagcaccttgaga
s panTro4.chr19              58975264 44 +  63644993 ggccggacgcggtggctcacgcctgtaatcccagcaccttgaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55842126 44 +  60714840 ggccaggcgcggtggctcacacctgtaatcccagcactttgaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102606664 44 - 106955855 ggccaggcgcggtggctcgtgcctgtaatcccagcactttgaga
i nomLeu3.chr10             C 0 I 2757
e canFam3.chr1               19481816 47883 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747612 11 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59897989 11 +  64156825 I

a score=38645.000000
s hg38.chr19_GL949751v2_alt     38518 154 +   1002683 ggctgaggcgggcggatcacctgaggtcgggagttcaagaccagcctgaccaaaatggagaaacccccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctgtaatcccagctactccggaggctgagacaggagaatgg
s panTro4.chr19              58975308 154 +  63644993 ggctgaggcgggcggatcacctgaggtcgggagttcaagaccagcctgaccaaaatggagaaacccccgtgtctactaaaaatacaaaattagccaggcatggtggtgcatgcctgtaatcccagctactccggaggctgagacaggagaatgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55842170 152 +  60714840 ggctgaggcaggcggatcacctgaggtcgggagttcaagaccagcctgaccaaaatggataaa-ccccgtctcaattaaaaatacaaaattagctagccat-atggcgcacgcctgtaatcccagctactccagaggctgagacaggagaatGG
i ponAbe2.chr19             C 0 I 4912
e canFam3.chr1               19481816 47883 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102606708 2757 - 106955855 I
e chlSab2.chr6               46747612  11 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59897989  11 +  64156825 I

a score=11238.000000
s hg38.chr19_GL949751v2_alt     38672 130 +   1002683 cttgaacccaggaggcggaggttgctgtgagccaagattgtgccactgcactccagcctggacaacaacggtgaaactgtctcaaacaagcaaacaaacaaaCATTAATACCTATAGCTTTATAGCTTCC-
s panTro4.chr19              58975462 131 +  63644993 cttgaacccaggaggcggaggttgctgtgagccaagattgcgccactgcactccagcctgggcatcaacggcgaaactgtctcaaacaagcaaacaaacaaaTATTAATACCTATAGCTTTATAGCTTCCT
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102606708 2757 - 106955855 I
e chlSab2.chr6               46747612  11 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59897989  11 +  64156825 I

a score=18125.000000
s hg38.chr19_GL949751v2_alt     38802 33 +   1002683 GTGTACCCACTAGCCAGCTCCCCACAATGTTAA
s panTro4.chr19              58975593 33 +  63644993 GTGTACCCACTAGCCAGCTCCCCACAATGTTAA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59898000 33 +  64156825 GTGTACCCACTAGCCAGCTCCCCACAAGGTTAA
i rheMac3.chr19             I 11 I 329
s chlSab2.chr6               46747623 33 +  50890351 GTGTACCCACTAGCCAGCTCCCCACAAGGTTAA
i chlSab2.chr6              I 11 I 215
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102606708 2757 - 106955855 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I

a score=79743.000000
s hg38.chr19_GL949751v2_alt     38835 906 +   1002683 CCTTTTTTT------------GGGGGGCGGG--GGGgacagagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcatgggtttaaggattctcctgcctcagactcccaagtagctgggattacaagcatgcaccaccacacccagctaattttttgtagagatgggatttcaccatgtgggccaggctggtcttgaactcctggtctctagtgacccgcccacctcagcctcccaaagtgctgggattacaggcataagccactgtgcccggccaatggtaatctcttataattacagtactttttttttttttttttttttttgagacagaatctctgtcagccaggctggagtgcagtggcacaatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccgagttgccgggatgacaggtgtccgccaccactcttggctaattttttttgttctttttagtagaaacgaggttttgccatgttgcccaggctggtctcgaacttctgacctcaggcgatccgcctgcctcggcctcccaaactgctgggattacaggcgtgagccaccacgcccggcgtatggcacattttcaaaaccagagactttgcactggcatcacacgtttaaccaggttccagaggtcactcagatctcaccagtttgtgcataattcgtttctctttttctcttccTCTTCCttctatttctatttccttttctccttttccttcttttctcctgctcttcctcctcttccaccttcttttcctcctccCTTTTCTTTGCCTATGGGTATAGTTCTGTAACATTTTATTGCCTGTatgtatggctttatagaaccaccgccacaatcaagac
s panTro4.chr19              58975626 919 +  63644993 CCTTTTTTTTGGCGGGGGGGGGGGGGGTGGGGCGGGgacagagtcttgctctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcatgggtttaatgattctcctgcctcagactcccaagtagctgggattacaagcatgcaccaccacacccagctaattttttgtagggatgggatttcaccatgtgggccaggctggtcttgaactcctggtctcaagtgactcgcccacctcagcctcccaaagtgctgggattacaggcataagccactgtgcccggccaatggtaatctcttataactacagtac-tttattttttatttttttttttgagacagaatctctgttgcccaagctggagtgcagtggttcaatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagttgctgggatgacaggcgcccgccaccgctcttggctaatttttttcgttctttttagtagaaacgaggttttgccatgttgcccaggctggtctcaaacttctgacctcaggcgatccgcctgcctcggcctcccaaactgctgggattacaggcgtgaaccaccgcgcccggcgtatggtacattttcaaaaccagagactttgcactggcaccacacttttaaccaggttccagaggtcactcagatctcaccagtttcggcataattcgtttctctttttctcttccTCTtccttctatttctatttccttttctccttttccttcttttctcctgctcttcctcctcttccaccttcttttcctcctccGTTTTCtgtgcctatgggtatagttctgtaacattttattgcctgtatgtatggctttatagagccaccgccacaatcaagac
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102606708 2757 - 106955855 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I

a score=0.000000
s hg38.chr19_GL949751v2_alt     39741 505 +   1002683 acagaactgtcccaccaccacgtaggaactccctcatgctgcccctttataatcgctctcccaccctagcacctgctaatctgttctacgtctctatcactttgtcactttgagactcttgtataaatggaatcgtccatcgcctcaccttctgagggtgacctttttcactcagcacaatgcctgtgagattcattcaaatggttgtgtgtTATGATGATGGATACattagccgggcgtggtggcacacgcccatagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctgggtcacagagcaagactccatcaaaaaaaaagaattatctaatggatacaatgtgtgtcactgggttagtggatacctgaaagccctaacttcatcattttggaatctatccatgcaataaagttacacttgtaccccataaaCGTAtacaa
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102606708 2757 - 106955855 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I
e panTro4.chr19              58976545   0 +  63644993 C

a score=9528.000000
s hg38.chr19_GL949751v2_alt     40246 361 +   1002683 ataaaaaataatcgtctgggcatgatgacttaccgctgtaatcccagcactttgggaggctgaggcggga---------------------------ttacaggtgtgagcc---accatgcc---------cggccT-------------ATACTTTCTATCTTAATAACTACAAAAATAATAACTTGCTGGATGGGTCCCTGTGCCCA-CCCCGTCCT--GTCCTAAGTGAGGAGGATGGGAAGAA---AGCCATCGTCCTGTCCTGGTGCGGCTCTCAA-ACAGCTGGAAATGCTGGCTGCACAGGAAACT-CTAAGGATCGGCAGCTCTAGCGCATGCTACCCTTGGCAGCTGTGTGGTCTGTGGATAGAGAAGGACCAACCTGTGGTTAGTGG---AGGAAGAGGAGGAATATTGCTTT
s nomLeu3.chr10             102609465 405 - 106955855 acaaaaattaa----ctgggcgtggtggcaggtgcctgtaatcccagcgactcgggaggctaaggcaggagaatcgcttaaacccaggaggtggaggttgcag---tgagccgagatcttgccattgcactgcagcctgggtgacagagtgagact--ccgtctcaaaaa--aaaaaagtatta--------ggtggctcattgtgcccagttctgtcctccgtccccagtgagaagtacaggaagaaGAAAGCCACCATCCTTCCCTAGAGCAGATCCCAATAGAGCTTAGAGTGCAGGTTCCACAGAAAGCAGTTAAGGCTCAGCTGGTCCAACCCATCATTCCCCGGGCAGCTGTGGGATCTATGGATAGAGAAGGACAGAGCTGAGCTTAGAGGGGAAGGAAGGGGATGAAGACTGTTTT
i nomLeu3.chr10             I 2757 T 1379
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I
e panTro4.chr19              58976545   0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt     40607 578 +   1002683 GATAAGCACATCCTCAGAGTTATAACAGAGGAGACAATAGTTATAAAATAAGAATGATATTTACGAAAAATAATAAGACTATTAACAAGAAACAGCAACAAATCTTGAAAACAAAATGTAACAACAAAACATAAATGTTGACtttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctgcagtgcagtggtgagatctcggctcactgcaacctctgcctcccgggttccagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacgcccagctaatttttgtatttttagtagagatggggtttcaccatattggccaggatggtctcgatctcttgaccttgtgatccgcccacctcggcctcccagagtgctgggattataggcatgagccacagcacctggcAACTGTTGACATTTTACATCTGCACCAGTAAGACTGGCTACCAATTACAAGCAAATGGATGCCATGGATAGAATGGAATTCCTGCCAAACTGGGTAAAATGTTGGAAACATATAAAATAAAATGTAAAAGAAATGT
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102609870 1379 - 106955855 T
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I
e panTro4.chr19              58976545   0 +  63644993 C

a score=74650.000000
s hg38.chr19_GL949751v2_alt     41185 850 +   1002683 ATTATAAATACAggctgggcgtggtggctcatgcctgtaatcccagcactttgggaagccaaggtgggcagatcacttgaggtcaggagttcgagaccagcctcgccaacatggtgaaaccccgtctctactaacacacaaaaattagccaggcatggtggtgggcgcctgtaatcccagctacttgagaggctgaggcaggagagtcacttgaacctgagagggaggttgcagtgagctgaaattacgccactgcactccagcctgggtgacagagtgagactccctctccaaaaaaaaa------gaaagaaagaaTGTATTATAAATACATATgaccaagcacagtggctaacgcctgtagtcctggcactttgggaggccaagatgagaggatcacttgagtccaagagttcgagaccaagttgggccatatggtggaacccggcttctacaaaaaatacaaaatttagtccggcatgatggcacacacctgtggtcccagctactcagaaggctgagatgggaggattactttagcctgggaggtcgaggctgcagtgagccgtgatctagccactacactccagcctgggcgacagagtgagaccctgtctcaaaataaataaatataataaataaataaataTGTATATCCCAATATTGGACTAAATGCTGGTCCAGAAGCACAAAATAGAAAGAACGGAGAGGAAGTATTAATAAATATTACACAGGAAGCAATGTTTTTCCCTTCGTGTGGAGGAAGAGTTCCCCGCAGGTGAGAGTCACCTACTACTCAATCTGACTCTGAAGTTTTAAGTATTGATTCAAGTTATCAAaaatgtattaagggctg
s nomLeu3.chr10             102608491 852 - 106955855 ATTATAAATACAggctgggcatggtggctcatgcctgtaatcccagcactttgggaagctgaggtgggcagatcacttgatgtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaacacataaaaattagccgggcatggtggtgggcgcctgtaatcccagctacttgagaggctgaggcaggagaatcacttgaacctgagagggaggttgcagtgagctgaaattacaccactgcactccagcctgggtgaaagagcgagactccctctccaaaaaaaaaaaaaaagaaagaaagaaTGTATTATAAATACATATgaccaaacacagtggctaacgcctgtagtcctggcactttgggaggccaagatgagaggatcactcgagtccaagagttcgagaccaggttgggcaatatggtggaaccccgcttctacaaaaaatacaaaatttagccaggcgtgatggcacacacctgtggtcccagctactcagaaggatgagataggaggattgctttagcctgggaggtcgaggctgcagtgagccgtgatctagccactgcactccagcctgggtgacagagtgagaccctgtctcagaataaataaatataataaataaaTAG----GTATATCCCAATATTGGACTAAATGCTGGTCCAGAAGCACAAAATAGAAAGAATGGAGAGGAAGCGTTAATAAATATTATACAGGAAGCAATGTTTCTCCCTTCATGTGGAGGAAGAGTTCCCCGCAGGTGAGAGTCACCTACTACTCAATCTGACTCTGAAGTTTTAAGTATTGATTCAAGTTATCAAaagtgtattaagggctg
i nomLeu3.chr10             T 1379 C 0
e canFam3.chr1               19481816 47883 - 122678785 I
e ponAbe2.chr19              55842322 4912 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I
e panTro4.chr19              58976545   0 +  63644993 C

a score=78705.000000
s hg38.chr19_GL949751v2_alt     42035 307 +   1002683 ggcacggtgactcaagcctgcaatcccagcactttgggaggccgaggtgggctgatcacttgagctcaggtgttcaagaccagcctggccaacatgggtgaaaccccatctctactaaaagtacaaaaattagctgggcatggtggcaggcgcctgtaatcccagcgacttgggaggctaaggcaggagaatcgcttaaacccaggaggtggaggttgcagtgagccgagatcttgccattgcactgcagcctgggtgacagagcgagactccgtctcaaagaaaaaaaaaaaaa------gtattacgtggc
s ponAbe2.chr19              55847234 313 +  60714840 ggcacggtggctcaagcctgcaatcccagcactttgggaggccgaggtgggtggatcacttgagctcaggagttcaagaccagcctggccaacatgggtgaaaccctgtctctactaaaagtacaaaaattagctgggcgtggtggcaggcgcctgtaatcccagcgactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgaaatcttgccattgcactgcagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaGTATTAGGTGGC
i ponAbe2.chr19             I 4912 C 0
s nomLeu3.chr10             102609343 301 - 106955855 ggcatggtggctcaagcctgcaatcccagcactttgggaggcagaggtggggtgatcacttgagctcaggagttcaagaccagcttggccaacaccggtgaaaccccatctctactaaaagtacaaaaattaactgggcgtggtggcaggtgcctgtaatcccagcgactcgggaggctaaggcaggagaatcgcttaaacccaggaggtggaggttgcagtgagccgagatcttgccattgcactgcagcctgggtgacagagtgagactccgtctcaaaaaaaaaaa------------gtattaggtggc
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19481816 47883 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I
e panTro4.chr19              58976545   0 +  63644993 C

a score=32813.000000
s hg38.chr19_GL949751v2_alt     42342 83 +   1002683 tcattgtgcccaattctgtcctctgtccccagtgaaaagtacaggaagaaGAAAGCCACCATCCTGCCCTACAGCAGATCCCA
s ponAbe2.chr19              55847547 83 +  60714840 TCATTGTGCCCAGTTCTGTCCTCTGTCCCCAGTGAAAAGTACAGGAAGAAGAAAGCCACCATCCTGCCCTAGAGCAGATCCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102609644 83 - 106955855 tcattgtgcccagttctgtcctccgtccccagtgagaagtacaggaagaaGAAAGCCACCATCCTTCCCTAGAGCAGATCCCA
i nomLeu3.chr10             C 0 C 0
s canFam3.chr1               19529699 81 - 122678785 TCTTTATGCCCAGGTCTGTCCTCTGCCCCAGCTGAGGAGTACCG--AAGAGGAAACCATCATCTTGTCCTCAAGTACCTCTCA
i canFam3.chr1              I 47883 C 0
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I
e panTro4.chr19              58976545  0 +  63644993 C

a score=146613.000000
s hg38.chr19_GL949751v2_alt     42425 232 +   1002683 ACAGAGCTGAGAGTGCAGGTTCCACAGAAAGCGGTTAAGGCTCAGCTGGTCCA-----------ACCCATCATT-CCCTGGGCAGCTGTGGGATCTATGGCTAGAGAAGAACAGAGCTGAGCTTAGAGGGGAAGGAAGAGGAGGAAGATTGTTTTCTCCCGGCATCCAAACACAGCTTTTCAACCAGGGGGAGCACCACCCTCACTTCCCATCGCCC-CATCCAGGGATATTTGA-AAGGTATGAG
s panTro4.chr19              58976545 231 +  63644993 acagagcTGAGAGTGCAGGTTCCACAGCAGGCGGTTAAGGCTCAGCTGGTCCA-----------ACCCATCATT-CCCTGGGCAGCTGTGGGATCTATGGCTAGAGAAGGACAGAGCTGAGCTTAGAAGGGAAGGAAGAGGAGGAAGATTGTTTTCTCCCGGCATCTAAACACAGCTTTTCAACC-GGGGGAGCACCACCCTCACTTCCCATTGCCC-CATCCAGGGATATTTGA-AAGGTATGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55847630 228 +  60714840 ATAGAGCTGAGAGTGCAGGTTCCACAGAAAGCGGTTAAGGCTCAGCTGGTCCA-----------ACCCATCATT-CCCTGGGCAGCTGTGGGATCTA-GGATAG---AGGACAGAGCTGAGCTTAGAGGGGAAGGAAGCGGAGGAAGATTGTTTTCTCCCGGCATCCAAACACAGCTTTTCAACCAGGGGGAGCACCACCCTCACTTCCCATCGCCC-CATCCAGGGATATTTGA-AAGGTATGAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102609727 232 - 106955855 ATAGAGCTTAGAGTGCAGGTTCCACAGAAAGCAGTTAAGGCTCAGCTGGTCCA-----------ACCCATCATT-CCCCGGGCAGCTGTGGGATCTATGGATAGAGAAGGACAGAGCTGAGCTTAGAGGGGAAGGAAGGGGATGAAGACTGTTTTCTCCTGGCATCCAAACACAGCTTTTCAACCACGGGGAGCACCACCCTCACTTCCCATCGCCC-CATCCAGGGATATTTGA-AAGGTATGAG
i nomLeu3.chr10             C 0 C 0
s canFam3.chr1               19529780 234 - 122678785 ACAGGGGTGAGAATGAATGTTCCACTGGAAGCTGTTCAAGGTCAGTGGGTTTAACTGGATCAACACCCATCATTCCCCTGGGCAGCTAAGGAGCCTATAAGTACAGAAGGACAGAGAGAGGTC---AGGGGAGGGAGGAAGAGAAAGATTA-TTTCTCCTGGCCTCCAAACACAGGTTATCCACC------AGAAATACCCT-GCTCCGCATCATCTATATCTAGGGATGTCTGAGAAAGTAAAC-
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747656 215 +  50890351 I
e papAnu2.chr19              47034350 363 +  51301725 I
e macFas5.chr19              54915345 367 +  59248254 I
e rheMac3.chr19              59898033 329 +  64156825 I

a score=15648.000000
s hg38.chr19_GL949751v2_alt     42657 22 +   1002683 AGTAGTGGCTTTTTTGTTGTTG
s panTro4.chr19              58976776 22 +  63644993 AGTAGTGGCTTTTTTGTTGTTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55847858 17 +  60714840 AGTAGCGGCTTTTTTGT-----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102609959 21 - 106955855 AGTAGTGGCTGTTTTGTTTGT-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54915712 18 +  59248254 AGTAGTGGCTTTTTTTTC----
i macFas5.chr19             I 367 C 0
s papAnu2.chr19              47034713 17 +  51301725 AGTAGtggctttttttc-----
i papAnu2.chr19             I 363 C 0
s canFam3.chr1               19530014 22 - 122678785 AGTACTTGTTTGTTTTTTTTTT
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46747656 215 +  50890351 I
e rheMac3.chr19              59898033 329 +  64156825 I

a score=346230.000000
s hg38.chr19_GL949751v2_alt     42679 132 +   1002683 TTGTTTCACA-ATAATTAGGTCTCCAACAGGTGTTCAATGGGAAAGGAAGTATTAGCAATGTCGAGTTACGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGGACTATTGCACTTTAAACACCATT
s panTro4.chr19              58976798 132 +  63644993 TTGTTTCACA-ATAATTAGGTCTTCAACAGGTGTTCAATGGGAAAGGAAGTATTAGCAATGTCGAGTTACGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGGACTATTGCACTTTAAACACCATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55847875 132 +  60714840 TTGTTTCACA-ATAATTAGGTCGTCAACAGGTGTTCAATGGGAAAGGAAGTATTAGTAATGTTGAGTTACGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGGATTATTGCACTTTAAACCCCATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102609980 132 - 106955855 TTGTTTCACA-ATAATTAGGTCTTCAACAGGTGTTCAATGGGAAAGGAAGTATTAGCAATGTCGAGTTACGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGAACTATTGCACTTTAAACACCATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59898362 132 +  64156825 TTGTTTCACA-ATAATTGGGTCTTCAACAGGTGTTCAATGGGAAAGGAAGTATTAGCAATGTCGAGTTATGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGAACTATTGCACTTTAAACACGATT
i rheMac3.chr19             I 329 C 0
s macFas5.chr19              54915730 132 +  59248254 TTGTTTCACA-ATAATTGGGTCTTCAACAGGTGTTCAATGGGAAAGGAAGTATTAGCAATGTCGAGTTATGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGAACTATTGCACTTTAAACACGATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47034730 132 +  51301725 ttgtgtcacA-ATAATTGGGTCTTCAACAGGTGTTCAATGGGAAAGGAAGTATTAGCAATGTCGAGTTATGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGAACTATTGCACTTTAAACACGATT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46747871 132 +  50890351 TTGTTTCACA-ATAATTGGGTCTTCAACAGGTGTTCAATGGGAAAGGAAGTCTTAGCAATGTCGAGTTATGTGTTCCTATAATGGACAAGACAGTCTCACATGGTGAAGAACTATTGCACTTTAAACACGATT
i chlSab2.chr6              I 215 C 0
s canFam3.chr1               19530036 123 - 122678785 -CCTTCCACCTTTAATGTCGGTTTTAGTTGGTGTTTTACAGGGAGGGAA--AATAG-------ATGCTAAGTGTTTCTATAACCAATGGGACAATCAAACATGGTAAAGAAATAATCTCACCTAAAGGCCATT
i canFam3.chr1              C 0 I 103
e calJac3.chr22              45325099 2055 +  49145316 I

a score=1132441.000000
s hg38.chr19_GL949751v2_alt     42811 504 +   1002683 TGTggccatgcccggtggtgcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggccaggagttcgagaccagcctgaccaatgtggcgaaaccccgtctctcct---------------------------aaaaatac-----aaaaaaattagccagatggtggcaggtgcctgtagttgcagccacttgggaggctgaggcaggagaatcacttgaacctggcaggcggaggttgcaatgagccgagatcgcaccactgcactctggcctgggcgacaaagcgagactctgtctcaaaacaaacaaacaaacaaaaaaacaaaaaATACCATTTGTGCCCATGTGGAGAAACGTGTGAAGTCCCCATGGTAGAGTCTGATGTTTAAAGAACCCCA-TATGgattgaatgcacagc-agggcggctacagttcacaaggctgcactgggtaattacaatttgctaagaaggtggatcttaaACAGAAAGGTCCATAAGCTAGATTGAGATAACCATT
s panTro4.chr19              58976930 503 +  63644993 TGTggccatgcccggtggcgcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggccaggagttcgagaccagcctgaccaatgtggcgaaaccctgtctctcct---------------------------aaaaatac-----aaaaaaattagccggatggtggcaggtgcctgtagttgcagctactcgggaggctgaggcaggagaatcacttgaacctggcaggcggaggttgcaacgagccgagatcgcaccactgcactctggcctgggcgacagagcaagactctgtctcaaaacaaacaaacaaacaaaaaa-caaaAAATACCATTTGTGCCCATGTGGAGAAATGTGTGAAGTCCCCATGGTATAGTCTGATGTTTAAAGAACCCCA-CATGgattgaatgcacagc-agggccgctacagttcacaaggctgcactgggtaattataatttgctaagaaggtggaccttaaACAGAAAGGTCCATAAGCTAGATTGAGATAACCATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55848007 531 +  60714840 TGTGGCCCCCCCcggtggcgcccccctttaatcccaccactttgggggggtgaggcagggggatcacttgaggccaggagtttgagaccagcctggccaatggggggaaaccctgttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-----aaaaaaataagctggatggtggcaggtgcctgtagttgcagctacttgggaggctgaggcaggagaatcacttgaacctggcaggcggaggttgcaatgagctgagatcgcaccactgcactctggcctgggcgacagagtgagactctgtctcaaaacaaacaaacaaacaaaaaaacaaaAAATACCATTTGTGCCCATGTGGAGAAACATGTGAAGTCTCCATGGTAGAGTGTAATGTTTAAAGAACCCCG-TATGgattgaatgcacagc-agggcggctacagttcacaaggctgcaccgggtaattgcaatttgctaagaaggtggatcttaaACAGAAAGGTCCATAAGCTAGATTGAGATAACCATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102610112 500 - 106955855 TGTggccacgcctggtggcgcacacctgtaatcccagcattttgggaggctgaggcaggtggatcacttgaggccaggagttcgagaccagcctggccaatgtagcgaaaccccgtctctact---------------------------aaaaatag-----aaaaaaattagccagatggtggcaggtgcctgtagttgcagctacttaggaggctgaggcaggagaatcacttgaacctggcaggcagaggttgcaatgagccgagattgcaccattgcactctggcctgggtggcagagtgagactctgtctcaaaacaaacaaacaaaaaaacaa-----aaaTACCTTTTGTGCCCATGTGGAGAAACATGTGAAGTCCCCATGGTAGAGTCTGATGTTTAAAGAACCCCATTATGgattgaatgcacagc-agggcggctacagttcacaaggctgcactgggtaattagaatttgctaagaaggtggatcttaaACAGAAAGGTCCATAAGCTAGATTGAGATAACCATT
i nomLeu3.chr10             C 0 I 111
s rheMac3.chr19              59898494 495 +  64156825 TGTggtcaggcgcagtggcgcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggccaggaggtcgagaccagcctggccaatgcggcgaaactccgtctctact---------------------------caaaatac-----aaaaaaat-ggctgaatggtggcaggtgcccgtagttgcagccactcaggaggctgaggcaggagaatcacttgaccccaggaggcggaggttgcaatgagccgagatcgtgccactgcactctggcctgggcgacagagcgagagtctgtctca----aaacaaacaaacaaacaa----aaaaTACCATTTGTGCCCATGTGGAGAAATGTGTGAAGTCCCCATGGTAGAGTCTGATGTTTAAAGAACCCCA-TATGgattgaatgcacagcaagggcggatacagttcacaaggctgcactgggtaattacaatttgctaagaaggtggatcctaaACAGAAAGGTCCATAAGCTAGATTGAGATAATCAC-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54915862 499 +  59248254 TGTggtcaggcgcagtggcgcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggccaggaggtcgagaccagcctggccaatgcggcgaaactccgtctctact---------------------------aaaaatac-----aaaaaaat-ggctgaatggtggcaggtgcctgtagttgcagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcaatgagccgagatcgtgccactgcactctggcctgggcgacagagcgagagtctgtctcaaaacaaacaaacaaacaaacaa----aaaaTACCATTTGTGCCCATGTGGAGAAACGTGTGAAGTCCCCATGGCAGAGTCTGATGTTTAAAGAACCCCA-TATGgattgaatgcacagcaagggcggatacagttcacaaggctgcactgggtaattacaatttgctaagaaggtggatcctaaACAGAAAGGTCCATAAGCTAGATTGAGATAATCAC-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47034862 491 +  51301725 tgtggtcaggcgcagtggcgcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggccaggaggtcgagaccagcctggccaatgcggcgaaactccgtctctact---------------------------aaaaatac-----aaaaaaat-ggctgaatggtggcaggtgcctgtagttgcagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcaatgagccgagatcgtgccactgcactctggcctgggcgacagagtgagagtctgtctca--------aaacaaacaaacaa----aaaataccatttGTGCCCATGTGGAGAAACGTGTGAAGTCCCCATGGCAGAGTCTGATGTTTAAAGAACCCCA-TATGGATTGAATGCACAGCAAGGGCAGATACAGATCACAAGGCTGCACTGGGTAATTGCAATTTGCTAAGAAGGTGGATCCTAAACAGAAAGGTCCATAAGCTAGATTGAGATAATCAC-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748003 504 +  50890351 TGTggtcaggcgcagtggcatatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggccaggaggtcgagaccagcctggccaatgcggcgaaattccgtctctact---------------------------aaaaatacaaaaaaaaaaaat-ggctgaatggtggcaggtgcctgtagttgcagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcaatgagccgagatcgtgccactgcactctggcctgggcgacagagcgagagtctgtctcaaaacaaacaaacaaacaaacaa----aaaaTACCATTTGTGCCCATGTGGAGAAACGTGGGAAGTCCCCACGGTAGAGTCTGATGTTTAAAGAACCCCA-TATGgattgaatgcacagcaagggcggatacagttcacaaggctgcactgggtaattgcaatttgctaagaaggtggatcctaaACAGAAAGGTCCATAAGCTAGATTGAGATAATCAC-
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=99728.000000
s hg38.chr19_GL949751v2_alt     43315 43 +   1002683 GTCACAATGAGTGAAATTTCTTCCTCGGCACACAATTAATTAC
s panTro4.chr19              58977433 43 +  63644993 GTCACAATGAGTGAAATTTCTTCCTCGGTACACAATTAATTAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55848538 43 +  60714840 GTCACAATTAGTGAACTTTCTTCCTTAGTACACAATTAATTAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102610723 43 - 106955855 GTCACAATTAGTGAAATTTCTTCCTTGGTACACAATAAATTAC
i nomLeu3.chr10             I 111 T 111
s rheMac3.chr19              59898989 43 +  64156825 GTTACAATTAGTGAAATTTCTTCCTTGGTACACAATTAATTAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54916361 43 +  59248254 GTTACAATTAGTGAAATTTCTTCCTTGGTACACAATTAATTAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47035353 43 +  51301725 GTTACAATTAGTGAAATTTCTTCCTTGGTACACAATTCATTAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748507 43 +  50890351 ATTACAATTAGTGAAATTTCTTCCTTGGTACACAATTAATTAC
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=4108.000000
s hg38.chr19_GL949751v2_alt     43358 4 +   1002683 TTAG
s panTro4.chr19              58977476 4 +  63644993 TTAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55848581 4 +  60714840 TTAG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59899032 4 +  64156825 TTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54916404 4 +  59248254 TTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47035396 4 +  51301725 TTCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748550 4 +  50890351 TTCG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I
e nomLeu3.chr10             102610766 111 - 106955855 T

a score=167865.000000
s hg38.chr19_GL949751v2_alt     43362 68 +   1002683 TTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAAGTCCATTAGCTACATTGTGATAATCAT
s panTro4.chr19              58977480 68 +  63644993 TTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAAGTCCATTAGCTACATTGTGATAATCAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55848585 68 +  60714840 TTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAAGTCCATTAGCTACATTGTGATAATCAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102610655 68 - 106955855 TTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAAGTCCATTAGCTACATTGTGACAATCAT
i nomLeu3.chr10             T 111 T 111
s rheMac3.chr19              59899036 67 +  64156825 TTAGTAGGAAAGTTCCCAG-AGGTGGATCTTAAACAGAAAGGTCCATTAGCTACATTGTGATAATCAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54916408 67 +  59248254 TTAGTAGGAAAGTTCCCAG-AGGTGGATCTTAAACAGAAAGGTCCATTAGCTACATTGTGATAATCAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47035400 68 +  51301725 TTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAGGTCCATTAGCTACATTGTGATCATCAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748554 68 +  50890351 TTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAGGTTCATTAGCTACATTGTGATAATCAT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=442165.000000
s hg38.chr19_GL949751v2_alt     43430 195 +   1002683 GTCACAATTAGTGAAATTTCTTCTTTGGTACACAATTAATTATTTAGTAGGGAGGTTCCCAGAAGGTGGATCTTAAACAGAAAGGTTCGTTAGCT-ACATTGTGATACTCATGTCACAATCAGTGAAATTTCTTCCTTGGTACACAATAAATTACTTAGTAGGAGGGTTCCCCACCCGTAGGCTTATGGGGGTATA
s panTro4.chr19              58977548 195 +  63644993 GTCACAATTAGTGAAATTTCTTCTTTGGTACACAATTAATTATTTAGTAGGGAGGTTCCCAGAAGGTGGATCTTAAACAGAAAGGTTCGTTAGCT-ACATTGTGATACTCATGTCACAATCAATGAAATTTCTTCCTTGGTACACAATAAATTACTTAGTAGGAAGTTTCCCCACCCGTAGGCTTATGGGGGTATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55848653 195 +  60714840 GTCACAATTAGTGAAATTTCTTCCTTGGTACACAATTAATTATTTAGTAGGGAGGTTCCCAGAAGATGGATCTTAAACAGAAAGATTCATTAGCT-ACATTGTGATAATCATGTCACAATTAGTGAAATTTCTTCCTTGGTACACAATAAATTACTTAGTAGGAGGGTTCCCCACTCGCAGGTTTATGGGGGTATA
i ponAbe2.chr19             C 0 I 9
s nomLeu3.chr10             102610612 195 - 106955855 GTCACAATTAGTGAACTTTCTTCCTTAGTACACAATTAATTACTTAGTAGGAAAGTTCCCAGAAGGTGGATCTTAAACAGAAAAGTCCATTAGCT-ACATTGTGACAATCATGTCACAATTAGTGAAATTTCTTCCTTGGTACACAATAAATTACTTAGCAGGAGGGTTCCCCACTCGTAGGTTTATGGGGGTATA
i nomLeu3.chr10             T 111 C 0
s rheMac3.chr19              59899103 194 +  64156825 GTCA-AATTAGTGAAATTTCTTCGTTGGTGCAAAATAAATTATTTAGTAGGAAAGGTCCCAGAAGGTGGATCTGAAAGAGAAAAGTCCATTAGTT-ACATTGTGATAATCACATCACAATTAGTGAAATTTCTTCCTTGGCACACAATAAATTACTTAGTAGGAGGGTTCCCCACTTGTAGGTTTATGGGGGTATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54916475 195 +  59248254 GTCACAATTAGTGAAATTTCTTCCTTGGTGCAAAATAAATTATTTAGTAGGAAAGGTCCCAGAAGGTGGATCTGAAAGAGAAAAGTCCATTAGTT-ACATTGTGATAATCACATCACAATTAGTGAAATTTCTTCCTTGGCACACAATAAATTACTTAGTAGGAGGGTTCCCCACTTGTAGGTTTATGGGGGTATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47035468 195 +  51301725 GTCACAATTAGTGAAATTTCTTCCTTggtgcaaaataaattatttagtagGAAAGGTCCCAGAAGGTGGATCTTAAAGAGAAAAGTCCATTAGTT-ACATTGTGATAATCACATCACAATTAGTGAAATTTCTTCCTTGGCACACAATAAATTACTTAGCAGGAGGGTTCCCCACTTGTAGGTTTATGGGGGTATA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748622 191 +  50890351 GTCACAATTAGTGAAATTTCTTCCTTGGTACAAAATAAATTATTTAGTAGGAAAGGTCCCAGAAGGTGGATCTTA-----AAAAGTCCATTAGTTAACATTGTGATAATCACATCACAATTAGTGAAATTTCTTCCTTGGCACACAATAAATTACTTAGTAGGAGGATTCCCCACTTGTAGGTTTATGGGGGTATA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=110265.000000
s hg38.chr19_GL949751v2_alt     43625 63 +   1002683 ATTGATAAATCAAAATGGAAtatatcaaaacatcacgttgtacacaaatataactccattttt
s panTro4.chr19              58977743 63 +  63644993 ATTGATAAATCAAAATGGAAtatatcaaaacatcacgttgtacacaaatataactccattttt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102610807 60 - 106955855 ACTGACAAATCGAAATGGAAtatatcaaaacatcatgttgtacacaaatataactccatt---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59899297 63 +  64156825 ATTGACAAATCAAAATGGAAtatataaaaacatcacgttgtacacaaatataattccattttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54916670 63 +  59248254 ATTGACAAATCAAAATGGAAtatataaaaacatcacgttgtacacaaatataattccattttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47035663 63 +  51301725 ATTGACAAATCAAAATggaatatatcaaaacatcacgttgtacacaaatataattccattttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748813 63 +  50890351 ATTGACAAATCAAAATGGAAtatatcaacacatcacgttgtacacaaatataattccattttt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e ponAbe2.chr19              55848848  9 +  60714840 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=493674.000000
s hg38.chr19_GL949751v2_alt     43688 207 +   1002683 atttgtcgattagatctcaataaatctggaGCAGAAGAGAATTCCATATCTCTACAGCAGCCCATGAAAGAGAGAGGGGATCCGTGTTTTAACTTGGATCtgttactggaaaggggtcccagtccagaccccaagagagggttctcggatctcacacaagtaagaactcagggtgagtacacagagtaaagtgaaggcaagtttatt
s panTro4.chr19              58977806 207 +  63644993 atttgtcgattagatctcaataaatctggaGCAGAAGAGAATTCCATATCTCTACAGCAGCCCATGGAAGAGAGAGGGGATCCGTGTTTTAACTTGGATCtgttactggaaagaggtcccagtccagaccccaagagagggttctcggatctcacacaagtaagaactcagggtgagtacacagagtaaagtgaaggcaagtttatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55848857 207 +  60714840 GTTTGTTGATTAGATCTCAATAAATCTGGAGCAGAAGAGAATTCCGTATCTCTACAGCAGCCCATGAAAGAGAGAGGGGCTCTGTGTTTTAACTTGGATCtgttactggaaaggggtcccagtccagaccccaagagagggttctcggatctcacacaagtaagaactcagggcgagtacacagagtaaagcgaaagcaagtttatt
i ponAbe2.chr19             I 9 C 0
s nomLeu3.chr10             102610867 205 - 106955855 -tttgtcgattagatctcaataaatctggaGCAGAAGAGAATTCCGTATCTCTACAGCAGCCCAGGAAAGAGAGAGGGGCTCCATTTTTTAACGTGGATCtgttactggaaagggttcccagtccagaccccaagagagggttcttggatctcacacaagaaagaactcagggcgagtccacggagttta-tggaagcaagtttatt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59899360 207 +  64156825 atttgtcgattagatctcaatacatctagaGCAGAAGAGAATTCCCTATCTCTACAGCAGCCCATGAAAGAGAGAGGGGCTCCGTGTTTTAACTTGGATCtgttattggaaaggggtcccagtccagaccccaagagagggttctcggatctcagacaagaaagaactcagggcgagtccacggagtgaaatgaaagcaagtttatt
i rheMac3.chr19             C 0 I 317
s macFas5.chr19              54916733 207 +  59248254 atttgtcgattagatctcaatacatctagaGCAGAAGAGAATTCCCTATCTCTACAGCAGCCCATGAAAGAGAGAGGGGCTCCGTGTTTTAACTTGGATCtgttattggaaaggggtcccagtccagaccccaagagagggttctcggatctcagacaagaaagaactcagggcgagtccacggagtgaaatgaaagcaagtttatt
i macFas5.chr19             C 0 I 407
s papAnu2.chr19              47035726 207 +  51301725 atttgtcgaTTAGATCTCAATACATCTAGAGCAGAAGAGAATTCCCTATCTCTACAGCAGCCCATGAAAGTGAGAGGGGCTCCGTGTTTGAACTTGGATCTGTTATTGGAAAGGGGTCCcagtccagaccccaagagagggttctcgGATCTCAGACAAGAAAGAACTCAGGGCGAGTCCAcggagtaaagtgaaagcaagtttatt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46748876 207 +  50890351 atttgtcgattagatctcaatacatctagaGCAGAAGAGAATTCCCTATCCCTACAGCAGCCCATGAAAGAGAGAGGGGCTCCGTGTTTTAACTTGGATCtgttattggaaaggggtcccagtccagaccccaagagagggttctcggatctcagacaagaaagaactcagggcaagtccacggagtgaagtgaaagcaagtttatt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=830533.000000
s hg38.chr19_GL949751v2_alt     43895 341 +   1002683 aagaaagtcaaggaatatggctgctccataggcagagcagtccagagggctgtcagtcggctatttttgtggttatttcttgatcgtatgctaaacaaggggtggactgttcatgagttttccaggaaaggggaggggatttccctggaactgagagtccctccc-tcgtttagcttctggaagttgccatggcatctgtaagctgtcttggtggcggtgggagtgtcttttagcatgcaaatgcattataattagcaaataatgtgcagtgaggacgaccagaagtcacttttgttgccatcttggatttggcaggttttggctggcttctttgttgcatc
s panTro4.chr19              58978013 341 +  63644993 aagaaagtcaaggaatatggctgctccataggcagagcggtccagagggctgtcagtcggctatttttgtggttatttcttgatcgtatgctaaacaaggggtggactgttcatgagttttccaggaaaggggaggggatttccctggaactgagagtccctccc-tcgtttagcttctggaagttgccatggcatctgtaagctgtcttggtggcggtaggagtgtcttttagcatgcaaatgcattataattagcaaataatgcgcagtgaggacgaccagaagtcacttttgttgccatcttggatttggcaggttttggctggcttctttgttgcatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55849064 341 +  60714840 aagaaagtcaaggaatatggctgctccataggcagagcggtccagagggctgtcggtcggctatttttatggttatttcttgatcatatgctgaacaaggggtggactgttcatgagttttccaggaaaggggaggggattttcctggaactgagagttcctccc-tcgtttagcttctggaagttgccatggcatctgtaagttgtcttggtgccagtgggagtgtcttttagcatgcaaatgcattataattagcaaataatgtgcagtgaggacgaccagaagtcacttctgttgccatcttggatttggcaggttttggctggcttctttattgcatc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102611072 341 - 106955855 aagaaagtcaaggaatatggctgctccataggcagagcggtccagagggctgtcggtcggctgtttttgtggttatttcttgatcgtatgctaaacaaggggtggactgttcatgaattttccaggaaaggggaggggatttccctggaactgagagttcctccc-tcgtttagcttctggaagttgccatggcatctgtaagctgtcttggtgctggagggagtgtcttttagcatgcaaatgcatcataattagcaaataatgtgcagtgaggatgaccagaagtcacttttgttgccatcttggatttggcaggttttggctgacttctttattgcatc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59899884 342 +  64156825 aagaaagtcaaggactatggctgctccacaggcagagcagtccagagggctgtcggtcagctatttttgtggttatttctcgatcatatgctaaacaaggggtggactgttcatgagttttccaggaaagggcaggggatttccctggaactgagagttcctccctttttttagcttctagaagttgctatggcatctgtaagccgccttggtggtggtgggagtgtcttttagcatgcaaaggcattataattagcaaataatgtgcagtgaggacaaccagaagtcactattgttgccatcttggttttggcaggttttggctggcttctttattgcatc
i rheMac3.chr19             I 317 C 0
s macFas5.chr19              54917347 342 +  59248254 aagaaagtcaaggactatggctgctccacaggcagagcagtccagagggctgtcggtcggctatttttgtggttatttctcgatcatatgctaaacaaggggtggactgttcatgagttttccaggaaagggcaggggatttccctggaactgagagttcctccctttttttagcttctagaagttgctatggcatctgtaagccgccttggtggtggtgggagtgtcttttagcatgcaaaggcattataattagcaaataatgtgcagtgaggacaaccagaagtcactattgttgccatcttggttttggcaggttttggctggcttctttattgcatc
i macFas5.chr19             I 407 C 0
s papAnu2.chr19              47035933 341 +  51301725 aagaaagtcaaAGACGATGgctgctccataggcagagcagtccAGAGGGCTGTCGGTCGgctatttttgtggttatttctcGATCATATGCTAAGCAAGGGGTGGACtgttcatgagttttccaggaaaggggaggggatTTCCCTGGAACTGAGAGTTCCTCCC-CCTATTAGCTTCTGGaagttgccatggcatctgtaagccgccttggtggtggtgggagtgtcttttagcatgcaaatgcattataattagcaaataatgtgcagtgaggacaaccagaagtcactattgttgccatcttggttttggcaggttttggctggcttctttattgcatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46749083 341 +  50890351 aagaaagtcaaggactatggctgctccacaggcagagcagtccagagggctgtcggccggcgatttttgtggttatttctcgatcatatgctaaacaaggggtggactgttcatgagttttccaggaaaggggaggggatttccctggaactgagagttcctcct-ccttttagcttctagaagttgctatggcatctgtaagccgccttggtggtggtgggagtgtcttttagcatgcagatgcgttataattagcaaataatgtgcagtgaggacaaccagaagtcacttttgttgccatcgtggttttggcaggttttggctggcttctttattgcatc
i chlSab2.chr6              C 0 I 26
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=7736.000000
s hg38.chr19_GL949751v2_alt     44236 11 +   1002683 tttg--tgtcttt
s panTro4.chr19              58978354 11 +  63644993 tttg--tgtcttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55849405 11 +  60714840 tttg--tgtcttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102611413 11 - 106955855 tttg--tgtcttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59900226 13 +  64156825 tctcttttttttt
i rheMac3.chr19             C 0 I 11
s macFas5.chr19              54917689 12 +  59248254 tctc-tctttttt
i macFas5.chr19             C 0 I 11
s papAnu2.chr19              47036274 11 +  51301725 tctc--ttttttt
i papAnu2.chr19             C 0 I 11
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I
e chlSab2.chr6               46749424 26 +  50890351 I

a score=366991.000000
s hg38.chr19_GL949751v2_alt     44247 144 +   1002683 gggtctttgtgacctgtatgttgtgacctgtctcatcctgtgacttagaaagcctcaaccccctgggaatgcagtccagcaggttgcagcctcagtttacccagccccggttcaagatggagtcactctggtttgaaggcctct----
s panTro4.chr19              58978365 144 +  63644993 gggtctttgtgacctgtatgttgtgacctgtctcatcctgtgacttagaaagccttaaccccctgggaatgcagtccagcaggttgcagcctcagtttacccagccccggttcaagatggagtcactctggtttgaaggcctct----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55849416 148 +  60714840 gggtctttgtgacctgtgtgttgtgacccgtctcatcgtgtgacttagaaagccttaaccccctgggaatgcagtccagcaggttgcagcctcagtttacccggccccggttcaagatggagtcactctggtttgaaggcctctgaca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102611424 148 - 106955855 gggtctttgtgacctgtatgttgtgacctgtctcatcctgtgacttagaaagccttaaccccctgggaatgcagtccagcaggttgcagcctcagtttacccagccccggttcaagatggagtcactctggtttgaaggcctccgaca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59900250 148 +  64156825 gggtctttgtgatctgtatgttgtaacctgtctcatcctgtgacttagaaagtcttaaccccctgggaatgcagtccagcaggtagcagcctcagtttacccagccccggttcaagatggagtcactctggtttgaaggcctctgaca
i rheMac3.chr19             I 11 C 0
s macFas5.chr19              54917712 148 +  59248254 gggtctttgtgatctgtatgttgtaacctgtctcatcctgtgacttagaaagtcttaaccccctgggaatgcagtccagcaggtagcagcctcagtttacccagccccggttcaagatggagtcactctggtttgaaggcctctgaca
i macFas5.chr19             I 11 C 0
s papAnu2.chr19              47036296 148 +  51301725 ggGTCTTTGTGATCTGTATGTTGTgacctgtctcatcctgtgacttagaaagTCTTAACCCCCTGGGAATGCAGTCCAGCAGGTtgcagcctcagtttacccagcCCCggttcaagatggagtcactctggtttgaaGGTCTCTGACA
i papAnu2.chr19             I 11 C 0
s chlSab2.chr6               46749450 148 +  50890351 gggtctttgtgatctgtatgttgtgacctgtctcatcctgtgacttagaaagtcttaaccccctgggaacacagtccagcaggttgcagcctcagtttacccagccccagttcaagatggagtcactctggtttgaaggtctctgaca
i chlSab2.chr6              I 26 C 0
e canFam3.chr1               19530159 103 - 122678785 I
e calJac3.chr22              45325099 2055 +  49145316 I

a score=442040.000000
s hg38.chr19_GL949751v2_alt     44391 157 +   1002683 gaTTCACCTGGAGACACATTCCGGCTGTACCAGGCCTCCACCAGGAAAGCTCCCATGATAACCACAATTACGGCAGCCAGACCCAGTCGTACGAAGTTACCCAGGGAGTAGTTGCTCGATGTGGTACCTGGGGGAACTGAAAGAGAGAAGGGGCTCA
s panTro4.chr19              58978509 157 +  63644993 gaTTCACCTGGAGACACATTCCGGCTGTACCAGGCCTCCACCAGGAAAGCTCCCATGATAACCACAATTATGGCAGCCAGACCCAGTCGTACGAAGTTACCCAGGGAGTAGTTGCTCGATGTGGTACCTGGGGGAACTGAAAGAGAGAAGGGGCTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55849564 157 +  60714840 GATCCACCTGGAGACACCTTCCGGCTGTACCAGGCCTCCACCAGGAAAGCTCCCATGATAACCACAATTATGGCAGCCAGACCCAGTCGTATGAAGTTACCCAGGGTGTAGTTGCTCGATGTGGTATCTGGGGGAACTGAAAGAGAGAAGGGTCTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102611572 157 - 106955855 GATCCACCTGGAGACAACTTCCGGCTGTACCAGGCCTCCATCAGGAAAGCTCCCATGATAACCACAATTATGGCAGCCAGACCCAGTTGTATGAAGTTACTCAGGGTGTAGTTGCTCGATGTGGTACCTGGGGGAACTGAAAGAGAGAAGGGGCTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59900398 157 +  64156825 GATCCACCCGGAGACACCTTTCGGCTGTGCCAGGCCTCCACCAGGAAAGCTCCCATGATAATCAAAATTATGGCAGCCAGACCCAGTCGTATGAAGTTACCCAGGGTGTAGTTGCTTGACGTGGTACCTGGGGGAACTGAAAGAGAGAAGGGGATCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54917860 157 +  59248254 GATCCACCCGGAGACACCTTTCGGCTGTGCCAGGCCTCCACCAGGAAAGCTCCCATGATAATCAAAATTATGGCAGCCAGACCCAGTCGTATGAAGTTACCCAGGGTGTAGTTGCTTGACGTGGTACCTGGGGGAACTGAAAGAGAGAAGGGGCTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47036444 157 +  51301725 GATCCACCTGGAGACACCTTTCTGCTGTGCCAGGCCTCCACCAGGAAAGCTCCCATGATAACCAAAATCATGGCAGCCAGACCCAGTCGTATGAAGTTACCCAGGGTGTAGTTGCTTGACGTGGTACCTGGGGGAACTGAAAGAGAGAAGGGGCTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46749598 157 +  50890351 GATCCACCTGGAGACACCTTTCGGCTGTGCCAGGCCTCCACCAGGAAAGCTCCCATGATAATCAAAATTATGGCAGCCAGACCCAGTCGTATGAAGTTACCCAGGGTGTAGTTGCTTGACGTGGTACCTGGGGGAACTGAAAGTGAGAAGGGGCTCA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19530262 157 - 122678785 GATCCTTGTGGAGAATCCTCCTGGCTATACCAGGCTTCAGCCAGCAAAATCCCAGTGATAATCAGAAACATGGTAATGAGACACAGCGGGATGAGGTTAACCTTGGTGTAATCCCCCAATGTGGCACCTGGGAAAACTGAAAGAGAGAATGAGATCA
i canFam3.chr1              I 103 C 0
e calJac3.chr22              45325099 2055 +  49145316 I

a score=256651.000000
s hg38.chr19_GL949751v2_alt     44548 78 +   1002683 GCACTGACCCTCAGAGGGTATCCCTCCTTCTCAAATGGCCCCACCAAATCTGACTATCAT-CACCCACTTAATGTTTTC
s panTro4.chr19              58978666 78 +  63644993 GCACTGACCCTCAGAGGGTATCCCTCCTTCTCAAATGGCCCCACCAAATCTGACTGTCAT-CACCCACTTAATGTTTTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55849721 78 +  60714840 GCACTGACCCTCAGAGGGTATCCCTCCTTCTCAAATGGCCCCACCAAATCTGACTATCAT-CACCCACTTAATGTTTTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102611729 77 - 106955855 GCACTGACCCTCAGA-GGTATCCCTCCTTCTCAAATGGCCCCGCCAAATCTGACTCTCAT-CACCCACTTAATGTTTTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59900555 78 +  64156825 GCACTGACCCTCAGAGTGTATCCCTCCTTCTCAAATGGCCCCGTCAAATCTGACTGTCAT-CACCCACTTAATGttttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54918017 78 +  59248254 GCACTGACCCTCAGAGTGTATCCCTCCTTCTCAAATGGCCCCGTCAAATCTGACTGTCAT-CACCCACTTAATGTTTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47036601 78 +  51301725 GCATTGACCCTCAGAGGGTATCCCTCCTTCTCAAATGGCCCCGTCAAATCTGACTGTCAT-CACCCActtaatgttttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46749755 78 +  50890351 GCACTGACCCTCAGAGGGTATCCCTCCTTCTCAAATGGCCCCGTCAAATCTGACTGTCAT-CACCCACTTAATGTTTTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45327154 78 +  49145316 gCACTGACCCTCAGAGCGTATCCCTCCTTCTCAAACAGTCCCGCCAAATCTCTCTCGCAT-CAGCCACTTCATGTCTTC
i calJac3.chr22             I 2055 C 0
s canFam3.chr1               19530419 67 - 122678785 TCACTG-----------GTATCCCTTCTTCTCAAATAGGTCTACCGAATGTGACTCTCACACACCCACTT-GTGTTTCC
i canFam3.chr1              C 0 I 1673

a score=849774.000000
s hg38.chr19_GL949751v2_alt     44626 300 +   1002683 -------------------------GG----ttttttggtttttttttttgagacggagttttactcttgttgaccaggctggagtgcagtggtgtaatctcagctcaccacaacctctgcctcccaggttcaagc---ctccctgcctcagcctcccaagtagctgggattacaggcatgtgccaccatgcccggctaa--ttttatatttttagtagagacggggtttcgccatgttggccaggctggtcttgaactcccgacctcaggtgacccgcccacctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggcc
s panTro4.chr19              58978744 300 +  63644993 -------------------------GG----ttttttggtttttttttttgagacggagttttactcttgttgaccaggctggagtgcagtggtgtaatctcagctcaccacaacctctgcctcccgggttcaagc---ctccctgcctcagcctcccaagtagctgggattacaggcatgtgccaccatgcccagctaa--ttttatatttttagtagagacggggtttcgccatgttggccaggctggtcttgaactcccgacctcaggtgacccgcccacctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcccggcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55849799 306 +  60714840 -------------------------GGGGttttttttgtgttttttttttgagacggagttttgctcttgttgaccaggctggagtgcagtggtgtaatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcctaagtagctgggattacaggcgtgtgccaccatgcccggctaa--ttttatatttttagtagagacggggtttcgccatgttggtcaggctggtcttgaactcccgacctcaggtgacccgcccacctcagcctcccaaagtgctgggattaca-gtgtaagccacagcgcctcgcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102611806 303 - 106955855 -------------------------GG----Gtttttttgttttgtttttgagatggagttttgctcttgttgcccaggctggagtgcagtggtgcaatctcggctcaccacaacctctgcctccccggttcaagcaattctcctgcctcggcctcccaagtagctgggattatgggcatgtgccaccatgcccggctaa--ttttttatttttagtagagatggggttttgccatgttggtcaggctggtctcgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgggagccactgctccttgcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59900633 299 +  64156825 -------------------------gg----ttttgggg----tttttttgagacagaattttgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcaccgcaacctctgcctcccgggttcaagcaattctcctgcttcaggctcccaagtagctgggattacaggcatgtgccaccaagcccagctaa--ttttatatttttagtagagacggggttttgccatgttggtcaggctggtctcaaactcccaacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatacccggcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54918095 299 +  59248254 -------------------------GG----TTTTGGGG----tttttttgagacggaattttgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcaccgcaacctctgcctcccgggttcaagcaattctcctgcttcagcctcccaagtagctgggattacaggcatgtgccaccaagcccagctaa--ttttatatttttagtagagacggggttttgccatgttggtcaggctggtctcaaactcccaacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatacccggcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47036679 299 +  51301725 -------------------------gg----ttttgggg----tttttttgagacggagttttgctcttgttgcccaggctggagtgcaatggtacaatctcagctcactgcaacctctgcctcccgggttcaagcaattttcctgcttcagcctcccaagtagctgggattacaggcatgtgccaccaagtccagctaa--ttttatatttttagtagagacagggttttgccatgttggtcaggctggtctcaaactcccaacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatacccggcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46749833 300 +  50890351 -------------------------GG----TTTTGGGG---ttttttttgagacggagttttgctcttgttgcccaggctggagtgcaatggtgcaatctcagctcaccgcaacctctgcctcccggattcaagcaattctcctgcttcagcctcccaagtagctgggattataggcatgtgccaccaagcccagttaa--ttttatatttttagtagagacggggttttgccatgttggtcagactggtctcaaactcccaacctcagttgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacctggcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45327232 328 +  49145316 TAGCCAGCAGTCCACTGTACTTTAAAG----TGtttttttttttttttttgagacggagtttcgctcttgttacccaggctggagtgcaatggcgcgatctcggctcaccgcaacctctgcctcctgggttcaggcaattctcctgcctcagcctcccgagtagctgggattacaggcacgtgccaccatgcccagctaagtttttgtatttttagtagagatggggtttcaccatgttgaccaggatggtctcgatctcttgacctc--gtgatccacccgcctcggcctcccaaagtgctgggattattggcgtgagccaccgcgcccggcc
i calJac3.chr22             C 0 T 345
e canFam3.chr1               19530486 1673 - 122678785 I

a score=96224.000000
s hg38.chr19_GL949751v2_alt     44926 33 +   1002683 ACCCACTTAATGTTTTCTAGCCAGTAGTCCACT
s panTro4.chr19              58979044 33 +  63644993 ACCCACTTAATGTTTTCTAGCCAGTAGTCCACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55850105 33 +  60714840 ACCTACTTAATGTTTTCTAGCCGGTAGTCCACT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102612109 33 - 106955855 ACCCACTTAATGTGTTCTAGCCGATAGTCCACT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59900932 33 +  64156825 ACCCACTTAATGTTTTCTAGCCAGTCGTCCACT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54918394 33 +  59248254 ACCCACTTAATGTTTTCTAGCCAGTCGTCCACT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47036978 33 +  51301725 accCACTTAATGTTTTCTAGCCAGTCGTCCACT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46750133 33 +  50890351 ACCCACTTAATGTTTTCTAGCCACTCGTCCACT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45327215 33 +  49145316 AGCCACTTCATGTCTTCTAGCCAGCAGTCCACT
i calJac3.chr22             T 345 I 312
e canFam3.chr1               19530486 1673 - 122678785 I

a score=1562945.000000
s hg38.chr19_GL949751v2_alt     44959 595 +   1002683 GTACTTTAAAGTTTTAATT-----------------GAACttttt-------ttttttcttgagatcaagttttgctcttgttgcccagactggagtgtaatggcacaatctcagctcactacaacctctgcctcccgggttcaagtgattctcctgtctcagcctcccaagcagctgagattatgagcatgtgccaccacacccggctaattt-tgtatttttagtagaga-cggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgttgggattataggcataaaccaccatgcctggccATAAT-TGAGCTCTTTA-AAGTTTTAATCCCTGAAAACAAAAGATGGAATCt---ttgttgttgtt--tttgagacgacgtctcactctgttgctcaggctggagtgcagcgacgcagtctcggttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgaatagctaggattacaggcacctaccaccacacccggctaattttt-----------------gtatttttaatagagatgggttttcgccatgttggccaaactggtttcgaactcctgg
s panTro4.chr19              58979077 594 +  63644993 GTACTTTAAAGTTTTAATT-----------------CAACttttt-------ttttt-cttgagatcaagttttgctcttgttgcccagattggagtgtaatggcacaatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgtctcagcctcccaagcagctgagattatgagcatgtgccaccacacccggctaattt-tgtatttttagtagaga-cggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgttgggattataggcataaaccaccatgcctggccATAAT-TGAGCTCTTTA-AAGTTTTAATCCCTGAAAACAAAAGATGGAATCt---ttgttgttgtt--tttgagacgacgtctcactctgttgctcaggctggagtgcagcgacacagtctcggttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgaatagctaggattacaggcacctaccaccacacccggctaattttt-----------------gtatttttaatagagatgggttttcgccatgttggccaaactggtttcaaactcctgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55850138 594 +  60714840 GTGCTTTTATGTTTTAATT-----------------GAACttttt-------ttttt-cttcagatagagtttcgcttttgttgcccaggctggagtgcaatggcacaatctcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcccgagcagctaagattacgagcatgcgccaccacacctggctaattt-tgtatttttagtagaga-tggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtaatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcctggccATAAT-TGAACTCTTTA-AAGTTATAATCCCTGAAAACAACAGATGGAATCt---ttgttgttgtt--tttgagacaaagtctcgctctgtcgctcaggctggagtgcagagacaaaatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgaatagctgggattacaggcacctgccaccacacccggctaattttt-----------------gtatttttagtagagatgggttttcgccatgttggccaaactggtttcaaactcctgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102612142 591 - 106955855 GTACTTTTATGTTTTAATT-----------------GAACttttt-------ttttt-cttgagatggagttttgcttttgttgcccagactggagtgcaatggcgcaatctcggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcctgagcagctaagattatgagcatgcgccaccacacctggctaattt-tgtatttttagtagaga-cggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccATAAT-TGAACTCTTTA-AAGTTTTAATCCCTGAAAACAACAGATGGAATCt------ttgttgtt--tttgagatggagtctcgctctgtcacccaggctggagtgcagcgacacaatctcggctcactgcaccctccacctcctgggttcgagtgattctcctgcctcagcctcccgaatagctgggactacaggcacctgccatcacacccggctaattttt-----------------gtattttcagtagagatgggttttcgccatgttggccaaactggtttcaaactcctgG
i nomLeu3.chr10             C 0 M 1602
s rheMac3.chr19              59900965 580 +  64156825 GTACTTTAAAGTTTTAATT-----------------GAACtttgt-------ttttt-cttgagatggagttttgctcttgttgcccagacta------ggtggcacaatctcagctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcaacctcccgagtagctgggattacaggcatgagccaccatgcccgactaatttctgtatttttagtagagaggggggtttctccatgttggttgggctggtcttgaactcctgacctcaggtgatctgcccaccctggcctcccaaagt-------------gcatgagccaccatgcccagccATAAT-TGAACTCTTTA-AAATTTTAATCCCTGAAAACAAAAGATGGAATCtttgttgttgttgtt--tttgagaccaagtctcgctctgttgctcaggctggagtgcagtggcacaatcttggcttattgcaacctccacctcccgggttcaagcaattctcctgcctcagcctcctgaatagctgggattacaggcacctgtcaccacgcctggctaattttg-----------------gtatttttagtagagatgggttttcttcatgttggccaaactgatttcgaactcctgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54918427 586 +  59248254 GTACTTTAAAGTTTTAATT-----------------GAACtttgt-------ttttt-cttgagatggagttttgctcttgttgcccagactagagtgcggtggcacaatctcagctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcaacctcccgagtagctgggattacaggcataagccaccatgcccgactaatttctgtatttttagtagagaggggggtttctccatgttggttgggctggtcttgaactcctgacctcaggtgatctgcccaccctggcctcccaaagt-------------gcatgagccaccatgcccagccATAAT-TGAACTCTTTA-AAATTTTAATCCCTGAAAACAAAAGATGGAATCtttgttgttgttgtt--tttgagaccaagtctcgctctgttgctcaggctggagtgcagtggcacaatcttggcttactgcaacctccacctcccgggttcaagcaattctcctgcctcagcctcctgaatagctgggattacaggcacctgtcaccacgcctggctaattttg-----------------gtatttttagtagagatgggttttcttcatgttggccaaactgatttcgaactcctgg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47037011 586 +  51301725 GTACTTTAAAGTTTTAAtt-----------------gaactttgt-------ttttt-gttgagatggagttttgctcttgttgcctagactagagtgtggtggcacaatctcagctcactgcaacctctgcctcccgggttcaagcgattatcctgcctcaacctcccgagtagctgggattacaggcatgagccaccatgcccgactaatttctgtatttttagtagagaggggggtttctccatgttggttgggctggtcttgaactcctgacctcaggtgatctgcccaccctggcctcccaaagt-------------gcatgaggcaccatgcccagccataat-tgaactcttta-aaattttaatccctGAAAACAAAAGATGgaatctttgttgttgttgtt--tttgagaccaagtctcgctctgttgctcaggctggagtgcagtggcacaatcttggcttactgcaacctccacctcccgggttcaagcaattctcctgcctcagcctctcgaatagctgggattacaggcatctgtcaccatgtccggctaattttg-----------------gtatttttagtagagatgggttttcttcatgttggccaaactgatttcgaactcctgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46750166 582 +  50890351 GTACTTTAAAGTTTTAATT-----------------GAACtttgt-------ttttt-cttgagatggagttttgctcttgttgcccagactagagtgcagtggcacaatctcagctcactgcaacctctggctcccgggttcaagcaattctcctgcctcaacctcccgagtagctgggattacaggcatgagccaccatgcccggctaattt-tgtatttttagtagagaggggggtttctccatgttggttgggctggtcttgaactcctgacctcaggtgatctgcccaccctggcctcccaaagt-------------gcatgagccaccgtgcccagccATAAT-TGAACTCTTTA-AAATTTTAATCCCTGAAAACAAAAGATGGAATCtttgttgttgttgtt--tttgagaccaagtctcgctctgttgctcaggctggagtgcagtggcacaatcttggcttactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgaatagctgggattacaggcacctgtcaccacgcccggctaattttg-----------------atatttttagtagagatgggttttcttcatgttggccaaactgatttcgaa---ctgg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45327560 626 +  49145316 GAACTTTAAAGTTTTAATCCCTGAAAACAAGAGACGGAATCttttgttgttgttgtt-gttgagatggagtctccctc-tgttgcccaggctggagtgcagtggcacaatcctggctcactgcaacctccacctcccaggttcaagcaatgctcctgcctcagcctcctaagtggctgagattacaaatgcccgccagcatgcctggctgatttttgtacttttagtagaga-tgacttttcaccatgttggccacactaatctcgaacttctggcctcaggtgacccagcagcctcggcctcccaaagtgctgtgattacgggcatgagccaccgcacctggccAAAATATGGAATCTTAATGAGTTGTAGT----------------GGGAGTTCCttttctttttatttgtctgagacagagtcttgctctgtcacccaggctggagtgcagtggcgtgatctcagttcactgcaacctctgcctcccaggttcaagtgattcccctgcctcagcttcccgagtagctggaactacaggtacacaccaccacgcctggctagttttgtgtgtgtgtgtgtgtgtgtatttttagtagaggcggggttttaccatattggccaggctggtcttgaactcctga
i calJac3.chr22             I 312 C 0
e canFam3.chr1               19530486 1673 - 122678785 I

a score=98551.000000
s hg38.chr19_GL949751v2_alt     45554 43 +   1002683 cctcaagtgattcgcctgcctcggcctcccaaggtgctgggat
s panTro4.chr19              58979671 43 +  63644993 cctcaagtgattcgcctgcctcggcctcccaaggtgctgggat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55850732 43 +  60714840 cctcaagtgattcgcctgcctcggcctcccaaagtgctgggat
i ponAbe2.chr19             C 0 I 5965
s rheMac3.chr19              59901545 43 +  64156825 ccttaagtgattcgccggccttggcctcccaaagtgctgggat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919013 43 +  59248254 ccttaagtgattcgccggccttggcctcccaaagtgctgggat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47037597 43 +  51301725 cctcaagtgattcgtctgcctcggcctcccaaagtgctgggat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46750748 43 +  50890351 cctcaaatgattcacctgcctcagcctcccaaagtgctgggat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45328186 41 +  49145316 cctca--tgatctgcccgcctcggcctcccaaagtgctgggat
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19530486 1673 - 122678785 I
e nomLeu3.chr10             102612733 1602 - 106955855 M

a score=57794.000000
s hg38.chr19_GL949751v2_alt     45597 45 +   1002683 tacaggcctgagccaccgcgcccggccAAGATATGCAATCCTAAT
s panTro4.chr19              58979714 45 +  63644993 gacaggcatgagccaccgcgcccagccAAGATATGCAATCCTACT
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59901588 45 +  64156825 gacaggcatgagccaccgcacctggccAAAACATGGAATCCTAAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919056 45 +  59248254 gacaggcatgagccaccgcacctggccAAAACATGGAATCCTAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47037640 45 +  51301725 gacaggcatgagctaccgcacctggccaaaacatGGAATCCTAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46750791 45 +  50890351 gacaggcatgagccaccgcacctggccAAAACATGGAATCCTAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45328227 27 +  49145316 tataggtgtgagccactgtgcctggcT------------------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19530486 1673 - 122678785 I
e ponAbe2.chr19              55850775 5965 +  60714840 I
e nomLeu3.chr10             102612733 1602 - 106955855 M

a score=588117.000000
s hg38.chr19_GL949751v2_alt     45642 295 +   1002683 GAGTTGTAATGGGAG-TTCCTTTATCTTCCTTCCTTGATATTCACTCCACCTTAGCTCTCTTCCTTCGTTTATTTGCTCTTTATCCCATTTCCACCTTCCCACATTGCC-TTTTCTCCTCCCGCATCCTTATGTTAAGGAATAGTCTT-GGGGCAGCACATGAGACGGAAGGAGCTCTACAGAGCCCCGAA----TTCCGTGGCTGGATCAG-------CATCCTCGCAGCCCACACTGCTGTGCA-GCAGTGCACCTGAGAAAGTTTGAGTT--GAggccgggcacagtagc--tcacgcctgtaatcccagc
s panTro4.chr19              58979759 295 +  63644993 GAGTTGTAATCGGAG-TTCCTTTATCTTCCTTCCTTGATATTCACTCCACCTTAGCTCTCTTCCTTCATTTATTTGCTCTTTATCCCATTTCCACCTTCCCACATTGCC-TTTTCTCCTCCCGCATCCTTATGTTAAGGAATAGTCTT-GGGGCAGTACATGAGACGGAAGGAGTTCTACAGAGCCCCGAA----TTCCGTGGCTGGATCAG-------CATCCTCGCAGCACACACTGCTGTGCA-GCAGTGCACCTGAGAAAGTTTGAGTT--GAggccgggcacagtagc--tcacacctgtaatcccagc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59901633 297 +  64156825 GAGTTGTAGTGGGAG-TTCCTTTATCTTCCTTCCTTGACATTCACTCCACCTTAGCTCTCTTCCTTCGTTTATTTGCTCTTTATCCCATTTCCACCTTCCCACATTGCC-TTTTCTCCTTCCCCATCCTTATATTAAGGAATAGTCTTGGGGGCAGCACATGAGACAGAAGGAGCTCCACAGAGCCCCGAA----TTCCGTGGCTGGATCAG-------CATCCTTGCAGCACACACTGCTGTGCAGGCAGAGCACTTGAGAAAGTTTGAGTT--GAggccgggcacagtggc--tcacacctgtaatcccagc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919101 297 +  59248254 GAGTTGTAGTGGGAG-TTCCTTTATCTTCCTTCCTTGACATTCACTCCACCTTAGCTCTCTTCCTTCGTTTATTTGCTCTTTATCCCATTTCCACCTTCCCACATTGCC-TTTTCTCCTTCCCCATCCTTATATTAAGGAATAGTCTTGGGGGCAGCACATGAGACAGAAGGAGCTCCACAGAGCCCCGAA----TTCCGTGGCTGGATCAG-------CATCCTTGCAGCACACACTGCTGTGCAGGCAGAGCACTTGAGAAAGTTTGAGTT--GAggccgggcacagtggc--tcacacctgtaatcccagc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47037685 297 +  51301725 GAGTTGTAGTGGGAG-TTCCTTTATCTTCCTTCCTTGACATTCACTCCACCTTAGCTCTCTTCCTTCGTTTATTTGCTCTTTATCCCATTTCCACCTTCCCACattgcc-ttttctccttccccatcCTTATATTAAGGAATAGTCTTGGGGGCAGCACATGAGACAGAAGGAGCTCCACAGAGCCCCGAA----TTCCGTGGCTGGATCAG-------CATCCTTGCAGCACACACTGCTGTGCAGGCAGAGCACTTGAGAAAGTTTgagtt--gaggccaggcacagtggc--tcacacctgtaatcccagc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46750836 297 +  50890351 GAGTTGTAGTGGGAG-TTCCTTTATCTTCCTTCCTTGACATTCACTCCACCTTAGCTCTCTTCCTTCGTTTATTTGCTCTTTATCCCATTTCCACCTTCCCACATTGCC-TTTTCTCCTTCCCCATCCTTATATTAAGGAATAGTCTTAGGGGCATCACGTGAGACGGAAGGAGCTCCACAGAGCCCTGAA----TTCCGTGGCTGGATCAG-------CATCCTTGCAGCACACACTGCTGTGCAGGCAGAGCACTTGAGAAAGTTTGAGTT--GAggccgggcacagtggc--tcacacctgtaatgccagt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45328254 289 +  49145316 ---------TGGGAG-TTCCTGTATCTTCCTTCCTTGATATTCTCTCCACCTTAGCTGTCTTCCTTCATTTATTTGCTCTTTGTCCTATTCGCACCTTCCCACACTCCCTTTTTTTCCTTCCCCATCCTTATATCAATGAATAGTCTCAGGAGCAGCACATGAGAGGGAAAGAGCTCCACAGGGCCCCGAA----TTCCGTGGCTGGGTCAG-------CATCCTCACAGCACACACTGCTGTGCAGGCAGAGCACTTGAGAAAGTTTGAGGT--GAggccgggcacagtggc--ccgcgcccgtaaccccagc
i calJac3.chr22             C 0 C 0
s canFam3.chr1              103183131 308 + 122678785 GAGTTGTAGTGGGGTCTTCCTTTGCCTTCTTCCCTCTGTGTTCTCTCTGCTTTATCTCTCTTCTTGTGTTTCTTTGCTCTTCATCTCATTTCCACCCTCCCACACTGCC-ATTTCCCCTTCTCCCTCCTTGTGGTAGGAATCAGGCTTAGGAGGAACCCCTACAACCCAAGTTGCTGCACAGAGCGCTGAAGTACCTCAGTGGCTGCGTCTGCTCCCCTCCTCCTGCCAAGACTTACTGCCG-----CCAGGGAGCTCAAGAAGACTCAAGCTTAGAGGCTGAGCATCAGGACCACCATGCATTTCATTTCAGC
i canFam3.chr1              T 1206 I 1686
e ponAbe2.chr19              55850775 5965 +  60714840 I
e nomLeu3.chr10             102612733 1602 - 106955855 M

a score=358693.000000
s hg38.chr19_GL949751v2_alt     45937 210 +   1002683 actgtgggaggctaaggtaggaggattgcttgaggccaggagtttgagagcagcctgggcaacatggcgaaaccccatgtctactaaaaatacaa------------aaaaattagccgggtgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgacctgggcctggggttg-gggggtggaggctgcagtgagctc
s panTro4.chr19              58980054 210 +  63644993 actgtgggaggctaaggtgggagaattgcttgaggccaggagttcgagagcagcctgggcaacatggcgaaaccccatgtctactaaaaatacaa------------aaaaattagccgggtgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgacctgggcctggggttg-gggggtggaggctgcagtgagctc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59901930 210 +  64156825 actgtgggaggctgaagtgggaggattgcttgaggccaggagttcgagagcagcccgggtaacatagcaaaaccccatgtctactaaaaatacaa------------aatacggagccaggtgtggtggcgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcacttgacccgggcctggggttg-ggagttggaggctgcagtgagccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919398 210 +  59248254 actgtgggaggctgaagtgggaggattgcttgaggccaggagttcgagagcagcctgggtaacatagcaaaaccccatgtctactaaaaatacaa------------aatacgtagccaggtgtggtggcgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcacttgacccgggcctggggttg-ggagttggaggctgcagtgagccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47037982 210 +  51301725 actgtgggaggctgaagtgggaggattgcttgaggccaggagttcaagagcagcctgggcaacatagcaaaaccccatgtctactaaaaatacaa------------aaaaagtagccgggtgtggtggcgggtgcctataatcccagctactccggaggctgaggcaggagaatcgcttgacctgggcctggggttg-gggggtggaggctgcagtgagccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46751133 210 +  50890351 actgtgggaggctgaagtgggaggattgcttgaggccaggagttcgagagcagcctgggcaacatagcaaaagcccatgtctactaaaaatacaa------------aaaaagtagccgggtgtggtggcgggtgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgacccgggcctggggttg-gggggtggaggctgcagtgagccc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45328543 223 +  49145316 actgtgagaggccgaggcgggaggattgcttgaggctgggagctcgagaccagcctgggcaacatggtgaaaacccatctctactaaaagtacaaaaaaaaaaaaacaaaaattaactgggagtagtggagggtgcgtgtaatcccagctacttgggaggctgagacaggagaatcgcttgacccaggcctggggggatgggggcaggggctgcagtgagccc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55850775 5965 +  60714840 I
e nomLeu3.chr10             102612733 1602 - 106955855 M

a score=136595.000000
s hg38.chr19_GL949751v2_alt     46147 119 +   1002683 agattgtgccactacactccagcttgggcgacagagtgagactccatctcaaagaaaacaaacaaacaaacaaaaccctagcctccagattttcagggaggctgatttgagtaataata
s panTro4.chr19              58980264 119 +  63644993 agattgtgccactacactccagcttgggcgacagagtgagactccatctcaaataaaacaaacaaacaaacaaaaccctagcctccagattttcagggaggctgatttgagtaataata
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59902140 112 +  64156825 agattgtgccactacactccagctcatgtgatagaatgagactccatctcaaagaa-------aaacaaacaaaaCCCTAGCCTGCAGattttcagggaggctgatttgagtaataata
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919608 112 +  59248254 agattgtgccactacactccagctcaggtgatagaatgagactccatctcaaagaa-------aaacaaacaaaaccctagcctgcagattttcagggaggctgatttgagtaataata
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47038192 116 +  51301725 agattgtgccactacactccagctcaggtgatagagtgagactccatctcaaagaa---aaacaaacaaacaaaaccctagcCTGCAGATTttcagggaggctgatttgagtaataata
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45328766 112 +  49145316 ggatcgtgccactgcactccagcttgggcatcacagtgagactccatctcaaagaa-------aagcaaacaaaaccctaacctccagattttcagggaggctggttggagtaataatg
i calJac3.chr22             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55850775 5965 +  60714840 I
e nomLeu3.chr10             102612733 1602 - 106955855 M
e chlSab2.chr6               46751343   0 +  50890351 C

a score=20907.000000
s hg38.chr19_GL949751v2_alt     46266 24 +   1002683 aaactctgattggccaggtgcagt
s panTro4.chr19              58980383 24 +  63644993 aaactctgattggccaggtgcagt
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59902252 24 +  64156825 aaactctgatgggccaggtgcggt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919720 24 +  59248254 aaactctgattggccaggtgcggt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47038308 24 +  51301725 aaactctgattggccaggcgcggt
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55850775 5965 +  60714840 I
e calJac3.chr22              45328878  0 +  49145316 C
e nomLeu3.chr10             102612733 1602 - 106955855 M
e chlSab2.chr6               46751343  0 +  50890351 C

a score=30516.000000
s hg38.chr19_GL949751v2_alt     46290 23 +   1002683 ggctcatgcctgtaatcccagca
s panTro4.chr19              58980407 23 +  63644993 ggctcatgcctgtaatcccagca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102614335 23 - 106955855 ggctcacgcctgtaatcccagca
i nomLeu3.chr10             M 1602 C 0
s rheMac3.chr19              59902276 23 +  64156825 ggctcacacctgtaatcccagca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919744 23 +  59248254 ggctcacacctgtaatcccagca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47038332 23 +  51301725 ggctcacgcctgtaatctcagca
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55850775 5965 +  60714840 I
e calJac3.chr22              45328878  0 +  49145316 C
e chlSab2.chr6               46751343  0 +  50890351 C

a score=322364.000000
s hg38.chr19_GL949751v2_alt     46313 192 +   1002683 ctttgggaggcccaagcgggcagatcacgaggtcaggagttcgagaccagcctggccaatatggtaaaaccccatctctactaaaaatac-----aaaaattagccaggcagggtggc--acacatatagtcccagctactcgggaggctgaggcagaagaatcgtttgaacctgggaggcagaggtttcattgagccg
s panTro4.chr19              58980430 192 +  63644993 ctttgggaggcccaagcaggcagatcacgaggtcaggagttcgagaccagcctggccaatatggtaaaaccccatctctactaaaaatac-----aaaaattagccaggcagggtggc--acgcacgtagtcccagctactcgggaggctgaggcagaagaatcgtttgaacctgggaggcagaggtttcattgagccg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55856740 192 +  60714840 ctttgggaggccgaggtgggcagatcacaaggtcaggagtttgagaccagcctggccaatatggtaaaaccccatctctactgaaaatac-----aaaaattagccaggcatggtggc--acgcacgtagtcccagctactcaggaggctgaggcagaagaatcgcttgaacctgggaggcagaggtttcagtgagcca
i ponAbe2.chr19             I 5965 C 0
s nomLeu3.chr10             102614358 199 - 106955855 ctttgggaggccgaggcgggcggatcacaaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaaaaattagcctggcgtggtggcgggtgcctgtagtctcagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgccatgagctg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59902299 192 +  64156825 ctttgggaggccgaggagggcagatcacgaggtcaggagtcggagaccagcctggccaatatgggaaaaccccagctctactaaaaacat-----aaaaattagctgggcatggtggc--gcgcatgtagtcccagctactcgggaggctgaggcagaagaatcgcttgaacctgggaggcagaggtgtcagtgagccg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919767 192 +  59248254 ctttgggaggctgaggagggcagatcacgaggtcaggagtcggagaccagcctggccaatatggtaaaaccccatctctactaaaaacat-----aaaaattagctgggcatggtggc--gcgcatgtagtcccagctactcgggaggctgaggcagaagaatcgcttgaacctgggaggcagaggtttcagtgagccg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47038355 192 +  51301725 ctttgggaggccgaggcgggcagatcacgaggtcaggagtcggagaccagtctggccaatatggtaaaaccccatctctactaaaaacat-----aaaaattagctgggcatggtggc--gcgcatgtagtcccagctactcgggaggctgaggcagaagaatcgcttgaacccgggaggcagtggtttcagtgagccg
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e calJac3.chr22              45328878   0 +  49145316 C
e chlSab2.chr6               46751343   0 +  50890351 C

a score=144535.000000
s hg38.chr19_GL949751v2_alt     46505 70 +   1002683 agatcgcgccactgcactccagcctgggcgacagagcaagactccgtctc----aaacaaaca-aacaaacaaa--a
s panTro4.chr19              58980622 70 +  63644993 agatcgcgccactgcactccagcctgggcgacagagcaagactccgtctc----aaacaaaca-aacaaacaaa--a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55856932 72 +  60714840 agatcacgccactgtactccagcctgggcgacagagcaagactccgtctc----aaacaaaca-aacaaacaaaATA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102614557 71 - 106955855 agatcataccactgcactccagcctgggcgacagagcgagactctgtctt----aaaaaaaaacaaaaaacaaa--a
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59902491 76 +  64156825 agatcacgccactgcactccagcctgggcgacagagtgagactccatctcaaaaaaaaaaaaa-aaaaaacaaaaca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54919959 73 +  59248254 agatcacgccactgcactccagcctgggcgacagagtgagactccatctc---aaaaaaaaaa-aaaaaacaaaaca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47038547 69 +  51301725 agatcacgccactgcactccagcctgggcgacagagtaagactccatctc-------aaaaaa-aagaaacaaaaca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46751343 72 +  50890351 agatcacgccactgcactccagcctgggcgacagagtaagacttcatctc----aaaaaaaaa-aaaaaacaaaaca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e calJac3.chr22              45328878  0 +  49145316 C

a score=3038111.000000
s hg38.chr19_GL949751v2_alt     46575 1085 +   1002683 aaactctggtctcccacttacctggctcaatgtgtattaaactcttttttgcaattcctctgtcttgatgaatgggcttcatccaggcacccggcaagaGCTGTAATGTAACTCATTACAGCAGTTACAATAG-ATGAAAAATAATTTACAGAGCTGAGGAAGCAGAGTGCTAGCACCCAGTAA-----------GGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCAA---TAAAAGACATGGGTAGACTTCGCATCCACGGCATAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGGATGAGATAAtttttttttttaatttgaaactgggtctcactatgttg-cccaggctggtctcaaa-ctcctgggctcaagcaattctccagcctcagcctcccaaagtgctgggattacaggcctgagccaccgcacatgactgAGAAAGAATTATTGAGAGTGAAATCACTAACACCAA------------GAAAAACCAAAACACgccatgcacagtggttcacacctgcaatcccagccctttgggaggccgaggtgagtggatcacctgaggccaggggttcaagaccagcctggtcaacatggtcagaaccccatctctact-aaaaatacaaaaattagccaggcgtggtggtgggcacatgtaatcccagctactcaagtggctgaggcaggagaattgcttaaactcgggaggcagaggttgcagtgagctgagatcgcaccactgcactccaccctgggcaacagagcgagactctgtctcaaaaacaaaatgaaacaaaacaaaacaaaaaaCCAAAACGCTAAGAGATGCAAAGACTGGTAGAAGGAATCTGGTGCTGGTAGATTCATAATTTTCAAAAACAGCCTAGAAATTTTCCAAGGATGTAGTATAACAAAAAGGCAAAGGAGggccgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacctgaggtcaggagttcaagaccag-cctggtcaacacggtgaaaccttcatcgctact-aaaaatag-aaaaattagccggatg-ggtggtgcaggcctgtaatcct
s panTro4.chr19              58980692 1083 +  63644993 aaactctggtctcccgcttacctggctcaatgtgtattaaactcttttttgcaattcctctgtcttgatgaatgggcttcatccaggcacccggcaagAGCTGTAATGTAACTCATTACAGCAGTTACAACAG-ATGAAAAATAATTTACAGAGCTGAGGAAGCAGAGTGCTAGCACCCAGTAA-----------GGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCAA---TAAAAGACACGGGTAGACATCGCATCCACGGCATAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGGATGAGATAAttttttttt--aatttgaaactgggtctcactatgttg-cccaggctggtctcaaa-ctcctgggctcaagcaattctccagcctcagcctcccaaagtgctgggattacaggcctgagccaccgcacATAACTGAGAAAGAATTATTGAGAGTGAAATCACTAACACCAA------------GAAAAACCAAAACACGTCATgcacagtggttcacacctgcaatcccagcactttgggaggccgaggtgagcggatcacctgaggccaggggttcaagaccagcctggtcaacatggtcagaaccccatctctact-aaaaatacaaaaattagccaggcgtggtggcgggcacctgtaatcccagctactcaagtggctgaggcaggagaattgcttaaactcgggaggcagaggttgcagtgagctgagatcgcaccactgcactccaccctgggcaacagagcgagactctgtctcaaaaacaaaatgaaacaaaacaaaacaaaaaaCCAAAACGCTAAGAGATGCAAAGAATGGTAGAAGGAATCTGGTGCTGGTGGATTCATAATTTTCAAAAACAGCCTAGAAATTTTCCAAGAATGTAGTACAACAAAAAGGCAAAGGAGggccgggcacggtggctcacacctgtaatcccagcacttcgggaggcctaggcaggcagatcacctgaggtcaggagttcaagaccag-cctggtcaacatggtgaaaccttcatcgctact-aaaaatag-aaaaataagccggatg-ggtggtgcaggcctgtaatcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55857004 1066 +  60714840 AAActctggtct---gcttacctggctcaatgtgtattaaactcttttttgcaattcctctgtcttgatgaatgggcttcatccgggcacccagcaaga--------ggaactcattacagcagttacaACAG-ATGAAAAATAATTTACAGAGCTGAGGAAGCAGAGTGCTAGCACCCAGTAA-----------GGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCAGTGCTAAAAGACATGGGTAGACATCG-ATCCATGGCACAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGGATGAGAttattttttttt-taatttgaaactgggtctcactatgttg-cccaggctggtttcaaa-ctcctgggctcaagcaattctccagcctcagcctcccgaagtgctgggattacaggcctgagtcaccgcgcATGACTGAGAAAGA---ATTGAGAGTGAAATCACTAACACCAA------------GAAAAACCAAAACATgccaggcacagtggttcacacctgcaatcccagcactttgggaggccgaggtcagtggatcacatgaggccaggggttcgagaccagcctggtcaacatggtgagaaccccgtctctact-aaaaatacaaacattagccacgcgtggtggcaggcacctgtaatcccagctactcaggtggctgaggcaggagaattgcttaaactcgggaggcagaggttgcagtgagctgagattgcaccactgcactccagcctgggcgacagagcgagactccgtctcaaaaacaaaatgaaacaaaacaaaa--------caaaaTGCTAAGCAATGCAAAGAATGGTGGAAGGAATCTGGTGCTGCTGGATTCATAATTTTCAAAAACAGCCTAGAAATTATCCAAGGATGTAGTACAAC-AAAAGGCAAAGGAGggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcaagaccagcccttgtcaacatggcaaaaccttcatcactactaaaaaatagaaaaaattaaccggatg-ggtggtgcaggcctgttatcct
i ponAbe2.chr19             C 0 T 6164
s nomLeu3.chr10             102614628 1069 - 106955855 aaactctggtctcccgcttacctggctcaatgtgtattaaactcctttctgcaattc--ctgtcttgatgaatgggcttcatccgggcagcaggcaaga--------ggaactcattACAGCAGTTTCAACAG-ATGCAAAATAATTTACAGAGCTGAGGAAGCAGAGTGCTAGCACCCAGTAA-----------GGCAGGAAACAAGATACTTTC---AGAATTCTAGCAGTCAGTGCTAAAAGACATGGGTAGACACCGAATCCATGGCACAGAAGCAGGAGGCTGTGCCAACACCATGTTCTGAGGATGAGATAAttctttttt--aatttgaaactgggtctcactatgttgccccaggctggtctcaaagctcctgggctcaagcaattctccatcctcagcctcccaaagtgctgggattacaggcctgagccactgcacATGACTGAGAAAGAATTATTGAGAGTGAAATCACTAACACCAA------------GAAAAACCAAAACACgccaggcacggtggttcacacctgcaatcccagcactttgggaagccaaggtgagcgcatcacctgaggccaggggttcgagaccagcctggtcaacatggtgacaaccccgtctctact-aaaaatacaaaaattagccaggcgtggtggcgggcacctgtactcccagcttctcaggtggctgaggcagaagaattgcttaaacttgggaggcagag------gtgagctgagatcgtaccactgcactccagcctgggcgacagagcaagagtccgtctcaaaaacaaaacgaaacaaaacaaaataaaaaaCAAAAACGCTAAGAGATGCAAAGAATGGTAGAAGGAATCTGGTGCTGGTGGATTCATAATTTTCAAAAACAGCCTAGAAATTATCCAAGGATGTAGTACAACAAAAAGGCAAAGGAGggccgggcgcagtggctcacgcctgtaatcccagcactttgggacgccgaggcgggcagatcacctgaggtcaggagttcaagaccag-cctggtcaacatggcgaaaacttcatcgctact-aaaaatag-aaaaattagccggatg-ggtggtgctggcctgtaatcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59902567 1077 +  64156825 aaactctggtctcccgcttaccggactcaatgtgtgttgaactccttcttgcaattcctctgtcctgatgaatgggcttcatccaggcagccagcaaga--------ggaactcgttacaacagttacaATAG-ATGAAAAATAATTT--AGAGTTGAGGAAGCAGAGTGCTAGCACCCAGTAAGGCAGAACTCTGGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCGGTGTTAAAAGACATGGGTAGACCTCGCATCCATGGCACAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGGATGAGAAAAttttttt----aatttgaaactgggtctcactatgttg-ccaaggctggtctcaaa-ctcctgggctcaagcaatcctccagcctcagccttccaaagtgctgggattacaggcctgagccaccacgcATGACTGAGAAAGAATTACTGAGAGTGAAATCATTAACACGAAGGAAAAAAAAAGAAAAAAGAAAAACACgccaggcacagtggttcacacctgcaatcccagcactttgggaggccaaggtgagcgaatcacctgaggccaggggttcgagaccagcctgggcaacgtggtgagaaccacatctctact-aaaaatacaaaaattagctgggcatg-------------gtaatcccagctactcaggaggctgaggcaggagaattgcttaaactcgggaggcagaggttgcagtgagctgagatcgcaccgctgcactccagcctgggcaacagagcgagactctgtctcaaaaacaaaatgaaacaaagcaaaa-----aaCCAAAACGCTAAGAGATGCAAAGAATGGTAGAAGGAATCTGGTGCTGGTGGATTCATAATTTTCAAAAACAGCCTAGAAATTATCCAAGGATGTAGTACAACAAAAAGGCAAAGGAGggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtagatca--tgatgtcaggagttcaagaccag-cctggtcaacatggcaaaacattcatctctact-aaaaatag-aaaaataagccagatg-ggtcgtgcaggcctgtaatcct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54920032 1077 +  59248254 aaactctggtctcccgcttaccggactcaatgtgtgttgaactccttcttgcaattcctctgtcctgatgaatgggcttcatccaggcagccagcaaga--------ggaactcgttacaacagttacaATAG-ATGAAAAATAATTT--AGAGTTGAGGAAGCAGAGTGCTAGCACCCAGTAAGGCAGAACTCTGGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCGGTGTTAAAAGACATGGGTAGACCTCGCATCCATGGCACAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGGATGAGATAAttttttt----aatttgaaactgggtctcactatgttg-ccaaggctggtctcaaa-ctcctgggctcaagcaatcctccagcctcagccttccaaagtgctgggattacaggcctgagccaccacacATGACTGAGAAAGAATTACTGAGAGTGAAATCATTAACACCaagaaaaaaaaaagaaaaaagaaaaaCACgccaggcacagtggttcacacctgcaatcccagcactttgggaggccaaggtgagcgaatcacctgaggccaggggttcgagaccagcctggtcaacgtggtgagaaccccatctctact-aaaaatacaaaaattagctgggcatg-------------gtaatcccagctactcaggaggctgaggcaggagaattgcttaaactcgggaggcagaggttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcgagactctgtctcaaaaacaaaatgaaacaaagcaaaa-----aaCCAAAACGCTAAGAGATGCAAAGAATGGTAGAAGGAATCTGGTGCTGGTGGATTCATAATTTTCAAAAACAGCCTAGAAATTATCCAAGGATGTAGTACAACAAAAAGGCAAAGGAGggccgggcacggtggctcacgcctgtaatcccagcactttgtgaggccgaggtgggtagatca--tgatgtcaggagttcaagaccag-cctggtcaacatggcaaaacattcatctctact-aaaaatag-aaaaataagccagatg-ggtcgtgcaggcctgtaatcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47038616 1075 +  51301725 acactcTGGTCTCCCGCTTACCTGACTCAATGTGTGTTGAACTCCTTCTTGCAATTCCTCTGTCCTGATGAATGGGCTTCATCCAGGCAGCCAGCAAGA--------GGAACTCGTTACAACAGTTACaacag-atgaaaaataatttacagagTTGAGGAAGTGGAGTGCTAGCACCCAGTAAGGCAGAACTCTGGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCAGTGTTAAAAGACATGGGTAGACCTCACATCCATGGCACAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGgatgagataatttttta----aatttgaaactgggtctcactatgttg-cccgggatggtctcaaa-ctcctgggctcaagcaatcctccagcctcagccttccacagtgctgggattacaggcctgagccaccacgcatgACTGAGAAAGAATTATTGAGAGTGAAATCATTAacaccaaggaaaaa-----aaaaaacaaaaacacgccaggcacagtggttcacacctgcaatcccagcactttgggaggccaaggtgagcgaatcacctgaggccaggggttcgagaccagcctggtcaacgtggtgagaaccccatctctactaaaaaatacaaaaattagccgggcatg-------------gtaatcccagctactcaggaggctgaggcaggagaattgcttaacctcgggaggcagaggttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcgagactctgtctcaaaaacaaaatgaaacaaagcaaaa-----aaccaaaacgCTAAGAGATGCAAAGAATGGTAGAAGGAACCTGGTGCTGGTGGattcataattttcaaaaacagcCTAGAAATTATCCAAGGATGTAGTACAACAAAAAGGCAAaggagggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtagatca--tgatgtcaggagttcaagaccag-cctggtcaacatggcaaaacattcatctctact-aaaaatag-aaaaataatccagatg-ggtggtgcaggcctgtaatcct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46751415 1072 +  50890351 aaactctggtctcccgcttaccggactcaatgtgtgttgaactccttcttgcaattcctctgtcctgatgaatggacttcatccaggcagccagcaaga--------ggaactcgttacaacagttacaACAG-ATGAAAAATAATTTACAGAGTTGAGGAAGCAGAGTGCTAGCACCCAGTAAGGCAGAACTCTGGCAGGAAACAAGATACTTTCAGAAGAATTCTAGCAGTCAGTGTTAAAAGACATGGGTAGACCTCACATCCATAGCACAGAAGCAGGAGGCTGTGCAAACACCATGTTCTGAGGATGAGATAAttttttt----aatttgaaactgggtctcactatgttg-cccaggctggtctcaaa-ctcctgggctcaagcaatcctccagcctcagccttccaaagtgctgagattacaggcctgagccaccacgcATGTCTGAGAAAGAATTACTGAGAGTGAAATCATTAACACCaagaaaa-------aaaaaaaaaaaaCACgccaggcacagtggttcacacctgcaatcccagcactttgggaggccaaggtgagcggatcacctgaggccaggggttcgagaccagcctggtcaacgtgatgagaaccctatctctact-aaaaatacaaaaattagccgggcatg-------------gtaatcccagctactcaggaggctgaggcaggagaattgcttaaactcgggaggtagaggttgcagtgagctgaggtcgcaccactgcactccagcctgggcaacagagtgagattctgtctcaaaaacaaaatgaaacaaagcaaaa-----aaCCAAAACGCTAAGAGATGCAAAGAATGGTAGAAGGAATCTGGTGCTGGTAGATTCATAATTTTCAAAAACAGCCTAGAAATTATCCAAGGATGTAGTACAACAAAAAGGCAAAGGAGggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtagatca--tgatatcaggagttcaagacaag-cctagtcaacatggcaaaacattcatctctact-aaaaatag-aaaaataagccagatg-ggtggtgcaggcctgtaatcct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45328878 1071 +  49145316 aaactctggtctcccacctacctggctcagtgtgtattaaactctttcttgcaatttctttgtcttgatgaatgggcttcatctgggcagccaccaaga--------ggaacccgttatgacagttacaTCAGCATGAAAAATAATTTATAGAGCTGAGGAAGCAGAGTGCTAGCATCCAGTAAGGCAGAACTCTTGCAGGAAACAAGATACTGTCGGAAGAATTATAGCAGTCAGTGCTGAAAGATGTGAGTAGACATCACATCCGTGGCACAGAAGCAGGAGGCTGTGCAAACGCCATGTTCTGAGGATGAGAGAAttgtttttta-aatttgaaactgggtctcactgtgttg-cccaggctggtctcaaa-ctcctgggctcaagcgatcctccagcctcagcctcccaaactgctgggattacaggcctgagccaccgtgcctgacTGGGAAAGAATTATTGAGAGTGAAATCACTAACTCCAA------------GAAAAAACAAAACCCAccaggttcggcggttcacatgtacaatgccagcactttgggaggctgaggtgggcagatcacttgaggccaggggttcgagatcagcctggtcaacatggtgagaaccccgtctctact-aaaaatacaaaaattagccaggcgtg---gtgggcgcctgtagtcccagctaatcaggtggctgcggcagg-gaatccctcgaactcaggaggcagaggttgcagtgagccgagattgcaccactgcattccagccagggtgacagagagagactccatctcacaaa-------aaacaaaGCTAAT-----AACCAAAACGCTAAGAGATGCAAAGACTGGTAGAAGGAATCTGGTGCTGGTGGATTCATAATTTTTAAGAACAGCCTAGAAATTATCCAAGTATCTAGTACAACAAAAAGGTAAAGGAGggcaggacgcagtggctcacgcctgtaaccccagcacttt--gaggccaaggcaggttgatca--taagatcaggagttcgaaaccag-cctgaccaacatggtgaaac-tccatctctact-aaaattac-aaaaattagccaggtgtggtggcgtgtgcctgtagtccc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I

a score=260751.000000
s hg38.chr19_GL949751v2_alt     47660 125 +   1002683 agctacttgggaggctgaggcaggagaatcacttgaacctggaaggtggaggttgcagtgagcgaagatcgcgccattgcactccatcct-ggcaacagagtgagactccatttcaaaaaaaaaaa
s panTro4.chr19              58981775 125 +  63644993 agctacttgggaggctgaggcaggagaatcacttgaacctggaaggtggaggttgcagtgagccaagatcgcaccattgcactccatcct-ggcaacagagtgagactccatttcaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102615697 125 - 106955855 agctactcgggaagctgaggcaggagaatcacttgaacctggaaggtggaggttgcagtgagccaagatcgcaccattgcactccatcct-ggcaacacagtgagactccatttcaaaaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59903644 124 +  64156825 agctactcgggaggttgaggtaagagaatcacttgaaccagg-aggtggaggtggcagtgagtcgagatcgcaccattgcactccatcct-ggcaacagagtgagacgccatttcaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54921109 124 +  59248254 agctactcgggaggttgaggtaagagaatcacttgaaccagg-aggtggaggtggcagtgagtcgagatcgcaccattgcactccatcct-ggcaacagagtgagacgccatttcaaaaaaaaaaa
i macFas5.chr19             C 0 I 905
s papAnu2.chr19              47039691 124 +  51301725 agctactcgggaggttgaggtaggagaatcacttgaaccagg-aggtggaggtggcagtgagtcgagaccgcaccattgcactccatcct-ggcaacagagtgagacgccatttcaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46752487 113 +  50890351 agctactcgggaggttgaggtaggagaatcacttgaaccagg-aggtggaggtggcagtaagccaagattgtgccactgcactccatcct-ggcaacagagtgagacgccatt-----------aa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45329949 126 +  49145316 agctacttgggaggctgaggcaggagaatcacctgaatccaggaggcagaggttgcagtgagccaagatcttgccattgcactccagcctgggtgacagagtgagactctgtctaaaaaaaaaaTT
i calJac3.chr22             C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55858070 6164 +  60714840 T

a score=19653.000000
s hg38.chr19_GL949751v2_alt     47785 54 +   1002683 aaaaa-aaaaaaGGCAAAGGAGTGGAAATTGT------GAAAGGGAGgtttttttgttgtt
s panTro4.chr19              58981900 48 +  63644993 aaaTA-------GGCAAAGGAGTGGAAATTGT------GAAAGGGAGGTTtttttgttgtt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102615822 56 - 106955855 aaaaaaaaaaaaGGCAAAGGAGTGGAAATTGTTAAGGGGAAAGGGAAGCttttt-----tt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59903768 34 +  64156825 --------aaaaGGCAAAGGAGTAGAAACTTT------AAAAGGGGAA-------------
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47039815 36 +  51301725 --------aaaaggcaaagcagtAGAAATTGT------AAAagggaag-----------tt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46752600 45 +  50890351 aaaaa-aaaaaaGGCAAAGGAGTAGAAATTGT------AAAAGGGAAC---------AGtt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45330075 39 +  49145316 ----------AATTTAAATAAGACAAAATTTC------------TAATTTTTTTTGTTGTT
i calJac3.chr22             C 0 T 9303
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55858070 6164 +  60714840 T
e macFas5.chr19              54921233 905 +  59248254 I

a score=10060.000000
s hg38.chr19_GL949751v2_alt     47839 32 +   1002683 ttgttgtttttgtttttgttttttgtttttt--g
s panTro4.chr19              58981948 32 +  63644993 tttttgtttttgtttttgttttttgtttttt--g
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102615878 32 - 106955855 tgttagtttttgtttgtttgtttgtttgttt--g
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59903802 17 +  64156825 ----------------tttgttttgtttttttt-
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47039851 24 +  51301725 tttttgttt-------tttgttttgtttttt---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46752645 30 +  50890351 tttttgttttt-tttgttttttttgtttttt---
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55858070 6164 +  60714840 T
e calJac3.chr22              45330114 9303 +  49145316 T
e macFas5.chr19              54921233 905 +  59248254 I

a score=265915.000000
s hg38.chr19_GL949751v2_alt     47871 151 +   1002683 tttttgagacagagtctcactctattgcccaggctggagtgcagtggcaagatcttggctcactgcaacctccgcctcccatgttcaagcaa-ttctcctgcctcagcctcccaagtagctgggtctacaggtgcatgccatcatacctggc
s panTro4.chr19              58981980 151 +  63644993 tttttgagacagagtctcactctattgcccaggctggagtgcagtggcaagatcttggctcactgcaacctccgcctcccatgttcaagcaa-ttctcctgcctcagcctcacaagtagctgggtctacaggtgcatgccatcatacctggc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102615910 151 - 106955855 tttttcagacggagtctcactctatcgcccaggctggagtgcagtggcaagatcttggctcactgcaacttccgcctcccatgttcaagcaa-ttctcctgcctcagcctcccaagtagctgggtctacaggtgcatgccaccatatctggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59903819 149 +  64156825 --tttgagacagagcgtcactttatcacccaggttggagtgcagtggcacgatcttggctcactgcaacctccgcctcccatgttcaagcaa-ttctcctgcctcagcctcccaaggagctgggcctacaggttcatcccgccatacctggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54922138 151 +  59248254 tttttgagacagagcgtcactctatcacccaggttggagtgcagtggcacgatcttggctcactgcaacctccgcctcccatgttcaagcaa-ttctcctgcctcagcctcccaaggagctgggcctacaggttcatcccgccatacctggc
i macFas5.chr19             I 905 C 0
s papAnu2.chr19              47039875 150 +  51301725 -tttggagacagagcgtcactctatcacccaggttggagtgcaatggcgcgatcttggctcactgcaaccttcgcctcccatgttcaagcaa-ttctcctgcctcagcctcccaaggagctgggcctacaggttcatcccgccatacctggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46752675 151 +  50890351 -ttttgagacagagcgtcactctatcacccaggttggagtgcagtggcgcgatcttggctcactgcaacctccgcctcccatgttcaagcaatttctcctgcctcagcctcccaaggagctgggcctacaggttcatcccgccatacctggc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e ponAbe2.chr19              55858070 6164 +  60714840 T
e calJac3.chr22              45330114 9303 +  49145316 T

a score=379650.000000
s hg38.chr19_GL949751v2_alt     48022 164 +   1002683 taattttttatttttagtagagacggggtttcactatgttggccaggctggtctcaaatccttgacctcagatgatccatccacctcggcctcccaaagtgctgggatgacaggcatgagccaccacgccaggccAGAAAGGGAAGA-TTTTGTTAAGAGCGATG
s panTro4.chr19              58982131 164 +  63644993 taattttttatttttagtagagatggggtttcactatgttggccaggctggtctcaaatccttgacctcagatgatccatccacctcggcctcccaaagtgctgggatgacaggcatgagccaccacgccaggccAGAAAGGGAAGA-TTTTGTTAAGAGCGATG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55851906 164 +  60714840 taattttttatttttagtagagacggagtttcaccatggtggccaggctggtctcgaatccttgacctcagatgatctgcccacctcggcctcccaaagtgctgggatgacaggcatgagccactgcgcctggccGGAAAGGGAAGA-TTTTTTTAAGAGCGATG
i ponAbe2.chr19             T 6164 C 0
s nomLeu3.chr10             102616061 164 - 106955855 taattttttatttttggtagagacggggtttcaccatgttggccaggctagtctcgaatccttgacctcagatgatccgcccacctcggcctcccaaagtgctgggatgacaggcatgagccactgtgcccggccAGAAAGGGAAGA-TTTTTTTATGAGCGATG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59903968 164 +  64156825 tgattttttatttttagtagagacggggtttcaccatgttggccaggctggtctcgaattcttgacctcaggtgatccgcctgcctcggcctcccaaagcaccgggattacaggcgtgagccaccgcgccgggccAGAAAGGGAAGA-TATTTTTAAGAGCGATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54922289 164 +  59248254 taattttttatttttagtagagacggggtttcaccatgttggccaggctggtctcgaattcttgacctcaggtgatccgcctgcctcggcctcccaaagcaccgggattacaggcgtgagccaccgcgccgggccAGAAAGGGAAGA-TTTTTTTAAGAGCGATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040025 165 +  51301725 taattttttacttttagtagagacggggtttcaccatgttggccaggctggtctcgaattctcgacctcaggtgatccgcctgcctcggcctcccaaagcaccgggattacaggcgtgagccaccgcgcccggccacaaagggaagattttttttaagagcGATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46752826 164 +  50890351 taattttttatttttagtagagacagggtttcaccatgttggccaggctggtctggaattcttgacctcaggtgatctgcctgcctcggcctcccaaagcaccgggattacaggcgtgagccaccacgctcggccAGAAAGGGAAGA-TTTTTTAAAGAGCGATG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              103183439 1686 + 122678785 I
e calJac3.chr22              45330114 9303 +  49145316 T

a score=559368.000000
s hg38.chr19_GL949751v2_alt     48186 208 +   1002683 ATATTGTAAGTAATGAAGAAATGAGATTCACAGAAGAACAAAACAATCTCTGATTAAAAACAACACACACA-GTTCCTCAAAACCATACACGCCCTTACCTGTCACCAATATCTCAAGCTGATCACTGGGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACATGCAGCTGTAGTTCCCAG-------------CATCGCCGGCTGTCACGTCCACC
s panTro4.chr19              58982295 208 +  63644993 ATATTGCAAGTAATGAAGAAATGAGATTCACAGAAGAACAAAACAATCTCTGATTAAAAACAACACACACA-GTTCCTCAAAACCATACACGCCCTTACCTGTCACCAATATCTCAAGCTGATCACTGGGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACATGCAGCTGTAGTTCCCAG-------------CATCGCCGGCCGTCACGTCCACC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55852070 208 +  60714840 ATATTGCAAGTAATGAAGAAATGAGATTCACAGAAGAACAAAACAATCTCTGATTAAAAACAACACACACA-GTTCCTCAAAATCATACATGCCCTTACCTGTCACCAATATCTCAAGCTGATCACTGGGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACATGCAGCTGTAGTTCCCAG-------------CATCGCCAGCTGTCACGTCCTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102616225 208 - 106955855 ATATTGCGAGTCATGCAGAAATGAGATTCACAGAAGAACAAAACAATCTCTGATTAAAAACAACACACACA-GTTCCTCAAAATCATACATGCCCTTACCTGTCACCAACATCTCAAGCTGATCACTGGGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACATGCAGCTGTAGTTCCCAG-------------CATCGCCGGCTGTCACGTCCTCC
i nomLeu3.chr10             C 0 I 315
s rheMac3.chr19              59904132 208 +  64156825 ATATTGCGAGTAATGAGGAAATGAGATTCACAGAAGAACAAAACAACCTCTGATTAAAAACAACACACACA-GTTCTTCAAAATCATACACATCCTTACCTGTCACCAATATCTCAAGCCAATCACTGCGTTCTGAGGCCCAGAAGGGAGACTTTGCCTGGTAGTACACGCAGCTGTAGTTCCCAG-------------CGTCGCCGGCTGTCACGTCCTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54922453 208 +  59248254 ATATTGCGAGTAATGAGGAAATGAGATTCACAGAAGAACAAAACAACCTCTGATTAAAAACAACACACACA-GTTCTTCAAAATCATACACATCCTTACCTGTCACCAATATCTCAAGCCAATCACTGCGTTCTGAGGCCCAGAAGGGAGACTTTGCCTGGTAGTACACGCAGCTGTAGTTCCCAG-------------CGTCGCCGGCTGTCACGTCCTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040190 208 +  51301725 ATATTGCGAGTAATGAGGAAATAAGATTCACAGAAGAACAAAACAACCTCTgattaaaaacaacacacacc-GTTCTTCAAAATCATACACATCCTTACCTGTCACCAATATCTCAAGCCAATCACTGCGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACACGCAGCTGTAGTTCCCAG-------------CGTTGCCGGCTGTCACGTCCTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46752990 208 +  50890351 ATATTGCGAGTAATGAGGAAATGAGATTCACAGAAGAACAAAACAACCTCTGATTAAAAACAACACACACA-GTTCTTCAAAATCATACACATCCTTACCTGTCACCAATATCTCAAGCCAATCACTGTGTTCTGAGGCCCAGAAGGGAGACTTTGTCTGGTAGTACATGCAGCTGTAGTTCCCAG-------------CGTCGCCGGCTGTCACGTCCTCC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19532159 212 - 122678785 atAATGGACATGATGGAGAAATGAGAATCAGAGACTAGCAGAACACTCTCTGAT--------ATATATACATTTTTTTCCTTATCATGCAAAACCTTACCTGTTACCAAGATTTCGGG-TGGTTATTGGGTG-GGAGGTCAAGAAAGGAGCCTTTATCTGGTGGTAGACAACTCTGCAGTTTCCAGAAACGATTTCCAAAATCGTTGACTGTCACATTTTGA
i canFam3.chr1              I 1673 C 0
e calJac3.chr22              45330114 9303 +  49145316 T

a score=5348.000000
s hg38.chr19_GL949751v2_alt     48394 2 +   1002683 AG
s panTro4.chr19              58982503 2 +  63644993 AG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55852278 2 +  60714840 AG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59904340 2 +  64156825 AG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54922661 2 +  59248254 AG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040398 2 +  51301725 AG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46753198 2 +  50890351 AG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19532371 2 - 122678785 AG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45330114 9303 +  49145316 T
e nomLeu3.chr10             102616433 315 - 106955855 I

a score=1007578.000000
s hg38.chr19_GL949751v2_alt     48396 415 +   1002683 AGAGAAGTCTATCTCCTTCCCCGCTGGACTCTGCAGCTGGATGGGTGATGGCGTCCCTGCCTTCAGTAGAGCGAACATGATAGGCACAAACAATTGGTCTCGCTTCTGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACTGTACCCCTTTGGTAGGTTCGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGTTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCCACTCACCCCTGTTCTCCTGGCCGGAGGCTCTCGTGGAGTGTGGGAAATGAGAGATTCCTGATCTCTTCTACCTTCCTCCACTTCCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTACAAGACCTGTGTAAggcctggcatggtggctcacacctgtaatcccagcactttgggagg
s panTro4.chr19              58982505 415 +  63644993 AGAGAAGTCTATCTCCTTCCCCGCTGGACTCTGCAGCTGGATGGGAGATGGCGTCCCTGCCTTCAGTAGAGCGAACATGATAGGCACAAACAATTGGTCTCGCTTCTGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACTGTACCCCTTTGGTAGGTTCGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGCTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCCACTCACCCCTGTTCTCCTGGCCGGAGGCTCTCGTGGAGTGTGGGAAATGAGAGATTCCTGATCTCTTCTACCTTCCTCCACTTCCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTACAAGACCTGTATAAggcctggcatggtggctcacacctgtaatcccagcactttgggagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55852280 415 +  60714840 AGAGAAGTCTATCTCGTTCCCCGCTGGACTCCGCCGCTGGATGGGTGATGACGTCCCTGCCTTCAGTAGAGCAAACATGATAGGCACAAACAATTGGTCTTGCTTCTGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACTGTACCCCTTTGGTAGGTTTGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGCTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCCACTCACCCCTGTTCTCCTGGCTGGAGGCTCTCACGGAGTGTGGGAAATGAGAGATTCCTGATATCTCCTACCTTCCTCCACTTCCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTACAAGACCTGTATAAggccgggcatggtggctcacacctgtaatcccagcactttgggagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102616748 415 - 106955855 AGAGAAGTCTATCTCCTTCCCTTCTGGACTCCGCAGCTGGATGGGCGATGACGTCCCTGCCTTCAGTAGAGCGAACATGATAGGCACGAACAATTGGTCTCGCTTCTGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACTGTACCCCTTTGGTAGGTTTGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGACTCTGAGGTCCTGGGGAGAAGTCTGGAATCTCCCACTCACCCCTGTTCTCCTGGCCGGAGGCTCTCATGGAGTGTGGGAAATGAGAGATTCCTGATCTCTTCTACCTTCCTCCACTTTCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTACAAGACCTGTATAAggccgggcatggtggctcacacctataatcccagcactttgggagg
i nomLeu3.chr10             I 315 C 0
s rheMac3.chr19              59904342 405 +  64156825 GGAGAAGTCCGTCTCCTCCCCCGCTGGACTCCGCAGCTGGATGGCAGATGACGTCCCTGCCTTCAGTAGAGCAAACATGATAGGCAGAAACAGTTGGTCTGGCTGCCGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACCGTACCCCTTTGGTGGGTTTGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGCTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCTACTCGCCCCTGTTCTCCTGGCCGGAGGCTCTCATGGAGTGTGGGAAATCAGAGACTTCTGATCTCTTCCACCTTCCTCCACTTTCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTGCAAGACCTGTATAAggccgggcgtggtggctcacacctgtaatcccagca----------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54922663 405 +  59248254 GGAGAAGTCCGTCTCCTTCCCCGCTGGACTCCGCAGCTGGATGGCAGATGACGTACCTGCCTTCAGTAGAGCAAACATGATAGGCAGAAACAGTTGGTCTGGCTGCCGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACCGTACCCCTTTGGTGGGTTTGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGCTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCTACTCGCCCCTGTTCTCCTGGCCGGAGGCTCTCATGGAGTGTGGGAAATCAGAGACTTCTGATCTCTTCCACCTTCCTCCACTTTCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTGCAAGACCTGTATAAggccgggcgtggtggctcacacctgtaatcccagca----------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040400 405 +  51301725 GGTGAAGTCCGTCTCCTTCCCCGCTGGACTCCTCAGCTGGATGGCAGATGACGTCCCTGCCTTCAGTAGAGCAAACATGATAGGCAGAAACAGTTGGTTTGGCTGCCGGCACTGCAGAGTCACCCTTCCACCTGCGGTCACCGTACCCCTTTGGTGGGTTTGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGCTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCTACTCACCCCTGTTCTCCTGGCCAGAGGCTCTCATGGAGTGTGGGAAATCAGAGATTCCTGATCTCTTCCACCTTCCTCCACTTTCTACTCCGACCCCAGGACGGAGATTCTCCCTCCTGCAAGACCTGtataaggccgggcgtggtggctcacacctgtaatcccagca----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46753200 405 +  50890351 GAAGAAGTCCGTCTCCTTCCCCGCTGGACTCCGCAGCTGGATGGCAGATGATGTCCCTGCCTTCAGTAGAGCAAACATGATAGGCAGAAACAGCTGGTCCGGCTGCCAGCACTGCAGAGTCACCCTTCCACCTACGGTCACCGTACCCCTTTGGTAGGTTTGGAGGAAAGGTTTAGATAAATGTCCTGTAAGAGAAG-TCAGGCTCTGAGGTCCTGGGGAGAAGTCTGGAATCCCCTACTCGCCCCTGTTCTCCTGGCTGGAGGCTCTCATGGAGTGTGGGAAATCAGAGATTCCTGAACTCTTCCACCTTCCTCCACTTTCTACTCCGACCCCAGGACAGAGATTCTCCCTCCTGCAAGACCTGTATAAggccggccgtagtggctcacacctgtaatcccagca----------
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19532373 308 - 122678785 AGAAAAGTCTGCCCGTTTTCCTTCAGGTCTATGGTGCTGTACATGCTTTCTAGTACTTGTCTTCAGGAGAACCAACATCACATGTTCAAGCA--TATTCTGGCCTGTGGCACTACAGAGTCACATTTCTTCCCTGGGTCACCTTA-----------GGCTTGGAGAGAAGGTTTGGGCAAACTTCCTGTAAGAGAAGATCACTTCCTG----CAAGGGAAG----------------ATTAATTCCTGT---------------------------------AAGGGAAGATT-----------------------ACTTCCTG---------TAAGGTAAGGTCACTACCTGTAACAA------TGTCAGAGGTAGCCTGGTTTCTCTCCTTC----CCTTGGCCTTCTGGGAGG
i canFam3.chr1              C 0 I 3169
e calJac3.chr22              45330114 9303 +  49145316 T

a score=405849.000000
s hg38.chr19_GL949751v2_alt     48811 189 +   1002683 ccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctgcccaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcaggcacctgtaatcccagctgctcaggaggctggagcaggagaatcacttgagcccaggaggcggaagttgcagtgagccgaga
s panTro4.chr19              58982920 189 +  63644993 ccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctgcccaacatggcaaaaccctgtctctactaaaaatacaaaaattagccgggcgtggtggcaggcgcctgtaatcccagctgctaaggaggctggagcaggagaatcacttgagcccaggaggcggaagtggcagtgagccgaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55852695 189 +  60714840 ccgaggtgggcagatcacctgaggtcaggagttcgagaccagcctgcccaacatggcgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggcaggcacctgtaatcccagctgctcaggaggctggagcaggagaatcacttgagcccaagaggcggaagttgcagtgagccgaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617163 189 - 106955855 ccgaggtgggcggatcacctgaggtcaggagtttgacatcagcctgcccaacatggcaaaacgctgtctctactaaaaatacaaaaattagccgggcacgttggcaggcacctgtaatcccagctgctcaggaggctggagcaggagaatcacttgagcccaggaggcggaagttgcagtgagccgaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59904747 171 +  64156825 ------------------ctgaggacgggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcacacacctgtaatcccagctactcaggaggctgaggcaggagaatcagttgagcccaggaggcggaggtggcagtgagtcaaga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923068 171 +  59248254 ------------------ctgaggtcgggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcacacacctgtaatcccagctactcaggaggctgaggcaggagaatcagttgagcccaggaggcggaggttgcagtgagtcaaga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040805 171 +  51301725 ------------------ctgaggtcgggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaagtacaaaaattagccgggcatggtggcacacacctgtaatcccagctactcaggaggctgaggcaggagaatcagttgagcccaggaggcggaggttgcagtgagtcaaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46753605 171 +  50890351 ------------------ctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaagaattagccgggtgtggtggcacacacctgtaatcccagctactcaggaggctgaggcaggaaaatcagttgagcccaggaggcagaggttgcagtgagtcaaga
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19532681 3169 - 122678785 I
e calJac3.chr22              45330114 9303 +  49145316 T

a score=585205.000000
s hg38.chr19_GL949751v2_alt     49000 231 +   1002683 tggcaccactgcactctggcctgggcgacaaa----gTATAAAACCAACATATGCAATTTCGTTCCTG-TCTCTCTCCCTCTCCCATCACCCCCAACTACTCTGAAGGTGGGACCCCTTTTCTCCCTCTGTTCCTCCACTTCCTCCCTCATCCCCTGTCCCCCGTATGTCATTGGCAGGCACCCTGTCTGTACCTGTCACCAACAGTAGAAGGACGTCACTGCGCTGTGAAAGGAT
s panTro4.chr19              58983109 231 +  63644993 tggcaccactgcactctggcctgggcgacaga----gTATAAAACCAAGATATGCAATTTTGTTCCTG-TCTCTCTCCCTCTCCCGCCACCCCCAACTACTCTGGAGGTGGGACCCCTTTTCTCCCTCTGTTCCTTCACTTCCTCCCTCATCCCCTGTCCCCCGTATGTCATTGGCAGGCACCCTGTCTGTACCTGTCACCAACAGTAGAAGGACGTCACTGCGCTGTGAAAGGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55852884 232 +  60714840 tggcaccactgcactctggccagggcgacaga----gTATAAAACCAAGATATGCAATTTCGTTCCTGTTCTCTCTCCCTCTCCCGCCACCCCCAACTACTCTAGAGGTGGGACCCCTTTTCTTCCTCTGTTCCTCCTCTTCCTCCCTTATCCCCTGTCCCCCGTATGTCATTGGCAGGCACCCTGTCTGCACCTGTCACCAACAGTAGAAGGACGTCACTGTGCTGTGAAAGGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617352 231 - 106955855 tgacaccactgcactctggcctgggcgacaga----gTATAAAACCAAGATATGCAATTTCATTCCTG-TCTCTCTCCCTCTCCCGCCACCCCCAACTACTCTGGAGGTGGGACCCCTTTTCTCCCCCTGTTCCTCCACTTCCTCCCTCATCCCCTGTCCCCCATATGTCATTGGTAGGCACCCTGTCTGCACCTGTCACCAACAGTAGAAGGGCGTCACTGTGCTGTGAAAGGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59904918 230 +  64156825 tggcaccactgcactccggcctgggtgacaga----gTATAAAACCAAGGTATGCAATTTCATTCCTG-TCTCTCTCCCTCTCCCACCACCCCCAGCCACCCTGGAGGTGGGACCCCTTTTCTCCCTCTG-CCCTCTGCTTCCTCCCTCATCCCCTGCCCCCCGTATGTCATCGGCAGGCACCCTATCCACACCTGTCACCAACAGCAGAAGGACGTCACTGCGCTGTGAAGGGAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923239 230 +  59248254 tggcaccactgcactccggcctgggtgacaga----gTATAAAACCAAGGTATGCAATTTCATTCCTG-TCTCTCTCCCTCTCCCACCACCCCCAGCTACCCTGGAGGTGGGACCCCTTTtctccctctg-ccctctgcttcctccctcatcccctgcccCCCGTATGTCATCGGCAGGCACCCTATCCACACCTGTCACCAACAGCAGAAGGACGTCACTGCGCTGTGAAGGGAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47040976 230 +  51301725 tggcaccactgcactccggcctgggtgacaga----gtataaAACCAAGGTATGCAATTTCattcctg-tctctctccctctcccaccacccccagctaccctggaggtgggactccttttctccctctg-tccTCTGCTTCCTCCCTCATCCCCTGCCCCCCGCATGTCATCGGCAGGCACCCTATCCACACCTGTCACCAACAGCAGAAGGACGTCACTGCGCTGCGAAGGGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46753776 230 +  50890351 cggcaccactgctctccggcctgggtgacaga----gTATAAAACCAAGGTATGCAATTTCATTCCTG-TCTCTCTCCCTCTCCCACCACCCCCAGCTACCCTGGAGGTGGGACTCCTTTTCTCCCTCTG-TCCTCTGCTTCCTCCCTCATCCCCTGTCCCCCGTATGTCATCGGCAGGCACCCTATCCACACCTGTCACCAACAGCAGAAGGACGTCACTGCGCTGTGAAGGGAT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19535850 201 - 122678785 TGGTCTCACCCTCTTCTGACTCTGACTACAAGCCCTGGGTGAAGCCCAGCCAAGTCGTTCTGCTGCTG-TGTTTCTCCATCTCCCCTTGCCCCC--------------------------CCTCCCCGCCTCCCTGGGGTTCCTCCCCCA-CACCTGTCCC-----TGTTACTCCGAAGCACCC--TCCTCACCTGTCACCAGCAGGAGGAGGATGTCACTGGGCTGTGAACTTAT
i canFam3.chr1              I 3169 C 0
e calJac3.chr22              45330114 9303 +  49145316 T

a score=828846.000000
s hg38.chr19_GL949751v2_alt     49231 258 +   1002683 GTGGGGGGATGCTTTTCTGTAGTATTCACAGGTGTACTCTCCAGCATTTCTGACTTTTAGATTATTGAGGTGAAATTCGGCCGCGCCCTCTGTAGAATCAAGGGGCTTCG---GGGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACACCTCTGGCAGGAGTCCAACATCGCAGCGTCACATTGCTGTTGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
s panTro4.chr19              58983340 258 +  63644993 GTGGGGGGATGCTTTTCTGTAGTATTCACAGGTGTACTCTCCAGCATTTCTGACTTTTAGATTATTGAGGTGAAATTTGGCCGCACCCTCTGTAGAATCAAGGGGCTTCG---GGGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACACCTCTGGCAGGAGTCCAACATCGAAGCGTCACATTGCTGTTGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853116 258 +  60714840 GTGGGGGGACGCTTTTCTGTAGTATTCACAGGTGTACTCTCCAGCATTTCTGACTTTTAGATTATTGAGGTGAAATTCGGCCGCGCCCTGTGTAGAATCAAGGGGCTTCG---GGGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACACCTCTGGCAGGAGTCCGACATTGCAGTGTCACATTGCTGTTGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617583 258 - 106955855 GTGGGGGGATGCTTTTCTGTAGTATTCGCAGGTGTACTCTCCAGCATTTCTGACTTTTAGATTATTGAGGTGAAATTTGGCCGCGCCCTCTGTAGAATCAAGGGGCTTCG---GGGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACACCTCTGGCAGGAGTCCAACAACGCAGCGTCACATTGCTGTTGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59905148 258 +  64156825 GTGGGGGAACGCTTTTCTGTAGTATTCGCAGGTGTACTCTCCAGCATTTCTGATTTTTAGATTATTGAGGTGAAATTTGGCCGGGCCCTCTGTCGAATCAAGGGGCTTCG---GAGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACGCCTCTCGTAGGCGTCCAGCATCGCAGCGTCACATTGCTGTTGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923469 258 +  59248254 GTGGGGGAACGCTTTTCTGTAGTATTCGCAGGTGTACTCTCCAGCATTTCTGATTTTTAGATTATTGAGGTGAAATTCGGCCGGGCCCTCTGTCGAATCAAGGGGCTTCG---GAGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACGCCTCTCGTAGGCGTCCAGCATCGCAGCGTCACATTGCTGTTGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041206 258 +  51301725 GTGGGGGGACGCTTTTCTGTGGTATTCGCAGGTGTACTCGCCAGCATTTCTGATTTTTAGATTCTTGAGGTGAAATTCGGCCGGGCCCTCTGTTGAATCAAGGGGCTTCG---GAGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACGCCTCTGGTAGGCGTCCAGCATCGCAGCGTCACATTGCTGTCGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754006 258 +  50890351 GTGGGGGGACGCTTTTCTGTAGTATTCGCAGGTGTACTCTCCAGCATTTCTGATTTTTAGATTATTGAGGTGAAATTCGGCCGGGCCCTCTGTCGAATCAAGGGGCTTCG---GAGACTCCAGAATAATTCCTCCCTTCCTGAGAACAAAGCTCACGCCTCTGGTAGGCGTCCAGCATCGCAGCGTCACATTGCTGTCGGCAGGGACCACCGAGCTGGGCCAGGCACTGAGGGACGGCTTGGGCAGTGACCCTGGAAGGAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45320811 252 +  49145316 GTGGGAGACTGCTGTCTTGTAG---GCACAAAAGTACCTCCCAGCATCCTTGGGCTTCAAGTGCATGAAGGGGAATTCCGCTTCGCTTCCTGCCGAGCTCTG----TTCGCGCTGGAATGCAGAGTCGTTC--ACCTTGCGCAGCGTGAATGTCACATTCTGGGAAGGAGCCCGACACTTCAGGGTCACGTTGCTCTTGGCTTCAGCCACCGAGCTGGGCCAGGCGTGGAGGGAGGGCTTGGACAGTTTCTCTGGAAAGAA
i calJac3.chr22             T 9303 I 9366
s canFam3.chr1               19536051 258 - 122678785 TTGTGGGAGCTCTCGTCTATAGTATTCGCAGGTGTATGGTCCAGCGTTACGGGTTTTTAGGTCATTGAGGTGAAATTCAGCCACGCCCTCTGTGGAAGCCAGTGATTGCA---AGGACTCTAAGATACTTCTTCCCTTTCTGAGAACAAAGTTGACGTTCTTGGTGGAAGTCTGGCATTGCAGTGTCACATTGCTCTTGGAAAGCATCATCCAGCTGGGCCAGGCACTGAGGGAGGGCTTGGGAAGGGTCTCTGGAAGGAA
i canFam3.chr1              C 0 C 0

a score=130141.000000
s hg38.chr19_GL949751v2_alt     49489 53 +   1002683 GCAGAGCCTGATGCTGGACCCGATGC---CCTCCCCTGCTCTCAGGAAGCCCTTTT
s panTro4.chr19              58983598 53 +  63644993 GCAGAGCCTGATGCTGGACCCGATGC---CCTCCCCTGCTCTCAGGAAGCCCTTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853374 56 +  60714840 GCAGAGCCCGGTGCTGGACCCAACGCCCTCCTCCCCTGCTCTCAGGAAGCCCTTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617841 52 - 106955855 ACAGAGCCTGGTGCTGGACCCAATGC---CCTCCCCTGCTCTCAGG-AGCCCTTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59905406 53 +  64156825 GCAGAGCCCAGTGCTGGGCCTGACGC---CCTTCCCTGCTCTCAGAAAGCCCTTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923727 53 +  59248254 GCAGAGCCCAGTGCTGGGCCTGACGC---CCTTCCCTGCTCTCAGAAAGCCCTTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041464 53 +  51301725 GCAGAGCCCAGTGCTGGGCCTGACGC---CCTTCCCTGCTCTCAGAaagccctttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754264 53 +  50890351 GCAGAGCCCAGTCCTGGGCCTGACGC---CCTTCCCTGCTCTCAGAAAGCCCTTTT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19536309 53 - 122678785 GCAGATTTGGGGATGGGATTTGGTGC---CCTGAGCTGCTCTCAAGAAGTCTCTTT
i canFam3.chr1              C 0 I 1046
e calJac3.chr22              45321063 9366 +  49145316 I

a score=33584.000000
s hg38.chr19_GL949751v2_alt     49542 20 +   1002683 TAAAAt-----------------------ttattattattatt
s panTro4.chr19              58983651 26 +  63644993 TAAAAT-----------------ttattattattattattatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853430 17 +  60714840 TAAAAt--------------------------ttattattatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617893 43 - 106955855 TAAAATttattattatattattattattattattattattatt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59905459 20 +  64156825 TAAACT-----------------------ttattattattatt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923780 20 +  59248254 TAAACT-----------------------ttattattattatt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041517 20 +  51301725 taaaat-----------------------ttattattattatt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754317 20 +  50890351 TAAAAT-----------------------ttattattattatt
i chlSab2.chr6              C 0 I 32
e canFam3.chr1               19536362 1046 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=627.000000
s hg38.chr19_GL949751v2_alt     49562 1 +   1002683 a
s panTro4.chr19              58983677 1 +  63644993 a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853447 1 +  60714840 a
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617936 1 - 106955855 a
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59905479 1 +  64156825 a
i rheMac3.chr19             C 0 I 19
s macFas5.chr19              54923800 1 +  59248254 a
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47041537 1 +  51301725 t
i papAnu2.chr19             C 0 I 4
e canFam3.chr1               19536362 1046 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46754337 32 +  50890351 I

a score=6825.000000
s hg38.chr19_GL949751v2_alt     49563 5 +   1002683 ttatt
s panTro4.chr19              58983678 5 +  63644993 ttatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853448 5 +  60714840 ttatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617937 5 - 106955855 ttatt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54923802 5 +  59248254 ttatt
i macFas5.chr19             I 1 I 13
s papAnu2.chr19              47041542 5 +  51301725 ttatt
i papAnu2.chr19             I 4 I 10
e canFam3.chr1               19536362 1046 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46754337 32 +  50890351 I
e rheMac3.chr19              59905480 19 +  64156825 I

a score=6780.000000
s hg38.chr19_GL949751v2_alt     49568 13 +   1002683 ttgagatggagtc
s panTro4.chr19              58983683 13 +  63644993 atgagatggagtc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853453 13 +  60714840 ttgagatggagtc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102617942 13 - 106955855 TTGAGATGGAGTC
i nomLeu3.chr10             C 0 M 1546
e canFam3.chr1               19536362 1046 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46754337 32 +  50890351 I
e papAnu2.chr19              47041547 10 +  51301725 I
e macFas5.chr19              54923807 13 +  59248254 I
e rheMac3.chr19              59905480 19 +  64156825 I

a score=65497.000000
s hg38.chr19_GL949751v2_alt     49581 253 +   1002683 tccctctgttgcccaggctagagtgcagtggtgcaatctcagttcactgcaacctccgtctcctgggttaaagcaattctcctgcctcagcctcccaagtaggtgggattacaggcacgcaccaccacacccagctaattttgtattttagtagagacaaggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcgtga
s panTro4.chr19              58983696 253 +  63644993 tccctctgttgcccaggctagagtgcagtggcgcaatcttagttcactgcaacctccgtctcctgggttaaagcaattctcctgcctcagcctcccaagtaggtgggattacaggcacgcaccaccacacccagctaattttgtattttagtagagacaaggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggcctcccaaagtgctgagattacaggcatga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55853466 253 +  60714840 tccctctgttgcccaggctagagtgcagggatgcaatctcagctcactgcaacctctgtctcccgggttaaagtgattctcctgccttagcctcccgagcagctgggattacaggcacgcaccaccacacctggctaattttgtattttcgtagagacaaatttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccactttggcctcccaaagtcctgggattataggcgtga
i ponAbe2.chr19             C 0 I 5654
e canFam3.chr1               19536362 1046 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102617955 1546 - 106955855 M
e chlSab2.chr6               46754337  32 +  50890351 I
e papAnu2.chr19              47041547  10 +  51301725 I
e macFas5.chr19              54923807  13 +  59248254 I
e rheMac3.chr19              59905480  19 +  64156825 I

a score=291.000000
s hg38.chr19_GL949751v2_alt     49834 3 +   1002683 acc
s panTro4.chr19              58983949 3 +  63644993 acc
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19536362 1046 - 122678785 I
e ponAbe2.chr19              55853719 5654 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102617955 1546 - 106955855 M
e chlSab2.chr6               46754337 32 +  50890351 I
e papAnu2.chr19              47041547 10 +  51301725 I
e macFas5.chr19              54923807 13 +  59248254 I
e rheMac3.chr19              59905480 19 +  64156825 I

a score=9642.000000
s hg38.chr19_GL949751v2_alt     49837 12 +   1002683 cctgagcccAAT
s panTro4.chr19              58983952 12 +  63644993 cctgagcccAAT
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59905499 12 +  64156825 CCTGCGCCCAAC
i rheMac3.chr19             I 19 C 0
s macFas5.chr19              54923820 12 +  59248254 CCTGCGCCCAAC
i macFas5.chr19             I 13 C 0
s papAnu2.chr19              47041557 12 +  51301725 cctgcGCCCAAC
i papAnu2.chr19             I 10 C 0
e canFam3.chr1               19536362 1046 - 122678785 I
e ponAbe2.chr19              55853719 5654 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102617955 1546 - 106955855 M
e chlSab2.chr6               46754337 32 +  50890351 I

a score=54171.000000
s hg38.chr19_GL949751v2_alt     49849 44 +   1002683 CAGGAATCCCATTTTAAGAAGGGAAGCGggctgggtgcggtggc
s panTro4.chr19              58983964 44 +  63644993 CAGGAATCCCATTTTAAGAAGGGAAGGGggctgggtgcggtggc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59905511 44 +  64156825 CAGGAAGCCTATTTTAAGAAGGGAAACGggccaggcgcggtggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923832 44 +  59248254 CAGGAAGCCTATTTTAAgaagggaaacgggccaggcgcggtggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041569 44 +  51301725 CAGGAAGCCTATTTTACGAAGGGAaacgggccaggcgcggtggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754369 44 +  50890351 CAGGAAGCCTATTTTAAGAAGGGAAATGggccaggcgcggtggc
i chlSab2.chr6              I 32 C 0
e canFam3.chr1               19536362 1046 - 122678785 I
e ponAbe2.chr19              55853719 5654 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102617955 1546 - 106955855 M

a score=112748.000000
s hg38.chr19_GL949751v2_alt     49893 65 +   1002683 tcacgcctgtaatcccagcaccttgggaggccaaggcaggcagatcacgaggtcatgagatcgag
s panTro4.chr19              58984008 65 +  63644993 tcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacgaggtcatgagatcgag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102619501 65 - 106955855 tcaccccggtaatcccagcactttgggaggccgaggcgggcaaatcatgaggtcatgagattgag
i nomLeu3.chr10             M 1546 C 0
s rheMac3.chr19              59905555 65 +  64156825 tcacgcctgtaatcccaacactttgggaggccgaggcgggaagatcacgaggtcggaagatcgag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923876 65 +  59248254 tcacgcctgtaatcccaacactttgggaggccgaggcgggaagatcacgaggtcgtaagatcgag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041613 65 +  51301725 tcacgcctgtcatcccaacactttgggaggccgaggcgggaagatcacgaggtcgtaagatcgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754413 65 +  50890351 tcacgcctgtaatcccaacactttgggaggccgaggcgggaagatcacgaggtcgtaagatcaag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19536362 1046 - 122678785 I
e ponAbe2.chr19              55853719 5654 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=478785.000000
s hg38.chr19_GL949751v2_alt     49958 219 +   1002683 accatcctggccaacatggtgaaactccgtctctactaaaaatacaaaaattagctgggcgtggtggcaagcacccgtagtcccagctacttgggaggctgagacaggagaatcacttgagcccaggaggcggaggttgctgtaagccgagattgcaccaccgcactccagcctggcgaaagagtgagactccgtc--------------aaaaaaaaaagagaaaaaGAGGG
s panTro4.chr19              58984073 218 +  63644993 accatcctggccaacatggtgaaactccgtctctactaaaaatacaaaaattagctgggcatggtggtaagcacccgtagtcccagctacttgggaggctgagacaggagaatcacttgaacccaggaggcggaggttgctgtaagccgagattgcaccaccgcactccagcctggcgaaagagtgagactccgtc---------------aaaaaaaaagggaaaaaGAGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55859373 233 +  60714840 accatcctggccaacatggtgaaactccgtctctaccaaaaatacaaaaattagctgggcattgtggcaagcacctgtagtcccagctactcgggaggctgagacaggagaatcacttgaacccaggaggcggagtttgctgtaagccgagattgcaccactgcactccagcctggtgaaagagtgagactctgtcaaaaagaaaaaaaaaaaaaagaaaaagaaaaaGAAGG
i ponAbe2.chr19             I 5654 C 0
s nomLeu3.chr10             102619566 219 - 106955855 accattttggccaacatggtgaaactccgtctctactaaaaatacaaaaattagctgggcgtggtggcaagcacctgtcgtcccagctacttgggaggctgagacaggagaatcacctgaacccaggaggcggaggttgctataagccgagattgcaccaccgcactccagcctggcgaaagagtgagactctgtc--------------aaaaaaaaaaaaaaaatagaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59905620 211 +  64156825 accatcctggccaacatggtgaaactctgtatctactacaaatacaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgctgtaagctgagatcgcaccaccacactccagcctggcgaaagagtgagactccgtc----------------------aaaaaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54923941 213 +  59248254 accatcctggccaacatggtgaaactctgtatctactacaaatacaaaaactagccgggcgtggtggc-ggcgcctgtagtcccagctactcaggaggctgaggcgggagaatggcgtgaacccgggaggcggagcttgctgtaagctgagatcgcaccaccacactccagcctggcgaaagagtgagactccgtc-------------------aaaaaaaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041678 214 +  51301725 accatcctggccaacatggtgaaactccgtatctactacaaatacaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggttgaggcaggagaatggcgtgaacccgggaggcggagcttgctgtaagctgagatcgcaccaccacactccagcctggcgaaagagtgagactccatc-------------------aaaaaaaaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754478 217 +  50890351 accatcctggccaacatggtgaaactccgtatctactacaaatacaaaaattagccgggcgtggtggcaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgctgtaagctgagatcgcaccaccacactccagcctggtgaaagagtgagactccatc----------------aaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19536362 1046 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=929069.000000
s hg38.chr19_GL949751v2_alt     50177 374 +   1002683 GGAAGGGGAAGAGAACAGCAGGGGATTTGGGATGACAGGCCAAGGAGGGTGTAGTTGAAGAAACACTCACCATCTCCCCTTGTGTCTCCTTGGCCCACGCACAGTCCTGCAAGACAATCCTCCGTGAGCCAGAAGCCCCTACCTGGAGCCACGTCACCCCCTGCCCTGACCCCTGGAGATC-GTCCCAGAGTCTCCTGCTGAGAACAGACCCTTAGAGGTCATACGCTCAGGAGTTCTCATTCTCCCCACACTGGACTGTGGCTTCTGCTCGACTTCCAGCTCCTCCATCCTTTCCCAGCGATTCTCCTTGACCATCCTGTGTGGCTGTCACCTCCCCCTGCTCCAGGCCT-TTC----------------CCACAAATCCTTCCATTCTCA
s panTro4.chr19              58984291 374 +  63644993 GGAAGGGGAAGAGAACAGCAGGGAATTTGGGATGACAGGCCAAGGAGGGTGTAGTTGAAGAAACACTCACCATCTCCCCTTGTGTCTCCTTGGCCCACGCACAGTCCTGCAAGACAATCCTCCGTGAGCCAGAAACCCCTACCTGGAGCCACGTCACCCCCTGCCCTGACCCCTGGAGATC-GTCCCAGAGTCTCCTGCTGAGAACAGACTCTTAGAGGTCATACGCTCAGGAGTTCTCATTCTCCCCACACTGGACTGTGGCTTCCGCTCGACTTCCAGCTCCTCCATCCTTTCCCAGAGATTCTCCTTGACCATCCTGTGTGGCTGTCACCTCCCCCTGCTCCAGGCCT-TTC----------------CCACAAATCCTTCCATTCTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55859606 374 +  60714840 GGAAGGGGAAGGGAACAGCAGGGAATTTGGGATGACAGGCCAAGGAGGGTGTAGTTGAGGAAACACTCACCATCTCCCTTTGGGTCTCCTTGGCCCACGCACAGTCCTGCAAGACAATCCTCTATGAACCAGAAGCCCCTGCCTGGAGCCACGTCACCCCCTGCCCTGACCCCTGGAGATC-GTCCCAGAGTCTCCTGCTGAGAATAGACCCTTAGAGGTCATACTCTCAGGAGTTCTCATTCTCCCCACACTGGACTGCGGCTTCCGCTCGACTTCCAGCTCCTCCGTCCTTTCCCAGAGATTCTCCTTGACCATCCTGTGTGGCTCTCACCTCCCCCCGCTCCAGGCCT-TTC----------------CCACAAATCCTTCCATTCTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102619785 354 - 106955855 agaaGGGGAAGGGAACAGCAGGGAATTTGGGATGACAGGCCAAGGAGGGTGTAGTTGAGGAAACACTCACCATCTCCCCCTGTGTCTCCTTGGCCCACGCACAGTCCTGCAAGACAATCCTCTGTGAGCCAGAAGCCCCTGCCTGGAGCCACATCGTCCCCTGCGCTGACCCCTGGAGACC-GTCCCAGAGTCTCCTGCTGAGAACAGACCCTTGGAGGTCATGCGCTCAGGAGTT--------------------CTGTGGCTTCCGCTCGACTCCCAGCTCCTCCGTCCTTTCCCAGAGATTCTCTTTGACCGTCCTGTGTGGCTCTCACCTCCCCCGGCTCCAGGCCT-TTC----------------CCACAAATCCTTCCATTCTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59905831 389 +  64156825 agaaGGGGAAGGGAACGGGAGGCAATTTGGGACGACGGGCCAAGGAGGGTGTGATTGAAGAAACACTCACCATCTCCCCTTGTGTCTCCTTGGCCCATGCACAATCCTGAAAGGCAATCCTCTGTGAGACAGAAGCCCCTGCCTGGAGCCACATCA-CCCCTACCCTGACCCCTGGAGACAGGTCCCAGAGTCTTCTGCTGAGTGCAGACCCTTGGAGGTCATGCGCTCAGGAGTTTTCATTCTCCCCACACTGGACTGTGGCTTCCGCTTGACTTCCAGCTCCCCCGTCGTTTCCCAGAGATTCTCCTTGAGTGTCCTGTGCGGCTCTCACCTCCCCCTGTTCCAGGCCT-TTCCTGGTTCCACATA-ATCCACACATCCTTCTATTCTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54924154 389 +  59248254 agaaggggaagggaacgggagggaaTTTGGGACAACGGGCCAAGGAGGGTGTGATTGAAGAAACACTCACCATCTCCCCTTGTGTCTCCTTGGCCCATGCACAATCCTGAAAGGCAATCCTCTGTGAGACAGAAGCCCCTGCCTGGAGCCACATCA-CCCCTACCCTGACCCCTGGAGACAGGTCCCAGAGTCTCCTGCTGAGTGCAGACCCTTGGAGGTCATGCGCTCAGGAGTTTTCATTCTCCCCACACTGGACTGTGGCTTCCGCTTGACTTCCAGCTCCCCCGTCGTTTCCCAGAGATTCTCCTTGACTGTCCTGTGCGGCTCTCACCTCCCCCTGTTCCAGGCCT-TTCCTGGTTCCACATA-ATCCACACATCCTTCTATTCTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47041892 390 +  51301725 agaaggggaagggaacGGGAGGGAATTTGGGACAACGGGCCAAGGAGGGTGTGATTGAAGAAACACTCACCATCTCCCCTTGTGTCTCCTTGGCCCATGCACAGTCCTGAAAGACAATCCTCCGTGAGACAGAAGCCCCTGCCTGGAGCCACATCACCCCCTACCCTGGCCCCTGGAGACAGGTCCCAGAGTCTCCTGCTGAGTGCAGACCCTTGGAGGTCATGCGCTCAGGAGTTTTCATTCTCCCCACACTGGACTGTGGCTTCCGCTTGACTTCCAGCTCCCCCGTCGTTTCCCAGAGATTCTCCTTGACTGTCCTGTGCGGCTCTCACCTCCCCCTGTTCCAGGCCT-TTCCTGGTTCCACATG-ATCCACATATCCTTCTATTCTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46754695 390 +  50890351 agaaGAGGAAGGGAACGGGAGGGAATTTGGGACAACGGGCCAAGGAGGGTGTGATTGAAGAAACACTCACCATCTCCCCTTGTGTCTCCTTGGCCCATGCACAGTCCTGAAAGACAATCCTCCGTGAGACAGAAGCCCCTGCCTGGAGCCACATCACCCCCTACCCTGACCCCTGGAGACAGGTCCCAGAGTCTCCTGCTGAGTGCAGACCCTTGGAGGTCATGTGCTCAGGAGTTTTCATTCTCCCCACACTGGACTGTGGCTTCCGCTTGACTTCCAGCTCCCCCGTCGTTTCCCAGAGATTCTCCTTGACTGTCCTGTGTGGCTCTCACCTCCCCCTGTTCCAGGCCT-TTCCTGGTTCCACATA-ATCCACACATCCTTCTATTCTCA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103185125 361 + 122678785 GGAAAGAGAAGGGACATG--GGGAGTTTGGAGTGA-AGGAGAGAGAGGGTCTAAATGAAGGA--ACTCACCATCAGTCATCCAGCTACTTTGGCCAACACACAGCCCTGTGAGAGAACTGTCCATGAGACACGAGCACCCGGCTGGAGGCCCGT-----CCCGAGGGGTCTCCTGGG---------CGGGGGCTGCTGCTGAGAACGGACCC-TGGAGATCATGCAACT--GGGTTCTCACT-TCCCCTCACTGGACTGTGGCTGCAGCTGTGCTCTCAGCTCCTGCCCCATTTCTCCAGGAAGGTC--------TCCTGTGTGGCTCTCACCTCACGTGGCCCCAGGACTGGTCCTGGTTCCACAGATGTTCACAAACCCTGTAATTCTTA
i canFam3.chr1              I 1686 n 1046
e calJac3.chr22              45321063 9366 +  49145316 I

a score=86147.000000
s hg38.chr19_GL949751v2_alt     50551 36 +   1002683 TCTTCTGTTTGAAAACAGCACTCATTCTTACCAttt
s panTro4.chr19              58984665 36 +  63644993 TCTTCTGTTTCAAAACAGCACTCATTCTTACCAttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55859980 36 +  60714840 CCTTCTGTTTCAAAACAGCACTCATTCTTACCAttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102620139 36 - 106955855 TCTTCTGTTTCAAAACGGCACTCATTCTTACCAttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59906220 36 +  64156825 TCTTCTGTTTCAATACGGCACTCATTCTTACCAttt
i rheMac3.chr19             C 0 I 18
s macFas5.chr19              54924543 36 +  59248254 TCTTCTGTTTCAATACGGCACTCATTCTTACCATTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042282 36 +  51301725 TCTTCTGTTTCAGTACGGCACTCATTCTTACCATTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46755085 36 +  50890351 TCTTCTGTTTCAATACAGCACTCATTCTTACCAttt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=20721.000000
s hg38.chr19_GL949751v2_alt     50587 16 +   1002683 ctttctttctttcttt
s panTro4.chr19              58984701 16 +  63644993 ccttctttctttcttt
i panTro4.chr19             C 0 I 2
s ponAbe2.chr19              55860016 14 +  60714840 ctttctttctttct--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102620175 16 - 106955855 ctttctttcttttttt
i nomLeu3.chr10             C 0 I 608
s macFas5.chr19              54924579 16 +  59248254 CTTACTTACtttcttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042318 16 +  51301725 cttacttactttcttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46755121 16 +  50890351 cttactttcttttttt
i chlSab2.chr6              C 0 I 8
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e rheMac3.chr19              59906256 18 +  64156825 I

a score=4460.000000
s hg38.chr19_GL949751v2_alt     50603 8 +   1002683 ttctttcc
s panTro4.chr19              58984719 8 +  63644993 ttctttcc
i panTro4.chr19             I 2 C 0
s ponAbe2.chr19              55860030 8 +  60714840 tccttcct
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54924595 8 +  59248254 tttttttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042334 8 +  51301725 ttttttcc
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e chlSab2.chr6               46755137 8 +  50890351 I
e rheMac3.chr19              59906256 18 +  64156825 I

a score=906.000000
s hg38.chr19_GL949751v2_alt     50611 3 +   1002683 ttt
s panTro4.chr19              58984727 3 +  63644993 ttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55860038 3 +  60714840 tct
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54924603 3 +  59248254 ttc
i macFas5.chr19             C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e chlSab2.chr6               46755137 8 +  50890351 I
e papAnu2.chr19              47042342 0 +  51301725 C
e rheMac3.chr19              59906256 18 +  64156825 I

a score=2402.000000
s hg38.chr19_GL949751v2_alt     50614 143 +   1002683 ctttctttct-tttttctttctttcattcattctttctttcattcattccagagacagagtctcgctctttctttctttttctttctttctttctttcattcattctttctttctttcattcattctttctttctttcattcat
s panTro4.chr19              58984730  51 +  63644993 ctttctttctctctctctttctttcattcattctttctttcattcatt---------------------------------------------------------------------------------------------cat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55860041  83 +  60714840 ttctctctctctctccctttctttc-------------ttccttcctt------------------------------------------------ccttcctttctttctctctctctttctttcttcctttctttcttttat
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e chlSab2.chr6               46755137   8 +  50890351 I
e papAnu2.chr19              47042342   0 +  51301725 C
e macFas5.chr19              54924606   0 +  59248254 C
e rheMac3.chr19              59906256  18 +  64156825 I

a score=180.000000
s hg38.chr19_GL949751v2_alt     50757 1 +   1002683 t
s panTro4.chr19              58984781 1 +  63644993 t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55860124 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47042342 1 +  51301725 c
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e chlSab2.chr6               46755137 8 +  50890351 I
e macFas5.chr19              54924606 0 +  59248254 C
e rheMac3.chr19              59906256 18 +  64156825 I

a score=1531.000000
s hg38.chr19_GL949751v2_alt     50758 3 +   1002683 cca
s panTro4.chr19              58984782 3 +  63644993 cCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55860125 3 +  60714840 cca
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54924606 3 +  59248254 ccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042343 3 +  51301725 cct
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e chlSab2.chr6               46755137 8 +  50890351 I
e rheMac3.chr19              59906256 18 +  64156825 I

a score=269629.000000
s hg38.chr19_GL949751v2_alt     50761 150 +   1002683 gagacagagttgcgctctgtcgcccaggctggagtagagtgacgcaatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccaaatagctgggatcacaggcatgcgccaggacgcccggctgag
s panTro4.chr19              58984785 150 +  63644993 gagacagactctcgctctgtcgcccaggctggagtagagtgacgcaatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagccttgcaaatagctgggattacaggcatgcgccaggacgcccggctgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55860128 150 +  60714840 gagacagagtctcgctctgtcgcccaggctggagtagagtgatgcaatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccaaatagctgggattacgggcatgcaccaggatgcccggctgag
i ponAbe2.chr19             C 0 T 5767
s rheMac3.chr19              59906274 150 +  64156825 gagatagagtctcgctctgttgtccaggctggagtagagtgacgcaatctcagctcactgcaacctccgcctctccggttcaagtgattctcctgcctcagcctcccaaacagctgggatcacaggcatgtgtcaccacacccggctgag
i rheMac3.chr19             I 18 C 0
s macFas5.chr19              54924609 150 +  59248254 gagatagagtctcactctgttgtccaggctggagtagagtgacgcaatctcggctcactgcaacctccgcctctccggttcaagtgattctcctgcctcagcttcccaaacagctgggatcacaggcatgtgtcaccacacccggctgag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042346 150 +  51301725 gaggtagagtctcgctctgtcgtccaggctggagtagagtgacgcaatctcggctcactgcaacctccgcctctccggttcaagtgattctcctgcctcagcctcccaaacagctgggatcacaggcatgtgtcaccacgcccggctgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46755145 150 +  50890351 gagatagagtctcgctctgttgtccaggctggagtagagtgacgcaatctcggctcactgcaacctccgcctctccagttcaagtgattctcctgcctcagcctcccaaacagctgggatcacaggcatgcgtcaccacacccggctgag
i chlSab2.chr6              I 8 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I

a score=665006.000000
s hg38.chr19_GL949751v2_alt     50911 361 +   1002683 ttttgtattattagtagagacagggtttcaccatattgg-ccaggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgccgggattacaggcatgagctttgtgcccag---c----------TTCTTTTTAttttttaatttttcattttattattgtgttttgagacagggtctctctctgttgcccaggttggagtgcagtggctccatcatggctcactgtagcctcccaggctcaagtgatcctcccacctcagcctcccgagtagctgggatcacaggtgtgcaccaccacacccggctaattttttagtctttcccagagacagagtctccctatgttgcccaggct
s panTro4.chr19              58984935 361 +  63644993 ttttgtatttttagtagagacagggtttcaccatattgg-ccaggctggtctcgaactcctgacctcaggtgatccacccaccttggcctcccaaagtgccgggattacaggcatgagctttgtgcccag---c----------TTCTTTTTAttttttaatttttcattttattattgtgttttgagacagggtctctctctgttgcccaggttggagtgcagtggctccatcatggctcactgtagcctcccaggctcaagtgatcctcccacctcagcctcccgagtagctgggatcacaggtgtgcaccaccacacccggctaattttttagtctttcgcagagacagagtctccctatgttgcccaggct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55854511 364 +  60714840 ttttgtattattagtagagacagggtttcaccatgttgg-ccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgccgggattacaggcatgagctttgcgcctggccTC----------TTCTTTTTAttttttattttttaattttattattgtgttttgagacagggtctctctcttttgcccaggttggagtgcagtggctccatcatggctcaatgtagcctcccgggctcaagtgatcctcccacctcagcctcccgagtagctgggatcacaggtgtgcaccaccacacccggctaatattttagtcttttgcagagacagagtctccctatgttgcccaggct
i ponAbe2.chr19             T 5767 C 0
s rheMac3.chr19              59906424 365 +  64156825 ttttgtgttattagtagagatggggtttcaccatgttagcccagactggtctcaaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgggactacaggcatgagccttgcacctggccTC----------TTCTTTTTAttttttaattttttattttattattgtgttttgagacagggtctctctctgttgcccaggttggagtacagtggctccatcatggctcactgtagcctcctgggctcaagtgatcctcccacctcagcctcccgagtagctggaatcacaggtgtgcgccaccacacctggctgattttttagtcttttgcagagacagagtctccctatgttgcccaggct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54924759 365 +  59248254 ttttgtgttattagtagagatggggtttcaccatgttagcccagactggtctcaaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgggactacaggcatgagccttgcacctggccTC----------TTCTTTTTAttttttaattttttattttattattgtgttttgagacagggtctctctctgttgcccaggttggagtacagtggctccatcatggctcactgtagcctcctgggctcaagtgatcctcccacctcagcctcccgagtagctggaatcacaggtgtgcgccaccacacctggctgattttttagtcttttgcagagacagagtctccctatgttgcccaggct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042496 365 +  51301725 ttttgtgttattagtagagacagggtttcaccatgttggcccagactggtctcaaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgccgggactacaggcatgagccttgcacctggcctc----------ttctttttattttttaattttttattttattattgtgttttgagacagggtctctctctgttgcccaggttggagtgcagtggctccatcatggctcactgtagcctcctgggctcaagtgatcctcccacctcagcctcccgagtagctggaatcacaggtgtgcaccaccacacctggctgattttttagtcttttgcagagacagagtctccctatgttgcccaggct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46755295 374 +  50890351 ttttgtgttattagtagagatggggtttcaccatgttgg-ccagactggtctcaaactcctgacctcaggtgatccacccacctcagcctcccaaagtgccgggactacaggcatgagccttgcacccggccTCTTCTTTTTATTTCTTTTTAttttttaattttttattttattattgtgttttgagacagggtctctctctgttgcccaggttggagtgcagtggctccatcatggctcactgtagcttcccaggctcaagtgatcctcccacctcagcctcctgagtagctggaatcacaggtgtgcgccaccacacctggctgattttttagtcttttgcagagacagagtctccctatgttgcccaggct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              103185486 1046 + 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I

a score=86062.000000
s hg38.chr19_GL949751v2_alt     51272 38 +   1002683 CATGATCTCTTTTAATCCCTTCATGACTCCAAACAGGA
s panTro4.chr19              58985296 38 +  63644993 CATGATCTCTTTTAATCCCTTCATGACTCCAAACAGGA
i panTro4.chr19             C 0 I 25
s ponAbe2.chr19              55854875 38 +  60714840 CATGATCTCTTTTAATCCCTTAATGACTCCAAACAGGA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59906789 38 +  64156825 CATGATCTCTTTTCATCCCTTCATGACTCCAAACAGGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54925124 38 +  59248254 CATGATCTCTTTTCATCCCTTCATGACTCCAAACAGGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042861 38 +  51301725 catgaTCTCTTTTCATCCCTTCATGACTCCAAACAGGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46755669 38 +  50890351 CATGATCTCTTTTCATCCCTTCATGACTCCAAACAGGA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19537408 36 - 122678785 CATGATCTCTTTTCATCCCTGGAT-ACTCC-AACAGGA
i canFam3.chr1              I 1046 C 0
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I

a score=169506.000000
s hg38.chr19_GL949751v2_alt     51310 108 +   1002683 CAAAATTTATTGTTTGGTGTCCTGTAACAAGCCTCAAAACATCCAAATGGTCATTCCAGAAAGGGGAAAGCATA-CGTTCCTCCCTGTTTCACACATGGCTGCATTTGC
s ponAbe2.chr19              55854913 108 +  60714840 CAAAATTTATTGTTTGGTGTCCTGTAACAAGCCTCAAAACATCCAAATGGTCTTTCCAGAAAGGGGAAAGCATA-CATTCCTCCCTGTTCCACACACAGCTGCATTTGC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59906827 108 +  64156825 CAAAATTTATTGTTTGGTGTCCTGTAACAAGCTTCAAAACATCCAAATGGTCATTCCAGAGAGGAGAAAGCATG-CATTCATCCCTGTTCCACACACAGCTGCCTTTAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54925162 108 +  59248254 CAAAATTTATTGTTTGGTGTCCTGTAACAAGCTTCAAAACATCCAAATGGTCATTCCAGAGAGGAGAAAGCATG-CATTCATCCCTGTTCCACACACAGCTGCCTTTAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47042899 108 +  51301725 CAAAATTTATTGTTTGGTGTCCTGTAACAAGCTTCAAAACATCCAAATGGTCATTCCAGAGAGGAGAAAGCATA-CGTTCATCCCTGTTCCACACACAGCTGCGtttat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46755707 108 +  50890351 CAAAATTTATTGTTTGGTGTCCTGTAACAAGCTTCAAAACATCCAAATGGTCATTCCAGAGGGAAGAAAGCATA-CATTCATCCCTGTTCCACACACAGCTGCGtttat
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19537444 109 - 122678785 CAGAGTTTACCACTTGGTCCTCTGAAACAAGCCTCAAAGAATCCACATGGATATTCCAGAAAGGAGAAAACATACCATCCTTCCTTGCCCCCCTCACAGGTGCATCTGT
i canFam3.chr1              C 0 I 344
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e panTro4.chr19              58985334  25 +  63644993 I

a score=104656.000000
s hg38.chr19_GL949751v2_alt     51418 84 +   1002683 TCTTCCTCCTTTTTAA------TTTTTTTTG--ATAGAGACAGGGCTGGGCTGGTTAAGAACTCTTGACCATgccgggcgcggtggctcccg
s ponAbe2.chr19              55855021 87 +  60714840 TCTTCTTCCTTTTTAA---TTTTTTTTTTTG--ATAGAAACAGGGCCGGGTTGGTTAAGAACTCTTGACCATgctgggcgtggtggctcacg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59906935 88 +  64156825 TCTTCTTCCTTTGTAA--TTTTTTTTTTTTT--ATAGAGACAGGGCCAGGCTGGTTAAGAACTCTTGACCATgccaggcgcggtggctcacg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54925270 90 +  59248254 TCTTCTTCCTTTGTAATTTTTTTTTTTTTTT--ATAGAGACAGGGCCAGGCTGGTTAAGAACTCTTGACCATgccaggcgcggtggctcacg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47043007 92 +  51301725 tcttcttcctttttaattttttttttttttttaatagagacagggccaGGCTGGTTAAGAACTCTTGAccatgccaggcgcggtggctcacg
i papAnu2.chr19             C 0 I 1439
s chlSab2.chr6               46755815 90 +  50890351 tcttcttcctttttaattttttttttttttt--ATAGAGACAGGGCCAGGCTGGTTAAGAACTCTTGACCATgccaggcgcagtggctcacg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19537553 344 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e panTro4.chr19              58985334 25 +  63644993 I

a score=5865.000000
s hg38.chr19_GL949751v2_alt     51502 4 +   1002683 cctg
s ponAbe2.chr19              55855108 4 +  60714840 cctg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59907023 4 +  64156825 cctg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54925360 4 +  59248254 cctg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47044538 4 +  51301725 cctg
i papAnu2.chr19             I 1439 C 0
s chlSab2.chr6               46755905 4 +  50890351 cctg
i chlSab2.chr6              C 0 I 841
e canFam3.chr1               19537553 344 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e panTro4.chr19              58985334 25 +  63644993 I

a score=19920.000000
s hg38.chr19_GL949751v2_alt     51506 14 +   1002683 taatcccagcactt
s ponAbe2.chr19              55855112 14 +  60714840 taatcccagcactt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59907027 14 +  64156825 taatcccagcactt
i rheMac3.chr19             C 0 I 1595
s macFas5.chr19              54925364 14 +  59248254 taatcccagcactt
i macFas5.chr19             C 0 I 2559
s papAnu2.chr19              47044542 14 +  51301725 taatcccagcactt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46756750 14 +  50890351 taatcccagcactt
i chlSab2.chr6              I 841 C 0
e canFam3.chr1               19537553 344 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e panTro4.chr19              58985334 25 +  63644993 I

a score=88532.000000
s hg38.chr19_GL949751v2_alt     51520 68 +   1002683 tgggaggccgaggcaggtggatcacgaggtcaggagttgaagaccagcctggccaacatggtgaaacc
s ponAbe2.chr19              55855126 68 +  60714840 tcggaggccgaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaacatggtgaaacc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59908636 68 +  64156825 tgggaggccgaggcaggtggatcacaaggtcaggaattcaagacaagcctggccaacagggtgaaacc
i rheMac3.chr19             I 1595 C 0
s macFas5.chr19              54927937 68 +  59248254 tgggaggccgaggcaggtggatcacaaggtcaggaattcaagacaagcctggccaacagggtgaaacc
i macFas5.chr19             I 2559 C 0
s papAnu2.chr19              47044556 68 +  51301725 tgggaggccgaggcaggtggatcacgagatcaggagctcaagaccagcctggccaacatggtgaaacc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46756764 68 +  50890351 tgggaggccgaggcaggtggatcacgaggtcaggagttcaagacaagcctggccaacatggtgaaacc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19537553 344 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102620191 608 - 106955855 I
e panTro4.chr19              58985334 25 +  63644993 I

a score=30937.000000
s hg38.chr19_GL949751v2_alt     51588 17 +   1002683 ccgtctatactaaaaat
s ponAbe2.chr19              55855194 17 +  60714840 ctgtctctactaaaaat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102620799 17 - 106955855 ccgtctctactaaaaat
i nomLeu3.chr10             I 608 C 0
s rheMac3.chr19              59908704 17 +  64156825 ctgtctctactaaaaat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54928005 17 +  59248254 ctgtctctactaaaaat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47044624 17 +  51301725 ctgtctctactaaaaat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46756832 17 +  50890351 ctgtctctactaaaaat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19537553 344 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e panTro4.chr19              58985334 25 +  63644993 I

a score=351569.000000
s hg38.chr19_GL949751v2_alt     51605 174 +   1002683 acaaaaattagcca-ggtgtggtgatgggcgcctgtgatcccagctactcaggaggctgaggcagagaatcgcttgaacccaggaggcagagtttgcaatgagctgagatcgcaccactgcactccagcctggccacagcgcgagactcagtttcaggaaagaaaaaaaaa----agag
s panTro4.chr19              58985359 173 +  63644993 acaaaaattagcca-ggcgtggtgatggccgcctgtgatcccagctactgaggaggctgaggcagagaatcacttgaacccaggaggcagaggttgcaatgagctgagatcgcgccactgcactccagcctggccacagtgcgagactcagtttcaggaaagaaaaaaaaa-----gag
i panTro4.chr19             I 25 C 0
s ponAbe2.chr19              55855211 176 +  60714840 acaaaaattagcca-ggcgtggtgatgggcgcctgtaatcccagctactcaggagcctgaggcagagaatcgcttgaacccaggaggcagaggttgcaatgagctgagatagcaccactgcactccatcctggcgacagcacgagactcagtctcaggaaagaaaaaaaaa-aa-agag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102620816 178 - 106955855 acaaatattagccagggagtggtgatgagcgcctgtaatcccagctactcgggaggctgaggcagagaatcgcttgaacccaggaggcggaggttgcaatgagctgagatcgcgccactgcactccagcctggcgacagcacaagactcggtctcaggaaagaataaaaaa-aagagag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59908721 169 +  64156825 acgaaaattggcca-ggcgtggtgccgggcgcctgtagttccagctactcgggaggctgaagcagagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcatgccagtgcactctagcctgtcaacacagcgagactcattctcagaaag-aaaaaaaaa--------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54928022 170 +  59248254 acgaaaattagcca-ggtgtggtgccgggcgcctgtagttccagctactcgggaggctgaagcagagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcatgccagtgcactctagcctggcaacacagcgagactcagtctcagaaagaaaaaaaaaa--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47044641 170 +  51301725 acgaaaattagcca-ggtgtggtgacgggcgcctgtcattccagctactcgggaggctaaagcagagaatcacttgaacccgggaggcagaggttgcagtgagccaagatcatgccagtgcactctagcctggcaacaaagcgagactcagtctcagaaagaaaaaaaaag--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46756849 178 +  50890351 acgaaaattagcca-ggtgtggtgactggcgcctgtagttccagctactcgggaggctgaagcagagaatcacttgaacccgagaggcagaggttgcagtgagccaagatcatgccagtgcactctagcctggcaacagagcgagactcagtctcagaaagaaaaaaaaaaaaagaaag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19537553 344 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=644422.000000
s hg38.chr19_GL949751v2_alt     51779 243 +   1002683 aaagaaaaGAAAAAACATAATATCAAGCCTGTTTATGAACATTATCATAATAATGAGATTGATCTAACTCAAAGAAAGTTAGTTAGGCCTGTGTCTCTGAGAGA----TTTCCTCTTTTTCC------CCTGTGT-----GAACAGTTTTAGGTCTCAGCAG-GAAAAA-GGAGAAGTTACCAGGCGTTTGTGCTACTATTACATCCATGAGCCAATCCATAAACTGACACTTCAAGTTTTGCAAAAGGAAATTGTGaac
s panTro4.chr19              58985532 243 +  63644993 aaagaaaagaaAAAACATAATATCAAGCCTGTTTATGAACATTATCATAATAATGAGATTGATCTAACTCAAAGAAAGTTAGTTAGGCCTGTATCTCTGAGAGA----TTTCCTCTTTTTCC------CCTGTGT-----AAACAGTTTTAGGTCTCAGCAG-GAAAAA-GGGGAAGTTACCAGGCGTTTGTCCTACTATTACATCCATGAGCCAATCCATAAACTGACACTTCAAGTTTTGCAAAAGGAAATTGTGaac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55855387 239 +  60714840 aaagaaaaGAAAAAACATAATATCAAGCCTGTTTATGAACATTATCATAATAATGAGATTGATCTAACTCAAAGAAAGTTAGC----CCTGTGTCTCTGAGAGA----TTTCCTCTTTTTCC------CCTGTAT-----GAACAGTTTTATGTCTCAGCAG-GAAAAA-GGGGAAGTTACCAGGCGTTTGTGCTAGTATTGCATCCATGAGCCAATCCATAAACTGACACTTCAAGTTTTGCAAAAGGAAATTGTGaac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102620994 243 - 106955855 aaagaaaAGAAAAAACATAATATCAAGCCTGTTTATGAACATTATCATAATAGTGAGATTGATCTAACCCAAAGAAAGTTAGTTAGGCCAGTGTGTCTGACAGA----TTGCCTCTTTTCCC------CCTGTAT-----GAACAGTTTTATGTGTCAGCAG-GAAAAA-AGGGAAGTTACCAGGCGTTTGTGCTACTATTGCATCCATGAGCCAATCCATAAACTGACACTTCAAGTTTTGCAAAAGGAAATTGTGaac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59908890 244 +  64156825 aaagaagagaaaaaaCATAATATCAAGCCTGTTTATGGACATTATCATAATAATGGCATTGCTCTAACTCAAAGAAAGTTAGTTAGGCCTGTGTCTCTGAGAGA----TTTCCTCTTTTTCC------CCTGTAT-----GAACAGTTTTATGTCTCAGTAG-GAAGAAGGGGGAAGTTACCAGGCGTTTGTGCTACTATTGCATCCATGAGCCAATGCATAAACTGACATTTCAAGTTTTGCAAAAGGAAATTGTGAAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54928192 243 +  59248254 aaagaagagaaaaaACATAATATCAAGCCTGTTTATGAACATTATCATAATAATGACATTGCTCTAACTCAAAGAAAGTTAGTTAGGCCTGTGTCTCTGAGAGA----TTTCCTCTTTTTCC------CCTGTAT-----GAACAGTTTTATGTCTCAGTAG-GAAGAA-GGGGAAGTTACCAGGCGTTTGTGCTACTATTGCATCCATGAGCCAATGCATAAACTGACATTTCAAGTTTTGCAAAAGGAAATTGTGaac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47044811 243 +  51301725 aaagaagagaaaaaacataatATCAAGCCTGTTTATGAACATTATCATAATAATGACATTGATCTAACTCAAAGAAAGTTAGTTAGGCCTGTGTCTCTGAgaga----tttcctctttttcc------cctGTAT-----GAACAGTTTTATGTTTCAGTAG-GAAGGA-GGGGAAGTTACCAGGCATTTGTGCTACTATTGCATCCACGAGCCAGTGCATAAACTGACATTTCAAGTTTTGCAAAAGGAAACTGTGAAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46757027 243 +  50890351 aaagaagagaaaaaacatAATATCAAGCCTGTTTATGAACATTATCATAATAATGACATTGATCTAACTCAAAGAAAGTTAGTTAGGCCTGTGTCTCTGAGAGA----TTTCCTCTTTTTCC------CCTGTAG-----GAACCGTTTTATGTCTCAGTAG-GAAGAA-GGGGAAGTTACCAGGCGTTTGTGCTACTATTGCATCCATAAGCCAGTGCATAAACTGACATTTCAAGTTTTGCAAAAGGAAATTGTGaac
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19537897 254 - 122678785 TAAGATCTCTTTAAAAATAACATCAAGCCTGCTTACAGAATTTATTGGAAGAGAGAGATTGTTCTAACTCAGCAGATACTGGTTGGACCTGTGTTTCTAAGAGATTTGTTTACTCTTTTTCCTTTTTGCCTATGTTAATGGAACAGTTTTGTGTCTTAGTAGTGAAGAG-GGAAAAGTTACCAGGCCTTTGTGCTAAAAT----TCCATGGG-CACTCCAAAATATTACGTTGCACGGTTTGCAAAAGGCAAGTGATAac
i canFam3.chr1              I 344 I 2530
e calJac3.chr22              45321063 9366 +  49145316 I

a score=152889.000000
s hg38.chr19_GL949751v2_alt     52022 73 +   1002683 acccaaaatgttcaaacaacgtaagtgtccatccatggaagaatggataaacacagtgtgctctatatattca
s panTro4.chr19              58985775 73 +  63644993 acccaaaatgttcaaacaacgtaagtgtccatccgtggaagaatggataaacacagtgtgctctatatattca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55855626 73 +  60714840 acccgaaaggttcaaacaacgtaagtgtccatccatggaagaatgcataaacacagtgtgctctatacattca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102621237 73 - 106955855 acccgaaaggttcaaacaacataagtgtccatccatggaaaaatggataagcacagtgtgctctatacattca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59909134 70 +  64156825 GCTCAAAAGGTTCAAACA---TAAGTGTCCATCCATGGCATGATGGACAAACACAGTGTGCTCCATATATTCA
i rheMac3.chr19             C 0 I 3434
s macFas5.chr19              54928435 70 +  59248254 actcaaaaggttcaaaca---taagtgtccatccatggcatgatggataaacatagtgtgctccatatattca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47045054 70 +  51301725 ACCCAAAAGGTTCAAACA---TAAGTGTCCATccatggaagaatggataaacataGTGTGCTCCATATAttca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46757270 70 +  50890351 acccaaaaggttcaaaca---taagtgtccatctatggcagaatggataaacatagtgtactccatatattca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=30061.000000
s hg38.chr19_GL949751v2_alt     52095 22 +   1002683 atgggattttTCTTCtttttct
s panTro4.chr19              58985848 22 +  63644993 atgggattttTCTTCtttttct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55855699 22 +  60714840 atgggatttttttTCtttttct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102621310 22 - 106955855 atgggatttttttTCTTTTTCT
i nomLeu3.chr10             C 0 I 47
s macFas5.chr19              54928505 15 +  59248254 acgggattttttctt-------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47045124 22 +  51301725 atgagatttttttttcttttct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46757340 22 +  50890351 atgggattttttttctttttct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=45251.000000
s hg38.chr19_GL949751v2_alt     52117 46 +   1002683 tc-gttt-tttttttttttttttttgagacatagtttcattcttgttg
s panTro4.chr19              58985870 46 +  63644993 tc-gttt-tttttttttttttttttgagacatagtttcattcttgttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55855721 47 +  60714840 tcggttt-tgttttcttttttttttgagacatagtttcattcttgttg
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54928520 40 +  59248254 --------ttcttttttttttttctgagacagagtttcgctcttgttg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47045146 44 +  51301725 ---tttc-tttttttttttttttctgagacagagtttcgctcttgttg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46757362 45 +  50890351 ---tttcttttttttttttttttctgagacagagtttcgctcttgttg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102621332 47 - 106955855 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=186645.000000
s hg38.chr19_GL949751v2_alt     52163 103 +   1002683 cccaggctggagtgcaatggcgcgatctcggctcactgcaacctccgcctcgcgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacag
s panTro4.chr19              58985916 103 +  63644993 cccaggctggagtgcaatggcgcgatctcggctcactgcaatctctgcctcacgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55855768 103 +  60714840 cccaggctggagtgcagtggcatgatctcagctcactgcaacctctgcctcatggattcaagtgattcttgtgcctcagcctcccaagtagctgggattacag
i ponAbe2.chr19             C 0 I 7657
s nomLeu3.chr10             102621379 103 - 106955855 cccaggctggagtgcagtggcgcggtcttagctcaccacaacctctgcctcacgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacag
i nomLeu3.chr10             I 47 I 89
s macFas5.chr19              54928560 103 +  59248254 tccaggctggagtgcaatggcgcgatcttggctcactgcaacctccgcctcgcgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47045190 103 +  51301725 tccaggctggagggcaatggcgcgatcttggctcactgcaacctccgcctcgcgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46757407 103 +  50890351 tccaggctggagtgcaatggcgcgatcttggctcactgcaacctccacctcgcgggttcaagtgattctcctgcctcagcctcctaagtagctgggattacag
i chlSab2.chr6              C 0 I 3292
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=2980.000000
s hg38.chr19_GL949751v2_alt     52266 18 +   1002683 ctcac-tgcaacctccgcc
s panTro4.chr19              58986019 18 +  63644993 ctcac-tgcaacctctgcc
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54928663 18 +  59248254 -gcatgcgccaacacagcc
i macFas5.chr19             C 0 I 8
s papAnu2.chr19              47045293 18 +  51301725 -gcatgtgccaacacagcc
i papAnu2.chr19             C 0 I 83
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102621482 89 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=2969.000000
s hg38.chr19_GL949751v2_alt     52284 37 +   1002683 ttgcaggttcaagtgattctcct---------------------------gcctcagcctcccA
s panTro4.chr19              58986037 37 +  63644993 tcgcaggttcaagtgattctcct---------------------------gcctcagcctcccA
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54928689 64 +  59248254 ttgtgggtttttttgttttttttgtttttttgttttttttttgagacagagtcttgctctctca
i macFas5.chr19             I 8 I 15
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102621482 89 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47045311 83 +  51301725 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=14017.000000
s hg38.chr19_GL949751v2_alt     52321 43 +   1002683 agtagctgggattacagctcactgcaa---cctccgccttgtgggt
s panTro4.chr19              58986074 43 +  63644993 agtagctgggattacagctcactgcaa---cctccgccttgtgggt
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54928768 45 +  59248254 agtggc-atgatctccactcactgcaaactccaccgccttctgggt
i macFas5.chr19             I 15 C 0
s papAnu2.chr19              47045394 45 +  51301725 agtggc-gtgatctccactcactgcaaactccaccgcctcccgggt
i papAnu2.chr19             I 83 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102621482 89 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=71112.000000
s hg38.chr19_GL949751v2_alt     52364 170 +   1002683 tcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccatgcccagctaattttgt----attttttagtagagacagggtttcaccatgttggtcaggctgg------------------------------tcttgaactcccc-acctcaggtgatccgcccatcttagcct-ccaaaat---------------------------------gct
s panTro4.chr19              58986117 170 +  63644993 tcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccatgcccagctaattttgt----attttttagtagagacagggtttcaccatgttggtcaggctgg------------------------------tcttgaactcccc-acctcaggtgatccgcccaccttagccc-ccaaagt---------------------------------gct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102621571 221 - 106955855 tcaggtgatccgcccacctcagcctcccaaagtgct-------------TTTTTCTTTTTCTTTTCTTCCtttttt----tttttttttttgagacagggtctcactctgctgcccaggctggagtgcaatgatgtgatcctagttcactccagcatcaacgccccgggctcaagtgatcctcccacctctgcct-cccgagtagctggcactacaggtgcacaccaccatgcccagcT
i nomLeu3.chr10             I 89 C 0
s macFas5.chr19              54928813 173 +  59248254 tcacaccattctcctgccccagcctccctagaaactgggactacaggcgcccaccaccacacctggctaatttttttgtgtgtttttagtagacacggggtttcaccgtttttgccaggatgg------------------------------tctcgatctcctg-acctc--gtgatccacccgccttggcctcccaaagt---------------------------------gct
i macFas5.chr19             C 0 I 31
s papAnu2.chr19              47045439 173 +  51301725 tcacgccattctcctgcctcagcctccctagaaactgggactacaggcgcccaccaccacacctggctaatttttgtgggtgtttttagtagagacggggtttcaccgtttttgccaggatgg------------------------------tctcgatctcctg-acctc--gtgatccgcccaccttggcctcccgaagt---------------------------------gct
i papAnu2.chr19             C 0 I 31
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=2512.000000
s hg38.chr19_GL949751v2_alt     52534 26 +   1002683 tttttctttttcttttctttctttct
s panTro4.chr19              58986287 25 +  63644993 TTTTTCTTTTTCTTTTCtttctttc-
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102621792 25 - 106955855 CATTGTTTTTTGTTGTTGttgtttt-
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47045612 31 +  51301725 I
e macFas5.chr19              54928986 31 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=25587.000000
s hg38.chr19_GL949751v2_alt     52560 53 +   1002683 tttttttttttttttttttttgaggcagggtctcgctc-tgctgcccaggctgg
s panTro4.chr19              58986312 52 +  63644993 -ttttttttttttttttttttgaggcagggtctcgctc-tgctgcccaggctgg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102621817 54 - 106955855 taatatttatttatttattttgagatggagtttcgctcttgttgcccagactgg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54929017 53 +  59248254 ctaattttgtattttttagtagagacagggtttcacca-tgttggtcaggctgg
i macFas5.chr19             I 31 I 5
s papAnu2.chr19              47045643 53 +  51301725 ctaattttatattttttagtagagacagggtttcacca-tgttggtcaggctgg
i papAnu2.chr19             I 31 I 5
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=5943.000000
s hg38.chr19_GL949751v2_alt     52613 35 +   1002683 agtgcaatgatgtgatcctagttcattccagcatc
s panTro4.chr19              58986364 35 +  63644993 agtgcaatgatgtgatcctagttcactccagcatc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102621871 35 - 106955855 agtgcaatggcacaatctccgctcactgcaacccc
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47045696  5 +  51301725 I
e macFas5.chr19              54929070  5 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=68009.000000
s hg38.chr19_GL949751v2_alt     52648 158 +   1002683 aactccctgggctcaggtgatcctcccacctctgcctcccgagtagctgggactacagctgcacaccaccatgcccagctcatttttgttgttgttgttgtttttaatatttatttatttattttgagatggagtttcgctcttgttgcccagactgg
s panTro4.chr19              58986399 158 +  63644993 aactccctgggctcaggtgatcctcccacctctgcctcccgagtagctgggattacagctgcacaccaccatgcccagctcatttttgttgttgttgttgtttttaatatttatttatttattttgagatggagtttcgctcttgttgcccagactgg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102621906 131 - 106955855 tgcctcccgggttcaagcgattctcctgcctcagcctcccaagtacctgggattacaggcacctgccaccacgcctggctaattttta----------tatttttaata----------------gaaatggggtttcac-cctattggccaaactgg
i nomLeu3.chr10             C 0 I 1486
s macFas5.chr19              54929075 148 +  59248254 aactcccc-acctcaggtgatcagcccacctcggcctcccaaagtgctgggattacagctgtgagccaccgcgcctggccTTTTCTT-------tttttcttttctttctttcttttta-tttttgagacagggtttcac-tctgctgcccaggctgg
i macFas5.chr19             I 5 C 0
s papAnu2.chr19              47045701 149 +  51301725 aactcccc-acctcaggtgatcagcccacctcagcctcccaaagtgctgggattacagctgtaagccaccgcacccggccttttttc-------tttttcttttctttctttctttttattttttgagacagggtctcac-tctgctgcccaggctgg
i papAnu2.chr19             I 5 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=63814.000000
s hg38.chr19_GL949751v2_alt     52806 164 +   1002683 agtgcaatggcatgatctcggctcactgcaacctctgactcctgggttcaagcgattctcttgcctcagcctcccaagtagctgggattacaggcgcccgccaccacgcatggctaatttt--------tatatttttag------------tagaaatggggtttcac-cctattggccaggct
s panTro4.chr19              58986557 164 +  63644993 agtgcaatggcatgatctcggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgcccgccaccacgcatggctaatttt--------tatatttttag------------tagagatggggtttcac-cctattggccaggct
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54929223 185 +  59248254 agtgcaatgatgtgatcctagttcactccagcctcaactccctgggctcaagtgatccttccacctcggcctcctgattagctgggacgacaggtgcacaccaccatgcccagctcatttttttgtttgtttgtttttaatatttatttatttagagatggagtttcgctcttgttgcccaggct
i macFas5.chr19             C 0 I 82
s papAnu2.chr19              47045850 185 +  51301725 agtgcaatgatgtgatcctagttcactccagcctcaactccctgggctcaagtgatccttccacctcagcctcccaattagctgggacgacaggtgcacaccaccatgcccagctcatttttttgtttgtttgtttttaatatttatttatttagagatggagtttcgctcttgttgcccaggct
i papAnu2.chr19             C 0 I 82
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102622037 1486 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=3693.000000
s hg38.chr19_GL949751v2_alt     52970 39 +   1002683 gttctcgaactccttacgtcaggtcattgcaaaaaaagt
s panTro4.chr19              58986721 39 +  63644993 gttctcgaactccttacgtcaggtcattgcaaaaaaagt
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102622037 1486 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47046035 82 +  51301725 I
e macFas5.chr19              54929408 82 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=55411.000000
s hg38.chr19_GL949751v2_alt     53009 172 +   1002683 gctgggattacaggcgtgagccaccatgcccagcctcatttttgta-ttttttgtagagacagggtttcaccatgttgcccaggctagtctcgaactcctgggctcaagcgatctgcctgcctcagactctcaaagtgctgggattacaggtgtgagacactgtgctcggcct
s panTro4.chr19              58986760 172 +  63644993 ggtgggattacaggcgtgagccaccatgcccagcctcattttttaa-ttttttgtagagacagggtttcaccatgttgcccaggctagtctcgaactcctgggctcaagcgatctgcctgcctcagactctcaaagtgctgggattacaggtgtgagacattgtgctcggGCt
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54929490 152 +  59248254 gctgggattacaggcgcccgccaccacgcctgg-ctaatttttgta-tttttagtagagatggggtttcacccta-----caggctggtctcaaactccttacatcaggtcat-----tgc---------aaaaagtgctgggattacaggcgtgagtcaccgtgcccagtct
i macFas5.chr19             I 82 I 1977
s papAnu2.chr19              47046117 154 +  51301725 gctgggattacaggcacccgcctccacgcctgg-ctaatttttgtattttttagtagagatggggtttcacccta-----cagactggtctcaaactccttacatCAGGTCAT-----Tgc--------aaaaaagtgctgggattacaggcgtgagtcaccgtgcccagtct
i papAnu2.chr19             I 82 I 2062
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102622037 1486 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=56751.000000
s hg38.chr19_GL949751v2_alt     53181 632 +   1002683 acagtgggattttagccataaaaaggaaaggaaatctgacatatcctacaatatagatgtagctcgaggatattatgctgagtaaactaagtcaggcaaaaaagaacaagtgttatgattccactcatacatcctagaataagcaaattcatagagataaaaattagaatgggctggacacggtggctcacgcctgtaatcccagcactttgggaggccgagacaggcagatcacaaagtcaggagatcgagaccagcctggtcaacatggtgaaaccttgtctctactaaaaaaaaaaaaaaaaaaaacttagccaggcatggtggtgagcgccagtgatcccagctactcgggagggagaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagattaggccactgtactccagcctgggtgacgaagcaagactccatctccgaaaaaaaaaaaaaaaaaaagaaattagaatggaggttaccaggggctgggaggaccgcggcaaatacagagttattggttagagggtgtagcgttcatattgggaattgtgattgttaatttgatttatcagctagaccaggccacaggatgctgggatatctggttaaac
s panTro4.chr19              58986932 624 +  63644993 acagtgggattttagccataaaaaagaaaggaaatctgacatatcctacaatatagatgtagctcgaggatattatgctgagtaaactaagtcaggcacaaaagaacaagtgttatgattccactcatacatcctagaataagcaaattcatacagataaaaattagaatgggctggacacggtggctcacgcctgtaatcccagcactttgggaggccgagacaggcagatcacaaagtcaggagatcgagaccagcctggccaacatggtgaaaccttgtctctact---aaaaaaaaaaaaaaaaacttagccaggcatggtggtgagcgccagtgatcccagctactcgggagggagaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagattaggccactgtactccagcctgggtgacgaagcaagactccatctccg----aaaaaaaaaaaaaaagaaattagaatggaggttaccaggggctgggaggaccgcggcaaatagagagttattggttagagggtgtagagttcatattgggaattgtgattgttaatttgatttatcagctagaccaggccacaggatgctggg-tatctggttaaac
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102622037 1486 - 106955855 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47046271 2062 +  51301725 I
e macFas5.chr19              54929642 1977 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=37464.000000
s hg38.chr19_GL949751v2_alt     53813 145 +   1002683 attatttctgggcgtgtctgtgagggtgtttttagaaagatcagcatttgaatctaatgctgagtcgggcaggttgg-ccttcctaatggaggtgggtattctgctgagggccaggatgggagaaaaaggtggCAGAGCCACcaca
s panTro4.chr19              58987556 145 +  63644993 attatttctgggcgtgtctgtgagggcgtttttagagagatcagcatttgaatctaatgctgagtcgggcaggttgg-ccttcctaatggaggtgggtattctgctgagggccaggatgggagaaaaaggtggCAGAGCCACcaca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102623523 145 - 106955855 attatttctgggtgtgtctgtg-gggtgtttttagagagatcagcgtttgaatccaatgctgagtcgggcaggttggcccttcctaatggaggtgggcattctgctgaaggccaggatgggagaaaaaggtggaagaGCCACcaca
i nomLeu3.chr10             I 1486 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e ponAbe2.chr19              55855871 7657 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47046271 2062 +  51301725 I
e macFas5.chr19              54929642 1977 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=56020.000000
s hg38.chr19_GL949751v2_alt     53958 100 +   1002683 gtggctcacgcctgtaatcccagcactttgggaggccaaggcagaagggctgcttgaggccaggagtttgagaccagcctgagtaacatagtgagatccc
s panTro4.chr19              58987701 100 +  63644993 gtggctcacgcctgtaatcccagcactttgggaggccaaggcagaagggctgcttgaggccaggagtttgagaccagcctgagtaacatagtgagatccc
i panTro4.chr19             C 0 I 136
s ponAbe2.chr19              55863528 100 +  60714840 gtggctcacgcctgtaatctcagcactttgggaggccaaggcagaagggctgcttgaggccaggagttcgagaccagcctgagtaacatagtgagatccc
i ponAbe2.chr19             I 7657 C 0
s nomLeu3.chr10             102623668 100 - 106955855 gtggcttatgcctgtaatcccagcactttgggaggccaaggcagaagggctgcttgaggccaggagttcgagaccagcctgagtaacatagtgagatccc
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47046271 2062 +  51301725 I
e macFas5.chr19              54929642 1977 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=210134.000000
s hg38.chr19_GL949751v2_alt     54058 547 +   1002683 gtctctacaaaaaatttaaaaattaCACGgggcactgtggctcacgcctgtaatcccagcactttgggaggctgaggctgaggcgggcagatcacctgaggtgatcacctgagggagctcaagaccagcctggccaacatgatgaaaccccgtctctactaaaaagtacaaaaaatcagccgggtgtgtggtgggcacctgtaatctcagctacccaggaggctgaggcaggagaattgcttgagcccaggaggtggaggctgcagtgagctgtggtcataccactgcactccagcctgggtacagagtgagactttgtctcaaaaaaaggaaaaggagggaaggaaggaaggaagtaaggaaggaaggaaggaagggaaagagagagaggaaggaaggaatgaaggagaaagagaaagaaagaaaggaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagcaagcaagcaagcaagcaggcaagcaagcgggggctcacg
s panTro4.chr19              58987937 464 +  63644993 gtctctacaaaaaatttaaaaaTTACACGgggcactgtggctcacgcctgtaatcccagcactttgggaggctgaggctgaggcgggcagatcacctgaggtgatcacctgagggagctcaagaccagcctggccaacatgatgaaaccccgtctctactaaaaagtacaaaaaatcagccgggtgtgtggcgggcacctgtaatcccagctacccgggaggctgaggcaggagaattgcttgagcccaggaggtggaggctgcagtgagctgtggtcataccactgcactccagcctgggtacagagtgagactttgtctcaaaaaaaggaaaGgga------------------------aggaaggaaggaagggaaagagagagaggaaggaaggaatgaaggagagagag------------gaaggaaggaat-----------------------------------------------gaaagaaaggaaggaaggaaggaaggaaggaaggaagcaggcaagcaagcgggggctcacg
i panTro4.chr19             I 136 C 0
s ponAbe2.chr19              55863628 458 +  60714840 atctctacaaaaaatttaaaaattacacgggGCAGTgtggctcacgcctgtaatcccagcactttgggaggctgaggctgaggcgggcagatcacctgaggtgatcacctgagggagctcaagaccagcctggccaacatgatgaaaccccgtctttactaaaaagtacaaaaaatcagccaggtgtgtggggggcacctgtaatcccaactacccgggaggctgaggcaggagaattgcttgagcccgggaggtggaggctgcagtgagctgtggtcatatcactgcactccagcctgggtacagagtgagaccttgtctcaaaaaaaGGAgagggaaggaaggaagga------------aggaaagaaggaagggaaagagagacaggaaggaaggaatgaaggagaaaga-------------gaaagaaggaaa-----------------------------------------------aagaaaaagaaagaaagaaagggaa-----------------aagcaagcaggggctcacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102623768 439 - 106955855 gtctctacaaaaaatttaaaaattaCACGgggcactgtggctcatgcctgtaatcccagcactttgggaggctgaggctgaggcaggcagatcacctgaggtgatcacctgagggagctcaagaccagcctggccaacatgatgaaaccccgtctctaataaaaagtacaaaaaatcagcagggtgtgtggtgggcacctgtaatcccagctacccgggaggctgaggcaggagaattgcttgagcctgggaggtggaggctgcagtgagctgtggtcataccactgtactccagcctgggtacagagttagaccttgtctcaaaaaaaggaaagggaaggaaggaagga------------aggaaggaaggaagg------aaggaaggaaggaagg---gagggagggaggg------------aagggaaggaaa-----------------------------------------------gagagagaggaaggaaggaatgaag-----------------gaGAAAGA-----------
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47046271 2062 +  51301725 I
e macFas5.chr19              54929642 1977 +  59248254 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=195365.000000
s hg38.chr19_GL949751v2_alt     54605 357 +   1002683 cctgtaatcccagcactttgggaggccgaggcgggcagatcaa--gaagtcaggagatggagaccatcctggctaacacagtgaaac-------ctacgaaaaa---------------agccgggcatggtggcgggcgcctgtagtcccagctactcgggagg--ctgaggcaggagaatggcgtgaacccgggag-gcggagcttgcagtgagcagagatcgcacc-actgcactccagcctgggcgacagagcgagactccatctcaaaaaaa------------aaaaaaagaaagaaagagagagagag---------gaaggaagggaggaaggaaggaaggaaggaaggaaggaagg--------------------------------------------------aagggaaggagaaaaagaaagaaaggaaggaaggaag-----------------------------------gaag
s panTro4.chr19              58988401 336 +  63644993 cctgtaatcccagcactttgggaggccgaggcgggcagatcaa--gaagtcaggagatggagaccatcctggctaacacagtgaaac-------ctacgaaaaa---------------agccgggcatggtggcgggcgcctgtagtcccagctactcgggagg--ctgaggcaggagaatggcgtgaacccgggag-gcggagcttgcagtgagccgagatcgcacc-actgcactccagcctgggcgacagagtgagactccgtctcaaaaaaa------------aaaaaaa-aaagaaataaagaaagag---------------agagag----------aggaaggaaggaaggaagg--------------------------------------------------aaggaaaggagaaaaagaaagaaaggaaggaaggaag---------------------------------------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864086 394 +  60714840 cctgtaataccagcactttgggaggccaaggcgga-ggatcac--gaggtcaggagattgagaccatcctggctaacacggtgaaac-------ctacgaaaaa-----tacaaaagttagccgggcatggtggcaggcgcctgtagtcccagctacttgggagg--ctgaggcaggagaatggcatgaagctgggag-gcggagcttgcagtgagctgagatcgtgccaactgcactcccacctgggggacagagcgagactccataaaaaaaaaa------------aaaaaaagaaataaagaaagagagag-------aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg----------------agggaaggaaaaaagaaggaaaga---------aaaggaaagaaggaaagaaaagaaagaaaagaaagaaa-----------------------------------gaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102624207 443 - 106955855 -----AAAAccagcactttgggaggccaaggcgggcgaatcac--gaggtcaggagatcgagaccatcctggctaacacagtgaaac-------ctatgaaaaa-----tacaaaagttagccaggcatggtggcaggcgcctgtagtcctagctacttgggagg--ctgaggcaggagaatggcgtgaacctgggag-gcggaacttgcagtgagctgagatcgtgccaatggcactccagcctgggggacagagcgagaatctat-----aaaaa------------aaagaaagaaagaaagaaagagagag-------aggaaggaaggaaggaaggaaggaaggaaggaaggagaaaaga-gagatagagat-gaaagaaagaaagaaaagaaagaaagaaaaagaaagaaagaaaaaaagaaaaagaaagaaaagaaagaaagaaaaagaaagaaaaaaagaaaaagaaagaaagaaaaagaaag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54931619 449 +  59248254 cctgtaatcccagcactttgagaggcagaggcaggtggatcacttaagcccaggagtttgagtctagcctgggcaacatagcaagaccctgtctctacaaagaaaaaaataccaaacttagccaggcatggtagcatgtgcttataaccccacctacttagcagggactgaggca-gaggattgcctgagcccgggggagtgaaggctgcagtgagctgtggtcatgcc-actgcattccagcctgggtgacagagtgagaccttgtctcaagaaaaggaaagggaaggaagaaaGgaaggaaggagagagagagagagaaaagaaagaaagagaaaaagagaaagagagagagaggaaggaaggagaaagagagagagagagagaaagaaaaagaaaagaaagaaagaaaaagaaagaaagagagaaagaaagagaaagaaagaaaaaga----------------------------------------
i macFas5.chr19             I 1977 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46757510 3292 +  50890351 I
e papAnu2.chr19              47046271 2062 +  51301725 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=6413.000000
s hg38.chr19_GL949751v2_alt     54962 10 +   1002683 aaagaaag--------------ag
s panTro4.chr19              58988737 10 +  63644993 AAAGAAAG--------------AG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864480 10 +  60714840 gaaaggag--------------ag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102624650 24 - 106955855 aaagaaagaaaaaaagaaagGAAG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54932068 10 +  59248254 aaagaaaa--------------ag
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46760802 10 +  50890351 aaagaaaa--------------ag
i chlSab2.chr6              I 3292 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e papAnu2.chr19              47046271 2062 +  51301725 I
e rheMac3.chr19              59909204 3434 +  64156825 I

a score=148730.000000
s hg38.chr19_GL949751v2_alt     54972 82 +   1002683 GTTTTAGTGTAGATAGTGGTGATGGTTACACAGCGGCCTCAATTTACTTTATAGTTATCTATTTGACACTAAATTTTTATTT
s panTro4.chr19              58988747 82 +  63644993 GCTTTAGTGTAGATAGTGGGGATGGTTACACAACGGCCTCAATTTACTTTATAGTTATCTATTTGACACTAAATTTTTATTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864490 82 +  60714840 gttttagtatagatagtGGTGATGGTTACAAAACAGCCTCAATTTACTTTATAGTTATCTATTTGACACTAAATTTTTATTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102624674 82 - 106955855 GTTTTAGTGTAGATAGTGGTGATGGTTACACAGCAGCCTCAATTTACTTCATAGTTATCTATTTGACACTAAAttttttttt
i nomLeu3.chr10             C 0 I 358
s rheMac3.chr19              59912638 82 +  64156825 gttttagtatagatagtggtgatggttacacaacaacctcaatttactttatAGTTATCTATTTGGCACTAAATTTTTATTT
i rheMac3.chr19             I 3434 C 0
s macFas5.chr19              54932078 82 +  59248254 gttttagtatagatagtggtgatggttacacaacaacctcaatttactttatAGTTATCTATTTGGCACTAAATTTTTATTT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46760812 82 +  50890351 gttttagtgtagatagtggtgatggttacacaacaacctcaatttactttatAGTTATCTATTTGGCACTAAATTTTTATTT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e papAnu2.chr19              47046271 2062 +  51301725 I

a score=26342.000000
s hg38.chr19_GL949751v2_alt     55054 20 +   1002683 ATGGTATTAAGGTTTCTGgg
s panTro4.chr19              58988829 20 +  63644993 ATGGTATTAAGGTTTCTGgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864572 20 +  60714840 ATGGTATTAAGGTTTCTGgg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59912720 20 +  64156825 ATGGTGTTAGGGTTTCTGgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54932160 20 +  59248254 ATGGTGTTAGGGTTTCTGgg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46760894 20 +  50890351 ATGGTGTTAAGGTTTCTGgg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102624756 358 - 106955855 I
e papAnu2.chr19              47046271 2062 +  51301725 I

a score=339079.000000
s hg38.chr19_GL949751v2_alt     55074 187 +   1002683 ccaggcacagtggctcacatctgtaatcccagcactttgagagactgaggtgggcagatcacctgaggtcgggagttcgagaccagcctggccaacatggtgaaa-cactgtctctactaaaaatacaaaaattaaccaggcatggtggcgcacccctgtaatccagttactcaggaggctgaagcag
s panTro4.chr19              58988849 187 +  63644993 ccaggcgcagtggctcacatctgtaatcccagcactttgagagactgaggtgggcagatcacctgaggtcgggagttcgagaccagcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaattaactaggcatggtggcgcacccctgtaatccagttactcaggaggctgaagcag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864592 187 +  60714840 ccaggcgcagtggctcaggtctgtaatcccagcactttgagaggctgaggtgggaagatcacctgaagtcgggagttcgagaccagcctggccaacatggtgaaa-ctctgtctctactaaaaatacaaaaattaaccaggcatggtggcgcacccctgtaatccagttactcaggaggctgaagcag
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59912740 187 +  64156825 ccaggcacagtggctcacgcctgtaatcccagtactttgggaggctgaggctggcagatcacctgaggtcaggagttcgagaccagactggccaacatggtgaaa-ccccatctctactaaaaatacaaaaattaaccaggcgtggtggtgcacccctttaatccagttactcaggaggctgaagcag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54932180 187 +  59248254 ccaggcacagtggctcacgcctgtaatcccaatactttgggaggctgaggctggcagatcacctgaggtcaggagttcgagaccagactggccaacatggtgaaa-ccccatctctactaaaaatacaaaaattaaccaggcgtggtggcgcacccctttaatccagttactcaggaggctgaagcag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47048333 187 +  51301725 ccaggcacagtggctcacgcctgtaatcccagtactttgggaggctgaggctggcagatcacctgaggtcaggagttcgagaccagactggccaacatggtgaaa-ccccatctctactaaaaatacaaaaattaaccagacatggtggcacacccctttaatccagttactcaggaggctgaagcag
i papAnu2.chr19             I 2062 C 0
s chlSab2.chr6               46760914 188 +  50890351 ccacgcacagtggctcacgcctgtaatcccagtactttgggaggctgaggctggcagatcacctgaggtcaggagttcgagaccagactggccaacatggtgaaacccccatctctactaaaaatacaaaaattaaccaggcatggtggcgcacccctttaatccagttactcaggaggctgaagcaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e nomLeu3.chr10             102624756 358 - 106955855 I

a score=198623.000000
s hg38.chr19_GL949751v2_alt     55261 100 +   1002683 gagaatcgcttgaacccgggaggcagaggttgtggtgagccgagatcatgccattgcactacagcctgggcaacaagagcaaaactctgtctcaaa--aa--aa
s panTro4.chr19              58989036 100 +  63644993 gagaatcgcttgaacccaggaggcagaggttgtggtgagccgagatcacgccattgcactccagcctgggcaacaagagcaaaaccctgtctcaaa--aa--aa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864779 102 +  60714840 gaggatcgcttgaacccaggagccggaggttgtggtgagccgagatcacgccattgcactccagcctgggcaacaagagcaaaaccgtgtctcaaaataa--aa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102625114  96 - 106955855 gagaatcgcttgaacccgggaggcggaggttgtggtgagccgagatcatgccattgcactccagcctgggcaacaagagcaaaaccctgtctcaat--------
i nomLeu3.chr10             I 358 C 0
s rheMac3.chr19              59912927  96 +  64156825 gagaatctcttgaacccaggaggcaggggttgcagtgagttgagatcacgccactgcactccaacctgggcaagaagagtgaaaccctgcctc--a--aa----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54932367  98 +  59248254 gagaatctcttgaacccaggaggcaggggttgcagtgagttgagatcacgccactgcactccaacctgggcaagaagagtgaaaccctgcctcaaa--aa----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47048520  97 +  51301725 gagaatctcttgaacccgggaggcgggggttgcagtgagtcgagatcacgccattgcactccagcctgggcaagaagagtgaaaccctgcctc-aa--aa----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761102 100 +  50890351 gagaatctcttgaacccgggaggcgggggttgcagtgagttgagatcacgccattgcattccagcctgggcaagaagagtgaaaccctgcctcaaa--aaaa--
i chlSab2.chr6              C 0 I 14
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=34925.000000
s hg38.chr19_GL949751v2_alt     55361 25 +   1002683 taaaataaaataaaataaaataaGG
s panTro4.chr19              58989136 25 +  63644993 taaaataaaataaaataaaataaGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864881 25 +  60714840 taaaataaaataaaataaaataaGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102625210 24 - 106955855 -aaaataaaataaaataaaataaGg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59913023 25 +  64156825 aaaaaaaaaaaaaaaaaagataaGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54932465 25 +  59248254 aaaaaaaaaaaaaaaaaaaaaaaGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47048617 25 +  51301725 aaaaaaaaaaaaaaaaaaaaaaagg
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19538151 2530 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46761202 14 +  50890351 I

a score=1385178.000000
s hg38.chr19_GL949751v2_alt     55386 670 +   1002683 TTTCTATTCTGAATACTTTTACTTACACACAAAAAGTCAGAGTTGATCCTGAGAAAAGG----GGTAAGCCAATGAAGC-CAGGTGGTGGAGGCATTCAGCAAAACTCACGAAGTTGAAACTACAGGAGTTGAAGTTTGCAGAGCACTCGTTTCC---AGGGAATGTCTGCACTGCACTCAGCAGGACGTCTCACTCCTCCCGTGTGC-------------TCAGTAAGCCAAAGTTGATGTTAT------TA-TTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCATGATTTTCTGCAGTCCCAGTGGATAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGGGATCATGATGGCTCCTTA------GCCCTCCCAGAGTCCGTCTTGGGTTCTGCAGTCCACAGATGGGAGAAGAGCTGGAGTCGTCGCTGCCTCTCTCCCACCCCAGAGTGTGGGCAGTAACAGCCTT-TCCTAG-CCTTTCAGTTTCCCCTCCCATATCCACATTCAGGAAACA-TGTTGATGTTGCTGATTGCAACATGCTCCTTACACACACCAGTGTTCGAGCACTTGACTCACAGGAAATGCTCCTCTGTCTCAGGCAGATTTCAGGCATCAAACAGGTAA--------CCCCGAAAATGCTTCAGACTTGGCCCTGAAGGGTTCGTATTGAAGAGATGAAAGCACTTCACtc
s panTro4.chr19              58989161 669 +  63644993 TTTCTATTCTGAATACTTTTACTTACACACAAAAAG-CAGAGTTGATCCTGAGAAAAGG----GATAAGCCAATGAAGC-CAGGTGGTGGAGGCATTCAGCAAAACTCACGAAGTTGAAACTACAGGAGTTGAAGTTTGCAGAGCACTCATTTCC---AGGGAATGTCTGCAGTGCACTCAGCAGGACGTCTCACTCCTCCCGTGTGC-------------TCAGTAAGCTAAAGTTGATGTTAT------TA-TTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCATGATTTTCTGCAGTCCCAGTGGATAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGGGATCATGATGGCTCCTCA------GCCCTCCCAGAGTCCGTCTTGGGTTCTGCAGTCTACAGATGGGAGAAGAGCTGGAGTCGTCGCTGCCTCTTTCCCACCCCAGAGTGTGGGCAGTAACAGCCTT-TCCTAG-CCTTTCAGTTTCCCCTCCCATATCCACATTCAGGAAACA-TGTTGATGTTGCTGATTGCAACATGCTCCTTGCACACACCAGTGTTCGAGCACTTGACTCACAGGAAATGCTCCTCTGTCTCAGGCAGATTTCAGGCATCAAACAGGTAA--------CCCCGAAAATGCTTCAGACTTGGCCCTGAAGTGTTCGTATTGAAGAGATGAAAGCACTTCAttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55864906 670 +  60714840 TTTCTATTCTGAATATTTTTACTTACATACAAAAAGTCAGAGTTGATCCTGAGAAAAGG----GGTAAGCCAATGAAGC-CAGGTGGTGGAGGCATTCAGCAAAACTCACAAAGTTGAAACTAGAGGAGTTGAAGTTTGCAGAGCACTCATTTCC---AGGGAATGTCTGCAGTGCACTCAGCAGGACGTCTCACTCCTCCCGTGTGC-------------TCAGTAAGCCAAAGTTGATGTTAT------TA-TTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCCTGATTTTCTGCAGTCCCAGTGGATAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGGGATCATGATGGCTCCTCA------GCCCTCCCAGAGTCCGTCTTGGGTTCTGCAGTCCACAGATGGGAGAAGAGCTGGAGTCGTCGCTGCCTCTCTCCCACCCCAGAGTGTGGGCAGTAACAGCCTT-TCCTAG-CCTTTCAGTTTCCCCTCCCATACCCACATTCAGGAAACA-TGTTGATGTTGCTGATTGCAACATGCTTCTTACACACACCAGTGTTCGAGCACTTGACTCACAGGAAATGCTCCTCTGTATCAGGCAGATTTCAGGTATCAAACAGGTAA--------CCCCGAAAATGCTTCAGACTTGGCCCTGAAGGGTTCGTATTGAAGAGATGAAAGCACTTCACTC
i ponAbe2.chr19             C 0 I 4
s nomLeu3.chr10             102625234 671 - 106955855 tttctattctgaatacttttacttacagacaaaaagtcagagttgatcctgagaaaagg----ggtaagccaatgaagc-caggtggtggaggcattcagcaaaactcacgaagttgaaactagaggagttgaagtttgcagagcactCGTTTCC---AGGGAATGTCTGCAGTGCACTCAGCAGGACGTCTCACTCCTCCCATGTGC-------------TCAGTAAGCCAAAGTTGATGTTAT------TATTTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCATGATTCTCCGCAGTCCCAGTGGTTAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGGGATCATGATGGCTCCTCA------GGTCTCCCAGGGTCCGTCTTGGGTTCTGCAGTCCACAGATGGGAGAAGAGCTTGAGTCGTCACTGTCTCTCTCCCACCCAAGAGTGTGGGCAGTAACAGCTTT-TCCTAG-ACTTTCAGTTCCCCCTCCCATATCCACATTCAGGAAACA-TGTTGATGTTGCTGATTGCAACATGCTCCTTACACACACCAGTGTTTGAGCACTTGACTCACAGGAAATGCTCCTCTGTCTCAGGCAGATTTCAGGCATCAAACAGGTAA--------CCCCGAAAATGCTTCAGACTTGGCCCTGAAGGGTTCATATTGAAGAGATGAAAGCACTTCACtc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59913048 670 +  64156825 TTTCTATTCTGAATACTTTTACTTACACACAAAAAGTCAGAGTTTATCCTGAGAAAAGG----GGTAAGCCAATGAAGC-CAGGTGGTGGAGGCATTCAGCAAAACTCACGAAGTTGAAACCAGAGGAGTTGAAGCTTGCAGAGCGCTTGTTTCC---AGGGAGTGTCTGCAGTGCACTCAGCAGGACGTCTCACTCCTCCCGTGTTC-------------TCAGTAAGCCAAAGTTGATGTTAT------TT-TTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCATGATATTCTGCATTCCCAGTGGATAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGAGATCATGATGACTTCTCA------GCCCTCCCAGGGTCCGTCTTGGGTTCTGCAGTCCGCAGATGGGAGAAGAGCTGGAGTCGTCGCTGCCTCTCTCCCACCCCGGAGTGGAAACAGTAACAGCCTTGTCCTAG-CCTTTCAGTT-CCCCTCCCATATCCACATTCAGGAAACG-TGTTGATGTTGCTGATTGCAACATGCTCCTTACACACACCAGCGTTTGAGTATTTGACTCACAGGAAATGCTCCTCTGTCTCAGGCAGATTTCAGGCATCAAACAGGTAA--------CCCCGAAAATGCTTCAGACTTGGCCCTGAAGGGTTCGTATTGAAGAGATGAAAGCACTTCACTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54932490 670 +  59248254 TTTCTATTCTGAATACTTTTACTTACACACAAAAAGTCAGAGTTTATCCTGAGAAAAGG----GGTAAGCCAATGAAGC-CAGGTGGTGGAGGCATTCAGCAAAACTCACGAAGTTGAAACCAGAGGAGTTGAAGCTTGCAGAGCGCTTGTTTCC---AGGGAGTGTCTGCAGTGCACTCAGCAGGACGTCTCACTCCTCCCGTGTTC-------------TCAGTAAGCCAAAGTTGATGTTAT------TT-TTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCATGATATTCTGCATTCCCAGTGGATAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGAGATCATGATGACTTCTCA------GCCCTCCCAGGGTCCGTCTTGGGTTCTGCAGTCCGCAGATGGGAGAAGAGCTGGAGTCGTCCCTGCCTCTCTCCCACCCCGGAGTGGAAGCAGTAACAGCCTTGTCCTAG-CCTTTCAGTT-CCCCTCCCATATCCACATTCAGGAAACG-TGTTGGCGTTGCTGATTGCAACATGCTCCTTACACACACCAGTGTTTGAGTATTTGACTCACAGGAAATGCTCCTCTGTCTCAGGCAGATTTCAGGCATCAAACAGGTAA--------CCCCGAAAATGCTTCAGACTTGGCCCTGAAGGGTTCGTATTGAAGAGATGAAAGCACTTCACTC
i macFas5.chr19             C 0 I 12
s papAnu2.chr19              47048642 670 +  51301725 tttctattCTGAATACTTTTACTTACACACAAAAAGTCAGAGTTTATCCTGAGAAAAGG----GGTAAGCCAATGAAGC-CAGGTGGTGGAGGCATTCAGCAAAACTCACGAAGTTGAAACCAGAGGAGTTGAAGCTTGCAGAGCACTTGTTTCC---AGGGAATGTCTGCAGTGCACTCAGCAGGACGTCTCACTCCTCCCGTGTTC-------------TCAGTAAGCCAAAGCTGATGTTAT------TT-TTTCCATCCCCAGCCCAA----------CTA---------------------------------------TCCCACCAGTTCCGTGATATTCTGCAGTCCCAGTGGACAGCCCTGTGAGACTTACTGAAACAGAGGAGGGAAAGCAGCTTAGAGATCATGATGGCTTCTCA------GCCCTCCCAGGGTCCGTCTTGGGTTCTGCAGTCCACAGATGGGAGAAGAGCTGGAGTCGTCGCTGCCTCTCTCCCACCCCGGAGTGGAAGCAGTAACAGCCTTGTCCTAG-CCTTTCAGTT-CCCCTCCCATATCCACATTCAGGAAACG-TGTTGACGTTGCTGATTGCAACATGCTCCTTACACACACCAGTGTTTGAGCACTTGGCTCACAGGAAATGCTCCTCTGTCTCAGGTAGATTTCAGGCATCAAATAGGTAA--------CCCTGAAAATGCTTCAGACTTGGCCTTGAAGGATTCGTATTGAAGAGATGAAAGCACtccgctc
i papAnu2.chr19             C 0 I 311
s canFam3.chr1               19540681 751 - 122678785 tttctattgtaagcacttttctttaaggaaaaaaggtt-gagtctatattaaaaacaaaacacattaagccaataaagtacaggtagcaaaggcattcagcagaaaccctgaacttggaacaagactaatcgaaatttgtaaagcaccgGCTTACATTATGTAGCATATGCATTGCACTCAGCGAGATTTCTTTTTTTTTTTTTTTTTAAGATTTCTGCAGCCGATAAACCAAAGCTGATGTTTTATTTTCTC-TTTCCATCCCCAGTCCAAATCTCTtaccctacttgatcttagccaagagacagagaagcaatACCAAACCTCTTACCAATTCTATCGTTTTCTGTGGTCCCAATGTGT-GCCCTGTGACACTTACTGAGACAGAGGAGTGGGAGTAGTTGGGAAATCATGGCAGCACGTCACTTTCTGCCTGTCCAACGCCTACTTTCAGTTCTGCAGTCCACGGGTGGGCGAGGAGCTGGGGTGGCCATGGCCTTGCCCTGAATCCACAGTGTCGA-AGTAATGATTTT-TCTCAGACTTTTCAGTTCCTCCTTCCATG-CCGCTTTCTGAAAATGTTGTTGGTGCTGCCGATTGCAACATACTCTTTG--CACACTTGGCTTCAAAGACTTGGCTCACAGAAAGTCCTCATCTGTC----ACAGATTTCAGGCATCAAATGTGTGACGCCCCCTCCCCCCAGATGCCCAAGGCTTGAGCCTGAAGAGTTCCTA-AGAGGAGATAAAGGTACCTCACTG
i canFam3.chr1              I 2530 C 0
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46761202  14 +  50890351 I

a score=3008.000000
s hg38.chr19_GL949751v2_alt     56056 2 +   1002683 tt
s panTro4.chr19              58989830 2 +  63644993 tt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55865580 2 +  60714840 tt
i ponAbe2.chr19             I 4 C 0
s nomLeu3.chr10             102625905 2 - 106955855 tt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59913718 1 +  64156825 -t
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54933172 1 +  59248254 -t
i macFas5.chr19             I 12 C 0
s papAnu2.chr19              47049623 1 +  51301725 -t
i papAnu2.chr19             I 311 C 0
s canFam3.chr1               19541432 2 - 122678785 TT
i canFam3.chr1              C 0 I 22356
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46761202 14 +  50890351 I

a score=456377.000000
s hg38.chr19_GL949751v2_alt     56058 274 +   1002683 tttttttttttt-gagatggtgtctggttctgttacctgggctggagtccagtggcacgatctcaggtcattgcaacttcagcctcctgggttcaagcaattctccggcctcagcctcccaagtagctgggattataggcgcatgccaccatgcccggctaatgtttgtatttttagttaagatgaggtttca-caagttagctgggctagtcttgaactcctcgcctcaagtgatccacctgcctcggcctcccaaactgctgggattacaggca
s panTro4.chr19              58989832 275 +  63644993 tttttttttttttgagatggtgtctggttctgttacctgggctggagtccagtggcacgatctcaggtcattgcaacttcagcctcctgggttcaagcaattctccggcctcagcctcccaagtagctgggattataggcacatgccaccatgcccggctaatgtttgtatttttagttaagatgaggtttca-caagttagctgggctagtcttgaactcctcgcctcaagtgatccacctgcctcggcctcccaaactgctgggattacaggca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55865582 275 +  60714840 tttttttttttttgagatggtgtctggttctgttacccaggctggagtccagtggcacgatctcagctcattgcaacttcagcttcctgggttcaagcaattctccagcctcagcctcccaagtagctgggattataggtgcatgccaccatgcccagctaatgtttgtatttttagttaagatgaggtttca-caagttagccaggctagtcttgaactcctggcctcaagtgatccacctgcctcagcctcccaaactgctgggattacagtca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102625907 273 - 106955855 ttttttttttt--gagatggtgtctggttctgtcacccaggctatagtccagtggcacgatctcagctcattgcaactttagcctcctgggttcaagtgattctcctgcctcagcct-ccaagtagctgggattacaggcgcatgccaccatgcccaactaatgtttgtatttttagttaagacgaggtttcaccaagttggctgagctggtctcaaactcctggcctcaagtgatccacctgcctcagcctcccagactgctgggattacaggca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59913719 273 +  64156825 tttttttttttttgagatggaatctgattctgtcacctggactggagtccagtggcgcaatctcggctcattgcaacttcagcctcctgtgttcaagtgattctcctgcctcagcctcccaaggagctgggattacaggctcatgccactacacccggc---tgtttgtatttttagttaagatgaggtttcaccaagttggccaggctggtctctaactcctggcctcaagtgatccacttgcctcggcctccccaactgctgggattacaggtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54933173 273 +  59248254 tttttttttttttgagatggaatctgattctgtcacctggactggagtccagtggcgcaatctcggttcattgcaacttcagcctcctgggttcaagtgattctcctgcctcagcctcccaaggagctgggattacaggctcatgccactacacccggc---tgtttgtatttttagttaagatgaggtttcaccaagttggccaggctggtctctaactcctggcctcaagtgatccacttgcctcggcctccccaactgctgggattacaggtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47049624 273 +  51301725 tttttttttttttgagatggaatctggtcctgtcacctggactggagtccagtggtgcaatctcggctcattgcaacctcagcctcctgggttcaagtgattctcctgcctcagcctcccaaggagctgggattacaggtgcatgccaccacacctggc---tgtttgtatttttagttaagatgaggtttcaccaagttggtcgggctggtctcgaactcctggcctcaagtgatccacctgcctcggcctccccaactgctgggattacaggtg
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19541434 22356 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I
e chlSab2.chr6               46761202  14 +  50890351 I

a score=764138.000000
s hg38.chr19_GL949751v2_alt     56332 343 +   1002683 tgagccactgtgccagg---------ccTTCATCACCAt-----tttttttttttcttttgagacagagttccactctttcgcccaggctggagtgaagtggcaaaatctcatctcattgcaacctccaccccccaggttcaagcggttctcctgcctcagcctcccaagtagctgggattacaggagcccttcaacatgcccagtta------------------------------------------atttttgta----ttttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgatctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccactgtgcccagccAGTCATGAG-CTCA--T
s panTro4.chr19              58990107 341 +  63644993 tgagccactgtgccagg---------ccTTCATCACCAt-----ttttttttt--cttttgagacagagttccactctttcgcccaggctggagtgaagtggcataatctcatctcattgcaacctccaccccccaggttcaagcggttctcctgcctcagcctcccaagtagctgggattacaggagcccttcaacacgcccagtta------------------------------------------atttttgta----ttttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccactgtgcccagccAGTCATGAG-CTCA--T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55865857 338 +  60714840 tgagccactgtgccagg---------ccTTCATCACCAt-----ttttttttt------tgagatagacttccactcttttgcccaggctggagtgaagtggcataatctcatctcactgcaacctccaccccccaggttcaagcggttctcctgcctcagcctcccaagtagctgggattacaggagcccttcaacacgcccagtta------------------------------------------atttttgta----ttttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccactgtgcccagccAGTCATGAGCCTCA--T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102626180 351 - 106955855 tgagccaccacgccaggACTTCATCACCTTCATCACCtt-----ttttttttttttttttgagatggagttccactctttcgcccaggctggagtgaagtggtgtaatctcagctcactgcaacctccatcccccaggttcaagtgattctcctgcctcagccgcccgagtagctgggattacaggagccctccaacatgcccagtta------------------------------------------atttttgta-----tttttagtagagacgaggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcccagccAGTCATGAG-CTCA--T
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59913992 387 +  64156825 tgagccaccgcaccagg---------ccGTCATCACCCC----tttttttttttttttttgagattgagttccactcttttgcccaggctggagtgaagtggcataatctcagctcactgcaacctctcccccccaggttcaagtaattctcctgcctcagcctcccgagtagctgggattacaggtgccctccaacatgcccagttaatttattatc---attattattattatactttaagccaggtcatttttgta-tttttttttagtagagacgaggtttcaccatgttggccagggtggtctcgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgttgcgattacaggcgtgagccactgtgcccagccAGTCATGAG-CTCA-TT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54933446 384 +  59248254 tgagccaccgcaccagg---------ccTTCATCACCAC--------tttttttttttttgagatggagttccactcttttgcccaggctggagtgaagtggcataatctcagctcgctgcaacctctacccaccaggttcaagtaattctcctgcctcagcctcccgagtagctgggattacaggtgccctccaacatgcccagttaatttattatc---attattattattatactttaagccagttcatttttgtattttttttttagtagagacgaggtttcaccatgttggccagggtggtctcgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgttgcgattacaggcgtgagccactgtgcccagccAGTCATGAG-CTCA-TT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47049897 349 +  51301725 tgagccaccgcgccagg---------ccttcatcaccactttttttttttttttttttttgagatggagttctactctttcgcccaggctggagtgaagtggcgtaagctcagctcactgcaacctccaccccccaggttcaagtaattctcctgcctcagcctcccgagtagctgggattacaggtgccctccaacatgcccagtta------------------------------------------atttttgta----ttttttagtagagacgaggtttcaccatgttggccagggtagtctcgaactcctgacctcaagtgatccacccacctcagcctcccaaagtgttgcgattacaggcgtgagccactgtgcccagccagtcatgag-ttca-tt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761216 395 +  50890351 TGAGCCACCGCACCAGG---------CCTTCATCACCACttcttttttttttttttttttgagatggggttccactctttcgcccaggctggagtgaagtggcataatctcagctccctgcatcctccacccaccagtttcaagtaattctcctgcctcagcctcccgagtagctgggattacaggtgccctccaacatgcctagttaatttattatcattattattattattatactttaagccagttaatttttgta-tttttgtttagtagagacgaggtttcaccatgttggccagggtggtctcgaactcctgacctcacgtgatccacccgcctcagcctcccaaagtgttgcgattacaggcgtgagccactgtgcccagccAGTCATGAG-CTCATTT
i chlSab2.chr6              I 14 C 0
e canFam3.chr1               19541434 22356 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=144425.000000
s hg38.chr19_GL949751v2_alt     56675 50 +   1002683 TTTTTAAGTTCAGaatatttcagtacatatctatctttatcaaataagaa
s panTro4.chr19              58990448 50 +  63644993 TTTTTAAGTTCAGaatatttcagtacatatctatctttatcaaataagaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55866195 50 +  60714840 TTTTTAAGTTCAGACTATTTCAATACATATCTATCTTTATAAAATCAGAA
i ponAbe2.chr19             C 0 I 25
s nomLeu3.chr10             102626531 50 - 106955855 TTTTTAAGTTCAGaatatttcagtacgtatctatctttatcaaataagaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59914379 50 +  64156825 TTTTTAAGTTCAGaatatttcagtacatatatatctttatcaaataagaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54933830 50 +  59248254 TTTTTAAGTTCAGaatatttcagtacatatatatctttatcaaataagaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47050246 50 +  51301725 tttttaagttcagaatatttcagtatatatatatctttatcaaataagaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761611 50 +  50890351 TTTTTAAGTTCAGaatatttcagtacatatatatcttcatcaaataagaa
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19563790 50 - 122678785 tttttaatcccaaaatattttagtacatagctatctttatcagatgagaa
i canFam3.chr1              I 22356 C 0
e calJac3.chr22              45321063 9366 +  49145316 I

a score=246775.000000
s hg38.chr19_GL949751v2_alt     56725 143 +   1002683 -ccattttaaaa---ataatataagcaccacagcactgtcacatcaagaaagttaagagtacctccttgataccagctaat-acccattcagtactcaaatttccctgattgtctcaaaaatgtcatttctatcaggtttttaaagaa
s panTro4.chr19              58990498 143 +  63644993 -ccattttaaaa---ataatataagcaccacagcactgtcacatcaagaaagttaagagtacctccttgataccagctaat-acccattcagtactcaaatttccctgattgtctcaaaaatgtcatttctatcaggtttttaaagaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102626581 101 - 106955855 -ccattttaaaa---ataatataagcaccatagcactgtcacatcaggaaagttaaGAGTG-------------------------------------------cttgattgtctcaaaaatgtcatttctatcaggtttttaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59914429 143 +  64156825 -ccattttaaaa---ataatataaacaccatagcactgtcacatcaggaaaatgaagggtacttccttgataccagctaat-acccattcagtattcaaatttccttgattgtctcaaaaatgtcatttctatcaggcttttaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54933880 143 +  59248254 -ccatttttaaa---ataatataaacaccatagcactgtcacatcaggaaaatgaagggtacttccttgataccagctaat-acccattcagtattcaaatttccctgattgtctcaaaaatgtcatttctatcaggcttttaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47050296 143 +  51301725 -ccattttaaaa---ataatataaacaccaTAGCACTGTCACATCAGGAAAGTTAAGAGTACTTCCTTGATACTAGCTAAT-ACCCATTCAGTATTCAAATTTCCCTGATTGTCTCAAAAATGTCATTTCtatcaggcttttaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761661 143 +  50890351 -ccattttaaaa---ataatataaacactatagcactgtcacatcaggaaaatgaagggtacttccttgataccagctaac-acccattcagtattcaaatttccctgattgtctcaaaaatgtcgtttctatcaggcttttaaaaaa
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19563840 133 - 122678785 tctgttttaaaaaatatataataaccaccaaagcaatatcatagtagta--------------tctttgctaccatcgcataatccagtcagtatccatatttcctcaataatatcaaatatatt-cttcggtcagtttttttaaaaa
i canFam3.chr1              C 0 I 226
e ponAbe2.chr19              55866245  25 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=98561.000000
s hg38.chr19_GL949751v2_alt     56868 55 +   1002683 taaatcaggatccaataaaagtctacagattgcatttgataattatgtTAATTTA
s panTro4.chr19              58990641 55 +  63644993 taaatcaggatccaataaaagtctgcagattgcatttgataattatgtTAATTTA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102626682 55 - 106955855 taaatcaggatccaattaaagtctgcagattgcatttaataattatgtTAATTTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59914572 55 +  64156825 taaatcagaatccaattaaagtctgcagattgaatttgataattatgtTAATTTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54934023 55 +  59248254 taaatcagaatccaattaaagtctgcagattgaatttgataattatgttaattta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47050439 55 +  51301725 taaagcagaatccAATTAAAGTCTGCAGATTGAATTTGATAATTATGTTAATtta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761804 55 +  50890351 taaatcagaatccaattaaagtctgcagattgaatttgataattatgtTAATTTA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19563973 226 - 122678785 I
e ponAbe2.chr19              55866245 25 +  60714840 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=10948.000000
s hg38.chr19_GL949751v2_alt     56923 4 +   1002683 gcct
s panTro4.chr19              58990696 4 +  63644993 gcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55866270 4 +  60714840 gcct
i ponAbe2.chr19             I 25 C 0
s nomLeu3.chr10             102626737 4 - 106955855 gcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59914627 4 +  64156825 gcct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54934078 4 +  59248254 gcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47050494 4 +  51301725 gcct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761859 4 +  50890351 gcct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19563973 226 - 122678785 I
e calJac3.chr22              45321063 9366 +  49145316 I

a score=830598.000000
s hg38.chr19_GL949751v2_alt     56927 292 +   1002683 ggcgcagtggctcatgcctgtaatcccaacactttgggagaccggggcaggtagataacctgaggtcaggagttcgagaccagcctggccaaccatggtgaaacctcatctctactaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtaatcccagctactcaggaggctgaggcaggagaactgcttgaacctgggaggcaaaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaac-agagtgagactcagtct--caaaaaaaaaaaaaa
s panTro4.chr19              58990700 292 +  63644993 ggcgcagtggctcacacctgtaatcccaacactttgggagaccagggcaggtagataacctgaggtcaggagttcgagaccagcctggccaaccatggtgaaagctcatctttactaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtaatcccagctactcgggaggctgaggcaggagaactgcttgaacctgggaggcaaaggttgcagtgagctgagatcgcatcattgcactccagcctgggcaat-agagtgagactcagtct--caaaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55866274 291 +  60714840 ggcacagtggctcacgcctgcaatcccaacactttgggagaccgaggtaggtagataacctgaggtcaggagttcgagaccagcctggccaaccatggtgaaacctcatctctactaaaaatacaaaaattagctgggtgtggtggtgcacacctgtaatcccagctactcgggaggctgaggcaggagaactgcttgaacctggcaggcaaa-gttgcagcgagccgagatcgcaccattgcactccagcctgggcaac-agagtgagactcagtct--caaaaaaaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102626741 292 - 106955855 ggcacagtggctcattcctgtaatcccaacactttgggagaccgaggcaggtagatcacctgaggtcaggagttcgagaccagcctggccaaccatggtgaaacatcatctctactaaaaatacaaaaattagctgggtgtggtggtgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcaaaggttgcagtgagctgagatcgcatcattgcactccagcctgggcaac-agagcgagactctgtat--caaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59914631 286 +  64156825 ggcgcagtggctcatgcctgtaatcccaacactttgggagaccgaagcaggtagatcagctaaggtcaggagttcaagaccagcctggccaa-catggtgaaacctcgtctctactagaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctagtcgtgagggtgaggcagaagaactgcttgaacctgggaggcgaaggttgcagtgagctgagatcgcaccattgcactccagcctaggcaac-agagagagtctc-------aaaaaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54934082 293 +  59248254 ggcgcagtggctcatgcctgtaatcccaacactttgggagaccgaagcaggtagatcagctaaggtcaggagttcaagaccagcctggccaa-catggtgaaacctcgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctagtcgtgagggtgaggcagaagaactgcttgaacctgggaggcgaaggttgcagtgagctgagatggcaccattgcactccagcctaggcaac-agagagagactctgtctcaaaaaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47050498 291 +  51301725 ggcgcagtggctcatgcctgtaatcccaacactttgggagaccaaagcaggtagatcacctaaggtcaggagttcgagaccagcctggccaa-catggtgaaacctcgtctctactaaaaatacaaaaattagctgggcatggtggtgcacacctgtaatcccagctagtcatgaggctgaggcagaagaactgcttgaacctgggaggcgaaggttgcagtgggctgagatcgcaccattgcaccccagcctgggcaac-agagagagactccgtct--caaaaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46761863 291 +  50890351 ggcacagtggctcatgcctgtaatcccaacactttgggagaccgaagcaggtagatcacctaaggtcaggagttcgagaccagcctggccaa-catggtgaaacctcgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctagtcgtgaggctgaggcagaagaactgcttgaacctgggaggcgaaggttgcagtgagctgagatcgcaccattgcactccagcctaggcaac-agagagagactctgtct--caaaaaaaaaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45330429 289 +  49145316 ggtgcggtggctcatgcctgtaatcccagcactttgagaggtggacgcagatggatcacctgaggtcgggagttcgagaccagcctgacgaa-cat--caaacccccgtctctactaaaaaca-gaaaattagctggacgtggtggcgcgtgcctgtagtcccagctactctggaggctgaagcaggagaatctcttgaacccaggaggcggaggttgcggtgaaccgagatcgcgccattgcactccagcctgggcaacaagggcaaaactccgtct--caaaagcaaaaaaag
i calJac3.chr22             I 9366 C 0
e canFam3.chr1               19563973 226 - 122678785 I

a score=-507.000000
s hg38.chr19_GL949751v2_alt     57219 2 +   1002683 -aa
s panTro4.chr19              58990992 1 +  63644993 -a-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55866565 2 +  60714840 -aa
i ponAbe2.chr19             C 0 I 742
s nomLeu3.chr10             102627033 2 - 106955855 -aa
i nomLeu3.chr10             C 0 I 9
s rheMac3.chr19              59914917 2 +  64156825 -aa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54934375 2 +  59248254 -aa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47050789 2 +  51301725 -aa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46762154 2 +  50890351 -aa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45330718 2 +  49145316 -aa
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19564199 2 - 122678785 ga-
i canFam3.chr1              I 226 C 0

a score=-1309.000000
s hg38.chr19_GL949751v2_alt     57221 1 +   1002683 -a
s nomLeu3.chr10             102627044 1 - 106955855 -A
i nomLeu3.chr10             I 9 C 0
s rheMac3.chr19              59914919 1 +  64156825 -a
i rheMac3.chr19             C 0 I 11
s macFas5.chr19              54934377 1 +  59248254 -a
i macFas5.chr19             C 0 I 11
s papAnu2.chr19              47050791 1 +  51301725 -a
i papAnu2.chr19             C 0 I 11
s chlSab2.chr6               46762156 1 +  50890351 -a
i chlSab2.chr6              C 0 I 11
s calJac3.chr22              45330720 1 +  49145316 -a
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19564201 1 - 122678785 t-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55866567 742 +  60714840 I
e panTro4.chr19              58990993 0 +  63644993 C

a score=104318.000000
s hg38.chr19_GL949751v2_alt     57222 44 +   1002683 TGTTAATTTGAATCAGACAAAATTTTTTATTTTTTTGTTAAAAT
s panTro4.chr19              58990993 44 +  63644993 TGTTAATTTGAATCAGACaaaattttttatttttttgttaaaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55867309 44 +  60714840 TGTTAATTTGAATCAGACAAAATTTTTTACTTTTTTGTTAAAAT
i ponAbe2.chr19             I 742 C 0
s nomLeu3.chr10             102627045 44 - 106955855 TGTTAATTTGAATCAGACAAAATTTTTTATTTTTTTGTTAAAAT
i nomLeu3.chr10             C 0 I 299
s rheMac3.chr19              59914931 44 +  64156825 TGTTAATTTAAATCAGACAAAATTTTTGATTCGTTTGTTAAAAT
i rheMac3.chr19             I 11 C 0
s macFas5.chr19              54934389 44 +  59248254 tgttaatttaAATCAGACAAAATTTTTGATTCGTTTGTTAAAAT
i macFas5.chr19             I 11 C 0
s papAnu2.chr19              47050803 44 +  51301725 tgttaatTTAAATCAGACAaaatttttgatttgtttgttaaaat
i papAnu2.chr19             I 11 C 0
s chlSab2.chr6               46762168 44 +  50890351 CGTTAATTTAAATCAGACAAAATTTTTGATTTGTTTGTTAAAAT
i chlSab2.chr6              I 11 C 0
s calJac3.chr22              45330721  5 +  49145316 -----------------aaaga----------------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19564202 44 - 122678785 cgataGGCCAATTCAGACAAAATTCCCAATGTCTTTGTTAAAAT
i canFam3.chr1              C 0 C 0

a score=425756.000000
s hg38.chr19_GL949751v2_alt     57266 140 +   1002683 AAGAAATCAAGCAAGTT---AGTTTTTAACCATGTTTTTTTTCATCTTGCATTTGGAAGAAGAGCAAAATGCCCCGAAGTCTCGTTTTTGTTTTCGGA-TTTTTTGTCTTGATAGCACCTACTCTTCTTACTGTTTTGGAACAT
s panTro4.chr19              58991037 140 +  63644993 aaGAAATCAAGCAAGTT---AGTTTTTAACCATGTTTTTTTTCATCTTGCATTTGGAAGAAGAGCAAAATGCCCCCAAGTCTCGTTTTTGTTTTCAGA-TTTTTTGTCTTGATAGCACCTACTCTTCTTACTGTTTTGGAACAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55867353 140 +  60714840 AAGAAATCAAGCAAGTT---AGTTTTTAACCATGTTTTTTTTCATCATGCATTTGGAAGAAGAGCAAAATGCCCCCAAGTCTTGTTTTTGTTTTCGGA-TTTTTTGTCTTGATAGCACTTACTCTTCTTACTGTTTTGGAACAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102627388 141 - 106955855 aagaaaTCAAGCAAGTT---AGTTTTTATCCATGTTTTTTTTCATCATGCATTTGGAAGAAGAGCAAAATGCCCCCAAGGCTTGTTTTTGTTTGCGGATTTTTTTGTCTTGATAGCACCTACTCTTCTTACTGTTTTGGAACAC
i nomLeu3.chr10             I 299 C 0
s rheMac3.chr19              59914975 139 +  64156825 AAGAAATCAAGCAAGTT---GGTTTTTAACCATG-TTTTTTTCATCATGCATTTGGAAGAAGAGCAAAATGACCCCAAGGCTTGTTTTGGTTTTCGGA-TTTTTTGTCTTGATAGCACCTACTCTTCTTACTGTTTTGGAACAT
i rheMac3.chr19             C 0 I 322
s macFas5.chr19              54934433 139 +  59248254 AAGAAATCAAGCAAGTT---GGTTTTTAACCATG-TTTTTTTCATCATGCATTTGGAAGAAGAGCAAAATGACCCCAAGGCTTGTTTTGGTTTTCGGA-TTTTTTGTCTTGATAGCACCTACTCTTCTTACTGTTTTGGAACAT
i macFas5.chr19             C 0 I 325
s papAnu2.chr19              47050847 139 +  51301725 aagaaatcaagCAAGTT---GGTTTTTAACCATG-tttttttCATCATGCATTTGGAAGAAGAGCAAAATGACCCCAAGGCTTGTTTTGGTTTTCGGA-TTTTTTGTCTTGATAGCACCTACTCTTCTTACTGTTTTGGAACAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46762212 140 +  50890351 AAGAAATCAAGCAAGTT---GGTTTTTAACCATGTTTTTTTTCATCATGCATTTGGAAGAAGAGCAAAATGACCCCAAGGTTTGTTTTGGTTTTCGGA-TTTTTTGTCTTGATAGCACCTACTCTTCTTCCTGTTTTGGAACAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45330726 131 +  49145316 gaaaGATCAAGTC--TT---GGGTTTTAACTATG-TTTTCTCCATCACGCATTTGGGAGAAGAGCAAGATG-CCCCAAAGCTTGTTTTTGTTTTCGGA-TCTTCTGTCTCGGTAGT-----CTCTTCTTACTGCTTTGGAACAC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19564246 120 - 122678785 AAGAAGCCAAGCACATCATAGGTTTTT----ATGATTTTTTCCACCATTAATTTGGAAGAAAAGCAACATGCCCCTGAG--------------------ACTATTGTCTTGACAGAGCTTACTTATCTTTCTGTTCAGTAATAT
i canFam3.chr1              C 0 C 0

a score=368490.000000
s hg38.chr19_GL949751v2_alt     57406 105 +   1002683 AGAAAAGTCAACAAGGCAACAAATTA-TAAGGAGTAAAACCAACTATAATTACAGGTGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
s panTro4.chr19              58991177 105 +  63644993 AGAAAAGTCAACAAGGCAACAAATTA-TAAGGAGTAAAACCAACTATAATTACAGGTGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55867493 105 +  60714840 AGAAACGTCAACAAGGCAACAAATTA-TAAGGAGTAAAACCAACTATAATTACAGGTGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATAATTTTTAAAGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102627529 105 - 106955855 AGAAAAGTCAACGAGGCAACAATCTG-TAAGGAGTAAAACCAACTATAATTACAGGTATTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59915436 105 +  64156825 agaaaAGTCAACAAGGCAACAAATTA-TAAGGAATAAAACCAACTATAATTACAGATGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
i rheMac3.chr19             I 322 C 0
s macFas5.chr19              54934897 105 +  59248254 aGAAAAGTCAACAAGGCAACAAATTA-TAAGGAATAAAACCAACTATAATTACAGATGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
i macFas5.chr19             I 325 C 0
s papAnu2.chr19              47050986 105 +  51301725 AGAAAAGCCAACAAGGCAACAAATTA-TAAGGAATAAAACCAACTATAATTACAGGTGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46762352 105 +  50890351 AGAAAAGTCAACAAGGCAACAAATTA-TAAGGAATAAAACCAACTATAATTACAGATGTTTCTTTGAAAGTTATTTTCACAAGATGTGGCAATGATTTTTAAAGGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45330857 105 +  49145316 AGAAGAGTCAACGAGACGACCAGTTC-TGACGGAGTAAAGCAATTACAATCTCAGGTGCTTCTTTGAGAGTGATTTTCACAGGATGTGGCCATGATTTTTCAAGGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19564366 106 - 122678785 AGAAAAATCAACAAGGCAACGAATTATTGGGGAGAGAAACCAATTATAATCACAGGAGTTTCTTTGAGGGTGATCTCCAAAAGATATGGCAATGATTTTTAAAGTC
i canFam3.chr1              C 0 I 210

a score=601735.000000
s hg38.chr19_GL949751v2_alt     57511 175 +   1002683 TTGGGACTCTTACAAGACCCTTTTGTTCAAATAACAGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAATGTTTGTGAA-TATTCATTTAGTTCTCCATATTGTACCAGAAAACAAGACTGATATTCTTGTGAATCTTCTCAATTCAACTCTTTATCAAATCAGATT
s panTro4.chr19              58991282 175 +  63644993 TTGGGACTCTTACAAGACCCTTTTGTTCAAATAACAGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACGTTTGTGAA-TATTCATTTAGTTCTCCATATTGTACCAGAAAACAAGACTGATATTCTTGTGAATCTTCTCAATTCAACTCTTTATCAAATCAGATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55867598 175 +  60714840 TTAGGACTCTTACAAGACCCTTTTGTTCAAATAATGGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACAGTTGTGAA-TATTCATTTAATTCTCCATATTGTACCAGAAAACAAGATTGATATTCTTGGGAATCTTCTTAATTCAACATTTTATCAAATCAGATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102627634 175 - 106955855 TTGGGATTCTTATAAGATTCTTTTGTTCAAATAACAGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACAGTTATAAA-TATTCATTTAATTCTCCATATTGTACCAGAAAACAAGATTGATATTCTTGGGAATCTTCTCAATTCAACACTTTATCAAATCAGATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59915541 175 +  64156825 TTGGGACTCTTAGAAGACCCTTTTGTTCAAATAACAGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACAGTTATGAA-TATTCATTTAATTCTCCATATTGTACCAGAAAACAAGATTGATATCCTTGGGAATCTTCTCAATTCAACACTTTATCAAATCAGATT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54935002 175 +  59248254 TTGGGACTCTTAGAAGACCCTTTTGTTCAAATAACATTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACAGTTATGAA-TATTCATTTAATTCTCCATATTGTACCAGAAAACAAGATTGATATCCTTGGGAATCTTCTCAATTCAACACTTTATCAAATCAGATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47051091 175 +  51301725 TTGGGACTCTTACAAGACCCTTTTGTTCAAATAACAGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACAGTTATgaa-tattcatttaattctccATATTGTACCAGAAAACAAGATTGATATCCTTGGGAATCTTCTCAATTCAACACTTTATCAAATCAGATT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46762457 175 +  50890351 TTGGGACTCTTACAAGACCCTTTTGTTCAAATAACAGTTT--TGTGTATGAATTTATTTCAAC-----AGAGAACAATTTAGTAACAGTTATGAA-TATTCATTTAATTCTCCATATTGTACCAGAAAACAAGATTGATACCCTTGGGAATCTTCTCAATTCAACACTTTATCAAATCAGATT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45330962 181 +  49145316 TTGGGACTCTTACAAGACCCTTTTGTTC-AATGACAGTTTTCTATGCATGAATTTATTTCAACAGAGAAGAGAACAATTTAGCAACCGTCATGAA-TATTCATGTAATTCTCCATATTGTACCAGAAAACAAGATTGATATTCTTGGGAATCTTCTCAATTCAACACTTTATCAAATCTGATT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19564682 172 - 122678785 TTGAGATTCTTATGAGACCCTTTTGTTTAAATAACACTTC--TCTGTGTAGATTTATTTCAACAGAGTAGAGAACAATATAGTAAA----ATGAATTATTTATGTGATTCTCCTAATTGCACC-GGAAACAACACTGATACTTTTGGCAAAGCTTTCACCTCAACACTTT----AATCAgatt
i canFam3.chr1              I 210 I 888

a score=1545861.000000
s hg38.chr19_GL949751v2_alt     57686 539 +   1002683 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGGAAAAGAGGACATCTCCTATATTTCTTCTTAACATCTCTGTTGCTAACAAGGAATATGCATATTTTAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAAGGCCTGGTAAAGTTCCATTCCACTTGGAAATGAAGAAAGGA--------GACCCTGATTCAAAAAACGAA--AAAAG----------------------------------------------------------------------AAAGAATAAAGAATAGCTTAGggccaggcaaggtggatcacacctgtaatcctaagattttgggagg-tgaggtaggtggaaggcttgatcccaggagttcaacaccagcctgggcaacatggcctaatcccatctctacaaaaaatac-aaaaattagccaggcttggtggtatatacctgtaatcccagcttctcaggaggctgaggtgggagaatcacttgaacctgggagggggaggtggcagtgagctgagatcgcaccattgtaccc---cagcctgggcaacaagagtgaaactccatctcaaaa---aataataa
s panTro4.chr19              58991457 542 +  63644993 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGGAAAAGAGGACATCTCCTATATTTCTTCTTAACATGTCTTTTGCTAACAATGAAGATGCATATTTTAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAAGGCCTGGTAAAATTCCATTCCACTTGGAAATGAAGAAAGGA--------GACCCTGATTCAAAAAACGAA--AAAAG----------------------------------------------------------------------AAAGAATAAAGAATAGCTTAGggccaggcaaggtggatcacacctgtaatcctaagattttgggagg-tgaggtaggtggaaggcttgatcccaggagttcaacaccagcctgggcaacatggcctaatcccatctctacaaaaaatac-aaaaattagccaggcttggtggtatatacctgtaatcccagcttctcaggaggctgaggtgggagaatcacttgaacctgggagggggaggttgcagtgagctgagatcgcaccattgcaccc---cagcctgggcaacaagagtgaaactccatctcaaaaaataataataa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55867773 542 +  60714840 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGAAAAAGAGGACATCTCCTATATCTCTTCTTAACATCTCTTTTGCTAACAATGAAGATGCATATTTTAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAAGGCCTGGTAAAGTTCCATTCTGCTTAGAAATGAAGAAAAGA--------GACCCTGATTCAAAAAACAAA--AAAAG----------------------------------------------------------------------AAAGAATAAAGAATAGCTTAGggccaggcaaggtggatcacacctgtaatcctaagattttgggagg-tgaggtaggtggatggcttgatcccaggagttcaacatcagcctggacaacatggcctaaccccatctctacaaaaaatac-aaaaattagccaagtgtggtggtgcacacctgtaatcccagctactcaggaggctgaggtggaagaatcgcttgaacctgggagggggaggttgcagtgagctgagattgcaccattgcactc---cagcctgggcaacaagagtgaaactccatctctaataataataataa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102627809 544 - 106955855 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGAAAAAGAGGACATCTCCTATATCTCTTCTTAACATCTCTTTTGCTAACAACGAAGATGCCTATTTTAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAAGGCCTAGTAAAGTTCCATTCCACTTAGAAATGAAGAAAGGA--------GACCCTGATTCAAAAAACAAAACAAAAC----------------------------------------------------------------------AAAGAATAAAGAATAGCTTAGggccaggcagggtggatcatacctgtaatcctaagatttcgggagg-tgaggtaggtggatggcttgatcccaggagttcaacaccagcctgggcaacatggcctaaccccatctctacaaaaaatac-aaaaattagccgggtttggtggtgcatacctttaatcccagcttctcaggaggctgaggtgggagaatcgcttgaacctgggagggggagattgcagtgagctgagatcacaccattgcgccc---cagcctgggcaacaagagtgaaactccatctcaaaaaataataataa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59915716 540 +  64156825 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGAAAAAGAGGATATCTCCTATATCTCTTCTTAACATCTCTTTTGCTAACAATGAAGATGCATATTTGAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAAAATCTGGTAAAGTTCTATTTCACCTAGAAATGAAGAAAGGA--------GACCCTGATTCAAAAAACAAA--AAAAG----------------------------------------------------------------------AAAGAATAACGAATAGCTTAGggccaggtaaagtggatcacacctgtaatcctaacattttgggagg-tgaggtaggtggatggcttgatcccaggagttcaacactagcctgggcaacatggcctaaccccatctctacaaaaaatac-aaaaattagccaggcatggtggtgcaaacctgtaatcccagctactcaggaggctgaggtgggagaattgcttgaacctgggatgtggaggttgcagtgagccgagattgcaccgttgcactc---cagcctgggcaacaagagtgaaactccatctcaaaaaataatagt--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54935177 540 +  59248254 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGAAAAAGAGGATATCTCCTATATCTCTTCTTAACATCTCTTTTGCTAACAATGAAGATGCATATTTGAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAAAATCTGGTAAAGTTCTATTTCACCTAGAAATGAAGAAAGGA--------GACCCTGATTCAAAAAACAAA--AAAAG----------------------------------------------------------------------AAAGAATAACGAATAGCTTAGggccaggtaaagtggatcacacctgtaatcctaacattttgggagg-tgaggtaggtggatggcttgatcccaggagttcaacactagcctgggcaacatggcctaaccccatctctacaaaaaatac-aaaaattagccaggcatggtggtgcaaacctgtaatcccagctactcaggaggctgaggtgggagaattgcttgaacctgggatgtgaaggttgcagtgagccgagattgcaccgttgcactc---cagcctgggcaacaagagtgaaactccatctcaaaaaataatagt--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47051266 542 +  51301725 CCTTAAATTAGTGTTGTGactcagaaaaaaatctttctccTTATGCAGTATCAGGAAAAAGAGGATATCTCCTATATCTCTTCTTAACATCTCTTTTGCTAACAATGaagatgcatattttaaaactaggCTCTGGAATTTTATCAGTCAACAGGAAAAATCTGGTAAAGTTCTATTTCAcctagaaatgaagaaagga--------gaccctgattcaaaaaacaaa--aaaag----------------------------------------------------------------------aaagaataatgaatAGCTTAGGGCCAGGTaaagtggatcacacctgtaatcctaacattttgggagg-tgaggtaggtggatggcttgatcccaggagttcaacactagcctgggcaacatggcctaaccccatctctacaaaaaatac-aaaaattagccaggcatggtggtgcaaacctgtaatcccagctactcaggaggctgaggtgggagaatcgcttgaacctgggatgtggaggttgcagtgagccgagattgcaccgttgcactc---cagcctgggcaacaagagtgaaactccatctcaaaaaataataata-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46762632 543 +  50890351 CCTTAAATTAGTGTTGTGACTCAG-AAAAAATCTTTCTCCTTATGCAGTATCAGGAAAAAGAGGATATTTCCTATATCTCTTCTTAACATCTCTTTTGCTAACAATGAAGATGCATATTTTAAAACTAGGCTCTGGAATTTTATCAGTCAACAGGAAATATCTGGTAAAGTTCTATTTCACCTAGAAATGAAGAAAGGA--------GACCCTGATTCAAAAAACAAA--AAAAG----------------------------------------------------------------------AAAGAATAACGAATAGCTTAGggccaggtaaagtggatcacacctgtaatcctaacattttgggagg-tgaggtaggtggatgacttgatcccaggagttcaacactagcctgggcaacatggcctaaccctatctctacaaaaaatac-aaaaattagccaggcatggtggtgcaaacctgtaatcccagctactcaggaggctgaggtgggagaatcgcttgaacctgggatgtggaggttgcagtgagccgagattgcactgttgcactcttgttgcctgggcaacaagagtgaaactccatctcaaaaaataataat--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45331143 615 +  49145316 CCTTAAATTAGGGTTGTGACTCAG-AAAAAATCTTCCTCCTTATGCAGTATCAGGAAAAAGAGGACATCTCCTGTATCTCTATTTAACATCTCTTTTGCTAACGGTGAAGATGTATATTTTAAAACTAGGCACTGGAATTTTATCAGTCAACAGAAACGCCCTGGTAAAGTTCCATTCCAGTTAGAAATGAAGGAAGGACTGAGCTGgactccgtctcaaaaaaaaaa--aaaaaaaaagaaagaaaaaagaaaTGAAGGAATAAATAGGAtttttttttttttttttttttGAGACCCTGATTCAAAAAATAAAGAATAGCT--Gggtcgggcgcggtggctcaggcctataatcccagcactttgggaggccgaggcgggtggatcacgaggt--caagagatcgagaccatcctggtcaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggtggcgcgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgccgtgagccgagatcgcgccattgcactc---cagtctgggtaacgagagtgaaactctgtctcaaaaaaaaaaaa---
i calJac3.chr22             C 0 I 716
e canFam3.chr1               19564854 888 - 122678785 I

a score=117675.000000
s hg38.chr19_GL949751v2_alt     58225 57 +   1002683 taa-------------aataa-ataaataaaTAATCATTCACTTTGTTAGGTGTTTATCACACCTAACCTT
s panTro4.chr19              58991999 57 +  63644993 taa-------------aataa-ataaaTAAATAATCATTCACTTTGTTAGGTGTTTATCACACCTAACCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55868315 71 +  60714840 taataataataataataataataTAAATAAATAATCATTCACTTTGTTAGGTGTTTATCACACCTAACCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102628353 56 - 106955855 t---------------aataaaataaataaATAATCATTCACTTTGTTAAGTGTTTATCACACCTAACCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59916256 50 +  64156825 --------------------a-ataaataaaTAGTCATTCACTTTGTTAGGTGTTTATCACACCTAACCTT
i rheMac3.chr19             C 0 I 239
s macFas5.chr19              54935717 50 +  59248254 --------------------a-ataaataaaTAGTCATTCACTTTGTTAGGTGTTTATCACACCTAACCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47051808 54 +  51301725 ----------------aataa-ataaataaatagtcattCACTTTGTTAGGTGTTTATCACACCTAACCTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46763175 54 +  50890351 ----------------aataa-ataaataaataaTCATTCACTTTGTTAGGTGTTTATCACACCTAACCTT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I

a score=2548.000000
s hg38.chr19_GL949751v2_alt     58282 1 +   1002683 A
s panTro4.chr19              58992056 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55868386 1 +  60714840 A
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102628409 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59916545 1 +  64156825 a
i rheMac3.chr19             I 239 C 0
s macFas5.chr19              54935767 1 +  59248254 A
i macFas5.chr19             C 0 I 238
s papAnu2.chr19              47051862 1 +  51301725 A
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46763229 1 +  50890351 A
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I

a score=15504.000000
s hg38.chr19_GL949751v2_alt     58283 8 +   1002683 AGAATATG
s panTro4.chr19              58992057 8 +  63644993 AGACTATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55868387 8 +  60714840 AGAATATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102628410 8 - 106955855 AGAATATG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59916546 8 +  64156825 agaaTATC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54936006 8 +  59248254 agaaTATC
i macFas5.chr19             I 238 C 0
s papAnu2.chr19              47051863 8 +  51301725 AGAATATC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46763230 8 +  50890351 AGAATATC
i chlSab2.chr6              C 0 I 234
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I

a score=17599.000000
s hg38.chr19_GL949751v2_alt     58291 8 +   1002683 TTACCAAA
s panTro4.chr19              58992065 8 +  63644993 TTACCAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55868395 8 +  60714840 TTACCAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102628418 8 - 106955855 CTACCAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59916554 8 +  64156825 TTACCAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54936014 8 +  59248254 TTACCAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47051871 8 +  51301725 Ttactaga
i papAnu2.chr19             C 0 I 1727
s chlSab2.chr6               46763472 8 +  50890351 TTACTAAA
i chlSab2.chr6              I 234 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I

a score=2181526.000000
s hg38.chr19_GL949751v2_alt     58299 1306 +   1002683 ATAAAAAGTCttatagatgaaatcatattatatctgaggtttactttaaaatactccaggagaaaatttaaaatagacttgggggAGGGGACTTATCTGTAGTTATCTGCACATAATCTACATGATTATCTCAAAGCCATCCTTTTGCTGTTGAGAATTctgatttttagctgggcccattggcacccaggtaaaaaa-ctacattcttcagtgtcacttacaggtagatgtagccgtaagtcttcatctaggacaatgataaataagcataaatattgtagacagcttccaaaaggttctttaatgaagtacactttccttccttcacttaactgcctaaaatgtggatgtgatgactggtattctagcgtcatcttgaaccatgaagatgagatgaggttcaagatggtggagggtgagccagaagtaacttaggtccataatgctttttggagtcactgtgccagccttggactgctcccttcagatttattctacataagggagaaatcaattggtattagttttaagtcatcattatttagttctctTTTGGgtttaggttatcaattactgtgttaacaaaccaccccaaaactgagtaacttagagtaacaatcttg-----tttttttttttttttaatcattcctgatctggtgagatgactgggctcagttgagcggttcttcggttcaatgtgatgtcttcctgggcttcagtcatcagggtggctcaactgagctggaatctccaagatggcacttgcaaatggctggctgttgatgctggatgttggttgaaagctcggctaggactgttgaatgatgtacctgcacatggcctctccatttgattcagacttcttggaggatagcatctgggtttcaagaggggatgtcacaagagagctttctaaaatagagaaggcggctgggcatggtggctcacgtctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcaacatcagcctggccaacatggtaaaaccccgtctctactaaaaacaaaat-----------------------------------------taaa---aaaaattagccgg-------------------------------------------------------gtgtgtttgtgcacacctgtaatcccagctactcaggaggccgaggcaggagaattgcttgaacctgggagg-cggaagttgcagtgagccgagatcacaccact--------gcactccagcctgggcaacagaatgagactctgtc-tcaa----ataaataaataaataaataaaataaagaaggcaaaagttgtttgtccctttaaagactaagcctggaactgacacagtttctcttcttc
s panTro4.chr19              58992073 1309 +  63644993 ATAAAAAGTCttatagatgaaatcatattatatctgaggtttactttaaaatactccagcagaaaatttaaaatagacttgggggAGGGGACTTATCTGTAGTTATCTGCACATAATCTACATGATTATCTCAAAGCCATCCTTTTGCTGTTGAGAATTctgatttttagctgggcccattggcacccaggtaaaaaa-ct--attcttcagtgtcacttacaggtagatgtagccgtaagtcttcatctaggacgatgataaataagcataaatattgtagacagcttccaaaaggttctttaatgaagtacactttccttccttcacttaactgcctaaaatgtggatgtgatgactgatactctagcgtcgtcttgaaccatgaagatgagatgaggttcaagatggtggagggtgagccagaagtaacttaggtccataatgctttttggagtcattgtgccagccttggactgctcccttcacatttattctacataggggagaaatcaattggtattagttttaagtcatcattatttagttctctTTTGGgtttaggttatcaattactgtgttaacaaaccaccccaaaactgagtaacttagagtaacaatcttgttttttttttttttttttttaatcattcctgatctggtgagatgactgggctcagttgagcggttcttcggttcaatgtgatgttttcctgggcttcagtcatcagggtggctcaactgagctggaatctccaagatggtgcttgcaaatggctggctgttgatgctggatgttggttgaaagctcggctaggactgttgaatgatatacctgcacatagcctctccatttgattcagacttcttggaggatagcatctgggtttcaagaggggatgtcacaagagagctttctaaaatagaaaaggcggctgggcatggtggctcacatctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcaacatcagcctggccaacatggtaaaaccccatctctactaaaaataaaat-----------------------------------------taaa---gaaaattagcggg-------------------------------------------------------gcgtgttggtgcacacctgtaatcccagctactcaggaggccaaggcaggagaattgcttgaacctgggagg-cggaagttgcagtgagccgagatcacaccact--------gcactccagcctgggcaacagaatgagactctgtc-tcaa----ataaataaataaataaataaaataaagaaggcaaaagttgtttgtccctttaaagactaagcctggaactgacacagtttctcttcttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55868403 1308 +  60714840 ATAAAAAGTCTTACAGATGAAATCATACTATATCTGAGGTTTACTTTAAAATACTCCAGCAGAAAATTTAAAATAGACTTGGGTGAGGGGACTTATCTATAGTTATCTGCACATAATCTACATGATTATCTCAAAGCCATCCTTTTGCTGTTGAGAATTctgaattttagctgggcccattgccacccaggtaaaaaa-ctacattcttcaacgtcacttacaggtagatgtagccgtaagtcttcatctaggacaatgacatataagcataaatattgcagacagcttccaaaagattctttaatgaaatacgctttctttccttcacttaactgcctaaaatgtggatgtgatgactgatactctagcgtcatcttgaaccatgaagatgagatgacgttcaagatggcggagggtgaaccagaagtaacttaggtccataatgctttttggagtcattgtgccagccttggactgctcccttcagatttattctacataggggagaaatcaattggtattagttttaagtcatcattatttagttctctTTTGGgtttaagttatcaattactgtgttaacaaaccaccccaaaactgagtaacttagagcaacaatcttgtgttttttttttttttttttaatcattcctgatctggtgagatgactaggctcagttgagcggttcttcagctcaatgtgatgtcttcctgggcttcagtcatcaaggtggctcaactgagctggaatctccaagatggcgcttgcaaatggctggctgttgatgctggatgttgattgagagcttggctaggactgttgaatgatgtacctgcacatggcctctccatttgattcagacttcttggaggatagcatctgggtttcaagaggggatgtcacaagagagctttctaaaatagagaaggtggctgggcacggtggctcacgcctctaatcccagcactttgggaggccgaggtgggtggatcacttgaggtcaggagttcaacatcagcctggccaacatggtaaaaccctgtctctactaaaaataaaat-----------------------------------------ttaa---aaaaattagctga-------------------------------------------------------gcatgttggtgcgcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggagg-cagaagttgcagtgagccgagatcacaccact--------gcactccagcctgggtgacagaatgagactctgtc-tcaa------aaataaataaataaat-aaataaataaggcaaaagttgtttgtctctttaaagactaagcctgtaattgacacagtgtctcttcttc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102628426 1289 - 106955855 ATAAAAAGGCttatagattaaatcatattatatctgaggtttactttaaaatactccagcagaaaatttaaaatagacttgggggAGGGGACTTATCTGTAGTTATCTGCACATAATCTACATGATTATCTCAAAGCCATCCTTTTGCTGTTGagaattctgacttttagctgggcccattggcacccaggtaaaaaa-ctacattcttcaatgttacttacaggtagatgtaaccgtaagtcttcatctaggacaatgatatataag----aatattgtagacagcttccaaaaggttctttaatgaagtacactttccttccttcatttaactgcctaaaatgtggatgtgatgactgatactctagcgtcatcttggaccatgaagatgag-----gttcaagatggtggggggtgagccagaagtaacttaggtccataatgctttttagagtcattgtaccagccctggactgctcccttcagatttattctacataggggagaaatcagttggtgttagttttaagtcatcattatttagttctctCTTGGAtttaggttatcaattactgtg-taacaaaccaccccaaaactgagtgacttagagtaacaatctt------tttttttttttttttaatcattcctgatctggtgagatgactgggctcagctg-gcggttcttcagctcaatgtgatgtcttcctgggcttcagtcatcagggtggctcaactgagctggattctccaagatggcacttgcaaatggctggctattgatgctggatgttggttgagagttcggctaggactgttgaatgatgtatctgcacatggcctttccatttgattcaaacttcttggaggatagcttctgggtttcaagaggggatgtcataagaaagctttctaaaatagagaaggcagctgggcatggtggctcacgtctgtaatcccagcactttgggaggccgaggtgggtggattacttgaggtcaggagttcaacattagcctggccaacatggtgaaaccctgtctctactaaaaata-----------------------------------------------------aaaattagccgg-------------------------------------------------------gtgtgttggtgcacacctgtaatcccagctactcaggaggccgaggcaggagaattgcttgaacctgggagg-cggaggttgcagtgagctgagatcacaccact--------gcactccagcctgggcgacagaatgagactctgtc-tcaaataaataaataaataaataaataaaataaagaaggcaaaagttgtttgtccctttaaagactaagcctggaactgacacagtgtctcttcttc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59916562 1309 +  64156825 ATAAAAAGTCttgtagatgaaatcatattatatctgaggtttactctaaaatactccagcagaaaatttaaaatagacttgggggAGGGGACTTACCTGTAGTTATCTGCACATAATCTACATGATTACCTCAAAGCCATCCTTTTGCTGTTGagaattctgatttttagctgggcccattgctacccaggtaaaaaagctactttcttcaatgtcacttacagatagatgtagctgtaagtcttcatctaggacaatgatatataagcataaa---tgtagacagcttccaaaagattctttaatgaagtacactttccttccttcacttaactgcctaaaatgtggatgtgatgactgatactctagcatgatcttggaccatgaagatgag-----gttcaagatggtggagggtgagccacaagtaacttaggtccataatgctttttagagtcattgtgccagccctggaccgct------agatttattctacataggggagaaatcaattggtattggttttaagtcatcattatttAATTCTCTCTTGGGTATAgattacccattactgtg-taacaaaccaccccaaaactgagtgacttagggtaacaatc---------ttttttttttttttaatcattcctgatctggtgagatgactgggctcagttgagcagttcttcggctcaatgtgatatcttcctgggcttcagtcatcagtggggctcagctgagctggaatctccaag-------------atggctggctgttgatgctggatgttggttgagagctcagctaggactgttgaatgatgtacctgcacatggcctctccatttgattcagacttcttggagggtagcatctgggtttcaagaggggatgtcacaagagagctttctaaaatagagaaggcagccgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaacatcagcctggccaacatgaggaaacatcatctctactaaaaaaaaaaa------------------------------------------------taaaattagccagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn----------------------tcccagctactcaggaggctgaggcaggagaatcacttgaacctggggggacagaggctgcaatgtgctgagattaagccactgcactccagcactccagcctgagtgacagagcaaga---tgtcttgaa------aaaaaaaaaaaaaagagagagagagaaggcaaaagttgtttgtccctttaaagactaagcctggaactgacacagtgtctcttcttc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54936022 1313 +  59248254 ATAAAAAGTCTTGTAGATGAAAGCATATTATATCTGAGGTTTACTCTAAAATACTCCAGCAGAAAATTTAAAATAGACTTGGGGGAGGGGACTTACCTGTAGTTATCTGCACATAATCTACATGATTACCTCAAAGCCATCCTTTTGCTGTTGAGAATTctgatttttagctgggcccattgctacccaggtaaaaaagctactttcttcaatgtcacttacagatagatgtagctgtaagtcttcatctaggacaatgatatataagcataaa---tgtagacagcttccaaaaggttctttaatgaagtacactttccttccttcacttaactgcctaaaatgtggatgtgatgactgatactctagcatgatcttggaccatgaagatgag-----gttcaagatggtggagggtgagccacaagtaacttaggtccataatgctttttagagtcattgtgccagccctggaccgct------agatttattctacataggggagaaatcaattggtattggttttaagtcatcattatttAATTCTCTCTTGGGTATAgattaccaattactgtg-taacaaaccaccccaaaactgagtgacttagggtaacaatc--------tttttttttttttttaatcattcctgatctggtgagatgactgggctcagttgagcagttcttcggctcaatgtgatatcttcctgggcttcagtcatcagtggggctcaactgagctggaatctccaag-------------atggctggctgttgatgctggatgttggttgagagctcagctaggactgttgaatgatgtacctgcacatggcctctccatttgattcagacttcttggagggtagcatctgggtttcaagaggggatgtcacaagagagctttctaaaatagagaaggcagccgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaacatcagcctggccaacatgaggaaacatcatctctactaaaaaaaaaaa-----aaaattagccaggcggaaccctgtctctactaaaattaaaaataaaaattagccag-------------------------------------------------------gcatgttggtgcacacctgtaatcccagctactcgggaggccgaggcaggagtattgcttaaacctgggagg-cagaggttgcagtgagccgagataacaccagt--------gcactccagcctgggcaacagaaagagactctgtc-tgga------aaaaaaaaaaaagagagagagagagaaggcaaaagttgtttgtccctttaaagactaagcctggaactgacacagtgtctcttcttc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46763480 1320 +  50890351 ATAAAAAGTCttgtagatgaaatcatattatatctgaggtttactctaaaatactccagcagaaaatttaaaatagacttgggggAGGGGACTTACCTGTAGTTATCTGCACATAATCTACATGATTACCTCAAAGCCATCCTTTTGCTGTTGAGAATTctgatttttagctgggcccattgctacccaggtaaaaaagctactttcttcaatgtcacttacagatagatgtagctgtaagtcttcatctaggacaatgatatataagcataaatattgtagacagcttccaaaaggttctttaatgaagtacactttccttccttcacttaactgcctaaaatgcggatgtgatgactgatactctagcatgatcttggaccatgaagatgag-----gttcaagatggtggagggtgagccacaagtaacttaggtccataatgctttttagagtcattgtgccagccctggaccact------agatttattctacataggggagaaatcaattggtattggttttaagtcatcattatttAATTCTCTCTTGGGTACAgattatcaattactgtg-taacaaaccaccctaaaactgagtgacttagggtaacaatc--------tttttttttttttttaatcattcctgatctggtgagatgactgggctcagttgagcggttcttcggctcaacgtgatatcttcctgggcttcagtcatcagtggggctcaactgagctggaatctccaag-------------atggctggctgttgatgctggatgttggttgagagctcaactaggactgttgaatgatgtacctgcacatggcctctccatttgattcagacttcttggagggtagcatctgggtttcaagaggggaagtcacaagagagctttctaaaatagagaaggcggccgggcacagtggctcacgcctgtaatcccaacactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaacatcagcctggccaacatgaggaaacatcatctctactaaaaaaaaaaaaaaaaaaaattagccaggcggaaccctgtctctactaaaattaaaaataaaaattagctgg-------------------------------------------------------gcatgttggtgcacacctgtaatcccagctactcgggaggccgaggcaggagtattgcttaaacctgggagg-cagaggttgcagtgagccgagataacaccatt--------gcactccagcctgggcaacagaaagagactctgtc-tgaa------aaaaaaaaaaaaaaaaaag-gagagagagcaaaagttgtttgtccctttaaagactaagcctggaactgacacagtgtctcttcttc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854  888 - 122678785 I
e calJac3.chr22              45331758  716 +  49145316 I
e papAnu2.chr19              47051879 1727 +  51301725 I

a score=46193.000000
s hg38.chr19_GL949751v2_alt     59605 18 +   1002683 tacagtcttaaggaaagg
s panTro4.chr19              58993382 18 +  63644993 tacagtcttaaggaaagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55869711 18 +  60714840 tacagtctTAAGGCAAGG
i ponAbe2.chr19             C 0 M 200
s nomLeu3.chr10             102629715 18 - 106955855 tacagtcttaaggaaagg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59917871 18 +  64156825 tacagtcttaaggaaagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54937335 18 +  59248254 tacagtcttaaggaaagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47053606 18 +  51301725 TACAGTCTTAAGGAAAgg
i papAnu2.chr19             I 1727 C 0
s chlSab2.chr6               46764800 18 +  50890351 tacagtcttaaggaaagg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I

a score=258494.000000
s hg38.chr19_GL949751v2_alt     59623 135 +   1002683 ccagattcaaggggagggaaaataaactctacctctctatagggacagtgacaaagaattggaggccatctttagtctgtcaTGTGTTATGGTCAATGGAAATAGATATATATATATTtactgagtgcctgagtc
s panTro4.chr19              58993400 135 +  63644993 ccagattcaaggggagggaaaataaactctatctttctatagggacagtgacaaagaattggaggccatctttagtctgtcaTGTGTTATGGTCAATGGAAATAGATATATGTATATTtactgagtgcctgagtc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102629733 135 - 106955855 ccagattcaaggggagggaaaataaactctacctctctatagggacagtgacaaagaattgggggccatctttagtctgtcaTGTGTTATGGTCAATGGAAATAGATATATGTATATTtactgagtgcctgaatc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59917889 135 +  64156825 ccagattcaaggggagggaaaataaactctacctctctatagggacagtgacaaagaattgggggccatctttagtctgccaTGTGTTACGGTCAATGGAAATAGATATATGTATATTtactgagtgcctgagtc
i rheMac3.chr19             C 0 I 283
s macFas5.chr19              54937353 135 +  59248254 ccagattcaaggggagggaaaataaactctacctctctatagggacagtgacaaagaattgggggccatctttagtctgccaTGTGTTACGGTCAATGGAAATAGATATATGTATATTtactgagtgcctgagtc
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47053624 135 +  51301725 ccagattcaaggggagggaaaATAAACTCTACCTCTCTATAGGGACAGTGACAAAGAATTGGGGGCCATCTTTAGTCTGCCATGTGTTACGGTCAATGgaaatagatatatgtatatttactgagtgcctgagTC
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46764818 135 +  50890351 ccagattcaaggggagggaaaataaattatacctctctatagggacagtgacaaagaattgggggccatctttagtctgccaTGTGTTACGGTCAATGGAAATAGATATATATATATTtactgagtgcctgagtc
i chlSab2.chr6              C 0 I 1
e canFam3.chr1               19564854 888 - 122678785 I
e ponAbe2.chr19              55869729 200 +  60714840 M
e calJac3.chr22              45331758 716 +  49145316 I

a score=14659.000000
s hg38.chr19_GL949751v2_alt     59758 23 +   1002683 ccaccgagagattttaattattt
s panTro4.chr19              58993535 23 +  63644993 ccaccgagagattttaattattt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102629868 23 - 106955855 ccacccagagattttcatttttt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54937489 23 +  59248254 acccccagagattttaaattttt
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47053760 20 +  51301725 ACCCCcagagatttaaaatt---
i papAnu2.chr19             I 1 I 1
s chlSab2.chr6               46764954 20 +  50890351 acccccagagattttaaatt---
i chlSab2.chr6              I 1 I 1
e canFam3.chr1               19564854 888 - 122678785 I
e ponAbe2.chr19              55869729 200 +  60714840 M
e calJac3.chr22              45331758 716 +  49145316 I
e rheMac3.chr19              59918024 283 +  64156825 I

a score=4658.000000
s hg38.chr19_GL949751v2_alt     59781 7 +   1002683 ttttatt
s panTro4.chr19              58993558 7 +  63644993 ttttatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55869929 7 +  60714840 ttttatt
i ponAbe2.chr19             M 200 C 0
s nomLeu3.chr10             102629891 7 - 106955855 atttatt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54937512 7 +  59248254 ttttttt
i macFas5.chr19             C 0 I 278
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I
e chlSab2.chr6               46764974 1 +  50890351 I
e papAnu2.chr19              47053780 1 +  51301725 I
e rheMac3.chr19              59918024 283 +  64156825 I

a score=-411.000000
s hg38.chr19_GL949751v2_alt     59788 4 +   1002683 tttg
s panTro4.chr19              58993565 4 +  63644993 tttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55869936 4 +  60714840 tttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102629898 3 - 106955855 tat-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54937797 3 +  59248254 ttt-
i macFas5.chr19             I 278 C 0
s papAnu2.chr19              47053781 3 +  51301725 ttt-
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46764975 3 +  50890351 ttt-
i chlSab2.chr6              I 1 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45331758 716 +  49145316 I
e rheMac3.chr19              59918024 283 +  64156825 I

a score=4745433.000000
s hg38.chr19_GL949751v2_alt     59792 2010 +   1002683 tttttttaagatggaattttgctcttgttgcccaggctgaagtgcaatggcatgatctcagctcactgcaacc-tctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctcggattacaggcaagtgccaccacacccagttaattttgtattttttagtagagatgggatttctccatgttggtcaggctggtcttgaactcttgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccagtcgagattttaatttttataatgggtataggatgaggcctgggtgtctcattctgtgttttaaatgttcctgggaaattctaatgtgcagtcaagtttgagaaccactgGGTTGgaacacataacctccttcccatctcagaccctgaaacatcctgaaaactcctgtatctggagtttttcccccatttttgcttggctaactttgactcttccctcagaaaccagcttcagaatcttttctttagcaaagacttccctgCAAGTTCTTTAACAGCACTTATCTCAGCTGTGACAAAATCATCAATGGTGTAATTGTGTCTTTTTAATGTCTTTTCCCCTATTCTTCATAATCGTCAAAGTAAAGGATAGCTCTTCTCTCAGTCAGAACTATTAATAGATGCTGTAATGGAAATGAAACAAGACTCTCAGACTC-TTGTTAAAGTAAGAAGTCTAGCAGAGTCTCAGGCTTTAA---TTTTTTTTTTCCGATCATAAATGTGGGAGAAAGATCATTTAACCTGCtgctaaggtttgaatatttgttcccttgaaaactcatgttgaaccagcctgggcaacatagggagaccctgtctctacaaataatttaaaaattagccaggtgaggtggcacatgcctgtgatcccagctactcaggaggctgaagtgggaggatcacctgagcccagaaagctgaggatgcagtgaaccgtgattgcaccactgcactccagcctgtgcaacacagtgagaccctgtctcaaaaaataaaTAGGTAAATAAgctgagtgtggtggctcacacctgtaatctcagcactttaggaagccaaggtgggcagatcacatgaggtcaggagtttgagactagctggccaacatgatgaaaccctgtctctactaaaaatacaaaaattacccgggcatggtggcacgtgcctgtaataccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttataatgagctgagatcatgccactgctgtccagcctgggtgacatagcaagacattgtctcaaaaaatacataaataaat---------aataaataaaTaaacttatggtgaaactgaatccctaatgtggccgtattgataggtcgggcatttaagaggtgattgggtcatgaggactcttttctcatgaatgaactaatccattcatggattaatggattagtgagttaatggattaatgggttaccctgggagtgagactggtggctttatcagaagaggaagagagacttaagtagcacgctcagctcttttgccctgtgatgccctgtgccacctcggaaccctccagagagt--------------ccccaacagcaagaaggtcctcaccagatgcagcccctccaccttggactttccaacctccattaactacaggaaataaattccttttctttataagttatctggcttcaagtgttctgttctaagcaacagaatacagactaagacaCAGACACCAATGCATAGCTTCTGATTTAACAGAATTGTTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAATCATAAGATTGTTACCAGGGCAACAAAATATTAAGTAAGACCACCAAATGGCACCAAGGTTTCTCCTTCAAAATAATGATTGCAATACTGGCAATAATTTCTAATGTCTTTGGACTCCTACAAGATTATTTTGTGCAAATTACA
s panTro4.chr19              58993569 2012 +  63644993 tttttttaagatggaattttgctcctgttgcccaggctgaagtgcaatggcatgatctcagctcaccgcaacc-tctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctcggattacaggcaagtgccaccacacccagttaattttgtattttttagtagagataggatttctccatgttggtcaggctggtcttgaactcttgacctcaggtgatctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccagtcgagattttaatttttacaatgggtataggatgaggcctgggtgtctcattctgtgttttaaatgttcctgggaaattctaatgtgcagtcaagtttgagaaccactgGGTTGgaacacataacctccttcccatctcagaccctgaaacatcctgaaaactcctgtatctggagtttttcccccatttttgcttggctaactttgactcttccctcagaaaccagcttcagaatcctttctttagcaaagacttccctgCAAGTTCTTTAACAGCACTTATCTCAGCTGTGACAAAATCATCAATGGTGTAATTGTGTCTTTTTAATGTCTTTTCCCCTATTCTTCATAATAGTCAAAGTAAAGGATAGCTCTTCTCTCAGTCAGAACTATTAATAGATGCTGTAATGGAAATGAAACAAGACTCTCAGACTC-TTGTTAAAGTAAGAAGTCTAGCAGAATCTCAGGCTTTAAATTTTTTTTTTTTCTGATCATAAATGTGGGAGAAAGATCATTTAACCTGCtgctaaggtttgaatatttgttcccttgaaaactcatgttgaaccagcctgggcaacatagggagaccctgtctctacaaataatttaaaaattagccaggtgaggtggcacatgcctgtgatcccagctactcaggaggctgaagtgggaggatcacctgagcccagaaagctgaggatgcagtgaaccgtgattgcaccactgcactccagcctgtgcaacacagtgagaccctgtctcaaaaaataaatagataaataaGCTCAgtgtggtggctcacacctgtaatctcagcactttaggaagccaaggtgggcagatcacatgaggtcaggagtttgagactagctggccaacatgatgaaaccctgtctctactaaaaatacaaaaattacccgggcatggtggcacgtgcctgtaataccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttataatgagctgagatcatgccactgctgtccagcctgggtgacatagcaagacattgtctcaaaaaatacataaataaat---------aataaataaataaacttatggtgaaactgaatccctaatgtggccatatggataggtggggcatttaagaggtgatcgggtcatgaggactcttttctcatgaatgaactaatccattcatggattaatggattagtgagttaatggattaatgggttaccctgggagtgagactggtggctttatcagaagaggaagagagacttaagtagcacgctcagctcttttgccctgtgatgccctgtgccacctcggaaccctccagagagt--------------ccccaacagcaagaaggtcctcaccagatgcagcccctccaccttggactttccaacctcca-taactacaggaaataaattccttttctttataagttatctggtttcaagtgttctgttctaagcaacagaatacagactaagacaCAGACACCAATGCATAGCTTCTGATTTAACAGAATTGTTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAATCATAAGATTGTTACCAGGGCAACAAAATATTAAGTAAGACCACCAAACGGCACCAAGGTTTCTCCTTCAAAATAATGATTGCAATACTGGCAATAATTCCTAACGTCTTCGGACTCCTACAAGATTATTTTGTGCAAATTACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55869940 2013 +  60714840 tttttttaagatggaattttgctcctgttgcccaggctgaagtgcaatggcatgatctcagctcaccgcaacc-tctgcctcccaggttcaagcaattctcctgcctcagcctcccaagtagctcggattataagcatgtgccaccacacccggttaattttgtattttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcttgacctcaggtgatctgcccacattggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccagtcAagattttaatttttataatgggtataggatgaggcctgggtgtctcatcgtgtgttttaaatgttcctgggagattctaaggtgcagtcaactttgagaaccactCGGTTGgaacacacaacctccttcccatctcaggcccggaaacatcctgaaaactcctgtatctggagttgttcccccatttttgcttggctaactttgactcttccctcagaaaccagcttcagaatcctttctttagcaaagacttccctgCAAGTTCTTTAAAAGCACTTATCTCAGCTGTGACAAAATCATCAATGGTGTAATTGTGTCTTTTTAATGTCTTTCCCCCTATTCTTCATAATAGTCAAAGTAAAGGATAGCTCTTCTCTCAGTCAGAACAATTAATAGATGCTGTAATGGAAATGAAACAAGACTCTCAGACTC-TTGTTAAAGTAAGAGGTCTAGCAGAGTCTCAGGCTTTAATTTTTTTTTTTTTCCGATCATAAATGTGGGAGAAAGATCATTTAACCTGCtgctaaggtttgaatatttgttcccttgaaaactcatgttgaaccagcctgggcaacatagggagaccctgtctctacaaa----ttaaaaattagccaggtgaggtggcacacgcctgtgatcccagctactcaggaggctgaagtgggaggatcacctgagcccagaaagctgaggatacagtgaaccgtgattgcaccactgcactccagcctgtgcaacagagtgagaccctgtctcaaaaaataaatagataaaTAagctgagtgtggtggctcacacctgtaatctcagcactttgggaggccaaggtgagcagatcacatgaggtcaggagtttgagactagctggccaacatgatgaaaccccgtctctactaaaaatacaaaaattacctgggcatggtggcatgtgcttgtaataccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttataatgagctgagatcaagccactgctgtccagcctgggtgacatagcaagacATTGTCtaaaaaaataaataaacaaataaataaataaataaataaataaacttatggtgaaattgaatccctaatgtggccgtattgataggtggggcatttaagaggtgattgggtcatgaggactcttttctcatgaatgaactaatccattcatggattaatggattagtgagttaatggattaatgggttaccctgggaatgagactggtggctttatcagaagaggaagaga----caagtagcacgctcagctcctttgctctgtgatgccctgtgccacctcagaaccctccagagagt--------------ccccaacagcaagaaggtcctcaccagatacagcccctccaccttggactttccaacctcca-taactacaggaaataagttccttttctttataagttttctggtttcaactgttctgttctaagcaacagaacacagactaagacaCACACACCAATGCACAGCTTCTGATTTAACAGAATTGTTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAATCATAAGATTGTTACCAGGGAAACAAAATATTAAGTAAGACCACCAAACGGCACCAAGATTTCTCCTTCAAAATAATGATTGCAATACTGGCAATAATTTCTAATGTCTTTGGACTCCTACAAGATTATTTTGTGCAAATTACC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102629901 1988 - 106955855 tgtttttaagatggagttttgctcttgttgcccaggctgaagtgcaatggcatgatcttagctcacggaaaccttccaccttccaggttcaagcgatcctcctgcctcagcctcccgagtagcttggattacaggcatgtgccaccacacccggttaattttgtattttttagtagagatggggtttctccatgttggtcaggcaggtcttgaactcttgacctcaggtgatacgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcccaaccgagattttaatttttataatgggtataggatgaggcctgggtgtctcattctgtgttttaaatgttcctgggatattctcatgtgcagtcaagtttgagaaccactgGGTTGgaacacataacctccttcccatctcaggc----------cctgaaaactcctgtatctggagtttttcccccagttttgcttggctaactttgactcttccatcagaaaccagcttcagaatcctttctttagcaaagacttcgctgCAAGTTCTTTAACAGCACTTATCTCAGCTGTGACAAAATCATCAATGGTGTAATTGTGTCTTTTTAATGTCTTTCCCCC-ATTCTTCATAATAGTCAAAGTAAAGGATAGCTCTTCTCTCAGTCAGAACTATTAATAGATGCTGTAATGGAAATGAAACAAGACTCTCAGACTC-TTGATAAAGTAAGAAGTCTAGCAGAGTCTCAGGCTTTAAA--TTTTTTTTTTCCAATCATAAATGTGGGAGAAAGATAATTTAATCTGCTGCTAAGGTCTG-ATATTTGTTCCCTTGAAAACTCACGTTGAaccagcctgggcaacatagggagaccctgtctctacaaataatttaaaaattagccaggtgaggtggcacatgcctgtgatcccagctactcaggaggctgaagtgggaggatcacctgagcccagaaagctgaggatgcagtgaaccgtgactgcaccactgcactccagcctgtgcaacagagtgagaccctgtctcaaaaaataaatagataaataagctgagtgtggtggctcacacttgtaatctcagcactttgggaggccgaggtggacagatcacatgaggtcaggagtttgagactagctggccaacatgatgaaaccctgtctctactgaaaatacaaaaattacccgggcatggtggcatgtgcctgtaataccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttacagtgagctgagatcatgccactgctgtccagcctgggtgacatagcaagacattgtctcaaaaaatacataaataaat--------------------aaacttatggtgaaattgaatccctaatgtggctgtattgataggtggggcacttaagaggtgaatgtgtcatgaggactcttttattatgaatgaactaatccattcatggattaatggattagtgagttaatggattaatgggttaccctgggagtgagactggtggctttatcagaagaggaagagagaattaagtagcacgctcagctccttttccctgtgatgccctgtgccagctcggaaccctccagagagt--------------ccccaacagcaagaagttcctcaccagatgcagtccctccaccatggactttccaacctcca-taactacaggaaataaattccttttctttataagttttctggtttcaagtgttctgttctaagcaacagaatacagactaagacaCACACACCAATGCACAGCTTCTGATTTAACAGAATTGTTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAATCATAAGATTGTTACCAGGGCAACAAAATATTAAGTAAGATCACCAAACGGCACCAAGGTTTCTCCTTCAAAATAACGATTGCAATACTGGCAATAATTTCTAATGTCTTTGGACTCCTACAAGATTATTTTGTGCAAATTACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59918307 2001 +  64156825 ttttttttagatggagttttgctcttgttgcccaggctggagtgcaatggcataatctcggctcaccacaaca-tccacctcccaggttcaagcgattttcctgcctcagcctcccgagtagctgggattacaggcgtgcgccaccgcgcccggctaatgttgtattttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatccgcctgtgttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccagcT--gattttaatttttataatgggtacaggatgaggcctaggtgtctcattctgtgttttaaatgttcctgggagattctcatgtgccgtcaaatttgagaaccactCGGTTGgaacacataacctccttcccatctcagtccctgaaacaa--tgctatttcctgtatctggagtttttcccccatttttgcttggctaacttggactcttccctcagaaaccagcttcagaatcctttctttagcaaagacttccctgCATGTTCTTTAACAGCACTTATCTCAGCTACAACAAAATCATCAGTTGTGTAATTGTGTCTTTTTAACGTCTTTTCCCCCTTTCTTCATAATAGTCAAAGTGAAGGATGGCTCTTATCTCAGTCAGAACTATTAATAGATATTGTAATGGAAATGAAACAAGACCTTCAGACTC-TTCTTAAAGTAAGAAGTCTAGCAGAGTCTCGGGCTTTAAATTTTTTTTTTTTCCGATCATAAATGTGGGATAAAGATAATTTAAACTGCtgctaaggtttgaatatttgttcccttgaaaactcatgttgaaccagcctgggcaacatcaggaga-cctgtctctataaataatttaaaaattagccaggtgaggtggcacatgcctgtgatctcagctactcaggaggctgaagtgggaggatcacctgagcccagaaagctgacaatgcagtgagccgtgactgcaccactgaactccagcctgtgcaacagagtgagaccctgtctcaaaatataaatagataaataagctgagtgcggtggctcacacctgtaatctcagcactttgggaggccaaggtgggcagatcacatgaggtcaggagtttgagaccaaccggccaacatgatggaaccccgtctctactaaaaatacaaaaattacccgggcatggtggcacgtgcctgtaatacgaactacgcaggaggctgaggcaggaaaatcacttgaacctgggaggtggaggttacagtgagctgagatcatgccactgctctccagcctgggtgacatagcaagacgttgtctcaaaaaatacataaataaa----------------------aacttatggtgaaattgaatccccaatgtggcagtattgagaggtggggactttaagaggtgattgggtcatgaggactcttttctcatgaatgaactaatccattcatggattaatggattagtgagttaatggattcatgggttaccctgggagtgagactggtggctttatcagaagaggaagagagacttgagtagcacgctcagctcctttgccctgtgatgccttgtgccacctcaggaccctccagagagtcccgagtcttcttgccccaacagcaagaaggccctcaccagatgcagcccctccaccttggacttcccaacctcca-caactacaggaaataaattccttttctttacaa-------cgtttcaagtattctgttctaagcaacggaatacggactaagacaCACACACCAATGCACAGCTTCTCATTTAACAGAATCGGTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAGTCATAAGATTGTTACTAGGGCAACAAAATATTAAGTAAGACCACCAAATGGCACCAAGGTTTCTCCTTCATAATAATGATTGCAATACTGGCAATAATTTCTAATGTCTTCGGACTCCTACAAGGTTATTTTGTGCAAATTACA
i rheMac3.chr19             I 283 C 0
s macFas5.chr19              54937800 2001 +  59248254 ttttttttagatggagttttgctcttgttgcccaggctggagtgcaatggcataatctcggctcaccacaaca-tccacctcccaggttcaagcgattttcctgcctcagcctcccgagtagctgggattacaggcgtgcgccaccgcgcccggctaatgttgtattttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatccgcctgtgttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccagct--gattttaatttttataatgggtacaggatgaggcctaggtgtctcattctgtgttttaaatgttcctgggagattctcatgtgccgtcaaatttgagaaccactCGGTTGgaacacataacctccttcccatctcagtccctgaaacaa--tgctatttcctgtatctggagtttttcccccatttttgcttggctaacttggactcttccctcagaaaccagcttcagaatcctttctttagcaaagacttccctgCATGTTCTTTAACAGCACTTATCTCAGCTACAACAAAATCATCAGTTGTGTAATTGTGTCTTTTTAACGTCTTTTCCCCCTTTCTTCATAATAGTCAAAGTGAAGGATGGCTCTTATCTCAGTCAGAACTATTAATAGATATTGTAATGGAAATGAAACAAGACCTTCAGACTC-TTCTTAAAGTAAGAAGTCTAGCAGAGTCTCGGGCTTTAAATTTTTTTTTTTTCCGATCATAAATGTGGGATAAAGATAATTTAACCTGCtgctaaggtttgaatatttgttcccttgaaaactcatgttgaaccagcctgggcaacatcaggaga-cctgtctctataaataatttaaaaattagccaggtgaggtggcacatgcctgtgatcccagctactcaggaggctgaagtgggaggatcacctgagcccagaaagctgacaatgcagtgagccgtgactgcaccactgaactccagcctgtgcaacagagtgagaccctgtctcaaaaaataaatagataaataagctgagtgcggtggctcacacctgtaatctcagcactttgggaggccaaggtgggcagatcacatgaggtcaggagtttgagaccaaccggccaacatgatggaaccccgtctctactaaaaatacaaaaattacccgggcatggtggcacgtgcctgtaatacgaactactcaggaggctgaggcaggaaaatcagttgaacctgggaggtggaggttacagtgagctgagatcatgccactgctctccagcctgggtgacatagcaagacgttgtctcaaaaaatacataaataaa----------------------aacttatggtgaaattgaatccccaatgtggcagtattgagaggtggggactttaagaggtgattgggtcatgaggactcttttctcatgaatgaactaatccattcatggattaatggattagtgagttaatggattcatgggttaccctgggagtgagactggtggctttatcagaagaggaagagagacttgagtagcacgctcagctcctttgccctgtgatgccttgtgccacctcaggaccctccagagagtcccgagtcttcttgccccaacagcaagaaggccctcgccagatgcagcccctccaccttggacttcccaacctcca-caactacaggaaataaattccttttctttacaa-------cgtttcaagtattctgttctaagcaacggaatacggactaagacaCACACACCAATGCACAGCTTCTCATTTAACAGAATCGGTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAGTCATAAGATTGTTACTAGGGCAACAAAATATTAAGTAAGACCACCAAATGGCACCAAGGTTTCTCCTTCATAATAATGATTGCAATACTGGCAATAATTTCTAATGTCTTCGGACTCCTACAAGGTTATTTTGTGCAAATTACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47053784 2002 +  51301725 ttttttttagatggagttttgctcttgttgcccaggttggagtgcaatggcataatctcagctcaccacaaca-tccacctcccaggctcaagcgattttcctgcctcagcctcccgagtagctgggattacaggcgtgcgccaccgcacccagctaatgttgtattttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatccgcctgtgttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccggct--gattttaatttttataatgggTACAGGATGAGGCCTAGGTGTCTCATTCTGTGTTTTAAATGTTCCTGGGAGATTCTTATGTGCCgtcaaatttgagaaccactcgGTTGGAACACATAACCTCCTTCCCATCTCAGGCCCTGAAACAA--TGCTATTTCCTGTATCTGGagtttttcccccatttttgCTTGGCTAACTTGGACTCTTCCCTCAGAAACCAGCTTCAGAATCCTTTCTTTAGCAAAGACTTCCCTGCATGTTCTTTAAGAGCACTTATCTCAGCTACAACAAAATCATCAGTTGTGTAATTGTGTCTTTTTAACgtcttttccccctttcttcaTAATAGTCAAAGTAAAGGATGGCTCTTATCTCAGTCAGAACTATTAATAGATATTGTAATGGAAATGAAACAAGACCTTCAGACTCATTCTTAAAGTAAGAAGTCTAGCAGAGTCTTgggctttaaa--ttttttttttccgatCATAAATGTGGGATAAAGATAATTTAACCTGCTGCTAAGGTTTAAATATTTGTTCCCTTGAAAACTCATgttgaaccagcctgggcaacatcaggaga-cctgtctctacaaataatttaaaaattagccaggtgaggtggcacatgcctgtgatcccagctactcaggaggctgaagtgggaggatcacctgagcccagaaagcTGAcgatgcagtgagccgtgactgcaccactgaactccagcctgtgcaacacagtgagaccctgtctcaaaaaataaatagataaataagctgagtgcggtggctcacacctgtaatctcagcactttgggaggccaaggtgggcagatcacatgaggtcaggagtttgagaccaaccggccaacatgatggaaccccatctctactaaaactacaaaaattacctgggcatggtggcacgtgcctgtaatacgaactactcaggaggctgaggcaggaaaatcacttgaacctgggaggtggaggttacagtgagctgagatcatgccactgctctccagcctgggtgacatagcaagacgttgtctcaaaaaatacataaataaat--------------------gaacttaTGGTGAAATtgaatccccaatgtggcagtattgagaggtggggactttaagaggtgattgggtcatgaggacTCTTTTCTCATGAATGaactaatccattcatggattaatggattagtgagttaatggattaatgggttaccCTGGGAGTGAGACTGGTGGCTTtatcagaagaggaagagagacttgAGTAGCACGCTCAGCTCCTTTGCCCTGTGATGCCCTGTGCCACCTCGGGACCCTCCAGAGAGTCCCGAGTCTTCTTGCCCcaacagcaagaaggccctcaccagatgcagcccctccagcttggacttcccaacctcca-caACTAcaggaaataaattccttttctttacaa-------CGTTTCAAGTATTCTGTTCTAAGCAACGGAATACGGACTAAGACACACACACCAATGCACAGCTTCTCATTTAACAGAATCGGTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAGTCATAAGATTGTTACTAGGGCAACAAAATATTAAGTAAGACCACCAAATGGCACCAAGGTTTCTCCTTCATAATAATGATTGCAATACTGGCAATAATTTCTAATGTCTTCGGACTCCTACAAGGTTATTTTGTGCAAATTACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46764978 1993 +  50890351 -tttttttagatagagttttgctcttattgcccaggctggagtgcaatggcataatctcggctcaccacaaca-tccgcctcccaggctcaagcgattttcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccgcacctggctaatgttgtattttttagtagagatagggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatccgcctgtgttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcctggct--gattttaatttttataatgggtataggatgaggcctaggtgtctcattctgtgttttaaatgttcctgggagattctcacgtgctgtcaaatttgagaaccactCGGTTGgaacacataacctccttcccatctcaggccctgaaacaa--tgctatttcctgtatctggagtttttcccccatttttgcttggcaaacttggactcttccctcagaaaccagcttcagaatcctttctttagcaaagacttccctgCATGTTCTTTAACAGCACTTGTCTCAGCTACAACAAAATCATCAGTTGTGTAATTGTGTCTTTTTAACGTCTTTTCCCCCTTTCTTCATAATAGTCAAAGTGAAGAATGGCTCTT-----AGTCAGAACTATTAATAGATATTGTAATGGAAATGAAACAAGACCTTCAGACTC-TTCTTAAAGTAAGAAGTCTAGCAGAGTCTCGGGCTTTAAA--TTTTTTTTTCCCGATCATAAATGTGGGATAAAGATAATTTAACCTGCtgctaaggtttgaatatttgttcccttgaaaactcatgttgaaccagcctgggcaacatcaggaga-cctgtctctacaaataatttaaaaattagccaggtgaggtggcacatgcctgtgatcccagctacttaggaggctgaagtgggaggatcacctgaacccagaaagctgacgatgcagtgagccgtgactgcaccactgaactccagcctgtgcaacagagtgagaccctgtctcaaaaaataaaTAGATACATAAgctgagtgcggtggctcacgcctgtgatctcagcactttgggaggccaaggtgggcagatcacatgaggtcaggagtttgagaccaactggccaacatgatggaaccccgtctctactaaaaatacaaaaattacccgggcatggtggcacgtgcctgtaatacgaactactcaggaggctgaggcaggaaaatcacttgaacctgggaggtggaggttacagtgagctgagatcatgccactgctctccagcctggctgacatagcaagatgttgtctcaaaaaatacataaataaaT--------------------Gaacttacggtgaaattgaatccccaatgtggcagtattgagaggtggggactttaagaggtgattgggtcatgaggactcttttctcatgaatgaactaatccattcatggattaatggattagtgagttaatggattaatgggttaccctgggagtgagactggtggctttatcagaagaggaagagagacttgagtagcacgctcagctcctttgccctgtgatgccctgtgccacctcgggaccctcc--agagtcccgagtcttcttgccccaacagcaagaaggccctcaccagatgcagcccctccaccttggacttcccaacctcca-caactacaggaaataaattccttttctttacaa-------cgtttcaagtattctgttctaagcaacggaatacggactaagacGCACACACCAATGCACAGCTTCTCATTTAACAGAATCGGTTTTACAAGCATTTATTCTGCTTGGAAATTCAGATGTCAGTCATAAGATTGTTACTAGGGCAACAAAATATTAAGTAAGACCACCAAATGGCACCAAGGTTTGTCCTTCATAATAATGATTGCAATACTGGCAATAATTTCTAATGTCTTCGGACTCCTACAAGGTTATTTTGTGCAAATTACA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854  888 - 122678785 I
e calJac3.chr22              45331758  716 +  49145316 I

a score=426404.000000
s hg38.chr19_GL949751v2_alt     61802 162 +   1002683 CTTCAAAGCACAGATTTATGGAACCACAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTCCATACTACATAAGACTATAAAACACATTTAGAGCCTTTTTAATATTCTCAGTTTATTAACTTATCAATCCACATTCCATTTTTT----TGTTTGTTT------
s panTro4.chr19              58995581 156 +  63644993 CTTCAAAGCACAGATTTATGGAACCACAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTTCATACTACGCAAGACTATAAAACGCATTTAGAGCCTTTTTAATATTCTCAGTTTATTAACTTATCAATCCACATTCCGGTTTTT----------TTT------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55871953 159 +  60714840 CTTCAAAGGACAGATTTATGGAACCAGAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTCCATACTACACAAGACTATAAAACACATTTAGAGCCTTTTTAATATTCTCAGTTTATTACCTTATCAATCCACATTCTGTTTTTT-----GTt--ttt------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102631889 164 - 106955855 CTTCAAAGGACAGATTTATGGAACCAGAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTCCATACTACACAAGACTATAAAACACATTTAGAGCCTTTTTAATATTCTCAGTTTATTACCTTATCCATCCACATTttgttgttgttgttgtt--gtt------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59920308 150 +  64156825 CTTCAAAGGACAGATTTATGCAACCAGAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTCCATACTACACAAGACTATAAAACAGATTTAGAGCCTTTTGAATATTCTCAGTTTGTTACCTTATCAAACCACAttctg----------------ttt------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54939801 150 +  59248254 CTTCAAAGGACAGATTTATGCAACCAGAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTCCATACTACACAAGACTATAAAACAGATTTAGAGCCTTTTGAATATTCTCAGTTTGTTACCTTATCAAACCACAttctg----------------ttt------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47055786 150 +  51301725 CTTCAAAGGACAGATTTATGCAACCAGAGAATGGAACACtggctgctgtaataaatatcCATAGATCTCCATACTACACAAGACTATAAAACAGATTTAGAGCCTTTTGAATATTCTCAGTTTATTACCTTATCAAACcacattctg----------------ttt------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46766971 150 +  50890351 CTGCAAAGGACAGACTTATGCAACCAGAGAATGGAACACTGGCTGCTGTAATAAATATCCATAGATCTCCATACTACACAAGACTATAAAACAGATTTGGAGCCTTTTGAATATTCTCAGTTTATTGCCTTATCAAACCACAttctg----------------ttt------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45332474 161 +  49145316 ccCCAAAGGACAGATTTATGGAACCAGAGAATGGAACGCTGGTCGCTGTAATAAATATCCATAGATCTCCATACTACAGAAGA-TATAAAACACATTTAGAGTCTTTTGAATATTCTCAGTTTATGACCTTATCAAACCACAttctgtttttg----------tttttgttt
i calJac3.chr22             I 716 I 245
e canFam3.chr1               19564854 888 - 122678785 I

a score=328804.000000
s hg38.chr19_GL949751v2_alt     61964 159 +   1002683 GttttgttttgtttttttactttaagttctagggtacatgtgcataatgtacaggtttgatacatgtgccatgttggtttgctccacccatcaagttatcatttacattaggtatttctcctaatgctatccctcccccagccccccaccccacTCTG-t
s panTro4.chr19              58995737 159 +  63644993 GttttgttttgtttttttactttaagttctagggtacatgtgcacaatgtacagatttgatacatgtgccatgttggtttgctccacccatcaagttatcatttacattaggtatttctcctaatgctatccctcccccagccccccaccccacTCTG-t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872112 155 +  60714840 gt----ttttttttttttactttaagttctagggtacatgtgcacaatgtgcaggtttgatacatgtgccatgttggtttgctgcacccatcaacttatcatttacattaggtatttctcctaatgctatccctcccccagccccccacccATCTCtg-t
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102632053 156 - 106955855 gttttgttt--tttttttactttaagttccagggtacatgtgcacaatgtgcaggtttgatacatgtgccatgttggtttgctgcacccatcaacttatcatttacattaggtatttctcctaatgctgtccct-ccccagccccccacccccctctg-t
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59920458 148 +  64156825 gt---------ttgttttactttaagttctagtgtacatgtgtacaacgtgcaggtttgatatatgtgccatgctggtttgctgcatccatcaacttatcatttacattaggta-ttctcctaatgctatcccttccccagccccccgccccCCACTG--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54939951 149 +  59248254 gt---------ttgttttactttaagttctagtgtacatgtgtacaacgtgcaggtttgatatatgtgccatgctggtttgctgcatccatcaacttatcatttacattaggtatttctcctaatgctatcccttccccagccccccgccccCCACtg--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47055936 149 +  51301725 gt---------ttgttttactttaagttctagtgtacatgtgtacaacgtgcaggtttgatatatgtgccatgctggtttgctgcatccatcaacttatcatttacattaggtatttctcctaatgctatccctcccccagccccccgccccccactg--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46767121 150 +  50890351 gt---------ttgttttactttaagttctagtgtacatgtgtacaacgtgcaggtttgatatatgtgccatgctggtttgctacatccatcaacttatcatttacattagttatttctcctaatgctatccctcccccagccccccgccccCCACtgt-
i chlSab2.chr6              C 0 I 52
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=9314.000000
s hg38.chr19_GL949751v2_alt     62123 34 +   1002683 tttt------------------tttttttttgttt---------ttttttttttaagacag
s panTro4.chr19              58995896 24 +  63644993 tttt----------------------------tgt---------ttttttttttaagacag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872267 52 +  60714840 tttttgtttgtttgtttgtttgtttgttgttgttc---------ttttgtttttaagacag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102632209 26 - 106955855 tttt------------------tt--------ttt---------ttttttttttAAGACAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59920606 32 +  64156825 ------------------TGTGTGTGTGTGTGTGt---------ttttttttttaagac--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54940100 31 +  59248254 ------------------tgtgtgtgtgtgtgtg----------ttttttttttaagac--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47056085 41 +  51301725 ------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttaagac--
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I
e chlSab2.chr6               46767271 52 +  50890351 I

a score=15777.000000
s hg38.chr19_GL949751v2_alt     62157 7 +   1002683 ggtctca
s panTro4.chr19              58995920 7 +  63644993 ggtctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872319 7 +  60714840 ggtctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102632235 7 - 106955855 GGTCTTA
i nomLeu3.chr10             C 0 I 340
s rheMac3.chr19              59920638 7 +  64156825 gatctca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54940131 7 +  59248254 gatctca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47056126 7 +  51301725 gatctca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46767323 7 +  50890351 gatctca
i chlSab2.chr6              I 52 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=58123.000000
s hg38.chr19_GL949751v2_alt     62164 32 +   1002683 ctgtgtcacccaggttggagtgcagtggtgtg
s panTro4.chr19              58995927 32 +  63644993 ctgtgtcacccaggttggagtgcagtggtttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872326 32 +  60714840 ctgtgtcacccaggctggagtgcagtggtgtg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59920645 32 +  64156825 ctctgtcacccaggctggagtgcagtggtgtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54940138 32 +  59248254 ctctgtcacccaggctggagtgcagtggtgtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47056133 30 +  51301725 --ctgtcacccaggctggagtgcagtggtgtg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46767330 32 +  50890351 ctctgtcacccaggctggagtgcagtggtgtg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I
e nomLeu3.chr10             102632242 340 - 106955855 I

a score=1340866.000000
s hg38.chr19_GL949751v2_alt     62196 589 +   1002683 atctcgactcactgcaacctctgcctctcgggttcaagtgattctcttgccccagc-cctcccaagtacaaggaattacagggttgtgccaccacgccgggctaatttttgtacttttagtagagacagtgttttgccatgttggccagggctggtctcgaacttctgggcccaagtgatccgcctgcctcgacctcccaaagttctgggattacaggtgtgaaccaccatgcctcgccTAAACTACATTCTTGAATTAGTTTTATGGCACAGAATAtctttttctcctctctcaatgccctctctctctctagctccctctcctcCCCTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTCTTAAACTTCTTTTGATCAATTATAAAGAA------------ttttt--ttttttagat-ggagtctcactctgtcacccaggatggagtgcaatggcacaatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgggactacaggcatgtgccactacgcccggctac-----------ttttttttttttttgtatttttagtagagacggggtt
s panTro4.chr19              58995959 600 +  63644993 atctcgactcactgcaacctctgcctctcgggttcaagtgattctcttgccccagc-cctcccaagtaccaggaattacagggttgtgccaccacgcctggctaatttttgtacttttagtagagacagtgttttgccatgttggccagggctggtctcgaacttctgggcccaagtgatccgcctgcctcgacctcccaaagttctgggattacaggtgtgaaccaccatgccTCACCTAAACTACATTCTTGAATTAGTTTTATGGCACAGAATATCTTTTTCTCCTCTCTCAATGCCCTCTCTCTCTCTAGCTCCCTCTCCTCCCCTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTCTTAAACTTCTTTTGATCAATTATAAAGAA------------ttttt--ttttttagat-ggagtctcactctgtcacccaggatggagtgcaatggcacaatctcagctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgggactacaagcatgtgccactacgcccggctactttttttttttttttttttttttttgtatttttagtagagacggggtt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872358 594 +  60714840 atctccactctctgcaacctctgcctcttgggttcaagtgattctcctgccccagc-ccccccacgtacgtggaattacagggttgtgccaccacgcctggctaatttttgtacttttagtagagacagcatttcgccatgttgggca-ggctggtctcgaacttctgggcccaagtgatccacctgcctcgacctccgaaagttctgggattataggtgtgaaccaccatgcctcgccTAAACTACATTCTTGAATTAGTTTTATGGCACAGAATATCTTTTTCTCC-CTCTCAATCCCCTCTCTCTCTCTAGCTCCCTTTCCTCCCCTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTATAAAACTTCTTTTGATTAATTATAAAGAA-----------tttttt--ttttttagat-ggagtcttgctctgtcgcccaggatggagtgcaatggcacaatctcagctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggagtgtgccaccacgcccggctaa-----ttttttttttttttttttttgtatttttagtagagatggggtt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102632582 592 - 106955855 atcttgactctctgcaacctctgcctcttgggttcaagtgattctcctgccccagctccccccaagtacctggaattagagggttgtgcaaccatgcctggctgatttttgtacttttagtagagacagcgttttgccatgttggcca-ggctggtctcgcacttctgggcccaagtgatcccaaacaatcgacctcccaaagttctgggattacaggtgtgaaccaccatgccttgccTAAACTACATTCTTGAATTAGTTTTATGGCACAGAATATCTTTTTCTCCTCTCTCAATCCCCTCTCTCTCCCTAGCTCCCCTTCCTCCCCTACAGCTGCAAAGAAGAAATCTTCTTAATCCATTTCTAAAACTTCTTTTGATTAATTATAAAGAA-----------tttttg--ttttttagat-ggagtcttgctctgtcgcccaggatggagtgcaatggcacaatctcagctcacctcaacctccgcctcctgggttcaagtggttttcccacctcagcctccccagtagctgggactacaggtgcgtgccactacgctcgactac---------ttttttttttttttttgtatttttagtagagacggggtt
i nomLeu3.chr10             I 340 C 0
s rheMac3.chr19              59920677 597 +  64156825 atctcaactcactgcaacctctgtctcctgggttcaagtgattctcctgccccagc-cccctcaagtacctgaaattacagggttgtgccaccatgcctggttaatttttgtatttttagtagagacaacatttcaccatgttggcca-ggctggtcgcaaacttctgagatcaagtgatccacactcctcagcctcccaaatttctgggattacaggtgtgaaccaccatgcctggccTAAACTACATTCTTGAATTAGTTTTACGGCATGGAATATCTTTTTCTCCTCTCTCAATCCTCTCTCTCTCTCTAGCGCCCTTTCTTCCCTTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTCTTAAACTTCTTTTGATTAATTATAAAGAA------ttttttttttt--ttttttagataagagtctccctctgtcacccaggctggagtgcaacggcagaatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacagatgtgtgccactacacctggcttt---------ttttgtttgtttctttgtattttcagtagcgatggggtt
i rheMac3.chr19             C 0 I 2
s macFas5.chr19              54940170 602 +  59248254 atctcaactcactgcaacctctgtctcctgggttcaagtgattctcctgccccagc-cccctcaagtacctgaaattacagggttgtgccaccatgcctggttaatttttgtatttttagtagagacaacatttcaccatgttggcca-ggctggtcgcaaacttctgagctcaagtgatccacccacctcagcctcccaaaattctgggattacaggtgtgaaccaccatgcctggccTAAACTACATTCTTGAATTAGTTTTACGGCATGGAATAtctttttctcctctctcaatcctctctctctctctagctccctttcctcCCCTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTCTTAAACTTCTTTTGATTAATTATAAAGAAttttttttttttttttt--ttttttagat-ggagtctccctctgtcacccaggctggagtgcaacggcaaaatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacagatgtgtgccactacacctggcttt---------ttttgtttgtttctttgtattttcagtagcaatggggtt
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47056163 604 +  51301725 atctcaactcactgcaacctctgcctcctgggttcaagtgattctcctgccccagc-cccctcaagtacctggaattacagggttgtgccaccatgcctggttaatttttgtatttttagtagagacaacatttcaccatgttggcca-ggctggtcgcaaacttctgagctcaagtgatccgcccacctcagcctcccaaaattctgggattacaggtgtgaaccaccatgccgggcctaaACTACATTCTTGAATTAGTTTtatggcatggaatatctttttctcctctctcaatcctctctctctctctagctcccTTTCCTCCCCTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTCTTAAACTTCTTTTGATtaattataaagaattttttttttttttttttattttttagat-agagtctccctctgtcacccaggctggagggcaacggcaaaatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacagatgtgtgccactacccctggcttt---------ttttgtttgtttctttgtattttcagtagcgatggggtt
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               46767362 593 +  50890351 atctcgactcactgcaacctctgcctcctgggttcaagtgattctcctgccccagc-cccctcaagtacctggaattacggggttgtgccaccatgcctggttaatttttgtatttttagtagagacaacatttcaccatgttggcca-ggctggtcgcaaacttctgagctcaagtgatccgcccacctcagcctcccaaaattctgggattacaggtgtgaaccaccatgcctggcTTAAACTACATTCTTGAATTAGTTTTACGGCACGGAATAtctttttctcctctctcaatcctctgtctctctctagctccctttcctcCCCTACAGCTGCAAAGAAGAGATCTTCTTAATCCATTTCTTAAACTTCTTTTGATTAATTATAAAGAA---------tttttttt--ttttttagat-ggagtctccctctgtcacccaggctggagtgcaacggcaaaatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacagatgtgtgccactacccctggcttt---------ttttgtttgtttctttgtattttcagtagcgatggggtt
i chlSab2.chr6              C 0 I 2
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=88561.000000
s hg38.chr19_GL949751v2_alt     62785 47 +   1002683 tcaccatgttagccaggatggtctcgatctcctgacctcatgatccg
s panTro4.chr19              58996559 47 +  63644993 tcaccatgttagccaggatggtctcgatctcctgacctcatgatccg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872952 47 +  60714840 tcaccatgttagccaggatggtctcgatctcctgacttcgtgatccg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633174 47 - 106955855 tcaccatgttagccaggatggtctcgatctcctgaccttgtgatccg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59921276 47 +  64156825 tcaccatgttagccaggatggtcttgatctcctgacctcatgatctg
i rheMac3.chr19             I 2 C 0
s macFas5.chr19              54940774 47 +  59248254 tcaccatgttagccaggatggtcttgatctcctgacctcatgatctg
i macFas5.chr19             I 2 C 0
s papAnu2.chr19              47056769 47 +  51301725 tcaccatgttagccaggatggtcttgatctcctgacctcatgatctg
i papAnu2.chr19             I 2 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I
e chlSab2.chr6               46767955  2 +  50890351 I

a score=21831.000000
s hg38.chr19_GL949751v2_alt     62832 39 +   1002683 cccacctcagccttccaaagtgctgggactacaggcgtg
s panTro4.chr19              58996606 39 +  63644993 cccacctcagccttccaaagtgctgggactacaggcgtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55872999 39 +  60714840 cccacctcagcctcccaaagtgctgggattacaggcgtg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633221 39 - 106955855 cccacctcagccttccaaagtgctgggactacaggcgtg
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I
e chlSab2.chr6               46767955  2 +  50890351 I
e papAnu2.chr19              47056816  0 +  51301725 C
e macFas5.chr19              54940821  0 +  59248254 C
e rheMac3.chr19              59921323  0 +  64156825 C

a score=10660.000000
s hg38.chr19_GL949751v2_alt     62871 60 +   1002683 tgccactacacccggcTACTTTTGTGTGTGTGTGTGtgtgtgtttagtagagacggagtt
s panTro4.chr19              58996645 59 +  63644993 tgccactacacccggcTAC-TTTGTGTGTGTGTGTGtgtgtttttagtagagacggagtt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102633260 57 - 106955855 tgccactacgccgggcTACCTTT---TTTTTttttttgtatttttagtagagacggggtt
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e ponAbe2.chr19              55873038  0 +  60714840 C
e calJac3.chr22              45332635 245 +  49145316 I
e chlSab2.chr6               46767955  2 +  50890351 I
e papAnu2.chr19              47056816  0 +  51301725 C
e macFas5.chr19              54940821  0 +  59248254 C
e rheMac3.chr19              59921323  0 +  64156825 C

a score=22801.000000
s hg38.chr19_GL949751v2_alt     62931 47 +   1002683 tcaccatgttagccaagatggtctcgatctccggaccttgtgatcca
s panTro4.chr19              58996704 47 +  63644993 tcaccgtgttagccaagatggtctcgatctcctgacctcatgatccg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102633317 47 - 106955855 tcaccatgttagccaaggtggtctcgatctcctgacctcgtgatccg
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               46767957 47 +  50890351 tcaccatgttagccagaatggtcttgatctcctgacctcatgatctg
i chlSab2.chr6              I 2 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e ponAbe2.chr19              55873038  0 +  60714840 C
e calJac3.chr22              45332635 245 +  49145316 I
e papAnu2.chr19              47056816  0 +  51301725 C
e macFas5.chr19              54940821  0 +  59248254 C
e rheMac3.chr19              59921323  0 +  64156825 C

a score=69566.000000
s hg38.chr19_GL949751v2_alt     62978 39 +   1002683 cccgcctcagcctcccaaagtgctgggattacaggtgta
s panTro4.chr19              58996751 39 +  63644993 cccacctcagcctcccaaagtgccgggattacaggtgta
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102633364 39 - 106955855 cccgcctcagcctcccaaagtgatgggattacaggcgtg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59921323 39 +  64156825 cctgcctcagcctcccaaagtgctggtattacaggcgtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54940821 39 +  59248254 cctgcctcagcctcccaaagtgctggtattacaggcgtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47056816 39 +  51301725 cctgcctcagcctcccaaagtgctggtattacaggcgtg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46768004 39 +  50890351 cctgcctcagcctcccaaagtgctggtattacaggcgtg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e ponAbe2.chr19              55873038  0 +  60714840 C
e calJac3.chr22              45332635 245 +  49145316 I

a score=776036.000000
s hg38.chr19_GL949751v2_alt     63017 321 +   1002683 agccactgtgcccggccAATTATAAATATTTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGGCCTATAAAGTTCAATTTTACTGGTAGAAAGCAAGAAATGGATGAATAGGATGTTCGCTGACAACCATGCAATtgaaacctcctttgcaaaaattacgagagtgagcaaacgatggcagtgaaggagatcggatctggccagcccctaccttgcctttggccctcaaactgcttgtagttattcctgggtttaggctaatctgacttgtctctttgggagaca-tttattttattttct
s panTro4.chr19              58996790 321 +  63644993 agccactgtgcccggccAATTATAAATAATTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGGCCTATAAGGTTCAATTTTACTGGCAGAAAGCAAGAAATGGATGAATAGGATGTTTGCTGACAACCATGCCATtgaaacctcctttgcaaaaattacgagagtgagcaaacgatggcagcaaaggagatcggatctggccagcccctaccttgcctttggccctcaaactgcctgtagttattcctgggtttaggctaatctgacttgtctctttgggagaca-tttattttattttct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55873038 321 +  60714840 agacactgtgcccggccAATTATAAATAATTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGGCCTATAAAGTTCAATTTTACCGGTAGAAAGCAAGAAATGGATGAATAGGATGTTCTCTGACAACCATGCAATtgaaacctcctttgcaaaaattacgagagtgagcaaacaatggcagtgaaggagatcggatctggccagcccctaccttgcctttggccctcaaacttcctgtagttattcctgggtttaggctaatttgacttgtctctttgggagaca-tttgttttattttct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633403 319 - 106955855 agccactgcgcccggccAATTATAAATAATTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAACAGGCCTATAAAGTTCAATTTTACTGGTAGAAAGCAAGAAATAGATGAATAGGATGTTCGCTGACAACCATACAATtgaaacctcctttgcaaaaattac--gagtgagcaaacaatggccgtgaaggagattggatctggccagcccctacgttgcctttggccctcaaagtgcctgtggttattcctgggtttaggctaatctgagttgtctctttgggagaca-tttattttattttct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59921362 322 +  64156825 agccactgcacctggccAATTATAAATAATTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGGCCTATAAAGTTCAATTTTACTGGTAGAAAGCAAGAAATGGATGAATAGGATGTTAGCTGACAACCATGCAATtgaaacctcctttgcaaaaactatgagagtgagaaaacaatggcagtgaaggagatcggatctggccagcccctaccttgcctttgaccctcaagctgcctgtagttattcctgggtttaggctaatctgacttGTCTCTTTGGGAGAtattttattttattttat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54940860 322 +  59248254 agccaccgcacctggccAATTATAAATAATTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGGCCTATAAAGTTCAATTTTACTGGTAGAAAGCAAGAAATGGATGAATAGGATGTTAGCTGACAACCATGCAATtgaaacctcctttgcaaaaactatgagagtgagaaaacaatggcagtgaaggagatcggatctggccagcccctaccttgcctttgaccctcaagctgcctgtagttattcctgggtttaggctaatctgacttgtctctttgggagatattttattttattttat
i macFas5.chr19             C 0 I 130
s papAnu2.chr19              47056855 322 +  51301725 agccaccgcacctggctaattataaataatttttaaggctaAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGGCctataaaattcaattttactGGTAGAAAGCAAGAAATGGACGAATAGGATGTTAGCTGACAACCATGCAATTGCAACCTCCTTTGCAAAAACTATGAGAGTAAGAAAACAATGGCAGTGAAGGAGATCGGATCTGGCCAGCCCCTACCTTGCCTTTGACCCTCAAGCTGCCTGTAGTTATTCCTGGGTTTAGGCTAATCTGACTTGTCTCTTtgggagatattttattttattttat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46768043 322 +  50890351 agccaccgcacctggccAATTATAAATAATTTTTAAGGCTAAACTCTGGAATTTTGCTAGTTAGCCTTAAAAGCACAAAGCAGACCTATAAAGTTCAATTTTACTGATAGAAAGCAAGAAATGGATGAATAGGATGTTAGCTGACAACCATGCAATtgaaacctcctttgtaaaaactatgagagtgagaaaacaatggcagtgaaggagatcggatctagccagcccctaccttgcctttgaccctcaagctgcctgtagttattcctgggtttaggctaatctgacttgtctctttgggagatattttattttattttat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=6209.000000
s hg38.chr19_GL949751v2_alt     63338 3 +   1002683 ttt
s panTro4.chr19              58997111 3 +  63644993 ttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55873359 3 +  60714840 tgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633722 3 - 106955855 ttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59921684 3 +  64156825 ttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54941312 3 +  59248254 ttt
i macFas5.chr19             I 130 C 0
s papAnu2.chr19              47057177 3 +  51301725 ttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46768365 3 +  50890351 ttt
i chlSab2.chr6              C 0 I 249
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=5096.000000
s hg38.chr19_GL949751v2_alt     63341 2 +   1002683 at
s panTro4.chr19              58997114 2 +  63644993 at
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55873362 2 +  60714840 at
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633725 2 - 106955855 at
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59921687 2 +  64156825 at
i rheMac3.chr19             C 0 I 305
s macFas5.chr19              54941315 2 +  59248254 at
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47057180 2 +  51301725 at
i papAnu2.chr19             C 0 I 246
s chlSab2.chr6               46768617 2 +  50890351 at
i chlSab2.chr6              I 249 I 1
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=-310.000000
s hg38.chr19_GL949751v2_alt     63343 1 +   1002683 a
s panTro4.chr19              58997116 1 +  63644993 a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55873364 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633727 1 - 106955855 t
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I
e chlSab2.chr6               46768619 1 +  50890351 I
e papAnu2.chr19              47057182 246 +  51301725 I
e macFas5.chr19              54941317 1 +  59248254 I
e rheMac3.chr19              59921689 305 +  64156825 I

a score=343570.000000
s hg38.chr19_GL949751v2_alt     63344 192 +   1002683 tttccttgagacggagtctcgctctgtagcccgggctggagtgcagtggtgagatctcggttcaccgcaacctctgcatcctagttcaagggattctcctgcctcagcctccagagtagctggaattacaggtgcctgccaccatgcccgattaatttttgtatttttagtagagacgaggtttcaccatgt
s panTro4.chr19              58997117 192 +  63644993 tttccttgagacggagtctcgctctgtagcccgggctggagtgcagtggtgagatctcggttcaccgcaacctctgcatcctagttcaagcgattctcctgcctcagcctccagagtagctggaattacaggtgcctgccaccaagcccgactaatttttgtatttttagtagagacgaggtttcaccatgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55873365 192 +  60714840 tttccttgagacggagtctcactctgtagcccaggctggagtgcagtggtgcgatctcggttcaccgcaacctctgcctcctagttcaagcgattctcctgcctcagcctccagagtaactggaattacaggtgcctgccaccaagcccaactaatttttgtatttttagtagagatgaggtttcaccatgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102633728 192 - 106955855 tttccttgagacggagtctcactctgtagcccaggctggagtgcagtggtgcgatctcggttcaccgcaacctctgcttcctagttcaagtgattctcctgcctcagcctccagagtagctggaattacaggtgcctgccaccaagcccgactaatttttgtatttttagtagagacaaggtttcaccatgt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54941318 192 +  59248254 tttccttgagatggagcctcactctgtagcccaggctggagtgcagtggtgcaatctcagttcaccgcaacctctgcctcctagttcaagcgattctcctgcctcagcctccagagtagctggaactacaggtgcctgccaccatgcccgactaatttttgtatttttagtagagacgaggtttcaccatgt
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47057428 192 +  51301725 tttccttgagatggagcctcactctgtagcccaggctggagtgcagtggtgcaatctcggttcaccgcaacctctgcctcctagttcaagcgattctcctgcctcagcctccagagtagctggaactacaggtgcctgccaccatgcccgactaatttttgtatttttagtagagacgaggtttcaccatgt
i papAnu2.chr19             I 246 C 0
s chlSab2.chr6               46768620 170 +  50890351 tttccttgagatggagcctcactctgtagcccagactggagtgcagtggtgcaatctcggttcaccgcaacctctgcctcctagttcaagcgattctcctgcctcagcc----------------------gtgcctgccaccatgcccgactaatttttgtatttttagtagagacaaggtttcaccatgt
i chlSab2.chr6              I 1 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I
e rheMac3.chr19              59921689 305 +  64156825 I

a score=287599.000000
s hg38.chr19_GL949751v2_alt     63536 122 +   1002683 tggccaggctggtctgaaactcctgacctcaagagatccgcccgccttggcctcccaaagtgctgggattagaggaaagaaggaaagg-aaggaaaagaaaggaaaagagaggagaggagagg-----
s panTro4.chr19              58997309 122 +  63644993 tggccaggctggtctgaaactcctgacctcaagtgatccacccgccttggcctcccaaagtgctgggattagaggaaagaaggaaagg-aaggaaaagagaggaaaagagaggagaggagagg-----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55873557 123 +  60714840 tggccaggctggtctgaaactcctaatctcaagtgatccgcccgccttggcctcccaaagtgctgggattagaggAAAGaaggaaaggaaaagaaaggaaaggaaaggaaaggaaaggaaagg-----
i ponAbe2.chr19             C 0 I 341
s nomLeu3.chr10             102633920 122 - 106955855 tggccaggctggtctgaaactcctgacctcaagtgatccgctcaccttggcctcccaaagtgctgggattagaggaaagaaggaaagg-aaggaaaagtaaggaaaagagaggagaggagagg-----
i nomLeu3.chr10             C 0 I 5
s rheMac3.chr19              59921994 127 +  64156825 tggccagactggtctgaaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattagaggAAAGaaggaaagg-aaggtaagaaaaggaaaagaaaggaaaggaaagggaggg
i rheMac3.chr19             I 305 C 0
s macFas5.chr19              54941510 127 +  59248254 tggccagactggtctgaaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggaaagaaggaaagg-aaggtaagaaaaggaaaagaaaggaaaggaaagggaggg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47057620 127 +  51301725 tggccagactggtctgaaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattagaggaaagaaggaaagg-aagggaagaaaaggaaaagaaaggaaaggaaagggaggg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46768790 127 +  50890351 tggccagactggtctgaaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattagaggAAAgaaggaaagg-aagggaagaaaaggaaaagaaaggaaaggaaagggaggg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=127964.000000
s hg38.chr19_GL949751v2_alt     63658 172 +   1002683 ggaggggagggg------------aagggagagaaaggaaagga--------------------------aagggagaga-----aagggaag--------------------------------------------------------------------------------------------------agagaaagaaagaagaaaagagagaaagaaagaaagaaagaaagaaag-------------------------------------------------------------------------------------a---aaaat---------------------------------------aaagaaagaagaa---aaaagaaaa-gagaaaaggaagg-----------------------agggagggagggaggcaaggaaggaaggaagca
s panTro4.chr19              58997431 180 +  63644993 ggaggggagggg------------aagGgagagaaaggaaaggg--------------------------aagagagaaagaaagaagaaaag--------------------------------------------------------------------------------------------------agagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag-------------------------------------------------------------------------------------aaagaaagt---------------------------------------aaagaaagaagaa---aaaagaaaa-gagaaaaggaagg-----------------------agggagggactgaggcaaggaaggaaggaagca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102634047 246 - 106955855 ggaggggagggg------------aagggagagaaaggaaagggtgagaaagggaagagagaaagaagaaaagagagaaagaaagaaggaaagggtgagaaagggaagagataaagagagaaagaagaa-------------------------------------------------------------aagagaaagaaagaaggaaagaaagaaagaaggaaagaaagaaagaaag-------------------------------------------------------------------------------------agagaaaaa---------------------------------------gaggaaggaaggaaggaagagaaaa-gaaaaaagaaagg-----------------------agggagggagggagggaaggaaggaaagaagga
i nomLeu3.chr10             I 5 I 8
s rheMac3.chr19              59922121 207 +  64156825 ggaggggagggg------------aagggagagaaaggaaagga--------------------------aagggagaga-----aagggaaTAGT----------------------------------------------------------------------------------------------GAGAGAAAGAAGAAAAGAGAG------------------------AGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggaa----------------------------------------------------------------------------ggaag-----------------------gaaaggaaaggaaaggaaaggaggaaggaagga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54941637 188 +  59248254 ggaggggagggg------------aagggagagaaaggaaagga--------------------------aagggagaga-----aagggaatagt----------------------------------------------------------------------------------------------gagagaaagaagaaaagagagaaagaaagagaaagaaagaaagaaagag-------------------------------------------------------------------------------------aaagaaag------agaaagagag------------------------aaagagagagaga---gaaagagag-gaaggaaggaaag-----------------------gaaaggaaaggaaaggaaaggaggaaggaagga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47057747 320 +  51301725 ggaggggagggggaggggaggggaaggggagagaaaggaaagga--------------------------aagggagaga-----aagggaatagtgagagaaagaaga---aaagagagaaagaatgagagaaagaagaaaaagagagaaagaaagagagaaagaaggaaagaaagaaagaaagagagagagagagagaaagaaagaaagaaagaaagagaaagaaaaagaaagaaag-------------------------------------------------------------------------------------aaagaaagaaagaaagaaagaaag------------------------aaagaaagaaaaa---gaaagaaaa-gaaagaaagaaagagaaagagaaagagaggaaggaaggaaggaaaggaaaggaaaggaggaaggaagga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46768917 272 +  50890351 ggaggggagggg------------aagggagagaaaggaaagga--------------------------aagggagaga-----aagggaaTAGTGAGagaaagaaga---aaagagagaaagaaaaa-------------------------------------------------------------gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag-------------------------------------------------------------------------------------aaagaaagaaagaaagaaagaaagaaaggaagaaagaaagaaaaaagaaaagagagagaga---gaaagaaagagaaagaaagaaagagagagagaaaaagaggaaggaaggaaggaaaggaaaggaaaggaggaaggaagga
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e ponAbe2.chr19              55873680 341 +  60714840 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=75688.000000
s hg38.chr19_GL949751v2_alt     63830 35 +   1002683 agaaagagagaaagagagaaaAGAGGCTCCTTATA
s panTro4.chr19              58997611 35 +  63644993 agaaagagagaaagagagaaaAGAGGCTCCTTATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874021 35 +  60714840 agaaagaaagaaagggaGAAAAGAGACTCCTTATA
i ponAbe2.chr19             I 341 C 0
s nomLeu3.chr10             102634301 35 - 106955855 agaaagaaagaaagggagaaaAcaggctacttata
i nomLeu3.chr10             I 8 C 0
s rheMac3.chr19              59922328 35 +  64156825 aggagggaaggaagggagaaaagaGGTTCCTTATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54941825 35 +  59248254 aggagggaaggaagggagaaaagaGGTTCCTTATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47058067 35 +  51301725 aggagggaaggaagggagaaaagaggttccttata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46769189 35 +  50890351 aggagggaaggaagggagaaAAGAGGTTCCTTATA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19564854 888 - 122678785 I
e calJac3.chr22              45332635 245 +  49145316 I

a score=402849.000000
s hg38.chr19_GL949751v2_alt     63865 127 +   1002683 AATAACAAAAGACACCCTTCTCACCAAGGGTTTTTGGAAATTCCAGAGTGATGGGGTGAGAAGGGTGTCTTTggaaccaaagctgaagaccaagtacatatttcttactatatcacggtatcacggg
s panTro4.chr19              58997646 127 +  63644993 AATAACAAAAGACACCCTTCTCACCAAGGGTTTTTGGAAATTCCAGAGTGATGGGGTGAGAAGGGTGTCTTTggaaccaaagctgaagaccaagcacatatttcttactatatcacgatatcacggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874056 127 +  60714840 AAAAACAAAAGACACTCTTCTCACCAAGGGTTTTTGGAAATTCCAGAGTGATGGGGTGAGAAGGGTGTCTTTggaaccaaagctgaagaccaaatacgtatttcttactatatcacGATATCACggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102634336 127 - 106955855 aataacaaaagacacccttctcaccaaggatttttggaaattccagagtgacggggtgagaagggtgtctttggaaccaaagctgaagaccaaatacatatttcttactatatcacgatatcacggg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59922363 127 +  64156825 AATAacaaaagacacccttctcaccaagggtttttggaaattccagagtgatggggtgagaagggtgtctttggaaccagagctgaagaccaaatacatatttcttactatatcacgatatcacagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54941860 127 +  59248254 AATAACAAAAGACACCCTTCTCACCAAGGGTTTTTGGAAATTCCAGAGTGATGGGGTGAGAAGGGTGTCTTTggaaccagagctgaagaccaaatacatatttcttactatatcacgatatcacagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47058102 127 +  51301725 aataacaaaagacacCCTTCTCACCAAGGGTTTTTGGAAATTCCAGAGTGATGGGGTGAGAAGGGTGTCTTTGGAACCAGAGCTGaagaccaaatacatatttcttactATATCACGATATCACAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46769224 127 +  50890351 AATAACAAAAGACACCCTTCTCACCAAGGGTTTTTGGAAATTCCAGAGTGATGGGGTGAGAAGGGTGTCTTTggaaccagagctgaagatcaaatacatatttcttactatatcacgatatcacagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45332880 126 +  49145316 aataACAAAAGACACCCTTCTCA-CGAGGATTTTTGGAATTTCCAGAGTGACGGGGTGAGAAGGGGGTCTTTggaaccagagctgaagaccaaacacgtatttctcactatatcacaatatcgcagg
i calJac3.chr22             I 245 C 0
e canFam3.chr1               19564854 888 - 122678785 I

a score=763349.000000
s hg38.chr19_GL949751v2_alt     63992 238 +   1002683 aggtaaaacggaggtggccttgaagcagctcctccccagcccccaatcctcttgtgtgcccggaggatcagaagaggtcccgccgagactcagcttagctgtggttcaagcctctgattgcgtgga----taag-----------------taccaggtttccagagt-----------------------gccagggcggggctg-cc----cctTGCGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATGGGTCCTG-------------TT
s panTro4.chr19              58997773 238 +  63644993 aggtaaaacggaggtggccttgaagcagctcctccccagcccccaatcctcttgtgtgcccggaggatcagaagaggtcccgccgagactcagcttagctgtggttcaagcctctgattgcgtgga----taag-----------------taccaggtttccagagt-----------------------gccagggcggggctg-cc----cctTGCGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATGGGTCCTG-------------TT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874183 255 +  60714840 aggtaaaacggaggtggccttgaagcagctcctccccagcccccaatcctcttgtgtgcccggaggatcagaagaggtcccgccgagactcagcttagctgtggttcaagcctctgattgggtggA----TAAAGCACGCAATCCTTTCCTTTCCAGGTTTCCAGAGT-----------------------GCCAGGGCAGGGCTG-CC----CCTTGGGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATGGGTCCTG-------------TT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102634463 238 - 106955855 aggtaaaacgg-ggtggccttgaagcagctcctccccagcccccaatcctcttgtgtgcctggaggatcagaagaggtcctgccgagactcagcttagctgtggttcaatcctctgattgcacaga----taag-----------------taccaggtttccagagt-----------------------gccagggcagggctgccc----ccttgcGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACATGATCTTCAGATGGGTCCTG-------------TT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59922490 252 +  64156825 aggtaaaagggaggtgcccttgaagcagctcctccccagcccccaatcctcttgtgtgcccggaggatcagaagaggtcccgccaagactcagcttagctgtggttcaagcctctgattgcgtgga----taaa-----------------taccaggtttccagagt-----------------------gccagggcagggctgccc----ccttgcGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATAGGTCCTGTTTCAACTGAACATT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54941987 252 +  59248254 aggtaaaagggaggtgcccttgaagcagctcctccccagcccccaatcctcttgtgtgcccggaggatcagaagaggtcccgccaagactcagcttagctgtggttcaagcctctgattgcgtgga----taaa-----------------taccaggtttccagagt-----------------------gccagggcagggctgccc----ccttgcGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATAGGTCCTGTTTCAACTGAACATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47058229 252 +  51301725 AGGCAAAAGGGAGGTGCCCTTGAAGcagctcctccccagcccccaatCCTCTTGTGTGCCCGGATGATCAGAAGAGGTCCCGCCAAGACTCAGCTTAGCTGTGGTTCAAGCCTCTGATTGCGTGGA----TAAA-----------------TACCAGGTTTCCAGAGT-----------------------GCCAGGGCAGAGCTGCCC----CCTTGAGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATAGGTCCTGTTTCAACTGAACATT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46769351 252 +  50890351 aggtaaaagggaggtgcccttgaagcagctcctccccagcccccaatcctcttgtgtgcccggaggatcagaagaggtcccgccaagactcagtttagctgtggttcaagcctctgattgcgtgga----taaa-----------------taccaggtttccagagt-----------------------gccagggcagggctgccc----ccttgcGGTGGCATTAACTTTCCATGGCTATTT-AAAATCAGCAGAGGACACACGATCTTCAGATAGGTCCTGTTTCAACTGAACATT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45333006 249 +  49145316 aggtgaaagggagatggcctcgaagcagctcctccacaccccctaatcct---------------gatcggaaga-gtcctgccaagactcagcctagctgtggttcaagcctctgattgcggggatggttaag-----------------taccagatttccagagTCTTTTGAATATTCTCAGTTTATGACCAGCGCAGCGCTGCCC----CCTTGTGGTGGCACTAACTTTGCACAGCTATTT-AAAATAAGCAGTGGACACACCATCTTCAGA-------------GACTGAACAT-
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19565742 244 - 122678785 aggtgagtgggagatgggctcacagcagctcctcacaaacctcccatccttgcgtgttccagtgggatcataaggcattgtgcccggactcagattagctgcagttcaagcctctgactgtgtagc----catg-----------------tgaagggtttccaggat-----------------------gccatagcagagccCCCCACCACCTTCCCGTGGCATGAACTTTCCATAGTTCTTTAAAAATAAGCAatgggtacaagatctccagaaggatgttg-------------tt
i canFam3.chr1              I 888 I 1177

a score=136054.000000
s hg38.chr19_GL949751v2_alt     64230 43 +   1002683 TTACTTCCATATTTTCTCCTAGAGAGAAGAAAAATCATTAAAC
s panTro4.chr19              58998011 43 +  63644993 TTACTTCCATATTTTCCCCTAGAGAGAAGAAAAATCATTAAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874438 43 +  60714840 TTACTTCCATATTTTCCCCTAGAGAGAAGAAAAATCATTAAAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102634701 43 - 106955855 TTACTTCCATATTTTCCCCTAGAGAGAAGAAAAATCATTAAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59922742 43 +  64156825 TTACTTCCATATTTTCCCCTGGAGAGAAGAAAAATCATTAAAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54942239 43 +  59248254 TTACTTCCATATTTTCCCCTGGAGAGAAGAAAAATCATTAAAC
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47058481 43 +  51301725 TTACTTCCATATTTTCCCctggagagaagaaaaatcattaaac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46769603 43 +  50890351 TTACTTCCATATTTTCCCCTGGAGAGAAGAAAAATCATTAAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45333255 40 +  49145316 ---CCTCCATATTTTCCCCAAGAGAGAAGAAAAATCATTAAAC
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19565986 1177 - 122678785 I

a score=574939.000000
s hg38.chr19_GL949751v2_alt     64273 344 +   1002683 ttttttttgtttgttttttgtttttttgttttattcgttgttttt-tttttttttttttttttttgagacggagtctcgctc-tgtggcccaggctggagtgcaatggcgtg-tatcagctcactgcaacctctgcctccagggttcaagtgattctcctgcctcagcctcccgagtagctgggattacag-------------------------ctttgtatttttagtagagtcggggtttcactatattggccagggtggtctccaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggattacaggcgtgaaccaccgcacctggcctactgtat-tttttttttttttttt-
s panTro4.chr19              58998054 337 +  63644993 TTTTTTTTGT---TTTTTTGTTTTATTGGT------Gttatttttatttatttatttatttttttgagacggagtctcactc-tgtggcccaggctggagtgcaatggcgtg-tatcagctcactgcaacctccacctccagggttcaagtgattctcctgcctcagcctcccgagtagctgggattacag-------------------------ctttgtatttttagtagagtcggggtttcactatattggccagggtggtctccaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggattacaggcgtgaaccaccgcacctggccTACTGtatatatatatatatttttt-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874481 326 +  60714840 TTTTTTCTGTTTGttttttgtttttttgt-----------------tttattggtttttttttttgagacggagtctcgctc-tgtcacccaggctggaatgcaatggcatg-tatcggctcactgcaacctctgcctccagggttcaagtgattctcctgcctcagcctcccgagtagctgggattactg-------------------------ctttgtatttttagtagagtcggggtttcactatattggccaggctggtctccaactcctgacctcaggtgatctgcctgccttggcctccgaaactgctgggattacaagtatgaaccaccgcacctggccTACTGt---tttttttttttttttt-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102634744 342 - 106955855 tttttttcgtttgttttttgtttttttgttttattgttttttttgtttttgtttttgttttttttgagacagagtctcgctc-tgtcgcccaggctggagggcaatggcgtgatatcggctcactgcaacctctgcctccagggttcaagtgattctcctgcctcagcctcctgagtagctgggattacag-------------------------ctttctatttttagtagagtcgggatttcactatattggcctggctggtctccaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggattacaggcgtgaaccaccgcacctggccTACTGtat-----tttttgtttttt-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59922785 319 +  64156825 ----------------------------------------------Gtttctttttgggtttttttagacagagtctcactc-tgtcgcccaggctggagtgcaatggcgcaatatcagctcactgcaacctctgcctcctgggttcaagtgattctccggccttagcctcccgagtagctgggattacaggcgcccactaccatgcccagcacatttttgcatttttagtagagtcagggattcactatattggccaggctggtctccaactcctgacctcaggtgatctgcctgccttagcctcccaaagtgctgggattataggcatgagccaccgggcctggccTA-------TTTTTGTTTTTGTTTT-
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47058524 319 +  51301725 ----------------------------------------------gtttctttttgggtttttttagacagagtctcactc-tgtcgcccagcctggagtgcaatggcgcaatatcagctcactgcaacctctgcctcctgggttcaagtgattctcctgccttagcctcccgagtagctgggattacaggcgcccactaccatgcccagcaaatttttgcatttttagtagagtcagggtttcactatattggccaggctggtctccaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccaccgggcctggccta-------tttttgtttttgtttt-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46769646 319 +  50890351 ----------------------------------------------Gtttctttttgggttttttaagacagagtctcactc-tgtcgcccaggctggagagcaatggtgcaatatcagctcactgcaacctctgcctcctgggttcaagtgattctcctgccttagcctcccgagtagctgggattacaggcgcccactactatgcccagcaaatttttgtatttttagtagagtcggggtttcattatattggccaggctggtctccaactcctgagctcaggtgatctgcctgccttggcctcccaaattgctgggattataggcatgagccaccgggcctggccTA-------TTTTTGTTTTTGTTTT-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45333295 316 +  49145316 ------------------------------------------------------tttttttttttgagatggaggtttgctcttgtaacccaggctggagcccagagctgcgatctcggctcactgcaacgtccgcctcccaggttcaagtgattctcctgcctcagtctcccgagtagctgggattacaggcatgcaccaccacaccaagcgaattttttcattcttagtagagatgggatttcactatatcggccaggctggtctcaaactcctgacctt--gtgatccacccaccttggcatcccaaagtgctgagatcacaggcgtgagccacagtgcccggcATCACACA--TTTTTATTCGTTTTTCT
i calJac3.chr22             C 0 I 1953
e canFam3.chr1               19565986 1177 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=251456.000000
s hg38.chr19_GL949751v2_alt     64617 135 +   1002683 GAATAGAGAAGGGAgtctcaaactcttggcctcaagccatcctcctgcctcagtttcccaaaatgctgggattat---gagtgagccactgcaccTATCCCACCCCCTCCCaccctcatttttagaagggcacaggct
s panTro4.chr19              58998391 135 +  63644993 aaataGAGAAGGGAgtctcaaactcttggcctcaagccatcctcctgcctcagcttcccaaaatgctgggattat---gagtgagccactgcaccTATCCCACCCCCTCCCaccctcatttttagaagggcacaggct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874807 137 +  60714840 aaataaaGAAGGGAgtctcaaactcctggcctcaagccatcctcctgcctcagcctcccaaaatgctgggattat-aagagtgagccactgcaccTATCCCACCCCCTCCCaccctcatttttagaagggcacaggct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102635086 137 - 106955855 taatagagaagggagtctcagactcctggcctcaagccatcctcctgcctcagcctcccaaaatgctgggattat-aagagcaagccactgcaccTATCCCACCCCCTCCCACCCTCATTTTTAGAAGGGCACAGGCT
i nomLeu3.chr10             C 0 M 1542
s rheMac3.chr19              59923104 138 +  64156825 TAATAGAGAAGGGAgtctcaaactcctggcctcaagctatcctcctccctcagcctcccaaagtgctgggattgttaagagtgagccactgcaccTATCCCACCCCCTCCCACCCTCATTTTTAGAAGGGCACAGGCT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47058843 138 +  51301725 taatagagaagggagtctcaaactcctggcctcaagctatcctcctgcctcagcctcccaaagtgctgggattgttaagagtgagccactgcacctatcccaccccctcccaccctcattTTTAGAAGGGCACAGGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46769965 138 +  50890351 TAATAGAGAAGGGAgtctcaaactcctggcctcaagctatcctcctgcctcagcctcccaaagtgctgggattgttaagagtgagccactgcaccTATCCCACCCCCTCCCaccctcatttttagaagggcacaggct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=20340.000000
s hg38.chr19_GL949751v2_alt     64752 17 +   1002683 agagaccatatttccat
s panTro4.chr19              58998526 17 +  63644993 agagaccatatttccat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874944 17 +  60714840 agagaccatatttcctt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59923242 17 +  64156825 AGAGACCATATTTCCAT
i rheMac3.chr19             C 0 I 2242
s papAnu2.chr19              47058981 16 +  51301725 AGAGACCATATTTCCA-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46770103 17 +  50890351 agagaccatatttccat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e macFas5.chr19              54942282  1 +  59248254 I

a score=32868.000000
s hg38.chr19_GL949751v2_alt     64769 48 +   1002683 cagtcacttttgcggctagacctgtccatgagactaagttctagccaa
s panTro4.chr19              58998543 48 +  63644993 cagtcacttttgcggctagacctggccatgagactaagttctagccaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55874961 48 +  60714840 cagccacttttacggctagacctggccatgagactaagttctagccaa
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47058997 39 +  51301725 ---------TAGTGGCTAGGCCTGGCCATGAGACTAAGTTccaccaca
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46770120 48 +  50890351 cagtcacttttgtggctagacctggccatgagactaagttcCACCACA
i chlSab2.chr6              C 0 I 51
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt     64817 1 +   1002683 t
s panTro4.chr19              58998591 1 +  63644993 t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875009 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47059037 1 +  51301725 t
i papAnu2.chr19             I 1 I 25
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770168 51 +  50890351 I
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=9221.000000
s hg38.chr19_GL949751v2_alt     64818 36 +   1002683 gggatgcgataggaagatacatgctcaaattctagg
s panTro4.chr19              58998592 36 +  63644993 gggatgcggtaggaagatatatgctcaaattctagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875010 36 +  60714840 gggatgcaataagaagatatatgctcaaattctagg
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770168 51 +  50890351 I
e papAnu2.chr19              47059038 25 +  51301725 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=5469.000000
s hg38.chr19_GL949751v2_alt     64854 21 +   1002683 tcctgctcttaaaAAATAATT-
s panTro4.chr19              58998628 21 +  63644993 tcctgctcttaaaaaATAATT-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875046 21 +  60714840 tcctgctctaaaaaAATAATT-
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47059063 22 +  51301725 TCCTAATCTTTATATAAGATCT
i papAnu2.chr19             I 25 I 2
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770168 51 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=201974.000000
s hg38.chr19_GL949751v2_alt     64875 267 +   1002683 GTGTGggccgggcgcagtggctcacgcctgtaatcccagtactttgggaggctgaggcaggcggatcac--gaggtcaggaaatcgagaccatcctggataacacggtgaaaccccgtctctactaaaaatacaaaaaaatttagccgggtgtggtggtggacgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggc
s panTro4.chr19              58998649 266 +  63644993 GTGTGggccgggcgcagtggctcacgcctgtaatcccagtactttgggaggctgaggcaggcggatcac--gaggtcaggaaatcgagaccatcctggataacacggtgaaaccccgtctcgactaaaaatacaaaaaaa-ttagccaggcgtggtggtggacgcctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcattgagtcgagatcacgccactgcactccagcctgggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875067 267 +  60714840 GTGTGggccaggcgcggtggttcacacctgtaatcccagtaccttggaaggctgaggggggcggatcac--gaggtcaggagatcgagaccatcctggataacacggtgaaaccccgtctctactgaaaatacaaaaaaaattagccgggcgtggtggtggacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagtcgagatcacgccactgcactccagcctgggt
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47059087 265 +  51301725 gttagggccgggcacagtggcttacgcctgtaatcctagcactttgggaggccgaggcaggtggatcacctgaggtcgggagttcgagaccagcctgatcaacatggagaaaccccgtctctactacaaatacgaaa----ttagctgggcatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcagaagaatcgcttgaacccgggaggcagaggttgtggtgagccgagatcgtgccatggcactccagcctgggc
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               46770219 265 +  50890351 GTGAGggccgggcgcagtggctcatgcctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggtcgggagttcaagaccagcctgatcaacatggagaaaccctgtctgtactacaaatacaaaa----ttagctgggcatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcagaagaattgcttgaacccgggaggcagaggttgcggtgagccgagatcgtgccattgcactccagcctgggc
i chlSab2.chr6              I 51 I 1179
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=11464.000000
s hg38.chr19_GL949751v2_alt     65142 36 +   1002683 -gacagagcaagactccaactcggaaaaaaaaaaaaa
s panTro4.chr19              58998915 35 +  63644993 -gacagagcaagactccaactcgg-aaaaaaaaataa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875334 34 +  60714840 -gacagagcgagactccatctcag--aaaaaaaataa
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47059352 37 +  51301725 aatgagagcaaaactctgtctcaaaaaaaaaaaaaaa
i papAnu2.chr19             C 0 I 1323
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770484 1179 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=273.000000
s hg38.chr19_GL949751v2_alt     65178 1 +   1002683 t
s panTro4.chr19              58998950 1 +  63644993 t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875368 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               19565986 1177 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=58931.000000
s hg38.chr19_GL949751v2_alt     65179 177 +   1002683 aataaTTGTGTGAGCCCTTTTCTCTCTGTCCTCTCCTCTTTCTT--------GGGGCTCAGAACCAGAAATTAAAGCTACATGTTGATAAAAGCAAAACCATCCCACCTTAACAAGTAAATCGT-TGAGATTG-CCCAGTGATTTACTGTTAAGTGAGAGAGAGGTACATTTATATCTAGTTTTTTT
s panTro4.chr19              58998951 173 +  63644993 aataaTTGTGTGAGCCCTTTTCTCTCTGTCCTCTCCACTTTCTT--------GGGGCTCAGAACCAAAAATTAAAACTACATGTTGATAAAAGCAAAACCATCCCACCTTAACAAGTAAATCGT-TGAGATTG-CCCAGTGATTTACTGT----TGAGAGAGAGGTACATTTATATCTAGTTTTTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875369 177 +  60714840 aataaTTGTGTGAGCCCTTTTCTCTCTGTCCTCTCCACTTTCTT--------GGGGCTCAGAACCAGAAATTAAAGCTACATATTGATAAAAGCAAAACCATCCCACCTTAACAAGTAAATCGT-TGAGATTG-CCCAGTGATTTACTGTTAAGTGAGAGAGAGGTACATTTATATCTAGTTTTTTT
i ponAbe2.chr19             C 0 C 0
s canFam3.chr1               19567163 172 - 122678785 aatgattgttt----ctctctgtctctgtctttctctcttcctcctttcatgctgcctCAGAACCACACCGGAAAACTGCATGTTGACAAGAGCAAAGCTGTT-----------GGTAAACAGTCCCAGACTGTTTCAACTATATACTGTGAAGTGAAAGAGACATAAAATCATAATAGGTTTTTTT
i canFam3.chr1              I 1177 I 8
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=86474.000000
s hg38.chr19_GL949751v2_alt     65356 335 +   1002683 CCGGTGGTGAAGGAGATtctttttttctctctctctctcttttttatgagatggagcttggctcttgttgcccaggctggagtgcaatggcacgacctcggctcagtgaaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccacaccaggctaattttttgtatttagtagagacagggtttcaccatgttaatcaggctgctctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctaggattacaggtgtgcgccactgcacctggccGGGAGA
s panTro4.chr19              58999124 334 +  63644993 CCGGTGGTGAAGGAGAttc-ttttttctctctctctctcttttttattagatggaggttggctcttgttgcccaggctggagtgcaatggcacgaccttggctcactgaaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccacaccaggctaattttttgtatttagtagagacggggtttcaccatgttaatcaggctgctctcgaactcctaacctcaggtgatccacctgccttggcctcccaaagtgctaggattacaggtgtgcgccactgcacctggccGGGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875546 327 +  60714840 CCGGTGGTAAGGGAGAttc-tttttt-------tctctcttctttatgagatggagcttggctcttgttgcccaggctggagtgcaatggtatgacctccactcactgaaacctccgcctcccaggttcaagtgattctcctgcctcagccccctgagtagctgggattacaggcatgcaccaccacaccaggctaattttttgtatttagtagagacggagtttcaccatgttagtcaggctgctctcgaactcctgacctcaggtgatccacccgtcttggcctcccaaagtgctaggattacaggtgtgtgccactgcacctggccGGGAGA
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               19567335   8 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=102014.000000
s hg38.chr19_GL949751v2_alt     65691 286 +   1002683 TTCTTTTTTACAACAGCTTAAAGTGCTCTGTAACCAATACACTATGCAGTGATTTGGTTAATACTTt-----gtgagttccatgagtgcagggtttatgtctgctattgctccccactggaccgccggactctagcacaatg---ccatgcacggtagacattgaatacatgagtgatacgaggatgaat-GAGACTAGGGGAAATC---------------AGTGGAAGCCCTAggcctggcacagtgactcactcctggaatcccagcactttgggaggccaaggaaggaggatggcttgaggccagg
s panTro4.chr19              58999458 286 +  63644993 TTCTTTTTTACAACAGCTTAAAGTGCTCTGTAACCAATACACTATGCAGTGATTTGGTTAATACTTt-----gtgagttccatgagcgcagggtttacgtctgctattgctccccattggaccgccggactctagcacaatg---ccatgcacggtagacattgaatacatgagtgatacgaggatgaat-CAGACTAGGGGAAATC---------------AGTGGAAGCCCTAggcctggcgcagtgactcactcctggaatcccagcactttgggaggccaaggaaggaggatggcttgaggccagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55875873 286 +  60714840 TTCTTTTTTACAACAGCTTAAAGTGCTCTGTAACCGATACACTATGCGGTGATTTGGTTAATACTTt-----gtgagttccgtgagtgcagggtttacgtctgctattgctccccattggaccgccggactctagcacaatg---ccatgcacagtagacattgaatacatgagtgatacgtggatgaat-GAGACTAGGGGAAATC---------------AGTGGAAGCCCTAggcctggcgcagtgactcactcctggaatcccagcactttgggaggccaaggagggaggatggcttgaggccagg
i ponAbe2.chr19             C 0 C 0
s canFam3.chr1               19567343 289 - 122678785 TCTTTTTTTACATCAGCTCAAAGTGCTCCCTCATCAATACAGTGAGTAGCAATTTGGTTAATGCTTTTCTCAGCGagcatcatgagattagggtttatgcctgctgtcattccccgcttgtccccagcac-ccagcacagtgcccccccacatggagggcattgaaaaaatgtgtgccaagtggatgaatGGGGACCTGGGGGAAGCAAGATTGGGGACCGAAGTGTAAGTCCTAAG--------GGTGAA-CATACCTGGGTT--------TGTGGGAA---AAGGAAAGAGGTCTCATTGAAGCTAAG
i canFam3.chr1              I 8 I 2288
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=56804.000000
s hg38.chr19_GL949751v2_alt     65977 214 +   1002683 cattcaagaccagcctggacaacatggtgagatcccatagctataaaaagtaaacaattagccgggcgcggtggctcacgcctgtaattccagcactttgggaggccgaggggggtggatcacgaggtcaatagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagctgggcatggtggtggcaca
s panTro4.chr19              58999744 212 +  63644993 cattcaagaacagcctggacaacatggtgagaccccatagctataaaaaataaacaattagctgggcgcggtggctcacgcctgtaattccagcactttgggaggccgaggcgggcggatcacgaggtcaatagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagctgggcgtgttggtgg--ca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55876159 212 +  60714840 cattcaagaccagcttggacaacatggtgagaccccatagctataaaaaataaacaattagccgggtgcggtggctcacgcctgtaattccagcactttgggaggccgaggcgggcggatcacgaggtcaatagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagctgggcgtggtggtgg--ca
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               19567632 2288 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e nomLeu3.chr10             102635223 1542 - 106955855 M
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=744930.000000
s hg38.chr19_GL949751v2_alt     66191 1475 +   1002683 cgcctgtaatcccagcgactcgggagggcgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccgagatcgcgtcattgcactacagcctggcaacagagcgagactccatctc-aa----------------aaaaaaaataataataatagtaataataaattggccaggcgtggtgatggcagtgttgtcattgctttaagaggcaggaacagggggaAAAGACCCAGCAGTCTAACCACACAGACAAGTCCCAAGTTAGGCACTTCTGTGTGTCTTGGGGGCTGTT------GATCAGAAATAACCTATGTGGATCACCCAGCAAAATGACCAGTATGAAAAGATGTTCAGTGGTAGAAAATGAAATAAGCATTGTGACTACAACTCACTCAATAAGCATTCATTGAACACTGGTCACTGGTAAACTGCTATGAAGAAATCTCAgctgggtgcggtggctcacgcttgtaatcccagcactttaaagggagaccaaggtgggcagatggatcactttaggtcaagcgttcgagaacagcctggccaacatggtgaaaccccatctctactaaaaacacaaaattagccgggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacccgggaggtggagattgtagtgagctgagatcacaacactgcactccaacctgggaaacagagcaagactccatctcaaaaagaaaaaaaaTCTCAAGCTTATTGgatagataaatgcacaggtagatagatggatattgaatgaataaatagttcagtggattaaaa----actggttaatgaagaaatggatggg-taaatggatggaaatatgaatgaatgcatgatggataaggacaaatga---aatagacaaatgtacaaatgaaagcaaaggaaaaagagatgctcaatagaaatgaataaggatgagaatcaatgctagacatgaatgagtgaatggtgaatgaaggagtgattgaatggatgaatACATGGAGTTAAGTTGAAGTACAAACTCGGCCAAGACTTCTTTTTCTCTGCTTTGGGTGGAAATACATTTTTAAAAAAAGAGggccgggcacggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacctgagtttgggagttcgaggccagcctgaccaacacagagaaaccctgtttctactcaaaatacaaaattagccaggtgtggtggctcacacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgtggtgagccgagatggcgccattgcactccagcctgggcaacaagagcgaaagtccacctcaaaaaaaata-----aaataa----aataaaataaaataaaaaaagagggaaaaagg--aaaaaaaaagaCtccctgatgtgccactgacttcctgtacatgtttagg
s panTro4.chr19              58999956 1488 +  63644993 cgcctgtaatcccagcgactcgggaggccgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcgtcattgcactacagcctggcaacagagcgagactccatctcaaa----------------aaaaaaaataataataatagtaataataaATTGGCCAGGCGTGGTGATGGCAGTGTTGTCATTGTTTTAAGAGGCAGGAACAGGGGGAAAAGACCCAGCAGTCTAACCACACAGACAAGTCCCAAGTTAGGCACTTCTGTGTGTCTTGGGGGCTGTTGATAAAGATCAGAAATAACCTATGTGGATCACCCAGCAAAATGACCAGTATGAAAAGATGTTCAGTGGTAGAAAGTGAAATAAGCATTATGACTACATCTCACTCAATAAGCATTCATTGAACACTGGTCACTGGTAAACTGCTATGAAGAAATCTCggctgggtgcggtggctcacgcttgtaatcccagctctttaaagggagaccaaggtgggcagatggatcactttaggtcaagcgttcgagaacagcctggccaacatggtgaaaccccatctctactaaaaacacaaaattagccgggcatggtggcaggtgcctgtaatcccagctacttggcagcctgaggcaggagaatcgtttgaacccgggaggtggagattgtagtgagctgagatcacaacactgcactccaacctgggaaacagagcaagactccatctcaaaaagaaaaaaaaTCTCAAGCTTATtggatagataaatgcacaggtagatagatggatattgaatgaataaatagttcagtggattaaaa----actggttaatgaagaaatggatggg-taaatggatggaaatatgaatgaatgcatgatggataaggacaaatga---aatagacaaatgtacaaatgaaAGCAAAGGAAAAAGAGATGCTCAATAGAAATGAATAAGGATGAGAATCAATGCTAGACatgaatgagtgaatggtgaatgaaggagtgattgaatggatgaatACATGGAGTTAAGTTGAAGTACAAACTCGGCCAAGACTTCTTTTCCTCTGCTTTCGGTGGAAATACGTTTTTAAAAAAAGAGggccgggcacggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacctgagtttgggagttcgaggccagcctgaccaacacagagaaaccctgtttctactcaaaatacaaaattagccaggtgtggtggctcacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcggtgagcggagatggcgccattgcactccagcctgggcaacaagagcgaaagtccgcctcaaaaaaaaaaaaaataaataa----aataaaataaaataaaaaaagagggaaaaagg-aaaaaaaaaagaCtccctgatgtgccactgacttcctgtacacgtttagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55876371 1477 +  60714840 cgcctgtaatcccagtgactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgtgccattgcactccagcctggcaacagagtgagactccatctc-----------------------aaaataataataataataataataaattggccaggcgtggtgATGGCAGTGTTGTCATTGTTTTAAGAGGCAGGAACAGGGGGAAAAGACCCAGCAGTCTAAGCACACAGACAAGTCCCAAGTTAGGCACTTGTGTGTGTCTTGGGGGCTGTTGATAAAGATCAGAAATGACCTATGTGGATCACCCAGCAAGATGACCAGTATGAAAAGGTGTTCAGTGGTAGAAAGTGAAATTAGCATTATGACTACAACTCACTCAATAAGCATTCATTGAACACTGGTCACTGGTAAACTGCTATGAAGAAATCTCagctgggtgcggtggctcacgcttgtaatcccagcactttaaagggagaccaaggtgggcagatggattacttgagttcaggggttcgaaaacagcctggccaacatggtgaaaccccatctctactaaaaacacaaaattagctgggcatggtggcgggtgactgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacctgggaggtggagattgtagtgagccgagatcacaacactgcactccaacctgggaaacagagcgagactccatctcaaaaag-aaaaaaaTCTCAAGGTTATtggatagataaatgcataggtagattgacggatattgaatgaataaatagttgagtggattaaaaactgactggttaatgaagagatggatgggttaaatggatggaaatatgaatgaatgaatgatggataaagacaaatga---aatagacaaatgtacaaatgaaAGCAAAGGAAAAAGAGATGCTCAATAGA----AATAAGGATGAGAATCAACGCTAGACatgaatgagtgaacggtgaatgaaggagtgattgactggatgaatACACAGAGTCAAGTTGAAGTACAAACTCGGCCAAGACTCCTTTTTCTTCGCTTTGGGTGGAAATAAGTTTTTAAAAAAAGAGggctgggcacggtggctcacgcctgtaatcccagccctttgggaggccgaggcgggtggatcacctgagtttgggagttcgaggccagcctgaccaacatggagaaaccccgtttctactcaaaatacaaaattagccaggagtggtggcgcacgcctgtaatcccagctactcaggaggctgagccaggagaatcacttgaacctgggaggcagaggtcgcggtgagccgagatcgcgccattgcactccagcctgggcaacaagagcgaaactccgcctc-aaaaaaata-----taataatattaataaaataaaataaaaaAAGAGAGAAAAAGA-AAAAAAAAAAGACT-CCTGATGTG-CACTGACTTCCTGTACACATTTAGG
i ponAbe2.chr19             C 0 I 762
s nomLeu3.chr10             102636777 1497 - 106955855 cgcctgttatcccagcgactcaggaggatgaggcaggagaattgcttgaactcaggaggcagaggttgcagtgagacgagttcgcgccattgcactacagcctggcaacagagcgagactccatctcaaataataataataataataataataataataataataataataataaATTTGCCAGGCGTGGTGGTGGCAGTGTTGTCATTGTTTTAAGAGGCACGAACAGGGGGAAAAGACCCAGCAGTCTAACCACACAGACGAGTCCCAAGTTAGGCACTTGTGTGTGTCTTGGGGGCTGTTGATAAAGATCAGAAATAACCTATGTGGATCACCCAGCAAAATGACCAGTGTGAAAAGGTGTTCAGTGGTAGAAAGTGAAATTAGCATTATGACTACAACTCACTCAATAAGCATTCATTGAACACTGGTCACTGGTAAACTGCTATGAAGAAATCTCggctgggtgcagtggctcacgcttgtaatcccagcactttaaagggagaccaaggtgggcagatggatcacttgaggtcaggggttcgagaacagcctggccaacatggtgaaaccccatctctgctaaaaacacaaaattagccaggcatggtggcgggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgtttgaacccaggaggtggagattgtagtgagccgagatcacagcactgcactccaacctgggaaacagagcgagactccacctcaaaaag-aaaaaaaTCTCAAGGTTATTGGATAGATAAATGCATAGGTAGATTGACGGACATTGAATGAATAAATAGTTGAGTGGATTAAAAACTGACTGGTTAATGAAGAGATGGATGGG-TAAATGGATAGAAATATGAATGAATGAATGATGGATAAGGACAAGTGAAATAATAGACAAATGTACAAATGAAAGCAAAGGAAAAAGAGATGCTCAATAGAAATAAATAAGGATGAGAATCAACGCTAGACATGAATGAGTGAATGGTGAATGAAGGAGTGATTGAATGGAGGAATACATGGAGTCAAGTTGAAGTACAAACTCGGCCAACACTACTTTTTCTTTGCTTTGGGTGGAAATAAGTTTAAAAAAAAAGAGggccgggcacggtgactcacgcctgtaatcccagcagtttgggagactgaggcgggtggatcacctgagtttgggagttcgaggccagcctgaccaacatggagaaaccccgtttctactcaaaatacaaaattagccaggagtggtggcacacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaagcagaggtcatggtgagccgagatcacgccattgcactccagcctgggcaacaagagcgaaattccgtctcaaaaataata-------ataa-----------taaaataaaaaaagaGGGAAAAAGGAAAAAAAAAAAGACtccctgatgtgccactgacttcctctacacatttagg
i nomLeu3.chr10             M 1542 C 0
e canFam3.chr1               19567632 2288 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282    1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=104626.000000
s hg38.chr19_GL949751v2_alt     67666 415 +   1002683 taaacttaatatcacctctctttccaccattttcccatttataaagtgggaagactggatttgatgacatcacagcctcatccaggtctgGTGCCTTCCTTATAACCTGCGTCTCTTCtttattctttttttttttttttttttttttgagacggagttttgctctgtcacccaggctggagtgtgcagtgatgcaatctcggctcactacaacctccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgcccggctaatttttgtatttttagtagagacggggtttcaccatgttgtccaggctggtctcgaacttctgacttcgtgatccacctgcctcggcctcccaaagtgctaggatcacaggtgtgag
s panTro4.chr19              59001444 407 +  63644993 taaacttaatatcacctctctttccaccattttcccatttataaagtgggaagactggatttgatgacatcacagcctcatccaggtctgGTGCCTTCCTTATAACCTGCGtctcttctttattc--------tttttttttttttttgagacggagtttcgctctgtcacccagactggagtgtgcagtgacgcgatctcggctcactacaacctccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttgtccaggctggtctcgaacttctgacttcgtgatccgcctgcctcggcctcccaaagtgctaggatcacaggtgtgag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102638274 410 - 106955855 gaaacttaatatcgcctctctttccaccattttcccatttataaagtgggaagactggatttgatgacatcacagcctcatccaagtctgGTTCCTTCCTTATAACCTGGGTCTCTTCtttattc-tttttgtttttgtttttgttttgagacggagtttcg--ctgtcacccaggctgga--gtgcagtggtgcgatctcggctcactgcaatgtctgcctcctgggttcaagcaattatcctgcctcagcctcccgagtagctaggattacaggcacccgccaccacgcccggctaatttttgtatttttagtagacacggggtttcaccatgttggccaggctggtctcgaacttctgacttcgtgacccgcctgcctctgcctcccaaagtgctaggatcacaggtgtgag
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19567632 2288 - 122678785 I
e ponAbe2.chr19              55877848 762 +  60714840 I
e calJac3.chr22              45333611 1953 +  49145316 I
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=19940.000000
s hg38.chr19_GL949751v2_alt     68081 39 +   1002683 ccagcacccccggcTTATTCCTTTTTTAAAATTGTTATT
s panTro4.chr19              59001851 39 +  63644993 ccagcacccccggcTTATTCCTTTTTTAAAATTGTTATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55878610 39 +  60714840 CCAGCACCCCCGGCCTATTCCTTTTTTAGAATTATTATT
i ponAbe2.chr19             I 762 C 0
s nomLeu3.chr10             102638684 39 - 106955855 ccagcacccccagtcTATTCCTTTTTTAAAATTATTATT
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19567632 2288 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=102233.000000
s hg38.chr19_GL949751v2_alt     68120 163 +   1002683 ATTTCCCACAGCCACATA----TGCCGGGGAGGTTGTCCCACATATGTTCTACCAAGGCCC--CTCTGGCACTGAGATCAAACCCCGGAAGACCCGCTC---AGTCTCTCCTCCCGTCTTTTCAAC--ACGTTAGCGCCCCCAGGTGGCTAATTAGACTTCAAAA-TTCAGTTCT
s panTro4.chr19              59001890 163 +  63644993 ATTTCCCACAGCCACATA----TGCCAGGGAGGTTGTCCCACATATGTTCTACCAAGGCCC--CTCTGGCACTGAGATCAAACCCCGGAAGACCCGCTC---AGTCTCTCCTCCCGTCTTTTCAAC--ACGTTAGCGCCCCCAGGTGGCTAATTAGACTTCAAAA-TTCAGTTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55878649 165 +  60714840 ATTTCCCACAGCCACAAA----TGACAGGGAGGTTGTCCTGGATATGTTCTACCAAGGCCCGACGTTGGTACTGAGATCAAAGCCCAGAAGACCCGCTC---AGTCTCTCCTCCCATCTTTTCAAC--ACGTTAGTGCCCCCAGGTGGCTAATTAGACTTCAAAA-TTCAGTTgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102638723 165 - 106955855 ATTTCCCACAGCCACTTA----TGCCAGGGAGGTTGTCCCGGATATATTCTACCAAGGCCCCACGCTGCTACTGAGGACAAACCCCGGAAGACCCGTTC---AGTCTCTCCTCCCATCTTTTCAAC--ACGTCAGCGCCCCCACGTGGCTAATTAGACTTCAAAA-TTCAGTTCT
i nomLeu3.chr10             C 0 C 0
s canFam3.chr1               19569920 174 - 122678785 ACTTCCGATATCCACACACAGTTCACAGAGAGATTGCCCAGGACATGCTCCACAGGAGTCCC-CACTGGTACTAAGTGCAAACCCAGAAAGTCCTGCTTGGAAGTCCCTCCTCTTGTCTCTTCAGCAAAAGTCAATGAACCCAGGTGGCTACTTTGATTCCAAAATTTCAGTGCT
i canFam3.chr1              I 2288 I 1432
e calJac3.chr22              45333611 1953 +  49145316 I
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt     68283 1 +   1002683 T
s panTro4.chr19              59002053 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55878814 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102638888 1 - 106955855 T
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19570094 1432 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e chlSab2.chr6               46770484 1179 +  50890351 I
e papAnu2.chr19              47059389 1323 +  51301725 I
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=80258.000000
s hg38.chr19_GL949751v2_alt     68284 108 +   1002683 gaggcgggcggatcacttgaggtcaggagttcaagaccagtctggtcaacatggtgaaaccccgtctctactaaaaatac---aaacattagccggacatggtggtacgca
s panTro4.chr19              59002054 108 +  63644993 gaggtgggcggatcacttgaggtcaggagttcaagaccagtctggtcaacatggcgaaaccccgtctctactaaaaatac---aaacattagccggacatggtggtacgca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55878815 108 +  60714840 gaggcgggcggatcacctgaggtcaggagttcaagaccagtctggccaacatggcgaaaccccctctctactaaaaatac---aaacattagccagacatggtgttacgca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102638889 108 - 106955855 gaggcgggcggatcacctgaggtcaggagttcaagaccagtctggccaacgtggcgaaaccccgtctctactaaaaatac---aaacattagccagacatggtggcatgca
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47060712 108 +  51301725 gagacgggcggatcac--gaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaaatacaaaaaactagccgggcgaggtggcg-gcg
i papAnu2.chr19             I 1323 C 0
e canFam3.chr1               19570094 1432 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e chlSab2.chr6               46770484 1179 +  50890351 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=101500.000000
s hg38.chr19_GL949751v2_alt     68392 100 +   1002683 cctgtaatcccagctattcgggaggccgaggcaggtggatcacttgaggtcaggag----------------ttcgaga---------------cca-cctggccaatttggcaaaactccatctctactaa
s panTro4.chr19              59002162 101 +  63644993 cctgtaatcccagctattcgggaggccgaggcaggtggatcacttgaggtcaggag----------------ttcgaga---------------ccaccctggccaatttggcaaaactccatctctactaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55878923 101 +  60714840 cctgtaatcccagctattcggaaggccgaggcaggtggatcacttgaggtcaggag----------------ttcgaga---------------ccaccctggccaatttggcaaaactccatctctactaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102638997 101 - 106955855 cctgtaatcccagctatttgggaggccgaggcaggtggatcacttgaggtcaggag----------------ttcgaga---------------ccaccctggccaatttggcaaaactccatctctactaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47060820 132 +  51301725 cctgtagtcccagctacccgggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgagctgagatccggccactgcattccagcctgggcgacagagcgagactccgtctcaaaaaa
i papAnu2.chr19             C 0 I 17
s chlSab2.chr6               46771663 101 +  50890351 cctgtaatcccagcactttgggaggctgaggccgatggatcacttgaggtcaggag----------------tttgaga---------------ccaccctggccaatatggctaaactccatctctattaa
i chlSab2.chr6              I 1179 C 0
e canFam3.chr1               19570094 1432 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59923259 2242 +  64156825 I

a score=195938.000000
s hg38.chr19_GL949751v2_alt     68492 108 +   1002683 aaatacaaaaattagctgggcgtgat-agcgcacacctgtaatcccagctactcaggagactgaggcacgagaatcacttgaacccgggaggcggatgttgcagtgaac
s panTro4.chr19              59002263 108 +  63644993 aaatacaaaaattagctgggcgtgat-ggcgcacacctgtaatcccagctactcaggagactgaggcacgagaatcacttgaacccgggaggcggatgttgcagtgaac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55879024 108 +  60714840 aaatacaaaaattagctgggcgtgat-ggcgcacacctgtaatcccagctactcaggagactgaggcacgagaatcacttgaacccgggaggcagaggttgcagtgaac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102639098 108 - 106955855 aaatacaaaaattagctgggcgtgat-ggcgcacacctgtaatcccagctactcaggaggctgaggcacgagaatcatttgaacccaggaggcggagattgcagtgaac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59925501 108 +  64156825 aaatacaaaacttagctgggcgtggt-ggtgtacacctgtaatcccagctactcaggaggctgaggcacgagaatcacttgaacccaggaggcggaggttgcagtgaac
i rheMac3.chr19             I 2242 C 0
s papAnu2.chr19              47060969 108 +  51301725 aaatacaaaacttagctgggcgtggt-ggtgcacacccgtaatcccagctactcaggaggctgaggcacgagaatcacttgtacccgggatgtggaggttgcagtgaac
i papAnu2.chr19             I 17 C 0
s chlSab2.chr6               46771764 109 +  50890351 aaatacaaaacttagctgggcgtggtgggtgcacacctgtaatcccagctactcaggaggctgaggcacgagaatcacttgaacccaggaggcggaggttgcagtgaac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19570094 1432 - 122678785 I
e calJac3.chr22              45333611 1953 +  49145316 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=660226.000000
s hg38.chr19_GL949751v2_alt     68600 325 +   1002683 cgagatcacgccactgcactccagcctgggtg---gagtgagatcttctctc-aaaaaaaaaaaagaaagaaag------------aaagaaaaagtcgtgcttgatTATGCTTGA-TGGCAAAAAGGTGAGACCTTCCTTTCGGCACTGAGTCTGGTAGAAATCGGTGTTACAGGGtagctaacatttattgaacacttactacgggccagttactgctttaaatgttttatgtgtattacccactgaatcctacaacaatcctatgaagtgggttttatcagtgcatccattttaccgtcaaggcaagagagAGTTGGGGAAGGGCGCTTTCTGAATGCT
s panTro4.chr19              59002371 332 +  63644993 cgagaccacgccactgcactccagcctgggtg---gagtgagatcttctctcaaaaaaaaaaaaagaaagaaagaa------agaaaaAGAAAAAGTCGTGCTTGATTATGCTTGA-TGGCAAAAAGGTGAGACCTTCCTTTCGGCACTGTGTCTGGTAGAAATCGGTGTTACAGGGtagctaatatttattgaacacttactacgggccagttactgctttaaatgttttatgtgtattacccactgaatcctacaacaatcctatgaagtgggttttatcagtgcatccattttaccgtccgggcaagagagagctggggaaggGCGCTTTCCGAATGCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55879132 335 +  60714840 cgagatcgtgccactgcactccagcctgggtg---gagtgagatcttctctcaaaaaaaaaaaaaaaagaaaagaaaa---gaaaGAAAGAAAAAGTTGTGCTTGATTATGCTTGA-TGGAAAAAAGGTGAGACCTTCCTTTCGGCACTGAGTCTGGTAGAAATCGGTGTTACAGGGtagctaacatttattgagcacttactacgggccagttactgttttaaatgttttgtgtgtattacccactgaatcctacaacaatcctatgaagtgggttttatcagtgcatccattttaccgtcaaggcaagagagagttggggaagGGCGCTTTCTGAATGCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102639206 327 - 106955855 cgaaatggcgccactgcactccagcctgagtg---gagtgaaatcttctctcaaaaaaaaaaaaaaaaggaaag--------aaagaaaaAAAAAGTTGTGCTTGATCATGCTTGA-TGGAAAAAAGGTGAGACCTTCCTTTCGACACTGAGTCTGGTAGAAATCGGTGTTACAGGGtaactaacgtttattgagcact---tacgagccagtcactgttttaaatattttatgtgtattacccactggatcctacaacagtcctatgaagtgggttttatcagtgcatccattttaccgtcaaggcaaGACAGAGTTGGGGAAGGgtgctttctgaatgct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59925609 314 +  64156825 cgagatcgtgccactgccctccagcctgggtgatagagtgagatcttctctc--------------------------caaaaaaaaaaaaaaaaGTTGTGCTTGATTATGCTTGA-TGGAAAAAAGGTGAGACCTTCTTTTCGGCAATGAGTCTGGTAGAAATCGGTGTAATAGGGtagctcacattcattgagcacttactacgggccagttactgttttaaatgttttatatgtattacccactgaatcctacaacaatcctatgaaatggcttttatcagtgcatccatttcacCGTCCAGGCGAGAGAGAGTT-GGGAAGGGCGCTTTCTCAATGCT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061077 311 +  51301725 cgagatcgtaccactgcactccagcctgggtgatggagtgagatcttctctc-----------------------------aaaaaaaaaaaaaagttgtgcttGATTATGCTTGA-TGGAAAAAAGGTGAGACCTTCTTTTCGGCAATGAGTCTGGTAGAAATCGGTGTAATAGGGTAGCTcacattcattgagcacttactacGGGCCAGttactgttttaaatgttttatatgtattaccCACTGAATCCtacaacaatcctatgaaatGGGTTTTATCAGTGCATCCATTTCACCGTCCAGGCGAGAGAGAGTT-GGGAAGGGCGCTTTCTCAATGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46771873 340 +  50890351 cgagattgcgccactgcactccagcctgggtgatggagtgagatcttctctcaaaaaaaacaaaacaacaacaaaaaaaaaaaaaaaaaaaaaaaGTTGTGCTTGATTATGCTTGA-TGGAAAAAAGGTGAGACCTTCTTTTCAGCAATGAGTCTGGTAGAAATCGGTGTAATAGGGtagctcacattcgttgagcacttactacgggccagttactgttttaaatgttttatgtgtgttatgcactgaatcctacaacaatcctatgaaatgggttttatcagtgcatccatttcacCGTCCAGGCGAGAGAGAGTT-GGGAAGGGCGCTTTCTCAATGCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45335564 302 +  49145316 caagattgaaccactgcactccagcctgggcgacagagtgagactttc-------------------------------------aaaaaaaaaaaTTGTGTTTGATTATGCTTAATTTAAAAAAAGGTGAGACCTTCCTTTCG---CTGAGTCTGGTAGAAATCGGTGTTATAGGatagctaacattcactgagaatttactgcaagccagttactgttttaagtgttggatgtgtgttacccactgaatcctacaacaattctatgaagtaggttttatcagtgcgtccatattaccgtcaaggcaagagagagttggggaagggcactttccgaatgct
i calJac3.chr22             I 1953 I 5
e canFam3.chr1               19570094 1432 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=427330.000000
s hg38.chr19_GL949751v2_alt     68925 310 +   1002683 GCTACcgtgtccagagttggttccttcctgtgggtttgtggtctcgctgactttaagaatggagccagggaccttcgtggtgagtgttacagcgcttaaagatggcacggacctaaagagttagcagcagcaagatttattgtgtagagcaagagaacaaagctcccacagcgtggaagcagactctggtggggtgccgc-gctcgccagcttttattccctta-ttgtccccgcccatgtcctgctgattggtccattttacagagc------------------------gctgattggtccatcttacagagtgctgattggtccattttaca
s panTro4.chr19              59002703 334 +  63644993 GCTACcgtgtccagagttggttccttcctgtgggtttgtggtctcgctgactttaagaatggagccagggaccttcgtggtgagtgttacagcgcttaaagatggcacggacctaaagggttagcagcagcaagatttattgtgtagagcaagagaacacagctcccacagcgtggaagcggactctggtggggtgccgc-gctggccagcgtttattccctta-ttgtccccgcctatgtcctgctgattggtccattttacagagcactgattggtccatcttacagagtgctgattggtccattttacagagtgctgattggtccattttaca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55879467 305 +  60714840 GCTACtgtgtgcggagttggttccttcctgtgggtttgtggtctcgctgactttaagaatggagccagggaccttcgtg----gtgttacagcacttaaagatggcacggacctaaagagtttgcagcagcaagatttattgtgtagagcaagagaacaaagcttccacagcgtggaagggaactctggtgcggtgccgc-gctggctagcttttatt-cctta-ttctccccatccatgtcctgctgattggtccattttacagagc------------------------gctgattggtccatcttacagagtgcagattggtccattttaca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102639533 310 - 106955855 gctactgtatctggagttggttccttcctgtgggtttgaggtctcgctgactttaagaatggagccacggaccttcgtggtgagtgttacagcacttaaagatagcacacacctaaagagttggcagcagcaagatttattgtgtagagcaagagaacaaagcttccacagtgtggaagaggactctagcagggtgccgc-gccggctagcttttattccctta-ttgtccccgcccatatcctgctgattggtccattttacagagc------------------------gctgattggcccatcttacagagtactgattggtccattttaca
i nomLeu3.chr10             C 0 I 1535
s rheMac3.chr19              59925923 263 +  64156825 GCCACcgcgtccggagttggttccttccagtgggtttgtggtctagctgacttcaagaatgcagccccagaccttcgcggtgagtgtcacagctcttaaagatggcatggaccc-aagagtgagcagcagcaaaatttattgtgaagagcaagagaacacagcttccacagcctggaaggggacccgagcagggtgccaatgctggctagcttttattcccttatttgtccccgcccatgtcct------------------------------------------------gctgattggtccattttaca------------------------
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061388 287 +  51301725 GCCACCGCCTCgggagttggttccttccagtgggtttgtggtctggctgacttcaagaatgcagccgcagaccttcgcggtgagtgtcacagctcttaaagatggcatggaccc-aagagtgagcagcagcaaaatttattgtgaagagcaagaGAACACAGCTTCCACAGcctggaaggggacccaagcaggttgccgctgctggctagtttttattcccttatttgtccccgcccatgtcctgctgattggtccactttacagagc------------------------gctgattggtccattttaca------------------------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772213 287 +  50890351 GCCACcgcgtccggagttggtt-cttccagtgggtttgtggtccggctgccttcaagaatgcagccgcagaccttcgcggtgagtgtcacagctcttaaagatggcatggacccaaagagtgagcagcagcaaaatttattgtgaagagcaagagaacacagcttccacagactggaaggggacccaagcaggttgccgctgctggctagtttttattcccttatttgtccccgcccatgtcctgctgactggtccactttacagagc------------------------gctgattggtccattttaca------------------------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19570094 1432 - 122678785 I
e calJac3.chr22              45335866   5 +  49145316 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=158443.000000
s hg38.chr19_GL949751v2_alt     69235 92 +   1002683 atcctcttgtaagacagaaaagttctccaggtccccattcaacccaggaagtccagctggcttcacgtctcaCTACTACCTTTCTGTAGCTG
s panTro4.chr19              59003037 92 +  63644993 atcctcttgtaagacagaaaagttctccaggtccccattcaacccaggaagtccagctggcttcacgtctcaCTACTACCTTTCTGTAGCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55879772 92 +  60714840 atcctcttgtaagacagaaaagttctccaagtccccattcaacccagaaagtccagctggcttgacgtctcaCTACTACCTTTCTGTAGCTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102641378 88 - 106955855 atcctcttgta----agaaaagttctccaagtccccattcaacccaggaagtccagctggcttcacctctcaCTACTACCTTTCTGTAGCTG
i nomLeu3.chr10             I 1535 C 0
s rheMac3.chr19              59926186 92 +  64156825 atcctcttgtaagacagaaaagttctccaagcctccactcgatccaggaggtccagctggcttcccctctcaCTGCTACCTCTCTGTAGCTG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061675 92 +  51301725 atcctcttgtaagacagaaaagttctccaagctTCCACTCGACCCAGGAGGTCCAGCTGGCTTCCCCTCTCACTGCTACCTCTCTGTAGCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772500 92 +  50890351 atcctcttgtaagacagaaaagttctccaagcctccactcgacccaggaggtccagctggcttcccctctcaCTGCTACCTCTCTGTAGCTG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19570094 1432 - 122678785 I
e calJac3.chr22              45335866  5 +  49145316 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=21685.000000
s hg38.chr19_GL949751v2_alt     69327 13 +   1002683 CTACTACT---acagt
s panTro4.chr19              59003129 13 +  63644993 CTACTACT---acagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55879864 13 +  60714840 CTACTATT---acagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102641466 13 - 106955855 CTACTACT---acagt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926278 16 +  64156825 CTACTACTACcacagt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061767 16 +  51301725 CTACTACTACCACAGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772592 16 +  50890351 CTACTACTACcacagt
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19571526 13 - 122678785 ctaatatc---ccagc
i canFam3.chr1              I 1432 C 0
e calJac3.chr22              45335866  5 +  49145316 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=300960.000000
s hg38.chr19_GL949751v2_alt     69340 123 +   1002683 gagtagacggcagtgctgggattcgaaccctctgtcttctggcttggaagtcttaaccactaATCGCGTCTTCCTTTCAGCTACTCCTTGGGAAAGGCCTGGAAAGAAGCTACAGCACAGGGC
s panTro4.chr19              59003142 123 +  63644993 gagtagacggcagtgctgggattcgaaccctctgtcttctggcttggaagtcttaaccactGATCGCGTCTTCCTCTCAGCTACTCCTTGGGAAAGGCCTGGAAAGAAGCTACAGCACAGGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55879877 123 +  60714840 gagtggacggcagtgctgggattcgaaccctctgtcttctggcttggacgtcttaaccactGATCGCGTCTTCCACTCAGCTACTCCTTGGGAAAGGCCTGCAAAGAAGCTACAGCACAGGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102641479 123 - 106955855 gagtagacggcagtgctgggattcgaaccctctgtcttctggcttggaagtcttaaccactGATCACGTCTTCCACTTGGCTACTCCCTGGGAAACGCCTGGAAAGAAGCTACAGCACAGAGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926294 123 +  64156825 gagtagacggcagcactgggattcgaaccctctgtcttctggcttggaagtcttaaccactGATCGCGTCTTCCACTCAGCTACTCGTTGGGAAAGGCCCGGAAAGAAGCCACAGCACAGGGC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061783 123 +  51301725 GAGTAGACGGCAGCGCTGGGATTCAAACCCTCTGTCTTCTGGCTTGGAAGTCTTAACCGCTGATTGCGTCTTCCACTCAGCTACTCCTTGGGAAAGACCCGGAAAGAAGCCACAGCACAGGGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772608 123 +  50890351 gagtagacggcagcgctgggattcgaaccctctgtcttctggcttggaaatcttaaccactGATGGCGTCTTCCACTCAGCTACTCCTTGGGAAAGGCCCGGAAAGAAGCCACAGCACAGGGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45335871 105 +  49145316 gagtagatggcag-gctgggattcgaaccc-cagtctcctggctcggaagccttaaccac----------------tcagctGCTCCTTGGGAAAGGCCCAGAGAGAAGCCACAGTGCAGGGC
i calJac3.chr22             I 5 I 348
s canFam3.chr1               19571539 120 - 122678785 gagtgagcagcagcactgggactcaaaccc-aggcCTCGTGACTAGGAAGACACAACCATAGATAGAGCCTTCCACTGATCTACTAG--AGGAATGACCCAGAAGGGAGCTAGAGAACACAGT
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282   1 +  59248254 I

a score=47980.000000
s hg38.chr19_GL949751v2_alt     69463 33 +   1002683 ACAGCGGGGTCTA--AGGACCGTTCCGCGGAGCTC
s panTro4.chr19              59003265 33 +  63644993 ACAGGGGGTTCTA--AGGACCGTTCTGCGGGGCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880000 33 +  60714840 ACAGGGGGGTCTA--AGGACCGTTCCGCGGGGCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102641602 33 - 106955855 ACAGGGGGGTCTA--AGGACCGTTCCACGGGGCTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926417 33 +  64156825 ACAGGGGTGTCGA--AGGGCAGTTCCTCGGGGCTC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061906 33 +  51301725 ACAGGGGTGTCAA--AGGGCAGTTCCTCGGGGCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772731 33 +  50890351 ACAGGGGTGTCGA--AGGGCAGTTCCTCGGGGCTC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19571659 32 - 122678785 ---AGGAAGTTTATTGTGACTCAGAAGCTGAGCTC
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45335976 348 +  49145316 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=44443.000000
s hg38.chr19_GL949751v2_alt     69496 19 +   1002683 AGCCAGCAGGACTGTGGGG
s panTro4.chr19              59003298 19 +  63644993 AGCCAGCAGGACTGCGGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880033 19 +  60714840 AGCCATCAGGACTGCGGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102641635 19 - 106955855 GGCCAGCAGGACTGTGGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926450 19 +  64156825 AGCCAGCAGGGCTGCGGGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061939 19 +  51301725 AGCCAGCAGGGCTGTCGGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772764 19 +  50890351 AGCCAGCAGGGCTGCGGGG
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3610685 19 + 145441459 AGTCTGGAGGCCTAGAGTG
i mm10.chr7                 N 0 C 0
s canFam3.chr1               19571691 19 - 122678785 AGCCAGGAGGACTGAGGGG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45335976 348 +  49145316 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=1002574.000000
s hg38.chr19_GL949751v2_alt     69515 355 +   1002683 CTGCAGGAAAGGACAGTCCA-GCCCAGGGTCCCAGCTTCTCCGCCACTCAGGTTGGAAG---TCTCGGGC---------------TGCAGTGCTCCTGGGGCTCAGGGGCGGATACCAGCAGGAGCGCGGTTCTGACTGCGCCAGTCAAAAGTGACCAGCGCGCCCAGGGAGATGAGGACCAGCCCGGCCAGCCCCAGGCGGACTAGGTTCCCCCGGGTGTAGTCGGAGGAGCCAGAGTCTGCGGGCGGAGCCGGGAGAGAGGGGCCATCAGCTCCCGGACCCCAAAGTCTGGGCCCTGAACTCCAGGTTTCCAGCCCCTGGGGTGGACTTAGGGACCTGACTCTACAGTCTCAAAGTtgagggggagtcgatg
s panTro4.chr19              59003317 355 +  63644993 CTGTGGGAAAGGACAGTCCA-GCCCAGGGTCCCAGCTTCTCCGCCACTCAGGTTGGAAG---TCTCGGGC---------------TGCAGTACTCCTGGGGCTCAGGGGCGGATACCAGCAGGAGCGCGGTTCTGACTGCGCCAGTCAAAAGTGACCAGCGCGCCCAGGGAGATGAGGACCAGCCCGGCCAGCCCCAGGCGGACTAGGTTCCCCCGGGTGTAGTCGGAGGAGCCAGAGTCTGCGGGCGGAGCCGGGAGAGAGGGGCCGTCAGCTCCCGGACCCCAAAGTCTGGGCCCTGAACTCCAGGTTTCCAGCCCCTGGGGTGGACTTAGGGACCTGACTCCACAGCCTCAAAGTtgagggggagtcgatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880052 355 +  60714840 CTGCAGGAAAGGACAGTCCA-GCCCAGGGTCCCAGCTTCTCCGCTACTCAGGTTGGAAG---TCTCGGGT---------------TGCAGTGCTCCTGGGGCTCAGGGGCGGATACCAGCAGGAGCGCCGTTCTGGCTGCGCCAGTCAAAAGTGACCAGCGCGCCCAGGGAGATGAGGACCAGACCGGCCAGCCCCAGGCGGACAAGGTTTCCCCGGGTGTAGTCGGAGGAGCCAGGGTCTGCGGGCGGAGCTGGGAGAGAGGGGCCGTCAGCTCCCGGACCCCAAAGTCTGGGCCCTGAACTCCAGGTTTCCAGCCCCTGGGGTGGACTTAGGGACCTGACTCCACAGTCTCAAAGTtgagagggagtcgatg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102641654 355 - 106955855 CTGCAGAAAAGGACAGTCCA-GCCCAGGGTCTCAGCTTCTCCGCCACTCAGGTTGGAAG---TCTCGGGT---------------TGCAGTGTTCCTGGGGCTCAGGGGCGGATACCAGCAGGAGCACGGTTCTGGCTGCGCCAGTCAAAAGTGACCAGCGCACCCAGGGACATGAGAACCAGACCGGCCAGCCCCAGGCGGACAAGGTTCCCCTGGGTGTAGTCGGAGGAGCCAGAGTCTGTGGGCGGAGCCGGAAGAGAGAGGCCATCAGCTCCCGGACCTCAAAGTCTGGGCCCTGAACTCCAGGTTTCCAGCCCCTGGGGTggacttagggacctgactccacagtctcaaagttgagggggagtcgatg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926469 357 +  64156825 CTGCAGGAAAGGACAATCCA-GCCCAGGGTCCCAGCCTCTCCATCACTCAGGTTGGAAGTCTTCTCGCGT---------------TGCAGTGCCCCTGGGGCTCAAGGGCGGACACCAGCAGGAGCACGGCTCTGGCTGCGCCAGTCAAAAGTGACCAGTGCGCCCAGGGAGATGAGGACCAGACCGGCCAGCCCCAGGCGGACAAGGTTCCCCCGAGTGTAGTCGGAGGAGCTAGAGTCTGCGGGCGGGGCCGGGAGAGACGGGTCGTCAGCTCCCGGATTCCGAAGTCTGGGCCCTGAACTCCAGGTTTCCAG-CCCTGGGGTggacttggggacctgactcctcagtctcaaagttgagggggagtcgatg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47061958 356 +  51301725 CTGCAGGAAAGGAC-GTCCA-GCCCGGGGTCCCAGCCTCTCCATCACTCAGGTTGGAAGTCTTCTCGCGT---------------TGCAGTGCCCCTGGGGCTCAAGGGCGGACACCAGCAGGAGCGCGGCTCTGGCTGCGCCAGTCAAAAGTGACCAGTGCGCCCAGGGAGATGAGGACCAGACCGGCCAGCCCCAGGCGGACAAGGTTCCCCCGAGTGTAGTCGGAGGAGCTAGAGTCTGCGGGCGGAGCCGGGAGAGACGGGCCGTCAGCTCCCGGACCCCAAAGTCTGGGCCCTGAACTCCAGGTTTCCAG-CCCTGGGGTGGACTTGGGGACCTGACTCCTCAGTCTCAAAGTTGAGGGGGAGTCGATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46772783 357 +  50890351 CTGCAGGAAAGGACAGTCCA-GCCCAGGGTCCCAGCTTCTCCATCACTCAGGTTGGAAGTCTTCTCGCGT---------------TGCAGTGCCCCTGGGGCTCAAGGGCGGACACCAGCAGGAGCGCGGTTCTGGCTGCGCCAGTCAAAAGTGACCAGTGCGCCCAGGGAGATGAGGACCAGACCGGCCAGCCCCAGGCGGACAAGATTCCCCCGAGTGTAGTCGGAGGAGCTAGAGTCTGCGGGCAGAGCCGGGAGAGGCGGGCCGTCAGCTCCCGGACCCCGAAGTCTGGGACCTGAACTCCAGGTTTCCAG-CCCTGGGGTggacttggggacctgactcctcagtctcaaagttgagggggagtcgatg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45336324 356 +  49145316 CCACAGGAAAGGACAGTCCA-GCCCAGGGTCCCAGCTTCTCTGCCACTCAGGTTGGAAGTCTTCTGGGGT---------------TGCAGCGCCCCTGGGGCTCAGGGGCGGACGCCAGCAGGAGCGTGGTTCTGGCTGCGACAGTCAAAAGCGACCAGCGCGCCCAGGGAGATGAGGACCAGACTGGCCAGTCCCAGGCGGACCAGGTTCTCCCTGGTGTAGTCGGAGGAGCTGGAGTCTGCGGGCCGAGCCGGGAGAGAGGGGCTGTCATCGCTTGGACCCAGAAGTCTAGGCCCTGAACTCCAGGTCTCCTGTCCCTggggtggacttaggggcctgactccccagtctgaaagttgaggggagtt--atg
i calJac3.chr22             I 348 C 0
s mm10.chr7                   3610704 318 + 145441459 -TTTCAGAGGGGCTGGTC---ACCAAGGATCCCAGCTTCTCTGTCCATC-TCCAGGCAG---TCTC-------------------TTCAGTTTTGCTGGGGC-------AGGAGACCATCAAAGGCAGAGCTCCTGCTGTGCCAATCACAAGTAACTATGATGCCCAAGCAGATGAGGACCATTCCTGCCAGCCCCAAACGGATGAGGTTTCCCTGGGTATAGTCCAAGGAGCCAGAACCTGCGAGCCAAAACGAGGGAGACAGGGTGTTGGTTC-TGTATCCCAGAGTCTTGTTGCTT--TTCTGTGTTTCTGA-CACACAGATGGAGTT-----------------GTCTCTAAGTTTA-ATGGAGTTGATG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19571710 364 - 122678785 CTCTTGAAAGGGCCTGTCCACCCCCAGGAAACCTATTTCTTCTCCCCATCTCTGGGAAGTCTTCTCACACTTGGAGGCATCTGTATCCAGT-CCTCTGGGGCTCAGGGCCTGACGCT-GCCTGGGTGCGACTCTGGCTGTGCCAGTCAAAAACAACCAGTGTGCCCAGGGAGATGAGGACCAGGCCAGCCAACCCCAGGCGGACGAGGTTGCTCTGAGTGTAGTCCAAGGAGCCTGAGCCTGTGGG----ACAGCAAGAGAGAGGCCTTCAGCTC-CAGAACCCAGAGTCTGGG-CCTGCCATCTGGGTCTTGAACCTACAGGGTGATACTGGGGACACAGCTCC-CAGTCTCAAAGTTGAGATGG-GTCAGTG
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282   1 +  59248254 I

a score=53918.000000
s hg38.chr19_GL949751v2_alt     69870 21 +   1002683 -------gaggcttcaactcctgggtcc
s panTro4.chr19              59003672 21 +  63644993 -------gaggcttcaactcctgggtcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880407 21 +  60714840 -------gaggcttcaactcctgggtcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102642009 21 - 106955855 -------gaggcttcaactcctgggtcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926826 21 +  64156825 -------gaggtttcaactcctgggtct
i rheMac3.chr19             C 0 I 1
s papAnu2.chr19              47062314 21 +  51301725 -------GAGGTTTCAACTCCTGGGTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46773140 21 +  50890351 -------gaggtttcaactcctgggacc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45336680 21 +  49145316 -------gaggcttcacttcgtgggtct
i calJac3.chr22             C 0 I 293
s canFam3.chr1               19572074 28 - 122678785 GGAGCAGGGGTCCTGGACTCCTGGGTCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611022  0 + 145441459 C
e macFas5.chr19              54942282  1 +  59248254 I

a score=77170.000000
s hg38.chr19_GL949751v2_alt     69891 31 +   1002683 aggaagaaggggct-ggggcctggactgctgg
s panTro4.chr19              59003693 31 +  63644993 aggaagaaggggct-ggggcctggactcctgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880428 31 +  60714840 aggaagaaggggct-ggggcctggactcctgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102642030 31 - 106955855 aggaagaaggggct-ggggcctgcactcctgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59926848 31 +  64156825 agggaggagggtct-ggggcctggactcccgg
i rheMac3.chr19             I 1 I 2
s papAnu2.chr19              47062335 32 +  51301725 AGGAAGGAGggactgggggcctggactcctgg
i papAnu2.chr19             C 0 M 1323
s chlSab2.chr6               46773161 32 +  50890351 aggaaggagggactgggggcctggattcctgg
i chlSab2.chr6              C 0 I 2
s calJac3.chr22              45336994 31 +  49145316 agggaggagggact-ggggcctggactcctgg
i calJac3.chr22             I 293 I 2
s canFam3.chr1               19572102 30 - 122678785 -GGGAGAAGGGGGT-AGAGTCATGACCCCTAG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611022  0 + 145441459 C
e macFas5.chr19              54942282  1 +  59248254 I

a score=5254.000000
s hg38.chr19_GL949751v2_alt     69922 9 +   1002683 atcaggaag
s panTro4.chr19              59003724 2 +  63644993 at-------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880459 9 +  60714840 atcaggaag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102642061 9 - 106955855 atcaggaag
i nomLeu3.chr10             C 0 M 1589
s rheMac3.chr19              59926881 9 +  64156825 ctgagggag
i rheMac3.chr19             I 2 C 0
s chlSab2.chr6               46773195 9 +  50890351 ctgagggag
i chlSab2.chr6              I 2 C 0
s calJac3.chr22              45337027 9 +  49145316 ccgagggag
i calJac3.chr22             I 2 C 0
s canFam3.chr1               19572132 9 - 122678785 ACTGGGGAG
i canFam3.chr1              C 0 I 4
e mm10.chr7                   3611022 0 + 145441459 C
e papAnu2.chr19              47062367 1323 +  51301725 M
e macFas5.chr19              54942282 1 +  59248254 I

a score=29011.000000
s hg38.chr19_GL949751v2_alt     69931 29 +   1002683 gaggggctgggggcctggagtcctgggtc
s ponAbe2.chr19              55880468 29 +  60714840 gaggggctgggggcatggagtcctgggtc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59926890 29 +  64156825 gaggggctgggggtctggactcccgggtc
i rheMac3.chr19             C 0 M 1236
s chlSab2.chr6               46773204 29 +  50890351 gaggggccgggggcctggactcctgggtc
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45337036 28 +  49145316 gagggact-ggggcctggactcctgggtc
i calJac3.chr22             C 0 I 1
s canFam3.chr1               19572145 29 - 122678785 GAGGAATCAGGGGCCTGGATCCTTGGGCT
i canFam3.chr1              I 4 C 0
e mm10.chr7                   3611022  0 + 145441459 C
e nomLeu3.chr10             102642070 1589 - 106955855 M
e papAnu2.chr19              47062367 1323 +  51301725 M
e macFas5.chr19              54942282  1 +  59248254 I
e panTro4.chr19              59003726  0 +  63644993 C

a score=49811.000000
s hg38.chr19_GL949751v2_alt     69960 65 +   1002683 ---caggaaggaggggctgggggcctggagtcctgggtctgaggg--aggaggtactggggcccgggaat
s panTro4.chr19              59003726 65 +  63644993 ---caggaaggaggggctgggggcctggagtcctgcgtctgaggg--aggaggggctgggtcccaggaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880497 65 +  60714840 ---caggaaggagggactggcggcctggagtcctgggtctgaggg--aggaggtattggggcccgggaat
i ponAbe2.chr19             C 0 I 221
s chlSab2.chr6               46773234 65 +  50890351 ---gagggaggagggaccgggggcctggactcctgggtctgaggg--aggaggggccgggggcctggact
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45337065 63 +  49145316 ---gagggaggaggg--ctggggcctggactcctgggtccgaggg--aggagggactggggtcctggact
i calJac3.chr22             I 1 C 0
s canFam3.chr1               19572174 68 - 122678785 GGGGAGCAGGGAGAGGCTGGGAACCCAGACACCTGGGATAGGGAGCAGGGAGGAACCAGGTCTCAGAC--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611022  0 + 145441459 C
e nomLeu3.chr10             102642070 1589 - 106955855 M
e papAnu2.chr19              47062367 1323 +  51301725 M
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59926919 1236 +  64156825 M

a score=24438.000000
s hg38.chr19_GL949751v2_alt     70025  64 +   1002683 -cctgggtct------------------------------------------------gagggaggaggagctggaggactagactcctggatctga-ggg---------aggaggggctggg-
s panTro4.chr19              59003791  48 +  63644993 -cctgggtct------------------------------------------------gagggaggaggggctgcaggactagacccctgggtctga---------------------------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880783  64 +  60714840 -cctgggtct------------------------------------------------gagggaggaggggctggaggactagacccctgggtctga-ggg---------aggaggggctgga-
i ponAbe2.chr19             I 221 C 0
s chlSab2.chr6               46773299 113 +  50890351 -cctgggtctgagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggtcgtggagggaggaggggccgggggtctgggctcctgggtctggaggg---------aggaggggccggg-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45337128  60 +  49145316 -gctgggtct------------------------------------------------gagggaggagg-gctgg-ggcctggactgctgggtccga-ggg---------aggagga--ctgg-
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19572242  77 - 122678785 CCCAGGGTTGGG----------------------------------------------GAGCAGGGAGGAACCCGAGGCCTGGATCCCCTGGCTGGG-GAGTAGGGGCCAAGGTGGGGGCTGGA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611022   0 + 145441459 C
e nomLeu3.chr10             102642070 1589 - 106955855 M
e papAnu2.chr19              47062367 1323 +  51301725 M
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59926919 1236 +  64156825 M

a score=13869.000000
s hg38.chr19_GL949751v2_alt     70089 72 +   1002683 tcccaggaatcctgggtctgaggg-aggaggggctgcagga----ctagacccctgggtctgaaggaggagaggctg
s panTro4.chr19              59003839 14 +  63644993 ---------------------------------------------------------------aggaggagaggctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880847 72 +  60714840 ggactagacccctgggtctgaggg-aggaggggctgcggga----ctagacccctgagtctgaaggaggagaggctg
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               46773412 73 +  50890351 ggcctggactcctgggtctggggg-aggaggggctggggggc---ctgggctcctgggtctgggggaggaggggctg
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45337188 69 +  49145316 ggcctggactgctgggtccgaggg-aggagggct---gaggc---ctggactcctgggtctgagggaggag-ggctg
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3611022 32 + 145441459 -----------------------------------------TCCCCTGGTCGCCTGGGTCTGAAGGAGGAGAG----
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19572319 55 - 122678785 --------TCCCTGGGCTGGGGAGTAGGGAGGAACAGGGGGC---CCGGACTCCTG-----------GCAGGGGCTG
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102642070 1589 - 106955855 M
e papAnu2.chr19              47062367 1323 +  51301725 M
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59926919 1236 +  64156825 M

a score=37676.000000
s hg38.chr19_GL949751v2_alt     70161 36 +   1002683 ggggcctgggctcctgggtctgagggcggaggtcct--
s panTro4.chr19              59003853 36 +  63644993 ggggcctgggctcctgggtctgagggcggaggtcct--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880919 36 +  60714840 ggggcctgggctcctgggtctgagggaggagggcct--
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47063702 35 +  51301725 GGGACCTGGGCTCCT-GGTCTgagagaggaggggct--
i papAnu2.chr19             M 1323 C 0
s chlSab2.chr6               46773486 36 +  50890351 ggggcctgggctcctgggtctgggggaggaggggct--
i chlSab2.chr6              I 1 I 1
s calJac3.chr22              45337257 34 +  49145316 -gggcctggactcctgggtccgagggaggaggact---
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3611054 11 + 145441459 ----CCAGAGCTTCT-----------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19572374 38 - 122678785 GGGGCCCGGACCCCTAGATTGGGGAGCAGGGAGGCACC
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102642070 1589 - 106955855 M
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59926919 1236 +  64156825 M

a score=53795.000000
s hg38.chr19_GL949751v2_alt     70197 40 +   1002683 ggggcctgcattcct-------ggggc----ggaggaggcgggCCGGGCCT
s panTro4.chr19              59003889 40 +  63644993 ggggcctgcattcct-------ggggc----ggaggaggcgggCCGGGCCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880955 40 +  60714840 ggggcctgcattcct-------ggggc----ggaggaggcgggccgggCCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102643660 40 - 106955855 GGGGCCTGCATTCCT-------GGGGC----GGAGGAGGCGGGCCGGGCCT
i nomLeu3.chr10             M 1589 C 0
s papAnu2.chr19              47063737 39 +  51301725 gggaccTGTATTCCT-------GGGGC----TGGGGAGACGGGCCGGCGG-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46773523 39 +  50890351 ggggcctgcgttcct-------ggggc----tggggagacgggccggcgg-
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45337291 39 +  49145316 ggggcctggactcct-------gggtccgagggaggcggCGGGCCG-----
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19572412 46 - 122678785 GGAGGCCGGACTCCCCCGCCAGGGAGC----AGGGGCTGCGGCCGGGCGC-
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611065  0 + 145441459 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59926919 1236 +  64156825 M

a score=1080960.000000
s hg38.chr19_GL949751v2_alt     70237 350 +   1002683 CAGGGCCCTCACCTTCCCAGCTGATGACCAGCACCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGATAGTAGCAGCTGTAGGTGCCGGGGGCGCGGGCGCCCAGCAGCGTGAAGTCGGCCCAGGGCTGCGCGGAGTGGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCACGAAGCTCATGTTCCGCAGGCGGCCCGCGCAGCGCAGGCTCACGTTGGCGCCAGGACCCACCACCGGCCCGGGCAGCGCCACCAGCGACGGCCGCGGCAGCTCCTCTGC--AGAGACGGGGTGAGAGTCCGGGGCCGCGTGAGC---GTCTTCC---Gctcgctcgctc
s panTro4.chr19              59003929 346 +  63644993 CAGGGCCCTCACCTTCCCAGCTGATGACCAGCACCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGATAGTAGCAGCTGTAGGTGCCTGGGGCGCGGGCGCCCAGCAGCGTGAAGTCGGCCCAGGGCTGTGCGGAGTGGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCGCGAAGCTCATGTTCCGCAGGCGGCCCGCGCAGCGCAGGCTCACGTTGGCGCCAGGAGCCACCACCGGCCCGGGCAGCGCCACCAGCGACGGCCGCGGCAGCTCCTCTGC--AGAGACGGGGTGAGAGTCCGGGGCCGCGTGAGC---Gtcttc-------cgctcgctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55880995 350 +  60714840 CAGGGCCCTCACCTTCCCGGCTGATGACCAGCACCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGGTAGTAGCAGCTGTAGGTGCCCGGGGCGCCGGCGCCCAGCAGCGGGAAGTCGGCCCAGGGCTGCGCGGAGTCGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCACGAAGCTCATGTTCCGCAGGCGGCCCGCGCAGCGCAGGCTCACGTTGGCGCCAGGAGCCACCACCGGCCCGGGCAGAGCCACCAGCGACGGCCGCGGCAGCTCCTCTGC--AGAGACGGGGTGAGAGTCCCGGGCCGCGTGAGC---GTCTTTC---GCTCGCTCGCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102643700 345 - 106955855 TAGGGCCCTCA-CTTCCCAGCTGATGACCAGCACCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGATAGTAGCAGCTGTAGGTGCCCGGGGCGCGGGCGCCCAGCAGCGGGAAGTCGGCCCAGGGCTGCGCGGAGTCGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCACGAAGCTCATGTTCCGCAGGCGGCCCGCGCAGCGCAGGCTCAAGTTGGCGCCAGGAGCCACCACCGGCCCGGGCAGCGCCACCAGCGACGGCCGCGGCAGCTTCTCTGC--GGAGACGGGGTGAGGGTCCGGGGCCGCGTGAGC---GTCTTC-------CGctcgctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59928179 316 +  64156825 CAGGACCCTCACCTTCCCAGCTGATGACCAGCGCCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGGTAGTAGCAGCTGTAGGTGCCGGGAGCG----------------------------------GCGCGGAGTCGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCACGAAGCTCATGTTCCGCAGGCGGCCGGCGCAGCGCAGGCTTACGTTGGCGCCGGGAGCCACCACCGGCCCGGGCAGCGCCACCAGCGACGGCCGCGGCAGCTGCTCTGC--GGAGACCGGGTGAGAGTCGGGGGCCGCGTGAGC---GCCTTCC---GCTGGctcgctc
i rheMac3.chr19             M 1236 I 2447
s papAnu2.chr19              47063776 350 +  51301725 CAGGACCCTCACCTTCCCAGCTGATGACCAGCGCCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGGTAGTAGCAGCTGTAGGTGCCGGGAGCGCGGGCGCCCAGCAGCGGGAAGTCAGCCCAGGGCTGCGCGGAGTCGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCACGAAGCTCATGTTCCGCAGGCGGCCGGCGCAGCGCAGGCTTACGTTGGCTCCGGGAGCCACCACCGGCCCGGGCAGCGCCACCAGCGACGGCCGCGGCAGCTGCTCTGC--GGAGACCGGGTGAGAGTCGGGGGCCGCGTGAGC---GCCTTCA---GCTcactcgctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46773562 350 +  50890351 CAGGGCCCTCACCTTCCCAGCTGATGACCAGCGCCTCGCTGCGCTGCGACAGCACGTAGGGCGCGGAGGGCGTGTGGTAGTAGCAGCTGTAGGTGCCGGGAGCGCGGGCGCCCAGCAGCGGGAAGTCAGCCCAGGGCTGCGCGGAGTCGCGGTACTGCAGCGGGGCCGCCACGCCCTCGCGGTACAGCACGAAGCTCATGTTCCGCAGGCGGCCGGCGCAGCGCAGGCTTACGTTGGCGCCGGGAGCCACCACCGGCCCAGGCAGCGCCACCAGTGAGGGCCGCGGCAGCTGCTCTGC--GGAGACGGGGTGAGAGTGGGGGGCCGCGTGAGC---GCCTTCC---GCTCTCTCGCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45337330 344 +  49145316 CAGGG-CCTCACCTTCGGAGCGGACGGCCAGCACCGGGCTGCGCGGGGACAGCACGTAGGGCGCGGAGGGCGTGTGGTAGTAGCAGCTGTAGGTGCCGGGGGCGCGGACGCCCAGCAGCGGGAAGTCGGCCCAGGGCTGCGCGGAGTCGCGATACTGCAGCGGGGCCGCCACGCCCACGCGGTACAGCACGAAGCTCATGTTCCGCAGGCCGCCCGCGCAGCGCAGGGTCACACGGCCGCCGGGGGCCACCACCGACCCGGGCAGCGCCACCAGCGACGGGCGCGGCAGCTCCTCTGC--GGGCGGGAGGCGGGAGGC--GGACCGCGTGGGC---GCCTTTCCAGGAGCGC------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3611065 339 + 145441459 ---------TACCTTCGAAACTGATGACCAGTGGCTGGCTGCGCTGTGATAGCACATAGGGGGCAGAAGGCGTGTGGTAATAGCAACAGTAGGTGCCAGGTGTGTGTGTGCCGATCAAAAGGAAGTCAGCCCAGGGCTGCACAGAGTCAATATACTGCAGAGGGGTTGCCACGCCTACGCGGTACAGTGCAAAACTCATGCCCGGTATGCGGCCTGCACAGCGCAGGCTTACGTTGGCTCCCGGGGCCACCACAGGCCCAGGCAGTGCCACCAGTGATGGTCTGGGGAGCTGATCTGT--GGAACACAGGCAAG-GTCTTAGATAGGCTATCT---GTCCTG----AATGGtcctctc
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19572458 343 - 122678785 -CGGGCCCTTACCGTCAGCGCTGATGACCAGCGGCTCGCTGCGCAGCGACAGCACGTACGGGGAGGACGGCGTGTGGTAGTAGCAGCTGTAGGTGCCCGGCGCGCGGGCTCCGGGCAGCGGGAAGTCGGCCCAGGGCTCCGCCGAGTCGCGGTACTGCAGCGGCGCCGCCACCCCCACGCGGTACAGCGCGAAGCTCATGCCCCGCAGGCGGCCGGCGCAGCGCAGGCTCACGTTGGCATCGGGCGCCACCACCGGCCCGGGCAGCGCCACGAGCGACGGGCGCGGCAGCTGGTCTGCGAGGGGCACGGGCGGGGGCGAGCGCTGGCGCGGGCCTGGCccccc---g-----------
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282   1 +  59248254 I

a score=57000.000000
s hg38.chr19_GL949751v2_alt     70587 104 +   1002683 gctctgtttctccttct-cctctgtctctcgc------------------------------------------------------------tttctctgtgcc-tctctctctctttctgc----ctctctt---------------tctctctgcctg--tctctctctctgtctgcctctctct
s panTro4.chr19              59004275 104 +  63644993 gctctgtttctctttct-cctctgtctctcgc------------------------------------------------------------tttctctgtgcc-tctctctctctttctgc----ctctctt---------------tctctctgcctg--tctctctctctgtctgcctgtctct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55881345 111 +  60714840 Gctctctttctctttctgcctctgtctctcgc------------------------------------------------------------tttctctctgcc-tctctctctctctctgcctctctctctt---------------tctctctgcctgcctctctctctctctctgcctctctct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644045  97 - 106955855 gctgtctt----------tctctgtctctcgc------------------------------------------------------------tttctctctgcc-tctctctctctttctgt--ctctctctc---------------tctgtctgcctg--tctctctctctgtctgcctgtctct
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47064126 161 +  51301725 ------tctctctttctgcctctgtctctctctctctctgtctttctcttcctctctgcctgtctctctctttctctctgcctgtctctctctttctttctgcc-tctctctttctttctgc--ctgtctctt---------------tctctctgcctg--tctctctttctctctgcctgtctct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46773912  71 +  50890351 ----TCTTTCTCTTTCTGCCTCTGTCTCTCTC-----------------------------------------------------------------------------------------------TCTCTT---------------TCTCTCTGCCTG--TCTCTCTCTCTCTCTGCCTGTCTCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45337674  95 +  49145316 ------------Gctctgcctgtgtctctctt-----------------------------------------------------------ctctctttcctctgtctctctctcgttctgcctctgtctctt---------------tctcgctccc----tctgtctctgtctctgtctctct--
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3611404 101 + 145441459 ------------------cctcctcctccctt------------------------------------------------------------ctcttctgcctc-ccttcccatcccccaaactctctcccctcAGTAAGTTCAGGAATTTCTCAGTGTA--CCTCCCTATC-----GCCTCTCTCC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19572801  46 - 122678785 ----------------------------------------------------------------------------------------------gccctgcgcc-cctc-----------------ctcccgc---------------tccccgaccctg--tgcccc-------cggcctg-----
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=2692.000000
s hg38.chr19_GL949751v2_alt     70691 2 +   1002683 ct
s ponAbe2.chr19              55881456 2 +  60714840 ct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644142 2 - 106955855 tt
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47064287 2 +  51301725 ct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46773983 2 +  50890351 CT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45337769 2 +  49145316 ct
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3611505 2 + 145441459 TT
i mm10.chr7                 C 0 I 1
e canFam3.chr1               19572847 0 - 122678785 C
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I
e panTro4.chr19              59004379 0 +  63644993 C

a score=4280.000000
s hg38.chr19_GL949751v2_alt     70693 19 +   1002683 gcctccctctctctctgcc
s ponAbe2.chr19              55881458 19 +  60714840 ttctctctgcctgcctctc
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47064289 17 +  51301725 --ctttctctctgcctgtc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46773985 15 +  50890351 --C--TCTCTCTGCCTGTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45337771 19 +  49145316 ttctcttttttttttagcc
i calJac3.chr22             C 0 I 893
s mm10.chr7                   3611508 15 + 145441459 TGTTCCTTTTCTACC----
i mm10.chr7                 I 1 I 1
s canFam3.chr1               19572847 19 - 122678785 gcccccttctcccgctgcc
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102644144  0 - 106955855 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I
e panTro4.chr19              59004379  0 +  63644993 C

a score=4446.000000
s hg38.chr19_GL949751v2_alt     70712 15 +   1002683 ----tccctctct--ctgcct
s ponAbe2.chr19              55881477 15 +  60714840 ----tctctctct--ctgcct
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47064306 17 +  51301725 ----tctctctctgcctgtct
i papAnu2.chr19             C 0 I 2765
s chlSab2.chr6               46774000 15 +  50890351 ----TCTCTCTCT--CTGCCT
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3611524 14 + 145441459 ----TCTCCTACC--CTCCT-
i mm10.chr7                 I 1 C 0
s canFam3.chr1               19572866 15 - 122678785 tccgcctcctgct--ct----
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144  0 - 106955855 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I
e panTro4.chr19              59004379  0 +  63644993 C

a score=10439.000000
s hg38.chr19_GL949751v2_alt     70727 35 +   1002683 ccctc----tctctctgcc----tccctctctctctgcctccc
s ponAbe2.chr19              55881492 41 +  60714840 ctctctctttctctctgcctg--tctctctctctctgcctctc
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47067088 39 +  51301725 ctctt----tctctctgcctgtctctctctctctctgcctgtc
i papAnu2.chr19             I 2765 C 0
s chlSab2.chr6               46774015 35 +  50890351 GTCTC----TCTCTCTGCCTG----TCTCTCTCTCTGCCTGTC
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3611538 36 + 145441459 ------TCACCTCACT-CCTGTGCCCTTCTCCCATTTCTTCCC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19572881 35 - 122678785 cgttc----cctctccgcc----gctcaccgacgcccctgccc
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144  0 - 106955855 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I
e panTro4.chr19              59004379  0 +  63644993 C

a score=33036.000000
s hg38.chr19_GL949751v2_alt     70762 117 +   1002683 tc----tctctctgc--------ctccctctctctctgcctccctc----tctctctgcctgcctctctctttgcctgcctctctctctgcctccctct-------------ctctgcctccctctctctctgcctccctctctct
s ponAbe2.chr19              55881533 129 +  60714840 tctctttctctctgcctgcct--ctctctctctctctgcctctctctctttctctctgcctgtctctctctct--ctgcctctctctctttctctctgc-------------ctgcctctctctctctctctgcctctctctcttt
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47067127 129 +  51301725 tctc--tctttctctctgcct--gtctctctctttctgcctgtctctctttctctctgcctgtctctctctctctctgcttgtctctctctctctctct-------------gcctgtctctctctctctctgcctgtctctctct
i papAnu2.chr19             C 0 I 892
s chlSab2.chr6               46774050  89 +  50890351 ------------------------TCTCTCTCTCTCTGCCTGTCTCTCTTTCTCTCTGCCTGTCTCTCTCTCTCTCTGCCTGTCTCTCTCTTTCTCTCT-------------GCCTGTCTCTCTCT--------------------
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19572916 126 - 122678785 ----------------TGCCTCACTCTGCATTTCTCTCCCTCCCTCCCAACATCTCTG--TGTCTCTCGTTATTTCTGCTTTTGTGTCCTTTGCATCCTAGTCGGTGGCGCCCCCTGTATCTTCATCCCCGAGCACACCTTTCT--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574   0 + 145441459 C
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144   0 - 106955855 C
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I
e panTro4.chr19              59004379   0 +  63644993 C

a score=684.000000
s hg38.chr19_GL949751v2_alt     70879 8 +   1002683 ctgcctcc
s ponAbe2.chr19              55881662 8 +  60714840 ctctctgc
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47068148 8 +  51301725 ctgtctct
i papAnu2.chr19             I 892 C 0
s canFam3.chr1               19573042 8 - 122678785 CTTGCAGT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574 0 + 145441459 C
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144 0 - 106955855 C
e chlSab2.chr6               46774139 0 +  50890351 C
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I
e panTro4.chr19              59004379 0 +  63644993 C

a score=6253.000000
s hg38.chr19_GL949751v2_alt     70887 10 +   1002683 ctctctctct
s panTro4.chr19              59004379 10 +  63644993 ctttctctct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55881670 10 +  60714840 ctgtctctct
i ponAbe2.chr19             C 0 I 226
s papAnu2.chr19              47068156 10 +  51301725 ctctttctct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46774139  2 +  50890351 --------CT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19573050 10 - 122678785 CTCTGCCTCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574  0 + 145441459 C
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144  0 - 106955855 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=1205.000000
s hg38.chr19_GL949751v2_alt     70897 2 +   1002683 gc
s panTro4.chr19              59004389 2 +  63644993 gt
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47068166 2 +  51301725 gc
i papAnu2.chr19             C 0 I 22
s chlSab2.chr6               46774141 2 +  50890351 GC
i chlSab2.chr6              C 0 I 4
s canFam3.chr1               19573060 2 - 122678785 GT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574 0 + 145441459 C
e ponAbe2.chr19              55881680 226 +  60714840 I
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144 0 - 106955855 C
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=34435.000000
s hg38.chr19_GL949751v2_alt     70899 58 +   1002683 ctccctctctctctgcctccctc------tctctctgcctgcctctctctctgcctgcctctct
s panTro4.chr19              59004391 58 +  63644993 ctgcctctctctctgcctccctc------tctctctgcctccctctctctctgcctccctctct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55881906 62 +  60714840 ctctctctctctctgcctctctc--tctttctctctgcctgtctctctctctgtctgcctgtct
i ponAbe2.chr19             I 226 C 0
s papAnu2.chr19              47068190 56 +  51301725 ctctctctctctctgcctgtctctctctttctctctgcctgtctctctct--------tactct
i papAnu2.chr19             I 22 C 0
s chlSab2.chr6               46774147 56 +  50890351 CTCTCTTTCTCTCTGCCTGTCTCTCTCTTTCTCTCTGCCTGTCTCTCTCT--------TCCTCT
i chlSab2.chr6              I 4 C 0
s canFam3.chr1               19573062 50 - 122678785 --------GTCCCCGGATGTCCC--CTTGTCTGTCTGCCTGTGGTTCACTGAAA----TTCTCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574  0 + 145441459 C
e calJac3.chr22              45337790 893 +  49145316 I
e nomLeu3.chr10             102644144  0 - 106955855 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=36988.000000
s hg38.chr19_GL949751v2_alt     70957 42 +   1002683 ctctgcctcc-------ctctctttctgcctccctctctctctgcctcc
s panTro4.chr19              59004449 42 +  63644993 ctctgcctcc-------ctctctctctgcctccctctctctctgcctcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55881968 36 +  60714840 ctct-------------ttctctctctgcctccctttctctctgcctcc
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47068246 42 +  51301725 ctctgcctct-------gtctctttctctttgtctctctctctgcctcg
i papAnu2.chr19             C 0 I 6
s chlSab2.chr6               46774203 42 +  50890351 CTCTGCCTCT-------GTCTCTTTCTCTTTGTCTCTCTCTCTGCCTCG
i chlSab2.chr6              C 0 I 6
s calJac3.chr22              45338683 49 +  49145316 ctcagcctcccgagtagctTtctctctctctctctttctctctgcttct
i calJac3.chr22             I 893 C 0
s canFam3.chr1               19573112 42 - 122678785 TTGTACGTCC-------CTGTTTTAATCTCCCCCGCGCTGTGTGTTTCA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574  0 + 145441459 C
e nomLeu3.chr10             102644144  0 - 106955855 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=50583.000000
s hg38.chr19_GL949751v2_alt     70999 45 +   1002683 -----ctctctctc--------tgcctccc------tttctccttctgcctctttctc--tctctc
s panTro4.chr19              59004491 45 +  63644993 -----ctctctctc--------tgcctccc------tttctccttctgcctctttctc--tctctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882004 45 +  60714840 -----ctttctctc--------tgcct--c------tttcttcttctgcctctttctctGTCTCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644144 41 - 106955855 -----ctctctctc--------tgcctccc------tttctccttctgcctctt------tctctc
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47068294 45 +  51301725 -----ctttctgtc--------tgcctctc------tttctccttctgcctctgtctc--tttctc
i papAnu2.chr19             I 6 C 0
s chlSab2.chr6               46774251 45 +  50890351 -----CTTTCTCTC--------TGCCTCTC------TTTCTCCTTCTGCCTCTGTCTC--TTTCTC
i chlSab2.chr6              I 6 C 0
s calJac3.chr22              45338732 33 +  49145316 -----ctctctttc--------c-cccctc------tctctccc-----------ctc--catctc
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19573154 64 - 122678785 CTACCCTGGATCTCCGAGGCAGTGTCTGCCGTATGGTTTCTTCTGGTGCTTCTGGGTT--TCTCCc
i canFam3.chr1              C 0 I 198
e mm10.chr7                   3611574  0 + 145441459 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=41042.000000
s hg38.chr19_GL949751v2_alt     71044 30 +   1002683 tccccccgcactgtacctctctc----tctctct
s panTro4.chr19              59004536 30 +  63644993 tccccccgcactgtacctctctc----tctctct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882049 34 +  60714840 TCCCCCCGCACTGTACctctctctctttctctct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644185 34 - 106955855 tccccccgcactgtacctctctctctttctctct
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47068339 30 +  51301725 tctcccctcactctacctctctc----tctcttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46774296 30 +  50890351 TCTCCCCTCACTCTACCTCTCTC----TCTCTTT
i chlSab2.chr6              C 0 I 17
s calJac3.chr22              45338765 29 +  49145316 cccccccac-ccgtccctccctc----cctctct
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3611574  0 + 145441459 C
e canFam3.chr1               19573218 198 - 122678785 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=2552.000000
s hg38.chr19_GL949751v2_alt     71074 37 +   1002683 gctcccctgtctctctctctctgctcccctgtctctc----
s panTro4.chr19              59004566 21 +  63644993 gctcccctgtctctctctctc--------------------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882083 21 +  60714840 gctcccctgtctctctctctc--------------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644219 15 - 106955855 gctccc------gtctcgctc--------------------
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47068369 15 +  51301725 ------ctgtctgccccaccc--------------------
i papAnu2.chr19             C 0 I 2
s calJac3.chr22              45338794 25 +  49145316 gtccccgcgactccccccgcc----------------ccac
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3611574  0 + 145441459 C
e canFam3.chr1               19573218 198 - 122678785 I
e chlSab2.chr6               46774326 17 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=619.000000
s hg38.chr19_GL949751v2_alt     71111 7 +   1002683 tctctcc
s panTro4.chr19              59004587 1 +  63644993 ------c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882104 1 +  60714840 ------c
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644234 1 - 106955855 ------c
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47068386 6 +  51301725 tctct-c
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               46774343 6 +  50890351 TCTCT-C
i chlSab2.chr6              I 17 C 0
e mm10.chr7                   3611574 0 + 145441459 C
e canFam3.chr1               19573218 198 - 122678785 I
e calJac3.chr22              45338819 0 +  49145316 C
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=20660.000000
s hg38.chr19_GL949751v2_alt     71118 24 +   1002683 ccctagtg--------------tctctgtatctgtctt
s panTro4.chr19              59004588 24 +  63644993 ccctAGtg--------------tctctgtatctgtctt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882105 24 +  60714840 ccctAGTG--------------TCTCTGTATCTGTCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644235 21 - 106955855 ccctagta--------------tctctgtatct---ct
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47068392 24 +  51301725 ccccagta--------------tctctgtgtctttctt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46774349 24 +  50890351 CCCCAGTA--------------TCTCTGTGTCTTTCTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45338819 11 +  49145316 ------------------------actgtatcttt---
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19573416 37 - 122678785 ccctagtaaagaatcaTCCATTTCTCTGGTTCTCTTT-
i canFam3.chr1              I 198 C 0
e mm10.chr7                   3611574  0 + 145441459 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59928495 2447 +  64156825 I

a score=235227.000000
s hg38.chr19_GL949751v2_alt     71142 110 +   1002683 ttcttgtgt-----------ctgtgaatct----gtttgcccgcctcgctctgtctctct-----ttccctatatctctctgtccctcC-CCCAACTCCCTTGTTCCACC-----------CACTTCTCCTC----CCCGACCCCA
s panTro4.chr19              59004612 112 +  63644993 ttcttgtgt-----------ctgtgaatctatcagtttgcccgcctcgctctgtctct-------ttccctatatctctctgtccctCC-CCCAACTCCCTTGTTCCACC-----------CACTTCTCCTC----CCCGACCCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882129  98 +  60714840 TTCTTGTGT-----------CTGTGAATCTATCAGTTTGCCCGCCTCGCTCTGTCTCT---------------------CTGTCCCTCC-CCCACCTCCCTTGTTCCACC-----------CACTTCTCCTC----CCCGACCCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644256 114 - 106955855 gtcttgtgc-----------ctgcgaatctatcagtttgccagcctcgctctgtctctct-----ttccctatatctctctgtccctcC-CCCACCTCCCTTGTTCCACC-----------CACTTCTCCTC----CCCGACCCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59930942 110 +  64156825 TTCTTGTGT-----------CTGTGAATCTGTCAGTTTGCCTGCCTCGCTCTCTCTTT---------ACCTGTATCTCTCTGTCCCTCC-CCCACCTCCCTTGTTCCACC-----------CGCTTCTCCTC----CCTGACCCCA
i rheMac3.chr19             I 2447 C 0
s papAnu2.chr19              47068416 108 +  51301725 --cttgtgt-----------ctgtgaatcTGTCAGTTTGCCCGCCTCGCTCTCTCTTT---------ACCTGTatctctctgtccctcc-cccacctcccttgTTCCACC-----------CGCTTCTCCTC----CCTGACCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46774373 108 +  50890351 --CTTGTGT-----------CTGTGAATCTATCAGTTTGCCTGCCTTGCTCTCTCTTT---------CCCTGTATCTCTCTGTCCCTCC-CCCACCTCCCTTGTTCCACC-----------TGCTTCTCCTC----CCTGACCCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45338830 114 +  49145316 ctctcGTGT-----------CTGTGAAACTATCAGTTTGCTCGCGTCACTCTGTCTCTCT-----TTCCCTGTATCTCTCTGTCCTTCC-CCCGCCTCCCTTGCTCCACC-----------CGCTTCTCCTG----CACAACCCCA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19573453 146 - 122678785 CCCTCATGTAGTAATTTTTGCTCTGGGTCATTGTACAAGCCTGTCTCTGTATGTCTTTTTCCGTATCTCCTGTATCTCTCAGTCCCTCCTTCTCCCTCCCTCATCACACCCCAAAGTCCCTCCTTTCCCCTCAGCGCCCCACCTCA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3611574   0 + 145441459 C
e macFas5.chr19              54942282   1 +  59248254 I

a score=1606428.000000
s hg38.chr19_GL949751v2_alt     71252 481 +   1002683 GGACCTCACCTGTCACCAGCAGCTCCAGGACATCGCTGGGCTGGGACCAGACACCCGGCCCCCAGTCTGGCCTTCGGTAGCAGCAGCGGTAAATTCCCCCTTGGGCTGGAGTCACCTCCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATCCCGGAAGAGAAGGGGAGCGATCTCTCCAGGCTTGAAAAGTCCAAATCTCCAAGCGGGTTGGGGTGCCCGGCATCTCAAGGTCACGTTGACCCCAGGGGTCACAACTGTAGCCGGCTGAGCTCCCAGCCATGGCTTAGGGTGGTATGAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTCCTCGGGCCT------CCTGGGAGCCCCAGAAGATGAAAGGGAAGTTGGGGAAGGAGGAAAATCaccttggacaattactgcccctttcttagcctcagtttcctgtttgt-aaaatcagggagagactggactaCAATCAAGCCTTGTTAA
s panTro4.chr19              59004724 481 +  63644993 GGACCTCACCTGTCACCAGCAGCTCTAGGGCATCGCTGGGCTGGGACCAGACACCCGGCCCCCAGTCTGGCCTTCGGTAGCAGCAGCGGTAACTTCCCCCTTGGGCTGGAGTCACCTCCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATCCCGGAAGAGAAGGGGAGCGATCTCTCCAGGCTTGAAAAGTCCAAATCTCCAAGCGGGTTGGGGTGCCCGGCATCTCAAGGTCACGTTGACCCCAGGGGTCACAACTGTAGCCGGCTGAGCTCCTAGCCATGGCTTAGGGTGGTATGAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTTCTCGGGCCT------CCTGGGAGCCCCAGAAGATGAAAGGGAAGTTGGGGAAGGAGGAAAATCaccttggacaactactgcccctttcttagcctcagtttcctgtttgt-aaaatcagggagagactggactaCAATCAAGGCTTGTTAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882227 481 +  60714840 GGACCTCACCTGTCACCAGCAGCTCCAGGGCATCGCTGGGCTGGGACCAGACACCCGGCCCCCAGTCTGGCCTTTGGTAGAAGCAGCGGTAACTTCCCCCTTGGGCTGGAGTCACCACCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATTCCGGAAGAGAAGGGGAGCCATCTCTCCAGGCTTGAAAAGTCCAAATCTCCAAGCGGGTTGGGGTGCCCGGCACCTCAAGGTCACGTTGACCCCAGGGGTCACAACTGTAGCTGGCTGAGCTCCCAGCCATGGCTTAGGGTGGTATGAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTCCTCGGGCCT------CCTGGGAGCCCCAGAAGATGAAAGGGAAGTTGGGGAAGGAGGAAAATCaccttggacgattactgcccctttcttagcctcagtttcctgtttgt-aaaatcagggagagactggactaCAATCAAGGCTTGTTAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644370 481 - 106955855 GGACCTCACCTGTCACCAGCAGCTCCAGGGCATCGCTGGGCTGGGACCAGACACCCGGCCCCCAGTCTGGCCTTCGGTAGCAGCAGCGGTAACTTCCCCCTTGGGCTGGAGTCACCTCCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATCCCGGAAGAGAAGGGGAGCGATCTCTCCAGGCTTGAAAAGTCCAAATCTCCAAGCAGGTTGGGGTGCCCGGCACCTCAAGGTCACGTTGACCCCAGGGGTCACAACTGTAGCCGGCTGAGCTCCCAGCCATGGCTTAGGGTAGTATGAAGCTGGGGGGACTGAATAAACAGGGCTGCCTGGGTCCTCGGGCCT------CCTGGGAGCCCCAGAAGATGAAAGGGAAGTTGGGGAAGGAGGAGAATCaccttggacgattactgccccttacttagcctcagtttcgtgtttgt-aaaatcggggagagactggactaCAATCAAGGCTTGTTAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59931052 478 +  64156825 GGACCTCACCTGTCACCAGCAGCTCCAGGGGATCGCTGGGCTGGGACCAGACACCCGGCCTCCAGTCTGGCCTCCGGTAGCAGCAGTGGTAACTTCCCCCTTGGGCTGGAGTCACCTCCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATCCCGGAAGAGAGGGGGACCAATCTCTCCAAGCTTGAAAAGTCCAAATCTCCAGGCGGGTTGGGGTGCCCGGCACCTCAAGGTCACATTGACCCCAGGGGTCACAACTGTAGCCGGCTGAGCTCCCAGCCATGGCTTGGG---GTATAAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTCCTCGGGCCT------CCTGGGAGCCCCAGAAGATGACAGGGAAGTTGGGGAAGGAGGAAAATCaccttgaacgattactgcctctttctcagtctcagtttcctgtttgt-aaaatcagggagagactggactaCAATCACGGCTTGTTAA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47068524 478 +  51301725 GGACCTCACCTGTCACCAGCAGCTCCAGGGGATCGCTAGGCTGGGACCAGACACCCGGCCTCCAGTCTGGCCTCCGGTAGCAGCAGTGGTAACTTCCCCCTTGGGCTGGAGTCACCTCCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATCCCGGAAGAGAGGGGGACCAATCTCTCCAAGCTTGAAAAGTCCAAATCTCCAGGCGGGTTGGGGTGCCTGGCACCTCAAGGTCACATTGACCCCAGGGGTCACAACTGTAGCCGGCTGAGCTCCCAGCCATGGCTTGGG---GTATAAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTCCTCGGGCCT------CCTGGGAGCCCCAGAAGATGACAGGGAAGTTGGGGAAGGAGGAAAATCACCTTGAACGATTACTGCCTCTTTCTCAGTCTCAGTTTCCTGTTTGT-AAAATCAGGGAGAGACTGGACTACAATCACGGTTTGTTAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46774481 479 +  50890351 GGACCTCACCTGTCACCAGCAGCTCCAGGGGATCGCTGGGCTGGGACCAGACACCCGGCCTCCAGTCTGGCCTCCGGTAGCAGCAGTGGTAACTTCCCCCTTGGGCTGGAGTCACCTCCTCCAGAAAGAATTCTGCCAGCTCGGAGGACACATCCCGGAAGAGAGGGGGACCGATCTCTCCAAGCTTGAAAAGTCCAAATCTCCAGGCGGGTTGGGGTGCCCGGCACCTCAAGGTCACATTGACCCCAGGGGTCACAACTGTAGCCGGCTGAGCTCCCAGCCATGGCTTGGG---GTATAAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTCCTCGGGCCT------CCTGGGAGCCCCAGAAGATGACAGGGAAGTTGGGGAAGGAGGAAAATCaccttgaacgattactgcctctttctcagtctcagtttcctgtttgtaaaaatcagggagagactggactaCAATCACGGCTTGTTAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45338944 478 +  49145316 GGACCTCACCTGTCACCAGCAGCTCCAGGGCATCGCTGGGCTGGGACCAGACACCCGGCCCCCAGTCTGGCTTCCCATAGCAGCAGTGGTAACTTCCCCCTTGGGCTGGAGTCACCTCCTCCAGGAAGAACTCCGCCAGCTCCGAGGACACGTCTCGGAGGAGAAGGGGATCGGTCTCTCCAGACTTGAAAAGTGCAAATCTCCAGGCGGGTTGGGGTGCCCGGCACCTCAAGGTCACATTGACCCCGGGGGTCACAACCGAAGCTGGCCGAGCTCCCAGCCATGGCCTGGG---GTATGAAGCTGGGGGGACTGAATAAACGGGGCTGCCTGGGTCCTCGGACCT------CCTGGGAGCCCCAGAAGATGGAAGGGAAGTTGGGGAAAGAGGAAAATCaccctggacggttactacccctttctcagcctcagttccctgttggt-gaaatcagggggagactggacaacagtcaaggCTTGTTAA
i calJac3.chr22             C 0 I 569
s mm10.chr7                   3611574 443 + 145441459 AGACCTCACCCGTTACCAGCAGTTCCAGAACATTACTGGGCTGAGACCAGACACCTGGCCCCCAGTCTGTCTTGCGGTAGCGGCAGTGATAACTGCCCCCTTGGGCCGGAGTCACTTCTTCCAGGAAGAACTCAGCCAGCTCAACGGACACATCCCGGAGGAGCAGAGGGGTGACAAGGCCACTTTTGAAGAGTGCAAACCGCCAGGCAGATTGAGGTGCGCGGCAAGTCAAGGTCACGTTGATCCCAGGAGTCACAACTGCAGCAGGATGAGCTCCCAGCCATGGCTGGGG---GTATGAGGCTAGGGGCGCTTAATAAAAAAGACTGCTTGGGTCCTTAGGACCCTCCAACCCAGAAGGCCCAGGAGCTTAAGCAGAAGTCGGA-------------CACCATGAA---------CCTCTCTCT-------------------AT-AAAGAAGGGGAGGGCCTGGAATACAATCACAGCCGGCCTA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19573599 457 - 122678785 GGACCTCACCTGTCACCAGCAGTTCCAGTGTATCACTGGGGTGGGACCAGATACCCAGGTCCCAGCCAAGACTCCGGTAGCAGCAGTGGTAACTGCCCCCCTGGGCTGGGGTCACCTCCTCCAGGAAGAACTCTGCCAGCTCCATGGACACATCCCGGTACAGCACAGGAGTGATTTCTCCAGACTTGAAGAGTGCAAACCTCCAGGCAAGTTGAGGTGCCTGGCACCTCAAGGTCACGTTGACCCCAGGGGTTACAATTGCAGCAGGCTGAGCCTCCAGCCATGGCTTGGG---GTATAAGGCTGGGGAGACTGAATAAACAGAATT-CCTGGGTCCCTGGGCTT------CCTGG--------------------GCAGGTGGGGTGGGAAGAGAATCacctggggcagtccctgcctctttctcatcctcagttccctgcttat-aaaatagggaaggtgctggacCCCAGTCAAGGATTGTCAA
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282   1 +  59248254 I

a score=159370.000000
s hg38.chr19_GL949751v2_alt     71733 56 +   1002683 AACCAGGTGCAAATCAGAGGGGCAGGACAGAAACTTCTGAGCTTT----ACTCCACAGTT
s panTro4.chr19              59005205 56 +  63644993 AACCAGGTGCAAATCAGAGGGGCAGGACAGAAACTTCTGAGCTTT----ACTCCACAGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882708 56 +  60714840 AACCAGGTGCAAATCAGAGGGGCAGGACAGAAACTTCTGAGCTTT----ACTCCACAGTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644851 56 - 106955855 AACCAGGTGCAAATCAGTGGGGCAGGAGAGAAACTTCTGAGCTTT----ACTCCACAGTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59931530 56 +  64156825 AACCAGGTGCAAATCAGAGGGGCAGGACAGAAACTTCTGAGCTTT----ACTCCACAGTT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47069002 56 +  51301725 AACCAGGTGCAAATCAGAGGGGCAGGACAGAAACTTCTGAGCTTT----ACTCCACAGTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46774960 56 +  50890351 AACCAGGTGCAAATCAGAGGGGCAGGACAGAAACTTCTGAGCTTT----ACTCCACAGTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45339991 54 +  49145316 aaCCAGGTGCACATC--TGGGGCAGGACAGAAACTTCACAGCTTC----ACTCCACAGTT
i calJac3.chr22             I 569 C 0
s mm10.chr7                   3612017 56 + 145441459 AACAAGCTGACAATCACTGGAATAGTACTCTTAACTTTGAGCTTT----TCCCCATAGTT
i mm10.chr7                 C 0 I 3275
s canFam3.chr1               19574056 57 - 122678785 GACTAGCCGCAAATTAGAATAGCAGG---GTCACTCCTGAGCTTTATTGACTCCGTGTTT
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282  1 +  59248254 I

a score=111562.000000
s hg38.chr19_GL949751v2_alt     71789 65 +   1002683 TGTAAACACAGTTTCAAAAGGTCAGGTCCCAGAACTCTGTAA-TT-----TTATTATTattattattttta
s panTro4.chr19              59005261 65 +  63644993 TGTAAACACAGTTTCAAAAGGTCAGGTCCCAGAACTCTGTAA-TT-----TTATTATTattattattttta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882764 65 +  60714840 TGTAAACATAGTTTCAAAAGGTCAGGTCCCAGAACTCTGTAA-tt-----ttattattattattattttta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644907 65 - 106955855 TGTAAACATAGTTTCAAAAGGTCAGGTCCCAGAACTCTGTAA-TT-----TTATTAttattattattttta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59931586 59 +  64156825 TGTAAACACAGT-------AGTCAGGTCCCAGAACTCTGTAATTT-----TTTTtttttttttttttttta
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47069058 56 +  51301725 TGTAAACACAGT-------AGTCAGGTCCCAGaactctgtaa--------tttttttttttttttttttta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46775016 55 +  50890351 TGTAAACACAGT-------AGTCAGGTCCCAGAACTCTGTAA---------TTTTAttttattttttttta
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45340045 57 +  49145316 TGTAAACATAGTTTCAAAGTGTCAGGTCTCAGAAGTCTGTCA-TT-----TTATTCCTATTA--------A
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19574113 70 - 122678785 TTTAAACATAATGTCAAGGGATTGGGTCCCTGAAATCTGCAA-TTTTAAATTGTTCTTCAGACTATTTGTA
i canFam3.chr1              C 0 I 1653
e mm10.chr7                   3612073 3275 + 145441459 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=119402.000000
s hg38.chr19_GL949751v2_alt     71854 65 +   1002683 agtaatgagatgggagggggcggtctccctat----gttgagcaggttggtcttaaactactggcctca
s panTro4.chr19              59005326 61 +  63644993 agtaatgagatgggggggg----tctccctat----gttgagcaggttggtcttaaactactggcctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882829 61 +  60714840 agtaatgagatgggggggg----tctccctat----gttgaccaggttggtcttgaactactggcctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102644972 61 - 106955855 agtaatgagatgggggggg----tctccctat----gttgactaggttggtcttgaactactggcctca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59931645 60 +  64156825 agtaatgagatggggatg-----tctccctat----gttgcccaggctggtcttaaactgccagcctca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47069114 60 +  51301725 agtaatgagATGGgggtg-----tctccctat----gttgcccaggctggtcttaaactaccagcctca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46775071 60 +  50890351 agtaatcagatgggggtg-----tctccctat----gtcggccaggctggtcttaaactaccagcctca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45340102 63 +  49145316 AGTAATGAGATGGgggg------cctatctatattggttggccaggttggtcttcaactactggcctca
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=192351.000000
s hg38.chr19_GL949751v2_alt     71919 251 +   1002683 agcaatcctcccacctcggcctcccaaagtgctaagtttacaagcttgtgccaccacacccagA-------------Ctttttttttttt---------tttttttttttttgaggcagggtcttgctgtgttgctc-aggcaggagtgcagtggcatgttctcaactcactgcagcctcaatctcttgggctcaaacagtcctccacctcagcctcctgagtacctgggaccacaggcacatgccactacaccaggctaatttttttttt---tta
s panTro4.chr19              59005387 254 +  63644993 agcaatcctcccacctcggcctcccaaagtgctaagtttacaagcttgtgccaccacgcccagA-------------Ctttttttttttt---------tttttttttttttgaggcagggtcttgctctgttgctc-aggcaggagtgcagtggcatgttctcaactcactgcagcctcaatctcctgggctcaaacactcctccacctcagcctcctgagtacctgggaccacaggcacatgccgctacaccaggctaattttttttttattttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55882890 265 +  60714840 agcaatcctcccacctcggcctcccaaagtgctaagtttacaagcttgtgccaccacgcccagACttttttttctttctttttttttttt---------tttttttttttttgaggcagggtcttgctctgttgctcaaggcaggagtgcagtggcatgttctcaactcactgcagcctcaatctcctgggctcaaacaatcctccacctcagcctcctgagtacctgggaccacaggcacatgccactacaccaggctaatttttttttt---tta
i ponAbe2.chr19             C 0 I 324
s nomLeu3.chr10             102645033 245 - 106955855 agcaatcctcccagctcggcctcccaaagtgctaagtttacaagcttgtgccaccacgcccagA------------------Cttttctt---------tttttttttttttgaggcagggtcttgctctg-tgctc-aggcaggagtgcagtggcatgttctcaactcactgcagcctcaatctcctgggctcaaatgatcctccacctcagcctcctgagtacctgggaccacaggcacatgtcactacaccaggctaattttttttat---ttt
i nomLeu3.chr10             C 0 I 333
s calJac3.chr22              45340165 260 +  49145316 agcagtcctcccaccttggcttctcagagtgctaagattacaacctggtgccgctgcgcccggA-------------CTATTGtttttttaatttattattattatttttttgagacagggtgttgctctgttgctc-aggcaggagtgcagtggtgtgttctcagctcactgcagcctcaacctcctgagttcaaacaatcctctgcctcagcctcctgagttcctgggaccacaggcgcacggtgctacaccaggctgttttttttgtt---act
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46775131   0 +  50890351 C
e papAnu2.chr19              47069174   0 +  51301725 C
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59931705   0 +  64156825 C

a score=46982.000000
s hg38.chr19_GL949751v2_alt     72170 61 +   1002683 atttttagtagagacgagcattcgctatattgcccaggctactcttgaactcttgggctcg
s panTro4.chr19              59005641 61 +  63644993 atttttagtagagacgagcattcgctatattgcccaggctactcttgaactcttgggctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55883479 61 +  60714840 atttttagtagagacgagcattcactatgttgcccaggctactgtcaaactcttgggctca
i ponAbe2.chr19             I 324 C 0
s nomLeu3.chr10             102645611 61 - 106955855 atttttagtagagatgagcattcgctatgttgcccaggctactctcgaactcttgggctca
i nomLeu3.chr10             I 333 C 0
s calJac3.chr22              45340425 61 +  49145316 atcagtagtagggacaagcatttgctatgttgcccggactagtctcgaacccctgggctca
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46775131  0 +  50890351 C
e papAnu2.chr19              47069174  0 +  51301725 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59931705  0 +  64156825 C

a score=291544.000000
s hg38.chr19_GL949751v2_alt     72231 120 +   1002683 agcaatcctcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcccagccAGAACTCTAATTTTAAATAGCTTTCCAGAATATTTGCAATATAGTATTTCAAGAG
s panTro4.chr19              59005702 120 +  63644993 agcaatcctcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcccagccAGAACTCTAATTTTAAATAGCTTTCCAGAATATTTGCAATATAGTATTTCAAGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55883540 120 +  60714840 agcaatcctcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcccagccAGAACTCTAATTTTAAATAGCTTTCCAGAATGTTTGCAATATAGTATTTCAAGAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102645672 120 - 106955855 agcagtcctccccccttggcctcccaaagtgctaggattacaggtgtgagtcaccacgcccagccAGAACTCTAATTTTAAATAGCTTTCCAGAATATTTGCAATATAGTATTTCAAGAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59931705 120 +  64156825 agcaatcctctcaccttggcctcccaaagttctgggattacgggtgtgagccaccacacccagccAGAACTCTAATTTTAAATAATTTTCCAGAATATTTGCAATATAGTATTTCAAGAG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47069174 120 +  51301725 agcaatcctcccaccttggcctcccaaagttctgggattatgggtgtgagccaccacacccagccaaaactctaattttaaataactttccaGAATATTTGCAATATAGTATTTCAAGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46775131 120 +  50890351 agcaatcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccacacccagccAGAACTCTAATTTTAAATAACTTTCCAGAATATTTGCAATATAGTATTTCAAGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45340486 120 +  49145316 agcgatcctcccaccttggcctcccaaagtgctgagcttacagatgtgagccaccacacccagccAGAACTCCAATTTTAAATAGCTTTCCAGAATATATGCTATATAATATTTCAAGAG
i calJac3.chr22             C 0 I 300
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=467744.000000
s hg38.chr19_GL949751v2_alt     72351 212 +   1002683 TTGCCAAAACTTG----ctatttggaa--aagaaaaa--tgttggatccctacctcataccatttcccaaaacaacttccagattaattaaagac---cctgtgtttctttttttttaaactataaaagtattcaaaaaactataggaaaatatatttgtcttggggtaaggaaggcttcttaaaatataaaataaaaagttgtatggaagattaattaattt
s panTro4.chr19              59005822 213 +  63644993 TTGCCAAAACTTG----ctatttggaa--aaaaaaaa-atgttggatccctacctcacaccatttcccaaaacaacttccagattaattaaagac---cctgtgtttcattttttttaaactataaaagtattcaaaaaactataggaaaatatatttgtcttggggtaaggaaggcttcttaaaatataaaataaaaagttctatggaagattaattaattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55883660 213 +  60714840 TTGCCAAAACTTG----ctatttggag--aaaaaaaaaatgttggatccctacctcacaccatttcccaaaacaatttccagattaattaaagac---cctgtgtttcatttttttt-aactataaaagtattcaaaaaactataggaaaatatatttgtcttggggtaaggaagtcttcttaaaatataaaataaaaagttctatggaagattaattaattt
i ponAbe2.chr19             C 0 I 163
s nomLeu3.chr10             102645792 213 - 106955855 TTGCCAAAACTTG----ctatttggaa--aaaaaaaa-aagttggagccctacctcacaccatttcccaaaacaacttccagattaattaaagac---cctgtgtttcatttttttttaactataaaagtattcaaaaaactataggaaaatatatttgtcttggggtaaggaaggcttcttaaaatataaaataaaaagttttatggaagattaattaattt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59931825 215 +  64156825 TTGCCAAAACTTA----ctatttggaag-aaaaaaaa-atgttggatccctacctcacaccatttcccaaaacaactttcagattaattaaagacctacctgtgtttcattttttt--aactataaaattattcaaaaaactataggaaaatatatttgtcttggggtaaggaaggcttcttaaaatataaaataagaagttctatggaagattaattaattt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47069294 216 +  51301725 TTGCCAAAACTTa----ctatttggaagaaaaaaaaa-atgttggatcCCTACCTCACATCATTTCCCAAAACAACTTTCAGATTAATTAAAGACCTAcctgtgtttcattttttt--aactataaaattattcaaaaaactataggaaaatatatttgtcttGGGGTAAGGAAggcttcttaaaatataaaataagaagttCTATGGAAGATTAATTAATTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46775251 213 +  50890351 TTGCCAAAACTTA----CTATTTGGAAgaaaaaaaaa-atgttggatccctaccccacaccatttcccaaaacaactttcagattaattaaagacctacctgtgtttcattttttt--aactataaaattattcaaaaaactataggaaaatatatttgtcttggggtaaggaaggcttcttaaaatataaaat---aagttctatggaagattaattaattt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45340906 214 +  49145316 TTGCCAAAACTTGTTATCTATTAGGGA--ggaaaaaa-atgttggttccctacctcacaccattcccctaaacaacttccagattaattaaagacctacctgtgtttcattttttt--aattatcagagtattcaaaaaactataggaaaatttctttgtcttggggtagggagggcttcgtaaaatataaaataaaaagttctaTGGAGGATTAATTT----
i calJac3.chr22             I 300 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=1250223.000000
s hg38.chr19_GL949751v2_alt     72563 576 +   1002683 gaccacttcaaatttcttaagttgtgtatgctaaaagacaAAACTGGAGGACAAATGATAGTACTGGCAGATATCACTTATTCACAAATCACACAAATTAAGAGTACAGGAAGGCTGTTgggtccggtggctcacagctgtaatcccagcactttgggaggccaaggtgggtgcatcacctgaggtcaggagttcaagaccagcctgaccaacatggtaaaatcccatctctactaaaaacagaaaaattagccaggcgtggtagtgctagcttgtagttccagctgtttgggatgctgagtaggagaattacttgaaccctagagtcggaggctgcagttagctgagatcatgccactgcactccagcctgggcaacagagtgagaactc----------------------------------catGGTGGCATG---------------CACTttgggaggctgaggctggaggattgtctgagcccaggaattcaaagctgcagtgagctatgatagagccaccgtactccagcccgggtgacacaatgagaccccatctctaa----aaatgaataaaaataaGggtcggg-tgagggggctcatgtttgtaatcccaacacttt
s panTro4.chr19              59006035 576 +  63644993 gaccacttcaaatttcttaagttgtgtatgctaaaagacaAAACTAGAGGACAAATGATAGTACTGGCAGATATCACTTATTCACAAATCACACAAATTAAGAGTATAGGAAGGCTGTTgggtccggtggcccacagctgtaatcccagcactttgggaggccaaggtgggtgcatcacctgaggtcaggagttcaagaccagcctgaccaacatggtaaaatcccatctctactaaaaacagaaaaattagccaggcgtggtagtgctagcttgtagttccagctgtttgggatgctgagtaggagaattacttgaaccctagagtcggaggctgcagttagctgagatcatgccactgcactccagcctgggcaacagagtgagaactc----------------------------------catGGTGGCATG---------------CACTttgggaggctgaggctggaggattgtctgagcccaggagttcaaagctgcagtgagctatgatagagccactgtactccagctcgggtgacagaatgagaccccatctctaa----aaatgaataaaaataaGggtcggg-tgagggggctcatgtttgtaatcccaacacttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55884036 577 +  60714840 GACCACTTCAAATTTCTTAAGTTGTGTATGCTAAAAGACAAAACTAGAGGACAAATGAGAGTACTGGCAGATATCACTTATTCACAAATCACACAAATTAAGAGTACAGGAAGGCTgctgggtccggtggctcacagctgtaatcccagcactttgggaggccaaggtgggtgcatcacctgaggtcaggagttcaagactagcctgaccaacatggtaaaatcccatctctactaaaaacagaaaaattagccaggtgtggtagtgctagcctgtagttccagctgtttgggaggctgagtaggagaatcacttgaaccctagagtcggaggctgcagttagctgagatcatgccactgcactcccgcctgggcaacagagtgagaactc----------------------------------catGGTGGCATG---------------CACTttgggaggctgaggctggaggattctctgagcccaggagttcaaagctgcagtgagctatgatagagccactgtactccagcccgggtgacagaatgagaccccgtctctaa----aaatgaataaaaataaGggtcgggttgagggggctcatgtttgtaatcccaacacttt
i ponAbe2.chr19             I 163 C 0
s nomLeu3.chr10             102646005 576 - 106955855 gaccacttcaaatttcttaagttgtgtatgctgaaagacaAAACTAGAGGACAAATGACAGTACTGGCAGATATCACTTATTCACAAATCACACAAATTAAGAGTACAGGAAGGCCgctgggtccggtggctcacagctgtaatcccagcactttgggaggccaaggtgggtgcatcacctgaggtcaggagttcaagaccagcctgaccaacatggtaaaatcccatctctactaaaaacagaaaaattagccaggcgtggtagtgctagcctgtagttccagctgtttgggaggctgagtaggagaatcacttgaaccctagagtcagaggctgcagttagctgagatcatgccactgcactccagcctgggcaacagagtgagaactc----------------------------------catGGTGGCATG---------------CACTttgggaggctgacgctggaggattgtctgagcctaggagtttgaagctgcagtgagctatgatagagccactgtactccagcccgggtgacagaatgagaccccatctctaa----aaatgaataaaaataaGggtcagg-tgagggggctcatgtttgtaatcccaacacttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932040 567 +  64156825 gaccacttcaaatttcttaagttgtgtatgctaaaagacaAAACTGGAGGACAAATGACAGTACTGGCAGACATCACTTATTCACAAATCACAC-----AAGAGTATAGGAAGGCTgccaggtgtggtagcttatggctgta-----agcgctttgggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccagcatggtgaaatcctgtctcaactaaaaacacaaaaattagtcgggtgtggtggtgctagcttgtagtcccagctgtttgggaggctgagcaggagaattgcttgaaccctagaggcggaggttgcagttagccaagatcatgccactgcactgcagcctgagcagcagagtgagaactc----------------------------------catGATGACGTG---------------CACTttgggaggctgaggctggaggattgcctgagcccaggagttcgaagctgcaatgaactatgatagagccacttcacgccagccttggtgacagaattaag---cgtctttaaaaataaataaataaaaataaGggtcagg-tgagggggctcatgtttgtaatcccagcacttt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47069510 572 +  51301725 GACCACTTCAAATTTCTTAAGTTGTGTATGCTAAAAGACAAAACTGGAGGACAAATGACAGTACTGGCAGACATCACTTATTCACAAATCACAC-----AAGAGTATAGGAAggctgccaggtgtggtggcttatggctgtaatcccagcgctttgggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccagcatggtgaaatcctgtctcaactaaaaacacaaaaattagtcgggtgagGTGGTGctagcttgtagtcccagctgtttgggaggctgagcaggagaattgcttgaaccttagaggcggaggttgcagttagccaagatcatgccactgcactgcagcctgagcagcagagtgagaaCTC----------------------------------CATGATGacgtg---------------cactttgggaggctgaggctggaggattgcctgagcccaggagttcgaagctgcaatgagctatgatagagccactgcactccagcctgggtgacagaatgaag---catctttaaaaataaataaataaaaataagggtcAGG-TGAGggggctcatgtttgtaatcccagcacttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46775464 572 +  50890351 gaccacttcaaatttcttaagttgtgtatgctaaaagacaAAACTAGAGGACAAATGACAGTACTGGCAGACATCACTTATTCACAAATCACAC-----AAGAGTATAGGAAGGCTgccaggtgtggtggcttatggctgtaatcccagcgctttgggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccagcatggtgaaatcctgtctcaactaaaaacacaaaaattagtcgggtgtggtggtgctagcttgtagtcccagctgtttgggaggctgagcaggagaattgcttgaaccctggaggcggaggttgcagttagccaagatcatgccactgcactgcagcctgggcaacagagtgagaactc----------------------------------catGATGATGTG---------------CACTttgggaggctgaggctggaggattgcctgagcccaggagttcgaagctgcaataagctatgatagagccactgcactccaggctgggtgacagaatgaag---catctttaaaaataaataaataaaaataaGggtcagg-tgagggggctcatgtttgtaatcccagcacttt
i chlSab2.chr6              C 0 I 8
s calJac3.chr22              45341120 613 +  49145316 GACCGCTTCAGATTTCTTAAGTTGTGTATGCTAAAAGACAAAACTAGAGGACAAATGACAGTACTGGCAGACATCACTTATCCACAAATCACACAAATTAAGAGTGTAGGAAGGCTGCGGCGCTCAGT-gctcacacctgcaatcccagcactttgggaggccgagatgggtggatcacctgaggtcaggagttcgagaccaccctggccgacatggtgaaatcctatctctaccaaaaatgcaaaacttcgccagttgtggtggtgctagcctgtagtcccacctggttcagaagctgagcaggagaactgcttgaacccaggaggcggaggtt--------tcgtgagcacaccactgctctccaacctgggcaac--agtgagactccacccaccgaaaaaaaaaaaaaaaCCTTAgctaggcatggtggcatgcacctgtaattccaacactttgggagactgagg-tggaggattgtctgagctcaggagtttgaagctgcagtgagctatgatcgtgccactgcattccagcctgggtgacagaatgagaccctgtctctaa----aaaataaaaataataaGAgtcagg-catggtggctcatgcctgtaatcccagcacttt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=65577.000000
s hg38.chr19_GL949751v2_alt     73139 36 +   1002683 gggaggctgaggcagagggatcacctgaggtcagga
s panTro4.chr19              59006611 36 +  63644993 gggaggctgaggcagagggatcacctgaggtcagga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55884613 36 +  60714840 gggaggctgaggcagagggatcacctgaggtcagga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102646581 36 - 106955855 gggaggctgaggcagagggatcacctgaggtccgga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932607 36 +  64156825 gggaggccaaggcagagggatcacctgaggtcagga
i rheMac3.chr19             C 0 M 82
s papAnu2.chr19              47070082 36 +  51301725 gggaggccaaggcagagggatcacctgaggtcagga
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45341733 36 +  49145316 gggaggtcaaggcagatggatcacctgaggtcaggc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46776036  8 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=177720.000000
s hg38.chr19_GL949751v2_alt     73175 140 +   1002683 gttccagaccagcctgaccaacatggggaaaccctgtctctactaaaaatacaaaaattatccgggcattgtggtgtgtgcctgtagtcccagctactcaggaggctgaggcaggagaatcccttgaacccaggaggtgg---
s panTro4.chr19              59006647 140 +  63644993 gttccagaccagcctgaccaacatggggaaaccctgtctctactaaaaatacaaaaattatccgggcattgtggtgtgtgcctgtagtcccagctactcaggaggctgaggcaggagaatcccttgaacccaggaggtgg---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55884649 140 +  60714840 gctccagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattacccgggcattgtggtgtgtgcctgtagtcccagctactcgggaggctgaggcaggagaatcccttgaacccaggaggtgg---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102646617 140 - 106955855 gttccagaccagcctgaccaacatggtgaaaccctgtctctactaaaaataaaaaaattatccaggcattgtggtgtgtacctgtagtcccagctactcgggaggctgaggcaggagaatcccttgaactcaggaggtgg---
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47070118 140 +  51301725 gttccagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattatctgggcactgtggtgcatgcctgtagtcccagctactcgggaggctgaggcaggagaatcccttgaacccaggaggtgt---
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45341769 143 +  49145316 gtttcagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaactagctagacattgtggtgcgtgcctgtagtcccagctacgcgggaggctgaggcaggagaatcccttgaaccaaggaggcagagg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46776036   8 +  50890351 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59932643  82 +  64156825 M

a score=110055.000000
s hg38.chr19_GL949751v2_alt     73315 91 +   1002683 ttgcagtgagccgagattgcaccactgcactccggcctgggcgacagagagaaactggtctcaaaataaataaataaataaataaa-------at-aaa
s panTro4.chr19              59006787 95 +  63644993 ttgcagtgagccgagattgcaccactgcactctggcctgggcgacagagagaaactggtctcaaaataaataaataaataaataaata---aaat-aaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55884789 99 +  60714840 ttgcagtgagccgagactgcaccactgcactccggcctgagcgacagagagagactggtctcaaaataaataaataaataaataaataaataaataaaA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102646757 79 - 106955855 ttgcagtgagccaagattgcaccactgcactctggcctgggcgacagag----actggtctctaaataagtaaataaata----------------aaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932726 89 +  64156825 ttgcagtgagctgagatcgtaccactgcactccaacctgggcgacagag----ACTCATCTCaaaataaataaataaaataaaata-----aaat-aaa
i rheMac3.chr19             M 82 I 10
s papAnu2.chr19              47070258 89 +  51301725 ttgcagtgagctgagatcgtaccactgcactccaacctgggcgacagag----actcatctcaaaataaataaataaaataaaata-----aaat-aaa
i papAnu2.chr19             C 0 I 56
s calJac3.chr22              45341912 91 +  49145316 ttgcagtgagccaagactgtgccattgcactccagcctggacgacagagggagatctgtttcaaaaaaaaaaaaaaaaaaaaaaaa------aGT-AG-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46776036  8 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=92477.000000
s hg38.chr19_GL949751v2_alt     73406 115 +   1002683 taGGTAGAGATAGCTATA-GCGACACTGAAATATCTCCAAAAGAGTTtttgtttgtttgtttgtttgtttgtttttgaagtggagtcttgcac-tgtcacccaggctggagtgcagt
s panTro4.chr19              59006882 111 +  63644993 taGGTAGAGATAGCTATA-GTGACACTGAAATATCTCCAAAAGAGTTtttgtttgtttgtttgtttgttt----ttgaggtagagtcttgcac-tgtcacccaggctggagtgcagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55884888 115 +  60714840 TAGGTAGAGATAGCTATA-GTGACACTGAAATATCTCCAAGAGAGTTtttgtttgtttgtttgtttgtttgtttttgaggtggagtcttgcac-tgtcacccaggctggagtgcagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102646836 107 - 106955855 TAGGTAGAGATAGCTATA-GTGACACTGAAATATCTCCAAGAGAGtttttgtttgtttgtttgttt--------ctgaggtggagtcttgcac-tgtcacccaggctgcagtgcagt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932825 106 +  64156825 aAGGTAGAAATAGCTATA-GTGACATTGAAATATCTCCAAGAG-Gtttttgtttgtttttttgttt--------ttgagacggagtctcgccc-tgtcgcccaggctggagtgcagt
i rheMac3.chr19             I 10 C 0
s calJac3.chr22              45342003  91 +  49145316 TATGTAAATACAGATATGTGTGTGGTTG----------CATGGAATTTTTTTTTTTTT----------------TTGATAAGGAGTTTTACTCTTATTTCCCAGGCTTGAGTGTAAT
i calJac3.chr22             C 0 I 1511
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46776036   8 +  50890351 I
e papAnu2.chr19              47070347  56 +  51301725 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=19761.000000
s hg38.chr19_GL949751v2_alt     73521 30 +   1002683 ggcgcgatctcagcttactgcaa---------------------------cctctgc
s panTro4.chr19              59006993 30 +  63644993 ggcgcgatctcagcttactgcaa---------------------------cctctgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885003 30 +  60714840 ggcgtgatctcagcttactgcaa---------------------------cctctgc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102646943 57 - 106955855 ggcacaatctcagcttactgcagggctgggattacctgttttacctcagctctctgc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932931 30 +  64156825 ggcacgatctcggctcactgcaa---------------------------cctccgc
i rheMac3.chr19             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e calJac3.chr22              45342094 1511 +  49145316 I
e chlSab2.chr6               46776036  8 +  50890351 I
e papAnu2.chr19              47070347 56 +  51301725 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=9083.000000
s hg38.chr19_GL949751v2_alt     73551 9 +   1002683 ctcctgggt
s panTro4.chr19              59007023 9 +  63644993 ctcctgggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885033 9 +  60714840 ctcctgggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647000 9 - 106955855 ctcctgggt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932961 9 +  64156825 ctcccaggt
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45343605 9 +  49145316 ctcccgacc
i calJac3.chr22             I 1511 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46776036 8 +  50890351 I
e papAnu2.chr19              47070347 56 +  51301725 I
e macFas5.chr19              54942282 1 +  59248254 I

a score=280323.000000
s hg38.chr19_GL949751v2_alt     73560 205 +   1002683 tcaagcgattctcttgcctcagcctcctgagtagctgggattacaggtgcgtcccaccacacccggctaatttttttttttttttttttttttttttagtagagacggggtttcaccacattagccaggatgatctcgatc---tgaccttgtg--atccgcccgcctctgcctcccaaagtgctgggattacag--acgttggccattgcg
s panTro4.chr19              59007032 205 +  63644993 tcaagcgattctcttgcctcagcctcctgagtagctgggattacaggtgcgtcccaccacacccggctaatttttttttttttttttttttttttttagtagagacggggtttcaccacattagccaggatgatctcgatc---tgaccttgtg--atccgcccgcctctgcctcccaaagtgctgggattacag--acgttggccattgcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885042 204 +  60714840 tcaagtgattctcttgcctcagcctcctgagtagctgggattacaggtgcgtcccaccacacctggctaa-tttttttttttttttttgtaatttttagtagagatggggtttcaccacattagccaggatggtctcgatc---tgaccttgtg--atccgcccacctctgcctcccaaagtgctgggattacag--acgttggccattgcg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647009 191 - 106955855 tcaagcgattctcttgcttcagcctcctgagtagctgggattacaggtgtgtcccaccacacctggctaatatatttt--------------tttttagtagagacggggtttcaccacgtt--ccaggatggtctccatc---tgacctcgtg--atctgcccgcctctgcctcccaaagtgctgggattacagacacgttggccattgcg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59932970 203 +  64156825 tcaagcgattctcctgcctcagcctcctgagtaactgggattacagacgcgtcccaccatatccggctaa-ttttttttttttttttttgt-tttttagtagagatggggtttcaccgtgttagccgggatggtcgcgatc---tgacttcatg--atccgcccgcctcggcctcccaaagtgctgggattacag--acatgagctactgtg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47070403 205 +  51301725 tcaagcgattctcctgcctcagcctcctgagtaactgggattacagacgcgtcccaccatgtccggctaatttttttttttttttttttgtatttttagtagagatggggtttcaccgtgttagccgggatggtctcgatc---tgacttcatg--atctgcccacctcggcctcccaaagtgctgggattacag--acatgagctactgtg
i papAnu2.chr19             I 56 C 0
s calJac3.chr22              45343614 194 +  49145316 tcaggtgatctgcccgccttggcctccaaagt-gctcggattacaggcgtgagccaccacgcctggccA---------------TGTGtgtagtttcagtagagatggggtttcaccatgttgcccaggctggtctcagactcttgagctcaagccatccacccaccttgtcttcccaaagggctgggattacag--acgtgagccactatg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e canFam3.chr1               19574183 1653 - 122678785 I
e chlSab2.chr6               46776036   8 +  50890351 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=310651.000000
s hg38.chr19_GL949751v2_alt     73765 193 +   1002683 cccagccCAaga-tcctatttcttaagccct-gtactgtgccaggctcagggttttgcacatgtgatttgatgagat-ctcacagcggcccattttacagagaaggaaatggagtcttagcaagctgtgacttgttctaggtcatatggtcacatataaatgaatacgatggtgaaactgaggtcctagcttaggc--
s panTro4.chr19              59007237 193 +  63644993 cccagccCAaga-tcctatttcttaagccct-gtactgtgccaggctcagggttttgcacatgtgatttgatgagat-ctcacagcggcccattttacagagaaggaaatggagtcttagcaagctgtggcttgttcaaggtcatatggtcacatataaatgaatacgatagtgaaactgaggtcctagcttaggc--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885246 191 +  60714840 cccagccCAaga-tcctatttcttaagccct-gtactgtgtcaggctcagggttttgcacatgtgatttgatgaaat-ctcacagcggcccattttgccgagaaggaaatggagtcttagcaagctgtggcttgttcaaggtcatgtggt--catataaatgaatacgatggtgaaactgaggtcctagcttaggt--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647200 191 - 106955855 cccagccCAaga-tcctatttcttaagccct-gtactgtgccaggctcagggttttgcacatgtgatttgatgaaat-ctcacagcggcccattttacagagaaggaaatgaagtcttagcaagctgtggcttgttcaaggtcatatggt--catatcaatgaatacgatggtaaaactgaggtcctagcttaggc--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59933173 171 +  64156825 cccggtcCAaga-tcctatttcttaagccct-gcactgtgccaggctcagggttttgcacatatgatttgataaaat-ttcacagcggcccattttacagagaaggaaatggagtcttagcaagctgtggcttgttcaaagt----------cgtataaatgaatacgatggtgaaactgaggc--------------
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47070608 171 +  51301725 cccggtcCAAGA-TCCTATTTCTTAAGCCCT-GCACTGTGCCAGGCTCAGGGTTTTGCACATGTGATTTGATGAAAT-TTCACAgcggcccattttacagagaaggaaatggagtCTTAGCAAGCTGTGGCTTGTTCAAAGT----------CGTATAAATGAATACGATGGTGAAACTGAGGC--------------
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45343808 149 +  49145316 -ccggccCAAGA-TCCTGTTTCTTAAGCCCTGGCACAGTGCCAGGCTCAGGGTTTTGTACATGTGATTTTATGAAAT-TTCTCAGTGGCCCATTTTACAGAGAAGGAAATGGAGTCTTGGCACACTGTGGCTTATT--------------------------AATACGATAGTGAAGC--------------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19575836 180 - 122678785 ccaagatcaagagtcccatgctctatggact-gagcta-gccaggcTCCTGG-TAtacatgggtgattttattaaatcctcacaatagcctatttcacagagaaggaaactgag---tagcaagtgatgctttgttcaaagt------------tgcaagtgaataatatggtgaaagtggggttctagcttagagat
i canFam3.chr1              I 1653 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e chlSab2.chr6               46776036   8 +  50890351 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=163610.000000
s hg38.chr19_GL949751v2_alt     73958 58 +   1002683 ctctgcctcagaagttcctggtcttcagtactcacctataatgGCCACTAAGGGGAAT
s panTro4.chr19              59007430 58 +  63644993 ctctgcctcagaagttcctggtcttcagtactcacctataatgGCCACTAAGGGGAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885437 58 +  60714840 ctctgcctcagaagttcctggtcttcagtactcacctataatgGCCACTAAGGGGAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647391 58 - 106955855 ctctgcctcagaagttcctggtcttcagtactcacctataatgGCCACTAAGGGGAAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59933344 58 +  64156825 ctctgcctcagaagttcctgctcttcagtactcACCTATAATGACCACTAAGgggaat
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47070779 58 +  51301725 CTCTGCCTCAGAAGTTCCTGCTCTTCAGTACTCACCTATAATGACCACTaaggggaat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776044 58 +  50890351 CTCTGCCTCAGAAGTTCCTGCTCTTCAGTACTCACCTATAATGACCACTAAGGGGGGT
i chlSab2.chr6              I 8 C 0
s calJac3.chr22              45343957 58 +  49145316 CTCTGCCTCTGAAGCGCCTGGCCTTCACTCCTCACCTATAATGGCCACTAAAGGGAAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19576016 58 - 122678785 ctttagttccaaagttcatggtctttactactcacctatcctgGTCACTAAagggagt
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3612073 3275 + 145441459 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=526563.000000
s hg38.chr19_GL949751v2_alt     74016 185 +   1002683 --------GAGAAAA----GAAGGA--------------------AGGAATGGA-------------------------GGGAGGGAGGAAAATAAGGATATCTGGGATGGGATTGGGCACCAAAATAAAATCTGAGTAAT----TGGAAAAGGGGTGTCAGCAACA-AAAGGAGAGTGGATGGGGTGG-CTACTCACCAGACGGAGTGATGTCTGTGTGACACAGAGGCCCTGTAGGAGGTTGAGGG
s panTro4.chr19              59007488 185 +  63644993 --------Gagaaaa----gaagga--------------------aggaatgga-------------------------gggagggaggaaaataagaaTATCTGGGATGGGATTGGGCACCAAAATAAAATCTGAGTAAT----TGGAAAAGGGGTGTCAGCAACA-AAAGGAGAGTGGATGGGGTGG-CTACTCACCAGACGGAGTGATGTCTGTGTGACACAGAGGCCCTGTAGGAGGTTGAGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885495 190 +  60714840 --------Gagaaaagaaggaagga--------------------aggaatgga-------------------------gggagggaggaaAATAAGGATATCTGGGATGGGATTGGGCACCAAAATAAAATCTGAGTAGT----TGGAAAAGGGGTGTCAGCAACGTAAAGGAGAGTGGATGGGGTGG-CTACTCACCAGATGGAGTGATGTCTGTGTGACACAGAGGCCCTGTAGAAGGTTGAGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647449 190 - 106955855 --------GAgaagagaaggaagga--------------------aggaatgga-------------------------gggagggaggaaAATAAGGATATCTGGGATGGGATTGGGCACCAAAATAAAATCTGAGTAGT----TGGAAAAGGGGTGTCAGCAACATAAAGGAGAGTGGATGGGGTGG-CTACTCACCAGACGGAGTGATGTCTGTGTGACACAGAGGCCCTGTAGAAGGTTGAGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59933402 190 +  64156825 --------gagaaaagaaggaagga--------------------atggaggga-------------------------gggagggaggaaaataaggaCTTCTGGGATGGGATTGGGCACCAAAATAAAATCTGAGTAGT----TGGAAAAGGGGTGTCAGCGACATAAAGGAGAGTGGATGGGGCAG-CTACTCACCAGATGGAGTAATGTCCGTGTGACACAGAGGCCCTGTAGAAGGTTGAGGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47070837 190 +  51301725 --------gagaaaagaaggaagga--------------------atggaggga-------------------------gggagggaggaaaataaggacttctgggatgggaTTGGGCACCAAAATAAAATCTGAGTAGT----TGGAAAAGGGGTGTCAGCGACATAAAGGAGAGTGGATGGGGCAG-CTACTCACCAGATGGAGTAATGTCCGTGTGACACAGAGGCCCTGTAGAAGGTTGAGGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776102 210 +  50890351 --------GagaaaagaaggaaggaaggaaggaaggaaTggagggagggaggga-------------------------gggagggaggAAAATAAGGACTTCTGGGATGGGATTGGGCACCAAAATAAAATCTGAGTAGT----TGGAAAAGGGGTGTCAGCGACATAAAGGAGAGTGGATGGGGCAG-CTACTCACCAGATGGAGTAATGTCCGTGTGACACAGAGGCCCTGTAGAAGGTTGAGGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45344015 190 +  49145316 --------Gaggaaa----gaagga--------------------aggaatgga-------------------------gggagggaggaaAATAAGGACATCGGGGATGGGATTGGGCACCACAATAAAATCTGAGTCGTTTTATGGAAAAGCAGTGTCAGCGACATGAAGGAGAGCGGAAGGGGTGG-CTACTCACCAGGTGGAGTGCTGTCCGTGTGACACAGAGGCCCTGTAGAAGGGGGAGGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3615348 185 + 145441459 --------gaggaag----ggatgg--------------------aaggagaga-------------------------ggaagagaggggaatgagggaATCTGGGGTGAAGCTAGGCACAAAGATAAAA--TGAGTTGT----TGGAGGCGAGGTGTGAGCAGCATAGCATAGAGCAGGTGGAGTCTCCCACTCACCTGTTGGTGTGAAGTCAGCACGGCATGCAGGCCCTGCAGAAGGTGAAGAG
i mm10.chr7                 I 3275 I 4
s canFam3.chr1               19576074 186 - 122678785 aagatgagaaggaaagaaagggggg--------------------agaaagggaagaaaagatgtaagaagagaggagcgggagggagggaAATCTGGAAATCTGGGGTGAGCTTGGGCACCAAAATAAAATCTGAGTAGT----TGGAAATGGGCTGTCAGTGGCTTACAGCTGAATGGCTGGGGGATATTACTCACCAGTTGGAGTGA--------------------------------------
i canFam3.chr1              C 0 C 0
e macFas5.chr19              54942282   1 +  59248254 I

a score=52770.000000
s hg38.chr19_GL949751v2_alt     74201 36 +   1002683 ACTAGtttc--------tttttcctttttttttttt-tgtctgag
s panTro4.chr19              59007673 35 +  63644993 ACTAGtttc--------tttttcctttttttttttt--gtctgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885685 27 +  60714840 ACTAGtttc----------------ttttttttttt--gtctaag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647639 37 - 106955855 ACTAGttcc--------tttttttttttttttttttttgtctgag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59933592 34 +  64156825 ACTAGTTCC---------tttttttttttttttttt--gtctgag
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47071027 39 +  51301725 actagttcc----ttttttttttttttttttttttt--gtctgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776312 32 +  50890351 ACTAGTTCC-----------tttttttttttttttt--gtctgag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45344205 43 +  49145316 GCTAGTTCCTTCCttttttttttttttttttttttt--gtctgag
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19576260  8 - 122678785 -----------------------------------T--GTCTGAA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3615533  4 + 145441459 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=355346.000000
s hg38.chr19_GL949751v2_alt     74237 158 +   1002683 gcagactctcactctgtcgcccaggctggagtgtagtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctccgtagtagctgggactacaagtgcccgccaccacaccaggctaatctttgtatttt
s panTro4.chr19              59007708 158 +  63644993 gcagagtctcactctgtcgcccaggctggagtgtagtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctccgtagtagctgggactacaagtgcccgccaccacaccaggctaatctttgtatttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885712 158 +  60714840 acagagtctcactctgtcgcccaggctggagtgtagtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattcccctgcctcagcctccgtagtagctgtgactacaagtgcccaccaccacaccaggctaatctttgtatttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647676 158 - 106955855 acagagtctcactctgtcgcccaggctggcgtgtagtggtgtgatctcagctcaatgcaacctctgcctcccaggttcaagtgattctcttgccttagcctccatcatagctgggattacaagtgcccgccaccacaccgggctaattttggtatttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59933626 158 +  64156825 acagagtcttgctctgttgctcaggctggagtgtagtggtgcgatctcagctcactgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctccctagtagccaggactacaggtgcccgccaccacactaggctaatttttgtatttt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47071066 158 +  51301725 acagagtcttgctctgttgcccaggctggagtgtagtggtgtgatctcagctcattgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctccctagtagccaggactacaggtgcccgccaccacactaggctaatttttgtatttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776344 158 +  50890351 acagagtcttgctctgccgcccaggctggagtatagtggtgtgatcccagctcactgcaacttctgcctcccaggttcaagcgattcttctgcctcagcctccctagtagccgggactacagatgcccgccaccacaccagactaatttttgtatttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45344248 158 +  49145316 aaggagtctcattctgtctcccaggctagaatgcaatggctcgatcttggctcactgcaacctctgcctcctgggttcaagtgattttcctgcctcaaccccccaagtagctgggactacaggtgcctgccaccacacccagctaatttttgtatttt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3615533   4 + 145441459 I
e canFam3.chr1               19576268   0 - 122678785 C
e macFas5.chr19              54942282   1 +  59248254 I

a score=220726.000000
s hg38.chr19_GL949751v2_alt     74395 113 +   1002683 tagtagaga-ggggtttcgccatgttggtcaggctggtcttgaactcctgtcc-tcaggtgatccacccgcc-tcgg-cctcccaaagtgctgggcctcggctcccacaggcatgag
s panTro4.chr19              59007866 105 +  63644993 tagtagaga-ggggttttgccatgttggtcaggctggtcttgaactcctgtcc-tcaggtgacccgcccgcc-tcgg-cctcccaaagtgctgggatt--------acaggcatgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885870 106 +  60714840 tagtagagatggggtttcgccatgttggtcaggctggtcttgaactcctgtcc-tcaggtgatccgcctgcc-tctg-cctcccaaagtgctgggatt--------acaggcatgag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102647834 106 - 106955855 tagtagagatggggtttcgccatgttggtcaggctgatcttgaaatcctgacc-tcaggtgatccgcccgcc-tcgg-cctcccaaagtgccgggatt--------acaggcgtgag
i nomLeu3.chr10             C 0 M 2603
s rheMac3.chr19              59933784 106 +  64156825 tagtagagacagagttttgccatgttggtcaggctgttcttgaactcctgtcc-tcaggtaatccgcccgcc-tcag-cctcccaaagtgctgggatt--------acaggtgtgag
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47071224 106 +  51301725 tagtagagacagggtttcgccatgttggtcaggctgttcttgaactcctgtcc-tcaggtgatccgcccgcc-tcag-cctcccaaagtgctgggatt--------acaggcgtgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776502 106 +  50890351 tagtagagacagggtttcgccatgttggtcaggctggtcttgaactcctgtcc-tcaggtgatctgcccgcc-tcag-cctcccaaagtgctgggatt--------acaggcgtgag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45344406 108 +  49145316 tagtagagccagggtttcgccatattggtcaggctggtcttgaactcctggcctttgggtgatccaccccccttcag-cctcccaaagtgcagggatt--------acaggcgtgag
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19576268  58 - 122678785 ----TGACACAGAG----GCCCTGTAGATCA---------------------C-GGAGGGG----------C-TAAGTCTTTTCAAAGTTCTAGGCTT--------C----------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3615533   4 + 145441459 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=30122.000000
s hg38.chr19_GL949751v2_alt     74508 21 +   1002683 ccgctgcgcccAACAGCGAGT
s panTro4.chr19              59007971 21 +  63644993 ccactgtgcccgacAGCGAGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885976 21 +  60714840 ccactgtgcccgacAGCGAGT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59933890 21 +  64156825 ccactgtgcctgacAGCGAGT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47071330 21 +  51301725 ccactgtgcccgacagCGAGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776608 21 +  50890351 ccactgtgcccAACAGCGAGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45344514 20 +  49145316 ccaccCAGCC-GGCAACTAGT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3615533  4 + 145441459 I
e canFam3.chr1               19576326  0 - 122678785 C
e nomLeu3.chr10             102647940 2603 - 106955855 M
e macFas5.chr19              54942282  1 +  59248254 I

a score=1172918.000000
s hg38.chr19_GL949751v2_alt     74529 623 +   1002683 TCTTTTCAAAACCCTTTGTGGCCAGCCCCATCTCATT--GGTAACCCAGGAATCTGAGTTCCCAGCTCCTATCTCCTCTGGGAAATGAGAATCTTATCCCTCCCTCCTCCTGTCTCAGTAGGCAGAAATTTGGACATCCATTGCCCACCTACCGAA-------GAAGTCTGAACGCAGACCCCTCTGGCCTGGGCAACCAAGAGTTCAGGCCCTTGAACTCCACC-TTTCCAGGGAACAATGAT------CGTAGAGTTTCTCCTCTCACGAGTTCAGGAATCTGGGTCCCCATTTCCCTCTTCTCTCAGGAGCTAAGAGCCCTGTTCCCAGCCCCCTTTTCCCAGGGAATCAGGAGTCCTGGCTTCCATCCCCCTCCCATATAAGAATCTGGGAGTCCTCCCTGTCTCCTGACCTCTTCCTGCCTCAAGAACCAGAGATACCTGTCCCCA-------CCTCCTTCCTCTTTCGGGAA-------------TCTGTGTTCTCTTGCTTTAGGACCCAGGGGTCTGGGCCCCAGCCCTG-TTCTTTATTTGAACCTAGAATCCCAAACC---------TGCTGCCTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTGGGTCTCCATTGC--CTCTCTCTCTGCCCCCAACCCCAGCCAGGAACCCAGGGAGAAGAAAGGGGT--
s panTro4.chr19              59007992 623 +  63644993 TCCTTTCAAAGCCCTTTGTGGCCAGCCCCATCTCATT--GGTAACCCAGGAATCTGAGTTCTCAGCTCCTATCTCCTCTGGGAAATGAGAATCTTATCCCTCCCTCCTCCTGTCTCAGTAGGCAGAAATTTGGACATCCATTGCCCACCTACCGAA-------GAAGTCTGAACGCAGACCCCTCTGGCCTGGGCACCCAAGAGTTCAGGCCCTTGAACTCCACC-TTTCCAGGGAACAATAAT------CGGAGAGTTTCTCCTCTCACGAGTTCAGGAATCTGGGTCCCCATTTCCCTCTTCTCTCAGGAGCTAAGAGCCCTGTTCCCAGCCCCCTTTTCCCAGGGAATCAGGAGTCCTGGCTTCCATCCCCCTCCCATATGGGAATCTGGGAGTCCTCCCTGTCTCCTGCCCTCTTCCTGCCTCAAGAACCAGAGATACCTGTCCCCA-------CCTCCTTCCTCTTTCGGGAA-------------TCTGTGTTCTCTTGCTTTAGGACCCAGGGGTGTGGGCCCCAGTCCTG-TTCTTTATTTGAACCTAGAATCCCAAACC---------TGCTGCCTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTGGGTCTCCATTGC--CTCTCTCTCTGCCCCCAACCCCAGCCAGGAACCCAGGGAAAAGAAAGGGGC--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55885997 631 +  60714840 TCCTTTCAAAGCCCTTTGTGGCCAGCCCCATCTCATT--GGTAGCCCAGGAATCTGAGTCCCCAGCTCCTATCTCCCCTGGGAAATGAAAATCTTATCCCTCCCTCCTCCTGTCTCAGTAGGCAGAAATTCAGACATCCATTGCCCACCTACTGAA-------GAAGTCTGAACGCAGACCCCTCTGGCCTGGGCACCCAAGAGTTCAAGCCCTTGAACTCCACC-TTTCCAGGGAACAATAAT------CG-AGAGTTTCTCCTCTCACGAGTTCAGGAATCTGGGTCCCCATTTCCCTCTTCTCTCAGGAGCTAAGAGCCCTGTTCCCAGCCCCCTTTTCTCAGGGAATCAGGAGTCCTGGCTTCCATCCCCTTCCCACATGACAATCTAGGAGTCCTCCCTGTCTCCTGCCCTCTTCCTGCCTCAAGAGCTAGAGAGACCTGTCCCCACCTCCTTCCTCCTTCCTCTTTCGGGAA-------------TCTGTGTTCTCTTGCTTTAGGACCCAGGGGTCTAGGCCCCAGTCCTG-TTCTTTATTTGAACCTAGAATCCCAAATC---------TGCTGCCTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTGGGTCTCCATTGCCTCTCTCTCTCTGCCCCCAACCCCAGCCAGGAACCCAGGGAGAAGAAAGGGGC--
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59933911 623 +  64156825 TCCTTTCAAAGCCCTTTGTGGCCAGCCCCATCTCACT--GGTAGCCCCAGAATCTGAGTCCCCAGCTCCTCTCTCCTCTGGGAAATGAGAATCTTATCCCTCCCTCCTCCTGTCTCCGTAGACAGAAATTCGGACTTCCATTGCCCACCTACTGAA-------GAAGTCTGAACGCGGACCCCTCTGGCCTGGGCACCCAAGAGTTCAGGCCCTTGAACTCCACC-TTTCCAGGGGGC---------------AGAGCTTCTCCTCTCCTGGGTTCAGGAATCTGGGTCCCCATTTCCGTCTTCTCTCAGGAGCTAAGAGCCCTGTTCCCAGCCCCC--TTCCCAGGGAATCAGGAGTCCTGGCTTCCATCCCCCTCCCATATGAGAATCTAGGCGTCCTCCCTGTCCCCTATCCTCTTCCTGCCTCAAGATCCAGAGATACCTGTCCCCG-------CCTCCTTCCTCTTTCGAGAC-------------TCTGTGTTCCCTTGCTTTAGGACCCAGGGGTCTGGGCCCCAGTCCTG-TTCTTTATTTGAACCTAGAATCCCAAAGCTCCAGCTAGTGCTGCCTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTAGGTCTCCATTCTCTCTCTCTTTCTGCCCCCCACCCCATCCAGGAACCCAGGGAGAAGGAAGGGGC--
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47071351 625 +  51301725 TCCTTTCAAAGCCCTTTGTGGCCAGCCCCATCTCACT--GGTAGCCCCAGAATCTGAGTCCCCAGCTCCTCTCTCCTCTGGGAAATGAGAATcttatccctccctcctcctgtctCCGTAGACAGAAATTCGGACTTCCATTGCCCACCTACTGAA-------GAAGTCTGAACGCGGACCCCTCTGGCCTGGGCACCCAAGAGTTCAGGCCCTTGAACTCCACC-TTTCCAGGGGGC---------------AGAGCTTCtcctctcctgggttcaggaaTCTGGGTCCCCATTTCCGTCTTCTCTCAGGAGCTAAGAGCCCTGTTCCCAGCCCCCTTTTCCCAGGGAATCAAGAGTCCTGGCTTCCATCCCCCTCCCATATGAGAATCTAGGAGTCCTCCCTGTCCCCTATCCTCTTCCTGCTTCAAGATCCAGAGATACCTGTCCCCG-------CCTCCTTCCTCTTTCGGGAA-------------TCTGTGTTCCCTTGCTTTAGGACCCAGGGGTCTGGGCCCTAGTCCTG-TTCTTTATTTGAACCTAGAATCCCAAAGCTCCAGCTAGTGCTGCCTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTGggtctccattctctctctctttctgccccccaccccatcccggaacccagggagaaggaaggggc--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46776629 625 +  50890351 TCCTTTCAAAGCCCTTTGTGGCCAGCCCCATCTCACT--GGTAGCCCCAGAATCTGAGTCCTCAGCTTCTCTCTCCTCTGGGAAATGAGAATCTTATCCCTCCCTCCTCTTGTCTCAGTAGACAGAAATTCGGACTTCCATTGCCCACCTACTGAA-------GAAGTCTGAACGCAGACCCCTCTGGCCTGGGCACCCAAGAGTTCAGGCCCTTGAACTCCACC-TTTCCAGGGGGC---------------AGAGCTTCTCCTCTCCTGGGTTCAGGAATCTGGGTCCCCATTTCCCTCTTCTTTCAGGAGCTAAAAGCCCTGTTCCCAGCCCCCTTTTCCCAGGGAATCGGGAGTCCTGGCTTCCATCCCCCTCCCATATGAGAATCTAGGAGTCCTCCCTGTCCCCTATCCTCTTCCTGCCTCAAGATCCAGAGATATCTGTCCCCA-------CCTCCTTCCTCTTTCGGGAA-------------TCTGTGTTCCCTTGCTTTAGGACCCAGGGGTCTGGACCCCAGTCCTG-TTCTTTATTTGAACCTAGAATCCCAAAGCTCCAGCTAGTGCTGCCTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTGGGTCTCCATTCTCTCTCTCTTTCTGCCCCCCATCCCATCCAGGAACCCAGGGAGAAGGAAGGGGC--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45344534 627 +  49145316 TCCTTTCAAAGCCTTTTCTGGCCAGCCCCATCTCATT--GGTATCCCAGGAATCTGAGTCCCCCACTCCTCTCTCCTATGGGAAACAAGAATCTTATACCTCCCTCGTTCTGTCTC---AGGCAGAAATGCAAACTCCCATTACCCAGCAACTGAA-------AACGTCTGAACCCAGACCCCTCTGGCCTGGGAACCCAAGAGTTCAGGCCCTTGAACTCCCCC-TTTTCAGGAGACAGTGAT------CGAAGAGTTTCTCCTCTCCTG-GTTCAGGAATCTGAGTCTCCATTTCCCTGTTCTCTCAGGAGCTACGAGCTCTGTTCCCAGCCCCCTTTCACCAGGGAATTAGGAGTCCTGGCTTCCATCCCCATCCCGTGTGAGATTCTAGAAGTCCTCCCTGTCCGCTACCCTCTTCCTGCCTCAGGATCCAGAGAGACCTGTCCCCA-------TCTCCTTCCTCTTACGGGAA-------------TCTGTCTTCTCTTACTTTAGGACCCAGGGGTCTGGGCCCCAGTCCTG-TTCTTTATTTGAACCTAGAATCTCAAGCCCCCAGCTCGTGCTG-CTGG-------------------------------------------------TCCCCCTG--CAGGGTGTCTGGGTCTCCATCGC--CTCTCTCTCTGCCCCCCACCCCAGCCAGGAACTCAGGGAGGAGGAAGGGGC--
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3615537 496 + 145441459 TTTTTACAAAGCCCTTTGTGGACTACCGTCTCCCCTCTAAGGAGCCCTAGACTCTGATT-------------------------ACATGAAGCCTGCCACCGTCTTTTTTAGGATC---AAGCAAAACTCTGTACTTCCATTCCCCA--TACTTAA-------GAAG---------------CTGCTGTCTG---ACCCAAGAGGACAGGCCTCTGTTCCCCACC-TTTCCTAAGAACAATACTTTGCTCCTTGGGGTTTCTCTGCCTTGGGGTTTGAAGGTTTAGATGCCC--------CCTCCCTCCAGCAC-AGTAGACTTG---------CCCATTTACCATGAGAACTGAAT---------------------------ACATTCTTTGACCCCTAGATATCCCTTACTCTCCT-CTGCCTGGAGATCCAGAGAAACCTATGCTCA-------CCCCCGACC-----CAGCAA-------------TCTGTCTTCCCCCG-TTTAGGACTCAGGTATCTGGGTACCAGTCCTGATTCCTTTTTCTAAATTGGA-------------------TGTTGAAT---------------------------------------------------TCCATATG--AACAG--------------------------ATATAGCCCTCAGCCCAGCCAAGGATCCACACACAGGGGAGGGAC--
i mm10.chr7                 I 4 C 0
s canFam3.chr1               19576326 597 - 122678785 TC-------------------CCAGCTTCACCTCACT--GCAAACCCAGGAATCTAAATC------------TTCCTCTGGGAAACAGGAATCTTACCCATATGTCCTCTT---TCAGTAGCCAGAACTGCAGGCTCTTAATCCCTGCCTACTTCATTAGTCTGAAGTCTGGCCCCAGCCCCCTCTTGCCTCTACACCC-AGTGTCCAGACCCCTGGACTCCACCTTTTCCAGGAGACAGTAATCTGAGCCC-ACAGTGTCTCCTCTCTGGGGTCCAGGAGTCTGGGTCCCCAGCTCCCTTCT------------------------------------TTCCCAGAGACCCAGGTCTTCTGGCTTCC-TCTTCTTCCCACATCAGAGTCTAGGATTC------------TACATTTGTCAT---------TCCCAAGAGTTCAGTCCTTA-----------------------GGAAGGAATTCAAGACCTCTGTGTTCTCCTGTGTTAGGACCCAAGGATCTGGGTCCT-GTCCCC-TTAT---TCTGGGTCTAGAATTCTGAACCCTCAGCTAGTGCTGTCTGACCATCCCGCACCTACCCTCAGAGGGACTCAGTAGCCCTCTTCCGTTCCCTCTCCCTGCTCAGAGTGTCCAGGTCCCCAGAGC--CTGTCTCTCTGCACCCAAG-CCAGCCTGGGACCCAGGGAGAAGGGGGAGGGGT
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102647940 2603 - 106955855 M
e macFas5.chr19              54942282   1 +  59248254 I

a score=807362.000000
s hg38.chr19_GL949751v2_alt     75152 271 +   1002683 GACTCACAGAGGGTCAGCAGCTGGAGGATCAGCACCAGGGCCATGGTGGGCAGATACCCGCTAG------AGCTGGAGCCAGGGCTTGGTCGCACCCTCTCCCCTCCCAGGAAATGAGGCAACATCAGAAAACCAGACCCAGATC-----CTCATTTACGGAAGAGAGTATCGAGGTGGGGGCCTGTGGGTGACTGTGTCATAGCCCTATGGCACTGTGGAAAAA-TTAGCAGGGGGTTCAGTCATAACCTGTGGTGTTCATTTATTTAACTCTAGAAACAAA
s panTro4.chr19              59008615 258 +  63644993 GACTCACAGAGGGTCAGCAGCTGGAGGATCAGCACCAGGGCCATGGTGGGCAGACACCCGCTAG------AGCTGGAGCCAGGGCTTGGTCGCACCCTCTCCCCTCCCAGGAAATGAGGCAACATCAGAAAACCAGACCCAGATC-----CTCGTTTACGGAAGAGAGTATCGAGGTGGGGGCCTGTGGGTGACTGTGTCA-------------CTGTGGAAAAA-TTAGCAGGGGGTTCAGTCATAACCTGTGGTGTTCATTAATTTAACTCTAGAAACAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55886628 277 +  60714840 GACTCACAGAGGGTCAGCAGCTGGAGGATCAGTACCAGGGCCATGGTGGGCAAATGTTCGCTGG------AGCTGGAGCCAGGGCTTGGTCGCACCCTCTCCCCTCCCAGGAAATGAGGCAACATCAGAAAGCCAGACCCAGACCAGATACTCGTTTAGGGAAGAGAGTATCGAGGTGGGGGCCTGTGGGTGACTGTGTCATAGTCCTGTGGCACTGTGGAAAAAGTTAGCAGGGGGGTCAGTCATAACCTGTGGTGTTCATTAATTTAACTCTAGAAACAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102650544 272 - 106955855 GGCTCACAGAGGGTCAGCAGCTGGAGGATCAGCATCAAGGCCATGGTGGGCAGCTATCCGCTGG------AGCTGGAGCCAGGGCTTGGTCGCACCCTCTTCCCTCCCAGGAAATGAGGCAACATCAGAAAGCCAGACCCAGATA-----CTCGTTTAGGGAAGTGAGTATCGAGGTGGGGGCCTGTGGGTGACTGTGTCATAGCCCTATGGCCCTGTGGAAAAAGTTAGCAGGGGGGTCAGTCATAACCTGTGGTGTTCATTCATTTAACTCTAGAAACAAA
i nomLeu3.chr10             M 2603 C 0
s rheMac3.chr19              59934534 272 +  64156825 AGCTCACAGAGGGTCAGCAGCTGGAGGATCAGCACCAGGGCCATGGTAGGCAGATATCTGCTGG------AGCTGGAATCAGGGCTTGGTTGCATCCTCTCCCCTCCCAGGAAATGAGGAAACATCAGAAAGCCAGACCCAGATC-----GTCGTTTAGGGAAGAGAGGATCGAGGTGGGGGCCTGTGGGTGACTGTGTCATAGCCCTATAGCGCTGTGGAAAAGGTTAGCAGGGGGGTCAGTCATAACCTGTGGTGTTCATTAATTTAACTCTAGAAACAAA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47071976 272 +  51301725 GGCTCACAGAGGGTCAGCAGCTGGAGGATCAGCACCAGGGCCATGGTAGGCAGATATCTGCTGG------AGCTGGAGTCAGGGCTTGGTTgcatcctctcccctcccaggaaatgaggaaacatcagaaagCCAGACCCAGATG-----GTCGTTTAGGGAAGAGGGGATCGAGGTGGGGGCCTGTGGGTGACTGTGTCATAGCCCTATAGCGCTGTGGAAAAGGTTAGCAGGGGGGTCAGTCATAACCTGTGGTGTTCATTAATTTAACTCTAGAAACAAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46777254 272 +  50890351 GGCTCACAGAGGGTCAGCAGCTGGAGGATCAGCACCAGGGCCATGGTAGGCAGATATCTGCTGG------AGCTGGAATCAGGGCTTGGTTGCATCCTCTCCCCTCCCAGGAAATGAGGAAACATCAGAAAGCCAGACCCAGATC-----GTTGTTTAGGGAAGAGAGGATCGAGGTGGGGGCCTGTGGGTGACTGTGTCATAGCCCTATAGTGCTGTGGAAAAGGTTAGCAGGGGGGTCAGTCATAACCTGTGGTGTTCATTAATTTAACTCTAGAAACAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45345161 262 +  49145316 AGCTCACAGACGGTCAGCAGCTGGAGGATCAGCACCAGGGCCATGGTGGGCAGATATCC-CTGC------AGCTGCTGCCAGAGCTTGGCTG-------TTCCCTCCCAGGAAATGAGGCAACATCAGAAAGCCAGACCCAGAGC-----CCAGTTTAGGAAAGAGA--AGCGAGGTGGGGGCCTATGGGTCACTGTGTCATAGCCCCATGGCACCGTGGAAAAAGTTAGCAGGGGGGTCAGTCATAACCTGTGGTGTTCATTAATTTAGCTCTAGAAACAAA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3616033 255 + 145441459 AGCTCACAGAGAGTCGACAGCTGGAGTATCAGCGACAGGACCATGGTGGGCA-CTCTCCG-TGG------AGCTGAGGAAAAGG-TTGACCCTGCCTTTTTCACTCTGAGGAAATGAAGCAACACCAGAAAGCCATG-TGAGAGT-----CCTGTTTAGGGAACAGAGGAGTCAGGTGGAGGCTCCTGGGTAACTGTGTCATAGTTTCATTG--TCTTGGAAAAAGTTGCAAGATGGAACAGTCATAGCCTCTGGTGTTCTTTAATTTAACT-----------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19576923 269 - 122678785 GGCTCACAGAGGATCAGCAGCTCAAGGATCAGCGCCAGAGCCATGGTGGTCAGATCTTGGCTGGAGCAGAAGCAGGAGCCAGGGCTCAGCCGTGCCCTCTCACTTCTCAGGAAAT---GCAATACCAGAAAGCCAGA------GC-----TCTGTTTAAGGAAGGGAGGAGGGAAGTGGGGGCCTCTGGGTGACTGTGTCACAGCCCCATGGTGCTGTGGAAAAGCCTGGGAGATGGGGCAGTCATAACCAGTTGTGTTCACTAATTAAACTTAAAAAAAAAA
i canFam3.chr1              C 0 I 167
e macFas5.chr19              54942282   1 +  59248254 I

a score=142386.000000
s hg38.chr19_GL949751v2_alt     75423 75 +   1002683 TActagtcaggaggtggaggcaggagga-----tcgcttgagcccaagagt-----tcaagagcagcctgggcaacagagcgaga
s panTro4.chr19              59008873 75 +  63644993 TACTAGtcgggaggtggaggcaggagga-----tcgcttgagcccaagagt-----tcaagagcagcctgggcaacacagcgaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55886905 75 +  60714840 TActagtcggaaggtggaggcaggagga-----tcgcttgagcccaagagt-----tcaaaagcagcctgggcaacacagcgaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102650816 75 - 106955855 TACTAGtcgggaggtggaggcaggagga-----tcgcttgagcccaagagt-----tcaagagcagcctgggcaacacagcaaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59934806 67 +  64156825 TActagtcgggaggcggaggcaggagta-----tcgcttgagcccaagagt-----tcaagagcaggttgg--------gcggga
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47072248 67 +  51301725 TACTagtcaggaggcggaggcaggagga-----tcgcttgagcccaagagt-----tcaagagcagcttgg--------gcgaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46777526 67 +  50890351 TActagtcgggaggcggaggcaggagga-----tcgcttgagccccagagt-----tcaagagcagcttgg--------gcgaga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45345423 60 +  49145316 TACTCAttgggaggtggagatgggagga-----tcgcttgagtccaggagt-----tcaa---------------catggcgaga
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3616288 82 + 145441459 TAAAAGTTGG--GGAGGAGGGCTGAGGACGTTGTCGC-TAAGTAGAAGACCACTTGCCCAGAGTAGCCTCAGCACTGaggagaga
i mm10.chr7                 C 0 I 915
e canFam3.chr1               19577192 167 - 122678785 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=23730.000000
s hg38.chr19_GL949751v2_alt     75498 10 +   1002683 ccctgtct-aa
s panTro4.chr19              59008948 10 +  63644993 ccctgtct-aa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55886980 10 +  60714840 ccctgtct-aa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102650891 11 - 106955855 ccctgtctaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59934873 10 +  64156825 ccctgtct-aa
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47072315 10 +  51301725 ccctgtct-aa
i papAnu2.chr19             C 0 M 348
s chlSab2.chr6               46777593 10 +  50890351 ccctgtct-aa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45345483 10 +  49145316 ccctgtct-aa
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=151803.000000
s hg38.chr19_GL949751v2_alt     75508 101 +   1002683 aaaataaataaat----tgtgccactgcactccagcctgggtgatagagtgagaccatgtctttaaaT----atagatagacagatagaaagataTCTGTC-----TGTTTTAA
s panTro4.chr19              59008958 105 +  63644993 aaaataaataaataaattgtgccactgcactccagcctgggtgatagagtgagaccatgtctttaaaT----ATAGATAGACAGACAGACAGAAAGATATC-----TGTTTTAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55886990 110 +  60714840 aaaataaataaataaattgtgccactgcactccagcctgggtgatagagtgagaccatgtctttaaaT----ATAGATAGACAGACAGATAGAAAGATATCTGTCTTGTTTTAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102650902 106 - 106955855 aaaataaataaataaattgtgccactgcactctagcctgggtgatagagtgagaccatgtctttaaaT----ATAGATAGACAGACAGAAAGATATCTGTC----TTGTTTTAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59934883  99 +  64156825 aaaataaataaat----tttgccaccacactccagcctgggtgatagagtgagaccatgtcttcaaaT----ACAGACAGACAGACAGAAAGATATCTGTT-------TTTTAA
i rheMac3.chr19             C 0 I 31
s chlSab2.chr6               46777603 103 +  50890351 aaaataaataaat----tgtgccaccacactccagcctgggtgatagagtgagaccatgtcttcaaatacagacagacagacagacagaaagaTATCTGTT-------TTTTAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45345493  99 +  49145316 --aaaaaaaaaaT----TGTGCAACATCGCTCCAGCCTGAGTGATAGAGTGAGACCATGTCTTTAAAT----ATAGACAGACAGACAGAAAGATATCTGTC-----TGTTTTAA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e papAnu2.chr19              47072325 348 +  51301725 M
e macFas5.chr19              54942282   1 +  59248254 I

a score=189487.000000
s hg38.chr19_GL949751v2_alt     75609 101 +   1002683 AAATAAGAACCTATTATGTGCCAGACTCTTGCTGTCATTGATTGACAGATAGataaaaa-------tttgcacctattatgtgccaggcccttgctgTGATTGAAaga
s panTro4.chr19              59009063 101 +  63644993 AAATAAGAACCTATTATGTGCCAGACTCTTGCTGtcattgattgacagatagataaaaa-------ttcgcacctattatgtgccaggcccttgctgTGATTGAAaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887100 101 +  60714840 AAATAAGAACCTATTATGTGCCAGACTCTTGCTGTGATTGATTGACAGATAGataaaaa-------ttagcacctattatgtgccaggcccttgctgTGATTGAAaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102651008 101 - 106955855 AAATAAGAACCGAATATGTGCCAGACTCTTGCTGTGATTGATTGACAGATAGataaaaa-------ttagcacctattatgtgccaggcccttgctgTgatagataga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59935013  97 +  64156825 AAAAAAGAACCTATTATGTGCCAGACTCTTGCTG----TGATTGATTGATAGAAAAAAA-------TTAGCACCTATTATGTGCCAGACCCTTGCTGTGATTGAAAGA
i rheMac3.chr19             I 31 I 249
s papAnu2.chr19              47072673  97 +  51301725 aaattagcatctattatgtgccaggcctttgcta----tgatagatagatagataaaaa-------ttaGCACCTGTTAAGTGCCAGGCCCTTGCtgtgattgattga
i papAnu2.chr19             M 348 C 0
s chlSab2.chr6               46777706  99 +  50890351 -----AAAACCTATTATGTGCCAGACCCTTGCTG----TGATTGAAAGAAAAAAAGAaaaaaaaatttagcatctattatgtgccaggcccttgctgTgataaataga
i chlSab2.chr6              C 0 I 7
s calJac3.chr22              45345592  93 +  49145316 AAATAAGAACCTATAATATGCCAGACTATTGCTG----TGattgattgat----aaaaa-------ttagcacctatcatgtgccaggcccttgctgTgattgataga
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=-595.000000
s hg38.chr19_GL949751v2_alt     75710 34 +   1002683 tagatagatggatg--------------------------------gatggatagatagatagata
s panTro4.chr19              59009164 34 +  63644993 tagatagatggata--------------------------------gatagatagatagatagata
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887201 18 +  60714840 ta------------------------------------------------gatagatagatagata
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102651109 22 - 106955855 tagata--------------------------------------------gataggtagatagata
i nomLeu3.chr10             C 0 I 36
s papAnu2.chr19              47072770  6 +  51301725 ------------------------------------------------------------tagata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46777812 66 +  50890351 tagatagataAAAATTagcatctattatgtgccaggcccttgctgTGATAGATAGACAGATAGATA
i chlSab2.chr6              I 7 I 36
s calJac3.chr22              45345685  5 +  49145316 ------------------------------------------------------------tagat-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59935110 249 +  64156825 I

a score=346188.000000
s hg38.chr19_GL949751v2_alt     75744 245 +   1002683 gatagatagatagataAAAATTAGCACCTGTTAAGTGCCAGGCCCTTGCTGTGATTGATTGATGGAT------------A--------------------------------------------GATAAAAATTAACACCAA-TTATGTGCCAGGCCCTTGCTGtgattaattgatcgattgatagattggttgaCAG--AGAAAAATTAGCACCTATTATGTGCCAGGCTCTTGGTGTGATACTGTG----------------Ttagatagatagatagatagatagatagatagatagatagat-aAAAATTAGCCCCT
s panTro4.chr19              59009198 237 +  63644993 gatagatagatagataAAAATTAGCACCTGTTAAGTGCCAGGCCCTTGCTGTGATTGATTGATGGAT------------A--------------------------------------------GATTAAAATTAACACCAA-TTATGTTCCAGGCCCTTGCTGtgattaattgatcgattgatagattggttgaCAG--AGAAAAATTagcacctattatgtgccaggctcttgctgTGATACTGTg------------------------atagatagatagatagatagatagatagatagat-aAAAATTAGCCCCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887219 250 +  60714840 gatagatagatagataAAAATTagcacctattaagtgccaggcccttgctgTGATTGATTGATGGAT------------A--------------------------------------------GATAAAAATTAACACCAA------------GCCCTTGCTGTGATTAATTGATCAATTGATAGATTGGTTGACAG--ataaaaattagcacctattatgtgccaggctcttgctgtgatactgTgattgattgatagatagatagatagatagatagatagatagatagatagatagatagat-aAAAATTAGCACCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102651167 265 - 106955855 GATAGATAGATAGATAAAAATTAGCACCTATTAAGTGCCAGGCCCTTGCTGTGATTGATTGATAGAT------------AAGAATTAGCACCTATTAAGTGTCAGACCCTTGCTGTGATTGATGGATAGATAAAAACACCAA-TTATGTGCCAGTCCCTTGCTGTAattaattgatcgattgatagattggttgaCAG--ataaaaattagcacctattatgtgccaggctcttgctgTGATACTGTG----------------------------------------ATTGATTGATTGATTGAT-AAAAAGTAGCACCT
i nomLeu3.chr10             I 36 C 0
s rheMac3.chr19              59935359 212 +  64156825 GATAGATAGATAGATAAAAATTAGCACCTGTTAAGTGCCAGGCCCTTG-TGTGATTGATTGAT----------------A--------------------------------------------GATAAAAATTAACACCAA-TTACGTGCCAGGCCCTTGCTGTGATTAATTGATC----GATAGATTGGTTGACAG--ataaaaattagcacctattatgtgccaggctcttgctgTGATACTGtg----------------------------------------attgattgattgattgat-tAAAATTAGCACCT
i rheMac3.chr19             I 249 C 0
s papAnu2.chr19              47072776 144 +  51301725 -----------------aaATTAACACCAATTACGTGCCAGGCCCTTGCTGTGATTAATTGATCGATAGATTGGTTGACA--------------------------------------------GATAAAAAttagcaccta-ttatgtgccaggctcttGCTGTGATActgtgatt------------------------------------------------------------------------------------------------------------------gattgattgattgat-taaaaTTAGCACCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46777914 213 +  50890351 GATAGATAGATAGATACAAATTAGCACCTGTTAAGTGCCAGGCCCTTGCTGTGATTGATTGAT----------------A--------------------------------------------GATAAAAATTAACACCAA-TTACGTGCCAGGCCCTTGCTGTGATTAATTGATC----GATAGATTGGTTGACAG--ATAAAAATTagcacctattatgtgccaggctcttgctgTGATACTGTG----------------------------------------ATTGATTGattgattgat-taaaattagcacct
i chlSab2.chr6              I 36 C 0
s calJac3.chr22              45345690 231 +  49145316 gatagataaatagataAAAATTAGTGCCTATTAAGTGCCAGGCCCTTGCTGTGATTGATTGAC----------------A--------------------------------------------GATAAAAATGAGCACCAATTTATGTGGCAGGC-CTTGTTGTGATTGATTGATCGATTGATAAAATGATTGACAGGCATAAAAATTAGCACCTATTATGTACCAGGCCCTTGCTGTGATACTGTG----------------------------ATAGATAGATGGAT-GATTGATTGATAGATAAAAAATTCGCACCT
i calJac3.chr22             C 0 I 71
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=467916.000000
s hg38.chr19_GL949751v2_alt     75989 279 +   1002683 CTAggccgggcgcggttgttcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgagatcgggaagttcgagaccagcctgaccaacatggagaaacccccgtctctcctaaaaa-agaaaaattagccggctgtggaggcgcgcgcctgtaatcccagctattcaggaggctgaggcaggagaatcgcttgaactcgggagtcggaggttgctgtgagccgagatcgcgccattgcactccagcctgggcgacagagctagact
s panTro4.chr19              59009435 280 +  63644993 CTAggccgggcgcggttgctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcgggaagttcgagaccagcctgaccaacatggagaaacccccgtctctcctaaaaacagaaaaattagtcgggtgtggaggcgcgcgcctgtaatcccagctattcaggaggctgaggcaggagaatcgcttgaactcgggagtcagaggttgctgtgagccgagatcgcgccattgcacttcagcctgggcgacagagctagact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887469 279 +  60714840 ATAggctgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgaggtcgggaagttccagaccagcctgaccaacgtggagaaa-ccccgtctctactaaacatagaaaaattagccgggtgtggaggcgcgcacctgtaatcccagcgattcaggaggctgaggcaggagaatcgcttgaacccgggagttggaggttgctgtaagccgagataacaccattgcactccagcctgggggacagagctagact
i ponAbe2.chr19             C 0 I 25
s nomLeu3.chr10             102651432 279 - 106955855 ATAggccgggcacggtggctcacgcctgtaatcctagcactttgggaggccgaggggggcggatcacctgaggtcgggaagttcgagaccagcctgaccaacatggagaaa-ccccatctctactaaaaatagaaaaattagctgggtgtggaggcacgcgcctgtaatcccagctattcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgctgtgagccgagatcgcgccattgcactccagcctgggcaacagagctagact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59935571 269 +  64156825 ATAggccgggctcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgagggcgggaagttggagaccagcctgaccaacatggagaaa-ccccgtctttactaaaaatagaaaaattagcctggtgtgtaggcgcgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaaccccggaggcggaggttgctgtgagccgagatcgtgccagtgcactccagcctgggggact----------
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47072920 267 +  51301725 ATAGgccggg--cggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgaggtcgggaagttggagaccagcctgaccaacatggagaaa-ccccgtctttactaaaaatagaaaaattagcctggtgtggaggcgcgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaaccccggaggcggaggttgctgtgagccgagatcgcgccagtgcactccagcctgggcgact----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778127 269 +  50890351 ataggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggattacctgaggtagggaagttggagactagcctgaccaacatggagaaa-ccccgtctttactaaaaatagaaaaattagcctggtgtggaggcgcgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaaccccggaggcggaggttgcagtgagccgagatcgcgccagtgcactccagcctgggcgact----------
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e calJac3.chr22              45345921  71 +  49145316 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=25798.000000
s hg38.chr19_GL949751v2_alt     76268 21 +   1002683 caatctcagaagaaaaaaaaa
s panTro4.chr19              59009715 21 +  63644993 caatctcagaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102651711 21 - 106955855 cagtctcaaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 M 520
s rheMac3.chr19              59935840 21 +  64156825 cagtctcaggaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073187 21 +  51301725 cagtctcagaaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778396 21 +  50890351 cagtctcagaaagaaaaaaaa
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e calJac3.chr22              45345921 71 +  49145316 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=93320.000000
s hg38.chr19_GL949751v2_alt     76289 112 +   1002683 aa-----aaTTAGAACCTATTACGTGCCAGACCCTCGCtgtgccatgttggcaggcacagagggaactcagactccgttactgctctcaagcagcagctaccagtccgactgaaaga
s panTro4.chr19              59009736 117 +  63644993 aagaaaaaaTTAGCACCTATTACGTGCCAGACCCTCGCtgtgccatgttggcaggcacagagggaactcagactccgttactgctctcaagcagcagctaccagtccgactgaaaga
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59935861 112 +  64156825 -----aaGATTagcacctattacgtggcagaccctcgctgtgcgatgttggcaggcacagagggcactcagactccattactgctctcaagcagctgctaccagtccgactgacaga
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073208 111 +  51301725 -----aagattagcaccTATTACGTGGCAGACCCTCGCTGTGCGATGTTGGCAGGCACAGAGGGAACTCAGACT-CGTTACTGCTCTCAAGCAGCTGCTACCAGTCCGACTGACAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778417 112 +  50890351 -----aagattaggacctattacgtggcagaccctcgctgtgcgatgttggcaggcacagagggaactcagactccgttactgctctcaagcagctgctaccagtccgactgacaga
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e calJac3.chr22              45345921  71 +  49145316 I
e nomLeu3.chr10             102651732 520 - 106955855 M
e macFas5.chr19              54942282   1 +  59248254 I

a score=4927.000000
s hg38.chr19_GL949751v2_alt     76401 57 +   1002683 ccaagaccaggtcagtttcctttttttttgagacggagtctcgctctgtcgcccagg
s panTro4.chr19              59009853 56 +  63644993 ccaagaccaggtcagtttc-tttttttttgagacggagtctcgctctgtcgcccagg
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e calJac3.chr22              45345921 71 +  49145316 I
e nomLeu3.chr10             102651732 520 - 106955855 M
e chlSab2.chr6               46778529  0 +  50890351 C
e papAnu2.chr19              47073319  0 +  51301725 C
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59935973  0 +  64156825 C

a score=68100.000000
s hg38.chr19_GL949751v2_alt     76458 252 +   1002683 ctggagtgcagtggtgtgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgccttagcctccccagtagctgggactacgggcgcccaccaccacgcccggctaatttgtgttgtatttttaagtagagacagggtttcaccatgttagccaggatggtctagatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgccc
s panTro4.chr19              59009909 252 +  63644993 ctggagtgcagtggtgtgatctctgctcactgcaagctccgcctccggggttcacgccattctcctgccttagcctccccagtagctgggactacgggcgcccaccaccacgcccggctaatttgtgttgtatttttaagtagagacagggtttcaccatgttagccaggatggtctagatctcctgatctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652253 252 - 106955855 ctggagtgcagtggtgtgatctctgctcactgcaagctccgccttccgggttcacgccattctcctgcctcagcctccccagtagctgggactacagtcgcccaccaccactcccggctaatttgtgttgtatttgtaagtacagacagggtttcaccatgttagccaggatggtctagatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacggctccc
i nomLeu3.chr10             M 520 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e calJac3.chr22              45345921  71 +  49145316 I
e chlSab2.chr6               46778529   0 +  50890351 C
e papAnu2.chr19              47073319   0 +  51301725 C
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59935973   0 +  64156825 C

a score=807.000000
s hg38.chr19_GL949751v2_alt     76710 2 +   1002683 gg
s panTro4.chr19              59010161 2 +  63644993 gg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652505 2 - 106955855 gg
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45345992 2 +  49145316 ga
i calJac3.chr22             I 71 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e chlSab2.chr6               46778529 0 +  50890351 C
e papAnu2.chr19              47073319 0 +  51301725 C
e macFas5.chr19              54942282 1 +  59248254 I
e rheMac3.chr19              59935973 0 +  64156825 C

a score=57113.000000
s hg38.chr19_GL949751v2_alt     76712 31 +   1002683 cccagaccaggtcagtttcttaagtgatctg
s panTro4.chr19              59010163 31 +  63644993 cccagaccagatcagtttcttaagtgatctg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652507 31 - 106955855 ccCAGACCAGGTCAGTTTCttaagtgatctg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59935973 31 +  64156825 cccagaccaggtcagtttcttcagtgatctg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073319 31 +  51301725 CCCAGACCAGGTCAGTTTCTTAAGTGATCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778529 31 +  50890351 cccagaccaggtcagtttcttaagtgatctg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45345994 31 +  49145316 ctcagaccaggtcagtttgttcagtgatctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e canFam3.chr1               19577192 167 - 122678785 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=563141.000000
s hg38.chr19_GL949751v2_alt     76743 265 +   1002683 agctataatggcggtaaca--gagcactgtgagagcccgcagaaagctcctaacccatctgggatgagacctagcgcttccaggacgagccgatgttgagctgaga--cctcgaaggacaggttagtcattcaccttctcccgggctcagtttcttcgtctgtaaaatgggCTTTCATACATAAACTATAAAATGGGGACTATTTTGTTCCGCCTTAGGTGGGTCGCAGCAGGAGGACTAG-----TCACTCCGGAGCGACTTCTAGGCTGAGA
s panTro4.chr19              59010194 265 +  63644993 agctataatggcggtaaca--gagcactgtgagagcccgcagaaagctcctaacccatctgggatgagacctagcgcttccaggacgagccgatgttgagctgaga--cctcgaaggacaggttagtcattcaccttctcccgggctcagtttcttcgtctgtaaaatgggCTTTCATACATAAACTATAAAATGGGGACTATTTTGTTCCGCCTTAGGTGGGTCGCAGCAGGAGGACTAG-----TCACTCCGGAGCGACTTCTAGGCTGAGA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652538 261 - 106955855 agctataatggcggtaaca--gggcact----tagcccgcagaaagctcctaacccatctgggatgagacctagcgcttccaggacgagctgatgttgagctgaga--cctcgaaggacaggttagtcattcaccttctcccaggctcagtttcttcgtctgtaaaatgggCTTTCATACATAAACTATAAAATGAGGACTATTTTGTTCTGCCTTAGGTGGGTCGCAGCAGGAGGACTAG-----TCACTCCGGAGCGACTTCTAGGCTGAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59936004 264 +  64156825 agctacactggcggtaaca--gggcactgtgagagcccgcagaaagctcctaacccatctgggatgagacctagcgcttccaggacgagctgatgttgagctgaga--cctcgaaggaAAggttagtcattcaccttctcccgggctcagtttcttcatctgtaaaatgggCTTTCATACATAAACTATAAAATGAGGATTATTTTGTTCCGCCTTAGGT-GGTCTCAGTAGGAGGACTAG-----TCACCCCGGAGCGACTTCTAGGCAGAGA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073350 264 +  51301725 AGCTATAATGGCGGTAACA--GGGCACTGTGAGAGCCCGCAGAAAGCTCCTAACCCATCTGGGATGAGACCTAGCGCTTCCAGGACGAGCTGATGTTGAGCTGAGA--CCTCGAAGGAAAGGTTAGTCATTCACCTTCTCCcgggctcagtttcttcatctgtaaaatgggctttcATACATAAACTATAAAATGAGGACTATTTTGTTCCGCCTTAGGT-GGTCTCAGTAGGAGGACTAG-----TCACCCCGGAGCGACTTCTAGGCAGAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778560 264 +  50890351 agctatactggcggtaaca--gggcactgtgagagcccgcagaaagctcctaacccatctgggatgagacctagcgcttccaggacgagctgatgttgagctgaga--cctcaaaggaAAggttagtcattcaccttctcccgggctcagtttcttcatctgtaaaatgggCTTTTATACATAAACTATAAAATGAGGACTATTTTGTTCCTCCTTAGGT-GGTCTCAGTAGGAGGTCTAG-----TCACCGCAGAACGACTTCTAGGCAGAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45346025 264 +  49145316 agccatactggcggttaca--gggcactgtgagagcccacagaaggctcctaagccatctgcgatgagacctagcgcttccaggatgagctgatcttgagctgagaggcctcaaagggcaggttaatcattcaccttctcccgggctcagtttcttcatctgtaaaatgggCTTTCATGCATAAACTATAAAATGGGAACTATTTTGTTCTGCCTTAAGTGGATCGCAGCAGGA---CCAG-----TCACTCCGGACCGACTTCAAGGCTGAGA
i calJac3.chr22             C 0 I 386
s canFam3.chr1               19577359 271 - 122678785 agctaca-tggaggtcacatgtggcactgagagagtccacagaaggcccctaaccctcctgggatgagacttaaagcttccaggatgaactgattttgagctgaga--cctcaaaggatagctaagttatctgtcctctcccagcctccgcttcttcatctgtgaaatgggCTTTCATGAGTCAACTCTAAAATGAGGACTATTGCATTCCGCCTTGGATGAGTCGCAGCTGCAGGACTGGGAGTACTCCTCAGGCACGACTCCTAGGCGGAGA
i canFam3.chr1              I 167 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=750.000000
s hg38.chr19_GL949751v2_alt     77008 1 +   1002683 C
s panTro4.chr19              59010459 1 +  63644993 C
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652799 1 - 106955855 C
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59936268 1 +  64156825 C
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073614 1 +  51301725 G
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778824 1 +  50890351 C
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19577630 1 - 122678785 C
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e calJac3.chr22              45346289 386 +  49145316 I
e macFas5.chr19              54942282 1 +  59248254 I

a score=222584.000000
s hg38.chr19_GL949751v2_alt     77009 135 +   1002683 TAAGGAGATTC-CACGCAGGTCCGCAAAGTCAGGCTTGCGCTTGCTCCTGACACCACTTCC-TTTACCTCCACGGCTCC--ATCTTTGTTCTGCGCGAGTGCGCACGCGCAGGCTCCGAAAGCGGGCCGTCGCACAGAG
s panTro4.chr19              59010460 135 +  63644993 TAAGGAGATTC-CACGCAGGTCCGCAAAGTCAGGCTTGCGCTTGCTCCTGACACCACTTCC-TTTACCTCCACGGCTCC--ATCTTTGTTCTGCGCGAGTGCGCACGCGCAGGCTCCGAAAGCGGGCCGTCGCCCAGAG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652800 136 - 106955855 TAAGGAGGTTC-CACGCAGGTCCGCAAAGTCAGGCTTACGCTTGCTCCTGACACTACTTCCTTTTACCTCCACGGCTCC--ATCTTTGTTCTGCGCAAGTGCGCACGCGCAGGCTCCGAAAGCGGAACCTCGCACAGAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59936269 133 +  64156825 TAAGGAGATTC-CACGCAGGTCCGCAAAGTCAGGCTTGCGCTTGCTCTTGGCACTACTTCC-TTTACCTCTGCTGCTCG--ATCTTTGTTCTGCGCTAGTGCGCACGCGCAGACTCCGAAAGCGGTACCTTGCACGG--
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073615 135 +  51301725 TAAGGAGATTC-CACGCAGGTCCGCAAAGTCAGGCTTGCGCTTGCTCCTGGCACTACTTCC-TTTACCTCCGCGGCTCC--ATCTTTGTTCTGCGCTAGTGCGCACGCGCAGAAGCCGAAAGCGGTACCTTGCACAGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778825 135 +  50890351 TAAGGAGATTC-CACGCAGGTCCGCAAAGCCAGGCTTGCGCTTGCTCTTGGTACTACTTCG-TTTACCTCGGCGGCTCC--ATCTTTGTTCTGCGCTAGTGCGCACGCGCAGACTCCGACAGCGGTACCTTGCACAGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45346675 133 +  49145316 TAAGGAGATCC-CACGCAGGTGCGCAAA--CAGGATTGCGCTTGCTCCCGGGACCACGTCC-TTTACCACCGCTGCCTC--ATCTTGGTTCTGCGCTAGTGCGCACGCGCAGACTCTGACAGCAGCGCCTCGCGCAGAG
i calJac3.chr22             I 386 C 0
s canFam3.chr1               19577631 110 - 122678785 -----AGATTTGCACTTAAATTCGCAGTGC--------CGCCTGCT------------TTC-TTTGCC---GCGGATTCTGACAGTTGTCCTGCTCCAGTGCGCGCGTGCGGACTCAGGCTGCGGGGGCTCGAGCGCGG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3616370 915 + 145441459 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=1139465.000000
s hg38.chr19_GL949751v2_alt     77144 537 +   1002683 GGACCACAACTCCCAGAGTGCTCCGCGTCCTTGCTTTCGCCTC------TACTTGTGCTCCAGGGCGCACGCGCAGCCCTGGGAGCGGGTTCTCGCGC----ATAGGGACCACAACTCCCAGGGTGCTCCGCGTCCT------CGCCGCTGTCGCCGCCGCGGAGACAAAGATGGCTGCGAGTAAGTGCAGGTTCCGGTGGCGCACGGGGCTCGGGTAGTTCTGGGAACCTCTGGGCGGTCCTGGGACTGAGGTGCGGCAGGGCAGGGGTGGAAGCGATGGGGTCCGTGCTGGAG-GGGAACGCAGAAGTCACGAGGGGGCTCCTCCAGGGCAGGGGTGGCACGAGAGGGTTAGAGGTCACCGGGGGCAGCTACTTGCAGGGGTGACGCTTCTTG-CCACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGAGCCAGTGCTGGTCGTGTCCTTCGTCGTCGGGGGCCTCGGTGCGTGAGTGCT--CCAGGCGCAAACTTGCATCGTCCA-----CCC-----------CCGTCCCCCTACATCCCTCCATCTTGTACCCC
s panTro4.chr19              59010595 537 +  63644993 GGACCACAACTCCCAGAGTGCTCCGCGTCCTGGCTTTCGCCTC------TACTTCTGCTCCAGGGCGCACGCGCAGCCCGGGGAGCGGGTTCTCGCGC----ACAGGGACCACAACTCCCAGGGTGCTCCGCGTCCT------CGCCGCTGTCGCCGCCGCCGAGACCAAGATGGCTGCGAGTAAGTGCAGGTGCCGGTGGCGCGCGGGGCTCGGGTAGTTCTGGGAACCTCTGGGCGGTCCTGGGACTGAGGTGCGGCAGGGCAGGGGTGGAAGCGATGGGGTCCGTGCTGGAG-GGGGACGCAGAAGTCACGAGGGGGCTCCTCCAGGGCAGGGGTGGCACGAGAGGGTTAGAGGTCACCGGGGGCAGCTACTTGCAGGGGTGACGCTCCTTG-CCACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGAGCCAGTGCTGGTCGTGTCCTTCGTCGTCGGGGGCCTCGGTGCGTGAGTGCT--CCAGGCGCAAACTTGCATCGTCCA-----CAC-----------CCGTCCCCCTACATCCCTCCATCTTGTACCCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102652936 537 - 106955855 GGACCACAACTCCCAGAGTGCTCCGCGTCCTGGCTTTTTCCTC------CACTTCTGCTCCAGGGCGCACGCGCAGCCCGGGGAGCGGTTTCTCGCGC----ATAAGGACCACAACTCCCAGAGTGCTCCGCGTCCT------CGCCGCTGTCGCCGCCGCCGAGACCAAGATGGCTGCGAGTAAGTGCAGGTGCCGGTGGCGCGCGGGGCTCGGGTAGTTTCGGGAACCTCCGGGCGGTCCGGGGACTGAGGTGCGTCAGGGCAGGGGTGGAAGCGATGGGGTCCGTGCTGGAG-GGGGACGCAGAAGTCACGAGGGGGCTCCTCCAGGGCAGGGGTGGCACGAGAGGGTTAGAGGTCACCGGGGGCAGCTACTTGCAGGGGTGACGCTCCTCG-CCACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGAGCCAGTGCTGGTCGTGTCCTTCGTCGTCGGGGGCCTCGGTGCGTGAGTGCT--CTAGGCGCAAACTTGCATCGTCCA-----CCC-----------CCGTCTCCCTCCATCCCTCCATCTTGTACCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59936402 433 +  64156825 --------------------------------------------------------------------------------------------------------AGGGACCACAACTCCCAGAGTGCTCCGCGTCCT------CGCCGGTGTCGCCGCC---GAGACCAAGATGGCTGCGAGTAA------GTGCCGGTGGCGCGCGGGGCTC-GGTGGTACCGGGAACCTCCGGGCGGTCCTGGGACTGAGGTGCGGCAGGGCAGTGGTGGAGGCGATGGGGTCCGTGCTGGAG-GGGGACGCAGAAGTCACGAGGGGGCTCCTCCAGGGCAGGGGTGGCACGAGAGGGTTAGAGGTCACGGGGGGCAGCCACTTGCAGGGGTGACTCTCCTCG-CCACCCCTTCAGGACTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGAGCCAGTGCTGGTCGCGTCCTTTGTCATCGGGGGCCTCGGTGCGTGAGTGCT--TCAGGCGCAAACTTGCATCGTCCA-----CCC-----------CCGTCCCCCTACATCCCTCCATCTTGTACCTC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47073750 527 +  51301725 GGACCACAACTCCCAGAGTGCTCCGCGTCCTGGCTTTCTTGTC------CACTTCTGCTCCAGGGCGCACGCGCAACCCGGGGAGGGGTTTCTCGCGC----GTAGGGACCACAACTCCCAGAGTGCTCCGCGTCCT------CGCAGGTGTCGCCGCC---GAGACCAAGATGGCTGCGAGTAA------GTGCCGGTGGCGCGCGGGGCTC-GGTGGTACCGGGAACCTCCGGGCGGTCCTGGGACTGAGGTGCGGCAGGGCAGTGGTGGAGGCGATGGGGTCCATGCTGGAG-GGGGACGCAGAAGTCACGAGGGGGCTCCTCCAGGGCAGGGGTGGCACGAGAGGGTTAGAGGTCACGGGGGGCAGCCACTTGCAGGGGTGACCCTCCTCG-CCACCCCTTCAGGACTCGGCGCCTTCCTTAAGAATGCCTGGGACAAGGAGCCAGTGCTGGTCGCGTCCTTCGTCATCGGGGGCGTCGGTGCGTGAGTGCT--TCAGGCGCAAACTTGCATCGTCCA-----CCC-----------CCGTCCCCCTACATCCCTCCATCTTGTACCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46778960 533 +  50890351 GGACCACAACTCCCAGAGTGCTCCGCGTCCTGGCTTTCGCCTC------CACTTCTGCTTCAGGGCGCACGCGCAACCCGGGGAGGGGTTTCTCGCGC----ATAGGGACCACAACTCCCAGAGTGCCCCGCGTCCT------CGCCGGTGTCGCCGCC---GAGACCAAGATGGCTGCCAGTAAGTGCAGGTGCCGGTGGCGCGGGGGGCTC-GGTGGTACCGGGAACCTCCGGGCAGTCCTGGGACTGAGGTGCGGCAGGGCAGTGGTGGAGGCGATGGGGTCCGTGCTGGAG-GGGGACGCAGAAGTCACGAGGGGGCTCCTCCAGGGCAGGGGTGGCACGAGAGGATTAGAGGTCACGGGGCGCAGCCACTTGCAGGGGTGACCCTCCTCG-CCACCCCTTCAGGACTCGGCGCCTTCCTCAAGAATGTCTGGGACAAGGAGCCAGTGCTGGTCGCGTCCTTCGTCATCGGGGGCATCGGTGCGTGAGTGCT--TCAGGCGCAAACTTGCATCGTCCA-----CCC-----------CCGTCCCCCTACATCCCTCCATCTTGTACCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45346808 518 +  49145316 GGACCACAACTCCCAGGGTGCTCCGCGTCCTGGCTTTCGCCTC------CACCTCTGCTCCAGGACGCGCGCGCGACCAGGGGAG-----TCTCGCGC------AGAGACCACAACTTCCAGAGTGCTTCGCGTGCT------CTCCGGTGTCGCCGCCGCCGAGACCAAGATGGCCGCAAGTAAGTGCAGGTGTCGGTGGCGCGCGGGGCTC----------GGGAATCTCCAGGCGGTCCTGGGACTAAGGTGTAGTGGGAAAGTGGTGGAGGCGATGTGGTCCGTGCTGGAG-GGGGAGGCAGAAGCTACGAGGGGGCTCCTCCAGGGCA-GGGTGGCACGAGAGGGTTAGAGGTCACTGGGGGCAGCCCCTTGCAGGGGTGACCCTCCTCG-CCACTCCTGCAGGACTCGGCGCCTTCCTCAAGAATGCTTGGGCCAAGGAGCCAGTACTGGTCGTGTCCTTCTTCATCGGGACCCTCGGTGCGTGAGT-CT--CCAGGCGCAAACTTGCATCATCCA-----CCC-----------CTGTCCCTCCACATCGCTCCATCTTGTACCCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3617285 491 + 145441459 GAACTACAACTCCCGAAAGGGTCCACGTCCTCG-------------------------------------------CCCAAGGGGCGGGGCCTCACGCAAGGAGAAGGACCACAACTCCCAGAGAGCTCCGC-TCCT------------TGTCGCCGCC---AAGAACAAGATGGCCGGGAGTAAGTACAGGTTT--GGAGCTCGCGGGGATCAAGTAGTTCCAGGAAACTGTGGGCTGATCCGTGGCTGAGTCTCAGTGGAGCCTTGGGGACCG----GTAATCCGTCCCAGAATAGGGGCGCGGCAGTCACGAGGGTG------CAGAGCAGGGGTGATACGAGAGTGTTAGAGGTCACC----GCAGTAGTCCCCAAGGGTGACTGTCTTC--TCACCTCTCTAGGAATCTCTGCCTTCCTCAAGAATGCCTGGGCGAAGGAGCCGGTGCTGGTGGTGTCCTTCTCTGTCTGGGGCCTCGGTGAGTGCCCCCTTCCCCGGCGCGAAAGTGCATCCTCCA-----CCCGGAAGTCATCAGCATTCCACGGCACAGTTTCATCTCGCATCCC
i mm10.chr7                 I 915 I 1422
s canFam3.chr1               19577741 541 - 122678785 GGACCACAACTCCCAGAGTGCTTCGCGTCCTCGCCACAGCCCCGGGCCGCAGTTCTGTGCCAGTGCGCATGCGCA-CTCAGATTGCGGAGCCTCGGGC----GCGGGAACCACAATTCCCAGAGTGCTCCGGCCGCTTgctgccgccgccgccgccgccgccgAGACCAAGATGGCCGGGAGTAAGTGAGGGCGCCCGCGGCGCGCTGGGTCC-GCTGGTTCCCGGAGCCCC--GGTGGTGCCGGTGCTGGGGCACGGCGGAGCCTCCGTGCAGGCGGTGGGGGCAGGGCCACAG-GGGGGCGCCGAGATCACGAGAGGGCTCCTCCGGGGCGGGGGTGGCGCGAGAGGGTTAGAGGTCACCGGAGGC-GTCCCCTGCAGGAATGACCCTCCTCGCCCTCCCCTCCAGGACTCGCCGCCTTCCTCAAGGATGCCTGGGCCAAAGAGCCGGTGCTGGTCGCGTCCTTCACCATCGGGGGCCTCGGTGCGTGAGCGTG--C--AGCGC-------CCTCACCCAAGGTCCCG-----------TCGCTCCCCACTAGCGCTCTGCCCTGTACCCT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55887748  25 +  60714840 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=74006.000000
s hg38.chr19_GL949751v2_alt     77681 48 +   1002683 TAAAGCCCTATCGCCGCCCTCGGGTCCCCTCTAGTGTGTCTGCACCCC
s panTro4.chr19              59011132 48 +  63644993 TAAAGCCCTATCGCCGCCCTCGGGTCCCCTCTAGTGTGTCTGCACCCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102653473 48 - 106955855 TAAAGCCCTATCGCCGCCCTCGGGTCCCCTCTAGTGTGTCTGCACCCC
i nomLeu3.chr10             C 0 I 1335
s rheMac3.chr19              59936835 48 +  64156825 TAAAGCCCTGTCGCCTCCCTCGGCTCCCCTCCAGTGTGTCTGCACCCC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47074277 48 +  51301725 TAAAGCCCTGTCGCCTCCCTCGGCTCCCCTCCAGTGTGTCTGCACCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46779493 48 +  50890351 TAAAGCCCTGTCGCCTCCCTCGGCTCCCCTCCAGTGTGTCTGCACCCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45347326 23 +  49145316 -AAAGCCCTATCGCCGTCCTCGAG------------------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19578282 35 - 122678785 -----------CAACGTTCTAGGGCCCCCTC--GTGTGTCTGCACCCC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=411484.000000
s hg38.chr19_GL949751v2_alt     77729 356 +   1002683 CACGGCATCCCCTTATCTATCCCCATACCCATTATAACCTCTCCACCATCGCCCCCCGCGT------TCC----TCTCCACCTACCCAATACGCTCTTAACCCCTCTAAATGAGACgttctcaaccctgcttatgcctt---aacacctgagcaccaaaaa-aaagtccagatcctcc---tcctccttttcatctttcctctc------ccccattctgaatt--gagttggcttgggtggaggtgggactggggaatctgtgtcttgtg-aaaatccccgtatgatcccaatgt---gccttgctgattgaaaatctctgCCCTCTGCCCTGGAACTGCCCTACTCACACTTTAATTAGCACCGGAGTTCC-TG--CAGGGATGGG
s panTro4.chr19              59011180 349 +  63644993 CACGGCATCCCCTTATCTATCCCCATACCCATTATAACCTCTCCACCATCGCCCCCCGCGT------TCC----TCTCCACCTACCCAATACGCTCTTAACCCCTCTAAATGAGACgttctcaaccctgcttatgcctt---aacacctgagcaccaaaaa-aaagtccagatcctcc---tcctccttttcatctttcctctc------ccccattctgaatt--gagttggcttgggtggaggtgggactggggaatctgtgtcttgtg-aaaatccccgtatgatcccaatgt---gccttgctgattgaaaat-------ctctgCCCTGGAACTGCGCTACTCACACTTTAATTAGCACCGGAGTTCC-TG--TAGGGATGGG
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59936883 360 +  64156825 CGCGACATCCCCTTGTCTATCCCCATACCCATTATAACGCCTCCACCG---CCCCCCGCAT------TCC----TCTCCCCCTACCCAATACGCTCTTAACCCCTCTAAATGAGACgttctcaatcctgcttatgcattagcaacacctgagcaccaaaaataaagtccagatcctcc---ttctccctttcatctcccctctc------ccacattctgaatt--gagttggtttggttggtggtggggctgggaaatctgtgtcttgtg-aaaatccccctatgatcctaatgtgtcgtcttgctgattgaaaaccTCAGCCCTCTGCCCTGGAACTGTGCTGCTTACACCTTAATTAGCACCGCAGTCCC-TG--CACGGATGGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47074325 349 +  51301725 CACGAC------------ATCCCCATACCCATTATAACGTCCCCACCGc--ccccccGCAT------TCC----TCTCCCCCTACCCAATACGCTCTTAATCCCTCTAAATGAGACGTTCTCAACCCTGCTTATGCGTTAGCAACACCTGAGCACCAAAAATAAAGTCCagatcctcc---tcctccctttcatCTCCCCTCTC------CCACATTCTGAATT--GAGTTGGTTTGGTTGGTGGTGGGGCTGGGGAATCTGTGTCTTGAG-AAAATCCCCCTATGATCCTAATGTGTCGTCTTGCTGATTGAAAACCTCAGCCCTCTGCCCTGGAACTGTGCTACTCACACCTTAATTAGCACCGCAGTTCC-TG--CAGGGatggg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46779541 360 +  50890351 CACGACATCCCCTTGTCTATCCCCATACCCATTATAACGTCTCCACCG---CCCCCCGCAT------TCC----TCTCCCCCTACCCAATACGCTCTTAACCCCTCTAAATGAGACgttctcaaccctgcttatgcattagcaacacctgagcaccaaaaataaagtccagatcctcc---tcctccctttcatctcccctctc------ccacattctgaatt--tagttggcttggttggaggtggggctggggaatctgtgtcttgtg-aaaatccccctatgatcctaatgtgtcgtcttgctgattgaaaaccTCAGCCCTCTACCCTGGAACTGTGCTACTCACACCTTAATTAGCACCGCAGTTCC-TG--CAGGGATGGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45347349 344 +  49145316 -------TCCCCTTGTCTATCCCCATACCCTTTGTAACCTCTCCACCATC-GCCCCCGCGT------TCC----TCTCCATCTACCCAACACGCTCTTAACCCCCCTAAATGAGACGTTCTCAACCCTACTTATGCATC---AACACCTGAGCACCAAAAATAAAGTCCAGATCCTCCTCTTCCTCCCTTTCAGCTCCCCTCTC------C--Tattctgaatt--gaattggcttggctggaggttgggctggggaatctgcgtcttgtgaaaaatccccctattatcctaacgt---gccttccaga-tgaaaac-------ctttgTTGTGGAACTCTGCTGTTCACATTTTAATTAGCACCGGAGTTCCTTG--TAGGGGTGGG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19578317 320 - 122678785 -------------------GCCCCACCCCCACTATTAGGACCACCCTGTACACACCTACCTGGGAGGTCCATGACCCTCCCCCACCCCACCCACCC-----CACCCTCAGGGCGAggttctcagccctggctgtgcatt-----------------aaaaacacGGTCAGAATCCTACCACTCCTCACCCTTgcccccccccccgccccgccccACACTAAGCTTGGAGTGGGGTGGGGTGGAGGTGGGGCTGGGGAATCTCCG----GTG-AAAAGCCTCTTCCGCGCT---------GCCTT---GACTGACAGC-------TTCTGTTCTAGAGCAGGGCTGCTCAGACTTTAAC--GTGCGGGAGGTCT-TGTTCAAGGGCAGG
i canFam3.chr1              C 0 I 307
e mm10.chr7                   3617776 1422 + 145441459 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=149268.000000
s hg38.chr19_GL949751v2_alt     78085 164 +   1002683 GGCGGGGGATTGTTAAAATGTAGC------------------ttttttttttgcgatggagtctca--ctctcacccaggctgaagtgcagtggcgcgatcccggctcactgcaacctcggcctcctgggttcaagggattctcctgcctcagcctcccgagtagctgggattacaggcgcCCA
s panTro4.chr19              59011529 182 +  63644993 GGCGGGGGATTGTTAAAATGTAGCGCttttttttttttttttttttttttttgcgatggagtctca--ctctcacccaggctgaagtgcagtggcgcgatcccggctcactgcaacctcggcctcctgggttcaagggattctcctgcctcagcctcccgagtagctgggattacaggcgcCCA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59937243 160 +  64156825 GCC------------------------tttttgtttgtttggtttttttttggagacagagtctcgccctgtcacccaggctgatgtgcagtgaggcgatcccagctcactgcaaactcagcctcccgggttcaagggattcccctgcctcagcctctcgagtagctggggctacaggcgccca
i rheMac3.chr19             C 0 I 158
s papAnu2.chr19              47074674 148 +  51301725 gcc------------------------ttttt----------ttttttcttggagatggagtctca--ctgtcacccgggctgatgtgcagtgacgcgatcccggctcactgcaaactcagcctcccgggttcgagggattcccctgcctcagcctctcgagtagctgggagtacaggcgccca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46779901 155 +  50890351 GCC------------------------tttttttttttt---tctttttttggagatggagtctca--ctgtcacccaggctgatgtgcagtgacgcgatcccagctcactgcaaactcagcctcccgggatcaagggattcccctgcctcagcttctggaatagctgggactacaggcgccca
i chlSab2.chr6              C 0 I 160
s calJac3.chr22              45347693 176 +  49145316 GGCGGGGGATTGTTAAAATGTAGtttgtttttggtttttcttttttcttttggaaacatagtctta--ctgtcactcaggctga-----aatgacgccat-ctggctcactgcaacctccgcttcctgggttcaagggatttttctgcctcagcctcctgagtagctgggatgacagacacCCA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=56234.000000
s hg38.chr19_GL949751v2_alt     78249 289 +   1002683 GCTAAttttttgtttttgtttt--------------tgagactgagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggttcagtgcaagccccgccttccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgcccccatgcccggctaattttttgtatgttcaatagagacggggtttcaccgtgttagccaggatggtctcgatctcctaacctc--gtgatcctcccaactcggtctcccaaagtgctgggattacaggcgtgag
s panTro4.chr19              59011711 289 +  63644993 GCTAAttttttgtttttgtttt--------------tgagactgagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggttcactgcaagccccgccttccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgcccccatgcccggctaattttttgtatgttcaatagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatcctcccaactcggcctcccaaagtgctgggattacaggcgtgag
i panTro4.chr19             C 0 C 0
s calJac3.chr22              45347869 292 +  49145316 TCTAATTttttctttctttctttttttttattttcctgctatgcagtttccctctgtcttccaggctggagtgcagtggcatgatctcggctcactgcaacctctgcctttggggttcaagtgattctcctatctcagccttttgagtaagtgagattacaggcactca---ccacgtctggctaatttttt-tatttttagtagagacaggatttcgccatgttggccaggctggtctggaactcctgacctcaagtgatccac---------tttcccaaagtgctgagattataggcatgag
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e ponAbe2.chr19              55887748  25 +  60714840 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e chlSab2.chr6               46780056 160 +  50890351 I
e papAnu2.chr19              47074822   0 +  51301725 C
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59937403 158 +  64156825 I

a score=5755.000000
s hg38.chr19_GL949751v2_alt     78538 17 +   1002683 ccaccgcgcccggccAG
s panTro4.chr19              59012000 17 +  63644993 tcaccatgcccggccAG
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47074822 17 +  51301725 ccaccacgcctggctaa
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45348161 17 +  49145316 ccactgggccaagccag
i calJac3.chr22             C 0 I 1353
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e chlSab2.chr6               46780056 160 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59937403 158 +  64156825 I

a score=4450.000000
s hg38.chr19_GL949751v2_alt     78555 42 +   1002683 Cttttttttttttttttttttgagatggcgtctcgctctgtc
s panTro4.chr19              59012017 37 +  63644993 C-----tttttttttttttttgagatggcatctcgctctgtc
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47074839 40 +  51301725 t--ttttttgtatttttagtagagacagggtttcgccgtgtt
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e ponAbe2.chr19              55887748 25 +  60714840 I
e calJac3.chr22              45348178 1353 +  49145316 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e chlSab2.chr6               46780056 160 +  50890351 I
e macFas5.chr19              54942282  1 +  59248254 I
e rheMac3.chr19              59937403 158 +  64156825 I

a score=27544.000000
s hg38.chr19_GL949751v2_alt     78597 103 +   1002683 ttccaggctacagtgcaatggtttgatcatggctcactgcaacctccgcctctagggttcaagtgattctcctgcctccgcctcccaagta---------------------gctgggattaca
s panTro4.chr19              59012054 103 +  63644993 ttccaggctagagtgcaatggtttgatcatggctcactgcaacctccgcctccagggttcaagtgattctcctgcctccgccacccaagca---------------------gctgggattata
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887773 103 +  60714840 ttccaggctagagtgcaatggtttgatcatggctcactgtaacctccgcttacagggttcaagtgattttcctccctcagcctcccaagta---------------------gctgggattaca
i ponAbe2.chr19             I 25 C 0
s papAnu2.chr19              47074879  91 +  51301725 -----agccaggatg----gtcttgatc--------tcctgacctc----------------gtgatccgccctcctctgcctcccaagtgctgggtgGGCCACTGCTCacccctgggattaca
i papAnu2.chr19             C 0 I 5
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e calJac3.chr22              45348178 1353 +  49145316 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e chlSab2.chr6               46780056 160 +  50890351 I
e macFas5.chr19              54942282   1 +  59248254 I
e rheMac3.chr19              59937403 158 +  64156825 I

a score=4123.000000
s hg38.chr19_GL949751v2_alt     78700 7 +   1002683 ggcgagc
s panTro4.chr19              59012157 7 +  63644993 ggcgagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887876 7 +  60714840 ggcgggc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59937561 7 +  64156825 ggcaagt
i rheMac3.chr19             I 158 C 0
s papAnu2.chr19              47074975 7 +  51301725 ggcacgt
i papAnu2.chr19             I 5 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e calJac3.chr22              45348178 1353 +  49145316 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e chlSab2.chr6               46780056 160 +  50890351 I
e macFas5.chr19              54942282 1 +  59248254 I

a score=924732.000000
s hg38.chr19_GL949751v2_alt     78707 752 +   1002683 accaccacgcccggctaatttttgtatttttagtagagacaaggtttcaccatgttggccaggctggtcttg-aactcctg-accgcaagtgatctgccttcccaaagtgct-gggattacaggggtg-agccactgcgcccggccaaactgtaggttct-gattctgtaggtctgggg-tggggcatgggattctgcatttttgaagagttcccaggtcttgtcagtactgctggtccaccagccaGGCACTAGGTTAAGGTTCTGAACACTtattcagtatggcagccaccagccacaactggccactgagcatttgaagtggtgctggtatgaattgaggtggtataagac--actggatttcaaaaacttagtataacagagtgtgtaaactaccaataatcttttgttgattacatggcgaagtgatgttttggatgtactatggttttttttgttt---gtttgtttttgtttttttgagacggagtttcgcttttgtccaggctagagtgcaatggcctgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgtctcagcctccttagtagctgggattacaggcgcatgccactacacctggct--gtttttgtattttcagtagagacggggtttcatcatattggtcaggctggtctcgaactcctgacctcaggtgatccacccgtctcagcctcctaaagtcctgggattataggcatgagccacctcgcccatcca
s panTro4.chr19              59012164 755 +  63644993 accaccacgcccggctaatttttgtatttttagtagagacgaggtttcaccatgttggccaggctggtcttg-aactcctg-accgcaagtgatctgccttcccaaagtgct-gggattacaggggtg-agccactgcgcccggccaaactgtaggttct-gattctgtaggtctgagg-tggggcatgggattctgcatttttgaagagttcccaggtcttgtcagtactgctggtccaccagccaGGCACTAGGTTAAGGTTCTGAACACTtattcagtatggcagccaccaaccacacctggccactgagcatttgaagtggtgctggtatgaattgaggtggtgtaagac--actggatttcaaaaacttagtataacagagtgtataaactaccaataatcttttgttgattacatgtcgaagtgatgttttggatgtactatggtTttttttttttttggtttgtttttgtttttttgagacggagtttcgcttttgtccaggctagagtgcaatggcctgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgtctcagcctccttagtagctgggattacaggcgcatgccactacacccggct--gtttttgtatttttagtagagacggggtttcatcatattggtcaggctggtctcgaactcctgacctcaagtgatccacccgtctcagcctcctaaagtcctgggattataggcatgagccacctcgcccatcca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55887883 759 +  60714840 accaccacgcccggctaatttttgtatttttagtagagacagggtttcaccgtgttggccaggctggtcttgaaactcctgaaccgcaagtgatctgccttcccaaagtgctggggattacaggggtgaagccactgcgcctggccaaactgtaggttct-gattctgtaggtctggggatggggcatgggattctgcattttttaagagttcccaggtcttgtcagtactgctggcccaccagccaGGCACTAGG-TAAGGTTCTGAACACTtgttcagtatggcagccaccagccacatgtggccactgagcacttgaagtggggctggtatgaattaaggtggtataagac--actggatttcaaaaactcagtataacagagtgtgtaaactaccaataatcttttgttgattacatgttgaagtgatgttttggatgtaccatgttttttttttttt--ggtttggttttgtttttttgagacggaatttcacttttgtccaggctagagtgcaatggcctgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgtctcagcctccttagtagctgggattacaggcgcatgccactacacccggctaagtttttgtatttttagtagagatggggtttcatcatattggtcaggctggtctcgaactcctgacttcaggtgatccacccgtctcggcctcctaaagtcctgggattataggcatgagctacctcgcccatcca
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59937568 751 +  64156825 accaccacgcctggctaatttttgtgtttttagtagagatgaagtttcaccatgttgttcaggctggtcttg-aactcctg-accgcaagtgatccgctttcccaaagtact-gggattactggagtg-agccactgcgcccggccaaactgtgggttctcgattctgtaggtctggga-tggggcatgggattctgcatttttgaagagttgccaggtcttgtcagtactgttggtccgccagccaGGCACTAGG-TAAGGTTCTGAACACTtgttcgatctggcagccaccagccacacctggccactgagcacttgaaatgaggctggtatgcattgaggtggtataagacatactggatttcaaacacttagtataactaagtatgtaaactaccaatcgtcttttgttgattacatgttgaagtgatg-tttggatataccatggtttttttt------ggtctgtttttgtttttttgagacggagttttactttcgtctaggctggagtgcaatggcctgatctcaactcactgcaacctctgcctcccggggtcaagcgattctcctgtctcagcctcctgggtagctgggattacaggtgcacgccactacacc-agctaattttttgtatttttagtagagacagggtttcatcacattggtcaggctggtctcgaactcctgatctcaggtgatccacccgcctcagcctcctaaaatcctgggattacaggcgttagccacctcacccagcca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47074982 750 +  51301725 gccaccacgcctggctaatttttgtatttttagtagagatgaagtttcaccatgttgttcaggctggtcttg-aactcctg-accgcaagtgatccgctttcccaaagtact-ggggttaccggagtg-agccactgcgcccggccaaactgtgggttct-gattctgtaggtctgggg-tggggcatGGGATTCTGCATTTTTGAAGAGTTGCCAGGTCTTGTAAGTACTGTTGGTCCACCAGCCAGGCACTAGG-TAAGGTTCTGAACGCTTGTTCAATCTGGCAGCCACCAGCCATACCTGGCCACTGAGCACTTGAAGTGAGGCTGGTATGAATTGAGGTGGTATAAGACACACTGGATTTCAAACACTTAGTATAACTAAGTGTGTAAACTACCAGTCGTCTTttgttgattacatgttgaagtGATG-TTTGGATATACCATggtttttttt------ggtctgtttttgtttttttgagacggagttttactttcgtctaggctggagtgcaatggcctgatctcaactcactgcaacctctgcctcccgggttcaagcgattctcctgtctcagcctcctgggtagctgggattacaggcgcacgccactacact-ggctaatcttttgtatttttagtagagacagggtttcatcacattggtcaggctggtctcgaactcctgacctcaggtgatccacctgcctcggcctcctaaaatcttgggattacaggcgttagccacctcacccagcca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46780216 751 +  50890351 accaccacgcctggctaatttttgtatttttagtagagatgaagtttcactatgttgttcaggctggtcttg-aactcctg-accgcaagtgatccgctttcccaaagtact-gggattaccggagtg-agccactgcgcctggccaaactgtgggttct-gattctgtaggtctgggg-tggggcatgggattctgcatttttgaagagttgccaggtcttgtcagtactgttggtccaccagccaGGCACTAGG-TAAGGTTCTGAACACTtgttcgatctggcagccaccagccacacctggccactgagcacttgaagtgaggctggtatgaattgaggtggtataagacacactggatttcaaacacctagtataactaagtgtgtaaactaccaatcgtcttttgttgattacatgttgaagtcatg-tttggatataccatgggttttttt------ggtctgtttttgtttttttgagacggagttttgctttcgtctaggctggagtgcgatgacctgatctcaactcactgcaacctctgcctcccaggttcaagcgattctcctgtctcagcctcctgggtagctgggattacaggcgcatgccaccacacctggctaattttttgtatttttagtagagacagggtttcatcacattggtcaggctggtctcgaactcctgacctcaggtgatccacctgcctcggcctcctaaaatcttgggattacaggcgttagccacctcacccagcca
i chlSab2.chr6              I 160 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e calJac3.chr22              45348178 1353 +  49145316 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=13755.000000
s hg38.chr19_GL949751v2_alt     79459 7 +   1002683 agtatgt
s panTro4.chr19              59012919 7 +  63644993 agtatgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55888642 7 +  60714840 agtatgt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59938319 7 +  64156825 agtatgt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47075732 7 +  51301725 agtatgt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46780967 7 +  50890351 agtatgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45349531 7 +  49145316 agtatgt
i calJac3.chr22             I 1353 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19578637 307 - 122678785 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282 1 +  59248254 I

a score=372991.000000
s hg38.chr19_GL949751v2_alt     79466 206 +   1002683 ttcttaaaatttgtttcatctgtatctcttatttttactgtagctactagaagatataaaattatatacctggctcttac-catctgtcagacagcactgGCCTAGAACATTCCTTTTATGAACTG----TACCCCATCCCCCAGGACTCCTGGCTCCCACC-------------------------------------------------CTAAATGGACTGTG----GTCAGTGACTGTTGTTTGTGCAACCCTTTCTCCTC
s panTro4.chr19              59012926 202 +  63644993 ttcttaaaatttgtttcatctgtatcttttatttttactgtggctactagaagatataaaattatatacctggctcTTAC-CATCTGT----CAGCACTGGCCTAGAACATTCCTTTTATGAACTG----TACCCCATCCCCCAGGACTCCTGGCTCCCACC-------------------------------------------------CTAAATGGACTGTG----GTCAGTGACTGTTGTTTGTGCAACCCTTTCTCCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55888649 206 +  60714840 ttcttaaaatttgttttatctgtatcttttatttttactgtggctactagaagatataaaattatatacctggctcttac-catctgtcagacagcactgGCCTAGAACATTCCTTTTATGAACTG----TACCCCATCCCCCAGGATTCCTGGCTCCCACT-------------------------------------------------CTAGATGGACTGTG----GTCAGTGACTGTTGTTTGTGCAACCCTTTCTCCTC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59938326 208 +  64156825 ttcttaaaatttgtttcatctatatc--tcatttttactgtggctactaaaagatataaaattatatacctgggtcttac-catctgtcagacagtgctgGCCTAGAACATTCTTCTTATGCACTG----TACCCCATCCCCCGGGACTCCTGGCTCCCACC-------------------------------------------------CTAGATGGACTGTGACTTGTCAGTGACTGTTGTTTGTCCAAACCTTTCTTCTC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47075739 208 +  51301725 ttcttaaaatttgtttcatCTATATC--TTATTTTTACTGTGGCTACtagaagatataaaattatatacctGGCTCTTAC-CATCTGTCAGATAGTGCTGGCCTAGAACATTCTTCTTATGCACTG----TACCCCATCCCCTGGGACTCCTGGCTCCCACC-------------------------------------------------CTAGATGGACTGTGACCTGTCAGTGACTGTTGTTTGTGCAAACCTTTCTCCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46780974 204 +  50890351 ttcttaaaatttgttttatctgtatc--ttatttttactgtgcctactagaagatataaaattatatacctggctcTTAC-CATCTGTC----AGTGCTGGCCTAGAACATTCTTCTTATGCACTG----TACCCCATCCCCCGGGACTCCTGGCTCCCACC-------------------------------------------------CTAGGTGGACTGTGACCTGTCAGTGACTGTTGTTTGTGCAAACCTTTCTCCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45349538 250 +  49145316 ttcttaaaatttgtttcatctgtatcttttatttt---------tactagaagatacaaaattatatacctggctcTTAC-CATCTGTCAGACCTTTCGGGCCTAGAACAATCCTTTTATGTACTG----TGCCCCGTCCCCCAGGACTCTTGGCTCCCACTGAGTGGACTGTGACTCCTTAGTGGCTGTTCTTTGGACTCTTGGCTCCCACTGAGTGGACTGTGACCCCTTAGTGGCTGTTGTTTGTACAACCCTTTCTCCTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19578944 196 - 122678785 tttttaaaa----actcatttgtatcttttattttta-tgtgcctgttagaaggtgtgaaactaaatatgtggctcttatgtttctgctggacagtgctgGCCTAGAACATTCTTTTTACCCCCCACCCCTGCCCTACTCCCTGAGACTCCTGGTGCCCACC-------------------------------------------------CTAGGTGGACTGTGATTTCTGAG--------------ACAACCCTTCCTTTCC
i canFam3.chr1              I 307 I 4
e mm10.chr7                   3617776 1422 + 145441459 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282   1 +  59248254 I

a score=22779.000000
s hg38.chr19_GL949751v2_alt     79672 16 +   1002683 CAGTTTGTAAGGCttt
s panTro4.chr19              59013128 16 +  63644993 CAGTTTGTAAGtcttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55888855 16 +  60714840 CAGTTTGTAAGtcttt
i ponAbe2.chr19             C 0 I 686
s rheMac3.chr19              59938534 16 +  64156825 CAGTTTGTAACAGTTT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47075947 16 +  51301725 CAGTTTGTAACAGTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781178 16 +  50890351 CAGTTTGTAACAGttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45349788 16 +  49145316 CAGTTTGTAACAGtct
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19579140  4 - 122678785 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282  1 +  59248254 I

a score=1179.000000
s hg38.chr19_GL949751v2_alt     79688 1 +   1002683 t
s panTro4.chr19              59013144 1 +  63644993 t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55889557 1 +  60714840 t
i ponAbe2.chr19             I 686 C 0
s rheMac3.chr19              59938550 1 +  64156825 T
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47075963 1 +  51301725 T
i papAnu2.chr19             C 0 I 21
s chlSab2.chr6               46781194 1 +  50890351 t
i chlSab2.chr6              C 0 I 5
s calJac3.chr22              45349804 1 +  49145316 c
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19579140 4 - 122678785 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e macFas5.chr19              54942282 1 +  59248254 I

a score=21417.000000
s hg38.chr19_GL949751v2_alt     79689 13 +   1002683 tttttttttt---ttt
s panTro4.chr19              59013145 13 +  63644993 tttttttttt---ttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55889558 13 +  60714840 tttttttttt---ttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59938551 12 +  64156825 -TTTTTTTTT---TTT
i rheMac3.chr19             C 0 I 661
s macFas5.chr19              54942283 15 +  59248254 -tttctttttgggttt
i macFas5.chr19             I 1 I 1
s papAnu2.chr19              47075985 12 +  51301725 -ttttttttt---ttt
i papAnu2.chr19             I 21 C 0
s chlSab2.chr6               46781200  9 +  50890351 -ttttttttt------
i chlSab2.chr6              I 5 I 3
s calJac3.chr22              45349805 13 +  49145316 tttttttttt---ttt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19579140  4 - 122678785 I
e nomLeu3.chr10             102653521 1335 - 106955855 I

a score=438068.000000
s hg38.chr19_GL949751v2_alt     79702 286 +   1002683 tttggtgatggagtctctctctgttgcccaggctggagtgcaatggcacaatctgggctcactgcaacctctgcctcccaggctcaagggattcttctgcctcagcctcctgagtagctgggattacaggctcctgccaccacgcccggctaattttcgtatctttagtagagatggggtttcat----catgttgtccaggctggtcgcgaactcctgacctcaggtgatccgcccacattggccgcccaaagtgctgggattacaggcttgagccactgtgcccggcc
s panTro4.chr19              59013158 282 +  63644993 ----gtgatggagtctctctctgttgcccgggctggagtgcaatggcacaatctgggctcactgcaacctctgcctcccaggctcaagggattcttctgcctcagcctcccgagtagctgggattacagcctcctgccaccacgcccggctaatttttgtatctttagtagagatggggtttcat----catgttgtccaggctggtcgcgaactcctgacctcaggtgatccgcccacattggccgcccaaagtgctgggattacaggcgtgagccactgtgcccggcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55889571 286 +  60714840 tttggggacggagtctctctctgttgcccaggctggagtgcaatggcacaatctgggcttactgcaacctctgcctcccaggttcaagggattcttctgcctcagcctcctgagtagctgggattacaggcttctgccaccacacccggctaatttttgtgcctttagtagagatggggtttcat----cacgttgtccaggttggttgtgaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccacggtgcccagcc
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54942299 284 +  59248254 --tttagacagagtctcactctgtcgcccaggctggagtgcaatggcgcaatatcagctcactgcaacctctgcctcctgggttcaagtgattctcctgccttagcctcccgagtagctgggattacaggcgcccactaccatgcccagcaaatttttgcatttttagtagagtcagggtttcac----tatattggccaggctggtctccaactcctgacctcaggtgatctgcctgccttatcctcccaaagtgctgggattacaggcatgagccactgtgcctggcc
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47075997 282 +  51301725 ttttgcgacagagt----ctctgttgcccaggccagagtgcagtggcacaatgtgggctcactgcaacctctgcctcccaggctcaagggattctcctgcctcagcctgctgaggagctgagattacaggctcctgccgccatgccaggctaatttttgtatctttagtagagatggggattcat----catgttgtccaggctggtcgtgaactcctgacctcaggtgatctgcccacctttgcctcccaaagtgctgggattacaggcatgagccactgtgcctggcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781212 282 +  50890351 gtttgcgacagagt----ctctgttgcccaggctggagtgcagtggcacaatgtgggctcactgcaacctctgcctcccaggctcaagggattctcctgcctcagcctgctgaggagctgagattacaggctcctgccgccatgcccggctaatttttgtatctttagtagagatggggattcat----catgttgtccaggctggtcgtgaactcctgacctcaggtgatctgcccacctttgcctcccaaagtgctgggattacaggcatgagccactgtgcctggcc
i chlSab2.chr6              I 3 C 0
s calJac3.chr22              45349818 280 +  49145316 ---tgagatggaat----ctgtgtcacccaggctggagtgcagtggcacgatctgggctcactgcagcctcaacctcccaggctcaaggg--tctcctgcctcagcctcctgaatagctgggattataggcgcc-accaccacatgcagctaattttttagtttttagtagagatggggtttcattcaccatgttggtcaggcaggtctcgaactcctgacctcaggtgatctgcccaccttgggctctcaaagcactgggattacaggcgtgagccaccgcgtccagcc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19579140   4 - 122678785 I
e nomLeu3.chr10             102653521 1335 - 106955855 I
e rheMac3.chr19              59938563 661 +  64156825 I

a score=5096.000000
s hg38.chr19_GL949751v2_alt     79988 3 +   1002683 AAA
s panTro4.chr19              59013440 3 +  63644993 AAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55889857 3 +  60714840 AAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102654856 3 - 106955855 AAA
i nomLeu3.chr10             I 1335 C 0
s macFas5.chr19              54942583 3 +  59248254 AAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076279 3 +  51301725 aaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781494 3 +  50890351 AAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350098 1 +  49145316 --G
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e canFam3.chr1               19579140 4 - 122678785 I
e rheMac3.chr19              59938563 661 +  64156825 I

a score=205892.000000
s hg38.chr19_GL949751v2_alt     79991 113 +   1002683 TTTGTAACAG-TCTTGATTTCTCCAGAACAGTCCCATGACACTA-CCCCCA---------GGATGCTCCATGATGA-CCCTACACTCAA-ACGTGCTCATTCCATGACCAACCCCACTGCTGCCTC-
s panTro4.chr19              59013443 113 +  63644993 TTTGTAACAG-TCTTGATTTCTCCAGAATAGTCCCATGACACTA-CCCCCA---------GGATGCTCCATGATGA-CCCTACACTCAA-ACGTGCTCATTCCATGACCAACCCCACTGCTGCCTC-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55889860 112 +  60714840 TTTGTAACAG-TCTTGATTTCTCCAGAATA-CCCCATGACACTACCCCCCA---------GGATGCTCCATGATGACCCCTACACTCAA-AC-TGCCCATT-CACAAACAACCCCACCGCTGCCTC-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102654859 114 - 106955855 TTTGTAACAG-TCTTGATTTCTCCGGAATAGTCCCATGACACTA-CTGCCA---------GGATGCTCCATGATGACCCCTACACTTAT-ACGCACTCATTCCATGACCAACCCCACTGCTCCCTC-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54942586 115 +  59248254 TGTGTAACAG-TCTTAATTTCTCCAGAATAGTCCCATGACACTA-CCCACA---------GGATGCTCCATGATGACCCCTACACTCAAAACGTACTCATTCCACGACCAACCCCAGTGCTTCCTC-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076282 115 +  51301725 tgtgTAACAG-TCTTAATTTCTCCAGAATAGTCCCATGACACTA-CCCACA---------GGATGCTCCATGATGACCCCTACACTCAAAACGTACTCATTCCACGACCAACCCCAGTGCTTCCTC-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781497  80 +  50890351 TGTGTAACAG-TCTTAATTT---------------------------------------------CTCCATGATGACCCCTGCACTCAATATGTACTCATTCCACAACCAACCCCAGTGCTTCCTC-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350099 107 +  49145316 TTTGTAACAA-TCTTGATTTCTAAGGAACAGTCCCATGACACCA-CCCCCA---------GGATGCTCCGTGATGAACGCTA--------ATGCACTCATTCCATGACCAACCCCACTGCTCCCTC-
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19579144 123 - 122678785 TTTGTAACAGTTCATGATTCCACTGGAAGATCCCCAAACCATTC-CTCTCACCCACTACCTTGTGCTCCCTGACCACCTCTACACTC---ATGCCCTCATTCTGTGACCACCCCCATGTCTTCCCTC
i canFam3.chr1              I 4 C 0
e mm10.chr7                   3617776 1422 + 145441459 I
e rheMac3.chr19              59938563 661 +  64156825 I

a score=98133.000000
s hg38.chr19_GL949751v2_alt     80104 47 +   1002683 ---------CTCCAGGCCCCACGTATCTGTGAGTGTTAGGCTCCAACCCCTA------CCTC
s panTro4.chr19              59013556 47 +  63644993 ---------CTCTAGGCCCCACGTATCTGTGAGTGTTAGCCTCCCACCCCTA------CCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55889972 45 +  60714840 ---------CTCTA-GCCCCATGTATCTGTGAACGTGAGGCTCC-ACCCCTA------CCTC
i ponAbe2.chr19             C 0 I 51
s nomLeu3.chr10             102654973 46 - 106955855 ---------CTCTAGGCCCCAT-TATCTGTGAGTGTTAGGCTCCCACCCCTA------CCTC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54942701 47 +  59248254 ---------CTCTAGGCCCCATGTATCTGTGAGTGTTAGACTCCTACCCCTA------CCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076397 47 +  51301725 ---------CTCTAGGCCCCCTGTATCTGTGAGTGTTAGACTCCCACCCCTA------CCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781577 47 +  50890351 ---------CTCTAGGCCGCATGTATCTGTGAGTGTTAGACTCCCACCCCTA------CCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350206 43 +  49145316 ---------TTCTAGGCCCCATGTATCTGT----GTTGGGCTCCCACCCCTA------ACTC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619198 53 + 145441459 ---------CTTTGGACCTCATGTGTTCCTGAGTGCTTGTCTCCAACCTCTATGCTATTCTC
i mm10.chr7                 I 1422 C 0
s canFam3.chr1               19579267 34 - 122678785 CTCTGTGCCCTCTAGGTCCCAT-------------------TCCCGCTCCGT------C---
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              59938563 661 +  64156825 I

a score=13733.000000
s hg38.chr19_GL949751v2_alt     80151 6 +   1002683 CACTTA
s panTro4.chr19              59013603 6 +  63644993 CACTTA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655019 6 - 106955855 CACTTA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54942748 6 +  59248254 CACTTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076444 6 +  51301725 CACTTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781624 6 +  50890351 CACTTA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350249 6 +  49145316 CACTTA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619251 4 + 145441459 CACT--
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579301 6 - 122678785 CACTGA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890017 51 +  60714840 I
e rheMac3.chr19              59938563 661 +  64156825 I

a score=147495.000000
s hg38.chr19_GL949751v2_alt     80157 71 +   1002683 ACCCCCCAAAAAAGAGTTTTAAACCCTCCT-GTCTATAAGTAGGGATCCCAAGGTACCAAG-GATCCTCCTGG
s panTro4.chr19              59013609 71 +  63644993 ACCCCCCAAAAAAGAGTTTTAAACCCTCCT-GTCTATAAGTAGGGATCCCAAGGTACCAAG-GATCCTCCTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55890068 72 +  60714840 ACCCCACAAAAAAGAGTTTTAAATCCTCCTAGTCTATAAGTAGGGATCCC-AGGTACCAAGCGATCCTCCTGG
i ponAbe2.chr19             I 51 M 933
s nomLeu3.chr10             102655025 71 - 106955855 ACCCCCCAAAGAAGAGTTTTAAACCCTCCT-GTCTGTAAGTAGGAATCCCGAGGTACCAAG-GATCCTCCTGG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54942754 69 +  59248254 ACCCCCCGA--AAGAGTTTTAAGCCCTCCT-GTCTATAAGTAGGGATCTCAGGGTACCAAG-GATCCTCCTGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076450 69 +  51301725 ACCCCCCGA--AAGAGTTTTAAGCCCTCCT-GTCTATAAGTAGGGATCCCAGGGTACCAAG-GATCCTCCTGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781630 69 +  50890351 ACCCCCGAA--AAGAGTTTTAAGTCCTCTT-GTCTATAAGTAGGGATCCCAGGGTACCAAG-GATCCTCCTGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350255 70 +  49145316 ACCCCCCAAAAAAGAGTTTTAAACTCTCCT-ATCTAGAA-TAGGGATCCCAAGGTACCAAG-GATCTTCCTGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619255 60 + 145441459 ----CTCAG------GATTTACACTGACCC-AGGT-TAAGTGGGGATGGTTGAGTGCTGAG-GACCCACCAAA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579307 36 - 122678785 ------------------------------------TAAGTGGGGATCTCAGAATGCCATG-GGGTTTCCTGG
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              59938563 661 +  64156825 I

a score=47600.000000
s hg38.chr19_GL949751v2_alt     80228 47 +   1002683 ACGTGCTGGCCCTCCCTGCTGCCCT-CCCCCTGCGCACTTTATCTTCC
s panTro4.chr19              59013680 47 +  63644993 ACGTGCTGGCCCTCTCTACTGCCCT-CCCGCTTCGCACTTTATCTTCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655096 47 - 106955855 AGGTGCTGGCCCTCCCTGCTGCCCT-CCCCCTTCGCACTTTATCTTCC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54942823 39 +  59248254 ------AGGCCCTCCCCGCTGCCCT-CCCGCTTTGCAGTTTATCTT--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076519 39 +  51301725 ------AGGCCCTCCCCGCTGCCCT-CCCGCTTTGCAGTTTATCTT--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781699 39 +  50890351 ------AGGCCCTCCCCGCAGCCCT-CCCGCTTTGCAGTTTATCTT--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350325 35 +  49145316 AGGTGCTGGCCCTCCCC-------------CTTTGCACTTTATCTTCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619315 36 + 145441459 ------GGGCCCTACTGGTTGTGCTGGCCTTTTCTCGCTCCC------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579343 47 - 122678785 AGGGGCAGGACCTCCCCGCTCCCCT-CCTCCTAAGTACCTGACTCCTA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890140 933 +  60714840 M
e rheMac3.chr19              59938563 661 +  64156825 I

a score=771947.000000
s hg38.chr19_GL949751v2_alt     80275 293 +   1002683 CTTTGCCAAGGCTCACCTTCT---CTTCCCCTCTCTTC---AGAGCCACCTTCCCCTGGGCCTCACCCCTGTGTCTCTCCACAGCTGTAATTCTGCCCCCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAAGGCCACGCCCTACAACTACCCAGGTGAGTGGGGGCCAG--------------GCAGGGATCCCCGGAATAGGCCCAGCCTCCCTGTGCTGGCGTAA---------GGGCAGTTATGGGCAGGTCTTTCCTAAGCAGTTATCAGAGATTCTGCAGTGGTGCCCGGACCCCCC---GTTCCATTTTTT
s panTro4.chr19              59013727 294 +  63644993 CTTTGCCAAGGCTCAGCTTCT---CTTCCCCTCTCCTC---AGAGCCACCTTCCCCTGGGCCTCACCCCTGTGTCTCTCCACAGCTGTAATTCTGCCCCCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAAGGCCACGCCCTACAACTACCCAGGTGAGTGGGGGCCAG--------------GCAGGGATCCCCGGAATAGGCCCAGCCTCCCTGTGCTGGGGTAA---------GGGCAGTTATGGGCAGGTCTTTCCTAAGCAGTTATCAGAGATTCTGCAGTGGTGCCTGGACCCCCC--TGTTCCATTTTTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655143 293 - 106955855 CTTTGCCAAGGCTCAGCTTCT---CTTCCCCTCTCCTC---AGAGCCACCTTCCCCTGGGCCTCACCCCTGTGTCTCTCCACAGCTGTAATTCTGCCCCCATTGAGCCCCTACTTCAAGTACTCCGCCATGATCAACAGGGCCACGCCCTACAACTACCCAGGTGAGTGGGGGCCAG--------------GCAGGGATCGCTGGCATAGGCCCAGCCTCCCTGGGCTGGGGTAA---------CGGCAGTTATGGGCAGGTCTTTCCTAAGCAGTTATCAGAGATTCTGCAGTGGTGCCTGGACCCCCC---ATTCCATTTTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59939224 295 +  64156825 CTTTGCCAAGGCTCAGATTCT---CTTTCCCTCTCCTC---AGAGCCACCTTCCCCTGGGGCTCACCCCTGTGTCTCTCCACAGCTATAATTATGCCCACATTCAGCCCCTACGTCAAGTACTCCATCATGATCAACGAGGCCACGCCCTACAACTACCCAGGTGAGTAGGGGCCCG--------------GCAGGGATCCCTGGGATGGGCCCAGCCTCCCTGTGCTGGGGTAG---------GGGCAGTTACGGGCAGCTGTTTCCTGAGCAGGCATCAGAGATTCAGCAGTGGTGCCTGGATTCCCC-CCGTTCCATTTTTT
i rheMac3.chr19             I 661 C 0
s macFas5.chr19              54942862 292 +  59248254 ---TGCCAAGGCTCAGATTCT---CTTTCCCTCTCCTC---AGAGCCACCTTCCCCTGGGGCTCACCCCTGTGTCTCTCCACAGCTATAATTATGCCCACATTCAGCCCCTACGTCAAGTACTCCATCATGATCAACGAGGCCACGCCCTACAACTACCCAGGTGAGTAGGGGCCCG--------------GCAGGGATCCCTGGGATGGGCCCAGCCTCCCTGTGCTGGGGTAG---------GGGCAGTTACGGGCAGCTGTTTCCTGAGCAGGCATCAGAGATTCAGCAGTGGTGCCTGGATTCCCC-CTGTTCCATTTTTT
i macFas5.chr19             C 0 I 319
s papAnu2.chr19              47076558 290 +  51301725 ---TGCCAAGGCTCagattct---ctttccctctcctc---agaGCCACCTTCCCCTGGGGCTCACCCCTGTGTCTCTCCACAGCTATACTTATGCCCACATTCAGCCCCTACGTCAAGTACTCCATCATGATCAACGAGGCCACGCCCTACAACTACCCAGGTGAGTAGGGGCCAG--------------GCAGGGATCGCTGGGATGGGCCCAGCCTCCCTGTGCTGGGGTAG---------GGGCAGTTACGGGCAGCTGTTTCCTGAGCAGGCATCAGAGATTCAGCAGTGGTGCCTGGATTTCCC---GTTCCATTTTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46781738 292 +  50890351 ---TGCCAAGGCTCAGATTCC---CTTCCCCTCTCCTC---AAAGCCACCTTCCCCTGGGGCTCACCCCTGTGTCTCTCCACAGCTATAATTATGCCCGCATTCAGCCCCTACGTCAAGTACTCCATCATGATCAACAAGGCCACGCCCTACAACTACCCAGGTGAGTAGGGGCCAG--------------GCAGGGATCCCTGGGATGGGCCCAGCCTCCCTGTGCTGGGGTAG---------GGGCAGTTACGGGCAGCTGTTTCCTGAGCAGGCATCAGAGATTCAGCAGTGGTGCCTGGATTCCCC-CTGTTCCATTATTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350360 288 +  49145316 CTTTGCCAAGGCTCAGCCTCT---CTTCCCCTCTCCTC-AGAGAGCTGCCTTCCCCTGGGCCTCACACCTGTGTCTCTCCACAGCTGTAATTCTGCCCCCAATCAGCCCCTACTTCAAGTACTCTGTCATGATCAACAAGGCCACGCCCTACAACTACCCAGGTAAGTGGGGGCCCT--------------GCAGGGAT-----------------GCACCCTGTGCTGGGGCGGGGTGGGGCCGGGCTGGTATGGGTGGGTCTTTCCTAAGCAGGGGTCAGACAT--AGCAGTGCTGCCTGTACTCCCCCCTGCTCAACTTTTT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619351 212 + 145441459 TTTTGCCAGGGCTTTTTCTAC---CCTTTCCCCACCCCTGGAGAGCTACTTCATCCTGGGGT---CTTTTGTCTTTCTCCACAGCTATAATTATGCCCATGATTAGCCCCTACACCAAGTATGCTAGCATGATCAACAAGGCCACACCCTACAACTACCCAGGTGAGCAGGGA-----------------------------------------------CCTGTGTTGGGGGGA---------GGGC------------------------CAGACATCTG------TGTAGGAGAGTCCTTA---------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579390 299 - 122678785 GTTTGCTGAGGTTCAGCTTCTGCCCCTCCCCTGTCCTG---AAAGCCACCTTCCCCTGGGCCTCACCC----GTCTCTCCACAGCTGTGATTCTGCCCATCTTCAGTCCCTTCACCAAATATGCCACCATGATCAACCAGGCCACACCCTACAACTATCCAGGTGAGTGGGAGCTGGAGGGCTGGCCCAAAGCAGGGGT-GGAGGGTGAGGAGGGACCTTCCTGCGCTGGGGGAG---------GAATAATCATGGGTAGGTTCTTCCTCAGCAAGGATCTGAGAACCTGCTGTATGGACTGGACTTTCT---------TTTTTC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890140 933 +  60714840 M

a score=60685.000000
s hg38.chr19_GL949751v2_alt     80568 25 +   1002683 AAGAATTGAGATATAATTCGTATAC
s panTro4.chr19              59014021 25 +  63644993 AAGAATTGAGATATAATTCGTATAC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655436 25 - 106955855 AAGAATTGAGATATAATTCGTATAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59939519 25 +  64156825 AAGAATTGAGATATAATTCGTATCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54943473 25 +  59248254 aagaaTTGAGATATAATTCGTATCC
i macFas5.chr19             I 319 C 0
s papAnu2.chr19              47076848 25 +  51301725 AAGAATTGAGATATAATTAGTGTCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782030 25 +  50890351 AAGAATTGAGCTATAATTCGTATAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350648 25 +  49145316 AGGAATTGAGCTCCAATTCCTATAC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619563 25 + 145441459 ATGCATTGAAATGTTCTTTGTCCAC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579689 19 - 122678785 ------TGAGATCTGATCCATGTGC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890140 933 +  60714840 M

a score=19457.000000
s hg38.chr19_GL949751v2_alt     80593 11 +   1002683 TATTCTGTGTT
s panTro4.chr19              59014046 11 +  63644993 TAGTCTGTGTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655461 11 - 106955855 TATTCTGTGTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59939544 11 +  64156825 TATTCTGTGTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54943498 11 +  59248254 TATTCTGTGTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076873 11 +  51301725 TATTCTGTGTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782055 11 +  50890351 TATTCTGTGTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350673  9 +  49145316 TGCTCTGTT--
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619588 11 + 145441459 GCTTttttttt
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19579708  0 - 122678785 C
e ponAbe2.chr19              55890140 933 +  60714840 M

a score=1207.000000
s hg38.chr19_GL949751v2_alt     80604  9 +   1002683 ---TGTGCT-----TCG
s panTro4.chr19              59014057  9 +  63644993 ---TGTGCT-----TCG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655472 14 - 106955855 ---TGTGCTTTCAGTTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59939555  9 +  64156825 ---TGTGCT-----TCG
i rheMac3.chr19             C 0 I 15
s mm10.chr7                   3619599  9 + 145441459 tcctttcct--------
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19579708  0 - 122678785 C
e ponAbe2.chr19              55890140 933 +  60714840 M
e calJac3.chr22              45350682  0 +  49145316 C
e chlSab2.chr6               46782066  0 +  50890351 C
e papAnu2.chr19              47076884  0 +  51301725 C
e macFas5.chr19              54943509  0 +  59248254 C

a score=27502.000000
s hg38.chr19_GL949751v2_alt     80613 132 +   1002683 ---t-ttttgtttttttgg----gtttttttgagacagagtctcgctctgtcgccaaggctggagtgcagtggcgcgatctcagctcactgcaagctc--------------------------------agcctcccgagtagctgggactacaggtgcccgccaccacga
s panTro4.chr19              59014066 132 +  63644993 ---t-ttttgtttttttgg----gtttttttgagacagagtctcgctctgtcgccaaggctggagtgcagtggcgcgatctcagctcactgcaagctc--------------------------------agcctcccgagtagctgggactacaggtgcccgccaccacga
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655486 169 - 106955855 ---TGttttgttttttttgttttttttttttgagacagaattttgctctgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcaagctccgcctcctgggttcacaccattctcctgccttagcctcccaagtagctgggactacaggcacccgccaccacga
i nomLeu3.chr10             C 0 C 0
s mm10.chr7                   3619608  71 + 145441459 tttc-ttttcttttcttttttcttttcttttgagatagggtttctctgtgtagccctggctg----------------------------------tc----------------------------------------------ctgtaact--------------------
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19579708   0 - 122678785 C
e ponAbe2.chr19              55890140 933 +  60714840 M
e calJac3.chr22              45350682   0 +  49145316 C
e chlSab2.chr6               46782066   0 +  50890351 C
e papAnu2.chr19              47076884   0 +  51301725 C
e macFas5.chr19              54943509   0 +  59248254 C
e rheMac3.chr19              59939564  15 +  64156825 I

a score=4172.000000
s hg38.chr19_GL949751v2_alt     80745 45 +   1002683 cacgcaaactttttcgtatttttttagtagaggcggggtttcacc
s panTro4.chr19              59014198 43 +  63644993 catgcaaattttttcgta--tttttagtagaggcggggtttcacc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655655 43 - 106955855 ccagctaatttttttgta--tttttagtagagacggagtttcacc
i nomLeu3.chr10             C 0 C 0
s mm10.chr7                   3619679 11 + 145441459 --------------------cacttagtaga--------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579708 32 - 122678785 CATAAAAATCATTTCCTGTCTGTTT-------------TTGCACT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890140 933 +  60714840 M
e calJac3.chr22              45350682  0 +  49145316 C
e chlSab2.chr6               46782066  0 +  50890351 C
e papAnu2.chr19              47076884  0 +  51301725 C
e macFas5.chr19              54943509  0 +  59248254 C
e rheMac3.chr19              59939564 15 +  64156825 I

a score=34764.000000
s hg38.chr19_GL949751v2_alt     80790 98 +   1002683 gtgttagccaggattgtctcgatctcctgaccttgtgatccactcacctcggcctcccaaagtgctgggattacaggtgtgagccaccg-cgcctggcc
s panTro4.chr19              59014241 98 +  63644993 gtgttagccaggatggtctcgatctcctgaccttgtgatccactcacctcggcctcccaaagtgctgggattacaggcgtgagccactg-cgcctggcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655698 98 - 106955855 atattagccaggatgctctcgatctcctgaccttgtgatccactcgcctcggcctcccaaagtgctgggattacaggcgtgagccaccg-cgcctggcc
i nomLeu3.chr10             C 0 C 0
s mm10.chr7                   3619690 84 + 145441459 -------ccaggctggccttgaactca-------gaaatccacctgcctctgcctccc-aagtgctgggattgaaggggtgcaccaccaccgcccagtt
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19579740  0 - 122678785 C
e ponAbe2.chr19              55890140 933 +  60714840 M
e calJac3.chr22              45350682  0 +  49145316 C
e chlSab2.chr6               46782066  0 +  50890351 C
e papAnu2.chr19              47076884  0 +  51301725 C
e macFas5.chr19              54943509  0 +  59248254 C
e rheMac3.chr19              59939564 15 +  64156825 I

a score=6636.000000
s hg38.chr19_GL949751v2_alt     80888  5 +   1002683 TGTGC-----
s panTro4.chr19              59014339  5 +  63644993 TGTGC-----
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655796  5 - 106955855 TGTGC-----
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54943509  5 +  59248254 TGTGC-----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076884  5 +  51301725 TGGGC-----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782066  5 +  50890351 TGTGC-----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350682  5 +  49145316 TGTGC-----
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619774 10 + 145441459 TGTCCACACT
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19579740  0 - 122678785 C
e ponAbe2.chr19              55890140 933 +  60714840 M
e rheMac3.chr19              59939564 15 +  64156825 I

a score=65229.000000
s hg38.chr19_GL949751v2_alt     80893 37 +   1002683 TTCGAGTTTCTATTAC-----CTTTCCAGATTTCTGTCTCTC
s panTro4.chr19              59014344 37 +  63644993 TTCGAGTTTCTATTAC-----CTTTCCAGATTTCTATCTCTC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655801 37 - 106955855 TTCGAGTTTCTATTAC-----CTTTCCAGATTTCTGTCCCTC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54943514 21 +  59248254 TTCGAGTTTCTATTAC-----CTTTC----------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076889 37 +  51301725 TTCGAGTTGCTATTAC-----CTTTCCACATTTGTGTCCCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782071 37 +  50890351 TTCGAGTTTCTATTAC-----CTTTCCACATTTCTGTCCCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350687 36 +  49145316 TTCCAGTTTCCATTTC-----C-TTCCAGgtttctgtccctc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619784 42 + 145441459 TTTAAGTTACCCTAACATGCTCTCTCCAGATTTCTGTTCATC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579740 37 - 122678785 TTTGAGTTTCTGTTGT-----CATTCCAGATTTGTATTCCTT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890140 933 +  60714840 M
e rheMac3.chr19              59939564 15 +  64156825 I

a score=618503.000000
s hg38.chr19_GL949751v2_alt     80930 297 +   1002683 TCTGGGTTCCCATCTGTGGTGGTTTCTTGGTCTCCATCTTCTCAGGTTTCTGTCCTGTTTCCCCATCTCTTTTGACCCTAGCTCTC-TAGTGCGCGGGAtctct------------------------ccctcg----ctatctctctggttttccgtgtctctcagtctctgtatttcccgcctctttctGCATCACTGATTCTCTGACCCTTCCCC---TCTCACCCCTGGG--GTCCCCCTTCCCTCTCTGAACATAAAGCGACAGACCAGCTCTTCTCTCCAGGGCCCTGGAGACGTGCTGGTCTCAGTGGCCCA-CCTCCTGCCCCA
s panTro4.chr19              59014381 295 +  63644993 TCTGGGTTCCCATCTGTGGTGGTTTCTCGGTCTCCATCTTCTCAGGTTTCTGTCCTGTTTCCCCATCTC--TTGACCCTAGCTCTC-TAGTGCGCGGGATCTCT------------------------CCCTCA----CTATCTCTCTGGTTTTCCGTGTCTCTCAGTCTCTGTATTTCCCGCCTCTTTCTGCATCACTGATTCTCTGACCCTTCCCC---TCTCACCCCTGGG--GTCCCCCTTCCCTCTCTGAACATAAAGCAACAGACCAGCTCTTCTCTCCAGGGCCCTGGAGACGTGCTGGTCTCAGTGGCCCA-CCTCCTGCCCCA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102655838 290 - 106955855 TCTGGGTTCCCATCTGTGGTGGTTTCTTGGTCTCCATCTTCTCAGGTTT------------CCCATCTCTTTCGACCCTCGCTCTCTTCGTGCGTCGGAtctct------------------------cgctcgctgtctatctctctggttttccatgtctctcagtctctGTATTTCCAGCCTCTTTCTGCATCACTGATTCTCTGACCCTTCCCC---TCTCACCCCTGGG--GTCCCCCTTCCCTCTCTGAACATAAAGCAACAGACCAGCTCTTCTCTCCAGGGCCCTGGAGACGTGCTGGTCTCAGTGGCCCA-CCTCCTGTCCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59939579 286 +  64156825 TCTGGGTTCCCATCTGTGTTGTTTTCT--GTCTCCATCTTTTCAGGTTTCTGTCCTGTTTCCCCATCTCTTTCGACCCTAGctcgc-tctcg------------------------------------ctctct----ctctctctctggttttccatgtctctcagtctctgtatttcctgcctctttctgcatcactgattctctgacccttcccctcatctcagccctcgg--gccccccttctctctctGAACATAAAGCGACAGACCAGCTCTTCTCTCCAGGACTCTGGAGACATGCTGGTCTCAGTGGCCCA-CCTCCTGTCCCA
i rheMac3.chr19             I 15 C 0
s macFas5.chr19              54943535 280 +  59248254 --TGGGTTCCCATCTGTGTTGTTTTCT--GTCTCCATCTTTTCAGGTTTCTGTCCTGTTTCCCCATCTCTTTCGACCctagctcgc-t----------------------------------------cgctcg----ctctctctctGGTTTTCCATGTCTCTCAGTCTCTGTATTTCCTGCCTCTTTCTGCATCACTGATTCTCTGACCCTTCCCCTCCTCTCAGCCCTGGG--GTCCCCCTTCCCTCTCTGAACATAAAGCGACAGACCAGCTCTTCTCTCCAGGACTCTGGAGACATGCTGGTCTCAGTGGCCCA-CCTCCTGTCCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47076926 302 +  51301725 TCTGGGTTCCCACCTGTGTTGTTTTCTCGGTCTCCATCTTTTCAGGTTTCTGTCCTGTTTCCCCATCTCTTTCGACCCTAGCTCGC-TCTCGCGCAGGCTctca----------------------cttgctct----ctctctctctggtcttCCATGTCTCTCAGTCTTTGTATTTCCTGCCTCTTTCTGCATCACTGATTCTCTGacccttcccctcctctcagcCCTGGG--GTCCCCCTTCCCTCTCTGAACATAGAGCGACAGACCAGCTCTTCTCTCCAGGACTGTGGAGACATGCTGGTCTCAGTGGCCCA-CCTCCTGTCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782108 302 +  50890351 TCTGGGTTCCCATCTGTGTTGTTTTCTCGGTCTCCATCTTTTCAGGTTTCGGTCCTGTTTCCCCATCTCTTTTGACCCTAGCTCGC-TCTCGCGCAGGCTCTCA----------------------CTTGCTCT----CTATCTGTCTGGTTTTCCATGTCTCTCAGTCTCTGTATTTCCTGCCTCTTTCTGCATCACTGATTCTCTGACCCTTCCCCTCCTCTCAGCCCTGGG--GTCCCCCTTCCCTCTCTGAACATAGAGCGACAGACCAGCTCTTCTCTCCAGGACTCTGGAGACTTGCTGGTCTCAGTGGCCCA-CCTCCTGTCCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45350723 323 +  49145316 tctgggttgctgtctgtggagttctctcggtctccatctttacgggtttctgtcctgtttccccatctgttttgggggtctgtctc-tgtctcaccggttttccatgtctccagttttccatgtctctcggtct----ccatctctctggttttccatgtctctcggtctctgtctctCCCTGACTCTTCTGCATCACCGATTCTCCGATCCTTACCCTCCTCTCACCCCCTGGCATCTCCCTTTCCCTCTGTGAATATAAAGCGACCAA-CAGCTCTTCTCTCCAGG-CCCTGGAGACGTGCTGGTCTCAGCGGCCC--CCTCCTGTCCCA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619826 171 + 145441459 -----------------------------------------------------------TCCCAGTTCCTTT---------CTCTC-TGTTG---GAGAGATCT------------------------CCCTCA----C-------------TTCCCTGTGTCTTTGCGTCTGT------------------------TGAATCTCTGGCCCTCACTTTCCTTTT-TCCCTGGA-----------------------ATACAGACACAAACCAGCTGTTTTCTCCAGGACTCTGGAGAGCTGCTGCTCTCAGTGGCGCATCCTTCTGTTTTG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19579777 208 - 122678785 ------------------------TCTGGACTTTTGTCATTCTAGGTGTCTGTCCTGTT----------------------------T--------------------------------------------------CTGTCTCTCTGCTTTTCCGTACCTCCAGGTCTCTAT-CTCCCTGCTTCTCTCTGCATC-------------CCCTCTCTCACCTCTC--CTCTGGG--GTCCCATTTCTCTCTTTGAGTCCAAACTGACAGACTAGC----CTTTATGGGCCTCCCAAGACCTGTTGGTCTCAATGGCCCACCCTCCTGCCCCA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55890140 933 +  60714840 M

a score=653025.000000
s hg38.chr19_GL949751v2_alt     81227 154 +   1002683 CAGTGCCCGTCCGTGATGATGGGAACATGCCCGACGTGCCCAGCCACCCCCAGGACCCTCAGGGCCCCAGCCTGGAGTGGCTGAAGAAACTGTGAGCACCTCCACTGACA--GAGGCGGCCCCTCCCACG--GCTC-CCAATAAAAATGTGAAAACCAA
s panTro4.chr19              59014676 154 +  63644993 CAGTGCCCGTCCGTGATGATGGGAACATGCCCGACGTGCCCAGCCACCCCCAGGACCCCCAGGGCCCCAGCCTGGAGTGGCTGAAGAAACTGTGAGCACCTCCACTGACA--GAGGCGGCCCCTCCCACG--GCTC-CCAATAAAAATGTGAAAACCAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55891110 154 +  60714840 CAGTGCCCGTCCGCGATGATGGGAACATGCCCGACATGCCCAGCCACCCCCAGGACCCTCAGGGCCCCAGCCTGGAGTGGCTGAAGAAACTGTGAGCACCTCCACTGACA--GAGGCGGCCCCTCCCACG--GCTC-CCAATAAAAATGTGAAAACCAA
i ponAbe2.chr19             M 933 C 0
s nomLeu3.chr10             102656128 154 - 106955855 CAGTGCCCGTCCGCGATGATGGGAACATGCCCGACGTGCCCAGCCACCCCCAGGACCCTCAGGGCCCCAGCCTGGAGTGGCTGAAGAAACTGTGAGCACCTCCACTGACA--GAGGCGGCCCCTCCCACG--GCTC-CCAATAAAAATGTGAAAACCAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59939865 154 +  64156825 CAGTGCCCGCCCGTGATGATGGGAACATGCCGGACGCTCCCAGCCACCCCCAGGACCCTCAGGGCCCCAGCCCGGAGTGGCTTAAGAAACTGTGAGCACCTTCACTGACA--GAGGCGGCACCTCCCACG--GCTC-CCAATAAAAATGTGAACACCAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54943815 154 +  59248254 CAGTGCCCGTCCGTGATGATGGGAACATGCCGGACGTGCCCAGCCACCCCCAGGACCCTCAGGGCCCCAGCCTGGAGTGGCTTAAGAAACTGTGAGCACCTTCACTGACA--GAGGCGGCCCCTCCCACG--GCTC-CCAATAAAAATGTGAACACCAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47077228 154 +  51301725 CAGTGCCGGTCCGTGATGATGGGAACATGCCGGACGTGCCCAGCCACCCCCAGGACCCTCAAGGCCCCAGCCTGGAGTGGCTGAAGAAACTGTGAGCACCTTCACTGACA--GAGGCGGCCCCTCCCACG--GCTC-CCAATAAAAATGTGAACACCAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782410 154 +  50890351 CAGTGCCCGTCCGTGATGATGGGAACATGCCGGACGTGCCCAGCCACCCCCAGGACCCTCAGGGCCCCAGCCTGGAGTGGCTGAAGAAACTGTGAGCACCTTCACTGACA--GTGGCGGCCCCTCCCATG--GCTC-CCAATAAAAATGTGAAAAGCAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45351046 150 +  49145316 CAGTGCCTGTCCGCGATGATGGGAACATGCCCGACATACCCAGCCACCCCCAGGACCCCCAGGGACCCAGCCTGGAGTGGCTGAAGAACCTGTGAGCACCTCCACTGACC--AAGGCG----CACCCTCA--GCTC-CCAATAAAAATGTGAAAACCAA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3619997 157 + 145441459 CAGTGCCTGTGAGAGATGACGGGAACATGCCTGATGTGCCCAGCCACCCTCAGGATCCTCTGGGTCCAAGCTTGGACTGGCTGAAGAACCTGTGAATGCCTCTGCTGATG--GAAGAGGCCCCTTCCCTGTTGCTCTCCAATAAAAATGTGAAAACTAA
i mm10.chr7                 C 0 I 105
s canFam3.chr1               19579985 154 - 122678785 CAGTGCCCCTCCGAGATGATGGGAACATGCCCGACGTGCCCAGCCACCCCCAGGACCCCCAGGGCCCCAGTCTGGAGTGGCTGAAGAAATTGTGAGCACCTCTGGTGACATGGAGGTGGCCCCTTCC-CT--GTAG-TCAAT-AAAATGCATAGAGTGA
i canFam3.chr1              C 0 C 0

a score=720995.000000
s hg38.chr19_GL949751v2_alt     81381 177 +   1002683 CCCCCGAACGTG-AGCATGTGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCGGGGTGAGTGT------G-GGGTCAGTTTATTGGGCAT----GCGTCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTG
s panTro4.chr19              59014830 177 +  63644993 CCCAAGAACGTG-AGCATGTGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCGGGGTGAGTGT------G-GGGTCAGTTTACTGGGCAT----GCGTCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55891264 177 +  60714840 CCCCAGAACGTG-AGCATGCGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCGGGGTGAGTGT------G-GGGTCAGTTTACTGGGCAT----GGGTCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102656282 175 - 106955855 CCCCAGAACGTG-AGC--GTGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCGGGGTGAGTGT------G-GGGTCGGTTTACTGGGCAT----GGGTCAGTCAGAGGCTGGGCTGGCCAGGGTCAGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59940019 176 +  64156825 CCCCAGAGCGTG--GCATGTGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCAGGGTGAGTGT------G-GGCTCAGTTTATTGGGCAT----GGGTCAGTCAGAGGCTGGGCTGGCCAGAGTTGGGTAGGGCAGCAGTTTATCTGGACCCCGAGAAACCCAGCTGGAATCCAGGGCCTCATCTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54943969 176 +  59248254 CCCCAGAGCGTG--GCATGTGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCAGGGTGAGTGT------G-GGCTCAGTTTATTGGGCAT----GGGTCAGTCAGAGGCTGGGCTGGCCAGAGTTGGGTAGGGCAGCAGTTTATCTGGACCCCGAGAAACCCAGCTGGAATCCAGGGCCTCATCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47077382 176 +  51301725 CCCCAGAGCGTG--GCATGTGTGTGATCAGAGGTGGGAACAAGTAGACGGTGGCCAGGGTGAGTGT------G-GGCTCAGTTTACTGGGCAT----GGGTCAGTCAGAGGCTGGGCTGGCCAGAGTTGGGTAGGGCAGCAGTTTATCTGGACCCCGAGAAACCCAGCTGGAATCCAGGGCCTCATCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782564 176 +  50890351 CCCCAGAGCGTG--GCATGTGTGTGATCAGCGGTGGGAACCAGTAGACGGTGGCCAGGGTGAGTGT------G-GGCTCAGTTTACTGGGCAT----GGGTCAGTCAGAGGCTGGGCTAGCCAGAGTTGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAGCTGGAATCCAGGGCTTCATCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45351196 176 +  49145316 CCCCAGAATGTG-AGCATGTGTGTGATCAGAGGCGGGAACAGG-AGACGGTGGCCAGGGTGAGTGT------G-GGGTCAGTTTACTGGGCGT----GGGTCAATCAGAGGGTGGGCTGGCTAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGACACCCAACTGGAATCCAGGGCCTCGTCTG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3620259 184 + 145441459 cctccaacccTGGAACCTGGATATGATCAGAGGTGGGAGCAA-TAAACGGTGACCTAGACAAGTGTACATAGG-GAATCTGTTTATTGGGGAG---AGGGTTAGTCAAAGGGTGGGCTGGCCAGGGTAGGGTAGGGTAGCAATTTGTCTGGCTCTCGGGAAACCCAACTTGAATCCAAGGCCTCATCTG
i mm10.chr7                 I 105 C 0
s canFam3.chr1               19580139 174 - 122678785 CCCCAGCATCTG-AGCTTGAGTGTGATCAGAGGTGGAAACA--------GTGGCCAAGGCGAGTCT------GCCGGTGAGTTTATTGGGGGTGGGGGGGTCAGTCAAATGGGGGACTGGCTAGGGTGGGGTAGGGCAGCAGTTTGTCTGGCCCCCGAGAAACCCAACTGGAGTCCAGGGCCTCATCTG
i canFam3.chr1              C 0 C 0

a score=269691.000000
s hg38.chr19_GL949751v2_alt     81558 80 +   1002683 CTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTGCAGGAGATAAGGAACAAGGTGTTAACAGGCCTGGGAATCTAGAAAA
s panTro4.chr19              59015007 80 +  63644993 CTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTGCAGGAGATAAGGAACAAGGTGTTAACAGGCCTGGGAATCTAGAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55891441 80 +  60714840 CTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTGCAAGAGATAAGGAACAAGGTGTTAACAGGCCTGGGAATCTAGAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102656457 80 - 106955855 CTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTGCAGGAGATAAGGAACAAGGTGTTAACAGGCCTGGGAATCTAGAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59940195 80 +  64156825 CTTCAAAGCCAAAGTCTTCCTCGACCTTAATCTGCAGGAGAGAAGGAACAAGGTGTTAATAGGCCTGAGAATCCAGAAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54944145 80 +  59248254 CTTCAAAGCCAAAGTCTTCCTCGACCTTAATCTGCAGGAGAGAAGGAACAAGGTGTTAATAGGCCTGAGAATCCAGAAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47077558 80 +  51301725 CTTCAAAGCCAAAGTCTTCCTCGACCTTAATCTGCAGGAGAGAAGGAACAAGGTGTTAATAGGCCTGAGAATCCAGAAAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782740 78 +  50890351 CTTCAAAGCCAAAGTCTTCCTCGACCTTAATCTGCAG--GAGAAGGAACAAGATGTTAATAGGCCTGAGAATCCAGAAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45351372 75 +  49145316 CTTCAAAGCCAAAGTCTTCCTCGACCTTAATCTGCAGGAGAT----AACAAAGTGTTAGTCAG-CTGGGAATCTAGAAAA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3620443 78 + 145441459 CTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTG-AAAAGATACGGAACAAGATGCGAG-GGATATGGAGACCCAGGAGA
i mm10.chr7                 C 0 I 207
e canFam3.chr1               19580313  0 - 122678785 C

a score=301312.000000
s hg38.chr19_GL949751v2_alt     81638 118 +   1002683 TCCCATCAGCTTCACCAtttttgttttcattttgttttgctttttaaagagac-------agggtct-cactctgttgcccaggctggagtgcagtggtgccatcatagttcactgcagcctctgc
s panTro4.chr19              59015087 126 +  63644993 TCCCATCAGCTTCACCAtttttgttttcattttgttttgctttttaaagagactctttaaagagactccactctgttgcccaggctggagtgcagtggtgccatcatagttcactgcagcctctgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55891521 116 +  60714840 TCCCATCAGCTTCACCAtttttgttttcattttgttttgattttt--agagac-------agggtct-cactctgttgcccaggctggagtgcagtggtgccatcatagttcactgcagcctctgc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102656537 118 - 106955855 TCCCATCAGCTTCACCAtttttgttttcattttgttttgctttttaaagagac-------agggtct-cactctgttgccccggctggagtgcagtggtgccatcatagttcactgcagcctctgc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59940275 100 +  64156825 TCCCATCAGCTTCACCAtttttgtttttgttttgttttgatttttaaagagac-------agggtct-------------------ggagtgcagtggtgccatcacagttcactgcagcctctgc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54944225 100 +  59248254 TCCCATCAGCTTCACCAtttttgtttttgttttgttttgatttttaaagagac-------agggtct-------------------ggagtgcagtggtgccatcacagttcactgcagcctctgc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47077638 100 +  51301725 TCCCATCAGCTTCAccatttttgttttcgttttgttttgatttttaaagagac-------agggtct-------------------ggagtgcagtggtgccatcacagttcactgcagcctctgc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782818 100 +  50890351 TCCCATCAGTTTCACCAtttttgttttcattttgttttgattttcaaagagac-------agggtct-------------------ggagtgcagtggtgccatcacagttcactgcagcctctgc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45351447 118 +  49145316 TCCGATCAGCTTCACTGttttcgttttcattttgtttcgatttttaaagagac-------aggccct-cactctgttgcccaggctggagtgcagtggtgccatcatagtttactgcaggctctgc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3620521 207 + 145441459 I
e canFam3.chr1               19580313   0 - 122678785 C

a score=1224062.000000
s hg38.chr19_GL949751v2_alt     81756 444 +   1002683 ctcccaggctcaagtgatcctcccacctcagcttcccaagtagctgggactacaggcacttgccaaccaagcctaacatg-ttttttctttt--------------tggtagagatggg-gtctcagtatgttgctcaggcaggtctcagactcctggcctcaagtgatcctcccacctaggcctcccaaagtgccgggattacaggcatgagccactgcacctggccAGCCTCACAGTTCTTGTCTGCCCAGGCCAGTCACCTTCCTCCTTACACCTCAGAGGCAATCCCAGTGTTCCTGGGTCCAGATGTTCTTCCAGCTTTCCTCCCCACACTGGGCCTTCCCTTCCACTCCGTCTTCTC------------TGATCCTTCCTTCTCCTCTACTCCCAGCCTTCTCTA-------GCTATTTTTCCTTCTCCAGGTCTTCCTCTTTCCCTTTCCAACTTTGCC-TCCTTTTT-ACCCA
s panTro4.chr19              59015213 440 +  63644993 ctcccaggctcaagtgatcctcccacctcagcttcccaagtagctgggactacaggcacttgccaaccaagcctaacatg-ttttttctttt--------------tggtagagatggg-gtctcagtatgttgctcaggcaggtctcagactcctggcatcaaatgatcctcccacctaggcctcccaaagtgctgggattacaggcatgagccactgcacctggccAGCCTCACAGTTCTTGTCTTCCCAGGCCAGTCACCTTCCTCCTTACACCTCAGAGGCAATCCCAGTGTTCCTGGGTCCAGATGTTCTTCCAGCTTTCCTCCCCACACTGGGccttcccttccactccgtcttctc------------tga----tccttctcctctactcccagccttctcta-------gctatttttccttctccaggtcttcctctttccctttcCAACTTTGCC-TCCTTTTC-ACCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55891637 452 +  60714840 ctcccaggctcaagtgatcctcccatctcagcttcccaagtagctgggactacaggcacatgccaaccaagcctaacatgtttttttctttt--------------tggtagagatggg-gtctcagtatgttgctcaggcaggtctcaaactcctggcatcaagtgatcctcccacctaggcctcccaaagtgctgggattacaggcatgagccactgcacctggccAGCCTCGCAGTTCTTGTCTTCCCAGGCCAGTCACCTTCCTCTTTACACCTCAGAGGCAATCCCAGTGTTCCTGGGTCCAGATGTTCTTCCAGCTTTCCTCCCCGCACTGGGCCTTCCCTTCCACTCCATCTTCTC------------TGATCCTTCCTTCCCCTCTACTCCCAGCCTTCTATAGCTATCTGCTATTTTTCCTTCTCCAGGTCTTCCTCCTTCCCTTTCCAACTTTGTC-TCCTTTTT-ACCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102656655 433 - 106955855 ctcccaggctcaagtgatcctcccacctcagcttcccaagcagctgggactacaggcacatgccaaccaagcctaacatgtttttttctttt--------------tggtagagatggg-gtctcagtatgttgctcaggcaggtctcaaactcctggcatcaagtgatcctcccacctaggcc------------gggattacaggcatgagccactgcacctggccAGCCTCGCAGTTCTTGTCTTCCCAGGCCAGTCACCTTCCTCCTTACACCTCAGAGGCAACCCCAGTGTTCCTGGGTCCAGATGTTCTTCCAGCTTTCCTCCCCGCACTGGGCCTTCCCTTCCACTCCGTCTTCTC------------TGATCCTTCCTTCTCCTCTACTCCCAGCCTTCTATA-------GCTATTTTTCCTTCTCCAAGTCTTCCTCCTTCCCTTTCCAACTTTGCC-TCCTTTTT-ACCCA
i nomLeu3.chr10             C 0 I 284
s rheMac3.chr19              59940375 455 +  64156825 ctcccaggctcaagtgaccctcccacctcagcttcccaagcagctgggactacaggcacatgccaatcatgcctaacatgtttttttctttt--------------tggtagagatgggagtcacagtatgttgctcaggctagtctcaaactcctggcatcaagtggtcc-cccatgtaggcctcccaaagtgctgggattacagacatgggccactgcacccggccAGCCTCACCGTTCTTGTCTTCCTAGGCCAGTCACCTTCCTCCTCACACCTCAGA-GCAATCCCAGTGTTCCTGGGTCCAGATGTTCTTCCGGCTTTCCTCCCCGCACTGGGCCTTCCCTTCCACCCCATCTTCTCTGATCCTTCCTTTGATCCTTCCTTCTTCTCTACTCCTAGCCTTGTCTA-------GCTATTTTTCCTTCTCCAGGTCTTCCTCCTTCCCTTTCCAACTTTGCC--TCCTTTC-ACCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54944325 455 +  59248254 ctcccaggctcaagtgaccctcccacctcagcttcccaagcagctgggactacaggcacatgccaatcatgcctaacatgtttttttctttt--------------tggtagagatgggagtcacagtatgttgctcaggctagtctcaaactcctggcatcaagtgatcc-cccatgtaggcctcccaaagtgctgggattacagacatgggccactgcacccggccAGCCTCACCGTTCTTGTCTTCCTAGGCCAGTCACCTTCCTCCTCACACCTCAGA-GCAATCCCAGTGTTCCTGGGTCCAGATGTTCTTCCGGCTTTCCTCCCCGCACTGGGCCTTCCCTTCCACCCCATCTTCTCTGATCCTTCCTTTGATCCTTCCTTCTTCTCTACTCCTAGCCTTGTCTA-------GCTATTTTTCCTTCTCCAGGTCTTCCTCCTTCCCTTTCCAACTTTGCC--TCCTTTC-ACCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47077738 454 +  51301725 ctcccaggctcaagtgatcctcccacctcagcttcccaagcagctgggactacaggcacatgccaatcATGCctaacatgtttttttctttt--------------tggtagagatgggagtcacagtatgttgctcaggctagtctcaaactcctggcatcaagtgatcc-cccatgtaggcctcccaaagtgctgggattacagacatgggccactgcacccggccagcctCACCGTTCTTGTCTTCCTAGGCCAGTCACCTTCCTCCTCACACCTCAGA-GCAATCCCAGTGTT-CTGGGCACAGATGTTCTTCCAGCTTTCCTCCCCGCACTGGGccttcccttccaccccatcttctctgatccttcctttgatccttccttcttctctactcctAGCCTTGTCTA-------GCTATTTTTCCTTCTCCAggtcttcctccttccctttccaacTTTGCC--TCCTTTC-ACCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46782918 445 +  50890351 ctcccaggctcaaatgatcctcccacctcagcttcccaagcagctgggactacaggcacatgccaatcatgcctaacatgtttttttcttgt--------------tggtagagatgggagtcacggtatgtcgctcaggctggtctcaaactgctggcatcaagtgatcc-cccatgtaggcctcccaaagtgctgggattacggacatgggccactgcacccagccAGCCTCACCGTTCGTGTCTTCCTAGGCCAGTCACCTTCCTCCTCACACCTCAGA-GCAATCCCAGTGTTCCTGGGTCCAGATGTTCTTTCAGCTTTCCTCCCCGCACTGGGCCTTCCCTTCCACCCCATCTTCTC------------TGATCCTTCCTTCTCCTCTACTCCTAGCCTTGTCTA-------GCTATTTTTCCTTCTCCAGGTCTTCCTCCTTCCCTTTCCAACTTTGCCCTCCTTTTC-ACCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45351565 453 +  49145316 ctcccaggctcaagtgatcctcccacctcaccctcccaagtagctgggactacaggcacgggccaaccaagccgacccttttttttttttttttttttttctttcctggtagagatgag-gtctcagtatgttgctcagggagatctcaagctcttggcctcaagtgaacctccctcctgggcctcccagagtgctgggattacaggcctgagccactgcacctggccATCCTCACTGTTCTAGTCCTGCCAGGCCGGTCGGCTTCCTCCTTATACCTCAGAGGTAATCCCAGTGTTCCTGGGTCCAGATGCTCTTCCGACTTTCCTCCCCTAACT-GGccttctcttccgccctctctt---------------tgacccctccctctcctctcctcccagccttctcca-------gtta-ctttccttctccaggtctt-ctccttccctttcCAACTTTGCC-TCCTTTTCTACCC-
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19580313 235 - 122678785 CTTCGAAGCCAAAGTCTTCCTC-------------------------GAC---------------------CTTAATCTG--------------------------GGGGAGAGAAGGA-GCCA---------GCGTAAGCAGGCCTAGAAT--------------------CTCGAGAAGGCC-------------------CAG---------------------CAGCTTCACCATTC--AACCTCC--------TCAACTTCCTCTGTGCACCTGGGA-GAAATCCCAATGGTCCC--------------------------------------ACCTTCCCTTCCAC-CCATGTTCTC------------TGA-CCCTCCTGCTA-------CCCACCCACCCCCA-------GCT--------TCCTCCAGATCGCTCTCCTTCCTTTTCCATCCA-------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3620521 207 + 145441459 I

a score=512570.000000
s hg38.chr19_GL949751v2_alt     82200 197 +   1002683 AGCCTTTACCCCACTTTTTCCAACTA------CTTCCCTGCCTGATCCTAGG---CCTCCAACATGTCCTGGTTCACCTCCCTTCTCCAACTTTCCCCAGCCCTGGGCCCCTCGGGGTGCAGAACCAAAACCCAAGAGCCCTGAACCTAACTCAGCCCCAGCCCT------GGCCCCTCCCCTTGAGTCCCCC-CTCC---TTACCTGCACTGGCG
s panTro4.chr19              59015653 197 +  63644993 AGCCTTTACCCCACTTTTTCCAACTA------CTTCCCTGCCTGATCCTAGG---TCTCCAACATGTCCTGGTTCACCTCCCTTCTCCAACTTTCCCCAGCCCTGGGCCCCTCGGGGTGCAGAACCAAAACCCAAGAGCCCTGAACCTAACTCAGCCCCAGCCCT------GGCCCCTCCCCTTGAGTCCCCC-CTCC---TTACCTGCACTGGCG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55892089 204 +  60714840 AGCCTTTACCCCACTTTTTCCAACTA------CTTCCCTGCCTGATCCTAGG---CCTCCAACATGTCCTGGTTCACCTCCCTTCTCCAACTTTCCCCAGCCCTGGGCCCCTCGGGGTGCAGAACCAAAACCCAAGAGCTCTGAACTTGActcagccccagccctggccccggcccctccccttgagtcccccgctcc---ttacctgcactagcg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102657372 204 - 106955855 aGCCTTTACCCCACTTTTTCCAACTA------CTTCCCTGCCTGATCCTAGG---CCTCCAACACGTCCTGGTTCACCTCCCTTCTCCAACTTTCCCCAGCCCTGGGCCCCTCGGGGTGCAGAACCAAAACCCAAGAgccctgaacctgactcagccccagccctggccccggcccCTCCCCTTGAGTCTCCCCCTCC---TCACCTGCACTGGCG
i nomLeu3.chr10             I 284 C 0
s rheMac3.chr19              59940830 202 +  64156825 AGCCTTTGCCCCACTTTTTCCAAATA------CTTCCCTGCCTGATCCTAGG---CCTCCAACACATCCTGGTT-ACCTCCTTTCTTCAACTTTCCCCAGCCCTGGACCCCTCAGGGTGCAGAACCAAAACCCAAGAGCCCTGAACCTGACTCAG-CCCAGCCCTGGCCCTAGCCCCTCCCCTTGAGTCCCCCCCTCC---TCACCTGCACCGGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54944780 202 +  59248254 AGCCTTTGCCCCACTTTTTCCAAATA------CTTCCCTGCCTGATCCTAGG---CCTCCAACACATCCTGGTT-ACCTCCTTTCTTCAACTTTCCCCAGCCCTGGACCCCTCAGGGTGCAGAACCAAAACCCAAGAGCCCTGAACCTGACTCAG-CCCAGCCCTGGCCCTAGCCCCTCCCCTTGAGTCCCCCCCTCC---TCACCTGCACCGGAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47078192 208 +  51301725 AGCCTTTGCCCCACTTTTTCCAACTA------CTTCCCTGCCTGATCCTAGGCCTCCTCCAGCACATCCTGGTT-ACCTCCTTTCTTCAACTTCCCCCAGCCCTGGGCCCCTCAGGGTGCAGAACCAAAACCCAAGAGCCCTGAACCTGACTCGG-CCCAGCCCTGGCCCTAGCCCCTCCCCTTGAGTccccccccccccGTCACCTGCACCGGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46783363 203 +  50890351 AGCCTTTGCCCCACTTTTTCCAACTA------CTTCCCTGCCTGATCCTAGG---CCTCCAACACATCCTGGTT-ACCTCCTTTCTTCAACTTTCCCCAGCCCTGGGCCCCTCAGGGTGCAGAACCAAAACCCAAGAGCCCTGAACCTGACTTGGCCCCAGCCCTGGCCTCAGCCCCTCCCCTTGAGTCCCCCCCTCC---TCACCTCCACCGGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45352018 123 +  49145316 AGCCTTTGCCCCACTTTTTCCAGCTA------CCTCCCTGCCTGATCCTAGG---CTTCCAACACTTCCTGTTTCACCACCTTTCTCCAACTTG-CCCAGCC----------------------------CCCAAGAGCCCTGAACTTGATTCCG-CCCAGC------------------------------------------------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19580548 158 - 122678785 AGCCCTCACCTGGCTTCTTCCAGCTCTTTATTCTTCCCTGCCCA-----------CCCCCACCTCTCCCAGCCCCACCTCCTTTCTCCAGTTGTCCCTtgccctgagctt---------------------------gtcctgagcct------------gccctgagcctgAATGCTCTAC--AAGGCCCAGCTCCC---ACAACACTGCTG---
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3620521 207 + 145441459 I

a score=2615560.000000
s hg38.chr19_GL949751v2_alt     82397 761 +   1002683 CCGGCTCTGGAGC----------------------------------------------------------CCCAGTCCCTCCCCTTGAGTTCCCGC-CTTC----CTCACCTGCACCGGGGCCAGCTCTGGAGTCAGCGCATTTCCTGCTCGGCGTCCATCCCGTGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCACCGGGGGCTGGGCTGCCGGGTTCTGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGTCTCTTTCTCTGGAGGCTCATTCTCCGCATTGCCTGGGGTGGGGGCATCCGTGCCCTGGCTGCCCTCATCCTGGCAGGCAGGAGGGGGAGGTAGGTGATGGGTGGGTCCTGA--------------GCTCCCAGT--TCCTGACCCTCCTGGAGGCCCAACACTCACCTCCAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCGTAGGAGTCCAGCACTCTCATGAGGAACCTGCTCAGGGGGAGAAGCCACC---AACGGAATAACTT-ATCTCCTAGCGGCTGGGGAAAAGGGCCACAGGATAGAGCTCAGCTCCCACTCCACTCAACGCCAAAGCTGTCc--------tggagccagacggtcctgagctctggcactggaggcctgggagccatgcc-cttgaccagccttgagacctcgagcaagacaaggcaaccattctgaggctgagtttcctgctctgc--aaacgaca--tgacaccctc-----ggctggatgttgcagcggtgacactgaagtagtgacaccagacgatttct----gta-----cttaatgtga-tgtcagc---acttagtaaacattcatatgtgagttataa-t
s panTro4.chr19              59015850 761 +  63644993 CCAGCTCTGGAGC----------------------------------------------------------CCCAGTCCCTCCCCTTGAGTTCCCGC-CTTC----CTCACCTGCACCGGGGCCAGCTCTGGAGTCAGTGCATTTCCTGCTCGGCGTCCATCCCGTGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGGGCTGGGCTGCCGGGTTCTGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAATGTCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGGGCATCCGTGCCCTGGCTGCCCTCATCCTGGCAGGGAGGAGGGGGAGGTAGGTGATGGGTGGGTCCTGA--------------GCTCCCAGT--TCCTGACCCTCCTGGAGGCCCAACACTCACCTCCAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCGTAGGAGTCCAGCACTCTCATGAGGAACCTGCTCAGGGGGAGAAGCCACC---AACGGAATAACTT-ATCTCCTAGCGGCTGGGGAAAAGGGCCACAGGATAGAGCTCAGCTCCCACTCCACTCAACGCCAAAGCTGTCC--------tggagccagacggtcctgagctctggcattggaggcctgggagccatgcc-cttgaccagccttgagacctcaagcaagacaaggcgaccattctgaggctgagtttcctgctctgc--aaacgaca--tgacaccctc-----ggctggatgttgcagcggtgacactgaagtagtgacaccagacgatttct----gta-----cttaatgtga-tgtcagc---acttagtaaacattcaTATGTGAGTTATAA-T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55892293 819 +  60714840 ccagctctggagctccagtccctccccttgagtccctgcctcctcacctgcactggcaccagctctggagtcccagtcccTCCCCTTGAGTTCCCAC-CTTC----CTCACCTGCACTGGGGTCAGCTCTGGAGTCAGCGCATTTCCTGCTCGGCGTCCATCCCGTGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGGGCTGGGCTGCCAGGTTCTGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGGGCATCTGTGCCCTGGCTGCCCTCATCCTGGCAGGGAGGAGGGGGGGGTAGGTGATGGGTGGGTCCTGA--------------GCTCCCAGT--TCCTGACCCTGCTGGAGGCCCAACACTCACCTCCAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCATAGGAGTCCAGCACTCTCATGAGGAACCTGCTCAGGGGGAGAAGCCACC---AATGGAATAACTT-ACGTCCTATCAGCTGGGGAAAAGGGCCACAGAATCGAGCTCAGCTCCCACTCCACTCAACGCCAAAGCCGTCC--------tggacccagacggtcctgagctctggcattggaggcctgggagccatgcc-cttgaccagccttgagacctcgagccagacaaggcgaccattctgaggctgagtttcctgctctgc--aaacgaca--tgacaccctc-----ggctggatgttgcaatggtgacactgaagtagtgacaccagacgatttct----gta-----cttaatgtga-tgtcagc---acttagtaaacattcatatgtgagttgtaa-a
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102657576 760 - 106955855 CCAGCTCTGGAGC----------------------------------------------------------CCCAGTCCCTCCCCTTGAGTTCCCAC-TTTC----CTCACCTGCACCGGGGCCAGCTCTGGAGTCAGCGCATTTCCTGCTCGGCGTCCATCTCGTGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGGGCTGGGCTGCCAGGTTCTGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGGGCATCTGTGCCCTGGCTGCCCTCATCCTGGCAGGGAGGAGGGGGAGGTAGGTGATGGGTGGGTCCTGA--------------GCTCCCAGT--TCCTTACCCTCCTGGAGGCCCAACACTCACCTCCAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCATAGGAGTCCAGCACTCTCATGAGGAACCTGCTCAGGGGCAGAAGCCACC---AATGGAATAACTT-ATCTCCTAGCAGCTGGGGAACAGGGCCACAGGATAGAGCTCAGCTCCCACTCCGCTCAGCGCCAAAGCTGGCC--------tggacccagacggtcctgagctctggcactggaggcctgggagccatgcc-cttgaccagccttgagacctcgagcaagacaaggcgaccattctgaggct--gtttcctgctctgc--aaacgaca--tgacaccctc-----ggctggatgttgcagtggtgacactgaagtagtgacaccagacgatttct----gta-----cttaacatga-tgtcagc---acttagtaaacattcatatgtgagttataatt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59941032 765 +  64156825 CCAGCTCTGGGGC----------------------------------------------------------CCCGGTCGCTCCCCTTGAGTCCCCCCACTTC----CTCACCTGCACTGAAGCCAGCTCTGGAGTCAGTGCAGTTCCCACTCGGCGTCCATCCCGCGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGCGCTGGGCTGCCAGGTTCCGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGAGCATCCGTGCCCTGGCTGCCCTCATCCTGGCGGGGAGGAGGGGGAGGTAGGTGATGGCTGCGTCCTGG--------------GCTCCCAGT--TCCTGACCCTCCTGGAGACCCAACACTCACCTCTAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCATAGGAGTCCAGCACCCTCATGAGGAACCTGCTCAGGGGGAGAAGCCACC---AATGGACTCAGTT-ACCTCCTAGCAGCT-GGGAAAAGGGCCACAAGATAGAGCTCAGCTCTCACCCCACTCAACACCAAAGCTGTCC--------TGGACGCAGACGGTCCTGAGCTCTGGCATTGGAGGCCTGGGAGCCACGCC-CTTGACCCGCCTTGAGACCTCAAGCAAGACAAGACGACCATTCTGAGGCTGAGTTTCCTGCTCTGC---AACGACG--TGAAACCCTCACCTGGGCTGGATGTTGCAGTGGTGACACCGAAGTAGTGACACCAGACGATTTCT----GTA-----CTTGCTGTGA-TATCGGC---ACTCAGTAAACATTGATATGTGAGTTATCA-T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54944982 765 +  59248254 CCAGCTCTGGGGC----------------------------------------------------------CCCGGTCGCTCCCCTTGAGTCCCCCCACTTC----CTCACCTGCACTGAAGCCAGCTCTGGAGTCAGTGCAGTTCCCACTCGGCGTCCATCCCGCGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGCGCTGGGCTGCCAGGTTCCGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGAGCATCCGTGCCCTGGCTGCCCTCATCCTGGCGGGGAGGAGGGGGAGGTAGGTGATGGCTGCGTCCTGG--------------GCTCCCAGT--TCCTGACCCTCCTGGAGACCCAACACTCACCTCTAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCATAGGAGTCCAGCACCCTCATGAGGAACCTGCTCAGGGGGAGAAGCCACC---AATGGACTCAGTT-ACCTCCTAGCAGCT-GGGAAAAGGGCCACAAGATAGAGCTCAGCTCTCACCCCACTCAACACCAAAGCTGTCc--------tggacccagacggtcctgagctctggcattggaggcctgggagccacgcc-cttgacccgccttgagacctcaagcaagacaagacgaccattctgaggctgagtttcctgctctgc---aaCGACG--TGAAACCCTCACCTGGGCTGGATGTTGCAGTGGTGACACCGAAGTAGTGACACCAGACGATTTCT----GTA-----CTTGCTGTGA-TATCGGC---ACTCAGTAAACATTGATATGTGAGTTATCA-T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47078400 766 +  51301725 CCAGCTCTGGGGC----------------------------------------------------------CCCGGTCGCTCCCCTTGAGTCCCCTCACTTC----CTCACCTGCACTGAAGCCAGCTCTGGAGTCAGCGCAGTCCCTGCTCGGCGTCCATCCCGCGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGCGCTGGGCTGCCAGGTTCTGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGAGCATCCGTGCCCTGGCTGCCCTCATCCTGGCGGGGAAGAGGGGGAGGTAGGTGATGGCTGCGTCCTGG--------------GCTCCCAGT--TCCTGACCCCCCTGGAGGCCCAACACTCACCTCTAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCATAGGAGTCCAGCACTCTCATGAGGAACCTGCTCAGGGGGAGAAGCCACC---AATGGACTAAGTT-ACCTCCTAGCAGCTGGGGAAAAGGGCCCCAGGATAGAGCTCAGCTCTCACCCTACTCAACACCAAAGCTGTCC--------TGGACCCAGACGGTCCTGAGCTCTGGCACTGGAGGCCTGGGAGCCACGCC-CTTGACCAGCCTTGAGACCTCCAGCAAGACAAGACGACCATTCTGAGGCTGAGTTTCCTGCTCTGC---AACGACA--TGAAACCCTCAACTGGGCTGGATGTCGCAGTGGTGACACTGAAGTAGTGACACCAGACGATTTCT----GTA-----CTTACTGTGA-TGTCGGC---ACTCAGTAAACGTTGATATGTGAGTTGTCA-T
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46783566 758 +  50890351 CCAGCTCTGGGGC----------------------------------------------------------CCCGGTCCCTCCCCTTGAGTCCCCCGACTTC----CTCACCTGCACCGAAGCCAGCTCTGGAGTCAGCGCAGTTCCTGCTCGGCGTCCATCCCGCGGCACTCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCGGGCGCTGGGCTGCCAGGTTCTGGGGGTGCAGGAGTCCTTCTGGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTGCCTGGGGTGGGAGCATCCGTGCCCTGGCTGCCCTCATCCTGGTGGGGAGGAGGGGGAGGTAGGTGAAGGCTGCGTCCTGG--------------GCTCCCAGT--TCCTGACCCTCCTGGAGGCCGAACACTCACCTCTAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCATAGGAGTCCAGCACTCTCATGAGGAACCTGCTC-GGGGGAGAAGCCACC---AATGGAGTAAGTT-ACCTCCTAGCAGCT-GGGGAAAGGGCCACAGGATAGAGCTCAGCTCTCACCCCACTCAACACCAAAGCTGTCC--------tggacccagacggtcctgagctc------tggaggcctgggagccacgcc-cttgaccagccttgagacctcaagcaagacaagacgaccattctgaggctgagtttccagctctgc---aaagaca--tgaaaccctcaactgggctggatgttgtagtggtgacactgaagtagtgacaccagacgatttct----gta-----cttattgtga-tgtcggt---acttagtaaacattcatatgtgagttatca-t
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45352141 709 +  49145316 -----------------------------------------------------------------------CCCAGTCCCTCCCCTTGAGTTTCCCC-CTTC----CTCACCTGCACTGGTGCCAGCTCTGGAGTCAGCGCAGTTCCTGCTCGACGTCCATCCCGTGGTACTCGCCTCCTCTTCCGCCCACTGGGCCCCTCGACGGGGACTGGGCTGCCAGGTTCTGGGGGTGCAGGAGTCCTTCTCGGCGGGGACAGTGCCTCTTTCTCTGGAGGCTCATTCTCAGCATTACCTGGGGTGGGAGCATCTGTGCCCTGGCTGCCCTCATCCTGGCAGGGAGGAGCAGGAGGTGGGTGATGG-TGTATCCTGG--------------GCTTCCAGT--GCCTGACCCTCCTGGAGACCCAGCACTCACCTCCAGCACAATGGTGAACTGGCTGGCCCGGTAGTCATCCCCGTAGGAGTCCAGCACTCTCATGAGGAACCTGCTCAGGG--AGAAGCCACC---GATGGAATGAGTTAATCTCCTAGCAGTTGGGGAA---------------GAGCTCAGTTCCCGCTCCACTCGAAGCGAAAGCTGTCC--------TGGACCCGGGAGGTCCTGAGCTctggctttggaggcctgg---------------------------------agcgagacaaggcaaccattctgaggctgagtttcctgctctgc--agacgggc--tgacagccttgactgcactgggtgctgcagtggggacactgacgcagtgacaccagcggatttct----gtaaagtgcttcatgtgg-tatcggc---acttaggaaacgttcatatgggagttcGAt-t
i calJac3.chr22             C 0 I 307
s mm10.chr7                   3620728 682 + 145441459 CCAGCCCAGGATT----------------------------------------------------------CTCA---CCACGCCTTG-GCCCCAGC-CCTCGGCTCCCACCTGCACTGGGGCCAGTTCTGGAGTCAATGAAGCCCCCA------------CCCGTGGCGCCCGCCGCCTCTTCCGCCCACTGGGCCCCTCGCCAGGGGCTGGGCTGGTGGGGTCTAAGGTTGCAGTTGTCCTTTGGGATGGGGAAAGCCCCTCTTTCTCTGGAGGTTCATTCTCAGCATTGCCTGGGGTAGGGACATCTGTGCCTTGGCTGCCATCATCCTGGTAAGATGTAACATGGTGGCGGTTAAAGAC---TCCTGG--------------ATTCCCCATCCTCCCAACCTGCTTGGAGACC-AGAGCTCACCTCCAACACAATGGTGAACTGGCTATCTCGGTAGTCATCCCCGTAGGAGTCCAGCACCCTCATGAGGAACCTGTGTGGATGGAGATGCAGGC---ACTGAAA-ATCTT-ATCTTCTGA------GGGAGTACG--TAAAAGATA-AGTCCAGGTCTC------TTCAAT-CTAAAGTTCGCT--------TGAACTAGAAAGGTTTAGACCTCT-------GTAGCCTGAGCTC------------CCAGCCTGGGAACC------------AGTTGACC---------CCAAGTCTCCTACAC------AATGATAGGTGACATCCTTTACTGGGTTAGGTGCTGTGAAGGT-ATACTACA----------TAGACTATTCTCTAAAGTA-----CACAGTGTGATTGTTAGC---ATCTAGTAAACGTTCA------AATTGTAA-T
i mm10.chr7                 I 207 I 2
s canFam3.chr1               19580706 733 - 122678785 CAAAACCCAAGGC----------------------------------------------------------CCTGGT-----------------------------CCCACCTGTACCGGGGCTAGTTCTGGAGTGAGCACAGCTCCCGCTCGGCGTCCGTCCCGGGGTGCTCGCCGCCTCTTGCGTCCACTGGGCCCCTCCCCGGGGGTTGGGCTGCTGGGTTCTGGAGGTGCGGGTGTCCTTCGGGGTGGTGACAGCCCCTCTTTCTCTGGGGGCTCATTCTCAGCATTGCCGGGAGTGGGAGCATCTGTGCCCTGGCTGCCCTCGTCCTGGTGGGGAGAAG-GGGTGGCAGGTGAAGGCTGTGTCCTGGTGCCCTGTCCCCCCACACCCACC--CCCCTGCCTGCCAGGAGGCC--ATGCTCACCTCCAGGACTATGGTGAGCTGGCTGGCACGGTAGTCATCGCCATAAGCATCCAGCACTCTCATGAGGAACCTGCGTCCGGAGAGAGGCCATTGGGGAGGCACAACCTC-AGTATCTGGTGGTTGGAGAAAGGGGCGCCCG---ACAGCCCAGCCCCAGCTCA----GAAGCCAAGGCTGTCCCAGACCCATAAACCCAGAAGATTCAGAGCTGCCAAATCTGAGACCTGGTTGCCAAGTAGTTTGAGCAGCA-GGGGACATTGGGCCAGACCAGGGGACCTCTCTGCACCT--GTTTCCCGCTCTGTTGACAGGACA--CGACAGCCCTGAGTGGGTGGGCCACCTGAG-GGTGACACTGCA-------------------TCT----GGA---------GAGTGG-CATCTGCTGTGCTCAGCCCACGTTCTGGTGTCAGCTAT----
i canFam3.chr1              C 0 C 0

a score=38216.000000
s hg38.chr19_GL949751v2_alt     83158 17 +   1002683 tTTTATTGATAACTGAA
s panTro4.chr19              59016611 17 +  63644993 TTTTATTGATAACTGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55893112 17 +  60714840 ttttattGATAGCTGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102658336 17 - 106955855 ttttattGATAACTGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59941797 15 +  64156825 TTTTATTGATCACTG--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54945747 15 +  59248254 TTTTATTGATCACTG--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47079166 15 +  51301725 TTTTATTGATCACTG--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46784324 12 +  50890351 ttttattGATAA-----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45353157 17 +  49145316 TTTTTTTGATAACTGAA
i calJac3.chr22             I 307 I 6
s mm10.chr7                   3621412 17 + 145441459 TGGTAATGAAGACTGAA
i mm10.chr7                 I 2 I 2960
s canFam3.chr1               19581439 16 - 122678785 CTTTATTAGTAACTGA-
i canFam3.chr1              C 0 C 0

a score=253793.000000
s hg38.chr19_GL949751v2_alt     83175 91 +   1002683 GAGAGGGGAGTACAGAACGCTCCTCCTAATGACCTCACCTCTTATAAACACCCCCTTCTCTTTTTTCCCCAGCCCCTGCCTC-CAGAGTTCC
s panTro4.chr19              59016628 91 +  63644993 GAGAGGGGAGTACAGAACGTTCCTCCTAATGACCTCACCTCTTATAAACACCCCCTTCTTTTCTTTCCCCAGCCCCTGCCTC-CACAGTTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55893129 91 +  60714840 GAGAGGGGAGTACAGAACGCTCCTCCTAATGACCTCACCTCTTATAAACACCCTCTTCTCTTCTTTCCCCAGCCCCTGCCTC-CAGAGTTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102658353 91 - 106955855 GAGAGGGGAGTACAGAACGCTCCTCCTAATGACCTCACCTCTTATAAACACCCCCTTCTCTTCTTTCCGCAGCCCCTGCCTC-CAGAGTTCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59941812 88 +  64156825 AAGAGGGGAGTGCAGAACG---CTCCTAATGACCTCACCTCTTATCAACACCCCCTTCTCTTCTTTCCCCAGCCCCTGCCTC-CAGAGATCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54945762 88 +  59248254 AAGAGGGGAGTGCAGAACG---CTCCTAATGACCTCACCTCTTATCAACACCCCCTTCTCTTCTTTCCCCAGCCCCTGCCTC-CAGAGATCC
i macFas5.chr19             C 0 I 326
s papAnu2.chr19              47079181 88 +  51301725 AAGAGGGGAGTGCAGAACG---CTCCTAATGACCTCGCCTCTTATCAACAcccccttctcttctttccccagcccctgcctc-cagaagcct
i papAnu2.chr19             C 0 I 327
s chlSab2.chr6               46784336 88 +  50890351 GAGAGGGGAGTGCAGAACG---CTCTTAATGACCTCGCCTCTTATCAACACCCCCTTCTCTTCTTTCCCCAGCCCCTGCCTC-CAGAGATCC
i chlSab2.chr6              C 0 I 6
s calJac3.chr22              45353180 85 +  49145316 CAGAGGGGAGTGCAT-ACA---CTTCTGATGACCTTGCCTTTTATCAACACTGGCTTCTGTTTTT--CCCAGTCCCTGCCTC-CAGAGTTCC
i calJac3.chr22             I 6 I 6
s canFam3.chr1               19581455 71 - 122678785 ---AGGGCAAGACAAAGAG---C--------------CCTCCTGCTGACATGACCTTCTCTGCTT-CCCTGGTCCCTGCTTCTCAGAGCTCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3621429 2960 + 145441459 I

a score=79888.000000
s hg38.chr19_GL949751v2_alt     83266 48 +   1002683 TTAAGGTTC-AATTGATGGA--ATGCCTCCTCTGCACCAGCACCTGGGC-AG
s panTro4.chr19              59016719 48 +  63644993 TTAAGGTTC-AATTGATGGA--ATGCCTGCTCTGCACCAGCACCTGGGC-AG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55893220 49 +  60714840 TTAAAGTTCTAATTGATGGA--ACGCCTCCTCTGCACCAGCACCTGGAC-AG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102658444 51 - 106955855 TTAAAGTCCTAGTTGATGGAATATGCCTCCTGTGCACCAGCACCTGGGC-AG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59941900 20 +  64156825 TTAGttttttttttt--------tgttt------------------------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54946176 49 +  59248254 TTAAAGCTCTAATTGATGGG--ATGCTTCCCCCGCACCAGCGCCTGGGC-AG
i macFas5.chr19             I 326 C 0
s papAnu2.chr19              47079596 49 +  51301725 TTAAAGCTCTAATTGATGGG--ATGCTTCCTCCGCACCAGCGCCTGGGC-AG
i papAnu2.chr19             I 327 C 0
s chlSab2.chr6               46784430 49 +  50890351 TTAAAGCTCTAATTGATGGG--ATGCTTCCTCTGCGCCAGCGCCTGGGC-AG
i chlSab2.chr6              I 6 C 0
s calJac3.chr22              45353271 50 +  49145316 TTAAAATTCTAATTGATGGA--ATGCTTCCTCTGCACCAGCGCCTGGACAAA
i calJac3.chr22             I 6 C 0
s canFam3.chr1               19581526 31 - 122678785 ------------------GA--ATGCTATCTGGGGGCAAGCACCTGGGT-GG
i canFam3.chr1              C 0 I 2773
e mm10.chr7                   3621429 2960 + 145441459 I

a score=602823.000000
s hg38.chr19_GL949751v2_alt     83314 241 +   1002683 Gtttgttgttgttgttttgcgacggaatctcactctgtcacccaggctggagtgcagtggcgtgaatttggctcaccacaacctccacctccctggtaccagcgattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccactacacccggctaatttttttgta---tttttagtagagacggagtttcaccgtgttagccaggatggtcccgatctcctgacctc--gtgat
s panTro4.chr19              59016767 241 +  63644993 Gtttgttgttgttgttttgagacggaatctcactctgtcgcccaggctggagtgcagtggcgtgaatttggctcaccacaacctccacctccctggtaccagcgattttcctgcctcggcctcccgagtagctgggactacaggcgcccgccactacgcccggctaatttttttgta---tttttggtagagacggagtttcaccgtgttagccaggatggtcccgatctcctgacctc--gtgat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55893269 241 +  60714840 Gtttgttgttgttgttttgagacagaatctcactctgttgcccaggctggagtgcagtggcgtgatcttggctcaccacaacctccacctccctggttccagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccactacgcccggctaatttttttgta---tttttagtagagacggagtttcaccgtgttagccagaatggtctcgatctcctgacctc--gtgat
i ponAbe2.chr19             C 0 I 287
s nomLeu3.chr10             102658495 238 - 106955855 GT---TTGTTGTGGttttgagacggaatctcactctgttgcccaggctggagtgcagtggcgtgatctcggctcaccacaacctccacctccctggttccagcgattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccactacgcttggctaatttttttgta---tttttagtagagacagagtttcaccatgttagccaggatggtctggatctcctgacctc--atgat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59941920 236 +  64156825 -t------ttgtttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccacctcacccggctag-ttttttgtattttttttagtagagacggggtttcactgtgttagccaggatgctctcgatctcctgacctc--gtgat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54946225 235 +  59248254 Gt------ttgttgttttgaggtggaatctcattctgttgcccaggctggagtgcagtggtgtgatctcggctcaccacaacctccacctcccgggttcaagtgattctcctgcgtcagcctcccgagtagctgggattacaagcacctgcaaccatgcccagctaa--tttttgta---tttttagtagagacagggtttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47079645 235 +  51301725 Gt------ttgttgttttgaggtggaatctcattttgttgcccaggctggagtgcagtggtgtgatctcggctcaccacaacctccacctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggaatacaagcacctgcaaccacccccagctaa--tttttgta---tttttagtagagacagggtttccccgtgttggccaggctggtcttgaactcctgacctcaggtgat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46784479 238 +  50890351 Gt---ttgttgttgttttgaggtggagtctcattctgttgcccagactggagggcagtggcgtgatctcggctcaccacaacctccacctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaagcacctgcaaccatgcccagctaa--tttttgta---tttttagtagagacagggtttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45353321 231 +  49145316 Gttttttgtcgt--ttttgagacgaagtctcgctttgtctcccaggctggagtgcaatggcgcaatcttggctcacccccacctctgcctcctgggttgaagcgattctcctgcctcagcctcccaagtagctgggatgacaggtgcctg--------cctagctaa--tgtttgtg---tttttagtagagacgggttttccccatgttggccaggctgctattgaactcctgacctcaggtgag
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I

a score=173191.000000
s hg38.chr19_GL949751v2_alt     83555 61 +   1002683 ccgcctgcctcggcctcccaaagtgctgggattacaggcatgatgagccactgcgcccggc
s panTro4.chr19              59017008 61 +  63644993 ccgcctgcctcggcctcccaaagtgctgggattacaggcgtgatgagccactgcgcccggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55893797 58 +  60714840 ccgcctgcctcggcctcccaaagtgctaggattacaggcg---gaagccaccgtgcccagc
i ponAbe2.chr19             I 287 C 0
s nomLeu3.chr10             102658733 58 - 106955855 cctcctgcctcggcctcccaaagtgctgggattacaagcg---tgagccactgcgcccggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59942156 58 +  64156825 ccgcctgtctcggcctcccaaagtgctgggattacaggct---tgagccaccgcgcccggc
i rheMac3.chr19             C 0 I 2123
s macFas5.chr19              54946460 58 +  59248254 ccgcctgcctcggcctcccaaagtgctgggattacaggca---tgagccaccgcgcccggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47079880 58 +  51301725 ccgcccgcctcggcctcccaacgtgctgggattacaggtg---tgagccaccgcgcccggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46784717 58 +  50890351 ccgcctgcctcggcctcccaaagtgctgggattacaggca---tgagccaccgcgcccggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45353552 58 +  49145316 ccacctgcctcggcctcccaaagtgctcagattacaggcg---tgagccaccgtgcccggc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I

a score=2800.000000
s hg38.chr19_GL949751v2_alt     83616 1 +   1002683 c
s panTro4.chr19              59017069 1 +  63644993 c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55893855 1 +  60714840 c
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102658791 1 - 106955855 c
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54946518 1 +  59248254 c
i macFas5.chr19             C 0 I 1781
s papAnu2.chr19              47079938 1 +  51301725 c
i papAnu2.chr19             C 0 I 2426
s chlSab2.chr6               46784775 1 +  50890351 c
i chlSab2.chr6              C 0 I 1495
s calJac3.chr22              45353610 1 +  49145316 c
i calJac3.chr22             C 0 I 1458
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I
e rheMac3.chr19              59942214 2123 +  64156825 I

a score=964957.000000
s hg38.chr19_GL949751v2_alt     83617 597 +   1002683 TATTtcaacttaagtgaaaatctcacctgtggccagcggctaccgtgctggacagcacagGTACGGACAGAGgaaccctgggagccgcaggtttcagcttt-----ggggagggaggatgaactagcaaaggcagccaagaaggaacagccggaaaggcaggagaccccaggttgctgggtgcccaggatggcaagaatgggctccagggaagagcacatagccctgggccactgtgccgagcctgagccaaggactgagatgagaactgtggttgactcagcaacgtggagccattCCTACAAAACTTGCTCCAGTTTTGCTGGTACAGGGACACTGCGAGTGGCAGGGGCAGCAGCCACCTGGGCAGGTTCTGTGGAGACACACAgtgggaagctctgagctcagctcaccacctgcaagctccgac--aaccctgccgcagcctcatgatattggtgctgcccttagttgataggaaacagctcagagaagggacactgcttgcttagagtcacacagc--------aaaaaaaaaagaaaatacttgcagtcaggtctgtgctcgtgtgccttccatcctgctgttccctcccttcagGGGGAGGAGG
s panTro4.chr19              59017070 601 +  63644993 TATTTCAACTTAAGTGAAAATCTCACCTGTGGCCGGCGGCTACCGTGCTGGACAGCACAGGTACGGACAGAGgaaccctgggagccgcaggtttcagcttt-----ggggagggaggatgaactagcaaaggcagccaagaaggaacagccggaaaggcaggagaccccaggctgctgggtgcccaggatggcaagaatgggctccagggaagagcacatagccctgggccactgcgccgagcctgagccaaggactgagatgagaactgtggttgactcagcaacgtggagccattCCTACAAAGCTTGCTCCAGTTTTGCTGGTACAGGGACACTGTGAGTGGCAGGGGCAGCAGCCACCTGGGCAGCTTCTGTGGAGACGCACAgtgggaagctctgagctcagctcaccacctgcaagctctgac--aaccctgccgcagcctcatgatattggtgctgcccttagttgataggaaacagctcagagaagggacactgcttgcttagagtcacacagc----aaaaaaaaaaaaaaaaaaaaaattgcagccaggtctgTGCTTGTGTGCCTTCCATCCTGCTGTTCCCTCCCTTCAGGGGGAGGAGG
i panTro4.chr19             C 0 I 115
s ponAbe2.chr19              55893856 594 +  60714840 TATTTCAACTTAAGTGAAAATCTCACCTGTGGCCGGCGGCTACCGTGCTGGACAGCACAGGTGC-GACAGAGgaaccctgggagccgcaggtttcagcttt-----ggggagggaggatgaactagcaaaggcggccaagaaggaacagccggaaaggcaggagaccccaggatgctgggtgcccaggatggcaagaatgggctccagggaagagcacatagccctgggccactgcaccgagcctgagccaaggactgagatgagaactgtggttgatgcaacaacgtggagccattCCTACAAAGCTTGCTCCAATGTTGATGGGACAGGGACACTGTGAGTGGCAGGGGCAGCACCCACCTGGGCAGGTTCTGTGGAGACACACAgtgggaagctctgagctcagctcaccacctgcaagctccggcttaaccccgctgcagcctcatgatattggtgctgcccttagttgataggaaacagctcagagaagggacactgcttgcttagagtcataccgc------------aaaaaaaaaaaaacttgcagccaggtctgTGCTTGTGTGCCTTCCATCCTGCTGTTCCCTCCCTTCAGGGGGAGGAGG
i ponAbe2.chr19             C 0 I 1
s nomLeu3.chr10             102658792 591 - 106955855 TATTTCAACTTAAGTGAAAATCTCACCCGTGGCCGGCGGCTACCGTGCTGGACAGCACAGGTGCGGACACAGgaaccctgggagccgcaggtttcagctttgcggaggggagggaggatgaactagcaaaggcggccaagaaagaacagccggaaaggcaggagaccccaggctgctgggtgcccaggatggcaagaatgggctccagggaagagcacgtagccctgggccactgcgccg-----------aggaccgagatgagaactgtggttga--cagcaatgtggagccattCCTACAAAGCTTGCTCCAAGTTTGCTGGGACAGGGACACT--GAGTGGCAGGGGCAGCAGCCACCTGGGCAGGTTCTGTGGAGACGCACAGTGGGAAGCTCTGAGCTCAGCTCACCACCTGCAAGCTTCGGCTTAACCCCGCCGCAGCCTCATGATATTGGTGCTGCCCTTAGTTGATAGGAAACAGCTCAGAGAA-GGACACTGCTTGCTT--AGTCACACCGC---aaaaaaaaaaaaacacaaaaaaCTTGCAGCCAGGTCTGTGCTCATGTGCTTTCCATCCTGCTGTTCCCTCCCTTCAGGGGGAGGAGC
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              59944337 568 +  64156825 tatttcaacttaagtgaaaatctcacccgtggccagcggctaccgtgctggacagcacagGTGCGGACAGAGgaaccctgggagccgcaggtttcagctttg----gggaaaggaggatgaactagcaaaggcggccaggaaggaacagcctgaaaggcaggagaccccaggctgccgggtgaccaggatggcaagaatgggctccagggaagagcacataaccctgggtcactgcgccgagcctgagccgaggaccgagatgagaaccgtggttgactcagcaaggtggagCCCTTCCTACCAAGCTTGCTCCCATTTTGCTGGGACAGGGACACTGTGAGTGGCAGGGGCAGCAGGCACCGGGGCAGGTTTTGTGGAGATGCACAGTGGGAAGCTCTGGCCT---------------------------AAccccgccacaacctcatgatactggcactgcccttagttgataggaaacagctcagagaagggacactgcttgcttagagtcacacCACaaaaaaaaaaaaaaaaaaaaaaaaaCTTGCA-------------TTTTGTGCCTTCCATCGTGCTGTTCCCTCCCTTCAGGAGAAGCAGC
i rheMac3.chr19             I 2123 I 1
s macFas5.chr19              54948300 564 +  59248254 tatttcaacttaagtgaaaatctcacccgtggccagcggctaccgtgctggacagcacagGTGCGGACAGAGgaaccctgggagccgcaggtttcagctttg----gggaaaggaggatgaactagcaaaggcggccaggaaggaacagcctgaaaggcaggagaccccaggctgccgggtgaccaggatggcaagaatgggctccagggaagagcacataaccctgggtcactgcgccgagcctgagccgaggaccgagatgagaaccgtggttgactcagcaaggtggagCCCTTCCTACCAAGCTTGCTCCCATTTTgctgggacagggacactgtgagtggcaggggcagcaggcaccggggcaggTTTTGTGGAGATGCACAGTGGGAAGCTCCGGCCT---------------------------AACCCCGCCACAACCTCATGATACTGGCACTGCCCTTAGTTGATAGGAAACAGCTCAGAGAAGGGACACTGCTTGCTTAGAGTCACACCAC----aaaaaaaaaaaaaaaaaaaaaCTTGCA-------------TTTTGTGCCTTCCATCGTGCTGTTCCCTCCCTTCAGGAGAAGCAGC
i macFas5.chr19             I 1781 I 1
s papAnu2.chr19              47082365 562 +  51301725 TATTTCAACTTAGGTGAAAATCTCACCCGTGGCCGGCGGCTACCGTGCTGGACAGCACAGGTGCGGACAGAGGAACCCTGGGAGCCGCAGGTTTCAGCTTTG----GGGAAAGGAGGATGAACTAGCAAAGGCGGCCAAGAAGGAACAGCCTGAAAGGCAGGAGACCCCAGGCTGCTGGGTGACCAGGATGGCAAGAATGGGCTCCAGGGAAGAGCACGTAGCCCTGGGTCACTGCGCCGAGCCTGAGCCGAGGACCGAGATGAGAACCGTGGTTGACTCAGCAACGTGGAGCCCTTCCTACCAAGCTTGCTCCCATTTTGCTGGGACAGGGACACTGTGAGTGGCAGGGGCAGCAGTCACCGGGGCAGGTTTTGTGGAGATGCACCGTGGGAAGCTCCGGCTT---------------------------AACCCCGCTGCACCCTCATGATACTGGCACTGCCCTTAGTTGACAGGAAACAGCTCAGAGAAGGGACACTGCTTGCTTAGAGTCacaccgc---aaaaaaaaaaaaaaaaaaaaaaattgca-------------ttttgtgCCTTCCATCGTGCTGTTCCCTCCCTTCAGG---AGCAGC
i papAnu2.chr19             I 2426 I 1
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I
e calJac3.chr22              45353611 1458 +  49145316 I
e chlSab2.chr6               46784776 1495 +  50890351 I

a score=118512.000000
s hg38.chr19_GL949751v2_alt     84214 55 +   1002683 CCCTCCACCCGGCCCTCCCTCAGTCC---CAGTGCTCAGCCCTCTCCACCCGGCCCTC
s panTro4.chr19              59017786 55 +  63644993 ccctccacccgcccctccctcagtcc---cagtgctcagccccttccacccgcccctc
i panTro4.chr19             I 115 C 0
s ponAbe2.chr19              55894451 55 +  60714840 CCCTCCACCCGGCCCTCCCTCAGTCC---CAGTGCTCAGCCCCCTCCACCCGGCCCTC
i ponAbe2.chr19             I 1 C 0
s nomLeu3.chr10             102659384 55 - 106955855 CCCTCCACCCCGCCCTCCCTCAGTCC---CAGCGCGCAGCCCCCTCCACCCCCCCCTC
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              59944906 55 +  64156825 CCCTCCAGCCGGCCCTCCCTCAGTCC---CGGCGCGCAGCCCCCTGCACCCGGCCCTC
i rheMac3.chr19             I 1 C 0
s macFas5.chr19              54948865 55 +  59248254 CCTTCCAGCCGGCCCTCCCTCAGTCC---CGGCGCGCAGCCCCCTGCACCCGGCCCTC
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47082928 58 +  51301725 CCCTCCAGCTGGCCCTCCCTCAGTCTCGGCGGCGCGCAGCCCCCTCCAGCCGGCCCTC
i papAnu2.chr19             I 1 I 7
s chlSab2.chr6               46786271 55 +  50890351 CCCTCCAGCCGGCCCTCCCTCAGTCC---CGGGGCGCAGCCCCCTCCAGCCGGCCCTC
i chlSab2.chr6              I 1495 I 7
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I
e calJac3.chr22              45353611 1458 +  49145316 I

a score=54144.000000
s hg38.chr19_GL949751v2_alt     84269 31 +   1002683 CCTCAGT-CCCAGCG--------------------------------------CACAGCCCCTTCCACCC
s panTro4.chr19              59017841 31 +  63644993 cctcagt-cccagtg--------------------------------------ctcagccccttccaccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894506 69 +  60714840 CCTCAGT-CCCAGTGCTCAGCCCTCTCCACCCGGCCGTCCCTCAGTCTGAGCACACAGCCCCCTCCACCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659439 32 - 106955855 CCTCAGTCCCCAGCG--------------------------------------CGCAGCCCCCTCCACCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59944961 31 +  64156825 CCTCAGT-CCCAGCA--------------------------------------CGCAGCCCCCTCCAGCC
i rheMac3.chr19             C 0 I 25
s macFas5.chr19              54948920 31 +  59248254 CCTCAGT-CCCAGCG--------------------------------------CGCAGCCCCCTCCAGCC
i macFas5.chr19             C 0 I 25
s papAnu2.chr19              47082993 31 +  51301725 CCTCAGT-GCTGGCG--------------------------------------CGCAGCCCCCTGCACCC
i papAnu2.chr19             I 7 T 38
s chlSab2.chr6               46786333 31 +  50890351 CCTCAGT-CCCGGGG--------------------------------------CGCAGCCCCCTCCAGCC
i chlSab2.chr6              I 7 C 0
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I
e calJac3.chr22              45353611 1458 +  49145316 I

a score=27029.000000
s hg38.chr19_GL949751v2_alt     84300 11 +   1002683 GGCCCTCCCTC
s panTro4.chr19              59017872 11 +  63644993 ggccctccctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894575 11 +  60714840 AGCCCTCCTTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659471 11 - 106955855 CGCCCTCCCTC
i nomLeu3.chr10             C 0 T 39
s rheMac3.chr19              59945017 11 +  64156825 GGCCCTCCCTC
i rheMac3.chr19             I 25 C 0
s macFas5.chr19              54948976 11 +  59248254 GGCCCTCCCTC
i macFas5.chr19             I 25 C 0
s papAnu2.chr19              47082986 11 +  51301725 GGCCCTCCCTC
i papAnu2.chr19             T 38 C 0
s chlSab2.chr6               46786364 11 +  50890351 GGCCCTCCCTC
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I
e calJac3.chr22              45353611 1458 +  49145316 I

a score=14606.000000
s hg38.chr19_GL949751v2_alt     84311 12 +   1002683 AGT-CCCAGTGCT
s panTro4.chr19              59017883 12 +  63644993 agt-cccagtgct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894586 12 +  60714840 AGT-CCGAGCCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659443 13 - 106955855 AGTCCCCAGCGCG
i nomLeu3.chr10             T 39 C 0
s rheMac3.chr19              59945028 12 +  64156825 AGT-CCTGGCGTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54948987 12 +  59248254 AGT-CCTGGCGCG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47082997 12 +  51301725 AGT-GCTGGCGCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786375 12 +  50890351 AGT-CCCGGGGCG
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I
e calJac3.chr22              45353611 1458 +  49145316 I

a score=26184.000000
s hg38.chr19_GL949751v2_alt     84323 12 +   1002683 CAGCCCTCTCCA
s panTro4.chr19              59017895 12 +  63644993 cagccccttcca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894598 12 +  60714840 CAGTCCCCTCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659456 12 - 106955855 CAGCCCCCTCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59945040 12 +  64156825 CAGTCCCCTGGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54948999 12 +  59248254 CAGTCCCCTGGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083009 12 +  51301725 CAGCCCCCTGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786387 12 +  50890351 CAGCCCCCTGCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45355069 12 +  49145316 CAACCCACTCTA
i calJac3.chr22             I 1458 C 0
e mm10.chr7                   3621429 2960 + 145441459 I
e canFam3.chr1               19581557 2773 - 122678785 I

a score=39653.000000
s hg38.chr19_GL949751v2_alt     84335 13 +   1002683 CCCGGCCCTCCCT-
s panTro4.chr19              59017907 13 +  63644993 cccggccctccct-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894610 13 +  60714840 CCCGGCCCTCCCT-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659468 13 - 106955855 CCCCGCCCTCCCT-
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              59945052 13 +  64156825 CCCGGCCCTCCCT-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54949011 13 +  59248254 CCCGGCCCTCCCT-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083021 13 +  51301725 CCCGGCCCTCCCT-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786399 13 +  50890351 ACCGGCCGTCCCT-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45355081 13 +  49145316 CCTGGCCCTCCCT-
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3624389 14 + 145441459 CCTACCCCTCACCC
i mm10.chr7                 I 2960 C 0
e canFam3.chr1               19581557 2773 - 122678785 I

a score=3600.000000
s hg38.chr19_GL949751v2_alt     84348 1 +   1002683 C
s panTro4.chr19              59017920 1 +  63644993 c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894623 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59945065 1 +  64156825 C
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54949024 1 +  59248254 C
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083034 1 +  51301725 C
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786412 1 +  50890351 C
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45355094 1 +  49145316 C
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3624403 1 + 145441459 C
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19581557 2773 - 122678785 I
e nomLeu3.chr10             102659481 1 - 106955855 I

a score=262629.000000
s hg38.chr19_GL949751v2_alt     84349  99 +   1002683 AGTCCCAGTGCTCAGCCCTC--TCCTCCAACACCGAATCCCACTCTTCCTCCTTGTTTGCCTCAGCCCCCGGCCCTCATCTCCGG---CTTCTCCTTGTGGCTT
s panTro4.chr19              59017921  99 +  63644993 AGTCCCAGTGCTCAGCCCTC--TCCTCCAACACCGAATCCCACTCTTCCTCCTTGTTTGCCTCAGCCCCTGGCCCTCATCTCCGG---CTTCTCCTTGTGGCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894624  95 +  60714840 AGTCCCACTGCTCAGCCCTC--TGCTGCAAGACCAAATCCCACTCTT----CTTGTTTGCCTCAGCCCCCGGCCCTCATCTCCAG---CTTCTCCTTGTGGCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659482  99 - 106955855 AGTCCCAGCGCGCAGCCCTC--TCCTCCAAGACCGAATCCCACTCTTCCTCCTTGTTTGCCTCAGCCCCCGGCCCTCATCTCCAG---CTTCTCCTTGTGGCTT
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              59945066  99 +  64156825 AGTCCTAGTGCTCAGCTCTC--TCCTCCAAGACCGAA-CGCACTCTTCCTCC--GTTTGCCTCAGGCCCCGGCCCTCATCTCCTGCCTCTCCTCCTTGTGGCTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54949025  99 +  59248254 AGTCTTAGTGCTCAGCTCTC--TCCTCCAAGACCGAA-CGCACTCTTCCTCC--GTTTGCCTCAGGCCCCGGCCCTCATCTCCTGCCTCTCCTCCTTGTGGCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083035  99 +  51301725 AGTCCTAGTGCTCAGCTCTC--TCCTCCAAGACCGAA-CACACTCTTCCCCC--GTTTGCCTCAGGCCCTGGCCCTcatctcctgcctctcctccttGTGGCTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786413  99 +  50890351 AGTCCTAGTGCTCAGCTCTC--TCCTCCAAGACCGAA-CGCACTCTTCCTCC--GTTTGCCTCAGCCCCCGGCCCTCATCTCCTGCCTCTCCTCCTTGTGGCTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45355095 100 +  49145316 AGTCCCAGTGCTCAGCGCTCCTCCCTCCAAGACCGAATTCCACTCTTCCT----GCTTGCCTCAGCCCCAGGCCCTCATCTCCAGGCTCTCTTCCTTGTGACTT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3624404  93 + 145441459 AGGCCCAGGGC-CAGCTCTT--CATTCCATGACCCAGTGCTACTTCTCC-----ACTTCTCTCA-CTCTGGGCCCTTCTCCTCAG--TTTTGTCCCCGTGCTTT
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19581557 2773 - 122678785 I

a score=658438.000000
s hg38.chr19_GL949751v2_alt     84448 184 +   1002683 GTGAGGGTTGGGTGGATGTGGAAGT-GGG----AGAGAC---AGAGGGGCTGGG---AGCATTTGGGAGC--TGAGGCTCACAGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCCGTTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTATGGGGTGGGAAA---
s panTro4.chr19              59018020 184 +  63644993 GTGAGGGTTGGGTGGATGTGGGAGT-GGG----AGAGAC---AGAGGGGCTGGG---AGCATTTGGGAGC--TGAGGCTCACGGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCCGTTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTATGGGGTGGGAAA---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894719 175 +  60714840 GT---------GTGGATGTGGGAGT-GGG----AGAGAC---AGAGCGGCTGGG---AGCACTTGGGAGC--TGAGGCTCACGGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCCGTTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGGAAA---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659581 179 - 106955855 GTGAGGGTTGGGTGGATGTGGGAGT-GGG----AGAGAC-------GGGCTGGT---TGCGTTTGGGAGC--TGAGGCTCACGGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCCGTTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGG-AA---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59945165 185 +  64156825 GTGAGGGTTGGGTGGACGTGGGAGTGGGG----AGAGAC--CAGAGGGACTGGG---GGTGTTTGGGAGC--CGGGGCTTAGGGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCCGCTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGG-AA---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54949124 185 +  59248254 GTGAGGGTTGGGCGGACGTGGGAGTGGGG----AGAGAC--CAGAGGGACTGGG---GGTGTCTGGGAGC--CGGGGCTTAGGGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCCGCTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGG-AA---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083134 185 +  51301725 GTGAGGGTTGGGCGGacgtgggagtgggg----agagac--cAGAGGGACTGGG---GGTGTTTGGGAGC--CGAGGCTTAGGGGCCCAG---AGGGGACGGAGAAGGGGTTACCTCcgctcctgctgcagcctccgaGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGG-AA---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786512 185 +  50890351 GTGAGGGTTGGGCGGACGTGGGAGTGGGG----AGAGAC--CAGAGGGACTGGG---GGTGTTTGGGAGC--CGAGGCTTAGGGGCCCAG---AGGGGACGGTGAAGGGGTTACCTCCGCTCCTGCTGCAGCCTCCGAGTTATCCTCTGCACCTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGG-AA---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45355195 186 +  49145316 GTGAGGGTTGGGTGGTCATGGGAGTGGGG----AGACAC--GATAGCGGGTGAG---AGTGTCTGGGAGC--TGAAGCTCACAGGCCCAG---TGGAGGCACAGAAGGGGTTACCTCCTCTCCTGCTGTAGCCTCCGAGTGATCCTCTGCACTTGATGGAGCCTGTTCAGGACCCGCTCGTTCACCTGTGGGGTGGGAAA---
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3624497 187 + 145441459 ATGAAGGCCAGGAAGACGGGAGATAATGGCACAAAGGGT--GAAAGGTGGTGGA---AATATGTGGGAGCAAAGGGGCT---GGGCCCAC---AGAGTATACAGAATGG--TACCTGCGCTCCTGCTGGAGTCTCCGAGTTATCCTTTGCACCTGATGGAGCCTGTTCAAGACTCGCTCATTCACCTGCAAGGAGGCAGA---
i mm10.chr7                 C 0 I 2191
s canFam3.chr1               19584330 196 - 122678785 GTGAGGCCTGCACAGACACGAAGGAGGCA----AGAATCGCCAGAGGTGGTAGAAACAGCAGCTGGGAGC--AGAGGCCCG-GGGCCCAGGGAGGGGGGCGTGCAGGGGCTTACCTCCGCTCCTGCTGCAGTCTCCGTGTTATCCTTTGCACCTGATGAAGTCTGTTCAGGACCCGCTCATTCACCTGCAGGGAGCCAGAAGG
i canFam3.chr1              I 2773 C 0

a score=908721.000000
s hg38.chr19_GL949751v2_alt     84632 307 +   1002683 CGCCCATCAGCTGGATCCCACGGCTCCCGTTCATTTGTTTAACGGATGTTTAATGGGGCACGCACTAAACTCT----------GGAGACTGGCCAAAGACCATCCCGTGGCCTGAGGTC-CTTCCACCTTCCCATCCCTCCGGCTCCCctctcaccatgccacagtcctgagtgccctccagt---gggggcctt-ccgcgtgctgttcctctacctggaccctctccccagtcatccgcacaacttactccccactc---caagtcttaggtcaactgttacctgctcagagag----cctgaacctcccattaagtcgaaacacacc
s panTro4.chr19              59018204 307 +  63644993 CTCCCATCAGCTGGATCCCACGACTCCCGTTCATTTGTTTAACGGATGTTTAATGGGGCACGCACTAAACTCT----------GGAGACTGGCCAAAGACCATCCCGTGGCCTGAGGTC-CTTCCACCTTCCCATCCCTCCAGCTCCCctctcaccatgccacagtcctgagtgccctccagt---gggggcctt-ccgcatgctgttcctctacctggaccctctccccagtcatccgcacaactcactccccactc---caagtcttaggtcaactgttacctgctcagagag----cctgaacctcccattaagtcgaaacacacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55894894 309 +  60714840 CTCCCATCAGCTGGATCCCACGGCTCCCGTTCATTTGTTTAACGGATGTTTAATGGGGCACGCACTAAACTCTGG--------GGAGACTGGCCAAAGACCATCCCGTGGCCTGAGGTC-CTTCCACCTTCCCATCCTACCGGCTCCCctctcaccatgccacagtcctgagtgccctccagt---gggggcctt-ccgcatgctgttcctctacctggaccctctccccagccatccgcacaactcactctccactc---caagtcttaggtcaactgttacctgctcagagag----cccgaacgtcccattaagtcgaaacacacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102659760 304 - 106955855 CTCCCATTAGCTGGATCCCACGGCTCCCGTTCATTTGTTTAAGGGATGTTTAATGGGGCACGCACTAACCTCTGG--------GGAGATTGGCCAAAGACCATCCCGTGGCCTGAGGTC-CTTCCACCTTCCCATCCCTCCGGCTCCCCTCTCACCATGCCACAGTCCTGAGTGCCCTCCAGT---GGgggcctt-ccgcatgctgttcctctccctggac---ctccccagccatcctcacaactcactccccactc---caagtc--aggtcaactgttacctgctcagagag----cccGAACCTCCCATTAAGTCGAAACACACC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59945350 309 +  64156825 CTCCCATCAGCTGGATCCCACGGCTCCCGTTCATTTGTTCAACGGATGTTTAATGGGGTACGTACTAGGCTCCGG--------GGAGACTGGTCAAAGACCATCGTGTGGGCTGAGGtc-cttccaccttcccctccctccggctcccctctcaccatgccacagtcctgagtgccctcccgt---gggggcctc-ccgcatgctgttcctctacctggaccctctccccagccgtccatacggctcactccccactc---caagtcttaagtcaactgttacctgctcagagac----cccgaacctcccattaagtcgaaacacacc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54949309 309 +  59248254 CTCCCATCAGCTGGATCCCACGGCTCCCGTTCATTTGTTCAACGGATGTTTAATGGGGTATGTACTAGGCTCCGG--------GGAGACTGGTCAAAGACCATCGTGTGGGCTGAGGTC-CTTCCACCTTCCCCTCCCTCCGGCTCCCctctcaccatgccacagtcctgagtgccctcccgt---gggggcctc-ccgcatgctgttcctctacctggaccctctccccagccgtccatacggctcactccccactc---caagtcttaagtcaactgttacctgctcagagac----cccgaacctcccattaagtcgaaacacacc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083319 309 +  51301725 CTCCCATCAGCTGGATCCCACGGCTCCCGTTCATTTGTTCAACGGATGTTTAATGGGGCACGTACTAGGCTCCGG--------GGAGACTGGTCAAAGACCATCGTGTGGGCTGAGGTC-CTtccaccttcccctccctccGGCTCCCCTCTCACCATGCCACAGTCCTGAGTGCTCTCCTGT---GGGGGCCTT-CGGCATGCTGTTCCTCTACCTGGACCCTCTCCCCAGCCGTCCATACGGCTCACTCCCCACTC---CAAGTCTTAAGTCAACTGTTACCTGCTCAGAGGC----CCCAAACCTCCCATTAAGTCGAAACacacc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46786697 309 +  50890351 CTCCCATCAGCTGGATCCCACGGCTCCCGTTCATTTGTTCAACGGATGTTTAATGGGGCACGTACTAGGCTCCGG--------GGAGACTGGTCAAAGACCATCGTGTGGGCTGAGGTC-CTTCCACCTTCCCCTCCCTCCGGCTCCCCTGTCACcatgccacagtcctgagtgccctcccgt---gggggcctt-ccgcatgctgttcctctacctggaccctctccccagccgtccatacggctcactccccactc---caagtcttaagtcaactgttacctgctcagagac----cccgaacctcccattaagtcgaaacacacc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45355381 311 +  49145316 CTCACATGAGCTGGCTCCCACTCCTCCCATTCATTTGTTCAACGGATGTGTAATGGAGCACTTGCTAAGCTTGGG--------GGAGACTGGACAAAGACCCTCCTGTGGCCTGAGGCCACGTCCACCTTCCCatccctcccactcccctctcaccacgctg-ggtcctgagtgccctcctgt----ggggcctt-ccacatgccattcttctacatggaccctcgacccagccattcacgcagctcactccccactccctcaagtcttagatcaactgttacctgctcagggag----cccaaacctcccaTTAAGTCGAAACATACC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19584526 269 - 122678785 CACAGGTCACCTGGACTCTGC---------TCACTTATTCCATGTGGGATGAATGTAGCGCCAGCGGGGGCCCAGAGGCCTCAGGGAGCCGGCCACA---CTCCCCATGGCCTCTGGGG-CTGCTGCGCCCACTCCTTtcctgcatctgcgcctcccta-------gctggctgc-ctcctgtcctgggggccttcccacatgc--------------------------------cagaggagctccctccct-------caagcctgacctcagaggttacctcctcagggagtccacccagacctcccaccacacagcaatacccc
i canFam3.chr1              C 0 I 354
e mm10.chr7                   3624684 2191 + 145441459 I

a score=325164.000000
s hg38.chr19_GL949751v2_alt     84939 134 +   1002683 aggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgagtaggtcccctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaa--a
s panTro4.chr19              59018511 134 +  63644993 aggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgagtagatcccctgaggtctggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaa--a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895203 134 +  60714840 aggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgagtagatcccctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaa--a
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660064 131 - 106955855 Aggccaggcgcggtaat---cgcctgtaatcccagcactttgggaggccgaggcgagtagatcccctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaagtacaaga--a
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59945659 119 +  64156825 Aggccaggcgcggtggctaatgcc---------------ttgggaggccgaggcggacagattactcaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctttactaaagatacaaaaa--
i rheMac3.chr19             C 0 I 382
s macFas5.chr19              54949618 118 +  59248254 Aggccaggcgcggtggctaatgcc---------------ttgggaggccgaggcggacagattactcaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctttactaaagatacaaaa---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083628 118 +  51301725 aggccaggcgcggtggctaatgcc---------------ttgggaggccgaggcggacagattattcaaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccgtctttactaaagatacaaaa---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46787006 119 +  50890351 Aggccaggcgcggtggctaatgcc---------------ttgggaggccgaggcggacagattattcaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctttactaaagatacaaaa-a-
i chlSab2.chr6              C 0 I 119
s calJac3.chr22              45355692 134 +  49145316 Aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagttcgaaagcagcctggccaacatggcgaaaccccgtctccactaaaaatacaaaa--a
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3624684 2191 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I

a score=27993.000000
s hg38.chr19_GL949751v2_alt     85073 20 +   1002683 attagctgggcgtggtggca
s panTro4.chr19              59018645 20 +  63644993 attagctgggcatggtggca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895337 20 +  60714840 gttagccgggcatggtggca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660195 20 - 106955855 attagctgggcgtggtggca
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54949736 20 +  59248254 attacccggatgttgtggcg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47083746 20 +  51301725 attacccggatgttgtggcg
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45355826 20 +  49145316 attagccaggcgtggtggca
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3624684 2191 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e chlSab2.chr6               46787125 119 +  50890351 I
e rheMac3.chr19              59945778 382 +  64156825 I

a score=8221.000000
s hg38.chr19_GL949751v2_alt     85093 8 +   1002683 ggtgcctg
s panTro4.chr19              59018665 8 +  63644993 ggtgcctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895357 8 +  60714840 ggcgcctg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660215 8 - 106955855 ggcgcctg
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47083766 8 +  51301725 catgcctg
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45355846 8 +  49145316 tgtgcctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3624684 2191 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e chlSab2.chr6               46787125 119 +  50890351 I
e macFas5.chr19              54949756 0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=56098.000000
s hg38.chr19_GL949751v2_alt     85101 100 +   1002683 caggatagtcgcacgaacctgggaggtggaggggtgaagtgagttgagatcaccccactgcactccagcctgggcaacagagcgaggttctgt-----ttcaaaa
s panTro4.chr19              59018673 100 +  63644993 caggatagtcgcacgaacctgggaggtggaggggtgaagtgagttgagatcaccccactgcactccaggctgggcaacagagcgagattctgt-----ttcaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895365 100 +  60714840 caggatagttgcacgaacccgggaggtggaggggtgaagtgaggtgagatcaccccactgcactccagcctgggcaacagagcgagattctgt-----ttcaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660223 100 - 106955855 caggatagtcgcatgaacccgggaggtggaggggtgaagtgagttgagatcaccccactgcattccagcctgggtgacagagtgagactctgt-----ctcaaaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47083774  82 +  51301725 -----taatttcagctactcgagaggctgaggtcaggagt------------------tccagaccagcccagtcaacatgatgaaaccctgtctttactcaaaa
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3624684 2191 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e calJac3.chr22              45355854   0 +  49145316 C
e chlSab2.chr6               46787125 119 +  50890351 I
e macFas5.chr19              54949756   0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=3343.000000
s hg38.chr19_GL949751v2_alt     85201 7 +   1002683 aaaaaaa
s panTro4.chr19              59018773 7 +  63644993 aaaaaag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895465 7 +  60714840 aaaaaag
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47083856 7 +  51301725 aaaaaaa
i papAnu2.chr19             C 0 I 393
e mm10.chr7                   3624684 2191 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e calJac3.chr22              45355854 0 +  49145316 C
e nomLeu3.chr10             102660323 0 - 106955855 C
e chlSab2.chr6               46787125 119 +  50890351 I
e macFas5.chr19              54949756 0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=88736.000000
s hg38.chr19_GL949751v2_alt     85208 342 +   1002683 ttgcaacacacccgaccccccttcccatgccagaaccccacccggccattcactcctggctttatttcctcctagtgctcatctgaggaggcaggacgcagcctctccgcctctttgcttattctgctgactgaccgcctctccagccagagcatgagctgaaaaacgacagcaacttgtttctacatcccgtgccttaaccagagcctggcacgtagtacatcctccatgaacatttgcagaatcaatgaCTTTGCAAAGTGAGAAGTGCTTGGTGAATACCAAAGAGTCAGACATGCTGGAGGTTAGGGCAGGAGGTGCGACTTTAGTTACGACCTGCAG
s panTro4.chr19              59018780 342 +  63644993 ttgcaacacacccgcccccccttcccatgccagaaccccaccaggccattcactcttagctttatttcctcctagtgctcatctgaggaggcaggacgcagcctctccgcctctttgcttattctgctgactgaccgcctctccagccagagcatgagctgaaaaacgacagcgacttgttcctacatcccgtgccttcaccagagcctggcacgtagtacctcctccatgaacgtttgcggaattgatgaCTTTGAAAAGTGAGAAGTGCTTGGTGAATACCAAAGAGTCAGACATGCTGGAGGTTAGGGCAGGAGGTGCGACTTTAGTTACGACCTGCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895472 334 +  60714840 ttgcaacacacccacccccccttcccatgccagaaccccacctggccattcactcttagctttatttcctcctagtgttcatctgatgaggcaggacgcagcctctc--------tgcttattctgctgactgaccgcctctccagccagagcatgagctgaaaaatgacagcgacttgttcctacatcccgtgccttaaccagaccctggcatgtagtacatcctccatgaacatttatggaatcaatgaCTTTGCAAAGTGAGAAGTGCTTGGTGAATACCAAAGAGTCAGACATGCTGGAGGTTAGGGCAGGAGGTGCGACTTTAGTTACGACCTGCAG
i ponAbe2.chr19             C 0 C 0
e mm10.chr7                   3624684 2191 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e calJac3.chr22              45355854   0 +  49145316 C
e nomLeu3.chr10             102660323   0 - 106955855 C
e chlSab2.chr6               46787125 119 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54949756   0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=74622.000000
s hg38.chr19_GL949751v2_alt     85550 209 +   1002683 AGAAGGCCCGTGGGCCCAGACTTGAATAA---GGAGGAGACAAAGGGG-----TGACAGGAGGAAAGTATGCCAGGCTGAGGGGACAGCCCTGCACGCAGCTTCTGAGGACTCCAGCCTAGACATGG--AGGGAGAGATGTGACTCAGCCAAACAGGGACCCAAAGACAGTGGCTGAAGCAGGTGCTGCTCCTGGGTCAGAAAGACCTGAG--TTCCGggc
s panTro4.chr19              59019122 209 +  63644993 AGAAGGCCCGTGGGCCGAGACTTGAATAA---GGAGGAGACAAAGGGG-----TGACAGGAGGAAAGTATGCCAGGCTGAGGGGACAGCCCTGCACGCAGCTTCTGAGGACTCCAGCCTAGACATGG--AGGGAGAGATGTGACTCAGCCAAACAGGGACCCGAAGACAGTGGCTGAAGCAGGTGCTGCTCCTGGGTCAGAAAGACCTGAG--TTCAGggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55895806 206 +  60714840 AGAAGGCCCGTGGGCCCAGACTTGAATA------AGGAAACAAAGGGG-----TGACAGGAGGAAAGTACACCAGGCTGAGGGGACAGCCCTGCACGCAGCTTCTGAAGACTCCAGCCTAGACATGG--AGGGAGAGATGTGACTCAGCCAAACAGGGAACCGAAGACAGTGGCTGAAGCAGGTGCTGCTCCTGGGTCAGAAAGACCTGAG--TTCAGggc
i ponAbe2.chr19             C 0 C 0
s mm10.chr7                   3626875 209 + 145441459 AGAAGATCTTTAAGCCAACACCTGAATGACAGGCAGGAGACAAATAAGAAGCAAGTCAGGAGGAGAACATTCCAGAATCAGGGAACAGCCCT---TGAACTTTTTGAAGGCCCCAGCCTAGATATGGAAAGGAAAGGACAAGACTCAGTCAAACAGTG--CCTAGGACACAGGCTAAAG-------TTctttctgatcagaaagacctgcactttccaggc
i mm10.chr7                 I 2191 I 1545
e canFam3.chr1               19584795 354 - 122678785 I
e calJac3.chr22              45355854   0 +  49145316 C
e nomLeu3.chr10             102660323   0 - 106955855 C
e chlSab2.chr6               46787125 119 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54949756   0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=84692.000000
s hg38.chr19_GL949751v2_alt     85759 321 +   1002683 ggggcacagtggctcacgcctgtaatcccagcactttgggaggccggggcgggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaagatacaaaaattggccggatgttgtggcacatgcctgtaatctcagctactcaagagtttgaggtcgggagttccagaccagcccggccaacatgatgagacctcatctctactaaaaaaaaaaaaaaaaaaa----gaaaaatacaaaaattagctgggtatggtggcgcatgcctgtaatcccagtttctcaggaggctgagg
s panTro4.chr19              59019331 322 +  63644993 ggggcacagtggctcacgcctgtaatcccagcactttgggaggccggggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaagatacaaaaattggccggatgttgtggcacatgcctgtaatctcagctactcaagaggctgaggtcaggagttccagaccagcccagccaacatgatgaaacctcatctctactaaaaaaaaaaaaaaaaaaa---agaaaaatgcaaaaattagctgggtatggtggcgcatgcctgtaatcccagtttctcaggaggctgagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55896012 325 +  60714840 ggggcacagtggctcacgtctgtaatcccagcactttgggaggccggggcgggcagatcccttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaagatacaaaaattggccggatgttgtagcgcatgcctgtaatcccagctactcaggaggcagaggtcaggcgttccagaccagcctggccaacatgatgaaacctcatctctactaaaaaaaaaaaaaaaaaaaaaaagaaaaatacaaaaattagctgggtgtggtggcgcatgcctgtaatgccagtttctcgggaggctgagg
i ponAbe2.chr19             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e calJac3.chr22              45355854   0 +  49145316 C
e nomLeu3.chr10             102660323   0 - 106955855 C
e chlSab2.chr6               46787125 119 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54949756   0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=41293.000000
s hg38.chr19_GL949751v2_alt     86080 108 +   1002683 caggagaatcgcttgaacccaggagctggaggttgcagtgagccgagatcacaccactgccctccagcctgggtgacagagtaagactctgtctcaaaagaaaaaaaa
s panTro4.chr19              59019653 104 +  63644993 caggagaatcgcttgaacccgggagctggaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagtaagact--gtctcaaaa--aaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55896337 102 +  60714840 caggagaatcgcttgaacccgggaggtggaggttgcagggagccgagatcacaccactgcactccagcctgggtgacagagtgagactctgtctc------aaaaaaa
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45355854  98 +  49145316 caggagaatcacttgaa-ctgggaggcagaggctgcagtgagctgagatcatgtcactgcaatccagcctggatgacagagtaacaccctgttt-------aaaaa--
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e nomLeu3.chr10             102660323   0 - 106955855 C
e chlSab2.chr6               46787125 119 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54949756   0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=19887.000000
s hg38.chr19_GL949751v2_alt     86188 26 +   1002683 aaaaaaaaGTgccaggcacggtggct
s panTro4.chr19              59019757 26 +  63644993 aaaaaaaaGTgccaggcacggtggct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55896439 26 +  60714840 ataaaaaaGTgccaggcacggtggct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660323 26 - 106955855 aaaaaaaaGTgctaggcacggtggct
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45355952 26 +  49145316 aaaaaaaaCAgctgggtacggtgact
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e chlSab2.chr6               46787125 119 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54949756  0 +  59248254 C
e rheMac3.chr19              59945778 382 +  64156825 I

a score=99426.000000
s hg38.chr19_GL949751v2_alt     86214  99 +   1002683 cacgcttgtaatcccagcactttcagaggccaaggcgagcggatcacctgaggtcaggagtttgagaccagc----ctaacgtggtgaaaccctgtctctact
s panTro4.chr19              59019783  99 +  63644993 cacacttgtaatcccagcactttcagaggccaaggcgagcggatcacctgaggtcaggagtttgagaccagc----ctaacatggtgaaaccctgtctctact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55896465 103 +  60714840 cacatttgtaatcccagcactttcagaggccaaggcgagcagatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaaccctgtctctact
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660349 103 - 106955855 cacccttgtaatcccagcactttcagaggccaaggcgagcggatcacctgaggtcaggagtttgagaccaggctgactaacatggtgaaaccctctcttcact
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54949756  85 +  59248254 catgcctgtaatctcagctactcgagagg------------------ctgaggtcaggagttccagaccagcccagtcaacatgatgaaaccccatctctact
i macFas5.chr19             C 0 I 17
s calJac3.chr22              45355978 103 +  49145316 cacgcctgtaatcccagcactttgggatgcctaggtgggtggatcacctgaggtcaggagttcaagaccagcctgaccaacatggtgaaaccttgtatctact
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e chlSab2.chr6               46787125 119 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e rheMac3.chr19              59945778 382 +  64156825 I

a score=402033.000000
s hg38.chr19_GL949751v2_alt     86313 240 +   1002683 aaaaatacaaaattagccaggtgtagtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagt-gagctgagattgcagcattgcactccagcctggacaacaagagcgaaaat-ccatctaaaaaaaaa------------------gaGTTCAAGTTTTGGCTCTggcttggcacagtggctcatgcctataatcccagcactttga------------------------gaggccagg
s panTro4.chr19              59019882 243 +  63644993 aaaaatacaaaattagccaggtgtagtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagactcgcttgaacccaggaggcggaggttgcagt-gagctgagattgcagcattgcactccagcctggacaacaagagcgaaact-ccatctaaaaaaaaa-a--aa------------gaGTTCAAGTTTTGGCTCTggcttggcacagtggctcatgcctataatcccagcactttga------------------------gaggccagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55896568 268 +  60714840 aaaaatacaaaattagccaggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagt-gagctgagattgcagcattgcactccagcctggacaacaagagcgaaact-ccatctaaaaaaaaaaa--aa------------gaGTTCAAGTTTTggctctagcttggcacagtggctcatgcctataatcctagcactttgagaggccaaggcaggaggatcactcgaggccagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660452 275 - 106955855 aaaaatacaaaattagccaggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccagcaggcagaggttgcagt-gagctgagattgcagcattgcactccagcctggacaacaagagcgaaact-ccatctaaaaaaaaaaa--aa-----aagaCCTGAGTTCAAGTTTCCGCTCTggcttggcacagtggctcatgcctataatcccagcactttgagaggacaaggcaggaggatcactcaaggccagg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54949858 259 +  59248254 aaaactacaaaattagccaggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcagaagaatcgcttgaacccagaaggtggaggttgcggt-gagccgagatcacaccattgcactccagcctgggcaacaagagcgaaactcccatctgaaaaaaaaaaagaaagaaaaagaCCGGAgttcaagtctcagctctggcctggcacagtggctcatgcctataatcccagcactttga------------------------gaggccaag
i macFas5.chr19             I 17 I 16
s chlSab2.chr6               46787244 254 +  50890351 aaaactacaaaattagctaggtgtggt---gtatgcctgcaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccagaaggtggaggttgcggt-gagccgagatcacaccattgcactccagcctgggcaacaagagcgaaactcccatctgaaaaaaaaaa--aaagaaaaagaCCGGAGTTCaagtctcagctctggcctggcacagtggctcatgcctagaatcccagcactttga------------------------gaggccaag
i chlSab2.chr6              I 119 I 16
s calJac3.chr22              45356081 280 +  49145316 aaaaatacaaaattagctgggtgtggtggtgcatgcctgtaatcccagctactcgggatgctgaggcaggagaatcgcttgaacccaggaggtggaggttgcggtggagctgagatcgcatcattgctctccagcctaggcagcaagaatgaaacc-ccatctcaaaaagaaaa--aa-gaaaaagacctgagttcaaatcttggctctggcttggcatggtggctcatgcctataatcccagcactttgagaggccaaggcaggaggatcacttgaggccagg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e papAnu2.chr19              47083863 393 +  51301725 I
e rheMac3.chr19              59945778 382 +  64156825 I

a score=382868.000000
s hg38.chr19_GL949751v2_alt     86553 180 +   1002683 agttcgacaccagcctgggcaacagagtgagacccc-aacact-caaaaactaaccaaa----aaaattagctgggcttggtggctgtagtcccagctccttcggaggctg---------------agattgctagagtccaggatgttggggctgcagtgagccacagtcatgccactgcactccagcctgggcaacaga
s panTro4.chr19              59020125 181 +  63644993 agttcgacaccagcctgggcaacagagtgagacccccaacact-caaaaactaacaaaa----aaaattagctgggcttggtggctgtagtcccagctccttcggaggctg---------------agattgctagagtccaggatgttggggctgcagtgagccacagtcatgccactgcactccagcctgggcaacaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55896836 180 +  60714840 agttcgacaccagcctgggcaacagagtgagacccc-gacact-caaaaactaacaaaa----aaaattagctgggcttggtggctgtagtcccagctcctttggaggctg---------------agattgctagagcccaggatgttggggctgcagtgaaccacagtcatgccactgcactccagcctgggcaacaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660727 175 - 106955855 agttcaacaccagcctgggcaacacagtgagacccc-aacact-caaaaactaac--------aaaattagctgggcttggtggccgtcgtcccagctccgtcggaggctg---------------agattg-tagagcccaggatgttggagctgcagtgagccacagtcatgccactgcactccagcctgggcaacaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946160 176 +  64156825 agtttgacaccagcctgggcaacagagtgagaccgc-aacactacaaaaaaaaa---------aaaatcatctggccttggtggctgtagtcccagttcctttggaggttg---------------agattgctagagcccaggatgttgaggctgcagtgagccacagtcatgccactgcactccagcctgggcaacaga
i rheMac3.chr19             I 382 C 0
s macFas5.chr19              54950133 175 +  59248254 agtttgacaccagcctgggcaacagagtgagacccc-aacactac-aaaaaaaa---------aaaatcatctggccttggtggctgtagtcccagttcctttggaggttg---------------agattgctagagcccaggatgttgaggctgcagtgagccacagtcatgccactgcactccagcctgggcaacaga
i macFas5.chr19             I 16 C 0
s chlSab2.chr6               46787514 185 +  50890351 agttcgacaccagcctgggcaatagagtgagacccc-aacactacaaaaaaaaaacaaaaaacaaaatcatctggccttggtggctgtagtcccagttcctttggaggttg---------------agattgctagagtccaggatgttgaggctgcagtgagccacagtcatgccactgcactccagcctgggcaacaca
i chlSab2.chr6              I 16 C 0
s calJac3.chr22              45356361 193 +  49145316 agtttgacaccagcctgggcaacagagtgagacccc-atgactacaaaaaagaa---aa----aaaagtagctgggcatggtggctgtagtcccagcttcttgggaggctggaggctaagacaggaagattgctagagcccaggaggtggaggctgcagtgagccacaatcataccactgcactccagcctgggcaacaga
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19584795 354 - 122678785 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=460249.000000
s hg38.chr19_GL949751v2_alt     86733 206 +   1002683 gaaagaccctgtctcaaaaaaaaaaaa--aaatctcagatctgccactgctgagctctgag--cttgggtgcattacttaacctctctgagccttgattttctatacttgta--aaatagtagta--------atCTATTCCT-GGGGG-TGGATTAATGGCAGAGGCTCCAG------------------------TTGAGTCCGTTTGGGCCTTGGTGTCTGTCTGTTAAACAGGGTTTGGAAT
s panTro4.chr19              59020306 203 +  63644993 gaaagaccctgtctcaaaaaaaaaaaa-----tctcagatctgccactgctgagctctgag--cttgggtgcattacttaacctctctgagccttgattttctatacttgta--aaataggagta--------atCTATTCCT-GGGGG-TGGATTAACGGCAGAGGCTCCAG------------------------TTGAGTCCGTTTGGGCCTTGGTGTCTGTCTGTTAAACAGGGTTTGGAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55897016 200 +  60714840 gcaagaccctgtctcaaaaaaaaa--------tctcagatctgccactgctgagctctgag--cttgggtgcattacttaacctctctgagccttgattttctatacttgta--aaataggagta--------atCTATTCCTGGGGGG-TGGATTAACAGCAGAGGCTCCAG------------------------TTGAGTCCGTTTGGG-CTTGGTGTCTGTCTGTTAAACAGAGTTTGGAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102660902 204 - 106955855 gcaagaccctgtctcaaaaaaaaaaaaaaaaatctcagatctgccactgctgagctctgag--cttgggtgcattacttaacctctctgagccttgattttctatacttgta--aaatagaagta--------atCTATTCTT-GGGGG-TGGATTAACAGAAGAGGCTCCAG------------------------TTGAGTCCGTTTGGGCCTTGG----TGTCTGTTAAACAGGGTTTGGAAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946336 200 +  64156825 gcaagaccctgtctcaaaaaaaaa--------tctcagatctgccactgctgaactctgag--cttgggtgcattacttaacctctctgagcctttattttctacgctagta--aaataggaata--------atCTATTCCT-GGGGG-TGGATTAAGAGCAGAGGCTCCAA------------------------TTGAGTCCATTTGGGCCTTGGTGTCCATCTGTTAAGCAGGGTTTGGAAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54950308 200 +  59248254 gcaagaccctgtctcaaaaaaaaa--------tctcagatctgccactgctgaactctgag--cttgggtgcattacttaacctctctgagcctttattttctacgctagta--aaataggaata--------atctattcct-gGGGG-TGGATTAAGAGCAGAGGCTCCAA------------------------TTGAGTCCATTTGGGCCTTGGTGTCCATCTGTTAAGCAGGGTTTGGAAT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46787699 199 +  50890351 gcaagaccctgtctcaaaaaaaca--------tctcagatctgccactgctgagctctgag--cgtgggtgcattacttaacctctctgagcctttattttctatgctagta--aaacagaaata--------atctattcct-gGGGA-TGGA-TAAGAGCAGAGGCTCCAA------------------------TTGAGTCCGTTTGGGCCTTGGTGTCCATCTGTTAAACAGGGTTTGGAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45356554 207 +  49145316 gcgagaccccatctcacaaaaag---------tttcaggtctgccactgctgagctctgtg--cttcggtgtgttacttaacctctctgagccttaattttctatacttgt---aaatagacgtaataacaggatctattcct-gggggctgGATTAAGAGCAGAGGCTCCAG------------------------TTGAGTCCCTTTGGGCCTGGGTGTCCATATGTTAAACAGAGTTTGGAAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19585149 219 - 122678785 gaaagacctgggttcaaa--------------tcccag-cctgccact-ctcagctgtgtgaccttgggcaagttacctaacctatcttagtcttgcatttcaccacctgtcttgaata-acgcc--------acctgttctaatggga-cagattaagagcagaaaatcaaatgccagatacatttgagcaaatgcttGAGTCCCTCTGGACCT-GGTATTTGTGTGCTAAACAGGGCTTGGGGT
i canFam3.chr1              I 354 I 632
e mm10.chr7                   3627084 1545 + 145441459 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=10696.000000
s hg38.chr19_GL949751v2_alt     86939 4 +   1002683 ATGC
s panTro4.chr19              59020509 4 +  63644993 ATGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55897216 4 +  60714840 ATGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102661106 4 - 106955855 ATGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946536 4 +  64156825 ATGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54950508 4 +  59248254 ATGC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46787898 4 +  50890351 ATGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45356761 4 +  49145316 ATGC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19585368 632 - 122678785 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=165698.000000
s hg38.chr19_GL949751v2_alt     86943 66 +   1002683 CCCTGGCCTCT-----AGCCTTCCTCCTTACAGAACTCCCCAATACTGTCATTAAGAATTGAggccagatg
s panTro4.chr19              59020513 66 +  63644993 CCCTGGCCTCT-----AGCCTTCCTCCTTACAGAACTCCCCAATACTGTCATTAAGAATTGAggccagacg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55897220 66 +  60714840 CCCTGGCCTCT-----AGCCTTCCTCCTTACAGAACTCCCCAACACTGTCATTAAGAATTGAggccagatg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102661110 66 - 106955855 CCCTGGCCTCT-----AGCCTTCCTCCTTACAGAACTCCCCAACACTGTCATCAAGAATTGAggccagatg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946540 66 +  64156825 CCCTGGCCTCT-----AGCCTCCCTCCTTACAGAACTTCCCAACACTGTCATCAAGAGTTGAggccaggtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54950512 66 +  59248254 CCCTGGCCTCT-----AGCCTCCCTCCTTACAGAACTTCCCAACACTGTCATCAAGAGTTGAggccaggtg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46787902 66 +  50890351 CCCTGGCCTCT-----AGCCTCCCTCCCTACGGAACTTCCCAACACTGGCATTAAGAGTTGAggccaggtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45356765 58 +  49145316 CCC-------------AGCCTCCCTCCTTACAGAACTCCCTAGCGCCGTCATTAAGAGCTGAggccaggtg
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19586000 65 - 122678785 CCCAGGCCACTACACCAGCCTCCCTTCTTTCCCAGCTCCCCAACACCACCATTA------GGGGTCAGATG
i canFam3.chr1              I 632 I 483
e mm10.chr7                   3627084 1545 + 145441459 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=196402.000000
s hg38.chr19_GL949751v2_alt     87009 82 +   1002683 tggtggctcatgcctgtaatcctagcattttgggaggtcaaggcgagtggatcacttgaggtcaggagttcaagaccagcct
s panTro4.chr19              59020579 82 +  63644993 tggtagttcatgcctgtaatcctagcattttgggaggtcaaggcgagtggatcacttgaggtcaggagttcaagaccagcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55897286 82 +  60714840 cggtggctcatgcctgtaatcctagcattttgggaggtcaaggcgagtggatcacttgaggtcaggagttcaagaccagcct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102661176 82 - 106955855 cggtggctcatgcctgtaatcctagcattttgggaggtcaaggcgagtggatcacttgaggtcaggagttcaagaccagcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946606 82 +  64156825 tggtggctcatgcctgtaatcctagcattttgggaagccaaggtgagtggatcacttgaggtcaggagttcaagaccagcct
i rheMac3.chr19             C 0 I 281
s macFas5.chr19              54950578 82 +  59248254 tggtggctcatgcctgtaatcctagcattttgggaagccaaggtgagtggatcacttgaggtcaggagttcaagaccagcct
i macFas5.chr19             C 0 I 278
s chlSab2.chr6               46787968 82 +  50890351 cggtggcttatgcctgtaatcctagcattttgggaggccaaggtgaggggatcacttgaggtcaggagttcaagaccagcct
i chlSab2.chr6              C 0 I 286
s calJac3.chr22              45356823 82 +  49145316 caatggctcatgcctgtaatcctagtatttggggaagccaaggcgaggggttcccttgaggtaaggaactcaagaccagcct
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19586065 483 - 122678785 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=365974.000000
s hg38.chr19_GL949751v2_alt     87091 466 +   1002683 gggcaacatggcaaaaccccatctctacaaaaagtacaaaaattagccaggtgtggtggtgtgtgcctgtagtcccagctattttgggggctgaggcaggaggactgcttgaacctgggagactgaggctgcaatgagctgagattgcgccactgcactccagctttggtgacaaagtgagaacctgtctcaagaaa---gagaaaaagaGTTGAAggccaggcgtggtggctcaagcctgtaatcccagcaccttgggaggctgaggtgggcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatagaaaaattagctgggtgtggtggcgggcgcctgtaatcccagctactagggaggctgagtcaggagaatcacttgaacccaggaggtggaggttacagtgagctgagatggtgccattgcactcca
s panTro4.chr19              59020661 452 +  63644993 gggcaacatggcaaaaccccgtctctacaaaaagtacaaatattagccaggtgtggtggtgtgcgcctgtagtcccagctattttgggggctgaggcaggaggactgcttgaacctgggagatggaggctgcaatgagctgagattgtgccattgcactccagc-------acaaagtgagaacctgtctca----------gaaaaagaGTTGAAggccaggcatggtggctcaagcctgtaatcccagcaccttgggaggctgaggtgggcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcaggcgcctgtaatcccagctactagggaggctgagtcaggagaatcactcgaacccaggaggtggaggttacagtgagctgagatggtgccattgcactcca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55897368 465 +  60714840 gggcaacatggcaaaacctcatctctacaaaaagtacaaaaattagccaggtgtggtggtgtgcgcctgtagtcccagtttttttgggggctgaggcaggaggactgcttgaacctgggagat-gaggctgcaatgagctgagactgtgccactgcactccagctttggtgacaaaatgagaccctgtctcaaaaaa---gagaaaaagaGTTGAAgaccaggcatggtggctcaagcctgtaatcccagcaccttgggaggctgaggcaggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcaggcgcctgtaatcccagctactagggaggctgagtcaggagaatcacttgaaccccggaggtggaggttacagtgagctgagatggtgccattgcactcca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102661258 439 - 106955855 gggcaacatggcaaaaccccatctctacaaaaagtacaaaaattagccaggtgtggtggtgtgcacctgtagtcccagctatttcaggggctgaggtagaaggactgcttgaacctgagagatcgaggctgcagtgagctgagattgcgccactgcactccagctttggtgacaaagtaagaccctgtctcaaaaaa---gagaaaaagaGTTGAAggccaggtgtggtggctcaagcctgtaatcccagcaccttgggaggctgaagcggtcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtttctactaaaaatacagaaattagctgggtgtggtggc---------------------------aggctgagtcaggagaatcgcttgaacccaggaggtggaggttacagtgagctgagatggtgccattgcactcca
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45356905 464 +  49145316 gggcaacatggcgaaaccccagctctacaaaaagtacaaacgttagccaggtgtg-----gtgtgcctgtagtccccgctgttttgggggctgaggcaggaggattgcttgaacctgggaggttgaggctgcagtgagctgagattgcaccactgcactccagctttggtgacaaagtgagacgctgcctcaacaaagaggaggaaaaaaGCTGAAggccaggcgtggtggctcacacctgtaatcccagcaccttgggaggctgaggtgggtggatcacctgagatcaggagtttgagaccagcctggccaacgtggtgaaacgccggctctactaaaaatacaaaaattcgttgggtgtggtggcacacacctgtagtcccagctactcgggagactgaggcaggagaatcacctgaacccaggaggtggaggttacagtgagcaaagatggcaccactgcactcca
i calJac3.chr22             C 0 I 2105
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19586065 483 - 122678785 I
e chlSab2.chr6               46788050 286 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54950660 278 +  59248254 I
e rheMac3.chr19              59946688 281 +  64156825 I

a score=326476.000000
s hg38.chr19_GL949751v2_alt     87557 633 +   1002683 gcctgggagacaagagcgagactccacctcaaaaaaaaaaaaaaaaaaaaaaaaaaagttgaattatttcccccaaaagagggtgttgaggctttaacccccagtacctcaggatcaccttatatggagacagtgtcgttacaaaagtaatcaagttcaaatgaagccagtgggtgggccctaatccagtatgactggagtccttataaaaagggtaaattgggacacagacacacacacaggg--agcagcaatgtgaagatgaaggcggagatcagggtgatgtttgtacgtgccaatgactgccagaaacctccagaagccaggggagaggcctggaagattctcacaaccctgtcgacaccttgccttggatgtctagcctccagaactgtcagacaggaatttctgtgcttgagggaccctatttgtgataagttctgggagtccaagcagactaatacaACTGTCTTCAGAGtttcaggcatccagacctgatgctgttcctcccccatttgaaacccttcagtggctccttcactctcaagg-aaaaaaaaatatccagacttcttgtcctggtgttcctggcctgccaagatctgagccctgcctgctgtttaatcctcatTGATTGA
s panTro4.chr19              59021113 632 +  63644993 gcctgggagacaagagcgagactccacctcaaaaaaaaaaaaaaaaaaaaaaga---gttgaattatttcccccaaaagagggtgttgaggctctaacccccagtacctcaggatcaccttatatggagacagtgtcgttacaaaagtaatcaagttcaaatgaggccagtgggtgggccctaatccagtatgactggagtccttataaaaagggtaaattgggacacacacacacacacagaggcagcagcaatgtgaagatgaaggcggagatcagggtgatgtttctacgtgccaatgactgccagaaacctccagaagccaggggagaggcctggaagattctcacaaccctgtcgacaccttgccttggacgtctagcctccagaactgtcagacaggaatttctgtgcttgagggaccctatttgtgataagttctgggagtccaagcaaactaatacaACTGTCTTCAGAGtttcaggcatccagacctgatgctgttcctcccccatttgaaacccttcagtggctccttcactctcaagg-aaaaaaaaatatccagacttcttgtcctggtgttcctggcctgccaagatctgagcccTGCCTGCTGTTTAATCCTCattgattga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55897833 619 +  60714840 gcctgggagacaagagcgagactccatctcaaaaaaaaaga----------------TttgaattatttcccccaaaagagggtgttgaggctctaacccccagtacctcaggatcgccttatatggaggcagtgtcgttacaaaagtaatcaagttcaaatgaagccagtgggtgggccctaatccagtatgactggagtccttataaaaaggggaaattgggacacagacacacacacagagggagcagcaatgtaaagatgaaggcggagatcagggtgatgtttctacgtgccaatgactgccagaaacctccagaagccaggggagaggcctggaagattctcacaaccctatcgacaccttgccttggacgtctagccttcagaactgtcagacaagaatttctgtgcttgagggaccctgtttgtgataagttctgggagtccaagcaaactaatacaACTGTCTTCAGAGtttcaggcatccagacctgatgctgtccctcccctgtctgaaacccttcagtggctccttcactctcaaag-aaaaaaaaatatccagacttcttgtcctggtgttcctggcctgccaagatctgagcccTGCCTGCTGTTTAATCCTCattgattga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102661697 620 - 106955855 gcctgggagacaagagcgagactccatctcaaaaaaaaaga----------------GTGCaattatttcccccaaaagagcatgttgaggctctaacccccagtacctcaggatcaccttatatggagacagtgtcgttacaaaagtaatcaagttcaaatgaagccagtgggtgggccctaatccagtatgactggagtccttataaaaaggggaaattgggacacagacacacacacagagggagcagcaatgtgaagatgaaggcggtgatcagggtgatgtttctacgtgccaatgactgccagaaacctccagaagccaggggagaggcctggaagattctgataatcctgtcgacaccttgcctgggacgtctagcctccagaaccgtcagacaggagtttctgtgcctgagggaccctgtttgtgatacgttctgggagtccgagcaaacgaatacaACTGTCTTCAACGtttcaggcatccagacctgatgctgtccctcccccgtttgaaacccttcagtggctccttcactctcaaggaaaaaaaaaatatccagacttcttgtcctggtgttccttgcctgccaagatctgagcccTGCCTGCTGTTTCATCCTCACTGATTGA
i nomLeu3.chr10             C 0 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19586065 483 - 122678785 I
e calJac3.chr22              45357369 2105 +  49145316 I
e chlSab2.chr6               46788050 286 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e macFas5.chr19              54950660 278 +  59248254 I
e rheMac3.chr19              59946688 281 +  64156825 I

a score=2992.000000
s hg38.chr19_GL949751v2_alt     88190 8 +   1002683 TTGATTGA
s panTro4.chr19              59021745 8 +  63644993 ttgattga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55898452 8 +  60714840 ttgattga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102662317 6 - 106955855 TTGAtt--
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54950938 8 +  59248254 ttgttttg
i macFas5.chr19             I 278 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19586065 483 - 122678785 I
e calJac3.chr22              45357369 2105 +  49145316 I
e chlSab2.chr6               46788050 286 +  50890351 I
e papAnu2.chr19              47083863 393 +  51301725 I
e rheMac3.chr19              59946688 281 +  64156825 I

a score=12034.000000
s hg38.chr19_GL949751v2_alt     88198 11 +   1002683 tt------------ttgagacgg
s panTro4.chr19              59021753 19 +  63644993 tt----gattgattttgagacgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55898460 23 +  60714840 ttgattgattgattttgagacgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102662323  9 - 106955855 --------------ttgagacgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946969 11 +  64156825 ------------ttttgagacgg
i rheMac3.chr19             I 281 C 0
s macFas5.chr19              54950946 11 +  59248254 ------------ttttgagacgg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46788336 11 +  50890351 ------------ttttgagacgg
i chlSab2.chr6              I 286 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19586065 483 - 122678785 I
e calJac3.chr22              45357369 2105 +  49145316 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=558783.000000
s hg38.chr19_GL949751v2_alt     88209 262 +   1002683 agtctcactctgtcacccaggctggagtacagcagcatgatcttggctcactgcaacctccgccttccgggttcaagcaattctcatgcctcagcctccctagtagctgcgactacaggtgcgcaccaccacacctggctaattttttt-gta-ttttagtaga---gatggggtttcaccatgttggccaggctggtctcgaactcctaacctcaggtgatccgcctgcctcagcctccca--gtgctaggattacaa--------------------------------gcgtgagcca
s panTro4.chr19              59021772 263 +  63644993 agtctcactctgtcacccaggctggagtacagcagcatgatcttggctcactgcaacctccgcctcccgggttcaagcaattctcatgcctcagccccccgagtagctgcgactacaggtgcgcaccgccacacctggctaattttttttgta-ttttagtaga---gatggggtttcaccgtgttggccaggctggtctcgaactcctaacctcagatgatccgcctgcctcagcctccca--gtgctaggattacaa--------------------------------gcgtgagcca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55898483 264 +  60714840 agtctcactctgtcacccaggctggagtatggcagcatgatcttggctcactgcaacctccacctcccgggttcaagcaattctcatgcctcagcctcccgagtagctgggactacaggcgcacaccaccacacctggctaattttttt-gta-ttttagtaga---gacggggtttcaccatgttggccaggctggtctcgaactcctaacctcaggtgatccgcctgcttcagcctcccacggtgctgggattacag--------------------------------gcatgagcca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102662332 264 - 106955855 agtctcactctgtcacccaggctagagtacagcagcatgatcttggctcactgcaacctccacctcccgggttcaagcaattctcatgcctcagcctcccaagtagctgggactacaggcgtgcaccaccacacctggctaattttttt-gta-ttttagtaga---gacggggtttcaccatgttggccaggctggtctttaactcctaacctcaggtgatccgcctgcctaagcgtcccacagtgctgggattacag--------------------------------gcatgagcca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59946980 295 +  64156825 agtcttactctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgccttagcctcccaagtagctgggattacaggcacataccaccacatccggctaatttttt--gta-ttttagtaga---gacggggtttcaccatgttggccaggctggtcttgaactcctaaccttgggtgatctgcctgcctcagcctcccacagtgctggggttacaggcatgagccaccgcgcctggccCACCCTCAAGGCATGAGCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54950957 263 +  59248254 agtcttactctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgccttagcctcccaagtagctgggattacaggcacataccaccacatccggctaatttttt--gta-ttttagtaga---gacggggtttcaccatgttggccaggctggtcttgaactcctaaccttgggtgatctgcctgcctcagcctcccacagtgctggggttacag--------------------------------gcatgagcca
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46788347 263 +  50890351 agtcttactctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcctcctgggttcaagcaattctcctgccttagcctcccaagtagctgggattacaggcacataccaccacgtccggctaatttttt--gta-ttttagtaga---gaaggggtttcaccatgttggccaggctggtctcgaactcctaaccttgggtgatctgcctgcctcagccttccacagtgctggggttatag--------------------------------gcatgagcca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45359474 266 +  49145316 agtcttactctgtcacccagggtggagtgctatggcatgatctcggctcactgcaacctccacctcctgcgttcagccagttcttacgcctcagcctcacaagtagctgggacgacaggtgcacaccaccacacctggttaactcttt--gtatttttagtggagatgatggggtttcatcatgttggccaggctggtctggaactcctgaccttaggtaattctcatgccttggcctcccaaag-gctgggattacag--------------------------------gcctgagcca
i calJac3.chr22             I 2105 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e canFam3.chr1               19586065 483 - 122678785 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=613780.000000
s hg38.chr19_GL949751v2_alt     88471 273 +   1002683 ccatgcccagccCAT---CCTTATTCTcagcaaggaggctattgcagtcattcagcccagac-agctggagtttgca-atggcagccatagggatggaggagaggagaagggtcCAGAGACACTCAAGAGGCGGAATGAATGAGTCGAGAGGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCTTGGGC-TTTCACCTGTGAGCGGTGCCACGCATTGAGAGGCCCCCGGGAGACATCAGAGAACCCATCTGCGTTGTCAGGGAAGCTCCACG
s panTro4.chr19              59022035 273 +  63644993 ccatgcccagccCAT---CCTTATTCTCAGCAAGGAGGCTATTGCAGTCATTCAGCCCAGAC-AGCTGGAGTTTGTA-GTGGCAGCCATAGGGATGGAGGAGAGGAGAAGGGTCCAGAGACACTCAAGAGGCAGAATGAATGAGTCGAGAGGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCTTGGGC-TTTCACCTGTGAGCGGTGCCACGCATTGAGAGGCCCCCGGGAGACATCAGAGATCCCATCTGCGTTGTCAGGGAAGCTCCACG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55898747 272 +  60714840 ccacgcccagccCAT---CCTCATTCTCAGCAGGGAGGCTATTGCAGTCATTCAGCCCAGAC-AGTTGGAGTTTGCA-GTGGCAGCCGT-GGGATGGAGGGGAGGAGAAGGGTCCAGAGACACTCAAGAGGCAGAATGAATGAGTCGAGAGGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCTTGGGC-TTTAACCTGTGAGCGGTGCCACGCATTGAGAGGCCCCCGGGAGACATCAGAGAACCCATCTGCGTTGTCAGGGAAGCTCCACG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102662596 273 - 106955855 ccacgcccagccCAT---CCTCATTCTcagcaaggaggctattgcagtcattcagcccagac-agttggagtttgca-gtggcagccgtagggatggaggggaggagaagggtccagagacattcaagaggcagaatgaaTGAGTCGAGAAGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCCTGGGC-TTTCACCTGTGAGCGGTGCCATGCATTGAGGGGCCCCCGGGAGACATCAGAGAACCCATCTGCGTTGTCAGGGAAGCTCCACG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59947275 275 +  64156825 CCGTGCCTGGCCCAC---CCTCGTTCTCAGCAAGGAGGCTGATGCAGTCATTCAGCCTAGAC-AGCTGGAGTTGGAGTTTGGCAGCCGTGGGGATGGAGGGAAGGAGAAGGGTCCAGAGACATGCAAGAGGCAGAATGAATGAGTCGAGAGGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCCTGGGCTTTTTACCTGTGAGCGGTGCCACACATTGAGAGGCCCCCAGGAGACATCGGAGGACCCATCTGGGTTGTCAGGGAAGCTCCACG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54951220 274 +  59248254 ccgtgcctggccCAC---CCTCATTCTCAGCAAGGAGGCTGATGCAGTCATTCAGCCTAGAC-AGCTGGAGTTGGAGTTTGGCAGCCGTGGGGATGGAGGGAAGGAGAAGGGTCCAGAGACATGCAAGAGGCAGAATGAATGAGTCGAGAGGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCCTGGGC-TTTTACCTGTGAGCGGTGCCACACATTGAGAGGCCCCCAGGAGACATCGGAGGACCCATCTGGGTTGTCAGGGAAGCTCCACG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46788610 274 +  50890351 ccgcgcATGGTCCAC---CCTCATTCTCAGCAAGGAGGCTGATGCAGTCATTCGGCCCAGAC-AGCTGGAGTTGGAGTTTGGCAGCCGTGGGGATGGAGGGAAAGAGAAGGGTCCAAAGACATGCAAGAGGCAGAATGAATGAGTCGAGAGGAGTGAATCCTGGCAGGGGTATGGGAGATGTGAAGAGCCTGGGC-TTTCACCTGTGAGCGGTGCCACACATTGAGAGGCCCCCAGGAGACATCGGAGGACCCATCTGGGTTGTCAGGGAAGCTCCACG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45359740 243 +  49145316 caatgcctggGCCAT--CCCTCATTCTCAGCAGGGAGGCTGGTGCAGTCATTCACCCTAGACAAACTGGAGTTTGCC-ATGGCAGCCGTGGGGATGGAGG-----------------------------GTCAGAATGAATGGGTCGAGAGGAGTGAACCCTGGCAGGGGCATGGGAGATGTGAAGAGCCTGGAC-TTTCACCTGT---CTCTACTACCTATTGAGAGACCCCTGGGAGACATCACAGCACCCATCTGGGTTGTCAGGGAAACTCCACA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19586548 229 - 122678785 CCAGGCCAACCGCATGCTCCTCATTCTCACCGAGGA-GCTGATGCAGTGATGCAGCTGAG---AACCTGTGTCTGGG-GCAGAAGCCATGGGGATGG-GGGCAGGGGAAGGATTC-----------------------AACAGGACAGGAGGACCTGA---TGAGAAGGGTACAGGAGACTTGAAAAGTCTGATC-----AGCGGGGAACA-----------TGAGAGGCACCTA-CAAACATCAGTGAGCTGAGCTGGGTCACCAGGGATGCTCAGA-
i canFam3.chr1              I 483 C 0
e mm10.chr7                   3627084 1545 + 145441459 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=980645.000000
s hg38.chr19_GL949751v2_alt     88744 313 +   1002683 GGAGATGGCCCttccaggggcccggcacagggccagacacataatg---------catgctaaatgactgaat----atataagctaaatgactgaatATATCAGCAAGCCAAGAAAGGCTGGGCATGTGGAAAGGCAGAGATTGC--------GGGGGGCGGTAGTTTAGGCCAGGGGACCCCAAAACCGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGTGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
s panTro4.chr19              59022308 308 +  63644993 GGAGATGGCCCttccaggggcccggcacagggccagacacataatg---------catgctaaatgactgAAT----ATATAAGCGGAA-----GATTCCTTCAGCAAGCCAAGAAAGGCTGGGCATGTGGAAAGGCAGAGATTGC--------AGGGGGCGGTAGTTTAGGCCAGGGGACCCCAAAACAGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGGCCTAGTGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55899019 308 +  60714840 GGAGATGGCCCttccaggggcccggcacagggccagacacataatg---------catgctaaatgactgAAT----ATATAAGCGGAA-----GATTCCTTCAGCAAGCCAAGAAAGGCTGGGCATGTGGAAAGGCAGAGATTGC--------GGGGGGCGGTAGTTTAGGCCAGGGGACCCCAAAACAGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGTGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGTTCCCGGAGCCCTGAGCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102662869 309 - 106955855 GGAGATGGCCCTTCCCGGGGCCCAGCGCAGGGCCAGAGACATAATG---------CATGCTAAATGACTGAAT----ATATAAGCGGAA-----GATTCCTTCAGCAAGCCAAAAAAGGCTGGGCATGTGGAAAGGCAGAGATTGC-------GGGGGGGCGGCAGTTTAGGCCAGGGGACCCCAAAACAGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGTGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59947550 312 +  64156825 GGAGATGGCCCTTCCAGGGCCTTGGCATAGGGCCAGACACATAATG---------CATGCTAAATGAGTGAATATACATATAAGTGGAG-----GATTCCTTCAGCAAGCCAAGAAAGGCTGGGCGTGTGGAAAGGCAGAGATTGC--------GGGGGGCGGTAGTTTACGCCAGGGGACCCCAAAACGGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAATGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54951494 312 +  59248254 GGAGATGGCCCTTCCAGGGCCTTGGCATAGGGCCAGACACATAATG---------CATGCTAAATGAGTGAATATACATATAAGTGGAG-----GATTCCTTCAGCAAGCCAAGAAAGGCTGGGCGTGTGGAAAGGCAGAGATTGC--------GGGGGGCGGTAGTTTACGCCAGGGGACCCCAAAACAGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAATGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46788884 312 +  50890351 GGAGATGGCCCTTCCAGGGCCTTGGCACAGGGCCAGACACATAATG---------CATGCTAAATGAGTGAATATGCATATAAGCGGAG-----GATTCCTTCAGCAAGCCAAGAAAGGCGGGGCGTGTGGAAAGGCAGAGATTGC--------GGGGGGCGGTAGTTTACGCCAGGGGACCCCAAAACAGGGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGTGCCTGGTACTTTCTGCGATTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45359983 294 +  49145316 GGAGATGG-------AGCGGCCTGGCACAGGGCCAGACACATAGGG----------ATGCTAAATGAGTGAAT--------AAGCAAAA-----GATTCATTCAGCGAGCCAAGGAAGGCTGGGCATGTGGAGAGGCAGAGATGGC--------GGGGGGCAGTAGTTTAGGCCAGGGGACCCCAAAAC--GGGGATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGTGCCTGGTACTTTCTGCGGTTTAATTCCCGCTGGCGCCGCCGCCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGCCCTGAGCC
i calJac3.chr22             C 0 M 682
s mm10.chr7                   3628629 321 + 145441459 GGAAGAGACTACTTAGGGTGCCTGGCACAGACTTAGACCCACATGGATCTGTTCACTTGTTCAAGTACAAAaggaaagggaaaaagaag-----ga------catgaggaggaggaggaggcggtatgaggagggggtggTGTTGGCATCGGCAGCGAGGCGGCAGTTCTGGCGAGAGGACCCCCAAAT--GGGAATCCACACTTACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGTGCCTGGTACTTTCTACGATTTAGTTCCCGCTGGCGACGCCTTCGACCCCGGGCTGCCTCTTCCTCTTCATCTCGCTCCCGGAGTCCTGAATC
i mm10.chr7                 I 1545 C 0
s canFam3.chr1               19586777 282 - 122678785 GCACAGGGCTCTcccagtgcctt-gtatggtgcctgatacacaata---------ggtacAGAACCACTGAAC---------------------GATTCACTCAGCCAGGTAAGGAAGGC-AGGCATGTGGACA--------------------GAGAAGGGGTAATTTAGGCCAGGGGACCCCAGAACGGGGGAATCCGCACTCACCTACCTGCTCGATCTCCCGGCAGCGCCGACCTAGCACCTGGTACTTCCTACGATTTAGTTCCCGCTGGCGCCGCCGCTGGCCCCGGGCAGCCTCTTCCTCTTCATCTCGCTCCCGGAGACCTGAGCC
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47083863 393 +  51301725 I

a score=131739.000000
s hg38.chr19_GL949751v2_alt     89057 43 +   1002683 GCCCAGACCACCTGACACAAACTCCACTTCCGTCTCCAGCTCG
s panTro4.chr19              59022616 43 +  63644993 GCCCAGACCACCTGACACAAACTCCACTTCCGTCTCCAGCTCG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55899327 43 +  60714840 GCCCAGACCACCTGACACAAACTCCACTTCCGTCTCCAGCTCG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102663178 43 - 106955855 GCCCAGACCACCTGACACAAACTCCACTTCCGTCTCCAGCTCG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59947862 43 +  64156825 CCCCAGACCCCCTGACACAAACTCCACTTCCGTCTCCAGCTCG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54951806 43 +  59248254 CCCCAGACCCCCTGACACAAACTCCACTTCCGTCTCCAGCTCG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46789196 43 +  50890351 ACCCAGACCCCCTGACACAAACTCCACTTCCGTCTCCAGCTCG
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3628950 43 + 145441459 ACCCAGACCACCGGACACAAATTCCACTTCTGTCTCTAGCTCA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19587059 43 - 122678785 ACCCAGACCCCCGGACACGAACTCCACTTCCGTCTCCAGCTCA
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45360277 682 +  49145316 M
e papAnu2.chr19              47083863 393 +  51301725 I

a score=575990.000000
s hg38.chr19_GL949751v2_alt     89100 174 +   1002683 CTCTCCAGGATGTGGCCACCAAATAGGGGAGGCAACGCCAACTCTGAGCCTGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGAGGCAGGGAAAGGCTCAGGggccctggatcctggacccccagccccttctcccactgaaccaggagcccagacccc
s panTro4.chr19              59022659 174 +  63644993 CTCTCCAGGATGTGGCCACCAAATAGGGGAGGCAACGCCAACTCTGAGCCTGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGAGGCAGGGAAAGGCTCAGGggccctggatcctggacccccagccccttctcccactgaaccaggagcccagacccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55899370 174 +  60714840 CTCTCCAGGATGTGGCCACCAAATAGGGGAGGCAACGCCAACTCTGAGCCTGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGGGGCAGGGAAAGGCTCAGGggctctggatcctggacccccagccccttctcccactgaaccaggagcccagacccc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102663221 174 - 106955855 CTCTCCAGGATGTGGCCACCAAATAGGGGAGGCAACGCCAACTCTGAGCCTGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGGGGCAGGGAAAGGctcaggggccctggatcctggacccccagccccttctcccactgaaccaggagcccagacccc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59947905 174 +  64156825 CTCTCCAGGATGTGGCCCCCAAATAGGGGAGGCAGCGCCAACTCCGAGCCCGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGGGGCAGGGAAAGGGTCAGGggccctggatcctggactcccagtcccttctcccactgaaccaggagcccaaacccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54951849 174 +  59248254 CTCTCCAGGATGTGGCCCCCAAATAGGGGAGGCAGCGCCAACTCCGAGCCCGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGGGGCAGGGAAAGGGTCAGGggccctggatcctggactcccagtcccttctcccactgaaccaggagcccaaacccc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46789239 174 +  50890351 CTCTCCAGGATGTGGCCCCCAAATAGGGGAGGCAGCGCCAACTCCGAGCCTGGCGGCGCTGAGAACTCCTCAAAGCCCACGGCTGCCATGGTCCTGAGGGGCAGGGAAAGGCTCAGGggccctggatcctggactcccagtcccttctcccactgaaccaggagcccaaacccc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45360959 174 +  49145316 CTCTCCAGGATGTGGCCACCAAATAGGGGAGGCAACGCCAACTCTGAGCCTGGTGGCGCTGAAAACTCCTCAAAGCCCACGGCTGCCATGGTCCTAAGGGGCAGGGAAACGCTCAGGGGCCCTGGATCCTGgattctcagcccctcttcccattgaaccagcagcccaaacccc
i calJac3.chr22             M 682 I 513
s mm10.chr7                   3628993 170 + 145441459 CTTTCTAGGATGTGGCCACCAAACAGGGGAGGCAGAGCCAGCTCTGAGCCTGGTGGCGCTGAGAACTCTTCAAAGCCCACGGCTGCCATGGTCCTGTAGGGCCAAGAA--GTTTTAGGAGCCTATATTCTGGCTCTCCAAGTCC--CTCCCAGGGGGACTTAGGTCCAGGCCCC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19587102 135 - 122678785 CTCTCCAAAATGTGACCACCGAACAGCGGCGGCAGCGCCAGCTCCGAGCCTGGCGGCGCCGAGAACTCTTCAAAGCCCACGGCTGCCATGGTCCTGTAAGGTCAGTAG--GTTCAGGA-------ATCCTGAACCACCGGCCCC------------------------------
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47083863 393 +  51301725 I

a score=-11311.000000
s hg38.chr19_GL949751v2_alt     89274  4 +   1002683 aa-------------------------------------cc
s panTro4.chr19              59022833  4 +  63644993 aa-------------------------------------cc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55899544 41 +  60714840 aaccccttttccctcagacctgggagtccaggcccccagcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102663395 41 - 106955855 aaccccttttccctcagacctgggagtccaggcccccagcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59948079  4 +  64156825 ag-------------------------------------cc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54952023  4 +  59248254 ag-------------------------------------cc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46789413  4 +  50890351 ag-------------------------------------cc
i chlSab2.chr6              C 0 I 148
s calJac3.chr22              45361646  4 +  49145316 ag-------------------------------------cc
i calJac3.chr22             I 513 C 0
s mm10.chr7                   3629163  2 + 145441459 AG---------------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19587237  4 - 122678785 AG-------------------------------------CC
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47083863 393 +  51301725 I

a score=2904465.000000
s hg38.chr19_GL949751v2_alt     89278 1046 +   1002683 cctcctccc--------------------------------------------------------------------------tgagatcctagaatccaggcccccagcccctcctccctc---agaccgtagaatcca-gctcccag-ccctcctccctcagacccagaagtccaagtccgcaacccacccttcgcagcacccacagggttcaagccctgaccccc-tcctcccaggatgcaagagtccagacctccagactttttctctccaaggacc-cagggagtccaagccccaaccctcaaccagacgcaagagtcctggcttccaacctccta-gtctgtcagatccagcagtc---caaacccctaaccttctcctccctcagGAT-----------GACCCCAGT----CCATAAA---------------------------------------------------------------------------------AGGGTTCTAAGGTAAAGCAGTTGCATGAACTACAACCCCCATCAGACCTCAGCGTAAAAGCTCAT-ATGGTTGCACAC-AATGCAGCTGCACTGTTTTCTGGGATTCGCACTTTTTCACAAGGGCTCAGCCACATACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCGGGCCTCAGAGCTTCCGACCTCTTCAATCTGTAGGTTAAGCCGTTCGCAAAACTACTTGTCCCATCAGGCTCAGCAGCCGAGGACGGCGGGACGTGGCC-CTAGGCCTTGTGGGAGTTGTAGTTTCCTGTTTCCGGCTTCGCT-------TCGGCCCACCCCCACGTCCACCCCGAAT----CCCTGCTTAAAGGCCTTGCTTTCTTGTCTAACGCCGCAACCAGTCCTCTGAGTTGCCAACGTCTTTCTTCTTGTCTCGACGCCCCGTCGTCCGGCCACAGCGATTCTCTGCTTAGCAGGATCGGTCCACAGCGGGACGTGAGT---------CCCTTTCCTCCTCGCGGCTTACCGCCTCTCTCCGCCTAGTGCCAGGTGCTAATAAAGTTGTTGTTTCAAATGCGGCCAGGAACATCGCGA--GCGGGGACCAATCAGAGAGTAGCTTTGCCTCTATAACGGCGCGAGAGTGAGACGTCATCGGTGAGCGACTAACGCT-------------------AGAAACAGTGGTGCGCGGAGAGGAGAGGTGAGTGTGATGGAGACCA-CGGGGAGCGGGAGGC
s panTro4.chr19              59022837 1065 +  63644993 cctcctccc--------------------------------------------------------------------------tgagatcctagaatccaggcccccagcccctcctccctc---agaccgtagaatcca-gcccccag-ccctcctccctcagacccagaagtccaagtccgcaacccacccttcgcagcacccacagggttcaagccctgaccccc-tcctcccaggatgcaagagtccagacctccagactttttctctccaaggacc-cagggagtccaagccccaaccctcaaccagacgcaagagtcctggcttccaacctcctc-gtctctcagatccagcggtc---caaacccctaaccttctcctccctcagGAT-----------GACCCCAGT----CCATAAA---------------------------------------------------------------------------------AGGGTTCTAAGGTAAAGCAGTTGCATGAACTACAACCCCCATCAGACCTCAGCGTAAAAGCTCAT-ATGGTTGCACAC-AATGCAGCTGCACTGTTTTCTGGGATTCGCACTTTTTCACAAGGGCTCAGCCACATACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCGGGCCTCAGAGCTTCCGACCTCTTCAATCTGTAGGTTAAGCCGTTCGCAAAACTACTTGTCCCATCAGGCTCAGCAGCCGAGGACGGCGGGACGTGGCC-CTAGGCCTTGTGGGAGTTGTAGTTTCCTGTTTCCGGCTTCGCT-------TCGGCCCACCCCCACGTCCACCCCGAAT----CCCTGCTTAAAGGCCTTGCTTTCTTGTCTAACGCCGCAACCAGTCCTCTGGGTTGCCAACGTCTTTCTTCTTGTCTCGACGCCCCGTCGTCCGGCCACAGCGATTCTCTGCTTAGCAGGATCGGTCCACAGCGGGACGTGAGT---------CCCTTTCCTCCTCGCGGCTTACGGCCTCTCTCCGCCTAGTGCCAGGTGCTAATAAAGTTGTTGTTTCAAATGCGGCCAAGAACATCGCAA--GCGGGGACCAATCAGAGAGTAGCTTTGCCTCTATAACGGCGCGAGAATGAGACGTCATCGGTGAGCGACTAACGCTCTGGGAAAGCTTATTTCCTAGAAACAGTGGTGCGCGGAGAGGAGAGGTGAGTGTGATGGAGACCA-GGGGGAGCGGGAGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55899585 1065 +  60714840 cctcctccc--------------------------------------------------------------------------tgagatcctagaatccaggcccccagcccctcctccctc---agaccgtagaatcca-gcccccag-cccttctctctcagacccaggagtccaagtgcgcaactcccccttcgcaacacccacagggttcaagccctgaccccc-tcctcccaggatccaagagtccagacctccagactttttctctccaaggacc-caggcagtccaagccccaaccctcaaccagacgcaagagtcctggcttccagcctcctc-gtctctcagatccagcagtc---caaacccctaaccttctcctccctcagGAT-----------GACCCCAGT----CCATAAA---------------------------------------------------------------------------------AGGGTTCTAAGGTAAAGCAGTTGCATGAACTACAACCCCCATCAGACCTCAGCGTAAAAGCTCAT-ATGGTTGCACAC-AATGCAGCTGCACTGTTTTCTGGGATTCGCACTTTTTCACAAGGGCTCAGCCACATACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCGGGCCTCAGAGCTTCCAATCTGTTCAATCTGTAGGTTAAGCCGTTCGCAAAACTACTTGTCCCATCAGGCTCAGCAGCCGAGGACGGCGGGACGTGGCC-CTAGACCTTGTGGGAGTTGTAGTTTCTTGTTTCCGGCTTCGCT-------TCGGCCCACCCCCACGTCCACCCCGAAT----CCCTGCATAAAGGCCTTGCTTTCTTGTCTAACGCCGCAACCAGTCCTCTGAGTTGCCAACGTCTTTCTTCTTGTCTCGACGCCCCGTCGTCCGGCCACAGCGATTCTCCGCTTAGCAGGATCGGTCCACAGCGGGCCGTGAGT---------CCCTTGCCTCCTCGCGGCTTACCGCCTCTTTCCGCCTAGTGCCAGGTGTTAATAAAGTTGTTGTTTCAAATGCGGCCAGGAACATCGCGA--GCGGGGACTAATCAGAGA-TAGCTTTGCCTCTATAACGGCGCGAGAATGAGACGTCATCGGTGAGCGACGAACGCTCTGGGAAAGCTTATTTCCTAGAAACAGTGGTGCGCGGAGAGGAGAGGTGAGTGTGATGGAGACGAGGGGGGAGCGGGAGGC
i ponAbe2.chr19             C 0 M 672
s nomLeu3.chr10             102663436 1148 - 106955855 cctcttccc--------------------------------------------------------------------------tgagatcctagaatccaggcccccagcccctcctccctc---agaccgtagaatcca-gcccccag-ccctcctccctcagacccaggagtccaagtccgcaaccccgctttcgcagcacccacaaagttcaagccctgaccccc-tcctcccaggatgcaagagtccagacctccagactttgtctctccaaggacc-cagggagtccaagccccaaccctcaaccagacgcaagagtcctggcttccaacctcctc-gtctctcagatccagcagtc---caaacccctaaccttctcctccctcagGAT-----------GACCCCAGT----CCATAAAAGGGTTCTAAGGTAAAGCAGTTGCATGAAGGTCCATGAAGCAGTTGCATCTAAGGTCCCAGTCCAGACCCCAGTCCATAAAAGGGTTCTAAGGTAAAGCAGTTGCATGAACTACAACCCCCATCAGACCTCAGCGTAAAAGCTCATAATGATTGCATAC-AATGCAGCTGCACTGTCTTCTGGGATTCGCACTTTTTCACAAGGGCTCAGCCACATACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCGGGCCTCAGAGCTTCCAACCTCTTCAATCTGTAGGTTAAGCCCTTCGCAAAACTACTTGTCCCATCAGGGTCAGCAGCCGAGGACAGCGGGACGTGGCC-CTAGGCCTTGTGGGAGTTGTAGTTCCCTGTTTCCGGCTTCGCT-------TCGGCCTACCCCCACGTCCACCCCGAAT----CCCTGCTTAAAGGCCTTGCTTTCTTGTCTAACGCCGCAACCAGTCCTCTGAGTTGCCAACGTCTTTCTTCTTGTCTCGACGTCCCGTCGTCCGGCCACAGCGATTCTCCGCTTAGCAGGATCGGTCCATAGCGGGCCGTGAGT---------CCCTTTCCTCCTCGCGGCTTACCGCCTCTCTACGCCTAGTGCCAGGTGCTAATAAAGTTGTTGTTTCAAATGCGGCCAGGAACATCGCGA--GCGGGGACCAATCAGAAAGTAGCTTTGCCTCTATAACGGCGCGAGAGTGAGACGTCATCGGTGAGCGACGAACGCTCTGGGAAAGCTTATTTCCTAGAAATAGTGGTGCGCGGAGAGGAGAGGTGAGTGTGATCGAGACAAGAAGGGAGCGGGAGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59948083 1159 +  64156825 ccttttccctaagacctgggagtccaggcccccagctcctaatccctcagaccctagaatccaggcccccagcccctcctccctcagacccagggatccaggcccccagcccttcctccctc---agaccgtagaatccaggcccccag-ctctcctccctcagacccaggagaccaggtccccaacccctccttcgtagcacccacagggttcaagccctgaccccc-tcctcccaggatccaagagtccagacctccagactttttctctccaaggacc-cagggagtccaagccccaaccctcaaccagacgcaagagtcctggcttccaacctcctc-gtctctcagatccagcagtc---caaacccctagccttctcctccctcaggatgcaccagtccagaccccAGT----CCATAAA---------------------------------------------------------------------------------AGGGTTCTAAGGTAAAGCAGTTGCATGAACTACAACCCCCATCAGACCTCAGTGTAAAAGGTCAT-ATGGTTGCACAC-AATGCAGCTG--CTGTTTTCTGGGATTCGCAGTTTTTCACAAGGGCTCAGCCACTTACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCGGGCCTCTTAGCTTCCAACCTCTTAAATCTCTAGATTAAGCCGTTCACAAAACTACTTGTCCCATCAGGCTCAGGGGCCGAGGACGGCGGGACGTGGCC-CTAGGCCTTGTGGGAGTTGTAGTTTCCTGTTTCCGGCTTCGCT-------TTGGCCCACCCCGACGTCCAACCCGAAT----CCCTGCTTAAAGGCCTTGCTTTCTTGTCTAACGTCGCAACCAGTCCTCTGAGTTGCCAACGTCTTTCTTCTTGTCTCGACGCCCCGTCATCTGGCCACAGCAATTCTCCGCTTAGCAGGATTGGTCCACAGCGCGCCGTGAGTTCGATTAGCCCCTTTCCTCCTCGCTGCTTACCGCCTCTCTCCGCCTAGTGCCAGGTGCTAATAAAGTTGTTGTTTCAAACGCGGCCAGGAACATCGCGA--GCGGGGACCAATCAGAGCGTAGCTTTACCTCTATAACGGCGCGAGCATGAGACGTCATCGGTGAGCGACGAACGCTGTGGGAAAGCTTATTTCCTAGAAACAGTGGTGCGCGGAGAGGAGAGGTGAGTGTGATGGAGACGAGCGGGGAGCGGGAGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54952027 1159 +  59248254 ccttttccctaagacctgggagtccaggcccccagctcctaatccctcagaccctagaatccaggcccccagcccctcctccctcagacccagggatccaggcccccagcccttcctccctc---agaccgtagaatccaggcccccag-ctctcctccctcagacccaggagaccaggtccccaacccctccttcgtagcacccacagggttcaagccctgaccccc-tcctcccaggatccaagagtccagacctccagactttttctctccaaggacc-cagggagtccaagccccaaccctcaaccagacgcaagagtcctggcttccaacctcctc-gtctctcagatccagCAGTC---CAAACCCCTAGCCTTCTCCTCCCTCAGGATGCACCAGTCCAGACCCCAGT----CCATAAA---------------------------------------------------------------------------------AGGGTTCTAAGGTAAAGCAGTTGCATGAACTACAACCCCCATCAGACCTCAGTGTAAAAGGTCAT-ATGGTTGCACAC-AATGCAGCTG--CTGTTTTCTGGGATTCGCAGTTTTTCACAAGGGCTCAGCCACTTACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCGGGCCTCTTAGCTTCCAACCTCTTAAATCTCTAGATTAAGCCGTTCACAAAACTACTTGTCCCATCAGGCTCAGGGGCCGAGGACGGCAGGACGTGGCC-CTAGGCCTTGTGGGAGTTGTAGTTTCCTGTTTCCGGCTTCGCT-------TTGGCCCACCCCGACGTCCAACCCGAAT----CCCTGCTTAAAGGCCTTGCTTTCTTGTCTAACGTCGCAACCAGTCCTCTGAGTTGCCAACGTCTTTCTTCTTGTCTCGACGCCCCGTCATCTGGCCACAGCAATTCTCCGCTTAGCAGGATTGGTCCACAGCGGGCCGTGAGTTCGATTAGCCCCTTTCCTCCTCGCTGCTTACCGCCTCTCTCCGCCTAGTGCCAGGTGCTAATAAAGTTGTTGTTTCAAACGCGGCCAGGAACATCGCGA--GCGGGGACCAATCAGAGCGTAGCTTTACCTCTATAACGGCGCGAGCATGAGACGTCATCGGTGAGCGACAAACGCTGTGGGAAAGCTTATTTCCTAGAAACAGTGGTGCGCggagaggagaggtgagtgtgatggagacgagcggggagcgggaggC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46789565 1078 +  50890351 cctcctccc--------------------------------------------------------------------------tcagatccagggatccaggcccccagcccctcctccctc---agaccgtagaatccaggcccccag-ctctcctccctcagacccaggagaccaggtccccaacccctccttcgtagcacccacagggttcaagccctgacccccgtcctcccaggatccaagagtccagacctccagactttttctctccaaggacc-cagggagtccaagccccaaccctcgaccagacgcaagagtcctggcttccaacctcctc-gtctctcagatccagCAGTC---CAAACCCCTAGCCTTCTCCTCCCTCAGGATGCACCAGTCCAGACCCCAGT----CCATAAA---------------------------------------------------------------------------------AGGGTTCAAAG--------GTTGCATGAACTACAACCCCCATCAGACCTCAGTGTAAAAGCTCAT-ATGGTTGCACAC-AATGCAGCTG--CTGTTTTCTGGGATTCGCAGTTTTTCACAAGGGCTCAGCCACTTACCCTTCTCTCTGCTCCAATTCCATCTC---CGCGACCTCCGGAAGCCCCAGGCCTCTTAGCTTCCAATCTCTCAAATCTCTAGATTAAGCCGTTCGCAAAACTACTTGTCCCATCAGGCTCAGGGGCCGAGGACGGCGGGACGTGGCC-CTAGGCCTTGTGGGAGTCGTAGTTTCCTGTTTCCGGCTTCGCT-------TTGGCCCACCCCGACATCCAACCCGAAT----CCTTGCTTAAAGGCCTTGCTTTCTTGTCTAACGTCGCAACCAGTCCTCTGAGTTGCCAACGTCTTTCTTCTTGTCTCGACGCCCCGTCATCTGGCCACAGCAATTCTCCGCTTAGCAGGATTGGTCCACAGCGGGCCGTGAGTTCGATTAGCCCCTTTCCTCCTCGCTGCTTACCGCCTCTCTCCGCCTAGTGCCAGGTGCTAATAAAGTTGTTGTTTCAAACGCGTCCAGGAACATCGCGA--GCAGGGACCAATCAGAGCGTAGCTTTACCTCTATAACGGCGCGAGCATGAGACGTCATCGGTGAACGACGAACGCTGTGGGAAAGCTTATTTCCTAGAAACAGTGGTGCGCggagaggagaggtgagtgtgatggagaccagcggggagcgggaggC
i chlSab2.chr6              I 148 C 0
s calJac3.chr22              45361650 1083 +  49145316 cctcctcct--------------------------------------------------------------------------tcagaccctagaatcca-gcccccagcccctcctccctcagaagacccaggagtccaggtactcagcccctcctgccacagacccaggagtccaggtccccagcccctccttcccagcacccacagggttcaagccctgatcccc-t-ctcccaagatccaagagtccagacctccagactttttctctccaaggacc-cagggagtccaagtcccaaccctcacctagacgcaggagtccagggttccaacctcctc-gtc--tcagatccagcagta---caaacccctagccttctcctctctcgggatgcaccggtgcagacctcagc----ccATAAA---------------------------------------------------------------------------------AGGGTTCTAAGGTAAAGCTGCTGCAAGAACTACAACCCCCATCAGCCCTCAAAGTAAAAGGTCAT-ATGGTTGCACACAAATGTAGATGCAGTGTCTTCTGGGATTCGCAGTTTTTCACAAGGGCTCAGCCACTTACCCCTCTCTCTGCTCCAATTCCATCTC---CGCGAGCTCCGGGAGCCCCGCGCCTCACAACTTCCAACGTCTCAAATCTCTATGTTAAGCCGTTCCCAAAACTACTTGTCCCATCAGGCCCCGCGGCCGAGGACGGCGGGACGTGGCT-CTAGACCTTATGGGAGTTGTAGTTTCTTGTTTCCGGCTTCGCT-------TCCGCCAACCCCCACGTCCACCGCGAAT----CCCTACTTAAAGGCCTTGCGTTCTCATCTGAGGCCGCAACCAGTCCTCTGAGTTGCCACAGTCTTTCTTCTTGTCTCGATGCCCCGTCGTCCAGCCACAGCGATTCACCGCTTAGCAGGATCGGTCCACAGCGGGCCGTGAGTCTGATTAGCCCCT---CTCCTTGCTGCTTACCGCCTCTCTCCGCCTAGCGCCAGGTGCTAATAAAGTTGTTGTTCCAAACGCGGCCAGGAACGTCGCGA--ACGGGGACCAATCAGAGATCAGCTTTCCCTCGATAACGGCGCGAGTGTGAAACGTCATCGGTGAGCGACGAGCGCTCTGG--AAGCTTATTTCTTAGAAACCGTGGTGCGCAGGGAGGAGAGGTGAGTGTGGTAGAAACGAGGAGAGGGCGGGAGGC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3629165  926 + 145441459 -----------------------------------------------------------------------------------------CCTGGAGCCCAGATCCTAGCCCTCTCCTCCATC---ACACCCAGCAGCCCA-GACTCTAG-CCCTCCTCCCTCCTACCAAGAAGCCCAGACCCT--AGCCCTTCTTGGTCACTGCCA-GGGATCCAGGCCCCAGTCCTC-GTCCCTAACAAT---------------------------------GAGGAAT-CAG---ACCCTAGCCTCCTCCCTC----AGACTTTGGAGCCCACAC-TCCAATCTCCTT-G-CTCTCAGATCCATAAGAACAGCAAATTCCAAA------TCTCCCCTACGATGCTCCAGTACTGCCTCCGGTTCTCCCACAGA-----------------------------------------------------------------------------------GATTCGAAAAGAAAGCAACTGCACGAACT----TCCCCATCGTCCCTGAGAGCA-------CT-ACAGCCG------ATCGTTGCTG------TTTTTGGAGTCCCCG--TTTACACAA-AGCTCAGCTACTCACCCCTCTCTCTGTTCCAACTCCATTTC---TCTGGTCAAGAGACACCTCAAGCCTCAGAG---------------------AGGTGGAGTCTTGCGCAAAACTACCTCTCCCATCAGGCCTTGCGACACAGGAAAAC----------------------TGGGAATTAAAGTTTCCTA-CTCTGCCTTCGTT-------TGCACCCG-----------ACTCCAAAT----TGCGGCTTGAAGCCTTCGGTTTATCCTCTAGCGCCTGCACCGATCGTCCACGTTGTCACCTTCTTTACTCCTGTCTTGTCGCAGTGTCGACTAGCCAAAGCGAATCTCTGTTTAGCAGGCTCAATCCACGGCGACGTACGACTTCCCCTAGCCCTAGAACCCAGCACTCCCGGTCGCCGTCCCGCGA-----GGCGGCTGCTAATAAAGTTGTTG-TCCAAACGCTGCCGGAAATGTCGTAA--ACGG---CCAATCAAAACACAGATTTATCG----------GCGGCAAGTAAACGTCATCAAAGAGAGCCGAA-GCTCTGGGGAAGCAGATTTCTTGGAAACGATTGTGAGAGGATCGAAGCGGTGAGTGTGATGGAGAAGAAGGGATGGCCGGAAGC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19587241 1015 - 122678785 TCTCCTCCC--------------------------------------------------------------------------TCAGCCCCGGGAGTCCAGATCCCCAGCCCCTCCTCCCTC---AGACCCGGGAGTCC-----------CACT-----------------------------------------------------AGAGTTCGAGCCCCGACCCC--TCCTCCCAGGATCCAGGTGTCCATACCCCCAGACTT--GCTCCCCGAGGATCGCAGGGACTTCAAGCCCCCACTC------AGACCCAGGAGCCGGGGCCTCCAACCTCGTCTGTCTCTCAGATTCAGAACTC---C-AACTCCTAGCTTTTTTCCCCCT--GGACGTCCAAGCGCAGACCCCGGT----CCTTAAG---------------------------------------------------------------------------------AGGGCTC--AGCGAAAGCAGCTGCATGAACTACAATCCCCATCCGCCCTCAA-ATAAAAGCGCAG-ATGGGTGTACGC-GATGCAGCCGCAATGCCTTTTGGGAGCGGTAGTTTCCTCCAA------AGCCACTCACCCCTCTCTCTGCTCCAATTCCATGTCTCTCTCCAGCTCCAGCCGCCGCGGGTCTCAGAACGCCCAGCCTCGCAAACCTCTAGGTTAAGTCCTTCGCAAAACTACCTGTCCCATCGGGCTTCACGGCCTCGGCATCCGGGTCATTGCCGCTGGGTTTTCTGGGAATTGTAGTTCCCTGCTTCCGGCTTCGCTCCTTACCCCCGTCCACCTTCACCTCCACCCGGAGTTCCGCCCTGCTTAAAGGCCTTGCTTTCTCATCTCACTCCTTCCTCGGTCGTCTTAGTTGTCCCCGTCTTTATTCTTGTCTGGGCACCTTCTCA-CTGGCTAGGGCGATGCTCCGCTTAGCAGGCTCAGTACTCGGCGGGCCGTCAGCCCGACAAGTCCCTT--CTCCT--CTGCTTACC-CCCCTCTCCGCTTCGCTGCAGGAACTAATAAAGTTGTTGTTCCAAAGGCGTCCGGGAATGACGCGAGGGCGGGAGCCAATCAGAGCGCGGGTTTGACGCGACGCCGTCGCGAGCCTGGGACGTCATCAGTGGGCGCCGACCACTGTTCGGAAGCGACGCTCCTAGAAACCGTCGTGCGAGGCGGGGAGAGGTGAGTGTAAGCGAGACGAGGGGAGTG-GGGAGGC
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47083863  393 +  51301725 I

a score=62517.000000
s hg38.chr19_GL949751v2_alt     90324 29 +   1002683 TGGGCTCCTGGGTCTGGGAGAAGAAGTGT
s panTro4.chr19              59023902 29 +  63644993 TGGGCTCCTGGGTCTGGGAGAAGAAGTGT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102664584 29 - 106955855 CGGGCTCCTGGGTCTGGGAGAAGAAGCGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59949242 29 +  64156825 CGGACTCCTGGGTCTGGGAGAAGAAGTGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54953186 29 +  59248254 CGGACTCCTGGGTCTGGGAGAAGAAGTGT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46790643 29 +  50890351 CGGACTCCTGGGTCTGGGAGAAGAAGTGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45362733 25 +  49145316 CAGACTCCTGGGTCTGGGAGAAGA----C
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3630091 23 + 145441459 CAAGCTA------CTGGAGGAGAAAGTGT
i mm10.chr7                 C 0 I 232
s canFam3.chr1               19588256 29 - 122678785 CGGGCTCTCGGGTCCGGGGGCGGGAGTGT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55900650 672 +  60714840 M
e papAnu2.chr19              47083863 393 +  51301725 I

a score=42275.000000
s hg38.chr19_GL949751v2_alt     90353 21 +   1002683 GTGAGGAAAAAGGCGGGTCTT
s panTro4.chr19              59023931 21 +  63644993 GTGAGGAAAAAGGCGGGTCTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102664613 21 - 106955855 GTGAGGAAAAAGGCAGGCCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59949271 21 +  64156825 GTGAGGAGGAAGGCGGGCCTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54953215 21 +  59248254 GTGAGGAGGAAGGCGGGCCTT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46790672 21 +  50890351 GTGAGGAGGAAGGCGGGCCTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45362758 21 +  49145316 GTGAGGAGAAAGGCGGACCTT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19588285 21 - 122678785 GCAGGGAGAGAGACACACCTT
i canFam3.chr1              C 0 I 1428
e mm10.chr7                   3630114 232 + 145441459 I
e ponAbe2.chr19              55900650 672 +  60714840 M
e papAnu2.chr19              47083863 393 +  51301725 I

a score=434896.000000
s hg38.chr19_GL949751v2_alt     90374 262 +   1002683 TACAGCTTGGtttttgtttttttgttgtttgtttgttttgagacggagtctcgttctgttgcccaggttggagagcagtggcgcgatctcggctcattgcaacctccgtctcccgggttcaaacgattcttctgcctcagcctccagagtagctgggattacaggcgcccgccaccacccctgactaatttttgtatttttagtagagacggggtttccccatgttggtcaggctggtctcgaactcctgatctc--gtgatcc
s panTro4.chr19              59023952 262 +  63644993 TACAGCTTGGtttttgtttttttgttgtttgtttgttttgagacggagtctcgttctgttgcccaggttggagagcagtggcgcgatctcggctcattgcaacctccgtctcccgggttcaaacgattcttctgcctcagcctccagagtagctgggattacaggcgcccgccaccacccttgactaatttttgtatttttagtagagacggggtttccccatgttggtcaagctggtctcgaactcctgatctc--gtgatcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102664634 262 - 106955855 TACAGCTTGGtttttgtttttttgttgtttgtttgttttgagacggagtctcggtctgttgcccaggttggagagcagtggcgcgatctcggctcactgcaacctccgtctcccgggttcaaacgattctcctgcctcagcctccagagtagctgggattacaggcgcccgccaccacccctggctaatttttgtatttttagtagatacgtggtttccccatgttggtcaggctggtctcgaactcctgatctc--gtgatcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59949292 262 +  64156825 TACAGCTTGGtttttttgttgttgttgtttgtttgttttgagacggagtctcggtctgttgcctagggtggagtgcagtggcgctatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctccagaatggctgggattacaggcgcgcgccaccacgcccggctaatttttgtatttttagtagggacgaggtttccccatgttggtcaggctggtctcgaactcctgatctc--ttgatcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54953236 262 +  59248254 TACAGCTTGGtttttttgttgttgttgtttgtttgttttgagacggagtctcggtctgttgcctaggttggagtgcagtggcgcgatctcggctcactgcaacctccgtctccagggttcaaacgattctcctgcctcagcctccagaatggctgggattacaggcgcgcgccaccacgcccggctaatttttgtatttttagtagggacgaggtttccccatgttggtcaggctggtctcgaactcctgatctc--ttgatcc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46790693 258 +  50890351 TACAGCTGGGtttttttgttgttg----ttgtttgttttgagacggagtctcggtctgttgcctaggttggagtgcagtggcgcgatctcggctcattgcaacctccgtctccagggttcaaacgattctcctgcctcagcctccagagtagctgggatgacaggcgcgcgccaccacgcccggctaatttttgtatttttagtagggacgaggtttccccatgttggtcaggctggtctcgaactcctgatctc--ttgatcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45362779 247 +  49145316 TACAGtttgtttgttttttt---------------tcttgagacggagtctcactctgttgccccggct-gagcgcagtggcgcgatctcggctcactgcaacctccgcctcccgggttcaagcagtt-tcctgcctcagcctcccgagtagctgggataacaggcgcacggcaccacgcgcagctaatttttgtatttttagtagagacggggtttccccatgttggtcaggctggtgtcgaactcctgaccccaggtgatcc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3630114 232 + 145441459 I
e canFam3.chr1               19588306 1428 - 122678785 I
e ponAbe2.chr19              55900650 672 +  60714840 M
e papAnu2.chr19              47083863 393 +  51301725 I

a score=127922.000000
s hg38.chr19_GL949751v2_alt     90636 57 +   1002683 gcccgcctcggcctcccaaagtgctgtgattacaggcatga-tccaccgcgcctggcc
s panTro4.chr19              59024214 57 +  63644993 gcccgcctcggcctcctaaagtgctgtgattacaggcatga-tccaccgcgcctggcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55901323 58 +  60714840 gcccgcctcggcctcccaaagtgctgtgattacaggcgtgaccccaccgcgcctagcc
i ponAbe2.chr19             M 672 C 0
s nomLeu3.chr10             102664896 57 - 106955855 gcccgcctcggcctcccaaagtgctgtgattacaggcgtga-cccaccgcgcctggcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59949554 57 +  64156825 gcccgcctcggcgtcccaaagtgctgtgattacaggcgtgc-cccaccgcgcctggcA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54953498 57 +  59248254 gcccgcctcggcgtcccaaagtgctgtgattacaggcgtga-cccaccgcgcctggcA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46790951 57 +  50890351 gcccccctcgacgtcccaaagtgctgtgattacaggcgtga-cccaccgcgcctggcA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45363026 57 +  49145316 tcccacctcggcctcccaaagtgctgggattacaggcgcga-gacaccgagcctggcc
i calJac3.chr22             C 0 I 3219
e mm10.chr7                   3630114 232 + 145441459 I
e canFam3.chr1               19588306 1428 - 122678785 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=1311539.000000
s hg38.chr19_GL949751v2_alt     90693 751 +   1002683 AG---------ttgtttgtttgttttgtctgagacggagtttcgctcttgttgcccaggctggagtgcagtggcgcgatctcggttcactgcaacctccgcctcccggattcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcgcaccaccacgcccggctagttttttgtatttttagtagagacggggtttcactatgttggccaggctggtctccaactcctgacctcagatgatccacccgcctgggcctcccaaagtgctgggattacaggcatgagccaccgctcccggccTTTTACAGCCTGtttacccaaaagtcttaatatgcgcctaccatggtgtggccctggggatgtggaaggagcaaaaattgttcgctaccctcttagagctttggttgatgcctggcagaca--------------------------------------------------------------ggctttatcaaataattacttcattaatcacaaatgtgtgaagtgccttactgtagacacgcagagcgtgcgggacacgttatcacaaagcaacctcctgtagtctagagtggggcgtgtgggtcagggaggtggaacgtgagagctgaaggctgaggagatgctgggctactaagaagtgaggagagccagacgccatggctcactcctgtaatcccagcactttgggtggcccaggcgaaaggatcgcttgagcccaggagtttgagaccagcctgagcaacacagtgagaccctgtctctacagaaaaatttaaaaattagc
s panTro4.chr19              59024271 736 +  63644993 AA---------ttgtttgtttgttttgtctgagacgaagtttcgctcttgttgcccaggctggagtgcagtggcgcgatctcggttcactgcaacttccgcctcccggattcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcgcaccaccacgcccggctagttttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctccaactcctgacctcaggtgatccacccgcctgggcctcccaaagtgctgggattacaggcatgagccaccgctcccggc-TTTTACAGCCTGtttacccaaaagtcttaatatgcgcctaccatggtgtggccctggggatgtggaaggagcaaaaattgttcgctaccctcttagagctttggttgatgcctggcagaca--------------------------------------------------------------ggctttatcaaataattacttcattaatcacaaatgtgtgaagtgccttactgtagacacgcagagcgtgcgggacacgttatcacaaagcaacctcctgtagtctagagcggggcgtgtgggtcagggaggtggaacgtgagagctgaaggctgaggagatgctgggctactaagaagtgaggagagccggacgccatggctcactcctgtaatcccagcactttgggtggcccaggcgaaaggatcgcttgagcccag--------------cctgagcaacacagtgagaccctgtctctacagaaaaatttaaaaattagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55901381 760 +  60714840 CAGttgtttgtttgtttgtttgctttgtctgagacgaagtttcgctcttgttgcccaggatggagtgcagtggcgcgatctcggttcactgcaacctcctcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccacacccagctaattttttgtatttttagtagagacagagtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctgggcctcccaaagtgctgggattacaggcatgagccactgcccctggccTTTTACATCtcgtttacccaaaagtcttaatatgcgcctaccatggtgtggccctggggatgtggaaggagcaaaaattgttccctgctctcttagagctttggttgatgcctggcagaca--------------------------------------------------------------ggctttatcaaataattacttcattaatcacaaatgtgtgaagtgccttactgtagacacgcagagcgtgcgggacacgttatcacaaagcaacctcctgtagtctagagtggggcgtgtgggtcagggaggtggaacgtgagagctgaaggctgaggagatgctgggctactaagaagtgaagagagccagacgccatggctcactcctgtaatcccagcactttgggtggcccaggcaaaaggatcacttgagcccagaagttggagaccagcctgagcaacacagtaagaccctgtctctacagaaaaatttaaaaattagc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102664953 748 - 106955855 AG-----ttgtttgtttgtttgttttgtccgagacgaaatttcgctcttgttgcccaggatggagtgcagtggtgcgatctcggttcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcgcaccaccacacccagctaattttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctggaacccctgacctcaggtgatccacccgcctgggcctctcaaagtgctgggattacaggcatgagccaccgcgcctggccTTTTACAGCTTGTTTACCCAAAAGTCttaatatgcgcctaccatggtgtggccctgggaatgtggaaggagcaaaaattgttccctgccctcttagagcttcggttgatgcct----gaca--------------------------------------------------------------ggctttatcaaataattacttcattaatcacaaatgtgtgacgtgccttactgtagacaggcagagcgtgcaggacacg-tatcacaaagcaac--cctgtagtctagagtggggcgtgtgggtcagggaggtggaacgtgagagctgaaggctgaggagatgctgggctactaagaagtgaggagagccagacgccatggctcactcctgtaatcccagccttttgggtggcccacgcaaaaggatcgcttgagcccaggagtttgagaccaacctgagcaacacagtgagaccccgtctctacagaaaaatttaaaaattagc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59949611 754 +  64156825 Ag----tttgtttgtttgtttgttttgtttgagtcgaagtttcactgttgttgcccagaatggagttcaatggcgcgatctcggttcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagccacccgagtagctgggattacaggcgcccgccaccacacccggctaattttttgtatttttagtagagacagggtttcaccatgttggccagactggtctcgaactcctcacctcaggtgatctgcccggctgcgcttcccaaagtgctggaattacaggcatgagccaccgtgcccggccTTTTACAGCTTGTTTACCTAAAAGTCttaatatgctcctaccatggtgtggccctggggatgtggcaggagcaaaaattgttccctgccctctaagagctttggttgatgcctggcagaca--------------------------------------------------------------ggctttatcaaataattacttcattaatcacaaatgtgtgaagtgccttactgtagacacgcagagcctgcgggacacg-tatcacaaagcaacctcctctagtctaaag-ggggcccgtgggtcagggaggtggaatgtgagcgctgaaagctgaagagatgctgggctgctaaggagtgaggagagccagacgcggggggtcactcctgtaatcccagcactttgggtggcccaggcgaaaggatcgcttgagcccaggagtttgagaccagcctgagcaacacagtgagaccccgtctctacagaaaaatttaaaaattagc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54953555 754 +  59248254 AG----tttgtttgtttgtttgttttgtttgagacgaagtttcactgttgttgcccagaatggagttcaatggcgcgatctcggttcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacacccggctaattttttgtatttttagtagagacagggtttcaccatgttggccagactggtctcgaactcctcacctcaggtgatctacccggctgggcttcccaaagtgctggaattacaggcatgagccaccgtgcccggccTTTTACAGCTTGTTTACCTAAAAGTCttaatatgctcctaccatggtgtggccctggggatgtggcaggagcaaaaattgttccctgccctctaagagctttggttgatgcctggcagaca--------------------------------------------------------------ggctttatcaaataattacttcattaatcacaaatgtgtgaagtgccttactgtagacacgcagagcctgcgggacacg-tatcacaaagcaacctcctctagtctaaag-ggggcccgtgggtcagggaggtggaatgtgagcgctgaaagctgaagagatgctgggctgctaaggagtgaggagagccagacgcggggggtcactcctgtaatcccagcactttgggtggcccaggcgaaaggatcgcttgagcccaggagtttgagaccagcctgagcaacacagtgagaccccgtctctacagaaaaatttaaaaattagc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46791008 816 +  50890351 AG----tttgtttgtttgtttgttttgtttgagacgaagtttcactgttgttgcccagaatggagttaaatggcgcgatctcggttcactgcaacctccgcctcccgggttcaagcgattttcctgcctcagcttcctgagtagctgggactacaggcgcccaccaccacacctggctaattttttgtatttttagtagagacggggtttcaccatgttggccagactggtctcgaacgcctcacctcaggtgatccacccggctgggcttcccaaagtgctggaatgacaggcatgagccaccgtgcccggccTTTTACAGCTTGTTTACCCAAAAGTcttaatatgggcctaccatagtgtggccctggggatgtggcaggagcaaagattgttccctgccctcttagagcttTGGTTGATGCCTGGCAGACAGGCTTTATCAAATAAtttttttttttttttttttttGACGGANNNNNNNNNNGCGCCCGGCCGGCTTTATCAAATAATTACTTCATTAATCACAAATGTGTGAAGTGCCTTACTGTAGACACGCAGAGCCTGCGGGACACG-TATCACAAAGCAACCTCCTCTAGTCTAAAG-GGGGCCCGTGGGTCAGGGAAGTGGAATGTGAGCGCTGAAAGCTGAAGAGATGCCGGGCTGCTAAGGAGTGAGGAGAgccagacgcggggggtcactcctgtaatcccagcactttgggtggcccaggcgaaaggatcgcttgagcccaggagtttgagaccagcctgagcaacacagtgagaccccatctctacagaaaaatttaaaaattagc
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3630114 232 + 145441459 I
e canFam3.chr1               19588306 1428 - 122678785 I
e calJac3.chr22              45363083 3219 +  49145316 I
e papAnu2.chr19              47083863 393 +  51301725 I

a score=512817.000000
s hg38.chr19_GL949751v2_alt     91444 239 +   1002683 cgggcgtgctggtgcgtgcctgtcatctcagctatcgggaggctgaggcgggagaatcgcttgagcccaggtgatcgaggctgccgtgagctatgatggcgccactgcactgcagcctaggtgacagagcaagacatggtctcaaaaaaaagaaaaga-----------------aaagaaaa-----aacaaagtgaaggaaag---------ggccactttagttacaagggactcc-tgtacaaagacctggaggcgggaagagaccg
s panTro4.chr19              59025007 244 +  63644993 cgggcgtgctggtgtgtgcctgccatctcagctatcgggaggctgaggcgggagaatcgcttgagcccaggtggtcgaggctgccgtgagctatgatggcgccactgcactgcagcctaggtgacagagcaagacatggtctcaaaaaaaagaaaaga-----------------aaagaaaagaaaaaacaaagtgaaggaaag---------ggtcactttagttacaagggactcc-tgtacaaagacctggaggtgggaagagaccg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55902141 231 +  60714840 caggcgtgctggtgtgtgcctgtcatctcagctatcgggaggctgaggcgggagaatctcttgagcccaggtggtcgaggctgcagtgagctatgatggcaccactgcactgcagcctaggtgacagagcaagacattgtctcaaaaa---------a-----------------aaagaaaa-----aacaaagtgaaggaaag---------agccactttagttacaagagagtccttgtacaaagacctggaggtgggaagagactg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102665701 237 - 106955855 cgggcgtgctggtgtgtgcctgtcatctcagctatcgcgaggctgaggtgggagaatcgcttgagcccaggtggtcgaggctgccgtgagctatgatggcaccactgcactgcagcctaggtgacaaagcaagacattgtctcaaaaaaaagaa---a-----------------aaagaaaa-----aacaaagtgaaggaaag---------agccactttagttacaaaggactccttatacaaagacctggaggtgggaagaaattg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59950365 248 +  64156825 cgggtgtactg--gtgtgcctgtcatctcagctatcgggaggctgaggtgggagaaccgcttgagcccaggtggtcgaggctgcagggagctatgatggcgccacagcactgcagcctaggtaacagagcaagacattgtctcaaaaaaaaaaaaaaaaaaag------------aaagaaaagaaaaaacaaagcgaaggaaag---------agccaccgtagttacaagggactccttgtacaaagatctggaggtgggaagaaattg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54954309 246 +  59248254 cgggtgtactggtgtgtgcctgtcatctcagctatcgggaggctgaggtgggagaaccgcttgagcccaggtggtcgaggctgcagggagctatgatggcgccacagcactgcagcctaggtaacagagcaagacattgtctcaaaaaaaaaaaaaaga----------------aaagaaaagaaaaaacaaagcgaaggaaag---------agccaccgtagttacaagggactccttgtacaaagatctggaggtgggaagaaattg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47084256 271 +  51301725 CGGGTGTGTTGGTGTgggcctgtcatctcagctatcgggaggctgaggcgggagaaccgcttgagcccaggtggtcgaggctgcagtgagctatgatggcgccacagcactgcagcctaggtaacagagcaagacattgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaagaaaagaaaaaacaaagcgaaggaaaaaaCGACCTTAGTGACCTTAGTTACAAGGGACTCCTTGTACAAAGATCTGGAGGTGGGAAAAAATTG
i papAnu2.chr19             I 393 C 0
s chlSab2.chr6               46791824 229 +  50890351 cgggtgtgctggtgtgtgcctgtcatctcagctatcgggaggctgaggcgggagaaccgcttgaccccaggtggtcgaggctgcagtgagctatgatggcgccacagcactgcagcctaggtaacagagcatgacattgtctccaaaaaaaaaaaaa------------------aaagta---------------gaaggaaag---------aGCCACCGTAGTTACAAGGGACTCCTTGTACAAAGATCTGGAGGTGGGAAGAAATTG
i chlSab2.chr6              C 0 I 313
e mm10.chr7                   3630114 232 + 145441459 I
e canFam3.chr1               19588306 1428 - 122678785 I
e calJac3.chr22              45363083 3219 +  49145316 I

a score=1782035.000000
s hg38.chr19_GL949751v2_alt     91683 769 +   1002683 ATAAtgtaaccaactcaagtttctgctactcagaggc------agaggaagtggggggtggtgaaagtaaagcagctttactgatcaaatgctcgcagatgagaaatggccaagctaatgtctttagaagaccatttcaagctttaggctggggagaggggcttaaaaaggggaactttgaatgggaggcatacaggagtggtgctgggtacaaggtatgtgtgtcttgctccgaaggctgtcttgagtcacgggccacctggagcatgggctggtgtcaagtcaacaatggccacgttgtagattgatcgccttgaggtgatctctggagttttgcagctgggtttccatacctagtttgtttcaagattagcccctgcggcgaggcgcggtggcttacgcctgtaatcccaacagtttgggaggccaaggtgggtcgctcacttgaggtcaagagttcaagaccagcctggcttacatagtgaaaccttgactctac----aaaaaaaaaaaa---------------aaaaaattagctgggcatggtggcaggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcaagtgagccaagactgcgccactgcactccaacctgggtgtcagagccagactccatctttaaaa-aataaataaataaagattagcccctggaacttctaagtaagcacatagataagccagcagtgcaagacagtatctagtgggaaaggagggaaacaaagaattt
s panTro4.chr19              59025251 768 +  63644993 ATAAtgtaaccaactcaagtttctgctactcagaggc------agaagaagtggggggtggtgaaagtaaagcagctttactgatcaaatgctcgcagatgagaaatggccaagctaatgtctttagaagaccatttcaagctttaagctggggagaggggcttaaaaaggggcactttgaatgggaggcatacaggagtggtgctgggtacaaggtatgtgtgtcttgctccgaaggctgtcttgagtcacgggccacccggagcatgggctggtgtcatgtcaacaatggccaggttgtagattgatcgccttgaggtaatctctggagttttgcagctgggtttccatacctagtttgtttcaagattagcccctgcggcgaggcgcggtggcttacgcctgtaatcccaacagtttgggaggccaaggtgggtcactcacttgaggtcaagagttcaagaccagcctggcttacatagtgaaaccttgactctac----aaaaaaaaaaaa---------------aaaaa-ttagctgggcatggcggcaggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgtttgaacccaggaggtggaggttgcaagtgagccaagactccaccactgcactccaacctgggtgtcagagccagactccatctttaaaa-aataaataaataaagattagcccctggaacttctaagtaagcacatagataagccagcagtgcaagacagtgtctagtgggaaaggagggaaacaaagaattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55902372 766 +  60714840 ATAAtgtaaccaactc--gtttctgctattcagaggc------agaagaagttgggggtggtgaaagtaaagcagctttattgatcaaatgctcgcagatgagaaatggccaagctgatgtctttcaaagaccatttcaaactttaggctggggagaggggcttaaaaaggggaattttgaatgggaggcatacaggagtggtgctgggtacaaggtatgtgtgtcttgctccaaaggctgtcttgagtcacgggccacccagagcatgggctggtgtcatgtcaacaatggccaggttgtagattgatcgtcttgaagtaacctctggagttttgcagctgtgtttccatacctagtttgtttcaagattagcccctgcggcgaggcgcggtggctcacgcctgtaatcccaacggtttgggaggccaaggtgggtcgctcacttgaggtcaagagttcaagaccagcctggcttacatggtgaaaccttgattctac----aaaaaaaaaaaa----------aatgcaaaaaattagctgggcatggtggcaggtgcctgtagtcccagctactcaggaggctgaggcaggagaattgctcgaacccaggaggtggaggttgc-agtgagccaagactgtgccactacactccaacctgggtgtcagagccagactccatctttaaaa-aacaaat-----aagattagcccctggaacttctaagtaagcacatagataagccagcagtgcaagacagtgtctagtgggaaaggagggaaacaaagaattt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102665938 784 - 106955855 ATAAtgtaaccaactcaagtttctgctactcagaggc------agaagaagtgggaggtggtgaaagtaaagaagctttattgatcaaatgctcgcagttgagaaatggccaagctaatgtctttaaaagaccatttcaaactttaggctggggagaggggcttaaaaaagggaactttgaatgggaggcctacaggagtggtgctgggtatgaggtatgtgtctcttgctccgaaggctgtcttgagccatgggccacctggagcatgggctggtgtcatgtcaacaatggccaggttgtagattgatcgccttgaggtaatctctggagttttgcagctgggtttccatacctagtttgtttcaagattagcccccgcggcgaggcgctgtggttcatgcctgtaatcccaacagtttgggaggccaaggtgggtcgctcacttgaggtcaagagttcaagaccagcctggcttacatggtgaaaccttgactctac----aaaaaaaaaaaaaaaaaaaagaaatgcaaaaaattagctgggcatggtggcaggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcaagtgagccaagactgtgccactgcactccaacctgggtgtcagagccagactcaatctttaaaa-aataaataaataaagattagcccctggaacttctaagtaagcacatagagaagccagcagcgcaagacagtgtctagtgggaaaggagggaaacaaagaattt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59950613 762 +  64156825 ATAAtgtaaccaactcaagtttctgctactcagaggctagaataggagaagtgaggggtggtgaaagtaa---agctttattaatcaaatggtcgcagatgagaaatggccaagctaatgtctttaaaagaccgtttcaaactgtaggctggggagaggggcttaaaaaggggaactctgaatcggaggcatacaggaatggtgctgggtacagggtatgtgtgtctttctctgaaggctgtcttgagtcatgggccacctggagcatgggctggaatcatgtcaataatggccaggttttagattgatcgccttgaggtaatctctggagttttgcagctgggtttccatacgtagtttgtttcgtgattagcccctgcggccaggcgcggtggctcacgcctgtaatcccaatggtttgggaggccaaggtgggtccctcacttgaggtcaagagttcaagaccagcctggcttacatggtgaaactttgactctac----------aaaaaa---------------aaaaaaatagctgggcgtggtggcaggtgcctgtaatcccagctacccaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgt-agtgagccaagattgtgccactgtgctccaacttgggtgacagagccagactccatctttaaaa----aaataaataaagattagcccctggaacttctaagtaagcacatggataagccatcactgcaagacagtgtctagtgggaaaggcaggaaacaaagaattt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54954555 762 +  59248254 ATAAtgtaaccaactcaagtttctgctactcagaggctagaataggagaagtgaggggtggtgaaagtaa---agctttattaatcaaatggtcgcaaatgagaaatggccaagctaatgtctttaaaagaccgtttcaaactgtaggctggggagaggggcttaaaaaggggaactctgaatcggaggcatacaggaatggtgctgggtacagggtatgtgtgtctttctctgaaggctgtcttgagtcatgggccacctggagcatgggctggaatcatgtcaataatggccaggttttagattgatcgccttgaggtaatctctggagttttgcagctgggtttccatacgtagtttgtttcgtgattagcccctgcggccaggcgcggtggctcacgcctgtaatcccaatggtttgggaggccaaggtgggtccctcacttgaggtcaagagttcaagaccagcctggcttacatggtgaaactttgactctac----------aaaaaa---------------aaaaaaatagctgggcgtggtggcaggtgcctgtaatcccagctacccaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgt-agtgagccaagattgtgccactgtgctccaacttgggtgacagagccagactccatctttaaaa----aaataaataaagattagcccctggaacttctaagtaagcacatggataagccatcactgcaagacagtgtctagtgggaaaggcgggaaacaaagaattt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47084527 760 +  51301725 ATAATGTAACCAACTCAAGTTTCTGCTACTCAGAGGCTAGAATAGGAGAAGTGAGGGATGGTGAAAGTAA---AGCTTTATTGATCAAATGGTCACAGATGAGAAATGGCCAAGCTAATGTATTTAAAAGACCGTTTCAAACTGTAGGCCGGGGAGAGGGGCTTAAAAGGGGGAACTCTGAATCGGAGGCATACAGGAATGGTGCTGGGTACAGGGTATGTGTGTCTTTCTCTGAAGGCTGTCTTGAGACA---GCCACCTGGAGCATGGGCTGGAATCATGTCAGTAATGACCAGGTTTTAGATTGATCACCTTGAGGTAATCTCTGGAGTTTTGCAGCTGGGTTTCCATACCTAGTTTGTTTCGAGATTAGCCCctgcggccaggcgcagtggctcacgcctgtaatcccaatggtttgggaggccaaggtgggtccctcacttgaggtcaagagttcaagaccagcctggcttacatggtgaaactttgactttac---------aaaaaaa---------------aaaaaaatagctgggcgtagtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgt-attgagccaagattgtgccactgtgctccaacttgggtgacagagccagactccatctttaaaa----aaataaacaaagattagCCCCTGGAACTTCTAAGTAAGCACATGGATAAGCCATCAGTGCAAGACAGTGTCTAGTGGGAAAGGCGGGAAACAAAGAATTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46792366 776 +  50890351 ATAAtgtaaccaactcaagtttctgctactcagaggctagaataggagaagtgaggggtggtgaaagtaa---agctttattgatcaaatggtcgcagatgagaaatggccaagctaatgtctttaaaagaccatttcaaactgtaggctggggagaggggcttaaaaaggggaactttgaatcggaggcatacaggaatggtgctgggtacagggtatgtgtgtcttgctctgaaggctgtcttgagtcatgggccacctggagcatgggctggaatcatgtcaataatagccaggttttagattgatcgccttgaggtaatctctggagttttgcagctgggtttccatacccagtttgtttcgagattagcccctgcggccaggcgcggtagctcacgcctgtaatcccaatggtttgggaggccaaggtgggtccctcacttgaggtcaggagttcaagaccaccctggcttacatggtgaaactttgactctacaaaaaaaaaaaaaaaa---------------aaaaaaatagctgggtgtggtggcaggtgcctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgt-agtgagccaagattgtgccactgtgctccaacttgggtgacagagccagactccatctttaaaaaaataaataaataaagattagcccctggaacttctaagtaagcacatggataagccatcactgcaagacagtgtctagtgggaaaggcgggaaacaaagaattt
i chlSab2.chr6              I 313 C 0
e mm10.chr7                   3630114 232 + 145441459 I
e canFam3.chr1               19588306 1428 - 122678785 I
e calJac3.chr22              45363083 3219 +  49145316 I

a score=279425.000000
s hg38.chr19_GL949751v2_alt     92452 95 +   1002683 caaagtatgttttcaaggctaaaggcaagaaagg--aataagaaagtttgcaaatgcatttggaatctacaccacttggttccaGTAAGTCTTAGCA
s panTro4.chr19              59026019 95 +  63644993 caaagtatgttttcaaggctaaaggcaagaaagg--aataagaaagtttgcaaatgcatttggaatctacaccacttggttccaGTAAGTCTTAGCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55903138 94 +  60714840 caaagtatgttttcaaggctaaaggaaagaaagg---ataagaaagtttgcaaatgcatttggaatctacaccacttggttccaGTAAGTCTTAGCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102666722 95 - 106955855 ctaagtgtgttttgaaggctaaaggaaagaaagg--aataagaaagtttgcaaatgcatttggaatctatgccacttggttccaGTAAGTCTTAGCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59951375 95 +  64156825 cagagtatgttttcaaggctaaaggcaagaaagg--aaaaaaaaagtttgcaaatgcatttggaatctacaccacttggttCCGGTAAGTCTTAGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54955317 95 +  59248254 cagagtatgttttcaaggctaaaggcaagaaagg--aaaaaaaaagtttgcaaatgcatttggaatctacaccacttggttCCGGTAAGTCTTAGCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47085287 95 +  51301725 CAGAGTATGTTTTCAAGGCtaaaggcaagaaagg--aaaaaaaaagtttgcaaatgCATTTGGAATCTACACCACTTGGTTCCGGTAAGTCTTAGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46793142 95 +  50890351 caaagtatgttttcaaggctaaaggcaagaaagg--aaataaaaagtttgcaaatgcatttggaatctacaccacttggttCCGGTAAGTCTTAGCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45366302 97 +  49145316 caaagtatgttttcaaggctaaaagcaagaaaggaaaaaaaaaaagtttcaaaatgcatttggaatctaagccacttgatgacaGGAAGTCTTAGCA
i calJac3.chr22             I 3219 C 0
e mm10.chr7                   3630114 232 + 145441459 I
e canFam3.chr1               19588306 1428 - 122678785 I

a score=144139.000000
s hg38.chr19_GL949751v2_alt     92547 54 +   1002683 AGGTGGCGGTCATAGGGgtgtgctgcgtcttgcacaggtcggagctggagac-tc
s panTro4.chr19              59026114 54 +  63644993 AGGTGGCGGTCATAGGGgtgtgctgcgtcttgcacaggtcggagctggagac-tc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55903232 54 +  60714840 AGGTGGCGGTCATAGGGgtgtgctgcgtcttgcacatgtcagagctggagac-tc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102666817 54 - 106955855 AGGTGGTGGTCATAGGGgtgtgctgtgtcttgcacaggtcggagctggagac-tc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59951470 54 +  64156825 AGGTGGCGGTCGTAGGGGTGTGCtgtgtcttacacaggtcggagctggagac-tc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54955412 54 +  59248254 AGGTGGCGGTCGTAGGGGTGTGCtgtgtcttacacaggtcggagctggagac-tc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47085382 54 +  51301725 AGGTGGCGGTCGTAGGGGTGTGCTGTGTCTTGCACAGGTCGGAGCTGGAGAC-TC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46793237 54 +  50890351 AGGTGGCGGTCGTAGGGgtgtgctgtgtcttacacaggtcacagctggagac-tc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45366399 20 +  49145316 GGGTGGAGGTCGCAGGGATA-----------------------------------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3630346 55 + 145441459 AGGTGGTACCTGGAGGGATGTGCTGTGTTCTGTGTGGGTAGGAACAGGAGACAAC
i mm10.chr7                 I 232 C 0
e canFam3.chr1               19588306 1428 - 122678785 I

a score=68613.000000
s hg38.chr19_GL949751v2_alt     92601 23 +   1002683 gccagtgaacaaaacaaactaaa
s panTro4.chr19              59026168 23 +  63644993 gccagtgaacaaaagaaactaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55903286 23 +  60714840 gccagtgaacaaaacaaactaaa
i ponAbe2.chr19             C 0 I 724
s nomLeu3.chr10             102666871 23 - 106955855 gccagtgaacaaaacaaactaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59951524 23 +  64156825 gccagtgaacaaaacaaactaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54955466 23 +  59248254 gccagtgaacaaaacaaactaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47085436 23 +  51301725 gccagtgaacaaaacaaactaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46793291 23 +  50890351 gccagtgaacaaaacaaactaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45366419  4 +  49145316 -------------------TAAA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3630401 20 + 145441459 CTCCGTGAACTAAGCAAGCT---
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19589734 23 - 122678785 gccaaagaacaaagcaaaagaaa
i canFam3.chr1              I 1428 C 0

a score=946469.000000
s hg38.chr19_GL949751v2_alt     92624 247 +   1002683 gcacctgttgtcgtggagcctgcat---gctagtggggttgataaa-GAAGGACC---AGGGTCTTCTGGGGGAGAATCATCGCTCAGTAATAAGGAGGGACTTTGTCGGGGCAAGTTTTTAGGGAACGCTGCTGTCCCTCCC---CAGGCCTCGGGATGTCTCTGGCAGATGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaagaagaggagccagcgatcgagg
s panTro4.chr19              59026191 247 +  63644993 gcacctgtcgtcgtggagcctgcat---gctagtggggttgataaa-GAAGGACC---AGGGTCTTCTGGGAGAGAATCATCGCTCAGTAATAAGGAGGGAGTTTGTCGGGGCAAGTTTTTAGGGAACCCTGCTGTCCCTCCC---CAGGCCTCGGGATGTCTCTGGCAGATGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaagaagaggagccagcgatcgagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55904033 247 +  60714840 gcacctgtcgtcatggagcctgcat---gctagtggggttgagaaa-gaAGGACC---AGGGTCTTCTGGGGGAGAATCATCGCTCAGTAATAAGGAGGGACTTTATTGGGGCAAGTTTTTAGGGAACCCTGCTGTCCCTCCC---CAGGCCTCGGGATGTCTCTGGCAGATGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaggaagaggagccagcgatcgagg
i ponAbe2.chr19             I 724 C 0
s nomLeu3.chr10             102666894 247 - 106955855 gcacctgtcgtcgtggagcctgtgt---gcgggtggggttgataaa-GAAGGACC---AGGGTCTTCCGGGGGAGAATCATCGCTCAGTAATAAAGAGGGACTTTGTCGGGGCAAGTTTTTAGAGAACCCTGCTCTCCCTCCC---CAGGCCTCGGGATGTCTCTGGCAGATGAGCTCTTAGCTGATCTCGAAGAGGCAGCAGAAGAGGAGGAAGGAGGAAGCTATGGGGAGGAAGAAGAGGAGCCAGCGATCGAGG
i nomLeu3.chr10             C 0 M 1722
s rheMac3.chr19              59951547 248 +  64156825 gcacctgtcgtcgtggagcctgcac---gctactggggTTCATAAA-GAAGGACC---AGGGTTTTCTGGGGGAGAATCATCAC-CAGTAATAAGGAGGGACTTTGTCAGGGCAAGTTTTTAGGGAACCCTGCTCTCCCTCCC-CACAGGCCTCGGGATGTCTCTGGCAGACGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaagaggaggagCCAGCCATCGAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54955489 248 +  59248254 gcacctgtcgtcgtggagcctgcac---gctactggggTTCATAAA-GAAGGACC---AGGGTTTTCTGGGGGAGAATCATCGC-CAGTAATAAGGAGGGACTTGGTCAGGGCAAGTTTTTAGGGAACCCTGCTCTCCCTCCC-CACAGGCCTCGGGATGTCCCTGGCAGACGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaagaggaggagccagccatcgagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47085459 248 +  51301725 gcaCCTGTCGTCGTGGAGCCTGCAC---GCTACTGGGGTTCATAAA-GAAGGACC---AGGGTTTTCTGGGGGAGAATCATCGC-CAGTAATAAGGAGGGACTTTGTCGGGGCAAGTTTTTAGGGAaccctgctctccctccc-cacaggcCTCAGGATGTCTCTGGCAGATGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaagaggaggagccagccatcgagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46793314 248 +  50890351 gcacctgtcgtcgtggagcctgcac---gctactggggTTCATAAA-GAAGGACC---AGGGTTTTCTGGGGGAGAATCATCGC-CAGTAATAAGGAGGGACTTTGTCGGGGCAAGTTGTTAGGGAACCCTGCTCTCCCTCCC-CACAGGCCTCGGGATGTCTCTGGCAGATGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaagaggaggagccagccatcgagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45366423 245 +  49145316 GCCGCTGTCAGTGTGGAGCCTGTGT---GCTGGTGGGATTGGGAAA-GAAGG-CC---AGGGCCTTCTGGGGGAGAAT--TTCCTCAGTGATAAGGAGGGACTT-GTTGGGGCAAGTGTTTAGGGAACCCTACTCTCCCTCTC-CACAGGCCTCGGGATGTCTCTAGCAGATGAGCTCTTAGCTGATCTCgaagaggcagcagaagaggaggaaggaggaagctatggggaggaggaagaggagccagcgatcgagg
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3630421 244 + 145441459 ------------GTGGAGCCTGCGTGCGGCTACAGGAGCTGATGAA-GAAGAAACTTAAGGGGATCCGGGAGAAGGTGCTCCTTCTGGTGATATGAGTGGACAGGGTCAAGATGCAGTATTAGGGAACCCCATTCTCCCTTTCCCATAGGCCTTGGGATGTCTCTGGCTGATGAGCTCTTGGCTGACCTCGAGGAGGCAGCAGAAGAAGAGGAAGGAGGAAGCTATGGAGAAGAGGAGGAGGAGCCAGCAATTGAGG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19589757 212 - 122678785 atacccgtgcttatggagcctgcat---gcttgtggggCTGACCCGTGAAGGACC---AGGCC------------AAGCCCCTCTCGTTAATGAG--------------------------AGGGGATGCTGCTTTCCCTTCC-CATAGGCCTCGGCATGTCTCTGGCAGATGAGCTTCTGGCCGACCTTgaggaggcggcagaggaggaagaaggaggaagctatggggaggaagaagaggagccagcaatcgagg
i canFam3.chr1              C 0 C 0

a score=1265126.000000
s hg38.chr19_GL949751v2_alt     92871 429 +   1002683 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCAGTCAAGACCATCGCCAAGCTATGGGATAGTAAGATGGTAAGAGGACAAGAGGTGTTCCTAG-CAGGGGGCTCTAGACAGAATCTCCCAGAAGGGGGTGATACAGG--------CTTCTTTTTGAAGAGTGCTGGATTCTGACTGTCTTCTCCTTTCCTA-CAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTCTGTGCCCCTCCCCATCTCCTGTCTCTCCTGCCAGGCCCCCTGGCTCCCTGGCTGCTTGTGGC---------TGGGT------ATATCTCCTT-CTCAGCCTTTTCCAGAGCCTTCTTTTTT-------TTTT--GTTTCACCCCAACCCGTTCCCTTTTCCACTAAATATATATTGCATTGTA
s panTro4.chr19              59026438 430 +  63644993 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCAGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGTGTTCCTAG-CAGGGGGCTCTAGACAGAATCTCCCAGAAGCGGGTGATACAGG--------CTTCTTTTTGAAGAGTGCTGGATTCTGACTGTCCTCTCCTTTCCTA-CAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTCTGTGCCCCTCCCCATCTCCTGTCTCTCCTGCCGGGCCCCCTGGCTCCCTGGCTGCTTGTGGC---------TGGGT------ATATCTCCCT--TCAGCCTTTACCAGAGCCTTCTTTTTT-------TTTTTTGTTTCACCCCAACCCGTTCCCTTTTCCACTAAATATATATTGCATTGTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55904280 430 +  60714840 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCGGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGCATTCCTAG-CAGGGGGCTTTAGACAGAATCTCCCAGAAGGGGGTGATACAGG--------CTTCTTTTTGAAGAGTGCTGGATTCTGACTCTCCTCTCCTTTTCTG-CAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTGTGTACCCCTCCCCATCTCCTGTCTCTCCTGCCAGGCCCCCTGGCTCCCTGGCTGCTTGTGGC---------TGGGT------ATATCTCCCT-CTCAGCCTTTTCTAGAGCCTTCTTTTTT-------TTGT-TGTTTCTCCCCAACCCGTTCCCTTTTCCACTAAATATATATTGCATTGTA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59951795 438 +  64156825 ATGTGCAGGAGGAGACACAGCTGGATCTTTCCGGGGATTCGGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGCGTTCCTAGCCAGGGGGCTCTAGACAGAATCTCCCAGAAGGGGGTGACACAGG--------CTTCTTTTGGAAGAGTCCTGGATTCTGACTCTCCCCTCCTTTCCTG-CAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTCTGTGCCCTTCCCTATCTGCTATGTCTCCTGCCAGGCCCCTAGGCTCCCTGGCTGCTTGCGGC---------TGGGT------GTATCTCCCC-CGCAGCCTTTTCCAGAGCCTTCTTTCTT-GTTTGTTTGTTTGTTTCTCCCCAACCCCTTCCCTTTTCCACTAAACATATACTGCATTGCG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54955737 438 +  59248254 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCGGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGCGTTCCTAGCCAGGGGGCTCTAGACAGAATCTCCCAGAAGGGGGTGACACAGG--------CTTCTTTTGGAAGAGTCCTGGATTCTGACTCTCCCCTCCTTTCCTG-CAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTCTGTGCCCTTCCCTATCTGCTGTGTCTCCTGCCAGGCCCCTAGGCTCCCTGGCTGCTTGCGGC---------TGGGT------GTATCTCCCC-CGCAGCCTTTTCCAGAGCCTTCTTTCTT-GTTTGTTTGTTTGTTTCTCCCCAACCCCTTCCCTTTTCCACTAAACATATACTGCATTGCG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47085707 436 +  51301725 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCGGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGCGTTCCTAGCCAGGGGGCTCTAGACAGAATCTCCCAGAAGGGGGTGACACA-G--------CTTCTTTTGGAAGAGTCCTGGATTCtgactctcctctcctttcctg-caGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTCTCTGCCCTTCCCCATCTCCTATGTCTCCTGCCAGGCCCCTAGGCTCCCTGGCTGCTTGTGGC---------TGGGT------ATATCTCCCC-CTCAGCCTTTTCCagagccttctttttt--tttttttttttgtttctccccAACCCTTTCCCTTTTCCACTAAACATATACTGCATTGCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46793562 438 +  50890351 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCGGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGCGTTCCTAG-CAGGGGGCTCTAGACAGAATCTCCCAGAAGGGGGTGACACAGG--------CTTCTTTTGGAAGAGTCCTGGATTCTGACTCTCCTCCCCTTTCCTG-CAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGGTGCTTCCTCCCACTCTCTGCCCTTCCCCATCTCCTATGTCTCCTGCCAGGCCCCTAGACTCCCTGGCTGCTTGTGGC---------TGGGT------ATATCTCCCC-TGCAGCCTTTTCCAGAGCCttctttttttttttttttttttgtttCTCCCCAACCCCTTCCCTTTTCCACTAAACATATACTGCATTGCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45366668 426 +  49145316 atgtgcaggaggagACACAGCTGGATCTTTCCGGGGATTCGGTCAAGACCATCGCCAAGCTATGGGACAGTAAGATGGTAAGAGGACAAGAGGCATGGATAG-CAGGGGGCTCTAAAC--AATCTCCCAGAAAGAGGCGATACAGG--------CTTCTTTTTGAAGAGTCCTGGATTCCGACTCTC--CTCCTTCCCTG-CAGTTTGCTGAGATCATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCCGAAGGTACTTCCTCCCCCTTCGTGCCCCTCCCCATCTCCTGACTCTTCTGCCAGGCCCCTTGGCTCCTTTGCTGCTTGTGGC---------TGGGT------ATATCTCCCT-CTCAGAGTTTTCCAGAGCCTTCTCTTTT--------TTTTTATTCCTCCCCAACCCATTCCCTTTTCCAGTAAACATAAATTGCTTCGTA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3630665 405 + 145441459 ATGTACAGGAGGAGACCCAGCTGGATCTTTCTGGAGATTCAGTCAAGAGCATTGCCAAGCTATGGGACAGCAAGATGGTGAGGTGGCA-----CCCTTTAAG-TCAGCGTTCCTAGGGAGGAGTGGCCGGAGAGCAG------------------TTCTTTCTG-AGAGGCCTAGTTTCTGACTGTGCTCTCCTTCCTCATCAGTTTGCTGAGATCATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAACGTGTCGGAAGGTGCCTCCCACCCTCACTTTCCTCTGCCCAT---------------TCTGACTCCCCGACTCTCTTGCTCCTTATGGT---------TTTATCACCAAGTGTCTCCCTCCTCAGCTTTCCTCAGAGCATTCATTCTT-------CTTTTTTTTTTT---AAATCCAGTTACTGACCCTCTGAAAACATACTGCATTGTA
i mm10.chr7                 C 0 I 1141
s canFam3.chr1               19589969 417 - 122678785 atgtgcaggaggagACGCAGCTGGATCTTTCTGGGGATTCAGTCAAGAGTATCGCCAAGCTGTGGGACAGCAAGATGGT------------------------GAGTGGGCTGTAGAGAGAAGCTGCCGGGAGG-GCTGATGTGTGCAGTTGCTCTTCTTTCTG-AGAGTCCTGAGTTCTGTCTCTCTGTCCTCCCTGAA-CAGTTTGCTGAGATCATGATGAAGATTGAGGAGTATATCAGCAAGCAGGCCAAGGCCTCGGAAGGTACCTCTCCCCTCCTGCTCCCTCTCACCCACCCAGCTGTGTCCACCCAG-CCCCTGGGCTCCTTTGCTGCGTACAGCTTTGAAAGTTTGGT------CTGCCTGCCT-CTCAGCCTTTTTGAGAGCCCTCTTTTTC------------TTTTCCATCCCAACCCAGTCTCTTCTCCCCTGAGAACACATCACATCATA
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102667141 1722 - 106955855 M

a score=627517.000000
s hg38.chr19_GL949751v2_alt     93300 260 +   1002683 AAGCTCATGCTTCTTAAGTCCTTCCTGTG-----TGCTGAGC--TTACTGATCATGATAGGACTCAGCTTGAGgtttcccagacttcactgattcacatgaccggttacagggtttttgccacatctataagccgcttatcctattatttgcttaacatattctttgagtcta-ggactttttttcttaaattt-atctgagaaggaagcaaattgctaccatgaatggaaaactggtatcatttggcaaagacaaagtcactgtataa
s panTro4.chr19              59026868 257 +  63644993 AAGCTCATGCTTCTTAAGTCCTTCCTGTT-----TGCTGAGC--TTACTGATCATGATAGGACTCAGCTTGAGgtttcccagacttcactgattgacatgaccggttacagggtttttgccacatctgtaagccgcttatcctatt---tgcttaacatattctttgagtcta-ggactttttttcttaaattt-atctgagaaggaagcaaattgctaccatgaatggaaaactggtatcatttggcaaagacaaagtcactgtataa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55904710 260 +  60714840 AAGCTCATGCTTCTTAAGTCCTTCCTGTG-----TGCTGAGC--TTACTGATCATGATAGGACGCAGCTTGAGgtttcccagacttcactgattcacatgaccggttacagggttttcgccacatctataagccacttatcctattatttgcttaacatattctttgagtcta-ggactttttttcttaaattt-atccgagaaggaagcaaattgctaccatgaatggaaaactggtatcatttggcaaagacaaagtcactgtataa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59952233 256 +  64156825 AAGCTCATGCTTCTTACGTCCTTTCTGTG-----TGCTGAGC-----CTGGTCATGTTGGGACTTAGCTTGAGGGttcccagacttcactgatgcacatgaccagttacagggtttttgccacatctataagccacttgtcctattatttgcttaacatattctttgagtctg-ggactttttctcttaaattt-atctaagaaggaagcaaattgctaccatgaatggaaaactggtatcattt-gcaaagacaaagtcaccgtataa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54956175 256 +  59248254 AAGCTCATGCTTCTTACGTCCTTTCTGTG-----TGCTGAGC-----CTGGTCATGCTGGGACTTAGCTTGAGGGttcccagacttcactgattcacatgaccagttacagggtttttgccacatctataagccacttgtcctattatttgcttaacatattctttgagtctg-ggactttttctcttaaattt-atctaagaaggaagcaaattgctaccatgaatggaaaactggtatcattt-gcaaagacaaagtcaccgtataa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47086143 256 +  51301725 AAGCTCATGCTTCTTACGTCCTTTCTGTA-----TGCTGAGC-----CTGGTCATGCTGGGACTTAGCTTGAGGGTTCCCAGACTTCACTGATTCACATGACCGGTTACAGGGTTTTTGCCACATCTATAAGCCACTTGTCCTATTATTTGCTTAACATATTCTTTGAGTCTG-Ggactttttctcttaaattt-atcTAAGAAGGAAGCAAATTGCTACCATGAATGGAAAACTGGTATCATTT-GCAAAGACAAAGTCACcgtataa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46794000 261 +  50890351 AAGCTCATGCTTCTTACATCCTTCTTACGTCCCATGCTGAGC-----CTGGTCATACTGGGACTTAGCTTGAGGGttcccagacttcactgattcacatgaccagttacagggtttttgccacatctataagccacttgtcctattatttgcttaacatattctttgagtctg-ggactttttctcttaaattt-atctaagaaggaaggaaattgctaccatgaatggaaaactggtatcattt-gcaaagacaaagtcaccgtataa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45367094 257 +  49145316 CAGCGCAT-CTTCTTAAGTCCTCACTGTG-----TCCTGAGT--TTGCTAATCACGATGGGACTTAGCTTGAGTtttcccagactcc-cagattcacatgaccagttacagggttttggccacatctagaagccacttgtcct-ttaattgcttaacatattctttgagtcta-ggtcttttt-tcttaaatttgatctacaaaggaagcaaactgctgccatgaatgggaaactggcatcacttggtaaagacgaagtcaccatgtga
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19590386 252 - 122678785 AAGCTGATGTTCCTTAAGTCCTTGCTCCG-----TGCTGAGCACTTACTAACTGCAGTAGGACTTGCCTCAAGATTCCTCCGGCTTC--------ATGTGACTGCTT--GAGGGtcttgccacatctgtgaa-cacttgttttgttttttacttaatttttttttcaaatcagtgtactcttttctttgaattt-acctaaaaaggaaagttattgctactgcgagtagaaaactggtatcacttggtaagtagagagtaattctaaaa
i canFam3.chr1              C 0 I 87
e mm10.chr7                   3631070 1141 + 145441459 I
e nomLeu3.chr10             102667141 1722 - 106955855 M

a score=35082.000000
s hg38.chr19_GL949751v2_alt     93560 19 +   1002683 aaatagatataTAATTATT
s panTro4.chr19              59027125 19 +  63644993 aaatagatataTAATTATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55904970 19 +  60714840 aaatagatataTAATTATT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59952489 19 +  64156825 aaatagacataTAATTATT
i rheMac3.chr19             C 0 I 8
s macFas5.chr19              54956431 19 +  59248254 aaatagatataTAATTATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47086399 13 +  51301725 aaatagatatatt------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46794261 19 +  50890351 aaatagatataTAATTATT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45367351 19 +  49145316 aaataaatacGTGATTATT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19590638 87 - 122678785 I
e nomLeu3.chr10             102667141 1722 - 106955855 M

a score=4103.000000
s hg38.chr19_GL949751v2_alt     93579 8 +   1002683 TAGGAACC
s panTro4.chr19              59027144 8 +  63644993 AAAGAACC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55904989 8 +  60714840 AAAGAACC
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               46794280 8 +  50890351 AAAGAATC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45367370 8 +  49145316 AGAGCATC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19590638 87 - 122678785 I
e nomLeu3.chr10             102667141 1722 - 106955855 M
e papAnu2.chr19              47086412 0 +  51301725 C
e macFas5.chr19              54956450 0 +  59248254 C
e rheMac3.chr19              59952508 8 +  64156825 I

a score=76938.000000
s hg38.chr19_GL949751v2_alt     93587 295 +   1002683 ACCTAAggccgggcgccgtggctcacgcctgtaatcccagcactttgggaggcggaggcaggtggatcatgagttcaggagatcgagaccatcctggctaacacggtgacaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcggg-----tgcctgtagtcccagctactcaggaggctgaggcgggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaa
s panTro4.chr19              59027152 295 +  63644993 ACCTAAggctgggcgcagtagctcacccctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgacaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcggg-----tgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccaagatcgtgccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55904997 300 +  60714840 ACCTAAggccgggtgcagtagctcaggcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaagccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgccttgcctgtagtcccagctattcaggagggtgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccgagatcgtgccactgcactcctgcctgggagacagagcaagattccgtctcaaaaaaaa
i ponAbe2.chr19             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19590638  87 - 122678785 I
e calJac3.chr22              45367378   0 +  49145316 C
e nomLeu3.chr10             102667141 1722 - 106955855 M
e chlSab2.chr6               46794288   0 +  50890351 C
e papAnu2.chr19              47086412   0 +  51301725 C
e macFas5.chr19              54956450   0 +  59248254 C
e rheMac3.chr19              59952508   8 +  64156825 I

a score=2554.000000
s hg38.chr19_GL949751v2_alt     93882  8 +   1002683 aaaa----------aata
s panTro4.chr19              59027447  8 +  63644993 aaaa----------aata
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55905297 18 +  60714840 aaaaaaaaaaaaagaaTC
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54956450  8 +  59248254 AAAG----------AATC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47086412  8 +  51301725 aaag----------AATC
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19590638 87 - 122678785 I
e calJac3.chr22              45367378  0 +  49145316 C
e nomLeu3.chr10             102667141 1722 - 106955855 M
e chlSab2.chr6               46794288  0 +  50890351 C
e rheMac3.chr19              59952508  8 +  64156825 I

a score=333780.000000
s hg38.chr19_GL949751v2_alt     93890 152 +   1002683 aCCTAAAACCTTTTCTCATGCCCAAATTGAGAGAACACTAGCTTATCTCATGAGTGCTCAGACTCACTCTTAAGAGGGCAGTCCTGTTACCATTCCTAttct-ttttttt------ttttccttgagatagagtctccctctgtcgcccaggctggagt
s panTro4.chr19              59027455 152 +  63644993 aCCTAAAACCTTTTCTCATGCCCAAATTGAGAGAACACTAGCTTATCTCATGAGTGCTCACACTCACTCTTAAGAGGGCAGTCCTGTTACCATTCCTAttct-ttttttt------ttttccttgagatggagtctccctctgtcacccaggctggagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55905315 153 +  60714840 ACCTAAAACCTTTTCTCATGCCCAAATTGAGAGAACACTAGCTTATCTCATGAGTGCTCAGATTCACTCTTAAGAGGGCAGTCCTGTTACCATTCCTAttctattttttt------ttttccttgagatggagtctccctctgtcacccaggctggagt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59952516 157 +  64156825 ACCTAAAACCTTTTCTTACTTCCAAATTGAGAGAATACTAGCTTATCTCGTGAGTGCTCAGACTCACTCTTAGGAGGGCAGTCCTGTTACCATTCCTAttc--ttttttttttccattttccttgagacggagtctccctctgttgcccaggctggagt
i rheMac3.chr19             I 8 C 0
s macFas5.chr19              54956458 158 +  59248254 ACCTAAAACCTTTTCTTACTTCCAAATTGAGAGAATACTAGCTTATCTCGTGAGTGCTCAGACTCACTCTTAGGAGGGCAGTCCTGTTACCATTCCTAttct-ttttttttttccgttttccttgagacggagtctccctctgttgcccaggctggagt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47086420 158 +  51301725 ACCTAAAACCTTTTCTCACTTCCAAATTGAGAGAATACTAGCTTATCTCGTGAGTGCTCAGACTCACTCTTAGGAGGGCAGTCCTGTTACcattcctattct-ttttttttttccgttttccttgagacggagtctccctctgttgcccaggctggagt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46794288 158 +  50890351 ACCTAAAACCTTTTCTCACTTCCAAATTGAGAGAATACTAGCTTATCTCCTGAGTGCTCAGACTCACTCTTAGGAGGGCAGTCCTGTTACCATTCCTAttct-ttttttttttccgttttccttgagacggagtctccctctgttgcccaggctggagt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45367378 156 +  49145316 ATCTAAAAGCTTTTCTCACTTCCACATTTCGGGAACACTGGCTTATCTCTTGAGTAGTCAGACT--GTCTTA-GAGGGCAGTTCTGTTACCACTCCCAttctctctcttttttattttttcctttcgacagagtctcactctctcgcccaggctggagt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19590638  87 - 122678785 I
e nomLeu3.chr10             102667141 1722 - 106955855 M

a score=734064.000000
s hg38.chr19_GL949751v2_alt     94042 248 +   1002683 gcagtgatgtgttcttggctcattgcaacctccacctcccgggttcaagcgattctcctccctcagccttatgtatagctgggattacaggtatgcaacaccatgcctggctattttgta--ttttttagtagagatggg--gtttcaccatgttgaccaggctagtctcgaactcctgacctcaagtaatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactacgcccagccTT
s panTro4.chr19              59027607 248 +  63644993 gcagtgatgtgatcttggctcattgcaacctccacctcccgggttcaagcgattctcctccctcagccttatgtatagctgggattacaggtatgcaacaccatgcctggctattttgta--ttttttagtagagatagg--gttttaccatgttgaccaggctagtctcgaactcctgacttcaagtaatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactacgcccagccTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55905468 248 +  60714840 gcagtgatgtgatcttggctcattgcaacctctgcctcctgggttcaagcgattctcctccctcatccttatgtgtagctgggattacagttgtgcaacaccatgcctagctattttgta--ttttttagtagagacggg--gtttcaccatgttgaccaggctagtctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102668863 247 - 106955855 gcagtgatatgatcttgg-tcattgcaacctctgcctcccgggttcaagcgattctcctccctcagcgttatgtgtagctgggattacaggtatgcaacaccatgcctggctattttgta--ttttttagtagagacggg--gtttcaccatgttgaccaggctagtctcgaactcctgacctcaagtaatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccactacgcccagccTT
i nomLeu3.chr10             M 1722 C 0
s rheMac3.chr19              59952673 248 +  64156825 gcagtgatgtgatcttggctcactgcaacctctgcctcccgggttcaagtgagtctcctccctcagccacctgagtagctgagatgacaggtgtgcaccaccacgcctggctattttgta--ttttttagtagagacggg--gtttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54956616 248 +  59248254 gcagtgatgtgatcttggctcactgcaacctctgcctcccgggttcaagtgagtctcctccctcagccacctgagtagctgagatgacaggtgtgcaccaccacgcctggctattttgta--ttttttagtagagacggg--gtttcatcatgttggccaggctgctctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47086578 248 +  51301725 gcagtgatgtgatcttggctcactgcaacctctacctcccgggttcaagtgattctcctccctcagccacctgagtagctgagatgacaggtgtgcaccaccacgcctggctattttgta--ttttttagtagagacggg--gtttcatcatgttggccaggctggtctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagcctt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46794446 248 +  50890351 gcagtgatgtgatcttggctcactgcaacctctgcctcccaggttcaagtgattctcctccttcagccacctgagtagctgagatgacaggtgtgcaccaccacgcctggctattttgta--ttttttagtagagacggg--gtttcatcatgttggctaggctggtcccgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45367534 252 +  49145316 gcagtggtatgatcttggctcattgcaacctccacctcccaggttcaagcgattctcctgcctccgcctcccgagtagctgggattacaggcatgcaacaccatgtctggctattttgtattttttttagtagagacggggtgtttcaccatgttggtcaggctggtcttgaacctctgacctcaagtgaccagcccacctcggcctcccaaagtgccaggattacaggcatgagccactgctcctggccTT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19590638  87 - 122678785 I

a score=1749891.000000
s hg38.chr19_GL949751v2_alt     94290 574 +   1002683 CCCATTCTTCTT-----------------GAATGGAATTTGTTGATGACAGGAAGCCATAGGAGGTTTCTGGGGAAAGAAGTGTAGTGAG-AGGGCAGAGTTTCGGG-AGACTCACTGCTTGCTTTCTT-----TAACGTTTACctg-ggcacccagttg--------------------------------aatcgcccaggtctttgctctcaaagtactcaaggtctagtggaagaggcaggccaggttccagacagctatcagt-ggtggtacc--------------aagctggggacaccggagccacaggagggactggctgaccctgccccaggtgtcagg-aagaatcgatagctgaattggactgtagagcatgaatgcatgtgccaggcaaagaaagggagaagggggccca-----------------gggaaagacagcggcaggcccggggcctcagatatccggagagaga---------------------------atcctgcagagttccagATGCCAGGCCAAGGAATTTCTCCCTCCAGAGGGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCCGTCACACCCGGTGTCTGGTTGAGGAGGCAGAGGTGAAACATCTCACAAGCT-GTGGCAGTCCCTG
s panTro4.chr19              59027855 561 +  63644993 CCCATTCTTCTT-----------------GAATGGAATTTGTTGATGACAGGAAGCCATGGGAGGTTTCTGGGGAAAGAAGTGTAGTGAG-AGGGCAGAGTTTCGGG-AGACTCACTGCTTGCTTTCTT-----TAACGTTTACctg-ggtacccagttg--------------------------------aatcgcccaggtctttgctctcatagtactcaaggtctagtggaagaggcaggccaggttccagacagctatcagt-ggtggtacc--------------aagctggggacaccggagccacaggagggactggctgaccctgccccagatgtcagggaagaatcgatagctgaattggactatagagcatgaatgcatgtgccaggcaaagaaagggagaagggggccca-----------------gggaaagacagcggcaggCCCGGGGCCTCAGATATCCAGAGAGA-----------------------------------------TCCAGATGCCAGGCCGAGGAATTTCTCCCTCCAGAGGGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCCGTCACACCCAGTGTCTGGTTGAGGAGGCAGAGGTGAAACATCTCACAAGCT-GTGGCAGTCCCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55905716 577 +  60714840 CCCATTCTTCTT-----------------GAATGGAATTTGTTGACGACACAAAGTCATGGGAGGTTTCTGGGGAAAGAAGTGTCGTGAG-AGGGCAGAGTTTCGGG-AGACTCACTGCTTGCTTTCTT-----TAACGTTTACCTg-ggcacccagttg--------------------------------aatcgcccagttctttgctctcaaagtgctcaaggtctagtggaagaggcaggccaggttccagacagctatcggcgggtggtacc--------------aagctggggacaccggagccacaggagggactggctgaccctgccccaggtgtcagggaagaatcgatagctgaattggactgtagagcatgaatgcatgtgccaggtaaagaaagggagaagggggccca-----------------gggaaagatagctgcaggcctggggtctcagacatccagagagaga---------------------------atcctgcagagtTCCAGATGCCAGGCCGAGGAATTTCTCCCTCCAGAGGGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCTGTCACACCCGGTGTCTGGTTGAGGAGGTAGACGTGAAACATCTCACAAGCTGGTGGCAGTCCCTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102669110 573 - 106955855 CCCATTCTTCTT-----------------GACTGGAATTTGTAGACAACAGGAAGCCATGGGAGGTTTCTGGGCAAAGAAGTGTAGTGAG-AGGGCAGCGTTTCAGG-AGACTCACTGCTTG----CTT-----TAACGTTTACCTg-ggcacccagttg--------------------------------aatcgcccaggtctttgctctcaaagtgctcaaggtctagtggaagaggcaggccaggttccagacagctgtcggcgggtggtacc--------------aagctggggacaccggagccacaggagggactggctgaccctgccccaggtgtcagggaagaatcgatagctgaatgggactgtagagcatgaatccatgcgccaggcaaagaaagggagaagggggccca-----------------gggaaagacagcggcaggCCCGGGGTCTCAGACATCCGGAGAGAGA---------------------------ATCCTGCAGAGTTCCAGATGCCAGGCCGAGGAATTTCTCCCTCCAGAGGGTTATGGGACACAG--AAAGTGACATTTCCTGATGTTAGGCCAGGCTCAGGGATGGAGTCAGACCCCATCACACCCGGTGTCTGGTTGAGGAGGTAGACGTGAAACATCTCACAAGCTCGTGGCAGTCCCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59952921 597 +  64156825 CCCATTCTTCTT-----------------GAATGGAATTTGTTGACAACAGGAAGCCATGGGAGGTTTCTGGGGGAAGAAGTGTAGTGGG-AGGGCAGAGTTTTGGG-AGACTCACTGCTTACTTGCTT-----TAAGGTTTACCTG-GGCACCCAGTTG--------------------------------AATTGCccgggtctttgcgctcaacgtgctcaaggtctagtggaagaggcaggccgggttccagacagctgtcggcgggtggtacc--------------aggctggggacgctggagtcacaggagggactggctgaccctgccccaggtgccagggaagaatcgatagctgaattggactctagagcgtgaatgcatgtgccaggcaaagaaagggagaagggggccc-----------------------agacagcggC-GGCCCGGGGCCTCAGGCATCTGGAGAGAGAGGGCAGGCTCTGGAGCAAAAACACCAGATCCTGCAAAGTTCCAGAGGCCAGGCCGAGGAATTTCTCCATCCAGAGAGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCTGTCACACCTGGTGTCTGGTGGGGGAGGAAGACGTGAAACACCTCACAGGCAGGTGGCAGTCCCCG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54956864 593 +  59248254 CCCATTCTTCTT-----------------GAATGGAATTTGTTGACAACAGGAAGCCATGGGAGGTTTCTGGGGGAAGAAGTGTAGTGGG-AGGGCAGAGTTTTGGG-AGACTCACTGCTTACTTGCTT-----TAAGGTTTACCTg-ggcacccagttg--------------------------------aattgcccgggtctttgcgctcaacgtgctcaaggtctagtggaagaggcaggccgggttccagacagctgtcggcgggtggtacc--------------aggctggggacgctggagtcacaggagggactggctgaccctgccccaggtgccagggaagaatcgatagctgaattggactctagagcgtgaatgcatgtgccaggcaaagaaagggagaagggggccc-----------------------agacagcggC-GGCCCGGGGCCTCAGGCATCTGGAGAGAGAGGGCAGGCTCTGGAGC----GCACCAGATCCTGCAAAGTTCCAGAGGCCAGGCCGAGGAATTTCTCCATCCAGAGAGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCTGTCACACCTGGTGTCTGGTGGGGGAGGAAGACGTGAAACACCTCACAGGCAGGTGGCAGTCCCCG
i macFas5.chr19             C 0 I 174
s papAnu2.chr19              47086826 591 +  51301725 cccaTTCTTCTT-----------------GAATGGAATTTGTTGACAACAGGAAGCCATGGGAGGTTTCTGGGGGAAGAAGTGTAGTGAG-AGGGCAGAGTTTTGGG-AGACTCACTGCTTGCTTGCTT-----TAAGGTTCACCCA-GGCACCCAGTTG--------------------------------AATCGCCCGGGTCTTTGCGCTCAACATGCTCAAGGTCTAGTGGAAGAGGCAGGCCAGGTTCCAGACAGCTGTCGGCGGGTGGTACC--------------AGGCTGGGGACGCTGGAGTCACAGGAGGGACTGGCTGACCCTGCCCCAGGTGCCAGGGAAGAATCGATAGCTGAATTGGACTCTAGAGCGTGAATGCATGTGCCAGgcaaagaaagggagaa---ggcCC-----------------------AGACAGCGGCAGGCCCGGGGCCTCAGGCATCTGGAGAGAGAGGGCAGGCTCTGGAGC----GCGCCAGATCCTGCAGAGTTCCAGATGCCAGGCCGAGGAATTTCTCCATCCAGAGAGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCTGTCATACCTGGTGTCTGGTGGGGGAGGAAGACGTGAAACACCTCACAAGCAGGTGGCAGTCCCCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46794694 594 +  50890351 CCCATTCTTCTT-----------------GAATGGAATTTGTTGACAACAGGAATCCATGGGAGGTTTTTGGGGGAAGAAGTGTAGTGAG-AGTGCAGAGTTTTGGG-AGACTCACTGCTTGCTTGCTT-----TAAGGTTTACCTg-ggcacccagttg--------------------------------aatcgcctgggtctttgcgctcaacgtgctcaaggtctagtggaagaggcaggccaggttccagacagctattggcgggtggtacc--------------aggctggggacactggagcctcaggagggactggctgaccctgccccaggtgccagggaagaatcgatagctgaattggactctagagcgtgaatgcatgtgccaggcaaagaaagggagaagggggccc-----------------------agacagtggCAGGCCTGGGGCCTCAGGCATCTGGAGAGAGAGGGCAGGCTCTGGAGC----GCGCCAGATCCTGCAGAGTTCCAGATGCCAGGCCGAGGAATTTCTCCATCCGGAGAGTTATGGGACACAG--AAAGTGACATTTCCTGATGTCAGGCCAGGCTCAGGGATGGAGTCAGACCCCGTCACACCTGGTGTCTGGTGGGGGAGGAAGACGTGAAACACCTCACAAGCAGGTGGCTATCCCCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45367786 614 +  49145316 CCCATTCATCTT-----------------GAATGAAATTTCCTGACAACAGGAAGCCATGGGAGGTTGCTGGGCAAAGACGTGT-GTGAG-AAAGCCGAGTTTCAGG-AGACCCACTGCCTGCTGTCTT-----TAATGTTTACctg-ggcacccagtgg--------------------------------aaacccccaggtctgtgctct-aatgtgctcaaggtctggtggaagaggcaggccaagttccagacagctgtcagtgggtgatacc--------------aagctggggccactggagccacaggagggactggctgaccctgccccaggggtcagggaagaattgatggctgaactggactctagagcatgaatgcatacgccaggggaagaaagggaggaaggggcctgggaaagaaaaGGGGGCCGGGAAAGAAAGCGGCACGCCCAGGGCCTCAGATACTAGGAGTGAGAGGGCGGGCTCAGGAAT----GTGCCAGATCCTGCAGGGTTCCAGATGCCAGGCCGGGGAACTTCTCCATCCAGAGAGTTATGGGACACAG--AAGGTGACATTTCCTGATGTCAGGCCAGGAGCAGGGAT-GAGTCAGATCCCGTCATACACGGTGTCTGGTTGGAGAGGTAGTCATGAAACATCTCACAAGCAGGTGGCAGTTCCTG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19590725 634 - 122678785 CCCATTCTTCTTAACAGTTTGGAGTTCCGGAATGGAATTCATTGGCAG-AGGCAGCCATGGGAGGTTG-TCAGTGCAGCAGTGGTGTGGGCAGAGCAGAGTTGCAGGCAGACCTACTCTTTCCTTCCTTCCTTGTAAAGTTTTCATGAGGTGCCCTGTGGCAAGCCCGCATGGGCACTGGGTGCACTGGGGAACCCACCCAACTCTCTGCTCTCAGGATACTCGGTGTCTGGCAAAGCGGATAGGTCAGG-TCTGGGCAGTGGTT-GTGGGCGGTGCCTGCTGGGGTGGGGAGAGCTGGGGGCATTGGAGCCACCAGAGCGG--GGCTGACCCTGCCTCAGG--------------CCATACCTGAAATTGGCTTTGAAGCATGAATACACATACCAGGCCAAGAACAGCAGCTATATGCCCT-----------------GAGAAAGAGAACTGTGTGTGCAAAGCCTCACATGTCTGGAGTGGCAGAGGCAGCAGGAGAAA----GTGCCAGATCCTGCAGGATTTTGAGCACCAGG-----------------CCAGCGAGCTGTGGGGAGCGGTAGAAGGGACACTCCCTGATGTCGGGTCAGGCTCGGAGTTAG-GTCAGACCTGATCTCACCTGGTgtttggtggaggaggtgaacacagaacacctccaacctgggtggcggttatg-
i canFam3.chr1              I 87 C 0
e mm10.chr7                   3631070 1141 + 145441459 I

a score=109212.000000
s hg38.chr19_GL949751v2_alt     94864 34 +   1002683 TTTACTGGAGGT-GCACAAGTGCTGCGGGTACACA
s panTro4.chr19              59028416 34 +  63644993 TTTACTGGAGGT-GCACAAGTGCTGCGGGTACACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55906293 34 +  60714840 TTTACTGGAGGT-GCACAAGTGCTGCGGGTACACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102669683 34 - 106955855 TTTATTGGAGAT-GCACAAGTGCTGCGGGTACACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59953518 34 +  64156825 TTTACTGGAGGT-GCACGAGTGCTGCGGGCACACA
i rheMac3.chr19             C 0 I 232
s macFas5.chr19              54957631 34 +  59248254 TTTACTGGAGGT-GCACAAGTGCTGCGGGCACACG
i macFas5.chr19             I 174 C 0
s papAnu2.chr19              47087417 34 +  51301725 TTTACTGGAGGT-GCACAAGTGCTGCGGGTACACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795288 34 +  50890351 TTTACTGGAGGT-GTGCAAGTGCTGCGGGTACACA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368400 32 +  49145316 TTTATTGGAG---GCACAAGTGCTGCAGGTACCCA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19591359 35 - 122678785 tctaacggatgtggcaggagttccgcaggagcaca
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I

a score=522952.000000
s hg38.chr19_GL949751v2_alt     94898 169 +   1002683 GAGGAGGCGTCTGATCCTTCCAGAAAGGGAGGGAAGGATTCTGAGTCGCTGCCTGAGTCTTAAGGACTTAAAGAGCCATTTGagc-atcagggttaggagtgcagactctgacgccgccctgcctggtgtcagatctgagctctgccttctactgg--ctgtgacatcaggc
s panTro4.chr19              59028450 169 +  63644993 GAGGAGGCGTCTGATCCTTCCAGAAAGGGAGGGAAGGATTCTGAGTCGCTGCCTGAGTCTTAAGGACTTAAAGAGCCATTTGagc-atcagggttaggaacacagactctgaagccaccctgcctggtgtcagatctgagctctgccttctactgg--ctgtgacatcaggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55906327 169 +  60714840 GAGGAGGCGTCTGATCCTTCCAGAATGGGAGGGAAGGATTCTGGGTCGCTGCCTGAGTCTTAAGGGCTTAAAGAGCCGTTTGagc-atcagggttaggaacccagactctgaagccgccctgcctggggtcaggtctgagctctgccttctactgg--ctgtgGCATGAGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102669717 168 - 106955855 GAAGAGGCGTCTGATCCTTCTGGAAAGGGAGGGAAGGATTCTGAGTCGCTGCCTGAGTCTTAAGGACTTAAAGAG-CATTTGagc-atcagggttaggaacacagactctgaagccaccctgcctggggtcagatctgagctctgccttctactgg--ctgtgacatcaggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59953784 167 +  64156825 GAGGAGGCGTCTGATCCTCCCAGACAGGGAGGGAAGGATTCTGAGTCACTGCTGGAGTCTTAAGGACTTAAAGAGCCTTTTGagc-atcagggttaggaacac--attctgaagccaccctgcttggggtaaggtctgagctctgctgtctactgg--cggtgacatcagac
i rheMac3.chr19             I 232 C 0
s macFas5.chr19              54957665 167 +  59248254 GAGGAGGCGTCTGATCCTCCCAGACAGGGAGGGAAGGATTCTGAGTCACTGCTGGAGTCTTAAGGACTTAAAGAGCCTTTTGagc-atcagggttaggaacac--attctgaagccaccctgcttggggtcaggtctgagctctgctgtctactgg--cggtgacatcagac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47087451 167 +  51301725 GAGGAGGCATCTGATCCTCccagaaagggagggaaggattCTGAGTCACTGCCGGAGTCTTAAGGACTTAAAGAGCCTTTTGAGC-ATCAGGGTTAGGAACAC--ATTCTGAAGCCACCCTGCTTGGGGTCAGGTCTGAGCTCTGCTGTCTACTGG--CTGTGACATCAGAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795322 167 +  50890351 GAGGAGGCGTCTGATCCTTCCAGAAAGGGAGGGAAGGATTCTGAGTCACTGCCGGAGTCTTAAGGACTTAAAGAGCCATTTGagc-atcagggttaggaacac--attctgaagccaccctgcttggggtcaggtctgagctctgctgtctactgg--ctgtgACATCAGAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368432 155 +  49145316 GAGAAGGCATCTGATCCTTCCGGAAAGGGAGGGAACGGTTCTGAGTCGCTGCCTGAGTCTTAAGCACCACAAGAGCCATTTGagc-atcagggttaggagcacagactctgcagccaccctgcctggggtcagatttgagctct----------------gtgacATCAGGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19591394 154 - 122678785 gaggagacatctgaccctcctgaagggggagggaaggatcctgaggtgctgtctgagTCTCAAGA---TGCAGAAACATTTGAGTGATCAGggttaagaatgcaggtgc---------------tggggctagatctcaggtctgccatctgctgggtccatggctttaggc
i canFam3.chr1              C 0 I 259
e mm10.chr7                   3631070 1141 + 145441459 I

a score=456153.000000
s hg38.chr19_GL949751v2_alt     95067 159 +   1002683 agttaGTATTTGCATGACTTTTAAACACAACAtc-tttttgtttgtttgttttttgagacagggtctcactctgtcacccaggccagaatgcagtggcacgatcccagctcactgcagccttgacct-------tgtgggctcaggcgttcctgcctcagcctccca
s panTro4.chr19              59028619 156 +  63644993 agttaGTATTTGCATGACTTTTAAACACAACAtc-tttttgtttgtttgttttttgagacagggtctcactctgtcacccaggccagaatgcagtggcacgatcccagctcactgcagccttgacct----------gggctcaggcgttcctgcctcagcctccca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55906496 159 +  60714840 AGTTAGTATTTGCATGACTTTTAAACACAACAtc-tttttgtttgtttgttttttgagacagggtctcactctgtcacccaggccagaatgcagtggcacgatcccagctcactgcagccttgacct-------tctgggctcaggcgttcctgcctcagcctccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102669885 159 - 106955855 agttaGTATTTGCATGACTTTTAAACACAACAtc-tttttgtttgtttgttttttgagacagggtctcactctgtcacccaggccagaatgcagtggcacgatcccagctcactgcagccttgacct-------tctgggctcaggcattcctgcctcagcctccca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59953951 155 +  64156825 agttaGTATTTGTATGACATTTAAACACAACAtc-----tttttgtttgttttttgagacagggtctcactctgtcacccaggccagaatgcagtggcacgatcgcagctcactgcagccttgacct-------tctgggctcaggtgttcctgcctcagcctccca
i rheMac3.chr19             C 0 M 136
s macFas5.chr19              54957832 155 +  59248254 agttaGTATTTGTATGACATTTAAACACAACAtc-----tttttgtttgttttttgagacagggtctcactctgtcacccaggccagaatgcagtggcacgatcacagctcactgcagccttgacct-------tctgggctcaggtgttcctgcctcagcctccca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47087618 155 +  51301725 AGTTAGTATTTGTATGACATTTAAACAcaacatc-----tttttgtttgttttttgagacagggtctcactctgtcacccaggccggaatgcagtggcacgatcacagctcactgcagccatgacct-------tctgggctcaggtgttcctgcctcagcctccca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795489 156 +  50890351 ----AGTATTTGTATGACATTTAAACACAACAtcttttttttttgtttgttttttgagacagggtctcactctgtcacccaggccggaatgcagtggcacgatcacagctcactgcagccttgacct-------tctgggctcaggtgttcccgcctcagcctccca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368587 159 +  49145316 AGTGAG----TGTATGACATTTAAACACAGCATC---ACtttttgtttgttttttgagacagggtctcactctgaca-ctaggtgagaatgcagtggcatgaacgcagctcactgcagccctgaccttctgggttctgggttccggcgttcctgcctcagcctccca
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19591548 259 - 122678785 I

a score=327248.000000
s hg38.chr19_GL949751v2_alt     95226 145 +   1002683 ggcagctgggaccacaggtgtacaccaccatgcctggctaatt-ttttttctttaattatgtgtagagatggggtctccctatgtcgcccaggttgctctccaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
s panTro4.chr19              59028775 145 +  63644993 ggcagctgggaccacaggtgtacaccaccatgcctggctaatt-ttttttctttaattatgtgtagagatggggtctccctatgtcgcccaggttgctctccaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55906655 144 +  60714840 ggcagctgggaccacaggtgtacacc-ccatgcctggctaatt-ttttttctttaattatgtgtagagatggggtctccctatgtcgcccaggttgctctccaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102670044 140 - 106955855 ggcagctgggaccacaggtgtacaccaccatgcctggctaatt-tt-----tttaattatgtgtagagatggggtctccctatgtcgcccaggttgctctccaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54957987 146 +  59248254 ggcagttaggaccacaggcatacaccaccatgcctggctaattattttttctttaattatttgtagagatggggtctccctatgttgcccaggttgctcttgaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47087773 146 +  51301725 ggcagttaggaccacaggcatacaccaccatgcctggctaatttttttttctttaattatttttagagatggggtctctctatgttgcccaggttgctcttgaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795645 146 +  50890351 ggcagttaggaccacaggcatacaccaccatgcctggctaattattttttctttaattatttgtagagatggggtctccctgtgttgcccaggttgctcttgaactcctgggctcaagcagttctcctgcctcagcctcccaaagt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368746 143 +  49145316 gatagctaggaccacaggcatacaccaccatgcctggctcatt-ttttttctttaattatctgtagagatgggatc-ccctgtgtcgcccagtttgctctgaaac-actgggctcaagcagttctccagcctgcgcctcccaaagt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19591548 259 - 122678785 I
e rheMac3.chr19              59954106 136 +  64156825 M

a score=95902.000000
s hg38.chr19_GL949751v2_alt     95371 30 +   1002683 gctgggattacaggtatgagccactgtgcc
s panTro4.chr19              59028920 30 +  63644993 gctgggattacacttatgagccactgtgcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55906799 30 +  60714840 gctgggattacaggtatgagccactgtgcc
i ponAbe2.chr19             C 0 I 118
s nomLeu3.chr10             102670184 30 - 106955855 gctgggattacaggtatgagccactgtgcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59954243 30 +  64156825 gctaggattacaggcgtgagccactgtgcc
i rheMac3.chr19             M 136 C 0
s macFas5.chr19              54958133 30 +  59248254 gctgggattacaggtgtgagccactgtgcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47087919 30 +  51301725 gctgggattacaggtgtgagccactgtgcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795791 30 +  50890351 gctgggattacaggtgtgagccactgtgcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368889 30 +  49145316 gctgggattacaggtgtgagccactgtgcc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19591548 259 - 122678785 I

a score=34557.000000
s hg38.chr19_GL949751v2_alt     95401 16 +   1002683 -tgaccTCTTATTActa
s panTro4.chr19              59028950 16 +  63644993 -tgaccTCTTATTActa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102670214 16 - 106955855 -tggccTCTTATTActa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59954273 16 +  64156825 -tggccTCTTATTActa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54958163 16 +  59248254 -tggccTCTTATTActa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47087949 16 +  51301725 -tggcctcttattACTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795821 16 +  50890351 -tggccTCTTATTACta
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368919 17 +  49145316 tggccCCCTTATAACCA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19591548 259 - 122678785 I
e ponAbe2.chr19              55906829 118 +  60714840 I

a score=1010476.000000
s hg38.chr19_GL949751v2_alt     95417 391 +   1002683 aagcacaaagaagcgttttccagaaacagacgtggggtaagggatgctctggggagagggagcagcacatgcagaggccaggaggggtctggcgcggtggctcacgcctgtcatcccagcactttgggtggtcaaggcagatggatcacctgaggtcgggagttcgagaccagcctgcccaacatggtgaaaccccgtctctactaaaaatacaaacaaacaaaaaaaattagccgggcgtggtggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcatgccactatactctagcctgggcaaccagagcgaaattatgtctcaaaaaaaaaa-aa
s panTro4.chr19              59028966 388 +  63644993 aagcacaaagaagcgttttccagaaacagacgtggggtaagggacgctctggggagaaggagcagcacatgcagaggccaggaggggtctggcgcggtggctcacgcctgtcatcccagcactttgggtggtcaaggcagatggatcacctgaggtcgggagttcgagaccagcctgcccaacatggtgaaaccctgtctctactaaaaatacaaaaaaa-aaaaaaaattagctgggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcatgccactatactctagcctgggcaaccagagcgaaattatgtctcaaaaaaaaaa---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55906947 378 +  60714840 AAGCACAAagtagcgtttcccagacacagaca-ggggt-agggacgctct-gggagagggaacaccacatgcaaagccca-gaggggtcgggcgt-gtagcttacgcctgtcatcccagcactttgggtggtcaaggcaggtggatcacctgaggttgggagttcgagaccagcctgcccaacatggtgaaaccctgtctctactaaaaatacaa------aaaaaaaattagttgggcgtggtggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcgtgccactatactctagcctgggcaacaagagcgaaattatgtctcaaaaaaaaaa---
i ponAbe2.chr19             I 118 C 0
s nomLeu3.chr10             102670230 390 - 106955855 aagcacaaagaagcgttttccagaaacagacatggggtaagggacgctctggggagagggaacagcacatgcaaaggccaggaggggtctggcatggtggctcacgcctgtcatcccagcattttgggtggtcaaggcaggtggatcacctgaggtcgggagttcgagaccagcctgcccaacatggtgaaaccctgtctgtactaaaaatataaaaaa--aaaaaaaattagctgggcgtggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagctgagatcatgccactatactctagcctgagcaacaagagcgaaattatgtctctaaaaaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59954289 378 +  64156825 aagcacaaagaagggttttccagaaacagacatggggtaagggatgctctggggagagggaacagcatatgcaaagtccaagaggggccttgcatggtggctcatgcctgtcgtcccagcac--tgggtggccaaggctggtggatcacctgaggtcgggagttcgagatcagtctgcccaacatggtgaaaccccatctctactaaaaatac--------aaaacaagttcgcggggcgtggtggcgggcgcctgtaatcccaactacttggggggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatcgtgccactacactctagcctgggcaacaagagtgatactccatctc-aaaaaaaaa---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54958179 379 +  59248254 aagcacaaagaagggttttccagaaacagacatggggtaagggatgctctggggagagggaacagcatatgcaaaggccaagaggggccttgcatggtggctcatgcctgtcgtcccagcac--tgggtggccaaggctggtggatcacctgaggtcgggagttcgagatcagcctgcccaacatggtgaaaccccatctctactaaaaatac--------aaaacaagttagcagggcatggtggcgggcgcctgtaatcccaactacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatcgtgccactacactctagcctgggcaacaagagtgacactccatctcaaaaaaaaaa---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47087965 379 +  51301725 AAGCACAAAGAAGGGTTTTCCAGAAATAGACATGGGGTAAGGGACGCTCTGGGGagagggaacagcatatgcaaaggccaGGACGGGCcttgcatggtggctcatgcctgtcgtcccagcac--tGGGTggtcaaggctggtggatcacctgaggttgggagttcgagatcagcctgcccaacatggtgaaaccccatctctactaaaaatac--------aaaacaagttagcggggcatggtggcgggtgcctgtaatcccaactacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatcgtgccactacactctagcctgggcaacaagagtgacactccatctcaaaaaaaaaa---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46795837 379 +  50890351 aagcacaaagaagggttttccagaaacagacatggggtaagggatgctctggggagagggaacagcatatgcaaaggccaggaggggccttgcatggtggctcatgcctgtcgtcccagcac--tgggtggtcaaggctggtggatcacctgaggtcgagagttcgagatcagcctgcccaacatggtgaaaccccatctctactaaaaatac--------aaaacaagttagcgggggatggtggcgggcgcctgtaatcccaactacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatcgtgccactacactctagcctgggcaacaagagtgaaactccatctcaaaaaaaaaa---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45368936 353 +  49145316 AAGCACAA---AGGGTTTTCtggaaacagacgtg-----------------gggagacggaacagcatatgcagaggccaggaggggccagatgcagtgggtcacccctgtaaccccaccactgtggggggcccaggcgggcggatcacctgaggttgggagttcgagaccaacctggccaacatggtgaaaccccatctctactaaaaataccc------ccaaaaatttagctgggcatggtggcacatgcctgtaattccacctactgaggaggcccaggc---agaattgcttgaacctgggaggcggaagttgcagtgagccgagatggtgct------ctgtagcctgggcaacaagagcgaaactccg-agaaaaaaaaaaa---
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3631070 1141 + 145441459 I
e canFam3.chr1               19591548 259 - 122678785 I

a score=157140.000000
s hg38.chr19_GL949751v2_alt     95808 52 +   1002683 aaaggctaggaggagtgggtgt-----------ctgggg-cactgtgatcactcctttatggct
s panTro4.chr19              59029354 50 +  63644993 ---ggctaggaggagtgggtgt-----------ctgtgatcactgtgatcactcctttatggct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55907325 51 +  60714840 -aaggctaggaggagtgggtgt-----------ctgggg-cactgtgatcactcctttatggct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102670620 52 - 106955855 aaagcctaggaggagtgggtgt-----------ctgggg-cactgtgatcactcctttatagct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59954667 49 +  64156825 ---ggccaggaggagtgggtgt-----------ctgggg-cactgtgaccagtcctttatggct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54958558 49 +  59248254 ---ggccaggaggagtgggtgt-----------ctgggg-cactgtgaccagtcctttatggct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47088344 49 +  51301725 ---ggccaggaggAGTGGGTAT-----------CTGGGG-CACTGTGACCAGTCCTTTATGGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46796216 49 +  50890351 ---ggccaggaggagtgggtgt-----------ctgggg-cactgtgaccagtcctttatggct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45369289 49 +  49145316 ---ggccaggaggagtgggtgt-----------ccaggg-cactgcaatcagtcctttgtggct
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19591807 63 - 122678785 agaggcccagaggagaggaagcagccctgagtgctcggg-cactgcagtcagtccttcctggct
i canFam3.chr1              I 259 C 0
e mm10.chr7                   3631070 1141 + 145441459 I

a score=5351595.000000
s hg38.chr19_GL949751v2_alt     95860 1748 +   1002683 ggagtggaataaaatga-ggtgt---------ggtgagaggatggggcgggaagggcg-ggaggccag-actgCAGAGCTGCTGAGtcagcaaacaggaacgggggaactccctgtgtgccaggtgctgtcctgggtactc---ggctgtgggtacagccaacgcaggcacagcactggtccctgcagagcttccggagttggggaggcCCTGAATGTCAGTCTGAGGA-CTCG---------GTCATTAGCCTTGGGGCTGTGGGGAG-CCGTAGGAGGTTTCA----CACGGTCAGTTCTGGGGT-AGATGGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGAAG----GCAGGAACACAAGTTCAGG-GATGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGACATCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCCTCCCAACTTCATCCTCCGCCTCCTCCAGCTGCGGGACCCGAGAGGGGGTAGGGATTTAGATACTCA--CACCCATGC--CTCCGTGTCCTCACAGTGATGGGACCAGTGGAGGCCGCGCCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCTGGGGGGCAG--GCGGAGACAGCCCCGTGTGACGTCCCTCACGCCCCCTCTCCC------------------------------------TTCCCCA---------------------CTGGCCTTTCCCAGGGTCCTGCCCCTAAGCC------CAA-----GCTCAGATCGAGGTTGACCTGCTGTCACAGagtggctgaaataagaaggaagtgcgttct---ctcg--------------------------------------------cgtatgagtctgag-gagca-ctcggggatggtgtggccgcttggctgcctgtagggccccggctctttccatcctgttggtcggccacctgcctcacggtgcgaggtgactgccccacctccagccatcacctccgcattcccaccagca----------------aggcgct--tc-ttttctttaagaaca-------------------tg------------------tcactg-----cagctcacgttttacagac-----cagaactaattcccctggtcacacctagcggtaaggacggctgagaa----aggctgtatgct-ggtgcccgtgtgccaggccacaagccagggcttcagttactaaaggaagaag--gggacatgggtgttagggccaaccagcagagtctaccTTCCATCTCACCCGACAACCTCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCAAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGCGCAGAGAAG----------------GTGGGGTG-----------------------------CTTCTG-------CTGGCGTGAAGGGGCAGGCGGGGCTCA---------------------CTCTCGGACCCCCTCCCAGAGGCCTCAG-------------------GGTCTGGAGACGATGGAGAGGAGTGGACGAGGGCTCAGTGGT-CTGCTCTGCCCAGCGTGGGAGGGACGGAGCCTGGACAGGACTT----------TCTCAGGGCTCCCCTCCAACCCC-------------------------AGTCTCCCGAGAGGGCTTCCCCGCTG-----GCCTGA----------------------------CCCACGCTGCTCCCGCTGTGGTTGGAGCCGGTGGCATT-GGAGTTGACATCCGAAGGTTGACACAGGG-CAGGCACACGGAGATTTGGGGCAGAGAGACGTC-TAAGTGCAGAGAGCTGGA---------------------------------GA-GGGAAC-------------------------------------------------AAGT---------------GGGGAGGAAGTGAGGCGGGGAAGGAGGGGACGG-GGAAGAGGTCGGATC--------ACGTCCAG-CCTTTGGGTCTTAGGAGAAAGCCAAGGAAGGGTTTCGG---------AAAAGA--GGGGCAGGTGTGCGTGAGGGCGGGGA----GAGGAGGAGGTCCCCACGCATGTCCAGGAAAGGATTAGGATG
s panTro4.chr19              59029404 1713 +  63644993 ggagtggaataaaatgg-ggtgt---------ggtgagaggatggggcgggaagggca-ggaggccag-actgCAGAGTTGCTGAGtcagcagataggaactgggcaactccctgtgtgccaggtgctgtcctgggtactc---gggtgtgggtacagccaacgcaggcacagcactggtccctgcagagcttctggagttggggaggcCTTGAATGTCAGTCTGAGGA-CTCG---------GTCATTAGCCTTGGGGCTGTGGGGAG-CTGTAGGAGGTTTCA----CACGGTCAGTTCTGGGGT-GGATGGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGAAG----GCAGGAACACAAGTTCAGG-GATGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGACATCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCCTCCCAACCTCATCCTCCGCCTCCTTCAGCTGCGGGACCCGAGAGGGGGTAGGGAGTTAGATACTCA--CACCCATGC--CTCCGTGTCCTCACAGTGATGGGACCAGTGGAGGCAGCACCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAATGAGCTGAGTGAGTGCTGGGGGGCAG--GCGGAGACAGCCCTGTGTGACGTCCCTCACGCCCCCTCTCCC------------------------------------TTCCCCA---------------------CTGGCCTTTCCCAGGGTCCTGCCCCTAAGCC------CAA-----GCTCAGATCGAGGTTCACCTGCTGTCACAGagtggctgaaataagaaggaagtgcgttct---ctcg--------------------------------------------cgtatgagtctgag-gagca-cttggggatggtgtggccgcttggctgcctgtagggccccggctctttccatcctgttggtcggccacctgcctcacggtgcgaggtgactgccccacctccagccatcacctccgcattcccaccagca----------------aggcgct--tc-ttttctttaagaaca-------------------tg------------------tcactg-----cagctcacgttttacagac-----cagaactaattcccctggtcacacctagcggtaagggcggctgagaa----agcctttatgct-ggtgcccgtgtgccaggctacaagccagggcttcagttactaaaggaggaag--gggacatgggtgttagggccaaccagcagagtctatcTTCCATCTCACCCGACAACCTCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCAAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGCGCAGAGAAG----------------GTGGGGTG-----------------------------CTTCTG-------CTGGTGTGAAGGGGCAGGCGGGGCTCA---------------------CTCTCGGACCCCCTCCCAGAGGCCTCAG-------------------GGTCTGGAGACGATGGAGAGGCGTGGATGAGGGCTCAGTGGT-CTGCTCTGCCCAGCGTGGGGGGGACGGAGCCTGGACAGGACTT----------TCTCAGGGCTCCCCTCCTACCCC----------------------------------------------CGCTG-----GCCTGA----------------------------CCCACGCTGCTCCCGCTGTGGTCGGAGCCGGTGGCATT-GG--------------GGTTGACACAGGG-CAGGCACACGGAGATTTGGGGGAGAGAGACGTC-TAAGTGCGGAGAGCTGGA---------------------------------GA-GGGAAC-------------------------------------------------AAGC---------------AGGGAGGAAGTGAGGCGGGGAAGGAGGGGACGG-GGAAGAGGTCGGATC--------ACGTCCAG-CCTTTGGGTCTTAGGAGAAAGCCAAGGAAGGGTTTCGG---------AAAAGA--GGGGCAGGTGTGCGTGAGGGCTGGGA----GAGGAGGAGGTCCCCACGCGTGTCCAGGAAAGGATTAGGATG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55907376 1844 +  60714840 ggagtggaataaaatgg-gatgt---------ggtgagaggatggggtgggaagggcg-ggaggccag-actgCAGAGTTGCTGAGtcagcagataggaactgggcaactccctgtgtgccaggtgctgtcctgggtactc---gggtgtgggtatagccaacacaggcacagcactggtccctgcagagcttccggagttggggaggcCTTGAATGTCAGTCTGAGGA-CTTG---------GTCATTAGCCTTGGGGCTGTGGGGAG-CCGTAGGAGGTTTCA----CACAGTCAGTTCTGGGGT-GGATGGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGAAG----GCAGGAACACAAGTTCAGG-GATGTCTGCAGTCGTCAGCCTGTCGCCTGGTTTACTCT-----------------------------------------TCAGCCCCTCCGTCCTGACCCCTCCCAGCCTCATCCTCCGCC-----------------------------------------CCCTCCAGCTGCGGGACCCAGGAGGCAGACATCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCGTCCTGA-CCCCTCCCAGCCTCATCCTCCATCTCCCCCAGCTCTGGGACCCGAGAGGGGGTAGGGATTTAGATACTCA--CACCCATGC--CTCCGTGTCCTCACAGTGATGGGACCAGTGGAGGCAGCGCCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCTGGGGGGCAG--GCGGAGACAGCCCCGTGTGACGTCCCTCACGCCCCCTCTCCT------------------------------------TTCCCCA---------------------CTGGCCTTTCCCAGGGTCCTGCCCCTAAGCG------CAA-----GCTCAGATCAAGGTTCACCTGCTGTCACAGAGTGGTTGAAATAAGAAGGAAGTGCGTTCT---CTCG--------------------------------------------CGCATGAGTCTGAG-GAGCA-CTCGGGGATGGTGTGGCCGCTTGGCTGCCTGTAGGGCCCCGGCTCTTTCCATCCCGTTGGTTGGCCACCTGcctcacggtgcaaggtgactgccccacctccagccatcacctttgcattcccaccagca----------------aggcgct--tc-t----tttaagaaca-------------------tg------------------tcactg-----cagctcacattttacagac-----cagaactaattcccctggtcacacctagcggtaagggcggctaagaaatggaggctgtatgct-ggtgcccgtgtgccaggctacaagccagggcttcagttactaaaggaagaag--gggacattggtgttagggccaaccagcagagtctaccTTCCATCTCACCCGACACCCGCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCGAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGCGCAGAGAAG----------------GCGGGGTG-----------------------------CTTCCG-------CTGGTGTGAAGGGGCAGGCGGGGCTCA---------------------CTCTTGGACCCCCTCCCAGAGGCCTCGG-------------------GGTCTGGAGACGATGGAGAGGAGTGGGTGAGGGCTTAGTGGC-CCAGTCTGCCCAGCGTGGGAGGGACAGAGCCTGGACAGGACGT----------TCTCAGGGCTCCCCTCCTAACCC-------------------------GGTCTCCCGAGAGGGCGTCCCCTCTG-----GCCTGA----------------------------CCCGTGCTGCTCCCACTGTGGTCGGAGCGGGTAG-ATT-GGAGTTGACATCCGAAGGTTGACACAGGG-CAGGCACGCGGAGATTTGGGGGAGAGAGACGTC-TAAGTGCGGAGAGCTGGA---------------------------------GA-GGGAAC-------------------------------------------------AAGC---------------GGGGAGGAAGTGAGGCGGGGAAGGAGGGGATGG-GGAAGAGGTTGGATC--------ACGTCCAG-CCTTTGGGTCTTAGGAGAAAGCCAAGGAAGGGTTTTGG---------AAAAGA--GGGGCGGGTGCGCGTGAGGGCGGGGA----GAGGAGGAGGTCCCCATGCGTGTCTAGGAAAGGATTAGGATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102670672 1748 - 106955855 acagtggaataaaatgg-gatgt---------ggtaaggggatggagtgggaagggcg-ggaggccag-actgCAGAGTTGCTGAGtcagcagataggaactgggcaactccctgtgtgccaggtgctgtcctgggtactc---gggtgtgggtatagccaacgcaggcacagcactggtccctgcagagcttccggagttggggaggcCTTGAATGTCAGTCTGAGGA-CTTG---------GTCATTAGCCTTGGGGCTGTGGGGAG-CCGTAGGAGGTTTCA----CACGGTCGGTTCTGGGGT-GGATGGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGAAG----GCAGGAACACAAGTTCAGG-GATGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATGTCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCCTCCCAGCCTCATCCTCCATCTCCCCCAGCTGCGGGACCCGAGAGGGGGTAGGGATTTAGATACTCA--CACCCATGC--TTCCGTGTCCTCACAGTGATGGGACCAGTGGAGGCAGCGCCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCTGGGGGGCAG--GTGGAGACAGCCCCGTGTGACGTCCCTCACGCCCCCTCTCCC------------------------------------TTCCCCA---------------------CTGGCCTTTCCCAGGGTCCTGCCCCTAAGCC------CAA-----GCTCAGATCGAGGTTCCCCTGCTGTCACAGAGTGGCTGAAATAAGAAGGAAGTGTGTTCT---CCCG--------------------------------------------CGCATGAGTCTGAG-GAGCA-CTCGGGGATGGTGTGGCTGCTTGGCTGCCTGTAGGGCCCCGGCTCTTTCCATCCCGTTGGTCGGCCACTTGcctcacggtgcgaggtgactgccccacctccagccatcacctccgcattcccaccagca----------------aggcgct--cc-ttttctttaagaaca-------------------tg------------------tcactg-----ccgctcacagtttacagac-----cagaactaattcccctggtcacacctagcggtaagggcggctgagaaatggagcctgtatgct-ggtgcccgtgtgccaggctacaagccagggcttcagttactaaa----gaag--gggacatgggtgttagggccaaccagcagagtctaccTTCCATCTCACCCGACACCCGCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCAAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCGCTGGATTACATCCGCACGGTCAAGGTGAGAGCAGAGAAG----------------GCGGGGTG-----------------------------CTTCCG-------CTGGTGTGAAGGGGCTGGCGGGGCTCA---------------------CTCTCGGACCGCCTCCCAGAGGCCTCGG-------------------GGTCTGGAGACGATGGAGAGGAGTGGACGAGGGCTCAGTGGC-CTGCTCTGCCCAGCGTGGGAGGGATGGAGCCTGGACAGGACTT----------TCTCAGGGCTCCCCTCCTACCCC-------------------------CGTCTCCCGAGAGGGCTTCCCCGCTG-----GCCTGA----------------------------CCCATGCTGCTCCCACTGTGGTTGGAGCCCGTGGCATT-GGAGTTGACATCCGAAGGTTGACACAGGG-CAGGCACGTGGAGATTTGGGGGAGAGAGACATC-Taagtgcgaagagctgaa---------------------------------ga-gggaac-------------------------------------------------aagc---------------gaggaggaagTGAGGCGGGGAAGGAGGGGACGG-GGAAGAGGTCGGATC--------ATGTCCAG-CCTTTGGGTCTTAGGAGAAAGCCAAGGAAGGGTTTCGG---------AAGAGA--GGGGCGGGTGCGCGTGAGGGCGGGGA----GAGGAGGAGGTCCCCACGCGTGTCCAGGAAAGGATTAGGATG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59954716 1879 +  64156825 gga-------------------------------tgagaggatggggtgggaagggtg-ggaggccag-accgcagagttgctgagtcagcagagaggaactgggcagctccctgtgtgccaggtgctgtcccgagtactc---gggtgtgggtgtagataacgcaggcacagcactggtccctgcagagctTCTGGAGTTGGGCAGGCCTTGAATGTCAGTCTAGGAA-CTTG---------GTCATTAGCCTTGGGGCTATGGGGAG-CCATAGGAGGTTTCAGACGGACGGTCAGTTCCAGGGC-AGGTAGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGGAG----GCAGGAACACAAGTTCAGG-GATGTCTGCAGATGTCAGCCTGTCGCCTGCTTTACTCTTCAACCCCTCCTTCCTGACCCCCTCCAGCCTCGTCCTCCGCC----------------------------------------------------------------------------------TCCTCCAGCTGCAGGATCTGGGAGGCAGACGTCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCTTCCCAGCCTCATCCTCCGTCTCCCCCAGCTGTGGGACCTGAGAAGGGGTAGGGATTTAGATCCTCA--CACCCATGCCACTCCGTGTCCTCACAGTGATGGGACCGGTGGAGGCAGCGCCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCT-GGGGGCAG--GCGGAGACAGCCCCCTGTGACGCCCCTCATGCCCC--CTCCC------------------------------------TTCCCCA---------------------CGGGCCTTTCCCAGGGTCCTGCCGCTGAGCC------CAA-----GCTCAGATCGAGGTTCACCTGCTGTAACGGAGTGGTGTAAGTAAGAAGGAAGTGTGTTCTCC-CTCACGTATGAGTCTGAGCGAGCACTCGGGGACGGCGTGGCTCCCTCGCGTATGAGTCTGAGCGAGCA-CTCGGGGACGGCGTGGCCGCTTGGCTGCCTGTAAGGCCCCAGCCCTTTCCATCTTGTTGGTCGGCCACCTGCCTCGTGGTGCGAGGGGACTGCCCCACGTCCAGCCGTCGCCTCTGCATTCCCACCAGCA----------------AGGCACT--TC-TTTTTTTTAAGAaca-------------------tg------------------tcactg-----cagctcacattttacagac-----cagaactaattcccctggtcacacctagcggtaagggcggctgaaaaatggagcctgtatgct-ggtgcccgtatgccaggctacaagccagggcttcagttactaaaggaagaag--gggacgtgggtgttagggccaaccagcagagtctgccTCCCGTCTCACCTGACACCCGCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCGAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGAGCAGAGGAG----------------GAGCGGTG-----------------------------CTTCTG-------CTGGTGTGAAGGTGCAGGCAGGGCTCA---------------------CTCTCGGACCCGCCCCCAGAGGCCTCGG-------------------GGTCTGGAGGTGAAGGAGAGGAGTGGACGGAGGCTCAGTGGC-CTGCTCTGCCCAGGGTGAGAGGGACGGAGCCTGGATGGGACTT----------TCTCAGGGCTCCCCTCGTACCCC-------------------------AATCTCCCGAGAGGGCTTCCCCGCTG-----GCCTGA----------------------------CCCGCGCTGCTTCCGCTGTGGTCGGAGCCGGTGGCATT-GGAGTTGACATCCGAAGGTCGTCACAGGG-CAGGCACGCGGAGATTTGGGGGAGAGAGATGTGTTAAGTATGGAGAGCCGGA---------------------------------GA-GGGAAC-------------------------------------------------AAGC---------------GGGGAGGAAGTGAGGCGGGGAAGGAGGGGACGC-GGAAGAGGTCGGATC--------ACACTGAG-CCTTTGGGTCTTATGAGAAAGCCAAGGAAGGGTTTCGG---------AAAAGA--GGGGCGGATGCAGGTGAGGGCAGGGA----GAGGAGGCGGTCCCCACGTGTGTCCGGGAGAGGATCAGGATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54958607 1835 +  59248254 gga-------------------------------tgagaggatggggtgggaagggtg-ggaggccag-accgcagagttgctgagtcagcagagaggaactgggcagctccctgtgtgccaggtgctgtcctgagtactc---gggtgtgggtgtagataacgcaggcacagcactggtccctgcagagctTCTGGAGTTGGGCAggccttgaatgtcagtctaggga-cttg---------gtcattagccttggggctatggggag-ccataggaggtttcagacagaCGGTCAGTTCCAGGGC-AGGTAGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGGAG----GCAGGAACACAAGTTCAGG-GATGTCTGCAGATGTCAGCCTGTCGCCTGCTTTACTCT-----------------------------------------TCAACCcctccttcctgaccccctccagcctcgtcctccgcc-----------------------------------------tcctccAGCTGCAGGATCTGGGAGGCAGACGTCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCTTCCCAGCCTCATCCTCCGTCTCCCCCAGCTGTGGGACCTGAGAAGGGGTAGGGATTTAGATCCTCA--CACCCATGCCACTCCGTGTCCTCACAGTGATGGGACCGGTGGAGGCAGCGCCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCT-GGGGGCAG--GCGGAGACAGCCCCCTGTGACGCCCCTCATGCCCC--CTCCC------------------------------------TTCCCCA---------------------CGGGCCTTTCCCAGGGTCCTGCCGCTGAGCC------CAA-----GCTCAGATCGAGGTTCACCTGCTGTAACGGagtggtgtaagtaagaaggaagtgcgttctcc-ctca--------------------------------------------cgtatgagtctgagcgagca-ctcggggacggcgtggccgcttggctgcctgtaaggccccagccctttccatcttgttggtcggccacctgcctcgtggtgcgaggggactgccccacgtccagccgtcgcctctgcattcccaccagca----------------aggcact--tc-ttttttttaagaaca-------------------tg------------------tcactg-----cagctcacattttacagac-----cagaactaattcccctggtcacacctagcggtaagggcggctgaaaaatggagcctgtatgct-ggtgcccgtatgccaggctacaagccagggcttcagttactaaaggaagaag--gggacgtgggtgttagggccaaccagcagagtctgccTCCCGTCTCACCTGACACCCGCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCGAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGAGCAGAGGAG----------------GAGCGGTG-----------------------------CTTCTG-------CTGGTGTGAAGGTGCAGGCAGGGCTCA---------------------CTCTCGGACCCGCCCCCAGAGGCCTCGG-------------------GGTCTGGAGGTGAAGGAGAGGAGTGGACGGAGGCTCAGTGGC-CTGCTCTGCCCAGAGTGAGAGGGACGGAGCCTGGATGGGACTT----------TCTCAGGGCTCCCCTCGTACCCC-------------------------AATCTCCCGAGAGGGCTTCCCCGCTG-----GCCTGA----------------------------CCCGCGCTGCTTCCTCTGTGGTCGGAGCCGGTGGCATT-GGAGTTGACATCCGAAGGTCGACACAGGG-CAGGCACGCGGAGATTTGGGGGAGAGAGATGTGTTAAGTATGGAGAGCCTGA---------------------------------GA-GGGAAC-------------------------------------------------AAGC---------------GGGGAGGAAGTGAGGCGGGGAAGGAGGGGACGC-GGAAGAGGTCGGATC--------ACACTGAG-CCTTTGGGTCTTATGAGAAAGCCAGGGAAGGGTTTCGG---------AAAAGA--GGGGCGGATGCAGGTGAGGGCAGGGA----GAGGAGGCGGTCCCCACGTGTGTCCGGGAGAGGATCAGGATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47088393 1917 +  51301725 GGA-------------------------------TGAGAGGATGGGGTGGGAAGGGTG-GGAGGCCAG-ACCGCAGAGTTGCTGAGTCAGCAGAGAGGAACTTGGCAGCTccctgtgtgccaggtgctgtccTGAGTACTC---GGGTGTGGGTATAGATAACGCAGGCACAGCACTGGTCCCTGCAGAGCTTCTGGAGTTGGGCAGGCCTTGAATgtcagtctaggga-cttg---------gtcaTTAGCCTTGGGGCTATGGGGAG-CCATAGGAGGTTTCAGACGGACGGTCAGTTCCAGGGC-AGGTAGGGTCAAGTCTAGActggtgtggag-----------ggagagggatTGGAG----GCAGGAACACAAGTTCAGG-GATGTCTGCAGATGTCAGCCTGTCGCCTGCTTTACTCT----------------------------------------------------------------------------------TCAACCCCTCCTTCCTGACCCCCTCCAGCCTCGTCCTCCGCCTCCTCCAGCTGCAGGATCTGGGAGGCAGACGTCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCTTCCCAGCCTCATCCTCCGTCTCCCCCAGCTGTGGGACCCGAGACGGGGTAGGGATTTAGATCCTCA--CACCCATGCCACTCCGTGTCCTCACAGTGATGGGACCGGTGGAGGCAGCGCCTGAATACCGTGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTAAGTGAGTGCT-GGGGGGAG--GCGGAGACTGCCCTCTGTGACGCCCCTCatgcccc--ctccc------------------------------------ttcccca---------------------cggGCCTTTCCCAGGGTCCTGCCGCTGAGCC------CAA-----GCTCAGATGGAGGTTCACCTGCTGTAACGGAGTGGTGTAAGTAAGAAGGAAGTGCGTTCTCC-CTCG--------------------------------------------CGTATGAGTCTGAGCGAGCA-CTCGGGGATGGCGTGGCCGCTTGGCTGCCTGTAAGGCCCCAGCCCTTTCCATTTTGTTGGTCGGCCACCTGCCTCGTGGTGCGAGGGGACTGCCCCACGTCCAGCCGTCGCctctgcattcccaccagca----------------aggcact--tctttttttttaagaaca-------------------tg------------------tCACTG-----CAGCTCACATTTTACAGAC-----CAGAACTAATTCCCCTGGTCACACCTAGCGGTAAGGGCGGCTGAGAAATGGAGCCTGTATGCT-GGTGCCCGTATGCCAGGCTACAAGCCAGGGCTTCAGTTACTAAAGGAAGAAG--GGGACGTGGGTGTTAGGGCCAACCAGCAGAGTCTGCCTCCCGTCTCACCTGACGCCCGCC------GTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCGAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGAGCAGAGGAG----------------GAGGGGTG-----------------------------CTTCTG-------CTGGTGTGAAGGTGCAGGCAGGGCTCA---------------------CTCTCGGACCCGCCCCCAGAGGCCTCGG-------------------GGTCTGGAGATGAAGGAGAGGAGCGGACGGAGGCTCAGTGGC-CTGCTCTGCCCAGCGTGGGAGGGACGGAGCCTGGATGGGACTT----------TCTCGGGGCTCCCCTCCTACCCC-------------------------AGTCTCCCGAGAGGGCTTCTCCGCTG-----GCCTGA----------------------------CCCGCGCTGCTTCCGCTGTGGTCGGAGCCGGTGGCATT-GGAGTTGACATCCGAAGGTTGGCACAGGG-CAGGCACGCGGAGATTTGGGGGAGACAGATGTCTTAAGTATGGAGAGCCTGAGGGAGCAAGCGGGGAGGAAGCGAGGCGGGGAAGGA-GGGCACGCGGGAGAGGTCGGATCACACTGAGCCTTTGGGTCTCATGAGAAAGCCAAAGC---------------GGGGAGGAAGTGAGGCGGGGAAGGAGGGCACGC-GGGAGAGGTCGGATC--------ACACTGAG-CCTTTGGGTCTCATGAGAAAGCAAAGGAAGGGTTTCGG---------AAAAGA--GGGGCGGATGCACgtgagggcaggga----gaggaggcgGTCCCCACGTGTGTCCGGGAAAGGATTAGGATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46796265 1832 +  50890351 gga-------------------------------tgagaggatggggtgggaagggcg-ggaggccag-accgcagagTTGCTGAGTCGGCAGAGAGGAactgggcagctccctgtgtgccaggtgctgtcctgagtactc---gggtact----cagataacgcaggcgcagcactggtccctgcAGAGCTTCTGGAGTTGGGCAGGCCTTGAATGTCAGTCTAGGGA-CTTG---------GTCATTAGCCTTGGGGCTATGGGGAG-CTGTAGGAGGTTTCAGACGGACGGTCAGTTCCAGGGC-AGATAGGGTCAAGTCTAGACTGGTGTGGAG-----------GGAGAGGGATTGGAG----GCAGGAACACAAGTTCAGG-GATGTCTGCAGATGTCAGCCTGTTGCCTGCTTTACTCT-----------------------------------------TCAACCcctccttcctgaccccctccagcctcgtcctccgcc-----------------------------------------tcctccAGCTGTAGGATCTGGGAGGCAGATGTCAGCCTGT-CCCTGGTTTACTCTTCAG-CCCCTCCTTCCTGA-CCCTTCCCAGCCTCATCCTCTGTCTCCCCCAGCTGTGGGACCTGAGAAGGGGTAGGGATTTAGATCCTCA--CACCCATGCCACTCCGTGTCCTCACAGTGATGGGACCGGTGGAGGCAGCGCCTGAATACCGCGTCATCGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCT-GGGGGCAG--GCGGAGACAGCCCCCTGTGACGCCCCTCATGCCCC--CTCCC------------------------------------TTCCCCA---------------------CGGGCCTTTCCCAGGGTCCTGCCACTGAGCC------CAA-----GCTCAGATCGAGGTTCACCTGCTGTAACGGagtggtgtgagtaagaaggaagtgtgttcttc-ctcg--------------------------------------------cgtatgagtctaagcgagca-ctcggggatggtgtggctgcttggctgcctgtaaggccccagctctttccatcttgttggtcagccacctgcctcacggtgcgaggggactgccccacgtccagccgtcgcctctgcattcccaccagca----------------aggcact--tc-ttttttttaagaaca-------------------tg------------------tcactg-----cagctcacattttacagac-----cagaactaattcccctggtcacacctagcggtaagggcggctgagaaatggagcctgtatgct-ggtgcccgtgtgccgggctacaagccagggcttcagttactagaggaagaag--gggacgtgggtgttagggccaaccagcagagtctgccTCCTGTCTCACCTGACACCCGCC-----TGTCCCGTTTACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCGAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGAGCAGAGAAG----------------GAGGGGTG-----------------------------CTTCTG-------CTGGTGTGAAGGTGCAGGCAGGGCTCA---------------------CTCTCGGACCCGCCCCCAGAGGCCTCGG-------------------GGTCTGGAGATGAAGGATAGGAGTGGACGGAGGCTCAGTGGC-CTGCTCTGCCCAGAGTGGGAGGGACGGAGCCTGGATGGGACTT----------TCTCAGGCCTCCCCTCGTACCCT-------------------------AGTCTCCTGAGAGGGTTTCCCCGCTG-----GCCTGA----------------------------CCCGCGCTGCTTCCCCTGTGGTCGGAGCCAATGGCATTGGGAGTTGACATCCGAAGGTTGACACAGGA-CAGGCACGTGGAGATTTGGGGGAGAGAGATGTCTTAAGTATGGAGAGTCTGA---------------------------------GA-GGGAAC-------------------------------------------------AAGT---------------GGGGAGGAAGTGAGGCGGGGAAGGAGGGGACGT-GGAAGAGGTGGGATC--------ACTCTGAG-CCTTTGGGTCTTATGAGAAAGCCAAGGAAGGGTTTTGG---------AAAAGA--GGGGCGGATACACGTGAGGGCAGGGA----GAGGAGGCGGTCCCCACGTGTGTCCGGGAAAGGATTAGGATG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45369338 1679 +  49145316 ggagtggaatacaatgg-ggtat---------gatgagagggaggggtgggaagtgta--gaagctag-accgCAGAGTTGCTGAGtcagcagacaggaactggacagctccctgtatgccaggtgctcttctgggtactc---gggtgtgggtgtagaccatgcaggcacagcactggtccctgcagaacttccggtgttggggacaccatgactatcagtctgggaagcttggtcatgagtgtcatgagccttagggctgtgggaag-ccataggaggttcaa-------------ttccagggt-aga-ggggtcaagtctagactggtctggag-----------ggagagagatgggag----GCAGGGACACAAGATCAGG-GAC-TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGACATCAGCCTGTCCCCCGGTTTACTCTTCAGCCCCCCCCTTCCTGACCCCCTCGAAACCTTGTCCTCCATCTCCCCCAGCTTTGGGACCCAGGATAGGGTAGGGATTTAGATCCTCA--CACT----CCGCTCTGTGTCCTCACAGTGATGGGGCCAGTGGAGGCAGCCCCTGAATACCGCGTCATTGTGGATGCCAACAACCTGACCGTGGAGATCGAAAACGAGCTGAGTGAGTGCT-GGGGGGAG--GCGGACGCAGCTCCGTGTGACA-CCCTCATGCCCA-TCTCCC------------------------------------TTCCCCA---------------------CTGGCCTTTCCCAGGGTCCTGCCCCTGAGCC------CAT-----GCTCAAATCCAGGTCCACCTGCTGtaac--agtggtttgaagaagaaggaagtttgttctcctctta--------------------------------------------tgtgtgagtctgagcgagca-cttgggggtggtgt--------------------ggccccagctctttccatcttgttgttcagccac-tggttcacggtgcaaggtggctgtcccacctccagccatcacctctgcatttccaccagca----------------agGCGCT--TC-TTATTCTTAAGAACG-------------------TG------------------TCACCACAGCTCAGCTCACATCTTACAGAG-----CAGAACAAATTCCCGTGGTCATAC-------------------------------------------------------------------------------GTAAAGGAAGAAG--GGGAAATGGGTGTTAGGG-CAACCAGCAGACTCTACCTCCTGTCTTACCCAAGA-CCGCC-----TGTCCTGTCCACCCTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCGAAGAGATTCCCTGAACTGGAGTCCTTGGTCCCCAATGCACTGGATTACATCCGCACGGTCAAGGTGAGCGCCAAGAAG----------------GCGGGGTGCTTGGGAAGAACTGTGGCTTCTTGCCCGACTTCTG-------CCGGTGTGAAGGGGCAGGTGGGGCTCA---------------------CTCTTGAACCTGCTCCCAGAGGCCTCGG-------------------GGTCTGGAGATGATGGA-AGGAGTGGACGGTGGCTTAGCGGC-CTGCTCTGCCCAGCGTGGGAGGGACAGAAGCTGGACGGGACTT----------CCTCAGGGCTCCCCTCCTGCCCC-------------------------GGTCTCCCAAGAGGGCTTCCCCTCTG-----GCCTGA----------------------------CCCGTGCTGCTCCCACTGTGGTTAgagccggcggcatt-ggagttgagatccaaaggttgacatggga-cgggcacgcggagatttgggggagagagacgtt-taagtgcagagagCCTGA---------------------------------GA-GGGAAC-------------------------------------------------AAGC---------------TGGGAGGGAGTGAGGTGGGGAAG--AGGGAAGT-GGAAGAGGTCGGATT--------GCGTTGGG-CCTCTGGGTCTTATGAGAGATCCAAGGAAGGGTTTAGG---------GAAAGA--GGGGCAGGTGCACGTGA-GGCAGGGA----GAGGAGGAGGTCCCCACACATGTCCAGGGAAAGATTAGGATG
i calJac3.chr22             C 0 I 1201
s mm10.chr7                   3632211 1622 + 145441459 GGAGTGAAATAGCCTTG-AGTGCCCGGTGGCGGCTGGGAGGATGGAGCAGAAAAGCAG-AAAGGATAATGCTGTAGAGCCAACGAGTCACCGGATCTCACTGAAGGGACTC---------------CTGTGCTGTGTGCACCAAGGTTGCAGGTGTGGGGAACGTGGAC---------------------CTCCATCTGTATGGGAGACCTTGAGTGCCAGTCTGAGGATCTTG---------CTCGCTAGCCTCAAGGCTTTGGGAAG-CTATAGGAAGGTTTA------------ATTTTGGAGCAAGATGAGGTCAAGACCAGATTGACCCAGAGGATAGACTGCAGGAGAAAGATGAGAA----GCAGGAGTAAGGCTCCTGGAGAGGAATATAAGCCTCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCTTCAGCCCTT-ATGTAGC---CCCCTCAG-CCCCTCCTTTCTGA-TTCCATCCAGCCTCCACCTCAGT---CCCCAGCTTCGTTCCT------------------------CCCC--CATCCATAT--CCCTTCTTCTTTGTAGTGATGGGACCAGTGGAGGCAGCTCCTGAGTACCGAGTCATTGTGGATGCCAACAACCTGACTGTGGAGATAGAAAATGAGCTGAGTGAGTGAT-GGGAAGGGCTATGGAGACACCAGTATCCTGTGCTCTTCACTCTTT--CGTTA------------------------------------TGACCCAAAGGGAAGAACAGGCATGAACCTGGACCTCTTTTGTTTGCCTTTCTTGGGCA------AAAATATTGCCCTGATT-AGGTTCATCTTCTATAACAGAGTAACTAACATA------AATTGTACTCTCCTCCAT--------------------------------------------CATAAAAGTCTGAATAAGCAGGGCAGGTCTCGAGTCATCCTTTGACCCCCT-TGAGCAGCCAGGCTTTGCCACCTCGT---------ACGTGCTCCAGGATG--------ATGCC--------------CACCTCTGCATCCCTACCAGCAAATGTGGAGGGAAGATAGGCCATAGTT-GTTTCCTTAAGGCCACGATCTGGAAGTTGAAAATTG------------------TCACTT----TCAGTTCATATTTTGTAGACTTTTGTAGAACAAACTCCCAC--CTGCACATAGCATTGGAGACAGCTAGGAAATTAGAATGATTTGGG-GTTG-------------------------------GTTACTAGA----GAGG--TGGAAGTAGGTATTGGGGATAG-CAGCAGAGTCTGCCTCCC-CCTCAGTAGACACCTGTCCTTGATGTCCCATT-----TAGACATTATCCACAAGTTCATCCGGGATAAATACTCAAAGAGATTCCCTGAGCTAGAATCCTTGGTGCCCAATGCTCTGGATTACATCCGCACAGTCAAGGTGAGTGGAGAGAAG----------------TCTGG--------------------------------CTT--------------------GGGAAGAACTGGGGCCA---------------------CT---AGACCAT------GAAACCTCA--------------------AGTCTAGAAATAATGGAGAGTCATGAATGG-GGCTCAGTGGT-------------------GAGGGACAGATACTGGAATGGATGTGTCATGCACATCTCTTGCTTCCTTCCTCCCCTT-------------------------GGTTTCATGGGAGGA--TAACCACTG-----ACCTGG----------------------------CCCTTAC--CTCTGGCTGCAGTTGGAGCAGGTGTCCTT-TGAGCTGGCA----GAGGCCACCGCTGAA-----------------------------------TAAGAGCTAAGACCCTGC---------------------------------GT-GGGAAC-------------------------------------------------AAGC---------------AAGGATGAAGTCAGAAGGGGCAGGGAGGGAAGCTTGGAGAGGTCAGAAA--------GGGCAGAGAACATTAGATGT---------------GGAAGGTGTTGGCTTCTCTACAAGGGATTGGAGCGAGTGGAAGTGA-------AA----GAGCAGGGG--TCCTGCCTCTGTCCAGGA---GATCAGGATG
i mm10.chr7                 I 1141 C 0
s canFam3.chr1               19591870 1835 - 122678785 ggtgtgtgataagatggtggtgt---------cttgaaaaagtggggcttggacggtgcaaaggccag-actgtggagTTGGAGAGtcagcaggtacctacagagcagtgccc-gtgcgccaggcactattgtgggcatct---gggcactgg------------gggtgcagAACTTGTCTTCATAGTGTTTC------------------------CCGTCTGGGGAGCTTG---------CACCTCGGCCTCAGTGGTGTGGGGATCCCCTAAGGGGTT--------------AGTTCCGGGGCGACACGCCGTGGTGTCTAGACTGGCCTGGAG-----------AGAGAGAAATGGGAGGTGTGCCAGCGTGGAAACCCTGG-AAAACCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAC---------C-TCCAGGTTTTCTTATTAG------CCTCCCAGC-TCCCTTCCAACTACACCTCCTGACTCCCCTGGCTGTGGGAGCC-----------------TAGACACTCACCCACCAAGGCTGCTTCTCATCTTCACAGTGATGGGACCTGTTGAGGCGGCCCCTGAATACCGAGTCATCGTGGATGCTAACAACCTGACCGTGGAGATCGAGAATGAGCTGAGTGAGTGGC--AGGAAGG--GCAGAGATGGCCCTGCCTGCTGTCCCTTCCACTCT-CCTCCCATCCACAAGGAGAGGACAGGCAGGACCCTGGTTACTTTCCCCA---------------------CTGGCCTTCCCCAAGATCCTGCCCCAGACTCCTCATACTA-----GCTGTAGTCCAGATTCAGCTGCCataac--agcagcttaaa-aaaaagaaagtgtgcttttctccga--------------------------------------------tgtgagaatctggatgaggagtccagccctggagt------------------------caggctctttctgtc---ttgacctgccacctgtgtcagggcacaaagtgactgtc-cacctccagtcatcacctccacatccccaccagcagaacagggaagaaaa-agagggc--ac-agttctttaaggggg-------------------tgacctggaaattgcatgcatcactt-----catatgatatcctgtagac-----cagaactaacttgcagggccacacctggcagcaggggagt-----------agcgtttttgctgggtacccacgaacccagcta-aattcaggggttcatttatttaa-aaagaagcagggagatgggtgttgcggacagccagtggagtctgccTGCCCCCTTATCAG----CTACC-----TGTTCTCCCTACCTTAGACATCATCCATAAGTTCATCCGGGATAAGTACTCAAAGCGCTTCCCTGAACTGGAGTCTCTGGTCCCTAATGCACTGGATTACATCCGCACGGTCAAGGTGAGTGGACAGAGGTGGGGACTCAGGAACAGTGGAGTT-----------------------------CTCTTGACTACCCCTCATGTGAAGGGG--AGCAGGGAGCAGGTGAATGACCTGGAATGTGGTTAGTGAGGCTGCTCC---AGGCCTCAGCTGCCTTTCTCGTTATTGAGGCCTGCAGATACTGGCAGGGGCCGAGTGGTGGCTCAGCTGCTCCAGGCTCCCCAGCAAGAAAGGGATGAAGCCTGGAAAGGATGT----------TCTCATGGCTCCTCTGCCACCCATCCAATCCTGCTGCTTCCTTGGATGGGTCTCCCAGGAAGGGCTGGGAGCTGCTTGAGGCTGAGGGAGTAAGGAGGGAGATGAGGGGGTCTCTCATGC--CACCAACAGTGGTtggagcaggtggcatt--gagtcgatatctaaaggttgatgcaggggcagccatgcagagatatgggggggaaagcCT---GGAGTACCAAGAACGGGA---------------------------------GATAATGAC-------------------------------------------------AAGCTGTGGTATGTTCAGAAGGGAGGAAGTGAG-----------GGCAAAGT-CAATGAGGTTGCATCCCCTGTGACCCCCAAG-GCTTTGGGCCTTCTGGAAAAGCC------------------------ATGAGA--GGGCCAGATACTAGTGAGAGTGGGGACACCGGTGAGGAGATTCCTGTGTGCTGTCAGGAGGAGGTGAGGATG
i canFam3.chr1              C 0 C 0

a score=34799.000000
s hg38.chr19_GL949751v2_alt     97608 9 +   1002683 GCGGTGGGG
s panTro4.chr19              59031117 9 +  63644993 GCGGTGGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909220 9 +  60714840 GCGGTGGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102672420 9 - 106955855 GCGGTGGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59956595 9 +  64156825 GTGGTGGGG
i rheMac3.chr19             C 0 I 1
s macFas5.chr19              54960442 9 +  59248254 GTGGTGGGG
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47090310 9 +  51301725 GTGGTGGGG
i papAnu2.chr19             C 0 I 309
s chlSab2.chr6               46798097 9 +  50890351 GTGGTGGGG
i chlSab2.chr6              C 0 I 78
s calJac3.chr22              45372218 9 +  49145316 GTGGTGGGG
i calJac3.chr22             I 1201 I 1
s mm10.chr7                   3633833 9 + 145441459 GTGGCACAG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19593705 9 - 122678785 GTGCAGGGG
i canFam3.chr1              C 0 C 0

a score=294018.000000
s hg38.chr19_GL949751v2_alt     97617 142 +   1002683 AAGCCCCTGCAGGGA--AGCGAGGCCG-CGGATTTGCA-CTCCGACTTGACGCAGGCCAGAGGCTTGTGAGGCCACA-GTCTTTC-CAGACGCCACTCTGCCCGGGCTCCGTTTCCAGGTCAGCGAAAGCAGGGCAGATGGTGTGGAT
s panTro4.chr19              59031126 142 +  63644993 AAGCCCCTGCAGGGA--AGCGAGGCCG-CGGATTTGCA-CTCCGACTTGATGCGGGCCAGGGGCTTGTGAGGCCATG-GTCTTTC-CAGACGCCACTCTGCCCGGGCTCCATTTCCAGGTCAGCGAAAGCAGGGCAGATGGTGTGGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909229 143 +  60714840 AAGCCCCTGCAGGGA--AGCGAGGCTG-AGGATTCACGCCTCCGACTTGATGCGGGCCAGAGGCTTGTGAGGCCGCG-GTCTTTC-CAGATGCCGCTCTGCCCAGGCTCCGTTTCAGGGTCAGCGAAAGCAGGGCAGATGGTGTGGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102672429 142 - 106955855 AAGCCCCTGCAGGGA--AGCGAGGCCG-CGGATTTGCC-CTCCGACTTGACGCGGGCCAGAGGCTTGTGAGGCCGCG-GTCTTTC-CAGACGCCGCTCTGCCCGGGCTCCGTATCCGGGTCATTGAAAGCAGGGCAGACAGTGTGGAT
i nomLeu3.chr10             C 0 I 297
s rheMac3.chr19              59956605 121 +  64156825 AAGCCCCCGCAGGGA--AGCGAGGCCG-CGGGTTTGTG-CTCCGACTCGACACAGG-CAGAGGCTTGTGAGGCCGCG-GTCTTCC-CAGACGCTGCTCTGCCCAGGTTCCGTTTCC---------AAAGCAGAGCAG-----------
i rheMac3.chr19             I 1 C 0
s macFas5.chr19              54960452 121 +  59248254 AAGCCCCCGCAGGGA--AGCGAGGCCG-CGGGTTTGTG-CTCCGACTTGACACAGG-CAGAGGCTTGTGAGGCCGCG-GTCTTCC-CAGACGCTGCTCTGCCCAGGTTCCGTTTCC---------AAAGCAGAGCAG-----------
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47090628 121 +  51301725 AAGACCCTGCAGGGA--AGCGAGGCCG-CGGGTTTGTG-CTCCGACTTGACACAGG-CAGAGGCTTGTGAGGCCGCA-GTCTTCC-CAGACGCTGCTCTGCCCAGGTTCCGCTTCC---------AAAGCAGAGCAG-----------
i papAnu2.chr19             I 309 C 0
s chlSab2.chr6               46798184 121 +  50890351 AAACCCCTGCAGGGA--AGCGAGTCTG-CGGGTTTGTG-CTCCGACTTGACACAGG-CAGAGGCTTGTGAGGCCGCG-GTCTTCC-CAGATGCTGCTCTGCCCAGGTTCCGTTTCC---------AAAGCAGAGCAG-----------
i chlSab2.chr6              I 78 C 0
s calJac3.chr22              45372228 132 +  49145316 AAGCCCCTGCAGGGA--AGTGAGGCCACCGGATCAGTG-CTCCCACTTGTCATGGGCCAGAGGCTTGTGAGGCCTCG-GTC-TCC-CAGATGCCACTGTGCCCAGGCTCCATTTCCAGGTCAGCCAAAGCAGAGCAGA----------
i calJac3.chr22             I 1 C 0
s mm10.chr7                   3633842 120 + 145441459 -------------GA--ATTGTGTCTG-TGGAATAAAG-TGCGCTTTTGAC---GGCC-----TCTTTAGTGCAGCATGTCTTCCTTGGAGGCTGCTTTG-CCAGCTTGTACTTCTGCATCCGT-AGAGCAGAGCAGGCACACTGAT-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19593714 109 - 122678785 GCATCCATGCAGGAAGCAGTGTGGTCA-AAG--TTGCA-TTTTGAGTTGCTGCAGA-CAGTGG---------------GTCTGCC-T-----------------GGTTCTGGTTCTAGACCAGC-AGTGCAGGAGCAACGGTACCGAT
i canFam3.chr1              C 0 C 0

a score=1096583.000000
s hg38.chr19_GL949751v2_alt     97759 325 +   1002683 GCTTGACGTGGTGGAGGCAGGAATGGTGTGGATGCTTCAGGCGGTGGAGGCAGGAG-AGGCCCCCAGTGCAGAG---------------ACCCTGACTGTCCCAGTGTCCCTAAGAAGAGACCTGAGGAGGTGCTG-AGCAAGAGAGGTTC-TCGAGCCTTCCT--GAGTTCCCGAGCCTCCCCTATCTTCTCTGCTCGCCCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAATGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT--------------------------------------TCGAGGGAGGC-----GCCGGGCC----C-T
s panTro4.chr19              59031268 325 +  63644993 GCTTGAGGCGGTGGAGGCAGGAATGGTGTGGATGCTTCAGGCGGTGGAGGCAGGAG-AGGCCCCCAGTGCAGAG---------------ACCCTGACTGTCCCAGTGTCCCCAAGAAGAGACCTGAGGAGGTGCTG-AGCAAGAGAGGTTC-TCGAGCCTTCCT--GAGTTCCCGAGCCTCCCCTATCTTCTCTGCTCGCCCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAATGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT--------------------------------------GCGAGGGAGGC-----GCCGGGCC----C-T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909372 329 +  60714840 GCTTGAGGCGGTGGAGGCAGGAACGGTGTGGATGCTTGAGGTGGTGGAGGCAGGAG-AGGTCCCCAGTGCAGAG---------------ACCCTGACTGTCCCAGTGTCGCCAAGAAGAGACCCGAGGAGGTGCTG-AGCAAGAGAGGTTC-TCGAGCCTTCCT--GAGTTCCCAAGCCTCCCCTGTCTTCTCTGCTCGCCCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAATGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT--------------------------------------GTGAGGGAGGC-----GCCGGGCCCGGGC-T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102672868 328 - 106955855 GCGTGAGGCGGTGGAGGCAGGAACCGTGTGGACGCTTGGGGCGGTGGAGGCAGGAG-AGGCCCCCAGTGCAGAG---------------ACCCTGACTGTCCCAGTGTCCCCAAGAAGAGACCTGAGGAGGTGCTG-AGCAAGAGAGGTTC-TCCAGCCTCCCT--GAGTCCCCGAGCCTCCCC-GTCTTCTCTGCTCACCCCTAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAATGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCACT--------------------------------------GCGAGGGAGGT-----GCCGGGCCCGGGC-T
i nomLeu3.chr10             I 297 C 0
s rheMac3.chr19              59956726 304 +  64156825 ----------------------ACGATGTGGATGCTTCAGGCGGTGGAGGCAGGAG-AGGCCCCCAGTGTAGAG---------------ACCCTGACTTTCCCAGTGTCCCCGAGAAGAGACCCGAGTAGGTGCAG-GGCCAGAGAGGCTC-TGAAGCCTTCCT--GAGTTCCTGAGCCTCCC--GTCTTCTCTGCTCGCGCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAACGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT---------------------------------------GGAGGGAGGC-----GCCGGGCCCGGGC-C
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54960573 306 +  59248254 ----------------------ACGGTGCGGATGCTTCAGGCGGTGGAGGCAGGAG-AGGCCCCCAGTGTAGAG---------------ACCCTGACTTTCCCAGTGTCCCCGAGAAGAGACCCGAGTAGGTGCAG-AGCCAGAGAGGCTC-TCAAGCCTTCCT--GAGTTCCTGAGCCTCCCCTGTCTTCTCTGCTCGCGCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAACGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT---------------------------------------GGAGGGAGGC-----GCTGGGCCCGGGC-C
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47090749 307 +  51301725 ----------------------ACGGTGTGGATGCTTCAGGcggtggaggcaggag-aggccCCCAGTGTGGAG---------------ACCCTGACTTTCCCAGTGTCCCCGAGAAGAGACCTGAGTAGGTGCAG-AGCCAGAGAGGTTC-TCAAGCCTTCCT--GAGTTCCTGAGCCTCCCCTGTCTTCTCTGCTCGCGCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAACGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT--------------------------------------GGGAGGGAGGC-----GCCGGGCCCAGGC-C
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46798305 306 +  50890351 ----------------------ACAGTGTGGTTGCTTCAGGCAGTGGAGGCAGGAG-AGGCCCCCAGTGTAGAG---------------ACCCTGACTTTCCCAGTGTCCCCAAGAAGAGACCCGAGTAGGTGCAG-AGCCAGAGAGGTTC-TCAAGCCTTCCT--GAGTTCCTGAGCCTCCCCTGTCTTCTCTGCTCGCCCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAATGCCACCATCATGGTCGTCAGCGTCACCGCCTCCACCACCCAGGGGTATGTCCGCT---------------------------------------GGAGGGAGGC-----GCCGGGCCCGGGC-C
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45372360 314 +  49145316 -----------------------GAGTGTGGATGCTTCGGGTGGCAGAGGCAGGAG-AGGCCCCCAGTGCAGAGACCCTCAGTGTAGACACCCTGACTTTCCCAGTGTCCCCAAGACAAGACCTGAATAGGTGCTG-AGCA--AGAGGTTC-TCCAGCCCTCCT--GAG--CCCAAGCCTCCCT-GTC-TCTCTGCTCGCCCCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAACAATGAGAACCTGCAGCAGATCCTCACCAATGCCACCATCATGGTCGTCAGTGTCACTGCCTCCACCACTCAGGGGTATGTCCGCT--------------------------------------GCGAGGGAGG------ACTGGGCCCGGGC-T
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3633962 348 + 145441459 ---------GCTTTAGGCAGGGAGGTTGTAAA-------AGTGTAAAAGGAAAGAG-AGGCCTCCAGTGTATGG---------------ACCTTAGCTTTCCCAGCTTCCTCAAGGGGAGACCTCTGTTGGTGTTGTAGCAAAAGAGGGTCTTTTGGGCTTACTACAAATTCTC---CCTCCCCTTCCTAC----------CCCAGGAGCTGGGCAACAGCCTGGATAAGTGCAAGAACAATGAGAACCTCCAGCAGATCCTGACCAATGCTACTATCATGGTTGTTAGTGTCACTGCCTCTACTACCCAGGGGTATGTATGCCAAACGGTAATGTGCCGCAAGCCTACCATAGGACAATTAACAGGAGAGACAGAATGGAGGGCATGGTCAG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19593823 289 - 122678785 ------------------------GTTCTGAGTGGTGAAGTCCTGGGAGCTGGGAGCAGGCAGCCTTCATCCAG---------------ACCCCAGATGTCCCC---------AGAAGAGACTTAACTAGGTGCAGGGGCAAGAGAGCTCC-TCAGGCCTTCCT--GAATCCCTGTGCCTCCCC-CTCTTGCCTTCTCACCTCCAGGAGCTGGGCAACAGCCTGGACAAGTGCAAGAATAACGAAAACCTACAGCAGATCCTAACCAACGCCACCATCATGGTCGTCAGCGTGACTGCCTCCACCACCCAGGGGTGCGTGCATA------------------------------------------GGGTGGG-----ACCATGCACT-----
i canFam3.chr1              C 0 I 1393

a score=114000.000000
s hg38.chr19_GL949751v2_alt     98084 43 +   1002683 AATGG----GATTGGGGATTA-GGCTGGAGCTACACACGCAGGTGTac
s panTro4.chr19              59031593 43 +  63644993 AATGG----GACTGGGGATTA-GGCTGGAGCTacacacacaggtgtac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909701 43 +  60714840 AATGG----GACTGGGGATTA-GGCTGGAGCTACATATGCAGGTGTGc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102673196 43 - 106955855 AATGG----GACTGGGAATTA-GGCTGGAGCTACACACGCAGGTGTGc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957030 43 +  64156825 AGTGG----GACTGGGGATTA-GGCTGAAGCTACCCACGCAGGTGGGc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54960879 43 +  59248254 AGTGG----GACTGGGGATTA-GGCTGAAGCTACCCACGCAGGTGGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091056 43 +  51301725 AGTGG----GACTGGGGATTA-GGCTGAAGCTACCCACGCAGGTgggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46798611 43 +  50890351 AGTGG----GACTGGGGATTA-GGCTGAAGCTACCCACGCAGGTGGGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45372674 40 +  49145316 AGGGG----GACTGCGGATTA---TTGAAG-TACACATGCAGATGTGC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3634310 41 + 145441459 AGTGGTGCTGACTGAGAATTATGGCC-------CCTAGACAGATGGAA
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19594112 1393 - 122678785 I

a score=91431.000000
s hg38.chr19_GL949751v2_alt     98127  67 +   1002683 acac----gcacacaca------------------------------------catacaca------catgcaca----caca----------cacacaGAACCGAGAGGGC---TGGGGCT---GGGCACAC
s panTro4.chr19              59031636  61 +  63644993 acac----gcacacaca------------------------------------catacaca------catgcaca----caca----------------GAACTGAGAGGGT---TGGGGCT---GGGCACAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909744  77 +  60714840 acat----gcacgcaca------------------------------------cacacacg------cacacaca----cacacacacacacacacacaGAACTGAGAGGGT---TGGGGCT---GGGCACAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102673239  57 - 106955855 acac----gcacacaca------------------------------------catacaca----------cgca----caca----------------GAACTGAGAGGGT---GGGGGCT---GGGCACAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957073  69 +  64156825 atac----acacacacg------------------------------------cacacaca------cacacacatgcgcaca----------cacacaGAACTGAGAGGGT---GGGTGCT---GGGCAC--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54960922  75 +  59248254 ATac----acacacacgcgca------------------------------cacacacaca------cacacacacgcgcaca----------cacacaGAACTGAGAGGGT---GGGTGCT---GGGCAC--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091099  49 +  51301725 atat----gcacacaca--------------------------------------------------------------caca----------cacacagaactgagagggt---gggggct---gggcac--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46798654  65 +  50890351 ATAT----Gcacacaca------------------------------------cacacgca------cacacaca----taca----------cacacaGAACTGAGAGGGT---GGGGACT---GGGCAC--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45372714 108 +  49145316 ACAC----ACACACACACATATGAGAGGGCGGGACTGGGGATTACTGAAGCTacacacgcagatgtgcacacaca----caca----------cacacataACTGAGAGGGC----GGGACT---GGGGATAC
i calJac3.chr22             C 0 I 1444
s mm10.chr7                   3634351  72 + 145441459 TTTTTATGATAGTCCCA------------------------------------GAACTAAA------CAAACACA----CATA----------CATACACAGCTGAGACAGTAGATGGGGCT---GACCAC--
i mm10.chr7                 C 0 I 41
s canFam3.chr1               19595505  58 - 122678785 ACGT----GCACATATG------------------------------------TGTACAGA------CGTGCACA----CACC------------------GCTAGGAGGAC---ACGGGCTCTCATGC----
i canFam3.chr1              I 1393 C 0

a score=456944.000000
s hg38.chr19_GL949751v2_alt     98194 149 +   1002683 CAGGCAGGCG-----------------------------------------------------------------------GGAGATC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCACCCGCCCC----TGCAGGCAGCAGCTGTCggaggaggagctggagcggctggaggaggcctgcgacatggcgctggagctgAACGCCTCCAAGCACCGCATCTACGAGTATGTGGAGTCC
s panTro4.chr19              59031697 149 +  63644993 CAGGCAGGCG-----------------------------------------------------------------------GGAGACC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCATCCGCCCC----TGCAGGCAGCAGCTGTCGGAGGAGGAGCTGGAGCGGCTGGAGGAGGCCTGTGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909821 115 +  60714840 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCCC----TGCAGGCAGCAGCTGTCGGAGGAGGAGCTGGAGCGGCTGGAGGAAGCCTGCGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102673296 149 - 106955855 CAGGCAGGCG-----------------------------------------------------------------------GGAGACC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCACCTGCCCC----TGCAGGCAGCAGCTGTCGGAGGAGGAGCTGGAGCGGCTGGAGGAGGCCTGCGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957142 149 +  64156825 CAAGCAGGCG-----------------------------------------------------------------------GGAGACC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCACCCGCCCC----TGCAGGCAGCAGCTGTCGGAGGAGGAGCTGGAGCGGCTGGAGGAGGCCTGTGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54960997 149 +  59248254 CAAGCAGGCG-----------------------------------------------------------------------GGAGACC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCACCCGCCCC----TGCAGGCAGCAGCTGTCggaggaggagctggagcggctggaggaggcctgtgacatggcgctggagctgAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091148 149 +  51301725 CAGGCAGGCG-----------------------------------------------------------------------GGAGACC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCACCCGCCCC----TGCAGGCAGCAGCTGTCGGAGGAGGAGCTGGAGCGGCTGGAGGAGGCCTGTGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46798719 149 +  50890351 CAGGCAGGCG-----------------------------------------------------------------------GGAGACC------------CAGGAG---------------------------------------------------------------------------------GCTGGG---------------CCCACCTGCCCC----TGCAGGCAGCAGCTGTCggaggaggagctggagcggctggaggaggcctgtgacatggcgctggagctgAACGCCTCCAAGCACCGCATCTACGAGTACGTGGAGTCC
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3634464 331 + 145441459 tgggtaggagcaccgactgctcttctaaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaaggagatctgatgccctcttctggagtgtctgaagacagctacagtgtatttacatataataaataaatacatcttttaaaaaaaagaaaGAAATGTACCTAGCAAAGCTGGAGTCT-GCCCACAACCCTCACGTGCTCCACAATGTAGGCAGCAGCTGTCGGATGAGGAGCTAGAGCGGCTAGAGGAGGCCTGTGACATGGCACTGGAGCTGAATGCCTCCAAACACCGCATCTATGAGTATGTGGAGTCC
i mm10.chr7                 I 41 C 0
s canFam3.chr1               19595563 166 - 122678785 TGGTCAAGTG-----------------------------------------------------------------------GGATCCC------------CAGGAGGG-------------------------------------------------------------------------------GCAGGGGTCCAACCCAGTCACATCATTAACCAC----TGCAGGCAACAGCTGTCAGAGGAGGAGCTAGAGCGGCTGGAGGAGGCCTGTGACATGGCACTAGAGTTGAACGCCTCTAAGCACCGCATCTACGAATATGTGGAGTCT
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45372822 1444 +  49145316 I

a score=748965.000000
s hg38.chr19_GL949751v2_alt     98343 209 +   1002683 CGGATGTCCTTCATCGCACCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGGGTGAGTCCCC-GGGCTGGGTCCCATGGAG---CG--------GGGG--TCTGCTGACACTGTGACCTTGGGAAAGCTACAT-CCTTTTCTGTAGAATGGGGGCTT-TGGCACCTGGACCTCAGCACCCCGTCTC-CCTGGACATCACAGAGGTCAGCCA
s panTro4.chr19              59031846 209 +  63644993 CGGATGTCCTTCATCGCACCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGGGTGAGTCCCC-GGGCTGGGTCCCATGGAG---CG--------GGGG--TCTGCTGACACTGTGACCTTGGGAAGGCTACAT-CCTTTTCTGTAGAATGGGGGCTT-TGGCACCTGGACCTCAGCACCCCGTCTG-CCTGGACATCACAGAGGTCAGCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55909936 208 +  60714840 CGGATGTCCTTCATCGCGCCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGGGTGAGGCCCC-GGGCTGGGTCCCAAGGAG---CG--------GGGC--TCTGCTGACACTGTGACCTTGGGGAAGCTGCAT-CCTTTTCTGTAGAATGGGGGCTT-TGGCACCTGGG-CTCGGCACCCCGTCTC-CCTGGACGTCACAGAGGTCAGCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102673445 207 - 106955855 CGGATGTCCTTCATCGCGCCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGGGTGAGGCCCT-GGGCTGGGTCCCATGGAG---CG--------GGG---TCTGCTGA-ACTGTGACCCCGGGGAAGCTGCAT-CCTTTTCCGTAGAATGGGGGCTT-TGGCACCTGGGCCTCTGCACCTTGTCTC-CCTGGACATCACAGAGGTCAGCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957291 210 +  64156825 CGGATGTCCTTCATCGCGCCCAACCTCTCCATCATTATCGGGGCGTCCACGGCCGCCAAGATCATGGGTGAGGCCCT-GGGCTGGGTCCCATGGAG---CG--------GGAC--TCTGCTGACACTGTGATCTTGGGGAAGCTGCTTCCCTTTTCTGTAGAATGGGGACTT-TGGCACCTGGGCCTCAGCACCCCGTCTC-CCTGGACGTGACAGAGGTCAGCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54961146 210 +  59248254 CGGATGTCCTTCATCGCGCCCAACCTCTCCATCATTATCGGGGCGTCCACGGCCGCCAAGATCATGGGTGAGGCCCT-GGGCTGGGTCCCATGGAG---CG--------AGGC--TCTGCTGACACTGTGATCTGGGGGAAGCTGCTTCCCTTTTCTGTAGAATGGGGACTT-TGGCACCTGGGCCTCAGCACCCCGTCTC-CCTGGACATGACAGAGGTCAGCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091297 210 +  51301725 CGGATGTCCTTCATCGCGCCCAACCTCTCCATCATCATTGGGGCGTCCACGGCCGCCAAGATCATGGGTGAGGCCCC-GGGCTGGGTCCCGTGGAG---CG--------AGGC--TCTGCTGACACTGTGATCTGGGGGAAGCTGCTTCCCTTTTCTATAGAATGGGGACTT-TGGCACCTGGGCCTCAGCACCCCATCTC-CCTGGACATCACAGAGGTcagcca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46798868 210 +  50890351 CGGATGTCCTTCATCGCGCCCAACCTCTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGGGTGAGGCCCC-GGGCTGGGTCCCGTGGAG---TG--------GGGC--TCTGCTGACACTGTGATCTGGGGGAAGCTGCATCCCTTTTCTGTAGAATGGGGACTT-TGGCACCTGGGCCTCAGCACCCCGTCTC-CCTGGACATCACAGAGGTCAGCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45374266 219 +  49145316 CGAATCTCCTTCATATCGCCCAACCTGTCCATCATCATCGGGGCATCCAGGGCTGCCAAGATCATGGGTGAGGCCCCGGGGCTGGGTCCCATGGCG---GGGATGGGGAGGCG--TCTGCTGACACTGTGGCCTTGGGAAAGCTGCATCCCTTTTCTTTGGAGGGGGGGCTT-TGGCACCTAGGCCTCAGCACCTGGTCTC-CCTGGACATCACAGAGGTCAGCCA
i calJac3.chr22             I 1444 C 0
s mm10.chr7                   3634795 174 + 145441459 CGGATGTCCTTCATTGCACCCAACTTGTCCATCATCATTGGAGCATCCACAGCTGCCAAGATCATGGGTGAGGTCCC--AGCGGGGTCCCTTTGGC---AG--------AG----TCTGCTGATA----------GGTTAGGTTGCCT----------TGGAAAGTGGGGTT-TGGCCTATTG-----------TGTTGTC-CCCTGAAGT--CAGAGGTCAGCCA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19595729 213 - 122678785 CGGATGTCCTTCATCGCGCCCAACCTCTCCATCATCATTGGGGCATCCACAGCCGCTAAGATCATGGGTGAGGCCCT-G----GGGTGCGGTAGAGATATG--------GGGCCATCCTCGGACAGTGTGACCTTGAGGAAGCCACGTCCCTCCTCTACGGGACAGGACCCTACTCCCCCTCACCCTCATCCTGTCATCCCTCCTAGAGATCACAGAAGTCACCCA
i canFam3.chr1              C 0 I 1193

a score=48845.000000
s hg38.chr19_GL949751v2_alt     98552 10 +   1002683 GCCTGGCACA
s panTro4.chr19              59032055 10 +  63644993 GCCTGGCACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55910144 10 +  60714840 GCCTGGCACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102673652 10 - 106955855 GCCTGGCACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957501 10 +  64156825 GCCTGGCACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54961356 10 +  59248254 GCCTGGCACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091507 10 +  51301725 gcctggccca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46799078 10 +  50890351 GCCTGGCACA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45374485 10 +  49145316 GCCTGGCACA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3634969 10 + 145441459 GTTTGGCACA
i mm10.chr7                 C 0 I 1203
s canFam3.chr1               19597135 10 - 122678785 GCCTGGCACA
i canFam3.chr1              I 1193 C 0

a score=1206783.000000
s hg38.chr19_GL949751v2_alt     98562 410 +   1002683 CAGCAAAGCCTCGTCTGTGGGAAaaacactcacccacagctccttct-ccctcccctgtgc---------------cggaaacccagagatga-ccacacccaggccctgttgtcagggagctcctggtttggtgaaAATGGTTCCAAAACACAGCCATCCCTGGAACGGCGTTAGTGTGGCT----TAGCACAAACGTGGTGGTCAGCTTCCTGTTGGG-GGCCTCCTCCCTG--CACCCCCAGGCCAGCTGCCCTCCCTCTCTGAGCCTCCTTTGCATCTGCCCCTTGCGGAATGGGCCAGGTCG---CCCGCCTGGCAGGG-CCATCGAGGAATCCAACCAGAACTTCATGTAAAGGTGCCCAGCACACGTCGAGCCCCCAGGCAGATTTACTCACCCCCACCT-CTCTGCTTTCTTCTGAccgcccc----cccttcct
s panTro4.chr19              59032065 403 +  63644993 CAGTAAAGCCTCGTCTGTGGGAAAAACACTCCCCCACagctccttct-ccctcccctgtgc---------------cggaaacccagagatga-ccacacctaggccctgttgtcagggagctcctggtttggtgaaAATGGTTCCAAAACACAGACATCCCTGGAACGGCGTTAGTGTGGCT----TAGCACAAACGTGGTGGTCAGCTTCCTGTTGGG-GGCCTCCTCCCTG--CACCCCCAGGCC-------CTCCCTCTCTGAGCCTCCTTTGCATCTGCCCCTCACGGAATGGGCCAGGTCG---CCCGCCTGGCAGGG-CCATCGAGGAATCCAACCAGAACTTCATGTAAAGGTGCCCGGCACACGTCGAGCCCCCAGGCAGATTCACGCACccccacct-ccctgctttcttctgaccgcccc----cccttcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55910154 413 +  60714840 CAGCCAAGCCTTGTCTGTGGG-AAAGCACTCACCCACAGCCCCTTCT-CCCTCCCCTGTGC---------------TGGAAACCCAGAGAGGA-CCACACCCGGGCCCTGTTGTCAGAGAGCGCCTGGTTTGATGAAAATGGTTCCAAAACACAGACATCCCTGGAACAGGGGTAGTGTGGCT----TAGCACAAATGTGGTGATCAGCTTCCTGTTGAG-GGCCTCCTCCCTG--CACCCCCAGGGCAGCTGCCCTCCCTCTCTGAGCCTCCTTTGCATCTGCCCCTCGTGGAATGGGCCAGGTCG---CCCACCTGGCAGGG-CCACCGAGGAATCCAACCAGAACCTCATGTAAAGGTGCCTGGCACACGTCGAGCCCCCAGGCAGATTCACGCACccccacct-ccctgctttcttctgaccgcccctgctcccttcct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102673662 414 - 106955855 CAGCGAAGCCTTGTCTGTGGGAAAAACACTCACCCACAGCTCCTCCT-CCCTCCCCTGTGC---------------CGGAAACCCAGAGATGA-CCACACGCAGGCGCTGTTGTCAGGGAGCTCCTGGTTTGGTGAAAATGGTTCCAAAACACAGACATCCCTGGAACGCCATTCGTGTGGCT----TAGCACAAACGTGGTGGTCAGCTTCCTGTTGGA-GGCCTCCTCCCTG--CACCCCCAGGCCAGCTGCCCTCCCTCTCTGAGCCTCCTTTGCATCTGCCCCTCGCGAAATGGGCCAGGTCG---CCCGCCTGGCAGGG-CCACCGAGGAATCCAGCCAGAACCTCACGTAAAGGTGCCCAGCACACGTCGAGCCCCCAGGCAGATTCACGCACCCCCACCT-CCCTGCTTGCTTCTGAccgcccccgctcccttcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957511 401 +  64156825 CAGCAAAGCCTTGTC--TGGGAGaaacactcacccacagctcctcct-ccctcccctgtgc---------------cggaaagccagagatga-ccacacccaggccctgttgtcagggggctcctggtttggtgaaAATGGTTCCAAAACACAGACATCCCTGGAATGGGGGTAGTGTGGCT----TAGGACAAACGTGGTGGTCAGTTGCCTGTTGGG-GGCCTCCTCCCTG--CA-CCCCAGGCCAGCTGCCCTCCCTCTCTGAGCCTCCTTTGCGTCTGCCCCTCGCGGAATGGGCCAGGTCG---CCCGCCTGGCAGGG-CCACCGAGGAATCCAGCCAGAACCTCACGTAAAGGTGCTTGGCACATGTCGAGCCCCCAGGCAGATGTGCGCACCCCCGCCTCCCCCGCTTTCTTCTGACCGCCCC-----------T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54961366 401 +  59248254 CAGCAAAGCCTCGTC--TGGGAGaaacactcacccccagctcctcct-ccctcccctgtgc---------------cggaaagccagagatga-ccacacccaggccctgttgtcagggggctcctggtttggtgaaAATGGTTCCAAAACACAGACATCCCTGGAATGGGGGTAGTGTGGCT----TAGCACAAACGTGGTGGTCAGTTGCCTGTTGGG-GGCCTCCTCCCTG--CA-CCCCAGGCCAGCTGCCCTCCCTCTCTGAGCCTCCTTTGCATCTGCCCCTCGCGGAATGGGCCAGGTCG---CCCGCCTGGCAGGG-CCACCGAGGAATCCAGCCAGAACCTCACGTAAAGGTGCTTGGCACATGTCGAGCCCCCAGGCAGATGTGCGCACCCCCGCCTCCCCCGCTTTCTTCTGACCGCCCC-----------T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091517 401 +  51301725 cagcaaAGCCTCGTC--TGGGAGAAACACTCACCCACAGCTCGTCCT-CCCTCCCCTGTGC---------------CGGAAACCCGGAGATGA-CCACACCCAGGCCCTGTTGTCAGGGAGCTCCTGGTTTGGTGAAAATGGTTCCAAAACACAGACATCCCTGGAATGGGGGTAGTGTGGCT----TAGCACAAACGTGGTGGTCAGTTGCCTGTTGGG-Ggcctcctccctg--ca-ccccagGCCAGCTGccctccctctctgagcctcctttGCGTCTGCCCCTCGCGGAATGGGCCAGGTCA---CCCGCCTGGCAGGG-CCACCGAGGAATCCAGCTAGAACCTCATGTAAAGGTGCTTGGCACATGTCGAGCCCCCAGGCAGATGTGCGCACCCCCACCTCCCCCGCTTTCTTCTGACCGCCCC-----------T
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46799088 401 +  50890351 CAGCAAAGCCTCGTC--TGGGAGaaacactcacccacagctcctcct-ccctcccctgtgc---------------cagaaacccagagatga-ccacacccaggccctgttgtcagggagctcctggtttggtgaaAATGGTTCCAAAACACAGACATCCCTGGAATGGGGGTAGTGTGGCT----TAGCACACACGTGGTGGTCAGTTGCCTGTTGGG-GGCCTCCTCCCCG--CA-CCCCAGGCCAGCTGCCCTCCCTCTCTGAGCCTCCTCTGCGTCTGCCCCTCGCGGAATGGGCCAGGTCG---CCCGCCTGGCAGGG-CCACCGAGGAATCCAGCCAGAACCTCACGTAAAGGTGCTTGGCACGTGTCGAGCCCCCAGGCAGATTTGCGCACCCCCACCTCCCCCGCTTTCTTCTGACCGCCCC-----------T
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45374495 394 +  49145316 TAGCAAAGCCCTGTCCGTGGGAAAAACACTCACCTACAGCTCCTCCT-GCAG-CCCTCTGC---------------CAGAAACCCAGAGCTGA-CCACACCCAGGCC--GTTGTCAGGGAGCTTCTGGTTTGGTGAATATGGTT------CACAGACATCTCTGGAATGG-GGCAGTGTGGCCTATGTAGCACAAATGAGGTGGTTGGCTTCCTGTCTAG-TGCCTCCTCCCTG--CA-CCCCAGACCAGCTGCCCTCCCTTTCCCAGCCTCCTTTGCATCTGTCCCTCGTGGAATGAGCCAGGTCC---CCCTCCTGACAGGG-CCACTGAGGGGTCCAACCAGAGCTTCATGTAAAGGCGCCCGGCACACGGTGATCCCCCC-GCAGATTCGCGCACGCCCACCT-CTCCGCTTTCTTCTGACTGCTCC------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19597145 393 - 122678785 -AGCAGACCCCTGTCAGAGGTAGGCATTTTTACCTACAGCTCTTCCTCCCCTCCCCTGGGCCTGCAGATGCGCTCACGGGAACCCAGAGATGATTCACAT-TAGGCCCTGTCATCAGGGTGTCCCcagtatggtggtaactgttataaaaca------------gagcaggggctgtgtagct----ctg--cagacttgggggcaagtt-cctgttgggctgctgcctcactttccatcctcaggcaggtgatttcacctctctgagcctcctctgaatc--ctccttctgaaaggggacttatcaggccctcccaggcagagcccacccagaaattcaaccagaaactcacctaaaggcacaaagcattcggtgagcccccaaacaaatgT---------------CCTGTGTTCCTTCTGACCTGTTT------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3634979 1203 + 145441459 I

a score=1118082.000000
s hg38.chr19_GL949751v2_alt     98972 295 +   1002683 ccctccctcccaccGCAGGTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATCGTGCAGTCCCTGCCACCGGTGAGC----------------C---CACTGCGTCATGGCCCCTCCCCCGGCCCCCCTGGAGCCTTCCGCTG---------------TGCCCAGA---CAGCCTGAGC---AGCCA--CCCACCATCTG--GCCCAGCTGACGGTAGCACTCAGGAGCTGGGA--
s panTro4.chr19              59032468 295 +  63644993 ccctccctcccaccGCAGGTGTGGCCGGCGGCCTGACGAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATCGTGCAGTCCCTGCCACCGGTAAGC----------------C---CACCGCGTCACGGCCCCTCCCCCGGCCCCCCTGGAGCCTTCCGCTG---------------TGCCCAGA---CAGCCTGAGC---AGCCA--CCCACCATCTG--GCCCAGCTGACGGTAGCACTCAGGAGCTGGGC--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55910567 296 +  60714840 ccctccctcccaccGCAGGTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCAGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATCGTGCAGTCCCTGCCCCCGGTGAGC----------------C---CACCGCGTCACGGCCCCTCCCCCGGCCCCCCTGGAGCCTTCCGCTG---------------TGCCCAGA---CAGCCTGAGC---AGCCA-CCCCACCATCTG--GCCCAGCTGACGGTAGCACTCAGGAGCTGGGA--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102674076 294 - 106955855 ccctccctcccaccGCAGGTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTATATCTACCACAGTGACATCGTGCAGTCCCTGCCCCCGGTGAGC----------------C---CACCGCGTCACGGCCCCTCCGCTG--CCCCCCGGAGCCTTCCGCTA---------------TGCCCAGA---CAGCCTGAGC---AGCCA-CCCCACCATCTG--GCCCAGCTGACAGTAGCACTCAGGAGCTGGGA--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59957912 296 +  64156825 GTCCTCCTCCCACCGCAGGCGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATTGTGCAGTCCCTGCCCCCGGTGAGC----------------C---CACCGCGTCACAGCCCCTCCCCCGGCTCCCCTGGAGCCTTCCGCC----------------TGCCCAGA---CGGCCTGAGC---AGCCACCCCCACCATCtg--gcccagctgacagtagcactcaggagccgggg--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54961767 296 +  59248254 GTCCTCCTCCCACCGCAGGCGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATTGTGCAGTCCCTGCCCCCGGTGAGC----------------C---CACCGCGTCACAGCCCCTCCCCCGGCTCCCCTGGAGCCTTCCGCC----------------TGCCCAGA---CGGCCTGAGC---AGCCACCCCCACCATCtg--gcccagctgacagtagcactcaggagccggga--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47091918 296 +  51301725 GTCCTCCTCCCACCGCAGGTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTTGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATTGTGCAGTCCCTGCCCCCGGTGAGC----------------C---CACTGCGTCACGGCCCCTCCCCCGGCTCCCCTGGAGCCTTATGCC----------------TGCCCAGA---CGGCCTGAGC---AGCCACCCCCACCATCTG--GCCCAGCTGACAGTAGCACTCAGGAGCCGGGA--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46799489 311 +  50890351 GTCCTCCTCCCACCGCAGGTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCGCACACCGGCTACATCTACCACAGTGACATTGTGCAGTCCCTGCCCCCGGTGAGCCGCTGCGCCACGTGAGC---CACTGCGCCACGGCCCCT-CCCCGGCTCCCCTGGAGCCTTCCGCC----------------TGCCCAGA---CGGCCTGAGC---AGCCACCCCCACCATCtg--gcccagctgatggtagcactcaggagccggga--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45374889 286 +  49145316 CTCTTCCCTCCCCTGCAGGTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACACTGTCGGGCTTCTCATCCACCTCAGTGCTGCCCCATACCGGCTACATCTACCACAGCGACATCGTGCAGTCCCTACCCCCGGTGAGC----------------C---CACAGTGTCATTG-CCTGCCCCTGGCTCCCCTGGAACTTTCCACTG---------------TGCCCAGA---CAGCCT-AGA---AGCCACCCCTACCAT-----------CTGACAGTAGCACTCAGGGGATGGGA--
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3636182 256 + 145441459 CCTCACCTCTTGTTGCAGGTGTGGCTGGAGGGCTCACCAACCTCTCTAAGATGCCTGCCTGCAACATCATGCTGCTGGGAGCCCAGCGCAAGACCCTGTCTGGCTTCTCTTCTACCTCAGTGTTGCCTCATACTGGTTATATCTACCACAGTGACATTGTGCAGTCTCTGCCCCCAGTGAGT----------------CCTTCACCTTGTC----CCCTTCCCCCAGCCACC---AGGCCTT----------------------------------------------------------ATCTG--GCTTGGCTGGCAATATTCCTCAGGCTCCTGGA--
i mm10.chr7                 I 1203 I 95
s canFam3.chr1               19597538 309 - 122678785 CCCTCCTTCCTGTTGCAGGGGTGGCTGGGGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTTGGGGCCCAGCGGAAGACGCTGTCCGGCTTCTCGTCCACGTCTGTGCTGCCCCACACTGGTTACATCTACCACAGTGACATTGTGCAGTCTCTGCCCCCGGTGAGT---------------GC---CACTGGCATGTGGCTC-----------CCCGCAGAGCCTTTTGCTGGGCCAGAAGCAGCCTTGTCCAGAGGGCAGTGTGAGCCCAAGCAAGTTGCCCCCTCTGCTCCTCAGTTCCCATTGAC---TAGGAGCTcagagg
i canFam3.chr1              C 0 C 0

a score=1085808.000000
s hg38.chr19_GL949751v2_alt     99267 441 +   1002683 acagggtggcatgggacgtgagagccagggctctgcagcagaccagctccag--------------------cacccaccagtcaggtgactg-----------------tgggcaagaggcatgagcgccctgtgcctcagtctcctcccctatcaaatgggag-cacagcgcctgcttcat-gagttgggacgagggctcagtgcacatgaagcacttacagttcaggcctagctcacgacaagcAGCGTCGGGTTAGCGTGCAACT------gctccgaagaccaccctcaggtttgaccattcactagaaagactcacagaatccactgagggctgc------------------------------------acatcag----ccatgg--------ggagagacacacaggaggggcaggagaggtcaccaacctcggagcttcccgg-gtcctctccctgcagtcgggacacatcaccatcccagcatcgacgcctgacagcacacaCACAGGCC-----CGCTAGCCTggcg
s panTro4.chr19              59032763 441 +  63644993 acagggtggcatgggacgtgagagccagggctctgcagcagaccagctccag--------------------cacccaccagtcgggtgactg-----------------tgggcaagaggcgtgagcgccctgtgcctcagtctcctcccctatcaaatgggag-cacagcgcctgcttcat-gagttgggacgagggctcagtgcagatgaagcacttacaggtcaggcctagctcacaacaagcAGCGTCGGGTTAGCGTGCAGCT------gctccgaagaccaccctcaggtttgaccattcactagaaagactcacagaatccactgagggctgc------------------------------------acatcag----ccatgg--------ggagagacacactggaggggcaggagaggtcaccaacctcggagcttcccgg-gtcctctccctgcagtcgggacacatcaccctcccagcatcgacgcctgacagcacacaCACAGGCC-----CGCTAGCCTggcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55910863 441 +  60714840 acagggtggcatgggacgtgagagccagggctctgcagcacaccagctccag--------------------cacccaccagtcgggtgactg-----------------tgggcaagaggcgtgaacgctctgtgcctcagtctcctctcctatcaaatggcag-cacagcgcctgcttcat-gagttgggacgagggctcagtgcagatgaagcacttacaggccaggcctagctcacgacaagcAGCATCGGGTTAGTGTGCAACT------GCTccgaagaccaccctcaagtttgaccattcactagaaagactcacagaatccaCTGAGGGCTGC------------------------------------ACATCAG----CCATGG--------GGAGAGACACACAGGAGGGGCAGGAGAGGTCACCAACCTCGGAGCTTCCGGG-GTCCTCTCCCTGCAGTCGGGACACATCACCGTCCCAGCATCGACGCCTGACAGCACACACACAGGAC-----CGCCAGCCTGGTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102674370 453 - 106955855 acagggtggcatgggacgtgagagccagggctctgcagcagaccagctccag--------------------cacccaccagtcgggtgactg-----------------tgggcaagaggcatgagcgccctgtgcctcagtctcctcccctatcaagtgggag-cacagcgcctgcttcat-gagttgggacgagggctcagtgcagatgaagcacttataggtccggcctagctcacgacaagcAGCGTCGGGTTAGCGTGCAGCT------GCTccaaagaccaccctcaggtttgaccattcactagaaagactcactgaatccactgagggctgc------------------------------------tgtgctggggactatagtttataacagatagagacacaggaggggcaggagaggtcaccaacctcggagcttcccgg-gtcctctccctgcagtcaggacacatcaccgtcccagcatcggtaactgacagcacacacacaggac-----cgccagccTggcg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59958208 426 +  64156825 gcagggtagcatgggatgtgagagccagggttctgcagca------------------------------------cacctgtcgggtgactg-----------------tgggcaagaggcgtgagtgccctgtgcctcagtctcctcccctcgcaaatgggag-cacagcgcctgcttcac-gagtttgggcgagggctccatgcagacgaggccctcacaaggcaggcctagctcacgacaagcAGCGTCGGGTTA----GCAGCT------GCTCCGAAGGCCACC--------------GTCACTGGAAAGA--CACGGAA-CCCCTGAGGGCTGC-TGTGCTGGGGACTG---------TATAacagattaacattag----ccacag--------ggagagacacacaggaggagcagaagaggtcaccaacctcggagggcgatgt-gtcctctccctgcagtcaggacacatcgccctcccggcatcgatgcctgacag----cacacagggC-----CGCCAGCCTggcg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54962063 435 +  59248254 acagggtagcatgggatgtgagagccagggttctgcatca------------------------------------cacctgtcgggtgactg-----------------tgggcaagaggtgtgagtgccctgtgcctcagtctcctcccctcgcaaatgggag-cacagcgcctgcttcac-gagtttgggcgagggctccatgcagacgaggccctcacaaggcaggcctagctcacgacaagcAGCGTCGGGTTA----GCAGCT------GCTCCGAAGGCCACC--------------GTCACTGGAAAGa--cacggaa-cccctgagggctgc-tgtgctggggactatagtt----tataacaaactaacattag----ccacag--------ggagagacacacaggaggagcaggagaggtcaccaacctcggagggcgatgt-gtcctctccctgcagtcaggacacatcgccctcccggcatcgatgcctgacagcacacacacagggc-----cgccagccTggcg
i macFas5.chr19             C 0 I 15700
s papAnu2.chr19              47092214 427 +  51301725 ACAGGGTAGCATGGGATGTGAGAGCCAGGGTTCTGCATCA------------------------------------CACCTGTCGGGTGACTG-----------------TGGGCAAGAGGCGTGAGCgccctgtgcctcagtctcctccccTCGCAAATGGGAG-CACAGCGCCCGCTTCAT-GAGTTGGGACGAGGGCTCAATGCAAATGAAGCCCTTACAAGGCAGGCCTAGCTTACGACAAGCAGCGCTGGGTTA----GCAGCT------GCTCCGAAGGCCACC--------------GTCACTGGAAAGA-----------ACCTGAGGGCTGC-TGTGCTGGGGACTATAGTT----TATAACAAATTAACATTAG----CCACAG--------GGAGAGACACACAGGAGGAGCAGGAGAGGTCACCAACCTCGGAGGGCGATGT-GTCCTCTCCCTGCAGTCAGGATACATCGCCCTCCCAGCATCGATGCCTGACAGCACACACACAGGGC-----CGCCAGCctggtg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46799800 436 +  50890351 acagggtggcatgggatgtgagagccagggttctgcatca------------------------------------cacctgtcgggtgaccg-----------------tgggcaagaggcgtgagtgccctgtgcctcagtctcctcccctcgcaaatgggag-cacagcgtgtgcttcat-gagttgggacgagggctcaatgcagacgaagccctcacaaggcaggcctagctcacgacaagcAGCGTTGGGTTA----GCAGCT------GCTCCGAAGGCCACT--------------GTCACTGGAAAGA--CACGGAAGCCCCTGAGGGCTGC-CGTGCTGGGGACTATAGTT----TATAACAAATCAACATTAG----CCACAG--------GGAAAGACACACAGGAGGAGCAGGAGAGGTCACCAACCTCGGAGGGCGATGT-GTCCTCTCCCTGCAGTCAGGACACATCGCCCTCCCGGCATCGATGCCTGACAGCACACACACAGGGC-----CGCCAGCCTggcg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45375175 487 +  49145316 acagggtggcacggggcgtgagagccaggactctgcagtccaccagctctggtgcccaggctctggcagcgccacccaccaatca-gtgaccg-----------------tgggcaagaggcgtgagcgccctgtgcctcagtctc--cccccatcagacgggag-cacagcacctgcttcat-gagttaggacgagggctcaatgcagatgaagcccttccaagtcaggcctagctcacgacaagcAGCGTCGGGTTAGCGTGCAGCT------gctccaaagaccaccctcaggtctaaccgttcactagaaagactcatagaaccccctgaggactgc-tgtgctggggact-tagtt----tataacagtttaacatcag----ccatgg--------g----gacacacaggaggggcaggagaggtcagtgcccctggagcttcccag-gtcctct--cTGCCATCAGGGTACATCAGCCTCCCAGCTTTGATGCCTGGCAGCACATACACAGACCTAGAACACAAGCAGGAgg
i calJac3.chr22             C 0 I 2
s canFam3.chr1               19597847 461 - 122678785 atagggtcacacggggcataggaacaaggaccccagagcaga------------------------------tgtacaggggtagggattctggagctctacttaacaactgggcaagaggcatgag----ctgtgcctcagtgt-------tgtaaaatgggggaaatagaacctgcttcctggggttgtgattaggactcc---tatatgaaacactt-----ccaggtcttgcacataacaagcgATGTC--ATTAGCTtgcaagttgtaggggtctccaagccatccttgggttcagtagcccactagaggggtgtacagactccaagttgacccacttgggctatggtttgtcgtcgtgaaaggacagact-atttcag----ccactg--------gaggaagcgtatgaggcaggagccagaagt-gccagcctcagcgctttcagtcatcctctcc-----atcaggacatgtcac--tcctggcctccacatgtgacagcgtgcagaaagaac-----cgcccccaggg--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3636438  95 + 145441459 I

a score=37311.000000
s hg38.chr19_GL949751v2_alt     99708 15 +   1002683 gggcgcagtggctcg
s panTro4.chr19              59033204 15 +  63644993 gggcgcagtggctcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55911304 15 +  60714840 gggcgcagtggcttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102674823 15 - 106955855 gggcacggtggctcg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59958634 15 +  64156825 gggcgcggtggctca
i rheMac3.chr19             C 0 I 1923
s macFas5.chr19              54978198 15 +  59248254 gggcgcggtggctct
i macFas5.chr19             I 15700 C 0
s papAnu2.chr19              47092641 15 +  51301725 gggcacggtggctca
i papAnu2.chr19             C 0 I 1561
s chlSab2.chr6               46800236 15 +  50890351 gggcaccgtggctca
i chlSab2.chr6              C 0 I 1788
s calJac3.chr22              45375664 15 +  49145316 aggcacggaggctca
i calJac3.chr22             I 2 C 0
s canFam3.chr1               19598308 11 - 122678785 aggcccagctg----
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3636438 95 + 145441459 I

a score=85762.000000
s hg38.chr19_GL949751v2_alt     99723 29 +   1002683 tgcctgtcatcccagcactttgggaggcc
s panTro4.chr19              59033219 29 +  63644993 cactggtcatcccagcactttgcgaggcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55911319 29 +  60714840 cgcctgtcatcccagcactttgggaggcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102674838 27 - 106955855 --cctgtcatcccagcactttgggaggcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59960572 29 +  64156825 cgcctgtcaccccagcactttgggaggcc
i rheMac3.chr19             I 1923 C 0
s macFas5.chr19              54978213 29 +  59248254 cacctgtcaccccagcactttgggaggcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47094217 29 +  51301725 cgcctgtcaccccagcactttgggaggcc
i papAnu2.chr19             I 1561 C 0
s chlSab2.chr6               46802039 29 +  50890351 tgcctgtcacgccagcactttgggaggcc
i chlSab2.chr6              I 1788 C 0
s calJac3.chr22              45375679 29 +  49145316 tgcctgtaattccagcactttgggaggcc
i calJac3.chr22             C 0 I 467
s canFam3.chr1               19598319 29 - 122678785 agccttgaagttcagtctttcctggggct
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3636438 95 + 145441459 I

a score=490022.000000
s hg38.chr19_GL949751v2_alt     99752 172 +   1002683 gaggcgggcagat-cacctg---aggtcaggtgttcgagaccagcctggccaacatggtgaaaccccatctctaccaaaaatacaaaaaa-ctagct-gggtatagtggcacacacttataatcccagctacttgggagg--ctgaggcaggagaatcgcttgaacccaggaggtggagg
s panTro4.chr19              59033248 173 +  63644993 gaggcgggcagat-cacctg---aggtcaagtgttcgagaccagcctggccaacatggtgaaaccccatctctaccaaaaatacaaaaaaactagct-gggtatagtggcacacacttataatcccagctacttgggagg--ctgaggcaggagaatcacttgaacccaggaggtggagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55911348 173 +  60714840 gaggtgggcagat-cacctg---aggtcaggtgttcgagaccagcctggccaacatggtgaaaccccatctctaccaaaaatacaaaaaaactagct-gggtatggtggcccacacttataatcccatctacttgggagg--ctgaggcaggagaatcacttgaacccaggaggtggagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102674865 173 - 106955855 gaggcgggcagat-cacctg---aggtcaggtgttcgagaccagcctggccaacatggtgaaaccccatctccactaaaaatacaaaaaaactagcc-gggtatgtttgcacacacttataatcccaggtacttgggagg--ctgaggcaggagaatcgcttgaacccaggaggtggagg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59960601 173 +  64156825 aaggcgggcagat-catctg---aggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaatgagcc-aggtatggtggcgcacacttacaattccagctacttgggagg--ctgaggcaggagaatcgcttgaacccaggagatggaag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54978242 173 +  59248254 aaggcgggcagat-catctg---aggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaatgagcc-aggtatggtggcgcacacttacaattccagctacttgggagg--ctgaggcaggagaatcgcttgaacccaggagatggaag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47094246 173 +  51301725 gaggcgggcagat-catctg---aggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaatgagcc-aggtatggtggcgcacacttacaattccagctacttgggagg--ctaaggcaggagaatcgcttaaacccaggagatggaag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46802068 173 +  50890351 aaggcgggcagat-catctg---aggtcaggagttcgtgaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaacaatgagcc-aggtatggtggcgcacacttacaattccagctacttgggagg--ctgaggcaggagaattgcttgaacccaggagatggaag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45376175 172 +  49145316 gaggcaggtggat-gactgg---agatcaggagtttgagaccagcctggccaacatggtgaaacctcatctctact-aaaatattacaaaattagtc-aggtgtggtggcacatacttgtaatcccagctgcttggaaag--ctgaggcaggagaattgcttgaacccaggaggtggagg
i calJac3.chr22             I 467 C 0
s canFam3.chr1               19598348 152 - 122678785 tagttgaatagatgtgactgggtagcccaggtggttga------tctgggctccaggttgagagcctgt----------aacccaaagacctcaccctaaata---------acacggttggtctctGCCTTGTCCGAGGCCCCCAGGCCAAAAGATCACT---GCCCAGGAGATGAGGG
i canFam3.chr1              C 0 I 3047
e mm10.chr7                   3636438  95 + 145441459 I

a score=2712050.000000
s hg38.chr19_GL949751v2_alt     99924  960 +   1002683 ttgcagtgagctaagatcataccactgccctccagcctgggtgacagagtgagact-ctgtctcaaaaaaaaaaaaaaa------------------caagaCAGGTTCTGGGACAGA------------CAGGCCTGGGTCCAGACCCTGCTCTGTCCGACTGTGGCGAGTTACCTCAGGCTCACGGCCCTGTGCCCTGCCTGGCCTCCCCCAGGGATGGGGAGAACAATAGCACTGATGGCCAAGGCTGGGCAGGCACTTCCTGGCCCCACCCCCCAGCCCTGTGTGGG----GTTTTTTTTGTG--------GTCTTTTCTGCGACCCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTCACCCCATCCTGGGAGGAGAGAGAGTGGGCGATAGAACCCAGGACGGGTGGGCCTGGGGCTCGGGGCTCCAGCTGCCTCACTGCACCCCTGCCATCGCCACCGCCTCACAGCCCTGGGCATATGGGTTAAACCTGCCCCAGGGAGCCTGATGTCTTGTCAC-CCAGGCCTCTGCCTCTTCATTTGGCCATCTCACATCGGTCCAGGCACAGGCCGTAGACACCACAGGCCTGTAAGGGAGGCCAGGGCTGGC---CATCGCTTcactgtggctgacagct-gggctctgtttgcagtttggattggaaccctggctccatcacctgctggctgtctccctggccacatgacttgaagccttggtttccacatctgaaaagggggtgcaatgatcacaccagcccaatatttgaatatttgatgagatgatccgaggggcgtgcttagcatggggctggcatccagGCCGAGTGCACTCCC-------CCCGGCGTCTCCACAGTCACCACCGTCCTCGTTGTCAGCGTGCCTTACTGTCATCCTTACCTGA--TGGCCACTTATCAGCTGGGACATGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTAGGAGCTGAGAGCACACACCTCT
s panTro4.chr19              59033421  965 +  63644993 ttgcagtgagctaagatcataccactgccctccagcctgggtgacagagtgagact-ctgtctcaaaaaaaaaaaaaaaa------------acaaGCAAGacaggttctgggacaga------------caggcctgggtccagaccctgctctgtcCGACTGTGGCAAGTTACCTCAGGCTCACGGCCTTGTGCCCTGCCTGGCCTCCCCCAGGGATGGGGAGAACAATAGCACTGATGGCCAAGGCTGGGTGGGCACTTCCTGGCCCCACCCCCCAGCCCTGTGTGGG----TTTTTTTTTGTG----TGTGGTCTTTTCTGCGACCCTTTAGGTCAGGCACTGCTACTGGAATACA--CCCAGGGAGGCTGGCAGGTCACCCCATCCTGGGAGGAGAGAGAGTGGGCGATAGAACCCAGGACGGGTGGGCCTGGGGCTCGGGGCTCCAGCTGCCTCACTGCACCCCTGCCATCACCACCGCCTCACAGCCCTGGGCATATAGGTTAAACCTGCCCCAGG-AGCCTGATGTCTTGTCAC-CCAGGCCTCTGCCTCTTCATCTGGCCATCTCACATCGGTCCAGGCACAGGCCGTAGACACCACAGGCCTGTAAGGGAGGCCAGGGCTGGC---CATTGCTTcactgtggctgacagct-gggctctgtttgcagtttggattggaaccctggctccatcacctgctggctgtctccctggccacatgacttgaagccttggtttccacatctgaaaagggggtgcaatgatcacaccagcccgatatttgaatatttgatgagatgatccaaggggcgtgcttagcacggggttggcatccagGCCGAGTGCACTCCC-------CCCGGCGTCTCCA--GTCACCACCGTCCTCGTTGTCAGCGT--CTTACTGTCATCCTTACCTGA--CGGCCACTTACCAGCTGGGACATGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGGAGGAGCTGAGAGCACACACCTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55911521  968 +  60714840 ttgcagtgagctaagatcataccactgccctccagcctgggtgacagagtgaga---ctgtctcaaaaaaaaaaaacaa-----------------GCAAGacaggttctgggacaga------------caggcctgggtccggaccctgctctgtccgactgtggcgagtgacctcaggctcatggccctgtgccctgcttggcctcccccagggatggggagaacaataGCACTGATGGCCAAGGCCGGTTGGGCATTTCCTGGCCCCACCCCCCAGCCCTGTGTGGG----TTTTTTTTTTTT--TTTTTGGTCTTTTCTGTGACCCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTCGCCCCATCCTGGGAGGAGGGAGAGCGGGCGATAGAACCCAGGACTGGTGGGCCTAGGGCTCGGGACTCCAGCTGCCTCACTGCACCCCTGCCATCGCCGCCGCCTCACAGCCCTAGGCATATGGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCAC-CCAGGCCTCTGCCTCTTCATTTGCCCATCTCACATCAGTCCAGGCACAGGCCGTAGACATCACAGGCCCGGAAGGGAGGCCAGGGCTGGCCATCATCACTTcactgtggctgacagct-gggctctgtttgcggtttggattggaaccctggctccatcacctgctggctgtctccctggccacatgacttgaagccttggtttccacatctgaaaagggggtgcaatgatcacaccagcccaatatttgaatatttgatgagatgatccaaggggcgtgcttagcacagggctggcatccagGCCGAGCACACTCCC-------CCCGGCGTCTCCACAGTCACCACTGTGCTCGTCGTCAGCATGTCTTACTGTCATCCTTACCTGA--CGGCCACTTACCAGCCGGGACATGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTGGGAGCTGAGAGCACACACCTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102675038  970 - 106955855 ttgcagtgagctaagaccataccactgccctccagcctgggtgacagagtgagact-ctgtctcaaaaaaaaaaaaaaa--------------caaTCAAGACAGGCTCTGGGACAGA------------CAGGCCTGGGTCCAGACCCTGCTCTGTCCAACTGTGGCGAGTGACCTCAGGCTCATGGCCCTGTGCCCTGCCTGGCCTCCCCCAGGGATGGGGAGAACAATAGCACTGATGGCCGAGGCCGGGTGGGCATTTCCTGGCCCCATGCCCCAGCCCTGTGTGGG----CttttttttttttttttttggtcttttCTGTGACCCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTTGCCCCTTCCTGGAAGGAGGGAGAGTGGATGATAGAACCCCGGACTGGTGGGCCTGGGGCTCAGGGCTCCAGCTGCCTCCCTGCACCCCTGCCATCGCCGCCGCCTCACAGCCGTAGGCATATGGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCAC-CCAGGTCTCTGCCTC--CATTTGCCCATCTCACATCGGTCCAGGCACAGGCCGTACACATCACAGGCCCGTAAGGGAGGCCAGGGCTGGC---CATCGCTTCACTgtggctgacagct-gggctctgtttgcagtttggattggaagcctggctccatcacctgctggctgtctccctggccacatgacttgaagccttggtttccacatctgaaaagggggtgcgatgatcgcaccagcctgatatttgagtgtttgatgagatgagccgaggggcgtgcttagcacgggcctggcatccagGCCGAGCGCACTCCG-------CCCGGCGTCTCCACAGTCGTCACTGTCCTCGTCGTCAGTGTGTCTTACTGTCATCCTTACCTGA--CGGCCACTTACCAGCCGGGACATGGCTGTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTGGGAGCTGAGAGCACACACCTCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59960774 1005 +  64156825 ttgcag-gggccaagatcacaccactgccctctagtctgggcgacagagtgagact-ctgtctcaaaaaaagaaaaagaaaaaaacagaaaCAtaagcaagacaggctctgggacagacaggcctgggttcaggcctgggtccagaccctgctgtgtccgactgtggcaagtgacctcaggctcatggccctgtgccctgcccggcctcccccagggatggggagaacaatagcacTGATGGACAAGGCCAGGTGGTTGTTTCCTGGCCCCACCCCCCAGGCCTGTGTAGGtttttttttttttttt-ttttttggttttttCTGTGACTCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTCGCCCCATCCTGGGAGGAGGGAGAGCGGGCGATAGAACCCAGGACT-GTGGGCCTGGGGCTCGGGGCTCCAGCCGCCTCACTGCACTCCTGCCATCGCCACCGCCTCACAGCCCTAGGCATGTGGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCA--CCAGGCCTCTGCCTCCTCATTTGCCCATCTCACATCAGTCCAGGCACAGGCCATAGACATCACAGGCCTGTAAGGGAGGCCAGGGCTGGC---CATCGCTgcactgcggctgacagct-gggctctgtttgcagtctggattggaaccctggctccatcacctgctggctgtcttcccggccacatgacttgaagccttggtttccacatctgaaaagggggtgcaatgatcacaccagcctgatatttgcatatttgatgagatgatccgaggggcatacttagcacagggctggcatccaggctgagcgcACTCCCCCGCC--GCCAGTGTCTCCACAGTCACCACTGTCCTCCTCGTCAGCGTGTCTTACTGTCATCCTTACCTGACTCTGCCACTTACCAGCTGGGACGTGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTGGGAGCTAGGAGCACACGCCTCG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54978415 1001 +  59248254 ttgcag-gagccaagatcacaccactgccctctagtctgggcgacagagtgagact-ctgtctcaaaaaaagaaaaagaaaaaaacagaaaCATAAGCAAGACAGGCTCTGGGACAGACAGGCCTGGGTTCAGGCCTGGGTCCAGACCCTGCTGTGTCCGACTGTGGCAAGTGACCTCAGGCTCGTGGCCCTGTGCCCTGCCCGGCCTCCCCCAGGGATGGGGAGAACAATAGCACTGATGGACAAGGCCAGGTGGTTGTTTCCTGGCCCCACCCCCCAGGCCTGTGTAGG----tttttttttttt-ttttttggttttttCTGTGACTCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTCGCCCCATCCTGGGAGGAGGGAGAGCGGGCGATAGAACCCAGGACT-GTGGGCCTGGGGCTCGGGGCTCCAGCCGCCTCACTGCACTCCTGCCATCGCCACCGCCTCACAGCCCTAGGCATGTGGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCA--CCAGGCCTCTGCCTCCTCATTTGCCCATCTCACATCAGTCCAGGCACAGGCCATAGACATCACAGGCCTGTAAGGGAGGCCAGGGCTGGC---CATCGCTgcactgcggctgacagct-gggctctgtttgcagtctggattggaaccctggctccatcacctgctggctgtcttcccggccacatgacttgaagccttggtttccacatctgaaaagggggtgcaatgatcacaccagcctgatatttgcatatttgatgagatgatccgaggggcatacttagcacggggctggcatccaggctgagcgcACTCCCCCCAC--TCCAGTGTCTCCACAGTCACCACTGTCCTCGTCGTCAGCGTGTCTTACTGTCATCCTTACCTGACTCTGCCACTTACCAGCTGGGACGTGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTGGGAGCTAGGAGCACACGCCTCG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47094419  999 +  51301725 ttgcag-gagccaagatcacaccactgccctctagtctgggcgacagagtgagact-ctgtctcaaaaaaaaaaaaaacaaaaaacagaaacataagcAAGACAGGCTCTGGGACAGACAGGCCTGGGTTCAGGCCTGGGTCCAGACCCTGCTGTGTCCGACTGTGGCAAGTGACCTCAGGCTCATGGCCCTGTGCCCTGCCCGGCCTCCCCCAGGGATGGGGAGAACAATAGCACTGATGGACAAGGCCAGGTGGTTGTTTCctggcccca-cccccaggcctgtgtagg-------ttttttttt-tgttttggttttttctgTGACTCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTCGCCCCatcctgggaggagggagagcggGCGATAGAACCCAGGACT-GTGGGCCTGGGGCTCGGGGCTCCAGCcgcctcactgcactcctgccATCGCCACCGCCTCACAGCCCGAGGCATGTGGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCA--CCAGGCCTCTGCCTCCTCATTTGCCCATCTCACATCAGTCCAGGCACAGGCCGTAGACATCACAGGCCTGTaagggaggccagggctggc---tATCGCTGCACTGCGGCTGACAGCT-GGGCTCTGTTTGCAGTCTGGATTGGAACTCTGGCTCCATCACCTGCTGGCTGTCTTTCCGGCCACATGACTTGAAGCCTTGGTTTCCACATCTGAAAAGGGGGTGCAGTGATCACACCAGCCTGATATTTGCATATTTGATGAGATGATCCAAGGGGCATACTTAGCACGGGGCTGGCATCCAGGCTGAGCGCACTcccccccccGCCCGGTGTCTCCACAGTCACCACTGTCCTCGTCGTCAGCGTGTCTTACTGTCATCCTtacctgactctgccacttaccagctgggACGTGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTGGGAGCTAGGAGCACACGCCTCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46802241 1001 +  50890351 ttgcag-gagccaagatcacaccactgccctctagtctgggcgacagagtgagact-ctgtctcaaaaaaaaaaaaag-aaaaaacagaaaCACAAGCAAGacaggctctgggacagacaggcctgggttcaggcctgggtccagaccctgctgtgtccgactgtggcaagtgacctcaggctcatggccctgtgccctgcccagcctcccccagggatggggagaacaatagcacTGATGGACAAGGCCAGGTGGTTGTTTCCTGGCCCCA-CCCCCAGGCCTGTGTAGG----Gttttttttttt-ttttttggttttttCTGTGACTCTTTAGGTCAGGCACTGCTACTGGAACACA--CCCAGGGAGGCTGGCAGGTTGCTCCATCCTGGGAGGAAGGAGAGCGGGCGATAGAACCCAGGACT-GTGGGCCTGGGGCTTGGGGCTCCAGCCGCCTCACTGCACTCTTGCCATTGCCACCGCCTCACAGCCCTAGGCATGTAGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCA--CCAGGCCTCTGCCTCCTCATTTGCCCATCTCACATCAGTCCAGGCACAGGCCGTAGACATCACAGGCCCATAAGGGAGGGCAGGGCTGGC---CATCGCTgcactgcggctgacagct-gggctctgtttgcagtctggattggaaccctggctccatcacctgctggctgtcttcccggccacatgacttgaagccttggtttccacatctgaaaagggggtgcaatgatcgcaccagcctgatacttgcatatttgatgagatgatccgaggggcatacttagcacggggctggcatccaggctgagcgcACTCCCCCACCCGCCCGGTGTCTCCACAGTCACCACTGTCCTCGTCGTCAGCATGTCTTACTGTCATCCTTACCTGACTCTGCCACTTACCAGCTGGGACGTGGCTCTGTGCCCTGCCCTCATCCCCTCTTCCTGTGAAGTGGGAGCTAGGAGCACACACCTCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45376347  897 +  49145316 ttgcagtgagccaagatcaca-cactgcattccagcctgagcgataaagtaagactcccatctcaaaaaaaaaacaaaa-------------aCAGGCaggacaggctctggggcaga------------caggcctgggtccagatcctgctctgtccggttgcagcaagtgacctcaggcTCATGGCCCTGTGCCCTGCCCGGCCTCCCTCGGGGTCGCAGAGAACAACAGCACCGATGGCCAA-------------------GGCCCCA--TTCCTGCCCTGTGTGGG----GTTGTTGTTTTG--------GTCTTTTCTGTGACCCTTTAGGTCAGGCACTGCTATTGGAACACACCCCCAGGGGTGCTGGTGGGTCACCCCATCCTGGGAGAAGGGAGAGTGGGCTTTAGAACCCAGGAGTGGTGGGCCTGAGGCTCGGGGCTCCAGCCACCTCATAA------GGCCATCACCACTGCCTCACAGCCCTAGGC-TGTGGGTTAAACCTGCCCCAGGGAGCCTGGTGTCTTGTCACACAGGGCCTCTGCCGCCTCATCTTCCCATCCCAGATCGGTCCAGGCACAGGATGTAGACATCACAGGCCTGTAAGGGAGGCCAGGGCTggc---catcgcgtcgctgtggctgagagctggggctctgtttgcagtctggatcggaaccctggctccatcacctcccggctgtgtcgctagcgatgtgacttggagccttggtgtccacacctgaaaagggggtgcagtgatcacagcagcccgatgtttgagtattcgatgagatggcccaaagggcacacttagcacggagctggtatccaggctgagtgcACTCCC----------------------------------------------------AGCTGGTGTGCTTACCTGACTCTGCCGCTCACCAGCCCAGACGTGGCTCTGCACCCTGCCCTCATCCCCTCTT-CTGTGAAGAGGGAGCTAAGAGCATACACCTCT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3636438   95 + 145441459 I
e canFam3.chr1               19598500 3047 - 122678785 I

a score=239302.000000
s hg38.chr19_GL949751v2_alt    100884 94 +   1002683 AGAGCCCAAGGGTGGAAAGCCC-CCTTCCAGGACCCCAGGTAGAG-----CCAGAGGAGGAGCGCGCGCGGTTGCTTTGCTGTTACCTCTGTCTGTCTGT
s panTro4.chr19              59034386 94 +  63644993 AGAGCCCAAGGGTGGAAAGCCC-CCTTCCAGGACCCCGGGTAGAG-----CCAGAGGAGGAGCGCGCGCGGTTGCTTTGCTGTTACCTCTGTCTGTCTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55912489 92 +  60714840 AGAGCCCAAGGGTGGAAAGCCC-CCTTCCGGGA-CCAGGGTAGAG-----CCAGAGGAGGAGCGTGCGCGGTC-CTTTGCTATTACCTCTGTCTGTCTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102676008 94 - 106955855 AGAGCCCACGGGTGGAAAGCCC-CCTTCCGGGACCCAGGGTAGAG-----CCAGAGGAGGAGTGCGCGCGGTTGCTTTGCTATTACCTCTGTCTGTCTGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59961779 94 +  64156825 AGAGCCCATGGGTGGACAGCCC-CCTTCCGGGACCCAGGGTAGAG-----CTGGAGGAGAAGTGCCCGTGGTTGCTTTGCTATTACCTCTATCTGTCTGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54979416 94 +  59248254 AGAGCCCACGGGTGGACAGCCC-CCTTCCGGGACCCAGGGTAGAG-----CTGGAGGAGAAGTGCCCGTGGTTGCTTTGCTATTACCTCTATCTGTCTGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47095418 94 +  51301725 AGAGCCCACGGGTGGACAGCCC-CCTTCCGGGACCCGGGGTAGAG-----CTGGAGGAGAAGTGCCCGTGGTTGCTTTGCTATTACCTCTATCTGTCTGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46803242 94 +  50890351 AGAGCCCACGGGTGGACAGCCC-CCTTCCGGGACCCAGGGTAGAG-----CTGGAGGAGAAATGCCTGTGGTTGCTTTGCTATTACCTCTATCTGTCTGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45377244 66 +  49145316 AGAGCCTGC-----------------------------AGTGGAG-----CCAGATGAGAAGCACCCACTGTTGGTGTGCAGTTATGTCTGTCTGTCTGT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3636533 97 + 145441459 AGAGCCCACGGGTATGAGGCTTACCTCCCAGAGTCTGGGGTATGGCTGCCCTAGATGAGGAGTGACTATTGTAG--TGGCTGTTACCT-TCTCTAGAGGT
i mm10.chr7                 I 95 C 0
e canFam3.chr1               19598500 3047 - 122678785 I

a score=548290.000000
s hg38.chr19_GL949751v2_alt    100978 133 +   1002683 CTCACACAGATTCCACCCCCGTTTTCCGTTGCTCCAGGATCTGCGGCGGAAAGCGGCCCGGCTGGTGGCCGCCAAGTGCACACTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACAGAAGGGAAGGTGA----------------------------GG
s panTro4.chr19              59034480 133 +  63644993 CTCACACAGATTCCACCCCCGTTTTCCGTTGCTCCAGGATCTGCGGCGGAAAGCGGCCCGGCTGGTGGCCGCCAAGTGCACACTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACAGAAGGGAAGGTGA----------------------------GG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55912581 133 +  60714840 CTCACACAGATTCCACCCCCGTTTTCCATTGCTCCAGGATCTGCGGCGGAAAGCGGCCCGGCTGGTGGCCGCCAAGTGCACACTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACGGAGGGGAAGGTGA----------------------------GG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102676102 119 - 106955855 CTCATACAGATTCCACCCCCGTTTTCCGTTGCTCCAGGATCTTCGGCGGAAAGCGGCCCGGCTGGTGGCCGCCAAGTGCACACTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCAC------------------------------------------GG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59961873 161 +  64156825 CTCACACAGATTCCACCCCCGTTTTCCATTGCTCCAGGATCTCCGGCGGAAAGCGGCCCGGCTGGTGGCTGCCAAGTGCACGTTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACggaggggaaggtgaggagaggaaggtgagggggggaaggtgagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54979510 161 +  59248254 CTCACACAGATTCCACCCCCGTTTTCCATTGCTCCAGGATCTCCGGCGGAAAGCGGCCCGGCTGGTGGCTGCCAAGTGCACGTTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACGGAGGGGAAGGTGAGGAGGGGAAGGTGAGGGGGGGAAGGTGAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47095512 161 +  51301725 CTCACACAGATTCCACCCCCGTTTTCCATTGCTCCAGGATCTCCGGCGGAAAGCAGCCCGGCTGGTGGCTGCCAAGTGCACGTTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACggaggggaaggtgagcgggggaaggtgaaggggggaaggtgagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46803336 134 +  50890351 CTCACACAGATTCCACCCCCGTTTTCCATTGCTCCAGGATCTCCGGCGGAAAGCGGCCCGGCTGGTGGCTGCCAAGTGCACGTTGGCAGCCCGTGTGGACAGTTTCCACGAGAGCACggaggggaaggtgag---------------------------gg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45377310 133 +  49145316 CTCACACAGATTCCATTCCCGTTTTCCATTGCTCCAGGATCTCCGGCGGAAAGCGGCCCGGCTGGTGGCTGCTAAGTGCACGCTGGCAGCCCGCGTAGACAGTTTCCATGAGAGCACGGAGGGGAAGGTGA----------------------------GG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3636630 113 + 145441459 T-----CAGTTTCCTTTCTC-CTTGCCATTGCTCCAGGATCTCCGGCGGAAGGCGGCCCGCCTAGTGGCTGCCAAGTGTACACTGGCAGCTCGTGTGGACAGCTTCCATGAGAGCAC------------------------------------------AG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19601547 131 - 122678785 CTCCCATTGACTCTGCCCCC--TTTCTGCTGCCTCAGGATCTCCGGCGGAAAGCGGCTCGGCTGGTGGCTGCCAAGTGCACACTGGCAGCCCGTGTGGACAGCTTCCACGAGAGCACAGAAGGGAAGGTGA----------------------------GG
i canFam3.chr1              I 3047 I 930

a score=1194434.000000
s hg38.chr19_GL949751v2_alt    101111 411 +   1002683 AGGGAAAGGTGAG----------GGGCGGCCGGGCGTCTTTTCCTCTGGGCCTGGGGTGTCTCTGCAGGGAGA-CCCTCAGCAGGGAG----------------CCCACCCCAGCGAGCACTGTCCTACCAAGGCGGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGGTCAGGCACCCCCTTCCCCAGTGGG---gtttcctaggtctgctgttggaaggtagcatgaacctactggcttcaaacagtgcaggtgtggccgggtgcagtagctcacgcctgtaatcccagcactttgggaggccagggtgggcgggtcacaaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccgggtgtggtggcacgcacctgtaatcccagttactcaggaggctgaggcaggagaatt
s panTro4.chr19              59034613 407 +  63644993 AGGGAAAGGTGAG----------GGGCGGCCGGGCGTC-----CTCTGGGCCTGGGGTGTCTCTGCAGGGAGAGCCCTCAGCAGGGAG----------------CCCACCCCAGCGAGCACTGTCCTACCAAGGCGGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGGTCAGGCACCCCCTTCCCCAGTGGG---gtttcctaggtctgctgttggaaggtagcatgcacctactggcttaaaacagtgcaggtgtggccgggtgcagtagctcacacctgtaatcccagcactttgggaggccaaggtgggcgggtcacaaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccgggtgtggtggcacgcacctgtaatcccagttactcaggaggctgaggcaggagaatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55912714 411 +  60714840 AGGGAAAGGTGAG----------GGGCGGCCGGGCGTCTTTTCCTCT-GGTCTGGGGTGTCTCTGCGGGGAGAGCCCTCAGCAGGGAG----------------CCCGCCCCAGCGAGCACTGTCCTACCAAGGCCGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGGTCAGGCACCCCCTTCCCCAGTGGG---gtttcctagggctgctgttggaaggtagcatgaacctactggcttaaaacagtgcaggtgtggccgggtgcggtagctcacgcctgtaatcccagcactttgggaggccaaggtgcgtgggttacaaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccgggtgtggtggcatgcgcctgtaatcccagttactcaggaggctgaggcaggagaatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102676221 411 - 106955855 AGGGAAAGGTGAG----------GGGCGGCCGGGCGTCTTTTCCTGT-GGCCTGGGGTGTCTCTGCCAGGAGAGCCCTCAGCAGGGAG----------------CCCACCCCAGCGGGCACCGTCCTACCAAGGCGGAGGCAGTGTTTCTGCCC---ACCCTCCCTGGGGTCAGGAACCCCCTTCCCCAGTGGG---gtttcctaggactgctgttggaaggtagcatgaacctactggcttaaaacagtgcaggtgtggccgggtgcggtagctcacgcctgtaatcccagcacttcgggaggccacggtgggcagatcacaaggtcagg-----------------agtttgagaccagcctggtcaacatggtgaaaccctatctc---------t----accaaaattagcccggtgtggtggcacacacctgtaatcccagttactcaggaggctgaggcaggagaatc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59962034 422 +  64156825 aggggaaggtgagggggggaaaagggcggCCGGGCGTCTTTTCCTCTGGGCCTGGAGTGTCTCTGCGGGGAGAGTCCTCAGCAGGGAG----------------CCCACCCCAGCAAGCACTGTCC-ACCAAGGTAGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGG-CAGGCG-CCCTTTTCCCAGTGGGttcgtttcctagggctgctgttggaaagtagcacaaacctactggcgtaaaacagttttggtttggccgggcgcggtggctctcgcctgtaatcccagcactttgggaggccgaggtgggcggatcataaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccagatgtggtggcacgtacctgtaatcccagttactcaggaggctgaggcaggagaatc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54979671 412 +  59248254 GGGGGAAGGTGAG----------GGGCGGCCGGGCGTCTTTTCCTCTGGGCCTGGAGTGTCTCTGCGGGGAGAGTCCTCAGCAGGGAG----------------CCCACCCCAGCAAGCACTGTCC-ACCAAGGCAGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGG-CAGGCG-CCCTTTTCCCAGTGGGttcgtttcctagggctgctgttggaaagtagcacaaacctactggcgtaaaacagtgcaggtttggccgggcgcggtggctctcgcctgtaatcccagcactttgggaggccgaggtgggcggatcataaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccagatgtggtggcacgtacctgtaatcccagttactcaggaggctgaggcaggagaatc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47095673 428 +  51301725 aggggaaggtgag----------gggCGGCCGGGCATCTTTTCCTCTGGGCCTGGAGTGTCTCTGCGGGGAGAGCCCTCAGCAGGGAGCCCACCCCAGCAAGCACCCACCCCAGCAAGCACTGTCC-ACCAAGGCAGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGG-CAGGTG-CCCTTTCCCCAGTGGGTTcattttctagggctgctgtTGGAAAGTAGCACAAACCTACTGGCGTAAAACAGTGcaggtttggccgggcgcggtggctctcgcctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccagatgtggtggcacgtacctgtaatcccagttactcaggaggctgaggcaggagaatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46803470 412 +  50890351 gggggaaggtgag----------gggcggCCAGGCGTCTTTTCCTCTGGGCCTGGGGTGTCTCTGTGGGGAGAGCCCTCAGCAGGGAG----------------CCCACCCCAGCAAGCACTGTCC-ACCAAGGCAGAGGCAGTGCTTCTGCCC---ACCCTCCCTGGGG-CAGGCG-CCCTTTCCCCAGTGGGttcgtttcctagggctgctgttggaaagtagcacaaacctactggcgtaaaacagtgcaggtttggccgggcgcagtggctctcgcctgtaatcccagcactttggaaggccaaggcaggtggatcacaaggtcagg-----------------agtttgagaccagcctggccaacatggtgaaaccccatctc---------t----accaaaattagccagatgtggtggcacatacctgtaatcccagttactcaggaggctgaggcaggagaatc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45377443 418 +  49145316 AGGGGAAGGAG-G----------GGGCGGCCGGGCGTCCTTTCCTCTGGGCCTGGGGTGTCTGTGCGGGGAGAGCCC-CAGCAGGGAG----------------CTCACCCCAACAAGCACTGTCCTACCAGGGCAGAGGCAGTGTTTCTGCTG---ACCCTCCCTGGGGTCAGGCG-CCCCTTCCCCAGtgtgttcattccctagggctgctataggaaggtagcacaaacctactggcttaaaacagcacaggtttggctgggcaagttggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcagg-----------------agttcgagaccagcctggccaacatggtgaaaccacgtctctattatagat----acaaaaattagtcaggcatgg-ggtgcgcacctgtaatcccagttactctggaaac--aggcaggagaatc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3636743 384 + 145441459 AAGGGAAGGTGAG----------GAGAGGACAGGCATCTGTCCCTG-GTGCTTGGGGTCTTTTCATGGGAAGATGCTACTTCAGAGA-----------------CCTCTTCTGACTAGCA------------GACAGA-----TGTGTCTGTCTGCAACCCCTACTGAGGCCA-----TCACATTCTCAG----------CTCTGTATCAGTTATGACAACTCACTATAGATGGAGTAGCTTCATATA----AAAGTTGGCTAGG------------CCTctttaacatcaatactt-gagagacagaggtgggaagatcattagtttgaggcagtctgggttatataagtttcaggccagactgggctgcatagtgaaatcctgtgtt---------tgaaaagaaaaaaAGCCCAgggctggagatgcggctccatcacttcagttcct--gcatgc--aagcatgagaact
i mm10.chr7                 C 0 I 1444
e canFam3.chr1               19601678 930 - 122678785 I

a score=2579485.000000
s hg38.chr19_GL949751v2_alt    101522 902 +   1002683 gcttgaacctgggagacggaggttgcagtgaactgagattgcatcattgcactccagcttgggtgacatagcgagactccatctaa-------aaacaaaaacaaaaa------------acagtacaggtttattatctgtggtcctgtaggtcagaagtccaaaatgagtttcactgggctgaagtcagggtgtcatcctggagcgttccttctgggggattcaagggataatccattcccttgtcttttccagcttctaggggtcactggcaccccttagctcgtggccctccctctgtctgcggagccagccacatagcaccctcagacctctctctgactctgcttctgtcttcatatctcggcctctgtttttgttcccctcttctattttaagggcccctgtggctatactgagcctactcagatggtccaggatagtcttcccagctcacaatccttaaaatccttcttaacctcttcacgtcccttttgccctgt---------------gattctgggaattagaacatgggcctctttgggCATGTGTGTGTTGGTGGGGGCGTAATTTGCCTTCCACACCAGGATCTGTCCCCGCTGCAACAGGGGATGTTATTCAAGtaattattcagttaccttctgtcttccttggtagatgtactcgggagaggag--acgttttctgtcttgtgaactgtcgtttgccaagcacccggcctggcacagcgttcaggtgttccgtGTCCC---CTTCTCCTTTCCCTCTCCCCATCTCACCCctggtctgggtgtggggg-tgcagctgtgagtagcacagacaggacccctgccccgtggcgtggacattcttgttggggccgggtcaaagagacagtcaacaggtgaactctgtcctgcgtctagcggtgctaagtcaacaccaagaagaaaaa
s panTro4.chr19              59035020 908 +  63644993 gcttgaacctgggagacggaggttgcagtgaactgagattgcatcattgcactccagcttgggtgacatagggagactccatctaa-------aaacaaaaacaaaaa------caaaaaacagtacaggtttattatctgtggtcctgtaggtcagaagtccaaaatgagtttcactgggctgaagtcagggtgtcagcctggagtgttccttctgggggattcaagggataatccattcccttgtcttttccagcttctaggggtcactggcaccccttagctcgtggccctccctctgtctgcggagccagccacatagcaccctcagacctctctctgactctgcttctgtcttcatatctcggcctctgtttt-gttcccctcttctattttaagggcccctgtggctatactgagcctactcagatggtccaggatagtcttcccagctcacaatccttaaaatccttcttaacctcttcacgtcccttttgccctgt---------------gattctgggaattagaacatgggcctctttgggCATGTGTGTGTTGGTGGGGGCGTAATTTGCCTTCCACACCAGGATCTGTCCCCGCTGCAACAGGGGATGTTATTCAAGtaattattcagttaccttctgtcttccttggtagatgtactcgggagaggag--acgttttctgtcttgtgaactgtcgtttgccaagcacccagcctggcacagcgttcaggtgttccgtGTCCC---CTTCTCCTTTCCCTCTCCCCATCTCACCCctggtctgggtgtgggggctgcagctgtgagtagcacagacaggacccctgccccgtggcgtggacattcttgttggggccgggtcaaagagacagtcaacaggtgaactctgtcctgcgtctagcggtgctaagtcaacaccaagaagaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55913125 917 +  60714840 gcttgaacctgggagacagaggttgcagtgaactgagattgcatcattgcactccagcctgggtgacagagcgagactccatctaa-------aaataaaaacaaaaacaaaaacaaaaaacagcgcaggtttattatctgtggtcctgtaggtcagaagtccaaaatgagtttcactgggctgaagtcagggtgtcagcctggagcgttccttctgggggattcaagggataatccattcccttgtcttttctagcttctaggggtcactggcaccccttagctcgtggccctccctctgtctgcggagccagccacatagcactctcagacctctctctgactctgcttctgtcttcatatctcggcctctgtttttgttcccctcttctattttaagggcccctgtggctatactgagcctactcagatggtccaggatagtcttcccagctcacaatccttaaaatccttcttaacctcttcacatcccttttgccctgt---------------gattctgggaattagaacatgggcctccttgggCATGTGTGTGTTGGTGGGGGTGTAATTTGCCTTCCACACCAGGATCTGTCCCCGCTGCAACAGGGGatgttattcaagtaattattcagttatcttctgtctt-cttggtagatgtactcgggagaggag--acgttttctgtcttgtgaactgtcgtttgccaagcacctagcctggcacagcgttcaggtgttcCGTGTCCCCTTCTTCTTCTTTCCCTCTCCCCATCTCACCCctggtctgggtgtggggggtgcagctgtgagtagcacagacaggagccctggcccgtggcgtggacattcttgtgggggccgggtcaaagagacagtcaacaggtgaaccttgtcctgtgtctagcagtgctaagtcaacaccaagaagaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102676632 924 - 106955855 gcttgaacccgggagacagaggttgcagtgaactgagattgcatcattgcactgcagcctgggtgacagagcaagacaccatctaa-------aaaacaaaacaaaac---------aaaacagtgcaggtttattatctgtggtcctgtaagtcagaagtccaaaatgagtttcactgggctgaagtcagggtgtcagcctggagcgttccttctgggggattcaagggataatccattcccttgtcttttccagcttctaggggtcactggcaccccttagctcatggccctccctctgtctgtggagccagccacatagcaccctcagccctctctctgaccctgcttctgtcttcatatctcggcctctgtttt-tctcccctcctctattttaagggcccttgtggctatactgagcctacccagatggtcccggatggtcttcccagctcacagtccttaaaatccttcttaacctcgtcacatccctgttgccctgtgaagtgacattcacagattctgggaattggaacatggacctccttgggCGTGTGTGTGTTGGTGGGGGCGTAATTTGCCTTCCACACCAGGACCTGCCCCCGCTCCAACAGAGGAtgttactcaagtcattattccgttaccttctgtcttccttggtagaggtactcgggagaggagacacgttttctgtcttgtgaactgtcgtttgcctagcacccagcctggcacagcattcaggtgttctgtGTCCCCTTCTTCTCCTTTCCCTCTCCCCACCTCACCCctggtctgggtgtggggg-tgcagctgtgagtagcacagacgggagtcctgccccgtggtgtggacattcttgttggggccgggtcaaagagacagtcaacaggtgaactctgtcctgcgtctagcagtgctaagtcaacaccaagaagagaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59962456 935 +  64156825 gcttgaaccagcgagccagaggttacagtgaactgagattgcaccactgcactccagtctgggtgacagagcgagactccatctaaaagaaa-aaaacaaaacaaaacaaaat-aaaaaaacagtgcaggtttattatctgtggtcctgtaggtcaggagtctaaaataagtttcactaagttgaagtcagggtgtcagcccggagggttccttctaggggagtcaagggataatccattcccttgtc-tttccagcttctaggggtcactggcaccccttagctcgtggccctccctctgtgtgcggagccagctgcatagcaccctcagagctctctctgaccctgcttctgtc-tcatatct-ggcctctgtttttgttcccc-cctctatgttaagggcccttgtggctatactgagcctactcagatggtccaggatagtcttcccagctcacaatccttaatatccttcttaatctcttcacgtcccttttgccctgtgaggtgacattcagaggttctgggaattagaacatggacctccttgggCATGTGTGTGTTGGTGGGGGTATAAtttgtcttccgcaccaggatctgtccccgctgcaacaggggatgttattcaagtaattattcagttacttcctgtcttccttggtagacgtactcgggagaggagacacattttctgtcttgtgaactgtcgtttgccaagcacccagcctggcatggcgttcaaGTGTTCCGTGTCCCCCTCTTCTCCTTTCCCTCTCCCCATCTCACCCctggtctgggtgt-gggggtgcagctgtgagtagcacagacaggagccctgccccgtggcagggacattcttgttggggccgggtcgaggagacagtcaacaggtgaaatctgtcctgcgtctagcggtgctaagtcaacactaagaagaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54980083 936 +  59248254 acttgaaccagcgaggcagaggttacagtgaactgagattgcaccactgcactccagtctgggtgacagagcgagactccatctaaaagaaa-aaaacaaaacaaaacaaaat-aaaaaaacagtgcaggtttattatctgtggtcctgtaggtcaggagtctaaaataagtttcactaagttgaagtcagggtgtcagcccggagggttccttctaggggagtcaagggataatccattcccttgtc-tttccagcttctaggggtcactggcaccccttagctcatggccctccctctgtgtgcggagccagctgcatagcaccctcagagctctctctgaccctgcttctgtc-tcatatct-ggcctctgtttttgttcccc-cctctatgttaagggcccttgtggctatactgagcctactcagatggtccaggatagtcttcccagctcacaatccttaatatccttcttaatctcttcacgtcccttttgccctgtgaggtgacattcagaggttctgggaattagaacatggacctccttgggCATGTGTGTGTTGGTGGGGGTATAAtttgtcttccgcaccaggatctgtccccgctgcaacaggggatgttattcaagtaattattcagttactttctgtcttccttggtagacgtactcgggagaggagacacattttctgtcttgtgaactgtcgtttgccaagcacccagcctggcatggcgttcaaGTGTTCCGTGTCCCCCTCTTCTCCTTTCCCTCTCCCCATCTCACCCctggtctgggtgtggggggtgcagctgtgagtagcacagacaggagccctgccccgtggcagggacattcttgttggggccgggtcgaggagacagtcagcaggtgaaatctgtcctgcgtctagcggtgctaagtcaacactaagaagaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47096101 937 +  51301725 gcttgaaccagcgaggcagaggttacagtgaactgagattgcaccactgcactccagtctgggtgacagagcgagactccatctaaaaaaaacaaaacaaaacaaaacaaaat-aaaaaaacagtgcAGGTTTATTATCTGTGGTCCggtaggtcagaagtctaaaatgagTTTCACTGAGTTGAAGTCAGGGTGTCAGCCCGGAGGGTTCCTTCTGGGGGAGTGAAGGGATAATCCATTCCCTTGTC-TTTCCAGCTTCTAGGGGTCACTGGCACCCCTTAGCTCGTGGCCCTCCCTCTGTGTGCGGAGCCAGCTGCATAGCACCCTCAGACCTCTCTCTGACCCTGCTTCTGTC-TCATATCT-GGCCTCTGTTTTTGTTCCCC-CCTCTATTTTAAGGGCCCTTGTGGCTATACTGAGCCTACTCAGATGGTCCAGGATAGTCTTCCCAGCTCACAATCCTTAATATCCTTCTTAATCTCTTCACGTCCCTTTTGCCCTGTGAGGTGATATTCAGAGGTTCTGGGAATTAGAACATGGACCTCCTTGGgcatgtgtgtgttggtgggggtATAATTTGTCTTCCGCACCAGGATCTGTCCCCGCTGCAACAGGGGATGTTATTCAAGTAATTGTTCAGTTACTTTCTGTCTTCCTTGGTAGACGTACTCGGGAGAGGAGACACATTTTCTGTCTTGTGAACTGTCGTTTGCCAAGCACCCAGCCTGGCATGGCGTTCAGGTGTTCCCTGTCCccctcttctcctttccctctccccatctcacCCCTGGTCTGGGTGTGGGGGGTGCAGCTGTGAGTAGCACAGACAGGAGCCCTGCCCCGTGGCAGCGACATTCTTCTTGGGGCCGGGTCGAGGAGACAGTCAACAGGTGAAATCTGTCCTGCGTCTAGCGGTGCTAAGTCAAcaccaagaagaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46803882 928 +  50890351 gcttgaaccagcgaggcagaggttacagtgaactgagattgcaccactgcactccagtctgggtgacagagcgagactccgtctaa-------aaaacaaaacaaaacaaaataaaaaaaacagtgcaggtttattatctgtggtcctgtagatcagaagtccaaaatgagtttcactgagttgaagtcagggtgtcagcccggagggttccttctgggggagtcaagggataatccattcccttgtcttttccagcttctaggggtcactggcaccccttagctcgtggccctccctctgtgtgcggagccagctgcatagcaccctcagagctctctctgaccctgcttctgtc-tcatatct-ggcctctgtttttgttcccc-cctctatgttaagggcccttgtggctatactgagcctactcaggtggtccaggatagtcttcccagctcacaatccttaatatc---cttaatctcttcatgtcccttttgccctgtgaggtgacattgagaggttctgggaattagaacatggacctccttgggCATGTGTGTGTTGGTGGGGGTATAAtttgccttccgcaccaggatctgtccccgctccaacaggggatgttattcaagtaattattcagttactttctgtcttccttggtagacgtactcgggagaggagacacattttctgtcttgtgaactgtcatttgccaagcacccagcctggcatggcgttcaggtgttctgtGTCCCCCTCTTCTCCTTTCCCTCTCCCCATCTCACCcc-ggtctgggtgttgggggtgcagctgtgagtagcacagacaggagccctgccccgtggcagggacattcttgttggggccgggttgaggagacagtcaacaggtgaaatctgtcctgcgtctagcggtgctaagtcaacaccaagaagaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45377861 870 +  49145316 gcttagacccaggaggcagaggttgcagtgagctgagattccactattgcactccagcctaggtgacagagtgagactccatctaa-------a--------------------aaaaaaccagcacaggtttaccatct--------gtaggtcggaagtccaaaatgggtttcattgggctgaagtcagggtgtcagcccagaggcttccttctgggggact-----------------ccttgccttttccagctgctaggggtcgccggcatcccttagctcgtggcccttcttcc-tttgc-gagccagctgcgcggcaccctcagacctatctc--accctgcttctgtcttcagatcttggcctctgtctt----tccc-catctattttaagggcccttgtggctatactgagcctgctcacatggtccaggatagtcttccgagctcacactccttaaactc---cttaacctcttcacgtcccttttgccctg--aggtgacattcacaggttctgggagttagaacacggacctcctggggCATGTGTGTGTTGGTGGGGGCATAGtttgccttccgcaccaggatctgtcccc-ctccaacaggggatactattcaagtaattattcagttcacttctgtc-tccttggtagatgtactcgggagaggagacatgttttctgtcttgtgaactgttgcttgccaagcaccCCGCCTGGCTCGGCAATCAGGTGTTCCATCTCCCC--CTCCTCCTTTCCCTCTCTCCGTCTCACCCCCGGCctgggtgtagggaatgcagctgtgagtagcgcagaca-gagccctgtcccatggcgtggatactctcactggggccgggttg-ggagacagtccacaggggcaatctgtcctgtgcctagtaggactaggtaaacatcaagaagaaaaa
i calJac3.chr22             C 0 I 955
e mm10.chr7                   3637127 1444 + 145441459 I
e canFam3.chr1               19601678 930 - 122678785 I

a score=14287.000000
s hg38.chr19_GL949751v2_alt    102424 7 +   1002683 gaaaggg
s panTro4.chr19              59035928 5 +  63644993 gaa--gg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914042 7 +  60714840 gaaaggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102677556 7 - 106955855 gaaaggg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59963391 7 +  64156825 gaaaggg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54981019 7 +  59248254 gaaaggg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47097038 7 +  51301725 gaaaggg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46804810 7 +  50890351 gaaaggg
i chlSab2.chr6              C 0 I 1004
e mm10.chr7                   3637127 1444 + 145441459 I
e canFam3.chr1               19601678 930 - 122678785 I
e calJac3.chr22              45378731 955 +  49145316 I

a score=50743.000000
s hg38.chr19_GL949751v2_alt    102431 33 +   1002683 ggtggcggt--gaggcagcattaggtgctgattta
s panTro4.chr19              59035933 33 +  63644993 ggtggcggt--gaggcagcattaggtgctgattta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914049 33 +  60714840 ggtTGCGGT--GAGGCAACATTAGGTGCTGATTTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102677563 33 - 106955855 ggttggggt--ggggcgacatcaggtgctgattta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59963398 34 +  64156825 ggttggggt-gggggcgacattaggtgctgattta
i rheMac3.chr19             C 0 I 1088
s macFas5.chr19              54981026 34 +  59248254 ggttggggt-gggggcgacattaggtgctgattta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47097045 35 +  51301725 ggttggggtggggggcgACATTAGGTGCTGATTTA
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3637127 1444 + 145441459 I
e canFam3.chr1               19601678 930 - 122678785 I
e calJac3.chr22              45378731 955 +  49145316 I
e chlSab2.chr6               46804817 1004 +  50890351 I

a score=4687.000000
s hg38.chr19_GL949751v2_alt    102464 6 +   1002683 actaag
s panTro4.chr19              59035966 6 +  63644993 actaag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914082 6 +  60714840 ACTAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102677596 6 - 106955855 actggg
i nomLeu3.chr10             C 0 I 1118
s macFas5.chr19              54981060 6 +  59248254 cctggg
i macFas5.chr19             C 0 I 1349
s papAnu2.chr19              47097080 6 +  51301725 CCTGGG
i papAnu2.chr19             C 0 I 1246
e mm10.chr7                   3637127 1444 + 145441459 I
e canFam3.chr1               19601678 930 - 122678785 I
e calJac3.chr22              45378731 955 +  49145316 I
e chlSab2.chr6               46804817 1004 +  50890351 I
e rheMac3.chr19              59963432 1088 +  64156825 I

a score=6650.000000
s hg38.chr19_GL949751v2_alt    102470 26 +   1002683 gCACGTGGATACTCGGGGGGTCCGCT
s panTro4.chr19              59035972 26 +  63644993 gCACGTGGATACTCGGGGGGCCCACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914088 26 +  60714840 TCACGTGGATACTCGGGGGGCCCACT
i ponAbe2.chr19             C 0 C 0
e mm10.chr7                   3637127 1444 + 145441459 I
e canFam3.chr1               19601678 930 - 122678785 I
e calJac3.chr22              45378731 955 +  49145316 I
e nomLeu3.chr10             102677602 1118 - 106955855 I
e chlSab2.chr6               46804817 1004 +  50890351 I
e papAnu2.chr19              47097086 1246 +  51301725 I
e macFas5.chr19              54981066 1349 +  59248254 I
e rheMac3.chr19              59963432 1088 +  64156825 I

a score=3600.000000
s hg38.chr19_GL949751v2_alt    102496 1 +   1002683 C
s panTro4.chr19              59035998 1 +  63644993 C
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914114 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102678720 1 - 106955855 C
i nomLeu3.chr10             I 1118 C 0
s rheMac3.chr19              59964520 1 +  64156825 C
i rheMac3.chr19             I 1088 C 0
s macFas5.chr19              54982415 1 +  59248254 c
i macFas5.chr19             I 1349 C 0
s papAnu2.chr19              47098332 1 +  51301725 C
i papAnu2.chr19             I 1246 C 0
s chlSab2.chr6               46805821 1 +  50890351 C
i chlSab2.chr6              I 1004 C 0
s calJac3.chr22              45379686 1 +  49145316 C
i calJac3.chr22             I 955 C 0
e mm10.chr7                   3637127 1444 + 145441459 I
e canFam3.chr1               19601678 930 - 122678785 I

a score=141690.000000
s hg38.chr19_GL949751v2_alt    102497 46 +   1002683 AGAGGAGGCCTGGGTGGGCAGCCCACGCGAGCAGCTGCAGGACCTC
s panTro4.chr19              59035999 46 +  63644993 AGAGGAGGCCTGGGTGGGCAGCCCACGCGAGCAGCTGCAGGACCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914115 46 +  60714840 AGAGGAGGCCTGGGTGGGCAGCCCATGTGAGCAGCTGCAGGACCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102678721 46 - 106955855 AGAGGAGGCCTGTGTGGGCAGTCCACGTGAGCAGCTGCAGGACCTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59964521 46 +  64156825 AGAGGAGGTCTGGGTGGGCGGCGCACGTGAGCAGCTGCAGGACCTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54982416 46 +  59248254 agaggaGGTCTGGGTGGGCGGCGCACGTGAGCAGCTGCAGGACCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47098333 46 +  51301725 AGAGGAGGTCTGGGTGGGCGGCGCACGTGAGCAGCTGCAGGACCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46805822 46 +  50890351 AGAGGAGGCCTGGGTGGGCGGTGCACCTGAGCAGCTGCAGGACCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45379687 46 +  49145316 ACAGGAGGCCTGGGTGGGCAGCCCACGTGAGCAGCAGCAGGACCCA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3638571 43 + 145441459 AGATGTTGGCTGAGGGGACAGTTTACATGGCTGGCCACCG---CTT
i mm10.chr7                 I 1444 C 0
e canFam3.chr1               19601678 930 - 122678785 I

a score=1616979.000000
s hg38.chr19_GL949751v2_alt    102543 416 +   1002683 CCCCTC------GCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCGCCTGTGAAGCAGGTGAAGCCGCTGCCTGCGCCCCTGGATGGACAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGGGGCCCTGGGGGTCCGGTAGGCATGGGGGTCATGGAGGGGAGAAGCCGGCGTCCTCCTCCCAGCCGACTC-------CCTGGCGCCGCCCACCCAC-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACT---CCCAGAGCGC-----cctc--------ctcaaccccacagccagccagccgccaccgccctctgcctcctgccaccgccCCTCCTCTC-GTCCTGTGGCC
s panTro4.chr19              59036045 422 +  63644993 CCCCTCCCCCTTGCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCGCCCGTGAAGCAGGTGAAGCCGCTGCCTGCGCCCCTGGATGGACAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGGGGCCCTGGGGGTCCAGTAGGCATGGGGGTCATGGAGGGGAGAAGCTGGCGTCCTCCTCCCAGCTGACTC-------CCTGGCGCCGCCCACCCAC-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACT---CCCAGAGCGC-----CCTC--------CTCAACCCCACAGGCAGCCAGCCGCCACTGCCCTCTGCCTCCTGCCACCGTCCCTCCTCTC-GTCCCTTGGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914161 416 +  60714840 CCCCTC------GCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCGCCCGTGAAGCAGGTGAAGCCGCTGCCTGCGCCCCTGGATGGGCAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGGGGCCCTGGGGGTCCAGTAGGCATGGGGGTCACGGAGGGGAGAAGCCGGCGTCCTCCTCCCAGCTGACTC-------CCTGGCACCGCCCGCCCAC-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACAGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACT---CTCAGAGCGC-----CCTC--------CTCAACCCCACAGGCAGCCAGCCGCCACTGCCCTCTGCCTCCTGTCACCGTCCCTCCTCTC-GTCCTGTGGCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102678767 416 - 106955855 CCCCTC------GCCCTCCCTAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCGCCTGTGAAGCAGGTGAAGCCGCTGCCTGCGCCCCTGGATGGGCAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGGGGCCCTGGGGGTCCAGTAGGCATGGGGGTCATGGAGGGGAAAGGCCGGCGTCCTCCTCCCAGCTGACTC-------CCTGGCACCGCCCGCCCAC-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACAGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACT---CCCCCAGCGC-----CCTC--------CTCACCCCCACAGGCAGGCAGCCGCCACTGCCCTCTGCCTCCTGCCGCCGTCCCTCCTCTC-GTCCTGTGGCC
i nomLeu3.chr10             C 0 M 163
s rheMac3.chr19              59964567 415 +  64156825 CCCCTC------GCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTTGACAAGTGGCAGGAGCCCCCCCCCGTGAAGCAGGTGAAGCCACTGCCTGCGCCCCTGGATGGGCAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGAGGCCC-GGGGGTCCAGTAGGCGTGGGGGTCATGGAGGGGAGAGGCCAGCGTCCTCCTCCCAGCTGACTC-------CCTGGCACCGCCCGCCCAT-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACAGAGATCCGGAAGCAGGCCAACCGGATGAGTTTCGGAGAGGTCAGACT---CCCCCAGCGC-----CCTC--------CTCACCCCCACAGGCAGCCAGCCGCCACCGCCCTCTGCCTCCTGCCACCGTCCCTCCTCTC-GTCCTGTGGCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54982462 415 +  59248254 CCCCTC------GCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTCGACAAGTGGCAGGAGCCCCCCCCCGTGAAGCAGGTGAAGCCACTGCCTGCGCCCCTGGATGGGCAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGAGGCCC-GGGGGTCCAGTAGGCGTGGGGGTCATGGAGGGGAGAGGCCAGCGTCCTCCTCCCAGCTGACTC-------CCTGGCACCGCCCGCCCAT-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACAGAGATCCGGAAGCAGGCCAACCGGATGAGTTTCGGAGAGGTCAGACT---CCCCCAGCGC-----CCTC--------CTCACCCCCACAGGCAGCCAGCCGCCACCGCCCTCTGCCTCCTGCCACCGTCCCTCCTCTC-GTCCTGTGGCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47098379 417 +  51301725 CCCCTC------GCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAACGCAAATTTGACAAGTGGCAGGAGCCGCCCCCCGTGAAGCAGGTGAAGCCGCTGCCTGCGCCCCTGGATGGGCAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGGGGCCCTGGGGGTCCAGTAGGCGTGGGGGTCATGGAGGGGAGAGGCCGGCGTCCTCCTCCCAGCTGACTC-------CCTGGCACCGCCCGCCCACACCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACAGAGATCCGGAAGCAGGCCAACCGGATGAGTTTTGGAGAGGTCAGACT---CCCCCAGCGC-----CCTC--------CTCACCCCCACAGGCAGCCAGCCGCCACcgccctctgcctcctgccaccgtCCCTCCTCTC-GTCCTGTGGCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46805868 413 +  50890351 CCCCTC------GCCCTCCCCAGGTGGGCTACGAACTGAAGGATGAGATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCCCCCGTGAAGCAGGTGAAGCCGCTGCCTGCGCCCCTGGACGGGCAGCGGAAGAAGCGAGGCGGCCGCAGGTGAGGGGCCCTGGGGGTCCGGTAGGCATGGGGGTCATAGAGGGGAGAGGCCGGCG---TCCTCCCAGCTGACTC-------CTTGGCACCGCCTGCCCAC-CCGTCCCCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACAGAGATCCGGAAGCAGGCCAACCGGATGAGTTTTGGAGAGGTCAGACT---CCCCCAGCGC-----CCTC--------TTTACCCCCACAGGCAGCCAGCCGCCACCACCCTCTGCCTCCTGCCACTGTCCCTCCTCTC-GTCCTGTGGCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45379733 423 +  49145316 CCCCTTGCTCTCACCCTCCCTAGGTGGGCTACGAACTCAAGGACGAGATCGAGCGCAAGTTTGACAAGTGGCAGGAGCCGCCGCCTGTGAAGCAGGTGAAACCACTGCCTGCGCCCCTGGATGGGCAGCGGAAGAAGCGAGGTGGCCGCAGGTGAGAGCCCCTGGGGGTCCAGTAGGCATGGGGGTCGTGGAGTGGAGGAGCCGGTG---TCCCCCCAGCTGACTC-------CCTGGTACCGCCTGCCCAC-------CCAGGTACCGCAAGATGAAGGAGCGGCTGGGGCTGACCGAGATCCGGAAACAGGCTAACCGCATGAGCTTCGGAGAGGTTAGATG---CCCCTAGCGCTGAAGCCATGAGGAGAACTCACGGCCACAGG----CAGCCGCCGCCGCCCCCTGCCTCCCACCGCCTTCCCTCCTCTCTGCCCTGTGGCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3638614 405 + 145441459 CTCAAC-------TCCCCCCTAGGTGGGCTACGAACTAAAGGATGAGATTGAGCGCAAATTTGATAAGTGGCAGGAGCCACCACCCGTGAAGCAGGTGAAGCCCCTGCCTGCACCCCTTGATGGGCAGCGGAAGAAGCGAGGGGGCCGAAGGTAAGGAGTTCTGATGGGGCTAGACGTTTGGAAGTGGGGAAGGGAAACAACT-------TCTTCCCAGCCAGCTCCCTATATCCTGTTAACACCCACTTGC------CCTAGGTACCGCAAGATGAAGGAACGGCTAGGACTGACGGAGATCCGGAAGCAGGCCAACCGCATGAGCTTTGGAGAGGTCAGGCTTGATCCACAGTAC-----CAGT--------GGGACCATATTAGG---------GTCTTCTCTCTGCACATCCTGCTGCCATCCCTCCTCCCCACCCTGTAATC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19602608 349 - 122678785 CCCCCT------GCCCTCCCCAGGTGGGATATGAGCTGAAGGATGAAATCGAGCGCAAGTTTGACAAATGGCAGGAGCCGCCGCCCGTGAAGCAGGTGAAGCCCCTGCCTGCACCCCTGGACGGGCAGCGCAAGAAGCGAGGTGGCCGCAGGT---AGGCCCTGAGGG-CCAGTGGGGGTGAAG---AGGAGGGGAAGGGGCTTGTGAC-----CCCAGCTGAC-C-------CCTGGCGC------------CCCTCCCCAGGTACCGCAAGATGAAGGAGCGGCTAGGGCTGACCGAGATCCGGAAGCAGGCCAACCGCATGAGCTTCGGAGAGGTCAAA-----GCCTTAGTCT-----GGAT--------GTCCCCACCACA----------------------------------------TTTCTTCTC-GG-CTGAGGCA
i canFam3.chr1              I 930 C 0

a score=237876.000000
s hg38.chr19_GL949751v2_alt    102959 126 +   1002683 CTGGCTCATGTCTAGGGCGCTGCCCCAGCCTCCTCCC-----CCCCGGCCTCTATTCTCGTTTCCATCCATTCAGCCCCAAAGCGACCCTCGCGGCCCTTGGAGCCTGTGTCTCCGCTGCTTAGAGCCCCC
s panTro4.chr19              59036467 131 +  63644993 CTGGCTCATGTCTAGGGCGCTGTCCCAGCCTCCTCCCTCATCCCCCGGCCTCTATTCTCATTTCAATCCATTCAGCCCCAAAGTGACCCTTGCAACCCTCGGAGCCTGTGTCTCCGGTGCTTAGAACCCCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914577 129 +  60714840 CTGGCTCATGTCTAGGACACTGTCCCAGCCTCCTCCCTCATCCCCCGGCCTC--TTCTCGTGTCCATCCATTCAGCCCCAGAGTGACCCTTGTAACCTGCGGAGCCTGTGTCTCCGGCGCTTAGAGCCCCT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59964982 130 +  64156825 CTGGCTCATGTCTAGGGTGCTGTACCAGCCTCTTCCCTCATCCCCCAGCCTCTACTCTCATTTCCATCCATTCAGCCCCAAAGTGACCCTTGTAACCCTGGGAGCCTGTGTCTCCCGCGCTTAGAG-CCCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54982877 131 +  59248254 CTGGCTCATGTCTAGGGTGCTGTACCAGcctcttccctcatcccccagcctctactctcatttccatccattcagcccCAAAGTGACCCTTGTAACCCTGGGAGCCTGTGTCTCCCGCGCTTAGAGCCCCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47098796 131 +  51301725 CTGGCTCATGTCTAGGGTGCTGTCCCAGCCTCTTCCCTCATCCCCCAGCCTCTACTCTCATTTCCATCCATTCAGCCCCAAAGTGACCCTTGTAACCCTGGGAGCCTGTGTCTCCTGCGCTTAGAGCCCCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46806281 130 +  50890351 CTGGCTCATGTCTAGGGTGCTGTCCCAGCCTCTTCCCTCAT-CCCCAGCCTCTACTCTCATTTCTATCCATTCAGCCCCAAAGTGACCCTTGTAACCCTGGGAGCCTGTGTCTCCTGCGCTTAGAGCCCCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45380156  89 +  49145316 CTGGCTCATGTCTAGGGCACGA--------------------TCCTGGCCTCTACTCTGGTTTCTATCCATTCAGCCCCAAAGTGACCCTTGTCACC----------------------CTCAGAGTCCCT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3639019 109 + 145441459 TGAGAGCAGATCTGGGG--CTACCCAACCCTCCTCCCTCTT-GTCTAGCCTCTCCTCTTA-----AACCA-CCTTCTCCATGGTGATCTTTGCAGCTCTCAGCTGGCTGGCTTCCCAC-------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19602957  86 - 122678785 ----------------------------GCACCTCAC-----CTCCAGCCTC--CCCCCACATCCATGTA-----CCCTGAAGGGACCTATGCAGCATTCAG----TGTTGGCCCTGTCCCCCGACCCCC-
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102679183 163 - 106955855 M

a score=89498.000000
s hg38.chr19_GL949751v2_alt    103085 27 +   1002683 GCGGCTTCCCATCGCCCCGGGCTCCTT
s panTro4.chr19              59036598 27 +  63644993 GCAGCTTCCCATCGCCCCAGACTCCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914706 27 +  60714840 GCAGCTTCCCATTGCCCCAGGCTCCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102679346 27 - 106955855 GCAGCTTCCCATCGCCCCAGGCTCCTT
i nomLeu3.chr10             M 163 C 0
s rheMac3.chr19              59965112 27 +  64156825 GCAGCTTCCCATCGCCCCGGGCTCCTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54983008 27 +  59248254 GCAGCTTCCCATCGCCCCGGGCTCCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47098927 27 +  51301725 GCAGCTTCCCATCGCCCCAGGCTCCTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46806411 27 +  50890351 GCAGCTTCCCATTGCCCCAGGCTCCTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45380245 27 +  49145316 GCTGCTTCCCATCACCCCAGGCTCCTC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3639128 19 + 145441459 GCAGCT--------CTCCAGGCTGCTT
i mm10.chr7                 C 0 I 241
s canFam3.chr1               19603043 22 - 122678785 -----ACCCTTTTGTACACACCTCCCT
i canFam3.chr1              C 0 C 0

a score=487033.000000
s hg38.chr19_GL949751v2_alt    103112 174 +   1002683 GGCCGGTTCCTCCCTGCCCAGAGGCTCCTTAGTGCCCTGCTGCACGGCCGCCCCGTCCCTGGGCCCCGCCAGTCTCCTCTGTTATCCCAGCGTCAT-CCCCTTGGTCCTGCAGGACCGAACTCAGAGGCCACCTCATCCTATTAAACCTGTTCTGGTTCCTGACATCCCCCGACC
s panTro4.chr19              59036625 174 +  63644993 GGCCGGTTCCTCCCTGCCCAGAGGCTCCGCAGTGCCCTGCTGCACGGCCGCCCCGTCCCTGGGCCCCGCCAGTCTCCTCTGTTACCCCAGCGTCAT-CCCCTTGGTCCTGCAAGACCGAACTCAGAGGCCACCTCATCCTATTAAACCTGTTCTGGTTCCTGGCATCCCCCGACC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914733 174 +  60714840 GGCCTGTTCCTCCCTGCCCAGAGGCTCCGCAGTGCCCTGCTGCACGGCCGCCCCGTCCCTGGGCCCTGCCAGTCTCCTCTGTTATCCCAGCGTCAT-CCCTTTGGTCCTGCAAGACCGAACTCAGAGGCCACTTCATCCTATTAAACCTCTTCTGGTTCCTGACATCCCCCAACC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102679373 168 - 106955855 TGCCGGT--CTCCCTG-CCAGAGGCTCCGCGGTGACCTGCTGCACTGCCG-CCCGTCCCTGGG-CCTGCCAGTCTCCTCTGTTATCCCAGCATCAT-CCCCTTGGT-CTGCAAGACCCAATTCAGAGGCCATCTCATCCTATGAAACCTATTCTGGTTCCTGACACCCCCCAACC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59965139 173 +  64156825 GGCTGGTTCCTCCCTGCCCAGAGGCTCCGCAGTGCCCTGCTGCACCGCCG-CCCGTTCCCGGGCCCCGCCAGTCtcccctgttatcccaacgtcat-ccccttggtcctgcaagacccaactcagaggccacctcatcctatgaaacctgttctggttccTGACACCCCCCAATC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54983035 174 +  59248254 GGCTGGTTCCTCCCTGCCCAGAGGCTCCGCAGTGCCCTGCTGCACCGCCGCCCCGTTCCCGGGCCCCGCCAGTCTCCTCTGTTATCCCAACGTCAt-ccccttggtcctgcaagacccaactcagaggccacctcatcctatgaaacctgttctggttccTGACACCCCCCAATC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47098954 175 +  51301725 GGCCGGTTCCTCCCTGCCCAGAGGCTCTGCAGTGCCCTGCTGCATGGCCGCCCCGTTCCTGGGCCCCGCCAGTCTCCTCTGTTATCCCAACATCATCCCCCTTGGTCCCGCAAGACCCAACTCAGAGGCCACCTCATCCTATGAAACCTGTTCTGGTTCCTGACACCCCCCAATC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46806438 174 +  50890351 GGCCGGTTCCTCCCTGCCCAGAGGCTCTGCAGTGCCCTGCTGCATGGCCGCCCCGTTCCTGGGCCCCGCCAGTCTCCTCTGTTATCCCAACGTCAT-CCCCTTGGTCCTGCAAGACCCAACTCAGAGGCCACCTCATCCTATGAAACCTGTTCTGGTTCCTCACACCCCCCAATC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45380272 150 +  49145316 GGCCAGTTTCTCC-------------------TGCCCT-CTGCACGGCCCCTCCCTCCGTGAGCCCC----GTCTCCTCCGTTATCCCAGTGTCAT-CCCCTTGGTCCTGCAAGACCCAGCTCAGAGGCCACCTCATCCTGTGGAACCTGTTCTGGTTCCAGACACCCCCCAACC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19603065 145 - 122678785 -GTCGGGTTGGATCTGCCCAGGG-------AGGGTCCTTCCTCA-GGCTTCACC----------TCTGCCAGACTC----ATTACCCAAGCATCAT-CCTCATGGTCCTGCAAGAACCAGCTCAAACACCCTCTAGTCA-GCAAGCCCAGTTTTGGTTGTTGACACTGCA-----
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3639147 241 + 145441459 I

a score=4046664.000000
s hg38.chr19_GL949751v2_alt    103286 1248 +   1002683 CACACGAGTAAGGAAGGAATGGCCTCCCAACTCTGAGCTCACAGAGCAGTGCTGGGACCGGGCCCCTCTCAGGCTCCCCGGCATCCCCCGCGTGTGTGGGCCCCCAGGCCTCAGCCGGGCCGAGTGGGTACCGGAGCAGGTGCCCGTGGGACCGGCCGGCTGGTGACCGCTGGGCTTCCGGCTGGTGGAGGGGGTGCCTCGGTGG-CTGGAGGGCAGGGCCTGGTCGCTGAACTGCAGGGCGCCTCCTCTTCCCCCTAGATCGAGGAGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGTGTGCGGCAGACACAGGTAAACGAGGCCACCAAGGCCAGGATCTCCAAGACGCTGCAGGTATGGGCCAGACCCAGGTGGGGCTGGGGACCGA--GGGACACAAGGTGGGGGGAGCCCAGATC--------GCAGCCT---CCCTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGCGTCGTATATGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTCCCCTGGGccggctctgtccccagccct-----gagaccttggcaaggccccttgccctctgcccctgtgaagaaggccaggatgagtctcctcatggggctgttgtggagggtgtggtg-----acgaggtat-gcagagga-cgtaga-cagctcctggcacacaggaa------gaggttagcagaGACGAGAGCCCAGCGCTGAGCAGTC--CTCGTGAGCACGCACTG-CTTTAGAACCAGGCCCACAGCTGTGTTCAGGGCACCCAGTTCCTCTGTC--GGGCTGTGAGCGGGTA--ACACTGCTCAGCCTCCAGGCCCTCCAGTTCAAAACGGCCAGGACGGTTAAGGTAACCTCAGGACCCCACTCGAGAAAGTTCCCGGCTAGGCGGGCTTGGATGTCAAGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGCAGCGTGGAGCATGGCAGTCACCGCATC-GTCGGAGCCTCGGTT----TACCATCCACAGAGCAGGGCGAGCCTGCACCACGGAG--GCGAG-ACAGCAGC-GAGCTCATCTGCCcagtcagcgggtgtctacgcagcacctgctgagttctgtcagtgttcccggctctggggatgaagcaacga--atgag--agacaagtcttaccttcttggagccagt-gggtggccgggcgcagacagctcagtaagatgtccagtgtagg
s panTro4.chr19              59036799 1248 +  63644993 CACACGAGTAAGGAAGGAATGGCCTCCCAACTCTGAGCTCACAGGGCAGTGCTAGGACCGGGCCCCTCTCAGGCTCCCCAGCATCCCCCGCTTGTGTGGGCCCCCAGGCCTCAGCCGGGCCGAGTGGGTACCGGAGCAGGTGCCCGTGGGACCGGCCGGCTGGTGACCGCTGGGCTTCCGGCTGCTGGAGGGGGTGCCTCGGTGG-CTGGAGGGCAGGGCCTGGTCGCTGAACTGCAGGGCGCCTCCTCTTCCCCCTAGATCGAGGAGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGTGTGCGGCAGACGCAGGTAAACGAGGCCACCAAGGCCAGGATCTCCAAGACGCTGCAGGTATGGGCCAGACCCAGGTGGGGCTGGGGACCGA--GGGACACAAGGTCGGGGGAGCCCAGATC--------GCAGCCT---CCCTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGCGTCGTGTATGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTCCCCTGGGccggctctgtcctcagccct-----gagaccttggcaaggccccttgccctctgcccctgtgaagaaggccaggataagtctcctcagggggctgttgtggagggtgtggtg-----acgaggtat-gcggagga-cgtaga-cagctcctggcacacaggaa------gaggttagcagaGACGAGAGGCCAGCGCTGAGCAGTC--CTCGTGAGCACGCACTG-CTTCAGAACCAGGCCCACAGCTGTGTTCAGGGCACCCAGTTCCTCTGTC--GGGCTGTGAGCGGGTT--ACACTGCTCAGCCTCCAGGCCCTCCAGTTCAAAATGGCCAGGACGGTTAAGGTAACCTCAGGACCCCACTCGAGAAGGTTCCCGGCTAGGCGGGCTTGGATGTCAAGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGCAGCGTGGAGCGTGGCAGTCACCGCATC-GTCGGAGCCTCGGTT----TACCATCCACAGAGCAGGGCGAGCCTGCACCATGGGG--GCGAG-ACAGCAGC-GAGCTCATCTGCCcagtcagcgggtgtctacgcagcacctgctgagttccatcggtgtccccggctctggggatgaagcgacga--atgag--agacaagtcttaccttcttggagccagt-gggtggccgggcacagacagctcagtaagatgtccagtgtagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55914907 1250 +  60714840 CACACAAGTAAGGAAGGAATGGCCTCTCAACTCTGAGCTCACAGAGCAGTGCTAGGACCGGGCCCCTCTCAGGCTCTCCAGCATACCCCGCTTGTGGGGGCCCCCAGGCCTCAGCCGGGCTGAGTGGGTACCTGAGCAGGTGCCCGTGGGACCAGCCGGCTGGTGACCGCTGGGCTTCCGGCTGGTGGAGGGGATGCCTCGGTGG-CTGGAGGGCAGGGCCTGGTCGCTGAACTGCAGGGCGCCTCCCCTTCTCCCTAGATCGAGGAGGATGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGTGTGCGGCAGACGCAGGTAAACGAGGCCACCAAGGCCAGGATCTCCAAGACGCTGCAGGTATGGGCCAGAACCAGGTGGGGCTGGGGACCAA--GGGACACAAGGTTGGGGGAGCCCAGATC--------GCAGCCT---CCCTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGCGTCGTGTACGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTCCCCTGGGctggctctgtccctggcccc-----gagaccttggcaaggccccttgccctctgcccctgtgaagcaggccaggatgagtcccctcacggggctgttgtggagggtgtggtg-----acgaggtat-gcagagga-cgtagg-cagctcctggcacacaggaa------gaggttagcagaGACGAGAGGCCAGCGCTGAGCAGTC--CTCGTGAGCACGGACCG-CTTTAGAACCAGGCCCACAGCTGTGTCCAGGGTGCCCATTTCCTCTCTCTGGGGCCTTGAGCGGGTT--ACAGTGCTCAGCCTCCAGGCCCTCCAGTTCAAAATGGCCAGGACGGTTAAGGTAACCTCAGGACCCCACTCAAGAAAGTTCCTGGCTAGGTGGGCTTGGATGTCACGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGCAGCGTGGAGCATGGCAGTCACCGCATC-GTCGGTGCCTCGGTT----CACCATCCACAGAGCAGGGCCAGCCTGCACCATGGGG--GCGAG-ACAGCAGC-CAGCTCatttgctgagtcagcgggtgtctatgcagcacctactgagttctatcggtgttgccggctctggggatgaagcgatga--atgag--agacaagtcttaccttcatgcagccagt-gggtggccgggcacagacagctcagtaagatgtccagtgtagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102679541 1250 - 106955855 CACACGACTAAGGAAGGAATGGCCTCTCAACTCTGAGCTCACAGAGCAATGCTCGGACCGGGCCCCTCTCAGGCTCCCCAGCATCCCCCGCTTGTGGGGGCCCCCAGGCCTCAGCCGGGCCGAGTGGGTACCTGAGCAGGTGCCCATGGGACCAGCCGGCTGGTGACCGCTGGGCTTCCGGCTGCTGGAGGGGGTGCCTCGGTGG-CTGGAGGGCAGGGCCTGGTCGCTGAACTGCAGGGCGCTTCCCCTTCCCCCTAGATCGAGGAGGACGCCTACCAGGAGGATCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGCGTGCGGCAGACGCAGGTAAACGAGGCCACCAAGGCCAGGATCTCCAAGACGCTGCAGGTATGGGCCAGACCCAGGTGGGGCTGGGGACCGA--GGGACACAAGGTGGGGGGAGTCCAGATC--------GCAGCCT---CCTTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGTGTCGTGTACGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA-----------------------CTCCCCTGGGCCGGCTCTGTCCCCAACCC------GAGACCTCCGCAAGGCCCCTTGCCCTCTGCCC--GTGAAGCAGGCCAGGATGAGTCCCCTCACGGGACTGTTGGGGAGGGTGTGGTG-----ACGAGGTAC-GCAGAGGA-CGTAGA-CAGCTCCTGGCACACAGGAA------GAGGTTGGCAGAGACgaggggccagcgctgagcagtc--cccatgagcacggacca-ctttagaaccaggcccacagctgtgttcagggcacccagctcctctctgtggggccatgagcgggttacacactgctcagcctccaggccctccagttcaaaatggCCAGGGCGGTTAAGGTAACCTCAGGACCCCATTCGAGAAAGTTCCCGGCTAAGTGGGCGTGGATGTCACGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGCAGCGTGGAGCATGGCAGTCACCGCATC-GTCAGTGCCTCAGTT----TACCATCCACAGAGCAGGGCGAGCCTGCACCATGGGG--GCGAG-ACAGCAGC-GAGCTCatttcctcagtcaacgggtgtctgtgcagcacctactgagttccatcggtgttctcggctctggggatgaggcgatga--atgagacagccaagtcttagcttcatggagccagt-gggtggccgggcatagacagctcagtaagatgtccagtgtagt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59965312 1246 +  64156825 CACACGAGGAAGGAAGGAATGGCCTCTCGACTC--AGCTCACAGAGCAGTGCTAGGACCCGGCCCCTCTCAGGCTCCCCAGCATCCCCCGCTTGTGGGGGCCCTCAGGCCTCAGCCGGGCCAAGTGGGTACCTGAGCAGGTGCCCGTGGGACCAGCCGGCTGGTGACTGCTAGGCTTCCAGCTGGTCGAGGGGGTGCCTCAGTGG-CTGGAGGGCAGGGCCTGGTCACTGAATTGCAGGGTGCCTCCCCTTCCTCCTAGATTGAGGAGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGCGTGCGGCAGACGCAGGTCAACGAGGCCACCAAGGCGAGGATCTCCAAGACGCTGCAGGTATGGGCCAGACCTGGGTGGGGCTGGGGACCGA----GACACAGGGTGGGGGGAGCCCAGATC--------GCAGCCT---CCCTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGCGTTGTGTACGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTGCCCTGGGCCGGCTCTGTCCCCAGCCCC-----AACACCTTGGCAAGGCCCCTTGCCCTCTGCCCCTGTGAAGCC-GCCAGGATGAGTCCCCTCACGGGGCTGTCGTGGAGGGCGTGGTG-----ACGAGGTAT-TCAGAGGA-CGTAGA-CAGCTCCTGGCACACAGGAA------GAAGTTAGCAGAGACGAGAGGCCAGTGCTGAGCAGTC--CTCATGAGCACGGACCG-CTTTAGAACCAGGCCCACAGCTGTGTCCAGGGCATCCAGTTCCTCTCTGTGGGGCTGTGAGCTGGTT--ACACTGCTCAGCCTCCAGGCCTTCCAGTTGAAAATGGCCAGGGCGGTTAAGGTAACCTCAGGACCCCACTTGAGAAAGTTCCCGGCTAGGTGAGCTTGGATGTCACGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGTGGCGTGGAGCATGGCAGTCACCGCATC-GTCGGAGCCTCGGTT----TACCATCCACAGAGCAGGGCGAGCCTGCA-CGTGGGG--CCAAG-ACAGCAGC-GAGCTCatttgctcagtccgcggatgtctgtggagcacctactgagttccatcggtgttcccagctctggggatgaagcgatga--atgagagagacaagtcttaccttcagggagccagt-gggtggccgggcacagacagctcagtaggatgtctaatgtagt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54983209 1247 +  59248254 CACACAAGGAAGGAAGGAATGGCCTCTCGACTC--AGCTCACAGAGCAGTGCTAGGACCCAGCCCCTCTCAGGCTCCCCAGCATCCCCCGCTTGTGGGGGCCCTCAGGCCTCAGCCGGGCCAAGTGGGTACCTGAGCAGGTGCCCGTGGGACCAGCCGGCTGGTGACTGCTAGGCTTCCAGCTGGTCGAGGGGGTGCCTCAGTGG-CTGGAGGGCAGGGCCTGGTCACTGAATTGCAGGGTGCCTCCCCTTCCTCCTAGATTGAGGAGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGCGTGCGGCAGACGCAGGTCAACGAGGCCACCAAGGCGAGGATCTCCAAGACGCTGCAGGTATGGGCCAGACCTGGGTGGGGCTGGGGACCGA----GACACAGGGTGGGGGGAGCCCAGATC--------GCAGCCT---CCCTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGCGTTGTGTACGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTGCCCTGGGCCGGCTCTGTCCCCAGCCCC-----AACACCTTGGCAAGGCCCCTTGCCCTCTGCCCCTGTGAAGCCGGCCAGGATGAGTCCCCTCACGGGGCTGTCGTGGAGGGCGTGGTG-----ACGAGGTAT-TCAGAGGA-CGTAGA-CAGCTCCTGGCACACAGGAA------GAAGTTAGCAGAGACGAGAGGCCAGTGCTGAGCAGTC--CTCATGAGCACGGACCG-CTTTAGAACCAGGCCCACAGCTGTGTCCAGGGCATCCAGTTCCTCTCTGTGGGGCTGTGAGCTGGTT--ACACTGCTCAGCCTCCAGGCCTTCCAGTTGAAAATGGCCAGGGCGGTTAAGGTAACCTCAGGACCCCACTCGAGAAAGTTCCCGGCTAGGTGAGCTTGGATGTCACGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGTGGCGTGGAGCATGGCAGTCACCGCATC-GTCGGAGCCTCGGTT----TACCATCCACAGAGCAGGGCGAGCCTGCA-CGTGGGG--CTGAG-ACAGCAGC-GAGCTCatttgctcagtccgcggatgtctgtggagcacctactgagttccatcggtgttcccagctctgggaatgaagcgatga--atgagagagacaagtcttaccttcagggagccagt-gggtggccgggcacagacagctcagtaggatgtctaatgtagt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47099129 1244 +  51301725 CACacgaggaaggaaggaatggccTCTTGACTC--AGCTCACAGAGCAGTGCTAGGACCCGGCCCCTCTCAGGCTCCCCAGCATCCCCCGCTTGTGGGGGCCCTCAGGCCTCAGCCGGGCCAAGTGGGTACCTGAGCAGGTGCCCGTGGGACCAGCCGGCTGGTGACTGCTGGGCTTCCAGCTGGCCGAGGGGGTGCCTCAGTGG-GTGGAGGGCAGGGCGTGGTCACTGAACTGCAGGGTGCCTCCCCTTCCTCCTAGATTGAGGAGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGCGTGCGGCAGACGCAGGTCAACGAGGCCACCAAGGCGAGGATCTCCAAGACGCTGCAGGTATGGG-CAGacctgggtggggctggggaccGA----GACACAGGGTGGGGGGAGCCCAGATC--------GCAGCCT---CCCTGTCCTCCCCACAGCGGACCCTGCAGAAGCAGAGCGTCGTGTACGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTGTCCTGGGCCGG--CTGTCCCCAGCCCC-----AAGACCTTGGCAAGGCCCCTTGCCCTCTGCCCCTGTGAAGCCGGCCAGGATGAGTCCCCTCACAGGGCTGTCGTGGAGGGCGTGGTG-----ACGAGGTAT-TCAGAGGA-CGTAGA-CAGCTCCTGGCACACAGGAA------GAGGTCAGCAGAGACGAGAGGCCAGTGCTGAGCAGTC--CTCGTGAGCACGCACCG-CTTTAGAACCAGGCCCACGGCTGTGTCCAGGGCATCCAGTTCCTCTCTGTGGGGCCGTGAGCTGGTT--ACACTGCTCAGCCTCCAGGCCTTCCAGTTCAAAATGGCCAGGGCGGTTAAGGTAACCTCAGGACCCCACTCAAGAAAGTTCCCGGCTAGGTGGGCTTGGATGTCACGTGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGTGGCGTGGAGCATGGCAGTCACCGCATC-GTCGGAGCCTCGGTT----TACCATCCACAGAGCAGGGCGAGCCTGCA-CATGGGG--GCGAG-ACAGCAGC-GAGCTCATTTGCTCAGTCCGTGGATGTCTGTGGAGCACCTACTGAGTTCCATCGGTGTTCCCAGCTCTGGGGATGAAGCGATGA--ATGAGAGAGACAAGTCTTACCTTCAGGGAGCCAGT-GGGTGGCCGGGCACAGACAGCTCAGTAGGATGTCCAATGTAGT
i papAnu2.chr19             C 0 T 39
s chlSab2.chr6               46806612 1238 +  50890351 CACACAAGTAAGGAAGGAATGGCCTCTCGACTC--AGCTCACAGAGCAGTGCTAGGACCTGGCCCCTCTCAGGCTCCCCAGCATCCCCCGCTTGTGGGGGCCCTCAGGCCTCAGCCGGGCCAAGTGGGTACCTAAGCAGGTACCCGTGGGACCAGCCGGCTGGTGACTGCTAGGCTTCCAGCTGGTCAAGGGGGTGCCTCAGTGG-CTGGAGGGCAGGACCTGGTCACTGAACTGCAGGGTGCCTCCCCTTCCTCCTAGATTGAGGAGGACGCCTACCAGGAGGATCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGCGTGCGGCAGACGCAGGTCAACGAGGCCACCAAGGCGAGGATCTCCAAGACACTGCAGGTATGGGCCAGACCTGGGTGGGGCTGGGGACCGA----GACACAGGGTGGGGGAAGCCCAGATC--------GCAGCCT---CTCTGTCCTCCCCACAGCGGACCCTGCAGAAACAGAGCGTCGTGTACGGCGGGAAGTCCACCATCCGCGACCGCTCCTCGGGCACGGCCTCCAGCGTGGCCTTCACCCCACTCCAGGTA----------------------CCTCCCCTGGGCCGGCTCTGTCCCCAGCCCC-----GAGACCTTGGCAAGGCCCCTTGCCCTCTGCCCCTGTGAAGCAGGCCAGGATGAGTCCcctcacggggctgttgtggagggcgtggtg-----acgaggtat-tcagagga-cataga-cagctcctggcacacaggaa------gaggttagcagaGACGAGAGGCCAGTGCTGAGCAGTC--CTCGTGAGCACAGACCG-CTTTAGAACCAGGCCCACGGCTGTGTCCAGGGCATCCAGTTCCTGTCTGTGGGGCCGTGAGCTGGTT--ACACTGCTCAGCCTCCAGGCCTTCCCGTTCAGAATGGCCAGGGCGGTTAAGGTAACCTCAGG-------------AAGTTCCCGGCTAGGTGGGCTTGGATGTCACATGTGGGTCCAGGCCCCAG-CCAGTCAGCAGTGAGTGGCGTGGAGCATGGCAGTCACCGCATT-GTCGGAGCCTCAGTTTACCTACCATCCACAGAGCAGGGCGAGCCTGCA-CGTGGGG--GCGAG-ACAGCAGC-GAGCTCATGTGCtcagtccgcggatgtctgtggagcacctactgacttccatcggtgttcccagctctggggatgaagtgatga--atgagagagacaagtcttaccttcagggagccagt-gggtggccgggcacagacagctcagtaggatgtccaatgtagt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45380422 1201 +  49145316 CACATGCATAAGGAA-----GGCCTCTCAACTCTGAGCTCACAGAGCAGCGCCGGGACCCAGCCCCTTTCAGGCTCCCCAGCATCCCCGGCTTGTAGGGGCCCCCAGGCCTCAGCTGGGCCGAGTGGGTACCCGAGCAGGTGCCCATGGGGCCAGCCAGCTGGTGACCGCGGGGCTTCTAGCTGGTGGAGGGGGTGCCTGAGTGG-CTGGAGGGCGGGGTCTGGTCCCTG-ACGGCAGGG-GCTTCCCTTTCCCCCTAGATCGAGGAGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCACCTGGGCAAGTCGGGCAGTGGGCGCGTGCGGCAGACACAGGTCAACGAGGCCACCAAGGCCAGGATCTCCAAGACGCTGCAGGTATGTGCC-GACCTGGGTGGGGCCAGGGACCGA--GGGACGCAAGGTAGGGTGAGCCCAGATA--------ACAGCCT---CCCTGTCCTTCCCACAGCGGACCCTGCAGAAGCAGAGCGTGGTATATGGCGGGAAGTCCACCATCCGCGACCGCTCGTCGGGCACGGCCTCCAGCGTGGCTTTCACCCCACTCCAGGTA----------------------CTTGCCCTGGGCCAGCTCTGTCCCCAGCCCC-----AAGATGCTGGCAAGGCCCCTTGCCCTCTGCCCctgtgaa-caggccacaatgagtccccttacagggctgtcacggggggtgtggtg-----a--agacat-gccaaagg-catcgg-cagcccctggcacacagcaagtgctcgaGGTTAGCAGAGACGAGAGGC----GCACAACAGTC--CTCATGAGCGGGGACCG------------------GGGCTACATCCCAGGGACCCTGTTTTTCTCTGTGGGGCCATGAACGGGTT--ACATTGCTCAGCCTCTAGGACCT-CAGTTTGAAATGGCTAGAGTGGTTAAGGTAACCTCAGGACCCCACTCGAAACAGTTCCCAGCTAGGTGGGCTTGGGTGTCACGTGTGGGTCTGGCCCCCAGCCCAGTCAGCAGTGAGTGGCTTGGAGCACGGCAGTCACCGCACC-ATCGGCACCGCGGTT----TGCCATCCACAGAGCAGGGCGAGCCTGCACCGTGGCT--GTGGG-ACAGTGGG-GAGCTCATCTGCTCAGACAGCGG-------------------------CTGTCGGtgctctcggctctgggggtgaagcggtga--atgagagagacaagtcttgccttcctggagcctgt-gggtggctgggcacagacagatcagtaagatgcccagtgtggt
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3639388  999 + 145441459 CATACTGCTAAGGATG--ATGGACTCT--------GGCCAATAGGGTAG------------GCTCTTATTAGGTCACTTAAT-----------------GCTGCCAGTCC----CCTGGCTGA---------TGAGGTGGTGTCCATGAGACTGGCTGATTG----------GGTTCTCAGGTGAC--------TGCCTCAGGGGACTGGCTGGATGTACCCAGCTTCTTAACCGCAGGTTGCT--CTCGTCTCACCAGATTGAGGAGGATGCCTATCAGGAAGACCTGGGCTTTAGCCTGGGCCACTTGGGCAAGTCAGGCAGTGGGCGTGTGCGGCAGACCCAGGTGAATGAGGCCACCAAGGCCAGGATCTCCAAGACACTGCAGGTATGGATTGGGCCCA--TGAGAATGGGAGGCAGGTGGGATATGGAGGTCAGTGAGCCTGGATC--------CCAGCCT---CCCCTT--TCCCTACAGCGGACCTTACAGAAACAGAGCGTGGTGTATGGTGGGAAGTCAACAATTCGTGACCGCTCCTCAGGGACTGCCTCCAGTGTGGCCTTCACTCCACTCCAGGTA----------------------CC----------------------------------------------ATACCCTTT----TCTACC---------------------AGGCATATGATAAGGCTGCTGTGGAGATC----TG-----TTGAGATATAGCACATGAGCTTAGG-CATCCACAACCACACAGTAA------GTGCCTAACAG------TTGGCCA-----TGACAGTT--GTGACAAACTCAGACCAACTTTGGAACCAGGACTAGGATGCTGCCCACGTGATCCAGATACTCTCT---------------------GAACTTCCTAGTCTT---------TGTTTAAAAATAGTCCCG-TAGTCAGGATGCCATCAGG---------------------------GTGGGCTTGAGTATCACAG--------------CAG-CCCAGCGGCACTGAGCAGTGTGGAGCAGAATGG------------------CCTCAGGT----TACTTACCACAGAGATAGGCAAGTACGCCCCATAATGTCTCAAG-GAACCAAA-GAGCTCCCTAGCTTG--CCacaagtgcctactgagcacctgc------ccacca-tgttccaggctttgggcatagag--------acaaaagagacaagctttgcttttgtgggg--aga-aggttggggagcacagatgattgagtctagtacacaatgtatt
i mm10.chr7                 I 241 C 0
s canFam3.chr1               19603210 1094 - 122678785 TACATGAACACTCACAGCTT---CCCTCAACTGTCAGCTCAGGGAGCCGTAATAGGACTGGACTCCTCACTGGGCCCC--------------------------------------------AGCAGGCACCTGAATCGG------------------GTCAGTGCCTG--GGGCATCCGGCTGATGAAAG----------ATGG-CT----------------------AACTCTTGGTTACCTTCCCCTCCCACCAGATCGAGGAAGACGCCTACCAAGAGGACCTGGGCTTCAGCCTGGGCCATCTGGGCAAATCAGGCAGCGGGCGGGTACGGCAGACACAGGTGAACGAGGCCACCAAAGCCAGGATCTCTAAGACACTGCAGGTACAGGCGGGGCCTGAGTGGGCCTGGGAGTCTG--GGAGCTCCAG--CAGGAGAGCCCAAGCCAAGCCCAAACATCCTGTCCCCTCCCCTCCACACAGCGGACCCTGCAGAAGCAGAGTGTCGTGTATGGCGGGAAGTCCACCATCCGTGACCGCTCCTCGGGGACTGCTTCCAGTGTGGCTTTCACCCCTTTGCAGGTACTGTGCACCTgagtcaggaggcccagttctgggcaggctctactcccagctttctgagtggacctgggcaagcccctt-----------------------------------cctctcgcagggcTGTTGTGGACAGCCTTGTGTATCAGTGAAGCCC-CTGAAAGG-TACAGCTCAGTTCCTGGTGCTCAGGCT------AGTGGGAGCAGAAGGGAAAAG-------------GTCTGCCTGCAAGTGCAGGCTGGCTTTAGGATCGGGC------TGGGACTAGGGGTGACTACTGATTCCCCA--TGACCTCAAGTGGGCT----------CAGCTCCT---CCCTGAGGTGCTAAGTGGCTGGGAC---------AACCTCAGGGCTCCACGGAAGAAAACTCAAAGGTAG------CTGGCTGGGAAGCAGAGGTCCCAGCC-CAG-CCACTCA----TGCACAGGACAGAGC--------CTCTGCATCTGTCCATTTCTCAGCC----TAC---CCACAGA-TAGCGCCAGCACGCCCCATAGCA--TCGAGTAGAATAACTGAGTTCATTGGCAACAtcagcaagggtgtactgagcaccta--agtttcaggtgctgttgcaggcactggggatagagccacaagcacaagacag-caagccttgccctcagggagcttgtggggtggcaggggtcaga--------taagatatggagcctggt
i canFam3.chr1              C 0 C 0

a score=6561.000000
s hg38.chr19_GL949751v2_alt    104534 9 +   1002683 agaaggcag
s panTro4.chr19              59038047 9 +  63644993 agaaggcag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55916157 9 +  60714840 aaaaggcgc
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45381623 9 +  49145316 aaaaggcag
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3640387 9 + 145441459 agaagacac
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19604304 9 - 122678785 ggaaagtgg
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102680791 0 - 106955855 C
e chlSab2.chr6               46807850 0 +  50890351 C
e papAnu2.chr19              47100373 39 +  51301725 T
e macFas5.chr19              54984456 0 +  59248254 C
e rheMac3.chr19              59966558 0 +  64156825 C

a score=2755.000000
s hg38.chr19_GL949751v2_alt    104543 8 +   1002683 -aaatgcca
s panTro4.chr19              59038056 8 +  63644993 -aaatgcca
i panTro4.chr19             C 0 C 0
s calJac3.chr22              45381632 8 +  49145316 -aaatacca
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3640396 8 + 145441459 -aggtgcca
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19604313 8 - 122678785 aaagtgca-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55916166 0 +  60714840 C
e nomLeu3.chr10             102680791 0 - 106955855 C
e chlSab2.chr6               46807850 0 +  50890351 C
e papAnu2.chr19              47100373 39 +  51301725 T
e macFas5.chr19              54984456 0 +  59248254 C
e rheMac3.chr19              59966558 0 +  64156825 C

a score=3000.000000
s hg38.chr19_GL949751v2_alt    104551 2 +   1002683 GG
s panTro4.chr19              59038064 2 +  63644993 GG
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100334 2 +  51301725 GG
i papAnu2.chr19             T 39 C 0
s calJac3.chr22              45381640 2 +  49145316 gg
i calJac3.chr22             C 0 I 489
s mm10.chr7                   3640404 2 + 145441459 gg
i mm10.chr7                 C 0 I 5
s canFam3.chr1               19604321 2 - 122678785 gg
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55916166 0 +  60714840 C
e nomLeu3.chr10             102680791 0 - 106955855 C
e chlSab2.chr6               46807850 0 +  50890351 C
e macFas5.chr19              54984456 0 +  59248254 C
e rheMac3.chr19              59966558 0 +  64156825 C

a score=5928.000000
s hg38.chr19_GL949751v2_alt    104553 14 +   1002683 CCGGGCGCAGACAG
s panTro4.chr19              59038066 14 +  63644993 CCGGGCGCAGACAG
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100336 14 +  51301725 CCGGGCACAGACAG
i papAnu2.chr19             C 0 C 0
s mm10.chr7                   3640411 14 + 145441459 gcaggcgtggacgg
i mm10.chr7                 I 5 I 50
s canFam3.chr1               19604323  8 - 122678785 ------gaagaaag
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=9882.000000
s hg38.chr19_GL949751v2_alt    104567 42 +   1002683 CTCAGTAAGATGTCCAGTGTAGGAGAAGGCA-GAAATGCCAGG
s panTro4.chr19              59038080 42 +  63644993 CTCAGTAAGATGTCCAGTGTAGGAGAAGGCA-GAAATGCCAGG
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100350 42 +  51301725 CTCAGTAGGATGTCCAATGTAGTAGAAGGCG-GAAATgtcagg
i papAnu2.chr19             C 0 T 56
s canFam3.chr1               19604331 23 - 122678785 --------------------gggagagggagtgaggcatcggg
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3640425 50 + 145441459 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=14949.000000
s hg38.chr19_GL949751v2_alt    104609 54 +   1002683 ------CTGGGCGCAGACAGCTCAGTAAGATGTCCAG-------TGTAGGAGAAGGCAGAAA---TGCCA
s panTro4.chr19              59038122 54 +  63644993 ------CCGGGCACAGACAGCTCAGTAAGATGTCCAG-------TGTAGGAGAAGGCAGAAA---TGCCA
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100336 54 +  51301725 ------CCGGGCACAGACAGCTCAGTAGGATGTCCAA-------TGTAGTAGAAGGCGGAAA---Tgtca
i papAnu2.chr19             T 56 T 56
s canFam3.chr1               19604354 70 - 122678785 ttggacccgcccagggaggcctcagcaagaaggtcagaattacctgtggaagatactgggaatggtgcca
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3640425 50 + 145441459 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=9107.000000
s hg38.chr19_GL949751v2_alt    104663 30 +   1002683 GGCCGGGCGCAGACAGCTCAGTAAGATGTC
s panTro4.chr19              59038176 30 +  63644993 GGCCGGGCGCAGACAGCTCAGTAAGATGCC
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100334 30 +  51301725 GGCCGGGCACAGACAGCTCAGTAGGATGTC
i papAnu2.chr19             T 56 C 0
s canFam3.chr1               19604424 30 - 122678785 gCCAGTGTGGAGCCCCCACAGCTGGACGCC
i canFam3.chr1              C 0 I 288
e mm10.chr7                   3640425 50 + 145441459 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=6244.000000
s hg38.chr19_GL949751v2_alt    104693 26 +   1002683 CAGTGTAGGAGAAGGCAGAAATGCCA
s panTro4.chr19              59038206 26 +  63644993 CAGTGTAGTAGAAGGCAGAAATGCCA
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100364 26 +  51301725 CAATGTAGTAGAAGGCGGAAATgtca
i papAnu2.chr19             C 0 T 56
e mm10.chr7                   3640425 50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=14450.000000
s hg38.chr19_GL949751v2_alt    104719 56 +   1002683 GGCCGGGCGCAGACAGCTCAGTAAGATGTCCAGTGTAGGAGAAGGCAGAAATGCCA
s panTro4.chr19              59038232 56 +  63644993 GGCCGGGCGCAGACAGCTCAGTAAGATGTCCAGTGTAGGAGAAGGCAGAAATGCCA
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100334 56 +  51301725 GGCCGGGCACAGACAGCTCAGTAGGATGTCCAATGTAGTAGAAGGCGGAAATgtca
i papAnu2.chr19             T 56 T 56
e mm10.chr7                   3640425 50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=15050.000000
s hg38.chr19_GL949751v2_alt    104775 58 +   1002683 GGCCGGGCGCAGACAGCTCAGTAAGATGTCCAGTGTAGGAGAAGGCAGAAATGCCAGG
s panTro4.chr19              59038288 58 +  63644993 GGCCGGGCGCAGACAGCTCAGTAAGATGTCCAGTGTAGGAGAAGGCAGAAATGCCAGG
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100334 58 +  51301725 GGCCGGGCACAGACAGCTCAGTAGGATGTCCAATGTAGTAGAAGGCGGAAATgtcagg
i papAnu2.chr19             T 56 T 56
e mm10.chr7                   3640425 50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=13935.000000
s hg38.chr19_GL949751v2_alt    104833 56 +   1002683 CTGGGCGCAGACAGCTCAGTAAGATGCCCAGTGTAGTAGAAGGCAGAAATGCCAgg
s panTro4.chr19              59038346 56 +  63644993 CCGGGCGCAGACAGCTCAGTAAGATGTCCAGTGTAGGAGAAGGCAGAAATGCCAgg
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47100336 56 +  51301725 CCGGGCACAGACAGCTCAGTAGGATGTCCAATGTAGTAGAAGGCGGAAATgtcagg
i papAnu2.chr19             T 56 T 19
e mm10.chr7                   3640425 50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e ponAbe2.chr19              55916166  0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791  0 - 106955855 C
e chlSab2.chr6               46807850  0 +  50890351 C
e macFas5.chr19              54984456  0 +  59248254 C
e rheMac3.chr19              59966558  0 +  64156825 C

a score=26492.000000
s hg38.chr19_GL949751v2_alt    104889 292 +   1002683 ccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaacttagccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcacttcagcctgggcgacagagccagactctgtctcaaaaaaaaaaaaa
s panTro4.chr19              59038402 292 +  63644993 ccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaacttagccgggcgtggtggcgggtgcctgtagtcccagctacttgggaggctgtggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccaagatcgtgccactgcactccagcctgggcgacagggccagactccatctcaaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3640425  50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e ponAbe2.chr19              55916166   0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I
e nomLeu3.chr10             102680791   0 - 106955855 C
e chlSab2.chr6               46807850   0 +  50890351 C
e papAnu2.chr19              47100392  19 +  51301725 T
e macFas5.chr19              54984456   0 +  59248254 C
e rheMac3.chr19              59966558   0 +  64156825 C

a score=17014.000000
s hg38.chr19_GL949751v2_alt    105181 9 +   1002683 agaaggcag
s panTro4.chr19              59038694 9 +  63644993 agaaggcag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102680791 9 - 106955855 agaaggcgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59966558 9 +  64156825 agaaggcgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54984456 9 +  59248254 agaaggcgg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47100373 9 +  51301725 AGAAGGCGG
i papAnu2.chr19             T 19 C 0
s chlSab2.chr6               46807850 9 +  50890351 agaaggcgg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3640425 50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e ponAbe2.chr19              55916166 0 +  60714840 C
e calJac3.chr22              45381642 489 +  49145316 I

a score=516860.000000
s hg38.chr19_GL949751v2_alt    105190 211 +   1002683 aaaTGCCagggaggggaggaggtggaaggtaggaggtgggaCAGGGGAGGCTCTCGTTTCGGAGCAGCCAGGGAGGGCCTCTTTGAGAAGATGAGGCCAGTGGCTGTGCCTTTCCAAGCCTCCCCTCCTCCATCATGAGGTGCTCaggactgaaaagaacgcacaggaagcacttggcactgggctcaccattagagcccaatgactgggt
s panTro4.chr19              59038703 211 +  63644993 aaaTGCCAGGGAGGGGAGGAGGTGGAAGGTAGGAGGTGGGACAGGGGAGGCTCTTGTTTTGGAGCAGCCAGGGAGGGCCTCTTTGAAAAGATGAGGCCAGTGGCTGTGCCTTTCCAAGCCTCCCCTCCTCCATCATGAGGTGCTCAGGACTGAAAAGAACGCACAGGAAGCACTTGGCACTGGGCTCACCATTAGAGCCCAATGACTGGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55916166 211 +  60714840 aaatgccagggaggggaggaggtggaaggtagggggtgggacaggggagactctcgttttggagcagccagggagggcctctttgagaagatgaGGCCAGTGGCTATGCCTTTCCAAGCCTCCCCTCCTCCATCATGAGGTGCTCAGGACTGAAAAGAATGCACAGGAAGCACTTGGCACTGGGCTTACCATTAGAGCCCGATGACTGGGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102680800 210 - 106955855 aaatgccagggagggga-gaggtggaaggtaggaggtgggacaggggaggctctcgttttggagcagccagggagggcctctttgagaagatgaGGCCGGTGGCTGTGCCTTTCCAAGCCTCCCCTCCTCCACCATGAGGTGCTCAGGACTGAAAAGAATGCGCAGGAAGCACTTCGCACTGGGCTCACCATCAGAGCCCGATGACTGGGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59966567 209 +  64156825 aaatgccagggaggggaggaggtgggaggtaggaggtgggac--gggggactctcgttttggagcagccagggagggcctctttgagaagatgaGGCCAGTGGCCGTGCCTTTCCAAGCCCCCCCTCCTCCGCCATGAGGTGCTCGGGACTGAAAAGAATGCACAGGAAGCACTTGGCACTAGGCTCACCACTGGAGCCCGATGACTGGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54984465 209 +  59248254 aaatgccagggaggggaggaggtgggaggtaggaggtgggac--gggggactctcattttggagcagccagggagggcctctttgagaagatgaGGCCAGTGGCCGTGCCTTTCCAAGCCTCCCCTCCTCCGCCATGAGGTGCTCAGGACTGAAAAGAATGCACAGGAAGCACTTGGCACTGGGCTCACCACTGGAGCCCAATGACTGGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47100382 209 +  51301725 AAATgtcagggaggggaggaggtgggaggtaggaggtgggac--ggggagCTCTCGTTTTGGAGCAGCCAGGGAGGGCCTCTTTGAGAAGATGAGGCCAGTGGCTGTGCCTTTCCAAGCCTCCCCTCCTCTGCCATGAGGTGCTCAGGACTGAAAAGAATGCACAGGAAGCACTTGGCACTGGGCTCACCACTGGAGCCCGATGACTGGgt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46807859 209 +  50890351 aaatgccagggaggggaggaggtgggaggcaggaggtgggac--ggggggctctcgttctggagcagccagggagggcctctttgagaagatgaGGCCAGTGGCTGTGCCCTTCCAAGCCTCCCCTCCTCCGCCATGAGGTGCTCAGGACTGAAAAGAATGCACAGGAAGCACTTGGCACTGGGCTCACCACTGGAGCCCGATGACTGGGT
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3640425  50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I
e calJac3.chr22              45381642 489 +  49145316 I

a score=241281.000000
s hg38.chr19_GL949751v2_alt    105401 85 +   1002683 cctgttatt--------ATTTTTAGAGACGGGGGCTCGCTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCTCCCATTGC
s panTro4.chr19              59038914 85 +  63644993 CCTGTTACT--------ATTTTTAGAGACGGGGGCTCGCTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCTCCCATTGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55916377 85 +  60714840 CCTGTTATT--------ATTTTTAGAGACAGGGGCTCGCTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCGGCCAGGTGTTGGCTCCCATTGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102681010 83 - 106955855 CCTGTTAGT--------ATTTTTAGAGAC--GGGCTCACTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCTCCCATCGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59966776 87 +  64156825 CCTGTTATT------TTTTTTTTAGAGACAGGGGCTCGCTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCGCCCATCGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54984674 87 +  59248254 CCTGTTATT------TTTTTTTTAGAGACAGGGGCTCGCTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCGCCCATCGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47100591 93 +  51301725 cctgttatttatttattttttttagagacaggggcttgctctgtt------gccttgAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCTCCCATCGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46808068 89 +  50890351 CCTGTTATT----TTTTTTTTTTAGAGACAGGGGCTTGCTCTGTT------GCCTTGAAAATATTTAGGAAGTGCCAGCCAGGTGTTGGCTCCCATCGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45382131 94 +  49145316 ccTGttatt-----attttctttagagacagagtctcgctctgttgcccaggcCTTGAAAATATTTAGGAAGTTCCAGCCAGGTGCCGGCGTCTATCGC
i calJac3.chr22             I 489 C 0
e mm10.chr7                   3640425 50 + 145441459 I
e canFam3.chr1               19604454 288 - 122678785 I

a score=302873.000000
s hg38.chr19_GL949751v2_alt    105486 92 +   1002683 TG-CCACTATGATCGTCAGTGGTGTTGGTGTGATTTGtgctaggacctcgggccagccatgtcccccagggactcagtttccttatgcagaaa
s panTro4.chr19              59038999 92 +  63644993 TG-CCACTATGATCGTCAGTGGTGTTGGTGTGATTTGTGCTAGgacctcgggccagccatgtcccccagggactcagtttccttatgcagaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55916462 91 +  60714840 TG--CACTATGATCGTCAGTGGTGTTGGTGTGATTTGTGCTAGgacctcgggccagccatgtcccccagggactcagtttcctcatgcagaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102681093 93 - 106955855 TGGCCACTGTGATCGTCAGTGGTGTTGGTGTGATCTGCGCTGGGACCTCCGGCCAGCCATGTCCCCCAGGGACTCAGTTTCTGCATGCAGAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59966863 93 +  64156825 TGGCCACTGTGATCGTCGGTGGTGTTGGTGTGATTTGTGCtgggacctcgggccagccacgtcccccagggactcagtttcctcatgcagaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54984761 93 +  59248254 TGGCCACTGTGATCGTCGGTGGTGTTGGTGTGATTTGtgctgggacctcgggccagccacatcccccagggactcagtttcctcatgcagaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47100684 93 +  51301725 TGGCCACTGTGATCGTCGGTGGTGTTGGTGTGATTTGTGCTGGGACCTCGGGCCAGCCACGTCCCCcagggactcagtttcctcatgcaGAAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46808157 93 +  50890351 TGGCCACTGTGATTGTCGGTGGTGGTGGTGTGATTTGTGCtgggacctcgggccagccacgtcccccagggactcagtttcctcatgcagaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45382225 93 +  49145316 TGGACACTGTGATCATCAGTAGTGTTGGTGTGATTTGTGCtgggacctccagccagccacatcccccagagactcagtttcctcatccagaaa
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3640475 87 + 145441459 tg-ccagcattgtcatcactgtcatgggtgggattt--gcaggaaaCT--GGCTGGCCATATCCCTCTGGGATTCAGTTTCCTTATCCAG-AA
i mm10.chr7                 I 50 C 0
e canFam3.chr1               19604454 288 - 122678785 I

a score=3417376.000000
s hg38.chr19_GL949751v2_alt    105578 1025 +   1002683 ctgggcaggattggctgtcctcaagcattggttgtttttagca-cccctgaggaacttcgtacaaatccaggcgccctggttcctccccaccct---ctccctctagacccactgagtcagaatctcCCAAGAC--------AGGGCAACTCCAGGGACAGGCAAACTGTCTCATGCCCA-CCAAGGCCTGAGTGCCATGGGGAAGGGCCTGGGGGGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCTAACCCATCATCC-----------TCTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTTATGTCCACCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGTCC-AGTCCTTCTGAAG-GGCT-AGGATCG--------GGTTCTGGCAGGGAGAA----------CCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAGGGAGGAGGCCTTGGAAG-AGTCCGGCCTGGCCTCCCCCAGGACCGAGATCACCG---CCCAGTAT---GGGCTAGAGCAGGTCTTCATCATGCCTTGTCTT-----TTTTAACTGAGAAAGGAGA---TTTTTTGAAAAGAGTACAATTAAAAGG-ACATTGTCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCCGGGGCAACTAGAAGAATCAGAGCTGTGGAGCTTT--GAGAAAAGAGCTTGGCCCTCGGGTCCAAGCGGTGTCTAGGCCCACTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAAGCCC------TCTCC--------AACCCCCTGGAGAGCCGCAGTCACTTTGATAGCA--AA-------------TGATGTGGCTGCCA-ACAGCCGCAGATCTCAGCGCAGGCCGACCGGGATTGCTGT-CCACCTCAGGCCAGCCTCCTCACCTTTCCAAGCCTCCACACCTA------CGCCCAGGTG----CCCAGGAC--TGgaaagaatgcacagaaagcactta
s panTro4.chr19              59039091 1028 +  63644993 cggggcaggattggctgtcctcaagcattgg-tgtttttagcaccccctgaggaacttcatacaaatctaggcgccctggttcctccccaccct---ctccctccagacccactgagtcagaatctcccaagac--------agggcAACTCCAGGGACAGGCAAACTGTCTCATGCCCA-CCAAGGCCTGAGTGCCATGGGGAAGGGCCTGGGGGGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCTAACCCATCATCC-----------TCTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTTATGTCTACCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGTCC-AGTCCTTCTGAAG-GGCT-GGGATCG--------GGTTCTGGCAGGGAGAA----------CCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAGGGAGGAGGCCTTGGAAG-AGTCCGGCCTGGCCTCCCCCAGGACCGAGATCACCG---CCCAGTAT---GGGCTAGAGCAGGTCTTCATCATGCCTTGTCTT-----TTTTAACTGAGAAAGGAGATACTTTTTTGAAAAGAGTACAATTAAAAGG-ACATTGTCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCCGGGGCAACTAGAAGAATCAGAGCTGTGGAGCTTT--GAGAAAAGAGCTTGGCCCTCGGGTCCAAGCGGTGTCTAGGCCCACTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAAGCCC------TCTCC--------AACCCCCTGGAGAACCGCAGTCACTTTGATAGCA--AA-------------TGATGTGGCTGCCA-ACAGCCACAGATCTCAGCGCAGGCCGACCGGGATTGCTGT-CCACCTCAGGCCAGCCTCCTCACCTTTCCAAGCCTCCCTACCTA------CGCCCAGGTG----CCCAGGAC--TGgaaagaatgcgcagaaagcactta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55916553 1035 +  60714840 cggcgcaggattggctgtcctcaagcattggtggtttttagcaccccctgaggaacttcatacaaatctaggcgccctggttcctccccaccct---ctccctccagacccactgagtcagaatctcccaagac--------agggcAACTCCAGGGACAGGCAAACTGTCTCATGCCCACCCAAGGCCTGAGTGCCATGGGGAAGGGCCTGGGGCGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCTAACCCATCATCC-----------TCTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAGGCAGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCCACCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGTCT-AGTCCTTCTGAAG-GGCT-GGGATTG--------GGTTCTGGCAGGGAGAA----------CCTACCCTGCCACCGGCCCCAGTGCTGAGACTGCCTAGGGAGGAGGCCTTGGAAG-AGCCCGGCCTGGCCTCCCCCAGGACCGAGATCACCG---CCCGGTAT---GGGCTAGAGCAGGTCTTCATCATGCCTTGTCTTTTTTATTTTAACTGAGAAAGGAGAAACTTTTTTGAAAAGAGTACAATTAAAAGG-ACATTATCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAAGAGTCAGAGCTGTGGAGTTTT--GAGAAAAGAGCTTGGCCCTCGGGTCCAAGTGGTGTCTAGGCCCACTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAAGCCC------TCTCC--------AACCCCCTGGAGAACCTCAGTCACTTTGATAGCA--AA-------------TGATGTGGCTGCCG-ACAGCCACAGATCTCAGCGCAGGCCGACCGGGATTGCTGT-CCACCTCAGGCCAGCCTCCTCACCTTTCCAAGCCTCCACACCTA------CGCCCAGGTG----CCCAGGAC--TGgaaagaatgtgcagaaagcactta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102681186 1027 - 106955855 CTGGGCAGGATTGGCTgtcctcaagcattggttgtttttagcaccccctgaagaacttcatacaaatctaggcaccctggttcctccctacc-----ttccctccagacccatggagtcagaatctcCCAAGAC--------AGGGCAACTCCAGGGACAGGCAAACTGTCTCATGCCCACCCACGGCCTGAGTACCATGGGGAAGGGCCTGGGGGGCTTTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCTAACCCATCATC-------------CTCTCCCTCACCTGCCCAGGGCTTGGAGATTGTGAACCCACAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCCACCTGAATGACTGCATGCGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGTCT-AGTCCTTCTGAAG-GGCT-GGGATCG--------GGTTCTGGCAGTGAGAA----------CCTGCCCTGCCACCGGCCCCAGTGCTGGGACTGCCCAGGGAGGAGGCCTTGGAAG-AGATGGGCCCAGCCTCCCCCAGGACCGAGATCACTG---CCCAGTAT---GGGCTAGAGCAGGTCTTCATCATGCCTTGTCTTTTTTATTTTAACTGAGAAAGGAGATACTTTTTTG--AAGAGTACAATTAAAAGG-ACATTATCAAGGTCTGTCCTTGGAGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAAGAGTCAGAGCTATGGAGTTTT--GAGAAAAGAGCTTGGCCCTCGGGTCCAAGCGGTGTCTAGGCCCACTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAGACCC------TCTCC--------AACCCCCTGGAGAACCTCAGTCACTTTGATAGCA--AA-------------TTATGTGGCTGCCG-ACGGCCGCAGA--TCAGCGCAGGCCGACCGGGATTGCTGT-CCACCTCAGGCCAGCCTCCTCACCTTTCCAAGCCTCCACACCTA------CGCCCACGTG----CCCAGGAC--TGCAAAGAACGCACAGAAAGCACTTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59966956 1040 +  64156825 ctgggcaggattggctgttctcaagcgtcggttgtttttagca-cccctgaggaacttcatacaaatctaggcgccctggttcctccccagcct---cttccccgagacccactgagtcagaacctcCCAAGAC--------AGGGCAACTCCAGGGACAGGCAAACTGTCTCATGCCCACCCAAGGCCTGAGTACCATGGGGAAGGGCCTGGGGGGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCCAACCCACCATCC-----------TGTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCCACCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGCCC-AGTCCTTCTGAAG-GGCT-GGGATTGGGGCTGGCGGTTCTGGCAGGGAGAA----------CCTGCCCTGCCACCGGCCCCAGTGCTGGG-CTCCCCAGGGAGGAGGCCTTGGAAG-AGCCCGGCCTGGCCTCCCCCAGGACCGAGGTCACTG---CCTGGTGT---GGGCTAGAGCCGGTCTTCATCATGCCTTGTCTGTTTTATTTTAACTGAGAAAGGAGATGCTTTTTTGAAAAGAGTACAATTAAAAGG-ACATTATCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAAGAGTCAGAGCTATGGAGTTTT--GAGAAAAGAGCTT-TCCCTCGGCTCCAGGAGGTGTCTAGGCGCGCTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAA-CCC------TCTCC--------AGTGTCCTGGACAACCTCAGTCACTTCGATAGCA--AA-------------CGATGTGGCTGCCG-ACAGCCGCAGAGCTCAGCGCAGGCCAGCCGGGATTGCTCTGGCACCTCAGGCCAGCCACCTCGCCTTTCCAAGCCTCCGCACCTA------CGCCCAGGGG----CCCAGGAC--TGGAAAAAATGCACAGAAAGCACTTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54984854 1040 +  59248254 ctgggcaggattggctgttctcaagcgtcggttgtttttagca-cccctgaggaacttcatacaaatctaggtgccctggttcctccccagcct---cttccccgagacccactgagtcagaacctcccaagac--------agggcAACTCCAGGGACAGGCAAACTGTCTCATGCCCACCCAAGGCCTGAGTACCATGGGGAAGGGCCTGGGGGGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCCAACCCACCATCC-----------TGTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCCGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCCACCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGCCC-AGTCCTTCTGAAG-GGCT-GGGATTGGGGCTGGCGGTTCTGGCAGGGAGAA----------CCTGCCCTGCCACCGGCCCCAGTGCTGGG-CTCCCCAGGGAGGAGGCCTTGGAAG-AGCCCGGCCTGGCCTCCCCCAGGACCGAGGTCACTG---CCTGGTGT---GGGCTAGAGCCGGTCTTCATCATGCCTTGTCTGTTTTATTTTAACTGAGAAAGGAGATGCTTTTTTGAAAAGAGTACAATTAAAAGG-ACATTATCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAAGAGTCAGAGCTATGGAGTTTT--GAGAAAAGAGCTT-TCCCTCGGCTCCAGGCGGTGTCTAGGCGCGCTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAA-CCC------TCTCC--------AGTGTCGTGGACAACCTCAGTCACTTCGATAGCA--AA-------------CGATGTGGCTGCCG-ACAGCCGCAGAGCTCAGCGCAGGCCAGCCGGGATTGCTCTGGCACCTCAGGCCAGCCACCTCGCCTTTCCAAGCCTCCACACCTA------CGCCCAGGGG----CCCAGGAC--TGGAAAAAATGCACAGAAAGCACTTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47100777 1037 +  51301725 CTGGGCAGGATTGGCTGTTCTCAAGCGTCGGTTGTTTTTAGCA-CCCCCGAGGAACTTCGTACAAATCTAGGCGCCCTGGTTCCTCCCCAGCCT---CTCCCCCGAGACCCACTGAGTCAGAACCTCCCAAGAC--------AGGGCAACTCCAGGGACAGGCAAACTGTCTCATGCCCACCCAAGGCCTGAGTACCACGGGGAAGGGCCTGGGGGGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCCAACCCACCATCC-----------TGTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCGCAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCTAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCCACCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAGGGACACAGAGGCCC-AGTCCTTCTGAAG-GGCT-GGGATGGGGGCTGGGGGTTCTGACAGGGAGAG----------CCTGCCCTGCCACCGGCCCCAGTGCTGGG-CTCCCCAGGGAGGAGGCCTTGGAAG-AGCCCGGCCTGGCCTCCCCCAGGACCGAGGTCACTG---CCTGGTGT---GGGCTAGAGCCGGTCTTCATCATgccttgtctgttttattttaactgaGAAAGGAGATGCTTTTTTGAAAAGAGTACAATTAAAAGG-ACATTATCAAGATGTGTTCTTGGGGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAAGAGTCAGAGCTATGGAGTTTT--GAGAAAAGAGCTT-TCCCTCGGGTCCAAGTGGTGTCTAGGCGTGCTCCCTTCCCCGTTACTTTCTCGTCATGGGATCCCAGAAGGAAAAA-CCC------TCTCC--------AGTGCCCTGGACAACCT--GTCACTTCGATAG-A--AA-------------TGATGTGGCTGCCG-ACAGCCGCAGAGCTCAGCGCAGGCCAAGCGGGATTGCTCTGGCACCTCAGGCCAGCCACCTCGCCTTTCCAAGCCTCCACACCTA------CGCCTAGGAG----CCCAGGAC--TGGAAAAAATGCACAGAAAGCACTTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46808250 1041 +  50890351 ctgggcaggattggctgttctcaagcgtcGGTTGTTTTTAGCA-CCCCTGAGCAACTTCGTACAAATCTAGGTGCCCTGGTTCCTCCCCAGCCT---CTCCCCCGAGACCCACTGAGTCAGAACCTCCCAAGAC--------AGGGCAACTCCAGGGACAGGCAAACTGTCTCACGCCCACCCAAGGCCTGAGTACCATGGGGAAGGGCCTGGGGGGCTCTGATGGGTCACAGTT---------------GGGGCCT---TCTCCTCACCCAGCCCACCATCC-----------TGTCTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAGGCGGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAGTATTTCTCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCCACCTGAATGACTGCGTGTGTCCGAGGTGGCTTCCCACTGAAGGGACACAGAGGCCCAAGTCCTTCTGAAG-GACT-GGGATCGGGGCTGGGGGTTCTGGCAGGGAGAA----------CCTGTCCTACCACTGGCCCCAGTGCTGGG-CTCCCCAGGGAGGAGGCCTTGGAAG-AGCCCAGCCTGGCCTCCCCCAGGACCGAGGTCACTG---CCTGGTGT---GGGCTAGAGCCGGTCTTCATCATGCCTTGTCTGTTTTATTTTAACTGAGAAAGGAGATGCTTTTTTGAAAAGAGTACAATTAAAAGG-ACATTATCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAAGAGTCAGAGCTATGGAGTTTT--GAGAAAAGAGCTT-TCCCTCGGGTCCAAGCGGTGTCTAGGCGCACTCCCTTCCCCGTTACTTTCTCGTCGTGGGATCCCAGAAGGAAAAA-GCC------TCTCC--------AGTGCCCTGGACAACCTCAGTCACTTTGATAGCA--AA-------------TGATGTGGCTGCCG-ACAGCCGCAGAGCTCAGTGCAGGCCAGCCGGGATTGCTGCGGCACCTCAGGCCAGCCACCTCGCCTTTGCAAGTCTCCACACCTA------CGCCTAGGTG----CCCAGGAC--TGGAAAAAATGCACAGAAAGCACTTA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45382318  991 +  49145316 ctgagcaggattggCTGTCCTCAGGCACTGG-TGTTTttagcagcccctggggaacttgttaaaaacctaggtgccctggtttctccccaccct---ctccccccagacccactgaggcagaatcttccaaggc--------agggcGACTCCAGGGACTGGCAAACTGTCCCATGCCCACCCAAGGCCTGAGTACCACGGGGAAAGGCCTGGGGGGCTCTGGCGTGT--CAGTT---------------GGGGCCT---TCTCCTTGCCCAACACATCATCC-----------TCTCTCCCTCACCTGCCTAGGGCCTGGAGATTGTGAACCCACAGGCCGCGGAGAAGAAGGTGGCTGAGGCCAATCAGAAGTATTTCTCCAGCATGGCAGAGTTCCTCAAGGTCAAGGGCGAGAAGAGTGGCCTCATGTCTACCTGAATGATAGCGTGTGCCCAACGTGGCTTCCCACTGAAGGGACGTTGAAGTCC-AGGCCTTCTGAAG-GGCT-GGGATGGGGGTTAGGGGTTGTGGCAGGGAGAG----------CCTTCCCTGCCGCCCA-CCCGGTGCTCGA-CTGCCCAGGGAGG-GGCCTCGGAAGAAGCCTGGCCCGGCCTCCTCCAGGACGGAGCTCACCG---CCCTGGAT---GGGTTAGAGCAGGTCT---TCATGCCTTGTCTTTTTTATTTTAACTGAGAAAGGAGATACTTTTTTGAAGAGAGTGCAATTAAAAAGCACATTATCAAGATCTGTCCTTGGGGAGTGATCATTTTTCAAACAGCTGGGGCAACTAGAATAGTCAGAGCTTCGGAGTTTG--GGGAAAAGAGCTTCGCCTCCGG----------------GGCTCACTCCCTCCCCTGTTCCTTTCTCA------------------------------------CC--------AACCCCCTGGAGAACCTCAGTCGCTTTGATAGCA--GA-------------CGGTGTGGCAGCCG-ACACCTGAAGATCTCAGCGCAGGCTGACCAAGGTTGCGCTGGCACCTCAGGCCGGTTGCCTCGCCTTTCCGAGCCTCCACAGCTA------CGCCCAGGCG----CCCAGGGC--TGgaaagaacgcgcagaaagcactta
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3640562  964 + 145441459 CCAGGCAGGAGTGG------------------TGATTTTAACATCACCTGAGGAGATTAACA-----------GTCCTGACATCT----AAGAC---CTACCCCAACACCCACTGTGTCAAAAATCTCCCAAAC------TGAGGGAGACTTCAGGGACT-GTAAATGGTTCCATGTCCA--CAAG------------------AGTGTCTGGGAGACTCTGACATGTC-TGGTTCTCAT-CTAG--AGGGAGGCCTGAGCTTCCCAACTTCACCTGTCACC-------------CTCTTCCTTTCCAACCCAGGGTCTAGAGATTGTGAACCCACAAGCAGCCGAGAAGAAGGTGGCAGAGGCCAACCAGAAGTATTTCTCTAGCATGGCCGAGTTCCTCAAGGTCAAGGGTGAGAAAAGTGGCACCATGTCTACCTGAAGGA--GCCCGCACTCCAGGTGACCATCCACTGAAAGGACATAAAGGACT-GGAGCTTCTGAAGTGACA-GATATCCAGCCAGGAAGTTGTGGTGTGGTGGAGGCAGCCTTCCATGCTTTGCCTTTGGCCCAAGGCCATAG-CATCCAAGAAAAAGGAT----GAAG-AACCTTAGCCTGCCTCCCCCAGCATCCATGCTGCTGCTTCCCTAAAC---GGGCAGAA--AGGTCTTCCTCACA-CTCAGCTTTTTTACTTACAGGGGGAAAGGCAGTGCTTTTATAGAACGAGTACAATTAAATGT-GTAGTGTCGGGCTCTGAACAGAGGGTGTGAGTGATTATGAAA---------GAACCAAAGGACTCAGAGCTGTGGGGCTTCCAGTGTGAGCAGCAT-------GGACCCA----------------GCTCTCTTCTGC-------TCTTATCCTGGAATCT----AAGAAAAA-CCCTGTCTATCTCT--------AACACCATCACCTGCCCCA-------TGAGAACATCAG-------------CATCATGGCCACCACAAAACTCCAGGACCCAACAAGACCCA--CAGGGTTGTTGT---CCCTCAGGCTAGACACCTTGGTCCAAGAAACATCCACACAAAATGAAGCACGTAAAAG----CC-----T--TGGAAAGTGTGTACAGAAAGCACCCA
i mm10.chr7                 C 0 I 2427
s canFam3.chr1               19604742 1028 - 122678785 ctgagccacctgggctgccc---AACATTGA-TGCTTttaaaattgcttagagaacttgataaaaattcagatgcccaggt-cctccccaCTCTTCCCTCTTCCCAGAGCCAC--AGTTAGAATCTCCCCAGGTTTGGGGTGGGGGCAA-TTTGGTAATTGGAAAACTGTTCTAT---CACCTGGAGCCCG-GAACCATTGAAAAGGGCCT------CCCCGACATGTCACAATTCTCTTACTGGGTAAGGGGGCCT---TGTCAGGGGCCAGCCCATCTCCCCACCCCATCATTACCTCATTCACCTGCCCAGGGCCTAGAGATTGTGAACCCACAAGCAGCTGAGAAGAAGGTGGCTGAAGCCAACCAGAAGTATTTCTCCAGCATGGCCGAGTTCCTCAAGGTCAAGGGCGAGAAAAGCGGCATCATGTCCACCTGAGGGGC----TGTACCCTGGGTGGCTGCCC-CTGAAGCTACAC--AGGCCC-TGCCCTTCTGAAG-GGATCAGGATCA--------GGATAGGGCTGGGAGGT----------TCTGTCCT-----CAG-CCCAGTGCCAGGACTGTCCAGGAA---GACTCAGGAGG-AGACC-------CAGTCCCCACGCACGAGATCGCTC---CCTATTGCAGGGGGGCAGAGCCAGTCTTCATCATGCCTCACCTT-----TTTTAACTAGGAAGGAAGATACTTT--TGGAAAAAGTACGATTAAAAAGCACATTATCAAGTTCCGTTCCTGGGGAGTGATCATTTGTCAAACACATGCG-TGACTGGAGGAGTCAGAGCTGTGCGGGTTTGGGGGCACAGAGCTT-------------------------GGGCCCTTCCCTGGCCTTTCACTTCCCTGTGATGGACCCCAGGAAGAGAAAAGCCT------TCTCTATGTCCAAACCTCCTTGGAGAACGTAAGT---TCTGACACTC--AAGTTCTGACACTTCTGATGTGGCTACTG-AAAGCCCTGGCTTTGAAAACTTGCCAACCTGGGTGGCTGT--GATGTCAGGGGAGTGGCCATGCCTTTCCAGGCCTCCACCCTGA------ACACTACGGGGTCACCCATGACCATGTGAGACATGCTCGGGAGGTGCTTA
i canFam3.chr1              I 288 C 0

a score=58637.000000
s hg38.chr19_GL949751v2_alt    106603 28 +   1002683 gcatgggacttgccatcagcgccctata
s panTro4.chr19              59040119 28 +  63644993 gcatgggacttgccatcagcgccctata
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917588 28 +  60714840 gcatgggacttgccatcagcgctttata
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102682213 28 - 106955855 GCATGGGACTcgccatcagcgcccaata
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59967996 22 +  64156825 GCATG------GCCATCAGCGCCCAATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54985894 22 +  59248254 GCATG------GCCATCAGCGCCCAATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47101814 22 +  51301725 GCATG------GCCATCAGCGCCCAATA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46809291 22 +  50890351 GCATG------GCCATCAGCGCCCAATA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45383309 27 +  49145316 gcacagggctcg-cgtcagcacccaata
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19605770 28 - 122678785 GTGTTGGGCTCCCCGACAGGGTCCAGTA
i canFam3.chr1              C 0 I 94
e mm10.chr7                   3641526 2427 + 145441459 I

a score=444647.000000
s hg38.chr19_GL949751v2_alt    106631 184 +   1002683 accaggtcctgttatGATTGGG--ttttttagagacggggtctctgttgcccaggttggagtacagtgatgcgatga-agctcactaaagcctcaaactcctgg------gctgggattacaggcatgaaccagcacagctggcctcctggttaatttaaa----------tttttt-ttttttttctgaggtggagtctcgct
s panTro4.chr19              59040147 185 +  63644993 accaggtcctgttatGATTGGG--ttttttagagacggggtctctgttgcccaggttggagtacagtgatgcgatga-agctcactacagcctcaaactcctgg------gctgggattacaggcgtgaaccagcacagctggcctcctggttaatttaca---t------tttttt-ttttttttctgaggtggagtctcgct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917616 190 +  60714840 accaggtcctgttattACTGGGttttttttagagacagggtctctgttgcccaggttggagtacagtgatgcgatca-agctcactacagcctcaaactcctgg------gctgggattacaggcatgaaccactgcaactggcctcctggttaatttaaatttt------tttttt-ttttttttctgaggtggagtctcact
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102682241 186 - 106955855 accaggtcttgttagtgttgggttttttttagagacggggtctctgttgcccaggttggagtacagtgatgcgatcatagctcgctacagcctcaaactcctgg------gctaggattacaggcatgaaccggcacacctggcctcctggttaatttaa-----------tttttt-tttttttcctgaggtggagtctggct
i nomLeu3.chr10             C 0 I 3
s rheMac3.chr19              59968018 193 +  64156825 ACCAGGTCCTGTTGTTACTGGt-tttttccagagacggggtctctgttgcccaggttggagtacggtgatgcagtcatagctcactacagcctcaaa---ctgg------gctGGGATTACAGGCACGAAGCTCCACAGCTGGCCTCCTGGTTAATGTAACAttttttgtgtgtttg-gtttttttctgaggtggagtctcgct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54985916 193 +  59248254 ACCAGGTCCTGTTGTTACTGGt-tttttccagagacggggtctctgttgcccaggttggagtacggtgatgcagtcatagctcactacagcctcaaa---ctgg------gctgggattacaggcatgaagcaccacagctggccTCCTGGTTAATTTAACAttttttgtgtgtttg-gtttttttctgaggtggagtctcgct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47101836 196 +  51301725 ACCAGGTCCTGTTGTTACTGGT-TTTTTCCAGAGAcggggtctctgttgcccaggttggagtacggtgatgcagtcatagctcactacagcctcaaactcctgg------gctgggattataggcatgaaccaccgcagcTGGCCTCCTGGTGAATTtaacattttgtgtgtgtttg-ttttttttctgaggtggagtctcgct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46809313 197 +  50890351 ACCAGGTCCTGttgttactgtt-tttttccagagacggggtctccgttgcccaggttggagtacggtgatgcaatcatagctcactacagcctcaaactcctgg------gctgggattacaggcatgaaccaccgcacctggcctcctggttaatttaacattttttgtgtgtttgtttttttttctgaggtggagtctcgct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45383336 174 +  49145316 actgggtcctgtt---actGGT-Gttttttagagatgaggcctctgtcgcccaggctggagtacagtgatgtaatcatagctcactacggcctcaaactcctggtttcaagctgggattacagacgcatgccacag--------ttcctggttaat-----------------tttg-aaactttttatagatggggtcgcact
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I

a score=2800.000000
s hg38.chr19_GL949751v2_alt    106815 1 +   1002683 c
s panTro4.chr19              59040332 1 +  63644993 c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917806 1 +  60714840 c
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59968211 1 +  64156825 c
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54986109 1 +  59248254 c
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47102032 1 +  51301725 c
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46809510 1 +  50890351 c
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45383510 1 +  49145316 c
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e nomLeu3.chr10             102682427 3 - 106955855 I

a score=306169.000000
s hg38.chr19_GL949751v2_alt    106816 169 +   1002683 tgttgcccaggctagagtacagtggtgcaatcttggctcactgcaacctctacctcccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccatgtcccgctaatttttatagtttttagtagagacagggtttcgccatg
s panTro4.chr19              59040333 169 +  63644993 tgtcgcccaggctagagtacagtggtgcaatcttggctcactgcaacctctacctcccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacatcccactaatttttatagtttttagtagagacagggtttcgccatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917807 169 +  60714840 tgtcacccagactagagtacagtggtgcaatcttggctcactgcaacctctacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacgccccactaatttttatagtttttagtagagacagggtttcgccatg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59968212 169 +  64156825 tgtcgcccaggctagagtgcagtggtacaatcttggctcactgcaacctccacctcccaggttcaagcgattctcttgcctcagtctcccaagttgctgggattacaggcatgcgccaccacacctggctaatttttatagtttttagtagaaacggggtttcaccatg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54986110 169 +  59248254 tgtcgcccaggctagagtgcagtggtacaatcttggctcactgcaacctccacctcccaggttcaagcgattctcttgcctcagtctcccaagttgctgggattacaggcatgcgccaccacacctggctaatttttatagtttttagtagaaacggggtttcaccatg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47102033 169 +  51301725 tgtcgcccaggctagagtgcagtggtacaatcttggctcactgcaacctccacctcccaggttcaagcaattctcttgcctcagtctcccaagttgctgggattacaggcatgcgccaccacacctggctaatttttatagtttttagtagagacggggtttcaccatg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46809511 169 +  50890351 tgtcgcccaggctagagtgcagtggtacaatcttggctcactgcaacctccacctcccaggttcaagcgattctcttgcctcagtctcccaagttgctgggattacaggcatgcgccaccacacctggctaatttttatagtttttagtagagacggggtttcaccatg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I
e calJac3.chr22              45383511   0 +  49145316 C
e nomLeu3.chr10             102682427   3 - 106955855 I

a score=28994.000000
s hg38.chr19_GL949751v2_alt    106985 12 +   1002683 ttggtcaggctg
s panTro4.chr19              59040502 12 +  63644993 ttggtcaggctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917976 12 +  60714840 ttggtcaggctg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59968381 12 +  64156825 ttggtcaggctg
i rheMac3.chr19             C 0 I 367
s macFas5.chr19              54986279 12 +  59248254 ttggtcaggctg
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47102202 12 +  51301725 ttggtcaggctg
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46809680 12 +  50890351 ttggtcaggctg
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45383511 12 +  49145316 ttacccaggctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e nomLeu3.chr10             102682427  3 - 106955855 I

a score=-265.000000
s hg38.chr19_GL949751v2_alt    106997 1 +   1002683 t
s panTro4.chr19              59040514 1 +  63644993 t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917988 1 +  60714840 g
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45383523 1 +  49145316 g
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e nomLeu3.chr10             102682427 3 - 106955855 I
e chlSab2.chr6               46809692 1 +  50890351 I
e papAnu2.chr19              47102214 1 +  51301725 I
e macFas5.chr19              54986291 1 +  59248254 I
e rheMac3.chr19              59968393 367 +  64156825 I

a score=26094.000000
s hg38.chr19_GL949751v2_alt    106998 13 +   1002683 tctcgaactcctg
s panTro4.chr19              59040515 13 +  63644993 tctcaaactcctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55917989 13 +  60714840 tctcgaactcctg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59968760 13 +  64156825 Tcttgaactcctc
i rheMac3.chr19             I 367 C 0
s macFas5.chr19              54986292 13 +  59248254 tcttgaactcctg
i macFas5.chr19             I 1 I 483
s papAnu2.chr19              47102215 13 +  51301725 tctcgaactcctc
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46809693 13 +  50890351 tcttgaactcctc
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45383524 13 +  49145316 gcttgaacttctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e nomLeu3.chr10             102682427  3 - 106955855 I

a score=748703.000000
s hg38.chr19_GL949751v2_alt    107011 419 +   1002683 acctca--tgatatgcccacctcagcctcccaaagtgccaggattacaggtgtgagccaccac-cccagcc-----ccatttttaaattgtttat-------agacagggtcgtgctctattacccaggctggg-------------------------cttgaactcctgtgctcaagtgagctttccacctcagcctccctaagtgttgagattacaggcttgagccgc-------tgtg-------tctggcctcttattatt-----------attattatttttttttttgagacagaatctcactc-tgttgcccaggctggagtgcagtgggatgatcctggctcatggcaacctccacctcccgggtccaggtgattctcctgcctcagtctcctgagtagctgggattacaggcgcccatgggttttgtttgtttg---tttgtttgtttgttt-gtttttcagacggagtcttgctctg
s panTro4.chr19              59040528 407 +  63644993 acctca--tgatatgcccacctcagtctcccaaagtgccaggattacaggtgtgagccaccac-cccagcc-----ccatttttaaattgtttat-------agacagggtcgtgctctgttacccaggctggg-------------------------cttgaactcctgtgctcaagtgacctttccacctcagcctccctaagtgttgagattacaggcttgagccgc-------tgtg-------tctggcctcttattatt-----------attattttttttttttttgagacagaatctcactc-tgttgcccaggctggagtgcagtgggatgatcctgactcatggcaacctccacctcccgggtccaggtgattctcctgcctcagtctcctgagtagctgggattacaggcgcccatgggt---------------tttgtttgtttgttt-gtttttcagacggagtcttgctctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55918002 397 +  60714840 acctca--tgatatgcccacctcagcctctcaaagtgccaggattacaggcgtgagccaccac-cccagcc-----ccatttttaaatcgtttat-------agacagggtcgtgctctattacccaggctggg-------------------------cttgaactcctgtgctcaagtgacctttccacctcagcctccctaagtgttaaggttacaggcttgagccac-------tgtg-------tctggccTCTTACTAtt------------ttttgtttattctttttgagacagagtctcactc-tgtt--ccaggctggagtgcagtggcataatcctggctcatggaaa---ccacctcccgggtccaggtgattctcctgccttagtctcctgagtagctgggattacaggcgcccatgggt-------------------tttgtttgttt-gtttttcagacggagtcttgctctg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59968773 412 +  64156825 acctca--tgatctgcccacctcattctcccaaagtgccgagatgacaggtgtgcgccaccac-cctggcc-----ccatttttaaattgtttat-------agacagggttgggctgtattgcccaggctggg-------------------------cttgaactcctgcgcccaagtgacccttccacctcagcctccctaagtgttgacattacaggcttgagcctc-------tgtg-------tctggcctcttattatt----------ttttatttatttattttttgagacagagtcttactc-tgttgcccaggctggagtgcagtggtgtgatctcagctgacagcaacctctacct-ccgggtccagttgattgtcctgcctcagtctcctgaatagctgggattacaagcgcccaccacc-------aaacc---tttgggtttttcttc-ttttttgagacggagtcttgctccg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54986788 413 +  59248254 acctca--tgatcttcccacctcagcctcccaaagtgctgagatgataggtgtgagccaccac-cctggcc-----ccatttttaaattgtttat-------agacagggttgggctgtattgcccaggctggg-------------------------cttgaactcctgcgcccaagtgacccttccacctcagcctccctaagtgttgacattacaggcttgagcctc-------tgtg-------tctggcctcttattatt----------ttttattcatttattttttgagacagagtcttactc-tgttgcccaggctggagtgcagtggtgtgatcccagctgacagcaacctctacctcccgggtccagttgattgtcctgcctcagtctcctgaatagctgggattacaagcgcccaccacc-------aaacc---tttgggtttttcttc-ttttttgagacggagtcttgctccg
i macFas5.chr19             I 483 C 0
s papAnu2.chr19              47102228 414 +  51301725 acctca--tgatctgcccacctcagcctcccaaagtgccgggatgataggtgtgagccaccac-cctggcc-----ccatttttaaattgtttat-------agaCAGGGTtgtgctgtattgcccaggctggg-------------------------cttgaactcctgcgcCCAAGTGacccttctacctcagcctccctaagtgttgacattacaggcttgagcttc-------tgtg-------tctggcctcttattatt----------ttttatttatttattttgtgagacagagtcttactc-tgttgcccaggctggagtgcagtggtatgatcccagctgacagcaacctccacctcctgggtccagttgattgtcctgcctcagtctcctgaatagctgggattacaagcacccaccacc-------aaact---tttgggtttttcttctttttttgagacggagtcttgctccg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46809706 413 +  50890351 acctca--tgatctgcccacctcagcctcccaaagtgccaggatgataggtgtgagccaccac-cctggcc-----ccatttttaaattgcttat-------agacagggttgtgctgtatcgcccaggctggg-------------------------cttgaactcctgcgcccaagtgacccttccacctcagcctccctaagtattgacattacaggcttgagccgc-------tgtg-------tctggcctcttattatt----------ttttatttatttattttttgagacagagttttactc-tgttgcccagactggagtgcagtggtgtgatcccagctgacagcaacctccacctcccgggtccagttgattctcctgcctcagtctcctgaatagctgggattacaagcgcccaccact-------aaact---tttgggtttttcttc-ttttttgagacggagtcttgctccg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45383537 479 +  49145316 tgctcaagtgatccttccacctcagcctccctaagtgttgagattacaggcttcagccactgcgtctagccTCTTACTATAttttatttattcatgtttttgagatggagtctcactctgtcgcccaggctggagtgtgtgatttcagttcactgtgacctccacctcccaggtccaagtgattctcttgcctcagcctcttgggtagctgggat--caggcacctaccaccaAATTTTGTGGGGGTTTTTTGGTTGTTTGTTTTTTGAGACAGAGTCTCAttctttttttttttgagacggagtttcgctcttgttacccaggctggagtgcaatggctcaatctcggctcactgcaacctccgcctcctgggttcaggcaattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccacc-------atgcccagctaatttttgtattt-ttagtagagacggtgtttcaccttg
i calJac3.chr22             C 0 I 108
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I
e nomLeu3.chr10             102682427   3 - 106955855 I

a score=347375.000000
s hg38.chr19_GL949751v2_alt    107430 161 +   1002683 tcacccaggctggagtgcaatgacatggtcttggctcactgcaaactccgcctcccaggttgaagtgattctcctgcctcagcctcccgaatagctgggattacaggcgcccgccaccacgcctggctaatttt-gta-tttttagcagagacggggtttcac
s panTro4.chr19              59040935 161 +  63644993 ttacccaggctggagtgcaatgacgtggtctcggctcactgcaaactccgcctcccaggttgaagtgattctcctgcctcagcctcccgaatagctgggattacaggcgcccgccaccacgcctggctaatttt-gta-tttttagcagagacgggatttcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55918399 161 +  60714840 tcacccaggctggagtgcaatgacatggtcttggctcactgcaaactccgcctcccgggttgaagtgattctcctgcctcagcctccagaatagctgggattacaggcacccaccaccacgcctggctaatttt-gta-tttttaacaaagacggggtttcac
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59969185 162 +  64156825 tcacccaggctggagtgcagtggcgtggtcttggctcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaaatagctgggactgcaggcgcctgccaccacgcatggctaatttt-gtattttttatcagagacggggttttac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54987201 161 +  59248254 tcacccaggctggagtgcagtggcgtggtcttggctcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaaatagctgggactgcaggcgcctgccaccacgcatggctaatttt-gta-tttttatcagagacggggttttac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47102642 161 +  51301725 tcacccaggctggagtgcagtggcgtggtctcggctcactgcaagctccgcctcctgggttcacgccgttctcctgcctcagcctcccaaatagctgggactgcaggcgcccgccaccacgcatggctaatttt-gta-tttttatcagagacggagttttac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46810119 161 +  50890351 tcgcccaggctggagtgcagtggcgtggtctcggctcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaaatagctgggactgcaggcgcccgccaccacgcatggctaatttt-gta-tttttatcagagatggggttttac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45384124 161 +  49145316 ttgcccaggttacagtgcagtggcgagatctcagctcactgcaacctgtacctcccaggttcaagccattctgctgcctcagcctccccagtagct-ggactagaggtgcctgccagcatgcctggctaattttggta-tttttagtagaggtggagttttac
i calJac3.chr22             I 108 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I
e nomLeu3.chr10             102682427   3 - 106955855 I

a score=258690.000000
s hg38.chr19_GL949751v2_alt    107591 96 +   1002683 catttgggccaggctggtcttgaattgctgacctt--gtgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgacccaccgcgcccg
s panTro4.chr19              59041096 96 +  63644993 catgttggccaggctggtcttgaattgctgacctt--gtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgacccaccgcgccgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55918560 96 +  60714840 catgttggccaggctggtcttgaattgctgacctt--gtgatctgcccgcctcggcctcccaaagtgctgggattacaggtgcgacccaccgcgccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102682430 96 - 106955855 catgttggccaggctggtcttgaattgctgacctt--gtgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctg
i nomLeu3.chr10             I 3 C 0
s rheMac3.chr19              59969347 96 +  64156825 catgttgccccggctgctctccaactgctgacttc--atgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccacagtgcccg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54987362 96 +  59248254 catgttgcccaggctgatctccaactgctgacttc--atgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccacagtgcccg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47102803 96 +  51301725 catgttgcccaggctgatctccaactgctgacttc--atgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagctacggTGCCCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46810280 96 +  50890351 catgttgcccaggctgatctccaactgctgacttc--atgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccacagtgcccg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45384285 98 +  49145316 catattggccgggctggtcttgaacttctgacctcaaatgatctgtgtgcctcggtctcccaaagtgctagggttgctggtgttagccaccgcacctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I

a score=222472.000000
s hg38.chr19_GL949751v2_alt    107687 92 +   1002683 gccgagatggggttttaccatgttggccaggctggtctcgaactcctgacctcaaataa----tccgcctgcctcgtctcccaaagtgctgggatt
s panTro4.chr19              59041192 96 +  63644993 gccgagatggggttttaccatgttggccaggctggtctcgaactcctgacctcaaataatctgtctgcctgccttgcctcccaaagtgctgggatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55918656 92 +  60714840 gccaagatggggttttaccatgttggccaggctggtctcgaactcctgacctcaaataa----tccgcctgcctcgcctcccaaagtgctgggatt
i ponAbe2.chr19             C 0 M 1526
s nomLeu3.chr10             102682526 92 - 106955855 gccgagatggggttttaccacgttggccaggctggtctcgaactcctgacctcaaataa----tccacctgcctcgcctcccaaagtgctgggatt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59969443 92 +  64156825 gccgagatggggttttaccatgttggccaggctggtctccaactcctgacctcaaagaa----tctgcctgcttcgcctcgcaaagtgctgggatc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54987458 92 +  59248254 gccgagatggggttttaccatgttggccaggctggtctccaactcctgacctcaaagaa----tctgcctgcttcgcctggcaaagtgctgggatc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47102899 92 +  51301725 Gccgagatggggttttaccatgttggccaggctggtctccaactcctgacctcaaataa----tctgcctgcttcgcctcgcaaagtgctgggatt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46810376 92 +  50890351 gccgagatggggttttaccatgttggccaggctggtctccaactcctgacctcaaataa----tctgcctgcttcgcctcgcaaagtgctgggatt
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e calJac3.chr22              45384383  0 +  49145316 C

a score=22645.000000
s hg38.chr19_GL949751v2_alt    107779 13 +   1002683 acCCTGTGCCTGG
s panTro4.chr19              59041288 13 +  63644993 acCCTGTGCCTGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102682618 13 - 106955855 acCCTGTGCCTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59969535 13 +  64156825 acGCTGTGCCTGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54987550 13 +  59248254 acGCTGTGCCCGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47102991 13 +  51301725 acactgtgcctgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46810468 13 +  50890351 acaCTGTGCCTGG
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45384383  0 +  49145316 C

a score=1060010.000000
s hg38.chr19_GL949751v2_alt    107792 504 +   1002683 CCCAGCCTCTTATTTATAACCAGTGTTGAGGGACTGTGTGGAG-CCGGGCACAGGCGAAGCAGGCAGGCTTCCTGCCCTGGTAGGACCTGGTTGCTATAAAAG-TCCTGCCAGGTGAGCAGAAGGAGCACACTTCCCCTC---CCCTGACCTCCAGTCACTGAGTCTCGGGAACCGGGGCTCGGCCAGGAGCGCCTTTACTTGGACTGAGGGGAATGTGGCCTGCAGACAGTCAGGAGAG--TTTCC-----AGGGGACAGCAGGGGCTGTCCTAGCGGGTGGCATGAAACC---GTCTCCCTGGAGAGGTTAAGGAAGAGCAACTCCAGGGGTTCCATTTACTATGTGCTCCGGAGCTGGGCTACACGGTGGTACTAAGGAGGCAGCGCTAGTCACCTGACCTACAAGGTC-------GGGCTTCTGTTAGTTACCTAAGAGATGTTACCAGGACAAGCAGCAG-CCTGGTGGGAAGATGATGCCTCCAGGTCTCTACCTCCTCTCTCTCTCCCTCCTT--CTCTCCA
s panTro4.chr19              59041301 504 +  63644993 CCCAGCCTCTTATTTATAACCAGTGTTGAGGGACTGTGTGGAG-CCGGGCACAGGCGAAGCAGGCAGGCTTCCTGCCCTGGTAGGACCTGGTTGCTATAAAAG-TCCTGCCAGGTGAGCAGAAGGAGCACACTTCCCCTC---CCCTGACCTCCAGTCACTGAGTCTTGGGAACCGGGGCTCGGCCAGGAGCACCTTTACTTGGACTGAGGGGAATGTGGCCTGCAGACAGTCAGGAGAG--TTTCC-----AGGGGACAGCAGGGGCTATCCTAGCAGGTGGCATGAAACC---GTCTCCCTGGAGAGGTTAAGGAAGAGCAACTCCAGGGGTTCCATTTACTCTGTGCTCCAGAGCTGGGCTTCACGGTGGTACTAAGGAGGCAGCGCTAGTCACCTGACCTACAAGGTC-------AGGCTTCTGTTAGTTACCTAAGAGATGTTACCAGGACAAGCAGCAG-CCTGGTGGGAAGATGATGCCTCCAGGTCTCTACCTcctctctctctccctcctt--ctctcca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102682631 502 - 106955855 CCCAGCCTCTTATTTATAACCAGCTTTGGGGGGCTGTGTGGAG-CCGGGCACAGGTGAAGCAGGCAGGCTCCCTGCCCTGGTAGGACCTGGTTGCTATGACAG-TCCTGCCAGGTGAGCAGAAGGAGCACACTTCCCCTC---CCCTGACCTCCAATCACTGAGTCTTGGGAACCGGGGCTTGGCCAGGGGCACCTTTTCTTGGGCTGAGGGGAATGTGGCCTGCAGACAGTCGGGAGAG--TTTCC-----AGGGGACAGCAGGGGCTGTCCTAGCGGGTGGCATGAAACC---GTCTCCCTGGAGAGGTCATGGAAGAGCAACTCCAGGGCTTCCATTTACTCTGTGCTCCAGAGCTGGGCTTCACGGTGGCACTAAGGAGGCAGCGCTAGTCACCTGACCTACAAGGTC-------GGGCTTCTGTTAGTTACCTAAGAGATGTTACCAGGACAAGCAGCAG-CCTGGTGGGAAGATGATGCCCCCAGGTCTCCACCTC--ccctctctccctccct--ctctcca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59969548 505 +  64156825 CCCAGTCTCTTATTTATAACCAGTTTTGAGGGGCTGCGTGGAGTCCGGGCACGGGTGAAGCAGGCAGGCTGCCTGCTCTGATAGGACCTGGTTGCTCTGAAAGTTCCTGCCAGGTGAGCAGAAGGAGCACACGTCCCCTC---CCCTGACCTCCAGTCGTTGAATCTTGGGAACTGGGGCTTGGCCAGGGGCACCTTTACTTGGGTTGAGGGGAATGTGGCCTGCAGACAGTCGGGAGAA--TTTCCAGGTGAGGGGACGGCAGGGGCTGTCCTATCGGGCAGCATGAAACC---GTCTCCCTGGAGAGGTT----AAGAGCAACTCCAGGGGTTCCATTTACTCCGTGCTCCAGAGCTGGGCTTCACAGTGGTACTGAGGAGGCAGCGCTAGTCACCTGACCTACGAGGTC--------GGCTTC-GTTAGTTACCTAAGACATGTTACCAGGACAAGCAGCAG-CCTGGTGGGAAGACGATGCCTCCT--TCTCCACCTTccctccctctccctccctccctctcca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54987563 505 +  59248254 CCCAGTCTCTTATTTATAACCAGTTTTGAGGGGCTGCGTGGAGTCCGGGCACGGGTGAAGCAGGCAGGCTGCCTGCTCTGATAGGACCTGGTTGCTCTGAAAGTTCCTGCCAGGTGAGCAGAAGGAGCACACGTCCCCTC---CCCTGACCTCCAGTCATTGAATCTTGGGAACTGGGGCTTGGCCAGGGGCACCTTTACTTGGGTTGAGGGGAATGTGGCCTGCAGACAGTCGGGAGAA--TTTCCAGGTGAGGGGACGGCAGGGGCTGTCCTATCGGGCAGCATGAAACC---GTCTCCCTGGAGAGGTT----AAGAGCAACTCCAGGGGTTCCATTTACTCCGTGCTCCGGAGCTGGGCTTCACGGTGGTACTGAGGAGGCAGCGCTAGTCACCTGACCTACGAGGTC--------GGCTTC-GTTAGTTACCTAAGAGATGTTACCAGGACAAGCAGCAG-CCTGGTGGGAAGACGATGCCTCCT--TCTCCACCTTCCCTCCCTCTCCCTCCCTCCCTCTCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103004 494 +  51301725 cccggtCTCTTATTTATAACCAGTTTTGAGGGGCTGCGTGGAGTCCGGGCACGGGTGAAGCAGGCAGGCTGCCTGCTCTGATAGGACCTGGTTGCTCTGAAAGTTCCTGCCAGGTGAGCAGAAGGAGCACACTTccccccccGCCCCGACCTCCAGTCACTGAATCTTGGGAACCGGGGCTTGGCCAGGGGCACCTTTACTTGGGCTGAGGGGAACGTGGCCTGCAGATAGTCGGGAGAA--TTTCCAGGCGAGGGGACAGCAGGGGCTGTCCTATCGGGTGGCATGATACC---GTCTCCCTGGAGAGGTT----AAGAGCAACTCCAGGGGTTCCATTTACTCCGTGCTCCGGAGCTGGGCTTCACAGTGGTACTGAGGAGGCAGCGCTAGTCACCTGACCTATGAGGTC--------GGCTTC-GTTAGTTACCTATGAGATGTTACCAGGACAAGCAGCAG-CCTGGTGGGA--ACGatgcctccc--tct------------ctccaccttccctccctctcca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46810481 504 +  50890351 CCCGGTCTCTTATTTATAACCAGTTTTGAGGGACTGCGTGGAGTCCGGGCACGGGTGAAGCAGGCAGGCTGCCTGCTCTGATAGGACCTGGTTGCTCTGAAAGTTCCTGCCAGGTGAGCAGAAGGAGCACACTTCCCCCTC--CCCCGACCTCCAGTCATTGAGTCTTGGGAACCGGGGCTTGGCCAGGGGCACCTTTACTTGGGCTGAGGGGAATGTGGCCTGCAGACAGTCGGGAGAA--TTTCCAGGCGAGGGGACGGCAGGGGCTGTCCTATCGGGTGGCATGAAACC---ATCTCCCTGGAGAGGTT----AAGAGCAACTCCAGGGGTTCCATTTACTCCGTGCTCCGGAGCTGGGCTTCACAGTGGTACTGAGGAGGCAGCGCTAGTCACCTGACCTACGAGGTC--------GGCTTC-GTTAGTTACCTGAGAGATGTTACCAGGACAAGCAGCAG-CCTGGTGGGAAGATGATGcctccc--tctccacctcccctctctctccctccct--cTTTCCA
i chlSab2.chr6              C 0 I 129
s calJac3.chr22              45384383 499 +  49145316 cccAGCCTC--ATTTATAACCAGTGTGAAGCGGCTGTGTGCAGCCCTGGCAAAGGGAAAGCGGGCAGGCTCCCTGCCCTGGTAGGACCTGGTTGCTGTGAAAGCTGCTGCCAGGTGAGCAGCAGGAGCAC-------------ACCCGCCCTCCAGTCATGGAGTCTTGGTAACCGGGGCTCGGCCAGGGACACCTTTACTTGAGCTGAGGGGACTGTGGCCTGCAGACAGTCGGGAAAGGCTTTCCAGGAGAGGAGACAGCAGGGGCTGTCCTAGTGGGTGGCAGGAAACCGTGGTCTCCCTGGAAAGGTTAAGGAAGAGCAGCTCAAGGGGTTCCACTTACTCTGTGCTCCGGAGCTGGGCTTCACAGTGGTACTAAGGAGGCC---CTCGTCACCTGAGCTATGAGGTCCAGGTCGGGGCGTCTGTTAGTTACCTAAGGCATGTTACCAGGGCAGGCAGCAGCCCTGGTGGCAAGATGATGCCTCCACGTCTCCACCT----------TCCCTCTCT--CTCTCCA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I
e ponAbe2.chr19              55918748 1526 +  60714840 M

a score=134224.000000
s hg38.chr19_GL949751v2_alt    108296 131 +   1002683 CCT------CCCCTCTCTCTCCCTCCCTCTCTCCACCTCCCCTCTCTCT----CTTCCTCCCTCTCCACCTCCCCTCTCTCTCCCTCCCTCTCTCCACCTCCCCTCTCT------------------------CTCCCTCCCTCTCTCCACCTCCCCTCTCTCTC
s panTro4.chr19              59041805 155 +  63644993 cct------cccctctctccccctccctctctccacctcccctctctct----cttcctccctctccacctcccctctctctcttcttccctctccacctcccctctctctccctccctctctccacctccccctccctccctctctccacctcccctctctccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102683133 112 - 106955855 ccttcctcccctctctccctcccttcttctctccacctcccctct-----------------------------ctctccctccctccctctctccacctcccctctct------------------------ctccctcactctctccacctaccctctctccc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59970053 123 +  64156825 cct------cccctctccctcc------ctctccacctcccctctgtca----ccctccatctctccacctcccccctctctccctcc--ctctccacctcccctctgt------------------------caccctccatctctccacctcccctctctccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54988068 131 +  59248254 CCT------CCCCTCTCTCACCCTCCATCTCTCCACCTCCCCTCTCTCC----ACCTCCATCTCTCCACCTCCCCTCTCTCTCCCTCCCTCTCTCCACCTCCCCTCTCT------------------------CACCCTCCATCTCTCCACCTCCCCTCTCTCAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103498 125 +  51301725 cct------cccctctctctccctccctctctccacctcccctctctcaccctccctccctctctccacctcccctctctcaccctccctctctccatctt----------------------------------ccctccctctctccacctcccctctctcac
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45384882 112 +  49145316 --------CCTTTCCACAATTTCTCCCTCTTTCCATTTTCcctctctct----------------------accttccctctcccttcctctctacaccttccctctcc-----------------------ccaccacccctctccccaccttccctctccCTC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I
e ponAbe2.chr19              55918748 1526 +  60714840 M
e chlSab2.chr6               46810985 129 +  50890351 I

a score=629.000000
s hg38.chr19_GL949751v2_alt    108427 6 +   1002683 -TCCCTC
s panTro4.chr19              59041960 6 +  63644993 -tccctc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59970176 4 +  64156825 ---tccc
i rheMac3.chr19             C 0 M 2760
s macFas5.chr19              54988199 4 +  59248254 ---CCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103623 4 +  51301725 ---cctc
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45384994 7 +  49145316 TCTACTC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e ponAbe2.chr19              55918748 1526 +  60714840 M
e nomLeu3.chr10             102683245 0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I

a score=3964.000000
s hg38.chr19_GL949751v2_alt    108433 5 +   1002683 CCTCT
s panTro4.chr19              59041966 5 +  63644993 cctct
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54988203 5 +  59248254 CATCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103627 5 +  51301725 cctct
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45385001 5 +  49145316 CCTCT
i calJac3.chr22             C 0 M 968
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798 94 - 122678785 I
e ponAbe2.chr19              55918748 1526 +  60714840 M
e nomLeu3.chr10             102683245 0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=36823.000000
s hg38.chr19_GL949751v2_alt    108438 125 +   1002683 CTCCACCTCCCCT----------GTCTCCACCTCCCCTCC-----CTCTGTCCCTCCCTCTCTCCACCT-CCCCTCCCTCTGTCC-----------CTCCCTCTCTCCACCTCCCCTCTCT--CTCCCTCCCTCTCTCCACCTCCCCTCTCTCT
s panTro4.chr19              59041971 153 +  63644993 ctccacctaccctccctccctccgtctccaccttccctcctctctctccctccctccctctctcccacc-tccctccctctctccatctcccctctctccctctctccagctcccctctctccctccctccctctctccacctcccctctctct
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54988208 104 +  59248254 CTCCACCTCCCCTCTCT--------------------------------CACCCTCCATCTCTCCACCT-CCCCTCTCTCCCT---------------CCCTCTCTCCACCTCCCCTCTCT--CACCCTCCATCTCTCCACCTCCCCTCTCTCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103632 137 +  51301725 ctccaccttccctccctctctcgg--tccaccttcc---------ctcgctccctccctctccccacctgcccctccctccctct----ccccacctcccctttccccacttcccctctct--caccctccctcgctccacctcccctctctct
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605798  94 - 122678785 I
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683245   0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=7770.000000
s hg38.chr19_GL949751v2_alt    108563 18 +   1002683 CTTCCTCCCTCTCCACCT
s panTro4.chr19              59042124 14 +  63644993 ----cgctctctccacct
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54988312 18 +  59248254 CCCTCCCTCTCTCCACCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103769 18 +  51301725 gcctccctctctccacct
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19605892 18 - 122678785 CCTCCTACCTCTGCCCAT
i canFam3.chr1              I 94 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683245  0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=10926.000000
s hg38.chr19_GL949751v2_alt    108581 38 +   1002683 CCCCTCTCTCTCTTCCTCCCTCTCCACCTCCC--CTCTCT
s panTro4.chr19              59042138 32 +  63644993 cccctctccct--------ctctccacctcccctctctct
i panTro4.chr19             C 0 C 0
s macFas5.chr19              54988330 38 +  59248254 CCCCTCTCTCACCCTCCATCTCTCCACCTCCC--CTCTCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47103787 36 +  51301725 ctcctctct--ccctctctctctccagctccc--ctctct
i papAnu2.chr19             C 0 I 2
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683245  0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=15564.000000
s hg38.chr19_GL949751v2_alt    108619  98 +   1002683 CCCTCCCTCTCTCCACCTCCCCTG----------TCTCCACCTCCCCTCCCTCTGTCCCTCCCTCTCTCCACCTCCCCTCTCTCTGTCCCTCCCTCTCTCCACCTCCC
s panTro4.chr19              59042170 102 +  63644993 ccctctctctctccacctcccctctcttcctccttctccacctcccctctctc--tccctccctctctccacctcccctctc----tccctccctctctccacctccc
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47103825  76 +  51301725 ccctccctctctccagctcccctc----------tct------------------cacctccctctccccacctcccctctc----tccttccctctcctcacaTCCC
i papAnu2.chr19             I 2 I 143
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910   0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683245   0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I
e macFas5.chr19              54988368   0 +  59248254 C
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=-93.000000
s hg38.chr19_GL949751v2_alt    108717  9 +   1002683 C-------TCTCTCTG
s panTro4.chr19              59042272 16 +  63644993 ccccaccttccctctc
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683245  0 - 106955855 C
e chlSab2.chr6               46810985 129 +  50890351 I
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988368  0 +  59248254 C
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=8774.000000
s hg38.chr19_GL949751v2_alt    108726 36 +   1002683 TCCCTCCCTCTCTCCACCTCCCCTCTCTCTCCCTCC
s panTro4.chr19              59042288 36 +  63644993 tctctccctccctctacctcccctctccctccctcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102683245 36 - 106955855 tccctccctctctccACCTTCCCTCTCTCTCCCTCA
i nomLeu3.chr10             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e chlSab2.chr6               46810985 129 +  50890351 I
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988368  0 +  59248254 C
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=5304.000000
s hg38.chr19_GL949751v2_alt    108762 16 +   1002683 CTCTCTCCACCTCCCC
s panTro4.chr19              59042324 15 +  63644993 ctctctccacctacc-
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102683281 16 - 106955855 CTCTCTCCACCTCCCC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              54988368 16 +  59248254 CACCCTCCATCTCTCC
i macFas5.chr19             C 0 I 4
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e chlSab2.chr6               46810985 129 +  50890351 I
e papAnu2.chr19              47103901 143 +  51301725 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=7000.000000
s hg38.chr19_GL949751v2_alt    108778 32 +   1002683 TCTCTCTCCCTCCCTCTCTCCAC-----CTCCCCTCT
s panTro4.chr19              59042339 36 +  63644993 -ctccctccctccctctctccaccttcactcccctct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102683297 32 - 106955855 TCTCTCTCCCTCTCTCTCTCCAC-----CTACCCTCT
i nomLeu3.chr10             C 0 M 619
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e chlSab2.chr6               46810985 129 +  50890351 I
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988384  4 +  59248254 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=4684.000000
s hg38.chr19_GL949751v2_alt    108810 64 +   1002683 CTCTGTCCCTCCCTCTCTCCACCTCCCCTCT------CTCTCTCCCTCCCTC--TCCACCTCCCCTCTCTCC
s panTro4.chr19              59042375 72 +  63644993 ctccctccctccctctctccaccttccctctccccacctctctccctccctctgtccacctcccctctctcc
i panTro4.chr19             C 0 I 483
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e chlSab2.chr6               46810985 129 +  50890351 I
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988384  4 +  59248254 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=6999.000000
s hg38.chr19_GL949751v2_alt    108874  96 +   1002683 ACCTCCCCTCACTCCACCTTCCCTCTCTCTCCCTC--TCTCTCCTCCCCTCTCCCTCCCTCC----ACCTCCCCTCCCTCTCTCCACCTCCCCTCCCTCTCT
s panTro4.chr19              59042930 101 +  63644993 ccctccc-tctctccacctcccctctccctccctccctctctcctcccctctccctccctccctccacctcccctccctctctccacctcccctccttctct
i panTro4.chr19             I 483 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910   0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e chlSab2.chr6               46810985 129 +  50890351 I
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988384   4 +  59248254 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=16285.000000
s hg38.chr19_GL949751v2_alt    108970 100 +   1002683 CCCTCCCTCCCTCCCTCTCTCCACCTTCCCTCT----CCCTCCCTCCACCTTCCCTCT----CCCTCCCTCCACCTTCCCTCTCCCTCCCTC--TCCACCTTCCCTCTCT
s panTro4.chr19              59043031  75 +  63644993 ccctccctccctctctc-----------------------------caccttccctct----ccctccctccaccttccctctccctccctc--tccaccttccctctct
i panTro4.chr19             C 0 C 0
s chlSab2.chr6               46811114 110 +  50890351 CCCTCTCTCCCTCCCTCTCTTCACCTTCCCTCTCTCCCTCTCTCTCCACCTTCCCTCTCTCCCTCTCTCTCCAGCTCCCCTCTCCCTCTTTCTGTCCACCTTCCCTCTCT
i chlSab2.chr6              I 129 I 11
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910   0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988384   4 +  59248254 I
e rheMac3.chr19              59970180 2760 +  64156825 M

a score=9422.000000
s hg38.chr19_GL949751v2_alt    109070 27 +   1002683 CCTCCCCTCTCCCTCCCTCTCTCCACC
s panTro4.chr19              59043106 17 +  63644993 cc----------ctccctctctccacc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59973000 27 +  64156825 cctcccctcaccctccctctctccacc
i rheMac3.chr19             M 2760 I 5
s chlSab2.chr6               46811235 27 +  50890351 TCCCCTCTCTCCCTCCCTCTCTCCACC
i chlSab2.chr6              I 11 I 5
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e papAnu2.chr19              47103901 143 +  51301725 I
e macFas5.chr19              54988384  4 +  59248254 I

a score=3760.000000
s hg38.chr19_GL949751v2_alt    109097 6 +   1002683 TCCCCT
s panTro4.chr19              59043123 6 +  63644993 tcccct
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59973032 6 +  64156825 tctccc
i rheMac3.chr19             I 5 C 0
s papAnu2.chr19              47104044 6 +  51301725 tcttct
i papAnu2.chr19             I 143 C 0
s chlSab2.chr6               46811267 6 +  50890351 TCTCCC
i chlSab2.chr6              I 5 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910 0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e calJac3.chr22              45385006 968 +  49145316 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e macFas5.chr19              54988384 4 +  59248254 I

a score=27227.000000
s hg38.chr19_GL949751v2_alt    109103 42 +   1002683 CTCTCCCTCCCTCCC----TCCCTC----TCTCCACCTTCCCTCTCTCCC
s panTro4.chr19              59043129 45 +  63644993 ctctccctccctccc----tccctccctctctccacctatcctctctcc-
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59973038 42 +  64156825 cacctcccctcaccc----tccctc----tctccacctcccctctctctc
i rheMac3.chr19             C 0 I 17
s papAnu2.chr19              47104050 41 +  51301725 ttctttctctctccc----tccctg----tctccaccttccctctctcc-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46811273 46 +  50890351 CACCTCCCCTCTCTCACCGTCCCTC----TCTCCACCTCCCTTCTCTCTC
i chlSab2.chr6              C 0 I 17
s calJac3.chr22              45385976 36 +  49145316 ctcaccttcccttcc----tatctc----tctctaccttttctc------
i calJac3.chr22             M 968 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e macFas5.chr19              54988384  4 +  59248254 I

a score=6780.000000
s hg38.chr19_GL949751v2_alt    109145 9 +   1002683 TCCCTCTCT
s rheMac3.chr19              59973097 9 +  64156825 tccctctct
i rheMac3.chr19             I 17 C 0
s macFas5.chr19              54988388 9 +  59248254 TCCCTCTCT
i macFas5.chr19             I 4 C 0
s chlSab2.chr6               46811336 9 +  50890351 TCCCTCTCT
i chlSab2.chr6              I 17 C 0
s calJac3.chr22              45386012 7 +  49145316 --catctct
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910 0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M
e nomLeu3.chr10             102683329 619 - 106955855 M
e papAnu2.chr19              47104091 0 +  51301725 C
e panTro4.chr19              59043174 0 +  63644993 C

a score=31992.000000
s hg38.chr19_GL949751v2_alt    109154 23 +   1002683 CCACCTTCCCTCTCTCTCTCTCC
s panTro4.chr19              59043174 12 +  63644993 ------tccc-----ctctctcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102683948 21 - 106955855 ccaccttccc--tctctctctcc
i nomLeu3.chr10             M 619 C 0
s rheMac3.chr19              59973106 21 +  64156825 ccacctcccc--tcactctctcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54988397 21 +  59248254 CCACCTCCCC--TCACTCTCTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47104091 19 +  51301725 --acctcccc--tctctctctcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46811345 21 +  50890351 CCACCTCCCC--TCTCTCTCTCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45386019 20 +  49145316 ccgccttccc--tctctctccc-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19605910  0 - 122678785 C
e ponAbe2.chr19              55918748 1526 +  60714840 M

a score=311701.000000
s hg38.chr19_GL949751v2_alt    109177 126 +   1002683 CTCCCTCTCTCCAGCTCATGCTATCTGGGTCTCCCTCTGACTTTCTAGGTCCTGTCTGAGATTTTGCT--CTTTCTGTTCCCCTCTCTGGGCCTCCCCGTCACCACTCTGTGTATCTCTGGATCCCTG--
s panTro4.chr19              59043186 126 +  63644993 ctccctctctccAGCTCATGCTATCTGGGTCTCCCTCTGACTTTCTAGGTCCTGTCTGAGATTTTGCT--CTTTCTGTTCCCCTCTCTGGGCCTCCCTGTCACCACTCTGTGTATCTCTGGATCCCTG--
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102683969 126 - 106955855 ctccctctctccAGCTCATGCTTTCTGGGTCTCCCTCTGACTTTCTAGGTCCTGTCTGAGATTTTGCT--CTTTCTGTTCCCCGTTCTGGGCCTCCCCGTCACCACTCTGTGTGTCTCTGGATCCCTG--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59973127 126 +  64156825 ctccctctTTCCAGCTTATGCTATCTGGGTCTCCCTCTGACTTTTTAGGTCCTGTCTGAGATTTTGCT--CTTTTTGTTGCCCTCTCTGGGCCTCCCCGTCACCACTCTCTGTATCTCTGGATCCCTG--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54988418 126 +  59248254 CTCCCTCTTTCCAGCTCATGCTATCTGGGTCTCCCTCTGACTTTTTAGGTCCTGTCTGAGATTTTGCT--CTTTTTGTTCCCCTCTCTGGGCCTCCCCGTCACCACTCACTCTATCTCTGGATCCCTG--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47104110 126 +  51301725 ctccctctttccagcTCATGCTATCTGGGTCTCCCTCTGACTTTTTAGGTCCTGTCTGagattttgct--ctttttgttcccctctctgggcctccctgTCACCACTCTCTGTATCTCTGGATCCCTG--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46811366 126 +  50890351 CTCCCTCTTTCCAGCTCATGCTATCTGGGTCTCCCTCTGACTTTTTAGGTCCTGTCTGAGATTTTGCT--CTTTTTGTTCCCCTCTCTGGGCCTCCCCGTCACCACTCTCTGTATCTCTGGATCCCTG--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45386039 116 +  49145316 ---------tccgcctcatgctatctgggtctccctctGA-TTTCTAGGTCCTGTTTGAGATTTTGCT--GTTTCTATTCCCCTCTCTGGGCCTCCCTGTCACCACTCTGTGCATCTCTGGATCCCTG--
i calJac3.chr22             C 0 I 4
s canFam3.chr1               19605910 118 - 122678785 CTCCTGCCCTGCAGTTCACACTTTCT--------CTCTGGGGCTCTGG---CTGTCCGAGATCTATCTCCCTCTCTTTTCCTCTTTCTGGGCTGCCCT-CCACCCCCCACTGTCATACTTGCTCTGAGTG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e ponAbe2.chr19              55918748 1526 +  60714840 M

a score=1716115.000000
s hg38.chr19_GL949751v2_alt    109303 559 +   1002683 TCCTTCAACCCAGAGCTCTGTCTCTGGACCTCAG-TGGCAATCTC-TAAATCTCTCTCCTTCCTCAAGTCAAAAAGTCGACA-CACTCAGGAGGTTCCCTTGAGTGGCTGAACTACCCCAGGTTGTATAACTCAAGTCTGTTTTCTCAA--TGTTATCCCTGACCCTCTGGGTCAACCCTGTTTGAAAATGACAACCTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCCGTGGTCCACAACCCTGTTCAGAATCCCCCATCTCCCTTGGCCAAAATATCCGGCATCTACCAATGGGGCTGTGGCATGAGGGTGTCAATCTCAGGAAAGGAATCTTGAGTCGCCTGGGCCTGCAGCCCT----CGTACTTTCAGAAcagaggttctcagaatttaatgcgcttcagaattacactgag-gacttgttaaaa-catagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaaaatgtgcctttcaaacaagttcccaggtgatgggtacgtgcctgacccaaggccacatttcagaagcactgCTCTAGAAAA
s panTro4.chr19              59043312 559 +  63644993 TCCTTCAACCCAGAGCTCTGTCTCTGGACCTCAG-TGGCAATCTC-TAAATCTCTCTCCTTCCTAAAGTCAAAAAGTTGACA-CACCCAGGAGGTTCCCTTGAGTGGCTGAACTACCCCAGGTTGCATAACTCAAGTCTGTTTTCTCAA--TGTTATCCGTGACCCTCTGGGTCAACCCTGTTTGAAAATGACAAGTTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCCGTGGTCCACAACCCTGTTCAGAATCCCCCATCTCCCTTGGCCGAAATATCCGGCATCTACCAATGGGGCTGTGGCATGAGGGTGTGAATCTCAGGAAAGGAATCTCGAGTCGCCTGGGTCTGCAGCCCT----AGTACTTTCAGAAcagaggttctcaaaatttaatacgcttcagaattacactgag-ggcttgttaaaa-catagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaaaatgtgcctttcaaacaagttcccaggtgatgggtatgtgcctgacccaaggccacatttcagaagcactgCTCTAGAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55920282 560 +  60714840 TCCTTCAACCCAGAGCTCTGTCTCTGGACCTCAGTTGGCAATCTC-TAAATCTCTCTCCTTCCTCAAGTCAAAAAGTCGACA-CACCCAGGAGGTTCCTTTGAGTGGCTGAACTACCCCAGGTTGCATAACTCAAGTCTGTTTTCTCAA--TTTTATCCCTGACCCTGTGGGTCAACCCTGTTTGAAAATGACAACCTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCCATGGTCCACAATCCTGTTCAGAATCCCCCATCTCCCTTGGCCAAAATATCCGGCATCTACCAATGGGGCTGTGGCATGAGGGTGTGAATCTCAGGAAAGGAATCTTGAGTCACCTGGGCCTGCAGCCCT----AGTAGTCTCAGAAcagaggttctcaaaatttaatacgcttcagaattacactgag-ggcttgttaaaa-catagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaaaatgtgcctttcaaacaagttcccaggtgatgggtacgcgcctgacccaaggccacatttcagaagcactgCTGTAGCAAA
i ponAbe2.chr19             M 1526 C 0
s nomLeu3.chr10             102684095 555 - 106955855 TCCTTCAACCCAGAGCTCTGTCTCTGGACCTCAG-TGGCAATCTC-TGAA--TCTCTCCTTCCTCAAGTCAAAAAGTTGACA-CACCCAGGAGGTTCCTTTGAGTGGCTGAACTACCCCAGGTTGCATAACTCAAGTCTGTTTTCCCAA--TTTTATCCCTGACCCTCTGGGTCAACCCTGTTTGAAAATGACAACCTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCCGTGGTCCACAGCCCTGTTCAGAATCCCCCATCTCCCTTGGCCAAAATATCTGGCATCTACCAATGGGGCTGTGGCATGAGGGCGTGAATCTCAGGAAAGGAATCTTGAGTCACCTGGGCCTGCAGCCCT----AGTGCTCTAAGAAcagaggttctcaaaatttaatacgcttcagaattacaccaag-ggcttgttaaaa-catagttgctaggcccagagtttctgattc----agtctagggtggg-gctcaaaaatctgcctttcaaacaagttcccaggtgatgggtatgcgcctgacccaaggccacattgcagaagcactgCTCTAGAA--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59973253 550 +  64156825 TCCTTCATCCCAGAGCTCTGTCCCAGGACCTCAG-TGGCAATCTC-TGAATCTCTCTCCTCCCACAAGTCAAAAAGTCGACA-CACCTGGGAGCTTCCTT----TGGCCAAACTACCCCAGGTTGCCTAAGTCAAGTCTCTTTCCTCCA--TTTCATCCCTGACCCTTTGGGTCAACCCTGTTTGAAAATGACAGCCTTTGCTGATCTCTACATACTGTTCTGCCAGGGAAGGACCTGTGGTCCCCAGCTGTGTTCAGAATCTCTCATCTCCCTTGGCCAAAATATCTGGCATCTACCAATGGGGCTGTGGCACGAGGGTGTGAGTCTCAGGAAAGGAATCT-GAGTCACCTGGGCCTGCAGCCCT----GGTAC--TCAGAAcagaggttctccaaatttaatacgcttcagaatcacaccgag-ggcttgttaaaa-cacagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaagatgtgcatttcaaacaagttcccaggtgataggtatgcgcctgatccaaggccgcattggagaagccctgCTCTAGAA--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54988544 552 +  59248254 TCCTTCATCCCAGAGCTCTGTCTCAGGACCTCAG-TGGCAATCTC-TGAATCTCTCTCCTCCCGCAAGTCAAAAAGTCGACA-CACCTGGGAGCTTCCTT----TGGCCAAACTACCCCAGGTTGCCTAAGTCAAGTCTCTTTCCTCCA--TTTCATCCCTGACCCTTTGGGTCAACCCTGTTTGAAAATGACAGCCTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCTGTGGTCCCCAGCTGTGTTCAGAATCTCTCATCTCCCTCGGCCAAAATATCTGGCATCTACCAATGGGGCTGTGGCACGAGGGTGTGAGTCTCAGGAAAGGAATCT-GAGTCACCTGGGCCTGCAGCCCT----GGTAC--TCAGAAcagaggttctccaaatttaatacgcttcagaatcacaccgag-ggcttgttaaaa-cacagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaagatgtgcatttcaaacaagttcccaggtgataggtatgcgcctgatccaaggccgcatcggagaagccctgCTCTAGAAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47104236 555 +  51301725 TCCTTCATCCCAAAGCTCTGTCTCAGGACCTCAG-TGGCAATCTCTTgagtctctctcttccctcaagTCAAAAAGTCGACA-CCCCTGGGAGCTTCCTTTGAGTGGGCAAACTACCCCAGGTTGCCTAAGTCAAGTCTCTTTCCTCCA--TTTCATCCCTGACCCTTTGGGTCAACCCTGTTTGAAAATGACAGCCTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCTGTGGTCCCCAGCTCTGTTCAGAATCCCCCGTCTCCCTTGGCCAAAATATCTGGCATCTACCAATGGGGCTGTGGCACGAGGGTGTGAATCTCAGGAAAGGAATCT-GAGTCACCTGGGCCTGCAGCCCT----GGTAC--TCAGAACAGAGGTTCTCCAAATTTAATACGCTTCAGAATCACAccgag-ggcttgttaaaa-cacagttGCTGggcccagagtttctgattc----agtctaGGGTGGG-GCTCAAAGATGTGCATTTcaaacaagttcccaggtgataggTATGCGCCTGATCCAAGGCCGCACTGGAGAAGCCCTGCTCTAGAA--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46811492 555 +  50890351 TCCTTCATCCCAGAGCTCTGTCTCAGGACCTCAG-TGGCAATCTC-TGAATCTCTCTCCTCCCGCAAGTCAAAAAGTCGACA-CACCTGGGAGCTTCCTATGAGTGGCCAAACTACCCCAGGTTGCCTAAGTCAAGTCTCTTTCCTCCA--TTTCATCCCTGACCCTTTGGGTCAACCCTGTTTGAAAATGACAGCCTTTGCTGATCTCTACATACTGGTCTGCCAGGGAAGGACCTGTGGTCCCCAGCTCTGTTCAGAATCTCCCATCTCCCTTGGCCAAAATATCTGGCATCTACCAATGGGGCTGTGGCACGGGGGTGTGAATCTCAGGAAAGGAATCT-GAGTCACCTGGGCCTGCAGCCCT----AGTAC--TCAGAAcagaggttctccaaatttaatacgcttcagaatcacaccaag-ggcttgttaaaa-cacagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaagatgtgcattt-aaacaagttcccaggccataggtctgcgcctgatccaaggcctcatttgcgaagccctgCTCTAGAAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45386159 539 +  49145316 TCCTTCAACCCAGAGCTCTGTCTCTGGACCTCAG-TGACAATCTC-TGAATTTCTCTCCTCCCTCAAGTCAAAAAGTCATCA-TACCTGGGAGGCTCCTCTGAGTGGCCGAACTACCCCAGGATGCATAACTGAAGTCTGTTTCCTCAA--TTGTATCCCTGACCCTCTGAGTCAACCCCGTTTGGAAATGACAGC-------------------CTGGTCTGCCAGGGAAGGACTGGTGGTCCACAACACTGTTCAGAATCCCCCATCTCCCTCGGCCAAAATATCTGGCATCTACCAGTGGGGCTGTGGCATGAGGGTGTGAATCTCAGGAGAGGAATCT-GAGTCACGTGGCCCTGCGGCCCT----AGTGTGCTCAGAAcagaggttctcaaaatttaatacgcttcagaattctacagag-ggcttgttaaaa-catagttgctgggcccagagtttctgattc----agtctagggtggg-gctcaaaaatgtgcatttcaaacaagtttccaggtgatgggtatgtggctgatacaaggccacatttgagaaGCTTTGCTCTAGAAAA
i calJac3.chr22             I 4 C 0
s canFam3.chr1               19606028 494 - 122678785 TGTCTCAGTTCAGGGCTCACTCTGGGGACCTCAG-CAGC--TCTT-TGAACCTCTCCCCTCACATTAG------AGTCTCCATCACCTGGGAGATTCCTTCTAATGGCCAAATTACCCCAGGTCACGTCACT------TGGTTTCTCCAACTTTTATCCCTGAGCCTTTAGATCAGCCCTGTTGGAAAGTTAAAAACTTGGCTGATTGCTG---ATGAGTCTGCT--GGAAGGGTGCTCTGCCCGCTACTC--TTCACAACCTTCA--CCCACTTGTCCGGAG--------------------------------------------TCAAGAAAGG-ATCT-GACTCCTCTGGTGCTGCAGTCCTGCGAAGTCT--------Tagagattctcaaagcttaatatacttcag-attacccagggtggcttgttaaaaccaaggttgcagagtccagagtttctgcttccattggtctagggtgggaactcaaaagtgtggatttctagtaagttcccaggtgatgtttaggctgctgat-tgagacctcactggagaaccactgCCCTAGAAAA
i canFam3.chr1              C 0 I 136
e mm10.chr7                   3641526 2427 + 145441459 I

a score=1500.000000
s hg38.chr19_GL949751v2_alt    109862 1 +   1002683 G
s panTro4.chr19              59043871 1 +  63644993 G
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55920842 1 +  60714840 G
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              54989096 1 +  59248254 G
i macFas5.chr19             C 0 M 10062
s chlSab2.chr6               46812047 1 +  50890351 G
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45386698 1 +  49145316 G
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e nomLeu3.chr10             102684650 0 - 106955855 C
e papAnu2.chr19              47104791 0 +  51301725 C
e rheMac3.chr19              59973803 0 +  64156825 C

a score=172945.000000
s hg38.chr19_GL949751v2_alt    109863 94 +   1002683 AAGACTCTGTAAGCGGCTCTTACgctgggcgcg-----gtggctcacgcctgtaatcccagctacttgggaggctgaggtgggagaatggcttgaacct
s panTro4.chr19              59043872 94 +  63644993 AAGACTCTGTAAGTGGCTCTTATgctgggcgtg-----gtggctcacgcctgtaatcccagctacttggtaggctgaggcgggagaatggcttgaaccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55920843 94 +  60714840 AAGACTCTGTAAGTGGCTCTTACAccgggcgcg-----gtggctcacgcctgtaatcccagctacttgggaggctgaggcgggagaatcacttgaaccc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102684650 98 - 106955855 AAGACTCTGTAAGTGGCTC-TACGCCGGGCGCGTAAGTGTCTCTcacgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaaccc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59973803 93 +  64156825 AAGGCTCTGTAAGTGGCTCTCACGCT-GTcgcg-----gtggctcacgcatgtagtcccagctccttggcaggctgaggtaggagaatctcttgaatct
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47104791 93 +  51301725 AAGTCTCTGTAAGTGGCTCTCacgct-ggcgcg-----gtggctcacgcatgtagtcccagctccttgggaggctgaggtaggagaatcacttgaatct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46812048 90 +  50890351 ---TCTCTGTAAGTGGCTCTCACGCT-ggcgcg-----gtggctcatgcacgtagtcccagctccttgggaggctgaggtaggagaatcacttgaatct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45386699 86 +  49145316 -------TATAAGTGGCCCTTAggccaggtgca-----gtggcgcatgcctgtaatcctagctactcaggaggctgagacaggagaatcgcttgaacc-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e macFas5.chr19              54989097 10062 +  59248254 M

a score=80451.000000
s hg38.chr19_GL949751v2_alt    109957 53 +   1002683 gggaggcagaggttgcagtgagccgagatggcgcccctgcactccagcctggg
s panTro4.chr19              59043966 53 +  63644993 gggaggcagaggttgcagtgagccgagatggccccactgcactccagcatggg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102684748 53 - 106955855 gggaggcagaggttgcagtgagccgagatggcgccattgcactccagcctggg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59973896 44 +  64156825 gggag--------tgcagtgagccgagat-gcgccactgctctctagcctggg
i rheMac3.chr19             C 0 I 47
s papAnu2.chr19              47104884 53 +  51301725 gggaggtggaggttgcagtgagccgagatggcaccactgctctccagcctggg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46812138 53 +  50890351 gggaggcagaggttgcagtgagccgagatggcgccgctgctctccagcctggg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45386785 53 +  49145316 ggaaggcagaggtggcagtgaaccaagattgcgccactgcactccagcctgga
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e macFas5.chr19              54989097 10062 +  59248254 M

a score=528.000000
s hg38.chr19_GL949751v2_alt    110010 11 +   1002683 t-----gagagagACA
s panTro4.chr19              59044019 11 +  63644993 t-----gagagagACA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102684801 15 - 106955855 tg-acagagagagact
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47104937  9 +  51301725 -------agacagaca
i papAnu2.chr19             C 0 I 38
s chlSab2.chr6               46812191  9 +  50890351 -------agacaCACA
i chlSab2.chr6              C 0 I 20
s calJac3.chr22              45386838 15 +  49145316 -ccacagagtgagact
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e macFas5.chr19              54989097 10062 +  59248254 M
e rheMac3.chr19              59973940 47 +  64156825 I

a score=9341.000000
s hg38.chr19_GL949751v2_alt    110021 6 +   1002683 CTGGCT
s panTro4.chr19              59044030 6 +  63644993 CTGGCT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102684816 6 - 106955855 ccgtct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59973987 6 +  64156825 CTGGCT
i rheMac3.chr19             I 47 C 0
s papAnu2.chr19              47104984 6 +  51301725 CTGGCT
i papAnu2.chr19             I 38 C 0
s chlSab2.chr6               46812220 6 +  50890351 ctggct
i chlSab2.chr6              I 20 C 0
s calJac3.chr22              45386853 6 +  49145316 ctgtct
i calJac3.chr22             C 0 I 1589
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937 0 +  60714840 C
e macFas5.chr19              54989097 10062 +  59248254 M

a score=3000.000000
s hg38.chr19_GL949751v2_alt    110027 2 +   1002683 CC
s panTro4.chr19              59044036 2 +  63644993 CC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102684822 2 - 106955855 cc
i nomLeu3.chr10             C 0 M 1644
s rheMac3.chr19              59973993 2 +  64156825 CC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47104990 2 +  51301725 CC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46812226 2 +  50890351 cc
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937 0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e macFas5.chr19              54989097 10062 +  59248254 M

a score=48332.000000
s hg38.chr19_GL949751v2_alt    110029 68 +   1002683 CACCTCAAGATCGTTTTAGTTGGTCCAGTGTAAGCCTGGGTATCTGGACttttttattttttattttt
s panTro4.chr19              59044038 68 +  63644993 CACCTCGAGATTGTTTTAGTTGGTCCAGTGTAAGCCTGGGTATCTGGACttttttattttttattttt
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59973995 68 +  64156825 CACCTTGAGATTGTTTTAGTTGGTCTAGTGCAAGCCTGGCTATCTGGACTTCTTTTTTTTTTTTTTTT
i rheMac3.chr19             C 0 I 558
s papAnu2.chr19              47104992 64 +  51301725 TACCTCGAGATTGTTTTAGTTGGTCTAGTGCAAGCCTGGCTATCTggacttcactttttttttt----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46812228 65 +  50890351 cacctcgagattgttttagttggtctagtgcaagcctggctatctggacttCAtttttttttttt---
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e macFas5.chr19              54989097 10062 +  59248254 M

a score=121488.000000
s hg38.chr19_GL949751v2_alt    110097 270 +   1002683 attttttgagacggcgtcttgctctgtcacccaggctggagtgcaatggcgcaatctcgggtcactgcaacctctgcctcccaggttcaagtgattctcccgcctcagcctcccgagtagctgggattacaggcacatgccaccatgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggttttgaactccctacctcaggtgatccgcccacctcggcctctgagagtgctgggattacaggtg
s panTro4.chr19              59044106 270 +  63644993 tatttttgagacggcatcttgctctgtcacccaggctggagtgcaatggcgcaatctcgggtcactgcaatctctgcctcccgggttcaagtgattctcccgcctcagccctccgagtagctgggattacaggcgcctgccaccatgcccagctaattttcgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactccctacctcaggtgatcctcccacctcggcctctgagagtgctgggattacaggtg
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47105056 270 +  51301725 tttttttgagacgtagtcttgctctgtcacccaggctggggtgcagtggcacgatctcggctcactgcaacctccacctctcgagttcaagcaattcttgtgcctcaggttcccgagtagctgggattataagcgtgcgccatcacgcccggctaatttttgtaattttagtagacatggggtttcaccatgttggccaggctggtctcgaactcctggcctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaggcg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46812293 266 +  50890351 --ttttgggtacgtagtcttg--ctgtcacccaggctggagtgcagtggcacgatctcggctcacggcaacctccacctctcgagttcaagcgattctcatgcctcaggttcccgagcagctgggattacaagcgtgcgccatcacgcccggctaatttttgtacttttagtagacacggggtttcaccctgttggccaggctggtctcgaactcctggcctcaggtgatccgcccgcctcggcctcccaaagtgctgggattgcaggcg
i chlSab2.chr6              C 0 I 70
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937   0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e macFas5.chr19              54989097 10062 +  59248254 M
e rheMac3.chr19              59974063 558 +  64156825 I

a score=340.000000
s hg38.chr19_GL949751v2_alt    110367 3 +   1002683 caa
s panTro4.chr19              59044376 3 +  63644993 caa
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47105326 3 +  51301725 tga
i papAnu2.chr19             C 0 I 73
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937 0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e chlSab2.chr6               46812559 70 +  50890351 I
e macFas5.chr19              54989097 10062 +  59248254 M
e rheMac3.chr19              59974063 558 +  64156825 I

a score=9366.000000
s hg38.chr19_GL949751v2_alt    110370 117 +   1002683 tggcgcaatctaggctcactgcagcctctgcctcccgggttcaagtgattctcccggcccggcctGGCCTCTAATTTAAAAAAAATTTTTTTTTTTTAAA-GTTCCTCAGGTAggcca
s panTro4.chr19              59044379 118 +  63644993 tggcgcaatctaggctcactgcagcctctgcctcccgggttcaagtgattctcctggcccggccCAGCGTCtaattaaaaaaaaaagttttttttttaaaaGTTCCTCAGGTAggccg
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937   0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e chlSab2.chr6               46812559  70 +  50890351 I
e papAnu2.chr19              47105329  73 +  51301725 I
e macFas5.chr19              54989097 10062 +  59248254 M
e rheMac3.chr19              59974063 558 +  64156825 I

a score=2234.000000
s hg38.chr19_GL949751v2_alt    110487 10 +   1002683 ggcgcagtcg
s panTro4.chr19              59044497 10 +  63644993 ggcgcagtgg
i panTro4.chr19             C 0 I 1
s macFas5.chr19              54999164 10 +  59248254 ggcacagtgg
i macFas5.chr19             M 10062 I 1
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e chlSab2.chr6               46812559 70 +  50890351 I
e papAnu2.chr19              47105329 73 +  51301725 I
e rheMac3.chr19              59974063 558 +  64156825 I

a score=37810.000000
s hg38.chr19_GL949751v2_alt    110497 72 +   1002683 tcacgcctgtaatcccagcactttgggagactgaggcgagcggatcacctgaggtcaggagttcgacaccag
s panTro4.chr19              59044508 72 +  63644993 tcacgcctgtaatcccagcactttgggagactgaggcgggcggatcacctgaggtcaggagttcgagaccag
i panTro4.chr19             I 1 C 0
s macFas5.chr19              54999175 72 +  59248254 tcacacctgtaatcccagcactttgggaggccgaggtaggcggatcacctgaggccaggagttcgagaccag
i macFas5.chr19             I 1 C 0
s chlSab2.chr6               46812629 72 +  50890351 tcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggccaggagttcgagaccag
i chlSab2.chr6              I 70 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e papAnu2.chr19              47105329 73 +  51301725 I
e rheMac3.chr19              59974063 558 +  64156825 I

a score=21244.000000
s hg38.chr19_GL949751v2_alt    110569 27 +   1002683 cctggccaacatggtgaaaccccgtct
s panTro4.chr19              59044580 27 +  63644993 cctggccaacatggtgaaaccccgtct
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              59974621 27 +  64156825 cctggtcaatatggtgaaacccccact
i rheMac3.chr19             I 558 C 0
s macFas5.chr19              54999247 27 +  59248254 cctggtcaatatggtgaaacccccact
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46812701 27 +  50890351 cttggtcaacatggtgaaacccccact
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e nomLeu3.chr10             102684824 1644 - 106955855 M
e papAnu2.chr19              47105329 73 +  51301725 I

a score=118453.000000
s hg38.chr19_GL949751v2_alt    110596 93 +   1002683 ctactaaaaatacaaaaattagtcgggcgtggtggcgggcgcctgtaatcccagctactcgggaggct-------gaggcgggagaatcacttgaacccc
s panTro4.chr19              59044607 92 +  63644993 ctactaaaaatacaaaaattagtcgggcgtggtggcaggcacctgtaatcccagctactcgggaggct-------gaggcgggagaatcacttgaaccc-
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102686488 92 - 106955855 ctactaaaaatacaaaaattagtcgggtgtggtggcaggcgcctgtaatcccagctactcgggaggct-------gaggcgggagaatcacttgaaccc-
i nomLeu3.chr10             M 1644 C 0
s rheMac3.chr19              59974648 99 +  64156825 ctactaaaaatacaaaaattagtcgggcgtggtggcaggcgcctgtaatcccagctactcgggaggcgggaggctgaggcaggagaataacttgaaccc-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54999274 99 +  59248254 ctactaaaaatacaaaaattagtcgggcgtggtggcaggcgcctgtaatcccagctactcgggaggcgggaggctgaggcaggagaataacttgaaccc-
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46812728 92 +  50890351 ctactaaaaatacaaaaattagtcgggcgtggtggcgggcgcctgtaatcccagctactcgggaggca-------gaggcgggagaataacttgaaccc-
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e ponAbe2.chr19              55920937  0 +  60714840 C
e calJac3.chr22              45386859 1589 +  49145316 I
e papAnu2.chr19              47105329 73 +  51301725 I

a score=132028.000000
s hg38.chr19_GL949751v2_alt    110689 75 +   1002683 gggaggcagaggctgcagtgagcctagattgtgccactgctctccagcctgggggacaagagcaagtcttcgtct
s panTro4.chr19              59044699 75 +  63644993 gggaggcagaggctgcagtgagcctagattgtgccactgcactccagcctgggggacaagagcaagacttcgtct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55920937 75 +  60714840 gggaggcagaggctgcagtgagcctagattgtgccacagcactccagcctgcgggacaagagcaagacttcgtct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102686580 75 - 106955855 gggaggcaaaggctgcagtgagcctagattgcaccactgcactccagcctgggggacaagagcgagatatcgtct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59974747 75 +  64156825 gggaggcggagcttgcagtgagcctagattgtgtcattgcactccagcctgggggacaagagcaagacttcgtct
i rheMac3.chr19             C 0 I 9
s macFas5.chr19              54999373 75 +  59248254 gggaggcggagcttgcagtgagcctagattgtgtcattgcactccagcctgggggacaagagcaagacttcgtct
i macFas5.chr19             C 0 I 9
s chlSab2.chr6               46812820 75 +  50890351 gggaggcagagcttgcagtgagcctagattgtgtcattgcactccagcctgggggacaagagcaagacttcatct
i chlSab2.chr6              C 0 I 12
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e calJac3.chr22              45386859 1589 +  49145316 I
e papAnu2.chr19              47105329 73 +  51301725 I

a score=24414.000000
s hg38.chr19_GL949751v2_alt    110764 21 +   1002683 ---caacaacaacaacaataacaa
s panTro4.chr19              59044774 12 +  63644993 ---caacaacaacaa---------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55921012 18 +  60714840 ---caacaacaacaa---caacaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102686655 15 - 106955855 ---caacaacaacaa------caa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59974831 21 +  64156825 CACCAACAACAACAA---TAACAa
i rheMac3.chr19             I 9 C 0
s macFas5.chr19              54999457 21 +  59248254 CACCAACAACAACAA---TAACAa
i macFas5.chr19             I 9 C 0
s papAnu2.chr19              47105402 21 +  51301725 caccaccaacaataa---caacaa
i papAnu2.chr19             I 73 C 0
s chlSab2.chr6               46812907 21 +  50890351 caccagtaccaccaa---caacaa
i chlSab2.chr6              I 12 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e canFam3.chr1               19606522 136 - 122678785 I
e calJac3.chr22              45386859 1589 +  49145316 I

a score=264536.000000
s hg38.chr19_GL949751v2_alt    110785 108 +   1002683 caagttcctcaggtgactctg---atgtgcagccaagttgg-aaagtcatcg--CTAGATCCGCGGTGTGCAAAGTG--AACTGCGGACCGTG-----GACTGCGGCACTTGTTAGAAAAG
s panTro4.chr19              59044786 112 +  63644993 ---gttcctcaggtgactctg---atgtgcagccaagttgg-aaagtcatcg--CTAGATCCgcggtgtgcaaagtgtgaactgcggaccgtgtccgtcactggggcacttgttagaaaag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55921030 114 +  60714840 aaagttcctcaggtgactctg---atgtgcagccaagtttg-aaagtcaTCA--CTAGATccttggtgtgcaaagtgtgaactgtggaccgtgtacgtcactg-ggcacttgttagaaaag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102686670 116 - 106955855 aaagttcctcaggtgactctg---atgtgcagccaagtttgaaaaGTCATCA--CTAGATccttggtgtgcaaagtgtgaactgtggaccgtgtacatcactggggcacttgttagaaaag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59974852 117 +  64156825 aaagttcctcaggtgactgtg---atgtgcagccaagtttg-aaagtcaTCACTCTGGATCATTGGTGGGcaaagtgtgaactgtggaccatgtgcatcactggggcacttgttagaaaag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54999478 117 +  59248254 aaagttcctcaggtgactgtg---atgtgcagccaagtttg-aaagtcaTCACTCTGGATCATTGGTGGGcaaagtgtgaactgtggaccatgtgcatcactggggcacttgttagaaaag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47105423 117 +  51301725 aaagttcCTCAGGTGACTGTG---ATGTGCAGCCAAGTTTG-AAAGTCATCACTCTGGATCATTGGTGGGCAAAGTGTGAACTGTGGACCCTGTGCATCACTGGGGCACTTGTTAGAAAag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46812928 117 +  50890351 aaagttcctcaggtgactgtg---atatgcagccaagtttg-aaagtcaTCACTCTGGATCATTGGTGGGcaaagtgtgaactgtggaccgtgtgcatcactggggcacttgttagaaaag
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19606658 116 - 122678785 caagccacccagggtattgtagccacgtgcaaccaaatttg-agaaccactgCTCTGTATccttgctactcaaagtgccaactgtggagcatcagcatcacctggcaactcctgaat----
i canFam3.chr1              I 136 C 0
e mm10.chr7                   3641526 2427 + 145441459 I
e calJac3.chr22              45386859 1589 +  49145316 I

a score=302552.000000
s hg38.chr19_GL949751v2_alt    110893  99 +   1002683 Cagaatttgcattttaacacattcctaggtgattccggagatgtct--gagaagcgatactttgTCCAGGGGCCACAGTTTGAATAG---CAGAGCTCTAGAAC
s panTro4.chr19              59044898  80 +  63644993 cagaatttgcattttaacacattcctaggtgattccggagatgtct--gagaaacaatactttgTCCAGGTGCCACA----------------------AGAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55921144  99 +  60714840 cagaatttGCATTTTAACACATTGCTAGGTGATTCCGGAGATGTCT--GAGAAGCAATACTTTGTCCAGGGGCCACAATTTGAATAG---CAAAGCTCTAGAAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102686786  99 - 106955855 cagaatttGCATTTTAACACATTCCTAGGTGATTCCGGAGATGTCT--GAGCAGCAATACTTCGTCCAGGGGCCACAATTTGAATAG---CAAAGCTCTAGAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59974969  99 +  64156825 cagaatttgcattttaacacattcctaggtgattccggaggagtct--gagaagcactACTTTGTGCAGGGGCCACAATTTGAATAG---CAAAGCTCTAGAAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54999595  99 +  59248254 cagaatttgcattttaacacattcctaggtgattccggaggagtct--gagaagcactACTTTGTGCAGGGGCCACAATTTGAATAG---CAAAGCTCTAGAAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47105540  99 +  51301725 cagaatttgcattttaacacatTTCTAGGTGATTCCGGAGGAGTCT--GAGAAGCAATACTTTGTGCAGGGGCCACAATTTGAATAG---CAAAGCTCTAGAAC
i papAnu2.chr19             C 0 I 335
s chlSab2.chr6               46813045  99 +  50890351 cagaatttGCATTTTAACACATTCCTAGGTGATTCCGGAGGAGTCT--GAGAAGCAATACTTTGTGCAGGGGCCACAATTTGAATAG---CAAAGCTCTAGAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45388448  96 +  49145316 caaaatttgcatcttaacaagttccc---tgattccagggaagtct--gagaagcactACTTTGTCCAGGAACCACACTTTGAATAG---CAAAGCTCTAGAAc
i calJac3.chr22             I 1589 C 0
s canFam3.chr1               19606774 103 - 122678785 cagaatatgcattttaacaaatctccagttggttcCC-AGATGTCTGAGAGAGGCATTGCTCCATCCAGGGACCACACGTTGAAGAGTGTTGTGGCTCTAGATC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I

a score=84130.000000
s hg38.chr19_GL949751v2_alt    110992 37 +   1002683 AATAACT--------------------------------------------------------CTAGGCTTCATTCCCGTTGTCTGTGTGTGG
s panTro4.chr19              59044978 37 +  63644993 AATAACT--------------------------------------------------------GTAGGCTTCATTCCCGTTGTCTGTGTGTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55921243 37 +  60714840 AATAACT--------------------------------------------------------CCAGGCTTCATTCCCGTTGTCTGTGTGTGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102686885 37 - 106955855 AGTAACT--------------------------------------------------------CTAGGCTTCATTCCCGTCGTCTGTGTGTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59975068 37 +  64156825 AATAACT--------------------------------------------------------CTAGGCTTCATTCCCGTTGTCTGCATGTGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              54999694 37 +  59248254 AATAACT--------------------------------------------------------CTAGGCTTCATTCCCGTTGTCTGCATGTGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47105974 37 +  51301725 aataact--------------------------------------------------------ctagGCTTCATTCCCGTTGTCTGCATGTGA
i papAnu2.chr19             I 335 C 0
s chlSab2.chr6               46813144 37 +  50890351 AATAACT--------------------------------------------------------CTAGGCTTCATTCCCGTTGTCTGCATGTGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45388544 91 +  49145316 agtaactcccaaacggtaatgcacacggggatcacc--gggaagtctgtgaagatgcagatccccaggcttcattcccgttgtctgtgtgtgg
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19606877 91 - 122678785 AATGGCCATCCAACTccagtgagcatggggatcacccagggaagtgtgtaaaagtgcagacgtctaggcttcgctatctccatcggtgtag--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3641526 2427 + 145441459 I

a score=6001717.000000
s hg38.chr19_GL949751v2_alt    111029 1648 +   1002683 GCCTACGAATA-TGCATTTTCGCAAGCATTCCTCCTCCCCCTTGCCTCAGACCATTCTGATGCGGGTGGTGCTGAACGGCTCCATCCTCCTTCACGTTCACCTCTCCCTGGGATTTATCTTACTTTCCACCACCTAGACAGGAAGGGGCGAATCTGGCTTCCCATCTCGGTTGTGTG----ACCCTGGGCAAATGCCTCCCAGTTCGTGGAAGTCTCAGTGTCTAGTAAGTTTTCAATCACAAGTCATTCCTC--------------ACATTCATTCatctattcctttgacaaatggttactgactacttcctgcgtgctaagtgctggagatgcaaaATCCAGACAGGGAAAC-CGAATAATTACGAAAATGACGGTAGACGTACAAAAATAAATCCTAACGAACAAggcgcgcaggagcgctccgcccgggagggaggtcagggaagttttctctccaagaagacaacagagctgagacctgaaacgagcaggcattagggagccaccc------------------gtCTCCTCTGTACCTTCTGCAGCGTCCTCAACACACTAAGGAAGCGGAGACGCAGAGGAGAATGACTGTCCTACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCATGCCTCAC-GCTTCCCAACCAATTCTGCTATGCACGG---TGCCAGAGACTTA-AAGCAGTGTCTCTGGTCCCTTTCTTCTTTCACTC-------AGCAAATAATGAATTTCAGAGATGTGCCAACATAGAGGCACTTGGAGAAAGACGAGGCAGCTGAG----AGGGAAGCTGCTTACCTGGCCGGGACGCAACGGTTGCGACCAAGTCCCACTTCTGCCAGCTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAATGATAACTTTTAGGGCC-AACGAAGAAAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCACTTGGCCCTGTGGCTGTTTTGATTGGCAGATGACTTCGGCT--CGGCCCCCGCTTTAAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCCCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATGACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCGTAGCTCCTCCCCCAGACCAATTGTTTTAAGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GggaggaggaggaggagcggggaggaAA-ACCTGAGCCAATCCTAGCAGCCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCGATCACCCAATCCGCGAAAGGGGGCAGGGCGCATCCCTGCCAGGAACCAATAGAAAGCCTCCAAGGGTCAGGAGCGACGTTCAGCAGGAGCAATGACTGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGCCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGAGCCCCGACCCCC-------GTCGTC-AGAACAA
s panTro4.chr19              59045015 1648 +  63644993 GCCTACGAATA-TGCATTTTCGCAAGCATTCCTCCTCCCCCTCGCCTCAGACCATTCTGATGCGGGTGGTGCTGAACGGCTCCATCGTTTTTCACGTTCACCTCTCCCTGGGATTTATCTTACTTTCCACCACCTAGACAGGAAGGGGCGAATCTGGCTTCCCATCTCGGTTGTGTGTGTGACCCTGGGCAAATGCCTCCCAGTTCGTGGAAGCCTCAGTGTCTAGTAAGTTTTCAATCACAAGTCATTCCTC--------------ACATTCATCCatctattcctttgacaaatggttact----acttcctgcgtgctaagtgctggagatgcaaaATCCAGACAGGGAAAC-CGAATAATTACGAAAATGACGGTAGACGTACAAAAATAAATCCTAACGAACAAggcgcgcaggagcgctccgcccgggagggaggtcacggaagttttctctccaagaagacaacagagctgagacctgaaacgagcaggcgttagGGAGCCACCC------------------GTCTCCTCTGTACCTTCTGCAGCGTCCTCAACACACTAAGGAAGCGGAGATGCAGAGGAGAATGACTGTCCCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCATGCCTCAC-GCTTCCCAACCAATTCTGCTATGCACGG---TGCCAGAGACTTA-AAGCAGTGTCTCTGGTCCCTTTCTTCTTTCACTC-------AGCAAATAATGAATTTCAGACATGTGCCAACATAGAGGCACTTGGAGAAAGACGAGGCAGCTGAG----AGGGAAGCTGCTTACCTGGCCGGGACGCAAGGGTTGCGACCAAGTCCCACTTCTGCCAGCTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAACGATAACTGTTAGGGCC-AACGAAGAAAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCACTTGGCCCTGTGGCTGTTTTGATTGGCAGATGACTTCGGCT--CGGCCCCCGCTTTAAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCCCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATGACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCATAGCTCCTCCCCCAGACCAATTGTTTTAAGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GGGAGGAGGAGGAGGAGCGGGGAGGAAA-ACCTGAGCCAATCCTAGCAGGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCGATCACCCAATCCACGAAAGGGGGCAGGGCGCATCCCTGCCAGGAACCAATAGAAAGCCTCCAAGGGTCAGGAGCGACGTTCAGCGGGAGCAATGACTGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGCCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGAGCCCCGACCCCC-------GTCGTC-AGAACAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55921280 1642 +  60714840 GCCTACGAATA-TGCATTTTTGCAAGCATTCCTCCTCCCCCTTGCCTCAGACCATTCTGATGCGGGTGGTGCTGAACGGCTCCATACTTGTTCACGTTCACCTCTCCCTGGGATTTATCTGACTTTCCACCACCTAGACAGGAAGGGGCGGATCTGGCTTCCCATCTCGGTTGTGTG----ACCCTGGGCAAATGCCTCCCAGTTCGTGGAAGCCTCAGTGTCTAGTAAGTTTTGAATCTCAAGTCATTCCTC--------------ACATTCATTCatctattcctttgacaaatggttactgactacttcctgcgtgctaagtgctggagatgcaaaATCCAGAC--GGAAAC-CGAATAATTACGAAAATGACGGTAGACGTACAAAAATAAATCCTAACGAACAAagcgcgcaggagcgctccgcct----gggaggtcagggaagttttctctccaggaagacaacagagctgagacctgaaaccagcaggcattagGGAGCCACCC------------------GTCTCCTCTGTACCTTCTGCAGCGTCCTCAACACACTAAGGAAGCGGAGATGCA---GAGAATGACTGTCCCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCACGCTTCAC-GCTTCCCAACCAATTCTGCCATGCACGG---TGCCAGTGACTTA-AAGCAGTGTCTCTGGTCCCTTTCTTCTTTCACTC-------AGCAAATAATGAATTTCAGAGATGTGCCAACATAGAGGCACTTGGAGAAAGACGAGGCAGCTGAGAGACAGGGAAGCAGCTTACCTGGCCGGGACGCAAGGGTTGCGACCAAGTCCCACTTCTGCCAGCTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAATGATAACTGTTAGGACCAAACGAAGAGAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCACTTGGCCCAGTGGCTGTTTTGATTGGCAGATGACTTCGGCT--CGGCCCCCGCTTTAAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCCCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATGACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCGTAGCTCCTCCCCCAGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GGGAGGAGGAGGAGGAGCGGGGAGGAAA-ACCTGAGCCAATCCTAGCAGGCTGCGCGGGAGGCC-ATCGAACGCCGCG-CTTGGAGCTACCACCCAATCCGCGAAAGGGGGCAGGGCGCATCCCTTCCAGAAACCAATAGAACGCCTCCAAGGATCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGTCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGAGCCCCGACCCCC-------GTCGTC-AGAACAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102686922 1648 - 106955855 GCCTACGAATA-TGCATTTTAGCAAGCATTCCTCTTCCCCCTTGCCTCAGACCATTCTGATGC-GGTGGTGCTGAAGGGCTCCATACTTGTTCACGTTCACCTCTCCCTGGGGTTTATCTTATTTTCCACTACCTAGACAGGAAGGGGCGGATCTGGCTTCCCATCTCGGTTGTGTG----ACCCTGGGCAAATGCCTCCCAGTTCGTGGAAGCCTCAGTGTCTAATAAGTTTTCAATCACAAGTCATTCCTC--------------ACATTCATTCatctattcctttgacagatggttactgactacttcctgcgtgctaagtgctggaaatgcaaaATCCAGACAGGGAAAC-CGAGTAATTACGAAAATGACGGTAGACGTACAAAAATAAATCCTAACGAACAAggctcgcaggagcgctccgccc----gggaggtcagggaagttttctctccaagaagacgacagagctgagacctgaaacgagcaggcattagGGAGCCACCT------------------GTCTCCTCTGTACCTTCTGCAGCGTCCTCAACACACTAAGGAAGAGGAGATGCAGAGGAGAATGACTGTGTCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCTATGCCTCAC-GCTTCCCAACCAATTCTGCTATGCACGG---TGCCAGTGACTTA-CAGCAGTGTCTCTGGTCCCTTCCTTCTTTCACTC-------AGCAAATAATGAATTTCAGAGATGTGCCAACATAGAGGCACTTGGAGAAAGACGAGGCAGCTGAGAGACAGGGAAGCAGCTTACCTGGCCGGGACGCAAGGGTCGCGCCCAAGTCCCACTTCTGCCAGCTACATACACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCAAGCTATTGGTCAAACCAGCAGGAATGATAACTGTTAGGGCC-AACGAAGAGAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCACTTGGCCCAGTGGCTGTTTTGATTGGCAGATGATTTCGGCT--CGGCCCCCGCTTTGAAGGCACCTGTCTGTCTCCCATTAGGTACGCGTCCCCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATGACTTCCAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCCTAGCTCCTCCCCCCGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCAGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-Gggaggaggaggaggagcgggga-gAAA-ACCTGGGCCAATCCTAGCAGGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCGATCACCCAATCCGCGAAAGGGGGCAGGGCGCATCCCTGCCAGGAACCAATAGAACGCCTCCAAGGGTCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGCTTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGAGCCCCGACCCCC-------GTCGTC-AGAACAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59975105 1641 +  64156825 GCCTAAGAATA-TGGATTTTTGCAAGCGTTCCTCC-CTCTCTTGCCTCAGGCCATTCTGAT-------GTGCTGACCGACTCCGTACTTGTTCACGTTCACTTCTCTCTGGGATTTATCTTACTTTCCACCACCTAGACAGGAAGGGGAGGATCTGGCTTCCCATCTCGGTTGTGTG----ACCCTGGGCAAATGCCTCCGGGTTCGTGGAAGCCTCAGTGTCTAGTAAGTTTTCAATCACAAGTCATTCCTC--------------ACATTCATTCatctattcctttgacaaatggttaccgactacttcctgcgtgctaagtgctggagatgcaaaatccagacagggaaac-cgaataattacgaaaatgacgatagacgtgcaaaaataaattctaacgaacaaggcgcacaggagcgctccgccc----gggaggtcagggaagttttctccccaagaagatgacagagctgagacctgaaacgagcaggaattagggagccaccc------------------gtCTCCTCTGTACCTTCGGCGGCGTCCTCAACACGCTAAGGAAGCGGAGATGCAGAGGAGAATGACTCTCCCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCACGCCTCAC-GTTTCCCAACCAATTCTGCTATGCACGG---TGCTAGTGACTTA-AAGCACTGTCTCTGGTCCCTTCCTTCTTTCACTC-------AGCAAAT----AATTTCAGAGATGTGCCAACACGGAGGCACTTGGGGAAAGAAGAGGCAGCTGAGAGACAGGGAAGGAGCCTACCTGGCCAGGACGCAAGGGTTGCACCCAAGTTCCACTTCTGCCAGTTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAATGATAACCGTTAGGGCC-AACGAAGAGAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCCCTTGGCCCAGTGGCTGTTTTGATTGGCAGATGACTTCGGCT--CGGCCCCCGCTTTGAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCTCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATTACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCCTAGCTCCTCCCCGCGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GGGAGGAGGAGGAGGAGCGGGGAGGAAA-ACCTGAGCCAATCCTAGCAGGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCAATCACCCAATCCGCGAAAGGGGGCAGGGCACATCCCTGCCAGGAACCAATAGAACGCCTCCAAGGGTCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCAGAGACGAGACGAGAAGAGAGGAGGCCAGGCCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGATCCCCGACCCCC-------GTCGTC-AGAACAA
i rheMac3.chr19             C 0 M 434
s macFas5.chr19              54999731 1636 +  59248254 GCCTAAGAATA-TGGATTTTTGCAAGCGTTCCTCC-CTCTCTTGCCTCAGGCCATTCTGAT-------GTGCTGACCGACTCCGTACTTGTTCACGTTCACTTCTCTCTGGGATTTATCTTACTTTCCACCACCTAGACAGGAAGGGGCGGATCTGGCTTCCCATCTCGGTTGTGTG----ACCCTGGGCAAATGCCTCCGGGTTCGTGGAAGCCTCAGTGTCTAGTAAGTTTTCAATCACAAGTCATTCCTC--------------ACATTCATTCATCTATTCCTTTGACAAATGGttactgactacttcctgcgtgctaagtgctggagatgcaaaatccagacagggaaac-cgaataattacgaaaatgacggtagacgtgcaaaaataaattctaacgaacaaggcgcacaggagcgctccgccc----gggaggtcagggaagttttctccccaagaagatgagagagctgagacctgaaacgagcaggaattagGGAGCCACCC------------------GTCTCCTCTGTACCTTCGGCGGCGTCCTCAACACGCTAAGGAAGCGGAGATGCAGAGGAGAATGACTCTCCCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCACGCCTCAC-GTTTCCCAACCAATTCTGCTATGCACGG---TGCTAGTGACTTA-AAGCACTGTCTCTGGTCCCTTCCTTCTTTCACTC-------AGCAAAT----AATTTCAGAGATGTGCCAACACGGAGGCACTTGGGGAAAGAAGAGGCAGCTGAGAGACAGGGAAGGAGCCTACCTGGCCAGGACGCAAGGGTTGCGCCCAAGTTCCACTTCTGCCAGTTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAATGATAACCGTTAGGGCC-AACGAAGAGAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCCCTTGGCCCAGTGGCTGTTTTGATTGGCAGATGAGTTCGGCT--CGGCCCCCGCTTTGAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCTCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATTACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCCTAGCTCCTCCCCGCGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GggaggaggaggaggagcggggaggaAA-ACCTGAGCCAATCCTAGCAGGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCAATCACCCAATCCGCGAAAGGGGGCAGGGCACATCCCTGCCAGGAACCAATAGAACGCCTCCAAGGGTCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGCCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGATCCCCGAGCCCC-------GTCGTC-AGAACAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47106011 1633 +  51301725 GCCTAAGAATA-TGCATTTTTGCAAGCGTTCCTCC-CCCTCTTGCCTCAGGCCATTCTGAT-------GTGCTGACCGACTCCGTACTTACTCACCTTCACTTCTCTCTGGGATTTATCTTACTTTCCACCACCTAGACAGGAAGGGGCGGATCTGGCTTCCCATCTCGGTTGCGTG----ACCCTGGGCAAATGCCTCCCGGTTCGTGGAAGCCTCAGTGTCTAGTAAGTTTTCAATCACAAGTCATTCCTc--------------acattcattcatctgttcctTTGACAAATGGTTACTGACTACTTCCTGCGTGCTAAGTGCTGGAGATGCAAAATCCACATAGGGAAAC-CGAATAATTACGAAAATGACGGTAGACgtgcaaaaataaattctaacGAACAAGGCGCACAGGAGCGCTCCGCCC----GGGAGGTCAGGGAAGCTTTCTCCCCAAGAAGACAACAGAGCTGAGACCTGAAACGAGCAGGCATTAGGGAGCCACCC------------------GTCTCCTCTGTACCTTCTGCGGCGTCCTCAACACACTAAGGAAGCGGAGATGCAGAGGAGAATGACTCTCCCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCACGCCTCAC-GCTTCCCAACCAGTTCTGCTATGCACGG---TGCCAGTGACTTA-AAGCACTGTCTCTGGtcccttccttctttcactc-------agcaaat----aATTTCAGAGATGTGCCAACACAGAGGCACTTGGAGA---AAGAGGCAGCTGAGAGACAGGGAAGCAGCCTACCTGGCCGGGACGCAAGGGTTGCGCCCAAGTCCCACTTCTGCTAGTTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAATGATAACCGTTAGGGCC-AACGAAGAGAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCCCTTGGCCCAGTGGCTGTTTTGATTGGCAGATGACTTCGGCT--CGGCCCCCGCTTTGAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCTCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATTACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCCTAGCTCCTCCCCGCGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTgaggc-gggaggaggaggaggagcggggaggaAA-ACCTGAGCCAATCCTAGCAGGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCAATCACCCAATCCGCGAAAGGGGGCAGGGCACATCCCTGCCAGGAACCAATAGAACGCCTCCAAGGGTCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGAcgagaagagaggaggggaggcctCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGAGccccgaccccc-------gtcgtc-agaacaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46813181 1637 +  50890351 GCCTAAGAATA-TGCATTTTTGCAAGCGTTCCTCC-CCCTCTTGCCTCAGGCCATTCTGAT-------GTGCTGACCGACCCCGTACTTGTTCACGTTCACTTCTCTCTGGGATTTATCTTACTTTCCACCACCTAGACAGGAAGGGGCGGATCTGGCTTCCCATCTCGGTTGTGTG----ACCCTGGGCAAATGCCTCCGGGTTCGTGGAAGCCTCAGTGTCTAGTAGGTTTTCAATCACAAGTCATCCCTC--------------ACATTCATTCatctattcctttgacaaatggttactgactacttcctgcgtactaagtgctggagatgcaaaATCCACATAGGGAAAC-CGAATAATTACGAAAATGACGGTAGACGTGCAAAAATAAATTCTAACGAACAAGGCGCACAGAAGCGctccgccc----gggaggtcagggaagttttctccccaagaagacaacagagctgagacctgaaacgagcaggcattagGGAGCCACCC------------------GTCTCCTCTGTACCTTCTGCGGCGTCCTCAACACACTAAGGAAGCGGAGATGCAGAGGAGAATGACTCTCCCACCATCTGGTCGCCTAACCAGGCAGGGGCAGGACAAAAACTCCACGCCTCACGGTTTCCCAACCAATTCTGCTATGCACGG---TGCTAGTGACTTA-AAGCACTGCCTCTGGTCCCTTCCTTCTTTCACTC-------AGCAAAT----AATTTCAGAGATGTGCCAACACAGAGGCACTTGGAGAAAGAAGAGGCAGCTGAGAGACAGGAAAGCAGTCTACCTGGCCAGGACGCAAGGGTTGCGCCCAAGTCCCACTTCTGCCAGTTACAT--ACACCCTCTTTCACACGCTCTACGAGCAGCTACCGCCCACTCGCCACGCTATTGGTCAAACTAGCATGAATGATAACCGTTAGGGCC-AACGAAGAGAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCCCTTGGCCCAGTGGCTGTTTTGATTGGCAGATGACTTCGGCT--CGGCCCCCGCTTTGAAGGCACCTGTCTGTCTCCCATTAGGTACGCGGCCTCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATTACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACTGTCCTAGCTCCTCCCCGCGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGTTCGGGTCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GggaggaggaggaggagcggggaggaAA-ACCCGAGCCAATCCTAGCAGGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGCAATCACCCAATCCGCGAAAGGGGGCAGGGCACATCCCTGCCAGGAACCAATAGAACGCCTCCAAGGGTCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTCGGGACTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGTCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCTTGAGCCCCGACCCCC-------GTCGTC-AGAACAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45388635 1638 +  49145316 gcctaagaaaa-tgcatttttgcaagCACGCCTCC-CTCTCTTGCCTCAAGCCATTCTGATGCGGGTAGTGCTGAACGGCTCCACACTAGTTCACGTTCACTTCTGCCCTGGATTTCTCTTACCTCCCACCACCTAGAGAGGAAGGGGCGGATCTGGCTTCCCATCTCGACTGTGTG----ACCCTGGGCAAATGCCTCCCAGTTCGTGCAAGCCTCAGTGTCTAGAACGTTTTCAATCACAAGTCATTCCTC--------------ACATTCATTCatctattcctttggcaagtggttactggctacttcctgagtgcgaaatgctggagatacaaaATCCAGACAGTGAAAC-CGAATAATTACGAAAATGACGGTAGACGTGCAAAAATAAATCCTAAccagcaaggcgcacatgagcgctcaacac----gggaggtcagagaagttttctccctaagaagacaacggagctgagacctgaaacgaggaggcattagGGAGCCACCC------------------GACTCCGCTGTACCTTCTGCACCGTCCTCAACacagtaaggaaactgaggagca---gagaatgactgtcc--ccatctggtcacgtaacgaggcagaggcaggacaaaaactccatacctcgc-gcttcccaAGCAACTCTACTATGCACAA---TGCCAGTGGCTTAGAAGCACTATGTCTGGTCCCTTCCTTCTTTCACTC-------AGCAGATAATGAATTTCAGAGATGTGCCAACACAGAGGCACTTGGAGAAAGACGGGGCAACTGAGAGAGAGGG-AGCAGCCCTCCTGGCCGGGACGCAAGGGATGCGCCCAAGTCCCACGTCTGCCGACT------ACACCCTCTTTCACACGCTCTATGAGCAGCCACCGCCCACTCGCCACACTATTGGCCAAACTGGCCTGAATGATAACCCTCGGGGCC-AACGAAGATAAAGGGGTGGACTTTCTTGCCCAGCTCCTCCCCCTTGGCCCAGTGGCTGTTTTGATTGGCAGATAACTTCGGCT--CGGCCCCCGCTTTGAAGGCACCTGTCTGTCTCCCAGTAGGTACACGGCCCCTAACGCCCACACTCCATGCCTTCCTCCGCTTTCC-CCACCCACTTCCAGGACCAACCAATGACTTCAAGGCAGAATATGCCCCCGCAACCAATTAAAAAGAGCTCTAAACTTGACGGACGACTTCCCGCCCCTGGACCGTCCTAGCTCCTCCCCCGGACCAATTGTTTTAGGAGAGGGGGGCGGATACATCCAATCAGCACGACACAGGTCTCTTGATTGACGCTCGGGTCCTCGCGCTGGCGTGTTGTGCCCCGAGGC-GGGAGGAGGAGGAGGAGCCGGCAGGAAA-ACCTGAGCCAATCCTAGCAAGCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGTGATTACCCAATCCGCGAAAGGGGGCAGGGCACATCCCTACCAGGAACCAATAGAACGCCCCCAAAGGTCAGGAGCGACGTTCAGCGGGAGCAATGACAGGCCTATATTTGGGGCTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGCCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCGTCCCTTGAGCCCCGACCCCC-------GTCGTC-AGAACAA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3643953 1433 + 145441459 gccGAAGAATA-TGCCTTTTTATAAGCCATTTTTT-CTCTCTTGCTTCATGCCATTCTGAT-------GCGGTGAA-------ATGCACGTGCACGTTCTCTTCAAGTGTGGATTTATCTTCTTTTCCTCCACATAG-TAGGCAGAGATAGATCGAGTTTC-------------------------------------CCCAATTCATGAAAAC----GTGGTGCTCACGTTTGCAACCT--AGTCA-------------------------------------------GCAAAGGGCTATGGAGTGCTTCATGGGTACTAAAC------AACGAGAAATCCAGAGAGTGAGACTCAAGTATGTGTAAAAACGGCAGGAATCAAACAAAATTAAACC--------AGAGGCTCACCTAAGCACTCGGCAA----GGGTGGTCGGAGAAGTTTACTCCTTAAGAAG----CATAGC--AGAACTCTAGTGAGTAGTCATTACAGATGTAACCGAGGTAGGGCAAAGCGCAGTTTCCTCTACAGCT-----GGAGTCCTTGCAACTCCAGGGAAG-----------------------GTCCCA--GTCTGCTAACTTAACCAGAGA-------AACGTCAGTCCCACGCCTTGT-GTTTCTCAGTCGCTTCTGC--------------------------AA----TGTTCCTGATTCCTTCTTTCTTTCTTTCATCCTTTAGAAAGCACTGAGTTTTAGAGATATACCAA-GCAAACGCGCTTGGGGAATAACTACGAGGATCAGAT-------AACAGCCTA---GACAGGCAAAGGAAGGATGC--------------TCCGACAACCACAC---------------------CTGTCGGCAGGT------TAATAGCTACCCTATTGGCTAA--------------------------CC-GAGGGAAGGGGCGGGGTG------TTTGTCTAGCTCCTCCCCTTAGGGCTGGCGGCTCTTTTGATTGGTAGATGACTTGGGTTTACTATCCCCAACCCTCTGGCACCTCTCCGTCTCCCACTAGATAAGCTTCCTTTAACACTCACACGCTATGCTTTTTGTCGTTTTCCTCTACCCACATTCATAGCTAACCAATGAGTTCAGGGTAGAATACA-CCTCGCAACCAATTACAGCTGCCTTTAAACTTGACGAGTAACTTCCCGCCCCT----CACCCTGACTCCTCCCCGCTGCCAATTGATTTAGGGTAAGGGGGCGGACACATCCAATCAGCACGACACAGGCTTCCTGATTGACACCCAGGTCCTCGCGCTGGCGTGTTGTGCTCCGAGGAGGGGAGGAGGAGGAGGAGCTGGGAAGAAATACCCGAGCCAATCCAAGCAAGCTGAGCGGGAGGCCAATCGAACGCCGCGCCTTGCCGAGATCAGCCAATCATAATGAAGAGGTTGGCCTCATTCTCGCTAGGAACCAATGGGGCGCGCCTAACGGCGCAGAGCGACGTACTGCGGGAGCAATGACGGACCTATATTCGGGGCTCGGGGGCGGGCCGGCGCCA-----GAGAGGAGAAGAGAGGAGGGGAGG---CCTCCGCCGCCGCCATCTTGGACCGGGCCCGTTCAGCTTCCGTGGAGCCGTCGGCAGCCGCTGCCGGGCCTTTCCTTGATCCCTGAATCCCCTACTCGGTCGTCTAGAACAA
i mm10.chr7                 I 2427 C 0
s canFam3.chr1               19606968 1304 - 122678785 acctgggaacactgcgttttcacaaac---ccttc-ccctactttgccaggcgattccgat--------------gcaGCCC---------TCACTTGCAC--CCTCCTTGGATTTGTCCT--TCCCCAC---------------------------CTTCCCATCTAGACCGTCTG----ACCCTGGGCAAATGCCTCAGGGTTCGTGAAAGCACCAGTGCCTCCCGAGTCGTCGACCACAAGTCTTCCCTCGCATGCATGCACATGCATTCATTCATTCCTTCCCTGAGCCAACAGTTACTG---TGTTCCTGCG--------------GATGCCAGCTCCAGG-AGGGCAGC-C----------------------------------------------------GGGGCGCCGGAGGGCACAGGGC----G----------------------------------------------------------------------------------------------ATCTCCTGCGTATCCTCTGCATTGTCCTCACGACGCGGAGGAAGCGGACGTGCAG------------------------------------AGGCAG----------------------CTCCT-GTTCCCCCGCC------GCGGAGCGCGGATCTGCCGGT-------GACCACTGCCTC----------CCTCCTCCGATC-------TACAACC-CTGAGTCCGAAACATG---------AGAATCCC---------AAACAGGCAGCG-------AGAGGAGCA--CTACGCGCCCGGGAGCCAAG--------------------CCCGCCTGCT------ACGCCCGGTTTCACACGCCGCGAAGGCCGGTGCCGCCCCCTCGCTGCGCCCCTGGACTGGCCGCGGTGAGCGACAGCTGTCCTGGCC-AACGAGCGGAGAGGGGCGGGCCCGCCGGCCCAGCTCCGCCC-CGTGGCCCAGC-GCAGCTTTAATTGGCAGGCGACTTCGGCA----------------------CCTGTCCTCCTCCCATTAGGTGTAAGGCCTTTCACGCCCACGCTCCACGCCTGCCTCCGCTTTCC-CCACCCACTTCCGGAGCCAACCAATGGCCTCGGGGCAGAAGATCCCCTCACAACCAATTACAAACGGCCCTAAACTCGACGCCCGACTTCCCGCCCCT-GATCAGCCTGGCTCCTCCCCGCGGCCAATTGGTTTAGGAGAGGGGGGCGGGTGTATCCAATCAGCACGACAGTGGCGTCTTGATGGACGCGCGGGCCCTCGCGCTGGCGTGTTGTGCCCTGAGGC-GG--GGAGGAGGAGGAGCGGGGAGGAAA-ACCTGAGCCAATCCTAGTAGCCTGCGCGGGAGGCCAATCGAACGCCGCGCCTTGGAGGGATTGCCCAATCGGCGAGAGGGGGCCGGCTGCGTCCTGGCCAAAGACCAATAGGGTGCGACCGAAGGGCAAGAGCGACGTGCCGCCGGAGCAATCACAGGCCTGTGCACGGGGCTCGGGGGCGGGTCGGCGCCA-----GAGACGAGAAGAGAGGAGGGGAGGCCTCCTCCGCCGCCGCCATCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGC---GGCCTCCCCTGAGCCCCGA-CCCC-------GTCGTC-AGAACAA
i canFam3.chr1              C 0 C 0

a score=136755.000000
s hg38.chr19_GL949751v2_alt    112677 38 +   1002683 CCCC-GGGCCCACT--CC------------CCCAACCCCAC-TTCCG--CTTCGCG
s panTro4.chr19              59046663 38 +  63644993 CCCC-GGGCCCACT--CC------------CCCAACCCCAC-TTCCG--CTTCGCG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55922922 38 +  60714840 CCCC-GGGCCCACT--CC------------CCTAACCCCAC-TTCCG--CTTCGCG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102688570 40 - 106955855 CCCCGGGGCCCACT--CC------------CCCAACCCCACTTTCCG--CTTCGCG
i nomLeu3.chr10             C 0 M 635
s macFas5.chr19              55001367 38 +  59248254 CCCC-GGGCCCACT--CC------------CCCAACCCCAC-TTCCG--CTTCGCG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47107644 38 +  51301725 cccc-gggcccact--cc------------cccaaccccac-ttCCG--CTTCGCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46814818 38 +  50890351 CCCC-GGGCCCACT--CC------------CCCAACCCCAC-TTCCG--CTTCGCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45390273 38 +  49145316 CCCC-GGGCCCACT--CC------------CCCAACCCCAC-TTCCG--CTTCGCG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3645386 52 + 145441459 TCCC-GGGCCCACT--TCCTCTATCAACAACCCAACCCTAC-TTCCGGCTTTCGCG
i mm10.chr7                 C 0 I 2
s canFam3.chr1               19608272 40 - 122678785 CCCC-GGGCCCACTTCCC------------CCCCACCCCAC-TTCCG--CTTCGCG
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              59976746 434 +  64156825 M

a score=1206097.000000
s hg38.chr19_GL949751v2_alt    112715 490 +   1002683 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCTTCCTCCC-CCCGGCGCCATCGGCCGCCCTCCCCGCCGCCTCCCGCCCTGGCGACACCGCCGTCTGTCGCGACATGGCCTC--CCCT---CGCCTGCCCCCTGCCGCCGCCTCTG---CAGCGCGGGGCTCCCGGCGGGGGGCGGCTCCCTCCCTCTCGCCCTCCCGTTCCTGCGCCTCTTTCACGTTCCTCAGCGCCTCCCGGGGGTCCTTCCGCGACCCGGACCCCGGGCCCCGCCCGCCGCCGCCTCCCCGCGTGGCATCGCGTCGG-GCCCCCCGGTAGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
s panTro4.chr19              59046701 490 +  63644993 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCTTCCTCCC-CCCGGCGCCATCGGCCGCCCTCCCCGCCGCCTCCCGCCCTGGCGACACCGCCGTCTGTCGCGACATGGCCTC--CCCT---CGCCTGCCTCCTGCCGCCGCCTCTG---CAGCGCGGGGCTCCCGGCGGGGGGCGGCTCCCTCCCTCTCGCCCTCCCGTTCCTGCGCCTCTTTCACGTTCCTCAGCGCCTCCCGGGGGTCCTTCCGCGACCCGGAccccgggccccgcccgccgccgcctccccgcgTGGCATCGCGTCGG-GCCCCCCGGTAGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55922960 490 +  60714840 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCCTCCTCCC-CCCGGCGCCATCGGCCGCCCTCCCCGCCGCCTCCCGCCCTGGCGACACCGCCGTCTGTCGCGACATGGCCTC--CCCT---CGCCTGCCCCCTGCCGCCGCCTCTG---CAGCGCGGGGCTCCCGGCGGGGGGCGGCTCCCTCCCTCTCGCCCTCCCGTTCCTGCGCCTCTTTCACGCCCCTCAGCGCCTCCCGGGGGTCCTTCCGCGACCCGGAccccgggccccgcccgccgccgcctccccgcgTGGCATCGCGTCGG-GCCCCCCGGTAGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55001405 490 +  59248254 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCCTCCTCCC-CCCGGCGCCATCGGCCGCCCTTCCCGCAGCCTCCCGCCCTGGCGACACCGCCGTCTGTCGCGACATGGCCTC--CCCT---CGCCTGCCCCCTGCCGCCGCCTCTG---CAGCGCGGGGCTCCCGGCGGGGGGCGGctccctccctctcgccctcccgttcctccGCCTTTTTCACGCCCCTCAGCGCCGCCCGGGGGTCCTTCCGCGACCCGGACCCCGGGCCCCGCCCGCCGCCACCTCCCCGCGTGGCATCGCGTCGG-GCCCCCCGGTAGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47107682 490 +  51301725 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGgaccccttcccctcctccc-cccggcgccatcggccgcccttcccgcagcctcccgccctGGCGACACCGCCGTCTGTCGCGACATGGCCTC--CCCT---CGCCTGCCCCCTGCCGCCGCCTCTG---CAGCGCGGGGCTCCCGGCGGGGGGCGGCTCCCTCCCTCTCGCCCTCCCGTTCCTCCGCCTCTTTCAcgcccctcagcgccgcccgggggtccttccgcgacccggaccccgggccccgcccgccgccacctccccgcgtggcatcgcgtcgg-gccccccggTAGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46814856 490 +  50890351 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCCTCCTCCC-CCCGGCGCCATCGGCCGCCCTTCCCGCAGCCTCCCGCCCTGGCGACACCGCCGTCTGTCGCGACATGGCCTC--CCCT---CGCCTGCCCCCTGCCGCCGCCTCTG---CAGCGCCGGGCTCCCGGCGGGGGGCGGctccctccctctcgccctcccgttcctccGCCTCTTTCACGCCCCTCAGCGCCGCCCGGGGGTCCTTCCGCGACCCGGACCCCGGGCCCCGCCCGCCGCCACCTCCCCGCGTGGCATCGCGTCGG-GCCCCCCGGTAGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45390311 491 +  49145316 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGCGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCCTCCTCCCTCCCGGCACCATCGGCCACCCTCCTTGCCGCCTCCCGCCCTGGCGACACCGCCGTCTGTCGCGACATGGTCTC--TCCT---CGCCCGCCCCCTGCCGCCGCCTCTG---CAGCGCGGGGTTCCCCGCGGGGGGCGGctccctccctctcgccctcccgctcctccgcctccttcacgcccctcaccgccgcccGGGGGTCTTTCCGCGACCCGGAccccgggccccgcccgccgccgcctccccgcgTGGCATCGCGTCGG-GCCCCCCGGTGGGGGTGTGAGGGTGCGAAGCCTCCCGGGCGCGAGGTGCCCGCCCCTCTCCGCGTCGGTATTGGCTCCTGGCTG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3645440 406 + 145441459 CTCTTATCGCGATAGCGCCCGGGCTCGGGGCGCGAGGAAAGAGGAAAAAAAAAAAAAAAAAAGGCGGCGGGCGGGCGCTCGCCTCTCTCTCCCCCCTCCTCGCCTGTCGCGATACGCTCCGCAGCGGCGGCGCCAGCTCCTGCGGT--GAGCGTCAGGTTCGACTGGGCCGGACCCCTTTCCCTCTTCC--CTCAGCTCCATCGGCCG-----------ACTTCTTGCTCC-GCGACCCTGCTGCCTGTCGCGACACGGCCTCAGCTCC---CGCCGGGCCCAAGCCGCGCGCTCGGGCCCAGCTTCGG--CTCGGGCGGGCGGGGACCCTCTCC----------------------TCTCTCT------------------------GTCCTCCCGCG-TCCGGAC------------------------TCCCGCGTGGCAGAGCGCCGG---------------------------------CCCCGGGTGCGAGGTGCCCGTCCTCCTCCGCGTCTGGCTGGGCTTG------
i mm10.chr7                 I 2 C 0
s canFam3.chr1               19608312 375 - 122678785 CCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAG---------------------AAAAAGGC----GGCGGGTGCTCGCCTC------------CCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTGGTGAGAGCGTCAGGCTCGACTGGGCCGGACCCCTTCCCCTCCTCCC-CC--------------------------------------GGCGCCACCACCGCCTGTCGCGACATggccgc--ccccgcacccccggcccccgcgggcggACCTC---C-------GGCTCCCGGCAGG-GGCGgcccc-------------------------------------------ggcgcccgcc----gccctgcc----cccgccccccgtgcccccctcgtccgcgccccgcggcg-------gcgccggaggtcccccgcgggggtccggtggtg----------cgggcgcgcgggg-ccgccccTTTCCGCGTCGGGGGCGGC----GGCTC
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102688610 635 - 106955855 M
e rheMac3.chr19              59976746 434 +  64156825 M

a score=286512.000000
s hg38.chr19_GL949751v2_alt    113205 122 +   1002683 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTGCCTGCCCCCCTCGGCCTCGGTCCTTCGCGTTGTGGGGCAGCCTCCGCGCCGGGGCT-----TCTCCCTCGACGG
s panTro4.chr19              59047191 122 +  63644993 CAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTGCCTGCCCCCCTCGGCCTCGGTCCTTCGCGTTGTGGGGCAGCCTCCGCGCCGGGGCT-----TCTCCCTCGACGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55923450 122 +  60714840 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTGCCTGCCCCCCTCGGCCTCGATCCTTCGCGTTGTGGGGCAGCCTCCGCGCAGGGGCT-----TCTCCCTCGACGG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59977180 122 +  64156825 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTGCCTGCCCCCCTCGGCCTCGGTCCTTCGCGTTGGGGGGCAGCCTCCGCGCCGGGGCT-----TCTCTCTCGACGG
i rheMac3.chr19             M 434 C 0
s macFas5.chr19              55001895 122 +  59248254 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTGCCTGCCCCCCTCGGCCTCGGTCCTTCGCGTTGGGGGGCAGCCTCCGCGCCGGGGCT-----TCTCTCTCGACGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47108172 122 +  51301725 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTgcctgcccccctcggcctcggTCCTTCGCGTTGGGGGGCAGCCTCCGCGCCGGGGCT-----TCTCTCTCGACgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46815346 120 +  50890351 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTCGGGGCTCAGGTGCCTGCCCCCCTCGGCCTCGGTCCTTCGCGTTGGGGGGCAGCCTCCGCGCCGGGGCT-------TCTCTCGACGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45390802 124 +  49145316 GAAGGATGGAGGCGC--CCCTGGTCCCAGGTGCCCGCCCTCTC-GGGCTCAGGTGCCTGCCCCCCTCGCCTTCGGTCCCTCGCGTTG-GGGGCAGCCT-CGCGCTGGGGCTTCTCTTCTCCCTCGACGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3645846  38 + 145441459 GAGCGGTGGG----------------------------------------------------------------------CGCGCTGCGGG-------CCGCGGAGGGGTC-----TTTC---------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19608687  90 - 122678785 -GGGGAGGGGGTCTCCACCCCGGGGCCAGGTCCC---------------------CCTGCAccgcccgccgccggccccc----------ggcAGCCTCCGC--CAAAGTT-----TGCCCCGCAGCGG
i canFam3.chr1              C 0 I 263
e nomLeu3.chr10             102688610 635 - 106955855 M

a score=24866.000000
s hg38.chr19_GL949751v2_alt    113327 15 +   1002683 TGGCGGGGAGG--GGGG
s panTro4.chr19              59047313 15 +  63644993 TGGCGGGGAGG--GGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55923572 17 +  60714840 TGGCGGGGCGGGTGGTG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59977302 15 +  64156825 TGGCGGGGTGG--GGGG
i rheMac3.chr19             C 0 I 13
s macFas5.chr19              55002017 15 +  59248254 TGGCGGGGTGG--GGGG
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47108294 15 +  51301725 tggcggggtgg--gggg
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46815466 15 +  50890351 TGGCGGGGTGG--GGGG
i chlSab2.chr6              C 0 I 12
s calJac3.chr22              45390926 11 +  49145316 TAGCGTGGAGG------
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3645884  0 + 145441459 C
e canFam3.chr1               19608777 263 - 122678785 I
e nomLeu3.chr10             102688610 635 - 106955855 M

a score=2822.000000
s hg38.chr19_GL949751v2_alt    113342 7 +   1002683 GTGGTGG
s panTro4.chr19              59047328 7 +  63644993 GTGGTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55923589 7 +  60714840 GTGGTGG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55002033 7 +  59248254 GTGCCAA
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47108310 7 +  51301725 gTGCCAA
i papAnu2.chr19             I 1 C 0
s calJac3.chr22              45390937 7 +  49145316 GTGCCAG
i calJac3.chr22             C 0 I 4
s mm10.chr7                   3645884 3 + 145441459 -TGC---
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19608777 263 - 122678785 I
e nomLeu3.chr10             102688610 635 - 106955855 M
e chlSab2.chr6               46815481 12 +  50890351 I
e rheMac3.chr19              59977317 13 +  64156825 I

a score=650.000000
s hg38.chr19_GL949751v2_alt    113349 1 +   1002683 T
s panTro4.chr19              59047335 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55923596 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55002040 1 +  59248254 C
i macFas5.chr19             C 0 I 4
s papAnu2.chr19              47108317 1 +  51301725 C
i papAnu2.chr19             C 0 I 4
s chlSab2.chr6               46815493 1 +  50890351 C
i chlSab2.chr6              I 12 C 0
s calJac3.chr22              45390948 1 +  49145316 C
i calJac3.chr22             I 4 C 0
s mm10.chr7                   3645887 1 + 145441459 T
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19608777 263 - 122678785 I
e nomLeu3.chr10             102688610 635 - 106955855 M
e rheMac3.chr19              59977317 13 +  64156825 I

a score=3600.000000
s hg38.chr19_GL949751v2_alt    113350 1 +   1002683 C
s panTro4.chr19              59047336 1 +  63644993 C
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55923597 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59977330 1 +  64156825 C
i rheMac3.chr19             I 13 C 0
s macFas5.chr19              55002045 1 +  59248254 C
i macFas5.chr19             I 4 C 0
s papAnu2.chr19              47108322 1 +  51301725 C
i papAnu2.chr19             I 4 C 0
s chlSab2.chr6               46815494 1 +  50890351 C
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45390949 1 +  49145316 C
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3645888 1 + 145441459 C
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19608777 263 - 122678785 I
e nomLeu3.chr10             102688610 635 - 106955855 M

a score=2493823.000000
s hg38.chr19_GL949751v2_alt    113351 889 +   1002683 GGGACGAGGA-CCCCAGCTGGGTGGGGG-AGTCACCCTT-CCCAGGACCGAGG-CCGCCCTCCGCATCCCTCCTCACTG--CTCCCGGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCC---GTCTGTATCGGAT-GGGAGCCTCTTGGGAGAGGA--------GTGGAGGAGAAACTCCCC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCC--CTCTCATAGCGAGTAGCGCCCTGGGTGGCTCCAGCCTCGCCATCCCGCTGCACTGGGCGCCTGCCTTTTTGGGGGAGTTTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGTCTCAGCTCTCACACTTCTTTGATCCTGGCGTCT-----GCCCCTGGCTTTGCAGCCTTGAACTCCCCTGCATCGTGACTCTCCGACCTTCTGGGTGTGGGCGTCTCCCAGTGATATCAGG-ACCACTGTGGTCTTGTTGCTGGGGGCTGCTGGGATCCCCTGGCGCTCAGGTGCC--------------TGGT-GAAAGACACTAAG-CCGCCACGCTGTCCA-TGTT-AGTGAGCTCCCACTGCGGGCAGCACCAGCCCCTCTTTCTGAGCAGTCCCTGCCTCTCAGTGCAGGG-CGGCCACCCAC----CCCGGGGTGAGCTCTCCTGTCCTTTTGGTGAGGGGTTTTGATGTCTCCCCTCCCTCCCTTCACCCCTGCCTGAGTATGAGGCTTCTTCCATCTTCACACCAGTCTCCTCCTTTAGGGTGTCAGCTCTCCAAGGACCAAGAAGCCCACTGCCCTTGATATTTGCATCAGATCCCACACTGTGGGTTTGTTGACTTCCCATCTACCCTTA-----CGCTGGGTGTCAGCAGTT--GGAGAACAAGGGTTTCGCCTTCTGG
s panTro4.chr19              59047337 886 +  63644993 GGGACAAGGA-CCCCAGCTGGGTGGGGG-AGTCACCCTT-CCCAGGACCGAGG-CCGCCCTCCGCATCCCTCCTCACTG--CTCCCGGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCT---GTCTCTATCGGAT-GGGAGCCTCTTGGGAGAGGA--------GTGGAGGAGAAACTCCCC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCC--CTC--ATAGCGAGTAGCGCCCTGGGTGGCTCAAGCCTCGCCATCCCGCTGCACTGGGCGCCTGCCTTTT-GGGGGAGTTTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTCAGCTCTCACACTTCTTTGATCCTGGCGTCT-----GCCCCTGGCTTTGCAGCCTTGAACTCCCCTGCATCGTGACTCTCCGACCTTCTGGGTGTGGGCCTCTCCCAGTGATATCAGG-ACCACTGTGGTCTTGTTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCAGGTGCC--------------TGGT-GAAAGACACTAAG-CCCCCACGCTGTCCA-TGTT-AGTGAGCTCCCACTGCGGGCAGCACCAGCCCCTCTTTCTGAGCAGTCCCTGCCTCTCAGTGCAGGG-CGGCCACCCAC----CCCGGGGTGAGCTCTCCTGCCCTTTTGGTGAGGGGTTTTGATGTCTCCCCTCACTCCCTTCACCCCTGCCTGAGTATGAGGCTTCTTCCATTTTCACACCAGTCTCCTCCTCTAGGGTGTCATCTCTCCAAGGACCAAGAAGCCCACTGCCCTTGATATTTGCATCAGATCCCACACTGTGGGTTTGTTGACTTCCCATCTACCCTTA-----CGCTGGGTGTCAGCAGTT--GGAGAACAAGGGTTTCGCCTTCTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55923598 885 +  60714840 GGGACGAGGA-CCCCAGGTGGGTGGGGA-AGTCACCCTT--CCAGGACCGAGG-CCGCCCTCCGCATCCCTCCTCACTG--CTCCCGGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCC---GTCTGTATCGGAT-GGGAGCCTCTTGGGAGAAGA--------GTGGAGGAGAAACTCCCC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTTC--CTCTCCTAGCGAGTAGCGTCCTGGGTGGCTGAAGCCTCGCCATCCCGCTGCACCGGGCGCCTGCCTTTT-GGGGGAGTTTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTCAGCTCTCACACTTCTTTGATCCTGGCGTCT-----GCCCCTGGCTTTGCAGCCTTGAACTCCCCTGCATCCTAACTCTCCGACCTTCTGGGTGTGGGCCTCTCCCAGTGATATCAGG-ACCACTGTGGTCTTGGTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCGGGTGCC--------------TGGT-GAAGGACACTAAG-CCCCCACGCTGTCCA-TGTT-AGTGAGCTCCCACTGCGGGCAGCGCCAGCCCCTCTTTCTGAGCAGTCCCTGCCTCTCAGTGCAGGG-CGGCTACCCAC----CCCGGGGTGAGCTCTCCTGCCCTTTCGCTGAGGGGTTTTGATGTCTCCCCTCACTCCCTTCACCCCTGCCTGAGTATGTGGCTTCTTCCGCCTTCATATCAGTCTCCTCCTTTAGGGTGTCATCTCTCCAGGGACCAAGAAGCCCACTGCCCTTGATATTTGCATCAGATCCCACAC--TGGGTTTGTTGTCTTCCCATCTACCCTTA-----CGCTGGGTGTCCGCAGTT--GGAGAACAAGGATTTTGCCTTCCCG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102689255 913 - 106955855 GGAACGAGGA-CCCAAGCTGGGTGGGGGAAGTCACCCTTCCCCAGGGCCGAGGCCCGCCCTCCGCATCCCTCCTCACTGGCTCCCCGGGAGCGGCAGCCTCCCCTGGATCTCAGGGTTCCCAGCTGCCCG--GTCTGTATTGGATGGGGAGCCTCTTGGGAGAAGA--------GTGGAGGAGAAACTCCCC-------------------------ATTAGTTTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCT--CTCTCATAGCGAGTAGCGCCCTGGGTGGCTCAAGCATCGCCATCCCGCTGCACCTGGCGCCTGCCTTTT-GGGGGAGTTTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTCAGCTCTCACACTTCTTTGATCCTGGCGTCT-----GCTCCTGGCTTTGCAGCCTCAAACTCCCCTGCATCCTGACTCTCCGACCCTCTGGGTGTGGGCCTCTCCCAGTGATATCAGG-GCCACTGTGGTCTTGGTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCAGGTGCCTGGTGAAGGCTTCGTGGT-GAAGGACACTAAG-CCCCCACGCTGTCCA-TGTT-AGTGAGCTCCCAATGCGGGCAGCGCCAGCCCCTCTTTCTGAGCAGTCCCTGCCTCTCAGTGCAGGG-CGGCCACCCAC----CCCGGGGTGAGCTCTCCTGCCCTTTTGGTGAGGGGTTTTGATGTCTCCCCTCACTCCCTTCACCCCTGCCTGAGTATGAGGCTTCTTCCGCCTTCACACCAGTCTCCTCCTTTAGGGTGTCATCTCTCCAGGGACCAAGAAGCTCCCTGCCCTTGATATTTGCATCAGATCCCACACTGTGGGTTTGTTGTCTTCCCATCTACCCTTA-----CGCTGGGTGTCAGCAGTT--GGAGAACAAGGGTTTCGCCTTCCCG
i nomLeu3.chr10             M 635 C 0
s rheMac3.chr19              59977331 875 +  64156825 GGGACGAGGA-CCTCAGCGGGGTGGGGG-AGTCACCCTT-CCCAGGACCGAGG-CCACCCTCCGCATCCCTCCTCCGTG--CTCCCCGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCC---GTCCGTATCGGAT-GGGAGCCTCTTGGGAGAGGA--------GTGGAGGAGAAACTCCTC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCC--CTCTCGTAGCGAGAAGCGCCCTGGGTGGCTCAAGCCTCGCT-TCCCGCTGCACCGGGCGCCTGCCTTTT-GGGGGGGTCTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTCAGCTCTCACACTTCTTGGATAGTGCTGTCT-----GCCCCTGGCTTTGCAGCCTTGAACTCCCCTGCATCCTGACTCTCCGAC---CTGGGCGTGGGCCTCTCCCGGTGATGTCAGG-GCCACTGTGGTCTTGCTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCAGGTGCC--------------TGGT-GAAGGACACTAAGCCCCCCACGCTGTCCA-TGTT-AGTGAGCTCCCACTGCGGGCAGCGCCAGCCCCTCTTTCTGAGCAGTCCCTGCCGCTCAGTGCAGGG-CGGGCACCCCCCC-ACCCCAGGTGAGCTCTCCTGCCCTTTTGGTGAGGGGTTTTGATGTCTCCC---------TTCACCCCTGCCTG----TGAGGCTTCTTCTGCCTTCACACCAGTCTCCTCCTTTAGGATGTCATCTCTCCAGGGACCAAGAAGCCCACTGCCCTTGATATTTGCATCAGATCCCACACTGTGGGTTTGTTATCTTCCCATCTACCCTCA-----CACTGGGTGTCAGCAGTT--GGAGAACAAGGGTTTCGCTTTCCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55002046 874 +  59248254 GGGACGAGGA-CCTCAGCGGGGTGGGGG-AGTCACCCTT-CCCAGGACCGAGG-CCACCCTCCGCATCCCTCCTCAGTG--CTCCCCGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCC---GTCCGTATCGGAT-GGGAGCCTCTTGGGAGAGGA--------GTGGAGGAGAAACTCCTC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCC--CTCTCGTAGCGAGAAGCGCCCTGGGTGGCTCAAGCCTCGCT-TCCCGCTGCACCGGGCGCCTGCCTTTT-GGGGGGGTCTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTCAGCTCTCACACTTCTTGGATAGTGCTGTCT-----GCCCCTGGCTTTGCAGCCTTGAACTCCCCTGCATCCTGACTCTCCGAC---CTGGGTGTGGGCCTCTCCCGGTGATGTCAGG-GCCACTGTGGTCTTGCTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCAGGTGCC--------------TGGT-GAAGGACACTAAG-CCCCCATGCTGTCCA-TGTT-AGTGAGCTCCCACTGCGGGCAGCGCCAGCCCCTCTTTCTGAGCAGTCCCTGCCGCTCAGTGCAGGG-CGGGCACCCCCCC-ACCCCAGGTGAGCTCTCCTGCCCTTTTGGTGAGGGATTTTGATGTCTCCC---------TTCACCCCTGCCTG----TGAGGCTTCTTCTGCCTTCACACCAGTCTCCTCCTTTAGGATGTCATCTCTCCAGGGACCAAGAAGCCCACTGCCCTTGATATTTGCATCAGATCCCACACTGTGGGTTTGTTATCTTCCCATCTACCCTCA-----CACTGGGTGTCAGCAGTT--GGAGAACAAGGGTTTCGCTTTCCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47108323 871 +  51301725 GGGACGAGGA-CCTCAGCGGGGTGGGGG-AGTCACCCTT-CCCAGGACCGAGG-CCACCCTCCGCATCCCTCCTCACTG--CTCCCCGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCC---GTCCGTATCGGAT-GGGAGCCTCTTGGGAGAGGA--------GTGGAGGAGAAACTCCTC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCC--CTCTCGTAGCGAGAAGCGCCCTGGGTGGCTCAAGCCTCGCT-TCCCGCTGCCCCGGGCGCCTGCCTTTT-gggggggTCTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTGAGCTCTCACACTTCTTGGATAGTGCTGTCT-----GCCCCTGGctttgcagccttgaactcccctGCATCCTGACTCTCCGAC---CTGGGTGTGGGCCTCTCCCGGTGATGTCAGG-GCCACTGTGGTCTTGCTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCAGGTGCC--------------TGGT-GAAGGACACTAAG-CCCCCACGCTGTCCA-TGTT-AGTGAGCTCCCACTGCGGGCAGCGCCAGCCCCTCTTTCTGAGCAGTCCCTGCCTCTCAGTGCAGGG-CGGCCACCCAC----GCCGGGGTGAGCTCTTCTGCCCTTTTGGTGAGGGGTTTTGAAGTCTCCC---------TTCACCCCTGCCTG----TGAAGCCGCTTCTGCCTTCACACCAGTCTCCTCCTCTAGGGTGTCATCTCTCCAGGGACCAAGAAGCCCACTGCCCTTGATACTTGCATCAGATCCCACACTGTGGGTTTGTTGTCTTCCCATCTACCCTCA-----CACTGGGTGTCGGCAGTT--GGAGAACAAGGGTTTCGCTTTCCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46815495 875 +  50890351 GGGACGAGGA-CCTCAGCGGGGTGGGGG-AGTCACCCTT-CCCAGGACCGAGG-CCACCCTCCGCATCCCTCCTCACTG--CTCCCCGGAGC-GCAGCCTCCCCTGGATCTCAGG--TTCCAGCTGCCC---GTCCGTATCGGAT-GGGAGCCTCTTGGGAGAGGA--------GTGGAGGAGAAACTCCTC-------------------------GTTAG-TTGGAGCCTTTGCCGAAGTTTCCACCTCTGTAGTCTGCAGCTCTTCC--CTCTCGTAGCGAGAAGCGCCCTGGGTGGCTCAAGCCTCGCA-TCTCGCTGCACCGGGCGCCTGCCTTTT-GGGGGGGTCTGG------------------------------------------------------------CTTTCCCCCACCTGGGGTACAGGACCGTCCTCAGTGTGGCCCACGT-CTGGCCTCAGCTCTCACACTTCTTGGATCGTGGTGTCT-----GCCCCTGGCTTTGCAGCCTTGAACTCCCCTGCATTCTGACTCT--GAC---CTGGGTGTGGGCCTCTCCCGGTGATGTCAGG-GCCACTGTGGTCTTGCTGCTGGGGGCTGCTGGGCTCCCCTGGCGCTCAAGTGCC--------------TGGT-GAAGGACGCTAAG-CCCCCACGCTGTCCA-TGTT-AGTGAGCTTCCACTGCAAGCAGCGCCAGCCCCTCTTTCTGAGCAGTCCCTGCCTCTCAGTGCAGGG-CGGCCACCCAC----CCCGGGGTGAGCTCTCCTGCCCTTTTGGTGAGGGGTTTTGATGTCTCCCCTCACTCCTTTCACCCCTGCCTG----TGAGG---CTTCTGCCTTCACACCAGTCTCCTCCTTTAGGGTGTCATCTCTCCAGGGACCAAGAAGCCCACTGCCCTTGATATTTGCATCAGATCCCGCACTGTGGGTTTGTTGTCTTCCCATCTACCCTCA-----CACTGGGTGTCAGCAGTT--GGAGAACAAGGGTTTCGCTTTCCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45390950 847 +  49145316 GGGACGAGGACCCCCCCCTGGGTGCGGG-AGTCCCCCTT-CCCGGGGCCGAGG-CGGCCCCCTGCATCCGTCCGCACTG--CTCCCCGGAGC-GCAGCTTCCCCTGGACCTCGGG--TTGCAGCCGCCC---CTCCGTATCGGAC-----------------AGGA--------GTGGAGGAGAAACTCCGC-------------------------GCTAG-TTGGAGCCTCAGCCGAAGTTTCCAGCTCTGTAGTCTG-AGCAGTTCC--CTCTCTTAGCGAGAAGTGCCCTGGGCGGCTCAAGCCTCAGCATCCCG-------------CAGCCTTTC-CAGGGAGTCTGG------------------------------------------------------------CTTTCCTGGCACTGGGTTCCAGGACCGTCCTCGGTGTGGCCCCCGG-CTGGCCTCGGCTCTCACTCTT----GATTGTGGTGTCC-----GCCCCTGGCTTTGCAGAGGCGAACTCTCCTGCATCCTGACTCT--GACCTTCTGGGTGCGGGCCTCTCCCTGTGATGTCAGC-GCCACTGTGGTCCTGGCGCTGGGGGCTGCTGGGCTCCCCCAGCCCTCAGGTGCC--------------TGGT-GAAGGACACGAAG-CCCCCACACTTTCCA-CGTTAAGTCGGCTCC---------CAGCGCTAGCGCTTCTTTCTAGGCAGCCCCTGCTTCTCAGTGCAGCG-TGGTCACCCTCCCTCCCCGGGGTGAGCTCTCTTGGACTTTTGGTGAGGGGTGTTGGTGTCTTCC-TCACTCCCTTTGCCTCTGCCTGGGTATGAGGCTTCTTTCCCCTTCACACAAGTCTCCTCCTTTGGGGTGTCATCACTCCAGGGGCCAAGAGGCCCACTGCCCTTGCTGTTCGCATCAGATTCCCCACTGTGGGTTTGCTGACTT-CCGTCTACCCTCA-----CACTGGATGTCAGCAGTT--GGAGAACAAGGGTTGCGCCTCCCCA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3645889 842 + 145441459 ------------------TGGGCGCGGG-GCCCACTCCT-----GCAGTCATG-CCTTCCCCGGGAGCTC-----------CATTCGGGAGC-GTTGCCTCAGTGCACCCGAAAG--CTCCAGCTTGTTGGTGTCTTGATAGGG--GGAAGCCTCTTTGGAAGAGATGGATCTTGTGGAGGAAAAAGTCCCCAAGACCCGAGGGTGCAGTTAACGTTGTGAG-TTGGAGCCTAAGCCAAAGTTTCCACCT-----------AGTCCTTACAGCTCTAGCAGTGA--AGTCTCCTAGAGG---------------TCCCTTTCCACCA---ATCTTCTTTTT-AAGGAAGCATGGGGTTtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTGTTTTAACACTCCCTCCCCAAACCTTGGATTCAGGACTGTACC--GTATTGCTCACTTCCTGGCTTCACATCTTTTGCATCTTTGA-GGTGGGGTATCAGTGGACTCTAGCTTTGGGGATGCAGGCTCCACTAC-----GATGCACGGTCTGCCTCGGTGGGTGAAGCTTCCTAAGTGGTTAGGTATTGCTGTG-----TGTGGTGAGGACCGCTTAGCTTTTCT----TTCTAGATCT--------------GGGTCGGTGGAATGCGAG-CTCCCATGCTTTCAGTTGTT-GGTGCTCTTCTGTTG-GGACAGTTGAAGCAC----TTCTAAACAG---CTGTATCTCGGTTCCGGGACTGTCATCCCT----CTTAGGATTAGCT-TTCTGTTCTTTTGGCTAGGGGCTT-----CCTCAC--------CGTCTCCCTTCCCCG-------------------------------GTCATCACCTGGACTGCCATCTCTCTG--------------------TATTTCCATTCTCATCTGCCCAGCCTATGTGGATATGTGATCTT-----TTATAATTGAAATCCACTGGGTGAAAGCGTTTCAGAGGTAGAATGGT----CCATCTCA
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19608777 263 - 122678785 I

a score=1828067.000000
s hg38.chr19_GL949751v2_alt    114240 562 +   1002683 CCCCGCTGCTGGTACCCCATGAGAGTAGGAAGCTTCCTAGACCCG------GGTTCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTCACCTCCCCCAGGGATAAGGTTCTTGCCATCCTTGGTATTGGTATGG-CTGCTTTTCTGGATTTGAGGTGTCCACGCCTCTGCATGTGTCCCCACCGTAAGGCTGAGGACCCCTCTCGGATGCAGGTGCCCCCGGCTCATGCTTCCAAAACCCCCTCTTGATTTGTCACTGTATGGGGTAAGGCATAGTTTCCTG-GCTGTGTGGATGTAAGATACCTGAGTCTCAAGCGGGAGACTC-CACTGTAGACCCTGTCCCTGGGAC-CAGAGACTTCTCTGGTGTAGAC-TTTCCAAGGTGGGAGATTCCAGCCCCCCACCCTTGGCATGGGGCATCTC-AGT--------------GGAGATGACTACCTCTACCCCAGGCCCTAACGCATCCTTCTTCTGGAGTCTCAGAGCCTCTGTGTGGCCACGTCAGCAGCCAC----CTGGGTTAAGGATCACCCTTCA
s panTro4.chr19              59048223 562 +  63644993 CCCCGCTGCTGGTACCCCATGAGAGTAGGAAGCTTCCTAGACCCG------GGTTCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTCACCTCCCCCAGGGATAAGGTTCTTGCCATCCTTGGTATTGGTATGG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTGCGTGTGTCCCCACCGTAAGGCTGAGGACCCCTCTCGGATGCAGGTGCCCCCGGCTAATGCTTCCAAAACCCACTCTTGATTTTTCACTGTATGGGGTAAGGCATAGTTTCCTG-GCTGTGTGGATGTAAGATACCTGAGTCTCAAGCGGGAGACTC-CACTGTAGACCCTGTCCCTTGGAC-CAGAGACTTCTCTGGTGTAGAC-TTTCCAAGGTGGGAGTTTCCAGCCCCCCACCCTTGGCATGGGGCATCTC-AGT--------------GGAGATGACTACCTCTACCCCAGGCCCTAACGCATCCTTCTTCTGGAGTCTCAGAGCCTCTGTGTGGCCACGTCAGCAGCCAC----CTGGGTTAAGGATCACCCTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55924483 562 +  60714840 CCCCGCTGCTGGTACCCCGTGAGAGTAGGAAGCTTCCTAGACCCG------GGTTCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTCGCCTCCCCCAGGGATAAGATTCTTGCCATCCTTGGTATTGGTACGG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTGCGTGTGTCCCCATCGTAAGGCTGAGGACCCCTCTCGGATGCAGGTTCCCCCGGCTAATGCTTCCAAAACCCCCTCTTGATTTTTCACTGTATGGGGTAAGGCATAGTTTCCTG-GCTGTGTGGATGTAAGATACCTAAGTCTCAAGCAGGAGACTC-CACTGTAGACCCCGTCCCTGGGAC-CAGAGATTTCTCTGGTGTAGAC-TTTCCAAGGTAGGAGTTTCCAGCCCCCCACCCTTGGCATGGGGCATCTC-AGT--------------GGAGATGACTACCTCTACCCCAGGCTCTAACGCGTCCTCCTTCTAGAGTCTCAGAGCCTCTGTGTGACCACATCAGCAGCCAC----CCGGGTTTAGGATCACCCTTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102690168 559 - 106955855 CCCCGCTGCTGGTACCCCATGAGAGTAGGAAGCTTCCTAGACTCG------GGTCCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTCGCCTCCCCCAGGGATAAGGTTCTTGCTATCCTTGGTATTGGTATGG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTGCGTGTGTCCCCACCATAAGGCTGAGGACCCCTCTCGGATGCAGGTGCCCCTGGCTAATGCTTCCAAAACCCCCTCTTGATTTTTCACTGTATGGGGTAAGGCATGATTTCCTG-GCTGCGTGGATGTAAGATACCTGAG--TCAAGCGGGAGACTC-CCCTGTAGACCCGGTCCCTGGGAC-CAGAGATTTCTCTGGTGCAGAC-TTTCCAAGGTAGGAGTATCCAGCCCCCTACCCTTGGCATGGGG-ATCTC-AGT--------------GGAGATGACTACCTCTACCCCAGGCCCTAACGCATCCTCCTTCCAGAGTCTCAGAGCCTCTGTGTGGCCACGTCAGCAGCCAC----CCGGGTTAAGGATCACCCTCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59978206 561 +  64156825 CCCCGCTGCTGGTACTCCATGGGAGTAGGAAGCTTCCTAGACCCG------GGTTCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAGGGACCCTTTCTTGGTGTTGCCTACCCCAGGGATAAGGTTCTTGCCATCCTTGGTATTGGTACGG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTACGTGTGTCCCCACCGTAAGGCTGAGGATCCCTCCCGGATGCAGGTGCCCCCGGCTAATGCTTCCAAAACCCCGTCTTGATTTTTCACTGTATGGGGTAAGGCATAGTTGCCTG-GCTGTGTGGATGTAAGATACCTGAGTCTCAAGCGGGAGACTC-CACTGTGGACCCCGTCCCTGGGAC-CAGAGACTTCTCTGGTGTAGAC-TTTCCAAAGTAGGAGTTTCCAGCCCCCAACCCTTGGCA-GGGGCATCTC-AGT--------------GGAGATGACTACCTCCACCCCAGGCCCTAACGCATCCTCCTTCTAGAGTCTCAGAGCCTCTGTGTGGCCATGTCAGCAGCCAC----CCAGGTTAAGGATCACCCTTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55002920 561 +  59248254 CCCCGCTGCTGGTACTCCATGGGAGTAGGAAGCTTCCTAGACCCG------GGTTCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTTGCCTCCCCCAGGGATAAGGTTCTTGCCATCCTTGGTATTGGTACGG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTACGTGTGTCCCCACCGTAAGGCTGAGGATCCCTCTCGGATGCAGGTGCCCCCGGCTAATGCTTCCAAAACCCCGTCTTGATTTTTCACTGTATGGGGTAAGGCATAGTTGCCTG-GCTGTGTGGATGTAAGATACCGGAGTCTCAAGCGGGAGACTC-CACTGTGGACCCCGTCCCTGGGAC-CAGAGACTTCTCTGGTGTAGAC-TTTCCAAAGTAGGAGTTTCCAGCCCCCAACCCTTGGCA-GGGGCATCTC-AGT--------------GGAGATGACTACCTCCACCCCAGGCCCTAACGCATCCTCCTTCTAGAGTCTCAGAGCCTCTGTGTGGCCATGTCAGCAGCCAC----CCAGGTTAAGGATCACCCTTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47109194 561 +  51301725 CCGCGCTGCTGGTACTCCATGGGAGTAGGAAGCTTCCCAGACCCG------GGTTCCTGTACT-GCG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTTGCCTCCCCCAGGGATAAGGTTCTTGCCATCCTTGGTATTGGTATCG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTGCGTGTGTCCCCACCGTAAGGCTGAGGATCCCTCTCGGATGCAGGTGCCCCCGGCTAACGCTTCCAAAACCCCGTCTTGATTTTTCACTGTATGGGGTAAGGCATAGTTGCCTG-GCTGTGTGGATGTAAGATACCTGAGTCTCAAGCGGGAGACTC-CACTGTGGACCCCGTCCCTGGGAC-CGGAGACTTCTCTGGTGTAGAC-TTTCCAAAGTAGGAGTTTCCAGCCCCCAACCCTTGGCA-GGGGCATCTC-AGT--------------GGAGATGACTACCTCCACCCCAGGCCCTAACGCATCCTCCTTCTAAAGTCTCAGAGCCTCTGTGTGGCCATGTCAGCAGCCAC----CCAGGTTAAGGATCACCCTTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46816370 561 +  50890351 CCCCGCTGCTGGTACTCCATGGGAGTAGGAAGCTTCCTAGACCCG------GGTTCCTGTACT-GTG-AGGT-GGGGGCTCTTCCCTCTGGGGCTGTGCCTTCT-CTCCAGGGTAAGGACCCTTTCTTGGTGTTGCCTCCCCCAGGGATAAGGTTCTTGCCATCCTTGGTATTGGTATGG-CTGCTCTTCTGGATTTGAGGTGTCCACGCCTCTGTGTATGTCCCCACCATAAGGCTGAGGATCCCTCTCGGATGCAGGTGCCCCCGGCTAATGCTTCCAAAACCCCGTCTTGATTTTTCACTGTATGGGGTAAGGCATAGTTGCATG-GCTGTGTGGATGTAAGGTACCTGAGTCTCAAGCGGGAGACTC-CACTGTGGACCCCGTCCCTGGGAC-CAGAGACTTCTCTGCTGTAGAC-TTTCCAAAGTAGGAGTTTCCAGCCCCCAACCCTTGGCA-AGGGCATCTC-AGT--------------GGAGATGACTACCTCCACCCCAGGCCCTAACACATCCTCCTTCTAGAGTCTCAGAGCCTCTGTGTGGCCATGTCAGCAGCCAC----CGGGCTTAAGGATCACCCTTCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45391797 556 +  49145316 CCCCCGTGCTGGTACCCCATGGGAGTAGGAAGCTTCCTCCACCCGGGTTCTGGTTCTTATACT-GCG-AGGTGGGGGGCGCTTCCCTCTAGGGCTGTACCTTCT-CTCCAGGGTGAGAACCCTTTCTTGCTGTTGCCTGCCCCAGGAAGAAGGTTCTTGCTATCCTTGGTATTGGTACAG-CTGCTCTCTTGGATTTGAAATGTCCACGCCTGTGTGTGTGTCCCCACCATAAGGCTGAGGACTCCTCTTGGATGCAGGTGCCCCCAGCTAATGCTTCT--AACCCCCTCTTGATTTCTCACTGTATGGGGTGAGGTAGAGGTTCCTG-GCTGTGT-GATGTCAG-TGCCTGAGCCTCAGTTGGGAGACTC-CACTATAGTCCCCGTCCCTGGGAC-C--AGACTCCTC----GTGTAC-CTTTCAAGGTGGGGGTTTCCAGCTCCCCACTCTTGGCA-TGTGCATCTC-AGT--------------GGAGATGACAGCCTCCACCCCAGGACCTAACATATCCTCCTTCCAGAGTCTCAGGGCCTC--TGTGGCCACATCAGCAGCCAC----CCGGGTTAAGGATCACCCTTCA
i calJac3.chr22             C 0 I 723
s mm10.chr7                   3646731 505 + 145441459 CCCA---ACTGGCACCCTGTAGGACTGCTAGCTCTCCTCA--CCG------GAGTCTTCTGCT-GTGTAAGG-GGTAGCCTTTCTCCCTGCAGTTGTGTTGTCT-TTGTCGGGTAGG----------TGTTGTCACCTGCC----AGGTAAAGTCCCTGCCTTCTTTGCTATTGGCATCATCCCCTTTCTTGCGTTTGAGATGGCCACACC---ACCTATGTACCCAGTGTGAGGCT-AGGAT-ACTCTTGGGTGTGGGTGCCCCTGGCTAGTGTGACT---CCTCCTTTGTGGTTTTTCTGTG--------AAGTTATGGTTTCTTGTTCTGTGT-------------CTGAGACCTGGGTGAGAGA--C-CACTGTGGTCACTTTGCTTGGGAC-TAAAGA--GCATAAGGGGTGAC-TTTTCAAGGTGTCAGTTT----CTCCTTACCTTGGTTTTTGGGCCTCTCTAGG--------------GGAAACAGTTACTTCTA-AGCAGGGTCTACTTTATTTACC--------TCAGAGAATCTTCCTGTGGCAGTGCCAGCATCCTCTCCACTAGGTTCAAGTTCCACTTTGA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19609040 484 - 122678785 CCCAGGTACCGGGGACCCCTGGGAGCCTGAGGCCTCCTAGGGCTGA-----GGCTCCCCTACCAATG-AGAC-ATGTGCACTTTGCT-GGGGGGTGTGCTTTCTCCTCCAGGGCAAGGAAACTTTCTCGGTGTTGCTTCCCCCAGGCAGCGGGTTCCTGCCCCGGTGGGCCCTGGCCCGT-GT-------TAGGTGT-AGGTGCACAGGGCAGCGCTTCTGCCCCTTCCTGCATGCT----------CTCAGGTGTGGCT--------CTAAGGCTTCCA-----CCCTCTCAG--------------------------------CG-GCTG------------------------------GGAGACCCTCGCCGTTG--TCAGTCTGCGAAGCACGGAGTTTCCTCTGCTGTAGTCTTTTCCCCGGGTGGGGTTCCCAGGCCCCCATCCTTGGTG-TCAGCCTCCC-TGTGTGTGTGTGTGTGGGGGGGTGACTACCTGCACCCTAGGCTCTA-CATGTCCCTCCTCCAGGGTCTCAGGAGCATTGTGTGGCTCCGTCAGCAGCCTC----CTGGGCTAAGGATTGCTCTCCA
i canFam3.chr1              I 263 C 0

a score=7625.000000
s hg38.chr19_GL949751v2_alt    114802 3 +   1002683 ACA
s panTro4.chr19              59048785 3 +  63644993 ACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55925045 3 +  60714840 ACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102690727 3 - 106955855 ACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59978767 3 +  64156825 ACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55003481 3 +  59248254 ACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47109755 3 +  51301725 ACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46816931 3 +  50890351 ACA
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3647236 3 + 145441459 GTG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19609524 3 - 122678785 GCG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45392353 723 +  49145316 I

a score=2016699.000000
s hg38.chr19_GL949751v2_alt    114805 688 +   1002683 TCACTTCTCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGTGCCTCATGA-CAAAGACCACTCTGTGGGCACATGACGGCCCC------CAAGGTTAAGGACCACCCGGTGTTAGTTTCCCAGGGCTGA-CCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATCATCTTCCCTGAGATGAAGTCTGGGGGGCTCTTCTTTACTG--GTTTTGGCTCT-GATTTTAGCG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCT-----CACCTCCCCCCGCCCC-GCCACCCGCCTTGTGGGTCCCTTCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAGTCTCCTCCTGGGCCGAGGTTCCCAGATTCCTCAGTGCTCTTG-----------GAGAGCCTTTGCTGCTGGAGCACAGGTTCTTC-ACG--------------CCTGAGA------------GTGGACCTGCGATCACCACC-TTCCTTGGAGGATCT-----------TGGTGGATGCCCCCCTGACTACAGCAAATGGGGCTCTTTCTTCTCTGGCGGCGTCTCTGCTTCGAGACTCAGGCTCCAGCTTCCCTTCTCTCTGGTCCTTTGCT----GGGGGGACCAGAG--GTACAGATAC-----CCTCATGATATAAGG---------ATTTTCTTA-----GC-GGGGAAGGTGTTGTCTCTACTGTGGC----------TAAGGCTCCAGCCTCTCTAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
s panTro4.chr19              59048788 690 +  63644993 TCACTTCTCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGTGCCTCATGA-CAAAGACCACTCTGTGGGCACATGACGGCCCC------CAAGGTTAAGGACCACCCGGTGTTAGTTTCCCAGGGCTGA-CCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATCATCTTCCTTGAGATGAAGTCTGGGGGGCTCTTCTTTACTG--GTTTTGGCTCT-GATTTTAGCG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCT-----CACCTCCCCCCCCCCCCGCCACCCGCCTTGTGGGTCCCTTCCCCTGTGGGGATGTGTGTTCCTCTTGGGTAAGTCTCCTCCTGGGCCGAGGTTCCCAGATTCCTCAGTGCTCTTG-----------GAGAGCCTTTGCTGCTGGAGCACAGGTTCTTC-ACG--------------CCTGAGA------------GTGGACCTGCGATCACCACC-TTCCTTGGAGGATCT-----------TGGTGGATGCCCCCCTGACTACAGCAAATGGGGCTCTTTCTTCTCTGGCGGCGTCTCTGCTTCGAGACTCAGGCTCCAGCTTCCTTTCTCTCTGGTCCTTTGCT----GGGGGGACCAGAG--GTACAGATAC-----CCTCATGATATAGGG---------ATTTTCTTA-----GC-GGGGAAGGTGTTGTCTCTACTGTGGC----------TAAGGCTCCAGCCTCTCTAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55925048 677 +  60714840 TCACTTCCCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGTG---TATGA-CAAAGACCACTCTGTGGGCACATGACGGCCCC------CAAGGTTAAGGACCACCCGGTGTTAGTTTCCCAGGGCTGAGCCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATTATCTTCCCTGAGATGAAGTTTGGAGAGCTCTTCTTTACTG--GTTTTGGCTCT-GATTTTAGCG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCT-----CA---CCCCACGCCCC-------CGCCTTGTGGGTCCCTTCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAGTCTCCTCCTGGGCTGAGGTTCCCAGATTCCTCAGTGCTCTTG-----------GAGAGCCTTTGCTGCTGGAGCACAGGTTCTTC-ACG--------------CCTGAGA------------GTGGACCTGCGATCACCGCC-TTCCTTGGAGGATCT-----------TGGTGGATGCCCCCCTGACTACAGCAGATGGGGCTCTTTCTTCTCTGGCGGCGTCTCTGCTTTGAGACTCAAGCTCCAGCTTCCCTTCTCTCTGGTTCTTTGCT----GGGGGGACCAGAG--GTACAGATAC-----CCTCATGATATAGGG---------ATTTTCTTA-----GC-GAGGAAGGTGTTCTCTCTGCTGTGGC----------TAAGGCTCCAGCCTCTCTAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102690730 677 - 106955855 TCACTTCCCAGAGCTCCTTGCTGCCGAGGCGGAAGCTCTCCCAGATCAAAGGCGTCTCATGA-CAAAGACCACTCTGTGGGCACATGACGGCGCC------CAAGGTTAAGGACCACCCGGTGTTAGTTTCCCAGGGCTGAGCCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATCATCTTCCCTGAGATGGAGTGTGGGGGGCTCTTCCTTACTG--GTTTTGGCCCT-GATTTTAGCG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCT-----CA---CCCCACCCCCC--------GCCTTGTGGGTCCCTTCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAAT---CTCCTGGGCCGAGGTTCCCAGATTCCTCAGTGCTCTTG-----------GAGAGCCTTTGTTGCTGGAGCACAGGTTCTTC-ACA--------------CCTGAGA------------GTGGACCTGTGATCACCACC-TTCCTTGGAAGATCT-----------TGGTGGATGCCCCCCTGACTACAGCAAATGGGGCTCTTTCTTCTCTGGTGGCGTCTCTGCTTCGAGACTCAAGCTCCAGTTTCCCTTCTGTCTGGTCCTTTGCT----GGGGGGACCAGAG--GTACAGACAC-----CCTCATGATATAGGG---------ATTTTCTTA-----GCGGGGGAAGGTGTTGTCTCTGCTGTGGC----------TAAGGCCCTAGCCTCTCTAGGGGAGAAGTACCCTGGGCCTCTGGCACTTGCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59978770 674 +  64156825 TCAGTTCCCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGCGCCTCATGA-CAAAGACCACTGTGTGGGCACATGACAGCCCC------CAAGGTTAAGGACCGCCCAGTGTTAGTTCCCCAGGACTAAGCCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATCATCTTCCCTGAGGTGAAGTTTGGGGGGTTCTTCTTTACTG--GTTTTGGCCCT-CATGTAGGTG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCT-----CA---CCCCACCCCAC--------CCCTTGTGGGTCCCTGCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAGT---CTCCTGGGCCAAGGCT-CCAGACTCCTCAGTGCTCTCG-----------GAGAGCCTTTGCTGCTGCAGCGCAGGTTCTTC-ACG--------------CCTGGGA------------GCGGACCTGCGATCACCGCC-TTCCTTGGAGGATCT-----------TGGTGGACGCCCCGCGGACTGCAGCAAATGGGGCTCTTTCTTCTCTGGCAGCGTCTCAGCTTCGAGACTCAAGCTCCAGCTTCCCTTCTCTCTGGTCCTTTGCC----AGGGGGACCAGAG--GTACAGACAC-----CCTCATGATATAGGA---------ATTTTCTT------GG-GGGGAAGGTGTTGTCTCCGCTGTGAC----------TAAGGCTCCAGCCTCTATAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55003484 675 +  59248254 TCAGTTCCCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGCGCCTCATGA-CAAAGACCACTGTGTGGGCACATGACAGCCCC------CAAGGTTAAGGACCGCCCAGTGTTAGTTCCCCAGGACTAAGCCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATCATCTTCCCTGAGGTGAAGTTTGGGGGGTTCTTCTTTACTG--GTTTTGGCCCT-CATGTAGGTG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCT-----CA---CCCCACCCCAC--------CCCTTGTGGGTCCCTGCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAGT---CTCCTGGGCCAAGGCTCCCAGATTCCTCAGTGCTCTCG-----------GAGAGCCTTTGCTGCTGGAGCACAGGTTCTTC-ACG--------------CCTGGGA------------GTGGACCTGCGATCACCACC-TTCCTTGGAGGATCT-----------TGGTGGACGCCCCGCGGACTGCAGCAAATGGGGCTCTTTCTTCTCTGGCAGCGTCTCAGCTTCGAGACTCAAGCTCCAGCTTCCCTTCTCTCTGGTCCTTTGCC----AGGGGGACCAGAG--GTACAGACAC-----CCTCATGATATAGGA---------ATTTTCTT------GG-GGGGAAGGTGTTGTCTCCGCTGTGAC----------TAAGGCTCCAGCCTCTATAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47109758 676 +  51301725 TCAGTTCCCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGCGCCTCATGA-CAAAGACCACTGTGTGGGCACATGACAGCCCC------CAAGGTTAAGGACCGCCCAGTGTTAGTTCCCCAGGACTAagcctcctgc-----ccctccctcctcgAGT------------CTTTGTGTGGTGGTATCATCTTCCCTGAGGTGAAGTTTGGGGGGTTCTTCTTTACTG--GTTTTGGCCCT-CATGTAGGCG--TGTTGGCTCCTGTGAGGCTGGTGTCCtgct-----ca---ccccaccccac--------cccttgtGGGTCCCTGCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAGT---CTCCTGGGCCAAGGCTCCCAGATTCCTCAGTGCTCTTG-----------GAGAGCCTTTGCTGCTGGAGCACAGGTTCTTC-ACG--------------CCTGGGA------------GTGGACCTGCGATCACCACC-TTCCTTGGAGGATCT-----------TGGTGGATGCCCCGCGGACTACAGCAAATGGGGCTCTTTCTTCTCTGGCAGTGTCTCTGCTTCGAGACTCAAGCTCCAGCTTCCCTTCTTTCTGGTCCTTTGCC----GGGGGGACCAGAG--GTACAGACAC-----CCTCATGATATAGGA---------ATTTTCTTA-----GG-GGGGAAGGTGTTGTCTCCGCTGTGAC----------TAAGGCTCCAGCCTCTCTAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46816934 692 +  50890351 TCAGTTCCCAGAGCTCCTTGCTGCAGAGGCGGAAGCTCTCCCAGATCAAAGGCTTCTCATGA-CAAAGACCACTGTGTGGGCACATGACAGCCCC------CAAGGTTAAGGACCGCCCAGTGTTAGTTCCCCAGGACTAAGCCTCCTGC-----CCCTCCCTCCTCGAGT------------CTTTGTGTGGTGGTATCATCTTCCCTGAGGTGAAGTTTGGGGGGTTCTTCTTTACTG--GTTTTGGCCCT-CATTTAGGCG--TGTTGGCTCCTGTGAGGCTGGTGTCCTGCTCACCCCA---CCCCACCCCAC--------CCCTTGTGGGTCCCTGCCC-TGTGGGGATGTGTGTTCCTCTTGGGTAAGT---CTCCTGGGCCAAGGGTCCCAGATTCCTCAGTGCTCTTGAGAGAGCCTCAGAGAGCCTTTGCTGCCGGAGCACAGGTTCTTC-ACA--------------CCTGGGA------------GTGGACCTGCAATCACCACC-TTCCTTGGAGGATCT-----------TGGTGGACGCCCTGCTGACCACAGCAAATGGGGCTCTTTCTTCTCTGGCAGCGTCTCTGCTTCGAGACTCAAGCTCCAGCTTCCCTTCTCTCTGGTCCTTTGCC----GGGGGGACCAGAG--GTACAGACAC-----CCTCATGATATAGGA---------ATTTTCTTA-----GG-GGGGAAGGTGTTGTCTCCGCTGTGAC----------TAAGGCTCCAGCCTCTCTAGGGGACAAGTACCCTGGGCCTCTGGCACTTGCCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45393076 672 +  49145316 TCACTTCCCGGAGCTCCTTGCTGCCGAGGCGGAAGCTCTTCCAGATCAAAGGCGCCTCATGA-C--AGACCACTCTGTGGGCACAGGAT-GTCTC------CAAGATTAAGGACCGTCCGGTGTTAGCTCCCCAGGACAGAGCCTCCTGCCCCCTCCCTCCTTCCTCAATT------------GTTTGTGTGGTGGTATCATCTTCCCTAAAGTGAAGTTTGGGGG-----TCTTTACTG--GTTTTGACCCC-CGTTTTAGCA--TGTTGGCTCCTGTGGGGCTGGTGTCCTCCT-----CA---CCCCACCCCTT-------AGCC---TGGGTCCCTGCCC-TGTGGGAATGAGTGTTCCTCTTGGGTAAGTGTCCTCCTGGGCCAGGGTTTGCAGACTCCTCAGTGCTACTG-----------GAGAGCCCTTGCCGCCAGAGCACAAGCTCCTCTGTG--------------CCCAAGA------------GTGGACCCACAATTGTTAGC-TTCCTTGGAGGATCT-----------TGGTGGATGCCGCCC-GACTACAGCAAATGGGGCTCTTTCTTCTCTGGTGGCATCTCCGCTTCGAGACTGAAGCTCCAGCTCCCCTTCTCTCTGGTCCTTTTTA----GGGGGAACCTGAG--GTACAGACAT-----TCTCAGGCTACAGAG---------ATTTTCTTA-----GT-GGGGAAGGTGTTGTCTCCAC--TGGC----------TAAGGCTCCAGCCTGTCTAGGGGACAAGTACTCTGGGCCTTGGGCACTTGCTC
i calJac3.chr22             I 723 C 0
s mm10.chr7                   3647239 586 + 145441459 CTGCTTGCCACCATCCCTGGCTTCA---GTGTGAGCCCTCTTAGCCC-----TGTGCTATGCTCCAAGATGCTTCTGTGGTCACTTAGCAGTACCAGGCTTCAAAATTAAGG--------------------------------TTGTAC-----CCCT---TCATCAGGT------------CTCTGAATGATGGC-TTGGCACCTGTGGTGAGAAGTTCTATAGATTGTTCTGT------------------------------TGTTGGCTCC-----------TATTTTGAG-----TA-----------CTT--------GATTTGAGGATTTGCTACA-GCTGTGGACAGATGATCCTAATGATTTTGC---TTCCACAGACG-----CCCAGCTTCCTCCATGCTGTTT-----------GAGACCCTTCACCATCTATACATGTATTCTGT-GTGAAGGTGTTTGCTTACCTCACA------------AGGGCCCTGTAGTGATGGCC-TCCTCGAGCAGGACC-----------TGGGAAGTG----------------GGATGGG---CAGTCTTCTGTGGTGGCACCTCTACTTTGAGGCTCTAGCACTTG-----------------CCTCTGTT----TGCAGAACTTGTGCAGTCTATGCACCTTCTCCTTGTGAAGTGGGGCTTGGTTTTGTTTTGTTGTATGTGG-AGAGAAGGTATTGCCTCCACTCTGGC----------TGTGGCTCCAGCCTC--TAAAACACAAA-GTCCTGGCTCTGTGGGCCTTGTTC
i mm10.chr7                 C 0 I 756
s canFam3.chr1               19609527 637 - 122678785 TCACTTCCCAGTGT--------------GCCAAAGCT--------------------------CCTGGTCCACTGTG----------ACAGCCCC------CGGGGTTAGGGA------------------------CTAGGCTTTCTGC-----CCT--CCTCCCCGGGTCCCCGGCAAGGCCTCTCTGTGACTGTGCCCTTTCCCCGGAGCTGAGGTTTTGGGGGTTGTCCATGATTGTCATTTTGGTCCTGCATTGAAATGGCTGTTGCCTCCCATGGGTCTGGCGCACTACT-----TA---CCCCAACCCCA-----------GAATGGGCTCCTG----GGGAGGGATGAG------ACTTGGTGAAGC---CTCTTGGGCCAGGGCTTCTTGTTTCCTCAGTTATGTTT-----------GAGACACTTTGCTATGAGCGTGGGAGCTCTTTGGTG--------------CCTGAGATCCCCTGTCTCGGTGGGCCTACTGTGGTTACCTTTTCCTTGAGGATCCCCCAGGAGCCATGGGGGTTCCCAGCTCTATTA----GAATGGGGCTTTTCCGTT----GTGGCACCTCCACTTCAAGGCCCAGGCTCCAGTTCTCTTTATCTCTGGTCCCTTGTTTCAGGGTGGGGGAGGGA--GAGCATCTTT-----CTTCAAAGGCAGGGG---------CTGTTGCTCCC---AC-AGCAAAGGC-TCCTGTCCACTGTAGCACCCAGCCCAGAAGGTGCAAGTACCCAGAAGGTGCAAGTACCCTGGGCC-CTGGTGCCTCCCA
i canFam3.chr1              C 0 C 0

a score=257185.000000
s hg38.chr19_GL949751v2_alt    115493 92 +   1002683 CTTCTCTGTGGAGGAGCTGCCTCCTCACTGGGTCTCAGCTGTAGCCGACTTCGATGTCA----CACTGTTCTGTCTGAAACATCACCTCCCTGGGT
s panTro4.chr19              59049478 92 +  63644993 CTTCTCTGTGGAGGAGCTGCCTCCTCGCTGGGTCTCAGCTGTAGCCAACTTCGATGTCA----CACTGTTCTGTCTGAAACATCACCTCCCTGGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55925725 92 +  60714840 CTTCTCTGTGGAGGAGCTGCCTCCTCGCTGGGTCTCAGCTGTAGTCAACTTCGATGTCA----CGCTGTTCTGTCTGAAACATCACCTCCCTGGGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102691407 96 - 106955855 CTTCTCTGTGGAGGAGCTGCCTCCTCTCTGGGTCTCAGCTGTAGTCGACTTCGATGTCACGCTCGCTGTTCTGTCTGAAACATCACCTCCCTGGGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59979444 92 +  64156825 CTTCTCTGTGGAGGAGCTGCCTCCTCGCTGGGTCTCAGCTGTAGCTGACTTCGATGTCA----CGCTGTTCTGTCTGAAACATCACCTCCCTGGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55004159 92 +  59248254 CTTCTCTGTGGAGGAGCTGCCTCCTCGCTGGGTCTCAGCTGTAGCTGACTTCGATGTCA----CGCTGTTCTGTCTGAAACATCACCTCCCTGGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47110434 92 +  51301725 CTTCTCTGTGGAGGAGCTGCCTCCTCGCTGGGTCTCAGCTGTAGCTGACTTCGATGTCA----CGCTGTTCTGTCTGAAACATCACCTCCCTGGGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46817626 92 +  50890351 CTTCTCTGTGGAGGAGCTGCCTCCTCGCTGGGTCTCAGCTGTAGCCGACTTCGATGTCA----TGCTCTTCTGTCTGAAACATCACCTCCCTGGGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45393748 71 +  49145316 CTTCTCTGTGGAGGAGCTGCCTCCCC-------------------TGACTTTGATGTCA----CATTGTTCTGTCTGAAGCATCGCCT--CTGGGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19610164 47 - 122678785 -----CAGATCCAGGGTTGTCTTCCC--TGGGCC-----------------------CA----AGATGTCCTCTC---------------CTGGGT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3647825 756 + 145441459 I

a score=2171598.000000
s hg38.chr19_GL949751v2_alt    115585 726 +   1002683 TAGCGCTCTTGTTCCCCTC---------CTTCTGGCTTGTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGTG-G----GTATTCTTCCTCTGCACTAGGATACCAGTCCTTTCCGTGTGGAGACACAGGGAGGGCGTCACCTGCCTAAGGTGTTGATTGCCTTGTTTAGGGGTGTAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCATGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGTG---TAAACTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCCCTGCACACCTGAGCTCTGGTGTCCAGGCCCT---TGCCTTGTGTGAGCTCCCTGGGTCAAAGGGGCTTTCCCCTCCTCAGCCTGAATCCCCACTGTGGCACCTTCTCCTGGGTCCTTTTGTTGGTTGCTTTGCCTTCTTAGAGA-----------------TTCCCCA-GGTAGGGCGTGATAGCTGA-------CCTGGGCGGGGGCTGCTGC-------GGCTTTCTTTAGGTTGGGCCTTTTACTGAGGAGATTTAAATTCCCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTATCACCCAGAATGGGTCCCTGCGG----TGTTGG-----GAAAATTCTCCCTGG---GGGTAAGGTACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCATATcc----------gtcc-ca---tatggttgctgctagt
s panTro4.chr19              59049570 726 +  63644993 TAGGGCTCTTGTTCCCCTC---------CTCCTGGCTTGTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGCG-G----GTATTCTTCCTCTGCACTAGGATACCAGTCCTTTCCGTGTGGAGACACAGGGAGGGCGTCACCTGCCTAAGGTGTTGATTGCCTTGTTTAGGGGTGTAGACCATGAGGCCTCTTCTCTCTCG-GGGCTGGGGCACCTGCCCATGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGTG---TAAGCTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCCCTGCACACCTGAGCTCTGGTGTCCAGGCCCT---TGCCTTGTGTGAGCTCCCTGGGTCAAAGGGGCTTTCCCCTCCTCAGCCCGAATCCCCACTGTGGCACCTTCTCCTGGGTCCTTTTGTTGGTTGCTTTGCCTTCTTAGAGA-----------------TTCCCCA-GGTAGGGCGTGATAGCTGA-------CCTGGGCGGGGACTGCTGC-------GGCTTTCTTTAGGTTGGGCCTTTTACTGAGGAGATTTAAATTCCCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTATCACCCAGAATGGGTCCCTGCGG----TGTTGG-----GAGAATTCTCCCTGG---GGGTAAGGTACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCATATcc----------gtcc-ca---tatggttgctgctagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55925817 726 +  60714840 TAGGGCTCTTGTTCCCCTC---------CACCTGGCTTCTGACCCCTCCAGGACTTCGTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGGG-G----GTATTCTTCCTCTGCACTGGGATACCAGTCCTTTCCATGTGGAGACACAGGGAGGGCGTCACCTCCCTAAGGTGTTGATTGCCTTGTTTAGGGGTGTAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCATGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGTG---TAAGCTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCCCTGCACACCTCAGCGCTGGTGTCCAGTCCCT---TGCCTTGTGTGAGTTCCCTGGGTCAAAGGGGCTTGCCCCTCCTCAGCCTGAATCCCCATCGTGGCGCCTTCTCCTGGGTCCTTTTGTTGGTTGCTTTGCCTTCTTGGAGG-----------------TTCCCCA-GGTAGGGCGTGTTAGCTGA-------CCTGGGCGGGGGCTGCTGC-------CGCTTTCTTTAGGTTGGGGCTTTTACCGAGGAGACTTAAGTTCTCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTACCACCCAGAATGGGTCCCTGCGG----TGTTGG-----GAAAATTCTCCCTGG---GGGTAAGGTACCAGCCCTGT---CCTTT----ATGGGCTGCTTGTTCTAAAGCACACcc----------gtcc-ca---tatggttgctgctagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102691503 727 - 106955855 TAGGGCTCTTGTTCCCCTC---------CACCTGCCTGCTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGGG-G----GTGTTCTTCCTCTGCACTAGGGTACCAGTCCTTTCCGTGTGGAGACACAGGGAGGGCATCACCTCCCTAAGGTGTTGATTGCCTTGTTGAGGGGTGTAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCGTGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGTG---TAAGCTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTCAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCCCTGCACACGTCAGCGTTGGTGTCCAGGCCCT---TGCCTTGTATACGCTCCCTGGGTCAAAGGGACTTGCCCCTCCTCAGTCTGAATCCCCTCCATGGCACTTTCTCCTGGGTCCTTTTGTTGGTTGCTTTGCCTTCTTGGAGA-----------------TTCCCCA-GGTACGGCATGTTAGCTGA------CCCTGGGCGGGGGCTGCTGC-------CGTTTTCTTTAGGTTGGGCTTTTTACTGAGGAGACTGAAGTTCCCACAAGTGTAAG--GTAGCA-------CCCCTACCTATTACCACCCAGAATGGGTCCCCCCGG----GGTTGG-----GAAAATTCTCCCTGG---GGGTAAGGTACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCACACcc----------gtcc-ca---tatggttgctgctagt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59979536 731 +  64156825 TAGGGCTCTTGTTCCCCTC---------CAGCTGGCTGCTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGGG-G----GTGTTCTTCCTCTGTGCTAGGGCACCAGTCCTTTCCGTGTGGAGACGCAGGGAGGGTGTCACCTCCCTAAGGTGTCGATTGCCTTGTTTAGGGGTGAAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCATGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGCG---TACGCTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCTCTGCACACCTCAGGGTTGGTGTCCAGGCCCT---TGCCTTGTATAAGCTCCCTGGATCAAAGGGACTTGCCCCTCCTCAGTCAGAATCCCCACTGCGGCACTTTCTCCTGGGTCCTTTTGTT-GTTGCTTTGCCTTCCTGGAGA-----------------TTCCCCA-GGTGTGGCATGTTAGCTGACTCTGACTCTGAGCGGGGG-TGCTGC-------CTTTTGCTTTAGGTTGGGCCTTTTACTGAGGAGATTTAAGTCCCCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTACCACCCAGAATGGGTCCCGGCAG----TGTTGG-----GAAAGTTCTCTCTGG---GGTTAGGGTACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCACACcc----------gtcc-ta---tatggttgctgctagt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55004251 731 +  59248254 TAGGGCTCTTGTTCCCCTC---------CAGCTGGCTGCTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGGG-G----GTGTTCTTCCTCTGTGCTAGGGCACCAGTCCTTTCCGTGTGGAGACGCAGGGAGGGTGTCACCTCCCTAAGGTGTCGATTGCCTTGTTTAGGGGTGAAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCATGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGCG---TACGCTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCTCTGCACACCTCAGGGTTGGTGTCCAGGCCCT---TGCCTTGTATAAGCTCCCTGGATCAAAGGGACTTGCCCCTCCTCAGTCAGAATCCCCACTGCGGCACTTTCTCCTGGGTCCTTTTGTT-GTTGCTTTGCCTTCCTGGAGA-----------------TTCCCCA-GGTGTGGCATGTTAGCTGACTCTGACTCTGAGTGGGGG-TGCTGC-------CTTTTGCTTTAGGTTGGGCTTTTTACTGAGGAGATTTAAGTCCCCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTACCACCCAGAATGGGTCCCGGCAG----TGTTGG-----GAAAGTTCTCTCTGG---GGTTAGGGTACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCACACcc----------gtcc-ta---tatggttgctgctagt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47110526 731 +  51301725 TAGGGCTCTTGTTCCCCTC---------CAGCTGGCTGCTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACAGT--GTGG---------TCTCCTCTCTGGG-A----GTATTCTTCCTCTGTGCTAGGGCACCAGTCCTTTCTGTGTGGAGACGCAGGGAGGGTGTCACCTCCCTAAGGTGTTGATTGCCTTGTTTAGGGGTGAAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCAGGACCCTCTGTTGGGTTCTTGGGATGGAAAGAGGGAGCG---TAAGCTCTCGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTGTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCCCTGCACACCTCAGGGTTGGTGTCCAGGCCCT---TGCCTTGTATAAGCTCCCTGGATCAAAGGGACTTGCCCCTCCTCAGTCAGAATCCCCACTGCGGCACTTTCTCCTGGGTCCTTTTGTT-GTTGCTTTGCCTTCCTGGAGA-----------------TTCCCCA-GGTGTGGCATGTTAGCTGACTCTGACTCTGAGTGGGGG-TGCTGC-------CTTTTGCTTTAGGTTGGGCCTTTTACTGAGGAGATTTAAGTCCCCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTACCACCCAGAATGGGTCCCGACAG----TGTTGG-----GAAAGTTCTCTCTGG---GGTTAGGGGACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCACACCC----------GTCC-TA---TATGGTTGCTGCTAGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46817718 730 +  50890351 TAGGGCTCTTGTTCCCCTC---------CAGCTGACTGCTGACCCCTCCAGGACTTCCTTCTCTTGCTGCCACCGT--GTGG---------TCTCCTCTCTGGG------GTATTCTTCCTCTGTACTAGGGCACCAGTCCTTTCTGTGTGGAGACGCAGGGAGGGTGTCACCTCCCTAAGGTGTTGATTGCCTTGTTTAGGGGTGAAGACCATGAGACCTCTTCTCTCTCT-GGGCTGGAGCACCTGCCCATGACCCTCTGTTGGGTTCCTGGGATGGAAAGTGGGAGCG---TAAGCTCTTGTTTCACATTCTTGTTCCCCCTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGGTGTTGGACTTTGGTGAGGATCCCTGCACACCTCAGGGTTGGTGTCCAGGCCCT---TGCCTTGTATAAGCTCCCTGGATCAAAGGGACTTGCCCCTCCTCAGTCAGAATCCCCACTGCGGCACTTTCTCCTGGGTCCTTTTGTT-GTTGCTTTGCCTTCCTGGAGA-----------------TTCCCCA-GGTGTGGCATGTTAGCTGACTCTGACTCTGAGCGGGGG-TGCTGC-------CTTTTGCTTTAGGTTGGGCCTTTTACTGAGGAGATTTAAGTCCCCTCAAGTGTAAG--GTAGCA-------CCCCTACCTATTACCACCCAGAATGGGTCCCAGCAG----TGTTGG-----GAAAGTTCTCTCTGG---GGTTGGGGTACCAGCCCTGT---CCTTT----ATGGGCTTCTTGTTCTAAAGCACACcc----------gtcc-ta---tatggttgctgctagt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45393819 727 +  49145316 TAGGCCTCTTGTTCCCCTC---------CAGCTGGCTGCTGACCTGT-CAAGACTTCCTTCTCCTGCTGCCACGGC--ATGGGGGTTGTTCTGCCCTCTCTGGGGG----GTATTCTTTCTCTCCACTAGGGTACCAGTCTTTTCCATGGGGACACGCAGGGAGGGTGTCACCTCCCTAAGATGTTGATAGCCTTGTTTGGGGGTGTAGCCCATGAGACCTCTTCTTTCTCGAGGGTGGGAGCGCCTGCCCATGCCCCTCTGTTGAGTTCTTGGGATGGAAAGAGGGGGTG---TAAGCTCTGGTTCCACATTCTTGTT-CCCTTA-TGCAGTAAGAGGCTTTTCTGTGTTG--GGCTGTTGGACTTTGGTGAGGATCCTGGCAAACCTCAGGGTTGGTGTCCAGGCCCT---GGCCTCAT---AGCTCCCTGGATCACAGGGACTTGCCCCTCCTCAGTCTGAGTCCCCTCTGGGGCACTTTCTCCTGGGTCTTTCTGTTGGTTGCGTTGCCTT------AG-----------------CTTCCCT-TGTATGTTATGTTGGCTGA------CTCTAGGCGGGCGGTGCTGC-------TGTTTTCTTTAGGTGGGGCCTTTTACTGAGGAGATTTAAGTTCCCTGAAGTTTAAG--TTAGCA-------CTCCTACCTGCTACCA-CCAGAATAGGTCCCTGCGG----CGTTGG-----AGAACCCTCAGCAGGGCTGGTTACGGTGCCAGGCCTGT---CCTTT----ATGGGTCTCTT-TTCTAAAGCACCCTT----------GTCC--A---TAGGGTTGCTGCTAGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3648581 711 + 145441459 -tggcccTTTGTTGCCCCTGTTTTTGGGTGCCTTGCTTCTGGTCCCTTTAGAACTTCTGTCATttgttgttgttgttgttgt---------tgttgttgctgtG-GCTTATTGCTCTTGCTGCAAGCCTGTGTCACCGCTTCCTCTGTGT---------------------------TGCAGTCCCAGCCACTTTGT---GGAGCGTGG---ATAAGGCCTCACCTTACTTA-AGGTGGCAGTGCCTGCCCAGAACCCTCCTACAGGCTCTTGGGACAAAGTGA-GCAGTGTAATAAGCTCTTGTTTAACATTCTTTCCTTCCCTGCTATAAAAAGAGGCTTCTCTGTGCTGATGGATATTAGA-----GCCAAGACTC----------------TAGAGTCAAGATCCTGAATACCTCCTGCAGGGTCCCTAGATCAGGGGTACTTAGTCTACTTCAG------TCTCCTCTATGGGGCTCTTTGCTGAGTTCTTTTGATGGTTGCTTCATCTTCCTGGAAA-----------------TTGCCTGCTGTATGGTGTGTCAGCTAA------TCCTCTGTTGAGAGTGCTGTGTGCGTGCTCTCTCTTTTTGATAGATC-----CTAAAGATATTTAAGTCCCCAC-AGTTTGAG--GTGCCA-------CCCATAGCTACCTCCCCACAAAGTGGGACCCTACAG----AGTTAATTTTTTAAATCCCTTTTCAG---AG--AAGGCACTAGCCCCAT---CCACTGTAGGTAGGCCTCTTTTTCTGAATCTGCTCCCTAATGCAGTATCC-CATGCTATGATTAGTATAAGT
i mm10.chr7                 I 756 I 329
s canFam3.chr1               19610211 522 - 122678785 GAGGTCTCTTGTTCCCCTG--------GCACCATGCTTCTCACTCCTTCAGGACT------------TGCCACAGT--CTGC---------TCCCCTCTT--GG-G----GTAT----------------------------------------------------CACCTCCCCCCTGAGCTGTGG------------------------CATG---CATCCTCTCCCTCC-GGGCTG---------------------------------------------------------------------------------CCCCTG-GGCAGTAAGAGGCATTCCTGTGTTG--GG-------------------------------------------GTCCTGGCCCT---CTCC-----CAAGCTCCC-AGGCCAAAGGCTCTT---CCATTTCAGTTTGG-TCCTCTCTGTGCAACTGTCTGCTAGGTGCTTCTCTG-GCTGCCT--CCTTTTTGGAGGGATCTTGTGTGGGGATCTGGCCCC-ACTGTGGTGTGTCGGCTGG------CCTGGGGCCGAGGGTGGAGC-------CATCATC--TGGGTTGGCTCTTAT-----GGAGATGTATGCTCCCTCAAGTCTGAGCTGTGACATCCCTCTCCCCCGCTCTTCAGTGTCCAGAATGGGCTCTCGCGGAGGATGCTGG-----TGCAGACAGCCTTGG---GGCCTTGGTCCTTCTCCAGCATACTCTC----AT--GCCCTGTGCTTT----CATACGT----------GTTCTCA---TACGCTAGCCGTTAGC
i canFam3.chr1              C 0 C 0

a score=462741.000000
s hg38.chr19_GL949751v2_alt    116311 157 +   1002683 cacatgtg-gtgattagtaactagttaaaaatgaaaaattcagttcctccattacacttgccacatttcagatgttcagtggccaacagata-tgcgcaaatagagtgtttccagcattgc--aaagttctgttggatagcactgTTTGCCAGATGTTCCC
s panTro4.chr19              59050296 157 +  63644993 cacatgtg-gtgattagtaactagttaaaaatgaaaaattcagtttctccattacacttgccacatttcagatgttcagtggccaacagata-tgcgcaaatagagtgtttccagcattgc--aaagttctgttggatagcactgTTTGCCAGATGTTCCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55926543 157 +  60714840 cacatgtg-gtgattagtaactagttaaaaatgaaaaattcagttcctccattacacttgccacatttcagatgttcagtggccagcagata-tgtgcaaatagagtgtttccagcattgc--aaagttctgttggatagcactgTTTGCCAGATGTTCCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102692230 157 - 106955855 caaatgtg-gtgattagtaactagctaaaaatgaaaaattcagttccttcattacacttgccacatttcagatgttcagtgtccaacagata-tgcgcaaatagagtgtttccagcattgc--aaagttctgttggatagcactgTTTGCCAGATGTTCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59980267 157 +  64156825 cacatgtg-gtgattaataactagttaaaaatgaaaaattcggttcctccattacacttgccatatttcagatgttcagtggccaACAGATA-AGCATAAATAGAGTGTTTCCAGCATTGC--AAAGTTCTGTTGGAGAGCACTGTTTGCCAGATGTTCCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55004982 157 +  59248254 cacatgtg-gtgattaataactagttaaaaatgaaaaattcggttcctccattacacttgccatatttcagatgttcagtggccaacagata-agcataaatagagtgtttccagcattgc--aaagttctgttggagagcactgTTTGCCAGATGTTCCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47111257 157 +  51301725 CACATGTG-GTGATTAATAActagttaaaaatgaaaaattcggTTCCTCCATTACACTTGCCATATTTCAGATGTTCAGTGGCCAACAGATA-AGCATAAATAGAGTGTTTCCAGCATTGC--AAAGTTCTGTTGGAGAGCACTGTTTGCCAGATGTTCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46818448 154 +  50890351 cacatgtg-gtgattaataactagttaaaaatg-aaaattcggttcctccattacacttgccatatttcagatgttcagtggccaacagata-agcataa--agagtgtttccagcattgc--aaagttctgttggagagcactgTTTGCCAGATGTTCCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45394546 155 +  49145316 CACATGCG-GTGATTAGTAACTGGTCAAAGATGAAAGATT---GTTCTCCGTTACACTTGCCACATTTCAGATGCTCAGGGGCTGACAGATAGTGCACATGGACAGTGTTTCCTGCGTTGC--AGAGTGGTGTTGCACAGCGCGGTTGGCCAGATGCTCCC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19610733 134 - 122678785 ----TGTGTGTAATTGAAA------TAAAAATGCAAAGTTCTAGTTTTTCATAGT---------------GGTATTTAGAGAC--ATAGGTAGCATTTATAGGGAGCATTTCTGTCATCGTAGAAAGTGTTGTTGGATAGGGCTGTTGGTGAGGCAGTCCG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3649292 329 + 145441459 I

a score=3495331.000000
s hg38.chr19_GL949751v2_alt    116468 1105 +   1002683 TTCTT---TGTGGGTGAGGACTCTTTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTGTTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCAGGG----------TTCCC-TGCCCTGCACACGTAGAGTGGGAGCGGCCCGTGGATCCCAGGGAACTGTGCTTTTCATTGTAGGCCCCCTCCCTGGAGGGGAAGA----GGGCAATCTCCGCTGGTATCTCAGAAGTCTTCTTCTGAGGCATAAGCCTCTCTTCCCAGGGCTC---------CCCTGGTCTCGCTGTCAGGCCCTAAGGTATGTCTTCCCTTG------GACT-AAAGCTCCTTGGAACTCCCTTTTGACCTCAGTCTTCTCTGGGTTCCAGGTAACTTCCTTTAAAATAAAGACGCTCCTCTCTTGAAGTTTTGGGTTCCTGCCCTGAT-GGTCTATGTCTCCCTGACTCTAAATTACCAATCCACTTGCTATG-GGATTCCTCCATGAGTGCAGATCGGCTCCCTCACAGCTGCGGTACCTTTGCACCCTCTTA--TCTTAGTAAGATTTCTGTCTTCTCCCAGGTCTCTCTTGGGTACTGCCTTCTGCCCCCAAATCTCT--AAGCCTTCTTGGTATTAGCTTCTTTGGGTTAGGAGTGTTATTTCCTTTTGGTTTAAGGATCCTGCTCTGGAATAAATGTCTTGGTGGTTTGAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGCATGAGCGGGTTCAGCTCTTCACAGCTTTCGGCATCTCTGCTCGCCGTCGTTTTCCCCCACCCCCAATCTTTCTTCTCCTACCTACAGCTTacacacacacac-acacacacacacacacacacacacacGCCCTTCTCTGTGAGCTGCCAGTTTCATTTGTCTCCTGACTTGTCTGAGGGATGACCTCTC------------CTAGCCACCTCTGC--CCAGCCCCTCTGAGTAGGAAGTGTGATTTCCAGGGCTAATGCCTCCAT-CCCAGTCATC-AGCTGTGTGCAGCATGAC--TGTCCTGCTCTGAAAAACCTTTTTGAGTGTATTCTGGGGAGAAGGTACTCCATGCTCTAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
s panTro4.chr19              59050453 1086 +  63644993 TTCTT---TGTGGGTGAGGACTCTTTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTGTTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCAGGG----------TTCCC-TGCCCTGCACAAGTAGAGTGGGAGCGGCCCGTGGATCCCAGTGAACTGTGCTTTTCATTGTAGGCCCC-TCCCTGGAGGGGAAGA----GGGCAGTCTCCGCTGGTATCTCAGAAGTCTTCTTCTGAGGCCTAAGCCTCTCTTCCCAGGGCTC---------CCCTGGTCTCGCTGTCAGGCCCTAAGGTATGTCTTCCCTTG------GACT-AAAGCTCCTTGGAGCTCCCTTTTGACCTCAGTCTTCTCTGGGTTCCAGGTAACTTCCTTTAAAATAAAGACGCTCCTCTCTTAAAGTTTTGGATTCCTGCCCTGAT-GGTCTATGTCTCCCTGACTCTAAATTACCAATCCACTTGCTATG-GGATTCCTCCATGAGTGCAGATCGGCTCCCTCACAGCTGCGGTACCTTTGCACCCTCTTA--TCTTAGTAAGATTTCTATCTTCTCCCAGGTCTCTCTTGGGTACTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTATTAGCTTCTTTGGGTTAGGAGTGTTATTTCCTTTTGGTTTAAGGGTCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGTATGAGGGGGTTCAGCTCTTCATAGTTTTCGGCATCTCTGCTCGCCGTGGTTTTCCCCCACCCCCAATCTTTCTTCTCCTACCTACAGCTTACACACACACAC-ACACAC--------------------GCCCTTCTCTGTGAGCTGCCAGTTTCATTTGTCTCCTGACTTGTCTGAGGGATGACCTCTC------------CTAGCCACCTCTGTGGCCAGCCCCTCTGAGTAGGAAGTGTGATCTCCAGGGCTAATGCCTCCAT-CCCAGTCATC-AGCTGTGTGCAGCATGAC--TGTCCTGCTCTGAAAAACCTTTTTGAGTGTATTCTGGGGAGAAGGTACTCCATGCTCTAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55926700 1100 +  60714840 TTCCT---TCTGGGTGAGAACCCTTTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTGGTCCTCAGTATGGGGCTGTTTCTGTCTTTAAAGTAAGTGACTACTCCAGGG----------TGCCC-TGCCCTGCACAAGTAGAGTGGGAGCGGCCCCTGGATCCCAGGGAACTGTGCTTTTCATTGTAGGCCCCCTCCCTGGAGGGGAAGA----CGGCAATCTCCGCTGGTATCTCAGAAGTCTTCTTCTGAGGCATAAGCCTCTCTCCCCAGGGCTC---------CCCTGGTCTCGCTGTCAGGCCCTAAGATGTGTCTTCCCTTG------GACT-AAAGCTCCTTGGAACTCCCTTTTGACCTCAGTCTTTTCTGGGTTCCAGGTAACTTCCTTTAAAATAAAGACGCTCCTCTCTTTAAGTTTTGGATTACTGCCCTGAT-GGTACATGTTTCCCTGACTCTAAGTTACCAATCCACTTGATATG-GGATTCCTTCGTGTGTGCAGATCGGCTCCCTCACAGCTGCGGTACCTTTGCACCCTCTTA--TCTTAGTAAGATTTCTGTCTTCTCCGAGGTCTCTCTTGGATACTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTGTCAGCTTCTTTGAGTTAGGAGTGTTATTTCCTTTGGGTTTAAGGATCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGTATGAGTGGGTTCAGCTCTTCATAGTTTTCGGCATCTCTGCTCGCCGTCGTTTTCCCCCACCCCCAATCTTTCTT---CTACCTACAGCTTacgcacacacac-acacac----acacacacacacacaTGCCCTTCTCTGTGAGCTGCCAGTTTCATTTGTCTCCTGACTTGTCTGAGGGATGACCTCTC------------CTAGCCACCTCTGTGCCCAGCCCCTCTGAGTAGAAAGTATGATCTCCAGGGCTAATGCCTCCAT-CCCAGTCATC-AGCTGTGTGCAACATGAC--TGTCCTGCTCTGAAAAACCTTTTTGAGTGTAATCTGGGGAGAAGGTACTCCATGCTCTAGGAATTTTCCACTTTCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102692387 1075 - 106955855 TTCCT---TGTGGGTGAGGACCCTCTTGGTGTGACTTCCCTCTGTACTGAGGCTCTTAGTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCAGGG----------TGCCC-TGCCCTGCACAAGAAGAGTGGGAGCAGCCCCTGGATCCCAGGGAACTGTGCTTTTCATTGTAGGCCCCCTCCCTGGAGGGGAAGA----GGGCAATCTCCGCTGGTATCTCAGAAGTCTTCTTCTGAGGCATAAGCCTCTCTCCCCAGGGCTC---------GCCTGGTCTCGCTGTCAGGCCCTAAGGTGTGTCTTCCCCTG------GACT-AAAGCTCCTTGGAACTCCCTTTTGACCTCAGTCTTCTCTGGGTTCCAGGTAACTTCCTTTAAAATAAAGACGCTCCTCT----AAGTTTTGGATTCCTGCCCTGAT-GTTATATGTTTCCCTGACTCTAAATTACCAATCCACTTGATATG-GGATTCCTTCGTGTGTGCAGATCGGCTCCCTCACAGCTGTGGTACCTTTGCACCCTCTTA--TCTTAGTAAGATTTCTGTCTTCTCCCAGG--TCTCTTGGGTACTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTATCAGCTTCTTTGGGTTAGGAGTGTTATTTCCTTTTGGTTTAAGGATCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATGCA--CCCAT-CTGTATGAGTGGGTTCAGCTCTTCATAGTTTTCGGCATCTCTGCTCGCCGTCGTTTTCCCCCACCCCCAATCTTTCTTCTCCTGCTTACAGCTTACACACACACAC---------------------------ACCCTTCTCTGTGAGCTGCCAGTTTCATTTGTCTCCTGACTTGTCTGAGGGATGACCTCTC------------CTAGCCATCTCTGTGCCCAGCCCCTCTGAGTAGGAAGTGTGATCTCCAGGGCTAATGCCTCCAT-CCCAGTCATC-AGCTGTGTGCAGCATGACTTTGTCCTGCTCTGAAAAACCTTTTTGAGTGTAATCTGGGGAGAAGGTACTCCATGCTCTAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59980424 1094 +  64156825 TTCCT---TGTGGGTGAGGACCCTCTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTAGTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCCGGG----------TGCCC-TGCCCTGCACAAGTAGAGTGGGAGCGGCCCCTGGATCCCAGGGAACTGTGCTTTTCATTACAGGCCCCCTCCCTGGAGGGGAAGA----GGGCAATCTCCACTGGTATCTCAATAGTCTTCT----GAGCATAAGCCTCTCTCCCCAGGGCTC---------CCC-GGTCTCGCTGTCAGGCCCTAAGATGTGTCTTCCCTTG------GACT-CAAGTTCCTTGGAACTCCCTTTTGACCTCAGTCTTCTCTGGGTTCCATGTAATTTCCTTTAAAATAAAGATGCTTCTCTCTTTAAGTTTTGGGTTCCTGCCCTGAT-GGTGCCTGTTTCCCTGAGTCTAAATTACCAATCCACTTGATATG-GGATTCCTTCGTGTGTGCAGATTGGCTCCC-CACAGCTGTGGTACCTTTGCACCCTCTTATCTCTTAGTAAGATTTCTGTCTTCTCCCAGGTCTCTCTTGGGTGCTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTGTCAGTTTCTTTGGGTTAGGAGTGTTATTTCCTTTTGGTTTAAGGATCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGTCTGAGTGGGTTCAGCTCTTCATAGTTTTCGGCATCTCTGCTCGCCGTCATTTTCCCCCACCCCCAATCTTTCTTCTCTCACCTACAGCTTacacacacacacaacacac------------acacacaTGCCCTTCTCTGTGAGCTGCCAGTTTCGCTTGTCTGCTGGCTTGTCTGAGGGATGACCTCTT------------CTAGCCACCTCTGTACCCAGCCCCTCTGAGTAGGAAGTGTGATCTCCAGGGCTAATGCCTTCAT-CCCAGTCATC-AGCTGTGTGCAGCATGACTTTGTCCTGCTCTGAAAAATCTTTTTGAGTGTAATCTGGGGAGAAGGTACTCCATGCTACAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55005139 1094 +  59248254 TTCCT---TGTGGGTGAGGACCCTCTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTAGTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCCGGG----------TGCCC-TGCCCTGCACAAGTAGAGTGGGAGCGGCCCCTGGATCCCAGGGAACTGTGCTTTTCATTACAGGCCCCCTCCCTGGAGGGGAAGA----GGGCAATCTCCACTGGTATCTCAATAGTCTTCT----GAGCATAAGCCTCTCTCCCCAGGGCTC---------CCC-GGTCTCGCTGTCAGGCCCTAAGATGTGTCTTCCCTTG------GACT-CAAGTTCCTTGGAACTCCCTTTTGACCTCAGTCTTCTCTGGGTTCCATGTAATTTCCTTTAAAATAAAGATGCTTCTCTCTTTAAGTTTTGGGTTCCTGCCCTGAT-GGTGCCTGTTTCCCTGAGTCTAAATTACCAATCCACTTGATATG-GGATTCCTTCGTGTGTGCAGATTGGCTCCC-CACAGCTGTGGTACCTTTGCACCCTCTTATCTCTTAGTAAGATTTCTGTCTTCTCCCAGGTCTCTCTTGGGTGCTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTGTCAGTTTCTTTGGGTTAGGAGTGTTATTTCCTTTTGGTTTAAGGATCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGTCTGAGTGGGTTCAGCTCTTCATAGTTTTCGGCATCTCTGCTCGCCGTCATTTTCCCCCACCCCCAATCTTTCTTCTCTCACCTACAGCTTacacacacacacaacacac------------acacacaTGCCCTTCTCTGTGAGCTGCCAGTTTCGCTTGTCTGCTGGCTTGTCTGAGGGATGACCTCTT------------CTAGCCACCTCTGTACCCAGCCCCTCTGAGTAGGAAGTGTGATCTGCAGGGCTAATGCCTTCAT-CCCAGTCATC-AGCTGTGTGCAGCATGACTTTGTCCTGCTCTGAAAAATCTTTTTGAGTGTAATCTGGGGAGAAGGTACTCCATGCTACAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47111414 1093 +  51301725 TTCCT---TGTGGGTGAGGACCCTCTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTAGTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCCGGG----------TGCCC-TGCCCTGCACAAGTAGAGTGGGAGCGGCCCCTGGATCCCAGGGAACTGTGCTGTTCATTATAGGCCCCCTCCCTGGAGGGGAAGA----GGGCAATCTCCACTGGTATCTCAGAAGTCTTCT----GAGCATAAACCTCTCTCCCCAGGGCTC---------CCCTGGTCTCGCTGTCAGGCCCTAAGATGTGTCTTCCCTTG------GACT-CAAGTTCCTTGGAACTCCCTTTTGACCTCAGTCTTCTCTAGGTTCCatgtaatttcctttaaaataaagatgCTCCTCTTTTTAAGTTTTGGGTTCCTGCCCTGAT-GGTGCCTGTTTCCCTGAGTCTAAATCACCAATCCACTTGATATG-GGATTCCTTCGTGTGTGCAGATTGGCTCCC-CACAACTGTGGTACCTTTGCACCCTCTTA--TCTTAGTAAGATTTCTGTCTTCTCCCAGTTCTCTCTTGGGTGCTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTGTCAGTTTCTTTGGGTTAGGAGTATTATTTCCTTTTGGTTTAAGGATCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGTCTGAGTGGGTTCAGCTCTTCATAGTTTTCGGCATCTCTGCTTGCCGTcattttcccccacccccaatcttTCTTCTCTCACCTAcagcttacacacacacacaacacac------------acgcacacgcccTTCTCTGTGAGCTGCCAGTTTCGCTTGTCTGCTGGCTTGTCTGAGGGATGACCTCTT------------CTAGCCACCTCTGTACCCAGCCCCTCTGAGTAGGAAGTGTGATCTGCAGGGCTAATGCCTTCAT-CCCAGTCATC-AGCTGTGTGCAGCATGACTTTGTCCTGCTCTGAAAAATCTTTTTGAGTGTAATCTGGGGAGAAGGTACTCCATGCTACAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46818602 1096 +  50890351 TTCCT---TGTGGGTGAGGACCCTCTTGGTGTGACTTCCCTCTGTATTGAGGCTCTTAGTCCTCAGTATGGGGCTGTTTCTGTCTTTACAGTAAGTGACTACTCCCGGGTGCCCTGCCCTGCCC-TGCCCTGCACAAGTAGTGTGGGAGCGGCCCCTGGATCCCAGGGAACTGTGCTTTTCATTATAGG-CCCCTCCCTGGA-GGGAAGA----GGGCAATCTCCACTGGTATCTCAGAAGTCTTCT----GAGCATAAGCCTCTCTCCCCAGGGCTC---------CCCGGGTCTCGCTGTCAGGCCCTAAGATGTGTCTTCCCTTG------GACT-CAAGCTCCTTGGAACTCCCTTTTGACCTCGGTCTTCTCTGGGTTCCATGTAATTTCCTTTAAAATAAAGACGCTCCTCTCTTTAAGTTTTGGGTTCCTGCCCTGAT-GGTGCATGTTTCCCTGAGTCTAAATGACCAATCCACTTGATACG-GGATTCCTTCGTGTGTGCAGATTGGCTCCC-CACAGCTGTGGTACCTTTGCACCC-------TCTTAGTAAGATTTCTGTCTTCTCCCAGGTCTCTCTTGGGTGCTGCCTTCTGCCCCCAAATCTCT--AACCCTTCTTGGTGTCAGTTTCTTTGGGTTAGGAGTGTTATTTCCTTTTGGTTTAAGGATCCTGCTCTGGAATAAATTTCTTGGTGGTTTAAGTCC--CTTCTACTTGGCATTCAGCCCTGT-CTGTCTGAGTGGGCTCAGCTCTTCATAGTTTTCGGCATCTCTGCTCGCCGTCATTTTCCCCCACCCCCAATCTTTCTTCTCTCACCTACAGCTTacacacacacacaacacac------------acgcacacGCCCTTCTCTGTGAGCTGCCAGTTTCGCTTGTCTGCTGGCTTGTCTGAGGCATGACCTCTT------------CTAGCCACCTCTGTACCCAGCCCCTCTGAGTAGGAAGTGTGATCTGCAGGGCTAATGCCTTCAT-CCCAGTCATC-AGCTGTGTGCAGCATGACTTTGTCCTGCTCTGAAAAATCTTTTTGAGTGTGATCTGGGGAGAAGGTACTCCATGCTACAGGAATTTTCCACTTCCTGAGTC-AGAGGCACACAAAAAAGTATGTAACTTTTCTTGTTTCAACA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45394701 1049 +  49145316 TTCC----GGTGGGTGAGGACCCTCTTGGTGTGACTTTTCTCTGTATTGAGGCTCTTATTCCTCAGTATGGGGCTGTTTCTGCCTTTACGTTAATTGACTACT-CAGGG----------TGCCCTTGCCCTGCACTAGTAGAATGGGCACAGCCCCTGGATCTCAGGGAACTATGCTTTTCATGATAGGCCCCCTCCCTGG--GGGAAGA----GAGGAACCTCCGCTGGTGGCTCAGATGTCCTCT----TAGCATAAGCCTCTCTCTCCAGGGC------------------------------CCCTAAGGTGTGTCTTCCCCTA------GACTAAAAGCTCCTTGTGACTCCCTTTTGACCTCAGTCTCCTCTGGGTTCTATGGAACTTCCTTTAGAATAAAGATGCTCCTCTCTTTAAGTTTTGGGCTCCTGCCGTGAT-GGTGTATGTTTTCCTGGGTCTCTATCACCAATCCACTTGATACG-GGATTACTTCGTGTGTGCAGACCGGCTCCCTCACAGCTGCGGTACTTTTTCAGCCTC--A--TCTTGGTCAGATTTCTCTCTTCTCTCAGGTCTGTCTTGGGTACTGCCTTCTGCCCCCAAATCTCT-----CATCCTTGGTATCAGCCTCTTTGGGTTAGGAGTGTTATTACCTTTTGGCTTAAGGATTCTGTTCTGGAATACATTTCTTGGTAGTTTAAGTCA--CTTCTACTTGGCATTCAGCGCTGT-CTGTATCAGTGGGTTCAGGTCTTCAGAGTTTTAGGCACCTCTGGTCTTCACTG-TTTCCCCCACCCCCAGCCTTCCTTCCCTCACCTACAGCTTACAGACACACAC---------------------------GCCCTTCTCTGTGAGCTGCCAGTTTCATTTGCCTCCTGACTTGTCTGAGGGGTGGCCTCTC------------CTGGCCACCTCTGTCCCCAGCCCCTCTGAGTAGGACGTGTGATCTCCAGGGCTAATGCCTTCAT-CCCAGTCATC-AGCTGTGTGCTGCGTGACTTCGCTCTGCTCTG-AAAACCCTTTTGAGTGTAGTCTGGGGAGAAGGTGCTCCATGCTCTAGGAATTTTCCGCTTCCTGGGTC-AGAGGCACACAACGAAGTGTGTATCTTTTCTTGTTTCAACA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3649621  914 + 145441459 TCCCT---TGATGTTAAGGACCCTC--AATCTGGCTACCCTCCAGGTTGAAACCCTTGGTTCTGGTAGTGGAG------CTGCCTTTATAGTTAGGAGCTATATTGGGG----------CACTCTTGCCTTGTATCAG----------------CCTAGTTCT--GAGAGCCTTGCTTGATATTGCA-------CCCATGGGGGAGAAGGTTACATACAACTTGTGCTAGGAACTCATAAACCCTCT----TAG----GGTCTTCCTCTCCAGGATGC---------CCT--GTTTCGGGGTCAACTTTTGTAGTGTGGATTTCCCTGCCAACCGACC-TCCTCTCCTCAG-----TCCTTTGTCCTCAGGCCCTTCTGAATTAAACTCTGCTTCCTTCAGAATAAAAATAGGTGTCT---------TTGA----CCTCCCTGATGGGTTCATGTTT--CTGAGTCTAAATTGCCAGTCTATCTGATGTG-GAACTCCTCCATGTGTGCAGATCTGTTCACTCATAGCTAAGGTTCTT------CTCTTTA--TCTTTTTGAGATTTCTATCTTCTCATCGCCCTC-CTTGAGTGCTGCTTCCTGCTTCCAAGTTTCTATAGCCATTTTTAGTGTC---------------------------------------GGGCTTCTGCTGTGGAATAAATTTCTCGAAAGTGTAAGACC--CTCTTGTTTGATATCCTGCCTTGTCCTGTATGAATGGGCCTTGATCTTCATA-------------------------------------------TCTCTCTTCC----CCTTCAGCTCACAC-CTCTTAG------------------------------CCTTTCCAGGAGCTGCCAGCCTCATGTATTCTGTGACTTACCT--AGAGTGGCCTCTC------------TCAGTCACCTCTGCTCTCAGCCCCTCAGTTTAGAAAGTACCATTTCTAGGGCTAATGCTTCCAT-CCCAGCAGTCTACCTGTGTGCTGCTTG---------TGCTCT--------------AGTGTCATCTAGAGTGCAGATATTCTGTATTTTAGAAAATTTCTACTTCCTAAGTCAAGAGGCCCACCAATAAG-ATATACTGTTCTTTGTTTCAACA
i mm10.chr7                 I 329 I 117
s canFam3.chr1               19610867  844 - 122678785 -TCCTGGCTGTGGGTAAGGCCGCTCTTGGGCTTCCTGCCCT-----------------------------------------------------------------GGG----------CTCCC-TGCCCTGGGCCTG----------------------TCTCAGCCA------CACTTCAGGAGAGACCCCCTCTCTGGG------------GAGTGACCTC---------------------------TGGCATAACACTC---CTGCAAGGCTCGTGGATCCTCCCTGATCCTGGTGTC-GACCCTAAGTTGTGGCTT-CCTTG------GGCC-AGAGCTCCTGGTGGCTCCCCTTTGACCTCAGCGTCCTTTGGGTTGCATAGA----CTGTTAGGGTGAAGATGCCCCTCTCTCCTGGTCCTGG----CTG------T-GTTACCTGT--------------GTTACCACCACATCTGATACGTTAACTCCTTCGAGTGCACAGAT-GGCTCTCTCATAGCTGTGGTCCCCTTCCACCTTCCTG------------------------------GCCCTCCGGGGGTGATGCTTTCTACTCCCATGTGTCT--AAA---TCTTGGTATCGGTGTCTTTGGGTTGGG-----CCGTCTCTTGTGTTTTAAGGATTCTGTTCTGGAATGAA---CTTGGTGGTGTAAGGCCCTCTTCTGTTTGGGACCCAGTCCTGT-CACGACGGGTGGGTTTAGCTGTTCCTGATTCCAGGTATTTC---------CCATCTCCCGCTGCTCCCCCTCCTTCC-------CCTGCAGTTCTCACA---GCAT-CTGAAC---------------------TTTCTCCCTGAAAACTGTC--------------TCTGACCTGTCTGAGGGCTAACCTCCCCGAGTTAGGAGTCTAGACACCTGTGTGCCCTGCCCCTCTGTG-------------------------GGCCTTCATCCCCAGCACTC-AGCCATGGGCTGCTTGACT---TCTTGCTCTAAAATGTC--------TGTCATCTGGTGAGAAAGTATCCCGTGCTCTGGGTACTTCCCACTTCCTGGGTC-GGAGGTACACGAA-AAGTACATTTGTTTCCTTGTTTCAGCA
i canFam3.chr1              C 0 C 0

a score=206362.000000
s hg38.chr19_GL949751v2_alt    117573 64 +   1002683 AACTTATGGGGTCCCCTGTTGGCCAGACAC-TATGCTGGGCAGTCAAGCGAGCATCAGGAGAACT
s panTro4.chr19              59051539 64 +  63644993 AACTTATGGGGTCCCCTGTTGGCCAGACAC-TATGCTGGGCAGTCAAGCGAGCATCAGGAGAACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55927800 64 +  60714840 AACTTATAGGGTCCCCTGTTGGCCAGACAC-TATGCTGGGCAGTCAAGCGAGCCTCAGGAGAACT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102693462 64 - 106955855 AACTTACAGGGTCCCCTGTTGGCCAGACAC-CATGCTGGGCAGTCAAGCGAGCATCAGGAGAACT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59981518 64 +  64156825 AACTTATGGGATCCTCTGTTGGCCAGACAC-TGTGCTGGGCAGTCAAGTGAGCATCAGTAGAACT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55006233 64 +  59248254 AACTTATGGGATCCTCTGTTGGCCAGACAC-TGTGCTGGGCAGTCAAGTGAGCATCAGGAGAACT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47112507 64 +  51301725 AACTTATGGGATCCTCTGTTGGCCAGACAC-TATGCTGGGCAGTCAAGTGAGCATCAGGAGAACT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46819698 64 +  50890351 AACTTATGGGATCCTCTGTTGGCCAGACAC-TATGCTGGGCAGTCAAGTGAGCATCAGGAGAACT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45395750 65 +  49145316 AACTTCTAGGGTCTCTTGTTGGCCAGACACTTATGCTGGGCAGTCACACGAGCATCAGGAGAACT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19611711 57 - 122678785 AACTTCCAGAG--------TGTTCAGACCCCTGCAGTGGGCTGTCAGGGCAGCATAAGTAGAACT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3650535 117 + 145441459 I

a score=10173211.000000
s hg38.chr19_GL949751v2_alt    117637 2801 +   1002683 GGGGCTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTCTCTTTACCAGTCCCACCTACCTCACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCAGGGAATACGTGTTAATTCCTCTCCAATCTCTCCTAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTGCTGCACCTGTAGCCACATGCTCCCTCTTCTGAGGACTGCTCTTTAGATACCTGCCACCTGGGCAGGATTCTCACAGCCTTGTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATA--ATCTGGGTCTTCAGAGAGGAGGGCACAGGAAGGCGGCTCAGGACCTCTGGGTGTTGACCAGC--GGGAGGGGCTACATA-TGCAGATGCTGAGGACCTAAGAGAATCAGCTCTAAGATGGATTGGGGGTAGGGGTTGGGGGGGGTCCTCGAGTCCCTAGC---ATAAGGAA--GAATCACTGGA--------------GTGGGTACTGGGACATCCCCTCCCACACTGACTTCTCAATTCTCTCCATCCCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGGGGCCTGGACGCCTTTGTCctgagggtagagggaactgggagagtggactgctgggtcccagggagaaggagctgtggg------------ccccagttcctgggtcctgagg---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAAATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCCAGAGCCTGAGTCCCAGAGAGGTGGGAAGGTCACCAGATTCTTGAGATCCCAAG-GGGCGGAGGCAGAGCGGCCAGACCCCAGAG-GTCCTCAAGAGAAGTAAGGTTTCTGCACCTAAGGGAAGTGAAGAGGCAGCGGACTCAGAGCTCAGAAAGTAGGGTCACGAGGCTCAGGTCGGAGTGTCTGCTGGCCCTTAGTCAGCTCCTTTCCCACCTTTGAGAGCCCCCCTGCCAACTG-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGCAAAGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGTAGAGAAGAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGC-GGAACCCTAGCTGATGGGCTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCGA-CACCTTTGGGATGGGGATGGGCATGGGAATGGGCTGGCCAGCAGGAG--GCCAGTCATTT--ATGCTCCTGGGAGTTGGGGCCTGGATTCCTCAGGCGGACA-GGGCCAACAGCCGGGATTAGGGATTTGAGAGACAGGATTGGGAGGGCTTAGCAGCTGCACGC---GTGGGGCAGGAAGGAGGTCAGACAGAATCTCAGGGTCCCCTGGGTGTCTGGGTAGACCGTGGGGCCTTTGTGAAGAGGAGCGACTTGGGGGAAGGTGAGTGCAGGTTGAGCTTGGGCCACAGAGTAAAAGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCACCCAGAGGG--CCCTGGTCCTAGGGAGAGCACAGTGGGTAGAGACAAGGCAGAACATGGAGAAGGCAGAGAACCAGGC-CTGAAGGAAGACAGGA----GTCTGGGACAAAGCTGGATGTTGGGGTCCCAGGTTCTAAA-A-TCCGGGATTGT-GGGGTATGAGTTCAAAGGGATAC---------------AAACTGTACAGACTTGCTGAAACCAGAAAGACAGGGAGGGGAGAGCCGGGTCCTCAGGGAAGCTGTGGGTGGGAGAGGGTCAGGAAGTGGAAGATGACAGGGTTGGGTGTCAGACTCTGAGGGGTTTGGGAACCAGGGGCTT-TCGGGGAGATGATGGGTCCTTGAACAGAGCAGAG----ATTTGGAACCAAGGCTAAGATGTTAAATCCTAAAGGGGCCTTGA-----GGGGAGGGCAGGAGCGAGGCTTAGGAATCTGGGCTCTCTCAGGGATAAATGGGTAGGGTT--GGGGGCCTAGTGATGACAGAT---ATCACAATTCTAAACAGCAAGCTCCTCACAAATGGG------GGTTATCATTGTTACTGCTGGAGCAGGTCGG---AGGGTATCTGTATGCCAGAGGCAGTCACAG-TGGTGGGCGGGCT-CAGTTGAGAAATCTGGGCT----------GTCAGGTGAGGTGCAGATGGAGGCCAAGTCGTGGGATGGCACAAGGACCTCT-GGGTCTTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAAGGTGTGGGGAGAGGAGG-----GAGCAGTGGGATCCCAAGATGTC--AAGGCTAAGATTGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCCACCCC-GAAGGGGATGGCGTGGAGG---CT-TTGGGTCTCCACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGCTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
s panTro4.chr19              59051603 2800 +  63644993 GGGGCTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTCTCTTTACCAGTCCCACCTACCTCACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCAGGGAATACGTGTTAATTCCTCTCCAATCTCTCCTAGCAGCGTCAGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTGCTGCACCTGTAGCCACATGCTCCCTCTTCTGAGAACTGCTCTTTAGATACCTGCCGCCTGGGCAGGATTCTCACAGCCTTGTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATA--ATCTGGGTCTTCAGAGAGGAGGGCACAGGAAGGCGGCTCAGGACCTCTGGGTGTTGACCAGC--GGGAGGGGCTACATA-TGCAGATGCTGAGGACCTAAGAGAATCAGCTCTAAGATGGATTGGGAGTAGGGGTTGGGGGGG-TCCTCGAGTCCCTAGC---ATAAGGAA--GAATCACTGGA--------------GTGGGTACTGGGACATCCCCTCCCACACTGACTTCTCAATTCTCTCCATCCCTCAGCTCCACAATGCAGCCAACGCAAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGGGGCCTGGACGCCTTTGTCctgagggtagagggaactgggagagtggactgctgggtcccagggagaaggagctgtggg------------ccccagtttccgggtcctgagg---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCCAGAGCCTGAGTCCCAGAGAGGTGGGAAGGTCACCGGATTCTTGAGATCCCAAG-GGGCGGAGGCAGAGCGGCCAGACCCCAGAG-GTCCTCAAGAGAAGTAAGGTTTCTGCACCTAAGGGAAGTGAAGAGGCAGCGGACTCAGAGCTCAGAAAGTAGGGTCACGAGGCTCAGGTCTGAGTGTCTGCTGGCCCTTAGTCAGCTCCTTTCCCACCTTTGAGAGCCCCCCTGCCAACTG-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGCAAGGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGTAGAGAAGAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGC-GGAACCCTAGCTGATGGGCTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCGA-CACCTTTGGGATGGGGATGGGCATGGGAATGGGCTGGCCAGCAGGAG--GCCAGTCATTT--AGGCTCCTGGGAGTTGGGGCCTGGATTCCTCAGGCGGACA-GGGCCAACAGCCGGGATTAGGGATTTGAGAGACAGGATTGGGAGGGCTTGGCAGCTGCACGC---GTGGGGCAGGGAGGAGGTCAGACAGAATCTCAGGGTCCCCTGGGTGTCTGGGTAGACAGTGGGGCCTTCGTGAAGAGGAGCGACTTGGGGGAAGGTGAGTGCAGGTTGAGCTTGGGCCACAGAGTAAAAGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCACCCAGAGGG--CCCTGGTCCTAGGGAGAGCACAGTGGGTAGAGACAAGGCAGAACATGGAGAAGGCAGAGAACCAGGC-CTGAAGGAAGACAGGA----GTCTGGGACAAAGCTGGATGTTGGGGTCCCAGGTTCTAAA-A-TCCAGGATTGT-GGGGTATGAGTTCAAAGGGATAC---------------AAACTGTACAGACTTGCTGAAACCAGAAAGACAGGGAGGGGAGAGCCGGGTCCTCAGGGAAGCTGTGGGTGGGAGAGGGTCAGGAAGTGGAAGATGACAGGGTCGGGTGTCAGACTCTGAGGGGTTTGGGAACCAGGGGCTT-TCGGGGAGATGATGGGTCCTTGAACAGAGCAGAG----ATTTGGAACCAAGGCTAAGATGTTAAATCCTAAAGGGGCCTTGA-----GGGGAGGGCAGGAGCGAGGCTTAGGAATCTGGGCTCTCTCAGGGATAAATGGGTAGGGTT--GGGGGTCTAGTGATGACAGAT---ATCACGATTCTAAACAGCAAGCTCCTCACAAATGGG------GATTATCATTGTTACTGCTGGAGCAGGTCGG---AGGGTATCTGTATGCCAGAGGCAGTCACAG-CGGTGGGCGGGCT-CAGTTGAGAAATCTGGGCT----------GTTAGGTGAGGTGCAGATGGAGGCCAAGTCGTGGGATGGCACAAGGACCTCT-GGGTCTTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAAGGTGTGGGGAGAGGAGG-----GAGCAGTGGGATCCCAAGATGTC--AAGGCTAAGATTGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCCACCCC-GAAGGGGATGGCGTGGAGG---CT-TTGGGTCTCCACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGCTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55927864 2787 +  60714840 GGGGCTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTCCCTTTACCAGTCCCACCTACCTCACTATGCTGACTAGGTCCGT-ATCTCTGGGTTTTTACCAGCCAGGGAATATGTGTTAATTCCTCTCCAATCTCTCCTAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGTGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGA-TGACTTCCTGCTGCACCTGTAGCCACGTGCTCCCTCTTCTGAGGACTGCTCTTTAGATACCTGCCGCCTGGGCAGGATTCTCACAGCCTTGTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATA--ATCTGGGTCTTCAGAGAGGAGAGCACAGGAAGGTGGCTCAGGACCTCTGGGTGTTGACCAGC--AGGAGGGGCTACATA-TGCAGATGCTGAGGACCTAAGAGAATCAGCTCTAAGATGGATTGGGGGTAGGGGTTGGGGGGGTTCCTCCAGTCCCTAGC---ATAAGGAA--GAGTCACTGGA--------------GTGGGTGCTGGGACATCCCCTCCCACACTGACTTCTCAATTCTCTCCATCCCTCAGCTCCACAATGCAGCCAATGCGAACCAGAAAGAAAAGTATGAGGCTGACCTGAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGggg---------------cctgagggtagagggaactcggagagtggactgctgggtcccagggagaaggagctgtggg------------ccccagttcctgggtcctgagg---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCCAGAGCCTGAGTCCCAGAGAGGTGGGGAGGTCACCAGATTCTTGAGATCCCAAG-GGGTGGAGGCAGAATGGCCAGACCCCAGAG-TTCCTCAAGAGAAGTAAGGTTTCTGTACCTAAGGGAAGGGAAGAGACAGCGGACTCAGAGCTCAGAAAGTAGGGTCACGAGGCTCAGGTCTGAGTGTCTGCTGGCCCTTAGTCAGCTCCTTTCCCACCTTTGAGAGCCCCCCTGCCAACTG-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGCAAGGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGTAGAGAACAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGCGGGAACCCTGGCTGATGGGCTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCGA-CACCTTTGGGATGGGGATGGGCATGGGAATGGGCTGGCCAGCCGGAG--GCCAGTCATTT--AGGCTCCTGGGAGTTGGGGCCCGGATTCCTCAGGCGGACA-GGGCCAAGAGCCGGGATTAGGGATTTGAGAG--AGGATTGGGAGGGCTTAGCAGCTGCCTGG---GTGGGGCAGGAAGGAGGTCAGACAGAATCTCAGGGTCCCCTGGGTGTCTGGGTAGACAGTGGGGCCTTCATGAAGAGGAGCGATTTGGGGGAAGGTGAGTGCAGGTTGAGCTTGGACCACAGAGTAACAGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCACCCAGAGGG--CCCTGGTCCTAGGGAGAGCACAGTGGGTAGAGACAAGGCAGAACATGGAGAAGGCAGAGAACCAGGC-CTGAAGGAAGAGAGGA----GTCTGGGACAAAGCTGGATGTTGGGGTCCCAGGTTCTAAA-A-TCCGGGATTGT-GGGGTATGAGTTCAAAGGGATAC---------------AAACTGTACGGACTTGTCGAAACCAGAAAGACAGGGAGGGGAGAGACGGGTCCTCAGGGAAGCTGTGGGTGGGAGAGTGTCAGGAAGTGGAAGATGACAGGGTCAGGTGTCAGACCCTGAGGGGTTTGCGAACCAGGGGCTT-TCGGGGAGATGATGGGTCCTTGAACAGAGCAGGG----ATTTGGAACCGAGGCTAAGATGTTAAATCCTAAAGGGGCCTTGA-----GGGGAGGGCAGAAGCGAGGCTTATGAATCTGGGCTCCCTCAGGGATAAATGGGTACGGTTG-GGGGGCCTAGTGATGACAAATATCATCACGATTCTAAACAGCAAGCTCCTCACGAATGGG------GGTTATCATTGTTACTGCTGGAGCAAGTCGG---AGGGGATCTGTATGCCAGAGGCAGTCACAG-TGGTGGGCGGGCT-CAGTTGAGAAATCTGGGCT----------GTCAGGTGAGGTGCAGATGGAGGCCAAGTCGTGGGATGGCACAAGGACCTCT-GGGTCTTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAAGGTGTGGGGAGAGGAGG-----GAGCAGTGGGATCCCAAGATGTC--AAGGCTAAGATTGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCAT-CTGCCCCACCCC-GAAGGGGCTGGCGTGGAGG---CT-TTGGGTCTCCACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGCTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102693526 2803 - 106955855 GGGTCTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTCCCCTTACCAGTCCCACCTACCTCACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCGGGGAATACGTGTTAATTCCTCTCCAATCTCTCCTAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTGCTGCACCTGTAGCCATGTGCTCCCTCCTCTGAGGACTGCTCTTTAGATACCTGCCGCCTGGGCAGGATTCTCACAGCCTTGTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATA--ATCTGGGTCTTCAGAGAGCAGGGCACAGGAAGGCGGCTCAGGACCTCTGGGTGTTGACCAGG--GGGAGGGGCTACATA-TGCAGATGCTGAGGACCTAAGAGAATCAGCTCTAAGATGGATTGGGGGTAGGGGTTGGGGGG--TCCTTGAGTCCCTAGC---ATAAGGAA--GAATCACTGGA--------------GTGGGTACTGGGACATCCCCTCCCACACTGACTTCTCAATTCTCTCCAT-CCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGGGGCCTGGACGCCTTTGTCCTGAGGGTAGAGGGAACTGGGAGAGTGGACTGCTGGGTCCCAGGGAGAAGGAGCTGTGGG------------CCCCAGTTCCCGGGTCCTGAGG---TCTGACTTTCTTGTTTTT-CCCATCTGCAGCGGCTAAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCCAGAGCCTGAGTCCCAGAGAGGTAGGGAGGTCACCAGATTTTTGAGATCCCAAG-GGGTGGAGGCAGAGCGGCCAGACCCCAGAG-TTCCTCAAGAGAAGTAAGGTCTCTGCACCTAAGGGAAGGGAAGAGGCAGCGGACTCAGAGCTCAGAAAGTAGGGTCACGAGGCTCGGGTCCGAGTGTCTGCTGGCCCTTAGTCAGCTCCTTTCCCACCTTTGAGAGCCCCCCTGCCAACTG-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGCAAGGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGTAGAGAAGAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGCGGGAACCCTGGCTGATGGGCTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCGA-CACTTTtgggatggggatgggcgtgggaatgggctggccaGCAGGAG--GCCAGTCGTTT--AGGCTCCTGGGAGTTGGGGCCTGGATTCCTCAGGCGGACA-GGGCCAGCAGCCGGGATTAGGGATTTGAGAGACAGGATTGGGAGGGCTTAGCAGCTGCCTGG---GTGGAGCAGGGAGGGGGTCAGACAGAATCTCAGGGTCCCCTGGGTGTCTGAGTAGACAGTGGGGCCTTCGTGAAGAGGAGTGATTTGGGGGAAGGTGAATGCAGGTTGAGTTTGGGCCACAGAGTAAGAGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCACCCAGAGGG--CCCTGGTCCTAGGGAGAGCACAGTGGGTAGAGACAAGGCAGAACATGGAGAAGGCAGAGAACCAGGC-CTGAAGGAAGAGAGGA----GTCTGGGACAAAGCTGGATGTTGGGGTCCCAGGTTCTAAA-A-TCCAGGATTGT-GGGGTATGAGTTCAAAGGGATAC---------------AAACTGTACGGACTTGTTGAAACCAGAAAGACAGGGAGGAGAGAACTGGGTCCACAGGGAAGCTGTGGGTGGGAGAGGGTCAGGAAGTGGAAGATGACAGAGTCAGGTGTCAGACTCTGAGGGGTTTGGGAACCAGGGGCTT-TCGGGGAGATGATGGGTCCTTGAACAGAGCAGGG----ATTTGGAACCGAGGCTAAGATGTTAAATCCTAAAGGGGCCTTGA-----GGGGAGGGCAGGAGCGAGGCTTATGAATCTGGGCTTCCTCAGGGATAAATGGGTAGGGTTGAAGGGGCCTAGTGATGACAAATATCATCACGATTCTAAACAGCAAGCTCCTCACAAATGGG------GGTGATCATTATTACTGCTGGAGCAAGTCGG---AGGGTATCTGTATGCCAGAGGCAGTCACAG-TGGTGGGCAGGCT-CAGCTGAGAAATCTGGGCT----------GTCA-GTGAGGTGCAGATGGAGGCCAAGTCGTGGGATGGCACAAGGACCTCT-GGGTCTTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAAGGTGTGGGGAGAGGAGA-----GAGCAGTGGGATCCCAAGATGTC--AAGGCTAAGATTGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCCACCCC-GAAGGGGCTGGCGTGGAGG---TT-TTGGGTCTCCACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGCTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59981582 2801 +  64156825 GGGACTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTTCCTTTACCAGTCCCACCTACCTAACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCGGAGAATACGTGTTAATTCCTCTCCAATCTCTCCCAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTGCTGCACCTGTAGCCATGTGCTCCCTCTTCGGAGGACTGCTCTTTAGATACCTGCCGCCTGGGCAGGATTCTCACAGCCTTCTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATC--ATCTGGGTCTTCAGAGAGGAGGGCACAGGAAGAAGGTTCAGGACCTCTGGGTGTTAACCAGG--GGGAGGGGCTACATATTGCAGATGCTGAGGACCTAAGAGAATAGGCTCTAAGACTCATTGGGGGTAGGGGTTGGGGGG--TCCTCGAGTCCCTAGC---ATAAGGAA--GACTCAGTGGA--------------GTGGGTACTGGGACATCCCCTCCCACACTGACTTCTGAATTCCCTCCATCCCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGGGGCCTGGACGcctgtgtcctgagggttgagggaactgggagagtggactgctgggtcccagggagaaggagctgtggg------------tcccagttcccggatcctgagg---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCTAGAGCCTGAGTCCTAGACAGGTGGGAAGGTCACCAGATTCTTGAGATCTCAAG-GGGCGGAGGCAGCACGGCCAGACCCCAGAG-TTTTTCAAGAGAAGTAGGGTTTCTGGAGCTAAGGGAAG-GAAGAGGCAGCAGACTCAGAGCTCAGAAAGTAGGGTCATGAGGCTCAGGTCTGAGTGTCTGCTGGCCCTTAGTCACCTCCTTTCCCGCCTTTGAGAG-CCCCCTGCCAACTA-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGTAAGGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGTGGAGAAGAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGCGGGAACCCTGGCTGATGGCTTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAGGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCCA-CACCTTTGGGA------------TGGGGATGGGCTGGCCAGCAGGAG--GCCAGTCATTT--AGGCTCCTGGGAGTTGGGGCCTGGATTCCTCAGGCAGACA-GGGCCAGCAGCCGGGATTAGGGATTTGAGAGACAGGATTGGGAGGGCTTAGCAGCTGCCTGG---GTGGGGCAGGGAGGAGGTCAGACAGAATCTCAGGGTCCCCTGGGTGTCTGGGTAGACAGCGGGGCCTTCGTGAAGAGGAGCGATTTGGGGGAATGTGAATGCAGGTTGAGCTTGAGCCACAGAGTAAGCGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCATCCAGAGGA--CGCTGGTCCTAGGGAGAGCACAGTGGGTAGAGAC-AGGCAGAACATGGAGAAGGCAGAGAACTGGGC-CTGAAGGAAGAGAGGA----ATCTGGGACGAAGCTGGATATTGGGGTCCCAGGTTCTGAA-A-TCTGGGATTGT-GGGGTATGAGTTCAAAGGGATAC---------------AAACTGTATGGACTTGTTGAAACCAGAAACACAGGGAGGGGAGAGCCGGGTCCTCAGGGAAGCTCTGGGTGGGAAAGGGTCAGGAAGTGGACGATGACAGGGTTGGGTGTCAGATTCTGAGGGGTTTGGGAACCAGGGGCTT-TTGGGGAGATGATGGGTCCTTGAACAGAGCAGGG----ATTTGGAACTGAGACTAAGATGTTAAATGCTAAAGGGGCCTTGA-----GAGGAGGGCAGGAGCGAGGCTTATGGATCTTCGCTCCCGCTGGGATAAATGGGTGGGGTTG-GGGGACCTAGTGATGACAAATACCATCATGATTCTAAACAGCAAGCTCCTCACAAATGGG------GGTTATCATTATTACTGCTGGAGCAAGCTGG---AGGGTATCCGTATGCCAGAGGCAGT--CAG-TGGTGGGCAGGCT-CAGTTGAGAAATCTGGACTCAGTTGAGAAATCAGGTGAGGTACAGAT-GAGGCCAAGTCATGGGATGGCACAAGGACCTCTGGGGTTGTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAACGTGTGGGAAGAGGAGGGAGCAGAGCAGTGGGATCCCAAGATGTC--AAGCCCTG---TGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCTACCCCAGAAGGGGCTGGCGTGGAGG---CT-TTGGGTCTCTACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGGTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55006297 2801 +  59248254 GGGACTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTTCCTTTACCAGTCCCACCTACCTAACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCGGAGAATACGTGTTAATTCCTCTCCAATCTCTCCCAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTGCTGCACCTGTAGCCATGTGCTCCCTCTTCGGAGGACTGCTCTTTAGATACCTGCCGCCTGGGCAGGATTCTCACAGCCTTCTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATC--ATCTGGGTCTTCAGAGAGGAGGGCACAGGAAGAAGGTTCAGGACCTCTGGGTGTTAACCAGG--GGGAGGGGCTACATATTGCAGATGCTGAGGACCTAAGAGAATAGGCTCTAAGACTCATTGGGGGTAGGGGTTGGGGGG--TCCTCGAGTCCCTAGC---ATAAGGAA--GACTCAGTGGA--------------GTGGGTACTGGGACATCCCCTCCCACACTGACTTCTGAATTCCCTCCATCCCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGggggctgggggcctggacgcctgtgtcctgagggttgagggaactgggagagtggactgctgggtcccagggagaaggagctgtggg------------tcCCAGTTCCCGGATCCTGAGG---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCTAGAGCCTGAGTCCTAGACAGGTGGGAAGGTCACCAGATTCTTGAGATCTCAAG-GGGCGGAGGCAGCACGGCCAGACCCCAGAG-TTTTTCAAGAGAAGTAGGGTTTCTGGAGCTAAGGGAAG-GAAGAGGCAGCAGACTCAGAGCTCAGAAAGTAGGGTCATGAGGCTCAGGTCTGAGTGTCTGCTGGCCCTTAGTCACCTCCTTTCCCGCCTTTGAGAG-CCCCCTGCCAACTA-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGTAAGGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGTGGAGAAGAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGCGGGAACCCTGGCTGATGGCTTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAGGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCCA-CACCTTTGGGA------------TGGGGATGGGCTGGCCAGCAGGAG--GCCAGTCATTT--AGGCTCCTGGGAGTTGGGGCCTGGATTCCTCAGGCAGACA-GGGCCAGCAGCCGGGATTAGGGATTTGAGAGACGGGATTGGGAGGGCTTAGCAGCTGCCTGG---GTGGGGCAGGGAGGAGGTCAGACAGAATCTCAGGGTCCCCTGGGTGTCTGGGTAGACAGTGGGGCCTTCGTGAAGAGGAGCGATTTGGGGGAATGTGAATGCAGGTTGAGCTTGAGCCACAGAGTAAGCGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCACCCAGAGGA--CGCTGGTCCTAGGGAGAGCACAGTGGGTAGAGAC-AGGCAGAACATGGAGAAGGCAGAGAACTGGGC-CTGAAGGAAGAGAGGA----ATCTGGGACGAAGCTGGATATTGGGGTCCCAGCTTCTGAA-A-TCTGGGATTGT-GGGGTATGAGTTCAAAGGGTTAC---------------AAACTGTATGGACTTGTTGAAACCAGAAACACAGGGAGGGGAGAGCCGGGTCCTCAGGGAAGCTCTGGGTGGGAAAGGGTCAGGAAGTGGACGATGACAGGGTTGGGTGTCAGATTCTGAGGGGTTTGGGAACCAGGGGCTT-TTGGGGAGATGATGGGTCCTTGAACAGAGCAGGG----ATTTGGAACTGAGACTAAGATGTTAAATGCTAAAGGGGCCTTGA-----GAGGAGGGCAGGAGCGAGGCTTATGGATCTTCGCTCCCGCTGGGATAAATGGGTGGGGTTG-GGGGACCTAGTGATGACAAATACCATCATGATTCTAAACAGCAAGCTCCTCACAAATGGG------GGTTATCATTATTACTGCTGGAGCAAGCTGG---AGGGTATCCGTATGCCAGAGGCAGT--CAG-TGGTGGGCAGGCT-CAGTTGAGAAATCTGGACTCAGTTGAGAAATCAGGTGAGGTACAGAT-GAGGCCAAGTCATGGGATGGCACAAGGACCTCTGGGGTTGTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAACGTGTGGGAAGAGGAGGGAGCAGAGCAGTGGGATCCCAAGATGTC--AAGCCCTG---TGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCTACCCCAGAAGGGGCTGGCGTGGAGG---CT-TTGGGTCTCTACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGGTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47112571 2794 +  51301725 GGGACTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTTCCTTTACCAGTCCCACCTACCTAACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCGGAGAATGCGTGTTAATTCCTCTCCAATCTCTCCCAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTTTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTACTGCACCTGTAGCCACGTGCTCCCTCTTCTGAGGACTGCTCTTTAGATGCCTGCCGCCTGGGCAGGATTCTCACAGCCTTCTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGGGGCTGAGACCCTAATC--ATCTGGGTCTTCAGAGAGGAGGGCACAGGAAGAAGGTTCAGGACCTCTGGGTGTTGACCAGG--GGGAGGGGCTACATATTGCAGATGCTGAGGACCTAAGAGAATCGGCTCTAAGACTCACTgggggtaggggttgggggg--TCCTCGAGTCCCTAGC---ATAAGGAA--GACTCACTGGA--------------GTGGGTACTGGGACATCCCCTCCCACACTGACTTCTGAATTCCCTCCATCCCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGACTGGGGGCCTGGACGCCTGTGTCCTGAGGGTTGAGGGAACTGGGAGAGTGGACTGCTGGGTCCCAGGGAGAAGGAGCTGTGGG------------TCCCAGTTCCCGGATCCTGAGG---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCTAGAGCCTGAGTCCTAGAGAGGTGGGAAGGTCACCAGATTCTTGAGATCTCAAG-GGGCGGAGGCAGCACGGCCAGACCCCAGAG-TTTTTCAAGAGAAGTAGGGTTTCTGGAGCTAAGGGAAG-GAAGAGGCAGCAGACTCAGAGCTCAGAAAGTAGGGTCATGAGGCTCAGGTCTGAGTGTCTGCTGGCCCTTAGTCACCTCCTTTCCCGCCTTTGAGAG-CCACCTGCCAACTA-CACTCTCTGCAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGTAAGgagggcctgggcctggcccagaagGTAGATCCTGcccagaaggagaaggaagaggttgGCCAGTGGCTCACGGTGAGTTGGGGTGGAGAAGAGGAGGTAAACTCTGAGGATCCTGAGCCCTGGGTGTAGGTGGGAACCCTGGCTGATggctttcctcttc-ctctccctcccctagaaTACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAGGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCCA-CACCTTtgggatggggatgggc-tggggatgggctggCCAGCAGGAG--GCCAGTCATTT--AGGCTCCTGGGAGTTGGGGCCTGGATTCCTCAGGCGGACA-GGGCCAGCAGCCGGGATTAGGGATTTGAGAGACAGGATCGGGAGGGCTTAGCAGCTGcctgg---gtggggcagggaggaggtcAGACAAAATCTCAGGGTCCCCTGGGTGTCTGGGTAGACAGTGGGGCCTTCGTGAAGAGGAGTGATTTGGGGGAATGGGAATGCAGGTTGAGCTTGAGCCACAGAGTAAGCGTGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCATCCAGAAGA--CACTGGTCCTAGGGAGAGCACAGTGGGTAGAGAC-AGGCAGAACATGGAGAAGGCAGAGAACTGGGC-CTGAAGGAAGAGAGGA----ATCTGGGACGAAGCTGGATATTAGGGTCCCAGGTTCTGAA-A-TCTGGGATTGT-AGGGTATGAGTTCAAAGGGATAC---------------AAACTGTATGGACTTGTTAAAACCAGaaacacagggaggggagagcTGGGTCCTCAGGGAAGCTGTGGGTGGGAAAGGGTCAGGAAGTGGACGATGACAGGGTTGGGTGTCAGATTCTGAGGGGTTTGGGAACCAGGGGCTT-TTGGGGAGATGATGGGTCCTTGAACAGAGCAGGG----ATTTGGAACTGAGACTAAGATGTTAAATGCCAAAGGGGCCTTGA-----GAGGAGGGCAGGAGCGAGGCTTATGGATCTTTGCTCCTGCTGGGATAaatgggtggggttg-ggggaccTAGTGATGACAAATATCATCATGATTCTAAACAGCAAGCTCCTCACAAATGGG------GGTTATCATTATTACTGCTGGAGCAACCTGG---AGGGTGTCCGTATGCCAGAGGCAGT--CAG-TGGTGGGC--------------------GGGCTCAGTTGAGAAATCAGGTGAGGTGCAGATGGAGGCCAAGTCATGGGATGGCACAAGGACCTCTGGGGTTGTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAACGtgtgggaagaggaaggagcagaGCAGTGGGATCCCAAGATGTC--AAGCCCTG---TGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCCACCCCAGAAGGGGCTGGCGTGGAGG---CT-TTGGGTCtccacaggggtcagggactgaGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGGTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46819762 2810 +  50890351 GGGACTGGTCTCTTGTCAGAT------------AGCAAATGCTTCTTTCCTTTACCAGTCCCACCTACCTAACTATGCTGACTAGGTCCAT-GTCTCTGGGTTTTTACCAGCCGGAGAATACGTGTTAATTCCTCTCCAATCTCTCCCAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTT-CTACTGCACCTGTAGCCACGTGTGCCCTCTTCTGAAGACTGCTCTTTAGATACCTGCCGCCTGGGCAGGATTCTCACAGCCTTCTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTAC-GGGGCTGAGACCCTAATCTTATCTGGGTCTTCAGAGAGGAGGGCACAGGAAGGAGGTTCAGGACCTCTGGGTGTTGACCAGG--GGGAGGGGCTGCATATTGCAGATGCTGAGGACCTAAGAGAATCGGCTCTAAGACTCACTGGGGGTAGGGGTTGGGGGG--TCCTCGAGTCCCTAGC---ATAAGGAA--GACTCACTGGA--------------GTGGGTATTGGGACATCCCCTCCCACACTGACTTCTGAATTCCCTCCGTCCCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTgagggg-ctgggggcctggacgcctgtgtcctgagggttgagggaactgggagagtggactgctgggtcccagggagaaggagctgtggg------------tcCCAGTTCCCGGATCCTGAGG---TCTGACTTTCTTGCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCGTCCAACGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCTAGAGCCTGAGTCCTAGAGAGGTGGGAAGGTCACCAGATTCTTGAGATCTCAAG-GGGCGGAGGCAGCACGGCCAGACCC--GAG-TTTTTCAAGAGAAGTAGGGTTTCTGGAGCTAAGGGAAG-GAAGAGGCAGCGGACTCAGAGCTCAGAAAGTAGGGTCATGAGGCTCAGGTCTGAGTGTCTGCTGTCCCTTAGTCAGCTCCTTTCCCGCCTTTGAGAG-CCCCCTGCCAACTA-CACTCTCTACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCTTACAGTAAGGAGGGCCTGGGCCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAAGAAGAGGTTGGCCAGTGGCTCACGGTGAGTTGGGGT-GAGAAGAGGAGGTGAACTCTGAGGATCCTGAGCCCTGGGTGTAGGCGGGAACCCTGGCTGATGGCTTTCCTCTTC-CTCTCCCTCCCCTAGAATACCATCGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAGGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCCCA-CACCTCtgggatggggatgggcatggggatgggctggTCAGCAGGAG--GCCAGTCATTT--AGGCTCCTGGGAGTTGGGGCCCGGATTCCTCAGGCGGACA-GGGCCAGCAGCCGGGATTAGGGATTTGAGAGACAGGATCGGGAGGGCTTAGCAGCTGCCTGG---GTGGGGCCGGGAGGAGGTCAGACAGCATCTCAGGGTCCCCTGGGTGTCTGGGTAGACAGTGGGGCCTTCGTGAAGAGGAGCGATTTGGGGGAATGTGAATGCAGGTTGAGCTTGAGCCATAGGGTAAGCATGAGACCTGAAGGAC-ACCCATGGCAA---------------GAGGCCTCCTGGCATCCAGAGGA--TGCTGGTCCTAGGGAGAGCACAGTGGGTAGAGAC-AGGCAGAACATGGAGAAGGCAGAGAACTGGGC-CTGAAGGAAGAGAGGA----ATCTGGGACGAAGCTGGATATTGGGGTCCCAGGTTCTGAA-A-TCTGGGATTGT-GGGGTATGAGTTCAAAGGGATAC---------------AGATCGTATGGACTTGTTGAAACCAGAAACACAGGGAGGGGAGAGCCGGGTCCTCAGGGAAGCTGTGGGTGGGAAAGGGTCAGGAAGTGGACGATGACAGGGTTGGGTGTCAGATTCTGAGGGGTTTGGGAATCAGGGGCTT-TTGGGGAGATGATGGGTCCTTGAACAGAGCAGGG----ATTTGGAACTGAGACTAAGATGTTAAATGCTAAAGGAGCCTTGA-----GAGGAGGGCAGGAGCGAGGCTTATGGATCTTTGCTCCCACTGGGATAAATGGGTGGGGTTG-GGGGACCTAGTGATGACAAATATCATCATGATTCTAAACAGCAAGCTCCTCACAAATGGC------GGTTATCATTATTACTGCTGGAGCAAGCTGG---AGGGTATCCGTGTGCCAGAGGCAGT--CAG-TGGTGGGCGGGCT-CAGTTGAGAAATCTGGACTCAGTTGAGAAATCAGGTGAGGTGCAGATGGAGGCCAAGTCATGGGATGGCACAAGGACCTCTGGGGTTGTTTAGAGGTTTCCAAGGACTCCTGGAGCCAGAAACGTGTGGGAAGAGGAGGGAGCAGAGCAGTGGGATCCCAAGATGTC--AAGCCCTG---TGGTCCCCACAGGGCTCAGAGGGTGGGTGGACCCCATACTGCCCCACCCCAGAAGGGGCTGGCGTGGAGG---CT-TTGGGTCTCCACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAG-GAGGGGCC-AAGCAGGTGGTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45395815 2768 +  49145316 GGGGCTGGTCTCTTGTC----------------AGCGGAGGTTTCTTCTCTTTACCATTCCCACCCACCTCACTATGCTGACTAGGTCCCT-GGCTCTGGGTTTGAACCAGCCAGGGAATACATGTTAATTCCTCTCCAATCTCTCCTAGCAGCGTCCGTCTCCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGACAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTA-----ACTTCCCGCTGCACCTGTAGCCACGTGCTCTCGCTTCTGAGGACTGCTCTTTAAAT-CCTGCTGCCTGGGCAGGATTCTCACAGCCTTCTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAGGTACAGCGGCTGAGGCCCTAATC--ATCTGGGTCTTCAGAGAGGAGGGCACAGGAAACAGGCTCAGGATCTCTGGGTGTTGACCAGGGAGAGAGGGGCTACATA-TGCAGGTGCTGAGGACCTAAGAGAATCAGTTCTAAGATAGACTGGGGATAGAGGTGCGGGGG--TCCTCGAGTCCCTAGC---AT-AGGAA--GAATCACTGGA--------------GTGGGTACTGGGGCATCCCCTCCCACACTGACTTCTGAATTCTCTCCATCCCTCAGCTCCATAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGGGGCCTGGACGcctgtgtcctgagggtagagggaactgggagagtggactgctgggtcccagggagaaggagctgtggg------------ccccagttcccaggtactgagg---TCTGACTTTCTTTCTTTT-CCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCATCCAATGAGATCAAGGACAAGAGGCAGCTTATAGACAACCGCAAGCTCATTGAGACGGTAGGAGCCCAGATCCTGAGTCCCAGAGCGG--GGGAGGTCACCTGATTCTTGAGATCCCAAG-GGGTGGAGGCAGAGTGGCCAGACCCCAGAG-GTCCCCAAGAGAAGCAAGGTTCCTGCACCTAAGGGAAGGGAAGAGGCAGCAGACTCAGAGCTCAGAAAGTAGGGTCATGAGGCTCAGGGCTGAGTGTCTGCTGGCCCTTAGTCAGCTCCTTTCCCACCTTCGAGAG-CCCCCTGCCAACTG-CACTCTCTACAGCAAATGGAGCGGTTCAAAGTTGTGGAGCGAGAGACCAAAACCAAAGCTTACAGCAAGGAGGGCCTGGGCCTGGCCCAGAAGGTGGACCCTGCCCAGAAGGAGAAGGAGGAGGTCGGCCAGTGGCTCACGGTGAGTTGGGGCAGAGAAGAGGAGGTGAACTCTGGGGATCCTGAGCCCCGGGCATACCTGGGAACCCTGGCTGATGGCCTTCCTCT----TCTTCCTCTCCTAGAATACCATTGACACGCTCAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAAGGATGTGAGTGAGGGAGACCTGG-CGCCTTTGGGAAGGGGGTGGGGATGGGGACGGGCTGGCCAGCAGGAGGTGCCAGTCATTT--AGGCTCCTGGGAGTTGAATCCTGGATTCCTAAGGTGGACAGGGGCCAGCAGCTGGGATTAGGGATTTGAGAGACACGATCGGGAGGGCTTAGCAGCTGCCTGG---GTGAGGCAGG-AGGAGACCAGACCGAATTTCAGGGTCCCCTGGGTGTCTAGGTAGGCAGCAGGGCCTTGGTGAAGAGGAGCGGTTTGGGGGGAGGTGAATGCAGGTTGAGCTTGGGCCCCAG---AAGTGTGAGACCTGTAGGAC-ACCCATGGCAG---------------GAAGCTTCATGGCACCCAGAGGG--CCCTGGTCCTGGGGAGAGCACAGT---TAGAGACAAGGCAGAATCTGGAGAAAGCAGAGAACCAGGC-CTGAAGGAAGAGAGGA----GTCTGGGACAAAGCTGGATGCTGGGATCCCAGGTTCTAGA-A-TCCAGGATTGT-GGGGTGTGAGTTCAGGGGGATACTTGTTGAAATCGGGGAAACTATAGATACTTGTTGAAACCAGAAAGACAAGGAGGGGAGAGCCAGGTCCTCAGGGAAGCTGTGGGTGGGAGAGGGTCAGGAAGTGGATGATGTCAGGGTTGGGTGTCAGACTCTGAGGGGTTTGGGAACCATGGGCTTGGAGAGGAGTTGTTGGGTCCTTGGACAGAGCAGGG----ATTTGGAACCGAGGCTAAGTTGTTAAATCGTAGAGAGTCCTTGA-----GGGGAGGGCAGGATCGAGGCTTATGAGTCTGGGCTCCCTTGGGGATAAATGGATAGGGTTG-GGAGGCCTAGTGCTGACAGA-ATCATCATTATTCTAAACAGCAAGCTCCTCACAAATGGC------GGTTATCATCATCACTGCTGGGGCAAGCCGG---GGGTGGG--GCATGCCAGAGGTAGTCACAGCCGGTGG------------------------------------------GTGAGGTGCAGGTGGAGGCCAAACCGTAGGATGGCACAGGGACCTCT-GGGTCGTTTAGAGGTTTCCAAGAA---CTGGAGCCAGAAAGGTCTGGGGAGAGGAAG-----GAGCAGTGGGATCCCAAGATGTCAGAAGTCTGAGA-TTGCTCTCACAGGGGACAGAGGGTGGGTGGACCCCATACTGGCCCACCCCAGAAGGGGCTGGAATGGAGG---CT-TTGGGTCTCCACAGGGGTCAGGGACTGAGGACAGGTTCTGTGGGGGCAGAGAGGGGCC-AAGCAGGTGCTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i calJac3.chr22             C 0 M 1562
s mm10.chr7                   3650652 2539 + 145441459 AGGCCTAAGCTC-TGTCAGGTGAGGGAAGAGCAAGTTAGTGTCTCTTCCTTCTACT--CTCCTACTACCCCTGATTCCTATCCACATTCAT-GACT-TGAGTTTGCACCAGCCCAGGAATGGATGTTAAGTCTATCCCAATTGTTCCCAGCAGCGGCCATTTTCAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTA----ATCGACTGTCTACTGTTCATGTGGCTACATGCCCTTCCTTCCGGGAA---TTCTCTGGATATTTGCAATCTTGGCAAGATCCTAACAGTCTTA---CTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAAGGGGTGGAGCAGTTTGAAGATATTTGGCAAAAGGTA-AGGACCTAGGAACCTTA-A--ATTTTGTTGTCTGTAGGGCAAAGAATCAAGAAGAGGTTCAGGGCCTTGGGGTCTTGACCAGG----------------------------------------GAAGCATCTCTAAGATCGATTGTGGGGA-------GGGGG--TCCTAGATTTCCCAGCCGAGGAAGAAA--GAG--ACTGGACCTTTACAGCTATGGCGAGTTCTGGG-CAGCCACTTTCACATTGACTGCTGAATT--CTTCATCCCTCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAAGTGAGGGGGCTGGGGA--TGGACTCTTGTGTCCTATGGGAGGAGGG-ATGGAGACAGTGGACTGCTGGGTCCCAGGGAGAAAAGGTCATTGAGGACCCCCCTCCCCCCAGTTTCCAGGT-CTACAA---CCTAATTATCTTGCTTTT-TCTCCCTTCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCATCAAATGAGATCAAGGACAAAAGGCAGCTTATTGAAAACCGCAAGCTCATTGAGACGGTTAGAAACCAGAGCCTGGGGTTCTTTGGGGTGGGAATATGGTCAGGCTCCTGGGACCCAAAGAAGGTGGAGGTGGAGCAGTCA----CTAGAGAGTCCTCGGGAGGAGTATTGTTTCCACAACTAAGGGAAGGGCAGA--------AATGAGGGCTCAGG------------------CTGTTTCTAGCAT-TGCTGGCTCTTA--TAGCTCCTTTTCCATCTTTGAGCA--CCTCTGCCAACTATTACTCTTCACAGCAAATGGAACGGTTCAAAGTTGTGGAACGAGAGACCAAAACCAAAGCGTATAGCAAGGAGGGTCTGGGTCTGGCTCAGAAGGTGGATCCTGCCCAGAAGGAGAAGGAAGAAGTTGGCCAGTGGCTCACGGTGAGTTGGGACGGAGAAGA--AAGTAAGCACTTGGGCCC---AGACTTAAATATATACCAGGGCCTTGA-GGACAAACCT-CTCTTC-CCTTCTCTTCCCCAGAACACCATTGACACCTTAAATATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCGGTACAGACACGCAAGAAGAAAGGCGACAAGGATGTGAGTGGTGGGGGCACCATCACCCACAGGGTAAGGG------TGGAGGTGGCCT-GTGAACAGAGG--G-----CATCTGGAGGCTCATAGGAGTCTGGTCCTGGAT-----------ACA-----------CCTGGGGCAGAGATTGAAAAGGCAGAACAAGGCAGCTT----AGCTGGCTGAGTTGTGGTATAGGGAGGAAGTGAGAGAGGATATTG---------GGATATTTGGGTAGACAGTGTAGCCATTGT---TAGGGGCAGTTTGGGTGAAGATGGACTTAGGTTCAGCTGGCACCACATA------GTGAGACCTGAAGAAAGGACCAAATTGG---------------GAAGATACACAGCACTCCAAAAATTCCCAGGATCTCAGGAGGG---GGTTGGTATGTCT--------------------CTAAGAACCAGTTGCTGTTGGAAACCTGGAAATGGTTTGGGCCAAAGTCATATGATAGGGTCCCGAATCTTACACC-TTTAGGATTGTAAGGGTGTGAGTTCAAAGGGATGT---------------CGACTCTGTCTCGTTAATGGTGTCA-----CCAGGGAAGGAAGTTCTGA----------------TGGGATGGAAAG--------AAAGAAAGATGTCA-----------------CTGG-----------------------GAGGGAAAAGAGTAGATCCTTGATAAAAGGAGGA----ATTTGGAGCTGGCACTAAGGCATTACGTTGTGAAGGGAATTGGAACCTCGAGAAGAGCAGGAGC------------TCTCTGTGGCTGCCCTGATAAACGG-----------------------------------------------ACAGCCAGTTTCCTTCCCATGGACTCTACCTTTATCACTATCATTACCGTTGC--GCTGAGATAGGATGTCTAT-TTCCGGCAGAGGTCAGAA-TGGTGGG-AGGCC-TGGGTAAGACTT----GCT----------GACAGGTAAG--CCAGGCAGAGGCCAAGTTGTAGGGTAGCGCAGGTA-------------TTACAGGTTTCTAGGGATCTTTAGAGCCAAAAGGGTTTGAGGAGA----------GAGAAATGGATCCTTGAGATGTCAGAAACCTCAGATTTGTCCTCACTGGG-ACAGAGGATGGGCAAACTTCTCACTGGCCCATGTT-AGGAGGGCTGGAGCAGAGGCACCC-TTGGGGTGCCCTAGTGATGGGGGACTGAGGACAGGTTCTGTGGGGGCAG-GA-GGGCT-GGCCAGGTGCTCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i mm10.chr7                 I 117 C 0
s canFam3.chr1               19611768 2368 - 122678785 TGGCCTCATCTCTCATCAGAG------------AGTGAACGCATCTTCGCTTTACCA-TCCCATGTATTC--CTGTTC---CCAGCCCCGTCATGTTTGTGTTTGGAACAGACAGGGAATAAACAT--GTCCCCCTTCCTTGTCTCTCAGCAGCGTCCGTCTCTAAGAGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTACTGGTCTCCCTGCCCACTGCCTGTGTGGCCTCGTGCCCACTATCCTCAGAACTCCCCACTGGGTGCCTGCTGCCTGGGCAAGGTGCTAATAGCCTC--TCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAACAGTTTGAGGATATTTGGCAGAAGGTACAGAGCCTGGGGCCTTAACA--GTCTGGGTCTTAGAGGAGAAGAGCATGGGAA-AAGGCTCAGGGTCTCTGGGTGTAGGCCAGG--GAGAGGGGCTGTGGG--TCTGGTGCTGAGGAC--GGAAGGAGCAGCTCTGAGACAGATGGGGG--------TGGGGGC--ATCCATACTCCTCAGA---GGCTGGAGCTTCACCACTAGA--------------ATGGGCACTAGGATGGCAAGCCCCACACTGACACCTGGGCTCCCTTCATCCCGCAGCTCCACAATGCAGCCAACGCGAACCAGAAAGAAAAGTATGAAGCTGATCTAAAGAAGGAGATTAAGAAGCTTCAAGTGAGGGGCCTAGGGGCCCGGCTTCCTGCATCCTGAGGGCAGAGGGAACAGGGAG-----------------------GAGGGGGCTGGCAG------------CCTTGGTGCCCAGGTCCTGAGGCAATGTGAC--TCTTGCTTTTCCCCATCTGCAGCGGCTGAGGGACCAGATCAAGACATGGGTAGCATCCAACGAGATCAAGGACAAGAGGCAGCTCATAGACAACCGCAAACTCATTGAGACGGTAGGAGCTCAGAGCCTG-GTACCTGAGAGGTGGG-AGGTGGCCGGACTCCCTGGG-CCCAAG----------------------------AAG---TCTCTGGAAGAGGATGGTTTCTCCAGCAAGGTTAAGGGGAGAGGTGATGGGCTGGGA------------------------------------------------------------------------------TCTCCTGCCAACTG-CGCTCTCCACAGCAAATGGAACGGTTCAAAGTTGTGGAGCGAGAGACCAAGACTAAAGCCTACAGCAAGGAGGGCCTGGGCCTGGCGCAGAAGGTGGACCCTGCCCAGAAGGAGAAGGAGGAGGTCGGCCAGTGGCTCACAGTGAGTCAGGAAAGAGAGGAGGAGGTGACCTTTGGGG-CCCTAACCTCCAGGCATCCACGGAGACCT--GCTGACCAGCTGCCTTTCCACTCCCTCTCCCCCAGAACACCATTGACACCCTGAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAGTCACTGTCTGTGCAGACGCGCAAGAAGAAAGGTGACAAGGATGTGAGTAGGGGGGACACTG-CACCCAGGGGA------------CAGAGATGAGCTGGCGAGTGGGAG--G-----CATGT--GGCCCGTTGGG------------------------------GG----------------------------------------------TAGCACCTGTCT-----GTGAGCCAG------------------TGTCAGGGCTCCA-----GCCTTGGTCAGCAGTGGCACCATGGAAAGGGGGAGTGGTTTGGGGGAACATGC---TGGGTTCTGCTGGGGTTGCAGACTAG--GTGAGAGCAGATAGCC-ATACAGGGTGGAGAAGTCTGAGAGCTGAAGCCTCCTGGCTCCGAGAAGG--CTCAGGTCCTGAGG------CAGTAAGGAGAGGC-AAGCCTCATTTGG-----GCTGAGAA--GAGC-C-------------------ATCTAGGGCAGAGCCAGCT-CTAGGTTCCCAGATTCCAGA-ACTCCAGGGCTGA-AGGGTGTGGATTCAGGGGGATGC---------------AAACGACATGTACTTGATGG---------CAGAGGCAGCGGAGAGCTGGGTCCAGGGGCAGG--GGGCATGGGAGAGG----------------TGCCCAATCTGGGTGTCAGACTCCGAGGAGTTTGGGAAGCTGGAGCCA----------CAACAGGTCCTTGTGGAAAGGATGGGGATATTTAGAACTGAAG-----------------GAGGGGCAGGTGG-----CTGGAGAGCCCGAGCCAAGCTACTGAATCTGGACCCCT----------AGGGGTGGGGATT----------GTGAGGACAAAGATGACGGTGGTCATAAACAGCAAGCTTGCTGCAAACAGG------CATCATCAT--TTGCCGTTAGAGCAAGATGG---GG-------------------------CGG-GGTGGGGTAGGCTGCAGTTGTGAGATCTGGGCT----------GTC--GGGAGCTGCAGG-GAGGGCCACAGTGTAGGA-GGCATGGGGCTTTCT-GGTCTGTTGGGAGGTTTCCAGGGATGTCTGG------------GTGG---------------GAGCTGAGGGTCCTTGAGGGGTC--------------------------------GGGGCGGGCAGACTCCACACTGCCCGTGCCA-GGAGGGGCTGGAGTGGAGC---CTCCTGCATCTCTGCAGGGGTCGGGGACTGAGGACGGGTTCTGCGGGGGCAG-GAGGGGCCTGGGCAGGTGCCCTGCAGCCCCTGAGCCTGGCCCTGGGCTC
i canFam3.chr1              C 0 C 0

a score=789135.000000
s hg38.chr19_GL949751v2_alt    120438 193 +   1002683 GCCAGCAGAAGCAGGACCGGATTGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTCGTTGACGCCATCCGCAAGATCAAGGACGACGTTGAGTACTATGTTGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
s panTro4.chr19              59054403 193 +  63644993 GCCAGCAGAAGCAGGACCGGATTGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTCGTTGACGCCATCCGCAAGATCAAGGACGACGTTGAGTACTATGTTGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55930651 193 +  60714840 GCCAGCAGAAGCAGGACCGGATCGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTATCACGTGCGCATGTTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTCGTTGATGCCATCCGCAAGATCAAGGACGACGGTGAGTACTATGTTGACTCATCCCAGGACCCTGACTTCGAGGAGAACGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102696329 193 - 106955855 GCCAGCAGAAGCAGGACCGGATCGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTCGTTGATGCTATCCGCAAGATCAAGGACGACGTCGAGTACTATGTCGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59984383 193 +  64156825 GCCAGCAGAAGCAGGACCGGATCGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTTGTTGATGCCATCCGCAAGATCAAGGATGACGTTGAGTACTATGTCGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55009098 193 +  59248254 GCCAGCAGAAGCAGGACCGGATCGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTTGTTGATGCCATCCGCAAGATCAAGGATGACGTTGAGTACTATGTCGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47115365 193 +  51301725 GCCAGCAGAAGCAGGACCGGATCGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTTGTTGATGCCATCCGCAAGATCAAGGACGACGTTGAGTACTATGTCGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46822572 193 +  50890351 GCCAGCAGAAGCAGGACCGGATCGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATCCTTGTTGATGCCATCCGCAAGATCAAGGACGACGTTGAGTACTATGTCGACTCATCCCAGGACCCCGACTTCGAGGAGAACGA
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3653191 193 + 145441459 GCCAGCAGAAGCAGGACCGGATTGAGGGCTTGAAGCGGCATATCGAGAAGCACCGCTACCATGTTCGTATGCTGGAGACCATCCTGCGAATGCTGGACAATGACTCCATCCTGGTTGATGCCATCCGCAAGATCAAGGATGATGTGGAGTACTACGTTGACTCATCCCAGGACCCCGACTTTGAAGAGAACGA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19614136 193 - 122678785 GCCAGCAGAAGCAGGACCGGATTGAGGGCCTGAAGCGGCACATCGAGAAGCACCGCTACCACGTGCGCATGCTGGAGACCATCCTGCGCATGCTGGACAACGACTCTATCCTTGTTGATGCCATTCGCAAGATCAAGGATGACGTTGAGTACTATGTCGACTCGTCCCAGGACCCTGACTTCGAGGAGAACGA
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45398583 1562 +  49145316 M

a score=3643538.000000
s hg38.chr19_GL949751v2_alt    120631 1023 +   1002683 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGCCCAGAATGGGC--TGTGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCTCCCAGCCACAGCCACATGGAGGATGAGATCTTCAAccagtccagcagcacgcccacctcaaccacctccagctctcccatcccgcccagcccagccAACTGTACCACGGTGAGGCCCCACGGGACACTAGTACCTTGTGTTTCCAGCAGGGCAGGACTCGAGGAGACAAATCTGGGTCACTCCAAAGTGGCTATGGGAGCGTAATTGAGGAAACACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACACGCTAAGGTCCTATATCTGGGTCCCTAAAGGACATAAAGAGCAATAGGGTGCATCCCGCGCCAGTTTAGGTCCTGGAT-CTGGGAAGTGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGCTTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAAAACAAGAAGACTGGAGAGCCTGAATTGAGATGGTTTCTCCAGGCAGATTAAGGACAGCC--ATTTGACCAGCTCTGGGGCCGCAATGGCAGTCAATTGGGCCCAGGT-----------------------CCCCGGGGCATTCAGAGATTGGCGGTTCTCCATCAGAGCCCCAGAGGTCACACAG-GTTTCTA-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGCCTGGACCGGGTGGGCACGCCATTCACTCCTCTGTTGCTTCCCAAAGGCATCTTGAGGCCTGAGCGCCGGCCACTGTGCTGGGCTGGTGGACACAGGTGGCTCAGAAATCAGTGCTGCCCTGAgggcaggtgggcag
s panTro4.chr19              59054596 1023 +  63644993 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGCCCAGAGTGGGC--TGTGTGAGCCGGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACGCCCACCTCAACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTGTACCACGGTGAGGCCCCACGGGACACTAGTACCTTGTGTTTCCAGCAGGGCAGGACTCGAGGAGACAAATCTGGGTCACTCCAAAGTGGCTATGGGAGCGTAATTGAGGAAACACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACATGCTAAGGTCCTATATCTGGGTCCCTAAAGGACATAAAGAGCAATAGGGTGCATCCCGCGCCAGTTTAGGTCCTGGAT-CTGGGAGGTGGGAGGGGCCGGTGCCTGGGCTGCCTGAAGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGCTTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAAAACAAGAAGACTGGAGAGCCTGAATTGAGATGGTTTCTCCAGGCAGATTAAGGACAGCC--ATTTGACCAGCTCTGGGGCCTCAATGGCAGTCAATTGGGCCCAGGT-----------------------CCCCGGGACATTCAGAGATTGGCGGTTCTCCATCAGAGCCCCAGAGGTCACACAG-GTTTCTA-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGCCTGGACCGGGTGGGCATGCCATTCACTCCTCTGTTGCTTCCCAAAGGCATCTTGAGGCCTGAGCGCCGGCCACTGTGCTGGGCTGGTGGACACAGGTGGCTCAGAAATCAGTGCTGCCCTGAGGGCAGGTGGGCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55930844 1021 +  60714840 GTTTCTCTATGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGCCCAGAGTGGGC--TGTGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACGCCCACCTCGACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTGTACCACGGTGAGGACCCACGGGGCACTAGTACCTTGTGTTTCCAGCAGGGCAGGACTCGAGGAGACAAATCTGGGTCACTCCAAAGTGGCCAGGGGAGAGTAATTGAGGAA--ACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACACCCTAAGGTCCTACATCTGGGTCCCTAAAGGACACAAAGAGTAATAGGGTGCATTCCGCGCCAGTTTAGGTCCTGGAT-CTGGGAGGTGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGCTTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAGAACAAGAACATTGGAGAGCCTGAATTTAGGTGGTTTCTCCAGGCAGATTAAGGACAGCC--ATTTGACCAGTTCTGGGGCCACAATGACAGTCAATTGGGCCCAGTT-----------------------CCCCGGGACATTCAGAGATTGGCGGTTCTCCATCAGAGCCCCAGAGGTCACACAG-GTTTCTA-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGCCTGGAATGGGTGGGCATGCCATTCACTTATTTATTGGTTCCCAAAGGCATATTGAGGCCTGATCGCTGGCCACTGTGCTGGGCTGGTGGACTTTTTTGGGTCAGAAATCAGTGCTGCCCTGAGggcaggtgggcag
i ponAbe2.chr19             C 0 I 502
s nomLeu3.chr10             102696522 1023 - 106955855 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGCCCAGAGTGGGC--TGTGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCGCCGAGCCACAGCCACATGGAGGATGAGATCTTCAAccagtccagcagcacgcccacctcgaccacctccagctctcccatcccgcccagcccagccAACTGTACCACGGTGAGGCCCCACGGTGCACTAGTACCTTGTGTTTCCAGCAGGGCAGGACTCGAGGAGACAAATCTGGGTCACTCCAAAGTGGCTAGGGGAGAGTAATTGAGGAAACACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACACCCTAAGGTCCTACACCTGGGTCCCTAAAGGACATAAAGAGTAATAGGGTGCATCCCGTGCCAGTTGAGGCCCTGGAT-CTGGGAGGTGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTGGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGCTTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAACACAAGAACATTGGAGAGCCTGAGTTTGGGTGGTTTCTCCAGGCAGATTAAGGACAGCC--GTTTGACCAGCTCTGGGGCTGCAATGGCAGTCAATGGGGCCTAGGT-----------------------CCCCGGGACATTCAGAGATTGGCGGTTCTCCATCAGAGCCCCAGAGGTCACACAG-GTTTCTG-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGTCTGGAATGGGTGGGCATGCCATTCACTTATTTATTGGTTCCCAAAGGCATATTGAGGCCTGAGTGCCGGCCACTGTGCTGGGCTGGTGGACACAGGTGGGTCAGAAATCAGTGCTGCCCTGAgggcaggtgggcag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59984576 1010 +  64156825 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGTCCAGAGTGGGC----TGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACACCCACCTCGACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTGTACCACGGTGAGGCCCCACGGGGCACGAGTACCTTGTGTTTCCAGCAGGGCTGGACTCGAGGAGGCAAATCTGGGTCACTCCAAAGTGGCTAGGGGAGAGTAATTGAGGAAACACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACACCCTAAGATCCTATATCTGGGTCCCTAAAGAACATAAAGAGTAATAGGGTGTATCCTGGGCCAGTTTAGGTCCTGGAT-CTGGGAGATGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGATTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAAAACAAGAACATTGGAGAGCCTGAATTTAGGTGGTTTCTCCAGGCAGATTAAGGACAGCT--GTTTGACCAGCTCTGGGGCTGCAGTGGCAGTCAGTTGGGCCCAGGG------------------------CCCGGGACATTCAGAGATTGGCGGTTCTCTGTCAGACCCCCAGAGGTCACACAG-GTTTCTG-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGTCTGGAATGGATGGGCATGTTGGGCAATA----------TCCCAAAGGCACATTGAGACCTGAGTGCTGGCCACTGTGCTGGGCTGGTGGACACAGGTGGGTCAGAAATCAGTGCTGCCCTGAGGGCAGGTGGGCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55009291 1010 +  59248254 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGTCCAGAGTGGGC----TGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAAccagtccagcagcacacccacctcgaccacctccagctctcccatcccgcccagcccagccAACTGTACCACGGTGAGGCCCCACGGGGCACGAGTACCTTGTGTTTCCAGCAGGGCTGGACTCGAGGAGGCAAATCTGGGTCACTCCAAAGTGGCTAGGGGAGAGTAATTGAGGAAACACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACACCCTAAGATCCTATATCTGGGTCCCTAAAGAACATAAAGAGTAATAGGGTGTATCCTGGGCCAGTTTAGGTCCTGGAT-CTGGGAGATGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGATTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAAAACAAGAACATTGGAGAGCCTGAATTTAGGTGGTTTCTCCAGGCAGATTAAGGACAGCT--GTTTGACCAGCTCTGGGGCTGCAGTGGCAGTCAGTTGGGCCCAGGG------------------------CCCGGGACATTCAGAGATTGGCGGTTCTCTGTCAGACCCCCAGAGGTCACACAG-GTTTCTG-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGTCTGGAATGGATGGGCATGTTGGGCAATA----------TCCCAAAGGCACATTGAGACCTGAGTGCTGGCCACTGTGCTGGGCTGGTGGACACAGGTGGGTCAGAAATCAGTGCTGCCCTGAgggcaggtgggcag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47115558 1010 +  51301725 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGCCCAGAGTGGGC----TGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTccccccccAGCCACAGCCACATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACACCCACCTCGACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTGTACCACGGTGAGGCCCCACGGGGCACGAGTACCTTGTGTTTCCAGCAGGGCTGGACTCGGGGAGGCAAATCTGGGTCACTCCAAAGTGGCTAGGGGAGAGTAATTGAGGAAACACAGATCTAGGTATCCAGGGTCTAGGCTCTT-GGAGCACACCCTAAAATCCTACATCTGGGTCCCTAACGAACATAAAGAGTAATAGAGTGTATCCTGGGCCAGTTTAGGTCCTGGAT-CTGGGAGATGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGATTCCCTGTGGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAAAACAAGAACATTGGAGAGCCTGAATTTAGGTGGTTTCTCCAGGCAGATTAAGGACAGCC--GTTTGACCAGCTCTGGGGCTGCAGTGGCAGtcagctgggcccaggg------------------------cccgGGACATTCAGAGATTGGCGGTTCTCTGTCAGACCCCCAGAGGTCACACAG-GTTTCTG-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGTCTGGAATGGATGGGCATGTTGGGCAATA----------TCCCAAAGGCACATTGAGACCTGAGTGCTGGCCACTGTGCTGGGCTGGTGGACACAGGTGGGTCAGAAATCAGTGCTGCCCTGAGGGCAGATGGGCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46822765 1009 +  50890351 GTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGA---TCGTGGCACAGGA-AGTGAGGGCCCAGAGTGGGC----TGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAAccagtccagcagcacacccacctcgaccacctccagctctcccatcccgcccagcccagccAACTGTACCACGGTGAGGCCCCACGGGGCACGA-TACCTTGTGTTTCCAGCAGGGCTGGACTCGAGGAGGCAAATCTGGGTCACTCCAAAGTGGCTAGGGGAGAGTAATTGAGGAAACACAGATCTTGGTATCCAGGGTCTAGGCTCTT-GGAGCACACCCTAAGATCCTACATCTGGGTCCCTAAAGAACATAAAGAGTAATAGGGTGTATCTTGGGCCAGTTTAGGTCCTGGAT-CTGGGAGATGGGAGGGGCCGGTGCCTGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTTGGATTCCCTGTTGAGAGCAGGTTCCCAGATCCTTAAGAGGCTGGTGGGTCAGTGCTGGCTCCCAGAAAACAAGAACATTGGAGAGCCTGAATTTAGGTGGTTTCTCCAGGCAGATTAAGGACAGCC--GTTTGACCAGCTCTGGGGCTGCAGTGGCAGTCAGTTGGGCCCAGGG------------------------CCCGGGACATTCAGAGATTGGCGGTTCTCTGTCAGACCCCCAGCGGTCACACAG-GTTTCTG-TTCTGCCTCCCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAGGTGGGTGTGAGTCTGGAATGGATGGGTGTGTTGGGCAATA----------TCCCAAAGGCACATTGAGACCTGAGTGCTGGCCACTGTGCTGGGCTGGTGGACACAGGTGGGTCAGAAATCAGTGCTGCCCTGAgggcaggtgggcag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45400145 1019 +  49145316 GTTTCTCTATGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGTGGTGA---TGGTGGCACAGGA-AGTGAGGGCCCAGAGCAGGC--TGTGTGAGCCAGCTAAGCATGCCCTCCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACACCCACCTCGACCACCTCCAGCTCTCCCATCCCTCCCAGCCCAGCCAACTGTACCACGGTGAGGCCCCAGAGCGCACTAGTACCTCGTGTTTCTAGCAGGGCAGGACTTGAGGAG--AAATCTGGGTTTCTCCAAAGTGACCAGGGGAGAGTAGTTGAGGAAACACAGATCAAGGTAGCCAGGGTCTAGGCTCTT-GGAGCACACGCCAGGGTCCTACATCTGGGTCCCTCAAGGACACAAAGAATAATAGGGTCCATCCTGGGCCAGTTTAAGCCCTGGAT-GTGGGAGGCGGCAGGGGCCAGTGCCGGGGCTGCCTGAGGAGGCTGGGTAGCTGG-----CCACCTTGGGCAGGGATCCAAGGGTGGGATTCCCTGTGGACAGCAGGTTCCCAGATCCTTAGGAGGCTGGTGGCTCAGTGCTGGCTCCCAGAAAAC---AACATTGGAGAGCCTGAATT-GGGTGGTTTCTCCAGGCAGATTAAGGACAGCCATGTTTGCCCAGCTCTTGGGCTGCAGTGGCAGTCACCTGGGCCGAGGT-----------------------CCCCGGGACATTGAGAGATGAGTATTTCTCTGTCAGACCCCCAGATGTCATGCAG-GTTTCTA-TTCCACCTTCCCTCCCTCAGGAAAACTCTGAAGATGACAAGAAGAGGGGGCGTTCCACAGATAGTGAAGTCAGCCAGGTGGGTGTGAGCCTGGAATGGACGGGCATGCCATTCACTTATTTATTGGTTCCCAAAGGCATACTGAGGCCCGAGTGCTGGCCCCTGGGCTGGGCTCGTGGACACAGGTGGGCCAGAAAGCAGTGCTGCCCCAAGGGCAGGTGGGCAG
i calJac3.chr22             M 1562 C 0
s mm10.chr7                   3653384  951 + 145441459 ATTCCTCTATGACGACCTGGACCTCGAGGACATTCGTGAGGCCCTGG-GCTGACCTTCATGGCACAGAG-GGTGAGGGC----AGGAGGC-ATGGCTGTACCAGCTAAGCATGCTGCTCCCCTACCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGACGAGATCTTCAACCAGTCTAGCAGTACACCCACCTCAACAACCTCCAGCTCTCCCATCCCACCCAGCCCAGCAAACTGCACTACGGTAAGTGTCCAAGGT--------------TATTAATAAGAGGGTGGTCATGGAGGAGTCAAA---AGCCTAGTCT----TGCCTTAGAGAGGGCAGCTCAGGAAGTG-AGCTCTAGGCTT------TTTGTGCTCTGAGGAACGGATATAAAAA------ACCTGGGTTTC---------CACTCAGTTTTAGGGTGCACA-----------TGGGTCTTTGGTGGTGGTAGTCAGGAGGAGTTGGGGTGTGGAAAG-CTGAGGA-GCTGAGCAGCTGGGTGTCTCCCTTCTGACAGGGATCC-GGGGCCAAAGTCTATAAGGAAAGAAG--TCCTGGGTATGTCTCAGGATGG-GAGTGAGTGCTGACTCTCAGATT-----------------------TTTAGGTG--TTAACCAA--AACTTCAGGCTGAGT--ATTGGAGCAGCTCTGGAGC-ACAGGGCTACTCAGATGGGTCTATGAGAGACTGAGAGTAGTAAGGGCCCTCCTGTGTCCTTAAAGGATTGCC--CTCTGTTTTGGGACCCTGGAGGTCACAGAGTTTTTTTA-CTTCACTTCCCCTGCCTCAGGAAAACTCTGAAGATGATAAGAAGAGAGGCCGATCTACAGATAGTGAAGTCAGCCAGGTGGGTCCAAGTCTAAATCTGATGGTT-TGTAACTTGTTTATTGCGTGGTCTCCAAAGTTAC--TGAAGCTGGAGGGTTGGCCACGATGCTGGGCTCTTGGG-ACAGGTGTGCCAGAAA-CAGTGCTACTCTGAGGGTAGG-------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19614329  738 - 122678785 GTTCCTCTATGACGATCTGGACCTCGAGGACATTCGTGAGGCCC-GGGGTTGGCC-TACGGGCATGGGGCAGTGAGGGC-CAGGTGGGACGGTGCCCGAGCCTGTTCAGCATGCCCCTCCCTGCTCCCAACAGCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGTCATATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACACCCACCTCGACCACCTCCAGCTCTCCCATCCCACCCAGCCCGGCCAACTGCACCACGGT-------------------------------------------------GAGGAGGCA--------------------GCCCAGGGGAGGGGAACCAAGGAAGTG-GGGTCTTGGTGTCACGGG---------TT-GGAGC-------------------------------------------------------------------------------AT--------GCGGCAGAGGCCAGGCAGTGGG---------------GGGTGGCTCA-------------GGCAGGGATCC-AGGACTGGATTCCCTGAGGAGAGCAGGCTGCCAGGCCTGTGAGACGCTGGCAGG-GGGTGCTGGCTCCCAGGAGACAAGGACCCTGGG-------------------TCCCCCGATGAGGTTAAGGGCATAG--GTC---------------CCGCAGCAGC------------------------------------------CCTGGGAGCTTCAGAGATTGGAG--TCTCTGTTGGGGCCCTAGGGGTCACACAG-GTTTCCGACTGCTCCTCTCTCACTTCAGGAAAACTCTGAAGATGACAAGAAGAGAGGACGCTCAACAGATAGCGAAGTCAGCCAGGTAGGTGTGA------------CGGGCACATCAGTCTGCCATTGG-----CTCCCAGGGCTCACAAAGGCCTGAGTGCACCCCA---------------------AGGAAGGCCAGTA------GCCTTACTTAGGGCAGGTGTGGAG
i canFam3.chr1              C 0 C 0

a score=613169.000000
s hg38.chr19_GL949751v2_alt    121654 227 +   1002683 -ggcaagtggacaggtgactggtgCTGTGGTCAAGGGGGTAGCACACAGGTCACCCTTGGCCTGGCC-----AGGCAGTCAGGAGATGCTGCTGTGGAG-------TGCCCTGGGCTTCACAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGTGGCAGCCAGTAACATGGGCAAGTTGTGACAGAAAGTTT-----------------------------------------------------------------------------------------------GGAAGTGAGGAGAGATGAGTCTGGCCAGGTCTGCAGGGCCA-GGGCCCAAC------
s panTro4.chr19              59055619 226 +  63644993 -GGCAAGTGGACAGGTGACTGGTGCTGTGGTCAAGGGGGTAG--CACAGGTCACCCTTGGCCTGGCC-----AGGCAGTCAGGAGATGCTGCTGTGGAG-------TGCCCTGGGCTTCACAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGTGGCAGCCAGTAACATGGGCAAGTTGTGACAGAAAGCTT-----------------------------------------------------------------------------------------------GGAAGTGTGGAGAGATGAGTCTGGCCAGGTCTGCAGGGCCAGGGGCCCAAC------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55932367 226 +  60714840 -GGCAGGTGGGCAGGGGACTGGTGCTGTGGTCAAGGGGGTAG--CGCAGGTCACTCTCGGCCTGGCC-----AGGCAGTCAGGAGATGCTGCTGTGGAG-------TGCCCTGGGCTTCACAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGTGGCAGCCAGTAACATGGGCAAGTTGTGACAGAAAGCTT-----------------------------------------------------------------------------------------------GGAAGTGGGGAGAGATGAGTCTGGCCAGGTCTGCAGGGCCAGGGGCCCAAC------
i ponAbe2.chr19             I 502 C 0
s nomLeu3.chr10             102697545 226 - 106955855 -ggcaagtggacaggtgactggtgCTGTGGTCAAGGGGGTAG--CACAGGTCACCCTCGGCCTGGCC-----AGGCAGTCAGGAGAGGCTGCTGTGGAG-------TGCCCTGGGCCTCAGAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGTGGCAGCCAGTAACATGGGCAAGTTGTGACAGAAAGCTT-----------------------------------------------------------------------------------------------GGAAGTGTGGAGAGGTGAGTCTGGCCAGGTCTGCAGGGCCAGGGGCCCAAC------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59985586 224 +  64156825 -GGCAAGTGGACAGGTGACTGGTGCTGTGGTCAAGGGGGTGG--CACAGGTCACCCCCAGCCTGGCC-----AGGCAGTCAGGAGATGCTGCTGCGGAG-------TGCCCTGGGCTTGAGAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGCGGCAGCCAGTAACAAGGGGAAGTTGTGACAGAAAGCCT-----------------------------------------------------------------------------------------------GGAAGTGTGGAGAGATGG--CTGGCCTGGTGTGCAGGGCCAGGGCTCCAAC------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55010301 224 +  59248254 -ggcaagtggacaggtgactggtgCTGTGGTCAAGGGGGTGG--CACAGGTCACCCCCAGCCTGGCC-----AGGCAGTCAGGAGATGCTGCTGCGGAG-------TGCCCTGGGCTTGAGAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGCGGCAGCCAGTAACAAGGGGAAGTTGTGACAGAAAGCCT-----------------------------------------------------------------------------------------------GGAAGTGTGGAGAGATGG--CTGGCCAGGTGTGCAGGGCCAGGGCTCCAAC------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47116568 224 +  51301725 -GGCAAGTGGACAGGTGACTGGTGCTGTGGTCAAGGGGGTGG--CACAGGTCACCCCCAGCCTGGCC-----AGGCAGTCAGGAGATGCTGCTGTGGAG-------TGCCCTGGGCTTGAGAGTCAGGTGA--GTTTGCTTGGCAGGGAGAGGCGGCAGCCAGTAACAAGGGGAAGTTGTGACAGAAAGCCT-----------------------------------------------------------------------------------------------GGAAGTGTGGAGAGATGG--CTGGCCAGGTGTGCAGGGCCAGGGGTCCAAC------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46823774 224 +  50890351 -ggcaagtggacaggtgactggtgCTGTGGTCAAGGGGGTGG--CACAGGTCACCCCCAGCCTGGCC-----AGGCAGTCAGGAGATGCTACTGTGGAG-------TCCCCTGGGCTTGAGAGTCAGGTGA--GTTTGCCTGGCAGGGAGAGGCGGCAGCCAGTAACAAGGGGAAGTTGTGACAGAAAGCCT-----------------------------------------------------------------------------------------------AGAAGTGTGGAGAGATGG--CTGGCCAGGTGTGCAGGGCCAGGGGTCCAAC------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45401164 309 +  49145316 --GCAAGTGGACAGGTGACTGGTGCTGT-------GGAGTAG--CACAGGGCACCTCCAGCCCGGCC-----AGGCAGTCAGGAGATGCTGCTGCAGAG-------GGCCCTGGTTTTCAGAGTCAGGT----GTTTGCCTGGCAGGGAGAGGCAGAAG-CAGTAACACAGGCAGGTTG-GACAGAAAGCTCAGGAGTGTGGAGAGATGAGGGAGTGCGGGGAGACGCAGAGGAGCGCGGGGAGACGGGGGGGCGGCGGGGGGAGACGAGGTAGTGTGGAGAGAGGAGGAAGTGTGGAGAGATGAGGTGGGTCAGGTCTGTGGGGCCAGGGGCCCAAC------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3654335 120 + 145441459 ------GT-----GATGACTGGTGGTGTGGTT---GAGGTGG-----------CCTGTTGTCTGGCTTATAGAGGAAGAC--TAGGTGGTACTGTGG-------------------------------------------------------------GCAGGTCACACAGGGAA-CTGTGGCAAGAAGTTA-----------------------------------------------------------------------------------------------GGAAGTAT-GAGAGGTGG---------------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19615067 215 - 122678785 GGCCAGGCAAGCAGGTGGCTGGTGCTGTGGTTGAGTGTGTGG--CATGGAGTA---GTGGCCTGGCCT----GGGTGGTCAGGAGACATTGCTCCAGAGAGACCCCTGCCCGTGACGTGGGGGGAAGACTATGGTTTACCAGGTGGGGAGAAGGGGGCG---------------------GGCAGACAGGTG-----------------------------------------------------------------------------------------------GGTGGTGTCCAAAGATGA--CCCACCTGGCT--CAGGCCGAGGGTCCCGCCCCCCAC
i canFam3.chr1              C 0 I 99

a score=285356.000000
s hg38.chr19_GL949751v2_alt    121881 91 +   1002683 TGTGAGCACAGGGACTGGGACTGTCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGAGTCCAATAAGCCTAGGAAGCGAT
s panTro4.chr19              59055845 91 +  63644993 TGTGAGCGCAGGGACTGGGACTGTCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGAGTCAAATAAGCCTAGGAAGCGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55932593 91 +  60714840 TGTGAGCACAGGGACTGGGACTGTCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGAGTCAAATAAGCCTAGGAAGTGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102697771 91 - 106955855 TCTGAGCACAGGGACTGGGACTGTCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGAGTCAAATAAGCCTAGGAAGTGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59985810 91 +  64156825 TGTGAGCACAGGGACTGGGACTGTCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGAGCCAAACAAGCCTAGGAAGTGAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55010525 91 +  59248254 TGTGAGCACAGGGACTGGGACTGTCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGAGCCAAACAAGCCTAGGAAGTGAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47116792 91 +  51301725 TGTGAGCACAGGGACTGGGACTGTCAGGCTGAGCGGCTCAGGCTTTGTGGACCTGAGTGGCCTCCAGATCCAAACAAGCCTAGGAAGTGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46823998 90 +  50890351 TGTGAGCACAGGGACTGGGACTGTGAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGCGGCCTCCAGAGCCAAACAAG-CTAGGAAGTGAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45401473 91 +  49145316 TATGAGCACAGGGACTGGAATTATCAGGCTGAGGGGCTCAGGCTTTGTGGACCTGAGCAGCTTCTACTGCCAAACAAGCTTGGGAAGTGAT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3654455 57 + 145441459 -------------------GCTGTTGGACTGAG-------GACTCTTTGGTC--------TCTTGAGGACCCAAATAGCCTGAGAAGTGAT
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19615282 99 - 122678785 I

a score=1903203.000000
s hg38.chr19_GL949751v2_alt    121972 636 +   1002683 GGG-----------GCCTTTGCTGTGCTGATAATACACACTGCAAATTTCTGAGAGGAGACGGTGGCGGGCAGTGCTTCT----------------------------TCAACTCCTTTAACATCTCCCAGGACAGGAGCACGCTTTCGGAAACGCTGCTACAGAACAATGTTAGGCAGGAGCAG---CATGGGCCTGAGGCCCCTCTGTGGGCTAACGGGATGGATGGTTCCAAG-GGGACACCCTGAGTGGGCATTGAGGAGGCTGGTGTGGAGACTAAGGGGACCCGCAGGTAGTAGTGAGGGCGGGCAACAGGGCCAGGAGGTGATGAGGAGAGACACTGAGGCAGGTACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCCCCC--ACTGCCAAGCAGCGATGCCCAGGAGAGAAGTGGGTAGTCAGTCCTGTTGGGCGCTTGGTAAGCGCAAGGTGCCTGTGGGGTGGCTGGAAAGAAGCCCAGGAGGTGGTTAGGCTCAGCAGCCGGAG-TGCTGTCCACAGATTGCCTGCGGTAGGGATACCATGA------GCACATTTACCCTCCCACCACTTTCTGGAGTGCTG--GTAACTTCCAGCCCTGTGAGTAGCTTCTGTGACCCTTCAGGTGACA-TTCAGAATTA-CTATCCAATTTCCAGCTG-------------------------------TTTTTCCTTCTAC
s panTro4.chr19              59055936 636 +  63644993 GGG-----------GCCTTTGCTGTGCTGATAATACACACTGCAAATTTCTGAGAGGAGACGGTGGCGGGCAGTGCTTCT----------------------------TCAACTCCTTTAACATCTCCCAGGACAGGAGCACGCTTTCGGAAACGCTGCTACAGAACAATGTTAGGCAGGAGCAG---CATGGGCCTGAGGCCCCTCTGTGGGCTAACGGGATGGATGGTTCCAAG-GGGACACCCTGAGTGGGCATTGAGGAGGCTGGTGTGGAGACTAAGGGGACCCGCGGGTAGTAGTGAGGGCGGGCAGCAGGGCCAGGAGGTGATGAGGAGAGACACTGAGGTAGGTACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCCCCC--ACTGCCAAGCAGCGATGCCCAGGAGAGAAGTGGGTAGTCAGTCCTGTTGGGCGCTTGGTAAGCGCAAGGTGCCTGTGGGGTGGCTGGAAAGAAGCCCAGGAGGTGGTTAGGCTCAGCAGCCCGAG-TGCTGTCCGCAGATTGCCTGCGGTAGGGATACCATGA------GCACATTTACCCTCCCACCACTTTCTGGAGTGCTG--GTAACTTCCAGCCCTGTGAGTAGCTTCTGTGACCCTTCAGGTGACA-TTCAGAATTA-CTATCCAATTTCCAGCTG-------------------------------TTTTTCCTTCTAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55932684 633 +  60714840 GGG-----------GCCTTTGCTGTGCTGATAACACACACTGCAAGTTTCTGAGAGG-GACGGTGGCGGGCAGTGCTTCT----------------------------CCAACTCCTTTAACATCTCCCGGGACAGGAGCACGCTTTCGGAAACGCTGCTACAGAAGCATGTTAGGCAGGAGCAG---CATGGGCCTGAGGCCCCTCTGTGGGCTAATGGGATGGATGGTTCCAAG-GGGACACCCTGAGTGGGCATTGAGGAGGCTGTTGTGGAGACTGAGGGAACTCGCAGGTAGTAGTGAGGGCGGGCAGCAGGGCCAGGAGGTGATGAG--GACACACTGAGGCAGGTACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCCCCC--ACTGCCAAGCAGCGATCCCCAGGAGAGAAGTGGGTAGTCAGTCCTGTTGGGCTCTTAGTAAGCGCAAGGTGCCTGTGGGGTGGCTGGAAAGAAGCCCAGGAGGCGGTTAGGCTCGGCAGCCCGAG-TGCTGTCGGCAGGCTGCCTGCGGTGGGGATACCGTGA------GCACATTTACCCTCCCACCGCTTTCTGGAGTGCTG--GTAACTTCCAGCCCTGTGAGTAGTTTCTGTGACCCTTCAGGTGACA-TTCAGAATTA-CTATCCAATTTCCAGCTG-------------------------------TTTTTCCTTCTAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102697862 632 - 106955855 GGG-----------GCCTTTGCTGTGCTGATAACACACACTGCAAGTTTCTGAGAGGAGACGGTCGCGGGCAGTGTTTCT----------------------------CCAACTCCTTTAACATCTCCCAGGACAGGAGCACGCTTTCGGAAACGCTGCTACAGAAG-ATGTTAGGCAGGAGCAG---CATGGGCCTGAGGCCCCTCTGTAGGCTAATGGGATGGACAGTTCCAAG-GGGACATCCTGAGTGGGCATTGAGGAGGCTGGTGTGGAGACTAAGGGGACCCACAGGTAGTAGAGAGGGCGGGCAGCAGGGCCAGGAGGTGATGA---GAGACACTGAGGCAGGTACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCCCCC--ACTGCCAAGCAGCGATCCCCAGGAGAGAAATGGGTAGTCAGTCCTGTTGGGCACTTGGTAAGCGCAAGGTGCCTGTGGGGTGGCTGCAAAGAAGCCCAGGAGGCGGTTAGGCTCGGCAGCCCGAG-TGCTGTCGGCAGGCTGCCTGCGGTGGGGATACCATGA------GCACATGTACCCTCCCACCGCTTTCTGGAGTGCTG--GTAACTTGCAGCCCTGTGAGTAGTTTCTGTGACCCTTCAGGTGACA-TTCAGAATTA-CTATCCAATTTCCAGCTG-------------------------------TTTTTCCTTCTAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59985901 633 +  64156825 GGG-----------G-CTTTGCTGTGCTGATAACACACACTTCAAGTTTCTGAGAGGAGACGGTGGTGGGCAGTGCTTCT----------------------------CCAACTCCTTTAACATCGCCCAGGACAGGAGCCTGCTTTCGGAAATGCTGCTACAGAAGAATGTTAGGCAGGAGCAG---CGTGGGCCTGAGGCCCCTCTGTGGGCTAACGGGATGGATGGTTTCGAG-GGGACACCCTGAGTGGGCACTTAGGGGGCTGGCGTGGAGACTAAGACGACCCGCGGGTAGTAGGGAGGGCGGGCAGCAGGGCCAGGAGGCGATGAGGAGAGACACTGAGGCAGATACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCTCCC--ACTGCCAAGCAGCGAT-CCCAGGAGAGAAGTGGTTAGTCAGTCCTGTTGGGCGCTTGGTAAGCGCAGGGAGTCTGTGGGGTGGCTGGAAAGAAGTGCAGGAGGTGGTTAGGCTCAGCAGCCTGAG-TGCTGTCGGCAG-CTGCCTGCAGTGGGGATACCATGA------GCACATTTACCCTCCCACCACTTTCTGGAGTGCTG--GTAACTTACAGCCCTGTGAGTAGTTTCTATGACCCTTCAGGTGATG-TTCAGAATTA-CTATCCAATTTCTAGCTG-------------------------------TTTTTCCTTCTAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55010616 633 +  59248254 GGG-----------G-CTTTGCTGTGCTGATAACACACACTTCAAGTTTCTGAGAGGAGACGGTGGTGGGCAGTGCTTCT----------------------------CCAACTCCTTTAACATCGCCCAGGACAGGAGCCTGCTTTCGGAAATGCTGCTACAGAAGAATGTTAGGCAGGAGCAG---CGTGGGCCTGAGGCCCCTCTGTGGGCTAACGGGATGGATGGTTTCGAG-GGGACACCCTGAGTGGGCACTTAGGGGGCTGGCGTGGAGACTAAGACGACCCGCGGGTAGTAGGGAGGGCGGGCAGCAGGGCCAGGAGGCGATGAGGAGAGACACTGAGGCAGATACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCTCCC--ACTGCCAAGCAGCGAT-CCCAGGAGAGAAGTGGTTAGTCAGTCCTGTTGGGCGCTTGGTAAGCGCAGGGAGCCTGTGGGGTGGCTGGAAAGAGGTGCAGGAGGTGGTTAGGCTCGGCAGCCTGAG-TGCTGTCGGCAG-CTGCCTGCAGTGGGGATACCATGA------GCACATTTACCCTCCCACCACTTTCTGGAGTGCTG--GTAACTTACAGCCCTGTGAGTAGTTTCTGTGACCCTTCAGGTGACG-TTCAGAATTA-CTATCCAATTTCTAGCTG-------------------------------TTTTTCCTTCTAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47116883 634 +  51301725 GGG-----------GCCTTTGCTGTGCTGATAACACACACTTCAAGTTTCTGAGAGGAGACGGTGGTGGGCAGTGCTTCT----------------------------CCAACTCCTGTAACATCGCCCAGGACAGGAGCCTGCTTTCGGAAACGCTGCCACAGAAGAATGTTAGGCAGGAGCAG---CGTGGGCCTGAGGCCCCTCTGTGGGCTAACGGGATGGACGGTTTCGAG-GGGACACCCTGAGTGGGCACTgggggggCTGGCGTGGAGACTAAGACGACCCGCAGGTAGTAGGGAGGGCGGGCAGCAGGGCCAAGAGGTGATGAGGAGAGACACTGAGGCAGATACTccaggggccaggctgggctctgccACCTTCCCAGCCTCCC--ACTGCCAAGCAGCGAT-CCCAGGAGAGAAGTGGTTAGTCAGTCCTGTTGGGCGCTTGGTAAGCGCAGGGAGCCTGTGGGGCGGCTGGAAAGAAGTGCAGGAGGTGGTTAGGCTCGGCAGCCTGAG-TGCTGTCGGCAG-CTGCCTGCAGTGGGGATACCATGA------GCACATTTACCCTCCCACCACTTTCTGGAGTGCTG--GTAACTTACAGCCCTGTGAGTAGTTTCTGTGACCCTTCAGGTGATG-TTCAGAATTA-CTATCCAATTTCTAGCTG-------------------------------TTTTTCCTTCTAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46824088 634 +  50890351 GGG-----------GCCTTGGCTGTGCTGATAACACACACTTGAAGTTTCTGAGAGGAGACGGTGGTGGGCAGTGCGTCT----------------------------CCAACTCCTTTAACATCGCCCAGGACAGGAGCCTGCTTTCGGAAATGCTGCTACAGAAGAGTGTTAGGCAGGAGCAA---CGTGGGCCTGAGGCCCCTCTGTGGGCTAATGGGATGGACGGTTTCAAG-GGGACACCCTGAGTGGGCACTGAGGGGGCTGGCGTGGAGACCAGGACGACCCGCAGGTAGTAGGGAGGGCGGGCAGCAGGGCCAGGAGGTGATGAGGAGAGACACTGAGGCAGATACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGCTCCC--ACTGCCAAGCAGCGAT-CCCAGGAGAGAAGTGGTTAGTCAGTCCTGTTGGGCGCTTGGTAAGTGCAGGGAGCCTGTGGGGTGGCTGGAAAGAAGTGCAGGAGGTGGTTAGGCTCAGCAGCCTGAG-TGCTGTCGGCAG-CTGCCTGCAGTGGGGATACCATGA------GCACATTTACCCTCCCACCACTTTCTGGAGTGCTG--GTAACTTACAGTCCTGTGAGTAGTTTCTATGACCCTTCAGGTGATG-TTCAGAATTA-CTATCCAATTTCTAGCTG-------------------------------TTTTTCCTTCTAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45401564 635 +  49145316 GGG-----------GCCTTGGTGGTGCGAGTAACACACACTGCGTGTTTATGAGAGAAGACGGTGGTGTGCAGTGCTTCT----------------------------CTACCTCCCCTAACATCTCCCAGGACAGCAGCA-GCTTCAGAAAACGCTGCTACAGAAGAATGTTAGGCAGGAGCAG---CCGGGGCCTGAGGCCCCTCTGTGGGCTGATGGGATGCATGGTTCCAAG-GGGACACCCTGAGTGGACATTGAGGAGGCTGGTGTGGAGACTAAGGGGACCTGCAGGTAGTGGGGAAGGTAGGCAGCAGGGCCAGGTGGTGATGAAAAGAGACGCCAAGGTAGGGACTCCAGGGGCCAGGCTGGGCTCTGCCACCTTCCCAGGTCCCC--ACCGCCAAGCAGCGAT-CCTAGGAGAGAAGTGGGTAGTCAGTCCTGCTGGGCGCCTGGTAAGCGCAGGGTACCCGTGGGGTGGGTGGAAAGAAGC-CAGGAGGCGGTTAGGTTCAGCAGCCTGAGCTGCTGTTGGCAGCATGCCTGTGGCGGAGATGCCAGGA------GCACGTTTACCCTCCCACCACTTTCGGGAGCGCTG--GTAATTTACGACCCTGTGAGTAGTTTCTCTGACCCTTCCGGTGGCATTTCAGAAGTG-CCATCCAATTTCCAGCTG-------------------------------TTTTTCCTTCTAC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3654512 633 + 145441459 CAGAAAGTCAGACTGCCTGTGCTGCACTGACTGCAGGAAGCAC---TTCCTGAGAGAGGAAGGCAGTATGCGGCACTTCTGAATTCCTTTAGATCCTAATGAATAAACTCAGCTCTGTCAATTTCTCCTACAATAAGAACATATCTTAGGAGAC----------AAGAATGTT--GTTGAAGAAG---C-----CCAGAATTCCTT---TAGGCTAATAGAAAGGACAGTCTCCAGTGGGAGGACCTAAGTGCACACTAATGAAGCTAATTTGGGGACCAGG----------------------GTTTAGGAGCA--GCCAG--AGTAATGGAGTGAGGAGGTGGGGCAAGGAATCATGGGGGTGGGCTTAGTTCTGCCACCTTATCAGGCCCCTTGACTGTCAAGCAGAAGT-CCCAGGAAAAATGTGAATGGCCAGTTTTCTTTGTGATTT----------------TTGTGTGGTGGTC----AGAAGGCTAGGAGGCAGTTTGGCATGGCAGCCTGGT-TGTTGG----AGCGTAGTTTAAGTAGGGATGCCCTGGAGCACTGCATTTTTACAGTTTCATGATTAGCTGACATTCGGAAGGAATTGATTGTCCTAG-------TTCCCTTACGCTTAA----ACA-TTTAGGCTGATCCAACTAATTGCAAATTGAGGTTGGGATTTTTGTTTTTGTTTGTGTTGtttgtttcttttac
i mm10.chr7                 C 0 I 53
s canFam3.chr1               19615381 383 - 122678785 TGG-----------GTCTTGGCTGTGCTAGTGATGGACATCATGGACTTCCGAGAGGGGA-----------GGCACTTCT-----------------------------CAGGCCGTCTGTGTTCCCCCA------------------GTGAACCCTGT-------GGATCTGGGACGGGAGCTGGTCCTCGAACCAGGGTCC-----------------------TAGTTAGGGA-GGAGCCTGGTGGGAGGGCACCGGTAGGGCTGCTGTAGGCCCTGGG-----------------GGGGGGG---------GGGCCAGGAACCAGTTGG--------------------------------------------------TCTCATAATCCC---TTGACATGTGGCATG---------------------------------------------------------TGTGAGGTG--------------TGGGGAGCAGTTAGCTGC------------CACTGT------------------------GCCCTGG------GCGTG-------TCACTCTGCTCTCTAG-GTAGTG--GTCATCAGCAGCCCTTCAAGTAGCTTTTGTGACCCTTGAAGTGACA-TTCAGGACTG-CTGTCCAATTT--AGATT-------------------------------TTTTTTCTTC---
i canFam3.chr1              I 99 C 0

a score=69762.000000
s hg38.chr19_GL949751v2_alt    122608 22 +   1002683 TCTTGGACATTAGGCGGCTCCA
s panTro4.chr19              59056572 22 +  63644993 TCTTGGACATTAGGCGGCTCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55933317 22 +  60714840 TCTTGGACATTAGGCGGCTCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102698494 22 - 106955855 TCTTGGACATTAGGCAGCTCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59986534 22 +  64156825 TCTTGGACATTAAGCTGCTCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55011249 22 +  59248254 TCTTGGACATTAAGCTGCTCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47117517 22 +  51301725 TCTTGGACATTAAGCTGCTCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46824722 22 +  50890351 TCTTGGACATTAAGCTGCTCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45402199 22 +  49145316 TCTTAGACGTTAGGCTGCTCCA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19615764 20 - 122678785 TCTTGGAC--TCAGCTGGTTGG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3655145 53 + 145441459 I

a score=7231605.000000
s hg38.chr19_GL949751v2_alt    122630 2004 +   1002683 GCTAATCTCATATT----GAGAA--------------CACTTAAGTGTT--------------------TCCCACTAGTCCTCTGGCTTCCAACAGATG-GATCTTCTCTGGCTGAC-------AACCTAAGTTGTGTGTCAGATCCCTGTGGGGGTGTCCAT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAGGCTGGAAATCAGTGTGAGTGTTTTAAGCATGAAGGTG---ATTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGT------CCCCAAGAGGGCAGGAGCAGGTGGG--GGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACA--AAGATGGAGCCTGAG------GTGGGGGTGGTGA--GGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAATGGGGTCCCCGCCCCCGCAGCACCCCCAAGTGCCCTGGGCCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCTCCCTATGCCCAGGCTGTGGCCCCACCAGCTCCCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGTCCAGCCTAgcggaggcggaggcggcggcagcggaggtggaggGAGCAGCAGCAGTAGTAACAG--CAGTGCCGGTGGAGGGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGAGGAGGCAGCGGGGTGGGGGGCGTGGGCGGGGCTGGGCAGCAGGCAGCAGCCC-TTTCCA-TTTACTCTT--TGTTCCCAGGTTACAGCTCAGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCGGCAGGGTTGGGATGGCAGCCTTTTGAAACAGAGAGGCGCAGGCGCCTCACCCCCGCATCGGTGGGTTCTGAA-CCCCCCGCCCTTGCTGCTGGGAATGGC---CAAGCGCTA------TCCTCCATCTCCCTCGGGTGTT-ACACCCCCACTTCTTTCCAGCAAGGAAAC----TACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAATACGTTCTCATCTAAGTGGAAGTTTTCTCAAGAGCCCCATACCCTTTCCTCCCCATTTCTGTTACCTGCCTGAGGC-CAATTGACTGCCACCGGAGGGTCACTGTTTCACTTTTCAAAGTGAATTGTCCCGAAGTCCTTATTCCTCTGCAGCCACTCCTTCAAATCTTAGCTCAGACCATTCCACTGGGTCTGCCTGTTTCCCGAAGAATGCCCTAAGAAAGAT---------CAGTGTGCACAAAGGAAAGGCCTGCTTCCT------GCCCCCTCACCCCAGCTCCAGCTGGCCTGCCCAAGGGG------GAGTGGGCCC--TGTGAACACCTGCCCAGG----------GCAAGTGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCGAGAATCCTCACC-CCCACCCCCACAGCTCTGCTCTGCTGATGAGAAACCATTCCAAAGATTGGGCTCTGCCTTTGTTTGCCCAGAGAACCACTTCTTTCTCCCATCTGTCTGCCCTCACCTGCCCCTCTCAGATCCCATCTGATCTGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCATCCCACCCTCAGGGA-CCC---TCCTCTCAACCCC-CTCTTCCATGCTCTCTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACGGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTGCTCAATGGGCCTCCACAGTTCAGCACCGCCCCAGAAATCAAGGTGGGCTCCTCGGACAT--CCCCCGAGCC-----------------------------------------------------------------------------------------T
s panTro4.chr19              59056594 2093 +  63644993 GCTAATCTCATATT----GAGAA--------------CACTTAAGTGTT--------------------TCCCACTAGTCCTCTGGCTTCCGACAGATG-GATCTTCTCTGGCTGAC-------AACCTAAGTTGTGTGTCAGATCCCTGTGGGGGTGTCCAT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAGGCTGGAAATCAGTGCGAGTGTTTTAAGCATGAAGGTG---ATTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGT------CCCCAAGAGGGCAGGAGCAGGTGCG--GGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACG--AAAATGGAGGCTGAG------GTGGGGGTGATGA--GGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAATGGGGTCCCCGCCCCAGCAGCACCCCCAAGTGCCCTGGGCCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCTCCCTATGCCCAGGCTGTGGCCCCACCAGCTCCCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGTCCAGCCTAgcggaggcggaggaggcggcagcggaggcggagggagcagcagcagtagtaacag--cagtgccggtggaggGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGCGGGGTGGGGGGCGTGGGCGGGGCTGGGCAGCAGGCAGCAGCCC-TTTCCA-TTTACTCTT--TGTTCCCAGGTTACAGCTCAGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCGGCAGGGTTGGGATGGCAGCCTTTTGAAACAGAGAGGCGCAGGCGCCTCACCCCCGCATCGGTGGGTTCTGAA-CCCCCCGCCCTTGCTGCTGGGAATGGC---CAAGCGCTA------TCCTCCATCTCCATCGGGTATT-ACACCCCCACTTCTTTCCAGCAAGGAAAC----TACATCAGCCTCCCTGCTTTGCCCTTAAGAACATTCTAAAATACGTTCTCATCTAAGTGGAAGTTTTCTCAAGAGCCCCATACCCTTTCCTCCCCATTTCTGTTACCTGCCTGAGGC-CAACTGACTGCCACCGGAGGGTCACTGTTTCACTTTTCAAAGTGAATTGTCCCGAAGTCCTTATTCCTCTGCAGCCACTCCTTCAAATCTTAGCTCAGACCATTCCCCTGGGTCTGCCTGTTTCCCGAAGAATGCCCTAAGAAAGAT---------CAGTGTGCACAAAGGAAAGGCCTGCTTCCT------GCCCCCTCACCCCAGCTCCAGCTGGCCTGCCCAAGGGG------GAATGGGCCC--TGTGAACACCTGCCCAAG----------GCAAGTGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCGACAGTCCTCACC-CCCACCCCCACAGCTCTGCTCTGCTGATGAGAAACCATTCCAAAGATGGGGCTCTGCCTTTGTTTGCCCAGAGAACCACTTCTTTCTCCCATCTGTCTGCCCTCACCTGCCCCTCTCAGATCCCATCTGATATGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCATCCCACCCTCAGGGA-CCC---TCCTCTCAACCCC-CTCTTCCATGCTCTCTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACGGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTGCTCAATGGGCCTCCACAGTTCAGCACCGCCCCGGAAATCAAGGTGGGCTCCTCGGACAT--CCCCCGAGCCTCTGTGTCCTGACTCTGTTGTTTCTTTCCTCCAGGTCTCTAGCTGCACCCCCTGCCCCCACCCTCTTTCTGGATCTCTTTCTCTGGCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55933339 1995 +  60714840 GCTAATCTCAGATT----GAGGA--------------CACTTAGGTGTG--------------------TCCCATTAGTCCCCTGGCTTCCAACAGATG-GGTCTTCTCTGGCTGAC-------AACCTAAGTTGTGTGTCAGATCCCTGTGGGGGTGTCCGT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAGGCTGGAAATCAGTGTGAGTGTTTTAAGCATGAAGGCG---ATTGAAGCCATGAGGGTG----AGGTCACCCAGGT------CCCCAAGAGGGCAGGGGCAGTTGGG--GGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACG--AAAATGGAGCCTGAG------GTGGGGATGGTGA--GGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAATGGGGTCCCCGCCCCAGCAGCACCCCCAAGTGCCCTGGGCCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCTCCCTATGCCCAGGCTGTGGCCCCACCAGCTCCCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGTCCAGCCTAgcggaggcggtggaggcggcggcggaggcggagggagcggcagcAATAGTAACAGCACAGTGCCGGTGGAGGGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGTGGGGTGGGGGGCATGGACGGGGCTGGGCCGCAGGCAGCAGCCC-TTTCCA-TTTACTCTT--TGTTCCCAGGTTACAGCTCAGTTGTGGCAGACAGCCCAGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCCTGGGCCCCCCTTCTGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCGGCAGGGTTGGGGTGGCAGCCTTTCGAAACAGAGAGGCACTGGTGCCTCACCCCTGCATCGATGGGTTCTGAA-CCACCCGCCCTTGCTGCTGGGAATGGC---CGAGCGCTA------CCCTCCACCTCCGTCGGGTGTT-ACACCTCCACTTCTTTCCAGCAAGGAAAC----TACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAATACGTTCTCATCTAAGTGGAAGTTTTCTCAAGAGCCCCATACCCTTTCCTCCCCATTTCTGTTACTTGCCTGAGGC-CACTTGACTGCCACCGGAGGGTCACTGTTTCACTTTTCAAAGTGAATT--------GTCCTCATTCCTCTGCAGCCACGCCTCCAAATCTTAGCTCAGACCATTCCACTGGGTCTGCCTGTTTCCTGAAGAATGCCCTAAGAAAGAT---------TAATGTGCACAAAGGAAAGGCCTGCTTCCCG-----GCCCCCTCACCCTAGCTCCAGCTAGCCTGCCCAAGGGG------GAGTGGGCCC--TGTGAACACCTGCCCAAG----------GCAAGTGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCAAGAATCCTCACC-CCCACCCCCACAGCTCTCCTCTGCTGATGAGAAACCATTCCAAAGATTGGGCTCTGCCTTTGTTTGCCCAGAGAACCACTTCTTTCCCCCATCTGTCTACCCTCAGCTGCCCCTCTCAGATCCCATCTGATCTGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCATCCCACCCTCAGGGA-CCC---TCCTCTCAACTCC-CTCTTCCATGCTCTCTCTCCAGGAAGGAACCCAGTGCAGCAGCCCCAACGGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGCGATGCCAAGGCAGCCGGTGCCCTGCTCAATGGGCCTCCACAGTTCAGCACCGCCCCGGAAATCAAGGTGGGCTCCTAGGACGT--CCCCCGAGCC-----------------------------------------------------------------------------------------T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102698516 1994 - 106955855 GCTAATCTCATATT----GAGGA--------------CACTTAGGTGTT--------------------TCCCTCTAGTCCCCTGGCTTCCAACAGATG-GATCTTCTCTGG-TGAC-------AACCtaagttgtgtgtcagatccctgtgggggtgtccat-ggggcggtgtccagacaggacttggga-agctgg---gcaggctggaaatcagtgtgagtgttttaagcatgaaggtg---attgaagccatgagggtgagtaaggtcacccaggT------CCCCAAGAGGGCAGGAGCAGTTGGG--GGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACG--AAAATGGAGCCTGAG------GTGGGG-TGGTGA--GGGAGACCTGCTGGCCCACTGAGTCCTGACCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAATGGGGTCCCCGCCCCAGCAGCACCCCCAAGTGCCCTGGGCGCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCTCCCTATGCCCAGGCTGTGGCCCCACCAGCTCCCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGTCCAGTCTAGCggaggcggtggaggcggcggcggaggcggaggGAGCGGCAGCAATAGTAACAG--CAGTGCCAGTGGAGGGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGCGGGGTGGGGGGCATGGGCGGGGCTGGGCAGCAGGCGGCAGCCC-TTTCCA-TTTACTCTT--TGTTCCCAGGTTACAGCTCCGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCCTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCGGCAGGGTTGGGATGGCAGCCTTTCGAAACAGAGAGGCGCTGGTGCCTCACCCCCACATCGATGGGTTCTGAG-CCCCCCGCCCCTGCTGCTGGGAATGGC---CGAGCGCTA------TCCTCCACCTCCGTTGGGTGTT-ACACCCCCACTTCCTTCCAGCAAGGAAAC----TACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAATACATTCTCATCTAAGTGGAAGTTTTCTCAAGAGCCCCATACCCTTTCCT-CCCGTTTCTGTTACCTGCCTGAGGC-CACTCGACTGCCACCGGAGGGTCACTGTTTCAC-TTTCAAAGTGAATTGTCCTGAGGTCCTCATTCCTCTGCAGCCACTCCTCCAAATCTT-----AGACCATTCCACTGGGTCTGCCTGTTTCCTGAAGAATGCCCTAAGAAAGAT---------CAATGTGCACAAAGGAAAGGCCTGCTTCCCG-----GCCCCCTCACCCCAGCTCCAGCTGGCCTGCCCAAGGGG------GAGTGGGCCC--TGTGAACACCTGCCCAAG----------GCAAGGGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCGATAATCCTCACC-CCCACCCCGACAGCTCTGCTCTGCTGATGGGAAACCATTCCAAAGATGGGGCTCTGCC--TGTTTGCCCAGAGAACCACTTCTTTCTCCCATCTGTCTACCCTCAGCTGCCCCTCTCAGATCCCATCTGATCTGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCACCCCACCCTCAGGGA-CCC---TCCTCTCAACCCC-CTCTTCCATGCTGTCTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACAGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCTAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTGCTCAATGGGCCTCCACAGTTCAGCACTGCCCCGGAAATCAAGGTGGGCTCCTCGGACAT--TCCCCGAGCC-----------------------------------------------------------------------------------------T
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59986556 1989 +  64156825 GCTAATCTCATATT----GAGGA--------------CATTTAGGTGTT--------------------TCCCACTAGTCCCCTGGCTTCCAACAGATG-GATCTTCTCTGGCTGCC-------AACCTAAGTTGTG-GTCAGATCCCTGTGGGGGTGTCCGT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAGGCTGGAAATCAGTGTGAGTGTTTTAAGCATGAAGGTG---ACTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGT------TCCCAGGAGGGCGGGAGCAGTTGGG--GGCAGCAAGGCCAGAGAGGAGGCTGCTGGGACG--AAAATGGAGCCTGAG------GTGGGGGTGGTGA--GGGAGACCAGCTGGCCCACTGGGTCCTGATCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAACGGGGTCCCCGCCCCAGCAGCACCCCCAAGTGCCCTGGGTCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCCCCCTATGCCCAGGCTGTGGCCCCATCGGCTACCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGCCCAGCCTggcggaggt------ggcggcggcggaggtggagggagcggcagcaatagtaacag--cagtgccggtggaggGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGCGGGGT---GGGCATGGGCGGGGCTGGGCAGCCGCCGGCAGCCC-TTCCCATTTTATTCTT--TGTTCCCAGGTTACAGCTCAGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCCTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCAGCAGGGTTGGGATGGCGGCCTTTCGGCACAGAGAGGCGCTGGTGCCTCACCCCTGCATCAGTGGGTTCTGGG-TCCCCCGCCCTTGCTGCTGGGAATGTC---CGAGCACTG------TCCTCCACCTCTGTCGGGTGTTAACACCCCCACTTCTTTCCAGCACGGAAAC----TACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAATATGTTCTCATCTAAGTGGAAGTTTTCTCAAGAACCCCATACCCTTTCCTCCCCATTTCTGTTACCTGCCCAAGGG-TACTTGATTACCACTGGAGGGTCACTGTTCCACTTTTCAAAGTGAATTGTCTCGAAGTCCTCGTTCCTCTGCAGCCACTCCTCCAAATCTTAGCTCAGACCATTCCCCTGTGTCCGCCTGTTTCCCGAAGACTGCCCCAAGAAAGAT---------CAGTGTGCACAAAGGAAAGGCCTGCTTCCTG-----GTCCCCTCACCCCAGCTCCAGCTGGCCTGCCCAAGAGG------GAATGGGCCC--TGCGTCCACCTGCCCAAG----------GCAGCTGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCGAGAATCCTCACT-CCCACCCCCGCAGCTCTGCTCTGCTGATGAGAAACCATTCCAAAGATTGGGTTCTGCCTTTGTTTGCCCAGAG-----CCACTTTCTCCCATCTGTCTACCCTCAGCCGCCCCTCTCAGATCCCATCTGATGTGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCATCCCACCCTCAGGGG-CCC---TCCTCTCAACCCCTCTCTTCCATG----CTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACAGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTACTCAATGGGCCTCCACAGTTCAGCACCGCCCCGGAAATCAAGGTGGGCTCCTTGGACAT--CCCCCGAGCC-----------------------------------------------------------------------------------------T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55011271 1989 +  59248254 GCTAATCTCATATT----GAGGA--------------CATTTAGGTGTT--------------------TCCCACTAGTCCCCTGGCTTCCAACAGATG-GATCTTCTCTGGCTGCC-------AACCTAAGTTGTG-GTCAGATCCCTGTGGGGGTGTCCGT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAggctggaaatcagtgtgagtgttttaagcatgaaggtg---actgaagccatgagggtgagtaaggtcacccaggT------TCCCAGGAGGGCGGGAGCAGTTGGG--GGCAGCAAGGCCAGAGAGGAGGCTGCTGGGACG--AAAATGGAGCCTGAG------GTGGGGGTGGTGA--GGGAGACCAGCTGGCCCACTGGGTCCTGATCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAACGGGGTCTCCGCCCCAGCAGCACCCCCAAGTGCCCTGGGTCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCCCCCTATGCCCAGGCTGTGGCCCCATCGGCTACCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGCCCAGCCTggcggaggt------ggcggcggcggaggtggagggagcggcagcAATAGTAACAG--CAGTGCCGGTGGAGGGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGCGGGGT---GGGCATGGGCGGGGCTGGGCAGCCGCCGGCAGCCC-TTCCCATTTTATTCTT--TGTTCCCAGGTTACAGCTCAGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCCTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCAGCAGGGTTGGGATGGCGGCCTTTCGGCACAGAGAGGCGCTGGTGCCTCACCCCTGCATCAGTGGGTTCTGGG-CCCCCCGCCCTTGCTGCTGGGAATGTC---CGAGCACTG------TCCTCCACCTCTGTCGGGTGTTAACACCCCCACTTCTTTCCAGCACGGAAAC----TACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAATATGTTCTCATCTAAGTGGAAGTTTTCTCAAGAACCCCATACCCTTTCCTCCCCATTTCTGTTACCTGCCCAAGGG-TACTTGATTGCCACTGGAGGGTCACTGTTCCACTTTTCAAAGTGAATTGTCTCGAAGTCCTCGTTCCTCTGCAGCCACTCCTCCAAATCTTAGCTCAGACCATTCCCCTGTGTCCGCCTGTTTCCCGAAGACTGCCCCAAGAAAGAT---------CAGTGTGCACAAAGGAAAGGCCTGCTTCCTG-----GTCCCCTCACCCCAGCTCCAGCTGGCCTGCCCAAGAGG------GAATGGGCCC--TGCGTCCACCTGCCCAAG----------GCAGCTGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCGAGAATCCTCACT-CCCACCCCCGCAGCTCTGCTCTGCTGATGAGAAACCATTCCAAAGATTGGGTTCTGCCTTTGTTTGCCCAGAG-----CCACTTTCTCCCATCTGTCTACCCTCAGCCGCCCCTCTCAGATCCCATCTGATGTGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCATCCCACCCTCAGGGG-CCC---TCCTCTCAACCCCTCTCTTCCATG----CTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACAGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTACTCAATGGGCCTCCACAGTTCAGCACCGCCCCGGAAATCAAGGTGGGCTCCTTGGACAT--CCCCCGAGCC-----------------------------------------------------------------------------------------T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47117539 1989 +  51301725 GCTAATCTCATATT----GAGGA--------------CATTTAGGTGTT--------------------TCCCACTAGTCCCCTGGCTTCCAACAGATG-GATCTTCTCTGGCTGAC-------AACCTAAGTTGTG-GTCAGATCCCTGTGGGGGTATCCGT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAGGCTGGAAATCAGTGTGAGTGTTTTAAGCATGAAGGTG---ACTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGT------TCACAGGAGGGCGGGAGCAGCTGGG--GGCAGCAAGGCCAGAGAGGAGGCTGCTGGTACG--AAAATGGAGCCTGAG------GTGGGGGTGGTGA--GGGAGACCAGCTGGCCCACTGGGTCCTGATCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAACGGGGTCCCTGCCCCAGCAGCACCCCCAAGTGCCCTGGGCCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCCCCCTATGCCCAGGCTGTGGCCCCATCGGCTACCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGCCCAGCCTggcggaggc------ggcggcggcggaggtgGAGGGAGCGGCAGCAATAGTAACAG--CAGTGCCGGTGGAGGGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGCGGGGT---GGGCATGGGCGGGGCTGGGCAGCCGCCGGCAGTCC-Ttcccattttattctt--tgttcccAGGTTACAGCTCAGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCCTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCATCAGCAGGGTTGGGATGGCGGCCTTTCAGCACAGAGAGGCGCTGGTGCCTCACCCCTGCATCAGTGGGTTCTGGG-CCCCCCGCCCTTGCTGCTGGGAATGTC---TGAGCACTG------TCCTCCACCTCTGTCGGGTGTTAACACCCCCACTTCTTTCCAGCATGGAAAC----GACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAACGTGTTCTCATCTAAGTGGAAGTTTTCTCAAGAGCCCCATACCCTTTCCTCCCCATTTCTGTTACCTGCCCAAGGC-TACTTGACTGCCACTGGAGGGTCACTGTTCCACTTTTCAAAGTGAATTGTCTCGAAGTCCTCATTCCTCTGTAGCCACTCCTCCAAATCTTAGCTCAGACCATTCCACTGTGTCCGCCTGTTTCCCGAAGACTGCCCCAAGAAAGAT---------CAGTGTGCACAAAGGAAAGGCCTGCTTCCTG-----GTCCCCTCACCCCAGCTCCAGCTGGCCTGCCCAAGAGG------GAATGGGCCC--TGTGTCCACCTGCCCAAG----------GCAGCTGGTTTTG-------------ATCAGCCTGTGACCTGGT---------------------GGAGCACCCGATAATCCTCACT-CCCACCCCCGCAGCTCTGCTCTACTGATGAGAAACCATTCCAAAGATTGGGTTCTGCCTTTGTTTGCCCAGAG-----CCACTTTCTCCCATCTGTCTACCCTCAGCCGCCCCTCTCAGATCCCATCTGATGTGTGCAGtctcccctctctccagccaggcctctctgcccatcccaccctcagggg-ccc---tcctctcaacccctctctTCCATG----CTCTCCAGGAAAGAACCCAGTGCGGCAGCCCCAACAGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTACTCAATGGGCCTCCACAGTTCAGCACCGCCCCGGAAATCAAGGTGGGCTCCTTGGACAT--CCCCCGAGCC-----------------------------------------------------------------------------------------T
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46824744 1984 +  50890351 GCTAATCTCATATT----GA-GA--------------CATTTAGGTGTT--------------------TCCCACTAGTCCCCTGGCTTCCAACAGATG-GATCTTCTCTGGCTGAC-------AACCTAAGTTGTG-GTCAGATCCCTGTGGGGGTGTCCGT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCTGG---GCAggctggaaatcagtgtgagtgttttaagcatgaaggtg---actgaagccatgagggtgagtaaggtcacccaggT------TCCCAGGAGGGCGGGAGCAGTTGGG--GGCAGCAAGGCCAGAGAGGAGGCTGCTGGGACG--AAAATGGAGCCTGAG------GTGGGGGTGGTGA--GGGAGACCAGCTGGCCCACTGGGTCCTGATCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCCGGCCCCCCGCCTGCTGCCTCTGCCTTGAGCACCACTCCTGGCAACAACGGGGTCCCCGCCCCAGCAGCACCGCCAAGTGCCCTGGGCCCCAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCCCCCTATGCCCAGGCTGTGGCCCCATCGGCTACCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCAGCGTCCAGCCTggcggaggc------ggcggcggcggaggtggagggagcggcagcAATAGTAACAG--CAGTGCCGGTGGAGGGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAGGCAGCGGGGT---GGGCATGGGCGGGGCTGGGCAGCCGCCGGCAGCCC-TTCCCATTTTATTCTT--TGTTCCCAGGTTACAGCTCAGTTGTGGCAGACAGCCCGGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAGCAGCCAGGCCCTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTCGGCCACCAGCAGGGTTGGGATGGCGGCCTTTCGGCACAGAGAGGCGCTGGTGCCTCACCCCTGCATCAGTGGGTTCTGGG-CCCCCCGCCCTTGCTGCTGGGAATGTC---CGAGCACTG------TCCTCCACCTCTGTCGGGTGTTAACA-CCCCACTTCTTTCCAGCACGGAAAC----GACATCAGCCTCCCTGCTTTGCCCTTCAGAACATTCTAAAACATGTTCTCATCTAAGTGGAAGTTTTCTCAAGAGCCCCATACCCTTTCCTCCCCATTTCTGTTACCTGCCCAAGGC-TACCTGACTGCCACTGGAGGGTCACTGTTCCACTTTTCAAAGTGAATTGTCTCGAAGTCCTCATTCCTCTGCAGCCACTCCTCCAAATCTTAGCTCAGACCATTCCACTGTGTCCGCCTGTTTCCCGAAGACTGCCCCAAGAAAGAT---------CAGTGTGCACAAAGGGAAGGCCTGCTTCCCG-----G-CCCCTCA--CCAGCTCCAGCTGGCCTGCCCAAGAGG------GAATGGGCCC--TGTGTCCACCTGCCCAAG----------GCAGCTGGTTTTG-------------ATCAGCCTGTGGCCTGGT---------------------GGAGCACCCAAGAATCCTCACT-CCCACCCCCGCAGCTCTGCTCTACTGATGAGAAACCATTCCAAAGATTGGGTTCTGCCTTTGTTTGCCCAGAG-----CCACTTTCTCCCATCTGTCTACCGTCAGCCGCCCCTCTCAGATCCCATCTGATGTGTGCAGTCTCCCCTCTCTCCAGCCAGGCCTCTCTGCCCATCCCACCTTCAGGGG-CCC---TCCTCTCAACCCCTCTCTTCCATG----CTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACAGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCCGGTGCCCTACTCAATGGGCCTCCACAGTTCAGCACCGCCCCGGAAATCAAGGTGGGCTCCTTGGACAT--CCCCCGAGCC-----------------------------------------------------------------------------------------T
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45402221 1991 +  49145316 GCTAATCACATATT----GAGGA--------------CACTTAGGTGTT--------------------TCTCGGTAGTCCCCTGGCTTCCGACAGATG-GATCTTCTCTGGCTGAC-------AACCTAAGCTGTGTGTCAGATCCCTGTGGGGGTGTCCGT-GGGGCGGTGTCCAGGCAGGACTTGGGA-AGCCAG---GCAGGCTGGAAATT------AGTGTTTTAAGCGTGAAGGTG---ATGCAAGCCATGAGGGTGAGTAAAGTCACCCAGGT------TCCCAGGAGGGCGGCAGCAGCTG-G--GGCAGCAAGGCCAGAGAGGAGGCTGCTAGGACA--AAAGTGGAGCCTGAG------GTGGGGGTGGTGA--GGGAGACCAGCTGGCCCCCTGGGTCCTGACCCTCTGCTCTCTC-------CCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCCCAGCTGTGCCACCCACCTATTCCTCTGGCCCCCCACCCACTGCCTCTGCCTTGAGTGCCACCCCTGGCAACAATGGGgcccctgccccagcagcacccccaagtgccctgggccccaaggccagtccagctcccagccacaactcgggcacccctgccccctatgcccaggctgtggccccaccagctcccagtgggcccagcaccacccagccccggccccCCAGCGTCCAGCCTAgtggaggcggtggaggtggcggcggaggcggagggagcagcagcaatagtaacag--cagtgccggtggaggGGCTGGCAAGCAGAATGGCGCCACCAGTGAGTGGGGAATCATCGGGGTGGGGAGCGCGGGCGGGGCTGGGCAGCAGCCGGCAGCCC-TTTCCA-TTGGCTCTT--TGTTCCCAGGTTACAGCTCAGTTGTAGCAGACAGCCCAGCAGAGGTGGCTTTGAGCAGCAGTGGGGGCAACAATGCCAACAGCCAGGCCCTGGGCCCCCCTTCCGGCCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCTTGGCTGTTGACAGGGTTGGGGTGGCAGCCTTTTGGCACAGAGAGGCACTGGTGCCTCACCCCCACCTTGATGGGTTCTGGGCCCCCCCACCCTTGCTCCTGGGAACGTCCAGCAAGTGCTG------TCCTCCACCTCCATCAGGTGTT-GTGCCCCCACT---TTCCAGAAAGGACAC----TACATCAGCCTCTCTGCTTTGCCCTTCATAACGTTCTAAAATACATTCTCATCT-AGTGGAAGTTGTCTCAAGAGCCCCGCACCCTTTCTTCCCCATTTCTGTTACCCGCCCGAGCC-TACTTGACTGCCACAGGA-GGTCAGTGTTCCACTTTTCACATTGAATTGTCCCGAAGTCCTCATTCCTCTGCAGCTACTCCTCCAGATCTTAGCTCAGACGGTTCCACTGGATCT--CCGTTTCCCGAAGAATGCCCCAAGAAAGAGCTTAATTAACAATGTGCACAAAGGAAAGGC---CTTCCTG-----GCCCCCTCGCCCCAACTCCAGCTGGCCTGCCCAAG-GG------GCATGGGCCCTGTGTGTCCACCTGCCCAAG----------GCAGCCTG-------------------------TGTGGCCTGGT---------------------GGAGCCCCCAAGAATCCTCAC--CCCATCCCTGAAGTTCTGCTCTACTGATAAGAAACTGTTCTAAAAATTGGGCTCTGCCTTTGTTTGCCCAGAGAACCACTTCTTTCTCTCATCTGTCTGCCCTCAGCCACCCCTCTCAGATCCCTTCTGATTTGTGCGGGCTCCCCTCTCTCTAGCCAGACCTCTCTGCCCATCCCACCCTCAGGGGACCC---TCCTCTGAGCCCCTCTCCTCCATGCTCTCTCTCCAGGAAGGAACCCAGTGCGGCAGCCCCAACAGGGGCTGGGGGCGTGGCCCCAGGCTCAGGGAACAACTCGGGGGGACCCAGTCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGCTCCCCAACGCCCAGCTTCAGTGATGCCAAGGCAGCTGGTGCCCTGCTCAATGGGCCTCCGCAGTTCAGCACCACCCCGGAAATCAAGGTGGGCTCCTCAGATAT--CCCCTGAGCC-----------------------------------------------------------------------------------------T
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3655198 1817 + 145441459 gctaatctcagactcatagagggctgcctgtctctgcctctcaagtgctaggatcaaaggcatgtgtcaccacTTTAGGTCTCAAGTTCAGGGTATTTGAGAGTTTCCCTTGGTCTCTTGTCTTAACCTAAACCCT--GTCAGATTCATGTGGG-----CTATAGGGACAATGTCCGGGGAGGACTTGGGACAGCTGG---GTGGGCTGGAAGTAAATAG----GTCTTAAACCTGAAGGTG---ATTGAA------------------GTCTCCTAGGT------GCCTCAGAGAATGTGGACAGTTAAT--AGC----AGGTCAGAGGCAAGGC----------------AGGAGGACAAG------AAGAGGGTGGTGGATAGGGGACAGGCTGGTCTAGTA---CCTGACCCTTTGTTTTTTCTTTCTTTCTTCCTGCAGTCTCCAGCCAAAAATGGCTCCAAGCCTGTCCACAGCAACCAGCACCCCCAGTCCCCAGCTGTGCCGCCCACCTACCCCTCTGGCCCCCCACCTACCACTTCTGCCTTGAGCTCCACCCCTGGCAACAATGGGGCCTCTACCCCAGCAGCACCTACAAGTGCCCTGGGCCCTAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGTACTCCTGCACCCTATGCCCAGGCTGTGGCCCCACCTAATGCCAGCGGGCCCAGCAATGCCCAGCCACGGCCCCCCAGTGCCCAGCCAAGCGGGGGA------AGTGGTGGTGGCAGCGGAGGGAGCAGCAGCAATAGTAACAG--TGGCACAGGCGGAGGGGCTGGCAAGCAGAACGGTGCCACAAGTAAGTGGAG----ACCAGTTTGGGGAACA-GGGCAAGG-TGGACAGTAGCTGACAGCCTGTTTACA-CTTGTCCTT-CTTTCCCCAGGCTATAGTTCGGTTGTGGCAGACAGCCCTGCAGAGGTGACCCTGAGTAGCAGTGGGGGCAGCAGTGCCAGCAGCCAAGCCCTTGGGCCCACTTCGGGCCCTCACAACCCAGCTCCCAGCACCTCGTGAGT------------------AGTGGGGTGGCAGTGTGTGGGCAC----AAGCTCTTATGC----CACTTGTTTTA--GGGTTCCAAG---TTCTACCCTTCCTG--GGTAGTACC---TACCCAGTGTGTCCTTTCTTCACCTCAG-CAAGTGTTCTTTTCCCTGCTTCTTACCAAGTGGG------------------------------------------------ACATGTTTTACTCTCGG-------TTTCACAC--------TACACTGTCTT-CCCATTTCTGTTCTTTGCTCTGAGG-CAGCTGACTCCCATGAGTGTGGGGGCTTTTCCCTTTTCCAAGTAAAATATC-----------------------CTAGTCCTCCATTTCTT----------------------CAGCTTG-----------------------ACAT---------CAGATT--ACTAATGAAAGATCTGCTGCCTT-----G----------TCAGCCTCG--TTACCAGTCCTACTGG------GATTGCACCA--TGTG--CATCTGTGCAATCATTTACTCCAAAACTGTTTCAGTGACAATTCTAGAACTACCCTGTCCCCTGTCCTTTAACTTCATAAGCTGTTGGGGGGACCCTAAAATCCTGGTTGCACACCTCAGTACCTCTGCTGTACTGAAGAGGAG----TCCAGAGGTTGGATTC-ACTTCTGCATGCTC---------CAGCTGTCTT---GCTTTCAGCCCCCACCC-CCCTTTTTGGATCCCATAT----------------------------------TCTGTGCCTGT-----CTTCAAGGA-TCT---TAATTTGATT----CTCCTCCATTCT--TTACCCAGAAAGGAATCCAGTACGGCAGCCCCATCAGGGGCTGGGAATGTGGCTTCAGGCTCAGGGAATAACTCGGGGGGACCCAGCCTCTTGGTGCCACTGCCTGTAAATCCCCCCAGTTCTCCAACGCCCAGCTTCAGTGAAGCCAAGGCAGCTGGTACCCTGCTTAATGGTCCTCCACAGTTCAGCACCACCCCAGAAATCAAGGTGAGTTTCTCGGGTGTGAGCCCTGAGCC-----------------------------------------------------------------------------------------T
i mm10.chr7                 I 53 I 917
s canFam3.chr1               19615784 1640 - 122678785 ACTAATTACATACT----GAGGA--------------CATTTAGTTACC--------------------TCCC--------------TGCCCTCAGATG-GGT-GTCTGTGACCGAC-------ACCCT-GGTTGTGTGTCAAACCCCCACCGG-ATGT-TGT-GGGGAGGCGTCCATGTAGGACATGGGG-AGCTGGGGTGGGGGCTGGGATGCA-TGTGAGTGTCTTAGGTGTGAAGGTGGTTATTGAAGCCTTGAGGCTG----AGGTCAGCAGGGGGAGGAAGCTCAGGCAGCCAGGCCCAGTGAGGACGGCAGCCCAGCTTGGAGGAGGGGTGCCGGGGCGGCGGGGGGGAGGGCGGGCAGCATGTGCGGGAGGCTC--AGCAGACCTGCTGGTCAATTGGATCCTGATCCTCT--TCTCTC-------CCACCTGCAGTCTCCAGCCAAAAATGGCTCTAAGCCTGTCCACAGCAACCAGCATCCTCAGTCTCCGGCCGTGCCGCCCAGCTACCCACCTGGCCCCCCACCTGCCACCTCTGCCCTTAGCACCACTCCTGGCAACAATGGGGCCTCCACCCCAGCAGCGCCCACAAGTGCCCTGGgccccaaggccagcccagctcccagccacagttccggcacccctgccccctacgcccaggccgtggccccaccagcccccagcgggtccagcaccacccagccccggcctcccagtgtccagcccggtgggggagggggaagtggtggaggcggcagtggcggcagtggcagtagtaacag--cagtggaggtggaggtgctggCAAACAGAACGGCGCCACCAGTAAGTGGGAGGACTGCAG------GGGGTTGGGGGGGTCTGGG-ATTGGCTGGC--CTC-TTTTCA-TTCTCTCTTCCCACCCCCAGGTTATAGCTCAGTGGTGGCCGACAGCCCGGCAGAGGTGGCTCTCAGCAGCAGTGGGGGCAGTGGTGCCAGCAGCCAGGCTCTGGGCCCCCCATCAGGTCCCCACAACCCACCTCCCAGCACCTCGTGAGTGTCT-------------------------GGCCTTC------------------------------------------------A-GCCCCTGTCCTTGCC-------AGGAC------------------TTCTCCCACTGGGTTGGGTGTC-GTG-TCCAACTTCTTTCCAGCCAGAACATCGTATACGCCAGTCCCCTAGCTTTGCCCTTTTGACTGTTTTAAAACGT-TCCTTGGTTGATTGGGAGTGCTCACA-GAGTTCCATATG------TCCCCTTTCTGGTGACCTGCCTCAGGCTCACCTGACTCCCCTCAGAG-----------------------------------------------------AGCTGCCGCTCCATACCTCAGGTCAGACCTTTC------------------TCAGAAGATGGCCCCAAGAAAGGG---------AGGAGTG---------AAGAGCTGCTCCCTGGGTCTGCCTCCTTAC-CAGGCTCTGGGTGGGCTGCCCCAAGGGATGGACGCACTTGCCC--TGTGTCCATGCACCTAAG-----------------------------------------------------T---------------------GGAACA-----------------TCCACCTC----------------------------------------------------------------------CCACATGCTCC-----------------CCACCCC------------------ATGTGCCGTCGC--------------------CGCGGCCTGACTCGTCCCTGGAGC-ACCGAGCCCTCTC-------TCCTTCTCTG----CTGCCCAGGAAGGAACCCAGTGCAGCAGCCCCTGCAGGGGCTGGGGGTGTGGCCCCAGGCTCAGGGAACAATACAGGAGGACCCAGCCTCCTGGTGCCGCTTCCCGTGAACCCTCCCAGCTCCCCAACACCTAGCTTCAGTGAGGCCAAGGCAGCTGGCGCCCTGCTCAACGGACCTCCACAGTTCAGCACCGCCCCAGAGATCAAGGTGGGCCCC--AGCTG-------------------------------------------------------------------------------------------------------
i canFam3.chr1              C 0 C 0

a score=907990.000000
s hg38.chr19_GL949751v2_alt    124634 319 +   1002683 CTGTGTCCTGACT-------------------CTGTTGTTTCTTTCCTCCAGGTCTCTAGCTGCACCCC--------------CTGCCCCCACCCTCTTTCTGGA--TCTCTTTCTCTGGCTTTCTGTCCCCTTCTCAC-ACTTGCTCTTTCTCCAGGTCTTTCTGTACCACCCTCCCCGTGACCTTGATCTCTGGGGGCTCTCATACCTCCTCTCTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTGCACTTGTTGCTTGCTCTCTCTGGGTCTCCATCTTCATCCCCCCCGCAGGCCCTCAGTTTCTGTCC-------CCGTTTGTCCTCACAAGGCAT
s panTro4.chr19              59058687 319 +  63644993 CTGTGTCCTGACT-------------------CTGTTGTTTCTTTCCTCCAGGTCTCTAGCTGCACCCC--------------CTGCCCCCACCCTCTTTCTGGA--TCTCTTTCTCTGGCTTTCTGTCCCCTTCTCAC-ACTTGCTCTTTCTCCAGGTCTTTCTGTACCACCCTCCCCGTGACCTTGATCTCTGGGGGCTCTCATACCTCCTCTCTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTGTACTTATTGCTTGCTCTCTCTGGGTCTCCATCTTCATCCCCCCGGCAGGCCCTCAGTTTCTGTCC-------CCGTTTGTCCTCACAAGGCAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55935334 319 +  60714840 CTGTGTCCTGACT-------------------CTGCTGTTTCTTTCCTCCAGGTCTCTAGCTGCGCCCC--------------CTGCCCCCACCCTCTTTCTGGA--TCTCTTTCTCTGGCTTTTTGTCCCCTTCTGAC-ACTTGCTTTTTCTCCAGGTCTTTCTGTGCCACCCTCCCCGTGACCTTGATCTCTGGGGGCTCTCATACCTCCCCTCTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTGTACTTGTTGCTTGCTCTCTCTGGGTCTCCATCTTCATCCCCCCCGCAGGCCCTCAGTTTCTGTCC-------CCGTTTGTCCTCATAAGGCAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102700510 319 - 106955855 CTGTGTCCTGACT-------------------CTGCTGTTTCTTTCCTCCAGGTCTCTAGCTGTGCCCC--------------CTGCCCCCACCCTCTTTCTGGA--TCTCTTTCTCTGGCTTTCTGTCCCCTTCTCAC-ACTTGCTGTTTCTCCAGGTCTTTCTGTACCACCCTCCCCGTGACCTTGATCTCTGGGGGCTCTCATGCCTCCCCTCTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTGTACTTGTTGCTTGCTCTCTCTGGGTCTCCATCTTCATCTCCCCCGCAGGCCCTCAGTTTCTGTCC-------CCGTTTGTCCTCACAAGACAT
i nomLeu3.chr10             C 0 I 118
s rheMac3.chr19              59988545 320 +  64156825 CTGTGTCCTGACT-------------------CTGCTGCTCCTTTCCTCCAGGTCTCTAGCTGCGCCCC--------------TTGCCCCAACCCCCTTTCTGGATCTCTCTCTCTCTAGCTTTCTGTCCCCTTCTCAC-ACTTGCTCGTTCTCCAGGTCTTTCTGTACCACCCTTCCCGTGACCTTGATCTCTGGGGGCTCTCATACCTCCCCTCTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTATACTTGTTGCTTGCTCTCTCTGGGTCTCCATCTTCATCCCCACC-CAGGCCCTCAGTTTCTGTCC-------CCATTTGTCCTCACAAGGCAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55013260 319 +  59248254 CTGTGTCCTGACT-------------------CTGCTGCTCCTTTCCTCCAGGTCTCTAGCTGCGCCCC--------------TTGCCCCAACCCCCTTTCTGGATCTCTCTCTCTCTAGCTTTCTGTCCCCTTCTCAC-ACTTGCTCGTTCTCCAGGTCTTTCTGTACCACCCTTCCCGTGACCTTGATCTCT-GGGGCTCTCATACCTCCCCACTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTATACTTGTTGCTTGCTCTCTCTGGGTCTCCATCTTCATCCCCACC-CAGGCCCTCAGTTTCTGTCC-------CCATTTGTCCTCACAAGGCAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47119528 320 +  51301725 CTGTGTCCTGACT-------------------CTGCTGTTCCTTTCCTCCAGGTCTCTAGCTGCgcccc--------------ttgcccccaccccctttctggatctctctctctctagctttCTGTCCCCTTCTCAC-ACTTGCTCGTTCTCCAGGTCTTTCTGTACCACCCTTCCCGTGACCTTGATCTCTGGGGGCTCTCATACCTCCCCTCTTGTTCCCTCTAAAGCTCTGTTTCTCTgggtctcttttcctttctcttggttATACTTGTTGCTTGCTCTCTCTGGGTCTCCATCTTCATCCCCACC-CAGGCCCTCAGTTTCTGTCC-------CCATTTGTCCTCACAAGGCAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46826728 320 +  50890351 CTGTGTCCTAACT-------------------CTGCTGTTCCTTTCCTCCAGGTCTCTAGCTGCGCCCC--------------TTGCCCCCACCCCCTTTCTGGATCTCTCTCTCTCTAGCTTTCTGTCCCCTTCTCAC-ACTTGCTCGTTCTCCAGGTCTTTCTGTACCACCCTTCCCGTGACCTTGATCTCTGGGGGTTCTTATACCTCCCCTCTTGTTCCCTCCAAAGCTCTGTTTCTCTGGGTCTCTTTTCCTTTCTCTTGGTTATACTTGTTGCTTGCTCTCTCTGCATCACCATCTTCATCCCCACC-CAGGCCCTCAGTTTCTGTCC-------CCATTTGTCCTCACAAGGCAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45404212 296 +  49145316 CTGTATCCTGACTGCTCTCTGCACTCCAGACATTTCTCACCCTTTCCTCCAGGTCTCTAGCTGTGCACC--------------CTCCCCGC-----CTTTCTGGA--TCTTGCTCTCTGGCTTTCTGTCCCCTTCTCAC-ACTTGCTCTTTCTCCGGGTCTTTCTGCACCACGCTCTCC-TGACCATGATCTCTGGGAGCTCTCATA-CTCCCCTCTTG-TCCCTCTGAAG--CTGTTTCTCTGGG--TCTGTTCCTCTCTCTTGGTT----------------------------TCATCCTCATCTCCCC--CAGGCCCTCAGTTTCTGTCC-------CCATTTGTCTTTACAAAGGAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19617424 303 - 122678785 CTGTGTCCTTGTC-------------------CTGCCG------TCCTCCTGTACATTTGCTGTCCCCCAACCTGCAGGTCTGCCACCCTCAACTCCTCTGGGGG--------GCTCTGG-----TGTGCTCTCCACACTGCCTGCGCTCTCTCCTGGTCTCTGAGCTCC------TCCACCATCCTGCCCTCTGGGA---CACTTTCCTGTGCTCCTGTTGGGACCTGCCCTCTTGCACTCTGGG-----TTCCCATCATCTCTGTCCCCATTTCTGCTTACTCCTTCAGACAC-CCATCATCCAGCTCACC----ACCATCCTTTTCCCTTCCGAGGGACCGCCTAAATTGAGAAAAC--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I

a score=2548.000000
s hg38.chr19_GL949751v2_alt    124953 1 +   1002683 A
s panTro4.chr19              59059006 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55935653 1 +  60714840 A
i ponAbe2.chr19             C 0 I 116
s rheMac3.chr19              59988865 1 +  64156825 A
i rheMac3.chr19             C 0 I 116
s macFas5.chr19              55013579 1 +  59248254 A
i macFas5.chr19             C 0 I 117
s papAnu2.chr19              47119848 1 +  51301725 A
i papAnu2.chr19             C 0 I 117
s chlSab2.chr6               46827048 1 +  50890351 A
i chlSab2.chr6              C 0 I 116
s calJac3.chr22              45404508 1 +  49145316 A
i calJac3.chr22             C 0 I 114
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617727 0 - 122678785 C
e nomLeu3.chr10             102700829 118 - 106955855 I

a score=2255.000000
s hg38.chr19_GL949751v2_alt    124954 34 +   1002683 GACTGGTGTACTTTCTGCACAAGTAGAAAGACTG---
s panTro4.chr19              59059007 34 +  63644993 GACTGGTGTACTTTCTGCACAAGTAGAAAGACTG---
i panTro4.chr19             C 0 C 0
s canFam3.chr1               19617727 29 - 122678785 -ACTGATGCCCACTCTG-------GGATGCATTTCAT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e ponAbe2.chr19              55935654 116 +  60714840 I
e calJac3.chr22              45404509 114 +  49145316 I
e nomLeu3.chr10             102700829 118 - 106955855 I
e chlSab2.chr6               46827049 116 +  50890351 I
e papAnu2.chr19              47119849 117 +  51301725 I
e macFas5.chr19              55013580 117 +  59248254 I
e rheMac3.chr19              59988866 116 +  64156825 I

a score=2100.000000
s hg38.chr19_GL949751v2_alt    124988 1 +   1002683 G
s panTro4.chr19              59059041 1 +  63644993 G
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55935770 1 +  60714840 G
i ponAbe2.chr19             I 116 C 0
s rheMac3.chr19              59988982 1 +  64156825 g
i rheMac3.chr19             I 116 C 0
s chlSab2.chr6               46827165 1 +  50890351 G
i chlSab2.chr6              I 116 C 0
s calJac3.chr22              45404623 1 +  49145316 G
i calJac3.chr22             I 114 C 0
s canFam3.chr1               19617756 1 - 122678785 G
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e nomLeu3.chr10             102700829 118 - 106955855 I
e papAnu2.chr19              47119849 117 +  51301725 I
e macFas5.chr19              55013580 117 +  59248254 I

a score=475045.000000
s hg38.chr19_GL949751v2_alt    124989 151 +   1002683 TTGGGTGAATGCAGCCTGGTTCCACCCTTT----AGGAAGCTTC-----CCTGCTGGGGCagctgcagggaag--gttgcggtgggcccaccgaggggcatctgacctgacctgggagacaggcccaggaagg--tctgagagggggtgatgtttaagctgaga
s panTro4.chr19              59059042 152 +  63644993 TTGGGTGAATGCAGCCTGGTTCCACCCTTT----AGGAAGCTTC-----CCTGCTGGGGCagctgcagggaag--gttgcggtgggcccaccgaggggcatctgacctgacctgggagacaggcccaggaagg-ctctgagagggggtgatgtttaagctgaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55935771 152 +  60714840 TTGGGTGAATGCAGCCTGGTTCCTCCCTTT----AGGAAGCTTC-----CCTGCTGGGGCagctgcagggaag--gttgctgtgggcccaccgaggggcatctgacctgacctgggagacaggcccaggaagg-ctctgagagggggtgatgtttaagctgaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102700947 152 - 106955855 TTGGGTGAATGCAGCCTGGTTCCTCCCTGT----AGGAAGCTTC-----CCTGCTGGGGCagctgcagggaag--gttgctgtgggcccaccgaggggcatctgacctgacctgggagacaggcccaggaagg-ctctgagagggggtgatgtttaagctgaga
i nomLeu3.chr10             I 118 C 0
s rheMac3.chr19              59988983 152 +  64156825 ttgggtgAATGCAGCCTGGTTCCTCCCTTT----AGGAAGCTTC-----CCTGCTGGGGCagctgcagggaag--gttgctgtgggcccactgaggggcatctgagctgacctgggagacaggcccaggaggg-ctctgagaggtggtgatgtttaagctgaga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55013697 152 +  59248254 TTGGGTGAATGCAGCCTGGTTCCTCCCTTT----AGGAAGCTTC-----CCTGCTGGGGCagctgcagggaag--gttgctgtgggcccactgaggggcatctgagctgacctgggagacaggcccaggaggg-ctctgagaggtggtgatgtttaagctgaga
i macFas5.chr19             I 117 C 0
s papAnu2.chr19              47119966 152 +  51301725 TTGGGTGAATGCAGCCTGGTTCCTCCCTTT----AGGAAGCTTC-----CCTGCTGGGGCAGCTGCCGGGAAG--GTTGCTGTGGGCCCACTGAGGGGCATCTGAGCTGACCTGGGAGACAGGCCCAGGAAGG-CTCTGAGAGGTGGTGATGTTTAAGCTGAGA
i papAnu2.chr19             I 117 C 0
s chlSab2.chr6               46827166 146 +  50890351 TTGGGTGAATGCAGCCTGGTTCCTCCCTTT----AGGAAGCTTC-----CCTGCTGGGGCACTTgcagggaag--gttgctgtgggcccgctgaggggcatctgagctgacctgggagacaggcccaggaagg-ctctgagagg------tgtttaagctgaga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45404624 147 +  49145316 TTGGGT-AATGCAGCCTGCTTCCTCCCTTT----AGGAAGCTTC-----CCTGCTGGGGTGTCAgcaggagag--gttgctatgggtcccctgaaggatatgtgacctaacctgggagacagg-ccaggaagg-ctctgtgaggggg---tgtttcagctgaaa
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19617757 156 - 122678785 CTGGGTGAATACACCCAGGTCCCGCCTTCTGTACGGGAAGCTGCGTGTGACTGCACGGG-----GCAGGGCAGCACGTGCTGTGGAGCCATAGAAATGTCTTATACTGAACCTGGGGAGGTGGCCCAGCAAGGTCTCTAAGGAGAGA---CCTCTGAGCCGGGA
i canFam3.chr1              C 0 I 429
e mm10.chr7                   3657015 917 + 145441459 I

a score=708773.000000
s hg38.chr19_GL949751v2_alt    125140 330 +   1002683 cctggaccaggcaggggggctaacagctgca------------ggaagggcttcaggaggtgctttaggaggagcatgcatctgcctgtgtgcttaggaagctgggcaggatgcagcAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGACAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGATAGGACGGTGGGGTCCTGATCATCGAGGGTCAGGAGCTGGGGCTTGGCTTGTGAGCCA-------GTATACTGTAGCGCAGCTTCCATGGGGGGACCAGTGTGTATGCCCAGGCTGTCCAGGAGGCAGTGTGCGCGCCCAGGCTGTCCAGGAGGCAG
s panTro4.chr19              59059194 330 +  63644993 cctggaccaggcaggggggctaacagctgca------------ggaagggcttcaggaggtgctttaggaggagcatgcatctgcctgtgtgcttaggaagctgggcaggatgcagcAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGACAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGATAGGACGGTGGGGTCCTGATCATCGAGGGTCAGGAGCTGGGGCTTGGCTTGTGAGCCA-------GTATACTGTAGCGCAGCTTCCATGGGGGGACCAGTGTGTATGCCCAGGCTGTCCAGGAGGCAGTGTGCGCGCCCAGGCTGTCCAGGAGGCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55935923 306 +  60714840 cctggaccaggcagaggggctaacagctgca------------ggaagggcttcaggaggtgctttaggaggagcatgcatctgcctgggtgcttcggaagctgggcaggatgcagcAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGGCAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGACAGGACGGTGGCGTCCTGATCATCAAGGGTCAGGAGCTGGGGCTTGGCTCGTGAGCCAGTATACTGTATACTGTAGCGCAGCTTCCACGGGG-------------------------------GGCAGTGTGTATGCCCAGGCTGTCCAGGAGGCAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102701099 316 - 106955855 cctggaccaggcaggggggctaacagctgca------------ggaggggcttc------------aggaggagcctgcatctgcctgggtgcttaggaagctgggcaggatgcagcAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGGCAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGACAGGACGGTGGGGTCCTCATCATCGAGGGTCAGGAGCTGGGGCTTGGCTTGTGAGCTA-------GTGTACTGTAGCGTAGCTTCCACGGGGGG--CAGTGTGTATGCCCAGGCTGTCCAGGAGGCACTGTGTGCGCCCAGGCTGTCCAGGAGGCAG
i nomLeu3.chr10             C 0 I 319
s rheMac3.chr19              59989135 260 +  64156825 cctggaccaggcaggggggctaacagctgca------------ggaagggcttcaggaggtgctttaggaggagcatgcatct----------ttaggaggctgggcaggaTGCAGCAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGGCAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGACAGGACGG-GGGGTCCTGATCATCCAGGCTCAGGAGCTGGGGCTTGGCTTGTGAGCCA-------GTATCCTGTAGTGCAGCTTCCACGGGG-----------------------------------------------------------AGGCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55013849 260 +  59248254 cctggaccaggcaggggggctaacagctgca------------ggaagggcttcaggaggtgctttaggaggagcatgcatct----------ttaggaggctgggcaggaTGCAGCAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGGCAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGACAGGACGG-GGGGTCCTGATCATCCAGGCTCAGGAGCTGGGGCTTGGCTTGTGAGCCA-------GTATCCTGTAGCGCAGCTTCCACGGGG-----------------------------------------------------------AGGCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47120118 253 +  51301725 CCTGG-------AGGGGGGCTAACAGCTGCA------------GGAAGGGCTTCAGGAGGTGCTTTAGGAGGAGCGTGCATCT----------TTAGGAGGCTGGGCAGGATgcagcagagaggagagaggtgTCCACTCTGCAGCAGGCAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGACAGGACGG-GGGGTCCTGATCATCCAGGCTCAGGAGCTGGGGCTTGGCCTGTGAGCCA-------GTATCCTGTAGCGCAGCTTCCACGGGG-----------------------------------------------------------AGGCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46827312 271 +  50890351 cctggaCCAGGCA-GGGGGCTCACAGCTGCAGGAAGGGCTGCCGGAAGGGCTTCAGGAGGTGCTTTAGGAGGAGCATGCATCT----------TTAGGAGGCTGGGCAGGATGCAGCAGAGAGGAGAGAGGTGTCCACTCTGCAGGAGGCAGTGCCACCAGCTGCAGGGCTGAGATAGTGGGTGTAGCAGGACAGGACGG-GGGTTCCTGATCATCCAGGCTCAGGAGCTGGGGTTTGGCTCGTGAGCCA-------GTATCCTGTAGCGCAGCTTCCACGGGG-----------------------------------------------------------AAGCAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45404771 262 +  49145316 cctggagCAGCCA-GGGGTCTAACAGCTGCA------------GGAGGGGCTTC------------AGGAGGAGTCCGCATCTGCCTGAGTGCTCAGGAGGCTGGGCAGGATGCAGCAGAGAGGAGC-AGGTATCCACTCTGCAGGAGGCAGTGCTGCCGGCTGGAGGGCTGA--------GTGTGGCAGGACAGGAGTGGGGGTTCCTGATCATGGAGGGTCAGGAGCTGGCACTTGGCTCGTGAGCCA-------GGAT-CTGCAGCGTAGCTTCCACAGGG------------------------------AGGTAGTGTGCCCC---------------AGCCTG
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I

a score=501838.000000
s hg38.chr19_GL949751v2_alt    125470 188 +   1002683 TGTGCGCGCCCAGGCTGTCCAGGTCCAAGTCTTGGCAttgtcctttctgtg-----ccttcatctgggaaacggcaatagtcacgattatacctactatgtagggttatttggaagactaaatcatcctcataaagctcttggaacagtttctggcccaacagaagcattaattttttt-------------tttttttctttttt
s panTro4.chr19              59059524 188 +  63644993 TGTGCGCGCCCAGGCTGTCCAGGTCCAAGTCTTGGCAttgtcctttctgtg-----ccttcatctgggaaacggcagtagtcacgattatacctactatgtagggttatttggaagactaagtcatcctcataaagctcttggaacagtttctggcccaacagaagcattaattttttt-------------tttttttctttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55936229 189 +  60714840 TGTGTGTGCCCAGGCTGTCCAGGTCCAAGTCTTGGCAttgtcctttctgtgcctt-ccttcatctgggaaacggcaatagtcacgattatacctactatgtagggttatttggaagactaaatcatcctcgtaaagctcttggaacagtttctggcccaacagaagcattaa---tttt-------------tttttttctttttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102701734 191 - 106955855 TGTGTGCGCCCAGGCTGTCCAGGTCCAAGTCTTGGCAttgtccttgctgtgcatt-ccttcatctgggaaacggcaatagtcacgattatacccaccgtgtagggttatttggaagactaaatcatcctcataaagctgttggaacagtttctggcccaagagaagcattaa-tttttt-------------tttttttctttttt
i nomLeu3.chr10             I 319 C 0
s rheMac3.chr19              59989395 190 +  64156825 CGTGTGCGCCCAGGCTGTCCGGGTCCAAGTCTTGGCAttgtcctttctgtgccttcccttcatatgggaaatggcaataatcacaattatacctaccatataggtttatttggaagactaaatcattcttacgaagctattggaacagtttctgacccaacagaagcattAA---tttt-------------tttttttctttttt
i rheMac3.chr19             C 0 I 347
s macFas5.chr19              55014109 190 +  59248254 CGTGTGCGCCCAGGCTGTCCGGGTCCAAGTCTTGGCAttgtcctttctgtgccttcccttcatatgggaaatggcaataatcacaattatacctaccatataggtttatttggaagactaaatcattcttacgaagctattggaacagtttctgacccaacagaagcattaa---tttt-------------tttttttctttttt
i macFas5.chr19             C 0 I 10
s papAnu2.chr19              47120371 190 +  51301725 CATGTGCGCCCAGGCTGTCCGGGTCCAAGTCTTGGCATTGTCTTTTCTGTACCTTCCCTTCATCTGGGAAATGGCAATAATCACGATTATACCTACCATATAGGTTTGTTTGGAAGACTAAATCATTCTTACGAAGCTATTGGAACAGTTTCTGACCCAACagaagcattaa---tttt-------------tttttttttttttt
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46827583 203 +  50890351 CGTGTGCGCCCAGGCTGTCCGGGTCCAAGTCTTGGCAttgtcctttctgtgccttcccttcatctgggaaatggcagtaatcacgattatacctaccatataggtttatttggaagactaaatcattcttatgaagctattggaacagtttctgacccaacagaagcattaa---ttttatttttatttttatttttttttttttt
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45405033 172 +  49145316 ------------------CCAGGTCCAAGTTTTGGCAttgtcttttctgtgcttg-ccttcatctgggaaatggcagtgat-atgatgataactaccatacagggttatttggaagagcaacttactatggcagagctcttggaacagtttctggcccaacagaggcattcg-attttt-------------tttttttttttttt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I

a score=439776.000000
s hg38.chr19_GL949751v2_alt    125658 210 +   1002683 gagacagagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagctgaatgcaacatccgcctcctgggttcaagcgattctcctgccgcagcctactgagtagctgggattacaggcgcctgccaccacgccaggctaatttttatatttttaatagagatggggttttgccatgttggtcaggcaggtcttgaactccg
s panTro4.chr19              59059712 210 +  63644993 gagacagagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctgaatgcaacatccgcctcctgggttcaagcgattctcctgccgcagcctactgagtagctgggattacaggcacctgccaccacgccaggctaatttttgtatttttaatagagatggggttttgccatgttggtcaggcgagtcttgaactcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55936418 209 +  60714840 gagacagagtcttgctctgtcacccaggctggagtgcagtagtgcgatct-ggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctactgagtggctggtattacaggcgcctgccaccacgccaggctaatttttatatttttaatagagatggggttttgccatgttggtcaggcgggtctcaaacccct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102701925 209 - 106955855 gagacagagtcttgctctgtcacccaggctggtgtgtagtagtgcgatct-ggctcgctgcaacctccacctcccgggttcaagcgattctcctgcctcaccctactgagtagctgggatcacaggcgcctgccaccacgccaggctaatttttgtgattttcatagagatggggttttgccatgttggtcaggcgggtctcgaactcct
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55014309 209 +  59248254 gagatggagtcttgctctgtcaccgaggctggagtgcagtggtgccatct-ggctcactgcaagctctgcctcccaggttcaagtgattctcctgcctcagcctactgagtagctgggactacagatgcctgccaccacgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggcgggtctcgaactcct
i macFas5.chr19             I 10 C 0
s papAnu2.chr19              47120562 209 +  51301725 gagatggagtcttgctctgtcactgaggctggagtgcagtggtgccatct-ggctcactgcaagctccacctcccaggttcaagtgattctcctgcctcagcctactgagtagctgggactacagatgcctgccaccacgcccagctagtttttgtatttttagtagagatggggtttcaccatgttggtcaggtgggtctggaactcct
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46827787 209 +  50890351 gagatggagtcttgctctgtcaccaaggctggagtgcagtggtgccatct-ggctcaccgcaagctccgcctcccaggttcaagtgattctcctgcctcagcctactgagtagctgggactacagatgcctgccaccacgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggcgggtctcgaactcct
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45405205 203 +  49145316 ----gagagtcttg--ctgttacccaggctggagtgcagtcgttcagtctcagttcactgcagtctccacctcccgggttcaagtgagtctcctgcctcagcctcccaagtagctgggattacaggtgccaaccacc-cacctggttgatttttgtatttttagaagagatggggtttcaccatgtgggtcaggcagggcttgaactcct
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I
e rheMac3.chr19              59989585 347 +  64156825 I

a score=1174031.000000
s hg38.chr19_GL949751v2_alt    125868 399 +   1002683 aacctcaggtgatccacccacctcgacctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccCAAATTTTAGAAGTA-GGTGGACAGGATATTTATAGTGCGTGCATTTTTCTGGAAAAA-GGGAAACAGCAGCTTTGAGATTTTCAGAA-GGGGTCCATATCTTTTAACACCACCAACAACAAAAATGAATCGCTGGGGTGGGTGGTCGGGAACCATGGCAAGGTTTGGAGTAGAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCTGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGCAGGAGAGGACAGGCCTGGGCTGTGTGGGACATGGTGGCACGACAGGGAAGGGAGCCATCCAGTGGGGTTTAGAAGCAGGAC
s panTro4.chr19              59059922 399 +  63644993 aacctcaggtgatccacccacctcgacctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccCAAATTTTAGAAGTA-GGTGGACAGGATATTTATAGTGCGTGCATTTTTCTGGAAAAA-GGGAAACAGCAGCTTTGAGATTTTCAGAA-GGGGTCCATATCTTTTAACACCACCACCAACAAAAATGAATCACTGGGGTGGGTGGTCGGGAACCATGGCAAGGTTTGGAGTAGAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCTGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGCAGGAGAGGACAGGCTTGGGCTGTGTGGGACATGGTGGCACGACAGGGAAGGGAGCCATCCAGTGGGGTTTAGAAGCAGGAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55936627 399 +  60714840 aacctcaggtgatccacccgcctcgacctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccCAAATTTTAGAAGTA-GGTGGATGGGATATTTATAGTGCGTGCATCTTTCTGGAAAAA-GGGAAACAGCAGCTTTGAGATTTTCAAAA-GGGGTCCATATCTGTTAACACCACCACCAACAAAAATGAATCGCTGGGGTGGGTGGTCGGGAGCCATGGCAAGGTTTGGAGTAGAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCCGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGCAGGAGAGGACAGGCCTGGGCTGTGTGGGGCATGGTGGCGTGACAGGGAAGGGAGCCATCCAGTGGGGGTTACAAGCAGGAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102702134 400 - 106955855 aacctcaggtgatccacccgcctcgacctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccCAAATTTTAGAAGTA-GGTGGACAGGATATTTATAATGTGTGCATTTTTCTGGAAAAA-GGGAAACAGCAGCTTTGAGGTTTTCAAAATGGGTTCCATATCTTTTAACACCACCACCAACAAAAATGAATTGCTGGGGTGGGTGGTCGGGAACCATGGCAAGGTTTGGAGTAGAGAAGGAACAACGTGACTTAATTGGAAAGGTCCCCCGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGCAGGAGAGGACGGGCCTGGGCTGTGTGGGGCATGGTGGCATGACAGGGAAGGGAGCCATCCAAGGGGGGTTAGAAGCACGAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59989932 401 +  64156825 aacctcaggtgatctgcccgccttggcctcccgaagtgctgggattacaggtgtgagccaccgtgcctggccCAAATTTTAGAAGTATGGTGGACAAGATATTTATAGTGCATGCATTTTTCTGGAAAAAGGGGAAACAGCAGCTTTGAGATTTTCAAAA-GGGGTCCATACCTTTTAACATCACCACCAACAAAAAGGAATTGCTGGGGTGGGTGGTCGGGAACCGTGGCAAGGTTTGGAGTAGAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCCGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGTAGGAGAGGACAGGCTTGGGCTGCGTGGGGCATGGTGGCGTGACAGGGAAAGGAGCCATCCAAGGTGGGTTAGAAGCAGGAC
i rheMac3.chr19             I 347 C 0
s macFas5.chr19              55014518 401 +  59248254 aacctcaggtgatctgcccgccttggcctcccgaagtgctgggattacaggtgtgagccaccgtgcctggccCAAATTTTAGAAGTATGGTGGACAAGATATTTATAGTGCATGCATTTTTCTGGAAAAAGGGGAAACAGCAGCTTTGAGATTTTCAAAA-GGGGTCCATACCTTTTAACATCACCACCAACAAAAAGGAATTGCTGGGGTGGGTGGTCGGGAACCGTGGCAAGGTTTGGAGTAGAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCCGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGTAGGAGAGGACAGGCTTGGGCTGCGTGGGGCATGGTGGCGTGACAGGGAAAGGAGCCATCCAAGGTGGGTTAGAAGCAGGAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47120771 401 +  51301725 aacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggcccaaattttAGAAGTATGGTGGACAAGATATTTATAGTGCAtgcatttttctggaaaaagggGAAACAGCAGCTTTGAGATTTTCAAAA-GGGGTCCATACCTTTTAACATCACCACCAACAAAAAGGAATTGCTGGGGTGGGTGGTCGGGAACCGTGGCAAGGTTTGGAGTAGAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCTGGGGCTGGTGAGGACAGGATAGAGAGAGGGTGGTCTGGGTAGGAGAGGACAGGCTTGGGCTGcgtggggcgtggtggcgtgaCAGGGAAAGGAGCCATCCAAGGTGGCTTAGAAGCAGGAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46827996 396 +  50890351 aacctcaggtgatctgcccgcctcagcctcccgaagtgctgggattacaggtgtgagccaccgtgcctggccCAAATTTTAGAAGTATGGTGGACAAGATATTTATAGTGCATGCATTTTTCTGGAAAAAGGGGAAACAGCAGCTTTGAGATTTTCAAAA-GGGGTCCATACCTTTTAACATCACCACCAACAAAAAGGAATTGCTGGGGTGGGTGGTCGGGAACCGTGGCAGGGTTTG-----GAGAAGGAACAACATGACTTCATTGGAAAGGTCCCCCGGGGCTGGTGAGGACAGGATAGAGGGAGGGTGGTCTGGGTAGGAGAGGACAGGCTTGGGCTGCGTGGGGCATGGTGGCGTGCCAGGGAAAGGAGCCATCCAAGGTGGGTTAGAAGCAGGAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45405408 370 +  49145316 gacctcaggtgatccacccacctcagcctcccaaagtactgggattacaggcttgagccaccgcacccagccCAAA-TTTAGAAGTACTGTGGACAGGAAA--CATACTGTGTGCATTTTTGTGGAGAAA-GGGAAACA--AGCTTTGAGATTTTCAAGA-GGGGTTCATACCTTTTGACACCACCACCAGCAAAAATGAATCACTGGGGTGGGCGGTCAGGAACTATGGCAAGGTTTGAAGTAGAGAAGGAACAACCTGACGTCATTAGAAAGGTCCCCTGGGGC---TGAGGACAGGATAGAGGGTGGGTGGTCTGGGCAGGAGAGGACAGGCCCGGGCTGTGTGGGGCATGGTGGCATGACAGG----------------------TTAGAAGCAGGAC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I

a score=285119.000000
s hg38.chr19_GL949751v2_alt    126267 117 +   1002683 GGATAgctgggcgtggtggctcacacctgtaatcccagctcttagggaggcagaggcgggaggatagcttgagcccaggagtttgagacctgcctgggcgatatagcgagacAGAAT
s panTro4.chr19              59060321 117 +  63644993 GGATAgctgggcgtggtggctcacacctgtaatcccagctcttagggaggcagaggcgggaggatagcttgagcccaggagtttgagacctgcctgggcgatatagcgagacAGGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55937026 117 +  60714840 GGATAgccgggcacggcggctcacatctgtaatcccagctcttagggaggcacaggcgggaggatagcttgagcccaggagtttgagacctgcttgggcgatatagcgagacAGGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102702534 117 - 106955855 AGATAgccgggtgcggtggctcacgcctgtaatcccaactcttagggaggcagaggcgggagggtagcttgagcccaagagtttgagacctgcttgggcgatatagcaagacAGGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59990333 117 +  64156825 GGATAgccgggcgcggtggctcacacctgtgatcctagctcttagggaggcagaggcaggaggataacttgagcccaggagtttgagacctgcctgggcgatacagcaaaacAGGAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55014919 117 +  59248254 GGATAgccgggcgcggtggctcacacctgtgatcctagctcttagggaggcagaggcaggaggataacttgagcccaggagtttgagacctgcctgggcgatacagcaaaacAGGAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47121172 117 +  51301725 ggatagccgggcgcggtggctcacacctgcgatcccagctcttagggaggcagaggcaggaggataacttgagcccaggagtttgagacctgcctgggcgaTACAGCAAAACAGGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46828392 117 +  50890351 GGATAgccgggcgcggtggctcacacctgtgatcccagctcttagggaggcagaggcaggaggataacttgagcccaggagtttgagacctgcccgggcgatacagcaaaacAGGAT
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I
e calJac3.chr22              45405778   0 +  49145316 C

a score=593260.000000
s hg38.chr19_GL949751v2_alt    126384 227 +   1002683 GGATAAGCCTTGGCGACTGACTCGTTGTGGAGAGTCCAGCACAGGGCTGGGGTTTGGGACAGCTGCACGTGGCTGGAGGAGATGGGAGGAACCAGCCCTGACTTTGGGGAACAGAAGCCTGCTGTAACCTTTGTAATAGGAAACGAGGCTGTGGCTGCGGGGCTGGAGACCCAACCTACCTGTTTCCAGCAAGGAGACTGAAGCCTAGCCGGGCTGGGCCCACCCCG
s panTro4.chr19              59060438 227 +  63644993 GGATAAGCCTTGGCGACTGACTCGTTGTGGAGAGTCCAGCACAGGGCTGGGGTTAGGGACAGCTGCACGTGGCTGGAGGAGATGGGAGGAACCAGCCGTGACTTTGGGGAACAGAAGCCTGCTGTAACCTTTGTAATAGGTAACGAGGCTGTGGCTGCAGGGCTGGAGACCCAACCTACCTGTTGCCAGCAAGGAGACTGAAGCCTAGCCGAGCTGGGCCCACTCCG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55937143 227 +  60714840 GGATAAGCCTTGGCGACTGACTTGTTGTGGAGAGTCCAGCACAGAGTTGGGGTTAGGGACAGCTGCACGTGGCTGGAGGAGATGGGAGGAACCAGCCCTGACTTTGGGGAACAGAAGCCTGCTGTAACCTTTGTAATAGGAAACGACGCTGTGGCTGCAGGGCTGGAGACCCCACCTACCTGTTGTCAGCAAGGAGACTGAAGCCTAGCCGGACTGGGCCCACCCCG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102702651 177 - 106955855 GGATAAGCCTTGGTGACTGACTCGTTGTGGAGAGTCCAGCACAGGGCTGGGGTTAGGGACAGCTGCACGTGGCTGGAGGAGATGGGAGGAACCAGCCCTGACTTTGGGAAACAGATGCCTGCCGTAACCTTTGTAATAGGAAACGAGGCTGT--------------------------------------------------GCCTAGCCGGGCTGGGCCCACCCCG
i nomLeu3.chr10             C 0 M 981
s rheMac3.chr19              59990450 224 +  64156825 GGATAAGCCTTGGCAACTGATGCATTGTG--GAGTCCCGCACAGGGCTGGGGTTAGGGACAGCTGCACGTGGCCGGAGGAGAT-GGAGGAACCAGCCCTGACTTTGGGGAACAGAAGCCTGCTGTAACCTTTGTAATAGGAAACGAGGCTGTGGCTACAGGTCTGGAGACCCAGCCTACCTGTCGCCAGCAAGGAGACTGAAGTCTAGCAGGGCTGGGCTCACCCTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55015036 224 +  59248254 GGATAAGCCTTGGCAACTGATGCTTTGTG--GAGTCCCGCACAGGGCTGGGGTTAGGGACAGCTGCACGTGGCCGGAGGAGAT-GGAGGAACCAGCCCTGACTTTGGGGAACAGAAGCCTGCTGTAACCTTTGTAATAGGAAACGAGGCTGTGGCTACACGTCTGGAGACCCAGCCTACCTGTCGCCAGCAAGGAGACTGAAGTCTAGCAGGGCTGGGCTCACCCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47121289 224 +  51301725 GGATAAGCCTTGGCGACTGACGCATTGTG--GAGTCCCGCACAGGGCTGGGGTTAGGGACAGGTGCACGTGGCCAGAGGAGAT-GGAGGAACCAGCCCTGACTTTGGGGAACACAAGCCTGCTGTAACCTTTGTAATAGGAAACAAGGCTGTGGCTACAGGTCTGGAGACCCAGCCTACCTGTCGCCAGCAAGGAGACTGAAGCCTAGCAGGGCTGGGCTCACCCGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46828509 224 +  50890351 GGATAAGCCTTGGCGACTGACGCATTGTG--GAGTCCCGCACAGGGCTGGGGTTAGGGACAGCTGCACGTGGCCGGAGGAGAT-GGAGGAACCAGTCCTGACTTTGGGGAACAGAAGCCTGCTGTAACCTTTGTAATAGGAAACGAGGCTGTGGCTACAGGTCTGGAGACCCAGCCTACCTGTCGCCAGCAAGGAGACTGAAGCCTAGCAGGGCTGGGCTCACCCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45405778 210 +  49145316 GGATAAGCCTTGGTGACTAAAGCATTGTGGAGAGGACAGCACAGGGCT-GGGTTAGGGACAGCTGCCCATGGCCAGAGGAGAT-GGAGGAACCAGGTCTGACTTTGGAGAACAGAAGCCTGCTGTAGCCTTTGTAATAGGAAAGGAGGCTGTGGTGGTAGGGCTGGAGGC---------------TCAGCAAGGAGACTGAATCCTAGCAGGGCTGGGCCCATCCCA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I

a score=906292.000000
s hg38.chr19_GL949751v2_alt    126611 405 +   1002683 ATTCCAGTCACCCCATGCCAGTCACAGGCAGACAGCTGAGCATGTAGACCTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAGCGTGTAGGTGTCCCTAGTGAAGGAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCGCACTGTACAT-ATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTATTTTGAAAATCTCGGCGTAGTATTCCATGCTGCAGAGTCCCACTCACGAGACGTTCCTCTGCTGATGAATGCGTC-GTGGTCTCCGATTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATTGTGGGGAGTGGGTCGTTGGCCCTCCACGGCCCCCAAACAGGGCAGGTGAGAGCATCTGGGGCCTGTGTC
s panTro4.chr19              59060665 405 +  63644993 ATTCCAGTCACCCCATGCCAGTCACAGGCAGACAGCTGAGCATGTAGACCTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAGCGTGTAGGTGTCCCTAGTGAAGGAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCGCACTGTACAT-ATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTATTTTGAAAATCTCGGCGTAGTATTCCATGCTGCAGAGTCCCACTCACGAGACGTTCCTCTGCTGATGAATGCGTC-GTGGTCTCCGATTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATTGTGAGGAGTGGGTCGTTGGCCCTCCACGGCCCCCAAACAGGGCAGGTGAGAGCATCTGGGGCCTGTGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55937370 406 +  60714840 ATTCCAGTCACCCCATGCCAGTCACAGGCAGACAGCTGAGCATGTAGACCTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAACGTGTAGGTGTCCCTAGTGAAGGAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCACACTGTACAT-ATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTATTTTGAAAATCTCTGCGTAGTATTCCATGCTGCAGAGTCCCACTTACTAGACGTTCCTCTGCTGATGAATGCGTCAGTGGTTTCCAATTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATCGTGAGGAGTGGGTCGTTGGCCCTCCACGGCCCCCAGACAAGGCAGGTGAGAGCATCTGGGGCCTGTGTC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59990674 406 +  64156825 ATCCCAGTCACCCCATGCCAGTCAGAGGCAGAGAGCTGAGCATGTAGA-CTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAGCATGTAGGTGTCCCTAGTGAAGCAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCGCACTGTACATAATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTGTTTTGAAAATCTCCGTGCAGTATTCCACGGTGCAGAGTCCCACTTACTAGACGTTCCTCTGCTGATGAATGTGTCAGTCGTTTCCAGTTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATCATGAGGAGTGGCTCATTGGCCCTCCACAGCCCCCAAGCAGGGCAGGCGAGCGCATCTGGGACCTGTGTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55015260 406 +  59248254 ATCCCAGTCACCCCATGCCAGTCAGAGGCAGAGAGCTGAGCATGTAGA-CTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAGCATGTAGGTGTCCCTAGTGAAGCAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCGCACTGTACATAATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTGTTTTGAAAATCTCCGTGCAGTATTCCACGGTGCAGAGTCCCACTTACTAGACGTTCCTCTGCTGATGAATGTGTCAGTCGTTTCCAGTTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATCATGAGGAGTGGCTCATTGGCCCTCCACAGCCCCCAAGCAGGGCAGGCGAGCGCATCTGGGACCTGTGTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47121513 405 +  51301725 ATCCCAGTCACCCCATGCCAGTCAGAGGCAGACAGCTGAGCATGTAGA-CTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAGCATGTAGGTGTCCCTAGTGAAGCAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCGCACTGTACAT-ATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTGTTTTGAAAATCTCCGTGCAGTATTCCACGGTGCAGAGTCCCACTTACTAGACGTTCCTCTGCTGATGAATGCGTCAGTCGTTTCCAGTTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATCATAAGGAGTGGCTCATTGGCCCTCCACAGCCCCCAAGCAGGGCAGGCAAGCGCATCTGGGACCTGTGTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46828733 405 +  50890351 ATCCCAGTCACCCCATGCCAGTCAGAAGCAGACAGCTGAGCATGTAGA-CTCCTGCCTCCTTCAAGACAGGCGGGAGCTCTCCCAGCATGTAGGTGTCCCTAGTGAAGCAGCGTGTACTATTGGCACATCCTTTGACAAAAATGGTAGCGCACTGTACAT-ATTCTGCAGGTTGGCGTTTACTTCTGTAGTATGTCACGAACTTGTGTTTTGAAAATCTCCATGCAGTATTCCATGGTGCAGAGTCCCACTTACTAGACGTTCCTCTGCTGATGAATGCGTCAGTCATTTCCAGTTGTTTCCCTACAGTTTGATGCTTTTACCTGTCATGGGTAGATCATGAGGAGTGGCTCATTGGCCCTCCACAGCCCCCAAGCAGGGCAGGCGAGCGCATCTGGGACCTGTGTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45405988 365 +  49145316 ---CCCGTCACTCCATGCCAGTCAGAGGCAGACGGCCGAGCATGTAGTCCTCCTGCCTCCTTCAAGACAGGCGGGGGCTCTCCC-------------------------AGAGTGTACTGTTGGCTCATCCTCTGACAAACA--GTAGCGCACTGTAGGT-GTTCTGCAGGTTGGCATTTTCCTCTGTAGTAGGCCACAAACTTGTGTTTTGAAAATCTCTGCGCCGTATTCCATGGTGTAGAGTCCCACTTATTAGACGTTCATCTGCTGATGAGTGCGTCAGTGGTTTC---------CCCCTCAGGTTGATGCTTTTACCTTTCATGGGTAGATCACGAGTAGTGGGTCACTGGCCCTCCATAGTCTCCCAACA--GCAGGCGACAGCATGTGGGGCCTGCGTC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3657015 917 + 145441459 I
e canFam3.chr1               19617913 429 - 122678785 I
e nomLeu3.chr10             102702828 981 - 106955855 M

a score=112262.000000
s hg38.chr19_GL949751v2_alt    127016 45 +   1002683 AGGCTGCACTTGCTCCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------CT
s panTro4.chr19              59061070 45 +  63644993 AGGCTGCACTTGCTCCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------CT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55937776 52 +  60714840 AGGCTGCACTTGCTCCTGCAGCCCCAG---TGCTCAGGCC---AGGCCTCGCTTCCCT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59991080 45 +  64156825 AGGCTGCACTTGCTGCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------CT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55015666 45 +  59248254 AGGCTGCACTTGCTGCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------CT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47121918 45 +  51301725 AGGCTGCACTTGCTGCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------CT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46829138 45 +  50890351 AGGCTGCACTTGCTGCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------CT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45406353 45 +  49145316 AGGATAAGCTTGCTCCTGCAGCCCAAG---TGCTCAGGCC---AGGCCT-------TT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3657932 54 + 145441459 AGGCTGAACATTTTTATGCAGCTCAGTCTCTGCTCAGGTCCTGAGACTTAAC----CC
i mm10.chr7                 I 917 C 0
e canFam3.chr1               19617913 429 - 122678785 I
e nomLeu3.chr10             102702828 981 - 106955855 M

a score=869051.000000
s hg38.chr19_GL949751v2_alt    127061 265 +   1002683 TGTTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATTGAGGACCCTGTGCCAACGCTGCACCTGACCGAGCGAGGTGAGGGACCCAGGATGGTGGGGAAGCAGCGGGCCAAAGAGGAGGGGCT-GCCCCTGACCCATCCTCACCACTGAGGGGGCCGGA----------CCCCCA--CCCTCCCCACAGACATCATCCTGAGCAGTACATCAGCACCTCCGGCCTCAGCCCAGCCGCC
s panTro4.chr19              59061115 265 +  63644993 TGTTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATTGAGGACCCTGTGCCAACGCTGCACCTGACCGAGCGAGGTGAGGGACCCAGGATGGTGGGGAAGCAGCGGGCCAAAGAGGAGGGGCT-GCCCCTGACCCATCCTCACCACTGAGGGGGCCGGA----------CCCCCT--CCCTCCCCACAGACATCATCCTGAGCAGTACATCAGCACCTCCGGCCTCAGCCCAGCCGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55937828 266 +  60714840 TGTTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATCGAGGACCCTGTGCCAACGCTGCACCTGACTGAGCGAGGTGAGGGACCCAGGATGGTGGGGAAGCAGTGGGCCAAAGAGGAGGGGCT-GCCCCTGACCCATCCTCACCACTGAGGGGGCCGGA----------CCCCCAC-CCCTCCCCACAGACATCATCCTGAGCAGCACATCAGCACCTCCGGCCTCAGCCCAGCCGCC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59991125 266 +  64156825 CGTTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATTGAGGACCCTGTGCCAACGCTGCACCTGACTGAGCGAGGTGAGGAACCCAGGATGGTGGGGAAGCAGTGGGCCAAAGAGGAGGGGCTGGCCCCTGACCCATCCTCACCACTGA-GGGGCCGGA----------CCCCCAC-CTCTCCCCACAGACATCATCCTGAGCAGCACATCAGCACCTCCGGCCTCAGCTCAGCCACC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55015711 266 +  59248254 CGTTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATTGAGGACCCTGTGCCAACGCTGCACCTGACTGAGCGAGGTGAGGAACCCAGGATGGTGGGGAAGCAGTGGGCCAAAGAGGAGGGGCTGGCCCCTGACCCATCCTCACCACTGA-GGGGCCGGA----------CCCCCAC-CTCTCCCCACAGACATCATCCTGAGCAGCACATCAGCACCTCCGGCCTCAGCTCAGCCACC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47121963 265 +  51301725 CATTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATTGAGGACCCTGTGCCAACGCTGCACCTGACTGAGCGAGGTGAGGAACCCAGGATGGTGGGGAAGCAGTGGGCCAAAGAGGAGGGGCTGGCCCCTGACCTATCCTCACCACTGA-GGGGCCGGA-----------CCCCAC-CTCTCCCCACAGACATCATCCTGAGCAGCACATCAGcacctccagcctcagctcagcCACC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46829183 267 +  50890351 CGTTTCCTCCC--CAGGCCCCTGAGC---CTCTGAGCTCCTTGAAGTCCATGGCGGAACGGGCAGCCATCAGCTCTGGCATTGAGGACCCTGTGCCAACGCTGCACCTGACTGAGCGAGGTGAGGAACCCAGGATGGTGGGGAAGCAGTGGGCCAAAGAGGAGGGGCTGGCCCCTGACCCATCCTCACCACTGA-GGGGCCGGA----------CCCCCCCGCTCTCCCCACAGACATCATCCTGAGCAGCACATCAGCACCTCCGGCCTCAGCTCAGCCACC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45406398 265 +  49145316 GGTTTCCTCCC--CAGGCCCCAGAGCAAACTTTGAGCTCCTTGAAGTCCATGGCAGAACGGGCAGCCATCAGCTCTGGCATTGAGGATCCCGTGCCAACGCTGCACCTGACTGAGCGAGGTGAGGGTCCCGGGATGGTGGGGAAGCAGTGGGCCAAAGAGGAGGGACTGGCCC--GACCCATCCTCACCACTGAGGGGGCCA-------------CCCCCC-CTTTCCCCACAGACATCATCCTCAGTAGCACATCAGCACCTCCGGCCTCAGCCCAGCCACC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3657986 255 + 145441459 CTTTCTCTTCC--CAGGCCCCTGAAC---CACTCAGCTCTCTGAAATCCATGGCAGAACGGGCAGCTATCAGCTCTGGTATTGAGGACCCTGTGCCAACGTTACACCTAACTGATCGAGGTGACAGTTATGGGATTGTGGGGAGGGCAAAGGCCAAAAAGGAG---CTGACCC------CATCCTCATCATTGA-AGTGCTTAA----------TGGCC---TCTCCCCTGCAGACATCATCCTGAGCAGCACATCAGCACCACCCACCTCATCCCAGCCACC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19618342 273 - 122678785 TGTCTTCTCCCCACAGGCCCCGGAAC---CTCTGAGCTCTCTCAAGTCCATGGCAGAGCGGGCAGCCATCAGCTCCGGCATCGAGGATCCTGTGCCAACGCTGCACCTAACCGAGCGAGGTGAGGGTCTGGGTGAGGCGGGGGCGGGGGCGGCCAGGCAGGTGTAACG-GCAC--ACTCCAGCCTCACCG--GA-GGGCCTGGCCCTGCCACACCCCCCAC-ACCGCCCTGCAGACATCATCCTGAGCAGCACGTCCGCCCCACCAGCCTCAGCTCAGCCGCC
i canFam3.chr1              I 429 C 0
e nomLeu3.chr10             102702828 981 - 106955855 M

a score=6174823.000000
s hg38.chr19_GL949751v2_alt    127326 1637 +   1002683 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCACTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTATCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCTCACCCCTCTGACTCTGAGCGTATTCGGTGAGGGGCCACAGGGAAGGGGGATGGTC-TGGGACT--TGAGTCTTACGGAGGAGGCAGTG---GCTGAA-CCTGTGAGGCTGTGGGT--AGAGCACCAGGCCCCTGACTTGGGCTCTCCA----CTGAAGGTCAGCACCGCCCTGGGTCTTTCTGTACCACCTCCCCCCG-CAGGG-ATGCATGTCTGAGCACCCTTTTGATCACGACAGGAC----------------------TAGTAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCTCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCACTCCTGGG--------CCCCTGCCCCAAATCCACCTGTCCCCGTCCCCGCCTTCCAGCCCAGAGATGTTAGAACTGCTTGGGTTGACAGCGAGGC--TGGTCCACTGAGGCACACCTCAGCCCCGCTTCCAGTTGCCCACTGGCTCACCC--GCGGCCCCTCCCCAGCCCTGCTCCAGCAGCCC--CAGTCTAGGCCGACCCCACTCTGCTCATCGGC-----ACATTCTCAGGCCTCCCTGGAGACCACTGGGGAGCTGTCCAGCCCCCTCCCAACCCCAGTGAGTCATGAGTGACCTCCACCCTCATCCCCACTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTTCTCCTGATCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCAAGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGCCCTGATGTCCTGCCCCATTCCCCTGGCTCCCCACCCAGTTTGGGGGCCCCCTGATCCCCCTCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTATCTGGCAGCCAAGGCCCTAAAGAAGCAGTCATGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGCCTCTGCTCCCTTGCCTCCACCTTTCAGCTGGCGCAGTCCCTCAGCCTGACCAAGTACT-CCTCCCTCTGgctgtctgctcagcctggaacaccgccctctcatcctccacttggccagctcctaggcctcctgtaggtctcagcccaaatgtc------ccttcctcaaagaaaccttcctggagccacccagcccagtgcctc
s panTro4.chr19              59061380 1639 +  63644993 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCACTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTATCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCTCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGGCCACAGGGAAGGGGGTTGGGC-TGGGACT--CGAGTCTTAGCGAGGAGGCAGTG---GCTGAA-CCTGTGAGGCTGTGGGT--AGAGCACCAGGCCCCTGACTTGGGCTCTCCA----CTGAAGGTCAGCACCGCCCCGGGTCTTTCTCTACCACCTCCCCCCG-CAGGG-ATGCATGTCTGAGCACCCTTTTGATCAGGACAGGAC----------------------TAGTAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCACTCCTGGG--------CCCCTGCCCCAAATCCACCTGTCCCCGTCCCCCGCTTCCAGCCCAGAGATGTTAGAACTGCTTGGGTTGACAGCGAGGC--TGGTCCACTGAGGCACACCTCAGCCCCGCTTCCAGTTGCCCACTGGCTCACCC--GCGGCCCCTCCCCAGCCCTGCTCCAGCAGCCCCTCAGTCTAGGCCGACCCCACTCTGCTCGTCGGC-----ACATTCTCAGGCCTCCCTGGAGACCACTGGGGAGCTGTCCAGCCCCCTCCCAACCCCAGTGAGTCATGAGTGACCTCCACCCTCATCCCCACTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTTCTCCTGACCAGCATT-GGTATGTTCTGTGGCCCCAGCCCCATCTCCAAGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGCCCTGATGTCCTGCCCCATTCCCCTGGCTCCCCACCCAGTTTGGGGGCCCCCTGATCCCCCTCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCATGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTCGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGcctctgctccctcgcctccacctttcagctggcgcagtccctcagcctgaccaagtact-cctccctctggctggctgctcagcctggaacaccgccctctcatcctccacttggccagctcctaggcctcctgtaggtctcagcccaaatgtc------ccttcctcaaagaaaccttcctggagccacccagcccagtgcctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55938094 1635 +  60714840 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCACTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTATCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCTCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGGCCACAGGGAAGGGGGATGGGC-TGGGACT--CGAGTCTTAGCGAGGAGGCAGTG---GCTGAA-CCTGTGAGGCTGTGGGT--AGAGCACCAGGCCCCTGACTTGGGCTCTCCA----CTGAAGGTCAGCACCACCCCGGGTCTTTCTGTACCACCTCCCCCCG-CAGGG-ATGCATGTCTGAGCACCCTTTTGATCAGGACAGGAC----------------------CAGTAGGCAG------CTGGCGC-----TGA--CCTACCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCACTCCTGGG--------CCCCTCCCCCAAATCCACCTGTCCCTGTCCCC-CCTTCCAGCCCAGAGGTGTTAGATCTGCTTGGGTTGGCAGCGAGGC--TGGTCCACTGTGGCACACCTCAGCCCCGCTTCCAGTTGTTCACCGGCTCACCC--GCGGCCCCTCCCCAGCCCTGCTCCAGCAGCCCCTCAGTCTAGGCTGACCCCACTCTGCTCGTCGGC-----ACATTCTCAGGCCTCCCTGGAGACCACTGGGGAACTGTCCAGCCCCCTCCCAACCCCAGTGAGTCATGAGTGACCTCCACCCTCATCCCCACTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTT---CTGACCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCAAGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGCCCTGATGTCCTGCCCCATCCCCCTGGCTCCCCACCCAGTTTGGGGGCCCCCTGATCCCCCTCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTCGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGGTGGcctctgctccctcgcctccacctttcagctggcgcagtccctcaacttgaccaagttct-cgtccctctggctgtctgctcagcctggaacactgccctctcatcctccacttggccagctcctaggcctcctgtaggtctcagcccaaatgtc------ccttcctcaaagaagccttcctggagccacccagcccagtgcctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102703809 1635 - 106955855 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCGCTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTATCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCTCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGGCCACAGGGAAGGGGGATGGGC-TGGGACT--CGAGTCTTAGCGAGGAGGCAGTG---GCCGAA-CCTGTGAGGCTGTGGGT--AGAGCGCCAGGCCCCTGACCTGGGCTCTCCA----CTGAAGGTCAGCACCGCCCCGGGTCTTTCTGTACTACCTTCCCCCG-CAGGG-ATGCATTTCTGAGGACCCTTTTGATCAGGACAGGAC----------------------TAGTAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCACTCCTGGG--------CCCCTCCCCCAAATCAACCTGTCCCTTTCCCCCCTGTCCAGCCCAGAGGTGTTAGAACTGCTTGGGTTGACAGTGAGGC--TGGTCCACTGTGGCACACCTCAGCCCCGCTTCCAGTTGCTCACTGGCTCACCT--GCGGCCCCTCCCCAGCCCTGCTCCAGCAGCCCCTCAGTCTAGGCCAACCCCACTCTGCTCGTCGGC-----ACATTCTCAGGCCTCCCTGGAGACCACTGGGGAACTGTCCAGCCCCCTCTCAACCCCAGTGAGTCATGAGTGATCTCCACCCTCATCCCCACTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTT---CTGACCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCAA-AGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTTAGCCCTGATGTCCTGCCCCATCCCCCTGGCTCCCCACCCAGTTTGGGGGCCCCCTGATCCCCCCCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTCGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCTGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGCCTCTGCTCCCTCGCCTTCACCTTTCAGCCGGCGCAGTCCCTCAGCCGGACCAAGTTCT-CCTCCCTCTGgctgtctgctcagcctggaccaccaccctctcatcctccacttggccagctcctaggcctcctgtaggtcttagcccaaatgtc------ccttcctcaaagaaaccttcctggagccacccagcccagtgcctc
i nomLeu3.chr10             M 981 C 0
s rheMac3.chr19              59991391 1630 +  64156825 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCGCTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCCCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGTCC-CAGGGAAGGGGGGTGGGC-TGGGGCT--CGAGTCTTAGCAAGGAGGCAGTG---GCTAAA-CCTGTGAGGCTGTGGGT--AGAGCGCCAGGCCCCTGACTCGGGCTCTCCA----CTGAAGGTCAGCACCGCCCTGGGTCTTTCTGTACCACCT-CCCCTG-TGGGG-ATGCAGTTCTGAGCACCCTTTTGGTCAGGGCAAGAC----------------------TAGCAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTG--------CCCCCTACC-CCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTAGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTACTCCCAGTCCTGGG----CCCCCCCCCCCGCCAATTCAACCTGTCCCTGTCCCC-GCTTCCAGCCCAAAGGTGTTAGCACTGCTCGGGTTGAGAGCGAGGC--CAGTCCACTGTGGCTCACCCCAGCCCTTCTTCCAATAGCTTACTGGCTAACCCATGGGGTCCCCCCACAGCCCTGCTCCAGCAGCCCCTCAGTCTAGGCCGACCCCACTCCACTCGTCGGC------CATTCTCAGGCCTCCCTGGAGGCCACTGGGGAACTGTCCAACCTCCTCCCAACCCCAGTGAGTCATGAGTGACCTCCACCCTCATCCCCGCTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTTCTCCTGACCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCACGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGCCCTCATGTCCTGCCCCGTCCCCCTGGCTCCCCACCCAGTTTGGGGGCCCCCTGATCCCCCTCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGCCTCTGCGCCCTCGCCTCCACCTTTCAGCcggcgcagtccctcagcctgaccacgttct-cctccctcgggctgtctgctcagcctggaacactgccctctcatcctccacttggccagctcctaggcctcctgtgggtcttagcccaaatgtc------ccttcctc--agacaccttcctggcgccacccagcccggtccctc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55015977 1642 +  59248254 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCGCTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCCCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGTCC-CAGGGAAGGGGGGTGGGC-TGGGGCT--CGAGTCTTAGCAAGGAGGCAGTG---GCTAAA-CCTGTGAGGCTGTGGGT--AGAGCGCCAGGCCCCTGACTCGGGCTCTCCA----CTGAAGGTCAGCACCGCCCTGGGTCTTTCTGTACCACCT-CCCCTG-TGGGG-ATGCAGTTCTGAGCACCCTTTTGGTCAGGGCAAGAC----------------------TAGCAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTAGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCAGTCCTGGG-CCCCCCCCCCCCCCACCAATTCAACCTGTCCCTGTCCCC-GCTTCCAGCCCAAAGGTGTTAGAACTGCTCGGGTTGAGAGCGAGGC--CAGTCCACTGTGGCTCACCCCAGCCCTTCTTCCAATAGCTTACTGGCTAACCCATGGGGTCCCCCCACAGCCCTGCTCCAGCAGCCCCTCAGTCTAGGCCGACCCCACTCCACTCGTCGGC------CATTCTCAGGCCTCCCTGGAGGCCACTGGGGAACTGTCCAACCTCCTCCCAACCCCAGTGAGTCATGAGTGACCTCCACCCTCATCCCCGCTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTTCTCCTGACCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCACGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGCCCTGATGTCCTGCCCCGTCCCCCTGGCTCCCCACCCAGTTTGGGGGCCCCCTGATCCCCCTCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGCGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGCCTCTGCGCCCTCGCCTCCACCTTTCAGCcggcgcagtccctcagcctgaccacgttct-cctccctcgggctgtctgctcagcctggaacactgccctctcatcctccacttggccagctcctaggcctcctgtgggtcttagcccaaatgtc------ccttcctc--agacaccttcctggcgccacccagcccggtccctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47122228 1643 +  51301725 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCGCTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAGGAGGCCGCCTGGCACCACATGCCCCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGCCC-CAGGGAAGGGGGGTGGGC-TGGGGCT--CGAGTCTTAGCAAGGAGGCAGTG---GCTAAA-CCTGTGAGGCTGTAGGT--AGAGCGCCAGGCCCCTGACTCGGGCTCTCCA----CTGAAGGTCAGCACCGCCCTGGGTCTTTCTGTACCACCT-CCCCTG-TGGGG-ATGCAGTTCTGAGCACCCTTTTGATCAGGGCAGGAC----------------------TAGCAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAgggcccccggggcagcctcgggccccccggcttcgccgccaccgccgccgtcccccctcgggcTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCAGTCCTGGG--ccccccccGCCCCGCCAATTCAACCTGTCCCTGTCCCC-ACTTCCAGTCCAAAGGTGTTAGAACTGCTCAGATTGAGAGCGAGGC--CAGTCCACTGTGGCTCACCCTAGCCCTGCTTCCAATAGCTTACTGGCTAACCCATGGGGTCCCCCCACAGCCCTGCTGCAGCAGCCCCTCAGTCTAGGCCGACCCCACTCCACTCGTCGGC------CATTCTCAGGCCTCCCTGGAGGCCACTGGGGAACTGTCCAACCTCCTCCCAACCCCAGTGAGTCATGAGTGACCTCCACCCTCATCCCCACTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACAttagtttttcttccttctcaaagCTTCTCTGAAAGCAATTTTCACCTCctgtctcattttccttctcctgaCCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCACGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGccctgatgtcctgccccgtccccctggctccccacccagtttgggggccccctgatccccctctccactgttcctcccccaGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCCCGCCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGCCTCTGCGCCCTCGCCTCCACCTTTCAGCCGGTGCAGTCCCTCAGCCTGACCACGTTCT-CCTCCCTCGGGCTGTCTGCTCAGCCTGGAACACTGCCCTCTCATCCTCTACTTGGCCAGCTCCTAGGCCTTCTGTGGGTCTTAGCCCAAATGTC------CCTTCCTCAAAGACACCTTCCTGGCGCCACCCAGCCCAGTGCCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46829450 1629 +  50890351 CCTGCAGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGTCCACTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCCCACCCCTCTGACTCTGAGCGTATCCGGTGAGGGCCC-CAGGGAAGGGGGGTGGGC-TGGGGCT--CGAGTCTTAGCAAGGAGGCAGTG---GCTAAA-CCTGTGAGGCTGTGGGT--AGAGCGCCAGGCCCCTGACTCGGGCTCTCCA----CTGAAGGTCAGCACCGCCCTGGGTCCTTCTGTACCACCT-CCCCTG-TGGGG-ATGCAGTTCTGAGCACCCTTTTGATCAGGGCAGGAC----------------------TAGTAGGCAG------CTGGCAC-----TGA--CCTTCCTGTTGCTCCCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGCCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCAGGGCAGCCTCGGGCCCCCCAGCTTCACCGCCACCGCCACCGTCCCTCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCTCAGT--------------CCCCACCGCCAATTCAACTTGTCCCTGTTCCC-GCTTCCAGCCCAAAGGTGTTAGAACTGCTCGGGTTGAGAGCGAGGC--CAGTCCACTGTGGCTCACCCCAGCCCTGCTTCCAATAGCTTACTGTCTAGCCCATGGGGCACCCCCAGATCCCTGCTCCAGCAGCTCCTCAGTCTAGGCCAACCCCACTCCACTCGTCAGC-----ACATTCTCAGGCCTCCCTGGAGGCCACTGGGGAACTGTCCAACCTCCTCCCAACCCTAGTGAGTCATGAGTGACCTCCACCCTCATCCCCACTTGGGAAATTTTCTAAATTGCCTCCTCTCTCAGCTCTCATCACACATTAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAAGCAATTTTCACCTCCTGTCTCATTTTCCTTCTCCTGACCAGCATT-GGTATGTTCTGTGCCCCCAGCCCCATCTCCACGAGGATTGTCCAGCCCAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAGCCCTGATGTCCTGCCCCATCCCCCTGGCTCCCCAGCCAGTTTGGGGGCCCCCTGATCCCCCTCTCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCCCACCCCCT-CTCTTCCCGCTGCTAGGGTTGGGGTAGAGTCCCCAGGCTC--CAGGCAGCCCCTGCTGGCCTCTGCACCCTCGCCTCCACCTTTCAACCGGCGCACTGCCTCAGCCTGACCACGTT----CTCCCTCGGgctgtctgctcagcctggagcactgccctctcatcctccacttggccagctcctaggcctcctgtgggtcttagcccaaatgtc------ccttccacaaagacaccttcctggcgccacccagcccggtgcctc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45406663 1584 +  49145316 CTTGCAGCTGTCAGAGGTCAACATACCGCTGTCGCTGGGTGTCTGTCCACTGGGCCCTGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCTCATCCCTCTGATTCTGAGCGTATCCGGTGAGGGGCCGCAGGAAAGGGGGTTGGGC-TGGGACT--CGAGTCTTAGTGAGGAGGCAGGG---GACAGA-CCTGTGAGGCTGTGGGTCAAGGGGGCCAGGCCCCTGACCTGGGCTCCCCA----CTGAAGGTCAGCACTGCCCCAGGTCTTTCTGTACCAACCGCCCCCGCCGGGG-ATGCGTTTCTGAGCACTC--TTGATGAGGGCAGGAC----------------------TGGCAAGCAG------CTCACAC-----TGA--CCTTCCTGATGCTCCCACAGGCAGTACCTTCCCCGGAACCCCTGTCCGACACCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCGACTGAGACACTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACTGGGACCGCACCCCCTCCCTATTCCCAGTCCCGGGCCCCCCAGCCCCCTATCTAAATCAGCCTGTGCCTGTTCCC-GCTTCCAGCCCGGAGGTGTTAGAACTGCCTGGGTT------GAGGC--CAGTCGGCCGCAGCATGCCCCAGCCCCGCTTCCAGTGGCTCACTGGCTCACCT--GCAGCCCCTCCCCAGCCCTGATCCAGCAGCCC--CAGTCTAGGCTGACCCCACTCTGCTCATCAGC-----ACATTCTCAGGCCTCCCTGGAGACCACTGGGGAACTGTCCAGC---------------------------------CCACCCTC--CCCCCCTTGGGAAATCTTCTGAATCGCCTCCTCTCCCAGCTCTCATCACACAGCAGTTTTTCTTCCTTCTCAAAGCTTCTCTGAAATTAATTTTCACCTCCTGTCTCATTTTCCTTCTCCTGACCAGCATTGGGTATGTTCTGTGCCCC-----------------AGATTGTCCAGCTGAACTGTGGTCTGTGGCGGGGGCCGGGGTTCAG-CCTGATGT-CTGCCCTGTCCCCCTGGCTCCCCACCAAGTTTGGAGGGCCCCTGATCCCCTTCTCCACCTTTACTCCCCCAGGGCACTAAGGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACTGATGAGTTTGAGCAGGTGAGGGCCCCGCCTCCT-CTCTTCCTACTGCTAGGGTTGGGGTGGAGTCCCCAGGCTC--CAGGCAGTCCTTGCCAGcctctgctcccttgcttccacctttcaggtggtgcagtccctcggcctgaccaagctctgcttcactcaggctgtttgctcagccaggagaactg-cctttcctcctccagttggctggctcctaggcctcctgtaggccttagcccaaatggc------ccttcctc--agagaccttcccagagccacctggcccagtgtctc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3658241 1507 + 145441459 CCTGCAGCTGTCAGAGGTGAACATACCATTGTCACTGGGTGTCTGTCCACTGGGGCCAGTTTCCCTCACCAAGGAGCAGCTATACCAACAGGCCATGGAAGAGGCCGCCTGGCACCACATGCCCCACCCCTCTGACTCCGAGCGCATTCGGTGAGGGGCT-GGAGAAAGGGCTGGGGAC-CGGGACTCCCCAGTCTGAGGGAGGAGCTGGTT---CCTGGGTCCTGAGAGAC--TAGGT--AGAGTACTCG---------------TCTCAAAGTGCTGAGGAC-----TTGACTTGGGGCTCCCTAAAGCAG--------G-TTGAA-GTGTGCTTCTGAACACTCTCCTG---AAGGCAGGGC----------------------TGGAGCTCAGAGCCTCCTGGCAC-----TAAATCCTCACTGGT----CCACAGGCAGTACCTCCCCCGGAACCCTTGCCCGACACCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACTGTGGAGTTCTACCAGCGCCTGTCAACTGAGACGCTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCAGCTCCGCCGCCACCGCTGCCATCCCCCCTCGGGCTGGAGGGGCGAGGTGGGTGTCCCACTGCGGCCACTGGGACCGCA-CCCCTCCCTA-TCCCAGTCTTGGG----------CCCCCTCAAATTAAACCTGACCCAGTCCCA--------------AAACATTCTAATTGCTAAGATTCAGGGAGAGGCTGCAGGCC-CTAGGCCATGTACAGTTTCCACTGCCAAGAGCT------CTCAGCT------------------CCTG----GGAAACCCTTTAGTTTAGGATAG-------TTGCTGAAGTGCAGTAGACACTCCCAAG---ACCTAGAGACCTCTGCAGAACTGTCTGAC---CTCTTAACTGCAGTGGGTCAG--------CCCCTCCCCATCTCCTCCTGAG---TTTTCTACTTCGTCTCCTTT--CAGCTTTCATTATGCATTAGTTTCTCTTCTTTCTCAAAGCTTTTCTGAAAGCAATTCTCACCTCCTGTCTCATTTTCTT----CTGACCA----T-GGTATGTTTTGTGCTCCCAGCACTGTCTCCAAGTGGACTCTCCA---CAGC--TGGTCTGTGGTGGGGGTCTGGGTCCAGCCCTGATGCCCTGCCCTTGTCCCCCTGCTAGCTACTCAATTTGGATACCTTCTGATCTTTC-CTCTGCATTTTCTTTCCCAGGGAACCAAGGCACAGTACTTGGCAGCCAAGGCCCTAAAGAAGCAGTCCTGGCGATTCCACACCAAGTATATGATGTGGTTCCAGAGGCACGAGGAGCCTAAGACCATCACAGATGAGTTTGAGCAGGTGAGGGGCCCGTCCAAC-CTGGGCCCACTG---GGGTATGGCTAGTGTACCCAATCCCAACCCTCAATCCTTGCTGGCCTTT-CTCCTTTG----------------GGCACAGTCCTGTAGACTGACCAAGCT---GGTTCCCTAAGTGGTTCACCTAGCCTGGGATACTGTC----CATCTCCCATTTGTCCATTTCTTAG---TGCTTTAGTTTTGAGT-----TGTCGTTACTGCTTCCAAAGAGAAGCCTTCTTGGAACT-----GCTAACTGCCTC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19618615 1384 - 122678785 CCTGCAGCTGTCAGAAGTGAACATCCCGCTCTCGCTGGGCGTGTGTCCCCTGGGGCCTGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAAGAGGCCGCCTGGCACCATATGCCCCACCCCTCAGACTCCGAGCGGATCCGGTGAGGGACC------AAGACCCCTGAGCGTGGGGAG--GCAGCCCTGATGGGGGGGTATGGTTCCCCAGT-CCTGAGACACTGTGTGA--AG-----------CTTGCTGCTGGTCCTCCA--TGCTG-GGGTGA---------TGGGTACCTGGAAGCTCCCTTGATCCG-TGGGGTGGGCGGCTGTGGTCAC-------ATCAGGTCTAGATTTCTACCCCCACCTCGAGACCGTGGGAATCAT------CAGGCACTAGAATAA--GCCTCCTCTCGT--CCACAGGCAGTACCTCCCCCGGAACCCCTGCCCGACACCCCCCTACCACCACCAGATGCCACCCCCACACTCGGACACCGTGGAGTTCTACCAGCGCCTGTCGACTGAGACGCTCTTCTTCATCTTCTACTATCTGGAGGTACAGCAGGGCCCCCGGGGCAGCCTCGGGCCCCCCGGCTTCGCCGCCACCGCCGCCGTCCCCCCTCGGGCTGGAGGGGTGAGGTGGGTGCCCCACTGCGGCCACAGGGACCGCACCCCCTCCCTGTCCCCAGTCCTGCC---CTCCCCTCACCCCCCAGGCAAACCTGTCCCCATCCCC-ACTTCA--------------------GCTCAGGCT-------AGGT--TTGTCCACTGTGG------------------------------GGGCTTG-----GGAGCCCCCGCCC-------CTCCGGCCTCC------TGTGGGTGTGCCCCGGTATCCGTCACAGT-----GCAGTCACGG---CCTCTGGAGGCCACTAGAGAACTGTCC--CCTCTGCATGACCCCAGGGAGTTA-GAACCAGCCCCACTCTCATCCTGCCCTGGGAAGCTTCCTGAACTGCCT---------GCTCTCAACACGCAGTAGTTTCTTTTCCTTCTCAAAGCTTCTCTGAAAGCTATT----------------------TCTTCCTGACCAGCAGT-GGTATGTTCTGTGTCCCCA--CCCATCTCCACCTGGACTGTCCAGCCCACCCTCGGTCTACGGCGGGGCCCGGG--TCAGCCCTGATGCCCTG-----TGCCCCTTGCCCCC--ACCAGTTTGGGGGCCCCCTGATCCTTGGCTCCTCCCTTCCTCCCCCAGGGCACAAAGGCGCAGTATCTGGCAGCCAAGGCCCTAAAGAAGCAGTCGTGGCGGTTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACAGATGAGTTTGAGCAGGTGAGGGCCCCTCGCTGTGCCCTGCCCAC--------------------CCCCAGGCCC--GTGGTCGTC--------------------------------------------------------------GTCCT-CTTCCTCCGGCCCCATTGCT---------------------GGTCCTCCCCTGGGGCATCACCATGG-----------------------TGTC------CCGTCCTC-----------CGGGGAGGCACCTGGCCTATCGTCTC
i canFam3.chr1              C 0 C 0

a score=345932.000000
s hg38.chr19_GL949751v2_alt    128963 123 +   1002683 ccctttgcagtgctgggcacactcgcttggggtgtgggattttcccagtatgtgtccctgcaccaggctgtgggctctgctgccgagggaccttgat-ggcccccacttcacctccaggtccca
s panTro4.chr19              59063019 123 +  63644993 ccctttgcagtactgggcacactcgcttggggtgtgggattttcccagtatgtgtccctgcaccaggctgtgggctttgctgcccagggaccttgat-ggcccccacttcacctccaggtccca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55939729 118 +  60714840 cccctcgcagtgctgggcacactcgcttggggtgtggga-tttcccagtatgtgtccctgcgccaggctgtgggctctgctgcccagggaccttgat-g---cccacttca-ctccaggtccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102705444 123 - 106955855 ccccttgcagtgctgggcacactcgcttggggtgtaggattttcccagtatgtgtccctgcaccaggctgtgggctctgctgcccagggaccttgat-ggcccccacttcacctccaggtccca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59993021 123 +  64156825 ccccttgcagtgctgggcacactcgctt-gggtgtgggattttcccggtatgtctccctgtaccaggctgtgggctctgctgcccagggaccttgatgggcccccctttcacctccaggtccca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55017619 123 +  59248254 ccccttgcagtgctgggcacactcgctt-gggtgtgggattttcccggtatgtctccctgtaccaggctgtgggctctgctgcccagggaccttgatgggcccccctttcacctccaggtccca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47123871 122 +  51301725 CCCCTTGCAGTGCTGGGTACACTCGCTT-GGGTGTGGGATTTTCCCGGTATGTCTCCCTGTACCAGGCTGtgggctctgctgcccagggacCTTGAT-GGCCCCCCTTTCACCTCCAGGTCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46831079 122 +  50890351 ctccttgcagtgctgggcacactcgctt-gggtgtgggattttcccggtatgtctccctgtaccaggctgtgggctctgctgcccagggaccttgat-ggtccccctttcacctccaggtccca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45408247 117 +  49145316 ccctgtgccgtgctgggt--actcactt-gggtgtgggattttcccagtgagtctccctgca-caggctgtgggttctgctgcccagggaccttgat-ggccctc--tccaccgccaggtccca
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3659748  98 + 145441459 CACCATGCAGTCCTGGGTACTTTAGTTGGAAGCATGGGATTTTCTAGTTGGCATTTCCCAAACTTGAC----------------------CTCCAAT-GGCCCC---TTCTCCTTGATTTCCTG
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19619999   0 - 122678785 C

a score=1015057.000000
s hg38.chr19_GL949751v2_alt    129086 293 +   1002683 gcactcagcagggcaggggctc-------------agtgccgaaacta-ttttttttgaatgGGCTTCTCAAGTTCTAA--------TACTGGGAAATTCCTGCTGCTTGCA-AACactctggaaccaacctac-ctgggtttcagcccag-tccagctgggcgactctaggcaagtcactcgaacctctgtgtctcaattaacttatctgtaaaaatggggggaagaccacctacctaatgcagttgttatgaagattaaatgagttaataacatgtaagtacttaatggtgac----tgctacatagtcagtgTCATGGA-
s panTro4.chr19              59063142 293 +  63644993 gcactcagcagggcaggggctc-------------agtgcggaaacta-ttttttttgaatgGGCTTCTCAAGTTCTAA--------TACTGGGAAATTCCTGCTGCTTGCA-AACactctggaaccaacctac-ctgggtttcagcccag-tccagctgggcgactctaggcaagtcactcgaacctctgtgtctcaattaacttatctgtaaaaatggggggaagaccacctacctaatgcagttgttatgaagattaaatgagttaataacatgtaagtacttaatggtgac----tgctacatagtcagtgTCATGGA-
i panTro4.chr19             C 0 I 2
s ponAbe2.chr19              55939847 293 +  60714840 gcactcagcagggcaggggctc-------------agtggggaaacta-gtttttttgaatgGGCTTCTCAAGTTCTAA--------TACTGGGAAATTCCTGCTGCTTGCA-AACactctggagccaacctac-ctgggtttgagcccag-tctagctgggtgactctaggcaagtcactcgaaactctgtgtctcaatttccttatctgtaaaaatggggggaagaagacctacctaatgcagttgttatgaagattaaatgagttaataacatgtaagtacttaatggtgac----tgctacatagtcagtgTCATGGA-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102705567 292 - 106955855 gcactcagcagggcaggggctc-------------agtggggaaact--ttttttttgaatgGGCTTCTCAAGTTCTAA--------TACTGGGAAATTCCTGCCTCTTGCA-AACactctggagccagccttc-ctgggtttgagcccag-tctagctgggtgactcgaggcaagtcactcgaacctctgtgtctcaatttccttatctgtaaaaatggggggaagaagacctacctaatgcagttgttatgaagattaaatgagttaataacatgtaagtacttaatggtgac----tgctacatagtcagtgTCATGGA-
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              59993144 292 +  64156825 gcacccagcagggcaggggctC-------------AGTGGGGAAGCTA--TTTTTTTTAATGGGCTTCTCAAGTTTTAA--------TACTGGGAAATTCCTGCTTCTTGCA-AACactctggagccagcctac-ctgggtttgagcccag-tctagctgggtgactctgggcaagtcactcgaacctgtgtgtctcaatttccttatctgtaaaaatggggggaagaagacctacctaatgcagttgttatgaagattaaatgagttaataacgtgtaagtacttaatggtgac----tgctacatagtcagtgTCATGGA-
i rheMac3.chr19             C 0 I 3
s macFas5.chr19              55017742 292 +  59248254 gcacccagcagggcaggggctC-------------AGTGGGGAAGCTA--TTTTTTTTAATGGGCTTCTCAAGTTTTAA--------TACTGGGAAATTCCTGCTTCTTGCA-AACactctggagccagcctac-ctgggtttgagcccag-tctagctgggtgactctgggcaagtcactcgaacctgtgtgtctcaatttccttatctgtaaaaatggggggaagaagacctacctaatgcagttgttatgaagattaaatgagttaataacgtgtaagtacttaatggtgac----tgctacatagtcagtgTCATGGA-
i macFas5.chr19             C 0 I 3
s papAnu2.chr19              47123993 293 +  51301725 GCACCCAGCAGGGCAGGGGCTC-------------AGTGgggaagcta-tttttttttaatgggcttCTCAAGTGTTAA--------TACTGGGAAATTCCTGCTTCTTGCA-AACACTCTGGAGCCAGCCTAC-CTGGGTTTGAGCCCAG-TCTAGCtgggtgactctgggcaagtcactCGAACCTCTGtgtttcaatttccttatctgtaaaaatggggGGAAGAAGACCTACCTAATGcagttgttatgaagattaaatgagttaataacgTGTAAGTACTTAATGGTGAC----TGCTACATAGTCAGtgtcatgga-
i papAnu2.chr19             C 0 I 4
s chlSab2.chr6               46831201 293 +  50890351 gcacccagcagggcaggggctC-------------AGTGGGGAAGCTA-TTTTTTTTTAATGGGCTTCTCAAGTTTTAA--------TACTGGGAAATTCCTGCTTCTTGCA-AACactctggagccagcctac-ctgggtttgagcccag-tctagctgggtgactctgggcaagtcactcgaacctctgtgtctcaaattccttatctgtaaaaatggggggaagaagacctacctaatgcggttgttatgaagattaaatgagttaataacgtgtaagtacttaatggtgac----tgctacatagtcagtgtcatgga-
i chlSab2.chr6              C 0 I 132
s calJac3.chr22              45408364 286 +  49145316 acaccca-----gcacaCACTC-------------AGTGGGGAAGCTTTTTTTTTTTTAATGGTCTTTCCAAGTTCTAA--------CAATTGGCAATTTATGCTTCTTGCA-AATactctggagccagcctac-cagggtttgagcccagctctagctgggtgacttcgggcaagtcacttggacc--tgtgtcttaatttccttatctgtaaaaatggggggaagaggccct-cctaatgcagctgttaggaagatttaatgagttagtaacaggtaagtacttgatggtgac----tgctgcatagtaagtgtcagga--
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3659846 273 + 145441459 GCAAACAGCAGAGCAGGGG----------------------GAA-----GTCTGTTTAGTCAGCCTTCTTGAGTCTCAACCATTAGTTGATTGGAAACTCC-ACTCTCCCTA-AATATCCTGAAGCCAGCTGAt-c----------------acccgttgggtgatcttgggcaagtcaatcaagcctcttccttt--gtccccctatctgtaaaaatgggagtaacagaacccacctcatgcagttgttacaaggattaaatgagttaataacatgtaagta-ttgatggtgcctgcttgctatacagtgagcgtcatgaa-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19619999 299 - 122678785 ACACCCAGCAGATCAGGGGCTCCTCGGCAAACACAAACAGGGAAGCTG--TATTCTTTAATGACCTTCCCACATGGTGA--------AAATCAGAACTTCCTACTTGTTgcacaacactctgtggccaggctgtgttgggtttgaattcagctccagctgggtgaccttgggcaagtcgcttggacc----tgcctccatgcccttatgtataaacacgagctgacaa--accccatgtgtgcagttgttacaaggattagatgagttaatgacatgtgagtactctgtggtgcc----cgctctgtagt----aCCATGGGG
i canFam3.chr1              C 0 C 0

a score=309739.000000
s hg38.chr19_GL949751v2_alt    129379 128 +   1002683 TTTTTTTTTTCAAATTACTTTCAGTTGGTGTGTTCT-ACAGTGATG------------TTTTTTTCCACCAAATAC--TTCCCTG-----ATGCCGAGCCCCTTCATGGGGATGAAGTAGTACAAGGTCCTTGTCCTCAGAGAACTCA
s panTro4.chr19              59063437 128 +  63644993 TTTTTTTTTTCAAATTACTTTCAGCTGGTGTGTTCT-ACAGTGATG------------TTTTTTTCCACCAAATAC--TTCCCTG-----ATGCCGAGCCCCTTCATGGGGATGAAGTAGTACAAGGTCCTTGTCCTCAGAGAACTCA
i panTro4.chr19             I 2 C 0
s ponAbe2.chr19              55940140 128 +  60714840 TTTTTTTTTTCAAATTACTTTCAGTTGGTGTGTTCT-ACAGTGATG------------TTTTTTTCCACCAAATAC--TTCCCTG-----ATGCCGAGCCCCTTCATGGGGATGAAGTATTACAAGGTCCTTGTCCTCAGAGAACTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102705860 128 - 106955855 TTTTTTTTTTCAAATTACTTTCAGTTGGTGTGTTCT-ACAGTGATG------------TTTTTTCCCACGAAATAC--TTCCCTG-----ATGCCGAGCCCCTTCATGGGGATGAAGTATTACAAGGTCCTTCAACCAGGAGAACTCA
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              59993439 126 +  64156825 TTTTTTTTTCCAAATTACTTTCA----GTGTGTTCT-ACAGTGACGT----------TTTTTTTCCCACCAAATAC--TTCCCTG-----AAGCCGAGCCCCTTCATGGGGATGAAGTATTACAAGGTCCTTGTCCTCAGAGAACTCA
i rheMac3.chr19             I 3 C 0
s macFas5.chr19              55018037 126 +  59248254 TTTTTTTTTCCAAATTACTTTCA----GTGTGTTCT-ACAGTGACGT----------TTTTTTTCCCACCAAATAC--TTCCCTG-----AAGCCGAGCCCCTTCATGGGGATGAAGTATTACAAGGTCCTTGTCCTCAGAGAACTCA
i macFas5.chr19             I 3 C 0
s papAnu2.chr19              47124290 125 +  51301725 tttttttttccaaattacttTCA----GTGTGTTCT-ACAGTGACG-----------tttttttCCCACCAAATAC--TTCCCTG-----AAGCCGAGCCCCTTCATGGGGATGAAGTATTACAAGGTCCTTGTCCTCAGAGAACTCA
i papAnu2.chr19             I 4 C 0
s calJac3.chr22              45408650 127 +  49145316 atttttTTTTCAAATTACTTACAGTTGGTGTGTTCT-ACAGTGATT-----------TTTTTTCCCCACCAAAGAC--TTCCCTG-----ATGCCGAGCCCCTTCATGGGGATGAA-TATTGCAAGGTCC-TGTCCTCAGAGAACTCA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3660119 120 + 145441459 ----ttttt----attGCTTTCAGTTGGTGTGTTTTAACAGTGGCTTTCCCCATGCACATTTTCCTTACCATACACATTTTCCAGGTACCAAGCTGGGCCTCATCA--------------------ATCCCCATTCTCACAGAAATCT
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19620298 108 - 122678785 GTGTTGGCTTCTGATAACTTCTAATTGTTGTGTTCC-ACAATG---------------GTTTTTTCTACCCAATAT--TTGCCTG-----ATGCCAAGTTC-----------TGAA------CAAGGCCTCTATCCTCAGAGAACTCG
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46831494 132 +  50890351 I

a score=5135684.000000
s hg38.chr19_GL949751v2_alt    129507 1312 +   1002683 GTCCCCTCTCCT--G-GTTCTCCCAGGTTGCCATCTTTG-AAGCACTTAAGACATTCATTT----AGAACCTAGGTCCTCTCCCATTG--TGTCCTCAGATGTTAACCACAGACTTCCTGTCCTTTCCTGGTTTGGCCCAAAACCATCCTCCAAGTTAGTACATTTCAGGGCATCCAGTCATTCAGAAATTCCCACACCACTTCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGActctgagactgttccattctctagaacaagggtgacagtacccactgcctcgaggtctttgtgaagattaaatg---cta-----------------ggctgtgcatCCTGTACT--CACGTGAGAGGTGCTCAAAAGCCACAGCCCTCGAGGAAA--CGAAGGCTGTGCACTCACAC------CTGGGGCTGGGGCCCCGTTCTGGCAGCTGGCTTCGGTGGaac--ctctgcggccccctccgtttcctcctcgctgaagt-ggcatgataa-catttcctacccaagaagaaccttgtgaggatgga---tgagagtgtgtgcgtgcagggcagctggcccggtgcctgacacatccacagccctaagaattgtCCCC-TTTGTCTGTTGGTCCGGCCCAGATCCCAGACCACCTCCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAAGCCACGGGGCATCCCCCTCTCCCAGGAAGCAGGGAGGGGGCCGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAGCGGCCTCTCCTGTA-CCCCCTCAGGAG---TCAGTGAGTAAGGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAATTGGGAGTTGTACCGCCGCCGCCGGTCATCCGTCTCGTCTTCTTCCGGCTGACCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGACCTCTCAGCTGCTTCCCTCCGCAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGTGGGGAGAGGAGTGAGGTCAGAAAG
s panTro4.chr19              59063565 1316 +  63644993 GTCCCCTCTCCT--G-GTTCTCCCAGGTTGCCATCTTTG-AAGCACTTAAGACATTCGTTT----AGAACCTAGGTCCTCTCCCATTG--TGTCCTCAGACGTTAACCACAGACTTCCTGTCCTTTCCTGGTTTGGCCCGAAACCATCCTCCAAGTTAGTACATTTCAGGGCATCCAGTCATTCAGAAATTCCCACACCACTTCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGActctgagactgttccattctctagaacaagggtgacagtacccactgcctcgaggtctttgtgaagattaaatg---cta-----------------ggctgtgcatCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCACAGCCCTCGAGGAAA--CGAAGGCTGTGCACTCACAC------CTGGGGCTGGGGCCCCGTTCTGGCAGCTGGCTTCGGTGGaacctctctgcggccccctccgtttcctcctcgctgaagt-ggcatgataa-catttcctacccaagaagaaccttgtgagggtgga---tgagagtgtgtgcgtgcagggcagctggcccggtgcctgacacatccacagccctaagaattgtCCCC-TTTGTCTGTTGGTCCGGCCCAGATCCCAGACCACCTCCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAAGCCACGGGGCATCCCCCTCTCCCAGGAAGCAGGGAGGGGGCCGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAGCGGCCTCTCCTGTA-CCCCCTCAGGAG---TCAATGAGTAAGGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAATTGGGAGTTGTACCGCCGCCGCCGGTCATCTGTCTCGTCGTCTTCCGGCTGACCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGCCCTCTCAGCTGCTTCCCTCCGCAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55940268 1316 +  60714840 GTCCCCTCTCCT--G-GTTCTCCCAGGTTGCCATCTTTG-AAGCATTTAAGACATTCATTT----AGAACCTAGCTCCTCTCCCATTG--TGTCCTCAGACGTTAACCACAGACTTCCTGTCCTTTCCTGGTTTGACCCGAAACCATCCTCCAACTTAGTACATTTCAGGGCATCCAGTCATTCAGAAATTCCCACACCACTTCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGActgtgagactgttccattctctagaacaagggtgacagtacccgctgcctcgaggtctttgtgaagattaaatg---cta-----------------ggctgtgcatCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCACAGCCCTCGAGGAAA--CGAAGGCTGTGCACTCACAC------CTGGGGCTGGGGCCCCGCTCTGGCAGCTGGCTCCGGTGGaacctctctgcggccccctccgtttcctcctcgctgaagt-ggcgtgataa-catttcctacccaagaagaacctcgtgagggtgga---tgagagtgtgcgcgtgcagggcagctggcccggtgcctgacacatccacagccctaagaattgtCCCC-TTTGTCTGTTGGTCCGGCCCAGATCCCAGACCACCTCCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAAGCCACGGGGCATCCCCCTCTCCCAGGAAGCAGGGAGGGGGCCGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAGCGGCCTCTCCTGTA-CCCCCTCAGGAG---TCAATGAGTAAGGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAATTGGGAGTTGTACCGCCGCCGCCGGTCATCTGTCTCGTCTTCTTCCGGCTGACCCTCCTGTAGTGTCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGCCCTCTCGGCTGCTTCCCTCTGCAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102705988 1311 - 106955855 GTCCCCTCTCCT--G-GTTCTCCCAGGTTGCCATCTTTG-AAGCATTTAAGACATTCATTT----AGAACCTAGCTCCTCTCCCATTG--TGTCCTCAGACGTTAACTACAGACTTCCTGTCCTTTCCTGGTTTGGCCCAAAACCATCCTCCAAGTTAGTACATTTCAGGGCATCCAGTCATTCAGAAGTTCCCACACCACTTCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGAtt-----tttgagactgttccattctctagaacaagggtgacagtacccgctgcctcaaggtctttgtgaagattaaatg---cta-----------------ggctgtgcatCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCACAGCCCTCGAGGAAA--CGAAGGCTGTGCACTCACAC------CTGGGGCTGGGGCCCCGCTCTGGCAGCTGACTTCGGTGGaatctctctgcggccccctccgtttcctccttgctgaagt-ggcatgataa-catttcctacccaagaagaaccttgtgagggtgga---tgagagtgtgtgcgtgcagggcagttggcccagtgcctgacacatccacagccctaagaattgtCCCC-TTTGTCTGTTGGTCCGGCCCAGATCCCAGACCACCACCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAGGCCACGGGGCATCCCCCTCTCCCAGGAAGCAGGGAGGGGGCCGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAGCGGCCTCTCCTGTA-CCCCCTCAGGAG---TCAATGAGCAAGGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAATTGGGAGTTGTACCGCCGCCGCCGGTCATCTGTCTCTTCTTCTTCCGGCTGACCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCCGCCCGAGCCCTCTCACCTGCTTCCCTCCGCAGCCGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59993565 1307 +  64156825 GTTCCCTCTCCT--A-GTTTTCCCAGGTTGCCATCTTTG-ATGCATTTAAAACATTCATTC----AGGACCTAGCTCCTCTCCCACTG--TGTCCTCAGACATTAACTACAGACTTCCTGTCCTTTCCTGGTTTGCCCCAAAACCATCCTCCAAGTTAGTACATTTCAGGCCATCCAGTCATTCAGAAATTCCCACACCACTGCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGActctgagcctgttccattctctagaacaagggtgacagtacccactgcctcgaggtctttgtgaagattaaatg---cta-----------------ggctatgcatCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCGCAGCCCTCGAGAAAA--CGAAGGCTGTGCACTCATGCCTGGTGCTGGTGCTGGGGCCCCGCTCTGGCAGCTGGCTTCGGTGGaac--ctctgcggccccctccgtttcctcctcgctgaagt-ggc---ataa-catttcctacccaagaagaaccctgtgagggtgca----gtgagtgtgcgcatgcagggcagttggcccggcgcctgacacacCTACAGCCCTAAGAACTGTCCCC-TTTGGCTGTCGGTCCGGCCCAGATCCCAGACCACCTCCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGCGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAGGCCA-GGGGCA-CCCCCTCTCCCAGGAAGCAGGGA-GGGGCCGGGAGGCT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAG----CTCTCCTGTACCCCCCTCAGGAG---TCAATGAGCAAAGTGAGGGTCCTGCTGGCAGGGGCGCCGGGCCAGCTGGGGGTTGAACTGGGAGTTGTACCGCCGCCTCCGGTCATCTGTC---TCTTCTTCCGGCTGAGCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGCCCTCTCAGCTGCTTCCCTCCGAAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55018163 1309 +  59248254 GTTCCCTCTCCT--A-GTTTTCCCAGGTTGCCATCTTTG-ATGCATTTAAAACATTCATTC----AGGACCTAGCTCCTCTCCCACTG--TGTTCTCAGACATTAACTACAGACTTCCTGTCCTTTCCTGGTTTGCCCCAAAACCATCCTCCAAGTTAGTACATTTCAGGCCATCCAGTCATTCAGAAATTCCCGCACCACTGCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGActctgagcctgttccattctctagaacaagggtgaccgtacccactgcctcgaggtctttgtgaagattaaatg---cta-----------------ggctatgcatCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCGCAGCCCTCGAGAAAA--CGAAGGCTGTGCACTCATGCCTGGTGCTGGTGCTGGGGCCCCGCTCTGGCAGCTGGCTTCGGTGGaac--ctctgcggccccctccgtttcctcctcgctgaagt-ggcatgataa-catttcctacccaagaagaaccctgtgagggtgca----gtgagtgtgcgcgtgcagggcagctggcccggcgcctgacacaCCTACAGCCCTAAGAACTGTCCCC-TTTGGCTGTCGGTCCGGCCCAGATCCCAGACCACCTCCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGCGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAGGCCA-GGGGCA-CCCCCTCTCCCAGGAAGCAGGGA-GGGGCCGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTG-CCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAG----CTCTCCTGTACCCCCCTCAGGAG---TCAATGAGCAAAGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAACTGGGAGTTGTACCGCCGCCTCCGGTCATCTGTC---TCTTCTTCTGGCTGAGCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGCCCTCTCAGCTGCTTCCCTCCGAAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47124415 1316 +  51301725 GTCCCCTCTCCT--A-GTTCTCCCAGGTTGCCATCTTTG-ATGCATTTAAGACATTCATTC----AGAATCTAGCTCCTCTCCCACTG--TGTCCTCAGACATTAACTACAGACTTcctgtcctttcctggtttggcCCAAAACCATCCTCCAAGTTAGTACATTTCAGGCCATCCAGTCATTCAGAAATTCCCACACCACTGCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGACTCTGAGCCTGTTCCATTCTCTAGAACAAGGGTGACAGTACCCACTGCCTCGAGGtctttgtgaagattaaatg---ctA-----------------GGCTGTGCATCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCGCAGCCCTCGAGAAAA--CGAAGGCTGTGCACTCACGCctggtgctggggctggggccccGCTCTGGCAGCTGGCTTCGGTGGAAC--CTCTGCGGCCCCCTCCGTTTCCTCCTCGCTGAAGT-GGCATGATAA-CATTTCCTACCCAAGAAGAACCTTGTGAGGGTGCA----GTGAGTGTGGGCGTGCAGGGCAGTTGGCCCGGTGCCTGACACACCTACAGCCCTAAGAACTGTCCCC-TTTGTCTGTCGGTCCGGCCCAGATCCCAGACCACCACCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGcccctccctctacc------caccccctt----ccccccgcatgctgatccccctgcccaggtgagggccctgccctgGAAGACTGGAGGGAGGCCCCAGGCCACGGGGCATCCCCCTCTCccaggaagcaggga-ggggcCGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGgctg-cccctcctcccctccccagtgAGGGACATTTTTTGGTAAAcctattttcattttggaaaatatttatgaataaatagtTTTATATGACGGCTGGCAGCAGCGGCCTCTCCTGTACCCCCCTCAGGAG---TCAATGAGCAAAGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAACTGGGAGTTGTACCGCCGCCTCCGGTCATCTGTC---TCTTCTTCCGGCTGAGCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGCCCTCTCAGCTGCTTCCCTCCGAAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46831626 1316 +  50890351 GTCCCCCCCCCT--G-GTCCTCCCGGGTGGCCACCTTGG-AAGCA-TTAAGGAAATCATTC----CGGACCCAGGTTCCTTCCCCATG--GGGCCTCAGGCCATAAATTAAGGCTTTCTGTCCTTTCCTGGTTTGGCCCAAAACCATCCTCCAAGTTAGTACATTTCAGGCCATCCAGCCATTCAGAAATTCCCACACCACTGCCGTCACCAATAAA--A----TGTCCCTGCAGAGTGCTTGGATTTAGActctgagcctgttccattctctagaacaagggtgacagtacccactgcctcaaggtctttgtgaagattaaatg---cta-----------------ggctgtgcatCCTGTACTCACACGTGAGAGGTGCTCAAAAGCCACAGCCCTCGAGAAAA--CGAAGGCTGTGCACTCACGCCTGGTGCTGGGGCGGGGGCCCCGCTCTGGCAGCTGGCTTCGGTGGaac--ctctgcggccccctccgtttcctcctcgctgaagt-ggcataataa-catttcctacccaagaagaaccttgtgagggtgga----gtgagtgtgcgcgtgcagggcagttggcccggtgcctgacacaCCTACAGCCCTAAGAACTGTCCCC-TTTGTCTGTCGGTCCGGCCCAGATCCCAGACCACCTCCTCGTCCACTCACTGACCGCCTTCTCCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGCGACCTCCAGTGACACCGGCCCCTCCCTCTACC------CACCCCCTT-----CCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGAGGGAGGCCCCAGGCCACGGGGCATCCCTCTCTCCCAGGAAGCAGGGAGGGGGCTGGGAGGTT-----TTCCTCTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCACCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTACATGACGGCTGGCAGCAGCGGCCTCTCCTGTACCCCCCTCAGGAG---TCAATGAGCAAAGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAACTGGGAGTTGTACCGCCGCCTCCGGTCATCTGTC---TCTTCTTCCGGCTGACCCTCCTGTAGTGCCCGGCCTTGGACCCGGGCCAGCAGGGCCTCTGCCCGAGCCCTCTCAGCTGCTTCCCTCCGAAGACGTCCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCGGGGAGAGGAGTGAGGTCAGAAAG
i chlSab2.chr6              I 132 C 0
s calJac3.chr22              45408777 1296 +  49145316 GTCCTCTCTCCT--A-GTTCTCCCAGGCTGCCATTCTTGAAAGCATTTCAGACGTTCATTCATTGAGAAGCTAGCTCCTCTCCCATCG--TGCCCTCAGACATTAACTACTAACCTTCTATCC-TTCTTGGTTTGGCCCAGAACCATCCTCCAAGTTAGCACATTTCAGGGCATCCAGTCACTC--AAATTCCCACACCTCTACCACCGCC-ATAAA--A----TGTCCCTGCAGAATGCTTAGATTTAGGc--tgagcctctcccattctttagaacaagggtgacagtactcactgcctcgaggtctttgtgaagattaaatg---cta-----------------ggccgtgcatCCTGTACTTGCACGAGAGAGGTGCTCAAAAGCCACAGCCCTCGAGAATA--CGAAGGCCTTGTACTCACAC------CTGGAGCTGGGCCC-------------------CGGTGGaacctctctgcagttccctccgtttcctccttgatgaagcgggcatgataa-tgtttccaacccaagaagaaccttgtgagggtgga----atgagtgcgcgtgtgcagggcagctggcccagtgcctggcacatccgcagccctaagaactgtCCCCTTTTGTCTGTTGGTCCGGCCCAGATCCCAGACCACCTCTTCGTCCACTCACTGACCGCCTTCTCCCCTGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCTCCTTCTACC------TACCCCCT------CCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGCAGGGAGGCCCCAGGCCACGGGGCATCCCCCTCTCCCAGGAAGCAGGGAGGGGGCTGGGAGG-T-----TTCCTTTCAGCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCAGCGGCCTCTCCTGTACCCCCCTCAGGAG---TCAGTGAGCAAGGTGAGGGTCCTGCTGGCGGGGGCGCCGGGCCAGCTGGGGGTTGAACTGGGAGTTGTACCGCCGCCGGCGGTCATCTGTCTCTTCCTCTTCTGTCTTACCCTCCTTTGGTGCCCGGCCTTGGACCTGGGCCAGCAAGGCCTCCGCTCGAGCCCTCTCAGCCGCCTCCCTCCGAAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGAGGCCTGCAGGGAGAGGACTGAGGTCAGAAAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3660239 1149 + 145441459 GTTCTGTCCTCT--ATATTCTTCCAGACCAC----TTTG-AAGCATTTCAGACAT----------TTGACCTAGCTGCTTTCTTGGTGTATGCGCTCCAACCTTGACATCAGTCTTCCTATCCTGCCCTGCTTTGGTCCTTGACA------------CGAATATCTTAAGGCATTGAGTCCCTCAGAA--TCTCA----------GTTA-CAGTGAAGTG----TGTATCTCCAGAGTGCT-------AGATGGTACATATGTTGCAT--TGTAGGCCACCTGT--TGGTCCCTACT-CCTCAGTGTC---------ACTTAATAACCTTA-----------------GGCCTTACGT-TTGTAC------------------------CTGCAGCCCATG-----------------------------------TGGGGCAAAGGCCAGGCT------------------------------TGGCCCCC------TTCTTCACTCTTAAGA------------------TCACCAAGGGA----------AGGGTGGAGTCTGACAGTGCAAGCTTGTAGGACAATTGGCTTGGTACTT-------CCATGCCCCTGACAACTA--CCT-CTTGTCCATCTGCCTGGCCCAGATCTCAGTCTCCCTCTTCATCCACTCACTGACCACCTTCTTCCCCGGCCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCC--CCCTCTACC------CTCTCCCT------CCCTCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGG-GGGAGGCCCAAGGCCATGGGACA-CCCTCCCCCCCAGGAAGCAGGGAAGGGATAGGGAGGTTTTCTCTTCCTCTCTGCCCTACCCTGGGGGCCTGGGGGCAAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCTGAGGCCTCTCCTA---TCCCCACAAGAGAGTTCAGTGGGCAGGAGTTGGGTTCTGCTGGCGGGGTCGCCGGGCCAGCTGGGGATTGAACTGGGAGTTGTATCGTCGCCTCCGTTCATCTGTCTCTTCTGCTTCCACCTGGCCTTGCTGGGATACCTGGCCTTGTACCCGGGCCAGCAGGGCCTCTGCTCGAGCTCTCTCGGCTGCTTCCCGCTGAAGACGCTCAGCACGGAGCTTTTCTAGGGAAGGTGGCCTGCAGGGAGGAAAGCAAGAACAGAAAG
i mm10.chr7                 C 0 I 12
s canFam3.chr1               19620406 1260 - 122678785 GTCCCCTCCCCTCAG-TTCTTTTCAGGT-----TCTTTG-CAGCATCTCAGATACTGATGC----AGACCC--GGCCCTTTCCCCGTG--TCCTCTCTGACATTAA--GCAGACTCCCCTCTCTATCCTGGCTTGGGCCAAAGTAATCCTCCAAGTC----CACGGCAAGGCCTCCC-TCCTTCAGAAACACCCACGCCACCACTGTCACCAATAAA--ACATCTATCCCAACAGCGTGCCTGGACTTAGACTC--AGCCTATTCCATTCTCTAGGATG-GGGTAACAG---------CCTCGGGGT-TGTGTGAAGGTC-AATG---CTAGCAGCACACAGCTCGAGGGCTGAGCACCAGCTCCT------------GTGCTCAAGCGCCGCAGCCCTCGGGAGAAGTCAGATGCTGTGTAAATGTGC------GGGGGACTGAGGCCCCAT-------GCTGGCCTTGGTG------CGCCTCTGCCTCCCCGGTTCCTT------TAAAGGGGGCAGGAGAATCTTTTCCTGACCAAAAAGAGCCTGGTGAGGGTGGAAGGAGCTGGCACGTGCATGCAGGCCGCTGGGCCTGGTACCTGGCACGTCCCTGGCCCAGAGATCCGTTTCC-TCTGTCTGTCGGTCCGGCCCAGATTCCTGGCCACCTGCTCGTCCACTCACTGACCACCTTCTCCCCTGGGCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGGCCCTCCCTCTAcccccgcgcgcccccccgcccccccccgcATGCTGACCCCCCTGCCCAGGCTAGGGCCCGGCCCTGGAAGACTGG-GGGAGGCCCCAGGCCTTGGGGCAGCCCTCACCCCCAGGAAGCA---------------------------------GCCCCACCCTGGGGGCCCGGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATTTTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCTGCGGCCTCTCCTC---TCCCCCCAGGAG---TCAGTGAGC---GCTGGGGTCTTGCTGGTGGGG-CGCCGGGCCCACTGGGGATTGAACTGGGAGTTGTACCGCCTCCGCCGTTCATCTGTC---TCCTCCTCAGGCTGCTCCTCCTGGGGGGTTGTGCTCCGGACTCGTGCCAGCAGGGCCTCTGCCCGAGCCCGTTCTGTTGCTTCCCGCCGAAGACGTTCAGCTCGAAGCTGGTCCAGGGATGGGGGTCTGGGGGGAGAACACTCAGGTCAGAAAG
i canFam3.chr1              C 0 C 0

a score=243658.000000
s hg38.chr19_GL949751v2_alt    130819 83 +   1002683 CTGGTAGCCCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCCGCTGCATCCAGCACACC
s panTro4.chr19              59064881 83 +  63644993 CTGGTAGCCCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCCGCTGCATCCAGCACACC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55941584 83 +  60714840 CTGGTAGCCCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCCGCTGCGTCCAGCACGCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102707299 81 - 106955855 CTGGTAGCCCCTAGGAGGCCATT-GCCCAGCCTCTCCCACAGAGGGAGCTG--CCACCT-GAAGCCCCCCTGCATCCAGCATGCC
i nomLeu3.chr10             C 0 M 197
s rheMac3.chr19              59994872 83 +  64156825 CTGGTAGCTCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCTGCTGCGTCCAGTACGCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55019472 83 +  59248254 CTGGTAGCTCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCTGCTGCGTCCAGTACGCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47125731 83 +  51301725 CTGGTAGCTCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCTGCTGCATCCAGTACGCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46832942 83 +  50890351 CTGGTAGCTCCTAGGAGGCCATTCCCCCAACCTCTCCCATAGAGGGAGCTG--CCGCCTGGAAGCCCTGCTGCATCCAGTACGCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45410073 60 +  49145316 CTGGTAGCCCCTAGGAGGCCGTTCCCCCAACCTCTCCC--AGAGGGAGCTG--CCACCAGGAAC---------------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19621666 76 - 122678785 CTTATAGCCCCTAGAGG-------TCCCACTTTCCCCCA-AGAAGGAGCTGCCCCACCTGGAACCCCGTCCACCTCTA-CCTGCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3661388 12 + 145441459 I

a score=178724.000000
s hg38.chr19_GL949751v2_alt    130902 92 +   1002683 CCAGCCTCAGCTCCTTAGGCCTGCTGG-AAGCAGCC-ACTTGGTGCTGGGACGCCATGGGCACGTCTCTGGCCTTCCCTTCTGTGGGCTTTGGT
s panTro4.chr19              59064964 91 +  63644993 CCAGCCTCAGCTCCTTAGGCCTGCTGG-AAGAAGCC-ACTTGGTGCTGGGACGCCATGGGCATGTCTCTGGCCTTCCCTTCTGT-GGCTTTGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55941667 92 +  60714840 CCAGCCTCAGCTCCTTAGGCCTGCTGG-AAGAAGCC-ACTTGGTGCTGGGACGCCATGGGCACGTCTCTGGCCTTCCCTTCTGTGGGCTTTGGT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59994955 91 +  64156825 CCAGCCTCAGCT-CTCAGGTCTTCTAC-AAGAAGCC-GCTTGGTGCTGGGACACCATGGGCACGTCTCTGGCTTTCCCTTCTGTGGACTTTGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55019555 91 +  59248254 CCAGCCTCAGCT-CTCAGGTCTTCTAC-AAGAAGCC-GCTTGGTGCTGGGACACCATGGGCACGTCTCTGGCCTTCCCTTCTGTGGACTTTGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47125814 91 +  51301725 CCAGCCTCAGCT-CTCAGGCCTTCTGG-AAGAAGCC-GCTTGGTGCTGGGACACCATGGGCACGTCTCTGGCCTTCCCTTCTGTGGACTTTGGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46833025 91 +  50890351 CCAGCCTCAGCT-CTCAGGCCTTCTGG-AAGAAGCC-GCTTGGTGCTGGGACACCATGGGCACGTCTCTGGCCTTCCCTTCTGTGGACTTTGGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45410133 80 +  49145316 CCAGTCTTGGCTCTTAGGGCCTGCTGG-AAGAAGCC-GCCGGGGGCTGGGACGCCATGGGCG------------TCCCTCCTGTGGGCTTCAGT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19621742 71 - 122678785 CTGGTCTGAG------AGGTTTGTGGGTAGGAAGCTGGCCTCATGCTGTG----CAAGGACCCAGGACT-GCCATCACTGCC------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3661388 12 + 145441459 I
e nomLeu3.chr10             102707380 197 - 106955855 M

a score=146355.000000
s hg38.chr19_GL949751v2_alt    130994 56 +   1002683 CCTCCCCAGTCTTTA----------AAATCTGATGCTTCTCCAGGTCAAGAA--AGCACACTTAGCAG
s panTro4.chr19              59065055 56 +  63644993 CCTCCCCAGTCTTTA----------AAATCTGATGTTTCTCCAGGTCAAGAA--AGCACACTTAGCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55941759 56 +  60714840 CCTCCCCAGTCTTTA----------AAATCTGATGCTTCTCCAGGTCAAGAA--AGCACACTGAGCAG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              59995046 56 +  64156825 CCTCCCCAGTCTTTA----------AGATCTGATGCTCCTCCAGGTCAAGAA--AGCACAAtaagcag
i rheMac3.chr19             C 0 I 10
s macFas5.chr19              55019646 56 +  59248254 CCTCCCCAGTCTTTA----------AGATCTGATGCTCCTCCAGGTCAAGAA--AGCACAAtaagcag
i macFas5.chr19             C 0 I 10
s papAnu2.chr19              47125905 56 +  51301725 CCTCCCCAGTCTTTA----------AAATCTGATGCTCCTCCAGGTCAAGAA--AGCACAATGAGCAG
i papAnu2.chr19             C 0 I 10
s chlSab2.chr6               46833116 56 +  50890351 CCTCCCCAGTCTTTA----------AAATCTGATGCTCCTCCAGATCAAGAA--AGCACAAtgagcag
i chlSab2.chr6              C 0 I 10
s calJac3.chr22              45410213 56 +  49145316 CCTCCCCAGTCTTTA----------AAATCTGATGGTCCTCCAGACCAAGAA--AGCACATGGGGCAG
i calJac3.chr22             C 0 I 9
s mm10.chr7                   3661400 66 + 145441459 CCTACCTGGTCCTTGGACTCACTGCAAGGCCTATGTCCCTTCAGGTCAAGAA--TGCCCACTGAGCAG
i mm10.chr7                 I 12 I 1
s canFam3.chr1               19621813 39 - 122678785 ----------------------------CCTGATGCCCCTCCAAATCATGAGCTATGATGATGAGCA-
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102707380 197 - 106955855 M

a score=96993.000000
s hg38.chr19_GL949751v2_alt    131050 27 +   1002683 CCCCCTGGCCCTCAGTTTCCCTTTCTA
s panTro4.chr19              59065111 27 +  63644993 CCCCCTGGCCCTCAGTTTCCCTTTCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55941815 27 +  60714840 CCCCCTGGCCCTCAGTTTTCCTTTCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102707578 27 - 106955855 CTCTCTGGGCCTCACTTTCCCTTTCTA
i nomLeu3.chr10             M 197 C 0
s rheMac3.chr19              59995112 27 +  64156825 ctctctgggcctcagtttccctttcta
i rheMac3.chr19             I 10 C 0
s macFas5.chr19              55019712 27 +  59248254 ctctctgggcctcagtttccctttcta
i macFas5.chr19             I 10 C 0
s papAnu2.chr19              47125971 27 +  51301725 ctctctgggcctcagtttccctttcta
i papAnu2.chr19             I 10 C 0
s chlSab2.chr6               46833182 27 +  50890351 ctctctgggcctcagtttccctttcta
i chlSab2.chr6              I 10 C 0
s calJac3.chr22              45410278 27 +  49145316 CTCCCTGGGCCTCAGCTTCCCGTTCTG
i calJac3.chr22             I 9 C 0
s mm10.chr7                   3661467 27 + 145441459 ATCCTGGGCCCCCTGTATCATTTTCTA
i mm10.chr7                 I 1 I 1266
s canFam3.chr1               19621852 27 - 122678785 CAGCCAGGACCTCAGTTTCTCCTTCTG
i canFam3.chr1              C 0 C 0

a score=396349.000000
s hg38.chr19_GL949751v2_alt    131077 169 +   1002683 GAGGA-AAGAAGACTACAGGC-AGTGTACCCCCTCTAGACCAGGGGTGCAGCATCCTGGAGACAGAAGCCTGC-TTTTACTCTC-TAACCcagcagctctcaaactctttggtctcaggacccc----tttatactcttaaaaaccaaggaccccaagagcttttgtttaaatgggt
s panTro4.chr19              59065138 169 +  63644993 GAGAA-AAGAAGACTACAGGC-AGTGTACCCCCTCTAGACCAGGGGTGCAGCATCCTGGAGACAGAAGGCTGC-TTTTACTCTC-TAACCcagcagctctcaaactctttggtctcaggacccc----tttatactcttcaaaaccaaggaccccaagagcttttgtttaaatgggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55941842 169 +  60714840 GAAAA-AAGAAGACTACAGGC-AGTATACCCCCTCTAGACCAGGGGTGCAGCATCCTGGAGATATAAGCCTGC-TTTTACTCTC-TAACCcagcacctctcaaactctttggtctcaggacccc----tttatactcttaaaaaccaaggacctcaagagcttttgtttaaatgggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102707605 169 - 106955855 GAGAA-AAGAAGACTACAGGC-AGTGTACCCCCTCTAGACCAGGGATACAGCATCCTGGAGATAGAAGCCTGC-TTTTACTGTC-TAACCcagcggctctcaaactctttggtctcaggacccc----tttatactcttaaaatccaaggaccccaagagcttttgtttcaatgggt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59995139 157 +  64156825 gagaa----aagagTACAGGC-AGTGTACCCCCTCTAGACCAGGGGTA--------TGGAGAC--AAGCCTGC-TTTTACTGTCTTAACCcagcagctctcaaactgtttggtctcaggacccc----tttatactctttaaaactgaggaccctaagagcttttgtttaaatagat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55019739 157 +  59248254 gagaa----aagagtacaggc-agtgtaccccctctAGACCAGGGGTA--------TGGAGAC--AAGCCTGC-TTTTACTGTCTTAACCcagcagctctcaaactgtttggtctcaggacccc----tttatactctttaaaactgaggaccctaagagcttttgtttaaatagat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47125998 160 +  51301725 gAG------AAGAGTACAGGC-AGTGTACCCCCTCTAGACCAGGGGTACAGCATCCTGGAGAC--AAGCCTGCTTTTTACTGTCTTAACCCAGCAGCTCTCAAAC----TGGTCTCAGGATGCC----TTTATACTCTTTAAAACTGAGGACCCTAAGAGCTTTTGTTTAAATAGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46833209 165 +  50890351 gagaa----aagagtacaggc-agtgtaccccctctAGACCAGGGGTACAGCATCCTGGAGAC--AAGCCTGC-TTTTACTGTCTTAACCcagcagctctcaaactgtttggtctcaggacccc----tttatactctttaaaactgaggaccctaagagcttttgtttaaatagat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45410305 153 +  49145316 GAGAAAAAAAAGATTACAGGC-GGC-------------------GGGACAGTATCCTGGGGATAGAAGCCTGC-TCTTACTCTC-TAACCcagtggttctcaaactctttggtcccaggacacacgcgtttatactcttaaaaa--gggggtcccaagagcgtttgtttcaatgggt
i calJac3.chr22             C 0 M 842
s canFam3.chr1               19621879 107 - 122678785 --------------TAGGAGCTAGGAGACCTGCTC--------AGGTTTGTCCTCCTTGGGACACAAACCTGC-TCTGAC-----TGACCCCGTGGTTCTCAAAC-----------------------T-------------------AGACCCCAGAAAGCTTTGTGTCAGTGGGT
i canFam3.chr1              C 0 I 4
e mm10.chr7                   3661494 1266 + 145441459 I

a score=814687.000000
s hg38.chr19_GL949751v2_alt    131246 357 +   1002683 t----ctcttaatatgctgcaaatcattagtgaaaactaagaaagtttGGacacaagcatc--tgccattggccatcagagtgagggtgtctccccatcacacagcctc--tggaaacctgcactacatgcctgagaacacgagtggaaaagtccaccag----tg-tcaggaaaataggcttgacaccacagcaccccgggaaaggg-tgtcaggacccctagggctccctggaccacatgctgagaaccactTCTCCACCTAGCCAGCCCTTCACGGAGTCCCTGGCTGTCCTGACCAGAGACGCTGCAGTGCCCATGCTGGGCTGCTGCCAAGCCCTGAAGGTCTGGGCCCTGGTCTGCCGAGGTGGG
s panTro4.chr19              59065307 361 +  63644993 t----ctcttaatatgctgcaaatcattagtgaaaactaagaaagtttGGacacaagcatc--tgccattagccatcagagcgagggtgtcttctcatcacacagcctc--tggaaacctgcactacatgcctgagaacacgagtggaaaaggccaaaagtgtttg-ttaggaaaataggcttgacaccacggcaccccgggaaaggg-tgtcaggacccctagggctccctggaccacatgctgagaaccactTCTCCACCTAGCCAGCCCTTCACGGCGTCCCTGGCTGTCCTGACCAGAGACCCTGCAGTGCCCATGCTGGGCTGCTGCCAGGCCCTGAAGGTCTGGGCCCTGGTCTGCCGAGGTGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942011 357 +  60714840 t----ctgttaatatgctgcaaatcagaagtgaaaactaagaaagtttGGacacaagcatc--taccattagccatcagagtgagggtgtcttctcatcacacagcctc--tggaaacctgcactacgtgcctgagaacgcgagtggaaaaggccaacag----tg-ttaggaaaataggcttgacaccacggcaccccgggaaaggg-tgtcaggacccctaggcctccctggaccacatgctgagaaccactTCTCCACCCAGCCAGCCCTTCACGGAGTCCCTGGCTGGCCTGACCAGAGACCCTGCAGTGTCCATGCTGGGCTGCTGCCAAGCCCTGAAGGTCTGGGCCCTGGTCTGCCGAGGTGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102707774 348 - 106955855 t----ctgttaatatgttgcaaatcag-agtgaaaactgagaaagtttGGacacaagcgtctgtgccattagccatcagagcgagggtgtcttctcatcacacagcctc--tggacacctgcactgcgtgcctgagaacacgcgtggaaaaggccaacag----tg-ttaggaaaataggcttgacacctcggcaccccgggaaaaggctgtcaggacccctagggctccctggaccacatgctgaga-----------accCAGCCAGCCCTTCAGGGAGTCCCTGGCCGTCCTGACCAGAGACCCTGCAGTGCCCATGCCGGGCTGCTGCCAAGCCCTGAAGGTCTGGGCCCTGGTCTGCTGAGGCGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59995296 359 +  64156825 tctacctgttaatatactgcaaatcagaagtgaaaactaagaaagtttGGacacaagcatctgtgccatcagccgtcagaacgagggtgtcttctcatcacacagcctc--tggaaacctgcactatgtgcctgagaatgcgagtgaaaaaggccaacag----tg-tcaggaaaataggcttgataccacggcaccccgggaaaggg-tggcaggacccctggggcttcctggaccacatgttgagaaccactTC---ACCCAGCCAGCCCTTCACCGAGTCCCTGGTTGTCCTGACCAGAGACCCTGCAGTGCCCATGCTGGGCTGCTGCCAAGCCCTGAAAGTCTGGGCCCTGGTCTGCCGAGG-AGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55019896 359 +  59248254 tctacctgttaatatactgcaaatcagaagtgaaaactaagaaagtttGGacacaagcatctgtgccatcagccatcagaacgagggtgtcttctcatcacacagcctc--tggaaacctgcactatgtgcctgagaatgcgagtgaaaaaggccaacag----tg-tcaggaaaataggcttgataccacggcaccccgggaaaggg-tggcaggacccctggggcttcctggaccacatgttgagaaccactTC---ACCCAGCCAGCCCTTCACCGAGTCCCTGGTTGTCCTGACCAGAGACCCTGCAGTGCCCATGCTGGGCTGCTGCCAAGCCCTGAAAGTCTGGGCCCTGGTCTGCCGAGG-AGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47126158 359 +  51301725 TCTACCTGTTAATATACTGCAAATCAGAAGTGAAAACTAAGAAAGTTTGGACACAAGCATCTGTGCCATCAGCCATCAGAACGAGGGTGTCTTCTCATCACACAGCCTC--TGGAAACCTGCACTATGTGCCTGAGAATGCGAGTGAAAAAGGCCAACAG----TG-TTAGGAAAATAGGCTTGATGCCACAGCACCCCGGGAAAGGG-TGGCAGGACCCCTGGGGCTTCCTGGACCACATGTTGAGAACCACTTC---ACCCAGCCAGCCCTTCACCGAGTCCCTGGTTGTCCTGACCAGAGACCCTGCAGTGCCCATGCTGGGCTGCTGCCAAACCCTGAAAGTCTGGGCCCTGGTCTGCCGAGG-AGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46833374 359 +  50890351 tctacctgttaatatactgcaaatcagaagtgaaaactaagaaagtttGGacacaagcatctgtgccatcagccatcagaacgagggtgtcttctcatcacacagcctc--tggaaacctgcactatgtgcctgagaacgcgagtgaaaaaggccaacag----tg-ttaggaaaataggcttgataccacagcaccccgggaaaggg-tggcaggacccctggggcttcctggaccacatgttgagaaccactTC---ACCCAGCCAGCCCTTCACCGAGTCCCTGGTTGTCCTGACCAGAGACCCTGCAGTGGCCATGCTAGGCTACTGCCAAGCCCTGAAAGTCTGGACCCTGGTCTGCCGAGG-AGG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19621990 257 - 122678785 ----TCTATTGCTATTTTGCA---TAGAAGCG-------AGAAAACCTTGAAACAAGGTTA--CGTCCCCAGTCACCACA------GTGTCTCTTCA-CGCCCTGTCTCTTTAGAAGC---CACTGGACAATCAAGGCT--GAGTG--AAGGGTCACAGG----GGCTCAGGAAAACCAGCTTGCCTCTGCAG-ACCCCCTGCTAGGG-CGTTGGAGCCCCAAAG----------CCACACGTGGCGAGCCGCCTCCCCAGGCCCCCAGCCCCTCAC---------------CCTGA------------CAGCACCAATGCA-----GCTGCCCA------------------------------------
i canFam3.chr1              I 4 C 0
e mm10.chr7                   3661494 1266 + 145441459 I
e calJac3.chr22              45410458 842 +  49145316 M

a score=999202.000000
s hg38.chr19_GL949751v2_alt    131603 286 +   1002683 GT----CTTCTTACTCCTTGGGTCGCTGCTTCTCAGACCCCTC---CTTTTCCTTTCTGCTGCGACTGCCTTCATCACCGCCGTGCTGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGCAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCGGGCGGGGGGC---CCCCTCGCCCTGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCGCTGCACTCTGGCCCAGGTATGTCAGGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
s panTro4.chr19              59065668 286 +  63644993 GT----CTTCTTACTCCTTGGGTCGCTGCTTCTCAGACCCCTC---CTTTTCCTTTCTGCTGCGATTGCCTTCATCACCGCTGTGCTGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGCAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCTGGGCGGGGGGC---CCCCTCGCCCTGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCACTGCACTCTGGCCCAGGTATGTCAGGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942368 290 +  60714840 GTCTTCCTTCTTACTTCTTGGGTCGCTGCTTCTCAGACCCCTC---CTTTTCCTTTCTGCTGCAATTGCCTTCATCACCGCTGTGCCGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGCAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCGGGCGGGGGGC---CCCCTCGCCCTGGAGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCGCTGCACTCTGGCCCAGGTATGTCAGGATGCCCAGAGCCTTCTCTTGTCTCTCCTGAGGGGGCCAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708122 290 - 106955855 GTCTTCCTTCTTACTCCTTGGGTCGCTGCTTCTCAGACCCCTC---CTTTTCCTTTCTGCTGCGATTGCCTTCATCACCGCTGTGCCGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGCAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCGGGCGGGGGGC---CCCCTCGCCCTGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCGCTGCACTCTGGCCCAGGTATGTCAAGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59995655 290 +  64156825 GTCTTCCTTCTTACTCCTTGGGTCGCAGCTTCTCAGACCCCTCCTTCTTTTCCTTTCTGCTGCAACTGCCT---TCACCGCTGTGCCGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGAAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCAGGAGGGGGCC---CCCCTCGCTCTGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCGCTGCACTCTGGCCCAGGTACGTCAGGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020255 290 +  59248254 GTCTTCCTTCTTACTCCTTGGGTCGCAGCTTCTCAGACCCCTCCTTCTTTTCCTTTCTGCTGCAATTGCCT---TCACCGCTGTGCCGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGAAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCAGGAGGGGGCC---CCCCTCGCTCTGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCGCTGCACTCTGGCCCAGGTACGTCAGGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47126517 287 +  51301725 GTCTTCCTTCTTACTCCTTGGGTCGCTGCTTCTCAGacccctc---cttttcctttctgctgcaATTGCCT---TCACCGCTGTGCCGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGAAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCAGGCGGGGGGC---CCCCTCGCTCCGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCCGCTGCACTCTGGCCCAGGTACGTCAGGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46833733 290 +  50890351 GTCTTCCTTCTTACTCCTTGGGTCGCTGCTTCTCAGACCCCTCCTTCTTTTCCTTTCTGCTGCAATTGCCT---TCACCGCTGTGCCGTCTCTTCTTCCCCAGATGCTTCTGCATCTCCCGAAGAGGGTCCAGACGGCTCTTGATCTTCTCATCTGGGGCTGGGCCAGGCGGGGGGC---CCCCTCGCTCCGGGGGTAGCTGGTACCAAGGGGGTTGAGTCTGTGCCTCTGCTGCACTCTGGCCCAGGTACGTCAGGATGCCCAGAGCTTTCTCTTGCCTCTCCTGAGGGGGCCAG
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3662760 277 + 145441459 GT----ATTCTTACTCTCGGGGTCGTTGTTTCTGAGG---------CCGTTCCTCTCTGGAAGGACGGCTT---TCACTGCTGTGC---CTTTTCTTTGCCAGGTGCTTCTGCATCTCTTTCAAGGGATCCAGTCGGTTCTTGATCTTCTCATCTGGGCTTGGGCCTGGAGGGCAGCAGTCCTTTTGCCCTGGGGGGAGCTGGTACCAAGGAGGCTGAGTTTGGGCCTCTGCTGCACTCTGGCCCAAGTAAGTCAGGATACCTAGTGCTTTCTCTTGTCTCTCCTGCAGAGGCAAG
i mm10.chr7                 I 1266 C 0
s canFam3.chr1               19622247 285 - 122678785 -----CTTCCTTACACTTCAGGCCGCTGCTTCTCAGGCTTCTC---CTTCCCCTTCCTGCCATGGCCACCATTGTCCCCACTGTGCCGTCTCTTCCTCCTCAAGTGCTTCTGTATCTCCTGTAGAGGGTCCAGGCGGTTCTTGATCTTTTCATCTGGACCTGGGCTGAGCTGGGGGG---CCCCTTGCCGTGGGGGTAGCTGATACCAAGGCAGCTGAGTCTGGGCTTCTGCTGCACTCTGGCCCAGGTAGGTCAGGATGCCCAGAGCTTTCTCCTGCCTCTCCTGAGGGGGACAG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45410458 842 +  49145316 M

a score=142995.000000
s hg38.chr19_GL949751v2_alt    131889 46 +   1002683 GAAATACAAGAGATGTGATATAATCTTTCAAGGTGTC--AGGTGTGTC
s panTro4.chr19              59065954 46 +  63644993 GAAATACAAGAGATGTGATGTAATCTTTCAAGGTGTC--AGGTGTGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942658 46 +  60714840 GAAATACAAGAGATGTGATATAATCTTTCAAGGTGTC--AGGTGTGTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708412 46 - 106955855 GAAATACAAGAGATGGGATATAATCTTTCAAGCTGTC--AGGTGTGTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59995945 46 +  64156825 GAAATACAAGAGATGGGATATAATCTTTCAAGGTGTC--AGGTGTGTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020545 46 +  59248254 GAAATACAAGAGATGGGATATAATCTTTCAAGGTGTC--AGGTGTGTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47126804 46 +  51301725 GAAATACAAGAGATGGGATATAATCTTCCAAGGTGTT--AGGTGTGTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46834023 46 +  50890351 GAAATACAAGAGCTGGGATATAATCTTTCAAGGTGTC--AGGTGTGTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45411301 46 +  49145316 GAAATAAAAGAGATGGGATATAATCTTTCAGGGTGTC--AGGTTTATC
i calJac3.chr22             M 842 C 0
s mm10.chr7                   3663037 46 + 145441459 --AAAACAAAATAGTCTTTTCAGTCCCTCTGGGAGCCCTAGATGTGGC
i mm10.chr7                 C 0 I 98
s canFam3.chr1               19622532 30 - 122678785 --------AAAGAGGGAA--------CTGAGGATGTC--AGCGATGTC
i canFam3.chr1              C 0 C 0

a score=305095.000000
s hg38.chr19_GL949751v2_alt    131935 124 +   1002683 TCCCTGACACAGG------TATCTAAGCGAACAG-GTATCTAAGGCTTGT----------------TATGAACCAGTTGGACCAGGTGCTGGGGATGGAAGACA--AACAGAGGCAAAGCTCC--CCCT-GGGGGGACAGTAGCAGGTACAG
s panTro4.chr19              59066000 124 +  63644993 TCCCTGACACAGG------TATCTAAGCGAACAG-GTATCTAAGGCTTGT----------------TATGAACCAGTTGGACCAGGTGCTGGGGATGGAAGACA--AACAGAGGCCAAGCTCC--CCCT-GGGGACACAGTAGCAGGTACAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942704 127 +  60714840 TCCCTGACACAGG------TATCTAAGCGaacag-gtatctaaggcttgt----------------tatgaaccagttgtaccaggtgctggggatggaagacaccaacagaggccaagctcc--ctCTGGGGGGGACAGTAGCAGGTACAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708458 126 - 106955855 TCCCTGACACAGG------TATCTAAGCGAACAG-GTATGTAAGGCTTAT----------------TATGAACCAGTTGTACCAGGTGCTGGGGTTGGAAGACACCAACAGAGGCCAAGCTCC--CCCT-CCGGGGACAGTAGCAGGTACAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59995991 121 +  64156825 TCCCTGACATAGG------AATCTAAGCAAACAG-GTACCTAAGGCTTGT----------------CATGAACCAGTTGTACCAGGTGCTGGGGATGGAAGACACCAACAGAGGCCAAGTTCC--CCCT-GGGGGGACAGTGGCAG-----G
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020591 121 +  59248254 TCCCTGACATAGG------AATCTAAGCAAACAG-GTACCTAAGGCTTGT----------------CATGAACCAGTTGTACCAGGTGCTGAGGATGGAAGACACCAACAGAGGCCAAGTTCC--CCCT-GGGGGGACAGTGGCAG-----G
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47126850 126 +  51301725 TCCCTGACATAGG------AATCTAAGCAAACAG-GTACCTAAGGCTTGT----------------CATGAACCAGTTGTACCAGGTGCTGGGGACCGAAGACACCAACAGAGGCCAAGTTCC--CCCT-GGGGGGACAGTGGCAGGTACAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46834069 126 +  50890351 TCCCTGACATAGG------AATCTAAGCAAACAG-GTACCTAAGGTTTGT----------------CATGAACCAGTTGTACCAGGTGCTGGGGATGGAAGACACCAACAGAGGCCAAGTTCC--CCCT-GGGGGGACAGTGGCAGGTACAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45411347 112 +  49145316 TCCCTGAC----------------------ACAG-GTATCTAAGGCCTAT----------------GGTGAAGCAGCTGTGCCAGGTGCTGGGGAGGGAAGAGACCAGCAGAGGCCAAGCTCCTGCCCT-GGGGTGACGATAGCAGGGACAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19622562 131 - 122678785 TCC---ACTCAGGGAGCCCTACCTGTGACAACAGAATCCCCCAGGCTCCTGGACAGGTAGAAGCAGCATGAGTCAACTCAGCCATTTTT------CCAAGGACA--------GGTGGGCCTCC--TGCA-CTGGGCAGAGTGTCAATTCAA-
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3663083  98 + 145441459 I

a score=351898.000000
s hg38.chr19_GL949751v2_alt    132059 114 +   1002683 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGCAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGGAGCGAT
s panTro4.chr19              59066124 114 +  63644993 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGCAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGGAGCGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942831 114 +  60714840 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGGAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGAAGCGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708584 111 - 106955855 TAAC----AGCA-GGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGCAGGCATCTTTGC--AGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGGGAAGCGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996112 114 +  64156825 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGCAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGGAGCCAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020712 114 +  59248254 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGCAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGGAGCCAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47126976 114 +  51301725 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTGAGT----GTTCAGAGGCAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGGAGCCAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46834195 111 +  50890351 TAAC----AGCAGGGGAAGGAGGGGAC-AAGTGGAGCCACTTAAGT----GTTCAGAGGCAGGCATCTTTGCAGAGAGAC-TTGAAGAGAAGCCTGAAGGGAT-CAAGCAAAGC-AGAGGAGC---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45411459  96 +  49145316 TCACAGAAAGCAGAGGAAGGAGGGGATGGGGTGGAGCTGCCTGAAT----GTTCAGAGGCAGGCATCTTTGC-------------------------AGGGAG-CAAGCAAAGCAAGAGGACCCGT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3663181 114 + 145441459 TATC----TGCAGGAGGAGGAAGAAAG-AGAGGCTGCGGCCTGTGCAGTAGTGAAGATGGGAGAAGCTTTGGGAACAG-T-TTAAGGAAAAACCTGCAGAA----AAGCAAAGT-GGAGGAGTGAT
i mm10.chr7                 I 98 I 254
s canFam3.chr1               19622693 119 - 122678785 TAACAAAAAACACAAGGGGGAAGGACA-GGGTGCAGCTGCTTTAGG----GTTCAGAGGCA-GCATCTTTGGGGAGATACTTTAAAGATGAACCTGAAAGCCCGCCAGCAAGGC-AAAGGAGTGAG
i canFam3.chr1              C 0 C 0

a score=105273.000000
s hg38.chr19_GL949751v2_alt    132173 32 +   1002683 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGAT
s panTro4.chr19              59066238 32 +  63644993 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942945 32 +  60714840 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708695 32 - 106955855 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996226 32 +  64156825 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020826 32 +  59248254 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127090 32 +  51301725 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46834306 28 +  50890351 ----GGGGTCA--GCAAGTCCAGA-----------------GACAGCAGGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45411555 32 +  49145316 GGGTGGGGTCA--GCAAGTCCAGA-----------------GACAGCAGGT
i calJac3.chr22             C 0 I 12
s canFam3.chr1               19622812 49 - 122678785 --GCGAGACAAAGGCAAGTTCAGAGTTTGGTGGGAACCCCTGAAAGTGGGT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3663295 254 + 145441459 I

a score=32452.000000
s hg38.chr19_GL949751v2_alt    132205 11 +   1002683 AAATGACAAGA
s panTro4.chr19              59066270 11 +  63644993 AAATGACAAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942977 11 +  60714840 GAGTGACAAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708727 11 - 106955855 GAGTGACAAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996258 11 +  64156825 GAGTGACAAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020858 11 +  59248254 GAGTGACAAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127122 11 +  51301725 GAGTGACAAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46834334 11 +  50890351 GAGTGACAAGA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19622861 11 - 122678785 AAGTGACAGGA
i canFam3.chr1              C 0 I 90
e mm10.chr7                   3663295 254 + 145441459 I
e calJac3.chr22              45411587 12 +  49145316 I

a score=297474.000000
s hg38.chr19_GL949751v2_alt    132216 126 +   1002683 GCTGATGTACCtc---ttttttttgagatggagtctcgctctgttgcccagactcgagtgcagtggcacgatctcggctcactgcaacctctgcttcccaggttcaagcaatcctcctacctcagcccc
s panTro4.chr19              59066281 129 +  63644993 GCTGATGTACCtctttttttttttgagatggagtctcgctctgttgcccagactcgagtgcagtggcacgatctcggctcactgcaacctctgcttcctaggttcaagcaatcctcctgcctcagcccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55942988 127 +  60714840 GCTGACGTACCGC--tttttttctgagatggagtctcgctctgttgcccagactcgagtgcagtggcacgatctcggctcactgcaacctctgcttcccaggttcaagcagacctcctgcctcagcccc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708738 126 - 106955855 GCTGAGGTACCtc---ttttttttgagatggagtctcgctctgttgcccagactcgagtgcagtggcacgatctcagctcactgcaacctctgcttcccaggttcaagcaatcctcctgcctcagcccc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996269 127 +  64156825 GCTCATGTACCTG--tttttttttgagatgcagtctcgctctgttgcccaggctcgagtgtagtggcaccatctcggctcactgcaacctctgcctcccaggttcaagcaatcctcctgcctcagcccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020869 127 +  59248254 GCTCATGTACCTG--tttttttttgagatgcagtctcgctctgttgcccaggctcgagtgtagtggcaccatctcggctcactgcaacctctgcctcccaggttcaagcaatcctcctgcctcagcccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127133 126 +  51301725 GCTCATGTacctg---ttttttttgagatgcagtctcgctctgttgcccaggctctagtgcagtggcaccatctcggctcactgcaacctctgcctcccaggttcaagcaatcctcctgcctcagcccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46834345 126 +  50890351 GCTCATGTACCTG---ttttttttgagatgcagtctctctctgttgcccaggcttgagtgcagtggcaccatctcggctcactgcaacctctgcctcccaggttcaagcaatcctcctgcctcagcccc
i chlSab2.chr6              C 0 I 4359
e mm10.chr7                   3663295 254 + 145441459 I
e canFam3.chr1               19622872  90 - 122678785 I
e calJac3.chr22              45411587  12 +  49145316 I

a score=295792.000000
s hg38.chr19_GL949751v2_alt    132342 188 +   1002683 ccgagtagctgggattacaggcacacaccaccatgcccagctaatttttgtatttttagtagagacggggttttgccatgtttggccaggctggtcttgaacttctgacctcaggtgatccacccacgttggcctcccaaagtgctgggattacaggcgtgagccaccatgcacagccACTGATGTAC
s panTro4.chr19              59066410 188 +  63644993 cctagtagctgggattacaggcacacaccaccatgcccagctaatttttgtatttttagtagagacggggttttgccatgtttggccaggctggtcttgaacttctgacctcaggtgatccacccacgttggcctccccaagtgctgggattacaggcgtgagccaccatgcacggccACTGATGTAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55943115 186 +  60714840 cctagtagctgggtttacaggcacacaccactatgcccagctaatttttgta--tttagtagagacggggttttgccgtgtttggccaggctggtcttgaacttctgacctcaggtgatccacccatcttggcctcccaaagtgctgggattacaggcgtgagccaccatgcatggccACTGATGTAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102708864 188 - 106955855 cctagtagctgggattacaggcacacaccaccatgcacagctaatttttgtatttttagtagagagcgggttttgccatgtttggccaggctggtcttgaacttctgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggcatgagccaccatgcacggccACTGATGTAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996396 147 +  64156825 cctagtagctgggattacaggcacgcaccaccatgcccggctaatttttatatttttagtacagacggggttttgccatgtttggccaggctggtcttg---------------------------------------aaTGTGCTGGAATTACAGGTGTGAGCCACCATGCATGACCA--GACATAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55020996 186 +  59248254 cctagtagctgggattacaggcacgcaccaccatgcccggctaatttttgtatttttagtacagacggggttttgccatgtttggccaggctggtcttgaactcctgacctcaggtgatccatccaccttggcctcccaatgtgctgggattacaggtgtgagccaccatgtacgaccA--GACATAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127259 185 +  51301725 cc-agtagctgggattacaggcacgcaccaccatgcccggttaatttttgtatttttagtagagacggggttttgccatgtttggccaggctggtcttgaactcctgacctcaggtgatccatccaccttggcctcccaatgtgctgggattacaggtgtgagccaccgtgcacgacCA--GACATAc
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3663295 254 + 145441459 I
e canFam3.chr1               19622872  90 - 122678785 I
e calJac3.chr22              45411587  12 +  49145316 I
e chlSab2.chr6               46834471 4359 +  50890351 I

a score=561883.000000
s hg38.chr19_GL949751v2_alt    132530 265 +   1002683 CTTTTACACTTGATCTTAGCCAAAAAGCAAGAG------GCGATTGATTCACt------------t----tttgtttgattgttttgagatggggtctcgctc-tgtcacccaggctggagtgcagtggcgcaatctcggcttactgcagcttccacctcctggg-tcaagcgattctcctgcttcagcttcc-------ctgggattacaggcgcgcaccaccatgcccggctaattttttttgtatttt---tagagataccatgttgacc-aggctggtcttgaactcctgacctca
s panTro4.chr19              59066598 271 +  63644993 CTTTTACACTTGATCTTAGCCAAAAAGCAAGAG------GCAATTGATTCACt------------t----tttgtttgattgttttgagatggggtctcgctc-tgtcacccaggctggagtgcagtggcacaatctcggcttactgcagcttccacctcctggg-tcaagtgattctcctgcttcagcctcccgagtagctgggattacaggcgcgcaccaccacgcccggctaa-tttttttgtatttt---tagagataccatgttgacc-aggctggtcttgaactcctgacctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55943301 272 +  60714840 CTTTTACACTTGATCTTAGCCAAAAAGCAAGAG------GCGATTGATTCACt------------t----tttgtttgattgttttgagatggggtctcgctc-tgtcacccaggctggagtacagtggcgcagtctcggcttactgcaacttccacctcctggg-tcaagcgattctcctgcttcagcctcctgagtagctgggattacaggcgcacaccaccacgcccggctaa-tttttttgtatttt---tagagataccatgttgaccaaggctggtcttgaactcctgacctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102709052 275 - 106955855 CTTTTACACTTGATCTTAGCCAAAAAGCAGGAG------GCGATTGATTCACt------------ttttgtttgtttgtttgttttgagatggggtctcgctc-tgtcatccaggctggagtgcagtggcgcaatctcggctcactgcaacttccacctcccagg-tcaagtgattctcctgcttcagcctcccaagtagctgggattacaggcacgcaccaccatgcccagctaa-tttttttgtatttt---tagagataccatgttgacc-aggctggtcttgaactcctgacctca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996543 279 +  64156825 TTTTTACACTTGATCTTAGCCAAAAGGCAAGAG------GCGAATGATTCGCC--ttttttttttt----ttctctttttttttttgagatggggtctcgctc-tgtcacctgggctggagtgcagtggcgcaatctcagctcactgcaacttccacctcccagg-tcaagcgattctcctgcttcagcctcc-aagtagct-ggattacaggcgtgcaccaccacacttggctta-tttttttgtatttt---tagagataccatgttgacc-aggctggtcttgaactcctgacctca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55021182 282 +  59248254 TTTTTACACTTGATCTTAGCCAAAAGGCAAGAG------GCGAATGATTCGCCttttttttttttt----ttttctttttttttttgagatggggtctcgctc-tgtcacccgggctggagtgcagtggcgcaatctcagctcactgcaacttccacctcccagg-tcaagcgattctcctgcttcagcctcc-aagtagct-ggattacaggcgtgcaccaccacacttggcttattttttttgtatttt---tagagataccatgttgacc-aggctggtcttgaactcctgacctca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127444 278 +  51301725 tttttacacttgatcttagccaaaaggcaaGAGCAAAAAGCGAatgatttgcc---------tttt----ttttttttttttttttgagatggggtctcgctc-tgtcacccgggctggagtgcagtggcgcaatctcagctcactgcaacttccacctcccggg-tcaagcgattctcctgcttcagcctcc-aagtagct-ggattacaggcgtgcaccaccacacttggctta-tttttttgtatttt---tagagataccatgttgacc-aggctggtcttgaactcctgacctca
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45411599 268 +  49145316 CTTTTACACTCGATCTTAGCCAAAAGGCAAGAA------GTGAT--GTTCACt----------ttt----tttttttttttttcctgagattgagtctcactcttgccacccaggctagagtgctgtggcacgatctcagctcactgcagcttccacctcctgggttcaagcgattctcctgcctcagcctct---------gggactaaaggtgcatgccaccatgctcagctaactttttttgtatttttagtagagataccatgttgacc-aggctggtcttgaactcctgaccgcg
i calJac3.chr22             I 12 C 0
e mm10.chr7                   3663295 254 + 145441459 I
e canFam3.chr1               19622872  90 - 122678785 I
e chlSab2.chr6               46834471 4359 +  50890351 I

a score=222547.000000
s hg38.chr19_GL949751v2_alt    132795 74 +   1002683 ggtgatccacccgcctcagcctcccaaggtggtgggattacaggcgtgagccacagcC-GGCTGATTTAAATTTT
s panTro4.chr19              59066869 74 +  63644993 ggtgatccacccgcctcagcctcccaaggtggtgggattccaggcgtgagccacagcC-GGCTGATTTAAATTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55943573 74 +  60714840 ggtgatccaccggcctcagcctcccaaggtgctgggattacaggcgtgagccacagcC-GGCTGATTTAAATTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102709327 74 - 106955855 ggtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccacagcC-GGCTGATTTAAATTTT
i nomLeu3.chr10             C 0 I 270
s rheMac3.chr19              59996822 74 +  64156825 ggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccacagcT-GGCTGATTTACATTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55021464 74 +  59248254 ggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccacagcT-GGCTGATTTACATTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127722 74 +  51301725 ggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccatagct-ggctgatttacatttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46838830 74 +  50890351 ggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccacagcT-GGCTGATTTACATTTT
i chlSab2.chr6              I 4359 C 0
s calJac3.chr22              45411867 75 +  49145316 ggtgatctgcccacctcagtttcccaaaatgctgggattacaggcatgagccaccacCAAGCTGATTTAGATTTT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3663295 254 + 145441459 I
e canFam3.chr1               19622872 90 - 122678785 I

a score=218485.000000
s hg38.chr19_GL949751v2_alt    132869 73 +   1002683 TAAAAGCCCATC-AGGTTTGAGACTCCTCCAGTTTGGAGAACTGAGCGGTTTGCCCAGCAGCTGGGGACCTCTA
s panTro4.chr19              59066943 73 +  63644993 TAAAAGCCCATC-AGGTTTGAGACTCCTCCAGTTTGGAGAACTGAGCGGTTTGCCCAGCAGCTGGGGACCTCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55943647 73 +  60714840 TAAAAGCCCATC-AGGTTTGAGACTCCTCCAGTTTGGAGAACTGAGCGGTTTGCCCAGCAGCTGGGGACCTCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102709671 73 - 106955855 taaaaGCCCATC-AGGTTTGAGACTCCTCCAGTTTGGAGAACTGAGCTGTTTGCCCAGCAGCTGGGGACCTCTA
i nomLeu3.chr10             I 270 C 0
s rheMac3.chr19              59996896 74 +  64156825 TAAAAGCCTATCAAGGTTTCAGACCCCTCCAGTTTTGAGAACTGAGCAGTTTGCCTAGCAGCTGGGGACCTCTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55021538 74 +  59248254 TAAAAGCCTATCAAGGTTTCAGACCCCTCCAGTTTTGAGAACTGAGCAGTTTGCCTAGCAGCTGGGGACCTCTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127796 73 +  51301725 taaaagcccatC-AGGTTTCAGACCCCTCCAGTTTCGAGAACTGAGCAGTTTGCCTAGCAGCTGGGGACCTCTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46838904 73 +  50890351 TAAAAGCCCATC-AGGTTTCAGACCCCTCCAGTTTTGAGAACTGAGCAGTTTGCCTAGCAGCTGGGGACCTCTA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45411942 73 +  49145316 TAAAAGCTCATC-AGGTTTGAGACCCCTCCAGTTTGGAGACCTGAGCAGTTCACCTAGCAGCTGGGGATCTCGA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3663295 254 + 145441459 I
e canFam3.chr1               19622872 90 - 122678785 I

a score=99369.000000
s hg38.chr19_GL949751v2_alt    132942 31 +   1002683 GCATCTACCTCCAAC-CCCTGTGGGCGCCCAG
s panTro4.chr19              59067016 31 +  63644993 GCATCTACCTCCAAC-CCCTGTGGGCGCCCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55943720 31 +  60714840 GCATCTACCTCCAAG-CCCTGTGGGCGCCCAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102709744 31 - 106955855 GCATCTACCTCCAAG-CCCTGTGGGCGCCCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59996970 31 +  64156825 GCATCTACCTCCAAG-CCCTGTGGGTGCCCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55021612 31 +  59248254 GCATCTACCTTCAAG-CCCTGTGGGTGCCCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127869 31 +  51301725 GCATCTACCTCCAAG-CCCCGTGGGTGCCCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46838977 31 +  50890351 GCATCTACCTCCAAG-CCCTGTGGGTGCCCAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45412015 31 +  49145316 GCATCTACCTCCAAG-CCCTGAGGGCACCCAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19622962 29 - 122678785 GCACCCACTTCCAAGCCCCTGCAGGGAGG---
i canFam3.chr1              I 90 C 0
e mm10.chr7                   3663295 254 + 145441459 I

a score=8422861.000000
s hg38.chr19_GL949751v2_alt    132973 2501 +   1002683 ACGGCAATAGCCAACGCTTTTTGAGTGTCATGCCTTGGTATGGTCCTAAA---TTCTGTGTGTTCACTCTTGTTTGACCTTGGTCACAACCAATGGCTAAAGTGCCCCCTCCCTCCA------ACTCGATTCATGGCCCCT--CTGATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCCTCTGATCACTCCTTTCCCTTCCTCCAGCAGCTCCCGAAACAGGTCCACAGGGCCAGAACCTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTCCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATAGGCAGGACATTCAGAACCTAGAGGT------A-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGCAGTC------------------------------CAGGGT--GCTGGGGTTATG-AGAAAGGGAGCACTAGGCGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGGTGAGGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTCC--CTTTCAAATAGTAAACCACGGGTCATCAAGGATGTATGGGAGGAGGTCCCTGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTA----------TGCATTA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTGACTACCCCAAGT-----------------------------------------------CTGCTGAAGCCCT-----------------------GTCCCCTGCC----------------------------TTCAGGACGCGGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCTAGACTACCTCC---------------------------CACCCACGGCGG---AGGATCAGACTAGCTAAGGAAATGAAAGTTGGGTGTACACCAAACAGATTTAAAGAGCCATACGGAAAGCCCGTGTTTGTGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGTGCA-CGAAAGGGCTCGCC------CGATGGCGTGGAGCCTGGC-TGTCCGCCTCTCCTTAAAATGTGCcttcccctcactgaagccatctcacttcgtgcaacagagatgacagtgcccctctaagaacgaacagtgcttattggggattccgcaagtcaggtgcacggcatgtagttagcatac----agtagatgctcaataaatagGCTGTGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGGGttcacggattcattaaatg---ttaagcttctcttttgtgctagacactgttccagccatgtgaaatacatcagtgggggaaaAACTAAGACGAGGGCGAGATCAAGGAAGGTTTCGTGGAAGTGGGCACAAGGTTTGCGGGGCAACGTCCTCGAAAGTGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACATTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAACCGCGGCGCCTGCGCGCTGGGCCC-CGGAGCGCCGCCCTGCCGGCTTCCGAGCTTACCTCTTGCTGAGCCAGCAGCACCCTCCGCTCACGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGATG-CCCCCCTTTTTCTTGTCCCTACTTCGACCGCGGATTGGTTCCGAATTAGTTGGTACGGCCC--CCTGGCCTGTAGCGACAGGTGATTGGCTGAGACGCCCTTTATCACAGCGAATGCTAGGCGTTCGGCTCGTGGTATCCCCTAGCAACCGCCTCTTGTCACAGATCTGAACCAATCATAAGTTGGCCCGCCCCT-GATGCTACCAGATGCGGCCGTCGATTG-------------GCCGACATGACCGACAAGTCTCCTTGCGGAAGAGCGCTCTGCACCGACAAACATGCCCGTACATTTGATTGGCTCCTGCCCCGCTGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGGAAGATCACC-CGAGAGTCAGGGACGT-GGCG-----GCGAGGGGCCCTGGAaatctccagataccaaagctggaagggcgtggagtcttctccagttctcctag-tttacagatgttgtgacctaggcttaCAATGGGCCTGGGGTCTG---AAAGCGGGACGT-----------GGGCTGCGGGGGTCAAAGAGCCGGTTTGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------GGGCAAAGAGAGGTGGAGGTGAGACAATCCTCTTCCC-CAACCCCTTTCCATGTTCCCCA--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTGTCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccagAGCCACAGTGTACGCCATCAGGATGCTGAAGGAGACAGGAACGGAAGCCACTCCTGACACGCTCTTCCATTATATCCAAACGTCTGGctccttcgaagccagg
s panTro4.chr19              59067047 2493 +  63644993 ACGGCAATAGCCAACGCTTTTTGAGTGTCATGCCTTGGTATGGTCCTAAA---TTCTGTGTGTTCACTCTTGTTTGACCTTGGTCACAACCAATGGCTAAAGTGCCCCCTCCCTCCA------ACTCGATTCATGGCCCCT--CTGATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCCTCTGATCACTCCTTTCCCTTCCTCCAGCAGCTCCCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTCCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATAGGCAGGACATTCAGAACCTAGAGGT------A-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGCAGTC------------------------------CAGGGT--GCTGGGGTTATA-TGAAAGGGAGCACTAGGCGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGGTGAGGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTCC--CTTTCAAATAGTAAACCACGGGTCATCAAGGATGTATGGGAGGAGGTCCCTGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTA----------TGCATCA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTCACTACCCCAAGT-----------------------------------------------CTGCTGAAGCCCT-----------------------GTCCCCTGCC----------------------------TTCAGGACGCGGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCTAGACTACCTCC---------------------------CACCCACGGTGG---AGGATCAGACTAGCTAAGGAAATGAAAGTTGGGTGTACACCAAACAGATTTAAAGAGCCATACAGAAAGCCCGTGTTTGTGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGCGCA-CGAAAGGGCTCGCC------CGATGGCGTGGAGCCTGGC-TGTCCGCCTCTCCTTAAAATGTGTcttcccctcactgaagccatctcacttcgtgcaacagagatgacagtgcccctctaagaacgaacagtgcttattggggattccgcaagtcaggtgcacggcatgtagttagcatac----agtagatgctcaataaatagGATGTGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGGGttcacggattcattaaatg---ttaagcttctcttttgtgctagacactgttccagccatgtgaaatacatcagtgggggaaaAACTAAGACGAGGGCGAGATCAAGGGAGGTTTCGTGGAAGTGGGCACAAGGTTTGCGGGGCAACGTCCTCGAAAACGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACATTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAAccgcggcgcctgcgcgctgggccc-cggagcgccgcccggccggcTTCCGAGCTTACCTCTTGCTGAGCCAGCAGCACCCTCCGCTCACGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGCTG-CCCCCCTTCTTCTTGTCCCTACTTCGACCGCGGATTGGTTCCGAATTAGTTGGTACGGCCC--CCTGGCCTGTAGCGACAGGTGATTGGCTGAGACGCCCTTTATCACAGCGAATGCTAGGCGTTCGGCTCGTGGTATCCCCTAGCAACCGCCTCTTG--------CTGAACCAATCATAAGTTGGCCCGCCCCT-GATGCTACCAGATGCGGCCGTCGATTG-------------GCCGACATGACCGACAAGTCTCCTTGCGGAAGAGCGCTCTGCATCGACAAACATGCCCATACATTTGATTGGCTCCTGCCCTGCTGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATATATGGAAGATCACC-CGAGAGTCAGGGACGT-GGCG-----GCGAGGGGCCCTGGAaatctccagatagcaaagctggaagggcttggagtcttctccagttctcctag-tttacagatgttgtgacctaggcttaCAATGGGCCTGGGGTCTG---AAAGTGGGACGT-----------GGGCTGCGGGGGTCAAAGAGCCGGTTTGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------GGGCAAAGAGAGGTGGAGGTGAGACAATCCTCTTCCC-CAACCCCTTTCCATGTTCCCCA--GGGACCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCTCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccagAGCCACAGTGTACGCCATCAGGATGCTGAAGGAGACAGGAACGGAAGCCACTCCTGACACGCTCTTCCATTATATCCAAACGTCTGGctccttcgaagccagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55943751 2491 +  60714840 ATGGCAATAGCCAACGCTTTTTGAGTGTCATGCTTTGGTATGGCCCTAAA---TTCTGTGTGTTCACTCTTGTTTGACCTTGGTCGCAACCAATGGCTAAAGTGCCCCCTCCCCCCA------ACTCGATTCATGGCCCCT--CTGATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCTTCTGATCACTCCTTTCCCTTCCTCCAGCAGCTCCCGAAACAGGTCGACAGGGCCAGAACCTGGGGCTCCTGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTCCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATCGGCAGGACATTCAGAACCTAGAGGT------A-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGTAGTC------------------------------CAGGat--gctggggttata-agaaagggagcactaggcgcctaaaagaggcacctgtcct---agctgggggtgagggtagg---------------cagatgaggcaacgc------ctgggttTCGTAAGCTCC--CTTTCAAATAGTAAACCACGGGACATCAAGGATGTATGGGAGGAGGTCCCAGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTA----------TGCATTA-GGCCAGACGATCTGAATTCTAGCCATGCCTCCAAGTCACTACCCCAAGT-----------------------------------------------CTGCTGAAGCCCT-----------------------GTCCCCCGCC----------------------------TTCAGGACGCGGCTTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCCAGACTACCTCC---------------------------CACCCACAGTGG---AGGATCAGACTAGCTAAGGAAGTGAAAGTTGGGTGTACACCAAAC--ATTTAAGGAGCCATACAGAAAGCCCGTGTTTGTGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGTGCA-GGAAAGGGCTCGCCCGATGGCGATGGCGTGGAGCCTGGC-TGTCCCCCTCTCCTT-AAATGTGCcttcccctcactgaagccatctcacttcgtgcaacggagatgacagtgtccctctaa----gaacagtgcttattggggattccgcaagtcaggtgctctgcatgtagttagcatac----agtaggtgctcaataaatagGCTGTGCAGGCAAACTAAAAAATGATCCGAATTTCCGTGAACTGTCCAAGGGttcacggattcattaaatg---ttaagcttctcttttgtgctagacactgttctagccacgtgaaatacatcagtgggggaacaactaagacgaGGGCGAAATCAAGGGAGGTTTCGTGGAAGTGGGCACAAGGTTTGCAGAGCAACGTCCTCGAAAACGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACACTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAACCGCGGCGCCTGCGCGCTGGGCCC-CGGAGCTCCGCCCGGCCGGCCTCCGAGCTTACCTCTTGCTGAGCCAGCAGCACCCTCCGCTCACGCGCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACACGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGATGCCCCCCCTTCGTCTTGTTCCTACTTCGACCGCAGATTGGTTCCGAATTAGTTGGTACGGCCC--CCTGGCCTGTAACGACAGGTGATTGGCTGAGACGCCCTTTATCACAGCGAGTGCTAGGCGTTTGGCTCGTGGTATCCCCTAGCAACCGCCTCTTGTCACAGATCTGAACCAATCATAAGTTGGCCCGCCCCT-GATGCTACCAGATGCGGCCGTCGATTG-------------GCCGACATGACCGTCAAGCCTCCTTGCGGAAGAGCGCTCTGCACCGACAAACATGCCCGTACATTTGATTGGCTCCTGCCCTGCTGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGGAAGATCACC-CGAGAGTCAAGGACGT-GGCG-----GCGAGGGGCCCTGGAAATCTCCAGATACCAAAGCTGGAAGGGCGTGGAGTCTTCTCTAGTTCTCCTAG-TTTACAGATGTTGTG----------ACAATGGGCCTGGGGTCTG---AAAGTGGGACGT-----------GGGCTGCGGGGGTCAAAGAGCCGGTTTGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------GGGCAAAGAGAGGTGGAGGTGAGACAATCCTCTTCCC-CAACCCCTTTCCATGTTCCCCA--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCTCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccagAGCCACAGTGTACGCCATTAGGATGCTGGAGGAGACAGGAACGGAAGCCACTCCTGACACGCTCTTCCATTATATCCAAATATCTGGctccttcgaagccagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102709775 2499 - 106955855 ATGGCAATAGCCAACGCTTTTTGAGTGTCATGCTTTGATAAGGTCCTAAA---TTCTGTGTGTTCACTCTTGTTTGACCTTGGTCACAACCGATGGCTAAAGTGCGCCCTCCCCCCA------ACTCGATTCATGGCCCCT--CTGATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCTTGTCGCTTTTCTTCCTCGTACTCTTTATTGCTTCTGATCACTCCTTTCCCTTCCTCCAGGAGCTCCCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGCTCTGATGTCTGGCTTTCTTCCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATAGGCAGGACATTCAGAACCTAGAGGT------A-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGTAGTC------------------------------CAGGGT--GCTGGGGTTATA-AGAAAGGAAGCACTAGGCGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGATGATGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTCC--CTTTCAAATAGTAAGCCACGGGTCATCAAGGATGTATGGGAGGAGGTCCCTGGCCTAAACCAAAGAGGTTCCTAACCTCAAATGAGGCAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTA----------TGCATTA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTCACTACCCCAAGT-----------------------------------------------CTGCTGAAGCCCT-----------------------GTCCCCCGCC----------------------------TTCAGGACGCGGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCCAGACTACCTCC---------------------------CACCCACGGTGG---AGGATCAGACTAGCGAAGGAACTGAAAGTTGGGTGTACACCAAACAGATTTAAGGAGCCATACAGAAAGCCCGTGTTTATGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGTGCA-GGAAAGGGCTCGCC------CGATGGCGTGGAGCTTGGC-TGTCCCCCTCTCCTT-AAATGTGCCTTCCCCTCActtaagctatctcacttcgtgcaacggagatgacagtgcccctctaagaacgaacagtgcttattggggattccgcaagtccagtgctctgcatttagttagcatac----agtaggtgctcaataaatagGCTGTGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGGGTTCACGGATTCATTAAATG---TTAAGCTTCTCTTTTGTGCTAGACACTCTTCCAGCCATGTGAAATACATCAGTGGGGGAAAAACTAAGACGAGGGCGAGATCAAGGGAGGTTTCGTGGAAGTGGGCACAAGGTTTGCAGAGCAACGTTCTCGAAAACGGG-------------ATCGGCGCCTGGTCCGGAATTTCACACGGGACACACTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAACCGCGGCGCCTGCGTGCTGGGCCC-CGGAGCTCCGCCCGGCTGGCCTCCGAGCTTACCTCTTGCTGAGCCAGCAGTACCCTCCGCTCACGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGGCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGATG-CCCCCCTTCTTCTTGTTCCTACTTCGACCGCAGATTGGTTCCGAATTAATTGGTACGGCCC--CCTGGCCTGTAACGACAGGTGATTGGCTGAGACACCCTTCATCACAGCGAATGCTAGGCGTTCGGCTCGTGGTATCCCCTAGCAACCGCCTCTTGTCACAGATCCGAACCAATCATAAGTTGGCCCGCCCCT-GATGGTACCAGATGCGGCCGTCGATTG-------------GCCGACATGACCGTCAAGTCTCCTTGCGGAAGAGCGCTCCGCACTGACAAACATGCCCATACATTTGATTGGCTCCTGCCCTGCTGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGAAAGATCACC-CGAGAGTTAGGGACGC-CGCGTCCCTGCGAGGGGCCCTGGAaatctccagataccaaagctggaagggcgtggagtcttctccagttctcctag-tttacagatgttgtgacctaggcttaCGGTGGGCCTGGGGTCTG---ATAGTGGGACGT-----------GGGCTGCGGGGGTCACAGAGCCGGTTTGGTGGAGGTCAGCGCCACAGTGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------GGGCAAAGAGAGGTGGAGGTGAGACAGCCCTCTTCCC-CAAC------CCATGTTCCCCA--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCTCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccagAGCCACAGTGTACGCCATCAGGATGCTGGAGGAGACAAGAACGGAAGCCACTCCTGACACGCTCTTCCATTATATCCACACGTCTGGctccttcgaagccagc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59997001 2477 +  64156825 ATGG-------CAACACTTCTTAAGTGTCATGCTTTGGTATGGTTCTAAA---TTCTGTGTGTTCGTTCTCGTTTGACCTTGATCACAAGCAGTGGCTAAAGTGCCCTCTCCCCCCA------ACTCGATTCATGGCTCCT--CTAATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCCTCTGATCACTCCTTTCCCTTCCTCCAGCAGCTCCCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTTCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATAGGCAGGGCATTCAGAACCTAGAGGT------G-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGCAGTC------------------------------CAGGGT--GCTGGGGTTATA-AGAAAGGGAGCACTAGACGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGGTGAGGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTGC--CTTTCAAATCGTAAACCACGGGTCATCAAGGATGGCTGGAAGGAGGTCCCTGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTAGACCAA--ACTGCATTA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTCACTACCCCAAGT--------------------------------------------CGACTGCTGAAGCCCT-----------------------GTCCCCCGCC----------------------------TTCAGGACGCAGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTAAGATTCTAAAAACCCAGACTACCTCC---------------------------CACCCACTGTGG---AGGATCAGACTAGCTAAGGAACTGAAAGTTGGGTGTACACCAAACAGATTTAAGGAGCCATACAGAAAGCCCGTGTTTGTGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGTGCA-GGAAAGGGCTCGCC------CGATGGCGTGGAGCCTGGC-TGTCCCCCTCTCCTT-AAATGTGCCTTCCCCTCACTGAAGCCATCTCACTCCGTGCAACGGAGATGACAGTGCCCCTCTAAGAACGAACAGTGCCTCCTGgggattccgcaagtcaggcgctctgcatgtagttagcatac----aataggtgctcaataaatAAACTGCGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGCGCtcatgtattcattaaatgtttttaagctgctcttttgtgctagacactgttccagccatgtgaaatacatcagtgggggga-aactaagacgaaggCGAGATCAAGGGAGGTTTCGTGGAAGTGGCCACAAGGTTTGCAGAGCAACGTCCTCGAAAACGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACACTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAACCGCGGCGCGTGCGCGCTGGGCTC-CGGCGGTCAGCCCGGCCGGCCTCCGAGCTTACCTCTTGCTGAGCCAGCAGCGCCCTCCGCTCACGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGATG-CCCCCCTTCCTCTTGTCCCTACTTCGACCGCAGATTGGTTCCGAATTAGTTGGTACGGCCC--CCTGGCCTGTAACGACAGGTGATTGGCTGAGACGTCCTTT-TCACAGCGAATGTTAGGCGTTCGACTCGTGGTATCCCCTAGCAACCGCCTCTTATCACAGATCTGAACCAATCATAAGTTGGCCCGCCCC--GATGCTACCAGATGCGGCCGTCGATTG-------------GTCGACATGACCGTCAAGTCTCCTTGCGGAAGTGCGCTCCGCACCGACAAACATGCCCATACATTTGATTGGCTCCTGCCCTGCGGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGAAAGATCACC-CGAGAGTCAGGGACGT-GGCG-----GCGAGGGGCCCTGGAaatctccagataccaaagctggaagggcgtggagtcttctccagttctcctag-tttacagatgttgtgacctaggcttaCAATGGGCCTGGGGTCTG---AAAGTGGGGCGT-----------GAGCTGCGGGGGTCAAAGAGCCGGTTCGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------CGGCAAAGAGAGGTGGAGGTGTGGCAGCCCTCTTCCC-CAGCCCCTCTCCGTGTTCCCCG--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCCCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccCGAGCCACAGTGTACGCCATCAGGATGCTGGAGGAGACAGGAACGGAAACCACTCCTGACACGCT---------------------------CTTCGAAGTCAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55021643 2477 +  59248254 ATGG-------CAACACTTCTTAAGTGTCATGCTTTGGTATGGTTCTAAA---TTCTGTGTGTTCGTTCTCGTTTGACCTTGATCACAAGCAGTGGCTAAAGTGCCCTCTCCCCCCA------ACTCGATTCATGGCTCCT--CTAATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCCTCTGATCACTCCTTTCCCTTCCTCCAGCAGCTCCCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTTCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATAGGCAGGGCATTCAGAACCTAGAGGT------G-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGCAGTC------------------------------CAGGGT--GCTGGGGTTATA-AGAAAGGGAGCACTAGACGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGGTGAGGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTGC--CTTTCAAATCGTAAACCACGGGTCATCAAGGATGGCTGGAAGGAGGTCCCTGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTAGACCAA--ACTGCATTA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTCACTACCCCAAGT--------------------------------------------CGACTGCTGAAGCCCT-----------------------GTCCCCCGCC----------------------------TTCAGGACGCAGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCCAGACTACCTCC---------------------------CACCCACTGTGG---AGGATCAGACTAGCTAAGGAACTGAAAGTTGGGTGTACACCAAACAGATTTAAGGAGCCATACAGAAAGCCCGTGTTTGTGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGTTCA-GGAAAGGGCTCGCC------CGATGGCGTGGAGGCTGGC-TGTCCCCCTCTCCTT-AAATGTGCCTTCCCCTCACTGAAGCCATCTCACTCCGTGCAACGGAGATGACAGTGCCCCTCTAAGAACGAACAGTGCCTCCTGgggattccgcaagtcaggcgctctgcatgtagttagcatac----aataggtgctcaataaatAAACTGCGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGCGCtcatgtattcattaaatgtttttaagctgctcttttgtgctagacactgttccagccatgtgaaatacatcagtgggggga-aactaagacgaaggCGAGATCAAGGGAGGTTTCGTGGAAGTGGCCACAAGGTTTGCAGAGCAACGTCCTCGAAAACGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACACTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAACCGCGGCGCGTGCGCGCTGGGCTC-CGGCGGTCAGCCCGGCCGGCCTCCGAGCTTACCTCTTGCTGAGCCAGCAGCGCCCTCCGCTCACGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGATG-CCCCCCTTCCTCTTGTCCCTACTTCGACCGCAGATTGGTTCCGAATTAGTTGGTACGGCCC--CCTGGCCTGTAACGACAGGTGATTGGCTGAGACGTCCTTT-TCACAGCGAATGTTAGGCGTTCGGCTCGTGGTATCCCCTAGCAACCGCCTCTTATCACAGATCTGAACCAATCATAAGTTGGCCCGCCCC--GATGCTACCATATGCGGCCGTCGATTG-------------GTCGACATGACCGTCAAGTCTCCTTGCGGAAGTGCGCTCCGCACCGACAAACATGCCCATACATTTGATTGGCTCCTGCCCTGCGGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGAAAGATCACC-CGAGAGTCAGGGACGT-GGCG-----GCGAGGGGCCCTGGAaatctccagataccaaagctggaagggcgtggagtcttctccagttctcctag-tttacagatgttgtgacctaggcttaCAATGGGCCTGGGGTCTG---AAAGTGGGGCGT-----------GAGCTGCGGGGGTCAAAGAGCCGGTTCGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------CGGCAAAGAGAGGTGGAGGTGTGACAGCCCTCTTCCC-CAGCCCCTCTCCGTGTTCCCCG--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCCCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccCGAGCCACAGTGTACGCCATCAGGATGCTGGAGGAGACAGGAACGGAAGCCACTCCTGACACGCT---------------------------CTTCGAAGTCAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47127900 2452 +  51301725 ATGG-------CAACACTTCTTAAGTGTCATGCTTTGGTATGGTTCTAAA---TTCTGTGTGTTCGTTCTCGTTTGACCTTGATCACAAGCAGTGGCTAAAGTGCCCTCTCCCCC--------------------GCTCCT--CTAATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCCTCTGAtcactcctttcccttcctccagcAGCTCCCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTTCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTATAGGCAGGGCATTCAGAACCTAGAGGT------A-ATTCA--AAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGCAGTC------------------------------CAGGGT--GCTGGGGTTATA-AGAAAGGGAGCACTAGACGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGGTGAGGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTGC--CTTTCAAATCGTAAACCACGGGTCATCAAGGATGGCTGGGAGGAGGTCCCTGGCCTAAACCAAAGGggttcctaacctcaagtgagaCAATTAAAA-------------------------------CAGCCATA---------------------------------------------------------------------AAGGTAGACCAA--ACTGCATTA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTCACTACCCCAAGT--------------------------------------------CGACTGCTGAAGCCCT-----------------------GTCCCCCGCC-----------------------------TCAGGACGCGGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA-----------------------GAGATTCTAAAAACCCAGACTACCTCC---------------------------CACCCACTGTGG---AGGATCAGACTAGCTAAGGAACTGAAAGTTGGGTGTACACCAAACAGATTTAAGGAGCCATACAGAAAGCccgtgtttgtgtgtatgt--------------------------------------------------------gtctagggGGC-------------------------------------------------------------------------------GGTGCA-GGAAAGGGCTCGCC------CGATGGCGTGGAGCCTGCC-TGTCCCCCTCTCCTT-AAATGTGCCTTTCCCTCACTGAAGCCAT----CTCCGTGCAACAGAGATGACAGTGCCCCTCTAAGAACGAACAGTGCCTATTGGGGATTCCGCAAGTCAGGCGCTCTGCATGCAGTTAGCatac----aataggtgctcaataaataggcTGCGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGCGCTCATgtattcattaaatgtttttaa---gcttttttgtGCTAGACAGTGTTCCAGCCATGTGAAATACATCAGTGGGGGGA-GACTAAGACGAAGGCGAGATCAAGGGAGGTTTGGTGGAAGTGGCCACAAGGTTTGCAGAGCAACGTCCTCGAAAACGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACACTGAGCCTGCGCAACGCCTCCGCTTCCGGTCCCCAACCGCGGCGCGTGCGCGCTGGGCTC-CGGCGGTCAGCCCGGCCGGCCTCCGAGCTTACCTCTTGCTGAGCCAGCAGCGCTCTCCGCTCacgctccttctcctcctcccggGCCTGGGCCTCGTCACGCCGCACGCGGGCAACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCTCTTTGCACTTCCGATTGGCGAGAGGATG-CCCCCCTTTTTCTTGTCCCTACTTCGACCACAGATTGGTTCCGAATTAGTTGGTACGGCCC--CCTGGCCTGTAACGACAGGTGATTGGCTGAGACGTCCTTT-TCATAGCGAATGTTAGGCGTTCGGCTCATGGTATCCCCTAGCAACCGCCTCTTATCACAGATCTGAACCAATCATAAGTTGGCCCACCCCT-GATGGTACCAGATGCGGCCGTCGATTG-------------GTCGACATGACCGTCAAGTCTCCTTGCGGAAGGGCGCTCCGCACCGACAAACATGCCCATACATTTGATTGGCTCCTGCCCTGCggtagccctgcccccaccttcaGGACGCAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGAAAGATCACC-CGAGAGTCAGGGACGT-GGCC-----GCGAGGGGCCTTGGAAATCTCCAGATACCAAAGCTGGAAGGGCGTGGAGTCTTCTCCAGTTCTCCTAG-TTTACAGATGTTGTGACCTAGGCTTACAATGGGCCTGGGGTCTG---AAAGTGGGACGT-----------GAGCCGCGGGGGTCAAAGAGCCGGTTTGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------CGGCAAAGAGAGGTGGAGGTGTGACAGCCCTCTTCCC-CAGCCCCTTTCCGTGTTCCCCA--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCTCTCTGACGTTTGAGCTCAGAGATGAGGCGTCCGTAGGAATTAGCCCGAGCCACAGTGTACGCCATCAGGATGCTGGAGGAGAAAGGAACGGAAGCCACTCCTGACACGCT---------------------------CTTCGAAGTCAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46839008 2477 +  50890351 ATGG-------CAACACTTCTTAAGTGTCATGCTTTGGTATGGTTCTAAA---TTCTGTGTGTTCATTCTCGTTTGACCTTGATCACAAGCAGTGGCTAAAGTGCCCTCTCCCCCCA------ACTCGATTCATGGCTCCT--CTAATGAA-------GTGGGTGAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTACTCTTTATTGCCTCTGATCACTCCTTTCCCTTCCTCCAGCAGCTCCCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCGCCTCTGCTGCTTCAAGCTCAGGCAGTGAGTTCTGATGTCGGGCTTTCTTTCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTCATAGGCAGGGCATTCAGAACCTAGAGGT------A-ATTCAAGAAC-TGT-----------GAGTCTGGTG------CCCACCACAGAAAATGGCAGTC------------------------------CAGGGT--GCTGGGGTTATA-AGAAAGGGAGCACTAGACGCCTAAAAGAGGCACCTGTCCT---AGCTGGGGGTGAGGGTAGG---------------CAGATGAGGCAACGC------CTGGGTTTTGTAAACTGC--CTTTCAAATCGTAAACCACGGGTCATCAAGGATGGCTGGGAGGAGGTCCCTGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CCGCCATA---------------------------------------------------------------------AAGGTAGACCAA--ACTGCATTA-GGCCAGACGATCTGAATTCTAGCCATGGCTCCAAGTCACTACCCCAAGT--------------------------------------------CGACTGCTGAAGCCCT-----------------------GTCCCCCGCC----------------------------TTCAGGACGCGGATTT----------------------------------------CAAACAGCGCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCCAGACTACCTCC---------------------------CACCCACTGTGG---AGGATCAGACTAGCTAAGGAACTGAAAGTTGGGTGTACACCAGACAGATTTAAGGAGCCATACAGAAAGCCCGCGTTTGTGTGTATGT--------------------------------------------------------GTCTAGGGGGC-------------------------------------------------------------------------------GGTGCA-GGAAAGGGCTCGCC------CGATGGCGTGGAGCCTGGC-TGTCCCCCTCTCCTT-AAATGTGCcttcccctcactgaagccatctcacttcgtgcaacggcgatgacagtgcccctctaagaaggaacagtgcctattggggattccgcaagtcaggcgctctgcatgtagttagcatac----aataggtgctcaataaatagGCTGTGCAGGCAAACTAAAAAGTGATCCGAATTTCCTTGAACTGTCCAAGCGCtcatgtattcattaaatgtttttaagcttctcttttgtgctagacactgttccagccatgtgaaatacatcagtgggggga-aactaagacgaaggCGAGATCAAGGGAGGTTTCGTGGAAGTGGCCACAAGGTTTGCAGAGCAACGTCCTCGAAAACGGG-------------ATCGGCGCCTGGTCCCGAATTTCACACGGGGCACACTGAGCCTGCGCAACGCCTCCGCTTCCGGCCCCCAAACGCGGCGCGTGCGCGCTGGGCTC-CGGCGGTCCGCCCGGCTGGCCTCTGAGCTTACCTCTTGCTGAGCCAGCAGCACCCTCCGCTCACGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCTGTCCAGGGACTGGCACGCCCGCCGCTTTGCACTTCCGATTGGCGAGGGGATG-CCCCCC-TCCTGTTGTCCCTACTTCGAccacagattggttccgaattagttggtacggccc--cctggcctgtaacgacaggtgattggctgagacgtccttt-tcacagcGAATGTTAGGCGTTCGGCTCGTGGTATCCCCTAGCAACCGCCTCTTATTACAGATCTGAACCAATCATAAGTTGGCCCGCCCCT-GATGCTACCAGATGCGGCCGTCGATTG-------------GTCGACATGACCGTCAAGTCTCCTTGCGGAAGTGCGCTCCGCACCGACAAACATGCCCATACATTTGATTGGCTCCTGCCCTGCGGTAGCCCTGCCCCCACCTTCAGGACACAGATTTCAA--AGCGCGCTCAGCAACCTCGGCTG-TATTTATTGATACAAGAAAGATCACC-CGAGAGTCAGGGACGT-GGCG-----GCGAGGGGCCCTGGAaatctccagataccaaagctggaagggcgtggagtcttctccagttctcctag-tttacagatgttgtgacctaggcttaCAATGGGCCTGGGGTATG---AAAGTGGGACGT-----------GAGCTGCGGGGGTCAAAGAGCCGGTTTGGTGGAGGTCAGCGCCACAGCGCGCCGTGCCAGGAAGACTTTATTCTGCGCCTCCTG------------GGGCAAAGAGAGGTGGAGGTGTGACAGCCCTCTTCCC-CAGCCCCTTTCCGTGTTCCCCA--GGGGCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCTCTCtgacgtttgagctcagagatgaggcgtccgtaggagttagccCGAGCCACAGTGTACGCCATCAGGATGCTGGAGGAGACAGGAACGGAAGCCACTCCTGACACGCT---------------------------CTTCGAAGTCAGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45412046 2430 +  49145316 ATGGCAACAGCCACCACTTC-TGAGTG---TGCTTTGGTATGGTTCTAAA---TTCTGAGTGTTCACTCTTGTTTAGCCTTAGTCACAACCAATGGCTAAAGTGTCC-CTCCCCCCA------GCTCCATTCATG---TCT--CTGATGAA-------GTAGATAAGGC---CAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCGTGCTCTTTATTGCCTCTGATCAGGCCTTTCCCCTCCTCCAGCAGCTCTCGAAACAGGTCCACAGGGCCAGAACTTGGGGCTCCCACCTCTGCTGCCTCAAGCTCAGGCAGTGAGTTCTGATGTCTGGCTTTCTTCCGTAGGAATTCTGTACGGGCCTGGGG---AGAAAGTTACAGGCAAGACATTAAAAACCTAAAGGT------A-ATTCAAGAACTTTT-----------AAGTCTGGTG------CGCACCACAGGAAACAGCAGTC------------------------------CAGGGT--GCTGGGTTTGTA-AGAAAGGG--------------------GGCACCTGTCCT---AGC-AGGGGTGAGGGTAGG---------------CAGATAAGGCAACAC------CTGGGTTTTGTAAACTGC--CTTTCAAATAGTAAACCACA---CATCAAGGATGGCTGGGAGGAGGTCCCTGGCCTAAACCAAAGGGGTTCCTAACCTCAAGTGAGACAATTAAAA-------------------------------CAGCTATA---------------------------------------------------------------------AAGGTAGAACAA--ACTGCATTA-GGTCAGATGATCTGGATTCCAGGCATGGCTCCAAGTCATTACCCCAAGT--------------------------------------------CCATTGATGAAGCCCT-----------------------GTCTCCCACC----------------------------TTCAGGAC---------------------------------------------------AAAGCTCTCAGCAGCCTA---------------------CTGAGATTCTAAAAACCCAGACTACCTCC---------------------------CTCCCAGTGTGG---AGGATCAGACTGGCTAAGGAACTGAAAGTTAGGTGTACACCAAACAGATTTAAGGAGCTATACATAAAGCCCATGTTTGTGTGTGTGT--------------------------------------------------------CT---GGGGGT-------------------------------------------------------------------------------GGTGCAGGGAAAGGGCTCGCC------CAAGGGGGTGGAGact---------tcccctccct--------------------tgacgccatctcacttcgtgccacggagatgacaatgcctctttaagaaagaacggtgcttaagggggattctggaagtcaggcgttctgcatgcagttagcatac----agtaactgctcaataaatagACTGTGCAAGCCAACTAGAAAGTGATCCGAATTTCCTCAAACTGTCCAAGGAATCCTGAATTCGGTAAACA--TTTATGCTTCTCTTTTGTGCTAGACACTGCTCTAGCCATGTGAAATACATCAGTGGGGGGA-AAC-AAGACGAGGGGGCGATCAAGGGAGATTTCATGCAAGTGGGCACAACGTTTGCCGAGCAACGTT-TCGGAAAAGAG-------------GTCCGCGCCGGGTCACGAATTACATACGGGGCACACGGCGCCTGCGCAACGCGTCCACTTCCGGCCCCCTACCATGGCGCCTGCGCGCTGGGCCC-CGGAGTTCCGCCCGGCCGGTTCCCAGGCTTACCTCCTGCTGAGCCAGCAGCACCCTCCGCTCACGCTCCTTCTCTTCCTCCCGGGCCTGGGCCTCGTCACGCCGCACGCGGGCAACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCAGTCCACGGACTGGCACGCCCGCCTCTCTGCACTTCCGATTGGCGAGAGAATG--CCCCCTCCCTCTTGTCCCTACTTCGACCACAGATTGGTTCTTAACTCATTGGTACGGCCC--CCTGGCCTGTAACGACAGGTGATTGGCTAAGACGCCCTTTATCTCAGCGAATGCCAGGCTTTTGGCGCGTGGTATCCCCTAGCAACCG---CTTTTCACATATCCGAGCCAATCGCAAGTTGGCCCTCCCCT-AATG---CCAGATTCGGCCGCCTATTG-------------GCCAACACAACCATCAAGTCTCCTTGCGGAAGAGCACTTCGAACGGCCACACATTCCCATGCATTTGATTGGCTCCCGCCCTGATGTAGCCCTGCCCCCACCTTCAGGACGCAGATTTCAA--AGCGCGCTCAGTCACCTCGGCTG-TGTTTATTCATAGAAGAAAGATCACC-CGAGAGTCTGGGACGT-GGCG-----GCGAGGGTCTCTGGAAATCTCCAGATCCTAGAGCTGGAAGAGCGTGGGGTCTTCTCTAGTTCTCCTAGTTTTACAGA---TGTGACCTAGGCTTACAATTGGCCTGGAGTCTG---AAGGTGGGACAT-----------GGGCTGCAGGGGTCAAAAAGCCGGGTGGGTGGAGCTCAGCGCCACAGCGCGCCGTGCGAGGAAGACTTTGTTCTGCGCCTCCTG------------AGGCAAAGAGAGGTGGAGGTCAGACAGCCCTCTCCCC-CAATGCCTTTCAATGTCCCCCACGGGGTCCCTCT--CAGGG---ACCCGCCTGG-CTCACCGTCTCTCTCtgacgtttgagctgagagatgagacgaccgtaggagttagccagAGCCACAGTGTACGCCATCAGGATGCTGGAGGAGACACGAACAGAAGCCACTCCTGACACGCTCCTCCATTCTATACAAACGCCTGGCTCCTTCAAAGCCAG-
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3663549 2703 + 145441459 ACAGCAGTAACCAAC---TTACAGGTAATATCTCTCAGTCATATTCTAAAAATTTTAGAGTGCTTATCACCATATCCTAACAGTCACAGCCAGT-----------CCCCACCCCC-----------------ATGATTCCA--CCAAAAAA------------TGAGGC---CAACTTACCTTTTCCCGTCGCTTCTCTTCCTCATGCTCTTTATTGCCTCTGGGAACTCCTTTCCTTTCTTCCAGCAGCTCCCTAAACAGGTCCACAGGGCCAGAACTTGGAGCTCCTGGGTCTGCTGCTTCCAGCTCAGGCACTGAGTTTCGTTGCCTGGCTTTCTTCCGTAGGAATTCCGTACGGGCCTATGA---AG--GGTTATAGGGAAGACATTCAGAACCCAGAAGTGCTGAGG-ATACAAGAAT-GGTCCATGGGCAGGGAgggcagtggtagcacacacctttgaacctagcattcaggagacagaggcacatggatctctgaattcaaggccagcatggtctacagagtgagttagttccaggactacacagaaaaatcctgtcttgaaaagaGGGGGTGGGGGTGGGGCAAATATTGAGAGCAAGAAGAGATACCATTTCTAACTTGGAGTGGAGAATCGATGTTTTTAGACAGTAAAC--TGGGCTATCAGAGATAGTTCAGAGAAGATCCCTGACCTAAAACAGAAGGCTTCCCAGTCTCAAGTGATGCAAGGAAAACCCACTCAGGTATAGGTATAGGTGGCTTGTTCAGCCATAGAGCCCCTGCCTTGTGTGTAGTTCCAAATTCAGTCCCCAACACAAGTATGTATATACTCCCAAACTTGTAAGGTAATCAAA-TATTGCTTTCTGGACAAAGGATCTAAATCCAAGGTATGGCTCCAGGTCACCACTCCAAGTACAACCTGACCCCAGATAGGGATGGTCTCTGATTCACAATTCTCCCCTTTCTGCAGCCTTAGTATCTGGGATTAATTACAAGCGTCACCTttttgtttgtttgttttgttttgttttgttttttaagacagggtttttctgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctcagaaatccacctgcctctgcctcccaggtgctgggat--caaaggcgtgcgccaccgccactacccggctTTTTTTTTTTTTTTTAAGCCCACACTAATTCATGATCAGATTGGCCAAGGGACTTAA------GTGTAAACCAAACTAATCGAGTA------ACTTAGAGTCTgtg---atgtgtgtgtggtcttcaatactagcgttcaagtggaacaggcaagctgagttcaagaccagcctggtctacgtagccagttccataacagccacggctacacagaccctgttccaaataaaacCTCCAGATGCTCTTTTCTTGGCAAGCAATGAGGGAGGG-AGAAAAGACATGCC------CAACGAAGTGGACCCCGGCTTGTCCGCCCTTTGCC------------CTCCTTGCTGAAGCCGTTGTACTCAGAGCAA----GGTGACCGCACCCCTCCAAG------TTGTTCTAAGAGGGAATTTCTCAAAGCAAGCGCTCAGAAGGAAGGGAGCATACACAGAGTGGGTGATCAGTAATTAACTTGTGCGGGCAACCTATAAAGTAATCAGAAT-------ATTTGTCCAA------------------------------CTCTTCCAGTATGCTAGTCTCTGGTCCCTCA---------ACACCAGTGGGGAAA--------------------TCTAGGAAGGTTTCTTGGAAGTTAGCACAGGATTTTCAGAGAAACATCGTCGAA--------------------------------------------------CACACAGA--------------CCCGCTCCCGGCAC----------CGAGTGATAGCTAGGCCCGCCGCGCT---TCTGGGCGGTCCCCAGGCTTACCTCTTGCTGGGCGAGCAGCACCCTCCGCTCCCGCTCCTTCTCCTCCTCCCGGGCCTGGGCCTCGTCGCGCCGCACGCGGGCAACATTGTCCTTGTTCCGGACGTGCCAGCTCTTCTTCGGCAAGATATTCATGGCTCCAGTGCCGACCTCGGACTGTCAGGCCCACTCTTCAGCACTTCCGATTGGCTCGAGGATG--CTCCCGCCCCATGGTTCCACCCTTGCTCGTGCATTGGTTCTGGGCCAATTGTCACGTCCCATCCTAGCCT-TGTTTAGAGATTATTGGCTGAGA-GCCTTCCATCTCAGCCAATCCTAAGCATTT------------------GTAACC----------------------------TGAGTTGCTCCACCCCCGGACGCTGCTTGATGAGGCTGTTGCCTGTCTATTCCTTTAAGCAGACATAACC--TAGCTCTTC-------AGGCCGATTTGGACC------------------------TGGCCCCTCCCCA-----AACCCCGTCCGAGGCTTCAGAACG-GGGTTTCAA--AACGCA--AAGCGGCCTTGACTGTTGTTTATTAATAC-----GGTTCAAT-TGAGAGTGTAGCATTCGGGTG-----GCAGAGGGC--GGGGAATTT---GGTTCCAGAGATGAAAGAG------------------TCCCATCA-CTTG-ATATGAAGTCACTGAAGCTGA-----------GGGGCTG---AAGGT------T-----------CAGCCAGACTTATCAGGAAGTTCCATTCCTTGAGCTCAGAGCCACAGCTCGCTGGGCCAGGAAGACTTTATTCTGCACTTCCTG-----------CGGGCAAAAAGGAGCGAAAGTGAAGCACACCTTTT----CATTCTTCTTTCATAGTCTCAT--AGAGCCCTTT--CCGGGGAAATCAGCCTGG-CTCACCGTCTCTATCTGGCGTTTGAGCTCAGAGATGAGGCGTCCGTAACAGTTAGCCAGGGCTACGGTATACATCATCAGGATGCTATGGAAGACAGGAATGAAAATCACTCTAGAAAAACA-----ATCATCTTCAT-CATATGGCTCCTTAGAAACCAgg
i mm10.chr7                 I 254 I 288
s canFam3.chr1               19622991 2203 - 122678785 GTGCCAATAACCCACACTG--GGAGTGCTGTGTTCCAGTA-----CTGAG---TTCTCTGTGTCAG--CTCATTTCATCCCCACCCTAC---------------CTCTCTGTTCCCATCAGTCACCCCAGACTTTACCCCTGACTGACAGGGACGGGTGTGGGGGGGGCGCGCAGCTTACTTTCTCCTGTCGCTTTTCTTCCTCATACTCTCTATTGCCTCTGGTCGCCCCTTTCCCTTCCTCCAGCAGCTCCCGAAATAGGTCCACAGGGCCAGAACTGGGGGCTCCCGCCTCTGCTGCTTGGAGCTCAGGTAGCGAGTGCTGGTGCCTGGCTTTCTTCCGTAGGAATTCTGTGCGGGCCTGGGGGAAAGAAAGTTACAGGCAGAGCATTCATTGCCTAGCCAT------GCCTCCAAGAAC-TGT-----------GAGACCGGTG------CCAAGCACAGAGAAT-------------------------------------CCCCGT--GCTGGTGCTGAG----------------GGCTCATCAGAGCATCACCCAGCCT-------GGGGGAGAGGATGGG---------------AGAATGAGGTGACAC------CTGGGTTT-GTACGCTGC--CTTT-----GGTGAACCA-------------------------------------------GAAGGGTTTCCCAACCTCAGCTGGCACAATAAAAA-------------------------------CAGCTAGG---------------------------------------------------------------------AAGGCAGCCCAAAATTTGC-----GAGCAGGCGACCAGAAATACAG-TAAGGCTCCAGATCACTGTCCC---T--------------------------------------------CGACCAC----GTGCA-----------------------ATCTGCTGAC------------------------------------------------------------------------------------CAAA--------------------------------------GTGAGCTT-TAAAAGCCCAGACCACCTCC---------------------------CGGCCAGCGGTG---AGGGCCAGATTCGTTAACAAACTTCAAACTCCGTGCACACTAGA-AGCT---AGAAGTTACTCCGAGAACCCCCG---------------------------------------------------------------------GGGTTGGGGGC-------------------------------------------------------------------------------CGCG-G-GGAGAGGGCTGGCC------CCACAGGGGGA----TGGG-TACGTCCCACTTCTC------------------------------------TGCACAGCGGAG--GGCAGTG-CCCTCTGGGCACGAACAGAGC----------------AGGTCCAGCGCTCTGCTCGGGGCGAGCATAC----AGCAGACGCTC--CAGAGGGGTCGGGCAGGAACACTAAACGTGGGTCTGCGTTTCTTTGAACTGCAC-AGGATTCATTTTTTCAGCA-----------GCCCCTACTCTAAGCCAGGCAC-ACCCCGGCCTCACGCAAAACG--AGTGGCGGAA--ACCAGGGCAAAGGGGAGGCCCAGGTGGG----------GAAGCCTCA----------GGTAGGGCCCGCGCAGGCGAGCCCCTGCGTTTCCAACCGCGCCCAGCTCCTCCAGCCTCACGGGAGGCACTGCGCGTGTGCGCCATC-CCGCTTCCGGCCCCTCCCCCACGCGCCTGCGCGCTCGGCCC-GGGAGTCGCGTCCGACCGCACTCGGGGCTTACCTCCTGCTGAGCGAGCAGCACCCTCCGCTCACGTTCTTTCTCCTCCTCTCGGGCCTGAGCCTCGTCACGCCGCACGCGGGCGACATTGTCCTTGTTCCGGACGTGCCAACTCTTCTTGGGCAAGATATTCATGGCGTCGTAGCCGTCCACCGACTG-CAGGCCCACCTCTGAGCACTTTCTATTGGCGAGAGGATG---CCGTTCCCTGTTGTTCCTGCCTCAGCTACGGATTGGCCCTGGGCTGGCTGCCACGCCCC-TCCAAGTCCGTAGCGAGCGCTGATTGGCTGAGATGCC---------------------GAATTCGGGT--TGGTGTAGCCTGGAGACCGCCTCTTCACCAGGTCCTGAGCCAATCAC---TTGTCCCCGCCCT-GAAGCTACGGGACGCGGCCGCTGATTG-------------GCTGGC-------------CTTCTCGAGG--------------CCGATA-------------ATCTGATTGGCC-------------GGC-------------TCAGGATGCAAGTTACAAACAAAGCGCTCTGCAGTCTCAGCGG-CGTTTATTGGTACGAGAAAGGTTAACGCGAGAGTGAGGG-----GGTG-----TC--AGGGCCCCGGAAATCT-------CCGCAGCCGG--GGACTTAGGGTCTTCTCAAGTTCTCT----TTTACAGATGAGGTG---CGGGCTTCCATAGGGTCCGGGGGCAGGATGAAGTGGGCCATGGTCCCGAGCAGGGCTAGGGAGGTCGAAGAGCCCCGGTGGCCGAGCTCAGTGCCACAGCGCGCTGTGCCAGGAAGACCTTATTCTGCGCCTCCTGGGTAGAGGTAAAGGGTAAAGAGAAGTGCAGGTGAGGCCGACCGCTCCCCACCATTTCTTTCAACATCC------AGGACCCCCTACCATGA---ACCCGCTTTGCCTCACCGTCTCTATCTGGCGTTTGAGCTCAGAGACCAGACGTCCATAGGAGTTAGCCAAGGCCAGGGTATATGCCATCAGGATGCTATAGG-GACGGAAATGGAAGCCATACCCAGGGGGCTCTTAGCATATCTTCAGTGTAAAGGCTCCTTAGAAACCGGG
i canFam3.chr1              C 0 C 0

a score=84819.000000
s hg38.chr19_GL949751v2_alt    135474 36 +   1002683 gatgtggacgcctaagcccctcctcgtctgggctca
s panTro4.chr19              59069540 36 +  63644993 gatgtggacgcctaagcccctcctcgtctgggctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55946242 36 +  60714840 gatgtggacccctaagcccctcctcgtctgggctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102712274 36 - 106955855 gatgtggacccctaagcccctcctcgtctaggctca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59999478 36 +  64156825 GATGTGgacccctaagtccctcctcgtccaggctca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55024120 36 +  59248254 GATGTGgacccctaagtccctcctcgtccaggctca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47130352 36 +  51301725 GATATGGACCCCCAAGCCCCTCCTCGTCCAGGCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46841485 36 +  50890351 GATGTGgacccctaagcccctcctcgtccaggctca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45414476 13 +  49145316 GATG-------------------TCATCTA----CA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19625194 28 - 122678785 GATCTGGACTCCC-AGCCCCACCCCACCC-------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3666252 288 + 145441459 I

a score=2513756.000000
s hg38.chr19_GL949751v2_alt    135510 672 +   1002683 aggagttcagtctcc-cagcccctccgcct---tcagatccaggagtcctacgtcccgcccacctcctccttcggacccagcagtcc--aggagcctag--gcctcctccctcagactcagtacgtt-------------gcctgctc--------------------ccacgcccaagcctct-----------------------cctctcttggacgcaggTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGGCCGTCTCACCTGGAGATCAGCAGAAGGGGCACAGCAAAAGCCTGGGTCCCCAGGAAGAAGAGGAAATTCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACAAAGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGCTCACATAGTGCCAGGAGTCTGAACACTGAATGgggagagagggaggga-------------gag-aggcgggagCCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGGACCAAGGGGAAAAAGAAATTCGCCGCGGAGGCCCGGAAGGTGCGGGCAGCCGGGGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGG-AAGGCACGGAGAAAAGGGCTCTGAAACA-CAAGAGTCTGTGCCT---CCAttttttttttttttt
s panTro4.chr19              59069576 672 +  63644993 aggagttcagtctcc-cagcccctccgcct---tcagatccaggagtcctacgccccgcccacctcctccttcggacccagcagtcc--aggagcctag--gcctcctccctcagactcagtacgtt-------------gcctgctc--------------------ccacgcccaagcctct-----------------------cctctcttggacgcaggTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGGCCACCTCACCTGGAGATCAGCAGAAGGGGCACAGCAAAAGCCTGGGTCCCCAGGAAGAAGAGGAAGTTCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACACAGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGCTCACATAGTGCCAGGAGTCTGAACACTGAATGGGGAGAGAGGGAGGGA-------------GAG-AGGCGGGAGCCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGGACCAAGGGGAAAAAGAAATTCGCCGCGGAGGCCCGGAAGGTGCGGGCAGCCGGGGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGG-AAGGCACGGAGAAAAGGGATCTGAAACA-CAAGAGTCTGTGCCT---CCtttttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55946278 673 +  60714840 aggagttcagtctcc-cagcccctccgcct---tcagatccaggagtcctaagtcccgcccacctcctccttcggacccagcagtcc--aggagcctag--gcctcctccctcagactcagtacgtt-------------gcctgctc--------------------ccacgcccaagcctct-----------------------cctctcttggacgcaggTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGGCCACCTCACCTGGAGATCAGCAGAAGGGGCACAGCAAAAGCCTGGGTCCCCAGGAAGAAGAGGAAGTTCTGGGTGGTCTCAGGGAGCCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGGCTGTCCCCGGAATGGACCACACAGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGCTCACATAGAGCCAGGAGTCTGAACACTGAATGCGGGGAGAGGGACGGA-------------GAG-AGGCGGGAGCCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGGACCAAGGGGAAAAAGAAATTCGCCGTGGAGGCCCGGAAGGTGCGGGCAGCCGGGGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGG-AAGGCACGGAGAAAGGGGATCTGAAACACCAAGAGTCTGTGCCT---CCtttttttttttttttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102712310 668 - 106955855 aggagttcagtctcc-cagcccctccgcct---tcagatccagcagtcataagtcccgcgcacctcctccttcggacccagcagtcc--aggagcctag--gcctcctctctcagactcagTATGTT-------------GCCTGCTC--------------------CCACGCCCAAGCCTCT-----------------------CCTCTCTTGGACGCAGGTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGGCCACCTCACCTGGAGATCAGCAGAAGGGGCACAGCAAAAGCCTGGGTCCCCAGGAAGAAAAGGAAGTTCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACACAGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTAGGCTCACGTAGAGCCAGGAGTCTGAACACTGAATGGGGGGAGGGGGAGGGA-------------GAG-AGGCGGGAACCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACACTGGAGATGGCCAGACCCAGGAGAAGGACCAAGGGGAAAAAGAAATTCGCCGTGGAGGCCCGGAAGGTGCGGGCAGCCGGGGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGG-AAGGCACGGAGAAAGGGGATCTGAAAAA-CAAGAGTCTGTGCC-------ttttttttttttttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              59999514 667 +  64156825 aggagttcagtctcc-cagcacctccgcgt---tcagatccaggagtcctaagtcccgcccacctcctccttcggacccagcagtcc--aggagcctag--gcctcctccctcagactcagtacatt-------------gcctgctc--------------------ccacccccaagccttt-----------------------cctctcttggacgcaggTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGCCCACCTCACCTGGAGATCAGCAGAAGGGGCGCAGCAAAAGCCTGGGTCCCCAGGAAGAAGAGGAAGTTCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCACATGGACGACTGCCCCCGGAATGGACCACACGGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGTTCAAGTAGAGCCAGGAGTCTGAACACTGAATGGGGGGAGAGGGAGGGA-------------GAG-AGGCGGGAACCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGAACCAAGGGGAAAAAGAAATTCGCCGTGGAGGCCCGGAAGGTGCGGGCAGCCGGAGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGGTAAGGCACGGAGAAAGGGGATCTGAAACA-CAAGAGTCTGTGCC-------TTTTTTTTTTTTT--
i rheMac3.chr19             C 0 M 1177
s macFas5.chr19              55024156 663 +  59248254 aggagttcagtctcc-cagcacctccgcgt---tcagatccaggagtcctaagtcccgcccacctcctccttcggacccagcagtcc--aggagcctag--gcctcctccctcagactcagTACATT-------------GCCTGCTC--------------------CCACCCCCAAGCCTTT-----------------------CCTCTCTTGGACGCAGGTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGCCCACCTCACCTGGAGATCAGCAGAAGGGGCGCAGCAAAAGCCTGGGTCCCCAGGAAGAAGAGGAAGTTCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACACGGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGTTCAAGTAGAGCCAGGAGTCTGAACACTGAATGGGGGGAGAGGGAGGGA-------------GAG-AGGCGGGAACCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGAACCAAGGGGAAAAAGAAATTCGCCGTGGAGGCCCGGAAGGTGCGGGCAGCCGGAGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGGTAAGGCACGGAGAAAGGGGATCTGAAACA-CAAGAATCTGTGCC-------tcttttttt------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47130388 666 +  51301725 AGGAGTTCAGTCTCC-CAGCACCTCCGCCT---TCAGATCCAGGAGTCC-AAGTCCCGCCCACCTCCTCCTTCGGACCCAGCAGTCC--AGGAGCCTag--gcctcctccctcagactcagTACATT-------------GCCTGCTC--------------------CCACCCCCAAGCCTTT-----------------------CCTCTCTTGGACGCAGGTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGCCCACCTCACCTGGAGATCAGCAGAAGGGGCGCAGCAAAAGCCTGGGTccccaggaagaagaggaagttCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACACGGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGCTCAAGTAGAGCCAGGAGTCTGAACACTGAatggggggagagggaggga-------------gag-aggcaggaacCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGAACCAAGGGGAAAAAGAAATTCGCCGTGGAGGCCCGGAAGGTGCGGGCAGCCGGAGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGGTAAGGCACGGAGAAAGGGGATCTGAAACG-CAAGAGTCtgtgcc-------ttttttgtttgtt--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46841521 665 +  50890351 aggagttcagtctcc-cagcacctccgcct---tcagatccaggagtcctaaatcccgcccacctcctccttcggacccagcagtcc--aggagcctag--gcctcctccctcagactcagTACATT-------------GCCTGCTC--------------------CCACCCCCAAGCCTTT-----------------------CCTCTCTTGGACGCAGGTG----GT---GGCCC----------------CCAGATCACACGCATTCAAACCCAGACCCAGAAGTCTGGCCCACCTCACCTTGAGATCAGCAGAAGGGGCGCAGCAAACGCCTGGGTCCCCAGGAAGAAGAGGAAGTTCTGGGTGGTCTCAGGGAGGCTGGAAATAGACTCGGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACACGGCTTAGAAGGCGGGATCCTG-AAGTCAAGACAGGCTGGGCTCACGTAGAGCCAGGAGTC--AACACTGAATGGGGGGAGAGGGAGGGA-------------GAG-AGGCGGGAACCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGGGGAACGCTGGAGATGGCCAGACCCAGGAGAAGAACCAAGGGGAAAAAGAAATTCGCCGTGGAGGCCCGGAAGGTGCGGGCAGCCGGAGAGCAGGTGGAGAAGAGGGTAAGCTGGTGGGGGTAAGGCACGGAGAAAGGGGATCTGAAACA-CAAGAGTCTGTGCC-------tttcttttttttt--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45414489 611 +  49145316 AGGACTTCAGTCTCC-CAGC-------------------CCAGGAGTCCTAAGTCCCACCCTCCTCCTCCTCC-----------TCCTTTGGACCCTAG--GCCTCCTCCCAC------------------------------------------------------------CCCGAGCCTCT-----------------------CCTCTCTCCGACGCAGGTG----GT---GGCCC----------------CCAGATCACGTGCATTCAAACCCAGACCCAGAAGTCTGGGCAAACTCACCTGGAAATCAGCAGAAGGGGTACAGCAAAAGCCTGAGTCCCCAGGAAGAAGAGGAAGTTCTGGGCGGTCTCAGGGAGGCTGGAAATAGACTCAGGGATCTGGGCCCAGATGGACGACTGCCCCCGGAATGGACCACATAGCTTAGAAGGTGGGATCCTG-AAGTCAAGATAGGCTGGGCTCACGTAGAGCCAGGAGTCTGAACGCTGAACGCAGGGAGAGGGAGGGA-------------AAG-AGGCAGGAGCCTCTCGCACTTACAGGAAGATGCTGTAAAGCAGAGGAACGCTGGAGATGGCCAGACCCAGGAGGAGGACCAGGGGGAAAAAGAAATTCGCTGTGGAGGCCCGGAACGTGCGGGCGGCCGGAGAGCAGGTGAAGAAGAGGGTGAGCTGGCAGGGG-AAGGCACAGAGGAAGGGGATCTGAAA---CAACGGTCTGTGCC-------TCCTGCtttttt---
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3666540 708 + 145441459 AGAGGTTCAGGCTCCATACCTCCTCCCCCTTCATCAAATCGATAAATCCACACCCTAGCCCTCCT--TTCCTCAGA-CCAGGAATCC--A--AACCCAG--ATGTCTTTTCTTAGACCCTAAGCATTCACACTCCGACTCTCCTGCTCTTGATTTATAGGCATCCCGGCCAGCCCCACGTCTCTGTTGTATATAGGCACCCAGCCCACCTCTCTAGCACTCAGGTGCCCAGA---AACTCCTTTCTCTTTCAAACACTAAATTACACACATTCAAAGTCTGACT---------------GCTCACCTAGAGAGGATCAGAAGAGGTACAGTAAAAGCTTGGGTTCCCAGAAAGTAGAGAAAATTCTGGGCAGTCTGAGGGAGGCTCTCAATGGCCTCAGGGATCTGGGCCCAAATGGACAGCTTCCCGCGGAACGGGCCACACAGTTTCGAAGGTGGGATCCTGTAGGGGGAGACACACTGGATTCA------GTCA--AGTC-----------------GAGCTAGAGTGA-------------GAACAAACAGAAGTCTCTCGTACTTACAGGAAGATACTGTAAAGCACGGGAACTGCAGAGATCGCCAGACCCACAAGGAGAACCAGGGGGAAAAAGAAGTTTGCCGTGGATGCTCGGAAGGTGCGGGAAGCCGGTGAGTAGATGGAGAAGAGGGTTATCTGGTAGGGA-GAGGCGAGGA-AATGGAGGTGTAAGACT-CAAGAGTCAATCCTTT-GCTTTTCCCTGTTTCTT--
i mm10.chr7                 I 288 I 1
s canFam3.chr1               19625222 638 - 122678785 ----------CCGCC-AGACCCCTCCTCCC---TCAGACCCGGGAGTCC-AGGCTCCTCCAACCT-------CAGACCCAAGAGTCC--AGGCCCCCAGCCCCCTCCCTCCTCAGACCCAGGA-----------------G-----TC--------------------CTGGCCCCCAACCCCT-----------------------CCTTTCTTAGAAACAGGCA----GTAGGGGCCC----------------CCAGGGAACA------CAAACTCAGACCCAGGATTCTGGGCTCCCTCACCTGGAGATTAAGAGAAGAGGCACAGCAAAAGCCTGGGTCCCCAGGAAAAAGAGAAAGTTCTGGACGGTCTGAGGGAGGTTGGAAATAGACTCAGGGATCTGGGCCCAGATAGACGACTGCCCTTGGAATGGACCACACAGCTTAGAAGGTGGGATCCTG-AAGAAGTCAGAGACAGTGTTCAAGGATGGCCAAGATTCAGAATCCTGGATGAGGGTGGAAGGAAGGAGGGAAGGAGAAGGGAG-AGGCAGGCCCCTGCCACACTTACAGGAAGATGCTGTAAAGCACGGGAACAGCGGAGATGGCCAGAGCCAGGAGAAGGACCAAGGGGAAAAAGAAGTTCGCTGTGGAAGCCCGAAAGGTGCGGGAGGCCGGGGAGCAGGTGGAGAAAAGGGTGAACTGGGGGGAG-AAGG-------------------AGACA-CAAGACCCTGAGCCCTGGCCTGTCCTTTTTCAT---
i canFam3.chr1              C 0 C 0

a score=-567.000000
s hg38.chr19_GL949751v2_alt    136182 9 +   1002683 tttttgaga
s panTro4.chr19              59070248 5 +  63644993 ttttt----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55946951 5 +  60714840 ttttt----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102712978 5 - 106955855 ttttt----
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45415100 9 +  49145316 tttttgaga
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3667249 9 + 145441459 TCTTGGAGC
i mm10.chr7                 I 1 I 29
s canFam3.chr1               19625860 9 - 122678785 CGTCCAAGA
i canFam3.chr1              C 0 I 29
e chlSab2.chr6               46842186 0 +  50890351 C
e papAnu2.chr19              47131054 0 +  51301725 C
e macFas5.chr19              55024819 0 +  59248254 C
e rheMac3.chr19              60000181 1177 +  64156825 M

a score=1093.000000
s hg38.chr19_GL949751v2_alt    136191 14 +   1002683 cagagtctcgctct
s calJac3.chr22              45415109 14 +  49145316 cggagtttcgctct
i calJac3.chr22             C 0 I 627
e mm10.chr7                   3667258 29 + 145441459 I
e canFam3.chr1               19625869 29 - 122678785 I
e ponAbe2.chr19              55946956  0 +  60714840 C
e nomLeu3.chr10             102712983  0 - 106955855 C
e chlSab2.chr6               46842186  0 +  50890351 C
e papAnu2.chr19              47131054  0 +  51301725 C
e macFas5.chr19              55024819  0 +  59248254 C
e rheMac3.chr19              60000181 1177 +  64156825 M
e panTro4.chr19              59070253  0 +  63644993 C

a score=-415.000000
s hg38.chr19_GL949751v2_alt    136205 11 +   1002683 gtcgcccaggc
s panTro4.chr19              59070253  2 +  63644993 ---------tt
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3667258 29 + 145441459 I
e canFam3.chr1               19625869 29 - 122678785 I
e ponAbe2.chr19              55946956  0 +  60714840 C
e calJac3.chr22              45415123 627 +  49145316 I
e nomLeu3.chr10             102712983  0 - 106955855 C
e chlSab2.chr6               46842186  0 +  50890351 C
e papAnu2.chr19              47131054  0 +  51301725 C
e macFas5.chr19              55024819  0 +  59248254 C
e rheMac3.chr19              60000181 1177 +  64156825 M

a score=178978.000000
s hg38.chr19_GL949751v2_alt    136216  94 +   1002683 ttttttttttgagac-agagtctcgctc-tgtcgcccaggctggagtgcagtggc---------tctcactgcagcctcc-cctcccgggttcaagctattctcgt
s panTro4.chr19              59070255  95 +  63644993 ttttttttttgagacaagagtctagctc-tgtcgcccaggctggagtgcagtggc---------tctcactgcagcctcc-cctcccgggttcaagctattttcgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55946956  86 +  60714840 --------ttgagac-agagtctcgctc-tgtcgcccaggctggggtgcaatggc---------gctcactgcagcctcc-cctcccgggttcaagctattctcgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102712983  86 - 106955855 --------ctgagac-agagtctcgctc-tgtcgcccagactggagtgcggtggc---------gctcactgcagcctcc-cctctcgggttcaagctattctcgt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55024819  87 +  59248254 -----tttttgagac---agtctcgctc-tgtggcccaggcgagagtgcagtggc---------gctcactgcagcctcc-cctcctgggttcaagctattctcgt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47131054  87 +  51301725 -----tgtttgagac---agtctggctc-tgtcgcccaggcgggagtgcagtggc---------gctcactgcagcctcc-cctcccgggttcaagctattcttgt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46842186  92 +  50890351 ttttttttttgagac---agtctcgctt-tgtcgcccaggcgggagtgcagtggc---------gctcactgcagcctcc-cctcccgggttcaagctattctcgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45415750 103 +  49145316 ttttttttttaaggc---agttttgctcttgttgcccaggctggaatgtaatgccgtgatctcagctcactgcaacctccgcctcccgggttcaagctattctcct
i calJac3.chr22             I 627 C 0
e mm10.chr7                   3667258  29 + 145441459 I
e canFam3.chr1               19625869  29 - 122678785 I
e rheMac3.chr19              60000181 1177 +  64156825 M

a score=1132733.000000
s hg38.chr19_GL949751v2_alt    136310 402 +   1002683 gtctcagcctcccgagtagctgggattacaggtgtgcaccaccactcccggctaatttGTTTTGCTGttgttgttgtttgtttgttttctctttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcacgatcttggctcacttcgaccttcacctccctggttcaagcaattcccctgcctcagcctcctgagtagctgggattacaggcgcctgccactaagcccggctaa---ttttttttgtatttttagtagagacggggttttgccatgttagccaggctggtctcaaactcctgacctcaggtgatccacccgccttagtctcccgaagtgctgggattacaggcgtgagcc-actgcacccggccTACCTGCCTCTCCTTTTTTCC
s panTro4.chr19              59070350 403 +  63644993 gtctcagcctcccgagtagctgggattacaggtgtgcaccaccactcccggctaatttGTTTTGCTGttgttgttgtttgtttgttttctctttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcacgatcttggctcacttcgaccttcacctccctggttcaagcaattcccctgcctcagcctcctgagtagctgggattacaggcgcctgccactaagcccggctaa--tttttttttgtatttttagtagagacggggttttgccatgttagccaggctggtctcaaactcctgacctcaggtgatccacccgccttagtctcccgaagtgctgggattacaggcgtgagcc-actgcacccggccTACCTGCCTCTCCTTTTTTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55947042 402 +  60714840 gtctcagcctcccgagtagctgggattacaggtgtgcaccaccactcctggctaatttGTTTTGCTGttgttgttatttgtttgttttctctttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcgaccttcacctccctggttcaagcaattcccctgcctcagcctcctgagtagctgggattacaggcgcccgccaccaagcccggctaa---ttttttttgtatttttagtagagacggggttttgccatgttagccaggctggtctcaaactcctgacctcaggcgatccacccgccttagtctcccaaagtgctgggattacaggcgtgagcc-accgcacccggccTACCTGCCTCTCCTTTTTTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102713069 401 - 106955855 gtctcagcctccc-agtagctggggttacaggtgggcaccaccactcccggctaatttGTTTTGCTGttgttgttgtttgtttgttttctctttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcgaccttcacctccctggttcaagcaattcccctgcctcagcctctcgagtagctgggattacaggcgcccgccaccaagcccggctaa---tttgttttgtatttttagtagagacggggttttgccatgttggccgggctggtctcaaactcctgacctcaggtaatccacccgcgtcagtctcccgaagtgctgagattacaggcgtgagcc-accgcgcccggccTACCTGCCTCTCCTTTTTAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60001375 393 +  64156825 gtctcagcctcccaagtagctgggattacaggtgtgcaccaccactcccggctaatttGTTTCGC---TG-------ttgtttgttttctgtttttgagacggagcctcgctctgtcgcccaggccggagtgtagtggcgcgatctaggctcactgcgaccttcacctccctggttcaagcaattcccctgcctcagcctcccaagtagctgggattacaggcgctcgccaccaagcccggctaa--attttttttgtatttttagtagagacggggttttgccatgttagccaggctggtctcaaactcctgacctcaggtgatcaacccgcctgagtctcccaaagtactgggattacaggcgtgagcc-gccgcgcccggccTACCCGCCTCTCCTTTTTCCC
i rheMac3.chr19             M 1177 C 0
s macFas5.chr19              55024906 379 +  59248254 gtctcagcctcccaagtagctgggattacaggtgtgcaccaccactcccggctaatttgtttcg------------------------ctgtttttgagacggagcctcgctctgtcgcccaggccggagtgtagtggcgcgatctaggctcactgcgaccttcacctccctggttcaagcaattcccctgcctcagcctcccaagtagctgggattacaggcgctcgccaccaagcccggctaa--attttttttgtatttttagtagagacggggttttgccatgttagtcaggctggtctcaaactcctgacctcaggtgatcaacccgcctgagtctcccaaagtactgggattacaggcgtgagcc-gccgcgcccggccTACCCGCCTCTCCTTTTTCCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47131141 396 +  51301725 gtctcagcctcccaagtagctgggattacaggtgtgcaccaccactcccggctaatttgtttcgctgttg-------ttgtttgttttctgtttttgagacggagcctcgctctgtcgcccaggccagagtgcagtggcgcgatctaggctcactgcgaccttcacctccctggttcaagcaattcccctgcctcagcttcccaagtagctgggattacaggcgctcgccaccaagcccggctaa--attttttttgtatttttagtagagacggggttttgccatgttagccaggctgatctcaaactcctgacctcaggtggtcaacccgcctcagtctcccaaagtactgggattacaggcgtgagcc-accgcgcccggcctacccgCCTCTCCTTTTTCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46842278 393 +  50890351 gtctcagcctcccgagtagctgggattgcaggtgtgcaccaccactcccggctaatttGTTTCAC---TG-------ttgtttgttttctgtttttgagacggagcctcgctctgtcgcccaggccggagtgcagtggcgcgatctaggctcactgcgaccttcacctccctggttcaagcaattcccctgcctcagcctcccaagtagctgggattacaggcgctcgccaccaagcccggctaa--attttttttgtatttttagtagagacggggttttgccatgttagccaggctggtctcaaactcctgacctcaggtgatcaacccgcctcagtctcccaaagtactgggattacaggcgtgagcc-accgcacccggccTACCCGCCTCTCCTTTTTCCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45415853 382 +  49145316 gcctcagcctcccaagtggctgggactgcaaacatgcaccacctcacctggctaattt----------tg------------tgtttt-tgtttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggtatgatctcgggtcaccgcaacctccaccttccagtttcaagcagtt-ccctgcctcagcctccagagtagctgggattacaggcacaggccactacacctggtttttgtttgtttttttagttttagcagggacagggtttcaccattttggccagactggtcttgaactcctgacctcaggtgatgcacccgcctcagcctcccaaagtgcagggattgcaggcatgagttaacctcgcccggccTACCTGCCTCTCCTTTTTCCC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3667258  29 + 145441459 I
e canFam3.chr1               19625869  29 - 122678785 I

a score=289308.000000
s hg38.chr19_GL949751v2_alt    136712 94 +   1002683 GAACCAGGAGTCTGAGCCCCTTCCTCATCTAGGACCCCGGAGTCTGAGTCCCCAGATCCTC-AGACATATAAGTCAGAATGCCCTAGACCCCTC---C
s panTro4.chr19              59070753 90 +  63644993 GAACCAGGAGTCTGAGCCCCTTCCTCATCTAGGACCCCGGAGTCTGAGTCCCCAGATCCTC-AGACATATAAGTCAGAATGCCCTAGACTc-------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55947444 94 +  60714840 GAACCAGGAGTCTGAGCCCCTTGCTCATCTAGGACCCCGGAGTCTGAGTCCCCAGATCCTC-AGACATATAAGTCAGAATGccctagacccctc---c
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102713470 97 - 106955855 AAACCAGGAGTCTGAGCCCCTTCCTCATCTAGGACCCCGGAGTCTGAGTCCCCAGATcctc-agacatgtaagtcagaatgccctagacccctccttc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60001768 97 +  64156825 GAACCAGGAGTCTGAGCCCCTTCCTCATCTAGGACCccagagtctaagtccccggatcctc-agacatagaagtcagaatgccctagactccttcttc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55025285 97 +  59248254 GAACCAGGAGTCTGAGCCCCTTCCTCATCTAGGACCCCAGAGTCTAAGTCCCCGGATCCTC-AGACATAGAAGTCAGAATGCCCTAGACTccttcttc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47131537 97 +  51301725 GAACCAGGAGTCTGAGCCCCTTCCTTATCTAGGACCCCAGAGTCTAAGTCCCCGGATCCTC-AGACATAGAAGTCAGAATGCCCTAGACTCCTCCTTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46842671 97 +  50890351 GAACCAGGAGTCTGAGCCCCTTCCTCATCTAGGACCCCGGAGTCTAAGTCCCCGGATCCTC-AGACATAGAAGTCAGAATGccctagactcctccttc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45416235 97 +  49145316 AAACCAGGAGTCTGAGCCCTTTCCTCATCTAGGACCCCAAATTCGGAATTCCCGGATCCTC-AGACATATAAGTCAGAATGCCTCAGACCCTTCTTTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19625898 90 - 122678785 GAAACAGAATCCCTGGTTCTTTGCTGCCGTCAGATCTGGGAGGCCGGATCCCCTCTTCCCCTGGACGGAAAAG-----ACGCCCTAATCCCCTCC---
i canFam3.chr1              I 29 C 0
e mm10.chr7                   3667258 29 + 145441459 I

a score=1600437.000000
s hg38.chr19_GL949751v2_alt    136806 405 +   1002683 TCTCAGATGCAGTAG---TCTGTcctccaaccccctcctc----tctcaggaccgagtaatccaggcccccagga---tcttccttgcccttgacccaggagtgcgggccccaatacctcctgcctcagacccaagggt-cccccctaccccttaccttcttcagGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGTAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTCCCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAGGAC------GGGGCGGGGCCGGGCCGGAGTCAGGGGAGTGGCGGCCTGGAGTTTCCCCGCCTCCACCGCCCCGCCC
s panTro4.chr19              59070843 404 +  63644993 -ctcagatccagtag---tctgtcctccaaccccctcctc----tctcaggaccgagtaatccaggcccccagga---tcttccttgcccttgacccaggagtgcgggccccaatacctcctgcctcagacccaagggt-cccccctaccccttaccttcttcagGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGTAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAATTCCTGGGTCCCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAGGAC------GGGGCGGGGCCGGGCCGGAGTCAGGGCAGCGGCGGCCTGGAGTTTCCCCGCCTCCACCGCCCCGCCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55947538 405 +  60714840 tctcagatccagtag---tctgtcctccaaccccctcctc----tctcaggaccgagtaatcgaggcccccagga---tcttccttgcccttgacccaggagtgcgggccccagtacctcctgcctcagacccaagggt-cccccctgctccttaccttcttcagGTAGAAAAGCAGCACGAACTTGACCGTGTTAAGCAGGGGCAGTAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTCCCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAGGAC------GGGGCAGGGCCGGGCCCGAGTCAGGGGAGCAGCGCCCTGGAGTTTCCCCGCCTCCACCGCCCCGCCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102713567 395 - 106955855 tctcagatccaggag---tctgtcctccaaccccctcctc----tctcaggacctagtaatccagcccccctgga---tattccttacccaggacccaggagtgcgggccccaatacctcccgcctcagacccaagGGT--CCCCCTACCCCTTACCTTCTTCAGGTAAAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGTAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTTCCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAggac------ggggcggggccgggcccgagtcaggggagcggcggcctggAGTTT---------CACCGCCCCGCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60001865 412 +  64156825 tctcagatccaggag---tctgtcctccaaccccctcctc----tcttaagacctagtaatccaggaccccgtga---tcttccttgcccaggacccaggagtgcgggccccaatacctcctgcctcagacccaagagtccccccctaccccttaccttcttcagGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGCAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTCCCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAGGAcggggcgggggcggggccgggcccgAGTCAGGGGCGCGGCTATTTGGAGTTTCCCCGCCTCCACCGCCCTGCCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55025382 412 +  59248254 tctcagatccaggag---tctgtcctccaaccccctcctc----tcttaagacctagtaatccaggaccccgtga---tcttccttgcccaggacccaggagtgcgggccccaatacctcctgcctcagacccaagagtccccccctaccccttaccttcttcagGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGCAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTCCCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAggacggggcgggggcggggccgggcccgagtcaggggcgcggCTACTTGGAGTTTCCCCGCCTCCACCGCCCTGCCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47131634 410 +  51301725 TCTCAGATCCAGGAG---TCTGTCCTCCAACCCCCTCCTC----TCTTAGGACCTAGCAATCCAGGACCCCGTGA---TCTTCCTTGCCCAGGACCCAGGAGTGCGGGCCCCAAtacctcctgcctcagacccaaGAGTcccccccTACCCCTTACCTTCTTCAGGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGCAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGgcacctggaactcctgggtccCCGCCAGACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAGgacggggcgggggcggggccgggcccgAGTCAGGGGCGCGGCTACTTG--GTTTCCCCGCCTCCACCGCCCTGCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46842768 411 +  50890351 tctcagatccaggag---tctgtcctccaa-cccctcctc----tcttaggacctagtaatccaggcctccagga---tcttccttgcccaggacccaggagtgcgggccccaatacctcctgcctcagacccaagagtcccctcctaccccttaccttcttcagGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGGGGCAGCAAAGGGCAGAAAAAACTCCCCACCCAGACCACCGTCTGCGCGTAGATGAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTCCCCGCCACACGACCCAGCGCCCCAGGACAGAGGCCACAGAGGAGCCTGAAggacggggcgggggcggggccgggcccgagtcaggggcgcggCTACTTGGAGTTTCCCCGCCTCCACCGCCCTGCCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45416332 407 +  49145316 TCTCACATCGAGGAG---TCTGTCCTAcagccccct--tc----tcttacgacctagcagtccaggcccccaaaa---tcttccttgcccgggacccaggagtccaggccccaatacctcctgcctcagacccaagggt-cccccccatcccttaccttcttcagGTAGAAAAGCAGCAGGAACTTGACCGTGTTAAGCAGAGGCAGTAAAGGGCAGAAAAAACTCCCCACCCAGACCACAGTCTGCGCGTAGATAAGCCCCAGCACCTCGTCGGGCACCTGGAACTCCTGGGTCCCCGCCAGACGACCAAGCGCCCCAGGACAGAGACCGCAGAGGAGCCTGAAGGATGGGGC-GGGGCGGGG-CGAGCCTAAGTCAGAGACGCCGTGGCCTGGAGCTCCCCCGCCTTTACCGCCCCACCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3667287 401 + 145441459 TCTCTGAGCCAATAGGACTCTGACTTCCAGCTCCCTCCTCCCATCCTCAGGGCATAGTAATCAGGGCCCTGATAACCGTCCTCCTTTCTCTAG-CCCAGGACTACAGCCTCCAACACCTGTCAGCTCAGACCCTAGGCT--ACTCCTCAGACTCACCTTCTTCAGGCAGAACAGTATGAGGAACTTAGCAGTGTTGATCAAAGGCAGTAAAGGGCAGAAGAAGCTTCCCACCCAGACCACGGTCTGCGCATAGATGAGCCCCAGCACCTCATCTGGCACCTGGAACTCCAGGGTTCCCGACAGACGACCCAGTGCCCCAGGACAGAGGCCACAGAGTATCCTGAAGGGC------AGAGTGGGAC--------AGTCATAG--GCTGCCTTTTG--GCTTTCCTAACTCTACCACCCAGCCC
i mm10.chr7                 I 29 I 1787
s canFam3.chr1               19625988 361 - 122678785 TCCCACATCCAGGAG---TCTGTCCTCCAG-ACCCTTCTC----TCTCAGGAGCTAGTAGCTGGGGACCCTCGCA---TCCTCCTTCCTCAGGACCCAGGAAT-------------------------------------CCACCACACTCCTCACCTTCTTGAAATAGAAAAGTAACAGGAACTTGGCCGTGTTGAGCAGAGGTAGTAGAGGGCAGAAAAAACTCCCTACCCAGACCACCGTCTGTGCGTAGATGAGCCCGAGCACCTCGTCGGGTACCTGGAACTCCTGGGTTCCTACCACGCGACCCAGGACCCCGGGACAGAGGCCACAGAGCAGCCTGAGGGGC------GGGGCGGGGCCAAGTCAGAGGCAAGCCCGCC-CGCCTTG------CCCCGCCCCTGCCGTCCTGCCC
i canFam3.chr1              C 0 C 0

a score=525804.000000
s hg38.chr19_GL949751v2_alt    137211 214 +   1002683 GCCAATAGGAAGCATGCGTATTGGTTGGGGGGGGGGGGGCGGGACTTTCAGGACTCCAC------GTGGAGGGGGTGTGTCCAGAGGGCGGGTCCTGAGGACTAGAAGGGAC----CCAGATGTCGCCGCCGT-----CGGGGCCAGAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGCGGG-GAGATCTGCGGACCTAGGGCAAGCAAAGGGAGCAGGCAGAGGCGG
s panTro4.chr19              59071247 213 +  63644993 GCCAATAGGAAGCACGCGTACTGG-GGGGGGGGGGGGGGCGGGACTTTCAGGACTCCAC------GTGGAGGGGGTGTGTCCAGAGGGCGGGTCCTGAGGACTAGAAGGGAC----CCAGATGTCGCCGCGGT-----CGGGGCCAGAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGCGGG-GAGATCTGCGGACCCAGGGCAAGCAAAGGGAGCAGGCAGAGGCGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55947943 207 +  60714840 GCCAATAGGAAGCATGCGTATCTG-------AGGGGAGGCGGGACTTCCAAGACTCCAC------GTGGAGGGGGTGTGTCCAGAGGGCGGGTCCTGAGGACTAGAAGGGAC----CCAGGTGTCGCCGCCGT-----CGGGGCCAGAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGCGGG-GAGATCTGCGGACCTAGCGCAAGCAAAGGGAGCAGGCAGAGGCGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102713962 212 - 106955855 GCCAATAGGAAGCATGCGTATCTG-------AGGAGGGGCGGGACTTTCAAGACTCCAC------GTGGAGGGGGTGTGTCCAGAGGGCGGGTCCTGAGGCCTAGACCGGAC----CCAGGTGTCGCCGCGGTAGGGGCGGGGCCCGAGGGAAGTAACCCACTAAAACAAAGGCGGGGAGTGGG-GAGATCAGCGGACCTAGGGCAAGCAAAGGGAGCAGGCAGAGGCGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60002277 200 +  64156825 GCCAATAGGAAGCAAGCGTATCTG-------AGGAGGGGCGGGACTTTCAAGACTCCAC------GTGGAGGGGGTGTGTCCA-------------GAGGACTAGACGGAGC----CCAGGTGTCGCGGCGGTAGGGGCGGGGCCCCAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGGGGGGGAGATCTGCGGACCTAGGGCAAGCAAAGGGAGCCGGCAGAGGCGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55025794 200 +  59248254 GCCAATAGGAAGCAAGCGTATCTG-------AGGAGGGGCGGGACTTTCAAGACTCCAC------GTGGAGGGGGTGTGTCCA-------------GAGAACTAGACGGAGC----CCAGGTGTCGCGGCGGTAGGGGCGGGGCCACAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGTGGGGGAGATCTGCGGACCTAGGGCAAGCAAAGGGAGCCGGCAGAGGCGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47132044 199 +  51301725 GCCAATAGGAAGCAAGCGTATCTg--------gggggggCGGGACTTTCAAGACTCCAC------GTGGAGGGGGTGTGTCCA-------------GAGGACTAGACAGGAC----CCAGGTGTCGCGGCGGTAGGGGCGGGGCCACAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGTGGGGAAGATCTGCGGACCTAGGGCAAGCAAAGGGAGCCGGCAGAGGCGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46843179 199 +  50890351 GCCAATAGGAAGCAAGCGTATCTG-------AGGAGGGGCGGGACTTTCAAT-CTCCAC------GTGGAGAGGGTGTGTCCA-------------GAGGACTAGACGGGAC----CCAGGTGTCGCGGCGGTAGGGGCGGGGCCACAGGGAAGTAACCCACTAAAACAAGGGCGGGGAGTGGGTGAGAACTGCGGACCTAGGGCAAGCAAAGGGAGCCGGCAGAGGCGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45416739 217 +  49145316 ACCAACAGGAAGCACGCGTAACTG-------ACGTGGGCCGGGACTTTCAAGACTCCACGTGGAGGTGGAGGAGGTGGGTCCAGAGGGCGGGTCCTGAGGACTAGACTAGACAGGACCCGGCGT-GCGGCGGTAGGGGCGGGGCCAGAGGGAAGG----CACTAAAACCAGGATGGGAAGCGAG-GCGACCTGCGGACCCAGGGCAAGCAAAGGGAGCCAGCAGAGGCGG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19626349 104 - 122678785 GCCAATCAGAAGTGAATATATTTG-------AATAGGGGTGGAGTTTTCAGT------C------CTGGAGGGGGTGTGTCTA---------------------------------------------------------------GAGGGAAGTAACT-----------AGGTGAGAGGGGGC-GGGGCCTGCAGAC--------------------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3667688 1787 + 145441459 I

a score=1106245.000000
s hg38.chr19_GL949751v2_alt    137425 308 +   1002683 GAATGGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGAT-G-GGGCACGGCCT-C-GTCCTAGA-GGGGCGGGGCCA-CAGCAAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGACAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATATATCAGAAAGAACTCGGGACCCGGGCACCTGGAGG-CCCACGCGTCCGAGTCTCCACATCGCAAGC---CTATGAGACCCTGTCAATACTTTCTCT-GGGGG------T
s panTro4.chr19              59071460 309 +  63644993 GAATGGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGAT-G-GGGCAGGGCCT-TGGTCCTAGA-GGGGCGGGGCCA-CAGCAAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGACAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATATGTCAGAACGACCTCAGGACCCGGGCACCTGGAGG-CCCACGCGTCCGAGTCTCCACATCGCAAGC---CTATGAGACCCTGTCAATACTTTCTCT-GGGGA------T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55948150 308 +  60714840 GAATAGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGAT-G-GGGCAGGGCCT-G-GTCCTAGA-GGGGCGGGGCCA-CAGCAAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGACAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATATGTCAGAAAGACCTCAGGACCCGGGCACCTGGAGG-CCCACGCGTCCGAGTCTCCACATCACAAGC---CTATGAGACCCTGTCAATACTTTCTCT-GGGGG------T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102714174 306 - 106955855 GAATAGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGAT-G-GGGCAGGGCCT-G-GTCCTAGA-GGGGCGGGGCCA-CAGCGAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGACAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATAGGTCAGAAAGACCTCAGGACCCGGGCACCTGGAGG-CCCAGGCGTCCGAGTCTCCACATCTCAAGC---CTATGAGACC--GTCAGTACTTTCTCT-GGGGG------T
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60002477 309 +  64156825 GAACAGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGAT-G-GGGCAGGGCCT-G-GTCCTAGGGGGGGTGGGGCCA-CAGCGAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGGCAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATAGGTCAGAAAAACCTCAGGACCCGAGCACCTGGAGG-CCCACGCGTCCGAGTCTCCACATCGCAAGC---CTATGAGACCCTGTCAATACTTTCTCT-GGGGG------T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55025994 309 +  59248254 GAACAGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGAT-G-GGGCAGGGCCT-G-GTCCTAGGGGGGGTGGGGCCA-CAGCGAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGGCAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATAGGTCAGAAAGACCTCAGGACCCGAGCACCTGGAGG-CCCACGCGTCCGAGTCTCCACATCGCAAGC---CTATGAGACCCTGTCAATACTTTCTCT-GGGGG------T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47132243 291 +  51301725 GAACAGTAAAAAGGT------GCGCGGTGAAAAGAACAGCGCGat-g-gggcagggcctgg-gtccTAGG--------------------GGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGGCAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCactgaagaaggaagaaataggTCAGAAAGACCTCAGGACCCGAGCACCTGGAGG-CCCACGCGTCCGAGTCTCCACATCGCAAGC---CTATGAGACCCTGTCAATACTTTCTCT-GGGGG------T
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46843378 309 +  50890351 GAACAGTAAAAAGGT------GCACGGTGAAAAGAACAGCGCGAT-G-GGGCAGGGCCT-G-GTCCTAGT-GGGGCGGGGCCA-CAGCGAGGGGCGGGGCTCTCACTTTCTAGGAAACTGGATGAGCAGCGCGACTGCCAAGGCAGTCAGCAGATCAAAGAGCAGAAGTTTGTACATTTCCTGGCCCAGGACAGTCTCCCAGCACTGAAGAAGGAAGAAATAGGTCAGAAAGACCTCAGGACCCGAGCACCTGGAGG-CCCACGCGTCCAAGTCTCCACATCGCAAGC---CTATGAGACCCTGTCAATACTTTCTCTGGGGGG------T
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45416956 293 +  49145316 GAATAGCAAAAAGGTGAAATAGCACGGTGAGAAGGACAGCACGAT-GTGGGCAGGGCCT-G-GTCCTGAA--------------------GGGGCGGGGCTCTCACTTTCGAGGAAACTGGATGAGCAGCGAGACTGCCAAGCCAGTCAGCAGATCAAAGAGTAGGAGCTTGTACATTTCCTGGCCCACGAGAGTCTCCCAGCACTGAAGAC-----AAATAGGTCAGAAAGACCTCAGGACCCGGGCACCTGGAGGCCCCACGCGTCGGAGTCTCCACATCCCAAAC---CTGTGAGACCCTATCAATACTTTCTCT-GGGGG------T
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3669475 313 + 145441459 GAATAGAAGATAGGTGGA---GCACAAT-ATAGGAACAATCCCATCG-GGATGGGGCCT-G-CTCTAATA-GGGGCAGGGCTACCAGGAAGGGCAAGGACACTTACTTCCTAGGAAACTGGACCAACAGCGTGACCAACAGGCCCATCAGCAGATCAAAGAGTACAAGTTTGTACATCTCCTGGCCCAGCCGAGTCTCCCAGCACTGAAGAAGTAAGAAATTGGT-----AGATC---AGACTCTCCTGCCTGGAGA-CCCAAGCATCTGAGGCTCCGAATTGTCAGCAAACATCAGAACCCCACTCGTGAATTGTGT-GGGTGGGCGCTT
i mm10.chr7                 I 1787 C 0
s canFam3.chr1               19626453 245 - 122678785 -----------------------------AAAAGGTCAAAGAAAT-G-GGGTAGGGGTG-G----------GGG---------------------------CTCACTTCCGAGGAAACTGGATGAGCAGCATGACAGCCACGCCAGTCAGCAGATCAAAGAGCAGGAGTTTGTACATCTCCTGCCCCAGCCGGGTCTCCCAGCACTGAGGAAGGAAGGCATGGGTCAGAAAGACCTCCAGATCCAGGCACCTGGAGG-TCCAAGCATCCAAGTCTCCAAATCACAAGT---------GATCCTAACAAACCTTTTTTT-GGGGG------G
i canFam3.chr1              C 0 I 12

a score=79960.000000
s hg38.chr19_GL949751v2_alt    137733 27 +   1002683 CCTCGTTTTTCAAACTTTCATACCCTT
s panTro4.chr19              59071769 27 +  63644993 CCTCGTTTTTCAAACATTCATACCCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55948458 27 +  60714840 CCTCGTTTTTCAAACATTCATACTCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102714480 27 - 106955855 CCTCGTTTTTCAAACATTCATACCCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60002786 27 +  64156825 CCTCGTTTTTCAAACATTCATACCCAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55026303 27 +  59248254 CCTCGTTTTTCAAACATTCATACCCAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47132534 27 +  51301725 CCTCGTTTTTCAAACATTCATACCCAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46843687 27 +  50890351 CCTCGTTTTTCAAACATTCATACCCAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45417249 27 +  49145316 CCTCGTTTTTCAAACATCATTATCCTT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3669788 23 + 145441459 CACTGTTTATC-AGTATTCATGCC---
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19626698 12 - 122678785 I

a score=1351824.000000
s hg38.chr19_GL949751v2_alt    137760 426 +   1002683 GGGAGAGTGTTCCAGCACCCCAAGCTCCCCTCTCCGCCCAAACCAAGAGTCTGGACCCACCCAGCT---------CCATCTTTCCTTCAGGGACCCAAGAGTCCCACGCACA--CCCATGCCGTTCTCACCGGAAGTTGTTTGTAATTGTAGCCACAGGTTTTGCAGTCCTCAGCCTCGGAGTCGCCCCCACAAGTGATCTGATTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCGAGGCGAAGAAACACGGTCCTGAAGGGGGGAAGGCA---GAGAATGGGCCCTGACCCGGTACCCACCATGTGGCAGTTCCCTTCTCA---------GTGGAACGCGCCCGC-ATTCAAC-------CCATCTCACA---GATGAAGCTGAGGCCC----AGTGACAGAATCAGGA----------------TTTCTTTCTttctttctttctt---tttttttt---tttttttttgagacagggtct
s panTro4.chr19              59071796 433 +  63644993 GGGAGAGTGTTCCAGCACCCCAAGCTCCCCTCTCCGCCCAAACCAAGAGTCTGGACCCACCCAGCT---------CCATCTCTCCTTCAGGGACCCAAGAGTCCCAGGCACA--CTCATGCCGTTCTCACCGGAAGTTGTTTGTAATTGTAGCCACAGGTTTTGCAGTCCTCAGCCTCGGAGTCGCCCCCACAAGTGATCTGATTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCGAGGCGAAGAAACACGGTCCTGAAGTGGAGGAGGCAGAGGAGAATGGGCCCTGACCAGGTACCCACCATGTGGCAGTTCCCTTCTCA---------GTAGAACGCGCCCGC-Attcaac-------ccttctcaga--tgaagaagctgaggccc----agtgaCAGAATCAGGA----------------TTTCtttcttttcttttttcttttcttttcttt---tttttttttaagacagggtct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55948485 409 +  60714840 GGGAGAGTGTTCCAGCA-CCCAAGCTCCCCTCTCCGCCCAAACCAAGAGTCTGGACCCACCCAGCT---------CCATCTTTCCTTCAGGGACCCAAGAGTCCCAGGCAGAT-CCCGTGCCGTTCTCACCGGAAGTTCTTTGTAATTGTAGCCACAGGTTTTGCAGTTCTCAGCCTCGGAGTCGCCCCCACAAGTGATCTGATTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCCAGGCGGAGAAACACGGTCCTGAAGGGAAG---------GAGAATGGGCCCTGACCCGGTACCCACCATGTGGcagttcccttctcc---------gtggaacgcgcccgc-attcaac-------ccatctcacagatgaagaagctgaggccc----agtgacag--tcaggA----------------tttctttctttctttctttctt------------------tttttgagacagggtct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102714507 417 - 106955855 GGGAGAGTGTTCCAGCA----------CCCTCTCCGCCCAAACCAAGAGTCTGGACCCACCCAGCT---------CCATCTTTCCTTCAGGGACCCAAGAGTCCTAGGCAGAT-CGCATGCCGTTCTCACCGGAAGTTCTTTGTAATTGTAGCCACAGGTTTTGCAGTCCTCAGCCTCGGAGTCGCCCCCACAAGTGATCTGATTCCAGAGAGAGAAGAGCAGCACCACCAGGGAGGCCAGGCGAAGAAACACGGTCCTGAAGGGGGGAAGGCAGAGGAGAATGGGCCCTGACCCGGTACCCACCATGTGGCAGTTCCCGTCTCA---------GTGGAACGCGCCCGC-ATTCAGc-------ccatctcacagatgaagaagctgaggccc----agtgaCAGAGTCAGGA----------------TTTCtttcttttttttcttttt---------tc---tttttttttgagacagggtct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60002813 420 +  64156825 GGGAGAGTGTTCCAGCATCCCGAGCTCCCCTCTCCGCCCAAACC--GAGTCTGGACCCACCTAGCT---------CCATCTTTCCTTCAGGGACCCAGGAGTCCCAGGCAGAT-CCCATGCCGTTCTCACCGGAAGTTCTTTGTAATTGTAGCCACAGGTTTTGCAGTCCTTAGCCTCGGAGTCGCCCCCACAAGTGATCTGTTTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCCAGGCGAAGAAACACGGTCCTGGCGGGGGGAAGGCA---GAGAATGGGCCCTGATCCGGTACCCACCACGTGGCAGTCCCCTTCTCA---------GTGGAACGCGCTCAC-Attcaac-------ccatctcacagatgaagaagcagaggccc----agcgaCAGAGTCAG-----------------------ttcttttcttttctttt----cttttct---tttctttttgagacagggtct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55026330 433 +  59248254 GGGAGAGTGTTCCAGCATCCCGAGCTCCCCTCTCCGCCCAAACC--GAGTCTGGACCCACCTAGCT---------CCATCTTTCCTTCAGGGACCCAGGAGTCCCAGGCAGAT-CCCATGCCGTTCTCACCGGAAGTTCTCTGTAATTGTAGCCACAGGTTTTGCAGTCCTTAGCCTCGGAGTCGCCCCCACAAGTGATCTGTTTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCCAGGCGAAGAAACACGGTCCTGGCGGGGGGAAGGCA---GAGAATGGGCCCTGATCCGGTACCCACCACGTGGCAGTCCCCTTCTCA---------GTGGAACGCGCTCAC-ATTCAAC-------CCATCTCACAGATGAAGAAGCAGAGGCCC----AGCGACAGAGTCAGGA----------TCtttctttctttcttttcttttctttt----cttttct---tttctttttgagacagggtct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47132561 446 +  51301725 GGGAGAGTGTTCCAGCATCCCGAGCTCCCCTCTCCGCCCAAACC--GAGTCTGGACCCACCTAGCT---------CCATCTTTCCTTCAGGGACCCAGGAGTCCCAGGCAGAT-CCCATGCCGTTCTCACCGGAAGTTCTTTGTAATTGTAGCCACAGGTTTTGCAGTCCTTAGCCTCGGAGTCGCCCCCACAAGTGATCTGTTtccagagagagaagagcaggacCACCAGGGAGGCCAGGCGAAGAAACACGGTCCTGGCGGGGGGAAGGCA---GAGAATGGGCCCTGATCCGGTATCCACCACGTGGCAGTCCCCTTCTCA---------GTGGAACGCGCTTGC-ATTCAAC-------CCATCTCACAGATGAAGAAGCAGAGGCCC----AGCGACAGAgtcaggatttctttctttctctctttttctctctctctttctttt----tctttctttctttctttttgagacagggtct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46843714 436 +  50890351 GGGAGAGTGTTCCAGCATCCTGAGCTCCCCTCTCCGCCCAAACCAAGAGTCTGGACCCACCCAGCT---------CCATCTTTCCTTCAGGGACCCAGGAGTCCCAGGCAGAC-CCCATGCCGTTCTCACCGGAAGTTCTTTGTAATTGTAGCCACAAGTTTTACAGTCCTTAGCCTCGGAGTCGCCCCCACAAGTGATCTGTTTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCCAGGCGAAGAAACACGGTCCTGGCGGGGGGAAGGCA---GAGAATGGGCCCTGATCCGGTACCCACCACGTGGCAGTCCCCTTCTCC---------GTGGAACGCGCTCGC-ATTCAACATTCAAGCCCtctcacagatgaagaagctgaggccc----agcgaCAGAGTCAGGA----------------tttctttctttctttctttctt----tcttttt---tttttttttgagacagggtct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45417276 413 +  49145316 GGGAGAGTGTTCCAGCACCCCAAGCTCCCCCCTCCGCCCAAACCAAAAGTCTGGTCCCACGCAGCT---------CCTTCTTTCCTCTGGGGACCCTAGCGTCCCAGGCAGAC-CCCACGCCGTTCTCACCGGAAGTTCTTTGTAATTGTAGCCACAGGTTTTGCAGTCCTCAGCCTCGGCGTCGCCCCCACAAGTGATCTGATTCCAGAGAGAGAAGAGCAGGACCACCAGGGAGGCCAGGCGAAGAAACAGGGTCCTGGTGAGGGGAAGGCAGAGGAGAATGGGCCCTGACCC-GTCCCCACCACGTGGTGGTTCCCTTCTGA---------GTGGAACGCGCTCGG-ATTCAAC-------CCAGCTCACAGATGAAGAAGCTGAGGCT------GTGACACAATCAGGA--------------------------tttttctttttt----------c---tttttttttgagacagggtct
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3669811 345 + 145441459 ------ATGTTT----------AGCTTCTTTCC-------AACCAAGGAACAG--TCCACCCAGTTCAAGGATTCCTATCCTACCTCTAGG--CCCAAGAATGCCACCTGTGTGCCCACAGCATTCTCACCGGAATTTCTTTGTAATTATAGCCGCAGGCCTTGCATCCTTCTGCCTCCATGTTTCCCCCACACGTGATCTGACTCCACAGAGAGACCAGAAGGAACACCAGCGAGGCCAGACGCAAAAACACAGTCCTG-----------------CAAGATGAA---------GGGACTCACACTGAGGTAGTG-CCTCCTGG---------ATG---CACACTCGT-GATCTCC-------TCCTC-CAC--------------------------------------------------------TTTATATTTTTCCTACCCGCcc-------ccca---cttttcacagaggaaggaact
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19626710 380 - 122678785 GGGAGGGTGTCCTAGCACTTTAAGCTCCTTCTTCCTCTTAAACCTGGTGTCTGAACCCATCTAGTT---------CCTGCTTTCCTTCAAGGACCCAGGA-TTTGGGGC-----CCC------TTCTCACCGGTAGTTCCTTGTAATTGTAGCCACAGGTCTTACACTCTTCAGCCTCAGCCTTGCCCCCACAAGTGATCTGATTCCAGAGGGAGAAGAGCAGGACTAGCAGGGATGCCAGGCGGAGAAACACGGTCCTGGCAAGGGGAA-------CGGAATCAGCCCTGACC-AGTGTTCACCACATGCCAGCCCCCCTCCGCCCCCCACATGTGGAACACGCTCACAattcttc-------ccacttcacaaatgaagaaactgaggctctgaTGGAACAagagtcagga----------------ttt------------------------------------------------------
i canFam3.chr1              I 12 C 0

a score=7317.000000
s hg38.chr19_GL949751v2_alt    138186 6 +   1002683 cactct
s panTro4.chr19              59072229 6 +  63644993 cactct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55948894 6 +  60714840 cactct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102714924 6 - 106955855 cactct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60003233 5 +  64156825 cact-t
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55026763 5 +  59248254 cact-t
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133007 5 +  51301725 cact-t
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844150 5 +  50890351 cact-t
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45417689 6 +  49145316 caccct
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3670156 6 + 145441459 gagtct
i mm10.chr7                 C 0 I 588
e canFam3.chr1               19627090 0 - 122678785 C

a score=299754.000000
s hg38.chr19_GL949751v2_alt    138192 107 +   1002683 gtcacccggactggagtgcagtggcgcgatctcagctcactgcaacctccacctcccaggctcgagccattctcctgcct------------------------cagcctcccgagtagctgggactacag
s panTro4.chr19              59072235 107 +  63644993 gtcgcccggactggagtgcagtggtgcgatctcagctcactgcaacctccacctcccaggctcaagccattctcctgcct------------------------cagcctcccgagtagctgggactacag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55948900 107 +  60714840 gtcgcccagactggagtgcagtggcgcgatctcagcttactgcaacctctacctcccaggctcaagccattctcctgcct------------------------cagcctcccgagtagctgggactacgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102714930 107 - 106955855 gtcgcccggactggagtgcagtggcgcgatctcagctcactgcaacctctaccgcccaggctcaagccattctcctgcct------------------------cagcctgccgagtagctgggactacag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60003238 107 +  64156825 gtcgtacagactggagtgcagtggcgcgatctcagctcactgcaccctctacctcccaggctcaagcgattctcctgcct------------------------cagcctcccgagtagctgggactacag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55026768 107 +  59248254 gtcgtacagactggagtgcagtggcgcgatctcagctcactgcaccctctacctcccaggctcaagcgattctcctgcct------------------------cagcctcccgagtagctgggactacag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133012 107 +  51301725 gtcgtacagactggagtgcagtggtgtgatctcagctcactgcaccctctacctcccaggctcaagcgattctcctgcct------------------------cagcctcccgagtagctgggactacag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844155 104 +  50890351 ---gtacagactggagtgcagtggcgcgatctcagctcactgcaccctctacctcccaggcttaagcgattctcctgcct------------------------cagcctccccagtagctgggattacag
i chlSab2.chr6              C 0 I 58
s calJac3.chr22              45417695 121 +  49145316 atcgcccagactgtagtgcagtggcgtgatctcggctc-------tctccacctcccaggctcaagca---cttctgccttgagaagtaggaggctcctccaagtagcctcccaagtagctgggactactg
i calJac3.chr22             C 0 I 4
e mm10.chr7                   3670162 588 + 145441459 I
e canFam3.chr1               19627090   0 - 122678785 C

a score=22232.000000
s hg38.chr19_GL949751v2_alt    138299 9 +   1002683 aagccacta
s panTro4.chr19              59072342 9 +  63644993 aagccacta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949007 9 +  60714840 aagccacta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715037 9 - 106955855 aagccacta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60003345 9 +  64156825 aagccacta
i rheMac3.chr19             C 0 M 128
s macFas5.chr19              55026875 9 +  59248254 aagccacta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133119 9 +  51301725 aagccaCTA
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45417820 9 +  49145316 gggccacta
i calJac3.chr22             I 4 C 0
e mm10.chr7                   3670162 588 + 145441459 I
e canFam3.chr1               19627090 0 - 122678785 C
e chlSab2.chr6               46844259 58 +  50890351 I

a score=53959.000000
s hg38.chr19_GL949751v2_alt    138308 35 +   1002683 ccgccgggctaatattcgtatttttactacagacg
s panTro4.chr19              59072351 35 +  63644993 ccgccgggctaatattcgtatttttactacagacg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949016 35 +  60714840 ccgccgggctaatattcgtatttttactacagacg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715046 35 - 106955855 ccgccgggctaatattggtatttttactacagaag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55026884 35 +  59248254 tcgccgggctaacttttgtattttcactagagaca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133128 35 +  51301725 TCGCcgggctaacttttgtatttttactagagaca
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45417829 35 +  49145316 tcgccgggctaatttttgtatttttagtagagatg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3670162 588 + 145441459 I
e canFam3.chr1               19627090  0 - 122678785 C
e chlSab2.chr6               46844259 58 +  50890351 I
e rheMac3.chr19              60003354 128 +  64156825 M

a score=57765.000000
s hg38.chr19_GL949751v2_alt    138343 31 +   1002683 gggtttcatcatgtttgtcaggctggtctcg
s panTro4.chr19              59072386 31 +  63644993 gggtttcatcatgtttgtcaggctggtctcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949051 31 +  60714840 gggtttcgccatgtttgtcaggctggtctcg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715081 31 - 106955855 gggtttcaccatgttcgtcaggctggtctcg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55026919 31 +  59248254 gggtttcaccgtgtttgtcaggctggtgttg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133163 31 +  51301725 gggtttcaccgtgtttgtcaggctggtgttg
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45417864 31 +  49145316 ggctctcatctcgttggccaggctggtctcg
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3670750 31 + 145441459 ggaactcactttgtagaccaggctggcctcg
i mm10.chr7                 I 588 C 0
e canFam3.chr1               19627090  0 - 122678785 C
e chlSab2.chr6               46844259 58 +  50890351 I
e rheMac3.chr19              60003354 128 +  64156825 M

a score=26225.000000
s hg38.chr19_GL949751v2_alt    138374 12 +   1002683 aactcctga--cct
s panTro4.chr19              59072417 12 +  63644993 aactcctga--cct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949082 12 +  60714840 aactcctga--cct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715112 12 - 106955855 aactgctga--cct
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55026950 12 +  59248254 aactcctga--cct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133194 12 +  51301725 aactcctga--cct
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45417895 12 +  49145316 aactcctga--cct
i calJac3.chr22             C 0 I 12
s mm10.chr7                   3670781 14 + 145441459 aactcagaaatcct
i mm10.chr7                 C 0 I 1
s canFam3.chr1               19627090 12 - 122678785 gaatccaga--tct
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46844259 58 +  50890351 I
e rheMac3.chr19              60003354 128 +  64156825 M

a score=527561.000000
s hg38.chr19_GL949751v2_alt    138386 198 +   1002683 cagcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggccAACAGAGTCAGGATTTGAATCCCTGGATTCGGTATCAGCAGGATTTCCGTGTCTTACCTGTCAGCGCCAACATCCCTCTGACCGCCCCCACCCTTCAT---CATTCCCAGCCATCCC--CGTGAGGCTGGAACCTGAGCAGGATAAAA
s panTro4.chr19              59072429 198 +  63644993 cagcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggccAACAGAGTCAGGATTTGAATCCCTGGATTCGATATCAGCAGGATTTCCGTGTCTTACCTGTCAGCGCCAACATCCCTCTGACCGCCCCCACCCTTCAT---CATTCCCAGCCATCCC--CGTGAGGCTGGAACCTGAGCAGGATAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949094 198 +  60714840 cagcctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcctggccAACAAAGTCAGGATTTGAATCCCTGGATCCGATATCAGCAGGATTTCCGTGTCTTACCTGTCAGTGCCAACATCCCTCTGACCGCCCCCACCCTTCAT---CATTCCCAGCCATGCC--CATGAGGCTGGAACCTGAGCAGGATAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715124 198 - 106955855 cagcctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcctggccAACAGAGTCAGGATTTGAATCCCTGGATCCGATATCAGCAGGATTTCCGTGTCTTACCTGTCAGCGCCAACATCCCTCTGACCGCCCCCACCCTTCAT---CATTCCCAGCCATCCC--CATGAGGCTGGAACCTGAGCAGGATAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60003484 198 +  64156825 cagcctcggcctctcaaagtgctgggattacaggtgtgagccaccacgcctggccAGCGGAGTCAGGATTTGAATCCCTGGATCCGATATCAGCAGGATTTCCGTGTCTTACCTGTCAGCGCCAACATCCCTCTGACCGCCCCGACCCTCCAT---CATTCCCAGCCATCCC--CATGAGGCTGGAACCTGAGCAGGATAAAA
i rheMac3.chr19             M 128 C 0
s macFas5.chr19              55026962 198 +  59248254 cagcctcggcctctcaaagtgctgggattacaggtgtgagccaccacgcctggccAGCGGAGTCAGGATTTGAATCCCTGGATCCGATATCAGCAGGATTTCCGTGTCTTACCTGTCAGCGCCAACATCCCTCTGACCGCCCCGACCCTCCAT---CATTCCCAGCCATCCC--CATGAGGCTGGAACCTGAGCAGGATAAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133206 198 +  51301725 cagcctcggcctctcaaagtgctgggattacaggtgtgagccaccacgcctggccagcggagtcaggatttgaatcccTGCATCCGATATCAGCAGGATTTCCGTGTCTTACCTGTCAGCGCCAACATCCCTCTGACCGCCCCGACCCTCCAT---CATTCCCAGCCATCCC--CATGAGGCTGGAACCTGAGCAGGATAAAA
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45417919 198 +  49145316 ccatctcggcctcccagagtgctgggattacaggcgtgagccaccgagcccagccA--AGAGTCAGGATTTGAATCCCTGGATCCGATATCCGCAGGATTTTCGTGTCTTACCTGTCAAGGCCAACGTCCCTCTGACCGCCCCCACCCCTCAT---CATTCCCAGCCCTCCCAACATGAGGCTGGAACCTCAGCAAGATTAAA
i calJac3.chr22             I 12 M 244
s mm10.chr7                   3670796 156 + 145441459 ctgcctctgcctccc-gagtgctgggattaaaggcgtgcgccaccacgcccggct-------------------------------------------CTTCTCTGTCTTATTTGT-AGAACCTTTTTCCACCTGTCCCTTTCCCCCTTCTGTCTGCACTCCCTTCCCATCC--CATGAGTCCAGAACCTAAGCAGGATCAAG
i mm10.chr7                 I 1 C 0
s canFam3.chr1               19627102 118 - 122678785 ---------------------------------------------------------------------------cactgggtccCATATCCAGGGGATTTCTGTGCCTTGTGTACTAGAGCCAGTGTCTTTCACACCAGCCCTGCC----GT---CATCCCCAG-CACACC--CACAGAGGTAGAACCTGAGCAGGATAAAA
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46844259  58 +  50890351 I

a score=446991.000000
s hg38.chr19_GL949751v2_alt    138584 161 +   1002683 ACGATCTGGCGACTCCGAGTGTAGCCCTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAGCACAAAATTGACCCCAGCGATGAAGATGGACGGAAGGTAATTCACCCCAAGCTTCAGCAGTGGCAACTCCTGGACAAGGGGCATCTCCTGGGAGCGGGA----
s panTro4.chr19              59072627 161 +  63644993 ACGATCTGGCGACTCCGAGTGTAGCCCTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAGCACAAAATTGACCCCAGCGATGAAGATGGACGGAAGGTAATTCACCCCAAGCTTCAGCAGTGGCAACTCCTGGACAAGGGGCATCTCCTGGGAGCGGGA----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949292 161 +  60714840 ACGATCTGGCGACTCCGAGTGTAGCCCTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAACACAAAGTTGACCCCAGCGATGAAGATGGACGGAAGGTAATTCACCCCAAGCTTCAGCAGTGGCAACTCCTGGACAAGGGACATCTCCTGGGAGGGGGA----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715322 161 - 106955855 ACGATCTGGCGACTCCGAGTGTAGCCCTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAGAACAAAGTTGACCACAGCGATGAAGATGGACGGAAGGTAATTCACCCCAAGCTTCAGCAGTGGCAACTCCTGGACAAGGGGCATCTCCTGGGAGGGAGA----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60003682 161 +  64156825 ACGATCTGGAGACTTCTAGTGTAGCCTTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAGCACAAAGTTGACCCCAGCGATGAAGATGGACGGAAGGTAATTCACCACAAGCTTCAGCAGTGGCAACTGCTGAACAAGGGGCTTCTCCTGGGAGAGGGA----
i rheMac3.chr19             C 0 I 384
s macFas5.chr19              55027160 161 +  59248254 ACGATCTGGAGACTTCTAGTGTAGCCTTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAGCACAAAGTTGACCCCAGCGATGAAGATGGACGGAAGGTAATTCACCACAAGCTTCAGCAGTGGCAACTGCTGAACAAGGGGCTTCTCCTGGGAGAGGGA----
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47133404 161 +  51301725 ACGATCTGGCGACTTCTAGTGTAGCCTTCCAGTGGAGCAATGAGCTTGAACACGGGCGGCAGCACAAAGTTGACCACAGCGATGAAGATAGACGGAAGGTAATTCACCACAAGCTTCAGCAGTGGCAACTGCTGAACAAGGGGTGTCTCCTGGGAGAGGGA----
i papAnu2.chr19             C 0 I 1
s mm10.chr7                   3670952 161 + 145441459 ACGATCTGTCGGCTTTGAGTGTAGCCCTCTAGTGAGGCAATGAACTTGAACACAGGAGGCAGCACAAAGTTGAACAGAGAAATGAAGATGGATGGTAGATAATCCACCAGAAGCTTGAATAGTGGGGTCTGTCGGACAAGGGGCGTCTCCTGAAAGGGAGA----
i mm10.chr7                 C 0 I 46
s canFam3.chr1               19627220 165 - 122678785 GCAATCTGGTGGCTCCTGGTGTAGCCCTCCAGCAGGGCGATGAGCTTGAACACAGGTGGCAGCAAGAAGTTAACCCCAGAGATGAAGATGGATGGAAGGTAATCCACCAGGAGCTTTAGCAGTGGCATCTGCTGGACAGAGGGCGTCTCCTGGGAGAGAGGGTGG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45418117 244 +  49145316 M
e chlSab2.chr6               46844259  58 +  50890351 I

a score=119309.000000
s hg38.chr19_GL949751v2_alt    138745 59 +   1002683 TGGACCATGAGTAGAGGCT-TGGGGTCCTGG-----AGGAGCCAAGCTTAAGGTCCTCCCCCCGG
s panTro4.chr19              59072788 59 +  63644993 TGGACCATGAGTAGAGGCT-TGGGGTCCTGG-----AGGAGCCAAGCTTAAGGTCCTCCCCCCGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949453 59 +  60714840 TGGACCATGAGTAGAGGCT-TGGGGTCCTGG-----ACGAGCCAAGCTTAAGATCCTCCCCCCGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715483 59 - 106955855 TGGATCATGAGTAGAGGCT-TGGGGTCCTGG-----AGGAGTCAAGCTTAAGGTCCTCCCCCCGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60004227 59 +  64156825 TGGACCATGAGTAGAGGCT-TGGGGTCCTGG-----AGGAGCCAAGCTTAAGGTCCTCCCCCAGA
i rheMac3.chr19             I 384 C 0
s macFas5.chr19              55027322 59 +  59248254 TGGACCATGAGTAGAGGCT-TGGGGTCCTGG-----AGGAGCCAAGCTTAAGGTCCTCCCCCAGA
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47133566 59 +  51301725 TGGACCATGAGTAGAGGCT-TGGGGTCCTGG-----AGGAGCTAAGCTTAAGGTCCTCCTCCAGA
i papAnu2.chr19             I 1 C 0
s canFam3.chr1               19627385 64 - 122678785 TGGATCAAGCAAAGAAGCTCTGGGCTTCTGGTCCTCCAGAACCTTGCTAAATGTCCTCCCCCAG-
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3671113 46 + 145441459 I
e calJac3.chr22              45418117 244 +  49145316 M
e chlSab2.chr6               46844259 58 +  50890351 I

a score=13926.000000
s hg38.chr19_GL949751v2_alt    138804 13 +   1002683 CCTCTTCttc--------ttc
s panTro4.chr19              59072847 13 +  63644993 CCTCTTCTTC--------ttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949512  7 +  60714840 CCtcttt--------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715542 13 - 106955855 CCtcttcttc--------ttc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60004286 21 +  64156825 CCTCTTCTTTGTTGTttattt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55027381 17 +  59248254 CCTCTTCTTTGttg----ttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133625 17 +  51301725 Cctcttctttgttg----ttt
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45418362 12 +  49145316 -Ctttttttt--------ttt
i calJac3.chr22             M 244 C 0
s canFam3.chr1               19627449 13 - 122678785 CCTTTTCTTC--------CTC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3671113 46 + 145441459 I
e chlSab2.chr6               46844259 58 +  50890351 I

a score=236005.000000
s hg38.chr19_GL949751v2_alt    138817 121 +   1002683 ttcttc-----tttttttttttttttttgagacagagtctcgctctgttgcccagcctagaatgcagcggtgcgatctcggctcgc-tgcaacctctgcctcccgggttcaagtgattctcctgcct
s panTro4.chr19              59072860 125 +  63644993 ttcttcc-ttttttttttttttttttttgagacagagtctcgctctgttgcccaggctagagtgcagtggtgcgatctcggctcgc-tgcaacctctgcctcccgggttcaagtgattctcctgcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949519 115 +  60714840 -----------tttttttttttttttttgagacagagtctcgctctgttgcccaggctggagtgcagtggtgcgatctcggctcgc-tgcaacctctgccactctggttcaagtgattctcccacct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715555 117 - 106955855 tt---------tttttttttttttttttgagacagagtcttgctctgttgcccaggctggagtgcagtggtgcgatctcggctcgc-tgcaacctccgcctcccgggttcaagtgattctcctgcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60004307 122 +  64156825 ttgt----tttgtttctttgtttgttttgagacagagtctggctctgtcacccaggctggagtgcagtggtgcaatcttggctcac-tgcaacctccgcctcccgggttcaagtgattcttctgcct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55027398 122 +  59248254 ttgt----tttgtttctttgtttgttttgagacagagtctggctctgtcacccaggctggagtgcagtggtgcaatcttggctcac-tgcaacctccgcctcccgggttcaagtgattcttctgcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133642 126 +  51301725 ttgttttgtttgtttctttgtttgttttgagacagagtctggctctgtcacccaggctggagtgcagtggtgcaatcttggctcac-tgcaaccttcgcctcccgggttcaagtgattcttctgcct
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45418374 121 +  49145316 tt------ttttttttttttttttttttttgaaaaagtctgactctgtcactcagggtggagtgcaatggcgtgatctcgggtcacttgcaacctccgcttcccaggttcaagcaattctcctggat
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3671113  46 + 145441459 I
e canFam3.chr1               19627462   0 - 122678785 C
e chlSab2.chr6               46844259  58 +  50890351 I

a score=474212.000000
s hg38.chr19_GL949751v2_alt    138938 243 +   1002683 cagcctcctgagtagctgggattacaggcgcccaccaccacgcccgtctaa-tttttgtatttttagtagagactgtttttcaccatgttggtcaggctggtctggaactcctgacatcgtgat-ccgcccgcctcagcctcccaaagtgctgggattacaggtgtaagccaccgcgcccagccTCTCTTTTTCCTTTAAAATCCCTAAGTCCAGGGTCCGAACATACCCTCTCCCATACTTCCT
s panTro4.chr19              59072985 243 +  63644993 cagcctcctgagtagctgggattacaggcgcccaccaccacgcccgtctaa-tttttgtatttttagtcgagacgggttttcatcatgttggtcaggctggtctggaactcctgacctcgtgat-ccgcccgccttagcctccctaagtgctgggattacaggcgtaagccaccgcgcccagccTCTCTTCTTCCTTTAAAATCTCTAAGTCCAGGATCGGAACATACCCTCTCCCATACTTCCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949634 241 +  60714840 cagcctcctgagtagctgggattacaggcgctcaccaccacgcctgtctaa-tttttgtatttttagtaaagatgggttttcaccatgttggtcaggctggtctggaactcctgaccttgtgat-ccgcccgtctcagcctcccaaattgccgggattacaggcgtgagccaccgcgcccagccTCTCTTCTTCCTTTAAAATCCCTAAGTCCAGGGTCCAAACATACCCTCTCCCATACTTC--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715672 237 - 106955855 cagcctcctgagtagctgggattacaggcgc------ccacgcccgtctaa-tttttgtatttttagtagagacgggttttcaccatgttggtcaggctggtctggaactcctgacctcgtgat-ccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccTCTCTTCTTCCTTTAAAATCCCTAAGTTCAGGGTCCAAACATACCCTCTCCCATACTTCCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60004429 244 +  64156825 cagcctcctgagtagctgggattacaggcgtgcaccaccacgcccgtctaa-tttttgtatttttagtggagacggattttcgccatgttggtcaggctggtctcgaactcctgacctcgtgatcccccccgcctcagcctcccaaagtgctgggattacaggcgtgagctaccgcgcccagtcTCTCTTCTTCCTTTAAAACCCCGAAGTCCAGGGTCCAAACATACCCTCTCCCATACTTCCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55027520 243 +  59248254 cagcctcctgagtagctgggattacaggcgtgcaccaccacgcccgtctaa-tttttgtatttttagtggagacggattttcgccatgttggtcaggctggtctcgaactcctgacctcgtgat-ccccccgcctcagcctcccaaagtgctgggattacaggcgtgagctaccgcgcccagtcTCTCTTCTTCCTTTAAAACCCCGAAGTCCAGGGTCCAAACATACCCTCTCCCATACTTCCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47133768 243 +  51301725 cagcctcctgagtagctgggattacaggcgtgcaccaccacgcccgtctaa-tttttgtatttttagtggagacggattttcgccatgttggtcaggctggtctcgaactcctgaccttgtgat-caccccacctcagcctcgcaaagtcctgggattacaggcgtgagccaccgcgcccagtctctcttcttcctttaaaaCCCCGAAGTCCAGGGTCCAAACATACCCTCTCCCATACTTCCT
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45418495 193 +  49145316 cagcctcctgagtaactgaaattacaggcacgcgccaccacgcccagctaattttttgtatgtttaataaaaatggggtttcactatgttggccaggctggtctcgaactcctgacttcgtgat-ccgcccgcctcggcctcccacagtgctggaattgcaggcgtgagccaccgcgcacggcc-------------------------------------------------CCCTTACTTC--
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19627462  94 - 122678785 CAGCACCCCAA---------AGTCCAAACATACACCCCCAT-CCCTCCTAA----------------------------------------------------------------------GAT-GCCCTC----CAACCT----------TGGAAATGTAAGT----------------------------------------------TCCAGGATGGAAGGACTCTCCTCCC----------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3671113  46 + 145441459 I
e chlSab2.chr6               46844259  58 +  50890351 I

a score=3626012.000000
s hg38.chr19_GL949751v2_alt    139181 1486 +   1002683 CTCTAAGATCTCTGGCATCCCAAACTTCCGTCCCCTCC----------CTCCACCGTTGGAAATGTAGGTTCCAGGACCC----CCTGGCTTCCTCTTCCAAGACCGTCCGCACCTGCAGCTCCACGGTGCACCCCGTAGCCCAGTAGACGCCATAGAAGGCTGCCCCCAGGAGCGCGACCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTGCTGGCCCAGCGTCCGCACCGCAGCCTGGCGCCGCACCACTGTCTCCTCCAGCTCCACCTGAAGGCAGGAGAGATGCCCGCTTGGACTCCATTTCCCAA-GGCGCGGGCCTCCCGGTTCCCCAGGTCTGGCTCTCCAGAGATCCTCCTTAACGTGAACTGATGCA-GCCGTCTCCCCACCCGCTAACAACCTCTGCAG----TCC-----TGGTTC----------CACC----------------CGC----------TCCAGGAAACCAGC---------GGCCCTTTACA--------GCCCCGCCC-----------CTTCGCGGCC-------------------------------------------------------GGATCCAGCAACCCAAGCCCCCATCCCTCCGCGGTCAAT--CTCAGCACCCCAGGCCCCGCCCCTGAGGCTCCGCCCAGCA-TCCCAAGACCCGCCCCTGGTCAGCCCTGCCCA----TCAGAGGCTCCGCCCCCAGGTGGCCCTGCGCTTTATTCCTGGCCT-----GAAGTTCCAGTTCAGCTG-TATCAAG--AC-GCCCTGCTGGCCGCTCCCATCACTTAACTTTGAACCAAATTGCCTT-AGGCCCCGCCCGCTTCTTGTGCTTACTTAAAAAAAAAC---A-----AACTTttttttttttttttt--------ggtagagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggtctcgaactcctagac--tgaagcgatccac-------ctgtctcggtct-------------cccaa----------agtgctggggttacaagcattagccaccgatcccagccCTGGCGCATCCTTTTCCTACACGCTTGGA---GCTCGGGCAGCCCTATCTCGGCCTCCTCTCAACCTTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCTTAGCATCTCTCCGGAGGCCCCATCACCGAGTTAGGCCCTGTGCGTTATCTCAGCCCGGTCCTGTCTGGTCCCTACCCAGTTGCAGACCCCGCTCCCTAATCGCACCTTTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCAGAGACCGAAGTCCCAGGCCGAGAACACCCGGTGGCTGTAGCTGGTCAGAGCCTCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCAGACACCGAGCTGAGAGGGG-AGACCCGGGAGACGGGAAGTGAAAGGACAGCCAGGAACGGGGGTTATGGGGAGACCCCTCATATTGGGACAAATGGGGAAGATGAACCCTAAGGCCTTGGGTACTAGGCGAGTTCCCACCAGACCAGATGGGGAAAGAGTCAAAGAGGCGGAGAC----ACAGTCATT-GAAGGCAAAGTCCAAGGGA--GATTCAGAGACAGTTCTGGGGTG------CAGGCACCCCAA--AGAGAGGCAGAAACCTAGGAGACAG
s panTro4.chr19              59073228 1498 +  63644993 CTCTAAGGTCTCTGGCATCCCAAACTTCCGTCCCCTCC----------CTCCACCGTTGGAAATGTAGGTTCCAGGACCC----CCTGGCTTCCTCTTCCAAGACCCTCCGCACCTGCAGCTCCACGGTGCACCCCGTAGCCCAGTAGACGCCGTAGAAGGCTGCCCCCAGGAGCGCGACCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTGCTGGCCCAGCGTCCGCACCGCAGCCTGGCGCCGCACCACTGTCTCTTCCAGCTCCACCTGAAGGCAGGAGAGATGCCCGCTTGGACTCCATTTCCCAG-GGCGCGGGCCTCCCGGTTCCCCAGGCCTGGCTCTCCAGAGATCCTCCTTAACGTGAACTGATGCA-GCCGTCTCCCCACCCGCTAACAACCTCTGCAG----TCC-----TGGTTC----------CACCCGC------TCCGGGGCGC----------TCCAGGAAACCAGC---------GGCCCTTTACA--------GCCCCGCCC-----------CTTCGCGGCC-------------------------------------------------------GGACACAGCAACCCAAGCCCCCATCCCTCCGCGGCCAAT--CTCAGCACCCCAGGCCCCGCCCCTGAGGCTCCGCCCAGCA-TCCCAAGACCCGCCCCTGGTCAGCCCTGCCCA----TCAGAGGCTCCGCCCCCAGGTGGCCCTGCGCTTTATTCCTGGCCT-----CAAGTTCCAGTTCAGCTG-TATCAAG--AC-GCCCTGCTGGCCGCTCCCATCACTTAACTTTGAACCAAATTGCCTT-AGGCACCGCTCGCTTCTTGTGCTTACTTAGAAAAAAAA---Attttttttttttttttttttttttt--------ggtagagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggtctcgaactcctagac--tcaagtgatccac-------ctgcctcggtct-------------cccaa----------agtgctggggttacaagcatgagccaccgatcccagccCTGGCGCATCCTTTTCCTACACCCTTGGA---CCTCGGGCAGCCCTATCTCGGCCTCCTCTCAACCCTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCTTAGCATCTCTCCGGAGGCCCCATCACCGAGTTAGGCCCTGTGCGTTATCTCAGCCCGGTCCTGTCTGGTCCCTACCCAGTTGCAGACCCCGCTCCCTAATCGCACCTTTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCAGAGACCGAAGTCCCAGGCCGAGAACACCCGGTGGCTGTAGCTGGTCAGAGCCTCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCAGACACCGAGCTGAGAGGAG-AGACCCGAGAGATGGGATGTGAAAGGACAGCCAGGAA-AGGGGTTATGGGGGGACCCCTCATATTGGGACAAACGGGGAAGATGAACCCTAAGGCCTTGGGTACTAGGCGAGTTCCCACCAGACCAGATGGGGAAAGAGTCAAAGAGGTGGAG------ACAGTCATT-GAAGGCAAAGTCCAAGGGA--GATTCAGAGACAGATCTGGGGTG------CAGGCACCCCAA--AGAGAGGCAGAAACCTAGGAGACAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55949875 1490 +  60714840 --CTAAGATCTCTGGCATCCCAAACTTCCGTCCCCTCC----------CTCCACCGTTGGAAATGTAGGTTCCAGGACCC----CCTGGCTTCCTCTTCCAAGACCCTCCGCACCTGCAGCTCCACGGTGCACCCCGTAACCCAGTAGACGCCATAGAAGGCTGCCCCCAGGAGCGCGACCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTGCTGGCCCAGCGTCCGCACCGCAGCCTGGCGCCGCAACACTGTCTCCTCCAGCTCCACCTGAAGGCAGGAGAGATGCCCGCTTGGACTCCATTTCCCAA-GGCGCGGGCCTCTCGGTTCCCCAGGCCTGGCACTCCAGAGATCCTCCTTAACGTGAACTGATGCA-GCCGTCTCCCCACCCGCTAACAACCTCTGAAG----TCC-----TGGTTC----------CACCCGC------TCCGGGGCGC----------TCCGGGAAACCAGC---------GGCCCTTTACA--------GCCCCGCCC-----------CTTCGCGGCC-------------------------------------------------------AGATCCAGCAACCCAAGCCCCCATCCCTCCGCGGCCAAT--CTCAGCACCCCAGGCCCCGCCCCTGAGGCTCCGCCCAGCA-CCCCAAGGCCCGCCCCTGGTCTGCCCTGCCCA----TCAGAGGCTCTGCCCCCAGGCGGCCCTGCGCTTTATTCCTGGCCT-----GAAGTTCCAGTTCAGCTG-TATCAAG--AC-GCCCCGCTGGCTGCTCCCATCACTTAACTTTGAACCAAATTGCCTT-AGGCCCCGCCCGCTTCTTGTGCTTACTTTAAAAAAAACCAAA-----AACTTtcttttttttttttt------agggtagagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggtctcg-------------tcaagcgatccac-------ctgcctcggtct-------------cccaa----------agtgctggggttacaagcttgagccaccgatcccagccCTGGCGCATCCTTTTCCTACACCCTTGGA---CCTCGGGCAGCCTTATCTCGGCCTCCTCTCAACACTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCCTAGCATCTCTCCGGAGGCCCCATCACCGAGTTAGGCCCTGTGCGTTATCTCAGCCCGGTCCTGTCTGGTCCTTACCCAGTTGCAGACCCCGCTTCCTAATCGCACCTTTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCAGAGGCCGAAGTTCCAGGCCGAGAACACCCGGTGGCTGTAGCTGGTCAGAGCCTCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCAGACACCGAGCTGAGAGGGG-AGACCCGGGAGATGGGATGTGAAAGGACAGCCAGGAACAGGGGTTATGGGGGGACCTCTCATATTGGGACAAACGGGGAAGATGAACCCTAAGGCCTTGGGTACTAGGCGAGTTCCCACCAGACCAGATAGGGAAAGAGTCAAAGAGGCGGAGAC----ACAGTCATT-GAAGGCAAAGTCCTGGAGA--GATTCAGAGACAGATCTGGGGTG------CAGGCACCCcaaagagagaggcagaaaccgaggagacag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102715909 1501 - 106955855 CTCTAAAATCTCTGGTATCCCAAACTTCCGTCCCCTCC----------CTCCACCGTTGGAAATGTAGGTTCCAGGACCC----CCTGGCTTCCTCTTCCAAGACCCTCCGCACCTGCAGCTCCACGGTGCACCCCGTAGCCCAGTAGATGCCATAGAAGGCTGCCCCCAGGAGCGCGACCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTGCTGGCCCAGCGTCCGCACCGCAGCCTGGCGCCGCACCACTGTCTCCTCCAGCTCCACCTGAAGGCAGAAGAGATGCCCGCTTGGACTCCATTTCCCAA-GGCGCGGGCCTCTCGGTTCCCCAGGCCTGGCTCTCCAGAGATCCTCCTTAACGTGAACTGATGCAGGCGGTCTCCCCACCCGCTAACAACCTCTGCAG----TCC-----TGGTTC----------CACTCGC------TCCGGGGCGC----------TCCAGGAAACCAGC---------GGCCCTTTACA--------GCCCTGCCC-----------CTTCGCGGCT-------------------------------------------------------GGATCCAGCAACCCAAGCACCCATCCCTCCGCGGCCAAT--CTCAGCACCCCAGGCCCCGCCCCGGAGGCTCCGCCCAGCA-TCCCAAGACCCGTCTTTCGTCAGCCCTGCCCA----TCAGAGGCTCCGCCCCCAGGCGGCCCTGCGCTTTATTCCTGGCCT-----GAAGTTCCAGTTCAGCTG-TTTCAAG--ACGGCCCCGCTGGCCGCTCCCATCACTTAACTTTGAACCAAATTGGCTT-AGGCCCCGCCCGCTTCTTGTGCTTACTTAAAAAAAAAA---A-----AAAGTttttttttttttt----------ggtatagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggtctcgaactcctagac--tcaagcgatccac-------ctgcctcggtct-------------cccaa----------agtgctggggttacaagcatgagccaccgatcccagccCTGGCGCATCCTTTTCCTACACCCTTGGACCTCCTCGGGCAGCCCTATCTCGGCCTCCTCTCAACCCTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCCTAGCATCTCTCCGGAGGCCCCATCACCGAGTTAGGCCCTGTGCGTTATCTCAGCCCGGTCCTGTCTGGTCCCTACCCAGTTGCAGATCCCGCTCCCTAATCACACCTTTAATTCGTACAAGATGATGCGCTGTCGCAGCCGCACGTGGACGTCCCCGCAGAGGCCGAAGTCCCAGGCCGAGAACACCCGGTGGCTGTAGCTGGTCAGAGCCTCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCAGACACCGAGCTGAGAGGGG-AGACCCGGGAGACGGGATGTGAAAGGACAGTCAGGAACGGGGGTTATAGGGGAACCCCTCATACTGGGACAAACGGGGAAGATGAACCCTAAGGCCTTGGGTACTAGGCGAGTTCCCACCAGACCAGATGGGGAAAGAGTCAAAGAGGCAGAGAC----ACAGTCATT-GAAGGCGAAGTCCAAGGGA--GATTCAGAGACAGATCTGGGGTG------CAGGCACCCCAAAGAGAGAGGCAGAAACCTAGGAGACAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60004673 1457 +  64156825 CTGTAAGATCTCTGGCATCCCAAACTTCCATTCCCTCC----------CTCCATCGTTGGAAATGTAGGTTCCAGGA-CC----CCCGGCTTCCTCTTCCAAGACCCTCCGCACCTGCAGCGCCACGGTGTTCTCTGTAGCCCAGTAGATGCCATAGAAGGCTCCCCCAAGGAGTGCGATCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTCCTGGCCCAGAGTCCGCACAGCAGCCTGGCGCCGCACCACTGTCTCCTCCAGCTCCACCTGAAGGCACGAGAGATGCCCGCTTGGACTCCATTTCCCAA-GGCGCTGGCCTCTGGGTTCCCCA-----GGCTCTCCAGAGATCCTCCTCAACGTGAACTGATGCA-GCCTTCTCCCCACCAGCTAACAACCTCTGCAG----TCC-----CGGTTC----------CACCCGC------TCCGGGGCGC----------TCTAAGAAACCAGT---------GGCCCTTTACA--------GCCCTGCCC-----------CTCCGCGGCC-------------------------------------------------------GGATCCAGCAACCCAAGCCCCCATCCCTGCGCGACCAAT--CTCAGCACCCCGGGCCCCGCCCCCGAAGCTCCGCCCAACACCCCCAAGACCCGCCCCTGGTCAGCCCCGCCCA----TCAGAGGCTCCGCCCCCAGGCGGCCCTGCGCTTTATGCCTGGCCT-----GAAGTTCCAGTTCATCTA-TATCAAG--AC-GCCCCGCTGGCCGTTCCCATCACTTAACTTTGAACCAAATTGCCTTAAAGCCCCGCCCGCTTCTTGTGCTT-----------------A-----------------CTTttttt--------ggtagagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggcgtctaactcctagac--tcaagcgatccac-------ctgcctcggtct-------------cccaa----------agtgctggggttacaagcatgagccaccgatcccagccTTGGTGCATCTTTTTCCTACACCCTTGGA---TCTCGGGCAGCCTTATCGCGGCCTCCTCTCAACCCTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCCTAGCGTCTCTCCGGAGGCCCCATCACCGGGTTAGGCCCTGTGCGTTATCTCAGCCCAGTCCTGTCTGGTCCCTACCCCGTTGCATAACCCGC-CCCCAATCGCACCTGTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCAGAGACCGAAGTTCCAGGCTGAGAACACCCGGTGGCTGTAGCTGGTCAGATCCCCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCGGACACCGAGCTGAGAGGAG-AGAC---------AGGATGTGAAAGGACAGCCAGGAACGGGGGTTATGGGGGCATCCTTCATATTGGGACCAACGGGGAAGACGAACCCTAAGGCCTTGGGTACTAGCGGAGCTGCC-----ACCAGATGGGGAAAGGGTCAAAGAGGCGGAGACACCTACAATCATT-GAAGGCAAAGTCCAAGGGA--GATTCAGAGACAGACCTGGGGCA------CAGGCACCCcacagagagaggcagaaacctaggagacag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55027763 1457 +  59248254 CTGTAAGATCTCTGGCATCCCAAACTTCCATTCCCTCC----------CTCCATCGTTGGAAATGTAGGTTCCAGGA-CC----CCCGGCTTCCTCTTCCAAGACCCTCCGCACCTGCAGCGCCACGGTGTTCTCTGTAGCCCAGTAGATGCCATAGAAGGCTCCCCCAAGGAGTGCGATCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTCCTGGCCCAGAGTCCGCACAGCAGCCTGGCGCCGCACCACTGTCTCCTCCAGCTCCACCTGAAGGCACGAGAGATGCCCGCTTGGACTCCATTTCCCAA-GGCGCTGGCCTCTGGGTTCCCCA-----GGCTCTCCAGAGATCCTCCTCAACGTGAACTGATGCA-GCCTTCTCCCCACCAGCTAACAACCTCTGCAG----TCC-----CGGTTC----------CACCCGC------TCCGGGGCGC----------TCTAAGAAACCAGT---------GGCCCTTTACA--------GCCCTGCCC-----------CTCCGCGGCC-------------------------------------------------------GGATCCAGCAACCCAAGCCCCCATCCCTGCGCGACCAAT--CTCAGCACCCCGGGCCCCGCCCCCGAAGCTCCGCCCAACACCCCCAAGACCCGCCCCTGGTCAGCCCCGCCCA----TCAGAGGCTCCGCCCCCAGGCGGCCCTGCGCTTTATGCCTGGCCT-----GAAGTTCCAGTTCATCTA-TATCAAG--AC-GCCCCGCTGGCCGCTCCCATCACTTAACTTTGAACCAAATTGCCTTAAAGCCCCGCCCGCTTCTTGTGCTT-----------------A-----------------CTTttttt--------ggtagagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggtgtcgaactcctagac--tcaagcgatccac-------ctgcctcggtct-------------cccaa----------agtgctggggttacaagcatgagccaccgatcccagccTTGGTGCATCTTTTTCCTACACCCTTGGA---TCTCGGGCAGCCTTATCGCGGCCTCCTCTCAACCCTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCCTAGCGTCTCTCCGGAGGCCCCATCACCGGGTTAGGCCCTGTGCGTTATCTCAGCCCAGTCCTGTCTGGTCCCTACCCCGTTGCATAACCCGC-CCCCAATCGCACCTGTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCAGAGACCGAAGTTCCAGGCTGAGAACACCCGGTGGCTGTAGCTGGTCAGATCCCCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCGGACACCGAGCTGAGAGGAG-AGAC---------AGGATGTGAAAGGACAGCCAGGAACGGGGGTTATGGGGGCATCCTTCATATTGGGACCAACGGGGAAGACGAACCCTAAGGCCTTGGGTACTAGCGGAGCTGCC-----ACCAGATGGGGAAAGGGTCAAAGAGGCGGAGACACCTACAATCATT-GAAGGCAAAGTCCAAGGGA--GATTCAGAGACAGACCTGGGGCA------CAGGCACCCCACAGAGAGAGGCAGAAACCTAGGAGACAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47134011 1442 +  51301725 CTGTAAGATCTCTGGTATCCCAAACTTCTGTTCCCTCC----------CTCCATCGTTGGAAATGTAGGTTCCAGGACCC----CCCGGCTTCCTCTTCCAAGACCCTCCGCACCTGCAGCGCCACGGTCATCTCTGTAGCCCAGTAGATGCCATAGAAGGCTCCCCCAAGGAGTGCGATCACCAGCAGGTTGAGCAGCACCCGCACCAACCAAACCCTGGCTTCCTGGCCCAGAGTCCGCACAGCAGCCTGACGCCGCACCACTGTCTCCTCCAGCTCCACCTGAAGGCACGAGAGATGCCCGCTTGGACTCCATTTCCCAA-GGCGCTGGCCTCTGGGTTCCCCA-----GGCTCTCCAGAGATCCTCCTCAACGTGAACTGATGCA-GCCGTCTCCCCACCCGCTAACAACCTCTGCAG----TCC-----CGGTTC----------CACCCGC------TCCGGGGCGC----------TCTAAGAAACCAGT---------GGCCCTTTACA--------GCCCTGCCC-----------CTCCGCGGCC-------------------------------------------------------GGATCCAGCAAccccagcccccatccctgcgcggccaat--ctcagcaccccgggccccgcccccgaagctccgcccaacacccccaaga----------------cccgccca----tcagaggctccgcccccaAGCGGCCCCGCGCTTTATGCCTGGCCT-----GAAGTTCCAGTTCATCTA-TATCAAG--AC-GCCCCGCTGGCCGCTCCCATCACTTAACTTTGAACCAAATTGCCTTAAAGCCCCGCCCGCTTCTTGTGCtt-----------------a-----------------cttttttt--------ggtagagagggagcc------------------------------------------tccctatgt----------------------------tgccc--------aggctggtgtcgaactcctagac--tcaagcgatccac-------ctgcctcggtct-------------cccaa----------agtgccggggttacaagcatgagccaccgatCCCAGCCTTGGTGCATCTTTTTCCTACACCCTTTGA---TCTCGGGCAGCCTTATCGCGGCCTCCTCTCAACCCTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAGGAGCTGCCTAGCGTCTCTCCGGAGGCCCCATCACCGGGTTAGGCCCTGTGCGTTATCTCAGCCCAGTCCTGTCTGGTCCCTACCCCGTTGCATAACCCGC-CCCCAATCGCACCTGTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCAGAGGCCGAAGTTCCAGGCTGAGAACACCCGGTGGCTGTAGCTGGTCAGATCCCCGGACTCCGCCAGCAGTGTCTGCTTCAGCCCGGACACCGAGCTGAGAGGGG-AGAC---------AGGATGTGAAAGGACAGCCAGGAACGGGGGTTATAGGGGCATCCTTCATATTGGGACCAACGGGGAAGACGAACCCTAAGGCCTTGGGTACTAGGGGAGCTGCC-----ACCAGATGGGGAAAGAGTCAAAGAGGCGGAGACACCTACAATCATT-GAAGGCAAAGTCCAAGGGA--GATTCAGAGACTGACCTGGGGCA------CAGGCACCccacagagagaggcagaaaccTAGGAGACAG
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45418688 1452 +  49145316 --CTAAGATCTCTGGCGTCCCAGACTTCCGTCCCCTCC----------CTCCACCGTTGGAATTGTAGCTTCCAAGACCC----CCCGACTTCCTTTTCAAAGACCCTCCGCACCTGTAGCTCCACCGTGGACTCTGTGGCCCAGTAGACGCCATAGAACGCTGCCCCCAGGAGCGCGGCCACCAGCAGGTTGAGCAGCACCCGCACCGACCAAACCCTGGCTTGCTGGCCCAGCGTCCGCACCGCAGCCTGGCGACGCAGCATCGTCTCCTCCAGCTCCACCTGAAGGCAGGAGACGTGCCCGCTTGGACTCCATTTCCCAAGGGCGCGGGCCTCTCGGTTCCCCAGGCCTGGCTCTCCAGAGATCCTCCTCCACGTGAACTGCTGCA-GACGTCTCGCCACCCGCTAACAACCTCCGCAG----------------TC----------CACCTGC------GGCCGAGCCC----------CCCGGGAAACCTGC---------GGCCCTTTATC--------GCCCCGCCC-----------CTCCGCGGCC-------------------------------------------------------GGGTCCCGCAATCCAAGCCCCTAACCCTCTGTGGCCAAT--CTCAGCACCC--------------AAAGCTCCGCCCAGCA--TCCAAGACCCGCCCCTTGTCAGCCCCGCCCA----CCCGAGGCTCCGCCCTCAGGCGGCCCAGCGCTTC-TGCCTGACCT-----GAAGATCCAGTTCAGCGGTTAACAAG--AC-GTGCCGCTGGCCGCTCCCATCACTTAACTTTGAACCAAGTTGCCTT-AGGCCCCGCCCGCTTCTTGGGCTTACTTTAAAAAA------A-----------------TTGTTTTTGGCGAGGGGGtagagtgggagtc------------------------------------------tccctatat----------------------------tgccc--------aggctagtctcgaactcctggac--tcaaatgattcac-------ctgcctcggtct-------------cccga----------agtactggagttacaagcataagccaccgagcccATCCCTTGCGCATCTTTTTCCTACATCCTTGGA---CCTCGGGGAGCCCTATCGCGGCCTGCTCTCAACCCTCTCATTCCCCAGGACCTGCCTTTCTTGGAGAAAGAGCTTCCTAGCGTCTC-CCTGAGGCACCATCGCTGGGTTAGGCCTTGTGCCTTATCTGAGCCCAGCCCTTTCTGATCCCTACCCAGTTGCACACCGCGCCCCCTAAGCGCACCTGTAATTCGTACAAGATGATGCGCTGGCGCAGCCGCACGTGGACGTCCCCGCTGAGGCCGAAATCCCAGGCCGAGAACACCCGGTGGCTGTAGCTGGTCAGAGCCCCGGACTCTGCCAGCAGTGTCTGCTTCAGCCCGGACACGGAACTGAGAGGGG-AGACCCAGGAGACGGGATGTGAAAGGACAGTCAGGAAC-GGGGTTGTGGGGGGA--------GATGGGAGAAACGGGGAAGATGAACCCTAAAGCCTTGGGCACTAGGCGAGCTGCC-----ACCTGATGG----AGAGTC--AGAGGCAGATACACATACAGTCACTAAAAGGCAAAGTCCAAGGGA--GACTGAGAGACAGACCTGGGGTG------CAGGCATCCCAAGGAGAGAGGCAGTAACCTAGGAGATAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3671159 1150 + 145441459 CCCTAAAATCCCAGGAATTCTACACCCCAGTTCACTGCCACAGGGCTTCTTCACCTGTGGAAATGTGAGTTCTAGGACCCAAGGACCCTCCTCCTCCTCCAAGACCCTCTGTACCTGTAGTGTCAAGGTGTACTCGGTGGCCCAGTAGATGCCATAGAAGGCCGCCCCGAGCAGCGCGAGGACCAGCACGTTGAGCAGCGCCCTCATCGACCACACCTTGGCTCGTTGGCTCAGAGTCTGCTCCGCAGCACGGCGCCGGACTACTGCTTCCTCTAGGTCCACCTAAGGCCAATAGGGACTGCTTCTGGAAATCCGTCCCTTCA-GGC-----------------------CTGACTTT----------TCTTCGGATTAAACCGATATA-GCCCTCTCCTT-----------------------------------GTTC----------CATACTC------TCCAGGGCTG----------TCCGTGGGACCATT---------TAATTCTTGGG--------GCACTGGGC-----------CTCTGAAGTC-------------------------------------------------------TGGACTTGCATCCCAGG--TCTGCCACTCCTTAGTTCAT--CCCAGAACTCCAAATCTCGCCCTA----------CCTTCT-GTCCAAGGCCTACCCTTCTTTGGCCCAACACAGAACCCCAGGATCCCCCTCCTATGAGAC-----------TTCCAG---------------CTAGTTCACCTT-TTTGAAGCCAC-GTCC---------------TCATTTCACTTGGGACCA----GTCTT-AGTTC------------------------------------A--------------GTCCCTTTTCT----------------------------------------------------------------------------------------------------------------------------------------------AAATGAATTCC-------AGGTCCCAGCCC-------------CCCAA-------------------------------------CCCTCCCACCC------CGTCAGTCTCCTCCA-----------TGGCAGGCATTCCTAGCCTGGCTTCTGCTTAGCTGTCT-------------------------------------CTTAGCA---------------------------ATGCCTTGCTCCTTATCTTAGTTGGATCTTGTCTGGTTCTCATTTAGTGGTAGCTCCACCTCCCCGAGCACACCTGTAGTTCATACAAAATGATGCGCTGGCGCAGCCGCACGTGCACGTCCCCGCAGAGGCCAAAATTCCAAGCTGAGAACACTCGGTGACTGTAGCTGGTCAGAATGTCTGACTCCGCCAACAGTGTCTCCTTCAACCCGGACACCGAACTGAAAGAAC-AGACCA-------------------------CAGGAGAAGTGTTGGTGGGGGCACCTTACTTAC------------GGAACATACACTCAAAATCCTGTG--ACCAGG-----TGCC-----ACCTGTT------CAAGTCAGATAGTTACAC------AAAGTCTTT-GGAACCAAAGACTGA-AGA--GAT----AGGAGAATTTAGGGGACACTGCCAGATCTCCAGAGGAAAGAGGGAGATATCTAGGAAAGAG
i mm10.chr7                 I 46 I 2258
s canFam3.chr1               19627556 1435 - 122678785 --------------------------------------------------------------------------------------------------CCAGGACCCTCCACACCTGAAGCTCCACGGTGGCCCCTGTAGCCCAGTAGATTCCGTAGAAGGCCGCTCCCAGGAGTGCAATCACCAGCAGATTGAGCAGGATCCGCACCGACCACACCCTGGCTTGCTGGCCCAGGGTCCGCGCTGCAGCCTGGCGCCGCACCACAGCTTCCTCCAGCTCCACCTGAGGCCAGGAAAGACGTCCTTGTGGGCTCAAGTCCCACA-GACA----------GGCCCGGCA-----GGTGGTTCAGAACCCCAGCTCAACATGAACTGACACA-GCAG------CACCCTCTAAAGACTTCTGCAGgggatccctggatggctcggtggtttagcacctgcctttgacccagggcgtgatcctggagtcccgggatcgagttccgcatcaggctctctgcatggagcctgcttcaccctctgcctgtgtctctgcgtctctctgtgtctctcatgaataaataaataaaatcttaaaaaaaaaAAAAAAAAAAAGACTTCTGCAGTTCTTGTCCCAATCCCCCCATGGTCCTCTACTGGACAATTTAGATCTCCCACCT---------CTCCACA-GCCCAGGGCTCCAC--------ACCGCGCCCC----TCCGAGGCCCCGCCC------AGCCCT----------CCTGGGCTGGGGCGGAGTTCCAGTTCTACTT-TTTTtta--tt----------------------------------------ttttttt-aatttttatttatttatgatagtcac---------------a---------------------------------gagagagagagaggcagagacacaggcagagggagaagcaggctccatgcaccgggagcccgacgtgggactcgatcccgggtctccagaatcgcgccctgggccaaaggcaggcgccaaaccgctgcgccacccagggatcccTAGTTCTACTTTCTTGGCCTCCTTCTGGCCATGCCCAAGTCCTCACCCAGTGCAGAGG-----AGCTTCATGCCCCGCCCCCCTCCC-GCTGCCTGATTTTCCTGTCCCCTTTGA---CATCAGGTATCCCAACTGGGGCCTCGTCCCAGCCCTCTCATTTCGCAAGGCCCGCCTCCTTAGGAGAACGTTCCGCCCAGCGTCGCT--------------------TTGAGCCCCGTCTCGGGTCTGGGCCCCGCCCCCTCTGGTCCTT-------------------TCCCTGAGCTCACCTGCAGCTCATACAGGATGTTGCGCTGGCGCAGCCGCACGTGGACATCCCCACAGAGGCCGAAGTCCCAGGCGGTGAACACCCGATGGCTGTAGCTGGTCAGGGCCCCCGACTCAGCCAACAGCGTCTGTTTCAGTCCTGACACGGAGCTGAGAGAGGAAGGCCCCAGAGACGGGGTGTGGAAGGTCAGTGAGG----------GCGGGGTCACCCCTCTTAT-GGGACTAGCAGGGAA-ATGAACCCTGGGACCTTGGGAATTTGACAAGT----------------------AGAGTCAGAGACGTGCAGACACACACAGTCATG-GGAGCCAAAGACCAAGAGAGGGATTCAGGGGCCGACTGGGGAAG-----GTAGACACCCCGC--AGAGAGCCA----------------
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46844259   58 +  50890351 I

a score=717222.000000
s hg38.chr19_GL949751v2_alt    140667 297 +   1002683 GGACAGAGCCTCGGAGCGAAGGGGGCAGAAACCCAGAGTGAGAGAAACAGAGGCCCTGAGGA-AGACAGAGATGTGGAGGAGGGACAGAGGCCCCAGAGGGA---GATTCGGAGAAAGGGAGAAAAAGACAGTGAGAAAGGGGAAACTACATCTACAAAAGATGGGGGTCAAAGACCCATA-AGAAGTACAGGCACACAGAGAAGGGAGCTGCGGCGGGAAGAGCCGAGAAGAAGACAGAGACCCAGAGAAGATGGCAGGT--AAAGACTCAAGAGA-GGGGGCAggccaggcgcc---atggctcac
s panTro4.chr19              59074726 297 +  63644993 GGACAGAGCCCCGGAGCGAAGGGGGCAGAAACCCAGAGTGAGAGAGACAGAGGCCCTGAGGA-ACACAGAGATGTGGAGGAGGGACAGAGGCCCCAAAGGGA---GATTTGGAGAAAGGGAGAAAAAGACAGTGAGAAAGGAGAAACTACATCTACAAAAGATGGGGGTCAAAGACCCATA-AGAAGTACAGGCACCCAGAGAAGGGAGCTGCGGCGGGAAGAGCCGAGAAGAAGACAGAGACCCAGAGAAGATGGCAGGT--AAAGACTCAAGAGA-GGGGGCAggccaggcgcc---atggctcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55951365 298 +  60714840 ggacagagccccggagcgaaggggacagaaacccagagtgagagagacagaggccctgagga-agacagagatgtggaggagggacacaggccccagaggga---gatttggagaaagggagacaaagacagtgagaaagGAGAAACTAAATCTACAAAAGATGAGGGTCAAAGACCCATA-AGAAGTACAGGCACCTAGAGAAGGGAGCTGCGGTGGGAAGACCCGAGAAGAAGACAGAGACCCAGAGAAGATGGCAGGT--AAAGACTCAAGAGAGGGGGGCAggccaggcgcc---atggctcac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717410 295 - 106955855 GGACAGAGCCCCAGAGCGAAGGGGGCAGAAACCCAGAGTGAGAGAGACAGAGGCCCTGAGGA-AGACAGAGATGTGGAGGAGGGACAGAGGCCCCGGAGGGA---GATTCGGAGAAAGGGAGACAAAGGCAGTGAGAAAGGAGAAACTAAATCTACAAAAGATGGGGGTCAAAGACCCATA-AGAAGTACAGGCATCCAGAGAAGGGAGCTGCGGCGGGAAGACCCG---AGAAGACAGAGACCCAGAGAAGATGGCAGGT--AAAGACTCAAGAGAGGGGGGCAggccaggcgcc---atggctcat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60006130 297 +  64156825 ggacagagccccggagcgaagggggcagaaacccagagtgaaagggacagaggccctgagga-agacagagatgtggaggagggacagaggccccagaggga---gattcgaagaaagggagacaaagacagtgagaaagGAGAAACTAAATCTACAAAAGATGGGGGTCAAAGACCCATA-AGAAGTACAGGCACCCAGAGAAAGGGGCTG-GGCGGGAAGACCCGAGAAGAAGACAGAGACCCAGAGAAGATGGCAGGT--AAAGACTCAAGAGAAGGGGGCACGCCAGGAGCC---ATGATCCAC
i rheMac3.chr19             C 0 I 19
s macFas5.chr19              55029220 297 +  59248254 GGACAGAGCCCCGGAGCGAAGGGGGCAGAAACCCAGAGTGAAAGGGACAGAGGCCCTGAGGA-AGACAGAGATGTGGAGGAGGGACAGAGGCCCCAGAGGGA---GATTCGAAGAAAGGGAGACAAAGACAGTGAGAAAGGAGAAACTAAATCTCCAAAAGATGGGGGTCAAAGACCCATA-AGAAGTACAGGCACCCAGAGAAGGGGGCTG-GGCGGGAAGACCCGAGAAGAAGACAGAGACCCAGAGAAGATGGCAGGT--CAAGACTCAAGAGAAGGGGGCACgccaggagcc---atggctcac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47135453 297 +  51301725 GGACAGAGCCCCGGAGCGAAGGGGGCAGAAACCCAGAGTGAAAGGGACAGAGGCCCTGAGGA-AGACAGAGATGTGGAGGAGGGACAGAGGCCCCAGAGGGA---GATTCGAAGAAAGGGAGACAAAGACAGTGAGAAAGGAGAAACTAAATCTACAAAAGATGGGGGTCAAAGACCCATA-AGAAGTACAGGCACCCAGAGAAGGGGGCTG-GGCAGGAAGACCCGAGAagaagacagagacccagagaagaTGGCAGGT--AAAGACCCAAGAAACGGGGGCacgccaggcgcc---atggctcac
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45420140 276 +  49145316 GGACAGAGCCCCGGATCGAAGGGGCCGGAAAGCCAGTGTGAGAGGGGCAGAGGCCCTGAGGA-AGAT--GGATGCGGAGGAGGGATGGAGGTCCCAGAGGGA---GATTTGGAGAAAGGGAGACAAAGAC--TGAGAAAGGAGAAAGAAAATCTACAAAAGACCCGGGTCAGAGATCCAGA-GGAAGTACAGGCACCCAGAGAAGGGGGCTG-GGTTGGGA------------------AGACCCAGAGAAAACAGCAGGTAGAGAGAATCAAGAGA-GGGGGCAggccaggtgcg---gtggctcac
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19628991 262 - 122678785 ----CGCGCTCCAGAGAGCAGAGGGCGGGGACCCAGAGTGACAAAGACAAAGATCCTGGGGACAGACACAAATGTAGAGGGGAGACTGCGACCCCACTGGGAAAGGATTCAGAGAAAGTG-------GACA--GGGAAATGAGGGAAGAGGTCT-----AGAGAGAGGTCAGAGACTCAGAGGGAAGGACAGACGTCCAGAGAAGGGGGTGA-GGGAGAAAGACCC---------------------AAAGGGTGGAGGAC--TGAGACTCAAAGAAATGGGGCAgg---gacgcctgggtggctca-
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e chlSab2.chr6               46844259  58 +  50890351 I

a score=33876.000000
s hg38.chr19_GL949751v2_alt    140964 19 +   1002683 gcctgtaatcccagcactt
s panTro4.chr19              59075023 19 +  63644993 acctgtaatcctggcactt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55951663 19 +  60714840 acctgtaatcccagcactt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717705 19 - 106955855 gcctgtaatcccagcactt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55029517 19 +  59248254 gcctgtaatcccagcactt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47135750 19 +  51301725 gcctgtaatcccagcactt
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45420416 19 +  49145316 acctgtaatcccagcactt
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19629253 19 - 122678785 gcggttgagcgtctccctt
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e chlSab2.chr6               46844259 58 +  50890351 I
e rheMac3.chr19              60006427 19 +  64156825 I

a score=144045.000000
s hg38.chr19_GL949751v2_alt    140983 81 +   1002683 tgggaggccgaggggggaggatcacctgaggtcaggagtttgagac---cagcctggccaatgtggtgaaaccccgtctctact
s panTro4.chr19              59075042 81 +  63644993 tgggaggccgaggggggaggatcacctgaggtcaggagtttgagat---cagcctggccaatgtggtgaaaccccatctctact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55951682 81 +  60714840 tgggaggccaaggggggaggatcacctgaggtcaggagtttgagac---cagcctggccaatgtggtgaaaccccgtctctact
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717724 81 - 106955855 tgggaggccgaggggggaggatcacctgaggtcaggagtttgagac---cagcctggtcaatgtggtgaaatcccgtctctact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60006446 79 +  64156825 tgggaggccgagacgggcggatcac--gaggtcaggagatcgagac---catcctggctaacacggtgaaaccccgtctctact
i rheMac3.chr19             I 19 C 0
s macFas5.chr19              55029536 49 +  59248254 tgggaggc--------------------------------cgagac---catcctggctaacacggtgaaactccctctctact
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47135769 78 +  51301725 tgggaggccgagacgggcggatcac--gaggtcaggagt-cgagac---catcctggctaacacggtgaaaccccctctctact
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45420435 81 +  49145316 cgggaggccgagtagggaggatcacctgaggtcaggagttccagac---cagcctggccaacatggtgaaaccctgtctctact
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19629272 75 - 122678785 ----aggctcagg-----gcatgatcctgggtctggggattgaatcccacatccggctccctgtggggagcctgcttctccctc
i canFam3.chr1              C 0 I 85
e mm10.chr7                   3672309 2258 + 145441459 I
e chlSab2.chr6               46844259 58 +  50890351 I

a score=193134.000000
s hg38.chr19_GL949751v2_alt    141064  98 +   1002683 aaaaa---tac-aaaaattagccaggcgtggtggtgcatgcctgtaatcccaactacttgggaggctgaggtgggaggatcacttgaacccaggaggtggag
s panTro4.chr19              59075123  98 +  63644993 aaaaa---tac-aaaaattagccaggcgtggtggtgcatgcctgtaatcccaactacttgggaggctgaggtgggaggatcacttgaacccaggaggtggag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55951763  98 +  60714840 aaaaa---tac-aaaaattagccaagcgtggtggtgcatgcctgtaatcccaactacttgggaggctgaggtgggaggatcacttgaacccaggaggtggag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717805  98 - 106955855 aaaaa---tac-aaaaattagccaggcatggtggtgcatgcctgtaatcccaactacttgggaggctgagctgggagggtcactcaaacccaggaggtggag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60006525 100 +  64156825 aaaaa--atacaaaaagctagccgggcgaggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggag
i rheMac3.chr19             C 0 I 3618
s macFas5.chr19              55029585 102 +  59248254 aaaaatttttttaaaaattagccgggcgaggtggcgggcgcctgtaggcccagctactcgggaggctgaggcaggagaatggcgtaaacccgggaggcggag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47135847  99 +  51301725 aaaaa---tacaaaaaactagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggag
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45420516  99 +  49145316 aaaaa---tttaaaaaatgagccaggtgtggtggcgggcacctgtaatcccagctacttgggaggctgagtcaggaggatcacttgaacccaggaggtggag
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629347  85 - 122678785 I
e chlSab2.chr6               46844259  58 +  50890351 I

a score=4863.000000
s hg38.chr19_GL949751v2_alt    141162 5 +   1002683 gtcgc
s panTro4.chr19              59075221 5 +  63644993 gtcgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55951861 5 +  60714840 gtCAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717903 5 - 106955855 gtCAC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55029687 5 +  59248254 cttgc
i macFas5.chr19             C 0 I 9250
s papAnu2.chr19              47135946 5 +  51301725 cttgc
i papAnu2.chr19             C 0 I 3196
s calJac3.chr22              45420615 5 +  49145316 gttac
i calJac3.chr22             C 0 I 25
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629347 85 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=10070.000000
s hg38.chr19_GL949751v2_alt    141167 25 +   1002683 ---------------------CTCC----------AAAAAAAAAAAAAAAAGACCC
s panTro4.chr19              59075226 26 +  63644993 ---------------------CTCC---------GAAAAAAAAAAAAAAAAAACCC
i panTro4.chr19             C 0 I 118
s ponAbe2.chr19              55951866 19 +  60714840 ---------------------CTCC----------------AAAATAAAAAGGCCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717908 25 - 106955855 ---------------------CTCC----------AAAAAAAAAAAAAAAAGACCC
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45420645 56 +  49145316 ctccagcctggctgacaaagactcctgctcaaaaaaaaaaaaaaaaaaaaaaaCAC
i calJac3.chr22             I 25 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629347 85 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e papAnu2.chr19              47135951 3196 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=422.000000
s hg38.chr19_GL949751v2_alt    141192 1 +   1002683 A
s panTro4.chr19              59075370 1 +  63644993 A
i panTro4.chr19             I 118 C 0
s ponAbe2.chr19              55951885 1 +  60714840 G
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717933 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45420701 1 +  49145316 A
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629347 85 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e papAnu2.chr19              47135951 3196 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=226477.000000
s hg38.chr19_GL949751v2_alt    141193 244 +   1002683 GAGA-AGACGGGCAGGTAAAGAGACTCAAGAGAGGGGGGCAAAGACCCAGGAAGGAGAT-AGAGAACCCCA-----GCAGGGGCAGAAACAGAACTGGACAAAGAGa--ccatgtgcaccttcactgccctggccccggcccccatcatctctcatgtgaacaaccacagagggccctcacatggtctccttgcttccacttgtgcccgcatataatccattctcagttcttgagccagtgggacc-ttctttt
s panTro4.chr19              59075371 244 +  63644993 GAGA-AGACGGGCAGGTAAAGAGACTCAAGAGAGGGGGGCAAAGACCCAGGAAGGAGAT-AGAGAACCCCA-----GCAGGGGCAGAAACAGAACTGGACAAAGAGa--ccgtgtgcaccttcactgccctggccccggcccccatcatctctcatgtgaacaaccacagagggcccccacatggtctccttgcttccacttgtgcccgcttataatccattctcagttcttgagcgagtgggacc-ttctttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55951886 244 +  60714840 GAGA-AGACAGGCAGGTAAAGAGACTCAAGAGAGGTGGGCAAAGACCCAGGAAGGAGAT-AGAGAACCCCA-----GCAGGGGCAGAAACAGAACTGGACAAAGAGa--ccatgtgcaccttcaccgccctggccctggcccccatcatctcgcatgtgaacaaccacagagggcccccacatggtctccttgcttccacttgtgcctgcttataatccattctcggttcttgagccagtgggacc-ttctttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102717934 245 - 106955855 GAGA-GGACAGGCAGGTAAAGAGACTCAAGAGAGGGGGGCAAAGACCCAAGAAGGAGAT-AGAGAACTCTA-----GCAGGGGCAGGAACAGAACTGGACAAAGAGa--ccatgtgcaccttcactgccctggccctggcccccatcatctctcacgtgaacaaccacagagggcccccacatggtctccttgcttccacttgtgcccgcttataatccattctcagtttttgagccagtgagacctttctttt
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45420702 244 +  49145316 GAGACAGAC---CCCGAGAAGAGTCTCAAAAAAGGGGGGCAAAGACCCAGGAAGGAGATGGGAGAACCACAGCGGGGCAGGGGCAGACACAGAGCTGGACAGAGAGa--ccacgtgcaccttcaccgccctggccct-gcccccatcatct--catgtgaacaacctcagagggcccccacctggtctccttgcttccacctgtgcct-cttataatccattctctcttcttcagccagcaggacc-ttcttcc
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19629432 226 - 122678785 gaaa-agagggaaagggaaagggaaaggaagaagtggggcaaagacccagggagaggac-aaggaa----------gcagag--------aaaaCTGGGCAAAGAGATTccatatccaccctcaatgacctggcacaagcccccagaatctcttgagtggatgactacaga--actgccacctggcctc--tgcttccaccctcgccctcttg-aatccattct--gttcccacactggtggaacc-ttctttt
i canFam3.chr1              I 85 I 4004
e mm10.chr7                   3672309 2258 + 145441459 I
e chlSab2.chr6               46844259  58 +  50890351 I
e papAnu2.chr19              47135951 3196 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=44574.000000
s hg38.chr19_GL949751v2_alt    141437 76 +   1002683 gatgcaactcagaccgtattcccctgtttaagacctattccagggcttttcccttctcttaaaatcgaggc-TCTTT
s panTro4.chr19              59075615 77 +  63644993 gatgcaactcagaccgtattcccctgtttaaaacctattccagggcttttccctgctcttaaaatcgaggcTTCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55952130 75 +  60714840 gattcaactcagaccgtattccc--atttaaaacctattccagggcttttccctgctcttaaaatcgaggcTTTTTg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102718179 77 - 106955855 gatgcaactccgactttaattcccggtttaaaacctattccagggcttttccctgctcttaaaatcgaggcTTCTTg
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45420946 61 +  49145316 ta-gcaactcagaccatatt--------------ctattccagggcttttccctgctcttccaatctaggcttctt-
i calJac3.chr22             C 0 I 2664
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e papAnu2.chr19              47135951 3196 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=48909.000000
s hg38.chr19_GL949751v2_alt    141513 91 +   1002683 gccgggcgtggtggctcacgcctgtaatcccagcactttgggagaccgaggcgggtgcatcacctgaggtcaggagttcgagaccagcctg
s panTro4.chr19              59075692 91 +  63644993 gccgggcatggtggctcacgcctgtaatcccagcactttgggagaccgaggcgggcgcatcacctgaggtcaggagttcgagaccagcctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55952205 91 +  60714840 gccaggcgcagtggctcacgcctgtaatcccagcactttgggagaccgaggtgggcggatcacctgaggtcaggagttcgagaccagcctg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102718256 91 - 106955855 gccgggcacagtggctcacgcctgtaatcccagcactttgggagaccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctg
i nomLeu3.chr10             C 0 M 1121
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e calJac3.chr22              45421007 2664 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e papAnu2.chr19              47135951 3196 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=242761.000000
s hg38.chr19_GL949751v2_alt    141604 936 +   1002683 acaaacatggtgaaaccccatttctactaaaaatacaaaattagccgggcatggtggcacatgcctgtaatcccagctacttgggaggttgaggcaggaaaattgcttgaacccgggcggcggaggttgcagtgagctgagatcgcaccactgcactctagcctgggtgacagagcgagactccgtctc----aaaaaaaaaaaaaGTTGACTTTTggccaggcacattggctcatgcctgtaattccagcaccttgggaggctgaggtgagcagatctcttgagcctaggagtttgagcgcagcctgggcaacatagcaagaccctgtctctataacatt---aaaaaaaaaattttagcaagacatggtggtgcacccctgtggtcccagctgctcccgaggctgaggtaggcggatcagttgagttccggaggcccaggcttccggtgagctatgattgcaccaccgcacgctagccgggtgacagagtgagaccctgtctcaaaaaacaaaaCAgactgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagttcgagaccagcctggccaacatggcgataccccgtctctactaaaaatacaaaaaattagctgggcgtggtggccggagcctgtaaacccagctacttgggagggtgaggcagtagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggcgacagagtaagactctgtctcaaaaacaaacaaacaaaacaaatg------aaaaaCAAAAAC--AAATCCCAAAACCTTGA-tcttttttttttttttagatggagtttcgctctgtcgcccaggctggagtgcagtggcgcaaactcggctcactgcaagctccgcctcc
s panTro4.chr19              59075783 946 +  63644993 accaacatggtgaaaccccatttctactaaaaatacaaaattagccgggcatggtggcacatgcctgtaatcccagctacttgagaggctgaggcaggaaaattgcttgaacccgggaggcggaggttgcagtgagctgaggtcacaccactgcactctagcctgggtgacagagcaagactccgtctc-aaaaaaaaaaaaaaaaGTTGACTTTTggccaggcacattggctcatgcctgtaatcccagcaccttgggaggctgaggtgagcagatctcttgagcctaggagtttgagcgcagcctgggcaacatagcaagaccctgtctctataacatt---aaaaaaaaatttttagcaagacatggtggtgcacccctgtggtcccagctgctcctaaggctgaggtaggaggatcagttgagttccggaggcccaggcttccggtgagctatgattgcaccactgcacgctagtcgggtgacagagtgagaccctgtctcaaaaaacaaaaCAgactgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagttcgagaccagcctggccaacatggcgataccccgtctctactaaaaatacaaaaaattagctgggcgtggtggctggagcctgtaaacccagctacttgggaggctgaggcagtagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggcgacagagtaagactctgtctcaaaaacaaacaaacaaaacaaatgaaaaaCAAAAACAAAAAC--AAATCCCAAAACCTTGAtttttttttttttttttagatggagtttcactctgtcgtccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55952296 928 +  60714840 accaacatggtgaaaccccatctctactaaaaatacaaaattagccgggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggaaaattgcttgaacctgggaggcggaggttgcagtgagctgagatcgcaccactgcactctagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaGTTGACTTTTggccaggcaccttggctcatgcctgtaattccagcaccttgggaggctgaggtgagcagatctcttgagcccaggagtttgagcgcagcctgggcaacatagcaagaccctgtctctataatattaaaaaaaaaaaaaaattagcaggacatggtgatgcgcccctgtggtcccagctgctccagaggctgaggtaggaggaccagttgagttccggaggcccaggcttccagtgagctatgattgcaccactgcactctagccaggtgacagagtgagaccctgtctcaaaaaacaaaaTAGACTCAgcgcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgagatcaggagttcgagaccagcctggccaacatggcgataccccgtctctactaaaaatacaaaaaattagctgggcgtggtggcgggagcctgtaaacccagctacttgggaggctgaggcagtagaatcgcttgaatccgggaggtggaggttgcagtgagccaagatcatgccattgcactccagcctgggcgacagagtaagactctgtctca-------------aaaacaaatg------aaaaacaaaaacaaaaaTCCCAAAACCTTGA-----tcttttttttttagatggagtttcgctctgtcgcccaggctggagtgcaatggcatgatcttggctcactgcaacctccacctcc
i ponAbe2.chr19             C 0 I 225
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e calJac3.chr22              45421007 2664 +  49145316 I
e nomLeu3.chr10             102718347 1121 - 106955855 M
e chlSab2.chr6               46844259  58 +  50890351 I
e papAnu2.chr19              47135951 3196 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=1213.000000
s hg38.chr19_GL949751v2_alt    142540 3 +   1002683 tgg
s panTro4.chr19              59076729 3 +  63644993 tgg
i panTro4.chr19             C 0 I 188
s nomLeu3.chr10             102719475 3 - 106955855 TGA
i nomLeu3.chr10             M 1121 C 0
s papAnu2.chr19              47139147 3 +  51301725 tga
i papAnu2.chr19             I 3196 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e ponAbe2.chr19              55953224 225 +  60714840 I
e calJac3.chr22              45421007 2664 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=558.000000
s hg38.chr19_GL949751v2_alt    142543 2 +   1002683 gC
s panTro4.chr19              59076920 2 +  63644993 gc
i panTro4.chr19             I 188 C 0
s nomLeu3.chr10             102719478 2 - 106955855 GC
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47139150 2 +  51301725 ga
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e ponAbe2.chr19              55953224 225 +  60714840 I
e calJac3.chr22              45421007 2664 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60006625 3618 +  64156825 I

a score=8476.000000
s hg38.chr19_GL949751v2_alt    142545 12 +   1002683 CACCGCTCCTGG
s panTro4.chr19              59076922 12 +  63644993 caccgctcctgg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102719480 12 - 106955855 CACTGCGCCTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60010243 12 +  64156825 caccgcacccgg
i rheMac3.chr19             I 3618 C 0
s papAnu2.chr19              47139152 12 +  51301725 caccgcgcccag
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e ponAbe2.chr19              55953224 225 +  60714840 I
e calJac3.chr22              45421007 2664 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=50500.000000
s hg38.chr19_GL949751v2_alt    142557 43 +   1002683 CCCAAAACCTTGATTTTAACTCACACAGAATAAAGGGTTACAC
s panTro4.chr19              59076934 43 +  63644993 ccCAAAACCTTGATTTTAACTCACACAGAATAAAGGGTTACAC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102719492 43 - 106955855 CCCAAAACCTTGATTTTAACTCACATAGAATAAAGGGTTATAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60010255 43 +  64156825 cACAAAACCTTGATTTGAACTCACACAGAAGAAAGGGTTACAC
i rheMac3.chr19             C 0 I 3
s papAnu2.chr19              47139164 43 +  51301725 caCAAAACCTTGATTTGAACTCACACAGAAGAAAGGGTTACAC
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45423671 43 +  49145316 CCCCAAATCTTGATTTTAACTGAAACAGAAGAAAGGGTTACAC
i calJac3.chr22             I 2664 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e ponAbe2.chr19              55953224 225 +  60714840 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=1566.000000
s hg38.chr19_GL949751v2_alt    142600 3 +   1002683 AGC
s panTro4.chr19              59076977 3 +  63644993 AGC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102719535 3 - 106955855 AGT
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47139207 3 +  51301725 CGC
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45423714 3 +  49145316 AGC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e ponAbe2.chr19              55953224 225 +  60714840 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60010298 3 +  64156825 I

a score=9180.000000
s hg38.chr19_GL949751v2_alt    142603 97 +   1002683 AAGACCGAGGATTCTGGggccgggcgcggtggctcacgcctgtaatcccagcactgtgggaggccgaggcgggtggatcacgaggtcagcagttcaa
s panTro4.chr19              59076980 97 +  63644993 AAGACCGAGGATTCTGGggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcagcagttcaa
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e ponAbe2.chr19              55953224 225 +  60714840 I
e calJac3.chr22              45423717  0 +  49145316 C
e nomLeu3.chr10             102719538  0 - 106955855 C
e chlSab2.chr6               46844259 58 +  50890351 I
e papAnu2.chr19              47139210  0 +  51301725 C
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60010298  3 +  64156825 I

a score=54493.000000
s hg38.chr19_GL949751v2_alt    142700 212 +   1002683 gaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaaagttagctgggcgtggtggcgggcgcctgtaatcccagcaacttgggaggctgaggcaggagaatcgcttgaaaccggaaggcggaggttgcagtgagccgagattgcgccactacactctagcctgggcaataagagcaaaactccgtctcaaaaaaaaa
s panTro4.chr19              59077077 212 +  63644993 gaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaaagttagctgggcgtggtggcgggcgcctgtaatcccagcaacttgggaggctgaggcaggagaatcgcttgaaaccggaaggcggaggtcgcagtgagccgagattgcgccactatactctagcctgggcaataagagcaaaactccgtctcaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55953449 211 +  60714840 gaccagtctgatcaacatggtgaaaccccctttttactaaaaatacaaaaaaattagctgggcgttgtggcgggcgcctataatcccagcaacttgggaggttgaggcaggagaatcgcttgaaaccgtaaggcagaggttacagtgagccgagattgtgccattgcactctag-ctgggcaataagagcaaaactccgtttcaaaaaaaaa
i ponAbe2.chr19             I 225 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e canFam3.chr1               19629658 4004 - 122678785 I
e calJac3.chr22              45423717   0 +  49145316 C
e nomLeu3.chr10             102719538   0 - 106955855 C
e chlSab2.chr6               46844259  58 +  50890351 I
e papAnu2.chr19              47139210   0 +  51301725 C
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60010298   3 +  64156825 I

a score=130995.000000
s hg38.chr19_GL949751v2_alt    142912 79 +   1002683 a-------agaCTGAGGATTCTTGGGGAGGGGGTTTCTGCCACCACCACTTGCT-CCCCCACCCCAACCCGTCCCGTCA-GGGGTCAG----
s panTro4.chr19              59077289 78 +  63644993 a--------gaCTGAGGATTCTTGGGGAGGGGGTTTCTGCCACCACCACTTGCT-CCCCCACCCCAACCCGTCCCGTCA-GGGGTCAG----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55953660 88 +  60714840 aaaagaaaagaCTGAGGATTCTTGGGGAGGCGGTTTCTGCCACCACCACTTGCTCCCCCCACCCCAACCCGTCCCGTCAGGGGGTCAG----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102719538 80 - 106955855 -------AAGACTGAGGATTCTTGGGGAGGGGGTTTCTGCCACCACTACTTGCT-CCCCCACCCCAACCCGTCCCGTCAGGGGGTCAG----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60010301 80 +  64156825 -------AAGACTGAGGATTCTTGGGGAGGGAGTTTCTGCCACCACCACTTGCT-TTCCTACCCCAACCCGTCCCGTCACGGGGTCAG----
i rheMac3.chr19             I 3 C 0
s papAnu2.chr19              47139210 80 +  51301725 -------AAGACTGAGGATTCTTGGGGAGGGAGTTTCTGCCACCACCACTTGCT-TCCCTACCCCAACCCGTCCCGTCACGGGGTCAG----
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45423717 76 +  49145316 -------AAGGCTGAGGATTCCTGGGGAGGGAGTTT-TGCCAGCACCACTTGCT-CCC---CCCCCACCCGTTCTTTCAGGGAGTCAG----
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19633662 71 - 122678785 -------AGGACTCTGGATTCTTGGGGACTGGTCCTCTACCACCACCACTC-CT-TCCCCACGACACC------------AGGGTGGGGATG
i canFam3.chr1              I 4004 C 0
e mm10.chr7                   3672309 2258 + 145441459 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=599252.000000
s hg38.chr19_GL949751v2_alt    142991 257 +   1002683 GGGTGCAGGTGCCACTGACCGATGCAGGATGAGCAGGAGGCAGATGAGGCCAACGGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGCGTGGGCGGGGCGGGTAGAAGCCATAGAAGAGAGGGGACCATTCCAGGTAACCCTGTG-GGGGGA-AGGCGGCGCAGGGGCCACTGTGGGA------GGAGGCGGGGCTCCTGGAGCTGCACAGTCAGGGTCTGGGGTCAGGGTTTGAGGTTCGTGTCATTGAAGGCACTGGGGTCA
s panTro4.chr19              59077367 256 +  63644993 GGGTGCAGGTGCCACTGACCGATGCAGGATGAGCAGGAGGCAGATGAGGCCAACGGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGCGTGGGCGGGGCGGGTAGAAGCCATAGAAGAGAGGGGACCATTCCAGGTAACCCTGTG-GGGG-A-AGGCGGCGCAGGGGCCACTGTGGGA------GGAGGCGGGGCTCCTGGAGCTGCACAGTCAGGGTCTGGGGTCAGGGTTTGAGGTTCCTGTCATTGAAGGCACTGGGTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55953748 257 +  60714840 GGGTGCAGGTGCCACTGACCGATGCAGGATGAGCAGGAGGCAGATGAGGCCAACGGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGCGTGGGCGGGGCGGGTAGAAACCATAAAAGAGAGGGGACCATTCCAGGTAACCCTGTT-GGGGGA-AGGCGACGCAGGGGCCACTGTGGGA------GGAGGCGGGGCTCCTGGAGCTGCACAGTCAGGGTCTGGGGTCAGGGTTTGAAGTTCGTGTCACTGACGGCACTGGGCTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102719618 257 - 106955855 GGGTGCAGGTGCCACTGACCGACGCAGGATGAGCAGGAGGCAGATGAGGCCAACGGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGCGTGGGCGGGGCGGGTAGAAGCCATAGAAGAGAGGGGACCATTCCAGGTAACCCTGTG-GGGGGA-AGGCGGTGCAGGGGCCACTGTGGGA------GGAGGAGGGGCTCCTGGAGCTGCACAGTCAGGGTCCGGGGTCAGGGTTTGAGGTTCGTGTCATTGAAGGCACTGGGCTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60010381 258 +  64156825 GGGTGCAGGTGCCACTGACCGATGCAGGATGAGCAAGAGGCAGATGAGGCCGACGGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGCGTGGGCGGGGCGGGTAGAAGCCATAGAAGAGAGGGGACCATTCCAGGTAACCCTGTGGGGGGGA-AGGCGGCGCGGGGGCCACTGTGGGA------GGAGGCGGGGCTCCTGGAGCTGCACAGTCAGGGTCTGGGGTCAGGGTTTGAGGTTCGTGTCATTGAAGGCACTGGGCTCA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47139290 258 +  51301725 GGGTGCAGGTGCCACTGACCGATGCAGGATGAGCAAGAGGCAGATGAGGCCAACGGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGCGTGGGCGGGGCGGGTAGAAGCCATAGAAGAGAGGGGACCATTCCAGGTAACCCTGTGTGGGGGA-AGGCGGCGCAGGGGCCACTGTGGGA------GGAGGCGGGGCTCCTGGAGCTGCACAGTCAGGGTCTGGGGTCAGGGTTTGAGGTTCGTGTCATTGAAGGCACTGGGCTCA
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45423793 254 +  49145316 GGGTGCAGGTGCCACTGACCGATGCAGGATGAACAGGAGGCAGATGAGGCCAACAGCAAAGGCCCAGCACAGGTAGGTGACCGCCAGGTGTGGGCGGGGCGGGTAGAAGCCATAGAACAGAGGAGACCATTCCAAGTAACCCTGTG-GGGGGA-AGGTGG-GTCGGGGCCACTGTGGGA------GGAGGCAGGGCTCCTGGCGATGCATAATCAGGGTCTGGGGTCAGGGTTTGAGGGGCGTGT--TTGAAAGCACAGGGTTCA
i calJac3.chr22             C 0 I 342
s mm10.chr7                   3674567 244 + 145441459 GGATGTGGGCATCACTAACCGTCGTAGGATGCACAGCAAGTAGATGATGCTGATGGCAAAGACGGAGCACAGGTAGGTGATGGCCAGGTTCGATCGGGGTGGGTAGAACCCATAGAATAGAGGGGACCACTCAAGGTAACCCTGGG-GAGGAAGAGGCAGAACAAAGGTCATAGTGGGGCCGGGTGGAGGTAACGATCAGGGAGCTGAGTGATCTGTGTGTG--------------------TGTCGTCCAGGAAACCAGGCTTC
i mm10.chr7                 I 2258 I 1
s canFam3.chr1               19633733 201 - 122678785 GGGTGCGGTTGTTACTTACCGATGGAGGATGAGCAGCAGATACAGGAGGCCAATGACAAAGACAGAGCACAGATAGGTGACTGCCAGGTGTGCGCGGGGTGGGTAGAACCCATAGAAGAGGGGAGACCATTCTAGAAAACCCTGCA-GAGGAA-AAGT----------TCACCGTGGGC------TTAGG-------------------CAATCAGAATCGGGGGGTA----CTGAGGCTCG-----------------------
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46844259  58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=12211.000000
s hg38.chr19_GL949751v2_alt    143248 9 +   1002683 CAGGTGGGC
s panTro4.chr19              59077623 9 +  63644993 CAGGTGGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55954005 9 +  60714840 CAGGCGGGC
i ponAbe2.chr19             C 0 I 1
s nomLeu3.chr10             102719875 9 - 106955855 CAGGTGGGC
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              60010639 9 +  64156825 CAGGTGGGC
i rheMac3.chr19             C 0 I 1
s papAnu2.chr19              47139548 9 +  51301725 CAGGTGGGC
i papAnu2.chr19             C 0 I 1
s mm10.chr7                   3674812 8 + 145441459 AAAGTAAG-
i mm10.chr7                 I 1 C 0
s canFam3.chr1               19633934 6 - 122678785 ---GTGGGG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45424047 342 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=827427.000000
s hg38.chr19_GL949751v2_alt    143257 298 +   1002683 GGGGAATCCCCCAGGGACCCAGGCACCTACCTCACCCGAGAGCAAGTTGAAGAGCTGGGTGGCAAAGGTGACCAGGCCCTGGGAGTGGGGGTTATAGGAGCCGCAGGGCGAGGAGATGTCGGGGCCGGGAGGGCCTGGGGGAGCGCCTCCCAACCAGGTGGGCAGCAGCGTCATGCAGGCCATGAGCACAGAGGCCAGCACGTTAAGAAGGAGCAGGAAGCGCAGCAGGGAGAAGTAGGACTCCGTGCCGGCGCCAAACTGGCCTGCAGGGGGCAGC----AGAGAGAGGCTCAGGTTCCTT
s panTro4.chr19              59077632 298 +  63644993 GGGGAATCCCCCAGGGACCCAGGCACCTACCTCTCCCGAGAGCAAGTTGAAGAGCTGGGTGGCAAAGGTGACCAGGCCCTGGGAGTGGGGGTTATAGAAGCCGCAGGGCGAGGAGATGTTGGGGCCGGGAGGGCCTGGGGGAGCGCCTCCCAACCAGGTGGGCAGCAGAGTCATGCAGGCCATGAGCACAGAGGCCAGCACGTTGAGAAGGAGCAGGAAGCGCAGCAGGGAGAAGTAGGACTCCGTGCCGGCGCCAAACTGGCCTGCAGGGGGCAGC----AGACAGAGGCTCAGGTTCCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55954015 298 +  60714840 GGGGAATCTCCCAGGGACCCAGGCACCTACCTCTCCCGAGAGCAAGTTGAAGAGCTGGGTGGCAAAGGTGACCAGGCCCTGGGAGTGGGGGTTATAGGAGCCGCAGGGCGAGGAGATGTTGGGGCCGGGAGGGCCTGGGGGAGCGCCTCCCAACCAGGTGGGCAGCAGCGTCATGCAGGCCATAAGCACAGAGGCCAGCACGTTGAGAAGGAGCAGGAAGCGCAGCAGGGAGAAGTAGGACTCCGTGCCGGCGCCAAACTGGCCTGCAGGGGGCAGC----AGAGAGAGGCTCAGGTTCCTT
i ponAbe2.chr19             I 1 C 0
s nomLeu3.chr10             102719885 298 - 106955855 GGGGAATCTCCCAGGGACCCAGGCACCTACTTCTCCCGACAGCAAGTTGAAGAGCTGGGTGGCAAAGGTGACCAGGCCCTGGGAGTGGGGGTTATAGGGGCCGCAGGGCGAGGAGATCTCGAGGCCGCGAGGGCCTGGGGGAGCGCCTCCCAACCAGGTGGGCAGCAGCGTCATGCAGGCCATAAGCACAAACGCCAGCACGTTGAGAAGGAGCAGGAAGCGCAGCAGGGAGAAGTAGGACTCCGTGCCGGCGCCAAACTGGCCTGCAGGGGGCAGC----AGAGAGAGGCTCAGGTTCTTT
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              60010649 302 +  64156825 GGGGAAACTCCCAGGGCCCCAGGCACCTACTTCTCCTGAGAGCAAGTTGAAGAGCTGGGTGGCAAAGGTGACCAGGCCCTGGGGGTGGGGGTTATAGGAGCCGCAGGGCGAGGAGGTGTTGGAGCCCGGAGGGCCTGGGGGAGCGCCTCCCAGCCAGGTGGGCAGCAGCGTCATGCAGGCCATAAGCACAGAGGCCAGCACGTTGAGGAGGAGTAGGAAGCGCAGCAGGGAGAAGTAGGACTCGGTGCCGGCGCCAAACTGGCCTGCAGGGGGCAGCAGAGAGAGAGAGGCTCAGTTTCCTT
i rheMac3.chr19             I 1 C 0
s papAnu2.chr19              47139558 298 +  51301725 GGGGAAACTCCCAGGGCCCCAGGCACCTACTTCTCCTGAGAGCAAGTTGAAGAGCTGGGTGGCAAAGGTGACCaggccctgggggtgggggttatAGGAGCCACAGGGCGAGGAGGTGTTGGAGCCGGGAGGGCCTGGGGGAGCGCCTCCCAGCCAGGTGGGCAGCAGCGTCATACAGGCCATAAGCACAGAGGCCAGCACGTTGAGGAGGAGCAGGAAGCGCAGCAGGGAGAAGTAGGACTCGGTGCCGGCGCCAAACTGGCCTGcagggggcagc----agagagaggCTCAGGTTCCTT
i papAnu2.chr19             I 1 C 0
s calJac3.chr22              45424389 298 +  49145316 GAGAAATCTCCCAGGGACCCAGGCACCTACTTCTCCCGAGAGCAAGTTGAAGAGCTGGGTGTCGAAGGAGACCAGGCCCTCGGAGTGGGGATTATAGAAGCCGCAGGGCGAGGAGGTGTTGAGGCCGGGAGGGCCTGGGGGAGCGCCTTCCAGCCAGGTGGGCAGCAGCGTCATGCAGGCCATGAGCACCGAGGCCAGCACGTTGAGGAGCAGCAGGAAGCGCAGCAGAGAGAAGTAGGACTCGGCGCCGGCGCCAAACTGACCTGCAGGGGGCAGC----AGAGAGAGGCTCAGGTTCCTT
i calJac3.chr22             I 342 C 0
s mm10.chr7                   3674820 296 + 145441459 -GAGGTTCCTCTGGGGACCATGGCACCCACCTCTCCAGAGAGCAAGTTGAAAAGCTGGGTGGGGAAGGCGACCAGGCCATGAGTGTGTGGAATATAGGAACCACAGGGTGAAGAGATGTTAGGGCCAGGGGGACCTGGAGGAGCCCCTTCCAGCCAGGTGGGGATCAGCTTCATGCAGATTTCAATGACAGATGCCACCAGGTTGAGAAAGAGCAGGAAGCGCAGCAGGGAGAAGTAGGACTCAGTGCCTGCTCCAAACTGACCTGCAGAGGGCAGC----AGAGAG-GCCTCAGGTCCCTT
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19633940 293 - 122678785 ---GGGTCTCCCAGGGCTCCAGGGACGCACCTCTCCTGACAGCAAGTTGAGGAGATGGGTGGGGAAGGTGACTAGGCCTTGGGGGCTGGGGTTGTAGAAGCCACAGGGCGAGGAGGTGTCAGAGCCAGGGGGACCCGGGAGGGTCCCTTCCAGCCAGGTGGGCAGCAGTGTCATACAGGCCTTAATTACAGACGCCAGCACGTTGAGAAGCAGCAGGAAACGCAGCAAGGAGAAGTAGGACTCGGTGCCGGCACCAAACTGGCCTACAGGGGGT-GC----AGAGAG-GCCTGGGGCTCCTG
i canFam3.chr1              C 0 I 8
e chlSab2.chr6               46844259  58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=30693.000000
s hg38.chr19_GL949751v2_alt    143555 20 +   1002683 CCCGGGAGCAGGACCAGCCC
s panTro4.chr19              59077930 20 +  63644993 CCCGGGAGCAGGACCAGCCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55954313 19 +  60714840 CCCGGGAGCA-GACCAGCCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720183 19 - 106955855 CCCGGGAGCA-GACCACCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60010951 20 +  64156825 CCCGGGAGCAGGACCAGCTC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47139856 20 +  51301725 CCCGGGAGCAGGGCCAGCTC
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45424687 20 +  49145316 TCTGGGAGCAGGACCAGCCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3675116 19 + 145441459 ACCAGT-GTAGTTCCAACCC
i mm10.chr7                 C 0 I 114
e canFam3.chr1               19634233  8 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=58091.000000
s hg38.chr19_GL949751v2_alt    143575 45 +   1002683 CTCCTACCCCTGGACT-GGGGTCCAGCCGCGCCTTCctttctttct
s panTro4.chr19              59077950 45 +  63644993 CTCCCACCCCTGGACT-GGGGTCCAGCCGCGCCTTTCTTTCTTTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55954332 45 +  60714840 CTCCCACCCCGGGACT-GGGGCCCAGCCGCGCctttctttctttct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720202 42 - 106955855 CTCCCACCCCGGGACT-GGGGCCCAGCCGCGCCtttcttttct---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60010971 46 +  64156825 CTCCCATCCCGGCACTGGGGGCCCAGCCGTGCCTTGCTTTCTTTCt
i rheMac3.chr19             C 0 I 34
s papAnu2.chr19              47139876 46 +  51301725 CTCCCATCCCGGCACTGGGGGCCCAGCCGTGCCttgctttctttct
i papAnu2.chr19             C 0 I 1
s calJac3.chr22              45424707 45 +  49145316 CTCC-ACCCCGGGACTCGGGGCCCAGGGGCGCCGCCtttttctttt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233  8 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=-131.000000
s hg38.chr19_GL949751v2_alt    143620 4 +   1002683 -ttct
s panTro4.chr19              59077995 4 +  63644993 -TTCt
i panTro4.chr19             C 0 I 52
s ponAbe2.chr19              55954377 4 +  60714840 -ttct
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47139923 3 +  51301725 -ttt-
i papAnu2.chr19             I 1 C 0
s calJac3.chr22              45424752 4 +  49145316 gttc-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233 8 - 122678785 I
e nomLeu3.chr10             102720244 0 - 106955855 C
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60011017 34 +  64156825 I

a score=910.000000
s hg38.chr19_GL949751v2_alt    143624 1 +   1002683 t
s ponAbe2.chr19              55954381 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720244 1 - 106955855 t
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47139926 1 +  51301725 t
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45424756 1 +  49145316 t
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233 8 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60011017 34 +  64156825 I
e panTro4.chr19              59077999 52 +  63644993 I

a score=2629.000000
s hg38.chr19_GL949751v2_alt    143625 31 +   1002683 ttctt--tcttttctttctttctttcttttctt-
s ponAbe2.chr19              55954382 22 +  60714840 t--------ctttctttctttctttc---tctt-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720245 28 - 106955855 ttctt--tcttttctttttttctttt---ttct-
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45424757 31 +  49145316 ttatttattttttatttatttattta---ttttt
i calJac3.chr22             C 0 I 1379
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233  8 - 122678785 I
e chlSab2.chr6               46844259 58 +  50890351 I
e papAnu2.chr19              47139927  0 +  51301725 C
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60011017 34 +  64156825 I
e panTro4.chr19              59077999 52 +  63644993 I

a score=16156.000000
s hg38.chr19_GL949751v2_alt    143656 201 +   1002683 tctttctttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttttctttctttctttctttctttcttcctttctttcttttctttccttccttccttccttccttccttccttccttccttccttccttccttccttcctttctttctctctctctctctctctatata
s ponAbe2.chr19              55954404 137 +  60714840 tctttcttttcttttctttctttctttctttctttctttctttctttctttctttttttctttctttc------------------------------------------tttctttccttccttccttccttccttccttccttacttccttccttccttccttccttcctttctttc----------------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720273 139 - 106955855 tttcttttttcttttcttttcttttcttttcttttcttttcttttcttttcctctcctctcccctttcgt----------------------------------------ttcctttcctttccttttctttttctTTCT----------------------Ctctctctctctctttctatatatatatatatacatata
i nomLeu3.chr10             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233   8 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259  58 +  50890351 I
e papAnu2.chr19              47139927   0 +  51301725 C
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60011017  34 +  64156825 I
e panTro4.chr19              59077999  52 +  63644993 I

a score=-3610.000000
s hg38.chr19_GL949751v2_alt    143857 33 +   1002683 tatatatatatatttttcttttcttttcttttc--
s ponAbe2.chr19              55954541 16 +  60714840 --------------tttctt---tttttttttt--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720412 13 - 106955855 tatatatatatat----------------------
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47139927 25 +  51301725 ----------tattattattattgttatttgttat
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233  8 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60011017 34 +  64156825 I
e panTro4.chr19              59077999 52 +  63644993 I

a score=2768.000000
s hg38.chr19_GL949751v2_alt    143890 8 +   1002683 tttttttt-
s panTro4.chr19              59078051 8 +  63644993 tttttttt-
i panTro4.chr19             I 52 C 0
s ponAbe2.chr19              55954557 8 +  60714840 tttttttt-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102720425 8 - 106955855 tttttttt-
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47139952 5 +  51301725 ----tatta
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233 8 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60011017 34 +  64156825 I

a score=203010.000000
s hg38.chr19_GL949751v2_alt    143898 166 +   1002683 tttttgagacggagtttcgctctgccgcccagcatggagtgcagtggcgcgatctcggctcactgcaacctccgcctcctgggttcaagcaattctcctgtctcagcctcacgagtagctgggattacaggcgtgcgccaccatgctcagctagtttttgtatttt
s panTro4.chr19              59078059 166 +  63644993 tttttgagacggagtttcgctctgccgcccagcatggagtgcagtggcgcgatctcggctcactgcaacctccgcctcctgggttcaagcaattctcctgtctcagcctcacgagtagctgggattacaggcatgcgccaccatgctcagctggtttttgtatttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55954565 166 +  60714840 tttttgaaacggaatctcgctctgccgcccagcatggagtgcagtggcgcgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgtctcagcctcgcgagtagctgggactacaggcgtgggccaccatgcccagctagtttttgtatttt
i ponAbe2.chr19             C 0 M 804
s nomLeu3.chr10             102720433 166 - 106955855 tttttgagacggagtttcgctctgctgcccagcatggagtgcagcggcatgatcttggctcactgcaacctccgccttctgggttcaagcaattttcctgtctcagcctcccaagtagctgggattacaggcgtgcgccaccatgctcagctagtttttgtatttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60011051 165 +  64156825 tttttgagacggagtctctctctgccgcccaggccggagtgcagtggcgtgatctcggctcactgcaaccttcgcctcccaggttcaagcaattcaccgatctcag-ctcccgagtagctgggattacaggcatgcgccaccatgctcagttagttttcgcatttt
i rheMac3.chr19             I 34 C 0
s papAnu2.chr19              47139957 162 +  51301725 tttttgagacggagtctcgctctgccgcccaggccggagtgcagtggcgcgatctcagctcactgcaaccttcgcctcctgggttcaagcaattctcctatctcagcctcccgagtagctgggattacaggcacgcgccaccatgctc----agtttttgtatttt
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233   8 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259  58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=92837.000000
s hg38.chr19_GL949751v2_alt    144064 130 +   1002683 tggtagagacgggggtttcaccatgttggtcaggctggtctcgaattcttgac-----------------ctcaggtgatccacccacctcggcctcccaaactgttgggattacaggcgtgagccaccgcgccaggcccagccgtg
s panTro4.chr19              59078225 130 +  63644993 tagtagagacgggggtttcaccatgttggtcaggctggtctcgaattcttgac-----------------ctcaggtgatccacccacctcggcctcccaaactgttgggattacaggcgtgagccaccgcgcccggcccagccgtg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102720599 130 - 106955855 tagtagagacgaggatttcaccatgttggtcaggctggtctcgaactcctgac-----------------ctcgggtgatccactcacctcggcctcccaaattgttgggattacaggtgtgagccaccgcgcccggcTCAGCGGTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60011216 124 +  64156825 tagtagagacg-gggtttcaccatattggtcaggctggcctcgaactcctgatnnnnnnnnnnnnnnnnn----------------------gcctcccaaactgttgggattacaggcgtgagccgccgcgcccggcccagccgtg
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47140119 129 +  51301725 tagtagagatg-gggtttcaccatattggtcaggctggcctcgaactcctgat-----------------ctccggtgatccacccacctaggcctcccaaactgttgggattacagacgtgagccgccgCGCGCGGCCCAGCCGTG
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3675135 114 + 145441459 I
e canFam3.chr1               19634233   8 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259  58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=44845.000000
s hg38.chr19_GL949751v2_alt    144194 54 +   1002683 cctttctcagaccc--aagagtccagacccccagcccctc----------------------------ctccctcagacccaaa
s panTro4.chr19              59078355 54 +  63644993 cctttctcagaccc--aagagtccagacccccagcccctc----------------------------ctccctcagacccaga
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102720729 54 - 106955855 CCTTTCTCAGACCC--AAGagtccagacccccagcccctc----------------------------ctccctcatacccaga
i nomLeu3.chr10             C 0 I 273
s rheMac3.chr19              60011340 82 +  64156825 cctttctcagaccc--aagagtccaggccctgagcccctcctccttcagacccagatcccagtcccttctccctcagatccagA
i rheMac3.chr19             C 0 I 56
s papAnu2.chr19              47140248 54 +  51301725 CCTTTCTCAGACCC--AAGAGTCCAGGCCCCGAGCCcgtc----------------------------ctccctcagacccaga
i papAnu2.chr19             C 0 I 64
s mm10.chr7                   3675249 53 + 145441459 CTTCTCTCTGATTCAGAAGGGTTCAGGCACTAG--TCTTC----------------------------ATCCTTCAGACCAGG-
i mm10.chr7                 I 114 C 0
e canFam3.chr1               19634233  8 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=2928.000000
s hg38.chr19_GL949751v2_alt    144248 8 +   1002683 aatccagg
s rheMac3.chr19              60011478 8 +  64156825 aatccagg
i rheMac3.chr19             I 56 C 0
s papAnu2.chr19              47140366 8 +  51301725 aatccagg
i papAnu2.chr19             I 64 C 0
s mm10.chr7                   3675302 8 + 145441459 GCTGCAGG
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19634233 8 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e nomLeu3.chr10             102720783 273 - 106955855 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e panTro4.chr19              59078409 0 +  63644993 C

a score=6146.000000
s hg38.chr19_GL949751v2_alt    144256 13 +   1002683 cccaagcc---cctcc
s nomLeu3.chr10             102721056 13 - 106955855 tcccagcc---cctcc
i nomLeu3.chr10             I 273 C 0
s rheMac3.chr19              60011486 13 +  64156825 cccaagcc---cctcc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47140374 13 +  51301725 cccaagcc---cctcc
i papAnu2.chr19             C 0 C 0
s mm10.chr7                   3675310 12 + 145441459 ----AACCAGACCTTT
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19634233  8 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259 58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e panTro4.chr19              59078409  0 +  63644993 C

a score=487538.000000
s hg38.chr19_GL949751v2_alt    144269 412 +   1002683 tccctcaaacccaggagtcc---gtccccagcccctcctccctcagacccaggag-------tccaggccctgccccCAGGACAC--CACCCAAACCCCACCGCACCCCCGATCCTCTTCAGTGTCCACGCCCAGGGCTGCAGGCTTCGCAAGCCTTCCTTTGTTTTCTCCTTGGACCTCCGAAGTAGCCGCGCCCATCGGTCCGTCTTAGTTCCAGAGCCATAGACCACCTGGTCCCTGCTGGCATTTCTTTGCCTGGGAGGGAAAC------AGG--------CAGAAAATGAGGGGTTTCGCagccccagactgggaaccatctgaatgtagacacaatccaacagtagaatggagaagtaaattgtggcc---tatacataagatagaatactctgtagcaataaaaaagaaACC-------Agct----gg-gt-----acagtggctcaggc
s panTro4.chr19              59078409 390 +  63644993 -------------------------tcccagcccctcctccctcagacccaggAG-------TCCAGGCCCTGCCCCCAGGACAC--CACCCAAACCCCACCGCACCCCCGATCCTCTTCAGTGTCCACGCCCAGGGCTGCAGGCTTCGCAAGCCTTCCTTTGTTTTCTCCTTGGACCTCCGAAGTAGCCGCGCCCATTGGTCCGTCTTAGTTCCAGAGCCATAGACCACCTGGTCCCTGCTGGCATTTCTTTGCCTGGGAGGGAAAC------AGG--------CAGAAAATGAGGGGTTTCGCagccccagactgggaaccatctgaatgtagacacaatccaacagtagaatggagaagtaaattgtggcc---tatacataagatagaatactctgtagcaataaaaaagaaACC-------Agct----gg-gt-----acagtggctcaggc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102721069 412 - 106955855 tccctcagacccaggagtct---gtccccagcccctcctccctcagacccaggag-------tccaggccctgccccCAGGACAC--CACCCGAACCCCACCGCACCCCCGATCCTCTTCAGTGTCCACGCCCAGGGCTGCAGGCTTCGAAAGCCTTCCTTTGTTTTCTCCTTGGATCTCCGAAGTAGCCGCACCCATTGGTCCGTCCTAGTTCTAGAGCCATAGACCACCTGGTCCCTGCTGGCATTTCTTTGCCTGGGAGGGAAAC------AGG--------CAGAAAATGAGGGGTTTCGCagccccagactgggaaccatctgaatgtagaaacaacccaacagtagaatggagaagtaaattgtagcc---tatacataagatagaatactctgtagcaataaaaaataaacC-------ggct----gg-gt-----acagtggctcaatc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60011499 413 +  64156825 cccctcagacccagaagtct---gtccccagcccctcctccctcagacccaggag-------tccaggccctgccccCAGCACAT--CACCCGAACCCCACCGCACCCCCGATCCTCTTCAGTGTCCATGACCAGGGCTGCAGGCTTTGCAAGCCTTCCTTTGTTTTCTCCTTGGACCTCCGAAGTAGCCGCGCCCATTGGTCCGTCCTAGTTCCAGAGCCATAGATCACCTGGTCC---CTGGCATTTCTTTGCCTGGGAGGGAAAG------AGG--------CAGAAAATGAGGGGTTTTGCagccccagactgggaaccatccgaatgtagaaacaacccaaaagtagaacggagaagtaaattgtggcc---tatacataagatagaatactctgtggcaataaaaaagaaACC-------AGTTggccgg-gc-----gcggtggctcacgc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47140387 409 +  51301725 tccctcagacccagaagtct---gtccccagcccctcctccctcagacccaggag-------tccaggccctgcCCCCAGGACAT--CACCCGAACCCCACCGTACCCCCGATCCTCTTCAGTGTCCATGACCAGGGCTGCAGGCTTTGCAAGCcttcctttgttttctccttGGACCTCCGAAGTAGCCGCGCCCATTGGTCCGTCCTAGTTCCAGAGCCATAGATCACCTGGTCC---CTGGCATTTCTTTGCCTGGGAGGGAAAG------AGG--------CAGAAGATGAGGGGTTTTGCAGCCCCAGACTGGGAACCATCCGAatgtagaaacaacccaaaagcAGAACGGAGAAGTAAATTGTGGCC---TATACATAAGATGGAATACTCTgtggcaataaaaaagaaacc-------agtt----ga-gt-----gcggtggctcacgc
i papAnu2.chr19             C 0 C 0
s mm10.chr7                   3675322 438 + 145441459 TCCCAAAGGCCCAGGGGATA---ATTGCCACTCCCCTCTCTGTCAGACCCAGGAAACCACACTCCAGCCTCAGACCCCAGGCCTCTTCCTCTAAAGCCCAGCACACCCCCAATTTTCTTCAGCGTCCATGCCCAGGGCTGTATAGTTTGAAAGCCTTCTTTCATTTTTCCCTTGGTCCGGGAAAGCTGTCGGGTCCAGTAGGCAGCCCTGGATTCAGAGCCAGAAGCCAGCTGCCCT---GTAGCCTGGCTCTTCCTAGAAAGAGAGC------AGAGTCAGCGTCAGAAAATGAAGGGTTTGGAACctacaaactgggaaccacccaaagacagaaacaacacga---tgtaacgaggacaggcatcgtggtactgtatccataaactggaatactctttagcaattaaaaaggaaCCAAATCTGagct----gg-gtggtgggggggggggcacac
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19634241 401 - 122678785 TCCCTCAGACCTGGGAGTCCTGATTCCCCAGCCCCTCCTCCCTCAGACCCAGGAA-------T----------------GGGGCC--AGCCTCAACCCCACCGCACCCCCAATTCTCTTCAGTGTCCACGCCCAGGGTTGCAAGGTGTGCAGGCCTTCCTTCGTCTTCTCCTTCATCCTCCGGAACTTCAGGGCGCAATTTGAGGCTCTGGAACCCGATCCCTGAGCCACTTGGTCC---CTGGTATGGCTCTTCCTGGTAGGGAAACATTCAGAGA--------CAGAATAGGAAGGACCTGGCAGCTCCC-AGTGGACACC-CCCAAGTGGAGAAACAACACAACAGCAGGAGCGGGAAGTAAATTGCAATA---TATCGATAACTCGGAATCCTCTACAGCAATAGGAAGAGACAC-------AGCT----AATGC-----ATAGAAGGCCAGGC
i canFam3.chr1              I 8 I 1202
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259  58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=159092.000000
s hg38.chr19_GL949751v2_alt    144681 186 +   1002683 ctgtaatcccagcactttgggaggccgaggtgggtgaatcacctgaggtcag---------------gagttcgagaccagcctgaccaacatggtgaaatcctgtctct----actaaaaataccaaaaaaaaaaaaaaa------------------------------------------------t----tagctgggcctggtgg------------cgggtgcctgtaatcccagctacacgagaggctgaggcaggaaaatt
s panTro4.chr19              59078799 187 +  63644993 ctgtaatcccagcactttgggaggccgaggtgggtgaatcacctgaggtcag---------------gagttcgagaccagcctgaccaacatggtgaaatcctgtctct----actaaaaataccaaaaaaaaaaaaaaa-----------------------------------------------at----tagctgggcctggtgg------------cgggtgcctgtaatcccagctacacgagaggctgaggcaggaaaatt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102721481 234 - 106955855 ctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcag---------------gagttcgagaccagcctgaccaaaatggtgaaatcctgtctct----actaaaaataccaaaaaaaaaaaaaaaaaaacaaaaaaaaagctgggcctggtggcgggtgcctgtaatcccaaaa----aagctgggcctggtgg------------cgggtgcctgtaatcccagctacacgggaggctgaggcaagagaatc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60011912 177 +  64156825 ctgtaatccgagcactttcggaggccaaggtgggcggatcatctgaggccag---------------gggttcgagaccagcctgaccaacatggtgaaatcctccctc-------------tacaaaaaaaaaaaaaaat------------------------------------------------g----taactgggcctggtgg------------tggtcgcctgtaatcccagctactggggaggctgaggcaggaggatc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47140796 190 +  51301725 ctgtaatcccagcactttgggaggccaaggtgggtggatcatctgaggtcag---------------gggttcgagaccagcctgaccaacatggtgaaatcctgcctct----actaaaaatacaaaaaaaaaaaaaaat------------------------------------------------atatttagctgggcctggtgg------------tgggcgcctgtaatcccagctactggggaggctgaggcaggagaatc
i papAnu2.chr19             C 0 C 0
s mm10.chr7                   3675760 233 + 145441459 ctttaatcccagcac-ttgggaggcagatgcaggtggatt-tctgaggccagcctggtctacagactgagttccaatacagccagagctacacagaaaaaccctgtctcgaaaaaccaaaaAAAAAAAAAAAAAAAAAAAGGAGCCAGACATAAAATAATGAT--------------------------G----GAGCCATGTCTAGTAGTATATgcatgcttgtatgcttgtaatcccaac----agtgaggttgaggcagtggaatt
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19634642 1202 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e chlSab2.chr6               46844259  58 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=2100.000000
s hg38.chr19_GL949751v2_alt    144867 1 +   1002683 g
s panTro4.chr19              59078986 1 +  63644993 g
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102721715 1 - 106955855 g
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60012089 1 +  64156825 g
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47140986 1 +  51301725 g
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844317 1 +  50890351 g
i chlSab2.chr6              I 58 C 0
s mm10.chr7                   3675993 1 + 145441459 g
i mm10.chr7                 C 0 I 558
e canFam3.chr1               19634642 1202 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=309972.000000
s hg38.chr19_GL949751v2_alt    144868 279 +   1002683 cttgaacctgggaggtggaggttgcagtgagctgagatggcgccattgcattccagcctgggtgacggagtgagattccaagaaaggaaagaaagaaagaaaagaaagaaacctaatgctaggcagaagaagccagcacaaaagactgaagactgtatgattctatttgcacaacgttgcagagcac--agcttgcaaagctctacagaaaAGcaggaggctggagtgggaggatcgcttgagcccaggtgtcggaggctgcagtgagctgagactgcacc
s panTro4.chr19              59078987 279 +  63644993 cttgaacctgggaggcggaggttgcagtgagctgagatggcgccattgcattccagcctgggtgacggagtgagattccaagaaaggaaagaaagaaagaaaagaaagaaacctaatgctaggcagaagaagccagcacaaaagactgaagactgtatgattctatttgcacaaagttgcagagcac--agcttgcaaagctctacagaaaAGcaggaggctggagtaggaggatcgcttgagcctaggtgtcggaggctgcagtgagctgagactgcacc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102721716 266 - 106955855 cttgaacctgggaggcggaggttgcagtgagctgagatggcgccattgcactccagcctgggtgacagagtgagattcc-------------aaggaagaaaagaaagaaaCCtaatgctaggcagaagatgccagcacaaaagactgaagactgtatgattctatttgcataaagttgcagagcac--agctagcaaagctctacagaaaAGcaggaggctggggtgggagaatcgcttgagcccaggtgtcggaggctgcagtgagctgagatcgcacc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60012090 278 +  64156825 cttgaacctgggagacagaggttgcagtgagctgagatggcaccattgcgctccagcctgggtgacagaatgagattccttctcagaaa---aaagaaagaaagaaggaaaCCTAATGTCAGGCAGAAGAAAACAGCAGAGAAGACTGAAGCCTGCATGATTCTATTTGTACAAAGTTGCAGAGCACAGAGCTGGCAAAGCTACACAGAAAAGcgggaggctggagtgggagaatcgcttgagcccaggtgtcggaggctgcagtgagctgagatcacacc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47140987 262 +  51301725 cttgaacctgggagacagaggttgcagtgagctgagattgcaccactgccctccagcctgggtgacagaatgagattccttctcag-aa---aaagaaagaaagaaggaaacctaatgccaggcagaag-aaacagcacaG-AGACTGAAGCCTGCATGATTCTATTTGTACAAAGTTGCAGAACACAGAGCTGGC-------------AAAGCAGGAGGCTGGagttggagaatcgcttgagcccaggtgtcagaggctgcagtgagctgagatcacacc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844318 278 +  50890351 cttgaacctgggagacagaggttgcagtgagctaagatggcaccattgcactccagcctgggtgacagaatgagattccttctcagaaa---aaagaaagaaagaaggaaGCCTAATGCTAGGCAGAAGAAAACAGCACAGAAGACTGAAGCCTGCATGATTCTATTTGTACAAAGTTGCAGAGCACAGAGCTGGCAAAGCTACACAGAAAAGcgggaggctggagtgggagaatcgcttgagcccaggtgttggaggctgcagtgagctgagatcacaca
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e ponAbe2.chr19              55954731 804 +  60714840 M
e calJac3.chr22              45424788 1379 +  49145316 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=46599.000000
s hg38.chr19_GL949751v2_alt    145147 23 +   1002683 actgcactccagcctgggcatca
s panTro4.chr19              59079266 23 +  63644993 actgcactccagcctgggcatca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55955535 23 +  60714840 actgcactccagcctgggcatca
i ponAbe2.chr19             M 804 C 0
s nomLeu3.chr10             102721982 23 - 106955855 actgcactccagcctgggcatca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60012368 23 +  64156825 actgcactccagcctgggcatca
i rheMac3.chr19             C 0 I 319
s papAnu2.chr19              47141249 23 +  51301725 actgcactccagcctgggcatca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844596 23 +  50890351 actgcactccagcctgggcatca
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=8024.000000
s hg38.chr19_GL949751v2_alt    145170 17 +   1002683 gagcaagactctgtcaa
s panTro4.chr19              59079289 17 +  63644993 gagtaagactctgtcaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55955558 17 +  60714840 gagcaagactctgccaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102722005  4 - 106955855 gagc-------------
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47141272 17 +  51301725 cagcgagactctgtctc
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46844619 17 +  50890351 cagcgagactctgtctc
i chlSab2.chr6              C 0 I 1
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60012391 319 +  64156825 I

a score=32557.000000
s hg38.chr19_GL949751v2_alt    145187 29 +   1002683 aaaaaaaaaaaaaaa--------GGTTAGGGAGAAGA
s panTro4.chr19              59079306 32 +  63644993 aaaaaaaaaaaaaaa-----aaaGGTTAGGGAGAAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55955575 37 +  60714840 aaaaaaaaaaaaaaaaaaaaaaaGGTTAGGGAGAAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102722009 19 - 106955855 ----------aaaaA--------GGTTAGGGAGAAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60012710 28 +  64156825 AAAAAAAAAAAAAAA--------GGTT-GGGGGAGAA
i rheMac3.chr19             I 319 C 0
s papAnu2.chr19              47141290 28 +  51301725 aaaaaaaaaaaaaaa--------ggtt-gggggagAA
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46844637 28 +  50890351 aaaaaaaaaaaaaaa--------GGTT-GGGGGAGAA
i chlSab2.chr6              I 1 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45424788 1379 +  49145316 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=611756.000000
s hg38.chr19_GL949751v2_alt    145216 318 +   1002683 GGTTACCTTGTATTTGTGAGGAAAAAGGGGGTGTCAGGGGAGGGACGCACAGGGTGCTGTCATGCCGTGTCACTTGCCCTAGCTGGAGTTTATCTGGGCTCTCACTTTATGAATAcagccatccctcagtatccat-gggggttggttcaaggactccccaagaatactgaaatctgtagatgcccaaattccttatataaaacggtatagtatttgcatacaggctacacacatcctcctgt-gtTTGTTTTATT-TTATTTTAAttt-----ttatctgattttt-acagacaaatgtctcgttttgttgtccaggctggagtgc
s panTro4.chr19              59079338 322 +  63644993 GGTTACCTTGTATTTGTGAGGAAAAAGGGGGTGTCAGGGGAGGGACGCACAGGGTGCTGTCATGCCGTGTCGCTTGCCCTAGCTGGAGTTTATCTGGGCTCTCACTTTATGGATAcagccgtccctcagtatccat-gggggttggttcaaggactccccaagaatactgaaatctgtagatgcccaaattccttatataaaatggta-agtatttgcgtacaggctatacacatcctcctgt-gtttgttttatt-ttattttattttattttTTATCTGAttttt-atagacaagtgtctcgttttgttgtccaggctggagtgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55955612 309 +  60714840 GGTTACCTTGTACTTGTGAGGAAAAAGCGGGTGTCAGGGGAGGGACACACAGGGTGCTGTCATGCTGTGTCGCTTGCCCTAGCTGGAGTTTATCTGGGCTCTCACTTTATGAATAcagccgtccctcagtatccat-gggggttggttcaaggactccccaagaatactgaaatatgtagatgcccaaatttcttatataaaacggtatagtatttgcatacaggctacacacatcctcctgt-Gtttattttatt-ttat-------------ttatctgattttt-atagac-agtgtctcattttgttgtccaggctggagtgc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102722028 312 - 106955855 GGTTACCTTGTCCTTGTGAGGAGAAAGGGGGTGTCAGGGGAGGGACACACAGGGTGCTGTCATGCTGTGTCGCTTGCCCTAGCTGCAGTTTATCTGGGCTCTCACTTTATGAATAcagccgtccctcagtatccat-gggggttggttcaaggactccctaagaatactgaaatctgtagatgcccaaattccttatataaaacggtacactatatgcatacaggctacacacatcctcctgt-gtttattttaTT-TTAATTT----------TTATCTGATTTTT-ATAGAC-AGTGTCTCGTTTTGTTGTCCAGACTGGTATGC
i nomLeu3.chr10             C 0 M 1089
s rheMac3.chr19              60012738 318 +  64156825 GGTTACCATCTCCTCGTGAGGAGAAAGGGGGTGTCAGGGGAGGGACGCACAGGGTGCTGTCATGCTGTGTCGCTTGCCCTAGCTGGAGTTTATCTGGGCTCTCACTTTATAAATAcagtcgtccctcagtatccat-gggagttggttcaaggactccccaaggataccgaaatctgta-atatccaaattctgtatataaaatggcatagtatttgcatacaggctacacatactcttctgtggttttttaaatt-ttattttatttt-----ttatctgatttttcagagac-agcgtctcgttttgttgtccaggctggagtgc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47141318 318 +  51301725 GGTTACCATCTCCTCGTGAGGAGAAAGGGGGTGTCAGGGGAGGGACGCACAGGGTGCTGTCATGCTGTGTCGcttgccctggctggagtttATCTGGGCTCTCACTTTATAAATACAGtcgtccctcagtatccat-gggggttGGTTCAAGGACTCCCCAAGGATACCGAAATCTGTA-ATGCCCaaattctgtatataaaatggcatagtatttgcatacaaGCTACACATATCCTTCTgtggtgttttaaatt-ttattttatttt-----ttatctgatttttcAGAGAC-AGCGTCttgttttgttgtccaggctggagtgc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844665 318 +  50890351 GGTTACAATCTCCTCGTGAGGAGAAAGGGGGTATCAGGGGAGGGACGCACAGGGTGCTGTCATGCTGTATCGCTTGCCCTAGCTGGAGTTTATCTGGGCTTTCACTTTATAAATAcagttgtccctcagtatccat-gggggttggttcaaggactccccaaggatactgaaatctgta-atatccaaattctgtatataaaatggcatagtatttgcatacaggctacacatatccttctgtggttttttccatt-ttattttatttt-----ttatctgatttttcagagac-agcgtctcgttttggtgtccaggctggagtgc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45426167 300 +  49145316 GGTTACCTTGTCCTTGTGAGGAT-GAGGGGACATCAGAGGATGGGCATGCAAGGTGCTGTCACGCCGTGT--CCTGCCCTAGCTGGAGTTTACCTGGGTTCTCATTTTATGAATGcacttgtacctcattatccatggggggttagttcacgatctccc-aagaatactgaaatctgta-atgcccaaattccttatgtaaaacagtacagtattggcatctgcaatacacacatcctcctgt-atTATTACCATTATTAT-------------TAGTAgtattttttaaagac-agggtttcatgatgttggtcaggct-------
i calJac3.chr22             I 1379 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=154766.000000
s hg38.chr19_GL949751v2_alt    145534 110 +   1002683 ggtggtgcaatcatagctcaatgcagcctcaaacttccaggctcaagcaattctcccgcctcagcctcccaaagcgctggggctacaggtatgggccacgacacccagcc
s panTro4.chr19              59079660 110 +  63644993 agtggtgcaatcatagctcaatgcagcctcaaacttccaggctcaagcaattctcccgcctcagcctcccaaagcgctggggctacaggtatgggccactacacccagcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55955921 110 +  60714840 agtggtgcaatcatagctcaatgcagcctcaaacttccaggctcaagcaattctcccgcctcagcctcccaaagcgctggggctacaggtatgggccactacactcagcc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60013056 110 +  64156825 agtggtgcagtcgtagctcaatgcagcctcaaatttctgggctccagcaattctcctgcctcagtctcccaaagtgctggggctacaggtgtgggccactacacccagag
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47141636 110 +  51301725 agtggtgcagtcatagctcaatgcagcctcaaatttccaggctccagcaattctcccgcctcagtctcccaaagtgctggggctacaggtgtgggccactacaCCCAGCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46844983 110 +  50890351 agtggtgcaatcatagctcaatgcagcctcaaatttccaggctccagcaattctcccgcctcagtctccccaagtgctggggctacaggtgtgggcccctacacccagcg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45426467  85 +  49145316 ---------------gct---------cttgagctctagacctcaggtgatccacccgccttggcct-ctaaagggcttggattacaggcgtgagccaccacgcccggtc
i calJac3.chr22             C 0 I 949
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=131476.000000
s hg38.chr19_GL949751v2_alt    145644 111 +   1002683 ctccaatgcactttaaatcacctctagattacttataacacccggtacaaggtaaatgttatatagatagctgttcttttaacttgtattatttTTTGTCATATTGTTACT
s panTro4.chr19              59079770 111 +  63644993 ctccaatgcactttaaatcacctctagattacttataacaccttgtacaaggtaaatgttatatagatagctgttcttttaacttgtattatttTTTGTCATATTGTTACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55956031 111 +  60714840 ctccaatgcactttaaatcatctctagattacttataacaccttgtacaaggtaaacattatatagatagctgttcttttaacttgtattatttTTTGTCATATTGTTACT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60013166 108 +  64156825 ctccaatgcactttcaatcacctctagattacttacaatacctcatacaagat-aatgttatatagatagctgttCTTTTAatttgtat--ttttttgtcatattgttact
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47141746 108 +  51301725 CTCCAATGCACTTTcaatcacctctagattacttacaatacctcaTACAAGAT-AATGTTATATAGATAGCtgttcttttaatttgtat--ttttttgtcatattgttact
i papAnu2.chr19             C 0 I 328
s chlSab2.chr6               46845093 109 +  50890351 ctccagtgcactttcaatcacctctagattacttacaatacctcatacaagataaatgttagatagatagctgttCTTTTAATTTGTAT--ttttttgtcatattgttact
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45426552 949 +  49145316 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=90.000000
s hg38.chr19_GL949751v2_alt    145755 1 +   1002683 T
s panTro4.chr19              59079881 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55956142 1 +  60714840 G
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60013274 1 +  64156825 t
i rheMac3.chr19             C 0 C 0
s chlSab2.chr6               46845202 1 +  50890351 t
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45426552 949 +  49145316 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e papAnu2.chr19              47141854 328 +  51301725 I
e macFas5.chr19              55029692 9250 +  59248254 I

a score=1365.000000
s hg38.chr19_GL949751v2_alt    145756 1 +   1002683 T
s panTro4.chr19              59079882 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55956143 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60013275 1 +  64156825 t
i rheMac3.chr19             C 0 I 486
s papAnu2.chr19              47142182 1 +  51301725 t
i papAnu2.chr19             I 328 C 0
s chlSab2.chr6               46845203 1 +  50890351 t
i chlSab2.chr6              C 0 I 489
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45426552 949 +  49145316 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=57492.000000
s hg38.chr19_GL949751v2_alt    145757 119 +   1002683 GATTATTACTTTTAAAAAATagagatgggggtctcgctatgttactcaggccgcagtatagtggctatattcacaggcatgatcccactactgatcggcgtgggagtgttgaTACATTG
s panTro4.chr19              59079883 119 +  63644993 GATTATTACTTTTAAAAAATagagatgggggtctcgctatgttactcaggctgcagtatagtggctatattcacaggcatgaacccgctactgatcagcatgggagtgttgaTACATTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55956144 119 +  60714840 GATTATTACTTTTAAAAAATagagatgggggtcttgctatgttgctcaggctgcagtatagtggctatattcgcaggcatgatcccgctactgatcggcacgggagtgttgaTATATTG
i ponAbe2.chr19             C 0 M 1290
s papAnu2.chr19              47142183 118 +  51301725 gattattacttttaaaagatacagat-ggggtctcgatatgttgctcaggctggagtatagtggctatATTCACAGGCACGATCCCGCCACTGATCAGCAGGGGAGTGGTGatatattg
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e calJac3.chr22              45426552 949 +  49145316 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e chlSab2.chr6               46845204 489 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60013276 486 +  64156825 I

a score=7143.000000
s hg38.chr19_GL949751v2_alt    145876 120 +   1002683 TTATTTTTTATTGTTTTTT-Ccatatatatacacatatatataca--------------tatatatgtgtatatatatacacacatatgcatatatatacgcatatatgcgtatatatatacgcgtatatacgcg
s panTro4.chr19              59080002 135 +  63644993 TTATTTTTTATTGTTTTTTTCcatatgtatacacatatatatacacacatatatatgtatatatatgtgtgtgtatatacacatatatgtgtatatatacgtatatatgcatatatatacacgtatatatgtgtg
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47142301  37 +  51301725 ttgttttttattgtttttt-ccatatatatac---------------------------tatata----------------------------------------------------------------------
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e ponAbe2.chr19              55956263 1290 +  60714840 M
e calJac3.chr22              45426552 949 +  49145316 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e chlSab2.chr6               46845204 489 +  50890351 I
e macFas5.chr19              55029692 9250 +  59248254 I
e rheMac3.chr19              60013276 486 +  64156825 I

a score=7816.000000
s hg38.chr19_GL949751v2_alt    145996 10 +   1002683 tatatatata
s panTro4.chr19              59080137 10 +  63644993 tatatatata
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60013762 10 +  64156825 TATAtttata
i rheMac3.chr19             I 486 C 0
s papAnu2.chr19              47142338 10 +  51301725 tatatttata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46845693 10 +  50890351 tatatttata
i chlSab2.chr6              I 489 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e ponAbe2.chr19              55956263 1290 +  60714840 M
e calJac3.chr22              45426552 949 +  49145316 I
e nomLeu3.chr10             102722340 1089 - 106955855 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=337548.000000
s hg38.chr19_GL949751v2_alt    146006 290 +   1002683 tttgagatggagtcccgctctatcacccaggccggagtccaatggcacgatcttggctcactgcaacctctatctccctggttcaagcgattctcctgcttcagcctcccgagtagctgggattacaggcacccgccaccacacccagctaatg--tttgtatttttagtagagttggggttttgccatgttggccaggctggtcttgaactcctgaccacaggtgatccactcgcctgggcctcccaaagtgctgggattacaggtgtgagccactgcAATGGGCCCAtaa
s panTro4.chr19              59080147 290 +  63644993 tttgagatggagtcccgctctatcacccaggccggagtgcaatggcacgatcttggttcactgcaacctctatctccctggttcaagcgattctcctgcttcagcctcccgagtagctgggattacaggcacccgccaccacacccagctaatg--tttgtatttttagtagagttggggtttcgccatgttggccaggctggtctcgacctcctgaccacaggtgatccactcgcctgggcctcccaaagtgctgggattacaggtgtgagccactgcaacgggccCAtaa
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60013772 290 +  64156825 tttgagatggagtcccgctctatcacccaggctggagtgcaatggcacgatattggctcactgcaacctgcatctctgtggttcaagcaattctcctgcctcagcctaccgagtagctgggattacaggcacatgccaccacacccagctaatt--tttgtatttttagtagagttggggtttcgccatgttggccaggctggtctcgaactcctgacctcaggtgatccactcgcctcggcctcctaaagtgctgggattacaggtgtgagccaccgcgccgggccCACaa
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47142348 290 +  51301725 tttgagatggagtcccgctctatcacccaggctggagtgcaatggcacgatattggctcactgcaacctgtatcTCTgtggttaaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacatgccaccacacccagctaatt--tttgtatttttagtagagttggggtttcgccatgttggccaggctggtctcgaactcctgacctcaggtgatccactcgcctcggcctcctaaagtgctgggattacaggtgtgagccactgcgccgggcccaCAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46845703 290 +  50890351 tttgagatggagtcccgctctatcacccaggctggagtgcaatggcacgatctcggctcactgtgacctgtatgtccgtggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcacatgctaccacatgcagctaatt--tttgtatttttagtagagttggggtttcgccatgttcgccaggctggtctcgaactcctgacctcaggtgatccattcgcctcggcctcctaaagtgctgggattacaggtgtgagccaccgcgctgggccCACaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45427501 292 +  49145316 ttagagacagagtctaattttgttgcctaggctggagtgcaatggagcaatctctgctcactgtgacctccgcctcccaggttcaagggattctccttcctcagcctcccgagtagctgggactacaggtgtgcgccaccacacccggctaatttatttgtatttttagcagagaaggagtttcaccatgttagccaggatgggctcgagctcctgagctcaggtgatccacttgccttgccctcccaaagtgctaacattgcaggcaggagccaccgcgccaggccCATAA
i calJac3.chr22             I 949 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e canFam3.chr1               19634642 1202 - 122678785 I
e ponAbe2.chr19              55956263 1290 +  60714840 M
e nomLeu3.chr10             102722340 1089 - 106955855 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=216340.000000
s hg38.chr19_GL949751v2_alt    146296 199 +   1002683 tcatttttgaaggagggcacctgcattttcattgttcaccaggccctgcaaattatgcagTGAGAATGGGAAAAGAAAGAAGTTAAAGAGAGGGAGGCTTGGAAGAGGAGGCAAAGATGAAGGAAGGTATAAAGCAGAGAGAAATAAATATTA-ACAGATTTTGgacacacacacagagagaaactgag--gcagagacagG
s panTro4.chr19              59080437 199 +  63644993 tcatttttgaaggagggcacctgcattttcattgttcaccaggccctgcaaattatgcagTGAGAATGGGAAAAGAAAGAAGTTAAAGAGAGGGAGGCTTGGAAGAGGAGGCAAAGATGAAGGAAGGTATAAAGCAGAGAGAAATAAATATTA-ACAGATTTTGGACACACACACACAGAGAAACTGAG--GCAGAGACAGG
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60014062 193 +  64156825 tcatttttgaaggagggcacctgcattttcattgttcaccaggccctgcgaattatACCGTGAGAATGGGAAAAGAAAGAAGTTAAAGAGAGGGAGGCTTTGAAGAGGAGGCAAAGATGAAGGAAGACGTAAAGCAGAG------AAATATTA-ACAGATTTTGG--ACACACACAGAGAAAAACTGAGAGGCAGAGACAGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47142638 197 +  51301725 TCATTTTTGAAGGAGGGCACCTGCATTTTCATTGTTCACCAGGCCCTGCGAATTATACCGTGagaatgggaaaagaaagaagttaaagtGAGGGAGGCTTTGAAGAGGAGGCAAAGATGAAGGAAGACATAAagcagagagaaataaatatta-acagattttgg----acacacagagaaaaactgagaggcagagacagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46845993 199 +  50890351 tcatttttgaaggagggcacctgcattttcattgttcaccgggccctgcgaattatACCGTGAGAATGGGAAAAGAAAGAAGTTAAAGAGAGGGAGGCTTTGAAGAGGAGGCAAAGATGAAGGAAGACATAAAGCAGAGAGAAATAAATATTA-ACAGATTTTGG--ACACATGCAGAGAAAAACTGAGAAGCAGAGACAGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45427793 173 +  49145316 TCATTTTTGAATGAGGACACCTGCATTCTCATTGTTCACCAGGTGCTGCAAAGCAGGCAGTGGG--------------------AAAGAGAGAGCGGCTTTGAAGAAGTGGGGAAGGTGAAGG----CATAAAGCAGAGACAAATAAATA--A-GCAGATTTCAG--ACATGCACAGGGAGAAACTGAGAAGCAGAGGCAGG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19635844 158 - 122678785 TCAGTCTTGCCGGAGCTGTCCAGAATGTTCGTTGTTCAGCA-GCCGTGCACATCTTGT----AGCCCGGGAAGGGAAAGAAG--GAAGAGGGACAAACTTCGGAAAACA---------GAAGG-----CCACAACAG--------AAACACTACACAGATTCCAG------GCACAGGGAGAAG--GAG--CCAGAG-----
i canFam3.chr1              I 1202 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e ponAbe2.chr19              55956263 1290 +  60714840 M
e nomLeu3.chr10             102722340 1089 - 106955855 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=399714.000000
s hg38.chr19_GL949751v2_alt    146495 242 +   1002683 ATTGGTGGAGACCAGGGAGACGG----CAAATCCCAGAGA----GAAGAGA-CCCCAGAGCCA-----TCGAAAGGCAGCACTCACCTGGAGTC--CGAAGTAGAGACAAAGATGAGGGGAAGAAAGAAACCAAGAGAGGCAGCTCTGAGCGGGGCAGAGAGAGGCCCCAGAAGCCAGGAGCGGCAGAGGACAGAGGGAGGAGACCGAGTCCAGGGTATGGGAGAAGGGCCCGGTCCGGGCTGTGCGGGTCCCAGCTG
s panTro4.chr19              59080636 242 +  63644993 ATTGGTGGAGACCAGGGAGATGG----CAAATCCCAGAGA----GAAGAGA-CCCCAGAGCCA-----CCGAAAGGCAGCACTCACCTGGAGTC--CGAAGTAGAGACAAAGATGAGGGGAAGAAAGAAACCAAGAGAGGCAGCTCTGAGCGGGGCAGAGAGAGGCCCCAGAAGCCAGGAGCGGCAGAGGACAGAGGGAGGAGACCGAGTCCAAGGTATGGGAGAAGGGCCCGGTCCGGGCTGTGCGGGTCCCAGCGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102723443 242 - 106955855 ATTGGTGGAGACCAGGGAGACGG----CAAATCCCAGAGA----GAAGGGA-CCCCAGAGCCA-----CCGAAAGGCAGCACTCACCTGGAGTC--CGAAGTAGAGACAAAGATGAGGAGAAAAAAGAAACCAAGAGAGGCAGCTCTGAGCGGGGCAGAGAGAGGCCCCAGAAGCCAGGAGCAGCAGAGGACAGAGGGAGGAGACTGTGTCCAAGGTATGGGAGAAGGGCCCAGTCCGGGCTGTGCGGGTCCCAGCTG
i nomLeu3.chr10             M 1089 C 0
s rheMac3.chr19              60014255 244 +  64156825 ATTGGAGGAGACCAGGGAGATGG----CGAATCCCAGAGACAGGGAAGAGA-TCCCGGAGCCA-----CGGAAAGGCAGCACTCACCTGGAGTC--CGAAGGAGAGACAAAGAC--GGGAAAAAAAGAAACCAAGAGAGGCAGCTCTGAGTGAGGCAGAGAGAGGCCCCAGCAGCCAGGAGCGGCAGAGGACAGAGGGAGGAGACCGCGTCCAAGGTATGGGAGAAGCGCCTGGTCCAGGCTGTGCGGGTCCCAGCCG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47142835 246 +  51301725 attgGAGGAGACCAGGGGGACGG----CGAATcccagagacagagaagaga-tcCCGGAGCCA-----CGGAAAGGCAGCACTCACCTGGAGTC--CGAAGGAGAGACAAAGacgaggggaaaaaagaaaccaagagagGCAGCTCTGAGCGAGGCAGAGAGAGGCCCCAGCAGCCAGGAGCGGCAGAGGACAGACGGAGGAGACCGCGTCCAAGGTATGGGAGAAGGGCCCGGTCCAGGCTGTGCGGGTCCCAGCCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46846192 245 +  50890351 ATTGGAGGAGACCAGGGAGACGG----CGAATCCCAGAGACAGCGAAGAGA-TCCCAGAGCCA-----CGGAAAGGCAGCACTCACCTGGAGTC--CGAAGGAGAGACAAAGAC-AGGGGAAAAAAGAAACCAAGAGAGGCAGCTCTGAGCGAAGCAGAGAGAGGCCCCAGAAGCCAGAAGCGGCAGAGGACAGAGGGAGGAGACCTCGTCCAAGGTATGGGAGAAGGGCCCGGTCCAGGCTGTGCAGGTCCCAGCCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45427966 241 +  49145316 ACTGGA-GAGACATGGGTGACAG----TGAATCCCAGAGA----GAGAGGA-CCCCAGAGTCA-----CCGAAAGGAAGTACTCATTCGGAATC--TGAAGCAGAGACAAAGATGAGGGGAAGAAAGAAACCAAGAGGGGCAGCTCTGTCCGGGGCAGACAGAGGCCCCAGAAACCAGGAGCCGCAGAGAACAGAGGGAAGAGACAGGGTCCGAGGTGTGGGAGAAGCGCACAACCTGGGCTGGATGGGTCCCAGCGG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19636002 166 - 122678785 ------------CAGAGAGCCAGCACACGAACCCGGGCGA----CAGGAGAGTTCTGGAGCCAGGAGCCAGGGAGGCAGGAGGC-CTgggagtcagagaagcagagacacaggcacagggaaagaagg---caagagaagca-----gggagaggctgagggagg-----------------aggagaggACACACGCTGG--------------------------------------------------CAAGCCG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3675994 558 + 145441459 I
e ponAbe2.chr19              55956263 1290 +  60714840 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=329303.000000
s hg38.chr19_GL949751v2_alt    146737 126 +   1002683 GAGGTGGGGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCTGTCTGGGTGACTTCTGTGAAGGCCTTTctgctccttcctccat---cc
s panTro4.chr19              59080878 126 +  63644993 GAGGTGGAGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCCGTCTGGGTGACTTCTGTGAAGGCCTTTCTGCTCCTTCCTCCAT---CC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102723685 126 - 106955855 GAGGTGGGGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCTGTCTGGGTGACTTCTGTGAAGGCCTTTctgctccttcctccat---cc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60014499 126 +  64156825 GAGGTGGGGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCCGCCTGGGTGACTTCGGTGAAGGCCTTTCTGCTCCTTCCTCCAG---CC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47143081 129 +  51301725 TAGGTGGGGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCCGTCTGGGTGACTTCTGTGAAGGCCTTTCTGctccttcctccagcctcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46846437 129 +  50890351 GAGGTGGGGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCCGTCTGGGTGACTTCTGTGAAGGCTTTTctgctccttcctccagcctcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45428207 126 +  49145316 GAGGTGGCGCCTCACCTGTGTGCCCGTCTGGCCTGCATGGGCCAGGGCAGTTCCCGGGAAGGGTGAGGGTCCTGCAGCTCTGTCTGGGTGGCTTCTGCAAAGGCCTGCCTGCTCCTTCCTCCAT---CC
i calJac3.chr22             C 0 M 1419
s mm10.chr7                   3676552 113 + 145441459 GAGGTG----CTCACCTGTGTGCCCGCCTTGCCTGCATAGGCCAGGGAAGTTCCCGGGAAGGGTGAG---------ATTCCATTTGTGCAGTTTCTGCAAAGGCCTGAAGGCTCCTTCCTCCTT---CA
i mm10.chr7                 I 558 C 0
s canFam3.chr1               19636168 125 - 122678785 -GAGCGGAGCCTCACCTGTGTGTCCGGCGGGCCTGCATGGGCCATGGCAGCTCCCGGGAGGGGACGGGCTCCTCCAGCTCCTGCTGGGCGGCTTCTGCCATGGTCTGGAGTCTCCTCTCTCCAT---CT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55956263 1290 +  60714840 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=272175.000000
s hg38.chr19_GL949751v2_alt    146863 127 +   1002683 tcctcctcctcct---ccAGCGCCCCCCAAGGCAGCACCCCAGGGTCTCGGTACCGAAGGGTGGCAGCACTGGGCAGCTCGTTCAGCACAGAAGACAGCGATGGGCCTGGGGAGGA-GCAG--GGGGCTGGGA
s panTro4.chr19              59081004 127 +  63644993 TCCTCCTCCTCCT---CCAGCGCCCCCCAAGGCAGCACCCCAGGGCCTCGGTACCGAAGGGTGGCAGCACTGGGCAGCTCGTTCAGCACAGAGGACAGCGATGGGCCTGGGGAGGG-GCAG--GGGGCTGGGA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102723811 130 - 106955855 tcctcctcctcctccgccAGCGCCCCCCAAGGCAGCACCCCAGGGCCTCGGTACCGAAGGGTGGCAGCACTCGGCAGCTCGTTCAGCACAGAGGACAGCGATGGGCCTGGGGAGGG-GCAG--GGGGCTGGGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60014625 127 +  64156825 TCCTCCTCCTCCT---CCGGCACCCCCCAAGGCAGCACCCCAGGGCCTCGGTACCGAAGGGTGGCAGCACTGGGCAGCTCGTTCAGCACAGAGGATAGCGATGGGCCTGGGGAGGG-GCAG--GGGGCTGGGA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47143210 127 +  51301725 tcctcctcctcct---ccggcACCCCCCAAGGCAGCACCCCAGGGCCTCGGTACCGAAGGGTGGCAGCACTGGGCAGCTCGTTCAGCACAGAGGACAGCGAtgggcctggggaggg-gcag--ggggctGGGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46846566 127 +  50890351 tcctcctcctcct---ccGGCACCCCCCAAGGCAGCACCCCAGGGCCTCGGTACCGAAGGGTGGCAGCACTGGGCAGCTCGTTCAGCACAGAGGTCAGCGATGGGCCTGGGGAGGG-GCAG--GGGGCTGGGA
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3676665 127 + 145441459 TCATCATCTTCAT---CCAGTGTTCCCCAAGGGAGCACACCAGGGCCGCGGTATCGCAGCGTAGCAGCGCTGGGGAGATCGTTCAGCACAGACGCCAGCGATGGGCCTGGGATGAACACAA--AGGATTGAA-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636293 129 - 122678785 TCTTCCTCCTCCT---CCGATGCCCCCCACGGAAGAACCCCAGGGCCCCGGTACCGAAGGGTTGCAGCACTGGGGAGCTCATTCAGCACAGAGGAGAGCGATGGGCCTGGGGTGGA-AAAGAAGGGGCTGGGA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55956263 1290 +  60714840 M
e calJac3.chr22              45428333 1419 +  49145316 M
e macFas5.chr19              55029692 9250 +  59248254 I

a score=112897.000000
s hg38.chr19_GL949751v2_alt    146990 63 +   1002683 ----------------------------agacccgggagtctggg-ccctaattcctcctccctcaga-ccaggaaaccagg-tccccggcccc
s panTro4.chr19              59081131 63 +  63644993 ----------------------------agacccgggagtctggg-cccaaattcctcctccctcaga-ccaggaaaccagg-cccccggcccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102723941 56 - 106955855 ----------------------------agacctgggagtctggg-cccaaattcctcctccctcaga-ccaggaaaccagg-cccc-------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60014752 62 +  64156825 ----------------------------agacccgggagtctggg-cccaaattcctcctccctcaga-ccaggaaaccagg-cctcag-tccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55038942 65 +  59248254 ----------------------------agacccaggagtccaggcccccagcccctcctccctcagacccaggagtccagacccccag-cccc
i macFas5.chr19             I 9250 C 0
s papAnu2.chr19              47143337 63 +  51301725 ----------------------------AGACCTGGGAGTCTGGG-CCCAaattcctcctccctcaga-ctaGGAAACCAGG-CCTcagtcccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46846693 63 +  50890351 ----------------------------AGACCCGGGAGTCTGGG-cccaaattcctcctccctcaga-ccaggaaaccagg-cctcagtcccc
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3676792 58 + 145441459 ----------------------------AGACAGAGGAGTCCAGG-CCACAAGCCTTTC-CCCTCAGA-TCCACAGTCCAGG-CCACAGC----
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636422 89 - 122678785 GGGCGCGGGAGTCCCAGCCTCCTCCCTCAGACC-AGGAGCCCAGG-CCCCTGCTCCTCCTCCCTCAGA-CCAGGAGCCCAGG-CCCCTGCTCC-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55956263 1290 +  60714840 M
e calJac3.chr22              45428333 1419 +  49145316 M

a score=117337.000000
s hg38.chr19_GL949751v2_alt    147053 52 +   1002683 tcctccctcagacccaggagtccaggcccccggc----tcctcctccctcagaccc
s panTro4.chr19              59081194 52 +  63644993 tcctccctcagacccaggagtctaggcccccgac----ccctcctccctcagaccc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60014814 51 +  64156825 tcctccctcagacccaggagtccaggcctccag-----ccctcctccctcagaccc
i rheMac3.chr19             C 0 I 637
s macFas5.chr19              55039007 52 +  59248254 tcctccctcagacccaggagtccagacccccagc----ccctcctccctcagaccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47143400 55 +  51301725 tcctccctcagacccaggagtccaggcc-ccagcccttccctcttccctcagaccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46846756 52 +  50890351 tcctccctcagacccaggagtccaggcccccggc----ccctcctccctcggaccc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45429752 51 +  49145316 tcctccctcaga-ccagaaaaccaggccccaggc----ccctcctccctcggaccc
i calJac3.chr22             M 1419 C 0
s mm10.chr7                   3676850 50 + 145441459 CCATCTCTCAGACACAAGGGTGCAGGGTTCAGGC------CACCTCCCTCAGACCC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636511 49 - 122678785 TCCTCCCTCAGA-CCAGGAGTCCAGGCC-CCTGC----TCCTCCTCCCTCAGACC-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55956263 1290 +  60714840 M
e nomLeu3.chr10             102723997  0 - 106955855 C

a score=89712.000000
s hg38.chr19_GL949751v2_alt    147105 42 +   1002683 aggagtccaggcccccggctcctcctccctcagacccaggag
s panTro4.chr19              59081246 42 +  63644993 agaagtccaggctctcggcccctcctccctcagacccagcag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102723997 27 - 106955855 ---------------cggcccctcctccctcagacccaggag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55039059 41 +  59248254 aggagtccagg-ccccggcccctcctccctcagacccaggag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47143455 41 +  51301725 aggagtccaga-ccccagcccctcctccctcagacccaggag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46846808 42 +  50890351 aggagtccaggcccccggcccctcctccctcggacccaggag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45429803 41 +  49145316 aggagtccagg-ccccagcccctcctctctcggacccaggag
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3676900 38 + 145441459 -TGGAGCCAGG-CCCCAG--ACTCTTTTTTCAGACCCAGGAG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636560 41 - 122678785 AGGACTCCAGG-CCCCTGCTCCTCCTCCCTCAGACCCAGGAG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55956263 1290 +  60714840 M
e rheMac3.chr19              60014865 637 +  64156825 I

a score=14022.000000
s hg38.chr19_GL949751v2_alt    147147 15 +   1002683 tccaggcccccggct
s panTro4.chr19              59081288 15 +  63644993 aacaggcccccggcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102724024 15 - 106955855 tccaggcccccggcc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55039100 15 +  59248254 tccagatccccagac
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46846850 15 +  50890351 tccaggcccccggcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45429844 14 +  49145316 tccaggccccagcc-
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3676938 12 + 145441459 CCCATGCCCCAA---
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636601 14 - 122678785 TCCAGGCCCCTGCT-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55956263 1290 +  60714840 M
e papAnu2.chr19              47143496  0 +  51301725 C
e rheMac3.chr19              60014865 637 +  64156825 I

a score=73582.000000
s hg38.chr19_GL949751v2_alt    147162 28 +   1002683 cctcctccctcagacccaggagaacagg
s panTro4.chr19              59081303 28 +  63644993 cctcctccctcagacccagaagtccagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55957553 27 +  60714840 cctcctccctcaga-ccaggaaaccagg
i ponAbe2.chr19             M 1290 C 0
s nomLeu3.chr10             102724039 28 - 106955855 cctcctccctcagacccaggagtccagg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55039115 28 +  59248254 cctcctccctcagacccaggagtccagg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46846865 28 +  50890351 cctcctccctcggacccaggagtccagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45429858 28 +  49145316 cctcctccctcggacccaggagtccaga
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3676950 25 + 145441459 ---CCTTCTTCAGATACAGGGGTCTAGG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636615 28 - 122678785 CCTCCTCCCTCAGACCCAGGAGCCCAGG
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47143496  0 +  51301725 C
e rheMac3.chr19              60014865 637 +  64156825 I

a score=40086.000000
s hg38.chr19_GL949751v2_alt    147190 14 +   1002683 cccccggcccctcc
s panTro4.chr19              59081331 14 +  63644993 ctctcggcccctcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55957580 14 +  60714840 ccccagagccctcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102724067 14 - 106955855 cccccggcccctcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60015502 14 +  64156825 cccccggcccctcc
i rheMac3.chr19             I 637 C 0
s macFas5.chr19              55039143 14 +  59248254 cccccagcccctcc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46846893 14 +  50890351 cccccggcccctcc
i chlSab2.chr6              C 0 I 1683
s calJac3.chr22              45429886 14 +  49145316 cccccggcccctcc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3676975 12 + 145441459 -CCCCAGCCCATT-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636643 13 - 122678785 -CCCCTGCTCCTCC
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47143496  0 +  51301725 C

a score=414808.000000
s hg38.chr19_GL949751v2_alt    147204 151 +   1002683 tccctcagacccaggagaacaggcccccggcccctcctccctcagacccaggagtccaggcccccgg-ctcctcctccctcagacccaggagaacaggcccccggcccctcctccctcagacccaggagtccaggcccccggctcctcctcc
s panTro4.chr19              59081345 151 +  63644993 tccctgagacccagcagaacaggcccccggcccctcctccctcagacccagaagtccaggctctcgg-cccctcctccctcagacccagcagaacaggcccccggcccctcctccctcagacccaggagtccaggcccccggcccctcctcc
i panTro4.chr19             C 0 I 478
s ponAbe2.chr19              55957594 150 +  60714840 tccctcagacccaggagtccaggcccccggcccctcctccctcagacccaggagtccaggcccccgg-cccctcctccctcagacccaggagtccaggccctcagctcctcctccctcagacccaggagtccagg-ccccagcccctccacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102724081 151 - 106955855 tccctcagacccatgagtccaggcccccggcccctcctccctcagacccaggagtccaggcccccggccccctcctccctcagacccaggagtccaggctcccggcccctcctccctcaga-ccaggaaaccaggttcccggcccctcctcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60015516 150 +  64156825 tccctcagacccaggagtccaggcccccggcccctcctccctcagacccaggagtccaggcccccgg-cccctcctccctcagacccaggagtccagt-ccccggcccctcctccctcagacccgggagtccaggtacccagcccctcctcc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55039157 150 +  59248254 tccctcagacccaggagtccaggcccccagcccctcctccctcagacccaggagtccagatccccag-accctcctccctcagacccaggagtccagg-ccccggcccctcctccctcagacccgggagtccaggtacccagctcctcctcc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46848590 151 +  50890351 tccctcggccccaggagtccaggcccccggcccctcctccctcggacccaggagtccaggcccccgg-cccctcctccctcggacccaggagtccaggcccccggcccctcctccctcggacccaggagtccaggcccccggctcctcctcc
i chlSab2.chr6              I 1683 C 0
s calJac3.chr22              45429900 146 +  49145316 tccctcagacccaggagttcagg--gacagcccctcctcccccagccccaggagtccagacccccgg-cccctcctccctcagacccaggagttcagg--cacagcccctcctccctgggacccaggagtccagg-ccccaggccctcctcc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3676987 106 + 145441459 TCTCTCAGACCCAGGGGTACAGGCCTAAAGCCA--CCCCCCTCAGACCCAGGAGTTCAGA--CTCGG-GTTCTC--CCCTCAGATCCAGGGCTATAGA--------------------------------------TCCCATTATTTCTCC-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636656 144 - 122678785 TCCCTCAGA-CCAGGAGTCCAGGCCCCCAGCCCCTC--CCCTCAGACGCAGGAGTCCAGGCCCCTG--CTCCTCCTCCCTCAGACCCAGGAGTCCAGG-CCCCTGCTCCTCCTCCCTCAGA-CCAGGAGTCCAGG-CCCCTGCTCCTCCTCC
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47143496   0 +  51301725 C

a score=31645.000000
s hg38.chr19_GL949751v2_alt    147355 14 +   1002683 ctcagacataggaa
s panTro4.chr19              59081974 14 +  63644993 ctcagacataggaa
i panTro4.chr19             I 478 C 0
s ponAbe2.chr19              55957744 14 +  60714840 ctcagacataggaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102724232 14 - 106955855 ctcagacccagtag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60015666 14 +  64156825 ctcagagccaggag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55039307 14 +  59248254 ctcagacccgggag
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46848741 14 +  50890351 cttggacccaggag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45430046 14 +  49145316 ctcagacccaggag
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3677093 12 + 145441459 TTCACACTGGGG--
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19636800 14 - 122678785 CTCAGACCCAGGAG
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47143496  0 +  51301725 C

a score=35449.000000
s hg38.chr19_GL949751v2_alt    147369 15 +   1002683 tccaggcacccagcc
s panTro4.chr19              59081988 15 +  63644993 tccaggcacccagcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55957758 15 +  60714840 tccaggcacgcagcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102724246 14 - 106955855 tccagac-cccagcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60015680 15 +  64156825 tccaggtacccagct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55039321 15 +  59248254 tccaggtacccagct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47143496 14 +  51301725 tccaggc-ctcagcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46848755 14 +  50890351 tccaggc-cccggcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45430060 13 +  49145316 ttcagg--cacagcc
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19636814 15 - 122678785 CTCAGGCCCCCAGCC
i canFam3.chr1              C 0 I 878
e mm10.chr7                   3677105  0 + 145441459 C

a score=6465713.000000
s hg38.chr19_GL949751v2_alt    147384 1864 +   1002683 cctcctccctcaga-ccaggaaaccaggttcccagcccctcctccctcaggcccaggagtccgggtgccagcctctacttcccctggacccaggggtccacagccctcaactccatccccAAG-----------------CGTGGAACCCTCCTACTCCAGGGCAGTGGAGTCCAGGCTTCAACTTCCTTTTCCCTCTAGCTCAGGAGTGTGGGAACCCAGCCTCTCCTATTCCCAAGACACCCAAACTCCCA-------------------------------------GCCCTTAGCCCTCCCCTCC----TCCCAGACTAGCCTGGTTCTCCAGGCTCCTCCTCCTCAGACCCTGGAGTTCCAGCCTCCAGTTCCCTTCTCCCCCATAATATCAGGAAGTGGAACCTTCTCTCTTTAGCCCTC-AGACTCAGGAGGCCAGGCCTCCCCTTTCCTCCTCCAGCAGGACTCCCACCTAGCCTGAAGGTCGGATGGATCTGAGCTTCTCCTGGCATTC---CCTACCTCCTCTGGCCTCCCGGGGGGCCAGCCACCCCCTAGAGGAGCCCCAGGCTTCTGATTCCAAGGTCGGGTTTT-CTTCCATGGCCC-AGGCTGGGCT------GTCTCTAGTGGCCA-CCAGGCAGACACTGCCCCAGGTA----AGGGAGGGGCCAGGGGCAGGTGTGTACCTGGCCAGCAGGTGGCCCGG---AGGGAGTAAGGTACA---CTTCCTGTGGTTTCTCAGGGCCGCTGATGCGAAAGGTCTCCTGGGAGCTGAAGTCCCCGTGGTGCCCCG---GGCCTGACAGTTTGGTTCCTGG--GCTGGGCGGGGGGG---CTGTACCTCACCCT------------------------GGGACTTGGTGGA-CTAAGTCCTTCCCACCGTTTATCA-CC--CAGATACCTGCACGGACAGGATGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACACGGTGA-CCTGTCATAGGCCAAGCGATGAGAAGAGGGCGCCAGGAGCGCTGGG-GTCCCGAGGTGGCTCAGATGGAAGCCAT----GGGACGGCCGTCCCCAGGCCCGCGCACccgcacctcagtttcccctttgtgaaatgggaaGCTTATGCTTCCTTCCAAGTCTGCAATATTGGTGCGATGAGCTAAAAGTGGAGCGAAAGACACAAGGAAGAGG-------CTTCCCACTCCCAGGACCTGCCCCCAAGCT--CCGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGCCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGTGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCAGTGA---CTCTTGTCTGGA---CAATACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGCCTCTGGGC---------------AGAGGG------CAGGGAGGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGGGTATTT--AGCTGGGGAAGAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGGG--GAGGAGAC------------------------------AGCAGCCTGGTTCACAGAATTCCCGGG------------------A-----CCAGCTGGCAGAGGGAGCGTCGTGAC---AGCTTACTCCTCCCGGAGCTTCTCTGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCTAAAGCCAGCCCCAGCCCCAGGGCTGCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGGGTGTCGGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCGCGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGCGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTCCT-GAGGAGG-
s panTro4.chr19              59082003 1866 +  63644993 cctcctccctcaga-ccaggaaaccaggttcccagcccctcctccctcaggcccaggagtccgggtgccagcctctacttcccctggacccaggggtccacagccctcaactccgtccccAAG-----------------CGTGGAACCCTCCTACTCCAGGGCAGTGGAGTCCAGGCTTCAACTTCCTTTTCCCTCTAGCTCAGGAGTGTGGGAACCCAGCCTCTCCTATTCCCAAGACACCCAAACTCCCA-------------------------------------GCCCTTGGCCCTCCCCTCC----TCCCAGACTAGCCTGGTTCTCCAGGCTCCTCCTCCTCAGACCCTGGAGTTCCAGCCTCCAGTTCCCTTCTCCCCCATAATATCAGGAAGTGGAACCTTCTCTCTTTAGCCCTC-AGACTCAGGAGGCCAGGCCTCCCCTTTCCTCCTCCAGCAGGACTGCCACCTAGCCTGAAGGTCGGATGGATCTGAGCTTCTCCTGGCAT-C---CCTACCTCCTCTGGCCTCCTGGGGGGCCAGCCACCCCCTAGAGGAGCCCCAGGCTTCTGATTCCAAGGTTGGGTTTT-CTTCCATGGCCCCAGGCTGGGCT------GTCTCTAGTGGCCA-CCAGGCAGACACTGCCCCAGGTA----AGGGAGGGGCCAGGG-CAGGTGTGTACCTGGCCAGCAGGTGGCCCGG---AGGGAGTAAGGTACA---CTTCCTGTGGTTTCTCAGGGCCGCTGATGCGAAAGGTCTCCTGGGAGCTGAAGTCCCCGTGGTGCCCCG---GGCCTGACAGTTTGGTTCCTGG--GCTGGGCGGGGGGGGGGCTGTACCTCACCCT------------------------GGGACTTGGTGGA-CTAAGTCCTTCCCACCGTTTATCA-CC--CAGATACCTGCACGGACACAATGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACACGGTGA-CCTGTCATAGGCCAAGCGATGAGAAGAGGGCGCCAGGAGCGCTGGG-GCCCCGAGGTGGCTCAGATGGAAGCCAT----GGGACGGCCGTCCCCAGGCCCGCGCAtctgcacctcagtttcccctttgtgaaatgggaagcttatgcttccttccaagtctgcaatatcggtgcaatgagctaaaagtggagcgAAAGACACAAGGAAGAGG-------CTTCCCATTCCCAGGACCTGCCCCCAAGCT--CCGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGCCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGTGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCAGTGA---CTCTTGTCTGGA---CAATACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGCCTCTGGGC---------------AGAGGG------CAGGGAGGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGGGTATTT--AGCTGGGGAAGAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGCG--GAGGAGAC------------------------------AGCAGCCTGGTTCACAGAATTCCCGGG------------------A-----CCAGCTGGCAGAGGGAGCGTCGTGAC---AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCTAAAGCCAGCCCCAGCCCCAGGGCTGCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGTGTGTCTGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCACGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGCGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTCCT-GAGGAGG-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55957773 1905 +  60714840 cctcctccctcaga-ccaggaaaccaggttcccagcccctcctccctcaggcccaggagtcccggtgccagcctctacttcccctggacccaggggtccacagccctcgactccgtccccAAG-----------------CGTGGAACCCTCCTACTCCAGGGCAGTGGAGTCCAGGCTTCAACTTCCTTTTCCCTCTAGCTCAGGAGTGTGGGAACTCAGCCTCTCCTATTCCCCAGACACCCAAACTCCCAGCCCTTAGCCCTCCCCTCCTCCCAGACTAAACTCCCAGCCCTTAGCCCTCCCCTCC----TCCCAGACTAGCCTGGTTCTCCAGGCCCCTCCTCCTCAGACCCTGGAGTTCCAGCCTCCAGTTCCCTTCTCCCCCATAATATCAGGAAGTGGAACCTTCTCTCTTTAGCCCTG-AGACTCAGGAGGCCGGGCCTCCCCTTTCCTCCTCCAGCAGGACTCCCACCTAGCTTGAAGATCGGATGGATCTGAGCTTCTCCTGACAT-C---CTTACCTCCTCTGGCCTCCCGGGGGGCCAGCCACCCCCTAGGGGAGCCCCAGGCTTCTGATTCCAAGGTCGGGTTTT-CTTCCATGGCCCCAGGCAGGGCT------GTCTCTAGTGGCTA-CCAGGCGGACACTGCCCCAGGTA----AGGGAGGGGCCGGGG-CAGGTGTGTACCTGGCCGACAGGTGGCCCGG---AGGGAGTAAGGTACG---CTTCCTGTGGTTTCTCAGGGCCTCTGATGCGAAAGGTCTCCTGGGAGCTGAAGTCCCCGTGCTGCCCTG---GGCCTAACAGTTTGGCTCCTGG--GCTGAGCGGGGCAGGGGCTGTACCTCACCCT------------------------GGGACTTCGTGGGCCTAAGTCCTTCCCGCCGTTTATCCTCC--CAGATACCTGCACGGACACGCCGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACATGGTGA-CCTGTCACAGGCCGAGCAATGAAAAGAGGGTGCCAGGAGCGCTGGG-GCCCCGAGGTGGCTCAGATGGAAGCCAT----GGGACAGCCGTCCCCAGGCCTGCGCATTCGCACCTCAGTTTCCCCTTTGTGAAATGGGAAGCTTATGCTTCCTTCCAAGTCTGCAATATTGGTGCGATGAGCTAAAAGTGGAGTGAAAGACACAAGGAAGAGG-------CTTCCCACTCCCAGGACCTGCCCCCAAGCT--CCAACCCCACATTGTGGATGCAAAGAAAGGGGATTTGCCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGTGCTCGCTGGATACCCAGAAGCTGGAGCAGGGGCCAGTGA---CTCTTGTCTGGA---CAATACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGCCCCTGGGC---------------AGAGGG------CAGGGAGGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGGGTATTT--AGCTGGGGAAGAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGGG--GAGGAGAC------------------------------AGCAACCTGGTTCACAGAATTCCCAGG------------------A-----CCAGCTGGCAGAGGGGGCGTCGTGAC---AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCTAAAGCCAGCCCCAGCCCCAGGGCTGCCAGAGCTAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGTGTGTCAGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCGCGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGTCTTCTGGCCCCCTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCTCTCAGCAGCCAGGCACAGCGGGATCGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCATGCCAGTAGGCGCTCAGCAGCATGGTCCAGGTGCTCCT-GAGGAGG-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102724260 1860 - 106955855 cctcctccctcagacccaggagtccaggcccctggcccctcctccctcaggcccaggagtctgggtgccagcctctacttcccctggacccaggG--TCACAGCCCTCGACTCTGTCCCCAAG-----------------CGTGGAACC--TCTACTCCAGGGCAGTGGAGT-CAGGCTTCAACTTCCTTTTCCCTCTAGCTCAGGAGTGTGGGAACCCAGCCTCTCCTATTCCCGAGACACCCAAACTCCCA-------------------------------------GCCCTTAGCCCTCCCCTCC----TCCCAGACTAGCCTGGTTCTCCAGGCTCCTCCTCCTGAGACCCTGGAGTTCCAGCCTGCAGTTCCCTTCTCCCCCATAATATCAGGAAGTGGAACCTTCTCTCTTCAGGCCTC-AGACTCAGGAGGCCAGGCCTCCCCTTTCCTCCTCCAGCAGGACTCCCACCTAGCCTGAAGGTCGGATGGATCTGAGCTTCTCCTGGCAT-C---CCTACCTCCTCTGGCCTCCTGGCGGGCCAGCCACCCCCTAGAGGAGCCCCAGGCTTCTGATTCCAAGGTCGGGTTTT-CTTCCATGGCCCCAGGCTGGGCT------GTCTCTAGTGGCCA-CCAGGCAGACACTGCCTCAGGTA----AGGGAGGGGCCGGGGACAGGTGTGTACCTGGCCAGCAGGTGGCCCGG---AGGGAGTAAGGTACA---CTTCCTGTGGTTTCTCAGGGCCGCTGATGCGAAAGGTCTCCTGGGAGCTGAAGTCCCCGTGGTGCCC-G---GGCCTGACCGTTTGGTTCCTGG--GCTGGGCTGGGGAG---CTGTACCTCACCCT------------------------GGGACTTCGTGGC-CTAAGTCCTTCCCGCCGTTTATCA-CC--CAGATACCTGCACAGACACGATGCCTTTGTGCAACACTTTATTGGGAAGGATTTACACATGGTGA-CCTGTCATAGGCCAAGCGATGAGAAGAGGGTGCCAGGAGCGTTGGG-GCCCCGAGGTGGCTCAGGTGGAAGCCAT----AGGACGGCCGTCCCCAGGCCCGCGCATCCGCACCT--GTTTCCCCTTTGTGAAATGGGAAGCTTATGCTTCCTTCCAAGTCTGCAATATCGTTGTGATGAGCTAAAAGTGGAGCGAAAACCACAAGGAAGAGG-------CTTCCCACTCCCAGGACCTGCCCCCAAGCT--CCGACCCCACATTGTGGATGCAGAGAAAGGGAA-TTGCCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGTGCTCTGTGGATAGCCAGAAGCTGGAGCAGTCGCCAGTGA-GGCTCTTGTCTGGA---CAATACTTTGATTTTGCAGGAGTGGA---------G---GT-------GGCCCCTGGGC---------------AGAAGG------CAGGGAGGACACCCCCGGGTCTGCTGC-AGTTGAAGGCAGGGTATTTAGAGCTGGGGAAGAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGGG--GAGGAGAC------------------------------AGCAGCCTGGTTCACAGAATTCCCGGG------------------A-----CTAGCTGGCAGAGGGAGCATCGTGAC---AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCCAAAGCCAGCCCCAGCCCCAGGGCTGCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGTGTGTCAGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCACGCATCTTCAGGAACCAGTGCAGCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGTCCCCGCAGGGCTGACTCCAGGCGGCCCTCAGCAGCCAGGCACAGCGGGATGGTCAGGAAGCTCAGGTAGTAGCCTGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTCCT-GGGGAGG-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60015695 1842 +  64156825 cctcctcccttgga-ccaggaaaccaggtccccagcccctcctccctcaggcccaggagtcggggtgccagtctctactttccctggacccaggggcccacagtcctcaactccatccccAGG-----------------CGCGGACCCCTCCTACTCCAGGGCAGAGGAGTCCAGTCCTCAACTTTCTTTTCCTTCTAGCTCAGAAGTGTGGGAACCCAGCCTCTCCTATTCCCAAGACACCCAAACTCCCA-------------------------------------GCCCTTAGCCATCCCCTCC----TTCCAGACTAGCCTGGTTCTCTAGGCTTCTCCTCCTCAGACC------------CCTTCAGTTCCTTTGTCCCCCATAATATCAGGAAGTGGAACCT--TCTCTTCAGCCCTC-AGACTCAGCAGGCCAGGCCTCCCCTT---TCCTCCAGCAGGACTCCCACCTAGCCTGAAGGTCGGATGGATCTGAGCTTCTCCTGGCAT-C---CCTACCTCCTCTGGCCTCCCGGGGGGCCAGCCACCCCCTGGAGGAGCCCCAGGCTTCTGATTCCAAGGTTGGGTTTT-CTTCCATGGCCCCAGGCTGGGCT------GTTTCTAGTGGCCA-CCAGGCAAACACTGCCCCAGGTA----AGGGAGGGGCCCGGGGCAGGTGTGTACCTGGCCAGTAGGTGGCCCGG---AGGGAGTAAGGTACA---CTTCCTGTAGTTTCTCAGGGCCGCTGATGCGAAAGGTGTCCTGGGAACTGAAGTCCCTCTGGTGCCCCA---GGCCTGACAGTTTGGTTCCTGG--GCTGGGCAG--------CTGTACCTCACCCC-------------------------GGACTTTGTGGC-CTAAGTCCTTCCTGCCGTTTATCA-CC--CAGATACCTGCACAGACACAATGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACGTGGTGA-CCTGTCATAGGCCAAGGGATGAGAAGAGGGTGCCAGGAGCGTTGGG-GCCCCGAGGTGGCTCAGATGGAAGCCAT----GGGACGGCCGTCCCCAGGCCCGCGCAtctgcacctcagtttcccctttgtgaaatgggaaacttatgcttccttccaagtctgcaatatcggtgccatgagctaaaagtggagcgAAAGACACAAGGAAGAAG-------CTTCCCATTCCCAGGACCTGCCCCCAAGCT--CTGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGTCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGCGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCCACGA-GACTCTTGTCCGGA---CAAAACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGTCCCTGGGC---------------GGAGGG------CAGGGAGGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGAGTATTT--AGCTGGGGAAAAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGGG--GAGGAGAC------------------------------AGCGGCCTGGTTCACAGAATTCCCGGG------------------A-----CCAGCTGGCAGAGGGAGCGTCACGG----AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCCAAAGCCAGCCCCAGCCCCAGGGCTGCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGCGTGTCGGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCGCGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGAGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTCCT-GAGGAGG-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55039336 1842 +  59248254 cctcctccctcgga-ccaggaaaccaggtccccagcccctcctccctcaggcccaggagtcggggtgccagtctctactttccctggatccaggggcccacagtcctcaactccatccccAGG-----------------CGCGGACCCCTCCTACTCCAGGGCAGAGGAGTCCAGTCCTCAACTTTCTTTTCCTTCTAGCTCAGAAGTGTGGGAACCCAGCCTCTCCTATTCCCAAGACACCCAAACTCCCA-------------------------------------GCCCTTAGCCATCCCCTCC----TTCCAGACTAGCCTGGTTCTCTAGGCTTCTCCTCCTCAGACC------------CCTTCAGTTCCTTTTCCCCCCATAATATCAGGAAGTGGAACCT--TCTCTTCAGCCCTC-AGACTCAGCAGGCCAGGCGTCCCCTT---TCCTCCAGCAGGACTCCCACCTAGCCTGAAGGTCGGATGGATCTGAGCTTCTCCTGGCAT-C---CCTACCTCCTCTGGCCTCCCGGGGGGCCAGCCACCCCCTGGAGGAGCCCCAGGCTTCTGATTCCAAGGTTGGGTTTT-CTTCCATGGCCCCAGGCTGGGCT------GTTTCTAGTGGCCA-CCAGGCAAACACTGCCCCAGGTA----AGGGAGGGGCCCGGGGCAGGTGTGTACCTGGCCAGTAGGTGGCCCGG---AGGGAGTAAGGTACA---CTTCCTGTAGTTTCTCAGGGCCGCTGATGCGAAAGGTGTCCTGGGAACTGAAGTCCCTCTGGTGCCCCA---GGCCTGACAGTTTGGTTCCTGG--GCTGGGCAG--------CTGTACCTCACCCC-------------------------GGACTTTGTGGC-CTAAGTCCTTCCTGCCGTTTATCA-CC--CAGATACCTGCACAGACACAATGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACGTGGTGA-CCTGTCATAGGCCAAGGGATGAGAAGAGGGTGCCAGGAGCGTTGGG-GCCCCGAGGTGGCTCAGATGGAAGCCAT----GGGACGGCCGTCCCCAGGCCCGCGCAtctgcacctcagtttcccctttgtgaaatgggaaacttatgcttccttccaagtctgcaatatcggtgccatgagctaaaagtggagcgAAAGACACAAGGAAGAAG-------CTTCCCATTCCCAGGACCTGCCCCCAAGCT--CTGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGTCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGCGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCCACGA-GACTCTTGTCCGGA---CAAAACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGTCCCTGGGC---------------GGAGGG------CAGGGAGGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGAGTATTT--AGCTGGGGAAAAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGGG--GAGGAGAC------------------------------AGCGGCCTGGTTCACAGAATTCCCGGG------------------A-----CCAGCTGGCAGAGGGAGCGTCACGG----AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCCAAAGCCAGCCCCAGCCCCAGGGCTGCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGCGTGTCGGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCGTAGGCGCGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGAGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTCCT-GAGGAGG-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47143510 1835 +  51301725 cctcctccctcaga-ccaggaaaccaggtccccagcccctcctccctcaggcccaggAGTCCGAGTGCCAGTCTCTACTTTCCCTGAACCCAGGGGCCCACAGTCCTCAACTCCATCCCCAGG-----------------CGTGGACCCCTCATACTCCAGGACA---GAGTCCAGTCCTCAACTTCCTTTTCCTTCTAGCTCAGAAGTGTGGGAACCCAGCCTCTCCTATTCCCAAGACACCCAAACTCCCA-------------------------------------GCCCTTAGCCCTCCCCTCC----TTCCAGACTAGCCTGGTTCTCTAGGCTTCTCCTCCTCAGACCCCAGAGTTTCAGCCTTCAGTTCCTTTCTCCCCC---ATATCAGGAAGTGGAACCT--TCTCTTTAGCCCTT-AGACTTAGGAGG----------CCTT---TCCTCCCGCAGGACTCCCACCTAGCCTGAAGGTCGGATGGATCTGAGCTTCTCCTGGCAT-C---CCTACCTCCTCTGGCCTCCCGGGGGGCCAGCCACCCCCTGGAGGAGCCCCAGGCTTCTGATTCCAAGGTTGGGTTTT-CTTCCATGGCCCCAGGCTGGGCT------GTTTCTAGTGGCCA-CCAGGCAAACACTGCCCCAGGTA----AGGGAGGGGCCCGGGGCAGGTGTGTACCTGGCCAGTAGGTGGCCCGG---AGGGAGTAAGGTATA---CTTCCTGTAGTTTCTCAGGGCCGCTGATGCGAAAGGTGTCCTGGGAACTGAAGTCCCTCTGGTGCCCCA---GGCCTGACGGTTTGGTTCCTGG--GCTGGGCAG--------CTGTACCTCACCCC------------------------GGGACTTCGTGGT-CTAAGTCCTTCCTGCCGTTTATCA-CC--CAGATACCTGCACAGACACAATGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACATGGTGA-CCTGTCATAGGCCAAGGGATGAGAAGAGGGTGCCAGGAGCGTTGGG-GCCCCGAGGTGGCTCAGATGGAAGCCAT----GGGATGGCCGTCCCCAGGCCCACGCATCtacacctcagtttcccctttgtGAAATGGGAAGCTTATGCTTCCTTCCAAGTCTGCAATATCGGTGCAATGAGCTAAAAGTGGAGCGAAAGACAC----AAGAGG-------CTTCCCACTCCCAGGACCTGCCCCCAAGCT--CTGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGTCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----CGTTTTGGGGAAGTGCAGTGCTCTCTGGGCACCCAGAAGCTGGAGCAGGGGCCCACCA-GACTCTTGTCTGGA---CAAAACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGTCCCTGGGC---------------GGAGGG------CAGGGAGGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGAGTATTT--AGCTGGGGAAAAGGAAATTCTCTCCAGGACCCTCTCCAAGATAAAGACTCTTTCTGGG--GAGGAGAC------------------------------AGCGGCCTGGTTCACAGAATTCCCGGG------------------A-----CCAGCTGGCAGAGGGAGCGTCATGG----AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCCAaagccagccccagccccagggctgCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGCGTGTCGGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCGCGCATCTTCAGGAACCAGTGTACCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGTCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGAGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTcct-gaggagg-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46848769 1855 +  50890351 cctcctccctcaga-ccaggaaaccaggtccccagcccctcctccctcaggcccaggagtccgggtgccagtctgtactctccctggacccaggggcccacagtcctcaactccatccccAGG-----------------CGCGGACCCCTCCTACTCCAGGGCAGAGGAGTCCAGTCCTCAACTTCCTTTTCCTTCTAGCTCAGAAGTGTGGGAACCCAGCCTCTCCTATTCCCAAGACACCCAAACTCCCA-------------------------------------GCCTTTAGCCCTCCCCTCC----TTCCAGACTAGCCTGGTTCTCTAGGCTTCTCCTCCTCAGACCCCAGAGTTTCAGCCTTGAGTTCCTTTCTCCCCCATAATATCAGGAAGTGGAACCT--TCTATTTAGCCCTC-AGACTCTGCAGGCCAGGCCTCCCCTT---TCCTCCAGCAGGACTCCCCCCTAGCCTGAAGGCCAGATGGATCCGAGCTTCTCCTGGCAT-C---CCTACCGCCTCTGGCCTCCCGGGGGGCCAGCCACCCGCTGGAGGAGCCCCAGGCTTCTGATTCCAAGGTTGGGTTTT-CTTCCATGGCCCCAGGCTGGGCT------GTTTCTAGCGGCCA-CCAGGCAAACACTGCCCCAGGTA----AGGGAGGGGCCCGGGGCAGGTGTGTACCTGGCCAGCAGGTGGCCCGG---AGGGAGTAAGGTACA---CTTCCTGTAGTTTCTCAGGGCCGCTGATGTGAAAGGTCTCCTGGGAGCTGAAGTCCCTCTGGTGCCCCA---GGCCTGACAGTTTGGTTCCTGG--GCTGGGCAG--------CTGTACCTCACCCT------------------------GGGACTTCGTGGC-CAAAGTCCTTCCTGCCGTTTATCA-CC--CAGATACCTGCACAGACACAATGCCTTTGTGCAACACTTTATTGGGAAAGATTTACACATGGTGA-CCTGTCATAGGCCAAAGGATGAGAAGAGGGTTCCAGGAGCGTTGGG-GCCCCGAGGTGGCTCAGATGGAAGCCAT----GGGACGGCCGTCCCCAGGCCCGCGCAtctgcatctcagtttcccctttgtgaaatgggaagcttatgcttccttccaagtctgcaatatcggtgcaatgagctaaaagtggagcgAAAGACACAAGGAAGAGG-------CTTCCCACTCCCAGGACCTGCCCCCAAGCT--CTGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGTCCAAAA--CCCACTGCCCAGGGGCCCCTTC-----TGTTTTGGGGAAGTGCAGTGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCCATGA-GACTCTTGTCTGGA---CAAAACTTTGATTTTGTAGGAGTGGA---------G---GT-------GGTCCCTGGGC---------------AGAGGG------CAGGGAAGACACCCCCGGGTCTGCTTC-AGTTGCAGGCAGAGTATTT--AGCTGGGGAAAAGGAAATTCTCTCCAGGACCCTCTCCAAGGTAAGGACTCTTTCTGGG--GAGGAGAC------------------------------AGCAGCCTGGTTCACAGAATTCCCGGG------------------A-----CCAGCTGGCAGAGGGAGTGTCACGG----AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGATGCTGCCTTCCGCCGGCTGGGGCTGCCCCCACCCAAAGCCAGCCCCAGCCCCAGGGCTGCCAGGGCCAGGAAGTGGATACAGAAGTAGATGGAGGCCCAGTACCGAAGCGTGTCGGCCAAGGAGAGCAGCACGAAGCCCATGCACATGTAGTCATAGGCGCGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGGCCCCCTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGAGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCGTGCCAGTAGGCGCTCAGCAGCATGGTCCAGGCGCTCCT-GAAGGGG-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45430073 1803 +  49145316 cctcctccctcggacccaggagtccagg-ccccaggccctcctccctcagacccaggagtccaagtgccagcctctacttcacctgaacccaggggtccacagccctcgatcccatccccAGGGACTCAAA---------TGTGGACCCCTCCTACTCCAGGGCAGAGGAGTCCAGCCTTCAACTTCCTTTTCCCTCTAGTTCGGGAGTGTGGGGACCCAGCCTCTCCTATACCC--GACACCCAAACTCCTA-------------------------------------GCCTCTCACCCTCCCCTCC----TCCCAGACTAGCCTGGTTCTCCAGGCTCCTCCTCCTCAGACCCTGGAGTTCCAGCCTCCACTTCCCTTCTCTCCTGTAATACCAGGAAGTGAAACCTTCTCTCTTCAGCCCTC-AGGCTCAGGAG--------------------------------TCCCACCTAGCCTGAAGGTTGGGTGGATCTGAACCTCTCCTGGCTT-C---CCTACCTCCTCTGGCCTCCCGGGGGGCCAGCCACCCGCTAGAGGAGCCCCAGGCTGCTGAATCCAGGGTCGGGTTTT-CTTCCATGGCCTCAGGCTGGGC--------TCTCTAGTGGCCA-GCAGGCAGACACGGCCCCAGGTA----AGGGCGGGGCCAGGG-CAGGTGTGTACCTGGCCGGCAGGTGGCCCGG---AGGGAGTTAGGTACACTTCTTCCTGTAGTTTCTCAGGGCTGGGGATTCGAAAGGTCTCCTGGGACCTGAAGTCCCCGTGGTGCCC-G---GGCCTGACCGTTTGGTTCCTGG--GCCAGGCTGGCCG----CTGCACCTCAC-----------------------------------------CTGAGAC--TCCCGGTGTTTGTCA-CCCGCAGGTACTTGCACAGACACGATGCATTTGTGCA--ACTTTATTGGGAAAGATTTACACACTGTGA-CCTGTCACAGGCCAAAGGATGAGAAGAGGGAGCCAAGAGTGTTGGG-GCCCCAAGGTGGCTCAGACATAAGCCGT----GGGGTGGCAGGCCCCAGGCCTGTGTAtccgtgcctcagtttcctttttgtgaaatgggaagcttatgcttccttccaagtctgcaatatgggcgtgatgagctaaGGGCGGAGTGAGAGACACAGGGAAGAGG------------------------CTGCCCC--AGCT--CCAACCCCACACTGTGGATGC--AGAAAGGGAATTTGCCC-AAA--CCCACCACCCAGAGGCCCCTTC-----CGTTCTTGGGTAGCGCAGTGCTCTCTGAAGATCCCAAAGCCGGAGCAGGGGCAAGGGA-GACTTT--TCAGGA---CAGGACTTGGATTTTGTAGGAGGGGAGTGGCCACTG---GA-------GGCCCCTGGGC---------------AGAGGG------CAGGGAGGACACTGGCAAGTCTGCTTC-AGTGGCAGGCAGGGTATT---AGCTGGGGAAGAGGAAATTCTCTCCAGGACCCTTGCCAAGGTAAGGACTCCTTCTGGG--GAGGAGAC------------------------------AGCAGCCTGGTTCACAGAATCCCCGGG------------------A-----ACCGCTAGCAGAGGGAGCGTCTCGA----AGCTTACTCCTCCCGGAGCTTCTCCGGGGCAAG---GCTGGTGGGCTGGGAGGCTGCCTTCCGCCGGCCGGGGCTGCCCCCAGCCAATGCCAGCCCCAGCCCCAGGGCAGCCAGGGCCAGGAAGTGGATGCAGAAGTAGATGGAGGCCCAGTACCGAAGTGTGTCTGCCATTGAGAGGAGCACGAAGCCCATGCACATGTAGTCATAGGCACGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGCCCCCTTGGGCTCAGCCGCCCCCGCAGGGCAGACTCCAGCCGGCCCTCCGCAGCCAGGCACAGCGGGATGGTCAGGAAGCTCAGGTAGTAGCCCGGGTGGAGGCCATGCCAGTAGGCACTCAGCAGCATGGTCCAGGCGCTCCT-GAGGAGG-
i calJac3.chr22             C 0 I 1119
s mm10.chr7                   3677105 1754 + 145441459 ----------------------TTCGTGGCCCTAGACTCTCCCCCAC--------GGAGTCTAGGT-----------------TTGAACTC------CCATATCCCT-----TCTACTCTAAG-----------------TGTG----------ACTCTA--------AACTTCAA----CAACTTCCCGTTCCCTC--ATTGGTGAGCTTAGAATCCTGGCTCCTCACAAGCCTGATA---TTAGGGACCCG-------------------------------------TTTCCTGACTCTGTCCTCCAAGACCGTAAACTTGTACTGTTTTTCGGG------------AAATC---------------TGAGTTTCCTTCT---TAGGAAACCCAGGAAATGAAAGT---CCTCTTCGAGTCTC-AGGTTCAGGAGCTCAG--CTTCCCT----TCCTTTA--------------------------TGAATGGACCTGA--CTTTGCTGGACT-CTCTCCTACCTGTTCTGGCTTTCCGGGAGCTGGAGCAGGCTGGGGACTGGCCCCAGGCTTCCATGTTTGTGGATGTACCGTACTTCCA--GCACCCGTTCTTTCT------GTCTCTGGAGGCCC-CAGGGCGGGGACTGCCCTCGGTAAGGGAGGGAGGGGCCTGCTACAGGTCTGCACCTGGCCACTAGGTGACCCGG----GTGACTGCGGTACA---TTTCCTAT-----------------------AAAGGTCTCCTGGGAATTGAAGTCCTTACAGCCTCCTGAGCGGCCAAAC-------TTCATGGCAGCCAGACCC--------CCCCACCCCACCCCCCCAATACACACACAAATGCACACTGGCATTCTGGGT-CAGTGTCTTT-----GGTTTGTTG-CCCACAGTTATACTCACAAACA-AATGCA--TGTGTAACACTTTATTGGGAAAGCTTTATACATTCTGG-CCTGTCACAGGCCAAG-GATGACACTGGGTGGTAGGTTGTATGGGGAGCCCAGAAATGGCTCAGGCAGAAGCTGCTGTAAGAGCAAGCTCCCCTGGGGCTTCTCA----CATTTTAGCTTCTCCTTCAGCATGTGTAAGAC-CATGGTC---------TCTGAAACACTGGTGTGATGA--TAAAAACAAAGAGGAAAAC------AAGAAGGCTATCCCTCCCCTCTCCCAGAACCTGGCCCTGAAGTTCCTGCCCCCATACTGGGGACCC----ACTGGGAGTCTGTCTAAGATGCCAGATGACCACTGGTCCCTGCAAGGGCATTTTTGGGAAGTGTG--GCTTTTTGAACATCTGAAGATTGTTGCAGAGATAATAGG---TTCAAGAGTGGATAGTAATACCCTGATGTTAGCAGAG-GAA---------G---GTCTGAAAAGGTCAAGATGC---------------TGAGAGAGCCCAAGAGAAGGATACC------TTAGCTTTAAATAGAAGGCAGAGGAATT--A-TTTGGGAAGAGGGGATCCTCTCCAGGCTCTTAGCCAAACAAGGGATTCTTGCTGGGTAAAGGaaacaaacaaacaaacaaacaaaAACCCCAAACAAACAGCCTGGTTCATGGAATTCCCAAA------------------AAAGCTTGAACTGGAAGGCAGGCCAATGCAGCAG-AGCTCACTCTTCCCGGAGCTTTTCCTTCGCTTGGCTGCTGGTGGCCTGGGATGGTGTCTTCCTCTTGCTGGGGCTGCCCCCACCCAAAACCAGCCCCAGCCCCAAGCAAGCCAGGGCTAGAAAGTGGACCCAGAAGTAGATGGAGGCCCAGTACCGGAGTGTGTCAGCCATGGAAAGGAGCACAAAGCCCATGCACATGTAGTCGTAGGCACGCATCTTCAGGAACCAGTGGACCCAGTCCCAGGCTTTCTGGCCCCCGGGGCTCAGGTGTCTCCGCAAGGCTGACTCCAAATAGCCCTCAGCAGCCAGGCACAGCGGGATGGTCATGAAGCTTAGGTAGTAACCAGGGTGGAGGCCATGCCAGTAGGCACTCAACAGCATGGTCCAGGCACTCCTGGAGGAAG-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19637707 1796 - 122678785 CCTCCTCCCTCAGACCCAGGAGCCCAGG-CCCCTGCTCCTCCTCCCTCAGACCCAGGAATCCAGGTCCCCAGTCCCTCCTCCTTCAGACCCAGGAGTCCA-GGCCCCATGTCCCCTCTGTAAGCACTGAAATGTGGGCTCCCTAGACCCCTCCTTCCTCAGGGCTGAGGAACCCAGTCTTCAATTTCCTTTTTCCTCTTGCTCAGGAGTTT-GCAACCCTGCCCCCCCTCTTC--------------------------------------------------------------------TCCCCTCT----------ACT------GCTCCCCAGG--------------ACACAGGAGTCCTAGCTCCTGGTTCCCTTCTCCCTCAGACAACCAGGAATTTAACCCT-CCCCCTTCTGCCCTCTGGACCCTGGAGTTTCAGCCTCCGGTCCCTGCCTCCCTCAGGACTTCCACC-AGCCCAA---------GGGGCTGGACCCCCTCCCACGC-C---CCCACCTGCTCTGGCCTCCCGGGGTGCCAGCCACCCTCCAGGGGAGCCCCAGGCCTCCGGTTCCCATGTCGGGCGCT-CTTCCATGGCCGCAGGTGAAACTGTTTCCGTCTCCAGCGGCCAGCTGGGCGCGGTCAGCCGCAGGTA----AGGAAGGGACATGGG-CAGGTCCATACCTGGCCACCAGGTGGCTCAGGGAGGGGAATCCGAAGCA---CTTGTCATCAACCAACAGGGCGGCTGCT-CGAAAGGTCTTCTGGGAACCGAAACCCCCA-GATGCC------AGTGTGACACCAGGGAGCCTGG--CTCGAGCCCATC-----CTGCAGCGCCCATC------------------------CTGCAGCGGCTGT-GTGAGCCCCACAC-CTGGTGGTCA-CTCATAGACACACATACAGAC--------CTCTTGGAACATTTTATTGGGGGAGGTTCACATAGTCTGACCCTACCTTAGGCCAGAAAATGACAAGAGGGTGACATAAGCACTGGG-ACCCTGAGGTGGCTCAGATGGAAGCTGC----AG---------CTCCTAGC-----------TGCCTCAGTTTACCCGTTGTGAA-----------ATGTTCCCTTCCCGGCCTGAAACACTGCT-TGATGA---------AAGGGGGAAAGCCCACGAGAGAGG--------TTCCCACTCCCAGGGCCTGCCCTGAGGCT-CCCGGCCCCACACCATGGAGCCAGAAACAGGGAATTTGCCCGAGA--AT-----CCCCGTGGCCCTGTT--GGGGGGCTGGGGAGTGGGTAGCTCGCTCTGAAGACCTGGCAGCTGGGGCAGGGACCAAGGGAGATTCT--TCTAGA---CAACACCTGAACTTTCCAGAAGGGAA---------GTCTGA-------GCTTCCTGAGCCCTCGGGTCAGGGCAGGGGAG------CAGGGAGAGCAGCCCTGC-CTTGCT---GGGGGAGGGTGGGGTGCAG--AGCTG------AGGGAATCCTCTCCAGGCCCCAGCCCAA-TCAGGGGCTCTTTCTGGG-AAAGGAGAC------------------------------AGCAGCCTGGTTCATGGAATTCCCAGGCAGAAGCTTAGTGGCTGCA-----GTGGCGGGCAAA-GGAGTGTCACGGCGGTGGCCTACTCCTCCCGGAGTTTTTCTGGGGCGAG---GCTGGCGGCCTGGGGTGACGTCTTCCTGCGGCCGGGGCTGCCCCCACCCAGGGCCAGCCCCAGCAGCAGGGCGGCCACAGCCACGATGTGGACACAGAAGTAGACAGAGGCCCAGTACCGGAGGGTGTCTCCCAGGGACAGCAGCACAAAGCCCATGCACATGTAATCGTAGGCGCGCATCTTCAGGAACCAGTGCACCCAGTCCCAGGCCTTCTGGCCCCCGGGGCTGAGCCGCCCCCGCAGGGCTGACTCCAGGCAGCCCTCAGCCGACAGGCACAGCGGGATGGTCAGGAAGCTTAGGTAGTAGCCAGGGTGCAGGCCGTGCCAGTAGGCGCTCAGCAACATGGTCCAGGCGCTCCT-TGGGGGAG
i canFam3.chr1              I 878 C 0

a score=42844.000000
s hg38.chr19_GL949751v2_alt    149248 14 +   1002683 AGGCTGGGAGTCAG
s panTro4.chr19              59083869 14 +  63644993 AGGCTGGGAGTCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959678 14 +  60714840 AGGCTGGGAGTCAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726120 14 - 106955855 CAGCTGGGAGTCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60017537 14 +  64156825 AGGCTGGGAGTCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55041178 14 +  59248254 AGGCTGGGAGTCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145345 14 +  51301725 aggctgggggtcAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46850624 14 +  50890351 AGGCTGGGAGTCAG
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3678859 12 + 145441459 --ATATTGAGTCAG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19639503 14 - 122678785 AGGCCGAGATTCAG
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45431876 1119 +  49145316 I

a score=253274.000000
s hg38.chr19_GL949751v2_alt    149262 78 +   1002683 GACCTACGagtccaggtccccagtgcccactgcccccagatccaggagtccaggaccccag--cccctcctccctcagac
s panTro4.chr19              59083883 78 +  63644993 GACCTACGagtccaggtccccagtgcccactgcccccagatccaggagtccaggaccccag--cccctcctccctcagac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959692 78 +  60714840 GACCTGCGagtccaggtccccagtgcccacggtccccagatccaggagtccaggaccccag--cccctcctccctcagac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726134 78 - 106955855 GACCTGCAagtccaggtccccagtgcccactgcccccagatccaggagtccaggaccccag--ccccgcctccctcagac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60017551 78 +  64156825 GACCTGCGagtccaggtccccagtgcccactgaccccagatccaggagttccgggctccag--cccctcctccctcagac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55041192 78 +  59248254 GACCTGCGagtccaggtccccagtgcccactgaccccagatccaggagtcccgggctccag--cccctcctccctcagac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145359 78 +  51301725 GACCTGCGAGTCCAGGTCCCCAGTGCCCACTGACACCAGATCCAGGAGTCCGGggctccag--cccctcctcccttaGAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46850638 78 +  50890351 GACCTGCGagtccaggtccccagtgcccactgaccccagatccaggagtccggggctccag--cccctcctccctcagac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45432995 77 +  49145316 gacccagaaatccagagccccagc-ctctcctcccccagccccaggagtccagacccccag--cccctcctccccaagcc
i calJac3.chr22             I 1119 C 0
s mm10.chr7                   3678871 54 + 145441459 GACACACAAGTTCAAG-CTTCAGTCCTCACTGTCTCATG-------------------------CCTCCCTTCCTCAAGC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19639517 79 - 122678785 GACCCGGGAG-CCAGGCCCCCTAGCCCCTCCTCCCTCAGACCCAGGAGTCCAGGCCCCCCAGCCCCCTCTTCTCTCAGAC
i canFam3.chr1              C 0 C 0

a score=76359.000000
s hg38.chr19_GL949751v2_alt    149340 35 +   1002683 cgagaagtgcagg--cccagcccc-tcctccctcagac
s panTro4.chr19              59083961 35 +  63644993 ccagaagtgcagg--cccagcccc-tcctccctcacac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959770 13 +  60714840 ccagaagtgcaga-------------------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726212 35 - 106955855 ctagaagtgcagg--cccagcccc-tcctccctcagac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60017629 34 +  64156825 ccaggagtgcagg--cccagcccc-tcctccctcaga-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55041270 35 +  59248254 ccaggagtgcagg--cccagcccc-tcctccctcagac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145437 36 +  51301725 CCAGGAGTGCAGG--ccccaccccgtcctccctcagac
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45433072 37 +  49145316 ccaggagtccagacccccggcccc-tcctcccccaggc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3678925 35 + 145441459 CCAGGAGTACAGG--GCTCAGCCC-TCCTCCCTCAGAT
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19639596 36 - 122678785 CCAGGAGTCCAGG-CCCCAGCCCC-TTCCTCCTCAGAC
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46850716  0 +  50890351 C

a score=57425.000000
s hg38.chr19_GL949751v2_alt    149375 31 +   1002683 ccaggagtccaga-ccccacc-ccttcctccct
s panTro4.chr19              59083996 31 +  63644993 ccaggagtccagg-ccccagc-tcctcctccct
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60017663 32 +  64156825 ccaggagtccaggcccccagc-ccctcctccct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55041305 31 +  59248254 ccaggagtccaga-ccccagc-ccctcctccct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145473 32 +  51301725 ccaggagtccaga-ccccacctccctcctccct
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45433109 31 +  49145316 ccaggagtccagg-ccccagc-ccctcctccct
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3678960 29 + 145441459 TTAGGAGTTCAGG-CCC--AC-TCTTCCTTCCT
i mm10.chr7                 C 0 I 4687
s canFam3.chr1               19639632 30 - 122678785 CCATGAGTCCAGG-CCCCA-C-CCCTCCTCCCT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55959783  0 +  60714840 C
e nomLeu3.chr10             102726247  0 - 106955855 C
e chlSab2.chr6               46850716  0 +  50890351 C

a score=120964.000000
s hg38.chr19_GL949751v2_alt    149406  90 +   1002683 cagacccaggagatcagg-ccccag--tccctcctccctcagacccaggagaccag-accccacc-----------------------------------tccctcctccctcagatccaggagtccag
s panTro4.chr19              59084027 124 +  63644993 cagacccagaagtgcagg--cccag--cccctcctccctcacacccaggagtccag-accccaccccttcctccctcagacccaggagatcaggccccagtccctcctccctcagacccaggagtccag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959783  71 +  60714840 --------------------cctgg--cccctcctccctcagacccaggagtccag-accccacc-----------------------------------ttcctcctgcctcacatccaggagtccag
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60017695  89 +  64156825 caga-ccaggagtccaggcccccag--cccctcctccctcaga-ccaggagtccag-gcccccag-----------------------------------cccctcctccctcagacccaggagtccag
i rheMac3.chr19             C 0 M 200
s macFas5.chr19              55041336  90 +  59248254 cagacccaggagtccaggcccccag--cccctcctccctcaga-ccaggagtccag-gcccccag-----------------------------------cccctcctccctcagacccaggagtccag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145505  61 +  51301725 cagatccaggagaccagg-ccccag--gccctccccactcagacccaggagaccag-gccccagg----------------------------------------------------------------
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45433140  90 +  49145316 cagacccagaaatccagacccccag--cccctcctccctcagacccaggagtccag-gccccagc------------------------------------ccttcctcccccagacccaggagtccag
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19639662  94 - 122678785 CAGACCCAGGAGTTCAGGCCCCTCGGCCCCCTCCTCCCTCAGACCCAGGAGTCCAGAGTCCCAGC-----------------------------------CCGCTCCTCCCTCAGACCCAGGAGTTCAG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e nomLeu3.chr10             102726247   0 - 106955855 C
e chlSab2.chr6               46850716   0 +  50890351 C

a score=3412.000000
s hg38.chr19_GL949751v2_alt    149496 18 +   1002683 --accccacttccctcctcc
s panTro4.chr19              59084151 18 +  63644993 --accccacctccctcctcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959854  7 +  60714840 --agcccac-----------
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55041426 18 +  59248254 --gcccccagcccctcctcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145566  9 +  51301725 -----------ccctccccG
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45433230 17 +  49145316 ---gccccagcccctcctcc
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19639756 20 - 122678785 GCCCCTCAGCCCCCTCCTCC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e nomLeu3.chr10             102726247  0 - 106955855 C
e chlSab2.chr6               46850716  0 +  50890351 C
e rheMac3.chr19              60017784 200 +  64156825 M

a score=9440.000000
s hg38.chr19_GL949751v2_alt    149514 7 +   1002683 ctcagat
s panTro4.chr19              59084169 7 +  63644993 ctcagac
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60017984 7 +  64156825 ctcagac
i rheMac3.chr19             M 200 C 0
s macFas5.chr19              55041444 7 +  59248254 ctcagac
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45433247 7 +  49145316 ctcagac
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19639776 7 - 122678785 CTCAGAC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e ponAbe2.chr19              55959861 0 +  60714840 C
e nomLeu3.chr10             102726247 0 - 106955855 C
e chlSab2.chr6               46850716 0 +  50890351 C
e papAnu2.chr19              47145575 0 +  51301725 C

a score=102117.000000
s hg38.chr19_GL949751v2_alt    149521 44 +   1002683 ccaggagaccagaccc--cacctccctcctccctcagatccaggag
s panTro4.chr19              59084176 44 +  63644993 ccaggagaccagaccc--catttccctcctccctcagatccaggag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959861 25 +  60714840 ---------------------ttccctcctccctcagatccaggag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726247 44 - 106955855 ccagaagaccagaccc--cacctccctcctccctcagatccaggag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60017991 44 +  64156825 ccaggagtccagaccc--cagctccctcctccctcagatccaggag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55041451 44 +  59248254 ccaggagtccagaccc--cacctccctcctccctcagatccaggag
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46850716 43 +  50890351 tcaggagcccaggccc--cacc-ccctcctccctcagatccaggag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45433254 44 +  49145316 ccagaaatccaggccc--ccagcccctcctccctcagacccaggag
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19639783 46 - 122678785 CCAGGAGTTCAGGCCCCTCAGCCCCCTCCTCCCTCAGACCCAGGAG
i canFam3.chr1              C 0 I 2038
e mm10.chr7                   3678989 4687 + 145441459 I
e papAnu2.chr19              47145575  0 +  51301725 C

a score=674534.000000
s hg38.chr19_GL949751v2_alt    149565 264 +   1002683 accaggccccaggccctccccactcagacccatga-------ccctagctccGGAAGGCGGAGGAGGCTACAGGCCTCTGTCTCCTTCAGGGATCCAGGAGCTCGCAGCCTTCCATACACACT---CAGTCCTAT-CAAGACCCTCTTCTTCTTTAAAGATTTAACATTTTATAT-----TCCACTGCCCTTCCTCTCCCAGGACCAACAAGTCTTAATTCTTCAGCCCAGT--GG-----ttttttttt-tttttttttgagacagagtctcgctctgtcgcccagg
s panTro4.chr19              59084220 266 +  63644993 accaggccccagaccctccccgctcagacccaTGC-------CCCTAGCTCCGGAAGGCGGAGGAGGCTACAGGCCTCTGTCTCCTTCAGGGATCCAGGAGCTCGCAGCCTTCCACACACACT---CAGTCCTAT-CAAGACCCTCTTCTTCTTTAAAGATTTAACATTTTATAT-----TCCACTGCCCTTCCTCTCCCAGGACCAACAAGTCTTAATTCTTCAGCCCAGT--GG---ttttttttttt-tttttttttgagacagagtcttgctctgtcgcccagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55959886 260 +  60714840 accaggccccaggccctccccgctcagacccatgc-------ctctagctccagAAGGCGGAGGAGGCTATAGGCCTCTGTCTCCTTCAGGGATCCAGGAGCTCCCAGCCTTCCATACACACT---CAGTCCTAT-CAAGACCCTCTCCTCCTTTAAAGATTTAACGTTTTATAT-----TCCACTGCCCTTCCTCTCCCAAGAACAACAAGGCATAATTCTTCAGCCCAGT--GG---------ttttt-tttttttttgagacagagtctcgctctgtcgcccagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726291 273 - 106955855 accaggccccagaccctccgcgctcagacccaTGC-------CCCTAGCTCCAGAAGGTGGAGGAGGCTATAGGCCTCAGTCTCCTTCAAGGATCCGGGAGCTCGCAGCCTTCCATACACACT---CAGTCCTAT-CAAGACCCTCTCCTCCTCTAAAGATTTAACACTTTATATTCCACTCCACTGCCCTTCCTCTCCCAGGACCAACAAGTC-TAATTCTTCAGCCCAGT--GGtttttttttttttt-tttttttttgagacggagtctcgctctgtcgcccagg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60018035 265 +  64156825 accaggccccaggccctccctgctcagaaccaTGC-------CCCTAGCTCCAGAAAGCGGAGGAGGCGATAG------GTCTCCTTCAGGGATCCAGGAGCTCGCAGCCTCCCATACACACT-CACAGTCCTAT-GAAGACCCTCTCCTCCTTTAAAGATTTAACATTTTATGT-----TCCACTGCCCTTCCTCTCCCAGGACCAACAAGTC-TAATTCTTCAGCCCAAT--GGTTTTTTTTTTGTTTGTTTTTTTTTTAGACAGAGTCTTTCTCTGTTGCCCAGG
i rheMac3.chr19             C 0 M 581
s macFas5.chr19              55041495 265 +  59248254 accaggccccaggccctccctgctcagaaccaTAC-------CCCTAGCTCCAGAAAGCGGAGGAGGCGATAG------GTCTCCTTCAGGGATCCAGGAGCTCGCAGCCTCCCATACACACT-CACAGTCCTAT-GAAGACCCTCTCCTCCTTTAAAGATTTAACATTTTATGT-----TCCACTGCCCTTCCTCTCCCAGGACCAACAAGTC-TAATTCTTCAGCCCAAT--GGGtttttttttgtttgttttttttggagacagagtctcgctctgtcacccgtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145575 242 +  51301725 ----------------------CTCAGAACCATGC-------CCCTAGCTCCAGAAGGTAGAGGAGGCTATAG------GTCTCCTTCAGAGATCCAGGAGCTCGCAGCCTCCCATACACACT-CACAGTCCTAT-GAAGACCCTCTCCTCCTTTAAagatttaacattttatgt-----tccACTGCCCTTCCTCTCCCAGGACCAACAAGTC-TAATTATTCAgcccagt--ggttttttttttggtt-ttgttttttgagacggagtctcgctctgtcacccagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46850759 266 +  50890351 accaggccccaggccctccctgctcagaaccatga-------ccctagctccGGAAGGCGGAGGAGGCTATAG------GTCTCCTTCAGGGATCCAGGAGCTCGCAGCCTCCCATACACACT-CACAGTCCTAT-GAAGACCCTCTCCTCCTTTAAAGATTTAACATTTTATGT-----TCCACTGCCCTTCCTCTCCCGGGACCAACAAGTC-TAATTCTTCAGCCCAGTGGGGttttttttttgttt-tttctttttgagacggagtctcgctctgtcacccagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45433298 264 +  49145316 tccaggccctgggccctccctgctcaaacccaTGCCCCTTTTCCCTAGCTCCAGAAGGTGGAGGAGGCTATAGGCTGCTGTCTCCTTCAGGGATCCAGGAGCCCCGAGCCTTCCACACACACTTCACAGCTGTATCCCAGGCCATCTCCTCCTTTAAAGATTGATCATTTTATGT-----TCCACTGCCCTTCCTCTCCCAGGACCAAGAAGTC-TAATTGTTGGGCCCACT--GGttctttttctttct----------------gagtcttgccctgtggctcagg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I

a score=107570.000000
s hg38.chr19_GL949751v2_alt    149829 46 +   1002683 ctagagtgcagtggcgcgatcttggctcactgcaagctccgcctcc
s panTro4.chr19              59084486 46 +  63644993 ctagagtgcagtggcgcgatctcggctcactgcaagctccgcctcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55960146 46 +  60714840 ctagagtgcagtggcgcgatctcggctcactgcaagctccgccttc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726564 46 - 106955855 ctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55041760 46 +  59248254 ctggagtgcagtggccggatctcagctcactgcaagctccgcctcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145817 46 +  51301725 ctggagtgcagtggctggatctcgactcactgcaagctccgcctcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46851025 46 +  50890351 ctggagtgcagtggcccgatctcagctcactgcaagctccgcctcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45433562 46 +  49145316 ctggagtgcagtgacgcaatctcggctccctgcaacctccgcctcc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e rheMac3.chr19              60018300 581 +  64156825 M

a score=5192.000000
s hg38.chr19_GL949751v2_alt    149875 4 +   1002683 cagg
s panTro4.chr19              59084532 4 +  63644993 cggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55960192 4 +  60714840 cagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726610 4 - 106955855 cggg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55041806 4 +  59248254 cagg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46851071 4 +  50890351 cagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45433608 4 +  49145316 ttgg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e papAnu2.chr19              47145863 0 +  51301725 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=53422.000000
s hg38.chr19_GL949751v2_alt    149879 48 +   1002683 ttcacgccattctc-ctgcctcagcctcccgagtagctgggactacagg
s panTro4.chr19              59084536 48 +  63644993 ttcacgccattctc-ctgcctcagcctcccgagtagctgggactacagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55960196 48 +  60714840 ttcacgccattctt-ctgcctcggcctcccgagtagctgggactacagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102726614 48 - 106955855 ttcacgccattctc-ctgcctcagccaccagagtagctgggactacagg
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               46851075 48 +  50890351 ttcaagtgattctc-atgcctcagcctcccaagtggctgggattacagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45433612 48 +  49145316 ttca-gccattgtcactgcttcagcctcccgagtagctgggattacagg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e papAnu2.chr19              47145863  0 +  51301725 C
e macFas5.chr19              55041810  0 +  59248254 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=205251.000000
s hg38.chr19_GL949751v2_alt    149927 292 +   1002683 cgcccgccaccacgcccggctaattttcttttctatttttagtagagac-ggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatctgcccgccttggcctcccaaagtgctgggatcacaggtgtcagacaccacacccggGC-AGCCcggtggttcttaacctggggtcccaggtctggcatcagcatcacctgagaacttgtgagacatacaaatccttgtccccaccccttttgcaccagaagccct-gg---gggtggggcccaggagaagtcttcca
s panTro4.chr19              59084584 293 +  63644993 tgcccgccaccatgcccggctaattttcttttctatttttagtagagat-ggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatccgcccgccttggcctcccaaagtgctgggatcacaggtgtcagccaccacacccggGC-AGCCTGgtggttcttaacctggggtcccaggtctggcatcagcatcacctgagaacttgtgagacatacaaatccttgtccccaccccttttgcaccagaagccctggg---ggggggggcccaggagaagtcttcca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55960244 292 +  60714840 cgtctgtcaccacacccggctaattttcttttgtatttttagtagagac-ggggtttcaccgtgttagccaggatggtctcgctctcctgacccc--gtgatccgcctgcctcggcctctcaaagtgctgggattacaggtgtgagccaccgcacccggtc-AGCCcggtggttcctaacctggggtcccaggtctggcatcatcatcacctgagaacttgtgagacatacaaatccttgtccccaccccttttgcaccagaagccct-gg---ggttggggcccaggagaagtcctcca
i ponAbe2.chr19             C 0 I 478
s nomLeu3.chr10             102726662 296 - 106955855 cgcccaccaccacgcccggctaattttcttttgtatttttagtagagac-ggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatctgccctccttggcctcccaaagtgctgggattacagacatgagccactgtgtccggccTAGCCcggtggttcttaacgtggggtcccaggtctggcatcaacatcgcctgagaacttgtgagacatacaaatccttgtccccaccccttttgcaccagaagccct-ggttagggtggggcccaggagaagtcttcca
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45433660 273 +  49145316 catgtaccaccactcctggctaat----ttttctattcttagtagaggcgggggtttcaacatgttggccaggctggtctcaaactcttgacctcaggtgatccgcccacctcagtctcccaaagtgctgggattctaggcgtgagccactgAAGTGGGCC----Ccagtggttctt------------cagctctggcatcagcatcgactgagaacttgtgacacacacagatccctgtcgccacgcctcctgcaccagaagccct-gg---ggctggggccc---agaactcttccg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e chlSab2.chr6               46851123   0 +  50890351 C
e papAnu2.chr19              47145863   0 +  51301725 C
e macFas5.chr19              55041810   0 +  59248254 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=66628.000000
s hg38.chr19_GL949751v2_alt    150219 151 +   1002683 agttaacaagtcctcca-gtgactctgatgcctgttaacatttgacaactcctgCCTGGCTCATGAAGATCCAGAAGTCCCTGGCCTGTGGTCCTTCCTTATTCTGGGCCCAGGAGATATGTTCCTCTTCCTCCAAGGCCCAGCACCATCTT
s panTro4.chr19              59084877 151 +  63644993 ag-taacaagtcctccaggtgactctgatgcctgttaacatttgagaactcctgCCTGGCTCATGAAGATCCAGAAGTCCCTGGCCTGTGGTCCTTCCTTATTCTGGGCCCAGGAGATATGTTCCTCTTCCTCCAAGGCCCAGCACCATCTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102726958 151 - 106955855 gg-taacaagtcctccaggtgacttagatgcctgttaacatttgagaactcctgCCTGGCCCATGAAGGTCCAGAAGTCCCTGGCCTGTGGTGCTTCCTTACTCTGGGCCCAGGAGATATGTTCCTCTTCCTCCAAGGCCCAGCGCCATCTT
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45433933 141 +  49145316 gg-taacaagtattccaggtgacttcgatgcctgctaacatttgag-aCTGCTGCCTGGCCCATGAAGA---------CCCTGGTCTGTGGGCCTTCCTTATTCTGTGGCCAGGAGTTATGTTCCTCTTCCTCCAAGGCCCAGATCCATCTt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55960536 478 +  60714840 I
e chlSab2.chr6               46851123   0 +  50890351 C
e papAnu2.chr19              47145863   0 +  51301725 C
e macFas5.chr19              55041810   0 +  59248254 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=17634.000000
s hg38.chr19_GL949751v2_alt    150370 79 +   1002683 TCCTCACtctttt----------tatttttttggagacagagtctcgctctgttgccacacgacaaggctcactgcagcctctgcctct
s panTro4.chr19              59085028 89 +  63644993 TCCTCACtcttttttattttttatttttttttggagacagagtctcactctgtcgccacaggacaaggctcactgcagcctccgcctct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102727109 85 - 106955855 TCCTCACtctttt----tttttttttttttttggagacacagtctcgctctgtcgccatgcgacaaggctcaatgcaacctccacctct
i nomLeu3.chr10             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55960536 478 +  60714840 I
e calJac3.chr22              45434074  0 +  49145316 C
e chlSab2.chr6               46851123  0 +  50890351 C
e papAnu2.chr19              47145863  0 +  51301725 C
e macFas5.chr19              55041810  0 +  59248254 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=1813.000000
s hg38.chr19_GL949751v2_alt    150449 4 +   1002683 tgga
s panTro4.chr19              59085117 4 +  63644993 tgga
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102727194 4 - 106955855 tggg
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47145863 4 +  51301725 tggg
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55960536 478 +  60714840 I
e calJac3.chr22              45434074 0 +  49145316 C
e chlSab2.chr6               46851123 0 +  50890351 C
e macFas5.chr19              55041810 0 +  59248254 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=42472.000000
s hg38.chr19_GL949751v2_alt    150453 48 +   1002683 ttcaagcgattcttatgcctcagcctcccaagtagctgggattacagg
s panTro4.chr19              59085121 48 +  63644993 ttcaagcgattcttatgcctcagcctcccaagtagctgggattatagg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102727198 48 - 106955855 ttcaagctattctcatgcctcagcctcccaagtagctgggattacagg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55041810 48 +  59248254 ttcaagtgattctcatgcctcagcctcccaagtggctgggattacagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145867 48 +  51301725 ttcaagtgattctcatgcctcagcctcccaagtagctgggattacagg
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55960536 478 +  60714840 I
e calJac3.chr22              45434074  0 +  49145316 C
e chlSab2.chr6               46851123  0 +  50890351 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=409960.000000
s hg38.chr19_GL949751v2_alt    150501 330 +   1002683 caagcgccaccaaactcagctaatttctgtatttt---ttgttgttgttgttcagacggagtctcgctctgccgcccatgctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagcagctgggactacaggtgcccaccaccatgccaggctaatttttgtatttctggtaaagacggggtttcaccatgttggccaggatgctctcaatctcttgaccttgtgatccacccgccgtggcctaccaaagtgctgggattacaggcgtgagccactgcacccagcca
s panTro4.chr19              59085169 330 +  63644993 caaatgccaccaaactcagctaatttttgtatttt---ttgttgttgttgttcagacggagtctcactctgccgcccatgctggagtgcagtggcgcaatctcagctcactgcaacctctgcctcccgggttcaagtcattctcctgcctcagcctcccaagcagctgggactacaggtgcccaccaccatgccaggctaatttttgtatttctagtaaagatggggtttcaccatgttggccaggatgctctcaatctcttgaccttgtgatccacccgccgtggcctaccaaagtgctgggattacaggtgtgagccaccgcacccagcca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102727246 333 - 106955855 caagtgccaccaaacccagctaatttttgtattttttgttgttgttgttgttcagacggagtctcgctctgccacccatgctggagtgcagtggtgcaatcttggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagcagctgggactacaggtgcccaccaccatgccaggctaatttttgtatttctgttaaagacggggtttcaccatgttggccgggatggtctcgatctcttgacctcgtgatccacccgtcttggcctaccaaagtgctgggattacaggcgtgagccaccgcgcccggcca
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55041858 328 +  59248254 caagtgccaccaaacccagctaatttttgtatttt---t--ttgttgttgttcagacggagtctcgctgtgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagcagcggggactacgggtgtgtgccaccacgcctggctaatttttatatttttggtaaagacggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatccgcctgcctcggcctcccaaagtgctggaattacaggcgtgagccaccgtgcccggcca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47145915 327 +  51301725 caagcgccaccaaacccagctaatttttgta-ttt---t--ttgttgttgttcagacggagtctcgctctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctccacctcctgagttcaagtgattctcctgcctcagcctcccgagcagctgggactatgggtgtgtgccaccatgccaggctaatttttgtatttttggtaaagacggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccagcca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46851123 326 +  50890351 caagtgccaccaaacccagctaatttttgtatttt---t--ttgttgttgttcagac--agtctcgctctgtcacccaggctggagtgcagtggcgcagtctcggctcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagcagctgggactacgggtatgtgccaccacgccaggctaatttttgtatttttggtaaagacggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatccacctgcctcggcctcccaaagtgctggaattacaggcgtgagccaccgtgcccagcca
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55960536 478 +  60714840 I
e calJac3.chr22              45434074   0 +  49145316 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=65810.000000
s hg38.chr19_GL949751v2_alt    150831 39 +   1002683 tttttgtatttttagtagagatggggtttcaccacgttg
s panTro4.chr19              59085499 39 +  63644993 tttttgtatttttagtagagacggggtttcaccaccttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55961014 39 +  60714840 tttttgtatttctggtaaagatggggtttcaccacactg
i ponAbe2.chr19             I 478 C 0
s nomLeu3.chr10             102727579 39 - 106955855 tttttgtattttcagtagagacagggtttagccacgttg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55042186 39 +  59248254 tttttgtatttttagtagagatggggtttcaccacattg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47146242 39 +  51301725 tttttgtatttttagtagagatggggtttcaccacattg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46851449 39 +  50890351 gttttgtatttttagtagagatggggtttcaccacattg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45434074  0 +  49145316 C
e rheMac3.chr19              60018300 581 +  64156825 M

a score=108500.000000
s hg38.chr19_GL949751v2_alt    150870 94 +   1002683 gccaggatggtctcgatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggtctgagccaccgcgcccagccTC
s ponAbe2.chr19              55961053 94 +  60714840 gccaggatggtcttgatctcctgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggtctgagccaccgcgcccagcctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102727618 92 - 106955855 gccaggatggtcttgatcttctgactttgtgatccacccgtcttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccATCC--
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55042225 93 +  59248254 gccgagatggtcttgatctcctgaccttgtgatccatctgcctcggcctcccaaagtg-tgagattacaggcgtgagccattgcacccggcctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47146281 93 +  51301725 gccaggatggtcttgatctcctgaccttgtgatccatccgcctcggcctcccaaaatg-tgggattacaggcgtgggccattgcacccggcctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46851488 93 +  50890351 gccaggatggtcttgatctcctgaccttgtgatccatccgcctcggcctcccaaagtg-tgggattacaggcatgggccgttgcacccggcctc
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45434074  0 +  49145316 C
e rheMac3.chr19              60018300 581 +  64156825 M
e panTro4.chr19              59085538  0 +  63644993 C

a score=34061.000000
s hg38.chr19_GL949751v2_alt    150964 26 +   1002683 -tttttttttctttgtaaagatggagt
s ponAbe2.chr19              55961147 26 +  60714840 -tttttcttcctttgtagagatggagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102727710 23 - 106955855 ----ttttttctttgtatatatggagt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55042318 25 +  59248254 -tt-ttttttctttgtagagatggcgt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47146374 25 +  51301725 -tt-ttttttctttgtagagatggagt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46851581 25 +  50890351 -tt-ttttttctttgtagagatggagt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45434074 26 +  49145316 ttt-ttttttctttgtagagatgtaat
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e rheMac3.chr19              60018300 581 +  64156825 M
e panTro4.chr19              59085538  0 +  63644993 C

a score=443611.000000
s hg38.chr19_GL949751v2_alt    150990 211 +   1002683 cttgctatgttgacctggctggtctcgaactcctgagcttaagtgatcctctcaccttggcctcccaaaatactggaattacagatgtcagccattgcacctggccAACTCTTGTTTTCTTGAGAAGGGAGGACCATTGGCTTTCTGGTTCTTCAAGAGTGCGGAggctgg-g-tgcaatggc--tggcacctgtaatcccagcactttgggagg
s ponAbe2.chr19              55961173 210 +  60714840 cttgctgtgttgccctggctggtctc-aactgctgatcttaagtgatcctctcaccttggcctcccaaaatactggaattacagatgtcagccattgcacctggccAACTCTTGTTTTCTTGAGAAGGGAGGACCATTGGCTTTCTGGTTCTTCAAGAGTGTGGAggctgg-g-tgcaatggc--tggcacctgtaatcccagcactttgggagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102727733 213 - 106955855 cttgctgtgttgccctggctggtctcgaactcctgagcttaagtgatcctctcaccttggcctcccaaaatactggaattacagatgtcagccactgcacctggccAACTCTTGTTTTCTTGAGAAGGGAGGACCGTTGGCTTTCTGGTTCTTCAAGAGTGTGGAggttgg-g-tgcaatggctgtggcacctgtaatcccagcactttgggagg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60018881 199 +  64156825 cttgctgtgttgcccaggctggtctcgaactcctgagcttaagtgatcctctcaccttggcctcccaaaatactggaatta-----------caTTGCACCTGGCCAAGTCCTGTTTTCTTGAGAAGGGAAGACCACTGGTTTTCTGGTTCTTCAAGAGTGTGGAggctgg-g--gcaacggc--tggcgcctgtaatcgtggcactttgggagg
i rheMac3.chr19             M 581 I 1301
s macFas5.chr19              55042343 199 +  59248254 cttgctgtgttgcccaggctggtctcgaactcctgagcttaagtgatcctctcaccttggcctcccaaaatactggaatta-----------caTTGCACCTGGCCAAGTCCTGTTTTCTTGAGAAGGGAAGACCACTGGTTTTCTGGTTCTTCAAGAGTGTGGAggctgg-g--gcaacggc--tggcgcctgtaatcgcggcactttgggagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47146399 199 +  51301725 cttgctgtgttgcccaggctggtctcgaactcctgagcttaagtgatcctctcaccttggcctcccaaaatactggaatta-----------cattgcacctggccaagtcCTGTTTTCTTGAGAAGGGAGGACCACTGGTTTTCTGGTTCTTCAAGAGTGTGGAGGCTGG-G--GCaatggc--tggcacctgtaatcgcagcactttgggagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46851606 200 +  50890351 cttgctgtgttgcccaggctggtctcgaactcctgagcttaagtgatcctctcaccttggcctcccaaaatactggaatta-----------caTTGCACCTGGCCAAGTCCTGTTTTTTTGAGAAGGGAGGACCACTGGTTTTCTGGTTCTTCAAGAGTGTGGAggctggag--gcaacagc--tggcgcctgtaatcgcagcactttgggagg
i chlSab2.chr6              C 0 I 1319
s calJac3.chr22              45434100 201 +  49145316 gttgctgtttt--ccaggctggtcttgaactcctgagcttaagtgatcctctcaccttggcctcccaaagtactggaattacagacgtcagccactgcacctggccAACTCCTGGTATCTTGAGAAGGGAGGACCACTGGCTTTCTGGTTCTTCAGGA---------CCAG-GTTATAgtgcc--ttgcacctgtaatcccagcactttgggagg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e panTro4.chr19              59085538   0 +  63644993 C

a score=2800.000000
s hg38.chr19_GL949751v2_alt    151201 1 +   1002683 c
s ponAbe2.chr19              55961383 1 +  60714840 c
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102727946 1 - 106955855 c
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60020381 1 +  64156825 c
i rheMac3.chr19             I 1301 C 0
s macFas5.chr19              55042542 1 +  59248254 c
i macFas5.chr19             C 0 I 1305
s papAnu2.chr19              47146598 1 +  51301725 c
i papAnu2.chr19             C 0 I 1306
s chlSab2.chr6               46853125 1 +  50890351 c
i chlSab2.chr6              I 1319 C 0
s calJac3.chr22              45434301 1 +  49145316 c
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e panTro4.chr19              59085538 0 +  63644993 C

a score=6790.000000
s hg38.chr19_GL949751v2_alt    151202 3 +   1002683 taa
s ponAbe2.chr19              55961384 3 +  60714840 taa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102727947 3 - 106955855 taa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60020382 3 +  64156825 taa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55043848 3 +  59248254 taa
i macFas5.chr19             I 1305 C 0
s papAnu2.chr19              47147905 3 +  51301725 taa
i papAnu2.chr19             I 1306 C 0
s chlSab2.chr6               46853126 3 +  50890351 taa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45434302 3 +  49145316 tga
i calJac3.chr22             C 0 I 535
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e panTro4.chr19              59085538 0 +  63644993 C

a score=249798.000000
s hg38.chr19_GL949751v2_alt    151205 140 +   1002683 aaatacaaagattagtctgtcatggtagcacgtgcctataatcccagctactaggggggctgagacaggaggattgcttgaacctgggagggagaggttgcagtgagccgagatcacgccactgcacttgagcTGTAAAA
s ponAbe2.chr19              55961387 140 +  60714840 aaatacaaagattagtctggcacggtggcacgtgcctgtaatcccagctactaggggggctgagacaggaggactgcttgaacctgggagggggaggttgcagtgagccgagatcatgccactgcacttcagcTGTAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102727950 137 - 106955855 aaatacaaagattagtctggcatggtgccacgtgcctgtaatcccagctactaggggggctgagac---aggactgcttgaacctgggagggggaggctgcagtgagctgagatcacgccactgcacttcagcTGTAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60020385 140 +  64156825 aaatacaaagattagcctggcatggtagcacgtgcctgtaatcccaggtactaggggggctgaggcaggaggatagcttgaacccgggagggggaggttgcagtgagccgagatcgtgccacttcacttcagcTGTAAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55043851 140 +  59248254 aaatacaaagattagcctggcatggtagcacgtgcctgtaatcccaggtactaggggggctgaggcaggaggatcgcttgaacccgggagggggaggttgcagtgagccgagatcatgccacttcacttcagcTGTAAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47147908 140 +  51301725 aaatacaaagattagcctggcatggtagcatgtgcctgtaatcccaggtactaggggggctgaggcaggaggatcgcttgaacccgggagggggaggttgcagtgagccgagatcatgccacttcacttcagctgtaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46853129 140 +  50890351 aaatacaaagattagcctggcatggtagcacgtgcctggaatcccaggtactaggggggctgaggcaggaggatcgcttgaatccgggagggggaggttgcagtgagccgagatcatgccacttcacttcagcTGTAAAA
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45434305 535 +  49145316 I
e panTro4.chr19              59085538   0 +  63644993 C

a score=1354750.000000
s hg38.chr19_GL949751v2_alt    151345 624 +   1002683 TAAACAAAAACGATGGAtcctgtgcattttaaggtgtttaggagcatccctggcccccacccacgacatccgactagcaccttccagttacaacaacatgtctccagggattgccatgtgtctcctgggggt---gcagcagcagcacagttgcccccagttgagaagcactTGTCTAAACACTGGGGT-------GCTTTGACCTGGCCTCAGCCCCAGAGC-TTTAAGCGTCATC--TATACCTggccagatgcagtggctcatgcttgtaatctcagcactttgggaggctgagatgggaggactgcttggggccaggag-tttgagaccagcctggtcaacacag---tgagacctcatctctatacattttttaaaaagt-aAAAAAAAAATAATAATAATACTTAAAAAATTTTggccgggcatggtgactcacgcctgtaatcccagcacgttgggaggccgaggcacgcggatcacttgaggccaagagttcgag------accagcctggccaacatggtgaaaccctgcgtctactC----------------------------------------------------TTggcacgagaatca----cttgaacccaggagatggaggttgcagtgagctgagatcacaacactgcactccatcctgggtgacagagcATCAAaatactaata
s ponAbe2.chr19              55961527 619 +  60714840 TAAACAAAAACGATGAAtcctgtgcattttaaggtgtttaggagcatccctggcctccccccactacatccgactagcaccttccagttacaacaacatgtctccagggattgccatgtgtctcctgggggt---gcagcagcagcacaattgcccccagttgagaagcactTGTCTAAACACTGGGGT-------GCTTTGACCTGGCCTCAGCCCCAGAGC-TTTAAGTGTCATC--TATACCTggccagatgcagtggctcacgcctgtaatcccagcactttgggaggctgagacgggaggactgcttggggccaggagttttgagaccagcctggtcaacacag---tgagacctcatctctatatattttttaagaagt-aaaaa------aataataataattaaaaaattttggccgggcatggtgactcacgcctgtaatcccagcacgttgggaggccgaggcaggcggatcacttgaggccaagagttcgag------accagcctggccaacatggtgaaaccttgcatctactc----------------------------------------------------ttggcatgagaatca----cttgaacccaagagatggaggttgcagtgagctgagatcacaacactgcactccaccctgggtgacagagcATCAAaataataata
i ponAbe2.chr19             C 0 I 194
s nomLeu3.chr10             102728087 617 - 106955855 GAAACAAAAACAATGAAtcctgtgcattctaaggtgtttaggagcatgcctggcctccacccactacatccgactagccccttccagttacaacagcatgtctccagggactgccatgtgtctcctcggggt---gcagcagcagcacaactgcccccagttgagaagcactTGTCTAAACACTGGGGT-------GCTTTGACCTGACCTCAGCCCCAGAGC-TTTAAGCATCATC--TATACCTggccagatgcagtggctcacgcttgtaatcccagcactttgggaggctgagatgggaggactgcttgaggctaggag-tttgagaccagcctggtcaacacag---cgagacctcatctctatatattttttaaaaggt-taaaa------aa-aaaaTTAATTAAAAAATTTTggccgggcatggtgactcacgcctgtaatcccagcactttcggaggccgaggcaggtggatcacttgaggccaagagttcaag------accagcctggccaacatggtgaaaccctgagtctactc----------------------------------------------------ttggcacgagaatca----cttgaacccaggagatggaggttgcagtgagctgagatcacaacactgcactccaccctgggtgacagagcatcaaaataataata
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60020525 630 +  64156825 TAAACAAAAAGGATGAAtcctgtgcattttaaggtgtttaggagcatccctggcctccacccactacatcccactagcaccttccagttaaaacaaaatgtctccagggatttccacgtgtctcctgggggt---gcagcagcagcacaactgcccccagttgagaagcactTGTGTAAACACTGGGGTGCTCTGGGCTTTGACCTGGCCTCAGCCCCAGAGC-TTTAAGTATCACCAGTATA------cgggcatggtgattcatacctgtaatcccggcactttggcaggctgagatgggaggactgcttggggccaggag-tttgagaacagcctggtcaacacag---cgagacctcatctctctgtattttttaaaaagt--aaaaaaaa--aaaaaaattaattaaaaaattttggccagacatggtgattcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacttgaggccaagagttcgatactagcactagcctggccaacatggcgaaaccctgcatctactc----------------------------------------------------ttggcatgagaatca----cttgaacccaggaaatggaggttgcagtgagctgagatcacaccactgcacttcaccctgggtgacaaagcatcaaaataataata
i rheMac3.chr19             C 0 I 1075
s macFas5.chr19              55043991 631 +  59248254 TAAACAAAAAGGATGAAtcctgtgcattttaaggtgtttaggagcatccctggcctccacccactacatcccactagcaccttccagttaaaacaaaatgtctccagggatttccacgtgtctcctgggggt---gcagcagcagcacaactgcccccagttgagaagcactTGTGTAAACACTGGGGTGCTCTGGGCTTTGACCTGGCCTCAGCCCCAGAGC-TTTAAGTATCACCTGTATACCTggccagatgcagtggctcatgcttgtaatcctggcactttggcaggctgagatgggaggactgcttggggccaggag-tttgagaacagcctggtcaacacag---cgagacctcatctctctgtattttttaaaaagt-aaaaaaaaa--aaAAAAATTAATTAAAAAATTTTggccaggcatggtgattcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacttgaggccaagagttcgag------actagcctggccaacatggcgaaaccctgcatctactc----------------------------------------------------ttggcatgagaatca----cttgaacccaggaaatggaggttgcagtgagctgagatcacaccactgcacttcaccctgggtgacaaagcatcaaaataataata
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47148048 632 +  51301725 taaacaaaaaggatgAATCCTGCGCATTTTAAGGTGTTTAggagcatccctggcctccacccactacaTCCCACTAGCACCTTCCAGTTAAAACAAAGTGTCTCCAGGGATTGCCACGTGTCTCCTGGGGGT---GCAGCAGCAGCACAACTGCCCCCAGTTGAGAAGCACTTGTGTAAACACTGGGGTGCTCTGGGCTTTGACCTGGCCTCAGCCCCAGAGC-TTTAAGTATCATCTATATacctggccagatgcagtggctcacgcttgtaatcccggcactttgggaggctgagatgggaggactgcttggggccaggag-tttgcgaACAGCCTGGTtaacacag---cgagacctcatctctctatattttttaaaaagtaaaaaaaaaa--aaaaaaattaattaaaaaattttggccaggcatggtgattcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacttgaggccaagagttcgag------actagcctggccaacatggcgaaaccctgcgtCTACTC----------------------------------------------------ttggcatgagaatca----cttgaacccaggaaatggaggttgcagtgagctgagatcacaccactgcacttcaccctgggtgacaaagcatcgaaataatacaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46853269 635 +  50890351 TAAACAAAAAGGATGAAtcctgtgcattttaaggtgtttaggagcatccctggcctccactcactacatcccactagcaccttccagttaaaacaaaatgtctccagggattgccacgtgtctcctgggggt---gcagcagcagcacaattgcccccagttgagaagcactTGTGTAAACACTGGGGTGCTCTGGGCTTTGACCTGGCCTCAGCCCCAGAGC-TTTAAGTATCATCTATATACCTggccagatgcagtggctcacgcttgtaatcccggcactttgggaggctgagatgggaggactgcttggggccaggag-tttgagaacagcctggtcagcacag---cgagacctcatctctctatattttttaaaaagt-gaaaaaaaa--aaaAAAATTAATTAAAAAATTTTggccaggcatggtgactcacgcctgtaaccccagcactttgggaggccgaggcaggcggatcacttgaggccaagagttcgag------actagcctggccaacatggcgaaaccctgcgtctactc----------------------------------------------------ttggcatgagaatcatttgtttgaacccaggagatggaggttgcagtgagctgagatcacaccactgcacttcaccctgggtgacagagcATCGAaataataata
i chlSab2.chr6              C 0 I 636
s calJac3.chr22              45434840 676 +  49145316 TAAAC---AAGGATGAgtcctgtgcgtg-taaggtgcttaggagca-ctgtgggctccacccactccatgcccctagtcccttccagttacaacaaaacgtctccaggtattgccccgcgtctcctggaggtgcagcagcagcagcagaatttcccccagttgagaagcgctTGTC-AAACACTGAGGTGCTCTGGGCTTTGATGTGGCCTCAGCCCCAGAGCTTTTAAGTATCATC--TATACCTggctgggcacagtggctcatgcttgcagtcccagcgctttgggaggctgagatgggaggactgcttggggccaggac-tttgagaccagcctagtcaacacaggcctaagtcaacatctctatatattttttaaaaact-aAAAA------AAAAAAATTAATTTAAAAACTTTggtcaggcttggtggctcaagcctgtaattccagcacttcgagaggctgaggtaggtggatcacttgaggccaagagtttgag------actagcctggccaacatggtgaaaccccacatctactaaagataaaaaaattagctgggcgtggtgtcgcacacctgtaatcccagctagttggcaggagaatca----cttgaacccaggatatggaagctgcagtgagctgacgtcgtgccactgcactccaccctggg-gacaaagcgtcaaaa-aataata
i calJac3.chr22             I 535 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e panTro4.chr19              59085538   0 +  63644993 C

a score=-570.000000
s hg38.chr19_GL949751v2_alt    151969 7 +   1002683 ctaatac-
s nomLeu3.chr10             102728704 6 - 106955855 ataata--
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55044622 6 +  59248254 acaata--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47148680 5 +  51301725 -caata--
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45435516 5 +  49145316 --aata-c
i calJac3.chr22             C 0 I 748
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55962146 194 +  60714840 I
e chlSab2.chr6               46853904 636 +  50890351 I
e rheMac3.chr19              60021155 1075 +  64156825 I
e panTro4.chr19              59085538 0 +  63644993 C

a score=4755.000000
s hg38.chr19_GL949751v2_alt    151976 11 +   1002683 taatactaata
s nomLeu3.chr10             102728710 10 - 106955855 -aaTAATAATA
i nomLeu3.chr10             C 0 I 2356
s macFas5.chr19              55044628 10 +  59248254 -aataataata
i macFas5.chr19             C 0 I 557
s papAnu2.chr19              47148685 10 +  51301725 -aataataata
i papAnu2.chr19             C 0 I 171
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55962146 194 +  60714840 I
e calJac3.chr22              45435521 748 +  49145316 I
e chlSab2.chr6               46853904 636 +  50890351 I
e rheMac3.chr19              60021155 1075 +  64156825 I
e panTro4.chr19              59085538  0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    151987 29 +   1002683 ctaatactaatactaatactaataataat
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e ponAbe2.chr19              55962146 194 +  60714840 I
e calJac3.chr22              45435521 748 +  49145316 I
e nomLeu3.chr10             102728720 2356 - 106955855 I
e chlSab2.chr6               46853904 636 +  50890351 I
e papAnu2.chr19              47148695 171 +  51301725 I
e macFas5.chr19              55044638 557 +  59248254 I
e rheMac3.chr19              60021155 1075 +  64156825 I
e panTro4.chr19              59085538  0 +  63644993 C

a score=16934.000000
s hg38.chr19_GL949751v2_alt    152016 106 +   1002683 aTCCTTCTTACTCCCAAAACTTACCCTTCCTGGGTCTTCCCCTTCCACATTTATCTAATTAAATTAAATTAAATTAATAATTATTTTTGTTTGttttttgtgtttt
s ponAbe2.chr19              55962340  99 +  60714840 atccttcttactcccaaaacttactcctcctgggtcttccccttctACCTTTATCTaattaaattaaattaaattaa--attaTTTTTGtttgttgttt-----tt
i ponAbe2.chr19             I 194 C 0
s papAnu2.chr19              47148866  94 +  51301725 ATCCTTCTTACTCCCAAAACTTACCCCTGCTGGGTCTTCCCCTTCCgcctt----taatttaatttaatt-gattaa--ttaattttggcttttttact-----tt
i papAnu2.chr19             I 171 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45435521 748 +  49145316 I
e nomLeu3.chr10             102728720 2356 - 106955855 I
e chlSab2.chr6               46853904 636 +  50890351 I
e macFas5.chr19              55044638 557 +  59248254 I
e rheMac3.chr19              60021155 1075 +  64156825 I
e panTro4.chr19              59085538   0 +  63644993 C

a score=1113.000000
s hg38.chr19_GL949751v2_alt    152122 4 +   1002683 tttg
s ponAbe2.chr19              55962439 4 +  60714840 tttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102731076 4 - 106955855 TCCG
i nomLeu3.chr10             I 2356 C 0
s papAnu2.chr19              47148960 4 +  51301725 ttta
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45435521 748 +  49145316 I
e chlSab2.chr6               46853904 636 +  50890351 I
e macFas5.chr19              55044638 557 +  59248254 I
e rheMac3.chr19              60021155 1075 +  64156825 I
e panTro4.chr19              59085538 0 +  63644993 C

a score=135518.000000
s hg38.chr19_GL949751v2_alt    152126 202 +   1002683 tttgtttgtttttgagacagagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgtctcccgggttcacaccattctcctgcctcagcctccccagtagctgggactacatgcacccgccgccacacccggctaattttttgtatttttagtagagacagggtttcaccgtgtta
s ponAbe2.chr19              55962443 195 +  60714840 tttgtttgtttttgagaaagagtctcgctctatcacccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcccgggttcacaccattctcctgcctcagcctcccgagca-------ctacaggcgcccgccgccacactcggctaattttttgtatttttagtagagatggggtttcaccgtgtta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102731080 202 - 106955855 TTAGtttgtttttgagacggagtctcgccctgtcacccacgctggagtgcagtgtcgcgatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggcgcccgctgccacacccggctaattttttgtatttttagtagagatggggtttcaccgtgtta
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55045195 186 +  59248254 tttattttattttgagacgaagtttcgctctgttgcccag----------------gtgatctcagctcactgcaacctctgcctcttgggttcaagtgattctcttgcctcagcctcctgagtagctgggattactggcgcctgccaccatgcccagctaattttctgtatttttagtagagaaggggtttctccatattg
i macFas5.chr19             I 557 C 0
s papAnu2.chr19              47148964 195 +  51301725 ------tttttttgagatagagtctt-ttctgttacccaggctggagtgtagtggcgcgatctcagctcaccgcaagctctgcctcctgggttcatgctgttctcctgcctcagcctcccgagcagctgggactacaggcgcccgccacctcgcctggctaattttttgtatttttagtagagacggggtttcaccatgtta
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45435521 748 +  49145316 I
e chlSab2.chr6               46853904 636 +  50890351 I
e rheMac3.chr19              60021155 1075 +  64156825 I
e panTro4.chr19              59085538   0 +  63644993 C

a score=103734.000000
s hg38.chr19_GL949751v2_alt    152328  95 +   1002683 gccaggatggtcttgatc------tcctgacctt---gtgacccacccaccttggcctcccaaattgctgggattataggcatgagccaccgtgcccggc------------cTAt
s panTro4.chr19              59085538  95 +  63644993 gccaggatggtcttgatc------tcctgacctt---gtgatccacccaccttggcctcccaaattgctgggattataggcatgagccaccgcgcccggc------------cTAt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55962638  92 +  60714840 gccaggatggtcttgatc------tcctgacctt---gtgatccacccaccttggcctcccaaagtgctgggattataggcatgagccaccgcgcccggc------------c---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102731282  95 - 106955855 gccaggatggtctcgatc------tcctgacctt---gtgatccacccacctcggcctcccaaaatgctgggattataggcatgagccaccgtgcccggc------------cTAt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55045381 116 +  59248254 cccaggctggtcttcaccatattgccctgacctcaaagtgatccacctgcctgggcctcccaaattgctgggattacaggtgtgagccaccgcgcctggcTATGAGtttctacttc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47149159  95 +  51301725 gccaggatggtcttgatc------tcctgacctt---gtgatccgcccgtctcggcctcccaaagtgctgggattacagacgtgagccaccgcgcccagc------------ctgt
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e calJac3.chr22              45435521 748 +  49145316 I
e chlSab2.chr6               46853904 636 +  50890351 I
e rheMac3.chr19              60021155 1075 +  64156825 I

a score=415521.000000
s hg38.chr19_GL949751v2_alt    152423 328 +   1002683 tttatttta--ttttgagacaaagtctctctctgttgcccaggt----------------gaccttggctcaccgcaacctccgcctcccgggttcaag-tgattctcttgcctcagcctccctagtagctgggattataggcgcccgccaccatgcctagctaattttttgtatttttagtagagaaggggtttctccatattgcccaggctggtcttcaccatattgccctgacctcaagatgatccacctgcctgggcctcccaaactgctgggattacaagtgtgagccaccatgcctggcTATGAGTT-CTACTTCTGttttttttttttttttttttttttt
s panTro4.chr19              59085633 317 +  63644993 tttatttta--ttttgagacaaagtctctctctgttgcccaggt----------------gacctcg-ctcactgcaacctccgcctcccgggttcaag-tgattctcttgcctcagcctccctagtagctgggattataggcgcccgccaccatgcctagctaattttttgtatttttagtagagaaggggtttctccatattgcccaggctggtcttcaccatattgccctgacctcaagatgatccacctgcctgggcctcccaaactgctgggattacaagtgtgagccaccacgcctggcTATGAGTTTCTACttct-----------ttttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55962730 308 +  60714840 --TAtttta--ttttgagacgaagtcttgctctgttgcccaggt----------------gacctcggctcactgcaacctctgcctcccgggttcaag-tgattctcttgcctcagcctccctagtagctgggattataggcgcccgccaccatgcctagctaattttttgtatttttagtagagaaggggtttcaccatattgcccaggctagtcttcaccatattgccctgacctcaaggtgatccacctgcctgggcc-cccaaactgctgggattacaagtgtgagccactgcacctggctATGAGtttctacttct------------------ttttttgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102731377 304 - 106955855 tttatttta--ttttgagacgaagtctcgctctattgcccaggt----------------gacctcggctcactgcaacttccgcctcccgggttcaag-tgattctcttgcctcagcttccctagtagctgggattataggcgcccgccaccacgcccggctaatttattgtatttttagtagagacggggtttctccatattgcccaggctggtcttcatcatattgccttgacctcaaggtgatccacctgcctgggcctcccaaactgctgggattacaagtgtgagccacc-------gcTATGAGtttctactttt------------------tttttttt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55045497 294 +  59248254 ttttttttt--ttttgagacggagtctcgctctgttgcctaggctggagtgcagtggcgagatgccggctccctgcaacctccacctcccgggttcaag-ccattctcctgcctcagcctcccgagtagctgggactacaggtgcgcaccaccacgcccaggtaattttttgtatttttagtagagatgtggttgcaccatgttaacaaggatggtctcaatc------tcctgacctc---gtgatccgcctgcctcggcttcccaaagtgttgggattacaggcgtgagccaccacgcccggcc------------------------------------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47149254 311 +  51301725 tttatttta--ttttgagacgaagtttcgctctgttgcccaggt----------------gacctcggctcactgcaacctccgcctcttgggttcaag-tgattctcttgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccagctaattttctgtatttttagtagagaaggggtttctccatattgcccaggctggtcttcaccATATTGccctgacctcaaagtgatccacctgcctgggcctcccaaactgctgggattacaggtgtgagccaccgcgcctggctatgagtttctacttct------------------tttttttt
i papAnu2.chr19             C 0 I 2
s calJac3.chr22              45436269 268 +  49145316 tttattttagtttttgggatgaagtgtcgctcagtcgcccaggc----------------gacctcagctcactgcaacctccacctcctgggttcaagttgattctcttccttcagcctcctgtgtagctgggataacaggcaaccgtcactacgcccagctaactttttgtatttttagtagagaaggggttgcaccatattg------------------------ccctgacctc-aggcgattgacttgcctgggctacccaaaaggctgggattacaggcatgaaccacc-------------------TACtctt------------------ttgttc--
i calJac3.chr22             I 748 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e chlSab2.chr6               46853904 636 +  50890351 I
e rheMac3.chr19              60021155 1075 +  64156825 I

a score=52018.000000
s hg38.chr19_GL949751v2_alt    152751 24 +   1002683 ttttttttttgagacggagtctcg
s panTro4.chr19              59085950 24 +  63644993 tttcttttttgagacggagtctcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55963038 24 +  60714840 ttttttttttgagacggagtgtcg
i ponAbe2.chr19             C 0 I 2
s nomLeu3.chr10             102731681 24 - 106955855 ttttttttttgagacagagtctcg
i nomLeu3.chr10             C 0 I 2
s rheMac3.chr19              60022230 24 +  64156825 tttttcttttgagacaaagtctcg
i rheMac3.chr19             I 1075 I 2
s macFas5.chr19              55045791 24 +  59248254 tttttcttttgagacaaagtctcg
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47149567 24 +  51301725 ttttttttttgagacggagtctcg
i papAnu2.chr19             I 2 I 293
s calJac3.chr22              45436537 24 +  49145316 gtttgtttttgagacagagtcttg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e chlSab2.chr6               46853904 636 +  50890351 I

a score=78679.000000
s hg38.chr19_GL949751v2_alt    152775 42 +   1002683 ctgtcgcccaggctggagtgcagtggcgagatcccagctccc
s panTro4.chr19              59085974 42 +  63644993 ctgtcgcccaggttgcagtgcagtggcgacatcccggctccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55963064 42 +  60714840 ctgtcgcccaggctggagtgcagtggcgagatcctggttccc
i ponAbe2.chr19             I 2 C 0
s nomLeu3.chr10             102731707 42 - 106955855 ctgttgcccagactggagtgcagtggcgagatcctggctccc
i nomLeu3.chr10             I 2 C 0
s rheMac3.chr19              60022256 42 +  64156825 ctgtcgctcagggtggagtgcagtggcatgatctcaggtcac
i rheMac3.chr19             I 2 C 0
s macFas5.chr19              55045817 42 +  59248254 ctgtcgctcagggtggagtgcagtggcatgatctcaggtcac
i macFas5.chr19             I 2 C 0
s papAnu2.chr19              47149884 42 +  51301725 ctgtcactcaaggtggagtgcagtggcatgatctcaggtcac
i papAnu2.chr19             I 293 C 0
s calJac3.chr22              45436561 41 +  49145316 ctgtcgc-caggctggagtgcagtggcacaatctcggctcac
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I
e chlSab2.chr6               46853904 636 +  50890351 I

a score=403425.000000
s hg38.chr19_GL949751v2_alt    152817 149 +   1002683 tgcaacctctgcctcccgggttcaagccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacaccagggtaa-ttttttgtatttttagtagagacagcatgtcaccatgttggtcaggctggtctcgaac
s panTro4.chr19              59086016 149 +  63644993 tgcaacctctgcctcccaggttcaggccattctcctgccccagcctcccgagtagctgggactacaggcacgcgccaccacaccagggtaa-ttttttgtatttttagtagagacagcgtgtcaccatgttggtcaggctggtctcgaac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55963106 149 +  60714840 tgcaacctctgcctcccgggttcaagccattctcctgcctcagcctcccaagtagctgggactacaggcatgcagcaccacacctggctaa-ttttttgtatttttagtagagacagcgtttcaccatgttggtcaggctggtctcgaac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102731749 150 - 106955855 tgcaacctccgcctcccgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggcatgcaccaccacaccagggtaatttttttgtatttttagtagagacagcgtttcaccatgttggtcaggctggtcttgaac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60022298 147 +  64156825 tgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcacaagtagctgggattacaggtgcgcacca-cacgtctggctaa--tttttggatttttagtagagacagggtttcaccatgctggttaggctggtcttgaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55045859 147 +  59248254 tgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcacaagtagctgggattacaggtgcgcacca-cacgtctggctaa--tttttgcatttttagtagagacagggtttcaccatgttggttaggctggtcttgaac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47149926 147 +  51301725 tgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcacaagtagctgggattacaggtgcgcacca-cacgtctggctaa--tttttgcatttttagtagagacagggtttcaccatgttggttaggctggtcttgaac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46854540 147 +  50890351 tgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcaccagtagctgggattacaggtgcgcacca-cacgtctggctaa--tttttgcatttttagtagagacagggtttcaccatgttggttaggctggtcttgaac
i chlSab2.chr6              I 636 C 0
s calJac3.chr22              45436602 148 +  49145316 tgtaacctctgcctcccaggttcaagcgattttcctgcctcagcctcctgagtagcttagactacaggcgcgcgccaccatgcccagctaa--tttttgtatttttggtagagacagagtttcaccatgttggccaagatggtctcgatc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3678989 4687 + 145441459 I
e canFam3.chr1               19639829 2038 - 122678785 I

a score=1580714.000000
s hg38.chr19_GL949751v2_alt    152966 499 +   1002683 tcctgacctcatgatccacctgcttgggcctcccaaagtgctggg--attccaggc--gtgagctgccgcacccgg-c-tgagtttctgcttctaaaggctgcacagataacagtgtcaagcacagagtctccactcgagaaatattggAAGAATGAAAAACaataaaaatgaatacacagcacgcacttacctgtcaggcctcacattaaatacatttcacattttatcacatttagtccttctatctacctatgaaaccagtaataaatagcattcactccattcaacacttgaggcaactaagaggtcaactaactcctcaaggtttctccataacctggacggccaagattccaggaaggctggctattgagtccACAGGACTCAGTACATTGCTTCTGCTGAGTGAGGctgactttacagaagtagcaa-------------ctgaggccccgagagggggaacgattttacacc----ggcatgctgccactataattagaggcagggcaaaacca
s panTro4.chr19              59086165 512 +  63644993 ccctgacctcatgatccacctgcttgggcctcccaaagtgctggg--attccaggc--atgagctgccgcgcccgg-c-tgagtttctgcttctaaaggctgcacagataacagtgtcaagcacagagtctccactcgagaaatattggAAGAATGAAAAACaataaaaatgaatacatagcacgcacttacctgtcaggcctcacattaaatacatttcacattttatcacatttagtccttctatctacctatgaaaccagtaataaatagcattcactccattcaacacttgaggcaactaagaggtcaactaactcctcaaggtgtctccgtaacctggacggccaagattccaggaaggctggctattgagtccACAGGACTCAGTACATTGCTTCTGCTGAGTGAGGCTGACTTTACAGAAGTAGAAAacagaagtagaaactgaggccccgagagggggaacgattttacacc----ggcatgctgccactataattagaggcagggcAAAACCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55963255 500 +  60714840 tcctgacctcataatccacctgcttgggcctcccaaagtgctggg--attccagga--gtgagctgccacgcccggcc-tgagtttctgcttctaaaggctgcacagataacaatgtcaagcacagagtctccactcaagaaatattggAAGAATGAAAAACaataaaaatgaatacatagcacgcacttacctgtcaggcctcacattaaatacacttcacattttatcacatttagtccttctatctacccgtgaaaccagtaataaatagcattaactccatttaacacttgaggcaactaagaggtcaactaactcctcaaggtttctccataacctggacggccaagattccaggaaggctggctattgagtccACAAGACTCAGTACATTGCTTCTGTTGAGTCAGGctgactttacagaagtagaaa-------------cggaggccccgagagggggaacgattttacacc----agcatgctgccactataattagaggcagggcAAAACCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102731899 498 - 106955855 tcctgacctcatgatccacctgcttgggcctcccaaaatgctggg--attccaggc--ctgagctgtcgcgcccggcc-TGAGTTTCTGCTTCTAAAGGCTGCACAGATAATAATGTCAAGCACAGAGTCTCCATTCAATAAATATT-GAAGAATGAAAAACaataaaaatgaatacatagcacgcacttacctgtcatgcctcacattaaatacatttcacattttatcacattcagtccttctatctacctatgaaaccagtaataaatagcattaactccatttaacacttgaggaaactaagaggtcaactaactcctcaaggtttctccataacctggacagccaagattccaggaa-gctgcctattgagtccACAGGACTCAGTACATTGCTTCTGTTGAGGGAGGctgactttacagaagtagaaa-------------ctgaggcccggagagggggaacgattttacacc----agcatgcggccactataattagaggcacggtaaaacca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60022445 498 +  64156825 tcctgacctcatgatccacccacttgggcctcccaaagtgctggg--attccaggc--gtgagctgccgtgcctggcc-TGAGTTTCTGCTTCTAAAGGCTGCACAGATAACAATATTAAGCGCAGAATCTCCACTCAAGAAATACTGGAAGAATGAAAAACaataaaaacgaatacgtagcacgcacttacctgtcaggcctcacattaaatacatttcacattttatcgcatttagttcttctatctacctatgacaccagtaataaatagcattcactccatttaacacttgaggcaactaagaggtcaactaactcctcaaggtttctccataacctggatggccaagattccaggaaggctggctgttgagtccACAGGACTCAGTACATTGCTTCTGTCAAGTGAGGctgactttacagaagtagaaa-------------ctgaggcccagagagggggaatggttttacacc----agcatgctgccac--taatcagaggcagggcaaaacca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55046006 498 +  59248254 tcctgacctcatgatccacccacttgggcctcccaaagtgctggg--attccaggc--gtgagctgccgtgcctggcc-TGAGTTTCTGCTTCTAAAGGCTGCACAGATAACAATATTAAGCGCAGAGTCTCCACTCAAGAAATACTGGAAGAATGAAAAACaataaaaacgaatacgtagcacgcacttacctgtcaggcctcacattaaatacatttcacattttatcgcatttagtccttctatctacctatgacaccagtaataaatagcattcactccatttaacacttgaggcaactaagaggtcaactaactcctcaaggtttctccataacctggatggccaagattccaggaaggctggctgttgagtccACAGGACTCAGTACATTGCTTCTGTCAAGTGAGGctgactttacagaagtagaaa-------------ctgaggcccagagagggggaatggttttacacc----agcatgctgccac--taatcagaggcagggcaaaacca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47150073 498 +  51301725 tcctgacctcatgatccacccgcttgggcctcccaaagtgctggg--attccaggc--gcgaGCTGCCGTGCCCGGCC-TGAGTTTCTGCTTCTAAAGGCTGCACAGATAACAATATCAAGCGCAGAGTCTCCACTCAAGAAATActagaagaatgaaaaacaataaaaacgaATACGTAGCACGCACTTACCTGTCAGGCCTCACATTAAATACATTTCACATTTTATCGCATTTAGTCCTTCTATCTACCTATGACACCAGTAATAAATAGTATTAACTCCATTTAACACTTGAGGCAACTAAGAGGTCAACTAACTCCTCAAGGTTTCTTCATAACCTGGATGGCCAAGATTCCAGGAAGGCTGGCTGTTGAGTCCACAGGACTCAGTACATTGCTTCTGTCAAGTGAGGCTGACTTTACAGAagtagaaa-------------ctgaggcccagagagggggaATGGTTTTACACC----AGCATGCTGCCAC--TAATCAGAGGCAGGGCAAAACCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46854687 498 +  50890351 tcctgacctcgtgatccacccgcctgggcctcccaaagtgctggg--attccaggc--gcgagctgccgtgcccggcc-TGAGTTTCTGCTTCTAAAGGCTGCACAGATAACAATATCAAGTGCAGAGTCTCCACTCAAGAAATACTGGAAGACTGAAAAACaataaaaacgaatatgtagcatgcacttacctgtcaggcctcacattaaatacatttcacattttatcgcatttagtcattctatctacctatgacaccagtaataaatagcattaactccatttaacacttgaggcaactaagaagttaactaactcctcaaggtttctccataacctggatggccaagattccaggaaggctggctgttgagtccACAGGACTCAGTACATTGCTTCTGTCAAGTGAGGctgactttacagaagtagaaa-------------ctgaggcccagagaggcgggatggttttacacc----agcatgctgccac--taatcagaggcagggcaaaacca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45436750 487 +  49145316 tcttgacctcgtgatccacccgcctcggcctcccaaagtgctggg--attacgggc--ttgggc--caAAGCACGGCCATGAGTTTCTACTTAC-AAGGCTGCGCCAAAAACAACGTCTAGC----AGTCTTCACTCAAGAAACATTGGAAGAATGAAAAAAaataaaaactaatagatggcaggcacttacctgtcaggcctcacattaaatacatttcacattctatcgcatttaatcattttatctacctatgaaaccagtaataaaaagcattaactccgttgaatattcgaggcaaccaagaggtcaactaacttctcagggtttctccatcacctagacggctgaaattccaggaaggctggctactgagtccACAGGTCTCAG----TTGCTTCTGTAGACTAAGGctgactttacagaagtagaaa-------------ccgaggctccatgatggggaacta-tttacacc----agcgtgctgccac--taattagaggcagggcaaaacca
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19641867 472 - 122678785 TCCTGACCTCAT-------CTGCT---GGTTCTGGGAAagctgagtaacactaggcaggttacctaaccctctgagcc-tcag-ttctacatcataaggttgtaaacatagcagtatctggcacaaagttttcactcaagaaatataagatgaatgatggaa---aAAATCTAATGTATGGT-CACACCCACCTGGCGGGCCCCACAGTGACTACATTTCACACTttatctcccttcatcctcacatcaaactatgaagcaggtaac----atcatgacccccattcaggagttgaggacac----aggtcagctcattcattaaggtttctctgtagttggtagggccaagattccagaaagtctgacca--gagtccatAGGATTCAGTACATTGCTTCTGTCGAATGAGGTTGACAGGacggaagtagaaa-------------ctgaggcccagagagggggaatgatttacctcccagaggaatgc--------gaatcaatggcagggcaaca---
i canFam3.chr1              I 2038 C 0
e mm10.chr7                   3678989 4687 + 145441459 I

a score=5011941.000000
s hg38.chr19_GL949751v2_alt    153465 1304 +   1002683 ggctaaacaaactacaattcccatgAGCCTCCGGGGGCAGGGGCCCAGCCAGGGACGCTGCAGGCTACCCTGG----GGCCTGCTGGGAGATGTAGTTCTGCAGTGTCACCTGAGACTGGGCGGGCTCACTCACCGCAGGACATAGGAACGGGCAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCTGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAAGGAAGCCGCCTTCTCCGGACT-------------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCCTGCTAGTGTCCCAGCCCCGGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCCTCTGGCTGTCAGACTTGCTAGGGCAGCAAGGGAGGGTGGCCCAGAGGGTGCCTGT--AGGGTAGGAAGGTGGGTGG-GCTGGGTGGTACAGTTCACTGACAATGGGGTTCTTCTTCTTTTGGTACCTAATGGGGCCCGCCACAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TT-AGCAACCAAACTCAG-TATATTCAGAGAAGCCGCCAAGGATGGTCCCTTCTAAATTGTC-GGACACTGCAGTTGCCAGGGAAGTTGTGGTTATCATCCCTAATAACAAGGTGCTTCACGGTTGCTAGGGAGATGTTCCAGGCGCCAGTGGGGTCCCCATGATCTTTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAATGCCTAGGATGTTTAGAAAGG-CTTT---TAGGAAGGGGCTTTT----TTCCTGGTCGCAGT-GATTATTGGAGAAGTGTCACCTCTAGCAATA-CAGTGGCTCCCTCATCACTCATGTCGACAGCCCCAGCAGTGGGAAACACT----GGCCCATATGAAGCCTTGGTGGCCTCTGATGACAGGAGGGGAGCCATCCTTTAGGAGTGAGGACCGAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGCTTTACTAGGGGG-ACATCCTCTCTCTAGCAGCTGGAGGTCAGGGCACGGTTATTAGGGCAGTGGTAACAAATTCCCGTGGGGGT-------GTCACTA-CCCCCACAACAGAATGGCAGTTTGTGACGACTAGGGG----A-----CAACCCTAGCAGGGAGTAGTAGTTCATCATTTACATCAACAGGCTGTTCCCCCAGCCGCAGTCCAAGCCCCTGG-GGGAAGGCTGACTGCAGCTGTCAGGAACACAAGGGCAGTCTACTCCTGGTTGCCGG
s panTro4.chr19              59086677 1303 +  63644993 GGCTAAACAAACTACAATTCCCATGAGCCTCCGGGG-CAGGGGCCCAGCCAGGGACACTGCAGGCTACCCTGG----GGCCTGCTGGGAGATGTAGTTCCGCAGTGTCACCTGAGACTGGGCGGGCTCACTCACCGCAGGACATAGGAACGGGTAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCTGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAAGGAAGCCGCCTTCTCCGGACT-------------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCCTGCTAGTGTCCCAGCCCCGGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCCTCTGGCTGTCAGACTTGCTAGGGCAACAAGGGAGGGTGGCCCAGAGGGTGCCTGT--AGGGGAGGAAGGTGGGTGG-GCTGGGTGGTACAGTTCACTGACAATGGGGTTCTTCTTCTTTTGGTACCTAATGGGGCCCACCACAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TT-AGCAACCAAGCTCAG-TATATTCAGAGAAGCCGCCAAGGATGGTCCCTTCTAAATTGTC-GGACACTGCAGTTGCCAGGGAAGTTGTGGTTATCATCCCTAATAACAAGGTGCTTCACGGTTGCTAGGGAGATGTTCCAGGCGCCAGTGGGGTCCCCATGATCTTTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAAGGCCTAGGATGTTTAGAAAGG-CTTT---TAGAAAGGGGCTTTT----TTCCTGGTCGCAGT-GATTATTGGAGAAGTGTCACCTCTAGCAATA-CAGTGGCTCCCTCATCACTCATGTCGACAGCCCCAGCAGTGGGAAACATT----GGCCCATATGAAGCCTTGGTGGCCTCTGATGACAGGAGGGGAGCCATCCTTTAGGAGTGAGGACCGAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGCTTTACTAGGGGG-ACATCCTCTCTCTAGCAGCTGGAGGTCAGGGCACGGTTATTAGGGCAGTGGTAACAAATTCACGTGGGGGT-------GTCACTA-CCCCCACAACAGAATGGCAGTTTGTGACGACTAGGGG----A-----CAACCCTAGCAGGGAGTAGTAGTTCATCATTTACATCAACAGGCTGTTCCCCCAGCCGCAGTCCAAGCCCCTGG-GGGAAGGCTGACTGCAGCTGTCAGGAACACAAGGGCAGTCTACTCCTGGTTGCCGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55963755 1304 +  60714840 GGCTAAACAAACTACAATTCCCATGAGCCTCCGGGG-CAGGGGCCCAGCCAGGGAAGCTGCAGGCTACCCTGG----GGCCTGCTGGTAGATGTAGTTCTGCAGTGTCACCTGAGGCTGGGAGGGCTGACTCACCGCAGGACGTAGGAACGGGCAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCTGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAAGGAAGCCGCCTTCTCCGGACTGG-----------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCGCTCCCAACGCCTGCTAGTGTCCCAGCCCCAGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCCTCTGGCTGTCAGAGTTGCTAGGGCAACAAGGGAGGGTGGCC--GAGGGTGCCTGC--AGGGGGGGAAGATGGGTGG-GCCGGGTGCTACAGTTCACTGACAATGGGGTTCTTCTTCTTTTGGTACCTAATGGGGCCTGCCACAGCCATGAAAAGCCTTGAAGGGCTATAGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------GT-AGCAACCAAGCTCAG-TATATTCAGAGAAGCCTTCAAGGATGGTCCCTTCTAAATTGTG-GAACACTGCAGTTGCCAGGGAAGTTGTGGTTATCATCCCTAATAACAAGGTGCTTCACGGTTGCTAGGGAGATGTTCCAGGCACCAGTGGGGTCCCCATGATCTTTGTTGCTAAGGAAAAGGTATTCCTTAGCAACAAGGCCTAGGATATTTAGAAAGG-CTTT---TAGAAAGGGGCTTTT----TTCCTGGTCGCAGT-GACTGTCGGAGAAGTGTCGCCTCTAGCAATA-CAGTGGCTCCCTCATCACTGGTGTCGACAGCCCCAGCAGTGGCAAACACT----GGCCCATATGAAGCCTTGGTGGCGTCTGATGACGGGAAGGGAGCCATCCTTTAGGGGTGAGGACCGAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGCTTTACTAGGGGG-ACATCCTCTCTCTAGCAGCTGGAGGTCAGGGCACGGTTATTAGGGCAGTGGTAACAAAGTCACGTGGGGGT-------GTCACTACCCCCCACAACAGAATGGCAGTTTGTGACGACTAGGGG----A-----CAACCCTAGCAGGGAGTAGTAGTTCATCATTTACATCAACAGGCTGTTCCCCCAGCCGCAGTCCAAGCCCCTGA-GGGAAAGCTGACTGCAGCTGCCAGGAACACAAGGGCAGTCTACTCCCGGTTGCCGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102732397 1296 - 106955855 ggctaaacaaactacaattcccatgagcttccGGAG-CAGGGGCCCAGCCAGGGGAGCTGCAGGCTACCCTGG----GGCCTGCTGGGAGATGTAGTTCTGCAGTGTCACCTGAGGCTGGGCGGGCTCACTCACCGCAGGACATAGGAACGGGTAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCTGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAAGGAAGCCGCCTTCTCCGGACT-------------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGATGCCTGCTAGTGTCCCAGCCCCGGATGCTAACGAAGGGATCCTGGCCAGGCAATCGCCCTCTGGCTGTCAGACTTGCTAGGGCAACAAGGGAGGGTGGCCCAGAGGGTGCCTGT--AAGGGAGGAAGATGGGTGG-GCCGGGTGGTACAGTTCACTGACAATGGGGTTCTTCCTCTTTTGCTACCTAATAGGGCCTGCCACAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TT-AGCAACCGAGCTCAG-TATATTCAGAGAAGCCTCCAAGGATGGTCCCTTCTAAATTGTC-AGACACTGCAGTTGCCAGGGAAGTTGTGGTTATCATCCCTAATAACAAGGTGCTTCACGGTTGCTAGGGAGATGTTCCAGGCGCCAGTGGGGTCCCTATGATCTTTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAAGGCCTAGGATGTTTAGAAAGG-CTTT---TAGAAAGGGGCTTTC----TTCCTGGGCGCAGT-GATTGTTGGAGAAGTGTCGCCTCTAGCAATA-CAGTGGCTCCCTCATCACTTGTGTCGACAGCCCCAGCACTGGGAAACATT----GGCCCATATGAAGCCTTGGTGGCCTCTGATGACGGGAGGGGAGCCATCCTTTACGGGTGAGGACCGAACAGATTTAGAAAAACCTTCAACTCCTGCTTGGCTTTACTAGGGGG--CATCCTCTCTCTAGCAGCTGGAGGTCAGGGCACGGTTATTAGGGCAGTGGTAACAAATTCACGTGGGGCT-------GTCACTA-CCCCCACAACAGAATGGCAGTTTGT---GACTAGGGG----C-----CAACCCTAGCAGGG---AGTAGTTCATCATTTACATCAACGGGCTGTTCCCCCAGCCGCAGTCCAAGCCCCTGG-GGAAAGGCTGACTGCAGCTGCCAGGAACAGAAGGGCAGTCTACTCCTGGCTGCCGG
i nomLeu3.chr10             C 0 M 811
s rheMac3.chr19              60022943 1300 +  64156825 ggctaaacaaactacaactcccatgAGCCTCCGGGG-CAGGAGCCCAGCCAGGGAAGCTGCAGGCTACCCTGG----GGCTTGCTGGGTGATGTAGTTCTGCAGTGTCACCTGAGGCTGGTGGGACTCACTCACCGCAGGACATAGGAACGGGCAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCCGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAGGGAAGCCGCCTTCTCCGGACT-------------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCTCTCCCGACGCCTGCTAGTGTCCCAGCCCCGGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCTTCTGGCTGTCAGACTTGCTAGGGCAACAAGGGAGGGGGGCCCAGAGGGTGCCTGT--AGGGGAGGACGATGGTTGG-GCCAGGTGGTACAGTTCACTGACAATGGGCTGCTGCTTCTTTTGGTACCTAATGGGGCCTGCCACAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TTAAGCAACCAAGCTCAG-TATGTTCAGAGAAGCCTCCAAGGATGGTCCCTTCTAAATCGTC-GGACACTGCAGTTGCTAGGGAAGTTGTGATTATCATCCCTCATAACAAGGTGCTTCATGGTTGCTAGGGAGATGTTCCAGGCACCAGTGGGGTCCCCATGATCTTTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAAGGCCTAGGATGTTTAGAAAGG-CTTT---TAGAAAGGGACTTT-----TTCCTGGTCGCAGT-GATTGTTGGAGAAGTGTCACTTCTAACAATA-CAGTGGTTCCCTCGTCACTCATGCCGACAGCCCCAGCAGTGGGAAACGTT----GGCCCATATGAAGCCTTGGTGGCCTCTGATGATGGGAGGGGAGCCATCCTTTAGGGGTGGGGACCCAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGATTCACTGGGGGG-ACATCGTCTCTCTAGCAGCTGGAGATCAGAGCATGGTTATTAGGGCAGTGGTAATAAATTCACGTGGGGGT-------GTCACTA-CCCCCACAACAGAATGGCAGTTGGTGACGACTAGGGG----A-----CAACCCTAGCAGGG---AGTAGTTCATCATTTACATCGACGGGCTGTTCCCCCAGCTGCAGTCCAAGCCCCTGG-GGGAAGGCTGACTGCAGCTGCGAGGAACGCAAGAGCAGTCTACTCCTGGTTGCTGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55046504 1300 +  59248254 ggctaaacaaactacaactcccatgAGCCTCCGGGG-CAGGAGCCCAGCCAGGGAAGCTGCAGGCTACCCTGG----GGCTTGCTGGGTGATGTAGTTCTGCAGTGTCACCTGAGGCTGGTGGGACTCACTCACCGCAGGACATAGGAACGGGCAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCCGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAGGGAAGCCGCCTTCTCCGGACT-------------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCCTGCTAGTGTCCCAGCCCCGGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCTTCTGGCTGTCAGACTTGCTAGGGCAACAAGGGAGGGTGGCCCAGAGGGTGCCTGT--AGGGGAGGACGATGGTTGG-GCCGGGTGGTACAGTTCACTGACAATGGGCTGCTTCTTCTTTTGGTACCTAATGGGGCCTGCCACAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TTAAGCAACCAAGCTCAG-TATGTTCAGAGAAGCCTCCAAGGATGGTCCCTTCTAAATCGTC-GGACACTGCAGTTGCTAGGGAAGTTGTGATTATCATCCCTCATAACAAGGTGCTTCATGGTTGCTAGGGAGATGTTCCAGGCACCAGTGGGGTCCCCATGATCTTTGTAGCTAAGGAAAAGGCATTCCTTAGCAACAAGGCCTAGGATGTTTAGAAAGG-CTTT---TAGAAAGGGACTTT-----TTCCTGGTCGCAGT-GATTGTTGGAGAAGTGTCACTTCTAACAATG-CAGTGGTTCCCTCGTCACTCATGCCGACAGCCCCAGCAGTGGGAAACGTT----GGCCCATATGAAGCCTTGGTGGCCTCTGATGATGGGAGGGGAGCCATCCTTTAGGGGTGGGGACCCAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGATTCACTGGGGGG-ACATCGTCTCTCTAGCAGCTGGAGATCAGAGCATGGTTATTAGGGCAGTGGTAATAAATTCACGTGGGGGT-------GTCACTA-CCCCCACAACAGAATGGCAGTTGGTGACGACTAGGGG----A-----CAACCCTAGCAGGG---AGTAGTTCATCATTTACATCGACGGGCTGTTCCCCCAGCTGCAGTCCAAGCCCCTGG-GGGAAGGCTGACTGCAGCTGCGAGGAACACAAGAGCAGTCTACTCCTGGTTGCTGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47150571 1296 +  51301725 GGCTAAACAAACTACAACTCCCATGAGCCTCTGGGG-CAGGAGCCCAGCCAGGGAAGCTGCAGGCTACCCTGG----GGCTTGCTGGGTGATGTAGTTCTGCAGTGTCACCTGAGGCTGGTGGGACTCACTCACCGCAGGACATAGGAACGGGCAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCCGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAGGGAAGCCGCCTTCTCCGGACT--------------GGGGGTGGAGGATGAGGGTA-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCCTGCTAGTGTCCCAGCCCCGGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCTTCTGGCTGTCAGACTTGCTAGGGCAACAAGGGAGGGTGGCCCAGAGGGTGCCTGT--AGGGGAGGACGATGGGTGG-GCCGGGTGGTACAGTTCACTGACAATgggcttcttcttcttttggtaCCTAATGGGGCCTGCCACAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TTAAGCAACCAAGCTCAG-TGTATTCAGAGAAGCCTCCAAGGATGGTCCCTTCTAAATTGTC-GGACACTGCAGTTGCTAGGGAAGTTGTGATTATCATCCCTCATAACAAGGTGCTTCATGGTTGCTAGGGAGATGTTCCAGGCACCAGTGGGGTCCCCATGATCTTTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAAGGCCTAGGATGTTTAGAAAGG-CTTT---TAGAAAGGGACGTT-----TTCCTGGTCGCAGT-GATTGTTGGAGAAGTGTCACTTCTAACAATA-CAGTGGTTCCCTCGTCACTCGTGCCGACAGCCCCAGCACTGGGAAAC-------GGCCCATATGAAGCCTTGGTGGCCTCTGATGATGGGAGGGGAGCCATCCTTTAGGGGTAGGGACCCAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGATTCACTGGGGGG-ACATCGTCTGTCTAGCAGCTGGAGATCAGAGCATGGTTATTAGGGCAGTGGTAATAAATTCACGTGGGGGT-------GTCACTA-CCCCCACAACAGAATGGCAGTTGGTGACGACTAGGGG----A-----CAACCCTAGCAGGG---AGTAGTTCATCATTTACATCGATGGGCTGTTCCCCCAGCAGCAGTCCAAGCCCCTGG-GGGAAGTCTGACTGCAGCTGCGAGGAACACAAGGGCCGTCTACTCCTGGTTGCCGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46855185 1302 +  50890351 ggctaaacaaactacaactcccatgAGCCTCCGGGG-CAGGAGCCCAGCCAGGGAAGCTGCAGGCTACCCTGG----GGCTTGCTGGGTGATGTAGTTCTGCAGTGTCACCCGAGGCTGGTGGGACTCACTCACCGCAGGACATAGGAACGGGCAGGTGCGCTCTTGTAGATATACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCATCGCGCACCCGCACGCAGAAATCTGTGCCGTAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAGGGAAGCCACCTTCTCCGGACT-------------GGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCCTGCTAGTGTCCCAGCCCTGGATGCTAAGGAAGGGATCCTGGCCAGGCAATGGCCTTCTGGCTGTCAGACTTGCTAGGGCAACAAGGGAGGGTGGCCCAGAGGGTGCCTGTAGAGGGGAGGGCGATGGGTGG-GCCGGGTGGTACAGTTCACTGACAATGGGCTTCTTCTTCTTTTGGTACCTAATGGAGCCTGCCGCAGCCATGAAAAGCCTTGAAGGGCTATGGTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TTAAGCAACCAAGCTCAG-TATATTCAGAGAAGCCTCCAAGGATGGTCCCTTCTAAATCGTC-GGACACTGCAGTTGCTAGGGAAGTTGTGATTATCACCCCTCATAACAAGGTGCTTCATGGTTGCTAGGGAGATGTTCCAGGCACCAGTGGGGTCCCCATGATCTTTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAAGGCCTAGGATGTTTGGAAAGG-CTTTTTCTTGAAAGGGACTTT-----TTCCTGGTCGCAGT-GATTGTTGGAGAAGTGTCACTTCTAACAATA-CAGTGGTTCCCTCGTCACTCGTGCCGACAGCCCCAGCAGTGGGAAAC-------GGCCCATATGAAGCCTTGGTGGCCTCTGATGATGGGAGGGGAGCCATCCTTTAGGGGTGGGGACCCAGCAGATTTAGAAAAACCTTCAATTCCTGCTTGGATTCACTGGGGGG-ACATCGTCTCTCTAGCAGCTGGAGGTCAGAGCATGGTTATTAGGGCAGTGGTAATAAATTCACGTGGGGGT-------GTCACTA-CCCCCACAACAGAATGGCAGTTGGTGACGACTAGGGG----A-----CAACCCTAGCAGGG---AGTAGTTCATCATTTACATCGACGGGCTGTTCCCCCAGCTGCAGTCCAAGCCCCTGG-GGGAAGGCTGACTGCAGCTGCGAGGAACACAAGGGCAGTCTACTCCTGGTTGCCGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45437237 1282 +  49145316 ggctaaacaaactacaactcccgtgAGCCTCCGGGG-CAGGGGCCCAGCCAGGGAAGCTGCAGGCTACCCTGG----GGCCTGCTGGGAGATGCGGTTCTGTAGCGTC-CCTGAGGCTGGGCGGGCTCACTCACCGCAGCACATAGGAGCGGGTCGGTGCGCTCTTGTAGATGTACTGCGCCAGCCACCACTGCACCGTCATGTTCCAGTACCGCATGCCCTCGCGCACCCGCGTGCAGAAATCCGTGCCATAGCAGTCGATGTTGCGGATGGTCTCATAGTCATACTCCAGGGAAGCCGCCTTCTCCGGACT--------------GGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCCTGCTAGTGTCCCAGCCCCGGATGCTAAGGAAGGGATCCTGGCCAGGCAGTGGCCCTCTGGCTGTCAGATTTGCTAGGGCGACAAGGGAGGGTGGCCGAGAGGGTGCCTGT---CGGGAGGAGGAGGGGTGG-GCCGGGTGGTACTGCTCACCGACAGCGGGGTTCTTCTTGCTTTGGTAACTAACGGGGCCTGCCAGAGCCATGAAAAGCCTTGAAGGGC--TGCTTGCTAAGCTAT-GAGTCCT-------------------------------------------------TT-AGCAACCAAGCTCAG-TATATTCAGAGAAGCCTCCAAGGATGGTCCCTTCTAAACTATT-GGACACTGCTGTTGCTAGGGAAG-------TATCTTCCCTAATAACACGATGATTCACGGTTGCTAGGGAGATGTTCCAGTCGCCAGTGGGGTCTTAATGATCTCTGTTGCTAAGGAAAAGGCATTCCTTAGCAACAGGGCCCAGGATGTTTAGAAAGG-CTTT---TAAAAAAGGGCTTTT----TTCCTGGTCCCAGC-AA----TGTCGAAGTGTCACCCCTAGCAATA-CAGTGGCTCTGTCGTCACTCGTGCCAATAGCCCCAGCAGTGGGAAACGCT----GGCCCACATGAAGACCTGGTGGCCTCTGATGATGGGAGGGGAGCCAT-CTTGAGGAGTGGGGGCCAAGTGGATTTAGCAAAGCCTTCAATTCCTGCTTGGCTTTTCTGGGGGGGACATCCTATCTCTAGCAGCTAGAG-TCAGGGCATGGTTATCAGGGCAGTGGTCATAAACTCACGTGGGGGT-------ATCACTA-CCCCCACAACC-AATGGCAGTTTT---CGACTAGGGATGGCA-----CAACCCTAGCAGGG---GATAGTTCATCATTTACATCAACAGGCTGCTGCCCCAGCCACAGTCCAAG-CCCTGG-GGGAAGGCTAACTGCAGCTGCCAGGAACACAAGGGCAGTCTACTCCTGGTTGCCAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3683676 1222 + 145441459 GGCCCAAGAAACTACAATTTCCATAAGCCTTGGGCC-TTAGGGCCCAGCTAGAGAAGCCCCAGACTACCACAGGTCAGTCATACTGGCAGATAAAGTTCTGCACTGTC-TCTGATACCAGGTGGGCTCCCTCACCTCAAAACGTAGGAGCGGAAAGGTGCGCTCTTGTAGATGTACTGTGCCAGCCACCACTGCACGGTCATGTTCCAGTATCGCATGCCATCCCGCACACGCACGCAGAAGTCTGTGCCATAGCAGTCGATGTTACGGATGGTCTCATAGTCATACTCCAGGGAAGCTGCAATCTCCGGACt--------------gggggtgg-gggtgggggtggagatgaggatggggACAGACATGCAGCTCAGCCAGGCCC-CTCCTGACACCTGCTTCTGTCCCAGCCC--GATGCTAAAGAGGGGGTTCTGGACAGGCTGT----------------GACTTTTGAGGGCCACTGGGTAGGATAGGCCAGAGGGAGTCGGG--------------TAGGTGG--------GGCACAATTCACTAATAGTG------CTGTGCTCTTGGTAACTAGTAGGGCCTGATACAGCCACAGAAATCCTTGGAGAGCTATGGTTGCTAAGCTATCAAGTCCA-------------------------------------------------CT-GGCAACCAAGCTCAGAAATATTGAGAATAGCTTCCAAGTATGGTCCCTTCTGAACTGTG-GGGCAGAGCAGCTGCCAGTAAAGT----------ATCCACTCTAAAAAGGTGGTTCACGGTTGCTAGGGAGATATTCTAGGCCTCG--TGACTCTCAATGATCTCTGTTGCTAGGGAAAAGGCATTCCTTAGCAACAAGGCCCAGGCTGTTCAGAAAAATCTTT---TCAGAAAGGACTTCT----TCCCTGGTCCCTTTCGATTGTTCGAGAAGTGTCCCCTCCAGAAATATCAGAGGTTTTCAGATCTCCGACACCCATACTGTCAGCTATCGATAAAGATGCTAGGCCTATGTGAATGTTCAGCGTCTTCTGGACATGGGAGGGGGACT---------------------TGTAGATTTAAAACAGCATTTAATCTCTGCCTGACTTCACT-GCAGG-ACACCCTCCCTCTAGCAGTGAGTGGTTGATCCATGGTTACTAGGGCAGTGGTAATCAGTTTATATGGGGTGGGGGGCAGCCATTA-CCAC--CAACAGGATAA-------TGACAACCGGGGA-GATA-----CAACCCTACCAAGG---AGTGATCTACAATTTA---GGAGAGGCTG------------CAGTCCCATTCCCCAGCAGGAAGGCTGACAATGGATTCTAGAGACG--------GTTCACTACTGGTTGCTAG
i mm10.chr7                 I 4687 C 0
s canFam3.chr1               19642339 1336 - 122678785 gcctccagaaactacaactcccgtgactcTATTGGG-AGGAGGCCCGACCGCGGAGCCGGCAGGCAGCCCCAA----GTGCTGCCGGAAGATGTAGTTCCG-AGTTTT-CCCAAGGCGGGCGGG-----CTCACCTGAGAACATAGGAGCGGGCAGGTGCGCTCTTGTAGATATACTGTGCCAGCCACCACTGCACTGTCATGTTCCAGTACCGCATGCCATCCCGCACCCGCACGCAGAAGTCAGTGCCATAGCAGTCGATGTTGCGGATGGTCTCATAGTCGTACTCCAGGGAAGCCGCCTTCTCCGGACTGGGGGTGGGGGGTGGGGGGTGGAGGATGAGGGTG-----------GGGGACAGACATGCAGCTCAGCCAGGCCCCCTCCCGACGCTGGCTACTGTCCTAGCCCCAGACACTCAGGAGGGGATCACGGCCAGGCAATAGC--TCTGGCTGTCACATTTGCTAGGGCAACAGGGTTGGGGC-----GGGGGGGCTTTT--CCGGGACTAAGACTAGTGGAGGTGAGGGGCACAGTTCACTGACAATGGGG---TCCTCCTCTTGGTAAC-----AGGGCTGCAACAGCAAGGAAGAGCCTGGAAGAGCTACAGTTGCTAAGCTAT-GAGTCCTTAGCAACCTGATCCTTCACTGGTCTCTGATGCTAGGGAAAGGCCATTCCTT-AGCAACCAAGCTCAC-TATATTCCGAGAAGCTTCCAAGTATGGTCCCTTCTAAGTGGGGAAGATACTGTGGTTGCTAGGGAAG-------TAGCATTCCTAACAATGAGGTGGTCTGTGGTTGCTAGGGAGATGTTCT-GACCCATGTGACACCAGGACAGTCTCTGTTGCTAGAAAAAGGGCATTCCTTAGCAAAAAGGCCTGGGATGTTTAGAAATG-CTTC---CAGAAAGGGCCTTTCCTGGTTATTGGTCCTA-T-GATGACTTAAGAAGTGTCATCTCCAGCAACA-CGGTGGTTCCTGGATCCCTGGTGTCAACATCCCCAACAGTGGTGAACATTCTG-CACCCATCTGAGCCGTTGGTAGTTTCTGATAATGGGATGGGAGCCATCTATTAAAAGTGGGG-CTCAGTAGATTTAGAAAAGCCTTCAGTTTCTGCTTGACATTTTCTGGGAG-ACA--CTCTCTCTAGTAACTGGAGGTCCACTCGTGGTTACCAGGGCAGTGGCTG-AAATTCGTTTGGGGGT-------GCTACTT-CCCCCTTAATGGAATGGCTGTCTGTGACTACTAGGGG----ATGCCCCAATCCGGGCAAGG---AGGAATTCATAATTTACATAGACAGGCTGCTTTGCC-----CAGCCTCAGCCCCAGG-TAGAAGGCCACCCATGTTTGCTAGGAACAGTGGGGCAGTCCATTCCCAGTTGCTAG
i canFam3.chr1              C 0 C 0

a score=464674.000000
s hg38.chr19_GL949751v2_alt    154769 183 +   1002683 GGGTGCCATCTCCCTAGCAACACGGGGGCAATACTTCCTCAGCCACAAGAGAGTCCACAGCTA-TGGC-------CGTGCGACTTGCCTAGCAATGCAGGTGCCG---------GGGGGTGGAGCCTCTCTGGCAACAAGGGTCAACCCATAGTTTCCAGGGGGAGGTTTGGCTTCCTTAGCAACAGTGTAA-------CTGTAGTT
s panTro4.chr19              59087980 183 +  63644993 GGGTGCCATCTCCCTAGCAACACGGGGGCAATACTTCCTCAGCCACAAGAGAGTCCACAGCTA-TGGC-------CGTGCGACTTGCCTAGCAATGCAGGTGCTG---------GGGGGTGGAGCCTCTCTGGCAACAAGGGTCAACCCACAGTTTCCAGGGGGAGGTTTGGCTTCCTTAGCAACAGGGTAA-------CTGTAGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55965059 183 +  60714840 GGGTGCCATTTCCCTAGCAACACGGGGGCAATACTTCCTCAGCCACAGGAGAGTCCACAGCTA-TGGC-------CGTGCGACTTGCCTAGCAATGCAGGTGCTA---------GGGGGTGGAGCCTCTCTGGCAACCAGGGTCAACCCGTAGTTTCCAGGGGGAGGTTTGGCTTCCTTAGCAACAGTGACA-------CTGTAGTT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60024243 190 +  64156825 GGGTGCCATTTCCCTAGCAACACGGGGGCAATGCTTCCTTAGCCACAAGAGAGTCCACAGCTA-CGGC-------CGTGCTACTTGCCTAGCAATACCGGTGCTGG--GGGGTGGGGGGTGGAGCCTCTCTGGCAACAAGGGTCAACCCATAGTTACCAGGGGGAGGTTTGGCTTCCTTAGCAACAGTGTAA-------CCGTGGTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55047804 190 +  59248254 GGGTGCCATTTCCCTAGCAACACGGGGGCAATGCTTCCTTAGCCACAAGAGAGTCCACAGCTA-CGGC-------CGTGCTACTTGCCTAGCAATACCGGTGCTGG--GGGGTGGGGGGTGGAGCCTCTCTGGCAACAAGGGTCAACCCATAGTTACCAGGGGGAGGTTTGGCTTCCTTAGCAACAGTGTAA-------CCGTAGTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47151867 196 +  51301725 GGGTGCCATTTCCCTAGCAACACGGGGGCAATACTTCCTCAGTCACAAGAGAGTCCACAGCTA-TGGCCGTGCTACGTGCTACTTGCCTAGCAATACCggtgctgg--ggggt-gggggtggagccTCTCTGGCAACAAGGGTCAACCCATAGTTACCACGGGGAGGTTTGGCTTCCTTAGCAACAGTGTAA-------CCATAGTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46856487 190 +  50890351 GGGTGCCATTTCCCTAGCAACACGGGGGCAATACTTCCTCAGCCACAAGAGAGTCCACAGCTA-TGGC-------CGTGCTGCTTGCCTTGCAATACCGGTGCTGG--GGGGTGGGGGGTGGAGCCTCTCTGGCAACAAGGGTCAACCCATAGTTACCAGGGGGAGGTTTGGCTTCCTTAGCAACAGTGTAA-------CCGTAGTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45438519 181 +  49145316 GGGTGCCATTTCCCTAGCAACACAGGGGCAATACTTCCTCAGCCACAGGAGAGCCCACAGGTG-TGGC-------CATGCGACTTGCCTAGCGATGCCGGT--TG---------GGGCATGCAGCCTCTCTGAAAACTAGGGTCAACCCATAGTCACCAGGGGGAGGCCTGGCTTCCTTAGCAACAGTATAA-------CTGGAGTT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3684898 157 + 145441459 GGATACCATTTCCCTATCAACA-AGGACTGATGCTTGCTAAGTAGTAAGAA---CCGTAGTTACTAGT-------TTTGTGACGTTCTCAGCTATGATGGCGCTG---------GCGCTTGGGGTAGCTTTACTGGTAAAGGGAAAGCCTCAGCAATCGGGG-----------------------AAGACAA-------CCGTGGTT
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19643675 187 - 122678785 GAGCATCATTTCCCTAGCAACACAGGGGCAACACTTCCTTAGCAACAAGAT-GCCCCTAGTTACTGGC-------AGTGTGACCTACCCAACAACTAAAGAAAGGGGTGAGGTGAGGGCTGCAGCAT---TGCCAACAA-GGTCACTCCATAGTTACCAGGGTATG--------TCCTTGGCAACGGTAGGAAAGTGACCTGCGGTG
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102733693 811 - 106955855 M

a score=1804407.000000
s hg38.chr19_GL949751v2_alt    154952 529 +   1002683 GGTAGGAATGGCGTGCCCTCT---GC-TGGGGAACAGCACTGGTCAGGGATTGGAAATTGCTATTTCCTTG----CAGAGGGCTGCTGAGGGCTGCTATGTGAGGACATCCCAC--GGGGTGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GGGCAGTGCAGGGAGTGCCGTATCTGCAGCAAC--AGAGCAAAACTTCTGGTAAAAAGGAGGTGAGCTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAATAGTGGCGTTCT-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTAGCAAAGGATGGCATCCCCAGCAAGCAGGAACAATCTGGTTCT-GGGGGGTGACACTTCTGTGGCAACAGAGGGGTGGCACAGGGTTGCTAAGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCACACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----ATCTTTTCCCTACCGACAGGGGCTGGCAGGCCATGGTTGCCGAGGGGGCGACAC
s panTro4.chr19              59088163 529 +  63644993 GGTAGGAATGGCGTGCCCTCT---GC-TGGGGAACAGCACTGGTCAGGGATTGGAAATTGCTATTTCCTTG----CAGAGGGCTGCTGAGGGCCGCTATGTGAGGACATCCCAC--GGGGTGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GGGCAGTGCAGGGAGTGCCATATCTGCAGCAAC--AGAGCAAAACTTCTGGTAAAAAGGAGGTGAGCTACTGTTGCCAGGGATCCTGCTTCCCTAGCAAATAGTGGCATTCT-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTAGCAAAGGATGGCATCCCCAGCAAGCAGGAACAATCTGGTTCT-GGGGGGTGACACTTCTGTGGCAACAGAGGGGTGGCACAGGGTTGCTAAGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCACACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGCCAGTACCAGGG----ATCTTTTCCCCACCGACAGGGGCTGGCAGGCCGTGGTTGCCAAGGGGGCGACAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55965242 529 +  60714840 GGTAGGAATGGCGTGCCCTCT---GC-TGGGGAACAGCACTGGTCAGGGATTGGAAATTGCTATTTCCTTG----CAGAGGGCTGCTGAGGGCTGCTATGTGACGACATCCCAC--GGGCTGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GGGCAGTGCAGGGGGTGCCATATCTGCAGCAAC--AGAGCAAAACTTCTGGCAAAAAGGAGGTGAACTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAATAGTGGCGTTCT-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTAGCAAAGGATGGCATCCCCAGCAAGCAGGAACAATCTGGTTCT-GGGGGGTGACACTTACGTGGCAACAGAGGGTTGGCACAGGGTTGCTAAGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCATACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----GTCTTTTCCCTAAGGACAGGGGCTGGCAGGCCGTGGTTGCCAAGGGGGCGACAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102734504 514 - 106955855 GGTAGGAATGGC-TGCCCTCT---GC-T-GGGAACAGCACTGGGCAGGGATT-GAAATCGCTATTTCCTTG----CAGAGGGCT----------GCTATGTGAGGACATCTGAC--GGGGTGGAGCA---GTGCTACCTCCTAGCAACAAAAG-GGGCAGTGCAGGGGGTGCCATATCTGCAGCAAC--AGAGCAAAACTTCTGGCAAAAAGGAGGTGAACTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAACAGTGGCGTTCC-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTAGCAAAGGATGGCATCCCCAGCAAGCAGGAACAATCTGGTTCTGGGGGGGTGACACTTGCGTGGCAACAGAGGTGTGGCACAGGGT---TAAGTCACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCATACTGTGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----GTCTTTTCCCTACCGACAGGGGCTGGCAGGCTGTGGTTGCCAAGGGGGCGACA-
i nomLeu3.chr10             M 811 C 0
s rheMac3.chr19              60024433 535 +  64156825 GGTAGGAATGGCATGCCCTCT---GC-TGGGGAACAGCACTGGTCAGGGATTGGAAATTGCTATTTCCTTGCAAACAGAGGGCAGCTGAGGGCTGCCATGTGAGGATATCCCACATGGGATGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GTGCAGTGCAGGGGGAGCCATATCTGCAGCAAC--AGAGCAAAACTCCTGGCAAAAAGGAGGTGAACTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAATAGCAGTGTTCC-GTTGCTAGGGAACCGTTTACCTAGCAACAGAGGGT-GA---CCCACCACTACCAAAGGATGGCATCCCCAGCAAGCAGGAACAACCTGGTTCT-GGGGGGTGACACTTCCGTGGCAACAGAGGGGTGGCACAGGGTTGCTAAGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCATACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----GTCTTTTCCCTACCGACAGGGGCTGGCAGGCCGTGGTTGCCAAGGGGGCGACAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55047994 535 +  59248254 GGTAGGAATGGCATGCCCTCT---GC-TGGGGAACAGCACTGGTCAGGGATTGGAAATTGCTATTTCCTTGCAAACAGAGGGCAGCTGAGGGCTGCCATGTGAGGATATCCCACATGGGATGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GCGCAGTGCAGGGGGAGCCATATCTGCAGCAAC--AGAGCAAAACTCCTGGCAAAAAGGAGGTGAACTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAATAGCAGTGTTCC-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTACCAAAGGATGGCATCCCCAGCAAGCAGGAACAACCTGGTTCT-GGGGGGTGACACTTCCGTGGCAACAGAGGGGTGGCACAGGGTTGCTAAGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCATACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----GTCTTTTCCCTACCGACAGGGGCTGGCAGGCCGTGGTTGCCAAGGGGGCGACAC
i macFas5.chr19             C 0 I 6096
s papAnu2.chr19              47152063 533 +  51301725 GGTAGGAATGGCATGCCCTCT---GC-TGGGGAACAGCACTGGTCAGGGATTGGAAATTGCTATTTCTTTGCAAACAGAGGGCAGCTGAGggctgccatgtgaggatatcCCAC--GGGATGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GCGCAGTGCAGGGGGAGCCATATCTgcagcaac--agagcaaaacttctGGCAAAAAGGAGGTGAAGTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAATAGCAGTATTCC-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTACCAAAGGATGGCATCCCCAGCAAGCAGGAACAACCTGGTTCT-GGGGGGTGACACTTCCGTGGCAACAGAGGGGTGGCACAGGGTTGCTAGGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCATACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----GTCTTTTCCCTACCGACAGGGGCTGGCAGGTCGTGGTTGCCAAGGGGGCGACAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46856677 532 +  50890351 GGTAGGAATGG-ATGCCCTCT---GC-TAGGGAACAGCGCTGGTCGGAGATTGGAAATTGCTATTTCCTTGCAAACAGAGGGCAGCTGAGGGCTGCCATGTGAGGATATCCCAC--GGGATGGAGCA---GTGCTAGCTCCTAGCAAC-AAAG-GCGCAGTGCAGGGGGAGCCATATCTGCAGCAAC--AGAGCAAAACTTCTGGCAAAAAGGAGGTGAACTACTGTTGCTAGGGATCCTGCTTCCCTAGCAAACAGCAGTGTTCC-GTTGCTAGGGAACCGTTTCCCTAGCAACAGAGGGT-GA---CCCACCACTACCAGAGGATGGCATCCCCAGCAAGCAGGAACAACCTGGTTCT-GGGGGGTGACACTTCCGTGGCAACAGAGGGATGGCACAGGGTTGCTAAGTTACCA----CCTTTTCCTAGCGACAGGGGG--------CAGTTCACCATACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCAGTACCAGGG----GTCTTTTCCCTACCGACAGGGGCTGGCAGGTCGTGGTTGCCAAGGGGGCGACAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45438700 490 +  49145316 GCTAGGAATGGCATCAGCTCT---GC-TGGGTAACAGCA---GGTGGGGATTTGAAATTGCTATTTCCTTT----CAAAGAGC--------GCAGCTACTTGACCACATCCCAT--GAGATGGAGGA---GGGCTAGCTCCTAGAAAC-AGAG-GGGTGGTGCAGGGGGTGCCGTATCTGCAGCAAC--AGAGCAAAACTTCTGGCAAGAAGGAGGTGAACTACTGTTGCTAGGGACCCTGCTTCCCTGGCAG--AGTGGTGTTCG-GTTGCTAGGTAACTGTTTCCCTAGCAACAGAGGGT-GA---CCCGCCACTACCAAAGGATGGCATCCCCAGCAAGCAGGAACAATCTGGTTCT--GGGGGTGACACTTCCGTGGCAACAGAGGGGTGGCACAGTGTTGCTAAGTTACCA----CATTTTCCTAGCAATGCGGGGGGGGGGTTCAGTTCACCATACTGCGGGGTGACAAGCGCTAGCAACAAGGGGC-ATCTGTCATTACCAGGG--TTTTTTTTTCCCTATCGACAG-----------------------------------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3685055 503 + 145441459 GCTGAGAAAGG--TGCTCTCCACAGC-TGGAGGAGAGCA---GCCAAAGAT--------GTTACTTCCTTACA--AATAGGGCAACTGGGAGGTGCTGTGTGAGAACATCCCAT--GG---TGAGC-----TGCTCGCTCTAAGCAAG-GCAG---GCAGTTCA--------CAAACAGGCACAAAC----AGCAGGGCTCTCAGCAGTAAG-----GAACCAAGGTTGCTAGGGATATAGCATTCTCAGCACA-GGGGCTGTTCA-ATTGCTAAGGAATGGTTTCCCTAAACACAGATGATGGA---CCCACTACTACCAAAGGATAGTATCTCTAGCAACTGGGAACAGCCTGGATCT--TGGGGTGACTCTTCCATAGCAACACAGGGTAAGCATGTGGTTGCTAAGATACTATTTTCCTTTCCCTAGCAATAGAGGA--------CAATTAGCCATACTGAGGGGTGACAAAT----GCAACAAGGGGCAATCTGTAGGTACCAGAAACACATAGTTTCCCTAGTGGCCAGGGAAGGCAGGTGATAGTCACCAGGGGGGCAATAC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19643862 502 - 122678785 GCTAGGAGTGCCATCCCCTCT---GTGCAGAGGGCAGCA-TGGTCAGGGAT--------GCCATTTGCTTA----GAAGGTGCA------GGCTGCT-----AGTACAGCCCAT--GGTTGGGTGTGTGTGTGCTGGCTTCTAGCCAC-AGAGAGAGGTTTAAAGGGGATGCTATTTACACAGCAATGAAAAGCAAGTCTTGTGGCTGGAAGG-GGCAGGCCACGGTTACTAGGGA-AGTGCTTCTCTGGCATAGAGGGGCAGTCTAGTTGCCAGGGTACCATTTCCCTAGCAACAAAGGGT-GGGGCCCCATCACAGCCCAAAGATGGTATCTGGAGTAACCAGGAACAACCGAGTTAC--CAGGGTAACACTTCCATGGCAACAGAAGGGCAGTGCATGGTTGCTAAAAGACCATCTTCCCTCTCCTAACAACAGAGAG--------CAGTTCGCCATCCCAAGAGGTGACAAGCAGTAGC-ACAAGGGGC-AGTGGAAGGTATGGGGA----GTATTGCTCCCTAGGACAGGGGTAGGT------------------GGGCGACAC
i canFam3.chr1              C 0 C 0

a score=171233.000000
s hg38.chr19_GL949751v2_alt    155481 59 +   1002683 TCTGCTCA---AAAAGGTGGTGGCCCTGGCCCCTTGCTCCCCGCTCTCCTCCCGGCTAGGGG
s panTro4.chr19              59088692 59 +  63644993 TCTGCTAA---AAAAGGTGGTGGCCCTGGCCCCTTGCTCCCCGCTCTCCTCCCTGCTAGGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55965771 60 +  60714840 TCTGCTAA-C-AAAAGGTGGTGGCCCTGGCCCCTTGCTCCCCGCTCTCCTCCCTGCTAGGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102735018 56 - 106955855 -CTGCT-----AAAAGGTGGTGGCCCTGGCCCCTTGCTCCCCGCTCTCCTCCCTGCTAGGGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60024968 61 +  64156825 TCTGCTAA-CAAAAAGATGGTGGCCCTAGCCCCTTGCTCCCCGCTCTCCTCCCTGCTAGGGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47152596 61 +  51301725 TCTGCTAA-CAAAAAGATGGTGGCCCTGGCCCCTTGCTCCCCGCTCTCCTCCCTGCTAGGGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46857209 61 +  50890351 TCAGCTAA-CAAAAAGATGGTGGCCCTGGCCCCTTGCTCCCCGCTCTCCTCCCTGCTAGGGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45439190 58 +  49145316 ----CTAAACAAAAGGGTGGTATCCCTGCCCCCTTACTCCCCGCTCTCCTCCCTGCTAGGGG
i calJac3.chr22             C 0 I 584
s mm10.chr7                   3685558 52 + 145441459 GCTGCCAA-C-CACTGCTGGTAGCCC--------TACACCCTGCTCCCTTCCCTACTAGGGG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19644364 60 - 122678785 TCTTCTGA-C-AACAGGTGATGAACCTGCTCCCTTGCTCCCCACTCTCCTCCCTGCTAGGGG
i canFam3.chr1              C 0 C 0
e macFas5.chr19              55048529 6096 +  59248254 I

a score=1522570.000000
s hg38.chr19_GL949751v2_alt    155540 371 +   1002683 CAGAGCCAGCCCTTGGAGGTGGGGGCTGCTGGGTCTTGGGAAGCCTCCCTCGCGCCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTGGGGCCGCCTCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCAAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAggcgggcgggcagcgggcgggcgTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGAGAGGAGAGCAGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACTGCCCC
s panTro4.chr19              59088751 371 +  63644993 CAGAGCCAGCCCTTGGAGGTGGGGGCTGCTGGGTCTTGGGAAGCCTCCCTCGCGCCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTGGGGCCGCCTCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCAAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAGGCGGGCGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGAGAGGAGAGCAGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACCGCCCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55965831 371 +  60714840 CAGAGCCTGCCCTTGGAGGTGGGGGCTGCTGGGTCTTGGGAAGCCTCCGTCGCGCCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTGGGGCCGCCTCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCAAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAGGCGGGCGGGCAGCGGGCGGGCGTAGAAAGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGAGAGGAGAGCAGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACGGCCCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102735074 371 - 106955855 CAGAGCCAGCCCTTGGAGGTGGGGGCTGCTGGGTCTTGGGAAGCCTCCCTCGCGCCGCCTGACCTGCTAGGGGGTGGGCATTGGAGGGTGGGGCCGCCTCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCAAAGCCAGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAGACGGGCGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGAGAGGAGAGCAGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACGGCCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60025029 371 +  64156825 CAGAGCCAGCCCTGGGAGGTGGGGGCTGCTGGGTCTTGGGAAGCCTCCCTCGCGCCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTggggccgcccccggcccgggcTTTGGCGGCCACGGGGTAGGCCCCGAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAGGCGGGCGGGCAGCGGACGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGGGAGGAGAGCAGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACGGCCCC
i rheMac3.chr19             C 0 I 1155
s papAnu2.chr19              47152657 371 +  51301725 CAGAGCCAGCCCttggaggtgggggctgctggGTCTTGGGAAGCCTCCCTCGCACCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTGGGGCCGCCCCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCGAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAGGCGGGCGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCgggaagaggtgggaggagagcaGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACGGCCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46857270 371 +  50890351 CAGAGCCAGCCCTTGGAGGTGGGGGCTGCTGGGTCTTGGGAAGCCTCCCTCGCGCCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTGGGGCCGCCCCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCAAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAAGAGGCGGGGGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGGGAGGAGAGCAGGAACAGCAGGCCGAAGAGCGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACGGCCCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45439832 371 +  49145316 CAGAGCCAGCCCTTGGAGGTGGGGGCCGCTGGGTCTTGGGAAGCCTCCCTCCCGCCGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTGGGGCCACCCCCGGCCCGGGCTTTGGCGGCCACGGGGTAGGCCCCGAAGCCGGCGGCAATGCAGCCGCACTCGGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGGATCATGTAGAACAGGCGGGCGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGGGAGGAGAGCAGGAACAGCAGGCCGAAGAGAGGGGCCGGCCAGGCGCGGCGCAGCAGGGGCCGCAGGCTGGGCACGGCCCC
i calJac3.chr22             I 584 C 0
s mm10.chr7                   3685610 371 + 145441459 CAGAGCCAACCCTTGGTGGTGGGGCCTGCTGGGTCTTGGGAAGCCTCCCTCCCGCCGCCTGACCTGCTAGGGGGTGGGCATTGGAGGGTggggccgcccccggcccgggcTTTGGCAGCCACAGGGTAGGCCCCGAAGCCCGCGGCAATGCAACCGCACTCGGCCGCAATCCAGGCAACGTAGAAGCGCATGCGGAAGGCGAAGAAGACCGGGATCATGTAGAAGAGGCGGGTGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCACGCACAGCTTCCAGTGGGAAGAGATGGGAGGACAGCAGGAAGAGCAGGCCAAAGAGCGGGGCTGGCCAGGCGCGGCGCAGCAGGGGCCTCAGGCTGGGCACGGCTTC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19644424 371 - 122678785 CATGACCAGCCTGTGGTGATGGGGCCTGCCGGGTCTTGGGAAGCCTCCCTCCCACTGCCTGACCTGCTGGGGGGTGGGCATTGGAGGGTggggccgcccccggcccgggccTTGGCGGCCACAGGGTAGGCCCCGAAGCCGGCAGCAATGCAGCCGCACTCAGCGGCAATCCAGGCCACGTAGAAGCGCATGCGGAAGGCGAAGAAGACGGGAATCATGTAGAAGAGGCGGGCGGGCAGCGGGCGGGCGTAGAAGGCGTCCTCGCGCACGGCCTCCAGCGGGAAGAGGTGTGAGGACAGCAGGAATAGCAGCCCGAAGAGGGGGGCCGGCCAGGCTCGGCGCAGGAGGGGCCGCAGGCTGGGCACGGCTCC
i canFam3.chr1              C 0 C 0
e macFas5.chr19              55048529 6096 +  59248254 I

a score=572975.000000
s hg38.chr19_GL949751v2_alt    155911 276 +   1002683 GGGGAAGGGCTGCTCCAGCCAGTCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGT----GGGGCGGGGAGGGAGGGCCGC-GGTCAGA--------------------CA----------GGCAGGTGGGCAGAGCTCAAGTCTG-----CAGGAG----GAGGACAGGGAGCT-TGGAAGGAAGGTGGGAAGA--------GGGAGTGAGAGGGGCAGAGACTGGGCGCC-GGGGAGACCCCAAGGGTAGG--GACTGAGACCCTGAGAGATGGGGATAAGGAACGAGAGACAGGGGGGACAAGAA-ACTCAGagagacagagacagtaa
s panTro4.chr19              59089122 274 +  63644993 GGGGAAGGGCTGCTCCAGCCAGTCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGT----GGGGCGGGGAGGGAGGGCCGC-GGTCAGA--------------------CA----------GGCAGGTGGGCAGAGCTCAAGTCTG-----CAGGAG----GAGGACAGGGAGCT-TGGAAGGAAGGTGGGAAGA--------GGGAGTGAGACGGGCAGAGACTGGGCGCC-GGGGAGACCCCAAGGGTAGG--GACAGAGACCCTGAGAGATGGGGATAAGGAACGAGAGACA--GGGGACAAGAA-ACTCAGAGAGACAGAGACAGTAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966202 275 +  60714840 GGGGAAGGGCTGCTCCAGCCAGTCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGT----GGGGCGGGGAGGGAGGGCCGC-GGTCAGA--------------------CA----------GGCAGGTGCGCAGAGCTCAAGTCTG-----CAggag----gaggagagggagct-tggaaggaaggtgggagga--------gggagtgag-ggggcagagactgggcgcc-ggggagaccccaagggtagg--gacagagagcctgagagatggggataaggaacgagaggcagggaggACAAGAA-ACTCAGagagacagagacagtga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102735445 275 - 106955855 GGGGAAGGGCTGCTCCAGCCAATCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGT----GGGGCGGGGAGGGAGGGCCGC-GGTCAGA--------------------CA----------GGCAGGTGGGCAGAGCTCAAGTCTG-----CAGGAG----GAGGAGAGGGAGCT-TGGAAGGAAGGTGGGAAGA--------GGGAGTGAGAGGGACAGAGA-TGGGCGCC-GGGGAGGCCCCAAGGGTAGG--GACAGAGACCCTGAGAGATGGGGATAAGGAAAGAGAGACAGGGGGGACAAGAA-ACTCAGAGAGACAGAGACAGTGA
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47153028 275 +  51301725 CGGGAAGGGCTGCTCCAGCCAGTCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGT----GGGGCGGGGAGGGAGGGCCGC-CGTCAGA--------------------CA----------GGCAGCTGGGCAGAGCTCCAGtctg-----caggag----gaggagagggagct-tggagggaaggtgggaaga--------gggagagagaggggcagagactgggcgcc-ggggagaccccaggggtagg--gacagagacccagagagatggGGATAAGGAACgagagaca-gggggacaagaa-actcagagagacagagacagtga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46857641 271 +  50890351 CGGGAAGGGCTGCTCCAGCCAGTCCAGGTAGGTGCGGTAGCGGAAGAATGGGCCTGT----GGGGCGGGGAGGGAGGGCCGC-CGTCAGA--------------------CA----------GGCAGGTGGGCAGAGCTCTAGTCTG-----C---AG----GAGGAGAGGGAGCT-TGGAGGGAAGGTGGGAAGA--------GGGAGAGAGAGGGGCAGAGACTGGGCGCC-GGGGAGACCCCAAGGGTAGG--GACAGAGACCCAGAGAGATGGGGATAAGGAACGAGAGACA--GGGGACAAGAA-ACTCAGAGAGACAGAGACAGtga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45440203 269 +  49145316 CGGGAAGGGCTGCTCCAGCCAGTCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGT----GGGTCAGGGAGGGAGGGCAGC-AGTCAGA--------------------TG----------GGCAGGTGGGCAGAGCTCGAGTCTG-----C---AG----GAGGAGAAAGAGCT-TGGAGGGCAGGTGGGAAGA--------GGAATAGAGA--GGCAGACACTGGGTGCCGGGGGAAACCCcaggggtagg--gacagagacccagagagatggggacaaggaaggagatg----ggggacaacaagactcggagagacagagacagtga
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3685981 286 + 145441459 CGGGAAGGGCTGTTCCAGCCAATCCAGGTAGGTGCGGTAGCGGAAGAATGGGCCTGT----GGAGGGTGGCAAGGAGCAGGT-GGTTGGATGCTGTGTATCTGAGCCTACTg----------gggaggtgg---gaggtgaaa---g-----gaggag----gaggatggagagat-gggaaaaggggggaggaga--------gtaagcagaagagttggggacagaa-----ggggagATATGGAGAGCTGGTAAACGAGGGCCaagggaagggaagggaaggggggggaggggaggggGgagagag-a--gagagagacagagagacaga
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19644795 303 - 122678785 CGGGAAGGGCTGCTCCAGCCAATCCAGGTAGGTGCGGTAGCGGAAGAACGGGCCTGTGGCAGGAGGGAGGAGGGAGGGTGGCTGGTCAGA--------------------CATCCCTGGCTGGGAGGGTGGCCACAGCTAGTGTCTGACGTCCGGGGGGCCTGAGACTGGGGAGCTGCGGGGAGAGGGTTATGAAACCTCCAACAGGAGGAAGGAGGCCAGAGGCCTGAGATT-ggggagatg-gggggggagg--ggcgagga---ggagggagaggggTCTGAAACCCAGAACA--AGGGGAGTGAC-ACTCAGAGAAAAAAGGACAAGAA
i canFam3.chr1              C 0 I 1485
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=43831.000000
s hg38.chr19_GL949751v2_alt    156187 29 +   1002683 cagaaaaacagacagagGgg--ccggtgcgg
s panTro4.chr19              59089396 25 +  63644993 CAGAAAA----ACAGAGGgg--ccggcgcgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966477 29 +  60714840 cagaaaaacagacagagGgg--ccggcgcgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102735720 29 - 106955855 CAGAAAAACAGACAGAGGgg--ccggcgtgg
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47153303 29 +  51301725 cagaaaattagaaagagggg--ctggcgcgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46857912 29 +  50890351 cagaaaattagaaagagggg--ccggcgcgg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45440472 31 +  49145316 cagGAAATTAGATAGTGGGggccaggcgcgg
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3686267 29 + 145441459 gagagacagagacagagagg--ggggtaggg
i mm10.chr7                 C 0 I 1637
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=403767.000000
s hg38.chr19_GL949751v2_alt    156216 230 +   1002683 tggctcacacctggaatcccagcactttgggaggcctagctgggaggactgcttgagcccaacagttggacagcagcctgggcaaaacggcaagaccccatcactacaaaaaataaaaatcagccaggt---gtggagggcacctgaattcccagctactggggaggctgaggcgggaggatcgtttgagcccaggctgcagtgagcagtgactgagctactgcattccagcc
s panTro4.chr19              59089421 230 +  63644993 tggctcacacctggaatcccagcactttgggaggcctagctgggaggactgcttgagcccaacagttggagagcagcctgggcaaaacggcaagaccccatcactacaaaaaataaaaattagccaggt---gtggagggcacctgaattcccagctactggggaggctgaggcgggaggatcgtttgagcccaggctgcagtgagcagtgactgagctactgcattccagcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966506 232 +  60714840 tggctcacacctgcaatcccagcactttgggaggcctagctgggaggactgcttgagcccaacagttcgaggccagcctgggcaaaacggcaagaccccatcactacaaaaaataaaaattagccaggtgtggtggagggcacctgaattccgagctac-ggggaggctgaggcgggagaatcgtttgagcccaggctgcagtgagcagtgactgtgctactgcgttccagcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102735749 233 - 106955855 tggctcacacctggaatcccagcactttgggaggcctagctgggaggactgcttgagcccaacagttcgagaccagcctgggcaaaacggcaagaccccatcactacaaaaaataaaaattagccaggtgtggtggagggcacctgaattcccagctactggggaggctgaggcaggaggatcgtttgagcccaggctgcagtgagcagtgactgtgctactgcgttccagct
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47153332 233 +  51301725 tggctcacacctggaatcccagcactttgggaggcctagctgggaggactgcttgagcccaagagttcgagaccagtctgggcaaaatggcaagaccccatcactacaaaaaataaaaattagccaggtgtggtggagggcacctgtaatcccagctactgggggggctgaggcgggaggatcgtttgagcctaggctgcagtgagcagtgactgTGCTACTGCGTTCcagct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46857941 233 +  50890351 gggctcacacctggaatcccagcactttgggaggcctagctgggaggactgcttgagcccaagagttcgagaccagtctgggcaaaacggcaagaccccatcactacaaaaaatgaaaattagctaggtgtggtggagggcacctgtaatcccagctactgggggggctgaggcgggaggatcgtttgagcctaggctgcagtgagcagtgactgtgctactgcgttccagcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45440503 228 +  49145316 tggctcatacctagaattccagcactttgggagacctaggtgggag----gcttgagcccaagagtttgagaccagcctgggcaaaatggcaaaaccctgtcactacaaaacataaaaattaggcaggtgtggtgga-ggcacctgtaatcccagctactggggaggctgaggtgggaggatcgcttgagcccaggctgcagtgagcagtgactgtgctatggagttccagcc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=12928.000000
s hg38.chr19_GL949751v2_alt    156446 10 +   1002683 agggagggag
s panTro4.chr19              59089651 10 +  63644993 agggagggag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966738 10 +  60714840 agggagggag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102735982 10 - 106955855 agggagggag
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47153565 10 +  51301725 ggggaaggag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46858174 10 +  50890351 agggaaggag
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e calJac3.chr22              45440731  0 +  49145316 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=4159.000000
s hg38.chr19_GL949751v2_alt    156456 8 +   1002683 ggagggag
s panTro4.chr19              59089661 8 +  63644993 ggagggag
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47153575 8 +  51301725 ggaaggag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46858184 8 +  50890351 ggaaggag
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e ponAbe2.chr19              55966748 0 +  60714840 C
e calJac3.chr22              45440731 0 +  49145316 C
e nomLeu3.chr10             102735992 0 - 106955855 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=1751.000000
s hg38.chr19_GL949751v2_alt    156464 6 +   1002683 ggaggg
s panTro4.chr19              59089669 6 +  63644993 ggaggg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102735992 2 - 106955855 ----gg
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               46858192 6 +  50890351 ggaagg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e ponAbe2.chr19              55966748 0 +  60714840 C
e calJac3.chr22              45440731 0 +  49145316 C
e papAnu2.chr19              47153583 0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=13597.000000
s hg38.chr19_GL949751v2_alt    156470 54 +   1002683 aaggagtgaagaagggaagaaagaagggagggaaggagggaaggaaggagggag
s panTro4.chr19              59089675 54 +  63644993 aaggagtgaagaagggaagaaagaagggagggaaggagggaaggaaggagggag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102735994 54 - 106955855 aaggagggaaggagggaagaagggaaggaaggaagaagggaaggaaggagggag
i nomLeu3.chr10             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e ponAbe2.chr19              55966748  0 +  60714840 C
e calJac3.chr22              45440731  0 +  49145316 C
e chlSab2.chr6               46858198  0 +  50890351 C
e papAnu2.chr19              47153583  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=4041.000000
s hg38.chr19_GL949751v2_alt    156524 64 +   1002683 ggaaggagggaaggaagaagggagggaaggagggaaggaaggagggagggagggaaggagggaa
s nomLeu3.chr10             102736048 64 - 106955855 ggaaggagggaaggaggaagggaaAAAGGGAAAGACGGAGGGAGAGGGGAAGGAAAGAAAGAAA
i nomLeu3.chr10             C 0 I 360
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e ponAbe2.chr19              55966748  0 +  60714840 C
e calJac3.chr22              45440731  0 +  49145316 C
e chlSab2.chr6               46858198  0 +  50890351 C
e papAnu2.chr19              47153583  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I
e panTro4.chr19              59089729  0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    156588 400 +   1002683 ggaaggagggagggaaggagggaaggaaggagggagggagggaaggagggaaggaaggagggagggaaggagggaaggaagaagggagggaaggagggaaggaaggagggagggagggaaggagggaaggaaggagggagggagggaaggagggaaggaaggagggagggagggagggaaggagggaaggaaggagggagggaaggagggaaggaaggagggagggaaggaaggagggagggaaggagggaaggaaggagggagggaaggaaggagggaaggaaggagggaaggaaggagggagggaaggaaggagggagggaaggaaggagggagggagggagggaaggagggaaggaaggagggagggaaggagggaaggaaggagggagggaaggaa
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e ponAbe2.chr19              55966748   0 +  60714840 C
e calJac3.chr22              45440731   0 +  49145316 C
e nomLeu3.chr10             102736112 360 - 106955855 I
e chlSab2.chr6               46858198   0 +  50890351 C
e papAnu2.chr19              47153583   0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I
e panTro4.chr19              59089729   0 +  63644993 C

a score=2257.000000
s hg38.chr19_GL949751v2_alt    156988 26 +   1002683 ggagggagggaaggagggaaggaagg
s ponAbe2.chr19              55966748 26 +  60714840 ggaaggagggaagaagggaaggaagg
i ponAbe2.chr19             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e calJac3.chr22              45440731  0 +  49145316 C
e nomLeu3.chr10             102736112 360 - 106955855 I
e chlSab2.chr6               46858198  0 +  50890351 C
e papAnu2.chr19              47153583  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I
e panTro4.chr19              59089729  0 +  63644993 C

a score=4371.000000
s hg38.chr19_GL949751v2_alt    157014 22 +   1002683 agggagggaaggaaggagggaa
s ponAbe2.chr19              55966774 22 +  60714840 agggagggaaggagagaaggaa
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45440731 22 +  49145316 agggacaaagggaaggagggaa
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e nomLeu3.chr10             102736112 360 - 106955855 I
e chlSab2.chr6               46858198  0 +  50890351 C
e papAnu2.chr19              47153583  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I
e panTro4.chr19              59089729  0 +  63644993 C

a score=3925.000000
s hg38.chr19_GL949751v2_alt    157036 17 +   1002683 ggaaggaagaagggaaa-
s panTro4.chr19              59089729 17 +  63644993 ggaaggaagaagggaaa-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966796 16 +  60714840 gaagggaagaagagaa--
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45440753 18 +  49145316 ggaggaaaagaggcaaga
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e nomLeu3.chr10             102736112 360 - 106955855 I
e chlSab2.chr6               46858198  0 +  50890351 C
e papAnu2.chr19              47153583  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=6073.000000
s hg38.chr19_GL949751v2_alt    157053 10 +   1002683 agggaaggac
s panTro4.chr19              59089746 10 +  63644993 agggaaggac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966812  8 +  60714840 --ggatggag
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               46858198 10 +  50890351 agggaaggag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45440771 10 +  49145316 agggagggag
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e nomLeu3.chr10             102736112 360 - 106955855 I
e papAnu2.chr19              47153583  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60025400 1155 +  64156825 I

a score=188067.000000
s hg38.chr19_GL949751v2_alt    157063 117 +   1002683 ggagggaaggaggAAGGAAAGAAACTAGGAGATAGCTGTGGCACTTTAGCTACAATATGATGGTGGTCTGGCCTAGGGAGGAAGCAGTGTGATTCACAGAAGGGACCGGGGTTAAAA
s panTro4.chr19              59089756 117 +  63644993 ggagggagggaggaaggAAAGAAACTAGGAGATAGCTGTGGCACTTTAGCTACAATTTGATGGTGGTCTGGCCTAGGGAGGAAGCAGTGTGATTCACAGAAGGGACCGGGGTTAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966820  90 +  60714840 ggagggaggaaggAAAGAAAGAAACTAGGAGATAGCTGTGGTACTTTAGCTACAACATGATGGTGGGCTGGCCTAGAGAG---------------------------GGGGTTAAAA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60026555 117 +  64156825 ggaggaagggaggaaggaaagaaactaggagatagttgtggaactttagctacaacatgatggtgatctggcctagggaggaagcagtgTGATTCACAGAAGGGACCAGGGTTAAAA
i rheMac3.chr19             I 1155 C 0
s papAnu2.chr19              47153583 117 +  51301725 ggaggaagggaggaaggaaagaaactagGAGATAGCTGCAGAACTTTAGCTACAACATGATGGTGATCTGGCCTAGGGAGGAAGCAGTGTGATTCACAGAAGGGACCGGGGttaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46858208 117 +  50890351 ggaggaagggaggaaggaaagaaactaggagatagctgcggaactttagctacaacatgatggtgatctggcctagggaggaagcagtgTGATTCACAGAAGGGACCNGGGTTAAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45440781 117 +  49145316 ggaggaaggagggaaagaaagaaACTAGGACATAGCTGTGGCACTTTAGCTACAACATGATGGTAGTCTGGCCTAGGGAGGAAGGAGTGTGATTCACAGAAGGGACCAGAGTTAAAA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e nomLeu3.chr10             102736112 360 - 106955855 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=133911.000000
s hg38.chr19_GL949751v2_alt    157180 69 +   1002683 TTTTTATATGTTCAC-AAAGGCCGTATGTTTAGGTCAATGTAGCATGGGAAGATAAAAG--------GAAAAAAAAAA
s panTro4.chr19              59089873 69 +  63644993 TTTTTATATGTTCAC-AAAGACCGCATGTTTAGGTCAATGTAGCATGGGAAGTTAAAAA--------GAAAAAAAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966910 69 +  60714840 TTTTTATATGTTCAC-AAAGACCGTATGTTTAGGTCAATGTAGGGTGGGAAGTTAAAAA--------GAAAAAAAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102736472 69 - 106955855 TTTTTATATGTTCAC-AAAGACCGTATGTTTAGGTCAATGCAACATGAGAAGTTAAAAA--------GAAAAAAAAAT
i nomLeu3.chr10             I 360 C 0
s rheMac3.chr19              60026672 70 +  64156825 TTTTTATATGTTCACAAAAGACCATATGTTTAGGTCAATGTAGCATGGAAAGTTaaaaa--------aaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47153700 78 +  51301725 tttttgtatgttcACAAAAGACCATATGTTTAGGTCAATGTAGCatggaaagttaaaaataaaaaataaaaaagaaac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46858325 76 +  50890351 TTTTTGTATGTTCACAAAAGACCATATGTTTAGGTCAATGTAGCATGGAAAGTTaaaaataaaaa--aaaaagaaaga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45440898 70 +  49145316 TTTTTGTATATTCACAAAATAACACATGTTTAGGTCAATGTAGTATGGGACGTTAAAAA--------TTAAAAAAGGA
i calJac3.chr22             C 0 I 310
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=6360.000000
s hg38.chr19_GL949751v2_alt    157249  7 +   1002683 ----CAAATTA
s panTro4.chr19              59089942 10 +  63644993 -AAACAAATTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966979  9 +  60714840 --AACAAATTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102736541  2 - 106955855 ---------TA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60026742 11 +  64156825 aaaaaaaaTTA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47153778 11 +  51301725 aaaaaaaatta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46858401 11 +  50890351 aagaaaaatta
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e calJac3.chr22              45440968 310 +  49145316 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=606277.000000
s hg38.chr19_GL949751v2_alt    157256 284 +   1002683 AAATaaataaataagaccacatgttgtatgattccatttgtaagcgcaatgtccagaacaggcaaatctttacagatagaaagtcaattactggttaccagggatggatggaggtttgtgggatgatggacatggggtttctttgcagggtatgaaactgttctgaatata-actacacaatggtcatgtctgcacaactcggtgaatatactaaaaatcagggagttgtat----gttttGTGTTTTTTT-----------TTTTTTCCAGGAAATTAAAGAAGCCAAGAGTTGTATGT
s panTro4.chr19              59089952 283 +  63644993 AAATaaataaataagaccacatgttgtatgattccatttataagcgcaatgtccagaacaggcaaatctttacagatagaaagtcaattactggttaccagggatggatggaggtttgcgggatgatggacatggggtttctttgcagggtatgaaactgttctgaatata-actacacagcggtcatgtctgcacaactctgtggatataccaaaagtcagggagttgtat----gttttGTGTTTTTTT-----------TTTCC-CCAGGAAATTAAAGAAGCCAAGAGTTGTATGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55966988 284 +  60714840 AAATaaataaataagaccacatgttgtatgattccatttataagcgcaatgtccagaacaggcaaatctttacagatagaaggtcaattactggttaccagggatggatggaggtttgcgggatgatggacatggggtttctttacagggtatgaaactgttctgaatata-agtacacagtggtcatgtttgcacaactctgtggatatactaaaaatcagggagttgtaT----GGTTGTTGTTTTTTT-----------TTTTTTTCAGGAAATCAAAGAAGCCAAGAGTTGTATGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102736543 288 - 106955855 AAATaaataaataagaccacgtgttgcatgattccatttataagtgcaatgtccagaacaggcaaatctttacagatagaaagtcaattactggttaccagggatggatggaggtttgcgagatgatggatatggggtttctttgcagggtatgaaactgttctgaatata-actacacagtggtcatgtttgcacaactctgtggatatactaaaaatcagggagttgtaTGTTGGtttttttttttttt-----------tttttttCAGGAAATCAAAGAAGCCAAGAGTTGTATGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60026753 286 +  64156825 AAATaaataaataagaccacatattgtgtgattccatgtgtaagtacaatgtccggaacaggcaaatctttacagatagaaagtcaattactggtttccagggatggatggaggtttgggggatgacggatatggggtttctttgcagggtatgaaattgttctgaaaatacactacacagtggtcatgtttgcacaactccgtggatatactaaaaatcagggagttgtaT----GTTGGTTTTTCTTTTC----------TTTTTTTCAGGAAATCAAAGAAGCCAAGAGTTGTATGT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47153789 293 +  51301725 aaat-aataaataagaccaCATGTTGTGTGATTCCATGTGTAAGTACAATGTCCGGAACAGGCAAATCTTTACAGATAGAAAGTCAATTACTGGTTTCCAGGGATGGATGGAGGTTTGGGGGATGACGGATATGGGGTTTCTTTGCAGGGTATGAAATTGTTCTGAAAATA-ACTACACAGTGGTCATGTTTGCACAACTTCGTGGATATACTAAAAATCAGGGAGTTGtat----gttggtttttcttttcttttctttt-tttttttcaggaaatcaAAGAAGCCAAGAGTTGTATGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46858412 296 +  50890351 aaaTaaataaataagaccacctgttgtgtgattccatgtgtaagtacaatgtccggaacaggcaaatctttacagatagaaagtcaattactggtttccagggatggatggaggtttgggggatgatggatatggggtttctttgcagggtatgaaattgttctgaaaatgcactacacagtggtcatgtttgcacaactccgtggatgtactaaaaatcagggagttgtaT----GTTGGtttttcttttcttttcttttctttttttCAGGAAATCAAAGAAGCCAAGAGTTGTATGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45441278 268 +  49145316 aaataaataaataaGA-cacaggttgtatgactccatttgtgagcacaatgtccagaacaggcagatctttacagacaggaagtcaagcagtgctttccagagacggacggcggtttgggggatgacagatctggggtttctttgcagggtgtgaaactgttgtgaaaata-actacacagtggtcatgtttgtacaactcggcggatatactaaaagtcagggaattTTTT------------------------------TTTTTTTTACAGAATCAAAGCAGCCAAGAGTTGTGTGT
i calJac3.chr22             I 310 I 322
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=210795.000000
s hg38.chr19_GL949751v2_alt    157540 155 +   1002683 TTTAAGTGGATGAGTATGTGAATTAGAGTTCCCTAAAGCTGTTATTGG-------AAAAAAAACCTTTGATGAGGTAAACATTAATGAAAAATATTTTCTTTTTAAAATTT--Cacatatatatacacatacacacatacata----tatatacacacatgcacacac
s panTro4.chr19              59090235 155 +  63644993 TTTAAGTGGATGAGTATGTGAATTAGAGTTCCCTAAAGCTGTTATTGG-------AAAAAAAACCTTTGATGAGGTAAACATTAATGAAAAATATTTTCTTTTTAAAATTT--Cacatatatatacacatacacacatacata----tatatacacacatgcacacac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967272 144 +  60714840 TTTAAGTGGATGAACATGTGAATTAGAGTTCTCTAAAGCTGTTATTGG------AAAAAAAAACCTTTGATGAGGTAAACA------AAAAATATTTTCTTTTTAAAATTT--Cacatatatatatatacacacacacacaca----catat------atatacacac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102736831 158 - 106955855 TTTAAGTGGATGAATATGTGAATTAGAATTCCCTAAAGCTTTTATTGGAAAAAAAAAAAAAAACCTTTGATGAGGTATACATTAATGAAAAATATTTTCTTTTTAAAATTT--cac----atatacacacacacacatacata----tatatacacacatgcacacac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60027039 144 +  64156825 TTTAAGTGGATGACTATGTGAATTAGAGTTCCCTAGAGCTGTTATTGG-------AAAAAAAA-CTTTGATGAGGTAAACATTAATGAAAATT------TTTTTAAAATTT--cacatatatatacatatatatacaca--------tatatatacacacgcacacac
i rheMac3.chr19             C 0 I 323
s papAnu2.chr19              47154082 154 +  51301725 TTTAAGTGGATGACTATGTGAATTAGAGTTCCCTAAAGCTgttattgg-------aaaaaaaa-ctttGATGAGgtaaacattaatgaaaaat------ttttttaaatttcacacatatatatacatatatatacacacacacacgtatatataaatatgtatacat
i papAnu2.chr19             C 0 I 292
s chlSab2.chr6               46858708 144 +  50890351 TTTAAGTGGATGACTAGGTGAATTAGAGTTCCCTAAAGCTGTTATTGG-------AAAAAAAA-CTTTGATGAGGTAAACATTAATGAAAAAT------TTTTTTGAATTT--CACacatatatatacatatatacaca--------tatatatacacatgcacacac
i chlSab2.chr6              C 0 I 324
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e calJac3.chr22              45441546 322 +  49145316 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=16845.000000
s hg38.chr19_GL949751v2_alt    157695 9 +   1002683 acatacata
s panTro4.chr19              59090390 9 +  63644993 acatacata
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967416 9 +  60714840 acatacata
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102736989 9 - 106955855 acatacGTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60027506 9 +  64156825 acatacata
i rheMac3.chr19             I 323 C 0
s papAnu2.chr19              47154528 9 +  51301725 acatacata
i papAnu2.chr19             I 292 C 0
s chlSab2.chr6               46859176 9 +  50890351 acatacata
i chlSab2.chr6              I 324 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e calJac3.chr22              45441546 322 +  49145316 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=24545.000000
s hg38.chr19_GL949751v2_alt    157704 13 +   1002683 tgtattttttgag---
s panTro4.chr19              59090399 13 +  63644993 tGTAttttttgag---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967425 13 +  60714840 TGTAttttttgag---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102736998 13 - 106955855 TGTATTTTTTGAG---
i nomLeu3.chr10             C 0 I 303
s rheMac3.chr19              60027515 13 +  64156825 tatattttttgag---
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47154537 13 +  51301725 tatattttttgag---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46859185 13 +  50890351 tatattttttgag---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45441868 16 +  49145316 tgtatttttagtagag
i calJac3.chr22             I 322 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=287524.000000
s hg38.chr19_GL949751v2_alt    157717 146 +   1002683 atggagtcttgctctgttgcccaggatggagtgcagtggtgtgatcttggctcactgcaaactccgtctcgtgggttcaagcgattctccagtttcagcctcccaagtagctgggattacaggcacacaccaccatgcccgg-ctaa
s panTro4.chr19              59090412 146 +  63644993 atggagtcttgctctgttgcccaggatggagtgcagtggtgcgatcttggctcactgcaacctccgcttcttgggttcaagcgattctccagtttcagcctcccaagtagctgggattacaggcacactccgccatgcccgg-ctaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967438 146 +  60714840 atggagtcttgctctgttgcccaggatggagtgcagcggtgcaatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgtctcagcctcccaagtagctgggattacaggcacacaccaccatgcctgg-ttaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102737314 146 - 106955855 atggagtcttgctctgttgcccaggatggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgtctcagcctcccaagtagctgggattacaggtatacaccaccatgcctgg-ctaa
i nomLeu3.chr10             I 303 C 0
s rheMac3.chr19              60027528 146 +  64156825 acggaatcttgctcttttgcccaggctggagtgcagtggtgcaatctcggctcactgcaacctctgcctcctgggttcaagcgattctcctgtctcagcctcccaagtagctgggattacaggcgcacaccaccatgcccgg-ctaa
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47154550 146 +  51301725 acggaatcttgctcttttgcccaggctggagtgcagtggtgcaatctcgcctcactgcaacctccgcctcctgggttcaagcgattctcccgtctcagcctcccaagtagctgggattacaggcgcacaccaccatgcccgg-ctaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46859198 146 +  50890351 acggaatcttgctcttttgcccaggctggagtgtagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgtctcagcctcccaagtagctgggattacaggcgcacaccaccatgcccgg-ctaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45441884 114 +  49145316 acggggtttcaccatgttgaccaggatgg-------------------------------tctcaatctcttgacctc--gtgatccactcgcctcagcctcccaaagcgctgggattataggcgtgagccaccgcacccggcctaa
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3686296 1637 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=359034.000000
s hg38.chr19_GL949751v2_alt    157863 138 +   1002683 tttttgtattttcagtagagacggggtttcaccatgttggccaggctggtctcaaactc---------------ctgacctca-----ggtgatctgcctgtctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccctttt
s panTro4.chr19              59090558 138 +  63644993 tttttgtattttcagtagagacggggtttcaccatgttggccaggctggtctcaaactc---------------ctgacctca-----ggtgatctgcctgtctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccCtttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967584 138 +  60714840 tttttgtattttcagtagagacggggtttcaccgtgttggccaggctggtctcaaaccc---------------ctgacctca-----ggtgatctgcctgtctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccCtttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102737460 138 - 106955855 tttttgtattttcagtagagatggggtttcaccatgttggccaggctggtctcaaactc---------------ctgacctca-----ggtgatctggctgtctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccCTTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60027674 136 +  64156825 tttctgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctc---------------ctgacctt-------gtaatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagtcactgcgcccggccCtttt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47154696 138 +  51301725 tttctgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactc---------------ctgacctta-----ggagatctgcccgtctcggcctcccaaagtgctgggattacaggcgtgagtcactgcgcccagccctttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46859344 138 +  50890351 tttctgtatttttagtagagatgggatttccccatgttggccaggctggtctcaaactc---------------ctgacctta-----ggagatctgcccgtctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccctttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45441998 138 +  49145316 tttttgtatttttaatagagatagggtttctccatgttggccagcctggtctcaaaccc---------------ctgacctca-----ggtgatccacctgccttagcctcccaaagtgctgggattacaggcatgagccactacacccagccCTTTT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3687933 157 + 145441459 tttttttttttttttccgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctccc-gagtgctgggattaaaggcttgcgccaccatgcctggctctctg
i mm10.chr7                 I 1637 I 128
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=329562.000000
s hg38.chr19_GL949751v2_alt    158001 152 +   1002683 aattttatatttatttattttttaAAAATAAAGGTTTAAAATAAagggacgggatcttgctatgttggccaagttgatcttgaacttttggcctcaagcaatcctctcgcctcagcctccgaaagtgctaggattataggcataagccccca
s panTro4.chr19              59090696 152 +  63644993 aattttatatttatttattttttaaaaataaaGGTTTAAAATAAagggacgggatcttgctatgttggccaagttgatcttgaactcttggcctcaagcaatcctctcgcctcagcctccgaaagtgctaggattataggcataagccccca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967722 152 +  60714840 aattttatatttatttatttttttaaaataaaGGTTTAAAATAAagggacgggatcttgctatgttgcccaagttgatctcgaactcttggcctcaagcaatcctctcgcctcagcctcccaaagtgctaggattataggcataagccccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102737598 152 - 106955855 AATTTTATATTTGTTTATTTTTTTAACATAAAGGTTTAAAATAAagggacgggatcttgctatgttggccaagttgatcttgaactcttggtttcaagcaatcctctcacctcagcctcccaaagtgctaggattataggcataagccccca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60027810 152 +  64156825 aattttatatttatttatttttttaaaataaaGGTTTAAATTAAagagacgggatcttgctacattggccaagtggatcttgaactcttggcctcaagccatcctctggcctcagcctcccacagtgctgagattataggcgtcagtcccca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47154834 152 +  51301725 aattttatatttatttatttttttaaaataaaggtttaaaataaaGGGACGGGATCTTGCTACATTGGCCAAGtggatcttgaactcttggcctcaagccatcctctggcctcagcctcccacagtgctgagattataggcgtcagTCCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46859482 152 +  50890351 aattttatatttatttatttttttaAAATAAAGGTTTAAAATAAagggacgggatcttgctacgttggccaagtggatcttgaactcttggcctcaagccatcctctggcctcagcctcccacagtgctgagattataggcgtcagtcccca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45442136 134 +  49145316 AATtttatatttattta-----------------tttaaaacaaagggat-ggatcttgctatgttggccagattgactttgaactcttggcctcaggcagtcctctcacctcagcctcccaaagtgctatgattataggcatgagccccca
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688090 128 + 145441459 I
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=20007.000000
s hg38.chr19_GL949751v2_alt    158153 8 +   1002683 cgcccagA
s panTro4.chr19              59090848 8 +  63644993 cgcccagA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967874 8 +  60714840 cacccagA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102737750 8 - 106955855 agcccagA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60027962 8 +  64156825 cgcccagA
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47154986 8 +  51301725 CGCCcaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46859634 8 +  50890351 cacccagA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45442270 8 +  49145316 cgcccagc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3688218 8 + 145441459 TGCCTGGA
i mm10.chr7                 I 128 C 0
e canFam3.chr1               19645098 1485 - 122678785 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=1434208.000000
s hg38.chr19_GL949751v2_alt    158161 519 +   1002683 TGAAAA---ATATTTCCTTAAGCTGAAAGTGGACCCTAAGCCGTGAATATTTGTTGTCTGGGAAGCAAAAACATCAGGTTGACATAGATCTTTACCTCCTTTATCTCTTCTCTTTGCTCCCAATACGCTACAAG----GAGAAGAGCAAGGAATTGCTTAGGTTGag-acagccagcttctaccccaaagcagctctggtccagcggaggtgtgagacgtagacccagac--acatgccca-ccctcacag--cagcagatgctaggatggaggttgccctgggcagggcgGG------AACACACAACAGGCACTCAGGGCGGAAGGGGACACAGGA--GACAGAGCGGCAGAGT--------TGTTAGGGCAGCCCCACTCACCTGTCATGATTCCCACGTAGCAGTAGCTGTAGCTGAGTGTCTCCATCAGGGAGGGCACGTCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAGCCTGAGGCCATTTCCTTCCTCTGGGCCAGATGCAGGTCCTGGACTTCACTGGCCAGGCTCACCAGCTG
s panTro4.chr19              59090856 527 +  63644993 TGAAAA---ATATTCCCTTAAACTGAAAGTGGACCCTAAGCTGTGAATATTTGTAGTCTGGGAAGCAAAAACATCAGGTTGACATAGATCTTTACCTCCTTTATCTCTTCTCTTTGCTCCCAATACGCTACAAG----GAGAAGAGCAAGGAATCGCTTAGGCTGag-acagccagcttctaccccaaagcagctctggtccagcggaggtgtgagacgtagacccagac--acatgccca-ccctcacag--cagcagatgctaggatggaggttgccccgggcagggcgGG------AACACAGAACAGGCACTCAGGGCGGAAGGGGACACAGGA--GACAGAGCGGCAGAGTGGCACAGCTGTCAGGGCAGCCCCACTCACCTGTCATGATTCCCACGTAGCAGTAGCTGTAGCTGAGCGTCTCCATCAGGGAGGGCACATCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAGCCTGAGGCCATTTCCTTCCTCTGGGCCAGGTGCAGGTCCTGGACTTCACTGGCCAGGCTCACCAGCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55967882 525 +  60714840 TGTAAA---ATATT-CCTTAAACTGAAAGCGGACCCTAAGCTGTGAATATTTGTTGTCTGGGCAGCAAAAACATCAGGTTGACATAGATCTTTACCTCCTTTATCTCTTCTCTTTGCTCCCAATATGCTACAAG----GAGAAGAGCAAGGAATCACTTAGGCTGagaacagccagcttctaccccaaagcagctctggtccagcggaggtgtgagatgtagacccagac--acatgctca-ccctcacag--cagcagatgctaggatggaggctgccccggggagggtgGA------AACACAGAACAGGCACTCAGGGCGG-AGGGGACACAGGA--GACAGAGTGGCAGAGTGGCAGAGCTGTCAGGGCAGCCCCACTTACCTGTCATGATTCCCACGTAGCAGTAGCTGTAGCTGAGCGTCTCCATCAAGGAGGGCACGTCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAGCCTGAGGCCATTTCCTTCCTCTGGGCCAGGTGCAGGTCCT-GACTTCACTGGCCAGGCTCACCAGCTG
i ponAbe2.chr19             C 0 I 352
s nomLeu3.chr10             102737758 520 - 106955855 TGAAAA---ATATTTCCTTAAACTGAAAGTGGACCCTAAGCTGTGAATATTTGTTGTCTGGGCAGCAAAAATATCAGGTTGACATAGATCTTTACCTCCTTTATCTCTTCTCTTTGCTCCCAATACGCTACAAG----GAGAAGAGCAAGGAATCGCTTAGGCTGagaacagccagcttctaccccaaagcagctctggtccagcggaggtgtgacacgtagacccagac--acgtgctca-ccctcacag--cagcagatgctaggatggaggttgccccgggcagggcgGG------AACACAGAACGGGCACTCAGGGCAGAGGGGGACACAGGT--GACAGAGTGGCAGAGC--------TGTCAGGGCAGCCCCACTCACCTGTCATGATTCCCACGTAGCAGTAGCTGTAGCTGAGCGTCTCCATCAGGGAAGGCACGTCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAGCCTGAGGCCATTTCCTTCCTCTGGGCCAGGTGCAGGTCCTGGACTTCACTGGCCAGGCTCACCAGCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60027970 507 +  64156825 TGAAAA---ATATTTCCTTAAACTGAAAGTGGACCCTAAGCTGTGAATATTTGTTATCTGGGCAGCAAAAACATTAGGTTGACATAGATCTTTACCTCCTTTCTCTCTTCTCTGTGCTCCCCATAAGCTACAGGAGAAGAGAAGAGCAAGGAATCACTTAGGCTGagaacagccagcttctaccccaaagcagctctggtccagcggaggcgtgagacgtagacccagac--acatgctca-ccctcacag--cagcagatgctaggatggaggttgccccgggcagggcgGG------AACATAGAACAGGCACTCAGGGCGG------------------CGGAGAGACAGAGC--------TGCC-GGGCAGGCCCACTCACCTGTCATGATTCCCACGTAGCAGTAACTGTAGCTGAGCGTCTCCATCAAGGAGGGCACGTCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAACCCGAGGCCATTTCCTTCCTCTGGGCCAGGTGCAGGTCCTGGACTTCACTGGCCAGGCTCACCAGCTG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47154994 507 +  51301725 tgaaaa---atatttccttaaactGAAAGTGGACCCTAAGCTGTGAATATTTGTTATCTGGGCAGCAAAAACATCAGGTTGACATAGATCTttacctcctttctctcttctctgtgctCCCCATAAGCTACAGGAGAAGAGAAGAGCAAGGAATCACTTAGGCTGAGAACAGCCAGCTTCCACCCTGAAGCAGCTCTGGTCCAGCGGAGGCGTGAGACGTAGACCCAGAC--ACATGCTCA-CCCTCACAG--CAGCAGATGCTAGGATGGAGGTTGCCCCGGGCAGGGCGGG------AACATAGAACAGGCACTCAGGGTGG------------------CGGAGAGACAGAGC--------TGTC-GGGCAGGCCCACTCACCTGTCATGATTCCCACGTAGCAGTAACTGTAGCTGAGCGTCTCCATCAAGGAGGGCACGTCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAACCCGAGGCCATTTCCttcctctgggccaggtgcaggtCCTGGACTTCACTGGCCAGGCTCACCAGCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46859642 507 +  50890351 TGAAAA---ATATTTCCTTAAACTGAAAGTGGACCCTAAGCTGTGAATATTTGTTATCTGGGCAGCAAAAACATCAGGTTGACATAGATCTTTACCTCCTTTCTCTCTTCTCTGTGCTCCCCATAAGCTACAGGAGAAGAGAAGAGCAAGGAATCACTTAGGCTGagaacagccagcttctaccccgaagcagctctggtccagcggaggcgtgagacgtagacccagac--acatgctcg-ccctcacag--cagcagatgctaggatggaggttgccccgggcagggcgGG------AACACAGAACAGGCACTCAGGGCGG------------------TGGAGAGACAGAGC--------TGTC-GGGCAGGCCCACTCACCTGTCATGATTCCCACATAGCAGTAACTGTAGCTGAGCGTCTCCATCAAGGAGGGCACGTCGGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAACCCGAGGCCATTTCCTTCCTCTGGGCCAGGTGCAGGTCCTGGACTTCACTGGCCAGGCTCACCAGCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45442278 491 +  49145316 TGAAAA---ATATTTCCTTAAACTAAAAGTGGACCCTAAAT----------------------------------------ACACAGACCTTTGCCTCCTTTATCTCTTCTCTTTGCTGCCAATAAGCTACAAC-AAGGAGAAGAGCAAGGAATCACTTAGGCTGAGAAGAGCCAGCCTCCACCCCAAGGCACTTCTGGTCCAGTGGAGGTGTGAGACTTGGATCCACAT--ACATGCTCA-CCCTCACAG--CAGCGGACGCTAAGATGGAGCTTGCCCCGGGCAGGGTGGG------AACACAGAATAGGCACCCAGGGAGGAGGGAAACACGGGA--GACAGAGCGGCGCAGCGGCAGAGCTGTCCCGGCAGGCCCACTCACCGGTCATGATTCCCACGTAGCAGTAGCTGTAGCTGAGCGTCTCCATCAAGGAGGGCACGTCAGGCAGCAGCCCCAGGGTGGGCCCCTTGCTGAAGCCCGTGGCCATTTCCTTCCTCTGGGCTAGGTGCAGGTCCTGGACTTCACTGGCCAGGCTCACCAGCTA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3688226 459 + 145441459 GGGAAAGATACATTTTCTGAAATGGAAA---GATCCTGGGTTAGGAATATTTACTCCATGGATGGCAGAAAC-CCAGGTTTACATAGGCC--TATCTCCTTTAACTCTCCTATTGGCCCCCTA------ACAGG----AGAAAAAGGAAGCAATCCTTCAGGATTAG--------------TTCCCACAGTAG---------------------------------ACAG--ATATGCT-----CTGACAGGACAGTAGCTGACAGAGTGTAGGTAGCCTAGGACAGAGCCGGGGACATAACACAGGAACAGAACTCTGGGTAGATCGAGGCAGAGGA-TGACCCAGAG---------------TGCT-GGGCAGG--CACTCACCTGTCATGATTCCCACGTAACAGTAGCTATAGCTGAGTGTCTCCATCAAAGAGGGGACCTCAGGCAGGAGGCCCAGCGTAGGCTCCTTGTGGAAGCCGGAGGCTATTTCCTTTCTCTGAGCCAGATGCAGATCCTGGACTTCACTAGCTAGACTCACCAACTG
i mm10.chr7                 C 0 I 2
s canFam3.chr1               19646583 479 - 122678785 TGGAAA---CTACCTCCTGAGGCT-AACGTGG-----GAGTGGAATGTATTTATTCCCTGCATGGCAGAAACCTCAGGCTTCCATAGGTCATT--CTCCCTCATCTC--CTATTTGTTCCCAAGAAGCCACAGG----------------AAATCATTTAGGCGGAGAACAGTCTGTCTCTACTCTGGAGGAG--------CAGCGGGAAAGCTTGACATAAACCCAGGCCTAGATGCTCATCCTTTAGAG--GAGCAGACACTGGGATGGAG---------------GCAGG------AACACAGGGCAGGCACCAAAGTCAGGGTGCAGAATGGAGCCGAGAGGGTGACGGGAT--------GGGG-GCACAGGCACACTCACCTGTCATGATTCCTACGTAGCAGTAGCTGTAGCTGAGTGTCTCCATCAGGGAGGGGACGTCAGGCAGGAGCCCCAGGCTGGGCCCCTTGCTGAAACCTGAGGCCATTTCCTTCCTCTGGGCCAAGTGCAGGTCCTGTACTTCACTGGCCAGGCTCACCAGCTG
i canFam3.chr1              I 1485 C 0
e macFas5.chr19              55048529 6096 +  59248254 I

a score=9000.000000
s hg38.chr19_GL949751v2_alt    158680 2 +   1002683 GG
s panTro4.chr19              59091383 2 +  63644993 GG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55968759 2 +  60714840 GG
i ponAbe2.chr19             I 352 C 0
s nomLeu3.chr10             102738278 2 - 106955855 GG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60028477 2 +  64156825 GG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47155501 2 +  51301725 GG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860149 2 +  50890351 GG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45442769 2 +  49145316 GG
i calJac3.chr22             C 0 I 20
s mm10.chr7                   3688687 2 + 145441459 GG
i mm10.chr7                 I 2 C 0
s canFam3.chr1               19647062 2 - 122678785 GG
i canFam3.chr1              C 0 C 0
e macFas5.chr19              55048529 6096 +  59248254 I

a score=119831.000000
s hg38.chr19_GL949751v2_alt    158682 59 +   1002683 CAGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTCTGGGCCCTTCCCCACACCCATCTCC
s panTro4.chr19              59091385 59 +  63644993 CAGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTCTGGGCCCTTCCCCACACCCATCTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55968761 59 +  60714840 CGGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTCTGGGCCCTTCCCCATACCCATCTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738280 59 - 106955855 TGGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTCTGGGCCCTTCCCCACACCCATCTCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60028479 59 +  64156825 CGGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTTTGGGCCCTTCCCCACACCCATCTCC
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47155503 59 +  51301725 CGGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTTTGGGCCCTTCCCCACACCCATCTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860151 59 +  50890351 CAGAAGGGGGTGGGCAAGGGGC-----CAGGTCAGACTTTGGGCCGTTCCCCACACCCATCTCC
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3688689 55 + 145441459 AAGAGAGAGGAAGGCAAGTGAT-----TGG---CGTCCCCAGGCCA-CCTTCACATCCACTTTC
i mm10.chr7                 C 0 I 1564
s canFam3.chr1               19647064 57 - 122678785 -AGCAGGGGGCACACGTAGGGTACAGACACATCAGACAACAGGACC-TCCTCGCCCCCA-----
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45442771 20 +  49145316 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=12201.000000
s hg38.chr19_GL949751v2_alt    158741 8 +   1002683 CTTGCGCG
s panTro4.chr19              59091444 8 +  63644993 CTTGCGCG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55968820 8 +  60714840 CTTGCGCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738339 8 - 106955855 CTTGCGCG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60028538 8 +  64156825 CTTGTGCT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47155562 8 +  51301725 CTTGTGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860210 8 +  50890351 CTTGTGCT
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647121 0 - 122678785 C
e calJac3.chr22              45442771 20 +  49145316 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=841860.000000
s hg38.chr19_GL949751v2_alt    158749 403 +   1002683 GCTGCCCTCGGCAGCCAAGGGGTGCT-------GGGTGCCC--------------------------G-CAGCTCTGCCCATCT--------AGGTTGTGT-GTAACGCCTCTAGCTGGGCggtgttccccagggctcagtcccaggccctcc--tccc--ctttccctgttctgtgcttacctgctctcacgcaatcacggaggtttcgatactatccacacgctgaggacgcccaaacgcta----------------------ccccag-ccccagacctatccaatcaagtggcttattggcatttatactcggatgtct-ccaggcacccc-----aaacgcactggaaacggaacatgatgttacccaccccacaaggtagaccctcttctagtgtctcccctcaaacaacaggccacca--------aattgttcaagccaaaaat--------ctCCCTCACTCCCCAAATCCGATCCTTTAAtctc
s panTro4.chr19              59091452 402 +  63644993 GCTGCCCTCGGCAGCCAAGGGGTGCT-------GGGTGCCC--------------------------G-CAGCTCTGCCCATCT--------AGGTTGTGT-GTAACGCCTCTAGCTGGGCggtgttccccagggctcagtcccaggccctcc--tccc--ctttccctgttccgtgcttacctgctctcatgcaatcacggaggtttcgatactatccacacgctgaggatgcccaaacgcta----------------------ccccag-ccccagacctatcca-tcaagtggcttattggcatttatactcggatgtct-ccaggcacccc-----aaacgcactggaaacggaacatgatgttacccaccccacaaggtagaccctcttctagtgtctcccctcaaacaacaggccacca--------aattgttcaagccaaaaat--------ctCCCTCACTCCCCAAATCCGATCCTTTAATCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55968828 401 +  60714840 GCTGCCCTCAGCAGCCAAGGCGTGCT-------GGGTGCCC--------------------------G-CAGCTCTGCACATCT--------AGGTTGTGT-GTAACGCCTCTAGCTGGGCggtgttccccagtgctcagccctaggccctcc--tcccctctttccctattccatgcttacctgctctcactcaatcacggaggtttcgatattatccacacgctgaggatgcccaaacgcta----------------------ccccag-ccccagacctatcca-tcaagtggcttattggcatttatactccgatgtct-ccaggcacccc-----aaacgcactggaaacagaacacgatgttacccaccccacaaggtagatcctcttctagtgtctcccctca---aataggccacca--------aattgttcaagtcaaaaac--------ctCCCCCACTCCCCAAATCCAAtcttttaatctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738347 403 - 106955855 GCTGCCCTCGGCAGCCAAGGGGTGCT-------GGGTGCCC--------------------------A-CAGCTCTGCACATCT--------AGGTTGTGT-GTAACGCCTCTAGCTGGGCggtgttccccagtgctcagtcccaggccctcc--tcccctctttcccttttccgtgcttacctgctctcacgcaatcgcggaggtttcgatactatccacacgctgaggatgcccaaacgcta----------------------ccccag-ccccagacctatcca-tcaaatggcttattggcatttatactcggatgcct-ccaggcacccc-----aaatgcaccggaaacggaacacgatgttacccaccccacaaggtagatcctctt-tagtgtctcccctcaaacaacaggccacca--------aattgttcaagccaaaaac--------ctCCCTCACTCCCCAAATCCAATCCtttaatctt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60028546 399 +  64156825 GCTGCCCTCTGCAGCCAAGGGGTGCT-------GCATGCTC--------------------------G-CAGCTCTGCGTATCT--------AGGTTGTGT-GTAACGCCTCTAGCTGGGCagtgctccccagggctcagtcccaggccctcc--tccccgccttccctgttctgtccttacctgctctcaggcagtcccagaggtttcgatactatccacacactgatgatgctcaaacgcta----------------------ccccag-ccccagacctatcca-tcaagtggcttattggcatttagactcggatgtct-ccaggcacccca----aaacgcactggaaacggaagacgatgttacctgccccacaaagtagatcctcttctagtgtctcccctgaaacaataggccacca--------aattgttcaaacccaaaac--------ctCCCTCACTCCCCAAATCCGAtctctt------
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47155570 405 +  51301725 GCTGCCCTCTGCAGCCAAGGGGTGCT-------GCATGCTC--------------------------G-CAGCTCTGTGTATCT--------AGGTTGTGT-GTAACGCCTCTAGCTAGGCAGTGTTCCCCAGAGCTCAGTCCCAGGCCCTCC--TCCCCGCCTTCCCTGTTCTGTCCTTACCTGCTCTCAGGCAGTCACAGAGGTTTCGATACTATCCACACACTGATGATGCTCAAACGCTA----------------------CCCCAG-CCCCAGACCTATCCA-TCAAGTGGCTTATTGGCATTTAGACTCGGATGTCT-CCAGGCAccgca----aaatgcactggaaacgGAAGACGATGTTACCCGCCCCACAAAGTAGATCCTCTTCTAGTGTCTCCCCTGAAACAACAGGTCACAA--------AATTGTTCAAACCCAAaacctccctcactccctcactcCCCAAATccgatctc--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860218 403 +  50890351 GCTGCCCTCTGCAGCCAAGGGGTGCT-------GCATGCTC--------------------------G-CAGCTCTGCATATCT--------AGGTTGTGT-GTAAGGCCTCTAGCTGGGCAGTgttccccagggct--gtcccaggccctcc--tccctgccttccctgttctgtccttacatgctctcaggcagtcacagtggtttcgatactatccatacactgatgatgctcaaacgcta----------------------ccccag-ccccagacctatcca-tcaaatggcttattggcatttacactcagatgtct-ccaggcaccaca----aaacgcactggaaacggaagacgatgttacccgccccacaaagtagatcctcttctagtgtctcccctgaaacaataggccacca--------aattgttcaaacccaaaacctcccttactccctcactccccaaatccgatcTC--------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45442791 374 +  49145316 GCTGCCCTCTGCAGCCACAGGGTGCT-------GGGCACCC--------------------------ACCAGCTTTGCACCCCA--------AGGTTGTTT-GTAAAGGCCGTATC-GGACagtg-tctccagggctgagtcccaggcattcc--tccc--ctttccccattccatccttacctgctctcacacaatcacggagctttagatactaccca-----------------------------------------------cccag-ccccagacctatcca-ggtaatggcttattggcatcgatacgtggatgtct-cta-gcacttc-----aaaagcactggaaacagaagacgatgttaccca-cccacaaagcagaccctcttctagtctctcccctcaaacaaaaggccaccg--------aattgttcaagctgaaaac--------ctCCCTCGATCCCCAAATCCTATCCCTTAACCtc
i calJac3.chr22             I 20 I 294
s canFam3.chr1               19647121 456 - 122678785 -CTCCTCTCAGCAGCCAAGGGGTGCTGCGGCCAGCGTGCCACTAGGAGCCGAGCTTCTATTCCAGGGG-CAGCTCTGGGCCTCTGGAATCAGAGGTGGCCCGGTAGCAGCTTCTGCTAGCTGAGGGCTTTGGGCACTCCCTTCTGGGcccttccatctctctgttcccccttccaggttcttctgtcct----------ctgtggctt-gataccagccacgatctcatgacctccacaaactgtatccttagtctgggttcctccctccagcccccaaaaccactca---gggtgactc-ctgtcattaggacttggatgcctgccaggttcctcagactcgacacatccagagtggagcgttgtgctactcactccacagagcgggtcccctcccag----tcccctcag--caaaggccaccagcagcctgaactgctcagaccaggaac--------ctGCCTTACTTCCCAGATCTGATCCC--------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=-4554.000000
s hg38.chr19_GL949751v2_alt    159152 12 +   1002683 tct------ttttttttt
s panTro4.chr19              59091854 18 +  63644993 tctctctttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969229  7 +  60714840 tct-----------tttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738750  4 - 106955855 ttt--------------t
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60028945  5 +  64156825 --t-----------tttt
i rheMac3.chr19             C 0 C 0
s chlSab2.chr6               46860621  1 +  50890351 -----------------G
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647577  0 - 122678785 C
e calJac3.chr22              45443165 294 +  49145316 I
e papAnu2.chr19              47155975  0 +  51301725 C
e macFas5.chr19              55048529 6096 +  59248254 I

a score=238135.000000
s hg38.chr19_GL949751v2_alt    159164 111 +   1002683 tttttttttttgagacaagttttg--ctctgtcaccca-----ggctggagtatactggtgtgatctcggctcactgcaacccccacctcctgggggcgcaagcaattctcatgcctc
s panTro4.chr19              59091872 111 +  63644993 tttttttttttgagacaagttttg--ctctgtcaccca-----ggctggagtatagtggcgtgatctcggctcactgcaacctccacctcctgggggctcaagcaattctcatgcctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969236 111 +  60714840 ttttcttttttgagacaagttttg--ctctgtcaccca-----ggctggagtatagtggcgcgatctcggctcactgcaacctgtgcctcctggaggctcaagcagttctcatgcctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738754 110 - 106955855 tttttttttttgagacaagttttg--ctctgtcaccca-----ggctggagcatagtggcgc-atctcagctcactgcaaactccgcctcctgggggctcaagcaattctcatgcgtc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60028950 109 +  64156825 tttttttttttgagacaagttttg--ctctgtcaccca-----ggctggagtagagtggcaca--gtcggctcactgcaacctccgcctcctggggactcaagcaattctcatgcctc
i rheMac3.chr19             C 0 I 26
s papAnu2.chr19              47155975 111 +  51301725 tttttttttttgagacaagttttg--ctctgtcaccca-----ggctggagtagagtggcacgatgtcggctcactgcaacctccgcctcctggggactcaagcaattctcatgcctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860622 111 +  50890351 tttttttttttgagacaagttttg--ctctgtcaccca-----ggctggagtagagtggcacgatgtcggctcactgcaacctccgcctcctggggactcaagcaattctcatgcctc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443459 103 +  49145316 tctttctttttgagacaagtttta--ctctgtcgccca-----ggctggagta--------tgatcttggctcactgccaccttcccctcccaggggttcaagcaatgctcatgcctc
i calJac3.chr22             I 294 C 0
s canFam3.chr1               19647577  90 - 122678785 --------------GCAGGTCTCGGAGTCTGTCCCCTACACTCCGCTGAGGCTGAATGGGTTCACCCTGGTTCCCTGCCCCCCCCTCCCCC--------------ACCCCCCCTTCTC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=30128.000000
s hg38.chr19_GL949751v2_alt    159275 16 +   1002683 agctggc--caggctggt-
s panTro4.chr19              59091983 16 +  63644993 agctggc--caggctggt-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969347 16 +  60714840 agctggc--cagactggt-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738864 16 - 106955855 agctggc--caggctggt-
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47156086 16 +  51301725 agctggc--caggctggt-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860733 16 +  50890351 agctggc--caggctggt-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443562 16 +  49145316 agctggc--caggctggt-
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19647667 19 - 122678785 TGCAGACCTCAGGCTGAGC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60029059 26 +  64156825 I

a score=125286.000000
s hg38.chr19_GL949751v2_alt    159291 52 +   1002683 ctcgaactcctggcctcaagtgatctgcccgccttgaaatcccTTAAG-TTTG
s panTro4.chr19              59091999 52 +  63644993 ctcgaactcctggcctcaagtgatctgcccgccttgaaatcccTTAAG-TTTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969363 52 +  60714840 ctcgaattcctggcctcaagtgatctgcccgccttgaaatcccTTAAG-TTTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738880 52 - 106955855 ctcgaactcctggcctcaagtgatctgcccgccttgaaatccctgaag-tTTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029085 50 +  64156825 CTCGA--TTCTGGCCTCAAGTAATCGGCCTGCCTTGAAATCCCTTAAG-TTTG
i rheMac3.chr19             I 26 C 0
s papAnu2.chr19              47156102 52 +  51301725 ctcgaacttctggcctcaagtaatcggCCTGCCTTGAAATCCCTTAAG-TTTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860749 52 +  50890351 ctcgaacttctggcctcaagtaatctgcctgccttgaaatcccTTAAG-TTTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443578 53 +  49145316 ctcaaactcctggcctcaagtgatctgcccaccttgaaatcccTTAAGTTTTG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19647686 47 - 122678785 CTACAGCAGCAGGCCTCAGCTGGGCTTCCAGCTT-----CCTCTCAGG-TTTG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=276506.000000
s hg38.chr19_GL949751v2_alt    159343 123 +   1002683 AGTCTGTTGCCTCTTTCCATCTCCACTACTGAGCTGAATATGTTGTACTCTCCACCCTTTCCCACCAGTCCCAAGGTCCACCCTATATCAATAGATCTCCTTCTTCCAGCTTGTGGCTGGGTT
s panTro4.chr19              59092051 123 +  63644993 AGTCTGTTGCCTCTTTCCATCTCCACTACTGAGCTGAATATGTTGTACTCTCCACCCTTTCCCACCAGTCCCAAGGTCCACCCTATATCAATAGATCTCCTTCTTCCAGCTTGTGGCTGGGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969415 123 +  60714840 AGTCTGTTGCCTCTTTCCATCTCCACTACTGAGCTGAATATGTTGTACTCTCCATCCTTTCCCACCAGTCCCAAGGCCCACCctatatcaacagacctccttcttccagcttgtggctggctt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102738932 123 - 106955855 AGTCTGTTGCCTCTTTCCATCTCCACTACTGAGCTGAATATATTGTAGTATCCACCCTTTCCCACCAGTCCAAAGGTCTACCCTATATCAATAGATCTCCTTCTTCCAGCTTGTGGCTGGGTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029135 123 +  64156825 ACTCTGTTGCCTCTTTTCATCTCCACTACTGAGCTGAATATGTTGTactctccaccctttcccaccagtcccaaggtccaccctatatcaatagatctcattcctccagcttgtggctgggtt
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47156154 123 +  51301725 ACTCTGTTGCCTCTTTTCATCTCCACTACGGAGCTGAATATGTTGTACTCTCCACCCTTTCCCACCAGTCCCAAGGTCCACCCTATATCAATAGATCTCGTTCTTCCAGCTTGTGGCTGGGTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860801 123 +  50890351 ACTCTGTTGCCTCTTTTCATCTCCACTACTGAGCTGAATATGTTATACTCTCCAACCTTTCCCACCAGTCCCAAGGTCCACCCTATATCAATAGATCTCGTTCTTCCAGCTTGTGGCTGGGTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443631 121 +  49145316 AGTC--TTGCCTCTTTCCGTCTCCACTAATGAGAGGAGTACGTTGTACTCTCCATCCTTTCCCGCCAGTCCCAAGGTCGGCCCTATATCCACAGGGCTCTGTCTTCCAGCTTCTGGCCAGGGC
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647733   0 - 122678785 C
e macFas5.chr19              55048529 6096 +  59248254 I

a score=291516.000000
s hg38.chr19_GL949751v2_alt    159466 120 +   1002683 GTCAGTAGAAATCCCTGGCTGGA----GACAAAGTCAGG--AGAGGGAGGGTAGGGCTTTTATTCCCTTGTAAGATGGCCTTGGGCTGGCTGTCACCCTT--------GATAGATCATTTCAAGGT----GGGTGGCT
s panTro4.chr19              59092174 120 +  63644993 GTCAATAGAAATCCCTGGCTGGA----GACAAAGTCAGG--AGAGGGAGGGTAGGGCTTTTACTCGCTTGTAAGATGGCCTTGGGCTGGCTGTCACCCTT--------GATAGATCATTTCAAGGT----GGGTGGCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969538 120 +  60714840 gtcaatagaaacccctggctgga----gacgaagtcagg--agagggaggacagggcttttattcccTTATGAGATGGCTTTGGGCTGGCCGTCACCCCT--------GATAGATCATTTCAAGGT----GGGTGGCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739055 120 - 106955855 GTCAATATAAATCCCTGGCTGGA----GACGAAGTCAGA--AGAGGGAGGGCAGGGCTTTTATTCCCTTGTGAGATGGCCTTGGGCTGGCCGCCACTCTT--------GATAGATCATTTCAAGGT----GGGTGGCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029258 124 +  64156825 gtccatagaaatccctggctggagtcggacaaagtcagg--agagggagggcagggcttttattcccttgTGAGATGGCCTTGGGCTGGCCATCACCCTT--------GACAGATCGTTTCAAGGT----GGGTGGCT
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47156277 124 +  51301725 GTCCATAGAAATCCCTGGCTGGAGTCCGACAAAGTCAGG--AGAGGGAGGGCAGGGCTTTTATTCCCTTGTGAGATGGCCTCGGGCTGGCCATCACCCTT--------GACAGATCGTTTCAAGGT----GGGTGGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46860924 124 +  50890351 GTCCATAGAAATCCCTGGCTGGAGTCGGACAAAGTCAGG--AGAGGGAGGGCAGGGCTTTTATTCCCTTGTGAGATGGCCTTGGGCTGGCCATCACCCTT--------GATAGATCATTTCAAGGT----GGGTGGCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443752 123 +  49145316 GCCAACAGAAAGCCCTGGCTGGAGATGCATGAAGACAGG--AGGGGGCAG-CAGGGCTTTTACTCCCCAGTGAGATGGGCTTGGGCTGGCCGTCGCCCTT--------GATAGATCATTTCAAGGT----GGGTGGCT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19647733 133 - 122678785 GCCCATAGAAAGCCCAGGGTGGA----GA-GGGGGCAGGCAGGATTGAGCACTGGGCTCTTCTTCCCTTGTAAGATCCCCAGGGCCTGGCTGTGCCCCTTCACTGATGGACGGACCGTGTCAAGATGGAGGGAGGGCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e macFas5.chr19              55048529 6096 +  59248254 I

a score=38426.000000
s hg38.chr19_GL949751v2_alt    159586 21 +   1002683 CTACACACCCTTTAAAAAAAA
s panTro4.chr19              59092294 21 +  63644993 GTACACACCCTTTAAAAAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969658 21 +  60714840 CTACACACCCTTTAAAAAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739175 21 - 106955855 CTATACACCCTTTAAAATAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029382 21 +  64156825 CTACTCACCCTTTAAAAAAAA
i rheMac3.chr19             C 0 I 1
s papAnu2.chr19              47156401 21 +  51301725 Ctactcatcctttaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861048 21 +  50890351 CTACTCACCCTTTAAAAAAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443875 20 +  49145316 CTACATACTCATAAAAAAAA-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866  0 - 122678785 C
e macFas5.chr19              55048529 6096 +  59248254 I

a score=7644.000000
s hg38.chr19_GL949751v2_alt    159607 4 +   1002683 TAAT
s panTro4.chr19              59092315 4 +  63644993 TAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969679 4 +  60714840 TAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739196 4 - 106955855 TAAT
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47156422 4 +  51301725 taat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861069 4 +  50890351 TAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443895 4 +  49145316 TAAT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866 0 - 122678785 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60029403 1 +  64156825 I

a score=136136.000000
s hg38.chr19_GL949751v2_alt    159611 112 +   1002683 TTTggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggttgggagttcgagatcagcctgaccaacatggaaaaacc
s panTro4.chr19              59092319 112 +  63644993 TTTggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacctgaggtcgggagttcgagatcagcctgaccaacgtggagaaacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969683 112 +  60714840 TTTggccaggcgtggtggctcatgcctgtaatctcagcactttgggaggccgaggcaggcggatcacctgaggtcaggagttcgagattagcctgaccaacatggagaaacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739200 112 - 106955855 TTTggccaggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggttgggagttcgagatcagcctgaccaatatggagaaacc
i nomLeu3.chr10             C 0 M 136
s papAnu2.chr19              47156426 111 +  51301725 gttggcc-ggtgtggtggctcgcgccggtaatcccagcactttgggaggctgaggtgggcggatcacctgaggtcaggagtttgagaccagcctgaccaacaaggagacatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861073 112 +  50890351 GTTggctgggtgtggtggctcgcgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcgggagtttgagaccagcctgaccaacaaggagaaacc
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866   0 - 122678785 C
e calJac3.chr22              45443899   0 +  49145316 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60029403   1 +  64156825 I

a score=24086.000000
s hg38.chr19_GL949751v2_alt    159723 28 +   1002683 ctgtctctactaaaaatacaaaaaatta
s panTro4.chr19              59092431 28 +  63644993 ccgtctctactaaaaatacaaaaaatta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969795 28 +  60714840 ccgtctctactaaaaatacaaaaaatta
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47156537 28 +  51301725 ccgtctctactaaaaatacgaaaaatta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861185 28 +  50890351 ccgtctctactaaaaatataaaaagtta
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866  0 - 122678785 C
e calJac3.chr22              45443899  0 +  49145316 C
e nomLeu3.chr10             102739312 136 - 106955855 M
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60029403  1 +  64156825 I

a score=191685.000000
s hg38.chr19_GL949751v2_alt    159751 169 +   1002683 gccgggcatggtggtgagtgcctgtaattccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcggtaagccaagatcgtaccattgcactccagcctgggcaacaggagtgaaactccgtctcaaaaaaaaaaaaaaaaaaaa--------------------------------aa
s panTro4.chr19              59092459 167 +  63644993 gccgggcatggtggtgcgtgcctgtaattccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcggtaagccaagatcgtaccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaaaaaaaa----------------------------------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969823 166 +  60714840 gccaggcatggtggtgcatgcctgtaattccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtaagccaagatcctaccgttgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaaaaaaa-----------------------------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739448 170 - 106955855 gccgggcatggtggtgcatgcctgtaattccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggctgaggttgcggtgagccaagatcgtaccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaaaaaaaa-------------------------------aaa
i nomLeu3.chr10             M 136 C 0
s papAnu2.chr19              47156565 201 +  51301725 gccgggcatggtggtgcatgcctgtaattccagctacccgggaagccagggcaggagaattgcttgaacccaggaggcggaggttgtggtgagccaagatcgtgctattacactccagcctgggcaacaagagcgaaactccgtctcaaaaaaaaaaataaataaataaataaataaaataaaataaaaaaaatatatata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861213 161 +  50890351 gccgggcatggtgatgcatgcctgtaattccagctactcgggaagccgaggcaggagaattgcttgaacccgggaggcgggtgttgtggtgagccaagatcgtgctattgtactccagcctgggcaacaagagcaaaactccgtctcaaaaaaa----------------------------------------aTATATA
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866   0 - 122678785 C
e calJac3.chr22              45443899   0 +  49145316 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60029403   1 +  64156825 I

a score=7527.000000
s hg38.chr19_GL949751v2_alt    159920 5 +   1002683 TTTAG
s panTro4.chr19              59092626 5 +  63644993 TTTAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969989 5 +  60714840 TTTAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739618 5 - 106955855 TTTAG
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47156766 5 +  51301725 tatag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861374 5 +  50890351 TGTAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443899 5 +  49145316 TTTAG
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866 0 - 122678785 C
e macFas5.chr19              55048529 6096 +  59248254 I
e rheMac3.chr19              60029403 1 +  64156825 I

a score=566530.000000
s hg38.chr19_GL949751v2_alt    159925 280 +   1002683 ggccaggt-----gtgacggctcacacctataacactagcactttggttggcctaggcaggcagatcacttgatgtcaggggtttgagaccagcccggccaacatggtgaaaccccatctctact--aaaaatat---aaaaattagcaaggcgtggtggtgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatcgctcgaacccgagaggcagaggttgcagtg-----agatcacaccactgcactccagcctgggcaacagagcgagactccatctttaa
s panTro4.chr19              59092631 280 +  63644993 ggccaggt-----gtgacggctcacacctataacactagcactttggttggcctaggcaggcagatcacttgatgtcaggggtttgagaccagcccggccaacatggtgaaaccccatctctact--aaaaatat---aaaaattagcaaggcgtggtggtgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatcgctcgaacccgagaggcagaggttgcagtg-----agatcacaccactgcactccagcctgggcaacagagcgagactccatctttaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55969994 280 +  60714840 ggccgggt-----gtgacggctcacacctgtaatactagcactttggttggcctaggcaggcagatcacttgatgtcaagggtttgagaccagcccggccaacatggtgaaaccccatctctact--aaaaatat---aaaaattagccaggcgtggtggtgggtgcctgtaatcccagctactcgagaggctgaggcaggagaatcgctggaacctgggaggcagaggttgcagtg-----agatcacaccactgcactccagcctgggcaacagagcgagactccgtcCTTAA
i ponAbe2.chr19             C 0 M 120
s nomLeu3.chr10             102739623 275 - 106955855 ggccgggt-----atgacggcccacacctgtaatactagcactttggttggcctaggcaggcagatcaattgatgtcaggggtttgagaccagcccggccaacatggtgaaaccccatctgtact--aaaaatat---aaaaattagcca-----ggtggtgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatcgctggaacctgggaggcagaggttgcagtg-----agatcacaccactgcactccagcctgggcaacagagcaagactctgtctttaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55054625 286 +  59248254 ggccaggc-----gtggtggctcacgcccgtaatcccagcactttgggaggctgaggtgggtggatcac--gaggtcaggagatcgagaccatcctggccaacacggtgaaaccccgtttctacttaaaaaaaattcaaaaaattagccaggcgtggtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagatcgcaccactgcactccagcctgggtgacagagcgagattctgtctt--a
i macFas5.chr19             I 6096 C 0
s papAnu2.chr19              47156771 285 +  51301725 ggccTGGCATgatgtgatggttcatgcctgtaatcccaggactttggttggcctaggtgggcagatcacttgatgtcaggggtttgagaccagcccggccaagatggtgaaaccccgtctctact--aaaaatat---aaaaattagccaggtatggtggtgggcacctatagtcccagctactcgagaggctgaggtgggagaatcgctggaacctgggaggcagaggttgcagtg-----acatcacaccactgcactccagcctgggtgacagagcgagattctgtcttaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861379 285 +  50890351 GGCCTGGTGTGATATggtggctcacgcctgtaatcccagcactttggttggtctaggtgggcagatcacttgatgtcaggggtttgagaccagcccggccaagatggtgaaaccccgtctctact--aaaaatat---aaaaattagccaggtgtggtggtgggcacctgtagtcccagctactcgagaggctgaggtgggagaatcgctggaacctgggaggcagaggttgcagtg-----acatcacaccactgcactccagcctgggtgacagagcgagattctgtcttaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45443904 253 +  49145316 ggccaggt-----gtggtggctcatgcttgcaatcccagcactttgggaggccaaggcaggtggatcacttgatgtcaggggtttgagaccagcctgggcaacatggtgaaacctcatctctact--aaaaatat---aaaaattagccggacatggtggtgggcacctgtaatctcagctactc--------------------------------gggaggcagaggttgcagtgagcagagattgcacaactgcactccagcctgggtgacagagcaagactccatctcaga
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866   0 - 122678785 C
e rheMac3.chr19              60029403   1 +  64156825 I

a score=5603.000000
s hg38.chr19_GL949751v2_alt    160205 21 +   1002683 aaataaataacatttaaaaaa
s panTro4.chr19              59092911 21 +  63644993 aaataaataaaatttaaaaaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102739898 20 - 106955855 aaataaataaaa-taaaaaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55054911  9 +  59248254 aaaaaaaaa------------
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47157056  9 +  51301725 aaaaaaaaa------------
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46861664 21 +  50890351 aaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr6              C 0 I 127
s calJac3.chr22              45444157 20 +  49145316 -aaaaaataaaataataaTAG
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866  0 - 122678785 C
e ponAbe2.chr19              55970274 120 +  60714840 M
e rheMac3.chr19              60029403  1 +  64156825 I

a score=-754.000000
s hg38.chr19_GL949751v2_alt    160226 4 +   1002683 TTAa-
s panTro4.chr19              59092932 4 +  63644993 TTAa-
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102739918 4 - 106955855 TTAa-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55054921 3 +  59248254 tta--
i macFas5.chr19             I 1 I 3
s papAnu2.chr19              47157066 3 +  51301725 tta--
i papAnu2.chr19             I 1 I 2
s calJac3.chr22              45444177 4 +  49145316 -TAAT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866 0 - 122678785 C
e ponAbe2.chr19              55970274 120 +  60714840 M
e chlSab2.chr6               46861685 127 +  50890351 I
e rheMac3.chr19              60029403 1 +  64156825 I

a score=23499.000000
s hg38.chr19_GL949751v2_alt    160230 12 +   1002683 ttttttgtagag
s panTro4.chr19              59092936 12 +  63644993 ttttttgtagag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102739922 12 - 106955855 ttttttgtagag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55054927 12 +  59248254 ttttttgtagag
i macFas5.chr19             I 3 C 0
s papAnu2.chr19              47157071 12 +  51301725 ttttttgtagag
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               46861812 12 +  50890351 ttttttgtagag
i chlSab2.chr6              I 127 C 0
s calJac3.chr22              45444181 12 +  49145316 ttttttgtagag
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866  0 - 122678785 C
e ponAbe2.chr19              55970274 120 +  60714840 M
e rheMac3.chr19              60029403  1 +  64156825 I

a score=71096.000000
s hg38.chr19_GL949751v2_alt    160242 32 +   1002683 acagggtctcactatattgcccaggctggtct
s panTro4.chr19              59092948 32 +  63644993 acagggtctcactgtattgcccaggctggtct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970394 32 +  60714840 acagggtctcactatattgcccaggctggcct
i ponAbe2.chr19             M 120 C 0
s nomLeu3.chr10             102739934 32 - 106955855 acagggtctcactatattgcccaggctggtct
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55054939 32 +  59248254 acagagtctcactatattgcccaggctggtct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47157083 30 +  51301725 ac--agtctcactatattgcccaggctggtct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861824 32 +  50890351 acagagtctaacgagattgcccaggctggtat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45444193 32 +  49145316 acagggtctcactatattgcccaggctggcct
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866  0 - 122678785 C
e rheMac3.chr19              60029403  1 +  64156825 I

a score=246399.000000
s hg38.chr19_GL949751v2_alt    160274 82 +   1002683 taaactcctggcctccagcagtcctcccactatgacctcccaaagcgctgggattatacaagtatgagccactgcaccaggc
s panTro4.chr19              59092980 82 +  63644993 taaactcctggcctccagcagtcctcccactatgacctcccaaagcgctgggattttacaagtatgagccactgcaccaggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970426 82 +  60714840 taaactcctggcctccagcaatcctcccactatggcctcccaaagcgctgggattatacaagtatgagccactgcaccaggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102739966 82 - 106955855 taacctcctggcctccagcaatcctcccactgtgacctcccaaagcgctgggattatacaagtatgagccactgcaccagac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029404 82 +  64156825 TAAActcctggcctccagcaatcctcccgctatgacctcccaaagcgctgggattatacaagtatgagtcactgcaccaggc
i rheMac3.chr19             I 1 C 0
s macFas5.chr19              55054971 82 +  59248254 taaactcctggcctccagcaatcctcccgctatgacctcccaaagcgctgggattatacaagtatgagtcactgcaccaggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47157113 82 +  51301725 taaactcatggccgccagcaatcctcccgctatgacctcccaaagcgctgggattatacaagtgtgagtcactgcaccaggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861856 82 +  50890351 taaactccaggcctccagcaagcctcccactatgacctcccaaagcgctgggattatacaagtatgagtcactgcaccaggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45444225 79 +  49145316 taaactcctggcctccagcaatcctcccaccatggcctcccaaagcactgggatta---gattatgaggcactgcgccAAGT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19647866  0 - 122678785 C

a score=280280.000000
s hg38.chr19_GL949751v2_alt    160356 94 +   1002683 cTACACAACCCTTTTTCCATCCAGGTACCACAACCTGACCCATTTCCCCTGGGCCTAGGGTTGGGAACGGCTCCTTCTGCGGGGCTGGGGTTCA
s panTro4.chr19              59093062 94 +  63644993 cTACACAACCCTTTTTCCATCCAGGTACCACAACCTGACCCATTTCCCCTGGGCCTAGGGTTGGGAACGGCTCCTTCTGCCGGGCTGGGGTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970508 94 +  60714840 cTACACAACCCTTTTTCCATCCAGGTACCACAGCCTGACCCATTTCCTCTGGGCCTAGGGTTGGGAAGGGCTCCTTCTGCCGGTCTGGGGTTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740048 94 - 106955855 cTAAACAACCCTTTTTCCATCCAGGTACGACAACCTGACCCATTTCCCCTGGGCCTAGGGTTGGGATCGGCTCCTTCTGCCCGTCTGGCGTTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029486 94 +  64156825 cTACACAACCCTTTTTCCATCAAGGTACCACAACCTGAGCCACTTCCCCTGGGCCATGAGTTGGGAACGGCTCCTGCTGCTGGTCTGGGGTTCA
i rheMac3.chr19             C 0 I 298
s macFas5.chr19              55055053 94 +  59248254 cTACACAACCCTTTTTCCATCAAGGTACCACAACCTGAGCCACTTCCCCTGGGCCATGAGTTGGGAACGGCTCCTGCTGCTGGTCTGGGGTTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47157195 94 +  51301725 ctacACAACCCTTTTTCCATCAAGGTACCACAACCTGAGCCACTTCCCCTGGGCTGTGAGTTGGGAACGGCTCTTGCTGCTGGTCTGGGGTTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46861938 94 +  50890351 cTAGACAACCCTTTTTCCATCAAGGTACCACAACCTGACCCACCTCCCCTGGGCCTTGAGTTGGGAAGGGCTCCTGCTGCTGGTCTGGGGTTCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45444304 91 +  49145316 CTACACAACCCTTTCTCCACCCAGGT---ACAACCTGCCCCACTTCCCCTGGGCCTAGGGTTGGGAAGGGCTCCTGCCGCAGGTCTGGGGTTCA
i calJac3.chr22             C 0 I 4
s canFam3.chr1               19647866 81 - 122678785 CTGCACAA--TGTCTTCCCTTCAGGTTGCACTACCTGGCCCTCTTCTC---GGCCCTGGGCT--------CCCCAGCTGCTGGTCCAGGATTCC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I

a score=40679.000000
s hg38.chr19_GL949751v2_alt    160450 13 +   1002683 GGCAC----CATCCCTT
s panTro4.chr19              59093156 13 +  63644993 GGCAC----CATCCCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970602 13 +  60714840 GGCAC----CATCCCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740142 13 - 106955855 GGCAC----CATCCCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029878 13 +  64156825 GGCAC----CACCCCTT
i rheMac3.chr19             I 298 C 0
s macFas5.chr19              55055147 13 +  59248254 GGCAC----CACCCCtt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47157289 13 +  51301725 GGCac----cacccctt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46862032 13 +  50890351 GGCAC----CACCCCtt
i chlSab2.chr6              C 0 I 565
s calJac3.chr22              45444399 17 +  49145316 GGCACTTCTTGTCCCTT
i calJac3.chr22             I 4 C 0
s canFam3.chr1               19647947 12 - 122678785 -TCAC----TGTCCCCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I

a score=837.000000
s hg38.chr19_GL949751v2_alt    160463 3 +   1002683 CTT-
s panTro4.chr19              59093169 3 +  63644993 CTT-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970615 3 +  60714840 CCT-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740155 3 - 106955855 CTT-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029891 2 +  64156825 -TT-
i rheMac3.chr19             C 0 I 1
s macFas5.chr19              55055160 2 +  59248254 -tt-
i macFas5.chr19             C 0 I 304
s papAnu2.chr19              47157302 2 +  51301725 -tt-
i papAnu2.chr19             C 0 I 302
s calJac3.chr22              45444416 3 +  49145316 CTC-
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19647959 3 - 122678785 -CTG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e chlSab2.chr6               46862045 565 +  50890351 I

a score=453905.000000
s hg38.chr19_GL949751v2_alt    160466 204 +   1002683 GCTCTTCTACATCCTGCCCAATTGGTGGC-------CACTCCTTCAGTCATCCTAAATGC-GCGTTTCCTGCTGCAACTCA--GACCTACccacagccagccaacggcctgtatcaagcca-ccacagtttgtcacctggactc--------------------------------------ggacaaaggaggatccctttatctgagtccatcccatcttgccctgttccacttcaattctccttcagcat
s panTro4.chr19              59093172 204 +  63644993 GCTCCTCTACATCCTGCCCAATTGGTGGC-------CACTCCTTCAGTCATCCTAAATGC-GCGTTTCCTGCTGCAACTCA--GACCTACCCACAGCCAGCCAACGGCCTGTATCAAGCCA-CCACAGTTTGTCACCTGGACTC--------------------------------------GGACAAAGGAGGATCCCTTTATCTGAGTCCATCCCATCTTGCCCTGTTCCACTTCAATTCTCCTTCAGCAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970618 204 +  60714840 GCTCCTCTACATCCAGCCCACATGGTGGC-------CACTCCTTCAATCATCCTAAATGT-GCGTTTCCTGCTGCAGCTGA--GACCTACccacagccagccaacagcctgcatcaagcca-ccacagtttgtcacctggactc--------------------------------------ggataaaggaggatccctttatctaagtccatcccatcttgccctgttccacttcaattctccttcagcat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740158 204 - 106955855 GCTCCTCTACACCCTGCCCACATGGTGGC-------CGCCCCTTCAATCATCCTAAATGC-ACATTTCCTGCTGCAACTCA--GACCTACCCACAGCCAGCCGACAGCCTGCATCAAGCCA-CCACAGTTTGTCACCTGGACTT--------------------------------------GGATAAAGGAGGATCCCTTTATCTAAGTCCATCCCATCTTGCCCTGTTCCACTTCAATTCTCCTTCAACAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60029894 238 +  64156825 GCTCTTCTACATCCTGCCCACACGGTGGC-------CACTCCTTCAATCATCCTAAATGT-GCATTTCCGGCTGCAGCTCA--GACCTACCCA----CAGCCGACAGCCTGTATCAAGGCA-CCACAGTCAGTCACCTGGACTTGGATAAAGGGATCCTTTTTATTTGGATCTCTTTATATAGGATAAAGGAGGATCCCTTTATCCGAGTCCATTCCATCTTGCCCTGTTCCACTTCAATTCTCCCTCAGCAT
i rheMac3.chr19             I 1 C 0
s macFas5.chr19              55055466 238 +  59248254 GCTCTTCTACATCCTGCCCACACGGTGGC-------CACTCCTTCCATCATCCTAAATGC-GCATTTCCGGCTGCAGCTCA--GACCTACCCA----CAGCCGACAGCCTGTATCAAGGCA-CCACAGTCTGTCACCTGGACTTGGATAAAGGGATCCTTTTTATTTGGATCTCTTTATATAGGATAAAGGAGGATCCCTTTATCCGAGTCCATTCCATCTTGCCCTGTTCCACTTCAATTCTCCCTCAGCAT
i macFas5.chr19             I 304 C 0
s papAnu2.chr19              47157606 239 +  51301725 GCTCCTCTACATCCTGCCCACACGGTGGC-------CACTCCTTCAATCATCCTAAATGC-GCATTTCCTGCTGCAGCTCA--AACCTACCCA----CAGCCGACAGCCTGTATCAAGGCACCCACAGTCTGTCACCTGGACTTGGATAAAGGGATCCTTTTTATTTGGATCCCTTTATATAGGATAAAGGAGGATCCCTTTATCCAAGTCCATTCCATCTTGCCCTGTTCCACTTCAATTCTCCTTCAGCAT
i papAnu2.chr19             I 302 C 0
s calJac3.chr22              45444419 200 +  49145316 GCTCCTCTACATCCTGCCCACAC-ACGGC-------CACTACTCTGACCATCCTAAATGCGGGGTTTCCTGCTGCAACTCCCTGCCCTACCCA----TAGCCAACAGCCTGCACCAAGCCG-T--CAGTTTGTCACCTGGACTC--------------------------------------AGATAAAGGGACCCTCCTTTATCCCAGTCCATCCCATCTTGCCCTGATCCACTTCAATTCTCCTCCAGCAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19647962 176 - 122678785 GCTCTTCTACATCCTGCCCCCACTGCTGTAAAGAAGAACTCCTCAAAGTGTCCCAAATGCAGCATTTCCTGCTGGAGCTCT--GA-----------------------CTGTATCAAGCTG-CCACTGCCAGTCAGCAGGACTT--------------------------------------TGATCAAGGAGACCATCCT----------CATCCCTTCTTGCCCT-TTCTGTGACAATTCT--GTCAGTAT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e chlSab2.chr6               46862045 565 +  50890351 I

a score=95441.000000
s hg38.chr19_GL949751v2_alt    160670 67 +   1002683 ccagaacgagttttctttcttttcttttctttttttttt-gagatggaatcttgcccgggaaggccca
s panTro4.chr19              59093376 68 +  63644993 CCAGAACGAGTTTTAtttcttttcttttctttttttttttgagatggaatcttgcccgggaaggccca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970822 67 +  60714840 ccagaaccagtttttgttcttcttttttttttttttttt-gagatggaatcttgcccgggaaggccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740362 61 - 106955855 CCAGAACGAGttttcttt------tcctttttttttttt-gagatggaatcttgcctgggaagtccca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030132 60 +  64156825 CCAGAACGAGTA-------tttttttatttctatttttt-gagacggagtctcgcccggggaggccca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55055704 60 +  59248254 CCAGAACGAGTA-------tttttttatttctatttttt-gagacggagtctcgcccggggaggccca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47157845 63 +  51301725 TCagaacaagtatt--ttttttttttttttttttttttt-gagacggagtctcgctctgt--ggccca
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45444619 60 +  49145316 CCAGAAT-AGTGT------TTTTTTTTTTCTTTTTTTTT-GAGATGGCATCTCACCTGGGGAGGCCCA
i calJac3.chr22             C 0 M 576
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19648138  0 - 122678785 C
e chlSab2.chr6               46862045 565 +  50890351 I

a score=428579.000000
s hg38.chr19_GL949751v2_alt    160737 280 +   1002683 ggctggagtgcaatggcgggatcttggctcactgcaacctccaccttccaggttcaagcaattatcctgcctcagcctcctgagtagctgggattacaggtgtgagccaccacacccggctcatttttg-tatttttagtagagacggagttttaccatgttggccaggatggtctcaaactcctaacctcaggtgatctacccgcgtcagcctcccaaagtgctgggattacaggcgtgagccaccgcagctggcctagaatgagtatttctattt--gttt
s panTro4.chr19              59093444 276 +  63644993 ggctggagtgcaatggcgggatcttggctcactgcaacctccaccttccaggttcaagcaattatcctgcctcagcctcctgagtagctgggattacaggtgtgagccaccacacccggctcatttttg-tatttttagtagagatggagttttaccatgttggccaggatggtctcaaactcttgacctcaggtgatctacccgcgtcagcctcccaaagtgctgggattacaggcgtgagccaccgcagctggccTAGAACGAGTAtttctattt------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55970889 279 +  60714840 ggctggagtgcaatggtaggatcttggctcactgcaacctccaccttccaggttcaagcaattctcctgcctcagcctcc-gagtagctgggattacaggcatgcgctaccacacccggctcatttttg-tatttttagtacagacggggttttaccacgttggccaggatggtctcaaactcctgacctcaggtgatctacccacgtcagcctcccaaagttctgggattacaggcgtgagccaccgcagctggcctagaacgagtatttctatgt--gttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740423 280 - 106955855 ggctggagtgcaatagcgggatcttggctcactgcaacctctaccttccaggttcaagcaattctcctacctcagcctcctgagtagctgggattacaggtgtgagccaccacacctggctcatttttg-tatttttagtagagacagggttttaccatgttggccaggatggtctcaaactcctgacctcaggtgatctactcgcattagcctcccaaagtgctgggattacaggtgtgagccaccgcagctggccTAGAACGAGTAtttctattt--attt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030192 275 +  64156825 ggctggagtgcgatggtgggatcttggctcactgcaacctccaccttccaggttcaagcaattctcctgcctcaacctcccaagtagctgggattacaggtgtgagccaccac-tctggctcatttttt-tatttttagtagagatggagttttaccatgtcggccagactggtctcaaactcctgacctcaggtaatccacccgcatcagcctcccaaagtgttgtgattaaaggcgtgagccaccgcacctggccTAGAACGAGTAtttctattt------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55055764 275 +  59248254 ggctggagtgcgatggtgggatcttggctcactgcaacctccaccttccaggttcaagcaattctcctgcctcaacctcccaagtagctgggattacaggtgtgagccaccac-actggctcatttttt-tatttttagtagagatggagttttaccatgttggccagactggtctcaaactcctgacctcaggtaatccacccgcatcagcctcccaaagtgttgtgattaaaggcgtgagccaccgcacctggccTAGAACGAGTAtttctattt------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47157908 258 +  51301725 ggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcccgccagtctcctgcctcagcctcccgagtagctgggactacaggcgcccacaaccgcgcccggctaattttttgtatttttagtagagacgaggtttcaccg------------tggtctcgatctcctgacctt--gtgatccgcccacctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccta-------tttttttattttt----
i papAnu2.chr19             C 0 I 176
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19648138   0 - 122678785 C
e calJac3.chr22              45444679 576 +  49145316 M
e chlSab2.chr6               46862045 565 +  50890351 I

a score=57530.000000
s hg38.chr19_GL949751v2_alt    161017 32 +   1002683 atttatttttgagatggagttttgctcttgtt
s panTro4.chr19              59093720 32 +  63644993 atttatttttgagatggagttttgctcttgtt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55971168 32 +  60714840 atttatttttgagacggagttttgctcttgtt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740703 32 - 106955855 atttatttttgagacggagttttgctcttgtt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030467 32 +  64156825 atttatttttgagacggagtttcactcttgtc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55056039 32 +  59248254 atttatttttgagacggagtttcactcttgtc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47158342 32 +  51301725 atttatttttgagacggagtttcgctcttgtc
i papAnu2.chr19             I 176 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19648138  0 - 122678785 C
e calJac3.chr22              45444679 576 +  49145316 M
e chlSab2.chr6               46862045 565 +  50890351 I

a score=149642.000000
s hg38.chr19_GL949751v2_alt    161049 66 +   1002683 gcccaggctggagtgcaatggtacgatctcagctcaccacaacctccgcctcctgggttcaagcaa
s panTro4.chr19              59093752 66 +  63644993 gcccaggctggagtgcaatggtacgatctcagctcaccacaacctccgcctcctgggttcaagcaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55971200 66 +  60714840 gcccaggttggagtgcaatggtacgatctcagctcaccacaacctccgcctcctgggttcaagcaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740735 66 - 106955855 gcccaggctggagtgcaatggtacgatctcagctcaccaaaacctctgcatcctgggttcaagcaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030499 66 +  64156825 acccaggctggagtgcaatggcgcgatgtcagctcaccacaacctctgcctcctgggttcaagcaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55056071 66 +  59248254 acccaggctggagtgcactggcgcgatctcagctcaccacaacctctgcctcctgggttcaagcaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47158374 66 +  51301725 acccgggctggagtgtagtggcgcgatctcagctcaccacaacctctgcctcctgggttcaagcaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46862610 66 +  50890351 gcccaggctggattgcgatggtgggatcttggctcactgcaacctccaccttccaggttcaagcaa
i chlSab2.chr6              I 565 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19648138  0 - 122678785 C
e calJac3.chr22              45444679 576 +  49145316 M

a score=562965.000000
s hg38.chr19_GL949751v2_alt    161115 194 +   1002683 ttctcctgcctcagcctcccgagtagctgggattacaggtatgtgccaccacgcccagctaatcttttgtatttttagtagagacagggtttctccattttggtcaggctggtcttgaactcccgacctcaggtgatccgcctgcctcagcctcccaaagtgctggca-ttacaggcgtgagctactgtgcccag-
s panTro4.chr19              59093818 194 +  63644993 ttctcctgcctcagcctcccgagtagctgggattacaggtatgcaccaccacgcccagctaatcttttgtatttttagtagagacagggtttctccattttggtcaggctggtcttgaactcccggcctcaggtgatccgcctgcctcagcctcccaaagtgctggga-ttacaggcgtgagctactgtgcccag-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55971266 194 +  60714840 ttctcctgcctcagcttcctgagtagctgggattacgggcatgcgccaccatgcccagctaattttttgtatttttagtagagacagggtttctccattttggtcaggctggtctcgaactcccgacctcaggtgatccgcctgcctcagcctcccaaagtgctggga-ttacaggcgtgagctaccgtgcccag-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740801 194 - 106955855 ttctcctgcctcggcttcccaagtagctgggattacaggcatgcgccaccacgcccagctaattttttgtatttttagtagagacaaggtttctccattttggtcaagttggtctcgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctggga-ttacaggcgtgagctactgtgcccag-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030565 194 +  64156825 ttctcctgcctcagcttcccgagtagctgggattacaggcgtgcgccaccacgctcagctaattttttgtatttttagtagagacagggtttctccattttggtcaggctggtctcaaactccccacctcaggtgatccgcctgcctcagcctcccaaagtgctggga-ttacaggcgtgagccaccgcgcccgg-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55056137 194 +  59248254 ttctcctgcctcagcttcccgagtagctgggattacaggcgtgcgccaccacgcccggctaattttttgtatttttagtagagacagggtttctccattttggtcaggctggtctcaaactccccacctcaggtgatccgcctgcctcagcctcccaaagtgctggga-ttacaggcgtgagccaccgcgcccgg-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47158440 194 +  51301725 ttctcctgcctcagcttcccgagtagctgggattacaggcgtgcaccaccacacgcagctaattttttgtattttcagtagagacagggtttctccattttgatcaggctggtctcaaactcccgacctcaggtgatccgcctgcctcagcctcccaaagtgctggga-ttacaggcgtgagccaccgcgcccgg-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46862676 192 +  50890351 ttctcctgcctcaacctcccaagtagctgggattacaggtgtgagccaccacact-ggctca-tttttgtatttttagtagagacagagttttaccatgttagccagactggtctcaaactccccacctcaggtgatccgcctgcctcagcctcccaaagtgttggga-ttacaggcatgagccaccgcgcccgg-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45445255 193 +  49145316 ttctcctgcctcagccttcccagtagctgggattacaggtatg--ccaccacacctggctca-tttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgactgcaggtgatccacctgcctcagcctcccaaagtgctgggatttacaggcgtgagcctctgcacccggc
i calJac3.chr22             M 576 C 0
e mm10.chr7                   3688744 1564 + 145441459 I
e canFam3.chr1               19648138   0 - 122678785 C

a score=460246.000000
s hg38.chr19_GL949751v2_alt    161309 149 +   1002683 ccagaacgagtatttttaaacatttaaaactggtcacattgcctcttctggcagcaaaccaaaaatcccctcttccagcagatctcaatcctccacgggaagaagtccaatgtcctcacggtctccagccaggcctagcacggtgtcag
s panTro4.chr19              59094012 149 +  63644993 ccAGAACGAGTATTTTTAAACATTTAAAACTGGTCACATTGCCTCTTCTGGCAGCAAACCAAAAATCCCCTCTTCCAGCAGATCTCAATCCTCCACGGGAAGAAGTCCAGTGTCCTCAAGGTCTCCAGCCAGGCCTAGCACGGTGTCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55971460 149 +  60714840 ccagaacgagtatttttaaacatttaaaactggtcacattgcctcttctggcagcaaaccaaaaatcccctcttacagcagatctccgtcctccacaggaagaagtccaatgtcctcacggtctccagccaggcctagcatggtgtcag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102740995 149 - 106955855 ccAGAACGAGTATTTTTAAACATTTAAAACTGGTCACATTGCCTCTTCTGGCAGCAAACCAAAAATCCCCTCTTCCAGCAGATCTCAGTCCTCCACGGGAAGAAGTCCAACGTCCTCACGGTCTCCAGCCAGGCCTAGCACGGTGTCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030759 146 +  64156825 ccagaacaagtatttttaaacatttaaaactggtcacattgcctcttctggcagcaaaccaatgatcccctcttccagcagatctccgtcctccgtgg---gaagtccaaagtcctcacggtcgccagccagacctagcatggtgtcag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55056331 146 +  59248254 ccAGAACAAGTATTTTTAAACATTTAAAACTGGTCACATTGCCTCTTCTGGCAGCAAACCAATGATCCCCTCTTCCAGCAGATCTCCGTCCTCCGTGG---GAAGTCCAACGTCCTCACGGTCGCCAGCCAGACCTAGCATGGTGTCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47158634 149 +  51301725 ccagaacaagtatttttaaacatttaaaactggTCACATTGCCTCTTCTGGCAGCAAACCAAAGATCCTCTCTTCCAGCACATCTCCGTCCTCCGTGGGAAGAAGTCCAAAGTCCTCACGGTCGCCAGCCAGACCTAGCATGGTGTCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46862868 149 +  50890351 ccAGAACAAGTATTTTTAAACATTTAAAACTGGTCACATTGCCTCTTCTGGCAGCAAACCAAAGATCCCCTCTTCCAGCAGATCTCAGTCTTCCATGGGAAGAAGTCCAAAGTCCTCACGGTCACCAGCCAGACCTAGCATGCTGTCAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45445448 148 +  49145316 cCAGAACAAGTATTTTTAAACATCTAAAACTGGTCACATCTCATCATTTGGCAGCAAACCAAAAATCACCTC-CCCAGCAGCGCTCAGTCCTCCATGGGAAGAAGTCCAGAGTCCTCATGGTTGCTGGCCAGGCCTAGCACGGTCTCAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19648138 111 - 122678785 CCAGAGCA--TATTTCCAAACACATAAACCTGGTCCCATTACCTCTTCTGGCAACAAACCAAAAGACCACTC--CCAGTGGCTCCTGGGCCCC----ATAAGAAGCCCAAAGCCCACAC------------------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3688744 1564 + 145441459 I

a score=929820.000000
s hg38.chr19_GL949751v2_alt    161458 298 +   1002683 ccctgctgcctGTTCCCTTTTGCTCGTCC--------------CAGAAA----GTGGATGTGGCTGGTGTA--GCCTGTGGAACCCAGCCTGCTCCCCTCCACACA-------TCCTGCG-GCCTGAAATGCTCCTCCACGAACCCCTCTCTCATCCAACCTACTCCTGCC-ACCACTGAGCT--CCCACAGGGCACACTGAATGCTGGGAAGGC--CA--CTCCCTACCTAGCATGACTGCTGTGTTCACGGATAAGCCGC--------------CAG-----------TAGGAAACCAtgactctgtgggtctggggtgggccctagg----attctgtttttacccctcttcccaggtg
s panTro4.chr19              59094161 298 +  63644993 CCCTGCTGCCCGTTCCCTTTTGCTCGTCC--------------CAGAAA----GTGGATGTGGCTGGTGTA--GCCTGTGGAACCCAGCCTGCTCCCCTCCACACA-------TCCTGCG-GCCTGAAACGCTCCTCCACGAACCCCTCTCTCATCCAACCTACTCCTGCC-ACCACTGAGCT--CCCACAGGGCACACTGAATGCTGGGAAGGC--CA--CTCCCTACCTAGCATGACTGCTGTGTTCACGGATAAGCCGC--------------CAG-----------TAGGAAACCAtgactctgtgggtctggggtgggccctggg----attctgttttcacccctcttcccaggtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55971609 298 +  60714840 ccctgctgcccgttccctttTGCTCGTCC--------------CAGAAA----GCGTATGTGGCTGGTGCA--GCCTGTGGAACCCAGCCTGCTCCCCTCCACACA-------TCCTACA-GCCTGAAATGCTCCTCCACTAACCCCTCTCTCATCCAACCTACTCCTGCC-ACCGCTGAGCT--CCCACGGGGCACACTGAATGCTGGGGAGGC--CA--CTCCCTACCTAGCATGACTGCCGTGTTCACGGATAAGCTGC--------------CAG-----------TAGGAAACCGtgagtctgtgggtctggggtgggccctggg----attctgttttcacccatcttcccaggtg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102741144 300 - 106955855 CCCTGCTGCCCATTCCCTTTTGCTCGTCC--------------CACAAA----GTAGATGTGGCTGGTGCA--GCCTGTGGAACCCAGCCTGCTCCCCTCCACACA-------TCCTACG-GCCTGAAATGCTCCTCCACTAACCCCTCTCTCATCCAACCCACTGCTGCC-ACCGCTGAGCT--CCCACGGGGCACATTGAATGCTGGGAAGGCCACA--CTCCCTACCTAGCATGAGTGCCGTGTTCGCGGATAAGCCGC--------------CAG-----------TAGGaaatcgtgactctgtgggtctggggtgagccctggg----attctgttttcacccaccttcccaggtg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60030905 303 +  64156825 ccctgctgcccattcccttttgctcttcc--------------cAGAAA----GCGGATGTGGCTGGTGCA--GCAGGT-GAACCCATCCTGCTCCCCTCCACACACGT-CATCCCTACG-GCCTGAAATGCTCCTCCTCTAACCCCTCTCTCATCCAACCTACTCCTGCC-ACTGCTGAGCT--CCCGCGGGGCACGCTGAAGGCTGTGGAGGC--CG--CTCCCTACCTAGCATGACCGCTGTGTTCACAGATAAGCCTC--------------CAG-----------TAGgaaactgtgactctgtgggtctggggtgggccctggg----agtctgttttcacccatcttcccaggtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55056477 303 +  59248254 CCCTGCTGCCCATTCCCTTTTGCTCTTCC--------------CAGAAA----GCGGATGTGGCTGGTGCA--GCAGGT-GAACCCATCCTGCTCCCCTCCACACACGT-CATCCCTACG-GCCTGAAATGCTCCTCCTCTAACCCCTCTCTCATCCAACCTACTCCTGCC-ACTGCTGAGCT--CCCGCGGGGCACGCTGAAGGCTGTGGAGGC--CG--CTCCCTACCTAGCATGACCGCTGTGTTCACAGATAAGCCTC--------------CAG-----------TAGGaaactgtgactctgtgggtctggggtgggccctggg----agtctgttttcacccatcttcccaggtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47158783 303 +  51301725 CCCTGCTGCCCATTCCCTTTTGCTCTTCC--------------CAGAAA----GCGCATGTGGCTGGTGCA--GCAGGT-GAACCCATCCTGCTCCCCTCCACACACGT-CATCCCTACG-GCCTGAAATGCTCCTCCTCTAACCCTTCTCTCATCCAACCTACTCCTGCC-ACTGCTGAGCT--CCCGTGGGGCACACTGAAGGCTGTGGAGGC--CG--CTCCCTACCTAGCATGACCGCTGTGTTCACAGATAAACCTC--------------CAG-----------TAGGAAACTGTGACTCTGTGGGTCTGGGGTGGGCCCTGGG----AGTCTGTTTTCACCCATCTTCCCAGGTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46863017 303 +  50890351 CCCTGCTGCCCATTCCCTTTTGCTCTTCC--------------CAGAAA----GCGGATGTGGCTGGTGCA--GCAGGT-GAACCCATCCTGCTCCCCTCCACACACGT-CATCCCTATG-GCCTGAAATGCTCCTCCTCTAACCCCTCTCTCATCCAACCTACTCCTGCC-ACTGCTGAGCT--CCCGCGGGGCACGCTGAAGGCTGTGGAGGC--CG--CTCTCTACCTAGCATGACCGCTGTGTTCACAGATAAGCCTC--------------CAG-----------TAGGAAACTGtgactctgtgggtctggggtgggccctggg----agtctgttttcacccatcttcccgggtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45445596 299 +  49145316 TCCTGCTGCCGGTTCCCTTCTGCTCCTCC--------------TCGAAA----GCTGATGTGGCTGGTGCA--GTCTGCAGAACCCAGCCTGCTCCTCTCCACACA--T-GGTCCCTACG-GCCTGAAATGCTCCTCCTCTAACCC--CTCTCACCCAGCCCACTCCTGCC-ACTGCTAAGCT--CTTGCAGGGAACACTGAATGCTGGGGAGCC--CA--CTGCCTACCTAGCATGACCACTGGGTTCACTGATAAGCCGC--------------CAG-----------GAGGAAACCATGACTCTGTGGGTCT-TGGTGGGCCCTGGG----AGTCTGTATTCACTCGTTTTCCCAGGAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3690308 333 + 145441459 CCCTATGGCCTGGCTTCCGTTGCCCTTTCAACCACGTGTTATTCAGAAAGTGCGTGGACGTGGCAAGCATA--GTTTGCAATGCCCAGCCTGTTCCTATCTACATGTGTAGGTTCGTACACACCCAAAAGGCACTTCTTCCAA-----TGCACAGCTGACCAATCTCTGCCTAATGTTGTGTC--TGCCATAAGAACAAAGATGTCTGGAGAAAC--CA-GTTCTCCACCTGGCTGGAC-----TGTCCATGGCTACGTTGCTGGAGCCTAGAACATAG-----------CAAGAGCTCACGACTGTTGTAGTCTGGGCTAGGCACTGAGGACCACTCACTTCTTGCCC-TTTTCTTAGGTG
i mm10.chr7                 I 1564 I 219
s canFam3.chr1               19648249 313 - 122678785 --CTTGGGCCCATTCCCCTTCCTTCTCCCGA------------TGTACA----CTCGCTATGGCTGGCACACCGTTGATGCAACCCAGCCTGCTcccttccacaccc---tggtcctaca-tcctgaaaggctctccctccaa-----ctctttgctgaccaactcctgcc-tgtccttGCCTTGCCACCCGAGAACCTGGGACGCTGAGGACAC--TGGGTTCACAACCTTGTGTGACTTTCCTGTGCCCTGATATGTTGC--------------TGGAGCCTTGCACATGGGaaatcctgacttt-tcagtctggggtggggcctggg----aatctgctttcactcattctcccaggtg
i canFam3.chr1              C 0 C 0

a score=2637026.000000
s hg38.chr19_GL949751v2_alt    161756 774 +   1002683 atTAGGAGCCAGACCTGGA---TGCCctagtttt---gttccctt-caccaagtaccttctccccagagctggtttttctcctttgcaaaatagctggctac----agagattcaaggacagcatgttggtaaaccacccagctg----ggcctctggcacaccgcaagcacccaatGGCACCTACTGTTACC-TATGTGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTGCCCAAGGGCATGTGAATGGGGAATGCTGTGCCCAGGGCAGCAAGTGAGGTGACGTCCCAC-CCCCAGGGTGTGTTGGAGGTAAAATCCCG--------------------GGGAGCCACT---GAAGGGG-------------GAGGTAAAGT-GGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGTGGCAAGCCCCGAGTCTGACCTTCAGCGTCAGCAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGGAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAAGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGCGCACTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCATTCACTCCACGAGTCCAGCCACCAATCCTCCCCCAGCTCTCCCCATTCGTTTAGAGACAGAAACACAGAAGGGCAGAGAG----GACAGGAGGGTGGATGTAGGGACCGAATGAGTATGATTGAAACAGTGGGAGAAGAGGCTCAGCCACATAGAAACACACACCAACAG---AGAAT-------GA----GGTTAAGAGAAGCTTCAGG
s panTro4.chr19              59094459 777 +  63644993 atTAGGAGCCAGACCTGGA---TGCCctagtttt---gtgccctt-caccaagtaccttctccccagagctggtttttctcctttgcaaaatagctggctac----agagattcaaggacagcatgttggtaaaccacccagctg----ggcctctggcacaccgcaagcacccaatGGCACCTACTGTTACCCTGTGTGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTGCCCAAAGGCATGTGAATGGGGAATGCTGTGCCCAGGGCAGCAAGTGAGGTGACGTCCCAC-CCCCAGGGTGTGTTGGAGGTAAAATCCCG--------------------GGGAGTCGCT---GAAGGGG-------------GAGGTAAAGT-GGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGTGGCAAGCCCCGAGTCTGACCTTCAGCGTCAGCAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGGAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAAGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGCGCGCTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCACTCACTCCACGAGTCCAGCCACCAATCCTCCCCCAGCTCTCCCCATTCGTTTAGAGACAGAAACACAGAAGGGCAGAGAG--AGGACAGGAGGGTGGATGTAGGGACGGAATGAGTATGATTGAAACAGTGGGAGAAGAGGCTCAGCCACATAGAAACACACACCAACAG---AGAAC-------GA----GGTTAAGAGAAGCTTCGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55971907 781 +  60714840 atTAGGAGCCAGACCTGGA---TGCCctagtttt---gtgccctt-caccaagtaccttctccccagagctggtttttctcctttgcaaaatagctggctgc----agagattcaaggacagcatgttggtaaaccacccggctg----ggcctctggcacaccgcaagcacccagtGGCACCTACTGTTACCCTATGTGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTGCCCAACGGCATGTGAATGGGGAATGCTGTTTCCAGGGCAGCAAGTGAGGTGACGTCCCAC-CCCCAGGGTGTGTTGGAGGTAAAATCCCA--------------------GGGAGCCGCT--GGAGGGGG-------------GAGGTAAAGT-GGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGCGGCAAGCCCCAAGTCTGACCTTCAGTGTCAGCAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGGAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAAGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGCACGCTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCGCTCACTCCACGAGTCCAGCCACCAATCCTCCCCCAACTCTCCCCATTCGTTTAGAGACAGAAACACAGAAGGGCAGAGAG--GGGACAGGAGGGTGGACGTAGGGACAGAATGGGTATGACTGAAACAGTGGGAGAAGAGGCTCAGCCACACAGAAACACACACCAACAGACAAGAAT-------GA----GGTTAAGAGAAGCTTCGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102741444 779 - 106955855 atTAGGACCTAGACCTGGA---T-CCctagtttt---gtgccctt-caccaagtaccttctccccagagctggtttttctcctttgcaaaatagctggctac----agagattcaaggacagcatgttggtaaaccacccagctg----ggcctctggcacaccgcaagcacccagtGGCACCTACTGTTACACTATGTGGGT-------------TATTTCCCCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTGCCCAAGGGCATGTGAATGGGGAATGCTGTGCCCAGGGCAGCAAGTGAGGTGACGCCCCAC-CCCCAGGGTGTGTAGGAGGTAAAATCCCG--------------------GGGAGCCGCT---GGAGGGG-------------GAGGTAAAGT-GGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGTGGCAAGCCCCGAGTCTGACCTTCAGCGTCAGCAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGGAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAGGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGCGCGCTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCACTCACTCCATCAGTCCAGCCACCAATCCTCCCCCAACTCTCCCCATTCGTTTAGAGACAGAAACACAGAAGGGCAGAGAG--AGGACAGGAGGGTGGATGTAGGGACGGAATGAGTATGATTGAAACAGTGGGAGAAGAGGCTCAGCCACATAAAAACACACACCAACAGAGAAGAAT-------GA----GGTAAAGAGAAGCTTTGAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60031208 777 +  64156825 actAGGAGCCAGACCTGGA---TGCCctagtttt---gtgccctt-caacaagtaccttttccccagagctggtttttctcctttgcagaatagctagctac----agagattcaaggacagcatgttggtaaaccacccggctg----ggcctctggctcacagcaagcacccaatGGCACCTACTGTTACCCCACATGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTG-CCAAGAGCATGTGAATGGGGAACCCCATGCCCAGGGCAGC-AGTGTGGTGGCGGCCCAC-CCCCAGGGTGTGCAGGAGGTAAAATCC----------------------CGGAGCGGCT---GGAGGGG-------------GAGGTAAAGTGGGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGTGGCAAGCCCCGAGTCTGACCTTCAGTGTCAGTAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGCAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAAGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGTGCGTTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCACCCACTCCCCGAGTCCAGCCACCAATCCTCCCCCAACTCTCCCCATTCATTCAGAGACAGAAACACAGAAGGGCAGAGAGAGAGGACTGGAGGGTGGATGTAGGGACGGAATGAGTATGATTGAAATG--GGGAGAAGAGGCTCAGCCACACAGAAACACACAGCAACAGAGAAGAAC-------GA----GATTCAGAGAAGCTTCAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55056780 777 +  59248254 aCTAGGAGCCAGACCTGGA---TGCCCTAGTTTT---GTGCCCTT-CAACAAGTACCTTTTCCCCAGAGCTGGTTTTTCTCCTTTGCAGAATAGCTAGCTAC----AGAGATTCAAGGACAGCATGTTGGTAAATCACCCCGCTG----GGCCTCTGGCTCACAGCAAGCACCCAATGGCACCTACTGTTACCCCACATGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTG-CCAAGAGCATGTGAATGGGGAACCCCATGCCCAGGGCAGC-AGTGTGGTGGCGGCCCAC-CCCCAGGGTGTGCAGGAGGTAAAATCC----------------------CGGAGCGGCT---GGAGGGG-------------GAGGTAAAGTGGGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGTGGCAAGCCCCGAGTCTGACCTTCAGTGTCAGTAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGCAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAAGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGTGCGTTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCACCCACTCCCCGAGTCCAGCCACCAATCCTCCCCCAACTCTCCCCATTCATTCAGAGACAGAAACACAGAAGGGCAGAGAGAGAGGACTGGAGGGTGGATGTAGGGACGGAATGAGTATGATTGAAATG--GGGAGAAGAGGCTCAGCCACACAGAAACACACAGCAACAGAGAAGAAC-------GA----GATTCAGAGAAGCTTCAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47159086 777 +  51301725 ACTAGGAGCCAGACCTGGA---TGCCCTAGTTTT---GTGCCCTT-CAACAAGTACTTTTTCCCCAGAGCtgctttttctcctttgcaaAATAGCTAGCTAC----AGAGATTCAAGGACAGTATGTTGGTAAACCACCCAGCTG----GGCCTCTGGCTCACAGCAAGCACCCAATGGCACCTACTGTTAACCCACATGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTG-CCAAGAGCATGTGAATGGGGAACCCCATGCCCAGGGCAGC-AGTGTGGTGGCGGCCCAC-CCCCAGGGTGTGCAGGAGGTAAAATCC----------------------gggagcggct---ggagggg-------------gaggtaaagtggggag----gtgaaggggcccacagggaggctggagg-ggagTGGCAAGTCCCGAGTCTGACCTTCAGCGTCAGTAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGCAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAGGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GAG-CAAAAGCAGGAGGTGCGTTGTGTTGGGCACAGAAGTCTCGGCCTTGGCCACCCACTCCCCGAGTCCAGCCACCAATCCTCCCCCAACTCTCCTCATTCATTCagagacagaaacacagaagggcagagagagaggacTGGAGGGTGGATGTAGGGACGGAATGAGTATGATTGAAATG--GGGAGAAGAGGCTCAgccacacagaaacacacagcaACAGAGAAGAAC-------GA----GGTTCAGAGAAGCTTCAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46863320 777 +  50890351 aCTAGGAGCCAGACCTGGA---TGCCCTAGTTTT---GTGCCCTT-CAACAAGTACCTTCTCCCCAGAACTGGTTTTTCTCCTTTGCAGAATAGCTAGCTAC----AGAGATTCAAGGACAGCATGTTGGTAAACCACCCAGCTG----GGCCTCTGGCTCACAGCAAGCACCCAATGGCACCTACTGTTACCCCACATGGGT-------------TATTTCCTCACCCCA-GGAGGAGCTGGGAGGTGAAGACCTG-CCAAGAGCATGTGAATGGGGAACCCTATGCCCAGGGCAGC-AGTGTGGTGGCGGCCCAC-CCCCAGGGTGTGCAGGAGGTAAAATCC----------------------GGGAGCGGCT---GGAGGGG-------------GAGGTGAAGTGGGGAG----GTGAAGGGGCCCACAGGGAGGCTGGAGG-GGAGTGGCAAGCCCCGAGTCTGACCTTCAGCGTCAGTAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGCAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAGGTCCAGGCCAGAGCCAGGGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGTGCGTTGTGTTGGGCACAGAAGTCTCAGCCTTGGCCACCCACTCCCCGAGTCCAGCCACCAATCCTCCCGCAACTCTCCCCATTCATTCAGAGACAAAAACACAGAAGGGCAGAGAGAGAGGACTGGAGGGTGGATGTAGGGATGGAATGAGTATGACTGAAATG--GGGAGAAGAGGCTCAGCCACACAGAAACACACAGCAACAGAGAAGAAC-------GA----GGTTCAGAGAAGCTTCAGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45445895 765 +  49145316 TGAAGGAGCCAGACCTGGG---TGTCCTAGTTTTTGAAGGTACTT-CACCAAGTACCTTCTCCCCAGAGCTGGTTTTTCTCCTTTGCAACACAGCTGGCTGC----AGAGATTCCAGGAGAGCACGTGAGTAAA-CACCCAGCTG----GGCCTCTGGCACACCACAAGCACTTAATGGCACTGACTGTTACCCTCCATGGGC-------------CATTTCTTCACCCCA-GGAGGGGCTGAGAGGTGAAGACCTGCCCAGGGGCATGTGAATGGGGAATCCTA--CCCAGGGCAGCAGGTGGGGTGATGTCCCAC-CCCCAGGGTGTGTGGGAGGTAAAATCCCC--------------------CGGAGCAGCT---GGAGGGGAGTAGTGAGCCCCGAGTCAGAGTAGTGAGCCCCGAGTCGGAG----TAGTGAGCCCCGAGTCGGAGTAGTGAGCCCCGAGTCTGACCTTCAGCGTGAGCAGCAGCTGGACGGCATTGGTGAAGGGCGTGGGAGTAGGCAGGCCCAGCAGGCTGAGGGCTCGGAAGAACAGGAGATAGGAGAAAGTCCAGGCCAGGGCCAGAGCGTGGCAGGAGCT-GGG-CAAAAGCAGGAGGCGCGTCGTGGTGGGCACAGAGGTCTCGGCCTTGGCCTCCC-----------------------TGTCCCCCAGCTCTCCCCATTCGTTCAGAGACAGAA--ACAGACGGGCAGAGAG--AGGACTGGAGGGTGGATG--GAGATGGAATGAGTATGACTGAAAC---GGGAGAAGAGGCTCAGCCACACAGAAACACACAGCAACAGAGAAGAAT-------GA----GGTTCAGAGGAGCTTCGGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3690860 723 + 145441459 atgaaaaaCCAAACCTGCACTTTGTCCCAGCTTT---GAGCCCTTGGGCCGGATACCTTCTCTATAGAG-TAATTTTCCTCCTTGG-AGGACGGTTTGCTAC------AGACTCAAGAAGAGCATGTTAGCAAAACACACTGGGGAGGAAGATTCTAGGT--------GTGCCAAATGGC---TTGTGATAGAGCACTCAGGT-------------TATCTCCTTATCCTG-CAATGAGTGGAGAGGTGAAGACTTGCTCCAGAGGATGTGGGAGGTGAACTCTGTCCCCAG-------GGAGAAATGAAGTCCCAA-GCTTAGGGTTTGTGAAAGATAAAACTCCACAGCCCT--CCCCCTACTATGAGAAAGTCT---GGGAGGA-------------GA----AAGCAAGGAG----GCTCCCCAGCTCCCAGGGAGACTAAAA--GAAGTAGTGTTCGCCAAGTCTCACCTTCAGTGTCAACAGCAGCTGGACAGCATTGGTGAAGGGCGTGGGAGTGGGCAGGCCCAGCAGGCTGAGGGCTCGGAAGAAGAGGAGATAGGAGAAGGTCCAGGCAAGAGCCAGGGCATGGCAGGAGCTAGGA-CAGAGGTGGGAAGT-CATAATGTTGGGTACAGGGACCTTAGCCTCTGTTTCCTTCTCCTGAGAT----------ACCCACCCCCGCCCCTGCCCA--CATTCAGACAGAGAA-----GAAGAGGTGAGAA----GACTGGTGAGT-----------------------------AACAGAGACAGAAGAGGCACAGCCAGAGATA-------------AGAAAAGAAT-------GACCGGCATTAAGAGAAGCTTCTGG
i mm10.chr7                 I 219 I 59
s canFam3.chr1               19648562 700 - 122678785 atAAAGAGCCAGACATCGG---TGTCCTGGTTCT---GTGCCCTT-AGAGAAGTGCTTTCTCTCCAAAGCTGTTTCTCCTACCTTGCTAAATGGTTTGCTACCAACACATGCTCCTGGAGAACACGTTGGTAAAGCACTTAGCT-----CACCTCTGGCAAATGGCAAACACC----------TACGGTTACATTACATAGATGGGGGTGTGGGTGTACTTCTCTACCCCAGGGAATAGCTGAGAGGTGAAGATCTGCCCCAGAGCATG------------------------------AAGGAGGTACCTTCCCACGTCCTGGGGTGCGGGGGAGGTAAGACCCCACTTCCCCTGCTCCCCAC---GGGAGTAGGTCGGGAAGGAG-------------GAGGTGAAAA-TGGGA----GTTCAAGGGTACAAAGAGGGGCTGGAGG-GG--------------CATCTGACCTTGAGTGTGAGCAGCAGCTGAACCGCATTGGTGAAGGGTGTGGGGGTGGGGAGGCCCAGCAGGCCGAGCGCACGGAAGAACAGCAGGTACGAGAAGGTCCAGGCCAGGGCGAGGGCGTGGCAGGAGCT-GGGACAGAGGAAGGCCGCAGGCTGTGTTTGGTGCAGGGCCCTT-GCCTCTGCCTCCC----CCAGAGTCTAGCTCCAGAACCTCCCCCACCACCACTCC-------------------------------------AAAAATGGGGGGTGGT--------------------------------AGAAGAAGGGGCGCAGCCCCACAGAAATGTGCCATGCCAGAGAAGAGCATGAGAAGG----GGTCAGGAGAAGCTTTAGG
i canFam3.chr1              C 0 I 1

a score=402706.000000
s hg38.chr19_GL949751v2_alt    162530 126 +   1002683 TGAAGACCCTGCAATCCTCCACTTTTTCTTTATTTCCGAGGTCCAGGGCTCAAGAAGAGAGAGGTGGATATGA-ATGAATATGAACGGTGGCCAGGCCAGCAGACACACTGTCCACCTCTCTCCATG----
s panTro4.chr19              59095236 126 +  63644993 TGAAGACCCTGCAATCCTCCACTTTTTCTTTATTTCCAAGGTCCAGGGCTCAAGAAGAGAGAGGTGGATATGA-ATGAATATGAACGGTGGCCAGGCCAGCAGACACACTGTCCACTTCTCTCCATG----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55972688 126 +  60714840 TGAAGACCCTGCAATCCTCCACTTTTTCTTTATTTCCAAGGTCCAGGGCTCAGGAAGAGAGAGGTGGATATGA-ATGAATATGAACGGTGGCCAGGCCAGCAGACACACTGTCCACCTCTCTCCATG----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742223 126 - 106955855 TGAAGACCCTGCAATCCTCCACTTTTTCTTTATTTCCAAGGTCCAGGGCTCAAGAAGAGAGAGGTGGATATGA-ATGAATATGAACGGTGGCTGGGCCAGCAGACACAACGTCCACCTCTCTCCATG----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60031985 126 +  64156825 TGAAGACCCTGCACTCCTCCACTTTTTCTTTATTTCCAAGGTCCAGGGCTCAAGAAGAGGGGGGTGGATATGA-ATGAATATGAACGGTGGCAGGGCCAGCAGACACACCATCCACCTCTCTCCATG----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057557 126 +  59248254 TGAAGACCCTGCACTCCTCCACTTTTTCTTTATTTCCAAGGTCCAGGGCTCAAGAAGAGGGGGGTGGATATGA-ATGAATATGAACGGTGGCAGGGCCAGCAGACACACCATCCACCTCTCTCCATG----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47159863 126 +  51301725 TGAAGACCCTGCACTCCTccgctttttctttatttccaaggTCCAGGGCTCAAGAAGAGGGGGGTGGATATGA-ATGAATATGAACGGTGGCAGGGCCAGCAGACACACCATCCACCTCTCTCCATG----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46864097 126 +  50890351 TGAAGACTCTGCACTCCTCCGCTTTTTCTTTATTTCCAAGGTCCAGGGCTCAAGAAGAGGGGGGTGGATATGA-ATGAATCGCAACGGTGGCAGGGCCAGCAGACACACCATCCACCTCTCTCCATG----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45446660 122 +  49145316 TGAAGACCCTGCAATCCTTCACTTTTTCTTTATTTCCAAGGTCCAGGGCTCAAGAAGAGGGGGCTGGAT-----ATGAATATGAATGGTGGCGGGGCCAGCAGACACACTGTCCTTTTCTCTCCATG----
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19649263 125 - 122678785 TGAAAACCCACAGGGCCTCCATCTTTTCTG------CAGGAGGCGAGAAAAAAGGAGGGAGAAAGAGACATAATACAAACACGAATGGTGGCAGGGCCAGCACACAAACGCCCCTTCCTCCTGAATACAGG
i canFam3.chr1              I 1 C 0
e mm10.chr7                   3691583  59 + 145441459 I

a score=125141.000000
s hg38.chr19_GL949751v2_alt    162656 35 +   1002683 ACATGGATGTAGCGGACTGGGACAAACACACAGGG
s panTro4.chr19              59095362 35 +  63644993 ACATGGATGTAGCGGACTGGGACAAACACACAGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55972814 33 +  60714840 ACATGGATGTAGCGGACTGGGACAA--ACACAGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742349 35 - 106955855 ACGTGGATGTAGCGGACTGGGACAAACACACAGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032111 35 +  64156825 ACATGGATGTAGCGGACTGGGACAAACACACAGGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057683 35 +  59248254 ACATGGATGTAGCGGACTGGGACAAACACACAGGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47159989 35 +  51301725 ACATGGATGTAGCGGACTGGGACAAACACACAGGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46864223 35 +  50890351 ACATGGATGTAGCGGACTGGGACAAACACACAGGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45446782 28 +  49145316 ACATAGATGTAGCAGACTGGGACAAACA-------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3691642 35 + 145441459 ACATGGATACTGAGGACTGGGGCAAAGACACAAGG
i mm10.chr7                 I 59 I 24
s canFam3.chr1               19649388 31 - 122678785 ATCTGGATGTTAAGGATCAGGTCAATCGCAC----
i canFam3.chr1              C 0 C 0

a score=230043.000000
s hg38.chr19_GL949751v2_alt    162691 91 +   1002683 ACCAGACGCAGAAGGCAGGGGAGAAAGAAAAGCAGATGA--Aggccggatacggtggctcacgcctgtaatcccagcactttggaaggctgag
s panTro4.chr19              59095397 91 +  63644993 ACCAGATGCAGAAGGCAGGGGAGGAAGAAAAGCAGATGA--Aggccggatgcggtggctcacgcctgtaatcccagcactttggaaggctgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55972847 91 +  60714840 ACCAGACACAGAAGGCACGGGAGGAAGAAAAGCAGATGA--Aggccgggcgcagtggctcaagcctgtaatcccagcactttgggaggctgag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742384 91 - 106955855 ACCAGACGCAGAAGGCAGGGGAGGAAGAAAAGCAGATGA--Aggccgggcgcggtggctcacgcctgtaatcccagcactttgggtggctgag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032146 93 +  64156825 ACCAGATGCAGAAGGCGGGGGAGGAAGAAAAGCAGATGAAGAggctgggtgtggtggctcacgcccgtaattccagcactttgggaggctgag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057718 93 +  59248254 ACCAGATGCAGAAGGCGGGGGAGGAAGAAAAGCAGATGAAGAggctgggtgtggtggctcacgcccgtaattccagcactttgggaggctgag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47160024 93 +  51301725 ACCAGATGCAGAAGGCGGGGGAGGAAGAAAAGCAGATGAagaggctgggtacggtggctcacgcccataattccagcactttgggaggctgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46864258 93 +  50890351 ACCAGATGCAGAAGGCGGGGGAGGAAGAAAAGCAGATGAAGAggctgggtatggtggctcatgcccgtaattccagcactttgggaggctgag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45446810 83 +  49145316 --------CAGAAGGCAACGGGGGAAGAGAAACAGATGA--Gggccaggccaagtggctcatgcctgtaatcccagcactttgggaggtgaag
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19649419  9 - 122678785 ------------------------------------------------------------------------------------AGGGATGAG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3691677 24 + 145441459 I

a score=261103.000000
s hg38.chr19_GL949751v2_alt    162782  96 +   1002683 gtgggcagatcac--aaggtcaggagttcgagatcagcctgaccaacatggagaaaccccgg----------------------------------------------------------------------------------------ctctattaaaaattcaagattagccaggcgtggtgg
s panTro4.chr19              59095488  96 +  63644993 gcgggcagatcac--aaggtcaggagttcgagatcagcctgaccaacatggagaaaccccgg----------------------------------------------------------------------------------------ctctattaaaaattcaaaattagccaggcgtggtgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55972938  96 +  60714840 gcgggcagatcac--aaggtcaggagttcgagatcagcctgaccaacacggagcaaccccgt----------------------------------------------------------------------------------------ctctactaaaaattcaaaattagccaggcgtggtgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742475  96 - 106955855 gcgggcagatcac--aaggtcacgagttcgagatcagcctgaccaacatggagaaaccccgt----------------------------------------------------------------------------------------ctctactaaaaattcaaaattagccaggcgtggtgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032239  96 +  64156825 gcaggcagatcac--aaggtcaggagttcgaaaccagcctgaccaacatggagaaaccccat----------------------------------------------------------------------------------------ctctactgaaaatacaaaattagccaggcatggtgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057811  96 +  59248254 gcaggcagatcac--aaggtcaggagttcgaaaccagcctgaccaacatggagaaaccccat----------------------------------------------------------------------------------------ctctactgaaaatacaaaattagccaggcatggtgg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47160117  96 +  51301725 gcaggcagatcac--aaggtcaggagttcgaaaccagcctgaccaacatggagaaaccccat----------------------------------------------------------------------------------------ctctactaaaaatacaaaattagccaggcatggtgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46864351  96 +  50890351 gcaggcagatcac--aaggtcaggagttcgaaaccagcctgaccaacatggagaaaccccat----------------------------------------------------------------------------------------ctctactaaaaatacaaaattagccaggcatggtgg
i chlSab2.chr6              C 0 I 1731
s calJac3.chr22              45446893 186 +  49145316 gcaggcggatcacctgaggtcaggggttcgagacacacctggccaacatggagaaacccagtctctttttttaaaattgtttttattttttaaaCTTTTTACCTGTAATTTACAACCATTTTCTTTTTCTTCTTATTTATTTGCTTCAGCctctactaaaaatataaaattagccaggcgtggtgg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3691677  24 + 145441459 I
e canFam3.chr1               19649428   0 - 122678785 C

a score=122931.000000
s hg38.chr19_GL949751v2_alt    162878 53 +   1002683 agcatgcctgtagtcccagctacttgggaggctgaggcaagagaatcgcttga
s panTro4.chr19              59095584 53 +  63644993 agcatgcctgtaatcccagctacttgggaggctgaggcaagagaatcgcttga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973034 53 +  60714840 cgcatgcctgtaatcccagctactcgggaggctggggcaagagaatcgcttga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742571 53 - 106955855 cgcatgctggtaatcccagctactcgggaggctggggcaagagaatcgcttga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032335 53 +  64156825 tgcatgcctgtaatcccagctacgcgagaggctggggcaagagaatcgcttga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057907 53 +  59248254 tgcatgcctgtaatcccagctactcgagaggctggggcaagagaatcgcttga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47160213 53 +  51301725 tgcatgcctgtaatcccagctactcgggaggctggggcaagagaatcgtttga
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45447079 53 +  49145316 cgcatgcctgtaatcccagttactcaggaggccgaggcaggagaatcacttaa
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3691677 24 + 145441459 I
e canFam3.chr1               19649428  0 - 122678785 C
e chlSab2.chr6               46864447 1731 +  50890351 I

a score=83384.000000
s hg38.chr19_GL949751v2_alt    162931 39 +   1002683 accc-gggaggtggaggttgcagtgagccaagatcgtgcc
s panTro4.chr19              59095637 39 +  63644993 accc-gggaggtggaggttgcagtgagccaagatcgtgcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973087 39 +  60714840 accc-gggaggtggaggttgcagtgagccgagatggcgcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742624 39 - 106955855 accc-gggaggtggaggttgcagtgagccaagatcgcgcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032388 39 +  64156825 acct-gggaggtggaggttgcagtgagctgagatcgcacc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057960 39 +  59248254 acct-gggaggtggaggttgcagtgagctgagatcgcacc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47160266 39 +  51301725 accc-gggaggtggaggttgcagtgagctgagatcgcacc
i papAnu2.chr19             C 0 M 776
s calJac3.chr22              45447132 40 +  49145316 acccggggaggtggaggtggcagtgagctgagattgtacc
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19649428  9 - 122678785 ACCC-AGAAG------------------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3691677 24 + 145441459 I
e chlSab2.chr6               46864447 1731 +  50890351 I

a score=121053.000000
s hg38.chr19_GL949751v2_alt    162970 105 +   1002683 actgaactgcagcctgggcaacaggagcgaaactccatctc-aaaaagaaagaaagaaagaaaaacaaacaaACAAACAAACATGAAACAGAGAAATGAGCTGATC
s panTro4.chr19              59095676  93 +  63644993 actgaactgcagcctgggcaacaggagcgaaactccatctc-aaaaagaaagaaagaaa------------aacaaacaaaCATGAAACAGAGAAATGAGCTGATC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973126 104 +  60714840 actgaactgcagcctgggcgacaggagcgaaactccatctcaaaaaaaaaagaaagaaagaaaagaaaa--aaATAACAAACATGAAACAAAGAAATGAACTGATC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742663  95 - 106955855 actgaactgcagcctgggcaacaggagcgaaactccatctc-aaaaagaatgaaagaaaga----------aacaaacaaaCACGAAACAGAGAAATGAGCTGATC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032427  99 +  64156825 attgaactccagcctgggcaataagagcgaaactccatctcaaaaaagaaagacagaaagaaaa-------aaaaaaaAAACATGAAACAGAGAAGGGAGCTGATC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55057999  99 +  59248254 attgaactccagcctgggcaataagagcgacactccatctcaaaaaagaaagaaagaaagaaag-------aaaaaaaAAACATGAAACAGAGAAGGGAGCTGATC
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45447172  86 +  49145316 actgctctccagcctgggcaacaagagtgaatttccgtctcagaaaagaaaagaaga--------------aaCAG------ATGACACAAAGAAACAAACTGGTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19649437  54 - 122678785 ------------------------------------------AAAAGGCACGAGAGGAAGAGA--------AACAGACCAA-ACGACACAGTGAGTTCAGA-GATA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3691677  24 + 145441459 I
e chlSab2.chr6               46864447 1731 +  50890351 I
e papAnu2.chr19              47160305 776 +  51301725 M

a score=176406.000000
s hg38.chr19_GL949751v2_alt    163075  91 +   1002683 AACAAG--------AGACAGCTAGAGATGAGGCAGAAGCTGAAAAAGACTCAAAGAGGAAACAGGTTGCTTCCC----------cctctcccctcctctccctctcctc
s panTro4.chr19              59095769  91 +  63644993 AACAAG--------AGACAGCTAGAGATGAGGCAGAAGCTGAAAAAGACTCAAAGAGGAAACAGGTTGCTTCCT----------CCTCTCCCCTCCTCTCCCTCTCCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973230  91 +  60714840 AACAAA--------AGACAGCCAAAGACGAGGCAGAAGCTGAGAAAGACTCAAAGAGGAAACAGGTTGCTTCCC----------CCTCTCCCCTCCTCTCCCTCTCCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742758  91 - 106955855 AACAAG--------AGACAGCCAGAGATGAGGCAGAAGCTGAGAAAGACTCAAAGAGGAAACAGGTTGCTTCCC----------cctctcccctcctctccctctcctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032526  99 +  64156825 AACAAGAGACAGCCAGACAGCCAGAGATGAGGCAGAAGCTGAAAAAGACCCAAAGAGGAAACAGGTTGCTTCCT----------CCTCTGCCCTCCTCTCCCTCTCCTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55058098  99 +  59248254 AACAAGAGACAGCCAGACAGCCAGAGATGAGGCAGAAGCTGAAAAAGACCCAAAGAGGAAACAGGTTGCTTCCT----------CCTCTGCCCTCCTCTCCCTCTCCTC
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45447258 101 +  49145316 AACAAG--------AGACAGCCAGAGATGAGGCAGAAACTGAGAAAGACACAGAGAGGAAACAGGTTGCTTCCCTctttcccttcctctcccctcctctccctctcttc
i calJac3.chr22             C 0 I 1268
s mm10.chr7                   3691701  87 + 145441459 AGCGAC--------ACACAGTAAGAT-TAAAGGAGAAGAAATAGAAGACTCGAAGAGGAAACAGACTGCTGCTT-----------CTCTGCATCCTTCTTCCTTTCT--
i mm10.chr7                 I 24 C 0
s canFam3.chr1               19649491  56 - 122678785 AGCAAG--------AGATGTCCAGAGA-----CAGAGGCAGAAAGGGAC----AGA---------------CCT----------CCTCCCCACTCCTC-----------
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46864447 1731 +  50890351 I
e papAnu2.chr19              47160305 776 +  51301725 M

a score=411743.000000
s hg38.chr19_GL949751v2_alt    163166 128 +   1002683 cctcCACCAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCGAGGATGGTGACCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAACAGGGTGAGCCCCAGGCCCACAGCGGCTGCTCC
s panTro4.chr19              59095860 128 +  63644993 CCTCCACCAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCGAGGATGGTGACCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAACAGGGTGAGCCCCAGGCCCACAGCGGCTGCTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973321 128 +  60714840 CCTCCACCAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCGAGGATGGTGACCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAACAGGGTGAGCCCCAGGCCCACAGCGGCTGCCCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742849 128 - 106955855 cctcCACCAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCGAGGATGGTGACCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAACAGGGTGAGCCCCAGGCCCACAGCGGCTGCCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032625 128 +  64156825 CCTCCACCAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCAAGGATGGTGATCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAACAGGGTGAGCCCCAGGCCCACAGCAGCTGCCCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55058197 128 +  59248254 CCTCCACCAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCAAGGATGGTGATCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAACAGGGTGAGCCCCAGGCCCACAGCAGCTGCCCC
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45448627 128 +  49145316 cctccctcAAATTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTCCCGAGGATGGTGATCAGAGAATGCAAAGTGTGGGGGCCACAGGTGAATAGGGTGAGCCCCAGGCCCACAGCAGCTGCCCC
i calJac3.chr22             I 1268 C 0
s mm10.chr7                   3691788 127 + 145441459 -CACCACCTAGTTCTCACCAGGGCTGGGCCTGAATGAGGGCCCAGGTTCCCAAGATGGTGATCAGAGAATGCAAACTGTGGGGGCCACAGGTGAATAAGGTGAGCCCCAGGCCCACAGCTGCTGCCCC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19649547 128 - 122678785 CTCCCACCAAATCCTCACCAGGGCTGGGCCTGGATGAGGGCCCAGGTCCCAAGGATGGTGATCAGAGAATGCAAAGTGTGGGGGCCGCAGGTGAACAAGGTGAGCCCCAGGCCCACGGCTGCTGCCCC
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46864447 1731 +  50890351 I
e papAnu2.chr19              47160305 776 +  51301725 M

a score=882135.000000
s hg38.chr19_GL949751v2_alt    163294 269 +   1002683 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT---------------------CCCCCCCCTTTATTTTCCACTGGGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATACGTCCATTCTTCAGGCGACATGGTCTGGGGGAGGGGCAGAGATTCACAGTGAGAACCCAGGAATCCAGGCCCCCTGCCTCCTCCCTCTTCGAGGATCCAGGAACCCAG
s panTro4.chr19              59095988 269 +  63644993 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT---------------------CCCCCCCCTTTATTTTCCACTGGGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATACGTCCATTCTTCAGGCGACATGGTCTGGGGGAGGGGCAGAGATTCACAGTGAGAACCCAGGAATCCAGGCCCCCTGCCTCCTCCCTCTTCGAGGATCCAGGAACCCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973449 268 +  60714840 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT----------------------CCCCCCCTTTATTTTCCACTGGGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCAATGGGGATGGAGATAAGAAGAACCACTAGATATGTCCATTCTTCAGGCGACATGGTCTGGGGGAAGGGCAGAGATTCACAGTGAGAACCCAGGaatccaggccccctgcctcctccctctacgaggatccaggaatccag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102742977 268 - 106955855 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT----------------------CCCCCCCTTTATTTTCCCCTGGGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATAGGTCCATTCTTCAGGCGACATGGTCTGGGGGAGGGGCAGAGATTCACAGTGAGAACCCAGGAATCCGGGCCCCCTGCCTCCTCCCTCTTCGAGGATCCAGGAACCCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60032753 268 +  64156825 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT----------------------CCCCCCCTTTATTTTCCACTGCGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATACGTCCATTCTTCTGGCGACATGGTCTGGGGGAGGGGCAGAGATTCACAGTGAGAACCCAGGAATCCAGGCCCCCTGCCTCCTCCCTCTTCCAGGATCCAGGAACCCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55058325 268 +  59248254 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT----------------------CCCCCCCTTTATTTTCCACTGCGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATACGTCCATTCTTCAGGCGACATGGTCTGGGGGAGGGGCAGAGATTCACAGTGAGAACCCAGGAATCCAGGCCCCCTGCCTCCTCCCTCTTCCAGGATCCAGGAACCCAG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46866178 268 +  50890351 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGCATAAGCCTGGAACCTTCCAGAGGGT----------------------CTCCCCCTTTATTTTCCACTGCGGAGGGAGCCTGACTCACCGGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATACGTCCATTCTTCAGGCGACATGGTCTGGGGGAGGGGCAGAGATTCACAGTGAGAACCCAGGAATCCAGGCCCCCTGCCTCCTCCCTCTTCGAGGATCCAGGAACCCAG
i chlSab2.chr6              I 1731 C 0
s calJac3.chr22              45448755 229 +  49145316 CCATCTCTTCAGCCCAGGACCTGCAGGGGGAAGGGACAGAATAAGCCTGGAACCTTCCAGAGGGT----------------------CCCCCCC-TTATTTTCCACTGGGGAGGGAACCTGACTCACCAGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATAAGAAGAACCACTAGATACGTCCATTCTTCAGGAGACATGGTCTGGGGGAGGGGC--AGATTCACTGTGAGAACCCAGGAATCCAGG------------------------------------CAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3691915 233 + 145441459 CCATCTCTTCAGCCCAGGTCCTGAAAGGAAAAGGTAAAGTATAAGCCTAGAACCTTCGGGAGGGGTGATTCCCCACC---CCAGCTCCCTCACCCTAATTTTCCACTAGACAAGGAACCTGACTCACCAGCTTTCTTAAAGAGGAAGCCAACAGGGATGGAGATAAGAAGGACCATTAGATATGTCCATTCTTCGGGTGTCATGGTCTGGGGGAGG---AAGGACTCACAGTGAGAACC---------------------------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19649675 262 - 122678785 CCATCTCTTCAGCCCAGGTCCTGCAAAGAGAAGGGAGAGCATAAGCCTGGAACCTTCCAGGGAGC-----TCCTGCCGGGTTCCCCCCCCCTCCCCCAGTTTCCACTAGGGAGGGAACCTAACTCACCAGCTTTCTTAAAGAGGAAGCCGATGGGGATGGAGATGAGAAGCACCACTAGATAAGTCCATTCTTCAGGCGACATGGTCTGGGGGAGGGGCAGAGGTTCCTAGTGAGGCCC-----------------------CTCCCCCCTGGAGGGTTCAGGAACCCAC
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47160305 776 +  51301725 M

a score=1690470.000000
s hg38.chr19_GL949751v2_alt    163563 542 +   1002683 --CCTTCTAGACCCCAGTTTTTGAGGATGATGGAGTATGAGCCTCAGCTCCTCTCCTTTGAGAACCTAGCAACCCGGA-CTCCAGCCCCTTCCTCCTTGGAGGAGACAGGAATCCA-CCCCCAGCCC--CTCCTTT--GAGCGCACAGGCCTCCAGCTCTCCTGTCCTTGGAGAACCCAGGAAAGTGTGGGGATCTCCCAG--CACCCAAGCCCCTCCTTTGCGAACGCAGAAATCAAAGCTACTCCCCGCACCCATACTGGGGACCCAGATTTGAAGACGCCCCTCTTTTAAAAACCCAGAAACGGCACCCCTCCCGG-ACCCTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGAGCCCCCTCTTCCAG---CGAGGATCCAGGAACCCAGACCCCCTCTTTGGATCCCCCAT--CCCCCGGCCCTTGTGAAACCAGATATCCGGACC-CCCCAGCCCTTCT------TCGAGACCACCCAGAGGAGCCC-GGGTCTCCAACCT-GCACCTCCT----TCGGAGCTCCACACCCCTCTCCTACTGAGAACCCGGGGATCGAACACCC
s panTro4.chr19              59096257 542 +  63644993 --CCTTCTAGACCCCAGTTTTTGA---TGATGGAGTCTGAGCCTCAGCTCCTCTCCTTTGAGAACCTAGCAACCCGGA-CTCCAGCCCCTTCCTCCTTGGAGGAGACAGGAATCCA-CCCCCAGCCC--CTCCTTT--GAGCGCACAGGCCTCCAGCTCTCCTGCCCTTGGAGAACCCAGGAAAGTGTGGGGATCTCCCAG--CACCCAAGCCCCTCCTTTGCGAACGCAGAAATCAAAGCTACTCCCCGCACCCATACTGGGGACCCAGATTTGAAGACGCCCCTCTTTTAAAAACCCAGAAACGGCACCCCTCCCGG-ACCGTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGAGCCCCCTCTTCCAG---CGAGGATCCAGGAACCCAGACCCCCTCTTTGGATCCCCCAT--CCCCCGGCCCTTGTGAAACCAGATATCCGGACC-ACCCAGCCCTTCT---CCTTCGAGACCACCCAGAGGAGCCC-GGGCCTCCAACCT-GCACCTCCT----TCGGAGCTCCAGACCCCTCTCCTACTGAGAACCCGGGGATCGAACACCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55973717 545 +  60714840 --ccctctagaccccagtttttgaggatgatggagtccgagcctcagctcctctcctttgagaacctagcaacacaga-ctccagccccttcctccttggaggagacaggaatcca-cccccagccc--ctcctTT--GAGAGCACAGGCCTCCAGCTCTCCTCTCCTTGGAGAACCCAGGAAAGTGTGGGGATCTCCCAG--CACCCAGGCCCCTCCTTTGCGAACGCAGAAATCAAAGCTACTCCCCGCACGCATACTACGGACCCAGATTTGAAGACGCCTCTCTTTTAAAAACCCAGAAACAGCACCCCTCCCGG-ATCCTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGA-CCCCCTCTTCCAC---CGAGGATCCAGGAACCCAGACCACCTCTTTGGATCCCCCAT---CCCCGGCCCTTGTGAAACCAGATATCCGGACC--CCCAGCCCTTCTTCTCCTTCGAGACCACTCAGAGGATCCC-GGGCCTCCAGCCT-GCACCTCCT----TCGGAGCTCCAGACCCCTCTCCTACTGAGAACCCAGGGATCGAACACCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102743245 548 - 106955855 --CCCTCTAGACCCCAGTTTTTGAGGATGTTGAAGTCTGAGCCTCAGTTCCTCTCCTTTGAGAACCTAGCAACCCGGA-CTCCAGCCCCTTCCTCCTTGGAGGAGACAGGAATCCA-CCCCCAGCCCCTCTCCTTT--GAGCGCACAGGCCTCCAGCTCTCCTCTCCTTGGAGAACCCAGGAAAGTGTGGGGATCTCCCAG--CACCCAGGCCCCTCCTTTGCGAACGCAGAAATCAAAGCTACTCCCCGCACCCATACTGGGGACCCACATTTGAAGACGCCCCTCTTTTAAAAACCCAGAAACAGCACCCCTCCCGG-ACCCTTCCTCTTCGACAGCCCAGGAATCTAGACTTCCGAGCCCCCTCTTCCAG---AGAGGATCCAGGAACCCAGACCCCCTCTTTGGATCCCCCAT--TCCCCGGCCCTTGTGAAACCAGATATCCGGACCCCCCCAGCCTTTCT---CCTCCGAGACCACCCAGAGGAGCCT-GGGCCTCCAGCTT-GCGCCTCCT----TCGGAGCTCCAGACCCCTCTCCTACTGAGAACCCGGGGATCGAACACCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60033021 543 +  64156825 --CCCTCTAGACCCCAGTTTTTGAGGATGATGGagtccgagactcagctcctctcctttgagaacctaggaacccgga-ctccagccccttcctcctt---ggagacaggaatcca-cccccagcccctcTCCTAT--GAGCGCACAGGCCTCCAGCTCTCCTCTCCTTTGAGAACCCAGGAAAGCGTGGGGATCTCCCAG--CACCCAGGCGCCTCCTTTGCGAAGGCAGAAATCAAAGTTACTCCCTGCACCCATACTAGGGACCCAGATTTGAAGACGCCCCTCTTTTTAAAACCCAGAAACAGCACCCCTCCCAG-ACCCTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGAGACCCCTCTTCCAG---CGAGGATCCAGGAACCCAGACCCCCTCTTTGGATCCCCCAT--CCCCCAGCCCTTGTGAAACCAGATATCCGGACC-CCCCAGCCCTTGT---CCTTCGCGAGCACTCAGAGGAGCCC-GGGCCTCCAGCCT--CACCTCCT----TCGGAGCTCCAGACCCCTCTCCTACGGAGAACCCGGGGATCGGACACCC
i rheMac3.chr19             C 0 M 287
s macFas5.chr19              55058593 543 +  59248254 --CCCTCTAGACCCCAGTTTTTGAGGATGATGGagtccgagactcagctcctctcctttgagaacctaggaacccgga-ctccagccccttcctcctt---ggagacaggaatcca-cccccagcccctcTCCTAT--GAGCGCACAGGCCTCCAGCTCTCCTCTCCTTTGAGAACCCAGGAAAGCGTGGGGATCTCCCAG--CACCCAGGCGCCTCCTTTGCGAAGGCAGAAATCAAAGTTACTCCCTGCACCCATACTAGGGACCCAGATTTGAAGACGCCCCTCTTTTTAAAATCCAGAAACAGCACCCCTCCCAG-ACCCTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGAGACCCCTCTTCCAG---CGAGGATCCAGGAACCCAGACCCCCTCTTTGGATCCCCCAT--CCCCCAGCCCTTGTGAAACCAGATATCCGGACC-CCCCAGCCCTTGT---CCTTCGCGAGCACTCAGAGGAGCCC-GGGCCTCCAGCCT--CACCTCCT----TCGGAGCTCCAGACCCCTCTCCTACGGAGAACCCGAGGATCGGACACCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47161081 543 +  51301725 --CCCTCTAGACCCCAGTTTCTGAGGATGATGGAGTCCGAGACTCAGCTCCTCTCCTTTGAGAACCTAGGAACCCGGA-CTCCAGCCCCTTCCTCCTT---GGAGACAAGaatcca-cccccagcccctctcctAT--GAGCGCACAGGCCTCCAGCTCTCCTCTCCTTTGAGAACCCAGGAAAGCGTGGGGATCTCCCAG--CACCCAGGCGCCTCCTTTGCGAAGGCAGAAATCAAAGTTACTCCCTGCACCCATACTAGGGACCCAGATTTGAAGACGCCCCTCTTTTTAAAACCCAGAAACAGCACCCCTCCCAG-ACCCTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGAGACCCCTCTTCCAG---CGAGGATCCAGGAAcccagaccccctctttggatcccccat--cccccagcccttgtgaaaccagatatccggacc-ccccagcccTTGT---CCTTCGCGAGCACTCAGAGGAGCCC-Gggcctccagcct--cacctcct----tcGGCGCTCCAGACCCCTCTCCTACAGAGAACCCGGGGATCGGACACCC
i papAnu2.chr19             M 776 C 0
s chlSab2.chr6               46866446 529 +  50890351 --CCCTCTAGACCCCAGTTTTTGAGGATGATGGAGTCCGAGACTCAGCTCCTCTCCTTTGAGAACCTAG---------------GCCCCTTCTTCCTT---GGAGACAGGAATCCA-CCCCCAGCCCCTCTCCTAT--GAGCGCACAGGCCTCCAGCTCTCCTCTCCTTTGAGAACCCAGGAAAGCGTGGGGATCTCCCAG--CACCCAGGCGCCTCGTTTGCGAAGGCAGAAATCAAAGTTACTCGCTGCACCCATACTGGGGACCCAGATTTGAAGACGCCCCTCTTTTAAAAACCCAGAAACAGCACCCCTCCCAG-ACCCTTCCTCTTCGACAGCCCAGGAATCTAGACCTCCGAGACCCCTCTTCCAG---CGAGGATCCAGGAACCCAGACCCCCTCTTTGGATCCCCCAT--CCCCCGGCTCTTGTGAAACCAGGTATCCGGA-C-CCCCAGCCCTTCT---CCTTCGCGAGCACCCAGAGGAGCCCGGGGCCTCCAGCCT--CACCTCCT----TCGGAGCTCCAGACCCCTCTCCTACGGAGAACCCGGGGATCGGACACCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45448984 532 +  49145316 --CCCTCTGGACCCCAGTTTTTTAGGATTCCggagtccgagtctcag------------gagaacctaggaaccggga-ctccagctccttcctccttggaggagacaggaag--a-caggagactcctctcctttcagagtgcacagggctccAGCCCTCCT--CCTTTGAGAACGCAGGAAAGCGTGGGGCTCTCCCAG--CACCCAGGCCCCACCTTTTCAAATGCAGAAATCAAAGCTACTCCCTGCACCCATGCTGAAGACCCAGATTTGAAGACGCCCCTCCTTAAAAAACCCAGAAGCAGCACCCctcccgg-acccctcctctttgagagcccaggagtctagacgtccaagccccctcttccag---cgaggatccaggagcccagacccccTCTTTGCATCCCCCAT---CCCCGGCCCTTGTGAAACCAGATATTCGTAAC-CCCGAGCCCTTCT---CCTTCGAGAGCACCCAGAGGAGCCC-GGGGCTCCAGCCT-CCAACCTCT----TTGGCGCTCCAGACCCCTCTCCTATTGAGAATTCGGGGATCGGAGCCCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3692148 402 + 145441459 --------------------------------------------------------------------------AGTA-TTCCAGTCCCTTCCTCTTTTGAAGACAGTAGAAT----------------CCCCTTT--GAGAACCCAGGCCTCCAGCTCACTCCTCCTTCCAGGACCCAAGAA-------------TTAAG--CCCCCACCCCACCCCTTTGCCAATGTTGAAATCAAAAGTACTTC---TACTTCCATTTATGACCCACA-----------CCTTCC-------GGCCAGAAAAACAATCCTTCACAACACCCCTCTTCTCTGAGAGCCCAGGAATCTGTATCATCCTCACCCTCCT---------GAGTACATTGGAGCCC---------TTCTGGGTCCCCAATTTCCTCTGCGTCTTACAGGACCCAGTACTCCCACT-CCC--GCCCAGCT-----------------CGGAGAAGCCC--AGCATTTAGCATCCTGTTTTCTAAGCTCTGAGCTCTGGGCTCCTCTTTAACCCGTACCTCGGAGAGAAGGCAATG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19649937 470 - 122678785 TCCCCCGTAGTTCCCAGTTG-TGAGGGTCCTGGAGTCCTACCCTCAGCTCCTCTCCTCTGAGAACACGGAAATCTGTACCTCTAGAACCTTCCTCCTTCGAGGTTAAAGAAATCTACCCCCCAGCTCCGCTTTTCT--GAGAACCCGGGCCACCAGTCCTCTTCCCCTGTGAGAAC-CAGGAA-------------CCCAGACCTCTCAGGCCCTCTCTCTGCGATCCCAGAAATCAAAGCAACTCCCCCCGCCCCCACTGAGGTCCCAGGGATTGAGATATCGCTCT---GAGAACCCAGCAACAACCCTTGTCCCAG-GCCCTTCC-CTTGGAGAGCGCAGGATTCCAGATCTCCCGGCCTCCTCCTCCTCCTTCGAGGACCCAGCGACTCAACCCTCCC-------TCTCCGAT-----------------AACCCAGGT--------T-------------T-----------------------------CAGCCTCCAGCCT-CCACCTCCT----CCGGAGCTGCAGACCCTTCTCCCACCTGAAGCCCGGAGGACGGTCCACC
i canFam3.chr1              C 0 C 0

a score=893877.000000
s hg38.chr19_GL949751v2_alt    164105 324 +   1002683 TCCCCT-CCCCAGGCCCAGGC-CCAGGCCCAGCCCCAACCCGTCCCGCGCACCCCAGCGC------------ATCCCCGGCAGAGCCACAGGCGGTTGCGCCAGCCCCGAGTTCCAACGCGCCTCCGGGGCCG-C-CCCGCACCCGCCAGCCCGCAGAGACCCTGCCGCCGTGTAA-CCTCGCCTCGCCACTGGGCGCCGCCACCCTGGCCCACCTGA------------GCTGCTCGCCGGGCAGGAGGCGGCCGAGCAGTCCCAGCCCGCTTGCCGCCGCAGCTCCGGCCACGCCTCCCCCGCCCAGCGCGC----CCCCGCGCCGCCTGCTCCTTCTGGGCGC----CCGCCGGGCTG
s panTro4.chr19              59096799 324 +  63644993 TCCCCT-ccccaggcccaggc-ccaggcccagccccaacccGTCCCGCGCACCCCAGCGC------------ATCCCCGGCAGAGCCACAGGCGGTTGCGCCAGCCCCGAGTTCCAACGCGCCTCCGGGGCCG-C-CCCGCACCCGCCAGCCCGCAGAGACCCTGCCGCCGTGTAA-CCTCGCCTCGCCACTGGGCGCCGCCACCCTGGCCCACCTGA------------GCTGCTCGCCGGGCAGGAGGCGGCCGAGCAGTCCCAGCCCGCTTGCCGCCGCAGCTCCGGCCACGCCTcccccgcccagcgcgc----ccccgcgccgccTGCTCCTTCTGGGCGC----CCGCCGGGCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55974262 318 +  60714840 TCCCCT-------GCCCAGGC-CCAGGCCCAGCCCCAACCCGTCCCGCGCACCCCAGCGC------------ATCCCCGGCAGAGCCACAGGCGGTTGCGCCAGCCCCGAGTTCCAAAGCGCCTCCGGGGCCG-C-CCCGCACCCGCCAGCCCGCAGAGACCCTGCCGCCGTGTAA-CCTCGCCTCGCCACTGGGCGCCGCCACCCTGGCCCACCTGA------------GCTGCTCGCCGGGCAGGAGGCGGCCGAGCAGTCCCAGCCCGCTggccgccgcggctccggccacgcctcccccgcccagcgcgc----ccccgcgccgccTGCTCCTTCTGGGCGC----CCGCCGGGCTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102743793 324 - 106955855 TCCCCT-CCCCAGGCCCAGGC-CCAGGCCCAGCCCCAACCCGTCCCGCGCACCCCAGCGC------------ATCCCCGGCAGAGCCACAGGCGGTTGCGCCAGCCCCGAGCTCCAACGCGCCGCCGGGCCCG-C-CCCGCACCCGCCAGCCCGCAGAGACCCTGCCGCCGTGTAA-CCTCGCCTCGCCACTGGGCGCCGCCACCCTGGCCCACCTGA------------GCTGCTCGCCGGGCAGTAGGCGGCCGAGCAGTCCCAGCCCGCTGGCCGCCGCGGCTCCGGCCACGCCTCCCCCGCCCAGCGCGC----CCCCGCGCCTCCTGCTCCTTCTGGACGC----CCGCCGGGCTG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55059136 330 +  59248254 TTCCCT-------Ccccaggc-ccaggcccagccccaacccgtcccgcgcaccccagcGTGGGTCGGATCCAATCCCCGGCAGATCCACAGGCGGTTGCGCCAGCCCCGAGCTCTAACGCGCCTCCGGGGCCG-C-CCCGCACCCACCAGCCTGCAGAGACCCTGCAGCCGTGTAA-CCTCGCCTTGCCACTGGGCGCCGCCACCCCGGCCCACCTGA------------GCTGCTCGCCGGGCAGGAGGCGGCCGAGCAGTCCCAGCCCGCGGGCCGCTGCGGCTCCGGCCACGCCTCCCCCGCGCAGCGCGC----CCCCGCGCCGCCTGCTCCTTCTGGGCGC----CCGCTGGGCCG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47161624 330 +  51301725 TTccct-------ccccaggc-ccaggcccagccccaACCCGTCCCGCGCACCCCAGCGTGGGTCGGATCCAATCCCCGGCAGATCCACAGGCGGTTGCGCCAGCCCCGAGCTCTAACGCGCCTCCGGGGCCG-C-CCCGCACCCACCAGCCTGCAGAGACCCTGCAGTCGTGTAA-CCTCGCCTTGCCACTGGGCGCCGCCACCCCGGCCCACCTGA------------GCTGCTCGCCGGGCAGGAGGCGGCCGAGCAGTcccagcccgcgggccgccgcggctccggccacgcctcccccgcccagcgcgc----ccccgcgccgcctgctccttctgggcgc----ccgctgggccg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46866975 330 +  50890351 TTCCCT-------Ccccaggc-ccaggcccagccccaacccgtcccgcgcaccccagcGTGGGTCGGATCCAATCCCCGGCAGATCCACAGGCGGTTGCGCCAGCCCCGAGCTCTAACGCGCCTCCGGGGCCG-C-CCCGCACCCACCAGCCTGCAGAGACCCTGCCGCCGTGTAA-CCTCGCCTTGCCACTGGGCGCCGCCACCCCGGCCCACCTGA------------GCTGCTCGCCGGGCAGGAGGCGGCCGAGCAGTCCCAGCCCGCGGGCCGCTGCGGCTCCGGCCACGCCTCCCACGCCCAGCGCGC----CCCCGCGCCGCCTGCTCCTTCTGGGCGC----CCGCTGGGCCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45449516 324 +  49145316 TCCTTT-------CCCCAGGC-CCAGGCCCAG------CATGTCCCGCGCACGCCAGCGTGGGTCGGATCCCACTCCCGACAGAGCTACAGGAGGTTGCGCCAGCCCCGAACTCCAGCGCGCC-CCGGAGCCG-C-CCCGCACCCGCCAGTCCGTAGCTACCCCGCCACCGCGTGACCCCCGCCTTGCCATTGGGGGCCGCCACCCCGGCCCACCTGA------------GCCGCCCGCCGGGAAGGAGGCGGCCGAGCAGTCCCAGCCCGCGAGCCGCCGCGGCTCCGGCCACGCCTCCCCCGCCCAGTGCGC----CCCCGCGCCGCCTGCTCCTTCGGGGCGC----CCGCCGAGCCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3692550 312 + 145441459 -ACCCTGTACGATCTGCAAGCACCTTTCGTAGCCCAGCCCCGCGCAGCGAAGGCCAGCGTGTATCCGATTC-TGCCTCGGCAGATCCACAGGCGGTTACGCCA---CCCAGCCCGGCCACGCTCTGGGCGCTGTC-CCCGC------------------ACCCCGCCACCCTACGATCTTCGTGACGCCGCCATGCAACCCAACCTGGGCCCACCTGA------------ACCGTCCGTGGGCCAGAAGACTGCGGAGC---TCCTTTTCG-AGGCCGCCTCGGCTCGCGCCACGCCTCCCCAGCTCAGCACGC----CCCCGCACTGCCCG-TTCTGGAGGGCGC----CGGCAGGGCTG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19650407 299 - 122678785 ----------------------------CCAGCGCC--CCAGTTCC-----CCCCGGCGCAAGTCAGA----CCTCCCGGCAGAGCCACAGGCGGTTAcgcca-ccccgcgctccgccgcgctctcggcgcca-cacccgcccgggccggcccgccgg---tccgcaagcgc-----ccccgcctcgcccccgaggcgccccgctccggcccacctgggcccggctccgcgctgcccGCCGGGCAGAAGGCGGCGGAGCAGTCCCGGCCCACCGG-CGCCCCGGATCCGGCCACGCCTCCCTcgcccggcgcgcgcggtcccgggccg------------gtgcgcggcTCCGTCAGGCTG
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60033564 287 +  64156825 M

a score=1680104.000000
s hg38.chr19_GL949751v2_alt    164429 511 +   1002683 CGCAGATCAGGCCGGGGAAGAAGCCACGGTCAGGGCCCCGGGCGGGCAGGGAAGAAGCCCCGGAGCAGAAGCCGA-GAGCGCGAGTCGGCAACGGGATTCGAGTCCAGGTCC----------ACACTGGGATCCGAGCTCCGAGTACGTGAAGGGGCGGGCCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTTGGACCCGAAGGGGAACAGACGGGCTCCGGAAAGGAGGCGGGGTCTGGAGCTCGCCGTGAGGAATGAGGCGGGGTCTCCC-TTCGGGTTCCTTCGGGCACAATCGGGAGCTTGAgtt-ctccggaagcggggccacaaacttcggctcacttcggcaatagtcga--------------gaacgga---------------gagctgaggccagtgtgggcggagccacatgtttcggctttcttcggaggtagtCGAGTCCTTAGGGTCACTGTTCCGATGTGGGCGGGGCCACAGACT-CGGCCGGATGTGGGTGGGGCCACAAGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
s panTro4.chr19              59097123 512 +  63644993 CGCAGATCAGGCCGGGGAAGAAGCCACGGTCAGGGCCCCGGGCGGGCAGGGAAGAAGCCCCGGAGCAGAAGCCGA-GAGCGCGAGTCGGCAACGGGATTCGAGTCCAGGTCC----------ACACTGGGATCCGAGCTCCGAGTACGTGAAGGGGCGGGCCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTTGGACCCGAAGGGGAACAGACGGGCTCCGGAAAGGAGGCGGGGTTTGGAGCTCGGCGTGAGGAATGAGGCGGGGTCTCCC-TTCGGGTTCCTTCGGGAACAATCGGGAGCTTGAGTTTCCCCGGAGGCGGGGCCACAAACTTCGGCTCACTTCGGCAATAGTCGA--------------GAACGGA---------------GAGCTGAGGCCACTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCGAGTCCTTAGGGTCACTGTTCCGATGTGGGCGGGGCCACAGACT-CGGCCGGATGTGGGTGGGGCCACAAGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55974580 511 +  60714840 CGCGGATCAGGCCGGCGAAGAGGCCACGGTCAGGGCCCCGGGCGGGCAGGGAAGAAGCCCCGGAGCAGGAGCCAA-GAGCGCGAGTCGGCAACGGGACTCGAGTCCAGGTCC----------ACACTGGGATCCGAGCTCCGAGTACGTGAAGGGGCAGGCCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTCGGACCCGAAGGGGAACAGACGGGATCCGGAAAGGAGGCGGGGTTTGGAGCTCGGCGGGAGGAATGAGGCGGAGTCTCCC-TTCGGGTTCCTTCTGGCACAATCGAGAGCTTGAATT-CACTGGAGGCGGGGCCACAAACTTCGGCTCACTTCGGAGATAGTCGA--------------GAACGGA---------------GAGCTGGGGCCAGTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCTAGTCCTTAGGGTCACTGTTCCGATGTGGGCGGGGCCACAGACT-CGGCCGGATGTGGGTGGGGCCACAAGCTTCGGTTTACTTCGTAGACAGTTGGGTACAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102744117 511 - 106955855 CGCGGATCAGGCCCGGGAAGAGGTCACGGTCAGGGTCCCGGGCGGGCAGGGAAGGAGCCCCGGAGCAGGCGCCGA-GAGCGCGAATCGGCAACGGGACTTGAGTCCAGGTCC----------ACACTGTGATCCGAGCTCCGAGTACGTGAAGGGGCGGGCCTTCGGGCTCGGAACAGGGAGGAGCCAAAAGCTTTGGACCCGAAGGGGAACAGACGGGATCCGGAAAGGAGGCGGGGTCTGGAGCTCGGCGTGAGGAATGAGGCGGGGTCTCCT-TTCGGGTTCCTTCGGGCACAATCGGGAGCTTGAGTT-CACTGGAGGCGGGGCCACAAACTTCGGCTCACTTCGGAGATAGTCGA--------------GAACGGA---------------AAGCTGGGGCCAGTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCGAGTCCTTAGGGTCACTGTTCCGATGTGGGCGGGGCCACAGACT-CGGCCGGATGTCGGTGGGGCCACAAGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60033851 511 +  64156825 CGCGGATCAGGGCGGGGATGAGGCCACGGTCAGGGTCCCGGGCGGGCAGGGAAGGAGCCCCAGAGCAGGCGACCG-GAGCGCGAGTCGACAACGGGACTCGAGTCCAGGTCC----------ACACCGGGCTCCGAGCCCCGAGAACGTGAAGGGGCAGGGCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTTGGACCCGAAGGGAGACAGACAGGATCCGGAAAGGAGGCGGGGTCTGGAGCTCGGCGTGAGGGATGAGGCGCGGTCTCCG-TTCGGGTTCCTTCGGGCACAATCGGGAGCTTGAGTT-CACGGGAGGCGGGGCCACAAACTTCGGCTCACTTCGGAGATAGTCGA--------------GAACGGA---------------GCGCTGGGGCTACTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCGAGTCCTTAGTGTCACTGTTCCGATGTGGGCGGGACCACAGACT-CGGCCGGATGTGGGTGGGGCCATATGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
i rheMac3.chr19             M 287 C 0
s macFas5.chr19              55059466 511 +  59248254 CGCGGATCGGGGCGGGGATGAGGCCACGGTCAGGGTCCCGGGCGGGCAGGGAAGGAGCCCCAGAGCAGGCGACTG-GAGCGCGAGTCGACAACGGGACTCGAGTCCAGGTCC----------ACACCGGGCTCCGAGCCCCGAGAACGTGAAGGGGCAGGGCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTTGGACCCGAAGGGAGACAGACGGGATCCGGAAAGGAGGCGGGGTCTGGAGCTCGGCGTGAGGGATGAGGCGCGGTCTCCG-TTCGGGTTCCTTCGGGCACAATCGGGAGCTTGAGTT-CACGGGAGGCGGGGCCACAAACTTCGGCTCACTTCGGAGATAGTCGA--------------GAACGGA---------------GCGCTGGGGCTACTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCGAGTCCTTAGTGTCACTGTTCCGATGTGGGCGGGACCACAGACT-CGGCCGGATGTGGGTGGGGCCATATGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47161954 511 +  51301725 cgcgGATCGGGGCGGGGATGAGGCCACGGTCAGGGTCCCGGGCGGGCAGGGAAGGAGCCCCAGAGCAGGCGACCG-GAGCGCGAGTCGACAACGGGACTCGAGTCCAGGTCC----------ACACCGGGCTCCGAGCCCAGAGAACGTGAAGGGGCGGGGCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTTGGACCCGAAGGGAGACAGACGGGATCCGGAAAGGAGGCGGGGTCTGGAGCTCGGCGTGAGGGATGAGGATCGGTCTCCG-TTCGGGTTCCTTCGGGCACAATCGGGAGCTTGAGTT-CACGGGAGGCGGGGCCACAAACTTCGGCTCACTTCGGAGATAGTCGA--------------GAACGGA---------------GCGCTGGAGCTACTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCGAGTCCTTAGTGTCACTGTTCCGATGTGGGCGGGACCACAGACT-CGGccggatgtgggtggggccataAGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46867305 511 +  50890351 CGCGGATCGGGGCGGGGATGAGGCCACGGTCAGGGTCCCGGGCGGGCAGGGAAGGAACCCCAGAACAGGCGACCG-GAGCGCGAGTCGACAACGGGACTCGAGTCCAGGTCC----------ACACCGGGCTCCGAGCCCCGAGTACGTGAAGGGGCGGGGCTTCGGGCTCGGAACAAGGAGGAGCCAAAAGCTTTGGACCCGAAGGGAAACAGACGGGATCCGGAAAGGAGGCGGGGTCTGGAGCTCGGCGTGAGGGATGAGGTGCGGTCTCCG-TTCGGGTTCCTTCGGGCACAATCGGGAGCTTGAGTT-CACGGGAGGCGGGGCCAGAAACTTCGGCTCACTTCGGAGATAGTCGA--------------GAACGGA---------------GCGCTGGGGCTACTGTGGGCGGGGCCACATGTTTCGGCTTTCTTCGGAGATAGTCGAGTCCTTAGTGTCACTGTTCCGATGTGGGCGGGAACACAGACT-CGGCCGGATGTGGGTGGGGCCATAAGCTTCGGTTTACTTCGTAGATAGTTGGGTACAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45449840 506 +  49145316 CGCGGATCGGGCCGGGGATGAGGCCACGGTCAGGGCCCCGGGCGGGCAGGGAAGAAGCCCGGGAGCGGGCGCCAG-GAGCGCGAGCCAGCAGCGGCACTCGAGTCCAGGTCT----------GCAATGGGCTCCGAGTTCCGAGTACGTGAAGGGGCGGGGCCTCGGGCTCGGAACAAGGAGGAGCCAAAAGCCTTGGGCCCGGGGAGGATAAGACAGGATCCGGAAAAGAGGCGGGGTCTGGAGCCTAGCGTGAGAGATGAGGCGGGGTCTCCG-TTCGGGTTCCTTCGGGCACAGTCGGGAGCTTGAGTT-CACTGGAGGTGGGGCCACAAACTTCCGCTCACTTCGGAGATAGTCGA--------------GAACCGA---------------GTGCTGGGGCCGGCGTGGGCGGGGCCACACGTTTCGGCTTTCTTCGGAGATAGTCGAGTC---AGGGTCGCTGTTCTGATGTGGGCGGGACCAC--ACT-CGGCCGGATGTGGGTGGGGCTACAAGTTTCGGTTTACTTCGTAGATAGTTGGGTATAA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3692862 508 + 145441459 CGCGGTCCAGGCCCCGAGAGCCGCGGCTGTACGAGTTACAGCACCGCAAGAAAGGTACCC--------------A-GAACACCAGTCTGCCGCAAGATGCCTGTCGCGATCTTTCTAGGAGGTCCCCGGGCAAAGAGCTGCCAGTACGTGAAGGGGCGGGGTTTCGGG-TCAGA--GAGGCGGGGCCAAGATCTTCGAGTCC----------CGTTGAGACTTG---AGGAGGAGGGACCTGGAGCTCA-----------GAGACAGACTTTCAGCTTCGGATTCCTTCGGGCACACTCGGTCATTCAAGCC-CTCGGCATGGAGTGCCAC-AGCTTCGGCTTACTTCGGGGATAGCCGAATTCCAAAGTCACGGCTCGGAATTAGATGCGTTTACAAACTCGGCCGGATGTAGGCGGGACCACACACTTCGGCTTGATTCGGAAATAATCGGGTCCA-AAAGTCGTTGTGTAGTGTTAGGCGGGCTCAAGAACG-CAGAACGAAGTAGGCGGGACCGCATGCTTCGGCTTACTTCGGAGATAGTCGGAATCAG
i mm10.chr7                 C 0 I 244
s canFam3.chr1               19650706 293 - 122678785 -------------------------------------CGGGCCAGGCAGGGAAG-CGTCCTGCTCCGCGCGCCCGCGAGCACCCCTCGGCCGCTGCA-------CCTGGACC----------TCAC-GGCAGCCGAGCCCAGAGCACGTAAAGAGGCGAGGCCTCGG---------------------------------------------------------------------------------------AGGAAGGAGGCGGGGCCTCCGCTTCGGGTTCCCTCGGGCAGAATCGGCGGC---AGCT----TGGAGGCGGGGCCACAGGCTTCGGTGTACTTCG---------GA--------------------A---------------------------------------------------------------------------------GTCTCTGTTCGGATGTAGGCGGGGCCAAGAGCTGCGGGCGGACGTAGGCGGGGTCATA-GCGTCGGTTTTTTCCGGAGATGGTTGGGTACCA
i canFam3.chr1              C 0 C 0

a score=608434.000000
s hg38.chr19_GL949751v2_alt    164940 200 +   1002683 GTGACGC----TAGGATGATAGGCGGAGTCAACAGGTTCGCCAGATACCCATGAGTATTTACA------------AGGGGGCGGGGCGA--AAGCGACTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCGGCGTGCGCCTACGGGACCGGGCCAGGGTGACGATCCTCAAGTTCCCAAGTAGAGGAGAGGAAGCGGCAGAGGGAGGTGCGCTCAGTGG
s panTro4.chr19              59097635 200 +  63644993 GTGTCGC----TAGGGTGATAGGCGGAGTCAACAGGTTCGCCAGATACCGATGAGTATTTACA------------AGGGGGCGGGGCGA--AAGCGACTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCTGCGTGAGCCTACGGGACCGGGCCAGGGTGAAGATCCTCAAGTTCCCAAGTAGAGGAGAGGAAGCGGCAGAGGGAGGTGCGCTCAGTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55975091 200 +  60714840 GTGACGC----TAGGATGATAGACGGAGTCAACAGGATCGCCAGATACCGATGAGTATTTACA------------AGGGGGCGGGGCGG--AAGCGACTTGCCCTCAAAGGGGGGGAACCCCGAGGGCCGGCGTGTGCCTACGGGATCGGGCCAGGGTGACGATCCTCAAGTTCCCAAGTTGAAGAGAGGAAGCGGCAGAGGGAGGTGCGCTCAGTGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102744628 200 - 106955855 GCGACGC----TGGGGTGATAGGCGGAGTCAACAGGTTCGCCAGAGACCGATGAGTATTTACA------------AGGGGGCGGGGCGA--AAGCGACTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCGGCGTGCGTCTACGGGACCCGGCCAGGGTGAGGATCCTTAGGTTCCCAAGTTGAGGAGAGGAAGCGGCAGAGAGAGGTGCGCTTAGTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60034362 200 +  64156825 GGGACGC----TAGGATGATAGGCGGAGTCAACAGGTTCGCGAGATGCTGATAAGGATTTACA------------AGGGGGCGGGGCGA--AAGCGGCTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCGGCGTGCGCCTAGGGCACGGGGCCAGGGTGACGAGCCTCAAGTTCCCAAGCTGAGGAGAGGAAGCGGCAGAGGGAGGTGCGCTCGGTGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55059977 200 +  59248254 GGGACGC----TAGGATGATAGGCGGAGTCAACAGGTTCGCGAGATGCTGATAAGGATTTACA------------AGGGGGCGGGGCGA--AAGCGGCTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCGGCGTGCGCCTAGGGCACGGGGCCAGGGTGACGAGCCTCAAGTTCCCAAGCTGAGGAGAGGAAGCGGCAGAGGGAGGTGCGCTCGGTGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47162465 200 +  51301725 GGGACGC----TAGGATGATAGGCGGAGTCAACAGGTTCGCCAGATACCGATGAGGATTTACA------------AGGGGGCGGGGCGA--AAGCGGCTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCGGCGTGCGCCTAGGGGACGGGGCCAGGGTGACGAGCCTCAAGTTCCCAAGCTGAGGAGAGGAAGCGGCAGAGGGAGGTGCGCTCGGTGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46867816 200 +  50890351 GGGACGC----TAGGATGATAGGCGGAGTCAACAGGTTCGCCAGATACCGATGAGGATTTACA------------AGGGGGCGGGGCGA--AAGCGGCTTGCCCTCAAAGGGGCGGAACCCCGAGGGCCGGCGTGCGCCTAGGGGACGGGGCCAGGGTGACGAGCCTCAAGTTCCCAAGCTGAGGAGAGGAAGCGGCAGAGGGAGGTGCGCTCGGTGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45450346 189 +  49145316 GTGACGC----TAGGATGATAGGCGGAGTCAACAGGTTCGGCAGATACGGAAGAATATTTACA------------AAGTGGAGGGGCGA--AAGCGACTTGCCCTCAAAGGGGCGGAACCCCGGAGATCGGCGTGCGCGTAGGGGGCGGGGTCAGGGAGACGATCCTCAAATTCCGGAGT-----------AGCGGCAGAGGGAGGTGCGCTCGATGT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19650999 206 - 122678785 GTGGCTCAGATTAGGA-GATAGGCGGAGTCTGTTTTTTCCTGAG-----GAGGCGGGGCCACAGACAGGGCTCGGAGGGGGCGGGGCCAACAGGAGCCCAGCCC---GAGGGGCGG-CCCCCGTTGACC--CGTCAGCCGCGGGGGCGGGGCCAGGGTAATTAGCCTCCCACACGCGAGAGGCAGAACCGTAGAGGCGGAGGGAGGTTCGCTTCGCGG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3693370 244 + 145441459 I

a score=1685709.000000
s hg38.chr19_GL949751v2_alt    165140 496 +   1002683 -GGCGGAGCCAAGG---TGGCCCCCGCGG--------GAGGAGGGCGGGGCTTCGGTCCTGCGAGGGGCGGGACCTGAC-TTCCCGCGGCGCTGATGGGGCGGGATGACGAAGTTGACG-A-GGGTGTCGGCATGAGG------GGGTGGAGCAAGGAGCGCGTG--GCGCGGTGCGCAGTGGGTGGCTCCACCTCGACTGCGAATTACTGTT---TATGAGGTGACTCGCTGGTTCTATCGGTGGACAGTGGGACATTCTGAAGGGAGGCAAGGAGGCGGACTGAGCGCTCCCAATTGGGGTGAGCCCGCCCGAGCGGAGAGTGGACGGCGGGTGTCCAGGGGGCGGGGCTTTCGGCTGTGGGGTTCGGTCG-TAGGGCGGGAACTCCCCAACTGGGGTGCGCTGGCGCTCGGAGGGGGCGGGGCCACAGGCCGCGAGGCTGCCGG-GAGCCGATGACGCCCGAACGCCGAACCTATTGCGTCCGGGAGGAGGCGGGGCTACGGATTCGGCCGAGCCGAGAAC
s panTro4.chr19              59097835 496 +  63644993 -GGCGGAGCCAAGG---TGGCCCCCGCGG--------GAGGAGGGCGGGGCTTCGGTCCTGCGAGGGGCGGGACCTGAC-TTCCCGCGGCGCTGATGGGGCGGGATGACGAAGTTGACG-A-GGGTGTCGGCATGAGG------GGGTGGAGCAAGGAGCGCGTG--GCGCGGTGCGTAGTGGGTGGCTCCACCTCGACTGCGAATTACTGTT---TATGAGGTGACTTGCTGGTTCTATCGGTGGACAGTGGGACATTCTGAAGGGAGGCAAGGAGGCGGACTGAGCGCTCCCAATTGGGGTGAGCCCGCCCGAGCGGAGAGTGGACGGCGGGTGCCCAGGGGGCGGGGCTTTCGGCTGTGGGGTTCGGTCG-TAGGGCGGGAACTCCCCAACTGGGGTGCGCTGGCGCTCGAAGGGGGCGGGGCCACAGGCTGCGAGGCTGCCGG-GAGCCGATGACGCCCGAACGCCGAACCTATGGCGTCCGGGAGGAGGCGGGGCTGCGGATTCGGCCGAGCCGAGAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55975291 497 +  60714840 -GGCGGGGCCAAGG---TGGCCCCCGCGG--------GAGGAGGGCGGGGCTTCGGTCCTGCGAGGGGCGGGACCTGAC-TTCCCGCGGCGCTGATGGGGCGGGATGACGAAGTTGACG-A-GGGTGTCAGCATGAGG------GGGTGGAGGAAGGAGCGCGTG--GCGCGGTGCGTAGTGGGTGGCTCCGCCTCGACTGCGAATTACTGTT---TATGAGGTGACTCGCTGGTTGTATCGGTGGACAGTGGGACTTTCTGTATGGAGGCAAGGAGGCGGACTGACCGCTCTCAATTGGGGTGAGCCCGCCCGATCTGATAGTGGACCGCGGGTGCCTAGGGGGCGGGGCTTTCGGCTGTGGGGTTCGGTCG-TCGGGCGGGAACTCCCCAACTGGGGTGCGCTGGCGCTCGGAGGGGGCGGGGCCACAGGCTGCGAGACTGCTGGTGAGCCGATGACGCCCGAACGCCGAACCTATTGCGTCCGGGAGGAGGCGGGGCTACGGACTCGGCCGAGCCGAGAAC
i ponAbe2.chr19             C 0 M 678
s nomLeu3.chr10             102744828 492 - 106955855 -GGCGGGGCCAAGG---TGGCCCCCGCG-----------GGAGGGCGGGGCTTCGGTCCTGCGAGGGGCGGGACCTGAC-TTCCCGCGTCGCTGATGGGGCTGGATGACGAAGTTGACG-A-GGGTGTCGGCATGAGG------GGGTGGAGGAAGGAGCGCGTG--GTGCGGTGCATAGTGGGTGGCTCCGCCTCGACTGCGAATTACTGTT---TATGAGGTGACTCGCTGGTTCTATCGGTGGACAGTGGGACATTCTGAAGGAAGGCAAGGAGGCGGACTGAGCGCTCCCAATTGGGGTGAGCCCGCCGGGGCGGAGAGTGGACGGCGGGTGCCCAGGGGGTGGGGCTTTC-GCTGTGGGGTTCAGTCG-TCGGGCGGGAACTCCCCAACTGGGGTGCGCTGGCGCTCAGAGGGGGCGGGGCAACAGGCTGCGAGACTGCTGG-GAGCCGATGACGCCCGAACGCCGAACCTAGTGCGTCCGGGAGGAGGCGGGGCTACGGATTCGGCCGAGCCGAGAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60034562 496 +  64156825 -GGCGGGGCCAAGG---TGGTCACCGCGG--------GAGGAGGGCGGGGCTTCGAGCCTGCGAGGGGCGGGTCCTGAC-TCCCCCCGGCGCTGACGGGGCGGGATGACGAAGTTGACG-A-GAGGGTCGGCAAGAGC------GGGTGGAGGAAGGAGCGCGTG--GCGCGGTGCGTAGTGGGTGGCTCCGCCTCGACTGCGAGTTAGTGTT---TATGAGGTGACTCGCTGGTTCTGTCGGTGGACCGTGGGACATTCTGAAGGGAAGCAAGGAGGCGGACTGAGCGCTCCCAAGTGGGGTGAGCCCGCCCGAGCGGAGAGCGGACGGCGGGTGCCCAGGGGGCGGGGCTTTCGGCTATGGGGTTCGGTCG-TCGGGCGGGAACTCCCCATCGGGGGTGCGCTGGCGCTCGGAGGGGGCGGGGCCACAGCCTGCGGGACTGCCGG-GAGCCGATGACGCCCGAACGCCGAACCTCAGGCGTCCGGCAGGAGGCGGGGCTACGGATTCGGCCGAGCCGAGAAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55060177 496 +  59248254 -GGCGGGGCCAAGG---TGGTCACCGCGG--------GAGGAGGGCGGGGCTTCGAGCCTGCGAGGGGCGGGTCCTGAC-TCCCCCCGGCGCTGACGGGGCGGGATGACGAAGTTGACG-A-GAGGGTCGGCAAGAGC------GGGTGGAGGAAGGAGCGCGTG--GCGCGGTGCGTAGTGGGTGGCTCCGCCTCGACTGCGAGTTAGTGTT---TATGAGGTGACTCGCTGGTTCTGTCGGTGGACCGTGGGACATTCTGAAGGGAAGCAAGGAGGCGGACTGAGCGCTCCCAAGTGGGGTGAGCCCGCCCGAGCGGAGAGCGGACGGCGGGTGCCCAGGGGGCGGGGCTTTCGGCTATGGGGTTCGGTCG-TCGGGCGGGAACTCCCCATCGGGGGTGCGCTGGCGCTCGGAGGGGGCGGGGCCACAGCCTGCGGGACTGCCGG-GAGCCGATGACGCCCGAACGCCGAACCTCAGGCGTCCGGCAGGAGGCGGGGCTACGGATTCGGCCGAGCCGAGAAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47162665 496 +  51301725 -GGCGGGGCCAAGG---TGGTCACCGCGG--------GAGGAGGGCGGGGCTTCGAGCCCGCGAGGGGCGGGTCCTGAC-TCCCCCCGGCGCTGACGGGGCGGGATGACGAAGTTGACG-A-GAGGGTAGGCAAGAGC------GGGTGGAGGAAGGAGCGCGTG--GCGCGGTGCGTAGTGGGTGGCTCCGCCTCGACTGCGAGTTAGTGTT---TATGAGGTGACTCGCTGGTTCTGTCGGTGGACCGTGGGACATTCTGAAGGGAAGCAAGGAGGCGGACTGAGCGCTCCCAAGTGGGGTGAGCCCGCCCGAGCGGAGAGTGGACGGCGGGTGCCCAGGGGGCGGGGCTTTCGGCTATGGGGTTCGGTCG-TCAGGCGGGAACTCCCCATCGGGGGTGCGCTGGCGCTCGGAGGGGGCGGGGCCACAGCCTGCGGGGCTGCCGG-GAGCCGATGACGCCCGAACGCCGAACCTCAGGCGTCCGGCAGGAGGCGGGGCTACGGATTCGGCCGAGCCGAGAAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46868016 496 +  50890351 -GGCGGGGCCAAGG---TGGTCACCGCGG--------GGGGAGGGCGGGGCTTCGAGCCTGCGAGGGGCGGGTCCTGAC-TTCCCCCGGCGCTGACGGGGCGGGGTGACGAAGTTGACG-C-GAGGGTCGGCCAGAGC------GGGTGGAGGAAGGAGCGCGTG--GCGCGGTGCGTAGTGGGTGGCTCCGCCTCGACTGCGAGTTAGTGTT---TATGAGGTGACTCGCTGGTTCTGTCGGTGGACCGTGGGACATTGTGAAGGGAAGCAAGGAGGCGGACTGAGCGCTCCCAAGTGGGGTGAGCCCGCCCGAGCGGAGAGTGGACGGCGGGTGCCCAAGGGGCGGGGCTTTCGGCTATGGGGTTCGGTCG-TCGGGCGGGAACTCCCCGTCGGGGGTGCGCTGGCGCTCGGAGGGGGCGGGGCCACAGCCTGCGGGACTGCTGG-GAGCCGATGACGCCCGAACGCCGAACCTCAGGCGTCCGGGAGGAGGCGGGGCTACGGATTCGGCCGAGCCGAGAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45450535 505 +  49145316 -GGGGGTGCCAAGG---TGGCCACCGCGG--------GAAGAAGGCGGGGCTCCAGGCCTGTGAGGGGAGGGTCCTGAC-TTCCCGCGGCGCCGAGGCGGCGGAATGACGAAATTGACG-CTGGGGGTCGACATGGGGAGGGGAGGGTGGAGGAAGCAGAGCGTGGCGCGCGGTGCGTAGTGGGTGGCTCCGCCTTGACTGCGAGTTGGTGGTA--TCTGAGGTGACTCGGTGATTCTATCCGTGGACCGTGGGACATTCTGAAGGGAAGCAAGGAAGCGGACTGAGCGCTCCTAAGTGGGGTGAGCCTGCCCGAGCGGAGAGTGGATGGCGGGTGGCCAGGGGGCGGGGCTTTCGGCTACGGGGTTCGGTCG-TGGGGCGGGAACTCCCCAACTGGGGTGCGCTGGCTCTTGGAGTGGGAGGGGCCACAGGCTGCGGGACTGCCAG-AAGCCGATGACG-CAGAACGCCGAACCTTGTGCGTCCGGGAGTGGGCGGGGCTACGTAGTCGGCCGAGCCGAGAAC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3693614 384 + 145441459 -GGCGAGGCCAGAGCAATGACCCTCAAGGTCCCATTTGTGCAGACCGGAGT-----GGCAGTGAGGGCT--TTCTTGGCTTTTCCGCTTTGCTGACCTGACGGGATGACG--------G-A-----------------------GG---------------------ACGCGCTACGTAG-GGCCAGCTCCGCCTTAGCCGAGAGTTGGTGTTGGCTAGGGGTTGACTTATTGCCTCTGCCTGAGGACAGTACGACAGATTGAAAGGGAGCCACGACGCACACTGCAC----------------------CTCGAGTG------------------------------------CGACTGT-GGATTCAATCG-T-AATTGTGAACTCCTTAAATTGGGTAGG----------AAGTGGGCGGGGCCACAG-CTGGAAGAACGATGG-GATCTGGCTAGGGTCGAATGCTGAACCTTTTGCAACTTAGAGGGGGTGG-----CTGATTCTACTGAGCCGAGATC
i mm10.chr7                 I 244 I 32
s canFam3.chr1               19651205 467 - 122678785 GGGCGGGGCCAGGT---TGTTCCCCTTCG--------CGGGAAGGCGGGGCTACGGTGCCGCTGGGGCGGATCCCAGAC-TTCCCGCTCGGCTGAGGTGGCGGCGTGACGAGATTGACGCA-GGGGGTCGGGATGGGGAG----GGGTGGAGGAAGCTGCGCGTG--GCGCGCTACGTAGGGGGCGGCTCCGCCGGGGCTGCGAGCGGGTGTT---TACGAGGCGACTAACTCGTTCTATCGGAGGACGGTACCGCATTCTGAGGGGAA------------------CGCTCACGAG-GAGGTGAGCCCGCCCGGGCAGCGAACGGACGGCGGGTGCCCCGGGGGAGGGACCTCCGGCTGC-GGGTTCGCTCACTAGGGCGGGGACTCTCCCGCCGGGA-GCGCCTGCGGCCGGAGCGGGCGGGGC--CCGGCTGCTGGTC-GACGG-GAGCCGAGGGAGCCCGAACGCCG--------GCCTTCGGGAGGGGGCGGGGCTGCGAGTTCGGCCGACCCGGGA--
i canFam3.chr1              C 0 C 0

a score=509117.000000
s hg38.chr19_GL949751v2_alt    165636 210 +   1002683 ACCCGAACGTCAAATTGCTGGCGTTCGGGAAGGGGGCGGGGCTGCGGATTCGGTGGAGCCGAGGACGCCCGAACGCCGAACTTCCTGTGCTCGGGAGGGGGCAGGGTTTTGTACTGTGGGAGTCTGAGAGCGAGGAGGTCCGAAAGCCGAATCACAGTCGTTCGGAAAGAGGAGGAGCGAAGGCTCGAGCGTCCGGAAGAGGGTGTGGCC
s panTro4.chr19              59098331 210 +  63644993 ACCCGAACGTCAAATTGCTGGCGTTCGAAAAGGGGGCGGGGCTGCGGATTCGGTGGAGCCGAGGACGCCCGAATGCCGAACTTCCTGTGCTCGGGAGGGGGCAGGGTTTTGTACTGTGGGAGTCTGAGAGCGAGGAGGTCCGAAAGCCGAATCACAGTCGTTCGGAAAGAGGAGGAGCGAAGGCCCGAGCGTCCGGAAGAGGGTGTGGCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102745320 210 - 106955855 TCCCGAATGTCAAATTGCTCACGTTCGAGAAGGGGGCGGGGCTGCGGATTCGGTGAAGCCGAGGACGCCCGAACGCCGAACTTCCTGTGCTCGGGAGGGGGCAGGGTTTTGTACTGTGGGAGTCTGAGAGCGAGTAGGCCCGAAAGCCGAATCACAGTCGTTCGGAAAGAGGAGGACCGAAGGCCCGAGCGTCCCGAAGAGGGTGTGGCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60035058 210 +  64156825 ACCCGAACGCCAAATTGCTCGCGTTCGAGAAGGGGGCGGGGCTGCGGATTCGGTGAAGCCAAGGACGCCCGACCGCCGCAATTCTTGTGCTCTGAAGGGGGCAGGGTTTTGTACTGTTGGAGTCTGAGCGCTTGTAGACCCGAAAGCCGAATCACAGTGGTTCGGAAAGAGGAGGAGCCAAGGCCGGAGCGTCCCGAAGTGGGTGTGGCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55060673 210 +  59248254 ACCCGAACGCCAAATTGCTCGCGTTCGAGAAGGGGGCGGGGCTGCGGATTCGGTGAAGCCAAGGACGCCCGACCGCCGCAATTCTTGTGCTCTGAAGGGGGCAGGGTTTTGTACTGTTGGAGTCTGAGCGCTTGTAGACCCGAAAGCCGAATCACAGTGGTTCGGAAAGAGGAGGAGCCAAGGCCGGAGCGTCCCGAAGTGGGTGTGGCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47163161 209 +  51301725 ACCCGAACGCCAAATTGCTCGCGTTCGAGAAGGGGGCGGGGCTGCGGATTCGGTGAAGCCAAGGACGCCCGATCGCCGCACTTCTTGTTCGA-GAAGGGGGCAGGGTTTTGTGCTGTGGGAGTCTGAGAGCTTGTAGGCCCGAAAGCCGAATCACAGTGGTTCGGAAAGAGGAGGAGCCAAGGCCGGAGCGTCCCGAAGTGGGTGTGGCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46868512 210 +  50890351 ACCCGAACGCCAAATTGCTCGCGTTCGAGAAGGGAGCGGGGCTGCGGATTCGGTGAAGCCAAGGACGCCCGACCGCCGCACTTCTTGTGCTCGGAAGGGGGCAGGGTTTTGTACTGTGGGGGTCTGAGAGCTTGTAGGCCGGAAAGCAGAATCACAGTGGTTCGGAAAGAGGAGGAGCCAAGGCCGGAGCGTCCCGAAGTGGGTGTGGCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45451040 210 +  49145316 ACCCGAACGCCAAATGGCTCACGTTCGAGAAGGGGGCGGGGCGGTGTATTCGGTGGAGTCGAGGACTCCCGAACGCCGAACCTCCCGCTCCAAGGAGGGAGCAGGGTTTCGTACTGTGGGAGTCTGAGAGCGAGTAGGCCCGACAGCCGAATCACAGTGGTTCGGAAACAGGAGGAGCTAAGGCCGGAGCGTCCCGAAGAGGGTGTGGCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694030 200 + 145441459 TTCCGAAGGCTGAAACGCTTGCGTTCGGGTAG---GCAGGACTCCCGATTGAGCCGAATTTAGGATGCTGGAACATCGAACAGCTGGCGC--AAGACAGGACTGGGTTT----CTTTTAAAGTCCGACTCAGAATAGGCGGGAAAGGCGAATCTGGGCACTTC-GAAAGGGGAGGGGCTGGGCTCCAAGTATTTAGAAGAGGGTGTGGCT
i mm10.chr7                 I 32 C 0
s canFam3.chr1               19651672 115 - 122678785 --------------------------------GGGGCGGGGCT------------------------------------------TGTGCT---------GTGGGGTCCCACCCCGCGAGAG------------GAGGGCCTGAGGCCGCGCCTCGTCGGTTCGGAAAGGGGAGGGGCCGAGTTCCGAGGCGCTGGAAGGGGGCGTGGCC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55975788 678 +  60714840 M

a score=262305.000000
s hg38.chr19_GL949751v2_alt    165846 113 +   1002683 TCGGCGG--TGCCTTAGCCTCCAGAGCTTCTGACCGCTGACGGGAACACCCGAAGGGGGACGCCCACTTTGC-AAGAGGGTGGTGCCAAAATGGACCTTTGTAAGGGGGCGTGTCG
s panTro4.chr19              59098541 113 +  63644993 TCGGCGG--TGCCTTAGCCTCCAGAGCTTCTGACCGCTGACGGGAACACCCGAAGGGTGACGCCCACTTTGC-AAGAGGGTGGTGCCAAAATGGTCCTTTGTAAGGGGGCGTGTCG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102745530 113 - 106955855 TCGGCGG--TGCCTTAGCCTCGAGAGCTTCTGACCCCTGACGGGAACACCCGAAGGGGGACGCCCACTTTGC-AAGAGAGTGGTGCCAAAATGCACCTTTGTAAGGGGGCGTGTCG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60035268 113 +  64156825 TTGGCAG--TGCCTTAGCCTCGAGAGCTTCTGACCCCTGAGGGGGGCACCCGAAGGGGGACGCCCACTTTGC-AAGAGGGTGGTGCCAAAATGGACCTTTGTAAGGGGGCGTGTCG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55060883 113 +  59248254 TTGGCAG--TGCCTTAGCCTCGAGAGCTTCTGACCCCTGAGGGGGGCACCCGAAGGGGGACGCCCACTTTGC-AAGAGGGTGGTGCCAAAATGGACCTTTGTAAGGGGGCGTGTCG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47163370 113 +  51301725 TTGGCAG--TGCCTTAGCCTCGAGAGCTTCTGACCCCTGATGGAAGCACCCGAAGGGGGACGCCCACTTTGC-AAGAGGGTGGTGCCAAAATGGACCTTTGTAAGGGGGCGTGTCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46868722 113 +  50890351 TTGGCAG--TGCCTTAGCCTCGAGAGCTTCTGACCCCTGATGGAAGCACCCGAAGGGGGACGCCCACTTTGC-AAGAGGGTGGTGCCAAAATGGACTTTTGTAAGGGGGCGTGTCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45451250  99 +  49145316 TCGGCGG--TGCTTTAGCTTCGAGAGCTTTTGATCCCCGACGGGA--------------ACGCCCACTTTGC-AAGAGGGTGGAGCCAAAATGGACCTTTATAAGGGGGTGATTCG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694230 100 + 145441459 TGAGCAAACCACCCTACATT---GAGGTTCTGAGATTTGACGGACGCATAAGAAG----ACACCCACTTTGCAAAAAGGGCGGTGC--------ACCACTATGGCGGGAGGTCTC-
i mm10.chr7                 C 0 C 0
e canFam3.chr1               19651787   0 - 122678785 C
e ponAbe2.chr19              55975788 678 +  60714840 M

a score=279580.000000
s hg38.chr19_GL949751v2_alt    165959 140 +   1002683 CCGCGCTTGCGGAGGTTTGTTTTTCACGCTCCAAGGCGCAATGGTAGG-TACGGCAGTGCGGGCACAGAGCGGGTGCCGACCGCAGGGTCACAAGGGTAGAGCGGGACCCTGGGGGCTTGGCGAGGGGCGAGGGTCGGGGG
s panTro4.chr19              59098654 140 +  63644993 CCGCGCTTGCGGAGGTTTGTTTTTCACACTCCAAGGCGCAATGGTAGG-TACGGCAGTGCGGGCACAGAGCGGGTGCCGACCGCAGGGTCACAAGGGTAGAGCGAGGTCCCGGGGGCTTGGCGAGGGGCGAGGGTCGGGGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102745643 139 - 106955855 CCGCGCTTGCGGAGGTTTGTTTTTCAGACTCCAAGGCGCAATGGTAGG--ACGGCAGTGTGGGCACAGAGCGGGTGCCGACCGCAGGGACACAAGGGTAGAGCGGGGCCCCGGGGACTTGGCAAGGGGCGAGGGCCGGGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60035381 133 +  64156825 CCGCGCTTGGGGAGGTTTGTTTTTGAGACTCCAAGGCGCAATGGTAGG-TACGGCAGTGTGGGCACAAAGCGGGTGCCGACTGCAGGGTCACAAGGGTAGAGCAGGGCCCCGGGGACGCGGCGAGGGGCGAGGG-------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55060996 133 +  59248254 CCGCGCTTGGGGAGGTTTGTTTTTGAGACTCCAAGGCGCAATGGTAGG-TACGGCAGTGTGGGCACAAAGCGGGTGCCGACTGCAGGGTCACAAGGGTAGAGCAGGGCCccgggggcgcggcgaggggcgaggg-------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47163483 131 +  51301725 CCGCGCTTGGGgaggtttgtttttgagactccAAGGCGCAATGGTAGG-TACGGCAGTGTGGGCACAAAGCGGGTGCCGACTGCAGGGTCACAAGGGTAGAGCAgggccccgggggcgcggcgaggggcgag---------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46868835 140 +  50890351 CCGCGCTTGGGGAGGTTTGTTTTTGAGACTCCAAGGCGCAATGGTAGG-TACGGCAGTGTGGGCACAAAGCGGGTGCCGACTGCAGGGTCACAAGGGTAGAGCAGAGCCCCGGGGGCGCGGCGAGGGGCGAGGGCCGCGGG
i chlSab2.chr6              C 0 I 3
s calJac3.chr22              45451349 106 +  49145316 CCGCGCTTGT---GGTTTCTTTTTGAGACTTGAAGGCGCAATAGCAGG-TAGGGCAGTGTGGGCACAGAGCGGGTGCCGACGGCAGGGTCACAAGGGCTGAGCGGGGCTC-------------------------------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694330  97 + 145441459 ---------------------TCTGAGGGGACGAGAGATGGTGGTACGCTTTGGCAGAGAAGATGGTCACCTGGAGCTGA---------------GGGGGAGCGGAACGGTGGGACCTGGGTGAGGGGCGTGG--------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19651787  86 - 122678785 CCGCGCTAGGGGA------------------------GCAGAGGACCG-----------------------GGACGCGGACTGCAGGGTCCGGAGGGCCGAGCTGGGCCCCAACGTCTCGGCGAGAGGCGGGG--------
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55975788 678 +  60714840 M

a score=-13340.000000
s hg38.chr19_GL949751v2_alt    166099 17 +   1002683 CTTGTCTCCGG-CGTCTC
s panTro4.chr19              59098794  3 +  63644993 TTT---------------
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102745782  3 - 106955855 CTC---------------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60035514 10 +  64156825 ----CTGCCGGTCG----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55061129 10 +  59248254 ----ccgccggtcg----
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45451455  1 +  49145316 ------------C-----
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19651873  4 - 122678785 ----CCTC----------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3694427  0 + 145441459 C
e ponAbe2.chr19              55975788 678 +  60714840 M
e chlSab2.chr6               46868975  3 +  50890351 I
e papAnu2.chr19              47163614  0 +  51301725 C

a score=201140.000000
s hg38.chr19_GL949751v2_alt    166116  84 +   1002683 GTCTCCGGCGGCCGCGAGGCCTGGTGGGATC---GCCCGGGGGCGGGGCCTGGCGCT-------CGGGCCC---------------------------------AGCAGGTGGTGAACGGCGGCTGA-
s panTro4.chr19              59098797  84 +  63644993 GTCTCCGGCGGCCGCGAGGCCTGGTGGGATC---GCCCGGGGGCGGGGCCTGGCGCT-------CGGGCCC---------------------------------AGCAGGTGGTGAACGGCGGCTGA-
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102745785  84 - 106955855 GTCTCCGGCGGCCGCGCGGCCTGGTGGGATC---GCCCGGGGGCGGGGCCTGGCGCT-------CGGGCCC---------------------------------AGCAGGTGGTGATTTGCGACTGA-
i nomLeu3.chr10             C 0 M 100
s rheMac3.chr19              60035524  84 +  64156825 GTCTCCGGCGGCCGCGGGGCCTGGCGGGATC---GCCCTGGGGTGGGGCCTGGCGCT-------CCGGCCC---------------------------------AGCAGGTGGTGAACGGCGGCTGA-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55061139  84 +  59248254 gtctccggcggccgcggggcctggcggGATC---GCCCTGGGGTGGGGCCTGGCGCT-------CCGGCCC---------------------------------AGCAGGTGGTGAACGGCGGCTGA-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47163614  75 +  51301725 ---------ggccgcggggcctggcgggatc---gccctggggtggggcctggcgcT-------CCGGCCC---------------------------------AGCAGGTGGTGAACGGCGGCTGA-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46868978  84 +  50890351 GTCTCCAGCGGCCGCGGGGCCTGGCGGGATC---GCCCTGGGGTGGGGCCTGGCGCT-------CCGGCCC---------------------------------AGCAGGTGGTGAACGGCGGCTGA-
i chlSab2.chr6              I 3 C 0
s calJac3.chr22              45451456  84 +  49145316 GTCTCCGGCGGCCGCGGAGCCTGGTGGGATC---GTCCGGGGGCGGGGCCTGGCACT-------TGGGCCC---------------------------------AGCAGGTGGTGAACAGCGGCCGA-
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694427  59 + 145441459 -TCTTAACTGGTC------CCTGGGTAGATCTTGGCTGGGGGGCGGGG---GGGG--------------------------------------------------GCAGGTGGCAACCC---------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19651877 123 - 122678785 GTCTC-GGCGGCACCGGGGCCTGGTGGCATC---GCCCGAgggcggggtccggggcccagggggcgggcccggcggcagggggcggggccTGGTGTGGAAAATTGGCAGGTGGCGAAC-GCGGCCCCG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55975788 678 +  60714840 M

a score=38572.000000
s hg38.chr19_GL949751v2_alt    166200 13 +   1002683 GCGAGGCCCCGCC
s panTro4.chr19              59098881 13 +  63644993 GCGAGGCCCCGCC
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60035608 13 +  64156825 GCGAGGCCCCGCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55061223 13 +  59248254 GCGAGGCCCCGCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47163689 13 +  51301725 GCGAGGCCCCGCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46869062 13 +  50890351 GCGAGGCCCCGCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45451540 13 +  49145316 GCGAGGCCCCGCC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694486 10 + 145441459 ---CAGCCCCGCC
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19652000 13 - 122678785 GCGAGGCTCCACC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55975788 678 +  60714840 M
e nomLeu3.chr10             102745869 100 - 106955855 M

a score=29580.000000
s hg38.chr19_GL949751v2_alt    166213 13 +   1002683 CCCTGAGGCCTAG
s panTro4.chr19              59098894 13 +  63644993 CCCTGAGGCCTAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55976469 13 +  60714840 CCCTAAGGCCTAG
i ponAbe2.chr19             M 678 C 0
s rheMac3.chr19              60035621 13 +  64156825 CCCTGAGGACTAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55061236 13 +  59248254 CCCTGAGGACTAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47163702 13 +  51301725 CCCTGAGACCTAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46869075 13 +  50890351 CCCTGAGAATTAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45451553 13 +  49145316 CTTTGTGGCCTGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694496 13 + 145441459 CCTTGGGGGGTGA
i mm10.chr7                 C 0 I 1
s canFam3.chr1               19652013 12 - 122678785 -CCCCAGGCTCAG
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102745869 100 - 106955855 M

a score=1517394.000000
s hg38.chr19_GL949751v2_alt    166226 369 +   1002683 GGGCGGGGCTT--CGCCGAGACCCCGG-AGGCTTTGGGTGCGCT-GCAGCGGT----------------CTGCGGCGCGCA-GCTGTTTCGGTAACTGCTTTGCCTCCC-GGCTCCCGCAGGAGGATGCTGGTGGTGGAGGTGGCGAACGGCCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTCAGCGCCCCGCGTCCAGACTCTCGGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACTC---------------------------------------
s panTro4.chr19              59098907 369 +  63644993 GGGCGGGGCTT--CGCCGAGACCCCGG-AGGCTTTGGGTGCTCT-GCAGCGGT----------------CCGCGGCGCGCA-GCTGTTTCGGTAACTGCTTTGCCTCCC-GGCTCCCGCAGGAGGATGCTGGTGGTGGAGGTGGCGAACGGCCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTCAGCGCCCCGCGTCCAGACTCTCGGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACTC---------------------------------------
i panTro4.chr19             C 0 I 2
s ponAbe2.chr19              55976482 353 +  60714840 GGGCGGGGCTT--CGCCGAGACCCCGG------------------GCGGCGGT----------------CCGCGGCGCGCA-GCTGTTTCGGTAACTGCTTTGCCTCCT-GGCTCCCGCAGGAGGATGCTGGTGGTGGAGGTGGCGAACGGCCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTCAGCGCCCCGCGCCCAGACCCTCGGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGACTTGAACTC---------------------------------------
i ponAbe2.chr19             C 0 I 194
s nomLeu3.chr10             102745973 369 - 106955855 GGGCGGGGCTT--TGCCGAGACCCCGG-AGGCTTTGGGTGCGCT-GCGGCGGT----------------CCCCGGCGCGCA-GCTGTTTCGGTAACTGCTTTGCCTCCC-GGCTCCCGCAGGAGGATGCTGGTGGTGGAGGTGGCGAACGGCCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTCAGCGCCCCGCGCCCAGACCCTCGGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACTC---------------------------------------
i nomLeu3.chr10             M 100 I 194
s rheMac3.chr19              60035634 369 +  64156825 GGGCGGGTCTT--CGCCAAGACCCCGG-AGGCTTTGGTTGTGCT-CCGGTGGC----------------CCGCGGCGCGCA-GCCGTTTCGGTAACTGCTTTGCTTCCC-GGCTCCCGCAGGAGGATGCTAGTGGTGGAGGTGGCGAACGGTCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGGGATCGGCGCCGTGACTCTGGTTAGCGCCCCGCGCCCAGACCCTCAGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACGT---------------------------------------
i rheMac3.chr19             C 0 I 194
s macFas5.chr19              55061249 369 +  59248254 GGGCGGGTCTT--CGCCAAGACCCCGG-AGGCTTTGGTTGTGCT-CCGGTGGC----------------CCGCGGCGCGCA-GCCGTTTCGGTAACTGCTTTGCTTCCC-GGCTCCCGCAGGAGGATGCTAGTGGTGGAGGTGGCGAACGGTCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTTAGCGCCCCGCGCCCAGACCCTCAGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACGT---------------------------------------
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47163715 369 +  51301725 GGGCGGGTCTT--CGCCAAGACCCCGG-GGGCTTTGCTTGTGCT-CCGGTGGC----------------CCGCGGCGCGCA-GCCGTTTCGGTAACTGCTTTGCTTCCC-GGCTCCCGCAGGAGGATGCTGGTGGTGGAGGTGGCGAACGGTCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTTAGCGCCCCGCGCCCAGACCCTCAGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCggggctcgaactc---------------------------------------
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               46869088 369 +  50890351 GGGCGGGTCTT--CGCCAAGACCCCGG-AGGCTTTGGTTGTGCT-CCGGTGGC----------------CCGCTGCGCGCA-GCCGTTTCGGTAACTCCTTTGCTTCCC-GGCTCCCGCAGGAGGATGCTAGTGGTGGAGGTGGCGAACGGTCGCTCCCTGGTGTGGGGAGCCGAGGCGGTGCAGGCCCTCCGGGAGCGCCTGGGTGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTCTTGGCCGAGATCGGCGCCGTGACTCTGGTTAGCGCCCCGCGCCCAGACCCTCAGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACTC---------------------------------------
i chlSab2.chr6              C 0 I 194
s calJac3.chr22              45451566 366 +  49145316 GGGCGGGGTTT--TGCC-AGATCCC-G-AGGCGCCGAGTGCTCTCCCGGGGGC----------------CCGCG--GCGCA-GCTGTTTCGGTGACCGCTTTGTCTCCC-GGCTCCCGCAGGAGGATGCTGGTTGTGGAGGTGGCGAACGGCCGCTCCCTGGTGTGGGGGGCCGAGGCGGTTCAGGCCCTCCGGGAGCGCCTGGGAGTGGGGGGCCGCACGGTAGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCACGCTTGGGCCTCCCGCTGCTGTTGATGCCCGAAGAGGCGCGGCTCCTGGCAGAGATCGGTGCTGTGACTCTGGTCAGCGCCCCGCGCCCAGACCCTCGGCACCACAGCCTGGTAAGG----------------------------------------------------------------------GGGCGGGGCTCGAACTC---------------------------------------
i calJac3.chr22             C 0 I 2
s mm10.chr7                   3694510 373 + 145441459 GGGCGGGGTCTTGCGCTGAGGGCGTGGAAGACTTCAGTCGGG---TCGGTGG----------------------------G-GCTGTTTGGGTGACCGCGACGCACCCC-CACT-CCGCAGGAAGATGCTGGTGGTGGAGGTCGCAAATGGCCGCTCGCTGGTGTGGGGAGCCGAGGCCGTGCAGGCGCTGCGGGAGCGTCTGGGAGTCGGGGGACGCACGGTGGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTTCCGCTTCTGCTGCTGCCTGAAGAAGCCCGGCTCCTGGCCGAGATAGGCGCGGTGACCCTAGTCAGCGCCCCGCGCCCGGACCCCCGCAACCATGGCTTGGTAAGAAACGAA----------------------------------AGGC-------CCTGA----------TAGTGGGAAGGCCTGGGA------------------------------------------
i mm10.chr7                 I 1 C 0
s canFam3.chr1               19652025 496 - 122678785 GGGCGGGGCGT--CGCTGAGGcacccc-accccccacccccacc-ccacccccacccccacccccacctccGCGGTGGGAGCACTCTGTCGGTGACCGCTGTGCCTCCCTGGCCCCCGCAGGAGGATGCTGGTGGTGGAGGTGGCGAACGGCCGCTCCCTGGTATGGGGGGCCGAGGCGGTGCAGGCACTGCGGGAGCGTCTGGGAGTAGGGGGCCGCACGGTGGGCGCCCTGCCCCGCGGGCCCCGCCAGAACTCGCGCCTGGGCCTCCCGCTGCTGCTGATGCCCGAAGAGGCGCGGCTTCTGGCCGAAATCGGCGCGGTGACCCTGGTCAGCGCCCCGCGCCCGGATCCGCGCCAACACAGCCTGGTAAGGGGCGGACGGGGTGGGGGCGGTGCAAACGCTCAGCACGTGGAGGCAGGACAGCCAGACTGCGGGTCTCTGCGGGAGGGGTCTGGGCGCCTTGGATTCTGGAGACTGGGATCCCCAGGTTCAGGCTTT
i canFam3.chr1              C 0 C 0

a score=266952.000000
s hg38.chr19_GL949751v2_alt    166595 77 +   1002683 GGGTTCGGTGGGAG--C---GGGACCTGGGAGTCAAGTTTCCTGGCTTCTGAAGGGACCATAAGCT-----TGGA------GGTTCCAGCGAA
s panTro4.chr19              59099278 77 +  63644993 GGGTTCGGTGGGAG--C---GGGACCTGGGAGTCAAGTTTCCTGGCTTCCGAAGGGACCATAAGCT-----TGGA------GGTTCCAGCGAA
i panTro4.chr19             I 2 C 0
s ponAbe2.chr19              55977029 77 +  60714840 GGGGTCGGTGGGAG--C---GGGGCCTGGGAGTCAGGATTCTTGGCTTCCGAAGGGACCATAAGCT-----TGGA------GGTTCCAGTGAA
i ponAbe2.chr19             I 194 C 0
s nomLeu3.chr10             102746536 77 - 106955855 GGGTTCGGTGGAAG--C---GGGGCCTGGGAGTCAGGATTCTTGGCTTCCGAAGGGACCATAAGCT-----TGGA------GGTTCCAGCGAA
i nomLeu3.chr10             I 194 C 0
s rheMac3.chr19              60036197 77 +  64156825 GGGTTCGGTGGGAG--C---CGGGCCTGGGAGTCAGGATTCCTGGTTTCCGAAGGGACCGTAAGCT-----TGGA------GGTTCCAGCGAA
i rheMac3.chr19             I 194 C 0
s macFas5.chr19              55061620 77 +  59248254 GGGTTCGGTGGGAG--C---GGGACTTGGGAGTCAGGATTCCTGGTTTCCGAAGGGACCGTAAGCT-----TGGA------GGTTCCAGCGAA
i macFas5.chr19             I 2 I 192
s papAnu2.chr19              47164086 77 +  51301725 gggttcggTGGGAG--C---GGGACTTGGGAGTCAGGATTCCTGGTTTCCGAAGGGACCGTAAGCT-----TGGA------GGTTCCAGCGAC
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               46869651 77 +  50890351 GGGTTCGGTGGGAG--C---CGGACCTGGGAGTCAGGATTCCTGGCTTCCGAAGGGACCATAAGCT-----TGGA------GGTTCCAGCGAC
i chlSab2.chr6              I 194 C 0
s calJac3.chr22              45451934 77 +  49145316 GGATCTGGTGGGAG--C---GGGGCCTGAGAGTCCGGATTACTGGCTTCCGAAGCGACCATAAGCT-----TGGA------GGTTCCAGCGAA
i calJac3.chr22             I 2 C 0
s mm10.chr7                   3694883 81 + 145441459 GGGCCTGTTGGAAGGTT---GTAAACTG---GTCAGAATTCCTGTCTTCCTAAGGGACTGCAGGATGTGTCTTGG------GGTTCCAGTTAA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19652521 85 - 122678785 GGGTTAGGGAGGAG--TCAGGGAGCCAGGGAGCCAAGGTTCCTGGCTTCCTAAGGCAGGGCAGACT-----TGGATCCTGGGATTCCCGCCG-
i canFam3.chr1              C 0 C 0

a score=3160539.000000
s hg38.chr19_GL949751v2_alt    166672 753 +   1002683 GTGTGCTTCTCAGGCCCTGACATCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCTAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCAGCTCAA----GCCAGGAGGCCGGCTCGAGCCAGGCTGCCAAAGAGGATGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCTGGTGAG--CATGGGAGGTGGAGTCCAGGGACCACGGGAAGGAGAG-GAGAGATCTTTTAGGAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGACTTTACCCCTTGAATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGCCCCTCGTCTTCCCAAGCAGGACCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCGGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCACGAGCTGCGCTACAGTATCTACAGAGACCTGTGGGAGCGAGGCTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTATGGGTTGGGGCCTCTGGTTGCTGTGCCTTTCCATACGATCCCAATGTATTCTGCGTTTTTCTTT---------Tttttttttttgtctt
s panTro4.chr19              59099355 755 +  63644993 GTGTGCTTCTCAGGCCCTGACATCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCTAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCAGCTCGA----GCCAGGAGGCCGGCTCGAGCCAGGCTGCCAAAGAGGATGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--CATGGGAGGTGGAGTCCAGGGACCACGGGAAGGAGAG-GAGAGATCTTTTAGGAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGACTTTACCCCTTGAATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGCCCCTCGTCTTCCCAAGCAGGACCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCGGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCTGGCCGCCCTGCCCACGAGCTGCGCTACAGTATCTACAGAGACCTGTGGGAGCGAGGCTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTATGGGTTGGGGCCTCTGGTTGCTGTGCCTTTCCATACGATCCCAATGTATTCTGCGTTtttcttttc-------tttttttttttgtctt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55977106 752 +  60714840 GTGTGCTTCTCAGGCTCTGACATCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCTAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCTGGCTCGA----GCCAGGAGGCCGGCTCGAGCCAGGCTGTCAAAGAGGATGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--CATGGGAGGTGGAGTCCAGGGACCACGGGAAGGAGAG-GAGAGATCTTTTAGGAATTTTAGCTGGGAGTCCAGTGACTGGGTCTCCCTGAGGA-TGAGAAAACTTTACCCCTTGAATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGCCCCTCCTCTTCCCAAGCAGGACCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGGCCGGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCACGAGTTGCGCTACAGCATCTACAGAGACCTGTGGGAGCGAGGCTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTATGGGTTGGGGCCTCTGGTTGCTATGCCTTTCTATATGATCCCAATGTATTCTGTGtttttttt----------ttcttttttttgtctt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102746613 744 - 106955855 GTGTGCTTCTCAGGCCCTGACATCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCTAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCA----------------------GCTCGAGCCAGGCTGCCAAAGAGGATGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--CATGGGAGGTGGAGTCCAGGGACCACGGGAAGGAGAG-GAGAGATCTTTTAGGAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGATTTTGCCCCTTGGATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGCCCCTCCTCTTCCCAAGCAGGACCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCGGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCTGGCCGCCCTGCCCACGAGCTGCGCTACAGCATCTACAGAGACCTGTGGGAGCGAGGCTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTATGGGTTGGAGCCTCTGGTCGCTGTGCCTTTTCATACGATCCCAATGTATTCTGCGTTTTTCTTTTCTAtcttttttttttttttgtctt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60036274 758 +  64156825 GTGTGCTTCTCAGGCCCTGACAGCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCCAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCAGCTGGA----GCCATGAGGCTGGCTCGAGCCAGGCTGCCAAAGAGAACGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--TATGGGAGGTGGAGTCCACGAACCACGGGAAGGAGAG-GAGAGATCTTTTGGAAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGACTTTGCCCCTTGGATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGTCCCTCCTCTTCCCAAGCAGAGCCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCTGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCATGAGCTGCGCTACAGCATTTACAGAGATCTGTGGGAGAGAGGGTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTTTGGGTTGGGGCCTCTGGTTGCTGTGCCTTTCCATACGATCCCAATGTATTCTGCGtttttttttctttc----tttttttttttgtctt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55061889 759 +  59248254 GTGTGCTTCTCAGGCCCTGACAGCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCCAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCAGCTCGA----GCCATGAGGCTGGCTCCAGCCAGGCTGCCAAAGAGAACGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--TATGGGAGGTGGAGTCCACGAACCACGGGAAGGAGAG-GAGAGATCTTTTGGAAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGACTTTGCCCCTTGGATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGTCCCTCCTCTTCCCAAGCAGAGCCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCTGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCATGAGCTGCGCTACAGCATTTACAGAGACCTGTGGGAGAGAGGGTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTTTGGGTTGGGGCCTCTGGTTGCTGTGCCTTTCCATACGATCCCAATGTATTCTGCGTTTTTTTTTCTttct---tttttttttttgtctt
i macFas5.chr19             I 192 C 0
s papAnu2.chr19              47164163 756 +  51301725 GTGTGCTTCTCAGGCCCTGACAGCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCCAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCAGCTCGA----GCCAGGAGGCCGGCTCGAGCCAGGCTGCCAAAGAGAACGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--TATGGGAGGTGGAGTCCACGAACCacgggaaggagag-gagagatcTTTTGGAAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGACTTTGCCCCTTGGATTTACCAAACTCTTCTCTGTActccccacc--------aggtccctcctcttCCCAAGCAGAGCCTTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCTGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCATGAGCTGCGCTACAGCATTTACAGAGACCTGTGGGAGAGAGGCTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGATTTCCTGGTCTATCCTGGTGAGTTTGGGTTGGGGCCTCTGGTTGCTGTGCCTTTCCATACGATCCCAATGTATTctgcgttttttttttct------tttttttttttctctt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46869728 761 +  50890351 GTGTGCTTCTCAGGCCCTGACAGCCTTCAAGCGCCAGCAAGAGGAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCTCCTGGAGAAGATTACGGAGGGCCAGGCTGCCAAGAAGCAGAAACTAGAACAGGCTTCAGGGGCCAGCTCGA----GCCATGAGGCCGGCTCGAGCCAGGCTGCCAAAGAGAACGAGACCAG---TGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCCCGTGAG--TATGGGAGGTGGAGTCCACGAACCACGGGAAGGAGAG-GAGAGATCTTTTGGAAATTTTAGCAGGGAATCCAGTGCCTGGGTCTCCCTGAGGG-TGAGAAGACTTTGCCCCTTGGATTTACCAAACTCTTCTCTGTACTCCCCACC--------AGGTCCCTCCTCTTCCCAAGCAGAACCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCTGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCATGAGCTGCGCTACAGCATTTACAGAGACCTGTGGGAGAGAGGGTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTGGTGAGTTTGGGTTGGGGCCTCTGGTTGCTGTGCCTTTCCATACGATCCCAATGTATTCTGCGTTTTTTTTTTTTCTTTC-Ttttttttttggtctt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45452011 749 +  49145316 GTGTGCTTCTCAGGCCCTGACATCCTTCAAGCGCCAACAAGAGCAGAGCTTCCAGGAGCAGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGGCAGGAGCTCCTAGAGAAGATTACGGAGGGCCAGGCTGCCAAGAAGCAGAAGCTGGAACAGGCTTCAGGGGCCAGCGCGA----GCCAGGAGGCCGGCAGGAGCCAGGCTGCCAAAGTGAACGAGACCAG---TGATCTCCAGGCTTCGGGAGAGCAGGAGGAAGCCGGTGAG--CGTGGGAGGTGGAGTCCAGGGACCATGGGAAGAAAAG-GAGAGATCTTTTGGGAATTTTAGCTGGGAATCCAGTGCCTGGGTCTCCTTGAGGG-TGCGAAGACTTTGCCCCTTGGATTTACCAAACTCTTCTCTGTACT-TCAACC--------AGGCCCCTCCTCTTCCCAAGCAGGACCCTCAAATGGAGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCAAGGCCTCGACCTGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCATGAGCTGCGCTACAGCATCTACAGAGACCTGTGGGAGCGGGGCTTCTTCCTCAGCGCGGCTGGGAAGTTTGGAGGTGACTTCCTGGTCTATCCGGGTGAGTTTGGGTTGGGGCCTCTGGTTGCTATGCTAGTCTTTACAATCTCAATGTATTCTGCGGttttc------------ttacctttcttctctt
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3694964 741 + 145441459 GTTTACTTCTCAGGCCCTAGCATCGTTCAAACGCCAGCAAGAGCAGAGTTTCCAGGATCAGAACACTTTGGCAGCCGAGGCCCGGGAGACCCGGCGTCAGGAGCTTCTAGAGAAGATCGTAGAGGGCCAGGCTGCCAAGAAGCAGAAGCTGGAACAGGATTCAGGGGC-AGATGAAGGAGGCCAAGAAGCCGGTGGAAGTGAGGCTACCCAAGGGAGTGAGACCAGTGATGATGGCCAGCCTTCTGCGGAGCAGGAGGGAGCAGGTGAGATTTTAGGATTTAGAGTTAA--AATTTGGGGCAGGAGGG-AGGGAAACTTTGGAGAATTTTAG---------------TTGGATTTTTCTGGCGC-TAAGGAGACCTTG-----TGGACTCAGTAAATTCTTTT---TGCTCCCAGCCCCATCCCTAGATTCTTCATCTCCCCAACCAGGACCTTCAAATGGGGTGACTCCCTTGCCCAGATCAGCCCTGCTTATCCAGCTGGCCACTGCCAGGCCTCGGCCTGTAAAAGCTAAGCCTCTGGACTGGCGTGTGCAGTCCAAAGACTGGCCCCATGCTGGCCGTCCTGCCCACGAGCTGCGCTACAGCATCTACCGAGACCTGTGGGAGAGAGGTTTCTTCCTCAGCGCAGCAGGGAAGTTTGGTGGTGACTTCCTGGTCTATCCTGGTGAGTTTGG---GGGGACTCTGGTGGCTGTACCTTTTCTAATGGTCTTTATTTGTTGTGCATTTTCTTTT---------TTTTGTCCCATTTCTT
i mm10.chr7                 C 0 I 4761
s canFam3.chr1               19652606 691 - 122678785 CTTTACTTCTCAGGCTCTGGCATCCTTCAAACGCCAGCAAGAGCAGGGCTTCCAGGAGCAAAGCGCCCTGGCAGCGGAGGCCCGTGAGACTCGTCGTCAGGAACTCCTAGAGAAGATTGCAGAGGGCCAGGCTGCGAAGAAACAGAAGCTGGAGCAGGAATCGGTGGCCAGCGAGA----GCCAGGAGGCCAGTGCGAACCCGGCTGCCGCAGAGAGTGAGGCCGG---TGCGAGCCAGGCTCCTGGAGAGCCGGAGGAAGCAGGTGAG--GGTGGGA-GTGGAGTCCACGGACCAGGAGCAGGGGAGAGGGAGATCTTTTGGGAATCCTGGCTGGGAATCTAGGGCCTGGGGCTCATTGGGGGATGGGAAGACCTG--TCCTTGGATGCATCAGACTCTTGCATTCACCTCCCGC---------AGGTTCCTCCTCTCCTCAGCCAGGGCCGTCAAATGGAGTGGCCCCTTTGCCCAGGTCGGCTCTGCTGGTCCAGCTGGCCACTGCTAGGCCTCGACCTATCAAGGCTAGGCCCCTGGATTGGCGTGTCCAGTCCAAAGACTGGCCGCATGCTGGCCGTCCTGCCCATGAGCTTCGCTATAGCATCTACAGAGACCTGTGGGAACGAGGCTTCTTCCTCAGTGCAGCTGGCAAGTTCGGGGGTGACTTCCTGGTCTATCCTGGTGAGTTTTG-TTGGGACCTCTCCTTGT--------------------------------------------------------------------
i canFam3.chr1              C 0 C 0

a score=775530.000000
s hg38.chr19_GL949751v2_alt    167425 259 +   1002683 aatagaggtggggtctc--ttgttgcttaggctggtccctattcctgggctcaagcaatccttccacctcggccccccaaagtgctggaattataggcCCAGCTGCA------TTTTTCTTTTTTGTCTCACTTTCTCTTAGCCTCTGAAATTCATAGACAGACAGGAAACATTTGGGAGCTCCTGAACTCATTGGGCAAGCAGTTTAACGACTTTTATTAAATGATTACTGTGATCCAGAAGATTCACTTAGAAGT-AGTTAGACAT
s panTro4.chr19              59100110 261 +  63644993 aatagaggtggggtctctattgttgcttaggctggtcccgattcctgggctcaagcaatccttccacctcggccccccaaagtgctggaattataggcCCAGCTGCA------TTTTTCTTTTTTGTCTCACTTTCTCTTAGCCTCTGAAATTCATAGACAGACAGGAAACATTTGGGAGCTCCCGAACTCATTGGGCAAGCAGTTTAACGACTTTTATTAAATGATTACTGTGATCCAGAAGATTCACTTAGAAGT-AGTTAGACAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55977858 261 +  60714840 aatagaggtggggtctctattgttccttaggctggtcccaattcctgggctcaagcaatccttccacctcagccccccaaagtactgaaattataggcCCAGCTGCA------TTTTTCTTTTTTGTCTCATTTTCTCTTAGTCTCTGAAATTCATAGACAGACAGGAAACATTTGGGAGCTCCCGAACTCATTGGGCAAGCAGTTTAATGACTTTTATTAAATGATTACTGTGATCCAGAAGATTCACTTAGAAGT-AGTTAGACAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102747357 258 - 106955855 aatagaggtggggtctctattgttgctcaggctggtcccaattcctgcgcttaagcagtccttccacctcggcctcccaaagtgctggaattacaggcCCAGCTGCA------TTTTTCTTTTTTGTCTCACTTTCTTTTAGCCTCTGAAATTCAT----AGACAGGAAACATTTGGGAGCTCCCGAACTCATTGGGCAAGCAGTTTAGCGACTTTTATTAAATGATTACTGTGATCCAGAAGATTCATTTAGAAATAAGTTAGACAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60037032 265 +  64156825 aatagagatggggtctctattgttgctcaggctggtcccgtttcctgggctcaagcagtcctcccacttcggcctcccaaagtgctgggattacaggcCCAGCGGCA--TTTTTTTTTTTTTTTTGTCTCACTTTCTCTTAGCCTCTGAAATTCATAGATGGACAGGAAACATTTTGGAGCTCCTGAACTCATTGGGAAAGCAGTTTAGCAACTTTTATTAAATGTTTACTATGATCCAGAAGATTCGCTTAGAAGT-AGTTAGACAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55062648 263 +  59248254 aatagagatggggtctctattgttgctcaggctggtcccgtttcctgggctcaagcagtcctcccacttcggcctcccaaagtgctgggattacaggcccagctgca----ttttttttttttttgtCTCACTTTCTCTTAGCCTCTGAAATTCATAGATGGACAGGAAACATTTTGGAGCTCCTGAACTCATTGGGAAAGCAGTTTAGCAACTTTTATTAAATGTTTACTATGATCCAGAAGATTCGCTTAGAAGT-AGTTAGACAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47164919 267 +  51301725 aatggagatggggtctctgttgttgctcaggctggtcccgtttcctgggctcaagcagtcctcccacctcggcctcccaaagtgctgggattacaggcccagctgcattttttttttttttttttgtctcacttTCTCTTAGCCTCTGAAATTCATAGACGGACAGGAAACATTTTGGAGCTCCTGAACTCATTGGGAAAGCAGTTTAGCaacttttattaaatgtttactgtGATCCAGAAGATTCACTTAGAAGT-AGTTAGACAt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46870489 264 +  50890351 aatagagatggggtctctattgttgctcaggctggtcccgtttcctgggctcaagcagtcctcccacctcggcctcccgaagtgctgggattacaggcCCAGCTGCA---TTTTTTTTTTTTTTTGTCTCACTTTGTCTTAGCCTCTGAAATTCATAGACGGACAGGAAACATTTTGGAGCTCCTGAAATAATTGGGAAAGCAGTTTAGCAACTTTTATTAAATGTTTACTGTGATCCAGAAGATTCGCTTAGAAGT-AGTTAGACAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45452760 257 +  49145316 aacagagatggggtctgtgttgttgctcaggctggtcccaattcctgggctcaagcaatcttcgcacctcagcctcccaaagtgctgggattacaggcCCAGCTGCA------TTTTTCTTTTTTGTCTCACTTTCTGTTAGCTTCTTACATTCACAGATGGACAAGAAACATTTGAGAGCTCCCCAACTCACTGGGCAAGCAGTTTAGCGACTCTTATTAAATGCTTACTGTGATCCAGAAGATTAACTCAGAAGC-----AGACAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19653297 183 - 122678785 ------GAAAGAGACCTCCTTTTTCCTCAAAGCCCTCCCCTTTTTT-------CGCAAGCCTGCCACC---------------------------------------------TTTTTGTCTTT------------TCTCAGCCTCTGAAACCCATGGAAGGACAAG-AAcacttgggaac---------catttgaagggcagtatagtaaatc----taagcactttctttgatccagaagtttcactcagagac-tcttagatat
i canFam3.chr1              C 0 I 3128
e mm10.chr7                   3695705 4761 + 145441459 I

a score=339242.000000
s hg38.chr19_GL949751v2_alt    167684 112 +   1002683 CAggctgggcgcaatggctcacgcctgtaatcccaacactttgggaggccaagacaggtggatcacctgaggtcaggagtttgataccagtctggccaacatggtgaaaccc
s panTro4.chr19              59100371 109 +  63644993 ---gctgtgcgcaatggctcacgcctgtaatcccaacactttgggaggccaagacaggtggatcacctgaggtcaggagtttgataccagtctggccaacatggtgaaaccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55978119 112 +  60714840 CAggctgggcgcagtggctcatgcctgtaatcccagcactttgaaaggccaagacaggtggatcacctgaggtcaggagtttgagaccagtctggccaacatggtgaaaccc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102747615 112 - 106955855 CAggctgggcgcaatggctcacacctgtaatcccaacactttgggaggccaagacaggtggatcatctgaggtcaggagtttgagaccagtctggccaacatggtgaaaccc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60037297 112 +  64156825 CAggctgggcgccatggctcacgcctgtaatcccagcactttgggaggctgagacaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55062911 112 +  59248254 CAggctgggcgccatggctcacgcctgtaatcccagcactttgggaggctgagacaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47165186 112 +  51301725 caggctgggcgccatggctcacgcccgtaatcccagcactttgggaggctgagacaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46870753 112 +  50890351 CAggctgggcgccatggctcacacccgtaatcccagcactttgggaggctgagacaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45453017 111 +  49145316 CAggccg-gtgcgatggctcacgcctgtaatctcagcactttgggagactgaggcgggcagatcacctgaggtcaggagttcaagaccagcctggccaacgtgaagaaaccc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3695705 4761 + 145441459 I
e canFam3.chr1               19653480 3128 - 122678785 I

a score=394773.000000
s hg38.chr19_GL949751v2_alt    167796 167 +   1002683 catctctactaaaaatactaaaactaactgggcgtggt-ggtgggtgcctgtatttccagctactcgggaggctgaagcaggagaatcatgtgaacccagggggcagaggttgtagtgagccaagatcgtgccattgcactccagcctgggggacaagagcgagactt
s panTro4.chr19              59100480 167 +  63644993 catctctactaaaaatactaaaactaactgggtgtggt-ggtgggtgcctgtatttctagctactcgggaggctgaagcaggagaatcacgtgaacccacggggcagaggttgtagtgagccgagatcgtgccagtgcactccagcctgggggacaagagcgagactt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55978231 167 +  60714840 cgtctctactaaaaatactaaaactaactaggcatggt-ggtgggcgcctgtatttccagctactcgggaggctgaggcaagagaatcacatgaacccagggggcagaggttgtagtgagccgagatcgtgccattgcactccagcctgggggacaagagcaagactt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102747727 167 - 106955855 cgtctctactaaaaatactaaaactaactgggcgtggt-ggtgggtgcctgtatttccagctactcgggaggctgaggcaggagaatcacttgaacccagggggcagaggttgtagtaaaccaagattgtgccattgcactccagcctgggggacaagaatgagactt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60037409 168 +  64156825 cgtctctactaaaaatactaaaactagctgggtgtggtgggtaggcgcctgtatttccagctactcaggaggctgaggcaggagaatcacttgaacccagggggcagaggttgcagtgagctgagatggtgccattgtactccagcctggcgaacaagagcgagactt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55063023 168 +  59248254 cgtctctactaaaaatactaaaactagctgggtgtggtgggtaggcgcctgtatttccagctactcaggaggctgaggcaggagaatcacttgaacccagggggcagaggttgcagtgagctgagatggtgccactgcactccagcctggggaacaagagcgagactt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47165298 168 +  51301725 cgtctctactaaaaatactaaaactagctgggtgtggtgggtaggcgcctgtatttccagctactcgggagcctgaggcaggagaatcacttgaacccggggggcagaggttgcagtgagctgagatcgtgccattgcactccagcctggggaacaagagcgagactt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46870865 168 +  50890351 cgtctctactaaaaatactaaaactagctgggtgtggtgggtaggcacctgtatttccagctactcgggaggctgaggcaggagaatcacttgaacccagggggcagaggttgcagtgagctgagatcatgccattgtactccagcctggggaacaagagcgagactt
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3695705 4761 + 145441459 I
e canFam3.chr1               19653480 3128 - 122678785 I
e calJac3.chr22              45453128   0 +  49145316 C

a score=13970.000000
s hg38.chr19_GL949751v2_alt    167963 15 +   1002683 tgtctc----aaaaaaaaa
s panTro4.chr19              59100647 19 +  63644993 tgtctcaaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55978398 11 +  60714840 tgtctc--------aaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102747894 13 - 106955855 cgtctc------aaaaaag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60037577 12 +  64156825 cgtctc-------aaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55063191 13 +  59248254 cgtctc------aaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47165466 11 +  51301725 cgtctc--------aaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46871033 16 +  50890351 cgtctc---aaaaaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45453128  8 +  49145316 tgtctt-----------ta
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3695705 4761 + 145441459 I
e canFam3.chr1               19653480 3128 - 122678785 I

a score=234839.000000
s hg38.chr19_GL949751v2_alt    167978 78 +   1002683 aaaaaaaaaaaGCCTAGAAGTGGAATAGTTGTGTCCAAG-AGCATCTGTTTTAGAGTATCTATAGTGATGGCTGAAATG
s panTro4.chr19              59100666 78 +  63644993 aaaaaaaaaaaGCCTAGAAGTGGAATAGTTGTGTCCAAG-AGCATCTGTTTTAGAGTATCTATAGTGATGGCTGAAATG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55978409 78 +  60714840 aaaaaaaaaaaGCCTAGAAGTGGAATAGCTGTGTCCGAG-AGCATCTGTTTTAGAGTATCCATAGTGATGGCTGAAATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102747907 78 - 106955855 aaaaaaaaaaaGCCTAGAATTGGAATAGTTGGGTCCAAG-AGCATCTGTTTTAGAGTATCCATAGTGATGGCTGAAATG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60037589 77 +  64156825 aaaaaaaaaaaGTCTAG-AGCGGAATAGTTGGGTCCAAG-AGCATCTGTTTTAGAGTATCCATAGTGATTGCTGAAATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55063204 77 +  59248254 aaaaaaaaaaaGTCTAG-AGCGGAATAGTTGGGTCTAAG-AGCATCTGTTTTAGAGTATCCATAGTGATTGCTGAAATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47165477 77 +  51301725 aaaaaaaaaaagtctag-agcGGAATAGTTGGGTCCAAG-AGGATCTGTTTTAGAGCATCCATAGTGATCGCTGAAATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46871049 77 +  50890351 aaaaaaaaaaaGTCTAG-AGCGGAATAGTTGGGTCCAAG-AGCATCTGTTTTAGAGTATCCATAGTGATTGCTGAAATG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45453136 78 +  49145316 aaagaaaaaaaatCTAGAAGTGTAGTAGTTG-GTCCAAGCATTATCTGGTTTAGACCATCCAGAGGAGTTGCTGAAATG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19656608 78 - 122678785 aagtaaaaaatgccaaaaagtggaactgctaggtacaag-aagagctatttggaaatattcatagtgattactaaaatg
i canFam3.chr1              I 3128 C 0
e mm10.chr7                   3695705 4761 + 145441459 I

a score=2580084.000000
s hg38.chr19_GL949751v2_alt    168056 661 +   1002683 ATCTCAGATCTCCTCCCAGTGGTCGTTCCCGTGGCGTCCAGCCGTCTGCCATTGGTCACTGCTTCAGTGCCTCTCTCCTTCCCCCAGGTGACCCCCTCCGCTTCCACGCCCATTATATCGCTCAGTGCTGGGCCCCCGAGGACACCATCCCACTCCAAGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAACTCCAGAGACCTA-GGGGATGTGGCTGTGTCGGCAGCAAGAGCCTTTCTGGATGTT--CCCCAGCTCTTCTCTG------GGAGTCTAGAACATCCTCCTACCTTTCTCCGCGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACATCTTTTTTATGT--------------TCTTCCTTGTTTCAAAGCACTTattggctgtg---t--ttttgtagttacctattttcacactgtgagcttcccgagaatggggcctg----ggtttgattca--tct--gttttctacagggtttaagtctcaggaggtctcaataaacttggtatataaat-----gttcatgatttgaatgtttgcgacagtcctggaaccc------gtggatggtctcatctgcatgtacaggtgagaaaaaggcctggagggg
s panTro4.chr19              59100744 661 +  63644993 ATCTCAAATCTCCTCCCAGTGGTCGTTCCCGTGGCGTCTAGCCCTCTGCCATTGGTCACTGCTTCAGTGCCTCTCTCCCTCCCCCAGGTGACCCCCTCCGCTTCCACGCCCATTATATCGCTCAGTGCTGGGCCCCCGAGGACACCATCCCACTCCAAGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAACTCCAGAGACCTA-GGGGATGTGGCTGTGTCGGCAGCAAGAGCCTTTCTGGATGTT--CCCCAGCTCTTCTCTA------GGAGTCTAGAACATCCTCCTACCTTTCTCCGCGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACATCTTTTTTATGT--------------TCTTCCTTGTTTCAAAGCACTTattggctgtg---t--ttttgtagttacctattttcacactgtgagcttcccgagaatggggcctg----ggtttgattca--tct--gttttctacagggtttaagtctcaggaggtctcaataaacttgttacataaat-----gttcatgatttgaatgtttgcgacagtcctggaaccc------gtggatggtctcatctgcatgtacaggtgagaaaaaggcctggaggag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55978487 660 +  60714840 ATCTCAAATCTCCTCCCAGTGGTCATTCCCGTGGCGTCCAGCCCTCTGCCATTGGTCACTGCTTCAGTGCCTCTCTCCCTCCCCCAGGTGACCCCCTTCGCTTCCACGCTCATTACATCGCTCAGTGCTGGGCCCCCGAGGACCCTATCCCACTCCAAGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAACTCCAGAGACCTAGGGGGATGTGGC--TGTCTGCAGCAAGAGCCTTTCTGGATGTT--CCCCAGCTCTTCTCTG------GGAGTCTAGAACATCCTTCTACCTTTCTCCATGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACATCATTTTTATGT--------------TCTTCCTTGTTTCAAAGCACATattggctgtg---t--ttttgtagttacctattttcacactgtgagcttcccgagaatggggcctg----ggtttgattca--tct--gttttctacagggtttaagtctcaggaggtctcaataaacttgttatataaat-----gttcatgatttgaatgtttgcgacagtcctggaaccc------ctggatggtctcatctgcatgtacagatgagaaaaaggcctggaggag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102747985 650 - 106955855 ATCTCAAAT---CTCCCAGTGGTCGTTCCTGTGGTGTCCAGCCCTCTGCCATTGGTCACTGCTTCAGTGCCTCTCTCCCTCCCCCAGGTGACCCCCTCCGCTTCCACGCCCATTACATCGCTCAGTGCTGGGCCCCCGAGGACCCCATCCCACTCCAAGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAGCTCCAGAGACCTAGGGGGATGTGGCTGTGTCTGCAGCAAGAGCCTTTCTGGAGGTT--CCCCAGCTTTTCTCTG------GGAGCCTAGAACATC---CTACCTTTCTCCGTGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACGTCCTTTTTATGT--------------TCTTCCTTGTTTCAAAGCACTTATTGGCTGTG---T--TTTTGTAGTTCCCTGTTTTCACACCGTGAGCTTCCCGAGAATG------G----GGTTTGATTCA--TCT--GTTTTCTACAGGGTTTAAATCTCAGGAGGTCTCAAtaaacttgttatataaat-----gttcatgatttgaatgtttacgacagtcctggtacct------gtggatggtctcatctgcatgtacagatgagaaaaaggcctggaggag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60037666 661 +  64156825 ATCTCAAATCTCCTCCCAGTGGTCATTCCTGTGGCATCCAGCCCTCTGCCATTGGTCACTGCTTCAGCGCTTCTCTCCCTCCCCCAGGTGACCCCCTCCGCTTCCATGCCCACTACATTGCTCAGTGCTGGGCCCCGGAGGACCCCATCCCACTTCAGGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAACTCCA-AGACCTAGGGGGACATGGCTGTGTCTGCAGCAAGAGCCTTTCTAGATGTT--CCCCAGCTCTTCTCTG------GGAGTCTAGAACATCCTCCTACCTTTCTCTGCGGTTAGTTTTTGATTCCAGGTTTTCGAACACTAcatcctttttatgt--------------tcttccttgtttgaaagcacttattggctgtg---t--ttttgtagttacctgttttcacactgtgagcttcctgagaatggggcctg----ggtttgattca--tct--gttttctacagggtttaagtctcaggagatctcaataaacttgttatataaat-----gttcatgatttgaatgtttatgataaacctggaaccg------gtggatagtctcatctgcatatacagatgagaaaaaggcctggaggag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55063281 661 +  59248254 ATCTCAAATCTCCTCCCAGTGGTCATTCCTGTGGCATCCAGCCCTCTGCCATTGGTCACTGCTTCAGCGCTTCTCTCCCTCCCCCAGGTGACCCCCTCCGCTTCCATGCCCACTACATCGCTCAGTGCTGGGCCCCGGAGGACCCCATCCCACTCCAGGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAACTCCA-AGACCTAGGGGGACATGGCTGTGTCTGCAGCAAGAGCCTTTCTAGATGTT--CCCCAGCTCTTCTCTG------GGAGTCTAGAACATCCTCCTACCTTTCTCTGCGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACATCCTTTTTATGT--------------TCTTCCTTGTTTGAAAGCACTTATTGGCTGtg---t--ttttgtagttacctgttttcacactgtgagcttcctgagaatggggcctg----ggtttgattca--tct--gttttctacagggtttaagtctcagaagatctcaataaacttgttatataaat-----gttcatgatttgaatgtttatgacaaacctggaaccg------gtggatagtctcatctgcatatacagatgagaaaaaggcctggaggag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47165554 661 +  51301725 ATCTCAAATCTCCTCCCAGTGGTCGTTCCTGTGGCATCCAGCCCTCTGCCATTGGTCACTGCTTCAgtgcttctctccctcccccaggtgACCCCCTCCGCTTCCATGCCCACTACATCGCTCAGTGCTGGGCCCCGGAGGACCCCATCCCACTCCAGGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAGCCTGCAGTGAACTCCA-AGACCTAGGGGGACATGGCTGTGTCTGCAGCAAGAGCCTTTCTAGATGTT--CCCCGGCTCTTCTCTG------GGAGTCTAGAACATCCTCCTACCTTTCTCTGCGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACATCCTTTTTATGT--------------TCTTCCTTGTTTGAAAGCACTTATTGGCTGTG---T--TTTTGTAGTTACCTGTTTTCACACTGTGAGCTTCCTGAGAATGGGGCCTG----GGTTTGATTCA--TCT--GTTTTCTACAGGGtttaagtctcaggagatctcaATAAACTTGTTATATAAAT-----GTTCATGATTTGAATGTTTATGACAAACCTGGAACCG------GTGGATAGTCTCATCTGcatatacagatgagaaaaaggcctggaggag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46871126 660 +  50890351 ATCTCAAATCTCCTCCCAGTGGTCGTTCCTGTGGCATCCAGCCCTCTGCCATTGGTCACTGCTTCAGTGC-TCTCTCCCTCCCCCAGGTGACCCCCTCCGCTTCCATGCCCACTACATCGCTCAGTGCTGGGCCCCGGAGGACCCCATCCCACTCCAGGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCCGAAAGACCCTGCTCCTCTGTTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCTTGCAATGGGCCAGCCTGCAGTGAACTCCA-AGACCTAGGGGGACATGGCTGTGTCTGCAGCAAGAGCCTTTCTAGATGTT--CCCCAGCTCTTCTCTG------GGAGTCTAGAACATCCTCCTACCTTTCTCTGCGGTTAGTTTTTGATTCCAGGTTTTCGAACACTACATCCTTTTTATGT--------------TCTTCCTTGTTTCAAAGCACTtattggctgtg---t--ttttgtagttacctgttttcccactgtgagcttcctgagaatggggcctg----ggtttgattca--tct--gttttctacagggtttaagtctcaggagatctcaataaacttgttatataaat-----gttcatgatttgaatgtttatgacaaacctggaaccg------gtggatagtctcatctgcatatatagatgagaaaaaggcctggaggag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45453214 662 +  49145316 CTCTCGCATCTCCCACCAGCAGTCACTCCTGTGGCTTCTA-CCCCCTGCCATTGGCCACTGCTTCAGTGCCTCTGTCC--CCACCAGGTGACCCACTCCGCTTCCACGCCCACTACATCGCTCAGTGCTGGGCCCCCGAGGACCCCATCCCACTCCAGGACCTGGTTGCTGCTGGGCGCCTTGGAACCAGCGTCAGAAAGACCCTGCTCCTCTGCTCTCCGCAGCCTGATGGTAAGGTGGTCTACACCTCCCTGCAGTGGGCCAGCCTGCAGTGAACTCCAGAGACCTAGGCGGATGTGGCTGTGTCGGCAGCAAGAGCCTTTCTGGATGTT--CCCAAGCTTTT-TCTG------GGAGTCTAGAACATCCTCCCACCTTTCTCTGCGCTTAGTTTTTGATTCCAGGTTTTCCAACGCTAAGTCCTTTTTATGT--------------TCTTCCTTGTCTCAAAGCACTTCCTGGCTGTG---TTGTTTTGCAGTTACCTGTTTTCACactgtgagcttcctgagaatgggaactg----ggtttgattcatctct--gttttctacaggggttaagtctcaggaggtctcaataaacttgttatctgaat-----gTTCATGAGttgaattcttatgacaatcctggaacct------gctggcggtcttatctgcatgtacagatgagaaaaaggcctggaggag
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3700466 621 + 145441459 ATGTCAGATCTCATCCCAG-----------------------CCCCTGCGGAGGGGAACTGCT---ATGCATCTTTCTTTCCCCCAGGTGATCCACTGCGTTTCCATGCTCACTACATTGCTCAGTGCTGGTCTGCTGAGGACCCCATCCCACTTCAGGACCTGGTCTCTGCAGGCCGCCTGGGAACCAGTGTCAGGAAGACCCTGCTGCTCTGCTCCCCTCAGCCTGATGGGAAGGTGGTCTACACATCCCTGCAGTGGGCCAGCCTGCAGTGAGCT------------GGAGAC-------TGTGTGTGGCAAGAACCCTCTTCAATGGTCACCCCAGCTCATCTCTGCAC---GGAGGCTTG--CGCTCTCCTGC---TCTGCCTGGTTTG-TTCCGATTCCAGGGTTTTGAACACTACATCCTTTCTGTTTGTTTTTTGGTTTTGTTTTTCCTGTTTTAAGGCGATTACTACCTGTG---TTGTTCTTTATTT---TGTTTCCAAATTGT--GCTTGTTGAGCATGGAGACTGCTTTTGTTTGGCTTT--TGT--GTTTCTTGCGGGGCTTAGGTTCCTGCAGTTCT-AATAAATTTGTTGAATAAAT-----GTTTGTATTttgagtccttacaacaatccttgaaatg------tggggc--tctcattcctgtattcagatgagaaaa-------gggaat
i mm10.chr7                 I 4761 C 0
s canFam3.chr1               19656686 677 - 122678785 -ATTCCTGTCTCCTACCTGTAGACATTCCAGTGTCTTCTAGCCTTCTACCACTGGGAACTGCTACA---TGTCTCTCTTTTACCCAGGTGACCCACTTCGTTTCCACGCCCACTACATTGCTCAGTGCTGGGCTCCTGGGGACCCCATTCCACTCCAGGACCTGGTTTCTGCTGGCCGCCTGGGGACCAGCGTCAGAAAGACGCTGCTGCTCTGTTCCCCTCAGCCTGATGGTAAAGTGGTCTACACCTCCCTGCAGTGGGCCAGCCTACAGTGAACTCCAGAGACCCGTGGGGATGTGGCTGCATCTGTGGAAAGAGCCTTTCTAGATGGT--CCCAAGCTCATCTCTGCAAATGGGAGGCTGTTA-ACCCTCCTACCTCTTTCTGCGGTTAGATTTTGACTCCGGATTTATAAACACTACATCCTTCTTATTT--------------CCCTCCCTGTTTCAAAGCACTTATTGGCtgtgatat--ttttgtagttacctatttccaagctgtgagcttcttgagggtgaagactg----ggtttgattca--tctccagtttctacagggcttagggc-caagaggtctcagtaaacttgttgaataaacgCGGAGTCTGTGTTTTGAATTCTGATGGCAATGGGGGGAGGGGGCAGTGTGGGTTTTTGCATTTGCTTATACAGAGGAGGGAA-TGCCTGGAGGAG
i canFam3.chr1              C 0 I 1091

a score=386208.000000
s hg38.chr19_GL949751v2_alt    168717 121 +   1002683 ggggactgacttgcccaaagtcacacacttagtaaatagcaggcctggcctttcaaaattggtttttctgactcctaaatctgcactctttctacctcactaaactt-cctctTGAAAAGAT
s panTro4.chr19              59101405 121 +  63644993 ggggactgacttgcccaaagtcacacacttagtaaatagcaggcctggcctttcaaaattggtttttctgactcctaaatctgcactctttctacctcactaaactt-ccttttgAAAAGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979147 122 +  60714840 ggggaatgacttgcccaaagtcacacacttagtaaatagcaggcctggcctttcaaaattggtttttctgactcctaaatctgcactctttctaccgcactaaacttcccttttgAAAAGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102748635 120 - 106955855 ggggaatgatttgcccaaagtcacacgcttagtaaatagcaggcttggcctttcaaaattgg-ttttctgactcctaaatctgcactctttctaccgcactaaactt-ccttttgAAAAGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60038327 121 +  64156825 ggggaatgacttgcccaaagtcacacagttagtaaatagcaggcctggcctttcaaaattggttttcctcactcctaaatctgcactctttctaccgcactaaactt-ccttttgAAAAGAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55063942 121 +  59248254 ggggaatgacttgcctaaagtcacacagttagtaaatagcaggcttggcctttcaaaattggttttcctcactcctaaatctgcactctttctaccgcactaaactt-cctttTGAAAAGAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166215 121 +  51301725 ggggaatgacttgcccaaagtcacacagttagtaaatAGCAGGCCTGGCCTTTCAAAATTGGTTTTCCTCACTCCTAAATCTGCACTTTTTCTACCGCACTAAACTT-CCTTTTGAAAAGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46871786 121 +  50890351 ggggaatgacttgcccaaagtcacatagttagtaaatagcaggcctggcctttcaaaattggttttcctcactcctaaatctgcactctttctaccgcactaaactt-cctttTGAAAAGAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45453876 118 +  49145316 ggg--atgacttgcc-aaggtcacacagctagtcaacagcaggcctggcctttaaaaatgtttttttctgactcctaaatctgcactctttctaccacactaaactt-ccttttgAAAAGAT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3701087 110 + 145441459 gggaaatgacttgaccagggtcacaaaact----------gggcctgggccattatacctggtctttgtgattcaggaatctgc-ctcttttcattgcactaAGGGT-TGCCTTGAAGATAT
i mm10.chr7                 C 0 I 2697
e canFam3.chr1               19657363 1091 - 122678785 I

a score=518199.000000
s hg38.chr19_GL949751v2_alt    168838 210 +   1002683 TTCTATGAAATTTCCCAGATGCATACAAACGTtataaataaaaatat---------aggctgggcacgatgacccacacctgtaatcccacagaacttttggaggccaaggcagggggatcgcttgagcccaggagtttgagaccagctctggc-aacattgtaatacccagtctctacaaaaaataatttaaaaaaaaattagccag----------ggatcccttgag
s panTro4.chr19              59101526 210 +  63644993 TTCTATGAAATTTCCCAGATGCATACAAACGTTATAAATAAAAATAT---------Aggctgggcacgatgacccacacctgtaatcccacagaacttttggaggccaaggcaggaggatcgcttgagcccaggagtttgagaccagctctggc-aacattgtaatacccagtctctacaaaaaataattaaaaaaaaaattagccag----------ggatcccttgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979269 210 +  60714840 TTCTATGAAATTTTCCAGATGCATACAAAGGTTATAAATAAAAATAT---------Aggccgggcacgatggcccacacctgtaatcccacagaacttttggaggccaaggcaggaggatcgcttgagcccaggagtttgagaccagctctggc-aacattgtaatacccagtctctacaaaaaataatttaaaaaaaaattagccag----------ggatcccttgag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102748755 218 - 106955855 CTCTATGAAATTTCCCAGATGCATACAAAGGTTATAAATAAAAATATAGGCCTGGCAggccgggcgtggtggctcacgcctgtaatcc--cagcactttgggaggccgaggtgggcggatca--tgaggtcaggagatcaagac--atcctggctaacatggtgaaaccctgtctctactaaaaat------acaaaaaattagccgggcgtggtggcgggtgcctgtag
i nomLeu3.chr10             C 0 I 9
s rheMac3.chr19              60038448 204 +  64156825 TTCTACAAAATTTCCCAGATGCATACAAAGGTTATAAATAAAAATAT---------Aggctgggcatgatggcccacacctgtaatcccacagaacttttggaggccaaggcaggaggatcgcttgagtctaggagtttgagaccagctctggc-aacactgtaataccca-tctctacaaaaaataattt-taaaaaaattag--------------GGATCCCTTGAG
i rheMac3.chr19             C 0 I 58
s macFas5.chr19              55064063 204 +  59248254 TTCTACAAAATTTCCCAGATGCATACAAAGGTTATAAATAAAAATAT---------Aggctgggcatgatggcccacacctgtaatcccacagaacttttggaggccaaggcaggaggatcgcttgagtccaggagcttgagaccagctctggc-aacactgtaataccca-tctctacaaaaaataattt-taaaaaaattag--------------ggatcccatgag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166336 204 +  51301725 TTCTACAAAATTTCCCAGATGCATACAAaggttataaataaaaatat---------aggctgggcatgatggcccacacctgtaatcccacagaacttttggaggccaaggcaggaggatcgcttgagtccaggagtttgagaccagctctgGC-AACACTGTAataccca-tctctacaaaaaataattt-taaaaaaattag--------------ggatcccttgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46871907 204 +  50890351 TTCTATAAAATTTCCCAGATGCATACAAAGGTtataaataaaaatat---------aggccgggcatgatggcccacacctgtaatcccacagaacttttagaggccgaggcaggaggatcgcttgagtccaggagtttgagaccagctctggc-aacactgtaataccca-tctctacaaaaaataattt-aaaaaaaattag--------------ggatcccttgac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45453994 188 +  49145316 TTCTATGAAACTTCTCAGATGCATGC-------ATAAATAAAAATAT---------Aggctgggcgtgatggctcacacctgtaatcccacagcactttgggaggccatcgcaggaggattgcttg--------------agaccagctctggt-gacgctgtaataccccatctctacaaaaaaataatt-taaaaaaattagccag----------ggatcccttaag
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19657363 1091 - 122678785 I

a score=38892.000000
s hg38.chr19_GL949751v2_alt    169048 16 +   1002683 cctgggaagttgaggc
s panTro4.chr19              59101736 16 +  63644993 cctgggaagttgaggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979479 16 +  60714840 cctggaaagttgaggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102748982 16 - 106955855 ctcgggaggctgaggc
i nomLeu3.chr10             I 9 I 485
s macFas5.chr19              55064267 16 +  59248254 cctgggaagttgaggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166540 16 +  51301725 cctgggaagttgaggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872111 16 +  50890351 cctgggaagttgaggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454182 16 +  49145316 cctgggaagttgaggc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19657363 1091 - 122678785 I
e rheMac3.chr19              60038652 58 +  64156825 I

a score=70805.000000
s hg38.chr19_GL949751v2_alt    169064 27 +   1002683 tgctgtgagctgtgattgcaccactgc
s panTro4.chr19              59101752 27 +  63644993 tgctgtgagctgtgattgcaccactgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979495 27 +  60714840 tgctgtgagctgtgattgcaccactgc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749483 27 - 106955855 tgctgtgagctgtgattgcaccactgc
i nomLeu3.chr10             I 485 C 0
s macFas5.chr19              55064283 27 +  59248254 tgctgtgagctgtgattgcaccactgc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166556 27 +  51301725 tgctgtgagctgtgattgcaccactgc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872127 27 +  50890351 tgctgtgagctgtgattgcaccactgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454198 27 +  49145316 tgctgtgagctgtgatcgcaccactgc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19657363 1091 - 122678785 I
e rheMac3.chr19              60038652 58 +  64156825 I

a score=130611.000000
s hg38.chr19_GL949751v2_alt    169091 68 +   1002683 cctccagcctgggagacagagcaag--aacctgtctcaaaaa------atatatatatgtgtgtgtgtatatatgt
s panTro4.chr19              59101779 68 +  63644993 cctccagcctgggagacagagcaag--aacctgtctcaaaaa------atatatatatgtgtgtgtgtatatatgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979522 66 +  60714840 actccagcctgggagacagagcaag--aacctgtctcaaaaa--------atatatacgtgtgtgtgtatatatgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749510 70 - 106955855 actccagcctgggagacagaacaag--accgtgtctcaaaaaa----tatatatatatgtgtgtgtgtatatatgt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60038710 51 +  64156825 TATCCAGCCTGGGAGACAGAGCAAG-------------------------ACATGTATGTGTGTGTGTATATATAT
i rheMac3.chr19             I 58 I 32
s macFas5.chr19              55064310 50 +  59248254 actccagcctgggagacagagcaag-------------------------acAtgtatgtgtgtgtgtatatatg-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166583 69 +  51301725 actccagcctgggagacagagcaag--atcctgtctcaaaaa-----tctacatgtatatatatgtgtgtatatat
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               46872154 69 +  50890351 actccagcctgggagacagcgcaag--atcctgtctcaaaaa-----tctatatgtatatatacgtgtgtatatat
i chlSab2.chr6              C 0 I 2
s calJac3.chr22              45454225 76 +  49145316 actccaacataggagacagagcaagagaccttgtctcaaaaaaaaagtgtgtgtctgtgtgtgtgtgaatatatat
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19657363 1091 - 122678785 I

a score=11518.000000
s hg38.chr19_GL949751v2_alt    169159 8 +   1002683 aaatatac
s panTro4.chr19              59101847 8 +  63644993 aaatatac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979588 8 +  60714840 aaatatac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749580 8 - 106955855 aaatacac
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47166654 8 +  51301725 aaatacac
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               46872225 8 +  50890351 aaatatac
i chlSab2.chr6              I 2 C 0
s calJac3.chr22              45454301 8 +  49145316 acatatgt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19657363 1091 - 122678785 I
e macFas5.chr19              55064360 0 +  59248254 C
e rheMac3.chr19              60038761 32 +  64156825 I

a score=17468.000000
s hg38.chr19_GL949751v2_alt    169167 26 +   1002683 acacatgtatgtatatatatgtgtgt
s panTro4.chr19              59101855 26 +  63644993 acacatgtatgtatatatatgtgtgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979596 26 +  60714840 acacgtatgtgtatatatatatgtgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749588 11 - 106955855 atacacgtgtg---------------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60038793 20 +  64156825 ------AAatctatatgtatatatat
i rheMac3.chr19             I 32 C 0
s macFas5.chr19              55064360  1 +  59248254 -------------------------t
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166662 26 +  51301725 acacgtacgtgtgtgtatagatatgt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872233 26 +  50890351 acacacacgtatgtgtgtgtgtatgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454309 26 +  49145316 atatgtgtgtgtgtatatatgtatat
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19657363 1091 - 122678785 I

a score=1007313.000000
s hg38.chr19_GL949751v2_alt    169193 331 +   1002683 gtatatatatatatattatGAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCCTGGGGAG--AA----AGGAAGGACTCTGGAA-----GGCGTTCTGC--------TTTTTCATGGCCTGGGTAGTGGTGG-----------AGAATT-TTTTTGATACTGTATATTTATATTTTAGACTC-TTTTTTGGA--TGTGTTATATTCTGCAATTTTTATAAAAGCTAAAACACATGTATTTGTAAAAAATTTGCACTTATGAAATCATTTACCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTACCACTA-----TTCCAATAATTACACCTTTATCTTATCAATGTGCAGTTTTATTTTGTCA
s panTro4.chr19              59101881 335 +  63644993 gtgtatatgtatatatTATGAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCCTGGGGAG--AACGTCAGGAAGGACTCTGGAA-----GGCGTTCTGC--------TTTTTCATGGCCTGGGTAGTGGTTG-----------AGAATT-TTTTTGATGCTGTATATTTATATTTTAGACTC-TTTTTTGGA--TGTGTTATATTCTGCAATTTTTATAAAAGCTAAAACACATGTATATGTAAAAAATTTGCACTTATGAAATCATTTACCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTACCACTA-----TTCCAATAATTACACCTTTATCTTATCAATGTGAAGTTTTATTTTGTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979622 329 +  60714840 g----tatatatatatCATAAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCATGGGGAG--AACGTCAGGAAGTACTCTGGAA-----GGCGTTCTGC--------TTTTTCATGGCCTGGGTAGTGGTTG-----------AGAATT-TTTTTGATACTGTACATTTATATTTTAGACTC---TTTTGGA--TGTGTTATATTCTGCAGTTTTTATAAAAGCTAAAACACATGTATATGTAAAAAACTTGCACTTACAAAATCATTTACCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTATGTTTA-----TTCCAATAATTACACCTTTATCTTATCAATGTGCAGTTTTATTTTGTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749599 328 - 106955855 -----tgtatatatatCATGAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCATGGGGAG--AATCTCAGGAAGGACTCTGGAA-----GGCGTTCTGC--------TTTTTCACGGCCTGGGTAGTGGTTG-----------AGAATT-TTTTTGATACTGTACATTTATATTTTAGACTC-TTTTTTGGA--TGTGTTATATTCTGCAATTTTTATAAAAGCTAAA--ACATGTATATGTATAAAATATGCACTTATGAAATCATTTACCCATGTTTTTGCTTAAGA--AAGTACTGGAACACTACCATTA-----TTTCAATAATTACACCTTTATCTTATCAATATGCAGTTTTATTTTGTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60038813 336 +  64156825 gtgtgtgtatatatatCATGAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCGTGGGGAG--AGTGTCAGGAATGACTCTGGAA-----GGCATTCTGC--------TTTTTCATGGCCTGGGTAGTGGTTG-----------AGAATT-TTTTTGATACTATACATTTATATTTTAGACTCTTTTTTTGGA--TTTGTTATATTCTGCAATTTTTATAAAAGCTAAAACACATGTATATGTATAAAATATGCACTTACGAAATCATTTATCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTACCACTA-----TTCCAATAATTTCACCTTTATCTTATCAATATGCAGTTTTATTTTGTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55064361 336 +  59248254 gtgtgtgtATATATATCATGAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCGTGGGGAG--AGTGTCAGGAATGACTCTGGAA-----GGCATTCTGC--------TTTTTCATGGCCTGGGTAGTGGTTG-----------AGAATT-TTTTTGATACTATACATTTATATTTTAGACTCTTTTTTTGGA--TTTGTTATATTCTGCAACTTTTATAAAAGCTAAAACACATGTATATGTATAAAATATGCACTTACGAAATCATTTATCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTACCACTA-----TTCCAATAATTTCACCTTTATCTTATCAATATGCAGTTTTATTTTGTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47166688 336 +  51301725 gtgtgtgtatatatatcatgaAAGGAA-----ATGAG--TATTGTAATTTCAGGA-----GTTCAGAGCATGGGGAG--AGTGTCAGGAAGGACTCTGGAA-----GGCATTCTGC--------TTTTTCATGGCCTGGGTAGTGGTTG-----------AGAatt-tttttgatactatacatttatattttagattctttttttgga--tttGTTATATTCTGCAATTTTTATAAAAGCTaaaacacatgtatatgtataaaatatgcaCTTACGAAATCATTTATCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTACCACTA-----TTCCAATAATTACACCTTTATCTTATCAATATGCAGTTTTATTTTGTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872259 336 +  50890351 gtgtgtgtgtgtATATCATGAAAGGAA-----ATGAG--TATTGTAATTTTAGGA-----GTTCAGAGCATGGGGAG--AGTGTCAGGAAAGACTCTGGAA-----ggcattctgc--------tttttcatggcctgggtagtggttg-----------agaatt-tttttgatactatacatttatattttagactctttttttgga--tttgttatattctgcaattTTTATAAAAGCTAAAACACATGTATATGTGTAAAATATGCACTTACGAAATCATTTATCCATGTTTTTGCTTAAGA--AAGTACTAGAACACTACCACTA-----TTCCAATAATTTCACCTTTATCTTATCAATATGCAGTTTTATTTTGTCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454335 331 +  49145316 gtacatacatatgAAAGAAAAAAGGAG-----ATGAGAATATTGTAATTTTAGGA-----GTTCAGAGCATGGGGAG--GATGTCAGGAAGGACTCTGGAA-----GGCGTTCTGC--------TTTTTCATGGCCTGGGTAGTAGTTG-----------AGAATT-TTTTTGCTGCTGTACATTGATATTTTAGACTC-GTTTTTTTA--TGTGTTATATTCTGCAACTTTTACAAAAGCTAAA--ACATGTATGTGTATAAAATACGCACTTTTGAAATCGTTTACCCACGGTTTTGCTTAGAACTCGGTACTGGAACACTGCCACAA-----ATCTAGT------ACCTTTATCCTACCAGTGTGCAGTTTTATTTTGTCA
i calJac3.chr22             C 0 I 17
s canFam3.chr1               19658454 358 - 122678785 GCATAAATAAAAGTAACATGAAGAAAAGGCACATGAG--TGTTGCAGTTTCAGGACAGAGGTTCAG---GTggggaggtaatgtcaggagggacacttggggctgtggaatgctgctggtggtttttttcttggcctgggtggtgtttattcaggtgtgtagcattattttttataccatacgtttatgattcagatcatttttttatatgtgtgttctgttccacCCTTTCTTAAAAAGTGGAAACACATCCA----AAGAAAATACACATTTGTGAGAT---------GCCTTTCTGCTTGAAA--TATTGCTTGAACGTTATCAGTACTGACTTTCAATATTTACGTATATACTTTAAAAATGCATAG------TTTGTTA
i canFam3.chr1              I 1091 C 0
e mm10.chr7                   3701197 2697 + 145441459 I

a score=67452.000000
s hg38.chr19_GL949751v2_alt    169524 26 +   1002683 CGTTTATTTTGTCAGTGTAATACATT
s panTro4.chr19              59102216 26 +  63644993 CGTTTATTTTGTCAGTGTAATACATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979951 26 +  60714840 CGTTTATTTTGTCAGTGTAATACATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749927 26 - 106955855 CATTTATTTTGTCGGTGTAATACATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039149 26 +  64156825 CGTTTATTTTGTCAGTGTAATACATT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55064697 26 +  59248254 CGTTTATTTTGTCAGTGTAATACATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47167024 21 +  51301725 CG-----TTTGTCAGTGTAATACATT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872595 26 +  50890351 CGTTTATTTTGTCAGTGTAATACATT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19658812 26 - 122678785 CATAGATTTTGTTACTGAAATACAGT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e calJac3.chr22              45454666 17 +  49145316 I

a score=666814.000000
s hg38.chr19_GL949751v2_alt    169550 311 +   1002683 CACATGGTGAGTctgggcgtggtggcttatgcttgtaatcccagcactttgggagaccaaggcgggcggatcatgaggtcaggagttccagagcatcctggccaacatgg------cccgcctctatgaaaaatacaaaaatt-agccgggcgtggtggcgggcgcctgtaatcctagctactccggaggctgaggcaggagaatcacttgaatctgggaggtggaggttgcagtgagccaaggtcacgccactgcactccagtctgggcgacagagctagacactgtctcaaaaaaacaaaaacaaacaaaa---aCTTC
s panTro4.chr19              59102242 311 +  63644993 CACATCATGAggctgggcgtggtggcttatgcttgtaatcccagcactttgggagaccaaggcgggcggatcatgaggtcaggagttccagagcatcctggccaacatgg------cccacctctatgaaaaatacaaaaatt-agccgggcgtggtggcgggcgcctgtaatcctagctactccggaggctgaggcaggagaatcacttgaatctgggaggtggaggttgcagtgagccaaggtcacgccactgcactccagtctgggcgacagagctagacactgtctcaaaaaaacaaaaacaaacaaaa---aCTTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55979977 311 +  60714840 CACATGGTGAggctgggcgtggtggcttatgcttgtaatctcagcactttgggagacgaaggcgggcggatcacgagatcaggagttcgagaccatcctggccaacatgg------cccacctctacgaaaaatacaaaaatt-agctgggcgtggtggcaggcgcctgtaatccctgctactcgggaggctgaggcaggagaatcacttgaatctgggaggtggaggttgcagtgagccaaggtcgcgccactgcactccagtctgggtgacagagctagacactgtctcaaaaaaacaaaaacaaacaaaa---aCTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102749953 317 - 106955855 CACACGGTGAggccgggcatggtggctcatgcttgtaatcccagcactttgggaggccaaggcgggcggatcacaaggtcaggagttcgagaccatcctggccaacatggtgaaaccctgcctctacgaaaactacaaaaatt-agctgggcatggtggcgggcgcctgtaatcccagctactcgggtggctgaggcaggagactcacttgaatctgggaggcggaggttgcagtgagccaaggtcgcgccactgcactccagtctgggcaacagagctagacactgtctcaaaaaaacaaaaacaaacaaaa---aCTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039175 314 +  64156825 CACATGGTGAggccgggcgcaggggctta------caatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagttcgacaccatcctggccaacatgctgaaaccctgcctctactaaaaatgcaaaaattgagccaggc-tggtggcgggtgcctgtaatcctagctacttgggaggctgaggcaggagaattgcttgaactcgggaggcagaggttgcagtgagccgagatcgtgccactgcactccagtctgggcgacagagctagactctgtctcaataaaacaaaaacaaacaaaaaagaCATT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55064723 315 +  59248254 CACATGGTGAggccgggcgcaggggctta------caatcccagcactttgggaggctgaggcgggcagatcacgagatcaggagttcgacaccatcctggccaacatgctgaaaccctgcctctactaaaaatgcaaaaattgagccgggcgtggtggcgggtgcctgtaatcctagctacttgggaggctgaggcaggagaattgcttgaactcgggaggcagaggttgcagtgagccgagatcgtgccactgcactccagtctgggcgacagagctagactctgtctcaataaaacaaaaacaaacaaaaaagaCATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47167045 313 +  51301725 CACATGGTGAGGCCGGGCGCA-Gggctta------caatcccagcactttgggaggccgaggcgggcagatcacggaGGTCGGAgttcgacaccatcctggccaacatggtgaaaccccgcctctactaaaaatgcaaaaatt-agccgggcgtggtggcgggtgcctgtaatcctagctactcggcaggctgaggcaggagaattgcttgaactcgggaggcagaggttgcagtgagccgagatcgtgctactgcactccagtctgggcgacagagctagactctgtctcaaaaaaacaaaaacaaacaaaaaagacatt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872621 310 +  50890351 CACATGGTGAggccgggcgcaggggctta------caatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggatttcgacaccatcctggccaacatgctgaaaccctgcctctactaaaaatgcaaaaatt-agccgggcgtggtggcgggtgcctgtaatcctagctacttgggaggctgaagcaggagaattgcttgaactcaggaggcagaggttgcagtgagccgagatcgtgccactgcactccagtctgggcgacagagctagactctgtctcaaaaaaacaa----aaacaaaaaagaCATT
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19658838   0 - 122678785 C
e calJac3.chr22              45454666  17 +  49145316 I

a score=23180.000000
s hg38.chr19_GL949751v2_alt    169861 7 +   1002683 CACATGG
s panTro4.chr19              59102553 7 +  63644993 CACATGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980288 7 +  60714840 CACATGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750270 7 - 106955855 CATATGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039489 7 +  64156825 CACATGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55065038 7 +  59248254 CACATGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47167358 7 +  51301725 caCATGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46872931 7 +  50890351 CACATGG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19658838 7 - 122678785 CACATGG
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e calJac3.chr22              45454666 17 +  49145316 I

a score=185482.000000
s hg38.chr19_GL949751v2_alt    169868 59 +   1002683 TAA-AATTCTGGGGCTGAAAGTCTCCACCTCTAGTTCTTCCATTTCTTCCCCCCATGTTT
s panTro4.chr19              59102560 59 +  63644993 TAA-AATTCTGGGGCTGAAAGTCTCCACCTCTAGTTCTTCCATTTCTTCCCCCCATGTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980295 59 +  60714840 TAA-AATTCTGGGGCTGAAAGTCTCCACCTCTAGTTCTTCAATTTCTTCCCCCCACGTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750277 59 - 106955855 TAA-AATTCTGGGGCTGAAAGTCTCCACCTCTAGTTCTTCAATTTCTTCCCCCCATGTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039496 59 +  64156825 TAA-AGTTCTGGGGCTGAAAGTCTCCACTGCTAGTTCTTCAATTTCTTCCCCCCATGTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55065045 59 +  59248254 TAA-AGTTCTGGGGCTGAAAGTCTCCACCGCTAGTTCTTCAATTTCTTCCCCCCATGTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47167365 59 +  51301725 TAA-AGTTCTGGGGCTGAAAGTCTCCACTGCTAGTTCTTCAATTTCTTCCCCCCATGTTT
i papAnu2.chr19             C 0 M 1926
s chlSab2.chr6               46872938 59 +  50890351 TAA-AGTTCTGGGGCTGAAAGTCTCCACCGCTAGTTGTTCAATTTCTTCCCCCCATGTTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454683 58 +  49145316 TAG-AATTCTGGGGCTGAAAGTCTTTATTTCTAGTTCTT-AATTTCTTTTCCCTACATAt
i calJac3.chr22             I 17 I 30
s canFam3.chr1               19658845 47 - 122678785 TAATGATTCTGGAGCTGAAAGTGTCTATCTCTAGTTTCCCAATGTCT-------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I

a score=335456.000000
s hg38.chr19_GL949751v2_alt    169927 141 +   1002683 CATTCTTTCTCTTTTTTGTgtgaattgagcagcctctggaaccagaataggtttagagagactccCA---TCTCCCCTCTTTCTTGCCATTCCCAGTAAACAGACTTCATAGAATCTCA-ATTTCCTGTAAGTTTAGATTAATTT
s panTro4.chr19              59102619 141 +  63644993 CATTCTTTCTCTTTTTTGTgtgaattgagcagcctctggaaccggaataggtttagagagactccCA---TCTCCCCTCTTTCTTGCCATTTCCAGTAAACAGACTTCATAGAATCTCA-ATTTCCTGTAAGTTTAGATTAATTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980354 139 +  60714840 CATTCTTTCTCTTTTTTGTgtgaattgagcagcctc--gaaccggaataggtttagagagactccCG---TCTCCCCTCTTTCTTGCCATTCCCAGTAAACAGACTTCATAGAATCTCA-ATTTCCTGTAAGTTTAGATTAATTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750336 141 - 106955855 CATTCTTTCTCTTTTTTGcgtgaattgagcagcctctggaaccagaataggtttagagagactccCA---TCTCCCCTCTTTCTTGCCATTCCCAGTAAACAGACTTCATAGAATCTCA-ATTTCCTGTAAGTTTAGATTAATTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039555 140 +  64156825 CATTCTTTCTCTTTTTTGTgtgaattgagcagcctctagaaccagaataggtttagagagactccCA---TCTTCCCTCTTTCTTGCCATTCCCAGTAAACAGAC-TCATAGAATCTCA-ATTTCCTTTAAGTTTAGATTAATTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55065104 140 +  59248254 CATTCTTTCTCTCTTTTGTgtgaattgagcagcctctagaaccagaataggtttagagagactccCA---TCTTCCCTCTTTCTTGCCATTCCCAGTAAACAGAC-TCATAGAATCTCA-ATTTCCTTTAAGTTTAGATTAATTT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46872997 140 +  50890351 CATTCTTTCTCTTTTTTGTgtgaattgagcagcctctagaaccagaataggtttagagagactccCA---TCTCCCCTCTTTCTTGCCATTCCCAGTAAACCGAC-TCATAGAATCTCA-ATTTCCTTTAAGTTTAGATTAATTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454771 136 +  49145316 TTCTCTCTCTCTCTCTTCTgtgaattgagcggcctctggaatcagaataggttttgagagacttcCA---TCTCCCCACTTTCTTGACATTACCAGTAAACAGACTTCATAGAATCTCA-ATTTCCTAAAGGT-----TTAATTT
i calJac3.chr22             I 30 C 0
s canFam3.chr1               19658892  87 - 122678785 ----------------------------------------------------------GGGCTGCCAATTTCTTCTTTCTTTTCTATACTTCTCAGTAAACAAATTTGCTAGAACCTCATATTTCCTGTAAGCTTAGATTAATTT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=228705.000000
s hg38.chr19_GL949751v2_alt    170068  99 +   1002683 AAAATATGACACTGggccaggcgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcagat-------------gagtttgagatcagcctggccaat
s panTro4.chr19              59102760  99 +  63644993 AAAATACGACACTGggccaggcgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcagat-------------gagtttgagatcagcctggccaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980493  99 +  60714840 AATATACGACATTGggctaggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcagat-------------gagtttgagatcagcctggccaac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750477 112 - 106955855 AAAATACGACACTGggccgggcatggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcagatcacctgaggtcaggagtttgatatcagcctggccaac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039695 112 +  64156825 AAAATATGATACTGggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgtggtaggcagatcacctgaggtcaggaatttgagaccagcctggccaac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55065244 112 +  59248254 AAAATATGATACTGggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgtggtaggcagatcacctgaggtcaggaatttgagaccagcctggccaac
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46873137 112 +  50890351 AAATTGTGATACTGggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgtggtaggcagatcacctgaggtcaggaatttgagaccagcctggccaac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45454907 112 +  49145316 AAAATACGACACTGggctgggtgtggtggctcccgcctgtaatcctagcactttgggagtctgaggtgggtggatcacctaaggtcaggagtttgacactagcctggccaat
i calJac3.chr22             C 0 I 1042
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19658979   0 - 122678785 C
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=445780.000000
s hg38.chr19_GL949751v2_alt    170167 210 +   1002683 atggtgaaaccccatctctactaaaaatacaaaaaaaaaaattagccgggcgtggtggcatgcgcctgtactcctagctactcaggagcctaaggcaggagaatcacttgaatccaggaggcagaggttgcagtgagccaagatcgcactactacactccagcctgggcaacaagagctaaact-ccatctc-aaaaaaataaaaagaaaag
s panTro4.chr19              59102859 209 +  63644993 atggtgaaaccccatctctactaaaaatac-aaaaaaaaaattagccgggcgtggtggcatgcacctgtactcctagctactcaggagcctaaggcaggagaatcacttgaatccaggaggcagaggttgcagtgagccaagatcgcactactacactccagcctgggcaacaagagctaaact-ccatctc-aaaaaaataaaaagaagag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980592 209 +  60714840 atggtgaaaccccctctctactaaaaata--gaaaaaaaaattagccaggcgtggtggcacgcgcctgtactcctagctactcaggagcctaaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagattgcaccactacactccagcctgggcaacaagagctaaactcccatctc-aaaaaaataaaaagaaaag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750589 207 - 106955855 atggtgaaaccccatctctactaaaaata--caaaaaaaaattagccgggtgtggtagcacgtgcctgtactcctagctactcaggaggctaaggcaggagaatcacttgaacccaggaggcagaggttgtactgagccaagatcacactactacactccagcctgggcaacaagagct-aact-ccgtctc-aaaaaaataaaaagaaaag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60039807 209 +  64156825 atggtaaaatcccatctctactaaaaata--caaaaaaaaattagctgggcgtggtggtgcacacctgtactcctagctactcaggagcctaaggcaggagaatcgcctgaacccaggaggcagaggttgcagtgagcccagatcgtgccactgtactccagcctgggcaacaagagctaaact-ccatctcaaaaaaaaaaaaaagacaag
i rheMac3.chr19             C 0 I 23
s macFas5.chr19              55065356 207 +  59248254 atggtaaaatcccatgtctactaaaaata--caaaaaaaaattagctgggcgtggtggtgcacacctgtactcctagctactcaggagcctaaggcaggagaatcacctgaacccaggaggcagaggttgcagtgagccaagatcgtgccactgtactccagcctgggcaacaagagctaaact-ccatctc--aaaaaaaaaaaagacaag
i macFas5.chr19             C 0 I 14
s chlSab2.chr6               46873249 205 +  50890351 atggtaaaatcccatctctactaaaaata--caaaaaaaaattagctgggcatggtggtgcacacctgtactcctagctactcaggagcctaaggccggagaatcacctgaacccaggaggcagaggttgcagtgagccaagattgtgccactgtactccagcctgggcaacaagagctaaact-ccatctc---aaaaaaaaaaagacaa-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45456061 205 +  49145316 atggtgaaaccccgtctctactaaaaata--c---aaaaaattagctgggcattgtggcgcgtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgtggtgagccgagattgcgccattgcactccagcctgggtaacaggagcgaaact-ccgtctc-aaaaaaaaaaaaggaaaag
i calJac3.chr22             I 1042 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19658979   0 - 122678785 C
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=704.000000
s hg38.chr19_GL949751v2_alt    170377 2 +   1002683 aa
s panTro4.chr19              59103068 2 +  63644993 aa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980801 2 +  60714840 aa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750796 1 - 106955855 -a
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55065577 2 +  59248254 AG
i macFas5.chr19             I 14 C 0
s chlSab2.chr6               46873454 1 +  50890351 -g
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19658979 0 - 122678785 C
e calJac3.chr22              45456266 0 +  49145316 C
e papAnu2.chr19              47167424 1926 +  51301725 M
e rheMac3.chr19              60040016 23 +  64156825 I

a score=1426.000000
s hg38.chr19_GL949751v2_alt    170379 14 +   1002683 aaaaaa-TGACGCTA
s panTro4.chr19              59103070 14 +  63644993 aaaaaa-TGACGCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980803 14 +  60714840 aaaaaa-TGACGCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750797 14 - 106955855 aaaaaa-TGGCACTA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55065579  7 +  59248254 AAAAAAG--------
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46873455  6 +  50890351 aCAGTA---------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45456266  6 +  49145316 ---------aCACTA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19658979 14 - 122678785 AAAACA-GGACACTA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e papAnu2.chr19              47167424 1926 +  51301725 M
e rheMac3.chr19              60040016 23 +  64156825 I

a score=398898.000000
s hg38.chr19_GL949751v2_alt    170393 152 +   1002683 ACCCCTGTCTGGCCAATACTC---TCTTTGTGCCTGCTTCATAATTGGCTTTGTAAGTCTATTCTCCACCCTTTCTCCTCTCTACAACAAAGTACTTAGAAGTCTC-------ATTCCCTCTGTCATGAGTCTCTCCTCTGAAAAGTTCCTCATTTAAAACT
s panTro4.chr19              59103084 155 +  63644993 ACCCCTGTCTGGCCAATACTCTCTTCTTTGTGCCTGCTTCATAATTGGCTTTGTAAGTCTATTCTCCACCCTTTCTCCTCTCTACAACAAAGTACTTAGAAGTCTC-------ATTACCTCTGTCATGAGTCTCTCCTCTGAAAAGTTCCTCATTTAAAACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980817 155 +  60714840 ACCCCTGTCTGGCCAATACTCTCTTCTTTATGCCTGCTTCATAAGTGGCTTTGTAAGTCTATTCTCCACCCTTTCTCCTCTCTACAACAAAATACTTAGAAGTCTC-------ATTATCTCTGTCATGAGTCTCCCCTCTGAAAAGTTCCTCATTTAAAATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102750811 155 - 106955855 ACCCCTGTCTGGCCAATACTCTCTTCTTTGTGCCTCCTTCATAAGTGGCTTTGTAAGTCTATTCTCCACCCTTTCTCCTCTCTACAATAAAGTACTTAGAAGTCTC-------ATTACCTCTGTCATGAGTCTCCCCTCTGAAAAGTTCCTCATTTAAAACT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60040039 152 +  64156825 ACCCCTGCCTGGCCAATACTC---TCTTTGTGCCTGCTTCATAAGTGGCTTTGTATGTCTATTCTCCACCCTTTCTCCTGTCTACAACAAAGTACTTAGAAGTCTC-------ATTACCTCTGTCAGGAGTCTCCGCTCTGAAATGTTCCTCATTTAAAACC
i rheMac3.chr19             I 23 C 0
s macFas5.chr19              55065586 152 +  59248254 ACCCCTGCCTGGCCAATACTC---TCTTTGTGCCTGCTTCATAAGTGGCTTTGTATGTCTATTCTCCACCCTTTCTCCTGTCTACAACAAAGTACTTAGAAGTCTC-------ATTACCTCTGTCAGGAGTCTCCGCTCTGAAATGTTCCTCATTTAAAACC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46873461 155 +  50890351 ACCCCTGCCTGGACAATACTCTCTTCTTTGTGCCTGCTTCATAAGTGGCTTTGTATGTCTATTCTCCACCCTTTCTCCTATCTACAACAAAGTACTTAGAAGTCTC-------ATTACCTCTGTCACGAGTCTCCGCTCTGAAATGTTCCTCATTTAAAACT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45456272 151 +  49145316 ACCTCTGTCTGGCCAAGACTA--ATCTTTGTGCCTGTTTGATAAGCGGC-TTGTAAGTCTATGCTCTACCCTTTCTCCTCTCTACAAC-AAGTAATTAGATGTCTC-------AGTACCTCTGTCATGAGCCTCTCCTCTGAAAAGTTTCTCATTCAAAACT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19658993 159 - 122678785 ATCCCTGCCTCATTAACACTCTGTTCTTTGTGCCTCTTTGATAACTGGC-TTGCAAATCTATTCTCCAGGCTCTCTCTTCTCTACAACAAAGTACTTAGTTGACTCAGTACTGAGTACCTCTGTCTTGAGTCTTCCCTC--AAAAATTCCTCATTAAAAACT
i canFam3.chr1              C 0 I 64854
e mm10.chr7                   3701197 2697 + 145441459 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=820469.000000
s hg38.chr19_GL949751v2_alt    170545 383 +   1002683 CCTGTggccagatgtggtggctcagacctgtaatcctagcactttgggaggccaaggtgggaagatcagttgagccgctgagctcaggagtttgagaccagccttggctgaacatagtgagacctcatctcatctctattt-aaaacaaacaaacaaaAAAAAACTTTTGTGACTGGTGTccccccatgttgtcagtcaacaaattctataggtgccatgttcaaagcactgtggatcca-cagttaggcccc-accctccaccttcactgccagtatcttagaaaaaccaaaccatggctcatttgatattgatagcttcctaactcatcccctgccttccattcttgcccctctgttgtctgttttcaacagagcagccagaat
s panTro4.chr19              59103239 379 +  63644993 CTTGTggccagatgtggtggctcagacctgtaatcctagcactttgggaggccaaggtgggaagatcagttgagccgctgagctcaggagttcgagaccagccttggctgaacatagtgagacctcatctcatctctattt-aaaacaaacaaac----aaaCACTTTTGTGACTGGTGTccccacatgttgtcagtcaacaaattctgtaggtgccgtgttcaaagcactgtggatcca-cagtttcgcccc-accctccaccttcactgccagtatcttacaaaaaccaaaccatggctcgtttgatattgatagctttctaactcatcccctgccttccattcttgcccctctattgtctgttttcaacagagcagccagaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55980972 382 +  60714840 CTTGTggccagatgtggtggctcagacctgtaatcctagcactttgggaggccaaggtgggaagatcagttgagcagttgagctcaggagttcgagaccagccttggctgaacatagtgagacttcatctcatctctatttaaaaacaaaaaaac--aaAAAAACTTTTGTGACTGGTGTccccacatgttgtcagtcaacaaattctataggtgccatgttcaaagcactgtggatcca-cagtttggcccc-accctccaccttcactgccagtatcttagaaaaaccaaaccatggctcatttgatcttgatagcttcctaactgatcccctgccttctattcttgcccctctattgtctgttttcaacagagcagccagaat
i ponAbe2.chr19             C 0 I 1
s nomLeu3.chr10             102750966 381 - 106955855 CTTGTggccagatgtggtggctcagacctataatcctagcactttgggaggccaaggtgggaagatcagttgagcaggtgagctcaggagttagagaccagccttggctgaacatagtgagacctcatctcatctctattt-aaaaaaaaaaaaa--aaaAAAAAGTTTGTGACTGGTGaccccacatattgtcagtcaacaaattctataggtgccatgttcaaagcactgtggatcca-cagtttggcccc-accctccaccttcactgccagtatcttagaaaaaccaaaccatggctcatttggtcttgatagcttcctaactcatcccctgccttctattcttgcccctctattgtttgttttcaacagagcagccagaat
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60040191 366 +  64156825 CTTGTggctgggtgtggtggctcagacctataatcctagcagtttgggaggccaaggtgggaagatcagt--------tgagctcaggagtttgagaccagcctgggctgaacatagtgagacctcgtctcgtctctattt-aa-------aaac--aaaaaaaCTTTTGTGACTGGTGTccccacatgttgtcagtcaacaaattctataggtgccatgttcaaagcactgtggatcca-cagtttggcccc-accctccaccttcactaccagcatcttagaaaaaccgaaccatggctcatttgatcttgatagcttcctaactcatgccctgcctgctattcttgcccctctattgtctgttttcaacagagcagccagaat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55065738 366 +  59248254 CTTGTggctgggtgtggtggctcagacctataatcctagcagtttgggaggccaaggtgggaagatcagt--------tgagctcaggagtttgagaccagcctgggctgaacatagtgagacctcgtctcgtctctattt-aa-------aaac--aaaaaaaCTTTTGTGACTGGTGTccccacatgttgtcagtcaacaaattctataggtgccatgttcaaagcactgtggatcca-cagtttggcccc-accctccaccttcactaccagcatcttagaaaaaccgaaccatggctcatttgatcttgatagcttcctaactcatgccctgcctgctattcttgcccctctattgtctgttttcaacagagcagccagaat
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46873616 367 +  50890351 CTTGTggctgggtgtggtggctcagacctgtaatcctagcactttgggaggccgaggtgggaagatcagt--------tgagctcaggagtttgagaccaccctgggctgaacatagtgagacctcgtctcgtctctattt-aa-------aaac--aaaaaaGCTTTTGTGACTGGTGTccccacatgttgtcagtcaacaaattctataggtgccatgttcaaagcactgtggatccaccagtttggccct-accctccaccttcactgccagcatcttagaaaaaccgagccatagctcatttgatcttgatagcttcctaactcatgccctgcctgctattcttgcccctctattgtgtgttttcaacagagcagccagaat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45456423 347 +  49145316 TTTGTggctgggtgtggtggctcaggcctgtaatcctagcactttgggaggccagggtgggaagatcagt--------tgagctcaggagttcgacaccagcctgagctgaacatagtgagac-----ctcgcctctattt-aa----aaaaaaa--aagaaaACTTTTGTGACTGATGTTTc--catgtcatcagtcaacaaattctgtaggtgccatgttct-----------------aagtttggcccctgccctccaccttcactggcagcatcttagaaaaaccaaaccattgctcatttgatcctaatagtgtcctaactcatcccctgccttctagccttgcccctctgttgactgttttcaacagagcagccagaat
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=8022.000000
s hg38.chr19_GL949751v2_alt    170928 4 +   1002683 catc
s panTro4.chr19              59103618 4 +  63644993 catc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102751347 4 - 106955855 catc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60040557 4 +  64156825 catc
i rheMac3.chr19             C 0 I 527
s macFas5.chr19              55066104 4 +  59248254 catc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46873983 4 +  50890351 catc
i chlSab2.chr6              C 0 I 535
s calJac3.chr22              45456770 4 +  49145316 catc
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e ponAbe2.chr19              55981354 1 +  60714840 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=1508.000000
s hg38.chr19_GL949751v2_alt    170932 5 +   1002683 gtttt
s nomLeu3.chr10             102751351 5 - 106955855 atttt
i nomLeu3.chr10             C 0 I 3534
s macFas5.chr19              55066108 5 +  59248254 atatt
i macFas5.chr19             C 0 I 522
s calJac3.chr22              45456774 5 +  49145316 atatt
i calJac3.chr22             C 0 I 1137
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e ponAbe2.chr19              55981354 1 +  60714840 I
e chlSab2.chr6               46873987 535 +  50890351 I
e papAnu2.chr19              47167424 1926 +  51301725 M
e rheMac3.chr19              60040561 527 +  64156825 I
e panTro4.chr19              59103622 0 +  63644993 C

a score=28885.000000
s hg38.chr19_GL949751v2_alt    170937 319 +   1002683 tttttttgtttttttttttttttttttttttgaggcggagtctcgctgtcgcccaggctggagtgcagtggcgcgatctctgctcactgcaagctccgcctcccggattcacgccattctcctgcctcagcctccctagtagccgggactacaggcgcccgccacctcacctggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctcccaaagtgctggggttacaggcgtgagccaccgcgcccggccagaatcatc
s panTro4.chr19              59103622 312 +  63644993 -------gtttttttttttttttttttttttgaggcggagtctcgctgtcgcccaggctggagtgcagtggcatgatctctgctcactgcaggctccgccccccgggttcacgccattctcctgcctcagcctccctagtagctgggactacaggcgcccgccacctcacctggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctggggttacaggcgtgagccaccgcgcccggccagaatcatc
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e ponAbe2.chr19              55981354   1 +  60714840 I
e calJac3.chr22              45456779 1137 +  49145316 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e chlSab2.chr6               46873987 535 +  50890351 I
e papAnu2.chr19              47167424 1926 +  51301725 M
e macFas5.chr19              55066113 522 +  59248254 I
e rheMac3.chr19              60040561 527 +  64156825 I

a score=175752.000000
s hg38.chr19_GL949751v2_alt    171256 664 +   1002683 atattaaaagataagtcagaccatgtcacagctctgtctaaaactttcctggagttttccatctcagagtaaaactcaaaggtcctactttgcagcttcctcatgaactggccATGTGCATtctcttccttgcttattattattattattatttattttttttatttttgagacagagtcttgctctgttgcccaggctggagtgcagtggcacaatctcggcccactgcagcctctgcctcctgggttcaagtgggttcaagcgattctcccacctcagcctcccaagtacctgggattacaggcgcctgccaccacgtcaggctaattttttgtattttagtagagacagggtttcaccataattgcccaggctcgaactcctgagctcaggcaatccgcccacctcagcctcccaaagtgctaggattatagacatgagccaccgtgcccggccagctttgttcctctttactgctggatattccattgtatggacataaccccattttatttatccattcatcaggtgattggcatttgtttctagttaaggacAAGGTTTTGGTTTTGGTTTTTGttttatttacccttgttcatgcagtatccccaggtccaagaacagttcctggcacac----agcagtcaatacattgttgctaaataa
s panTro4.chr19              59103934 665 +  63644993 atattaaaagataagtcagaccatgtcacagctctgtctaaaactttgctggagttttccatctcaaagtaaaactcaaaggttccactttgcagcttcctcatgaactggccATGTGCATTCTCTTCCTTGCttattattattattattat---tattttttatttttgagacagagtcttgctctgttgcccaggctggagtgcagtggcacaatctcggcccactgcagcctctgcctcctgggttcaagtgggttcaagcgattctcccacctcagcctcccaagtatctgggattacaggcgcctgccaccacgtcaggctaattttttgtattttagtagagacggggtttcgccataattgcccaggctcgaactcctgagctcaggcaatccgcccacctcagcctcccaaagtgctaggattatagacatgagccaccgtgcctggccAGctttgttcctctttactgctggatattccattgtatggacataaccccattttatttatccattcaccaggtgattggcatttgtttctagttaaggacAAGGTTTTGGTTTTTCTTTTTGttttatttacccctgttcatgcagtatccccaggtccaagaacagttcctggcacacagtaagcagtcaatacattgttgctaaataa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55981355 657 +  60714840 atattaaaagataagtcagaccatgtcacagctctgtctaaaactttcctggagttttccgtctc--agtaaaactc--aggtccCACTTTGCAGCTTCCTCATGAACTGGCCATGTGCATCCTCTTCCTTGCttattattattatttttat-------ttttatttttgagacagagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagcccactgcagcctctgcctcctgggttcaagtggattcaagcgattctcccacctcagcctcccaagtacctgggattacaggcgcctgccaccacgtcaggctaattttttgtattttagtagagacagggtttcaccataattgcccaggctcgaactcctgagctcaggcaatccacccacctcagcctcccaaagtgctaggattataggcatgagccaccatgcccggccAGctttgttcctctttactgctgaatattccattgtatggacataaccccattttatttatccattcaccaggtgattggcatttgtttctagttaaggacAAGGTTTTGGTTTTGGTTTTGGttttatttacccttgttcatgcagtatccccaggtccaagaacagttcctggcacatagtaagcagtcaatacattattgctaaataa
i ponAbe2.chr19             I 1 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e calJac3.chr22              45456779 1137 +  49145316 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e chlSab2.chr6               46873987 535 +  50890351 I
e papAnu2.chr19              47167424 1926 +  51301725 M
e macFas5.chr19              55066113 522 +  59248254 I
e rheMac3.chr19              60040561 527 +  64156825 I

a score=368666.000000
s hg38.chr19_GL949751v2_alt    171920 773 +   1002683 atgagtGGCTTAAACTATAATTTTTAAATCAG----GGCTGAGACAATTTGGAAATTATAATTTCTCC---TACATGACTTTCTAAGCATATTTTAAATAAATATACATACGTTAAGGTCATTTTTATTAATGAAAATTGTAGCATACTATGCACACTTCTGCATCTTGCTTATTGGATATGCCCAGGCTTGTCTCATTTTTGCCAACAGCTACATGGTTTTGCGTCCTATGGATGGGGCATAATTAGATTTTATTACACTTGTACAAAAG----GAAAGGAATTCAGCTCCCCAAGCATGCCCAGCTGGTCCTTGGCAACCCATGATGGAAACCAAGGGTTCCTCTTATATTACCCGTGCTCCTTTCAGAGAGGAAGGGCTAGAGGGCTCCAGCCTGAGTGAGAGAGAGAGAGGAGGAAGCATGAGGGGTTTGTGGAAGAGGGCCTGGTGCCATATGACTGGACCATGCTTCTGAAGAGGATCAGGGTGAGGCCAGATCTCATcagttgacccttgagcaacatgggtctgaactgctcgggtccacttttatgcagattGAAAAAAGTAaaggttacacagagcatgcctgcctctcctgctttgccttttacctcctccacctctggcaccctgagacagcaagaccaaaccctcctcttctttctgcacctctgcctactcagaatgaagacaaggatgaagacctttatgatgatccacttccacttaatgaatagtaaatatatt--ttctcttttttagaattttcttaatattttctt
s panTro4.chr19              59104599 772 +  63644993 atgagtGGCTTAAACTATAATTTTTAAATCAG----GGCTGAGACAATTTGGAAATTATAATTTCTCC---TACATGACTTTCTAAGCatattttaaataaatatatataCGTTAAGGTCATTTTTATTAATGAAAATTGTAGCATACTATGCACACTTCTGCATCTTGCTTATTGGATATGCCCAGGCTTGTCTCATTTTTGCCAACAGCTACATGGTTTTGCGTCCTATGGATGGGGCATAATTAGATTTTATTACACTTGTACAAAAG----GAAAGGAATTCAGCTCCCCAAGCATGCCCAGCTGGTCCTTGGCAACCCATGATGGAAACCAAGGGTTCCTCTTATATTACCCATGCTCCTTTCAGAGAGGAAGGGCTAGAGGGCTCCAGCCTGAGTGAGAGAGAGAGAGGAGGAAGCATGAGGGGTTTGTGGAAGAGGGCCCGGTGCCATATGACTGGAGCATGCTTCTGAAGAGGATCAGGGTGAGGCCAGATCTCATcagctgacccttgagcaacatgggtctgaactgctcaggtccacttttatgcagattGAAAGAAGTAaaggttacacagagcatgcctgcctctcctgctttgccttgtacctcctccacctctggcaccctgagacagcaagaccaaaccctcctcttccttctgcacctctgcctactcagaatgaagacaaggatgaagacctttatgatgatccacttccacttaatgaatagtaaatatatt--ttctcttttttagaattttcttaatattttc-t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55982012 773 +  60714840 atgagtGGCTTAAACTATAATTTTTAAATCAG----GGCTGAGACAATTTGGAAATTATAATTTCTCC---TACACGACTTTCTAAGCATATTTTAGATAAATATACATACGTTAAGGTCATTTTTATTAATGCAAATTGTAGCATACTATGCACACTTCTGCAGCTTGCTTATTGGATATGCCCAGGCTTGTCTCATTTTTGCCAACAGCTACATGGTTTTGCGTCCTATGGATGGGGCGTAATTAGATTTTATTACACTTGTACAAAAG----GAAAGGAATTCAGCTCCCCAAGCATGCCCAGCTGGTCCTTGGCAACCCATGATGGAAACCAAGGGTTCCTCTTATATTACCCGTGCTCCTTTCAGAGAGGAAGGGCTAGAGGGCTCCAGCCTGAGTGAGAGAGAGAGAGGAGGAAGCATGAGGGGTTTGTGGAAGAGGGCCCGGTGCCATATGACTGGACCATGCTTCTGAAGAGGATCAGGGTGAGGCCAGATCTTATcagctgacccttgagcaacatgggtctgaactgctcaggtccacttttatgcagattGAAAAAAGTAaaggttacacagagcatgcatacctctcctgctttgccttttacctgctccacctctggcaccctgagacagcaagatccaaccctcctcttccttctccacctctgcctactcagaatgaagacaagaatgaagacctttaggatgatccacttccacttaatgaatagtaaatatatt--ttctcttttttagaattttcttaatattttctt
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45457916 759 +  49145316 ATGAGTGGTTTAAACTATCATTTTTAAATCAAGGCTGGCTGAGACAACTTGGAAATTATAATTTCCCCTAATATACGACTTTCTAAGCATATTTTTAATATGCATTTATG----------ATTTTTATTAATGCAAATTGTAGCATACTATACACAC-TCAGCAGCTTGCTTTTTTGATATGCCCAGGCTTGCTTCATTTTTGCAAACAGCTACATGCTTTTGCGTCCTACAGATGGGGCATAATTAGATTGTATTACACTTGTACAAAAGAAAAGAAAGGAATTCAGCTCCCCAAGCATGCCCAACTGGTCCCTGGCAACCCATGATGGAAACCAAGGGTTCCTTTTATATTACCTGTGTGCCTTTCAGAGCAGAAGGGCCAGAGGGCTCCAGGCTGAGTGAAAG-------GGAGGAAGCATGAGGGGTTTGTGGAAGAGGGGCCAGTGCCCTGTGATTGGACCATGCTTCTGAAGAGGATCAAGGTGAGGCCCAGTCTCATcagctgacccttgagcaacatgagtctgaactgctcagctccacttac-tgcagatttAAAGAAGTAaaggtcacac--agcatgcctacctctcctgctttgccttttaccccctccacctctgccaccttgaggcagcaagaccaatccctcctcctcct------cctctgtctactcagcatgaggacaaggatgaagacctttataatgatctgcttcctcttaatgaatagtaaatggattcatgtcttttctcaaagttttcttaatattttatt
i calJac3.chr22             I 1137 I 429
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e chlSab2.chr6               46873987 535 +  50890351 I
e papAnu2.chr19              47167424 1926 +  51301725 M
e macFas5.chr19              55066113 522 +  59248254 I
e rheMac3.chr19              60040561 527 +  64156825 I

a score=562914.000000
s hg38.chr19_GL949751v2_alt    172693 1483 +   1002683 ttt----------tttttttttttgagacgaagtctcgctctgtcacccaagctggagtgcagtggcgcgatcttagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccccggtagctgggactacaggtgcctgccaccacgcccggcaaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcct--gacctggtgatccgcccgccttagcctcccaaagtgctggggtaacaggcatgag--ccatcacgcccggccaatattttcttttctctagcttaattcatcataggaatacagaatataatacatatagcgtataaaatatgtgttaattgactatgttattggtaaggcttccagtcaactacgagtaatgttttttttaa------atcctgagacagtgtcttgctctgccagctgggctggggtgcaggggcatgatcttagttcgctgctgcctcaacctccttgactcaagcagtcctcccaccacagcctcccaagtagctggaactacgggcacacaccaccacacccagtta--------atttttctgttttctgtagagtctgggttttgc-cgtgttgcccaggctgg-------------------------------tcttgaactcctgggctcaagtgctctgcccacctcagcttcccaaatcccacctggggttacaggtgtgagccacggtgcctggcctagtagttaagttttggggaagtcaaaagttatatgcagattttctttcttgatttttttttttttttttttgaggcagtcttgctctgtcgcccaggatggagtgcagtggtgcgatctcggctcactgcaatctccacgtcctgggttcaagcgatgctcttgcctcaacctcctaagtagctgggattacaggcacctgccaccacgcct-gcctaatttttgtatttttagtagagaccaggttttgtcatgttggccaggctggtctcgaactcctgacctcagttgatccgccggccttggccttccacatagtgctgggattacaggcgtgaggcaccgcgcccagcctatatggaggttttcggctgagctgggggtcagtgcccctcgcccccagactgtaca-gagtcagctgTGTTAAGAtattaagcaccttcagtacacaagactctgtgctggttttcttttctttt-ttttttttttttactctaaatcatcaaaccctatgaggaaagtcctgttactttctcccatttagcactcttgaagaggctaatttgcctaagatcaagagctcgtcagtgactgctgaggttcaaacgcagatcttttttaagacttgagaaccTACAGGTTCAACCACCATTATAAAACCATCTCTGTAATCACGAGGCACCCGGAATTTGTGGAGCTTGGACTTCATCCTGAAGGGAGTGAAAACTTATGGA--AGTTTTTTCCTTCCACGTTTCCCCCTTCCAGAT
s panTro4.chr19              59105371 1482 +  63644993 ttt----------tttttttttttgagacgaagtctcgctctgtcacccaagctggagtgcagtggcgcgatcttagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccccagtagttgggactacaggcgcctgccaccacgcccggctaattttttgtatgtttagtagagatggggtttcaccatgttagccaggatggtctcgatctcct--gacctggtgatccgcccgccttagcctcccaaagtgctgggattacaggcatgag--ccatcacgcccggccaatattttcttttctctagcttaattcatcataggaatacagaatataatacatatagcgtataaaatatgtgttaattgactatgttattggtaaggcttccagtcaactacgagtaattttttttttaa------atcctgagacagtgtcttgctctgccagctgggctggggtgcaggggcatgatcttagttcactgctgcctcaacctccttgactcaagcagtcctcccaccacagcctcccaagtagctggaactacgggcacacgccaccacacccagtta--------atttttctgttttctgtagagtctgggttttgc-cgtgttgccctggctgg-------------------------------tcttgaactcctgggctcaagtgctctgcccatctcagcttcccaaatcccacctggggttacaggtgtgagccacggtgcctggcctagtagttaagttttggggaagtcaaaagttatatgcagattttctttctt--tctttctttctttttttttgaggcagtcttgctctgtcgcccaggatggagtgcagtggtgcgatctcggctcactgcaatctccacgtcctgggttcaagcgatgctcttgcctcaacctcctaagtagctgggattacaggcacctgccaccacgcct-gcctaatttttgtatttttagtagagaccaggttttgtcatgttggccaggctggtctcgaactcctgacctcagttgatccgccggcctcggccttccacatagtgctgggattacaggcgtgaggcaccgcgcccagcctatatggaggttttcggctgagctgggggtcagtgcccctcgcccccagactgtaca-gagtcagctgTGTTAAGAtattaagcaccttcagtacacaagactctgtgctggttttcttttcttttcttttttttttttactctaaatcatcaaaccctatgaggaaagtcctgttactttctcccatttagcactcttgaagaggctaatttgcctaagatcaagagctcgtcagtgactgctgaggttcaaacgcagatcttttttaagacttgagaacctacaggttcaaccaccattataAAACCATCTCTGTAATCACCAGGCACCCGGAATTTGTGGAGCTTGGACTTCATCCTGAAGGGAGTGAAAACTTATGGA--AGTTTTTTCCTTCCACGTTTCCCCCTTCCAGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55982785 1476 +  60714840 tttgttttttttgtttttttttttgagacggagtctcgctctgtcacccaagctggagtgcagtggtgcaatctcagctcactgcaagctctgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcagtctcct--gacctggtgatcagcccgccttagcctcccaaagtgctgggattacaggcatgag--ccactatgcccggccagtattttcttttctctagcttaattcatcataggaatacagaatataatatatacagcgtacaaaatgtgtgttaattgactatgttattggtaaggcttccagtcaactacgagtaatttttttttttattttttatcttgagacggtgtcttgctctgccagctgggctggggtgcaggggcattatcttagttcactgccgcctcaacctccttgactcaagcaatccttccaccacagcctcccaagtagctggaactacgggcacacgccaccacacccagcta--------atttttctgttttctgtagagtctgggtttcgc-catgttgcccaggctgg-------------------------------tcttgaactcctgggctcaagtgctct----------gcttcccaaatcccacctggggttacaggtgtgagccatggtgcctggcctagtagttaagttttggggaagtcaaaagttttatgcagattttctt------ttcttttttttttttttttgaggcagccttgctctgtcgcccaggatggagtgcagtggtacgatctcggctcactgcaacctccacgtcctgggttcaagcgatgctcttgcctcaacctcctgagtagctgggatttcaggtgcttgccaccatgcct-gcctaatttttgtatttttagtagagaccgggttttgccatgttggccaggctggtctcgaactcctgacctcagttgatctgccggccttggccgtccacaaagtgctgggattacaggcgtgaggcaccgcgcccagcctatatggaggttttcggctgagctgggggtcagtgcccctcgcccccagactgtaca-gagtcagctgTGTTAAGAtattaagcaccttcagtacacaaggctctgggctggttttttt--------tttttttttttacttctaaatcatcaaaccctatgaggaagctcctgttgctttctcccatttagcactcttgaagaggctaatctgcctaagatcaagagctcgtcagtgacagctgaggttaaaacgcagatcttttttaagacttgagaaccTACAGGTTCAATCACCATTATAAAACCATCTCTGTAATCACGAGGCACCCGGAATTTGTGGAGCTTGGACTTCATCCTGAAGGGAGTGAAAACTTACGGA--AGTTTTTTCCTTCCACGTTTCCCCCTTCCAGAT
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22              45459104 1346 +  49145316 ttt----------tttttctctctgagacagtgcctcgctctgccacctgggctggggtgcagtggcataatcttggttcactgcagcctcaacctctttggctcaagcagtcttcccacttcagcctcccaagtagctggaactatgggcgcatggcaccacatccagctaatttttc-tgttttctgtagagatgcggttttgccatgttgcccaggctggtctctaatttctaggttcaagtgatctacccacctcagcttcacaaagtgctgggatttcaggtgtgaaatccaccattcctggcc----------------------------------------------tagta---------------------gttaa--------gtt-ttggggaagtcaaaagttacatgcagattttcttttttgtcg------ttgttgaggaa--gtcttgctctgtcacccaggctggagtgcagtggcatgatcttggctcaccgcaacttctgcctcgcgggttcaactgattctcctgtctcagtctcctgagtagctgggattaccggcgcctgcctccatgcctggctaattcttgtattttttttcttttttttgagacggacttttgctcttattacccagactggagtgcaatggtgcgatctaggctcaccacaatctccgccttctgggttcaggcaattctcctgcctcagcctcccgagt---agctgggactacaggcacacaccaccatgcccagctaa---------------------------------------------------tttttatatttttagtagagacggggtttcaccatgttgaccaggatgg-------------------------------tcttgatctcttgacctc--gtgatctacccgcctcggcctcccaaagtgctgggattataggcgtgagccaccgcacccggcctgatttttgtatttttagtagagacggggtcttaccatgttggtcaggctgttctggaactcctgacctcatttgatttgcctgcctcggcctcctacaaagtgctgagattacaggtgtgagccacctcgcccggcctatatggaggttttcagctgagctggagatcaatgctcccagccccctcattggacaggagtcagctg--------GAGGAagcaccttcagtgtgcagggctctggtctgcttttcttttct----ttctttttttttactctaaatcatcaaaccctgtgaggaaagtcctgttacatgctcccacttagcactcttgaagaggctaatttgcctaagattaagagctggccagtgacagctgaggttcaaacaca----tttttt--gacttgagaacctacaggcttagccaccattataAAACCATCTC--TAATCATGAGGCACCTGGAATGTGTGGCGCTTGGACTTCATCCTGAAGGGAGTGAAAAGTTATGGAAGAGTTTTTTCCTCTCATGTTTTCCCCTTCCTGAT
i calJac3.chr22             I 429 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e chlSab2.chr6               46873987  535 +  50890351 I
e papAnu2.chr19              47167424 1926 +  51301725 M
e macFas5.chr19              55066113  522 +  59248254 I
e rheMac3.chr19              60040561  527 +  64156825 I

a score=94504.000000
s hg38.chr19_GL949751v2_alt    174176 57 +   1002683 GAATAATAT-ACGCGTGTTCAAGATACAAAAATGCATAAAATTTggccaggcatggtg
s panTro4.chr19              59106853 57 +  63644993 GAATAATAT-ACGCGTGTTCAAGATACAAAAATGCATAAAATTTggccaggcatggtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55984261 57 +  60714840 GAGTAATAT-ACGCGTGTTCAAGATATAAAAATGCATAAAATTTggccgggcatggtg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60041088 57 +  64156825 gaataatat-ACGCATGTTCAGGATACAAAAATATATAAAATTTggccgggcatggtg
i rheMac3.chr19             I 527 C 0
s macFas5.chr19              55066635 57 +  59248254 gaataatat-ACGCATGTTCAGGATACAAAAATATATAAAATTTggccgggcatggtg
i macFas5.chr19             I 522 C 0
s chlSab2.chr6               46874522 57 +  50890351 gaataatat-ACGCGTGTTCAAGATACaaaaatgcgtaaaatttggccgggcatggtg
i chlSab2.chr6              I 535 C 0
s calJac3.chr22              45460450 58 +  49145316 GAAAAATGTAAAGCGTGTTCAAGATAAAAAAATGCATAAAATTTGGCCGGGCTCAGTG
i calJac3.chr22             C 0 I 15
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=743525.000000
s hg38.chr19_GL949751v2_alt    174233 605 +   1002683 gcttacacctgtaatcccagcacttggggaggctgaggcgagtggatcacttgagcccaggagttcaagaccagcctgggcaatatggcaaaaccccgtctcaaaacaacaaaacaaaCAAACAAAAAACCCATAAAACTGAACAAGGTAGTTTGTAAGATATGGAAGTACAATGCAGATGACAATAATGACGATGGTAGCTACCactaggcgctttatttatgc----cactctcctcaacactggatagactctcacttaatcctcac----aagcttatgaggtaggcgctaccatcattcgccgttttacagaggaggacgctgaggcacagagtgattgagaaacttgtcgaaggcactgcagctggcaagtggtgacgtggcatttgaatccaggcatccggATGGTGTGGATGCCGTGGAAGAGAAAGGGGCGGGTGGGACTGCTTCCTGAGGAGATAGTGACTGCCGAGGCAGCAGCGTAGGGAAGACAACTGAAGAACACGAGCT---GTGGAGACAGACCATCGCATTCGGAGTGgagagatgggtgtacagacagacaataaccagactatatataaaaagagaactctAggtcaggcgcggtgg
s panTro4.chr19              59106910 609 +  63644993 gcttacacctgtaatcccagcacttggggaggctgaggcgagtggatcacttgagcccaggagttcaagaccagcctgggcaatatggcaaaaccccgtctcaaaacaacaaaacaaaCAAACAAAAAACCCATAAAACTGAACAAGGTAGTTTGTAAGATATGGAAGTACAATGCAGATGACAATAATGACGATGGTAGCTACCactaggcgctttatttatgccagacactctcctcaacactggatagactctcacttaatcctcac----aagcttatgaggtaggcactaccatcattcgccgttttacagaggaggacgctgaggcacagagtgattgagaaacttgtcgaaggcactgcagctggcaagtggtgacgtggcatttgaatccaggcatccggATGGTGTGGATGCCGTGGAAGAGAAAGGGGCGGGTGGGACTGCTTCCTGAGGAGATAGTGACTGCCGAGGCAGCAGCGTAGGGAAGACAACTGAAGAACACGAGCT---GTGGAGACAGACCATCGCATTCGGAGTGgagagatgggtgtacagacagacaataaccagactatatataaaaagagaactctAGGTCACgcgcggtgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55984318 596 +  60714840 gctcacacctgtaatcccagcacttggggaggctgaggcgagtggatcacttgagcccaggagttcaagaccagcctgggcaatatggcaaaaccccgtctcaaaataaca----aaacaaaCAAAAAACCCTTAAAACTGAACAAGGTAGTTTGTAAGATATGGAAATACAATGCAGATGGCGATAATGACGatggtagctaacactaggccc----tttatgccagaca--ctcctaaacactggatagactctcacttaatcctcac----aagcttatgaggtgggcactaccatcattccccgttttacagaggaggacgctgaggcac--agtgattgagaaacttgtcgaaggcactgcagctggcaagtggtgacgtggcatttgaatccaggcatccggATGGTGTGGATGCCGTGGAAGAGAAAGGGACGGGTGGGACTGC-TCCTGAGGAGATACTGACTGCCGAGGCAGCAGCGTAGGGAAGACAACTGAAGAACACGAGCT---GTGGAGACAGACCATCGCATTCGGAGTGgagagatgggtgtacagacagacaataaccagactatatacaaaaagagaactctAggtcaggcgcggtgg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60041145 602 +  64156825 gctcacacctgtaatcccagcacttggggaggctgaggcgagtggatcacttgagtccaggagttcaagaccagcctgggcaacatggcaaaaccccatttcaaaac--------aaacaaaacaaaaCCCCATAAAACTGAACAAGGTAGTTTGTAAGATATGGAAGTACAATGCAGATGACAATAATGACGatgatagctaacactaggcgctttatttacgccagacactttcctaaacactggatagactctcacttaagcctcacaaataagcctctgaggtaggcactaccatccttccccgttttacagaggaggacgctgaggcacagattgattgagaaacttgtcgaaggcactgcaactagcaagtggtgacatggcgtttgaatccaggcaTCCGAATGGTGTGGATGCGGTGGAAGAGAAAGGGGTGGGTAGGACAGCTTCCTGAGGGGATACTGA-TGCCGAGGCAGCAGCGTAGGGAAGAGAACTGAAGAACAGGAGCT---GTGGAGACAGATCATCGCATCCGGTGTGGACAGAtgggtatgcaagcggacaataaccagactatatataaaaagagaa--ctAggtcaggcgcggtgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55066692 599 +  59248254 gctcacacctgtaatcccagcacttggggaggctgaggcgagtggatcacttgagtccaggagttcaagaccagcccgggcaacatggcaaaaccccgtctca------------aaataaaacaaaaCCCCATAAAACTGAACAAGGTAGTTTGTAAGATATGGAAGTACAATGCAGATGACAATAATGACGatgatagctaacactaggcgctttatttacgccagacactttcctaaacactggatagactctcacttaagcctcacaaataagcctctgaggtaggcactaccatccttccccgttttacagaggaggacgctgaggcacagattgattgagaaacttgtcgaaggcactgcaactagcaagtggtgacatggcgtttgaatccaggcaTCCGAATGGTGTGGATGCGGTGGAAGAGAAAGGGGTGGGTAGGACAGCTTCCTGAGGGGATACTGACTGCCGAGGCAGCAGCGTAGGGAAGAGAACTGAAGAACAGGAGCT---GTGGAGACAGATCATCGCATCCGGTGTGGACAGATGGGTATGCAAGCAGACAATAACCAGACTATATATAAAAAGAGAA--CTAggtcaggctcggtgg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46874579 602 +  50890351 gctcacacctgtaatcccagcacttggggaggctgaggcgagtggatcacttgagtccaggagttcaagaccagcctgggcaatatggcaaaaccccgtcttaaaac--------aaacaaaacaaaaCCCCATAAAACTGAACAAGGTAGTTTGTAAGATATGGAAGTACAATGCAGATGACAATAATGACGatgatagctaacactaggcgctttatttacactagacactttcctaaacactggacagactctc----aatcctcacaaataagcctatgaggtaggcactaccatcattccccgttttacagaggaggacgctgaggcacagattgattgagaaacttgtcgaaggcactgcaactagcaagtggtgacatggcgtttgaatccaggcaTCCGAATGGTGTGGATGCGGTGGAAGAGAAAGGGGTGGGTAGGACTGCTTCCTGAGGAGATACTGACTGCCGAGGCAGCAGCGTAGGGAAGAGAACTGAAGAACAGGAGCTATGGTGGAGACAGACCATTGCATCCGGTGTGGACAGAtgggtacacaaacggacaataaccagactatatataaaaagagaa--ctAggtcaggcgcggtgg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e calJac3.chr22              45460508  15 +  49145316 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=74016.000000
s hg38.chr19_GL949751v2_alt    174838 43 +   1002683 ctcacacctgtaatcttagcactttgggaggctgaggcgggtg
s panTro4.chr19              59107519 43 +  63644993 ctcacacctgtaatcctagcactttgggaggctgaggcgggtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55984914 43 +  60714840 ctcacacctgtaatcctagcactttgggaggctgaggcgggtg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60041747 43 +  64156825 ttcacacctgtaatcccagcactttaggaggctgaggcgggtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55067291 43 +  59248254 ttcacacctgtaatcccagcactttaggaggctgaggcgggtg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46875181 43 +  50890351 ttcacacctgtaatcccagcactttaggaggctgaggtgggtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45460523 40 +  49145316 ctcacacctgtaatccctgcactttgggaggccgaggcgg---
i calJac3.chr22             I 15 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e nomLeu3.chr10             102751356 3534 - 106955855 I
e papAnu2.chr19              47167424 1926 +  51301725 M

a score=474825.000000
s hg38.chr19_GL949751v2_alt    174881 227 +   1002683 gatcacttgaggtcaggcgttggagaccaggagttcaaaaccccgtctctac-taaaaatttaaaaattagccgggcatggtggtgggcgcctgtagtcccagcttctcgggaggctgaggcacgagaatcgattgaacccgggaagcggaggttgcagtgagccgagatcgcac-cactgcactccagcctgggtgacgagagcgaaaaactccgtctcaaaaataaa
s panTro4.chr19              59107562 227 +  63644993 gatcacttgaggtcaggcgttggagaccaggagttcaaaaccccgtctctac-taaaaatataaaaattagccgggcatggtggtgggcgcctgtagtcccagcttctcgggaggctgaggcacgagaatcgattgaacccgggaagcggaggttgcagtgagccgagatcgcac-cactgcactccagcctgggtgacaagagcgaaaaactccgtctcaaaaataaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55984957 219 +  60714840 gatcacttgaagtcaggcgtttgagaccaggagttcaaaaccccgtctct-------aatataaaaattagctgggcatggtggtgggcacctgtagtcccagcttctggggaggctgaggcacgagaatcgattcaacctgggaagccgaggttgcagtgagccgagatcgcac-cactgcactccagcctgggtgacaagagcg--aaactccgtctcaaaaataaa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60041790 217 +  64156825 gatcacctgaagtcaggcgtttgagaccgggcgttcgaaaccccgtctctac-taaaaacataaaaattagccgggcatggtggtgggcgcctgtagtcccagctactcgg--------ggcacgagaaccgattgaaccggggaagcagaggttgcaatgagccgagatcgcgc-cactgcactccagcctgggtgacaagagcg--aaactccatctcaaaaataaa
i rheMac3.chr19             C 0 I 5
s macFas5.chr19              55067334 217 +  59248254 gatcacctgaagtcaggcgtttgagaccgggcgttcgaaaccccgtctctac-taaaaacataaaaattagccgggcatggtggtgggcgcctgtagtcccagctactcgg--------ggcacgagaaccgattgaacccgggaagcagaggttgcaatgagccgagatcgcgc-cactgcactccagcctgggtgacaagagcg--aaactccatctcaaaaataaa
i macFas5.chr19             C 0 I 5
s papAnu2.chr19              47169350 218 +  51301725 gatcacttgaagtcaggcgtttgagaccggGCGttcgaaaccccgtctctacttaaaaacataaaaattagccgggcatggtggtgggcgcctgtagtgccagctactcgg--------ggcacgagaatcgattgaacccgggaagcagagcttgcagtgagccgagatcgcgc-cactgcactccagcctgggtgacaagaggg--aaactccgtctcaaaaataaa
i papAnu2.chr19             M 1926 I 5
s chlSab2.chr6               46875224 217 +  50890351 gatcacttgaagtcaggagtttgagaccgggcattcgaaaccctgtctctac-taaaaacataaaaattagccgggcatggtggtgggcacctgtagtcccagctactcgg--------ggcacgagaatctattgaacccgggaagcagaggttgcagtgaaccgagatcgcgc-cactgcactccagcctgggtgacaagagcg--aaactccgtctcaaaaataaa
i chlSab2.chr6              C 0 T 10752
s calJac3.chr22              45460563 223 +  49145316 -atcacttgaggtctggagtttgagaccaggagttcgaaaccccgtttctac-taaaaatacaaaaattagcctggcatggtggtgggcgcccatagtcctagttactcgtgaggctgaggcatgaaagtcgattgaaccagggagtcgaaggctgcggtgagctgtgatctcgcgcactgtactccagcctgggtgac--gagtg--aaactccatttcaaaaataaa
i calJac3.chr22             C 0 I 5
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e nomLeu3.chr10             102751356 3534 - 106955855 I

a score=28651.000000
s hg38.chr19_GL949751v2_alt    175108 12 +   1002683 ataaaTTACTGA
s panTro4.chr19              59107789 12 +  63644993 ataaaTTACTGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55985176 12 +  60714840 ataaaTTACTGA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60042012 12 +  64156825 ataaaTTACTGA
i rheMac3.chr19             I 5 C 0
s macFas5.chr19              55067556 12 +  59248254 ataaaTTACTGA
i macFas5.chr19             I 5 C 0
s papAnu2.chr19              47169573 12 +  51301725 ataaattagtga
i papAnu2.chr19             I 5 C 0
s chlSab2.chr6               46864689 12 +  50890351 aTAAATTACTGA
i chlSab2.chr6              T 10752 C 0
s calJac3.chr22              45460791 12 +  49145316 gtaaaTTACTGA
i calJac3.chr22             I 5 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I
e nomLeu3.chr10             102751356 3534 - 106955855 I

a score=1504910.000000
s hg38.chr19_GL949751v2_alt    175120 560 +   1002683 TAATAGTACTAATACCCCTTAAGTGGCTAT-TGATAATAATAGTACCAT---GGGTGGGGGGGCAACTTCTCTGAGAGTGCTCTG-----TAAGTAtgtattgaagattgagtaaatacatttaaaattcttagaacagtatgtggcacat----agcgttccagaatgccacattattgttAGTGACAGAAATAATCTCggctgggcgcggtggctcacgcctgtaatcccagcacttt--gggggggccacggcgggaggctctctcgaggccgggagttcaagaccagcctgggcaacatggcaagacgccgactgtt----a---aaaaaaaaaaaatgctacccgggcgtcg---tggcgtgtgcctgtaatcccagctactggggaggaggtgggaggatcgctcgagcccgagaggttggtcggggcctcagtgagccgaaatcacgccactgcactccagcctgggcgacggagcgagaccctg--tctcagaaagaaaaaga-aaaaCCACCGTCCAGGGGCGGAGAAGGAAGGTTCTCCCTACTTCTCAGGTTTCCACTCCCTGGCCGGAAAAAACCT
s panTro4.chr19              59107801 565 +  63644993 TAATAATACTAATACCCCTTAAGTGGCTAT-TGATAATAATAGTACCAT--GGGGGGGGGGGGCAACTGCTCTGAGAGtgctctg-----taagtatgtattgaagattgagtaaatacatttaaaattcttagaacagtatgtggcacat----agcgttccagaatgccacattattgttAGTGACAGAAATAATCTCggctgggcgcggtggctcacgcctgtaatcccagcacttt--gggggggccacggcgggaggctctctcgaggccaggagttcaagaccagcctgggcaacatggcaagacgccgactgttaaaaa---aaaaaaaaaaaaagctacccgggcgtcg---tggcgtgtgcatgtaatcccagctactggggaggaggtgggaggatcgctcgagcccgagaggttggtcggggccgcagtgagccgaaatcacaccactgcactccagcctgggcgacagagcgagaccctg--tctcagaaagaaaaaga-aaaaCCACCGTCCAGGGGCGGAGAAGGAAGGTTCTCCCTACTTCTCAGGTTTCCACTCCCTGGCCGGAAAAAACCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55985188 559 +  60714840 TAATAGTATTAATACCCCTTAAGTGGGTAT-TG---GTAATAGTACCGT--GGGGCGGGGGGCCAACTTCTCTGAGAGtgctccg-----taagtatgtattgaagattgagtaaatacatttaaaattcttacaacagtaggtggcacatagaaagcgttccagaatgccacattattgttAGTGACAGAAATAATCTCggctgggcgcggtggctcacgtctgtaatcccagcacttt---ggggggccaaggcgggaggctctctcgaggccaggagttcaagaccagcctgggcaacatggcaagacgccgactgtt---------aaaaaaaaaaatgttacccgggcgtcg---tagcgtgtgcctgtaattccagctactggggaggaggtgggacgatcgctcgagcccgagaggttggtcggggctgcagtaagccgaaatcacgccactgcactccagcctgggcgacagagcgagaccctg--tctcagaaagaaagaga-aaaaCCACCGTCCAAGGGCGGAGAAGGAAGGTTCTCCCTGCTTCTCAGGTTTCCACTCCTTGGCCGGAAAAAGCCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102754890 553 - 106955855 TAATAGTATTCATACCCTTTAAGTGGGTAT-TG---GTAATAGTACCAT-GGGGGGGGGGGGGCAACTTCTCTGAGAGtgctccg-----taagtatgtattgaagattgagtaaatacatttaaaattcttagaacagtatgtggcacatagaaagcgttccagaatgccacattattgttAGTGAC--AAATAATCTCggctgggcgcggtggctcatgcctgtaatcccagcacttt---ggggggccacggcgggaggctctctcgaggccaggagttcaaggacagcctgggaaacatggcaagacgccgactgtt-----------aaaaaaaaaagttacccgggcgtcg---tggcgtgtgcctgtaatcccagctactggggaggaggtgggaggatcgctcgagcccgagaggttggtcggggctgcagtgagccgaaatcacgccactgcactccagcctgggcgacagagcgagaccctg--tctcagaaagaaagaga-aaaaCCACCGTCCAGCGGCGGAGAAGGAAGGTTCTCCCTA---CTCAGGTTTCCACTCCCTGGCCGGAAAAAACCT
i nomLeu3.chr10             I 3534 C 0
s rheMac3.chr19              60042024 561 +  64156825 TAATAGTATTAATACTCCTTAAGTGGGTAT-TG---ATAATAGTACCCT-----GGGGGAGGGCAACTTCTCCGAGAGtgctcca-----taagtatgtattgaagattgagtaaatacttttaaaattcttagaacagtatgtggcacatagaaagcgttccataatgccacattattgtCAGTGACAGAAATAACCTCggctgggcgcggtggctcacgcctgtaattccagcacttt---ggggggccaaggtgggaggctctcgcgaggccaggagttcaagaccagactgggcaacatggcaagacgccgattgtacca-----aaaaaaaaaaaaagttacccgggc-tcg---tggcgtgtgcttgtaatcccatctactggggaggaggtgggaggatcgctcaagcccgagaggttggtcggggcagcagtgaaccgagatcacaacactgcactccagcttgggctacagagcgagaccctgattctcagaaagaaagaga-aaTACCACCGTCCAGGGACGGAGAAGGATGATTCTCCCCGCTTCTCAGGTTTCTATTCCTTGCCCGGAAGAAACCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55067568 548 +  59248254 TAATAGTATTAATACTCCTTAAGTGGGTAT-TG---ATAATAGTACCAT-----GGGGGAGGGCAACTTCTCCGAGAGtgctcca-----taagtatgtattgaagattgagtaaatacttttaaaattcttagaacagtatgtggcacatagaaagcgttccataaTGCCACATTATTGTCAGTGACAGAAATAACCTCggctgggcgcggtggctcacgcctgtaattccagcacttt---ggggggccaaggtgggaggctctcgcgaggccaggagttcaagaccagactgggcaacatggcaagacgccgattgtacc------aaaaaaaaaaaaagttacccgggc-ttg---tggcgtgtgcttgtaatcccagctactggggaggaggtgggaggatcgctcaagcc------------cggggcagcagtgaaccgagatcacaacactgcactccagcttgggctacagagcgagaccctgattctcagaaagaaagaga-aaTACCACCGTCCAGGGACGGAGAAGGATGATTCTCCCCGCTTCTCAGGTTTCTACTCCTTGCCCGGAAGAAACCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47169585 552 +  51301725 taATAGTACTAATACTCCTTAAGTGGGTAT-TG---ATAATAGTACCAT-----GGGGGAGGGCAACTTCTCCGAGAGTGCTCCA-----TAAGTATGTATTGAAGATTGAGTAAGTACATTTAAAATTCTTAGAACAGTATGTGGCACATAGAAAGCGTTCCATAATGCCACATTATTGTCAGTGACAGAAATAacctcggctgggcgcggtggctcacgcctgtaatcccagcacttt---ggggggccaaggcaggaggctctcgcgaggccaggagttcaagaccagactgggcaacatggcaagacgcCGActgtaccaaaaagaaaaaaaaaaaaagttacccgGGC-TCG---TGGCgtgtacttgtaatcccagctactggggaggaggtgggaggatcgctcaagCCCGAGAGGTTGGTCGGGGcagcagtgaaccgagatcacaacactgcactccagcttgggctacagagcgagaccctg--tctcagaaagaaagaga-aataccaCCGTCCAGGGACGGAGAAGGATGATTCTCCCCGCTTC------------TCCTTGCACGGAAGAAACCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46864701 557 +  50890351 TAATAGTATTAATACTCCTTAAGTGGGTAT-TG---ATAATAGTACCAT-----GGGGGAGGGCAACTTCTCCGAGAGTGCTCCA---------TAtgtattgaagattgagtaaatacatttaaaattcttagaacagtatgtggcacatagaaagcgttccataatgccacattattgtCAGTGACAGAAATAATCTCggctgggcgcggtggctcacgcctgtaatcccagcacttt---ggggggccaaagcgggaggctctctcgaggccaggagttcaagaccagactgggcaacatggcaagacgctgactgtaccaaa---agaaaaaaaaaaagttacccgggc-tcg---tggcgtgtgcttgtaatcacagctactggggaggaggtgggaggatcgctcaagccggagaggttcgtcggggcagcagtgaaccgagatcacaacactgcactccagcttgggctacagagcgagaccctg--tctcagaaagaaagaga-aaTACCACCGTCCAGGGACGGAGAAGGATGATTCTCCCCGCTTCTCAGGTTTCCACTCCTTGCACAGAAGAAACCG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45460803 564 +  49145316 TAATGCTATTAATATTTCTTAAGCGAGAATCTC---ATAATAGTACCCTTTGGTGAGGGGGGGCACCTTCTCTGAAAGTGCTCCGTAACATAAGTATATACTGAGGATTGAGTAAATCCATTTAAAATTCTT-----AGTATGTGTCACAC----AGCGTTCCAGAATGCCACATGATTGTTCGTGACAGAAATAATCTCggctgggcgcggtggcacacgcctgtgatctcagcactttggggggggaccaaggcggaaggacctctcgaggccaggagttcgagaccagcctggacaacgtagcaagacgccgactgt---------acaggaaaaaaaagttacccgcgc-gcgcgctggcgtgtacctttaatcccatctactccggaggaagtgggaggatcgctcgagcccgagaggttggtcggggctgcagtgagcagagatcatgcaactgcaccccggcttgggcgacagagggagaccttg--tctcaaaaagcaaaagaggaaaCCACAGTCCAGGGATGGAGAAGGAAGGTTCTCCGCACTTGTCAAGTTTCCACTCCTTAGCCGGAAGAAAGCT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3701197 2697 + 145441459 I
e canFam3.chr1               19659152 64854 - 122678785 I

a score=48771.000000
s hg38.chr19_GL949751v2_alt    175680 15 +   1002683 AGTCCTCCCAGGTTA
s panTro4.chr19              59108366 15 +  63644993 AGTCCTCCCAGGTTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55985747 15 +  60714840 AGTCCTCCCAGGTTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102755443 15 - 106955855 AGTCCTCCCAGGTTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60042585 15 +  64156825 AGTCCTCCGAGGTTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55068116 15 +  59248254 AGTCCTCCCAGGTTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47170137 15 +  51301725 AGTCCTCCCAGGTTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46865258 15 +  50890351 AGTCCTCCCAGGTTA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45461367 15 +  49145316 AGTCATCCCAGTTCA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3703894 15 + 145441459 AGTCGGCCCAGCGAA
i mm10.chr7                 I 2697 C 0
e canFam3.chr1               19659152 64854 - 122678785 I

a score=645206.000000
s hg38.chr19_GL949751v2_alt    175695 192 +   1002683 GCACGCCGCTCTAGCCCAGCCTCACGTCTCCACTGCTTCT--CAGCCAGCCAACGCCTCTTCTGATTGGCTCTGACGTGCGTGGTGCGTGAAAACGTCACGAGACGCCGGCGTTACTATAAGAGCGCAGCCGTGGCGCTTGCGCGCCTCTTTCTCAGTGACCGGGTGGTTTGCTTA-GGTGAGGTGCGGCGG-TGT
s panTro4.chr19              59108381 192 +  63644993 GCACGCCGCTCTAGCCCAGCCTCACGTCTCCACTGCTTCT--CAGCCAGCCAACGCCTCTTCTGATTGGCTCTGACGTGCGTGGTGCGTGATAACGTCACGAGACGCCGGCGTTACTATAAGAGCGCAGCCGTGGCGCTTGCGCGCCTCTTTCTCAGTGACCGGCTGGTTTGCTCA-GGTGAGGTGCGGTGG-TGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55985762 192 +  60714840 GCACGCCGCTCTAGCCCAGCCTCACGTCTCCACTGCTTCT--CAGCCAGCCAACGCCTCTTCTGATTGGCTCTGACGTGCGTGGTGCGTGATAACGTCACGAGGCGCCGGCGTTACTATAAGAGCGCAGCCGTGTCACTTGCGCGCCTCTTTCTCAGGGACCGGGTTATGCGTTCA-GGTGAGGTGTAGTGG-TGT
i ponAbe2.chr19             C 0 I 8
s nomLeu3.chr10             102755458 192 - 106955855 GCACGCCGCTCTAGCCCAGCCTCACGTCTCCACTGCTTCC--CAGCCAGCCAACGCCTCTTCTGATTGGCTCTGACGTGCATGGTGCGTGATAACGTCACGAGGCGCCAGCGTTACTATAAAAGCGCAGCCGTGCCGGTTACGCGCCTCTTTCTCAGCGACCGGGTCTTTCGCTCA-GGTGAGGTGCGGTGG-TGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60042600 192 +  64156825 GCACGCCGCTCTAGCCCAGCCTCACGTCTCTACTGCTGCT--CAGCCAGCCAACGCCTCTTCTGATTGGCTCAGACGTGCCTGGTGCGTGATGACGTCACGAGGCGCCGGCGTTACTATAAGAGCGTAGCCTTGTCGCCGGCGCGCCTCTTCGTCAGTGGCCGGCTCTTGCGCTCA-GGTGAGATGTGGTGA-TAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55068131 192 +  59248254 GCACGCCGCTCTAGCCCAGCCTCACGTCTCTACTGCTGCT--CAGCCAGCCAACGCCTCTTCTGATTGGCTCAGACGTGCCTGGTGCGTGATGACGTCACGAGGCGCCGGCGTTACTATAAGAGCGTAGCCTTGTCGGTGGCGCGCCTCTTCGTCAGTGGCCGGCTCTTGCGTTCA-GGTGAGGTGTGGTGA-TGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47170152 192 +  51301725 GCACGCCGCTCTAGCCCAGCCTCACGTCTCTACTGCTTCT--CAGCCAGCCAACGCCTCTTCTGATTGGCTCAGACGTGCCTGGTGCGTGATGACGTCACGACGCGCCGGCGTTACTATAAGAGCGTAGCCCGGTCGCTTGCGCGCCTCTTTGTCAGTGGCCGGGTCTTGCGCTTA-GGTAAGATGTGGTGA-TGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46865273 192 +  50890351 GTACGCCGCTCTAGCCCAGCCTCACGTCTCTACTGCTTCT--TAGCCAGTCAACGCCTCTTCTGATTGGCTCAGACGTGCCTGGTGCGTGATGACGTCACGAGGCGCCGGCGTTACTATAAGAGCGCAGCCTGGTCGCTTGCGCGCCTCTTTGTCAGTGGCCGGGTCTTTCGCTTA-GGTAAGTTGTGGTGA-TGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45461382 192 +  49145316 GCACGCCGCTCTAGCCCAGACTCACATCTCGACTGCTTCT--CCGCCAGCCAACGCCTCCTCTGATTGGCTCAGACGTGCGTTGTGCGTGATAAGGTCACGAGGCGCTGGCGTTACTATAAGAGCGCAGCTGTGTCGCGTGCGCGTCTTTTTCTCAGTGTCCGGGCCCCGTACTTA-GGTGAGGTGTGGTGA-TGT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3703909 172 + 145441459 G--CGCCGCTCTAGCCGGCCTGCTCGTCTCTATGGCTTTC--CTG-------------CTTCTGATTGGCGTAGTCGCGAGCGGTGCGTGATGACGTCACTACAAGGCGACGTTACTATAAGACCTCGGTCCAACCGCCT-TGTCTCTCTTTGTCTCGGGCCTGA----GTTCGTA-GGTGAG-TGTTCTGATTGT
i mm10.chr7                 C 0 I 3
s canFam3.chr1              102989285 186 + 122678785 GCTCGTCGCTCTGGCCCAACCTCTCGTCTCGAATGCTTTTTCCCGTCCGCCTACGCCTCTTCTGATTGGTGCAGATGTGCGGCGTGCGCGCTGACGTCACCAGGCCGCGGCGTTGCTATAAAAGCGTGCTCGGG--GGCCGCGTGCTTCTCTTTCTCCGGTCTGG----GAGCTCACGGTAAGGAGTAGTGT----
i canFam3.chr1              n 64854 C 0

a score=28137.000000
s hg38.chr19_GL949751v2_alt    175887 15 +   1002683 GCTTTTTCTCTAGGG-
s panTro4.chr19              59108573 15 +  63644993 GCTTTTTCTCTAGGG-
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102755650 15 - 106955855 GCTTTTTCGCTAGGG-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60042792 15 +  64156825 ACTTTTTCGCTAGGG-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55068323 15 +  59248254 CCTTTTTCGCTAGGG-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47170344 15 +  51301725 CCTTTTTCGCTAGGG-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46865465 15 +  50890351 GCTTTTTCGTTAGGG-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45461574 15 +  49145316 GCTTTGTGGCTAGGG-
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3704084 15 + 145441459 GTTCGCCTTTTAGGG-
i mm10.chr7                 I 3 I 1
s canFam3.chr1              102989471 15 + 122678785 -GTTGTGCCCGCGGGT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              55985954  8 +  60714840 I

a score=1386271.000000
s hg38.chr19_GL949751v2_alt    175902 423 +   1002683 -----TTTGGGTTGGATGGTGGCCCGGGCCTTCCGAGTTTCCATGAGTAAGCTAAAGACGTTAGGAAACAGAGC-AGGGTGGTTGAACGGGAGTGCAGCACGGTTGTGGGGGCAGATACTGACTATGAGAGCGTTGGAGGTTATTCTCGCGAGATCGGATCTGGGCTCCGCGAGGTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGTTTGG--AGCC-CTTACGCTCACACTTCTCTCCCGCGCAGGCGCAGACGGGGAAGCGG----AGCCAACATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCCGGGAAGTGGTTCGGCTTCCG---GGAGGCGGTTAGCACGTGGATGA
s panTro4.chr19              59108588 417 +  63644993 -----TTTGGGTTGGATGGTGGCCCGGGCCTTCCGAGTTTCCATGAGTAAGCTAAAGACGTTAGGAAACAGAGC-AGGGTGGTTGAACGGGAGTGCAGCACGGTTGTGGGGGCAGATACTGACTATGAGAGCGTTGGAGGTTATTCTCGCGAGATCGGATCTGGGCTCTGCGAGGTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGTCTGG--AGCC-CTTACG------CTTCTCTCCCGCGCAGGCGCAGACGGGGAAGCGG----AGCCAACATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCCGGGAAGTGGTTCGGCTTCCG---GGAGGCGGTTAGCACGTGGATGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55985962 423 +  60714840 -----TTTGGGTTGGATGGTGGCCTGGGCCTTCCGAGTTTCCATGAGTAACCTGAAGACGTTAGGGAACAGAGC-AGGGTGGTTGAACGGGAGTGCAGCACGGTTTTGGGGGCTGATACTGACTGTGAGAGCGTTGGAGGTTATTCTCGCGAGATCCGATCTGGGCGCCGCGAGTTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGCCTGG--AGCC-CTTACGCTTATGCTTCTCTCCCGCGCAGGCGCAGACGGGGAAGCGG----AGCCAACATGCCGGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCCGGGAAGTGGTTCGGCTTCCG---GGAGGCGGTTAGCACGTGGATGA
i ponAbe2.chr19             I 8 C 0
s nomLeu3.chr10             102755665 422 - 106955855 -----TTTGGGCCGGATGGTGGCCTGGGCCTTCCGAGGTTCCATGAGTAAGCTAAAGACGTTAGGGGTGAGAGC-AGGGTGGTTGAACGGGAGTGCGGCACGGTTGTGGGGGCGGATACTGACTATGAGACCATTGGAGGTTATTCTCGCGAGATTCTATCTGGACGCCGCGAGGTTTTGGCGTAGTTTTGGGACTGCGCAGGCGCTGCTTGG--GGCT-CTTA-ACTCACGCTTCTCTCCCGCGCAGGCGCAGACGGGGAAGCGG----AGCCAATATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCCGAGAAGTGGTTCGGCTTCCG---GGAGGCGGTTAGCACGTGAATGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60042807 426 +  64156825 -----TTTGGGTTGGATGGTCGCGCGGGCCTTCCGAGCTTCCATGAGTAAGCTAAAGGCGTTAGGGATTGGAGT-AGGGTGGTTGAACGGGAGTGCAGCACAGTAGTGGGGGCGGATACTGGCGATGAGAGCTTTGGAGGTTATTCTCGCGAGATCCAATCCGGGCGCCGCAAGGTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGCCCGG--AGCT-CTTAGGCTCACGCTTCCCTCCCGGGCAGGCGCAGACGGGTAAGCGG----AGCCAACATGCCGGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTACGTGACCCCGAGGAGACCCTTTGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCTGGGAAGTGGTGCGGCTTCCGGGAGGAGGCGGGTAGCACGTGGATGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55068338 426 +  59248254 -----TTTGGGTTGGATGGTCGCGCGGGCCTTCCGAGCTTCCATGAGTAAGCTAAAGGCGTTAGGGATTGGAGT-AGGGTGGTTGAACGGGAGTGCAGCACAGTAGTGGGGGCGGATACTGGCGATGAGAGCTTTGGAGGTTATTCTCGCGAGATCCAATCCGGGCGCCGCAAGGTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGTCCGG--AGCT-CTTAGGCTCACGCTTCCCTCCCGGGCAGGCGCAGACGGGTAAGCGG----AGCCAACATGCCGGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTACGTGACCCCGCGGAGACCCTTTGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTTTGGGAAGTGGTGCGGCTTCCGGGAGGAGGCGGGTAGCACGTGGATGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47170359 426 +  51301725 -----TTTGGGTTGGATGGTCACGCGGGCCTTCCAAGCTTCCATGAGTAAGCTAAAGGCGTTAGGGATTGGAGT-AGGGTGGTTGAACGGGAGTACAACACGGTAGTGGGGGAGGATACTGGCGGTGAGAGCTTTGGAGGTTATTCTCGCGAGATCCAGTCCGGGCGCCGCAAGGTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGCCCGG--AGCT-CTTAGGCTCACGCTTCCCTCCCGGGCAGGCGCAGACGGGTAAGCGG----AGCCAACATGCCGGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTACGTGACCCCGCGGAGGCCCTTTGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCTGGGAAGTGGTTCGGCTTCCGGGAGGAGGCGGGTAACACGTGAATGa
i papAnu2.chr19             C 0 M 1331
s chlSab2.chr6               46865480 423 +  50890351 -----TTTGGGTTGGATGGTCGCGCGGGCCTTCCGAGCTTCCATGAGTAAGCTAAAGGCGTTAGGGATTGGAGT-AGGGTGGTTGAACGGGAGTGCAGCACGGTAGTGGGGGCGGATACTGGCGATGAGAGCTTTGGAGGTTATTCTCGCGAGATCCAATCCGGGCGCCGCAAGGTTTTGGCGTAGTTGTGGGACTGCGCAGGCGCCGCCCGG--AGCT-CTTAGGCTCACGCTTCCCTCCCGGTCAGGCGCAGACGGGTAAGCGG----AGCCAACATGCCGGTGGCCCGGAGCTGGGTATGTCGCAAAACTTACGTGACCCCGCGGAGACCCTTTGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGGC----TTCTGGGAAGTGGTTCGGCTTCCG---GGAGGCGGGTAACACGTGGATGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45461589 409 +  49145316 -----TTTGGGCTGGATGTTCGCGCGGGCCTTCCGAGCTTCCATGAGCAAGCTAAAGACGTTAGGGATCAGAGC-AGGGAGGCTGAATGAGAAAGCAGCACGGTTTTTGGGGCGGATACTGATTATGAAAGCTTTTGAAGTGATTCTCGCGAGATCCAATCTGGGCGCCGCGAAGTTTTGGCGCAGTTGTGGGACTGCGCTGGCGCCACCTAG--AGCC-CTCATTTTCCAACTTTCCTTCCGCGCAGGCGCAGACGGGTAAGCGGAGCCAGCCAGCATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCAAGAGCTGAAGCTGATCGGTGAGTGGCCAAGCC----TTCCGAGAGGCG---------------------GGTTAGCACGTGGATGA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3704100 406 + 145441459 -----TTGATGGTGTAAGGTAACG-GAGCCATTCGAATCTTCATGAACATGCTGA----GTAAGAGGGTGGGGCGAAGGTGGCTGGAAG---TTACAACACGGTTGTGGAA--CAATCCCATTTTCAAGTTTTCTAAGGCGGATTTCTCTGAGAGCCGAGTTGGTGTCGCCGTGTCCCTAGCGGGGTTTTG---CTGCACATGCGCCACAAGATTATTT-TTTAAAACGACACTTTACT---GCGCAGGCGCAGCCGGCCTAGCGA----GGTCAACATGCCGGTCGCCAGAAGCTGGGTTTGTCGCAAAACCTATGTGACCCCACGGAGACCCTTCGAGAAGTCGCGTCTCGACCAGGAGCTAAAGTTGATTGGTGAGTGGCCAAAGTAGAATTTCGAATTGCGG------ATCCGGGAAGAGTTAGGTAGCC-----ATGA
i mm10.chr7                 I 1 I 4
s canFam3.chr1              102989486 286 + 122678785 CAGGGGGTGGGTTGCGAGGTCG-----------------------------------------------------GAGACGGTCAGATGAGACTGCAGCGCGGGAGTGTGGG---------------------------------TTCGCTAG-------------------------------------GGGGCCGCGTAGGCGCCGTCCAC--GCCCACACGGGCCCTTCTTGCCCTCCCGCGCAGGCGGACGC------GCGG----AGCCAACATGCCAGTGGCCCGGAGCTGGGTGTGTCGTAAGACTTATGTGACCCCTCGGAGGCCCTTCGAGAAGTCGCGCCTCGACCAGGAACTGAAACTGATCGGTGAGTAGCCTGGAC------CCG------GCTTCCGCTTCCG---GGTGAGGG-------GTGGGCGA
i canFam3.chr1              C 0 C 0

a score=207965.000000
s hg38.chr19_GL949751v2_alt    176325 113 +   1002683 AGGTGCCCA-TGTACTCTATCTAGTCCGTCCCCTAAATTTGGTACTAT----TCGTGGTTTAGGAAGGTTTTGTGATTCCAAAGCTGCCAGTCTAGTTGTTGTGCCAGTACGTGGGAC
s panTro4.chr19              59109005 113 +  63644993 AGGCGCCCA-TGTACTCTATCTAGTCCGTCCCCTAAATTTGGTACTAT----TCGTGGTTTAGGAAGGTTTTGTGAATCCAAAGCTGCCAGTCTAGTTGTTGTGCCAGTACGTGGGAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55986385 113 +  60714840 AGGCGCCCG-CGTGCTCGATCTAGTCCGCCTCCTAAATTTGGTACTAT----TCGTGGTTTAGGAAGGTTTTGTGTATCCAAAACTGCCAGCCTAGTTTTTGTGCCAGTACGTGGGAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102756087 114 - 106955855 ACGCGCCCAGGGTGCTCGATCTAGTCCGCCCCCTAAATTTGGTACTAT----TGGTGGTTTAGGAAGGTTTTGTGTATCCAAAGCTGCCAGCCTGGTTTTTGTGCCGGTACGTGGGAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60043233 113 +  64156825 AGGCGCCCA-CGTGCTTGATCTAGTCGGCCCCCTAAATTTGGTACTCT----TCGTGGTTTGGGAAGGTTCTGTGTATCCAAAGCTGCCAGGGTAGTTTTTGTACCAGTACGTGGGAC
i rheMac3.chr19             C 0 I 18
s macFas5.chr19              55068764 113 +  59248254 AGGCGCCCA-CGTGCTTGATCTAGTCGGCCCCCTAAATTTGGTACTCT----TCGTGGTTTGGGAAGGTTCTGTGTATCCAAAGCTGCCAGGGTAGTTTTTGTACCAGTACGTGGGAC
i macFas5.chr19             C 0 I 18
s chlSab2.chr6               46865903 113 +  50890351 AGGCGCCCA-CGTGCTTGATCTAGTCTGCCCCCTAAATTTGGTACTCT----TCGTGGTTTAGGAAGGTTCTGTGTATCCAAAGCTGCCAGGGTAGTTTTTGTACCAGTACGTGGGAC
i chlSab2.chr6              C 0 I 10741
s calJac3.chr22              45461998 113 +  49145316 GGGTGCCCA-CGTGCTCGATCCAGTCTGCCCTCTAAATTTGGCACTGT----TCGTGGTGTAGAAAGGTTTTGTTTGTCCAACGTTGCCGGCCTAGTTTTTGTACTAATCTCCGAGAC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3704510  93 + 145441459 TGTCTCCCA-CGTGCTCGTTCTGGAGCATCCT----GTGTGGCGCCAGAGGATTGCAGTTTA-----GTTTTGTGTTCTC-------------TAGTCGCCATGC--ACATGTAGTAA
i mm10.chr7                 I 4 I 5
s canFam3.chr1              102989772  37 + 122678785 -GGCCGCCG-CGTGCTGGCTCTGCGCCACCTGCCGGGCC-------------------------------------------------------------------------------
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47170785 1331 +  51301725 M

a score=594972.000000
s hg38.chr19_GL949751v2_alt    176438 164 +   1002683 TACACTTG-TCCACCCCCTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAGGTGCGTATGGG
s panTro4.chr19              59109118 164 +  63644993 TACACTTG-TCCACCCCCTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCTCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAGGTGCGTATGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55986498 164 +  60714840 TACACTTG-TTCACCCCTTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAGGTGCGTATGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102756201 164 - 106955855 CACACTTG-TCCACCCCCTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAATAAACGTGAGGTCTGGAGGGTCAAATTTACCTTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAGGTGTGTATGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60043364 164 +  64156825 TACACTTT-TCCACTCTCTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAGGTACGTATGGG
i rheMac3.chr19             I 18 C 0
s macFas5.chr19              55068895 164 +  59248254 TACACTTT-TCCACTCTCTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGTCTGTTCGAAGGTACGTATGGG
i macFas5.chr19             I 18 C 0
s chlSab2.chr6               46876757 164 +  50890351 TACACTTG-TCCACTCTCTTCTCCCCAC------CAGGCGAGTATGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAATTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAACTGCTGACGCTTGATGAGAAGGACCCACGGCGACTGTTCGAAGGTACGTGTGGG
i chlSab2.chr6              I 10741 C 0
s calJac3.chr22              45462111 170 +  49145316 TAAACTTG-TCCATCTCCTTCTCCCCACCATATGCAGGCGAGTATGGGCTTCGGAACAAACGTGAGGTCTGGAGGGTCAAGTTTACCCTGGCCAAGATCCGCAAGGCCGCCCGAGAGCTGCTGACACTTGACGAGAAGGATCCACGGCGTCTTTTCGAAGGTGCGTATGGA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3704608 171 + 145441459 GGCTCTTGCCCCGCGGTCTCCTCCCAACCACGTGCAGGAGAGTATGGACTCCGGAACAAACGTGAGGTTTGGAGGGTCAAGTTTACCCTGGCCAAGATCCGTAAGGCGGCCCGGGAGCTGTTGACGCTAGACGAGAAGGATCCCCGGCGTCTGTTTGAAGGTGTGTATGAG
i mm10.chr7                 I 5 I 907
s canFam3.chr1              102989809 163 + 122678785 CCCAGCCA-GCCAGCGCCCTGTCTCCG-------CAGGCGAGTACGGGCTCCGGAACAAACGTGAGGTCTGGAGGGTCAAGTTTACCCTGGCCAAGATCCGCAAGGCCGCCCGGGAGCTGCTGACGCTGGACGAAAAGGACCCGCGGCGCCTGTTCGAAGGTGTGTGTGAG
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47170785 1331 +  51301725 M

a score=24664.000000
s hg38.chr19_GL949751v2_alt    176602 9 +   1002683 AGTCCACAG
s panTro4.chr19              59109282 9 +  63644993 AGTCCACAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55986662 9 +  60714840 AGTCCACAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102756365 9 - 106955855 AGTCCACAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60043528 9 +  64156825 AGTCCACAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55069059 9 +  59248254 AGTCCACAG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46876921 9 +  50890351 AATCCACAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45462281 9 +  49145316 AGCCCACAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102989972 9 + 122678785 CGTGCACGG
i canFam3.chr1              C 0 I 483
e mm10.chr7                   3704779 907 + 145441459 I
e papAnu2.chr19              47170785 1331 +  51301725 M

a score=1072851.000000
s hg38.chr19_GL949751v2_alt    176611 528 +   1002683 CAGAGGGATGGGGTGCAGGGCTTGTGAGGTTCATTCTCCCTTCTGTTGC-----CTCTGTTCCAGTGATGAGAGTTGTGTCATTGGATAAATGGAACCAGCCTTCTAAC------TTTTAGTGGCACTTGTGAAGTAGGAAAAGTGTATCTGGATC--AGTCTTTGCCCTGTTTCTTAGGTGTGTGGCTTTTTTGCCCAGTTATTGGACCTTCAGTTTAGTAATGACCAGAGCTAAAGATAGGCCTGGCACACCTGGGCACCCGTCTATATCTTTAT-----------------ATTCTGTTTATGTGGCCTGTTTGCTAGTGGATGAGAGTAGACTATGAAGTGGAATTTCTGGGCTAAGTGATGGTGATAACAGGGTTTGCACATTTGCTTGGTTTATTG--TTTTTTTAATTAAGTTTTCTCGttttatttagtcttttgagacggagtcttgctctgttgcccaggctggagtgccgtggcgccatttcggcttactgcaacccccgcctcctgggttcaaacaattctcctatcttagcctcccaagtagctggg
s panTro4.chr19              59109291 544 +  63644993 CAGAGGGATGGGGTGCAGGGCTTGTGAGGTTCATTCTCCCTTCTGTTGC-----CTCTGTTCCAGTGATGAGAGTTGTGTCATTGGATAAATGGAGCCAGCCTTTTAAC------TTTTAGTGGCACTTGTGGAGTAGGAAAAGTGTATCTGGATC--AGTCTTTGCCCTGTTTCTTAGGTGTGTGGCTTTTTTGCCCAGTTACTGGACCTTCAGTTTAGTAATGACCAGAGATAAAGATAGGCCTGGCACACCTGGGCACCCGTCTATATCTTTATATGATGTCTC-AAAACAATTCTGTTTATGTGGCCTGTTTGCTAGTGGATGAGAGTAGACTATGAAGTGGAATTTCTGGGCTAAGTTATGGTGATAACAGGGTTTGCACATTTGCTTGGTTTGTTG--TTTTTTTAATTAAGTTTTCTCGttttatttagttttttgagacggagtcttgctctgtcgcccaggctggagtgccgtggcgcaatttcggcttactgcaacccccgcctcctgggttcaaacaattctcctatcttagcctcccaagtagctggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55986671 543 +  60714840 CAGAGGGATGGGGTGCAGGGCTTGTGAGGTTCATTCTCCCTTCTGGTGT-----CTCTGTTCCAGTGATGAGAGTTGTGTCATTGGATAAATGGAGCCAGCCTTTTAAC------TTTTAGTGGCACTTGTGGAGTAGGAAAAGTGGATCTGGATC--AGTCTTTGCCCTGTTTCTTAGGTGTGTGGCTTTTTTGCCCAGTTACTGGACCTTCAGTTTGGTAATGACCAGAGCTAAAGATAGGCCTGGCACACTTGGGCACTTGTCTGTGTCTTTATATGATGTCTC-AAAACAGTTCTGTTTATGTGGCCTGTTTGTTGGTGGATGAGAGTAGACTATGAAGTGGGATTTCTGGACTAAGTGATGGTGGTAACAGGGTTTGCACGTTTGCTTGGTTTATTG--TTTTTTTAATTAAATTTTCTCGTGttattta-ttttttgagacggagtcttgctctgtcgcccaggctggagtgccgtggcgcaatttcggcttactgcaacccccgcctcctgggttcaaacaattctcctatcttagcctcccaagtagctggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102756374 537 - 106955855 CAGAGGGATGGGGTGCAGGGCTTGTGAGGTTAATTCTGCCTTCTGCTGC-----CTCTGTTCCAGTGATGAGAG--GTGTCATTGGATAAATGGAGCCAGCCTTTTAAC------TTTTAGTGGCACTTGTGGAGGAGGAAAAGTGGATCTGGATC--AGTCTTTGCCCTGTTTCTTAGGTGTGTGGCTTTTTTGCCCAGTTACTGGACCTTCAGTTTAGTAACGACCAGAGCTAAAGATAGGCCTGGCACACTTGGGCACCTGTCTA------TATATGATGTCTC-AAAACAGTTCTGTTTCTGTGGCCTGTTTGCTGGAGG-TGAGAGTAGACTATGCAGTGGAATTTCTGGACTAAGAGATGGTGATAACAGGGTTTGCACATTTGCTTGGTTTATTGTTTTTTTTTAATTAAACTTTCTCGttttatttatttttttgagacggagtcttgctctgtcgcccaggctggagtgccgtggcgcaatttcagcttactgcaacccctgcttcctgggttcaaacaattctcctatctcagcctcccaagtagctggg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60043537 543 +  64156825 CAGAGCGATGGGGCGCAGGGCTTGTGAGGGGCATTCTCCGTTCTGCCGC-----CTCTGTTCTAGTGAT--GAGTTGTGTCATTGGGCAAATGGAGCCAGCCTTTTAACTTAGTGTTTTAATGGCACTTGCGGAGTAGGAAATGTGGAACTGGATC--AGTCTTTGTCCTGTTTCTTAGGCGTGTGGCTTTTTTGCCCAGTTACTGGACCTTCAGTTTAGTAATGACCAGAGCTAAAGATAGGCCT-GCACATTTGGGCACTTGTCTATATCTTTATATGGTATCTC-AAAACAGTACTGCTTGTGTGGCCTGTTTGCTGGTGG-TGAGAGTAGACTAGGAAGTGGAATTTCTGGAATAAGTGATGGTGGTAACAGGGTTTGCACGTTTGCTTGCttta-----tttttttttttaattttttttgttttgtttatttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggctcaatttcggcttactgcaacccccgcctcctgggttcaaacaattctcctatttcagcctcctaagtagctggt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55069068 541 +  59248254 CAGAGCGATGGGGCGCAGGGCTTGTGA-GGGCATTCTCCGTTCTGCCGC-----CTCTGTTCTAGTGAT--GAGTTGTGTCATTGGACAAATGGAGCCAGCCTTTTAACTTAGTGTTTTAATGGCACTTGCGGAGTAGGAAAAGTGGAACTGGATC--AGTCTTTGTCCTGTTTCTTAGGCGTGTGGCTTTTTTGCCCAGTTACTGGACCTTCAGTTTAGTAATGACCAGAGCTAAAGATAGGTCT-GCACATTTGGGCACTTGTCTATATCTTTATATGGTATCTC-AAAACAGTACTGCTTGTGTGGCCTGTTTGCTGGTGG-TGAGAGTAGACTAGGAAGTGGAATTTCTGGAATAAGTGATGGTGATAACAGGGTTTGCACGTTTGCTTGCttta------tttttttttaaattttttttgttttgtttatttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggctcaatttcggcttactgcaacccccgcctcctgggttcaaacaattctcctatttcagcctcctaagtagctggt
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46876930 539 +  50890351 CAGAGCGACGGGGCGCAGGGCTTGTGAGGGGCATACTCCGTTCTGCCGC-----CTCTGTTCTAGTGAT--GAGTTGTGTCATTGGACAAATGGAGCCAGCCTTTTAACTTAGTGTTTTAATGGCACTTGTGGAGTAGGAAAAGTGGAACTGGATCAGAGTCGTTGTCCTGTTTCTTAGGCGTGTGGCTTTTTTGCCCAGTTACTGGACCTTGAGTTTGGTAATGACCAGAGCTAAAGATAGGCCT-GCACATTTGGGCACTTGTCTATATCTTTATATGGTATCTC-AAAACAGTACTGCTTATGTGGTCGGTTTGCTGGTGG-CGAGAGTAGACTATGAAGTGGAATTTCTGGAATAAGTGATGGTGATAACAGGGTTTACACATTTGCTTGCTTTA-----TGTTTTTAAAAAATtttttttgt----tttatttttttgggac--agtcttgctctgttgcccaggctggagtgcagtggctcaatttcggcttactgcaacccctgcctcctgggttcaaacaattctcctatttcagcctcctaagtagctggt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45462290 522 +  49145316 CAGAGGGATGGACCGCAGGGCTTGGGAGGTTCATTGTCCCTTATTGTGAGGCTGCTCTGTTCCAATGATGGGAGTTGTGACCTTGGACAAACAGAGACAGCCTTTTAACTTGGTGTTTTAATGGGACTTGTGGAGTAGGAACAGTGGAGCTGGATC--AGTCTTTGCCCTGTTTCCTAGCTCTGTGGC-TTGTTACCCAGTTCCTGGACTTTGAGTTTAGTAATGACCAGAGCTAAAG--AGGCCTGGCACACTTGGGCACCTGACTATATCTTTATATGATGTCACAAAAACAATTCTGATCATGTGACCTCCTTGCTAGTGG-TGAGAGTAGACTGTGAAGTCGAATTTCTGGAATGAGTGATGGTGATAACAGGTTTT-CACATTTGCTTAT---------TTTTTTAAATTAAA--------------------ttttgagacagaatctcacttta--gcccaggttagagtgcaatggcaggatctcagctcactgcaacctgcacctcccgggttcaagcaatactcctgcctcagcctcccaagtagctggg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102989981 483 + 122678785 I
e papAnu2.chr19              47170785 1331 +  51301725 M

a score=273581.000000
s hg38.chr19_GL949751v2_alt    177139 164 +   1002683 actacagacaggcgcacgccaccacacctggctaattttacttttgagacggagtctcgctccattgcccatgctggagtgtagttgtcgcaatcttggctcactgcaaactccgcctccagagttcaagcgattctcctgtcttagcctcctaagtagctgga
s panTro4.chr19              59109835 164 +  63644993 actacagacaggcgcatgccaccacacctggctaattttacttttgagacggagtctcgctctattgcccatgctggagtgtagttgtcgcaatcttggctcactgcaaactccgcctccagagttcaagcgattctcctgtcttagcctcctaagtagctgga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55987214 164 +  60714840 actacagacaggcgcacgccaccacgcctggctaattttacttttgagatggagtctcgctctattgcccgtgctgtagtgcagttgtcgcaatcttggctcactgcaaactccgcctccagagttcaaacgattctcctgtcttagcctcctaagtagctggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102756911 164 - 106955855 actacagacaggcacacgccaccacgcctggctaattttacttttgagacggagtctcgcgctgttgcccatgctggagtgcagttgtcgcaatcttggctccctgcaaactccgcctccagattgcaagcgattctcctgtcttagcctcctaagtagctggg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60044080 164 +  64156825 actacagacagtcacacgccaccacgcccggctaattttacttttgattcggagtctcgctcagttgcccaggctggagtgcagttggtgcagtctccgctcactgcaaactctgcctcccgggttcaagcgattttgcagtctcagcctcccaagtagctggg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55069609 164 +  59248254 actacagacaggcacacgccaccacgcccggctaattttacttttgatacggagtcttgctcagttgcccaggctggagtgcagttggtgcagtttccgctcactgcaaactctgcctcccgggttcaagcgattttccagtctcagcctcccaagtagctggg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46877469 164 +  50890351 actacagacaggcacacgccaccacatccggcTAAttttacttttgatacggagtctcgctcagttgcccaggctggagtgcagttggtgcagtctccactcactgcaaactctgcctccctggttcaagcgattttccagtctcagcctcccaagtagctggg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102989981 483 + 122678785 I
e calJac3.chr22              45462812   0 +  49145316 C
e papAnu2.chr19              47170785 1331 +  51301725 M

a score=600142.000000
s hg38.chr19_GL949751v2_alt    177303 279 +   1002683 atcacaggc-----atgggccaccaagcctggctaattttctattattagtggagatgggttttcaccatgttgtccaggctggtGCTTGTTTTTTtaagctggtcaaggacatttaggtggtatttagcaaaggcctgaacaggagagaacctgtaaaatgtctcagggaacagcatttcaggTGATGACTTTAGGAGGGCATGCAGATCACATAGACTTAGGCTTACtttactaattgtggtgaaatacacattaaattgaaaatgtaccatcttaaccatc
s panTro4.chr19              59109999 279 +  63644993 atcacaggc-----atgggccaccaagcctggctaattttctattattagtggagatgggttttcaccatgttgtccaggctggtGCTTGttttattaagctggtcaaggacatttaggtggtatttagcaaaggcctgaacaggagagaatctgtaaaatgtctcagggaacagcatttcaggTGATGACTTTAGGAGGGCATGCAGATCACGTAGACTTAGGCTTACtttactaattgtggtgaaatatacattaacttgaaagtgtaccatcttaaccatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55987378 279 +  60714840 atcacaggc-----atgcgccaccaaacctggcTAAttttgtattatgagtggagacgggttttcaccatgttgcccaggctggtgcttgttttattaagctggtCAAGGACATTTaggtggtatttagcaaaggcctgaacaggagagaatctgtaaaatgtctcagggaacagcatttcaggTGATGACTTTAGGAGGGCATGCAGATCGCATAGACTTAGGCTTACTTTACTAATTGTGGTGAAATATATATTAACTTGAAAATGTGCCATCTTAACCATC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102757075 276 - 106955855 atcacaggc-----atgcgccaccaagcctggcTAAttttgtattattagtggagacgggttttcaccatgttgcccaggctggtGCTTGTTTTATTAAGCTGGTCAAGGACATTTAGGTGGTATTTAGCAAAGGCCTGAA---GAGAGAATCTGTAAAATGTTTCAGGGAACAGCATTTCAGGTGATGGCTTTAGGAGGGCACGCAGATCGCATGGACTTAGGCTTACTTTACGAATTGCGGCGAAATATACATTAACTTGAAAATGTACCATCTTAATCGTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60044244 284 +  64156825 atcacaggctaataatgcaccaccacgcccggctaattttgtattattagtagagacggggtttcaccatgttgcccaggctggtGCTTGCTTTATTAAGCTGGTTAAGGACATGTAGATGGCATTGAGCAAAGGCCTGAACAGGAGAGAATCTGTAAAATGTCTCAGGGAACAGCATTTCAGGTGATGACTTTAGAAGGGCATGCAGATCATATAGATTTAGGCTTGCTTTACTAATTGTGGTGGAACAGACATTAACATGAAAGTTGATCATGTTAACCATT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55069773 284 +  59248254 atcacaggctaataatgcaccaccacgcccggctaattttgtattattagtagagacggggtttcaccatgttgcccaggctggtGCTTGCTTTATTAAGCTGGTTAAGGACATGTagatggcattgagcaaaggcctgaacaggagagaatctgtgaaatgtctcagggaacagcatttcaggTGATGACTTTAGAAGGGCATGCAGATCATATAGACTTAGGCTTGCTTTACTAATCGTGGTGGAACAGACATTAACATGAAAGTTGATCATGTTAACCATT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46877633 278 +  50890351 atcacaggc---taatgcaccaccacgcccagctaattttg---tattagtagagacggggtttcaccatgttgcccaggctggtGCTTGCTTTATTAAGCTGGTTAAGGACATGTAGATGGCATTGAGCAAAGGCCTGAACAGGAGAGAATATGTAAAATGTCTCAGGGAACAGCATTTCAGGTGATGACTTTAGAAGGGCATGCAGATCATATAGACTTAGGCTTACTTTACTAATTGTGGTGGAACAGACATTAACATGAAAGTTGATCATCTTAACCATT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45462812 279 +  49145316 atcacagtc-----atgcgccaccatgcagggctaattttgtatttttagtagagaccaggtttccccatgtgggccaggctggtGCTTGCTTTATTAAGCTGGTCAAGGACGTTTAGGTAGCATTAAGCAAAGGCCTGAACAGGAGAGAATCTGTTAAATGTCTCAGGGGACAGCATTTCAGTTGATGACTTGGGAGGGGTATGCAGGTCATACAGACTTCGGCTTACTTTACTAACTGTGGTGAAATAGACGTTAAGATGAAAATCTGTCGTCTTAACCATT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102989981 483 + 122678785 I
e papAnu2.chr19              47170785 1331 +  51301725 M

a score=233549.000000
s hg38.chr19_GL949751v2_alt    177582 82 +   1002683 ttG---TTTTAAAATCTACTCTGAGATGCGGTGTTATTGGAGTGCTTTCTACAGCAGATTGGCATGACCAAGATTGGCATTTGTA
s panTro4.chr19              59110278 82 +  63644993 ttG---TTTTAAAATCTACTCTGAGATGCGGTGTTATTGGAGTGCTTTCTACAGCAGATTGGCATGACCAAGATTGGCATTAGTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55987657 82 +  60714840 TTG---TTTTAAAATCTGCTCTGAGATGCGGTGTTATTGGAGTGCTTTCTACAGCAGATTGGCATGACCAAGATTGGCATTAGTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102757351 80 - 106955855 TTG---TTTGAAAGTCTACTCTGAGATGC--TGTTATTGGAGTGCTTTCTACAGCAGATTGGCATGACCGAGATTGGCGTTAGTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60044528 82 +  64156825 TTG---TTTTAAAATTTACTCTGAGATGCGGTGTTATTGGAGTGCTTTCTACGGCAGATTGGCGTGACCAAGATTGGCATTAGTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55070057 82 +  59248254 TTG---TTTTAAAATTTACTCTGAGATGCGGTGTTATTGGAGTGCTTTCTACGGCAGATTGGCATGACCAAGATTGGCATTAGTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47172117 82 +  51301725 TTG---TTTTAAAATCTACTCTGAGATGCAGTGTTATTGGAGTGCTTTCTACAGCAGATTGGCATGACCAAGATTGGCATTAGTA
i papAnu2.chr19             M 1331 C 0
s chlSab2.chr6               46877911 82 +  50890351 TTG---TTTTAAAATCTACTCTGAGATGCGGTGTTATTGGAGTGCTTTCTACAGCAGATTGGCATGACCAAGATTGGCATTAGTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45463091 85 +  49145316 TAGGATCTTGAGCTTCTGCTCTGAGACGCGGTGTTGCTGGAGTGCTTTCTACAGCAGACTGGCACCCCTGAGACGGACATTAGTA
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102989981 483 + 122678785 I

a score=531398.000000
s hg38.chr19_GL949751v2_alt    177664 194 +   1002683 TATCCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGATTTATGGTGAAAAGCAGTCTCTACACCTGAGCCCTGACTGTTA-GGCAT--GAGAGTGGTCATCCATGTTAGGCGTTGAGAAAGTCCTGGCGCATGTTTAGCTACAGATTATCACAGTTTGT-CCCAGGCTTGCAGATGTTAGAAGC------------------tt--tttcttt
s panTro4.chr19              59110360 194 +  63644993 TATCCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGATTTATGGTGAAAAGCAGTCTCTACACCTGAGCCCTGACTGTTA-GGCAT--GAGAGTGGTCATCCATGTTAGGCGTTGAGAAAGTCCTGGAGCATGTTTAGCCACAGATTGTCACAGTTTGT-CCCAGGCTTGCAGATGTTAGAAGC------------------tt--tttcttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55987739 195 +  60714840 TATTCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGATTTATGGTGAAAAGCAGTCTCTACGCCTGAGCCCTGACTGTTGTGGCAT--GAGAGTGGTCGTCCATATTAGGTGTTGAGAAAGTCCTGGAGCATGTTTAGCCACAGATTATCACAGTTTGT-CCCAGGCTTGCAGATGTTAGAAGC------------------tt--tttcttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102757431 194 - 106955855 TATCCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGACTTATGGTGAAAAGCAGTCTCTACACCTGAGCCCTGACTGTTA-AGCAT--GAGAGGGGTCATCCATATTAGGCATTGAGAAAGTCCTGGAGCATGTTTAGCCACAGATTATCACAGTTTGT-CCCAGGTTTGCAGATGTTAGAAGC------------------tt--tttttta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60044610 210 +  64156825 TTTCCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGATTTGTGGTGAAAAGCAGTCTCTGCACCTGAGCCCTGAC--TGA-GGCAT--GAGAGTGGTCATCCACGTTAGGCATTGAGAAGGTCCTGGAGCATGCTTAGCCACAGATTATCGCAGTTTGA-CCCGGGCTTGCAGATGTTAGAAGCtttttttttttttttttttt--ttttttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55070139 206 +  59248254 TTTCCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGATTTGTGGTGAAAAGCAGTCTCTGCACCTGAGCCCTGAC--TGA-GGCAT--GAGAGTGGTCATCCACGTTAGGCATTGAGAAGGTCCTGGAGCATGCTTAGCCACAGATTATCGCAGTTTGA-CCCGGGCTTGCAGATGTTAGAAGC----TTTTTTTTTTTttttt--ttttttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47172199 198 +  51301725 TATTCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCATGATTTGTGGTGAAAATCAGTCTCTGCACCTGAGCCCTGACTGTGA-GGCAT--GAGAGTGGCCATCCATAGGAGGCATTGAGAAGGTCCTGGAGCATGCTTAGCCACAGATTATCGCAGTTTGACCCCGGGCTTGCAGATgttagaagc---------------ttttt--ttttttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46877993 208 +  50890351 TATCCTGAGACGCTGCTTT-TGCCTGAGTTTGGGTAGTCGTGATTTGTGGTGAAAAGCAGTCTCTGCACCTGAGCCCTGACTGTGA-GGCAT--GAGAGTGGTCATCCATATTAGGCATTGAGAAAGTCCCGGAGCATGCTTAGCCACAGATTATCGCAGTTTGA-CCTGGGCTTGCAGATGTTAGAAGC----CTTTTTTTTTTttttt--ttttttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45463176 193 +  49145316 TATCCTGAGACGCTGCATT-TGCCTGCGCTTGGGTAGTCATGATTTATGGTGAAGAGCAGAGTCTGCACCTGAGCCCTGACTGTTA-GGCGTCAGAGAGCGGTTGTCCATATTGGACAT------------GGAGCGTGCTTAGCCACAGATTATCACAG--TGC-CCCAGGCCTGCGGATGTTACAAGC-------TTTCTtttctttt--ctttttt
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102990464 121 + 122678785 TATCCT--GATGTTGCTTTGGGCCTGAGCTTAGGGAATCTTGGTTTATGGTGAAAGGCAG-----------GAG-------------GGGCT--GGGAATA-----------------------------------ATGCCTGGT---------------TTTTT-CCTGAGTTTTCAAA-GTTACTAGT------------------TTGATTTCTTT
i canFam3.chr1              I 483 I 110
e mm10.chr7                   3704779 907 + 145441459 I

a score=374450.000000
s hg38.chr19_GL949751v2_alt    177858 147 +   1002683 aaata--------ggcacaggatcttgcagtgttgacc-----aggatggtttccaactcctaacctcaagtgatccatccacctcagctttccaaagtgctggggttacaggtgtaagccaccgcacctgaccCTTTCATTCTTTTCGTCAATTTGTAG
s panTro4.chr19              59110554 147 +  63644993 aaata--------ggcacaggatcttgcagtgttgccc-----aggatggtttccaactcctaacctcaagtgatccttccacctcagctttccatagtgctggggttacaggtgtaagccaccgcacctgaccCTTTCATTCTTTTCGTCAATTTGTAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55987934 147 +  60714840 aaata--------ggcataggatcttgcagtgttgccc-----agggtggtttccaactactgacctcaagtgatccttccgcctcaggtttccatagtgctggggttacaggtgtaagccaccgcacctgaccCTTTCATTCTTTTCGTCGATTTGTAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102757625 134 - 106955855 aaata--------ggcacaggatcttgcagtgttgccc-----aggatggtttccaactcctgacctcaagtgatcc-------------ttccatagtgctggggttacaggtgtaagccactgcacctgaccCTTTCATTCTTTTCGTCAATTTGTAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60044820 147 +  64156825 aaata--------ggcacaggatcttgcattgttgccc-----aggatggtttccaactcctggcctcaagtgatccttccacctcagccttaaatagtgctggggttccaggtgtaagccactgcacctgaccCTTTCATTCTTTTTGTCAATTTGTAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55070345 147 +  59248254 aaata--------ggcacaggatcttgcattgttgccc-----aggatggtttccaactcctggcctcaagtgatccttccacctcaaccttaaatagtgctggggttccaggtgtaagccactgcacctgaccCTTTCATTCTTTTTGTCAATTTGTAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47172397 130 +  51301725 aaaaaaaaaaaaNGGCACAGGATCTTGcattgttgccc-----aggatggtttccaactcctggcctcaagtgatccttccgcctcagccttaAATAG-------------------------TGCACCTGaccctttcattctttttgtcaATTTGTAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46878201 147 +  50890351 aaata--------ggcacaggatcttgcattgttgccc-----aggatggtttccaactcctggcctcaagtgatccttccgcctcagccttaaatagtgctggggttccaggtgtaagccactgcacctgaccCTTTCATTCTTTTTGTCAATTTGTAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45463369 134 +  49145316 aaata--------gggacaggatcttgcaatgttgcccaggataggatggtttccaactcctggcctca------------------gccttgcaaagtgctggaattacaggtgtaagccactgcaccagaccCTTTCACTCTTTTTCTTAGATTGTAG
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102990585 110 + 122678785 I

a score=1285342.000000
s hg38.chr19_GL949751v2_alt    178005 445 +   1002683 ACCCCGTTGATAATCTCATGAAAGTGCTGGAGATCCCTCCCCCATAGATACTGATGCT-GGGTGGGAATTCATCCCAGGGTTCTGTGGGGAGTGGGC--TATAGCTGGTTCTGGTTTTAGGGAGGACTTTCTGGACATAGATCCTAATTGCAATGAAACTTACAGTCATGTGAGAAAGCGGTGCAGGTGTCTGAGGGTTATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAAGGGGTACACAGTTGTTCAGGTGAGTACACTTTCTAGTAAATGAAGCCATCTAGCCTAGTCAGGGACAGGAA-GGAGGAG-CTTGGA-----TGTTTGCTCTTTGGTGTAATCCTGCCTTGAT------TCAGATCCAGCCTTTCCCACTAAGATGTGTGACT------AGCGAGATTCTGAGTCTC-GTCTGTT---AAGACTG--------AACAG-CCGCCAACATTTGGCTGGCAGTTAAT
s panTro4.chr19              59110701 445 +  63644993 ACCCCGTTGGCAATCTCATGAAAGTGCTGGAGATCCCTCCCCCATAGATACTGATGCT-GGGTGGGAATTCATCCCAGGGTTCTGTGGGGAGTGGGC--TACAGCTGGTTCTGGTTTTAGGGAGGACTTTCTGGACATAGATCCTAATTGCAATGAAACTTACAGTCATGTGAGAAAGCGGTGCAGGTGTCTGAGGGTTATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAAGGGGTACACAGTTGTTCAGGTGAGTACGCTTTCTAGTAAATGAAGCCATCTAGCCTAGTCAGGGACAGGAA-GGAGGAG-CTTGGA-----TGTTTGCTCTTTGGTGTAATCCTGCCTTGAT------TCAGATCCAGCCTTTCCCACTAAGATGTGTGACT------AGCGAGATTCTGAGTCTC-GTCTGTT---AAGACTG--------AACAG-CCGCCAACATTTGGCTGGCAGTTAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55988081 446 +  60714840 ACCCCGTTGACAATCTCATGAAAGTGCTGGAGATCCCTCCCCCATAGATACTGATGCT-GGGTGGGAATTCATCCCAGGGTTCTGTGAGGAGTGGGC--TACAGCTGGTTCTGGTTTTAGGGAGGACTTTCTGAATATAGATCCTAATTGCAGTGAAACTTACAGTCATGTGAGAAAGCGGTGCAGGTGTCTGAGGGTTATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAAGGGGTACACAGCTGTTAAGGTGAGTACACTTTCTAGTAAATGAAGCCATTTAGCCTAGCCAGGGACAGGAA-GGAGGAG-CTTGGA-----TGTTTGCTctttggtgtaatcctgccttgat------tcagatccagcctttcccactaagctgtgtgact------ggcgagattctgagtctcagtctgtT---AAGACTG--------AACAG-CCGCCAACATTTGGCTGGCAGTTAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102757759 437 - 106955855 ACCCTGTTGACAATCTCATGAACGTGCTGGAGATCCCTCCCCCATGGATACCGATGCT-GGGTGGGAGTTCATCCCAGAGTTCTGTGGGGAGTGGGC--TACAGCTGGTTCTGGTTTTAGGGAGGAC-TTCTAGATATAGATCCTAATTGCAATGAAACTT--AGTCATGTGGGAAAGCGGTGCAGATGTCTGAGGGTTATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAAGGGGTACACAGCTGTTCAGGTGAGTACACTTTCTAGTAAATGAAGCCATCTAGCCTAGCCAGGGACAGGAA-GGAGGAG-CTTGGA-----TGTTTGCTCTTTGGTGTAATCCTGCCTTGAT------TCAGATCCAGCCTTTCCCACTAAGATGTGTGACT------GGCGAGAT--TGAGTCTT-GTCTGTT---AAGACTG--------AACAG-CCGCCAACATTTGGCTGGCAGT---T
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60044967 441 +  64156825 ACCCCGTTGACAATCTCATGAAAGTGCTGGAGATCCCTCCCCCGTGGATACTGATACT-GGGTGGGAGTTTATCCCAGAGTCCTGTGGGGAGTGGGC--TACAGCTGGCTCTGGTTTTAGGGAGGACTTTCCGAATATAGAGCCTAATCGCAATGAAACTT--AGTCATGTGAGAAAGCGGTGCAGGTGTCTGAGGGATATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAGGGGGTAGACAGCTGTTCAGGTAAGTACACTTTCTAGTAAATGAAACCCTCTAGCCTAGCCAGGGACGGGAA-GGAGGAG-CTTGGA-----TGTTTGCTCTTTGGTGTAATCCTGCCTTGAT------TCAGATCCAGCCTTTCCCACTAA--CGTGTGACA------GGCGAGATTCTGAGTCTC-ATCTGGTA-AAAGACTG--------AACAGCCCGCTAACATTTGGCTGGCAGT---T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55070492 441 +  59248254 ACCCCGTTGACAATCTCATGAAAGTGCTGGAGATCCCTCCCCCGTGGATACTGATACT-GGGTGGGAGTTTATCCCAGAGTCCTGTGGGGAGTGGGC--TACAGCTGGCTCTGGTTTTAGGGAGGACTTTCCGAATATAGAGCCTAATCGCAATGAAACTT--AGTCATGTGAGAAAGCGGTGCAGGTGTCTGAGGGATATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAGGGGGTAGACAGCTGTTCAGGTAAGTACACTTTCTAGTAAATGAAACCCTCTAGCCTAGCCAGGGACGGGAA-GGAGGAG-CTTGGA-----TGTTTGCTCTTTGGTGTAATCCTGCCTTGAT------TCAGATCCAGCCTTTCCCACTAA--CGTGTGACA------GGCGAGATTCTGAGTCTC-ATCTGGTA-AAAGACTG--------AACAGCCCGCTAACATTTGGCTGGCAGT---T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47172527 440 +  51301725 ACCCCGTTGACAATCTCATGAAAGTGCTGGAGATCCCTCCCCCGTGGATACTGATACT-GGGTGGGAGTTTATCCCAGAGTCCTGTGGGGAGTGGGC--TACAGCTGGCTCTGGTTTTAGGGAGGACTTTCTGAATATAGAGCCTAATCGAAATGAAACTT--AGTCATGTGAGAGAGCGGTGCAGGTGTCAGAGGGATATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAGGGGGTAGACAGCTGTTCAGGTAAGTACACTTTCTAGTAAATGAAACCCTCTAGCCTAGCCAGGGACAGGAA-GGAGGAG-CTTGGA-----TGTTTGCTCTTTGGTGTAATCCTGCCTTGAT------TCAGATCCAGCCTTTCCCACTAA--CGTGTGACT------GGCGAGATTCGGAGTCTC-ATCTGTTA-AAAGACTG--------AACAG-CCGCAAACATTTGGCTGGCAGT---T
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46878348 437 +  50890351 ACCCCGTTGACAATCTCATGAAAGTGCTGGAGATCCCTCCCCCGTGGATACTGATACT-GGGTGGGAGTTTATCCCAGAGTCCTGTGGGGAGTGGGC--TACAGCTGGCTCTGGTTTTAGGGAGGACTTTCTGAATATAGAGCCTAATCGCAATGAAACTT--AGTCACGTGAGAACGCGGTGCAGGTGTCTGAGGGATATTTGTGGTTTTCCAAGGCAGAAGTGAA--AATTCCCAGGGGGTAGACAGCTGTTCAGGTAAGTATACTTTCTAGTAAATGAAACCCTCTAGCCTAGCCAGGGACGGGAA-GGAGGAG-CTTGGA--------TTGCTCTTTGGTGTAATCCCGCCTTGAT------TCAGATCCAGCCTTTCCCACTAA--CGTGTGACT------GGCGAGATTCTGAGTCTC-ATCTGTTA-AAAGACTG--------AACAG-CCGCTAACATTTGGCTGGCAGT---T
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45463503 445 +  49145316 CCCCCTTTGACAATTTCATGAAAGTGCTGGAGTTGCC-AGCCCAAGGTTACTAATAATCGGATGGGAGTTTATCCCAGAGTCCTGTGGCAAGTGGGCTATACAGCTGGTTCTGGTTTTAGGGAGGACTTTGTTCATATAGAGCCTAATAGCAATGAAATTT--AGTCATGTGAGAA-GCGGTGTAGGTGTCTGAGGGTTATTTGTGGTTTTCCAAGGGAGAAGTGAA--AGATCCCAAGGGGCAGACAGCTCTTTAGGTTGGTACACTTTCTAGTAAGTGAAGCCATCTAGCCTAGCCAGGGGCAGGAAGGGAGGAG-CTTTGA-----TGTTTGCTCTTTGGTGTAGTCGTGCCTTGAT------TCAGATCCAGCATTTCCCACTAA--CGTGTGACT------AGCAAGAT-CTGAGTCTC-ATCTGTTAGAAAGATTG--------AACAG-CTGTTAACGTTTGGCTGACAGTTAAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102990695 419 + 122678785 ACCCAGTT---------CTGAAAATTCAGGAATCCCCTCCCCT----ATCCCACAGCT-AGTTGAAAGTGGA----GGAACTTTGTGAAGA--------TAGAGCTAGGTCAGGTCCTTGGTTGGA---------------------------TAAGCATT--CGTGTGGTGGGGTTGAGCAGCAGGTAACCCAGGAGTACTTGTGGTTCCCTGTGGCAGAAGAGGAGTGAGTTACAGGAGGTAGGCAGCACCACAGGTT-GTAGGCTTTCAAGTAAATAAGGCATTTAACTCCA---AGGGACAAGAA-GGAGGAACCCTGGAAGCTCTGCCAGTCTATTGGAGAGGTGTCTCACTCATAGAGCCTGGGGTCCAATCCATCCCACCGAGGCCTATGACTTTGGGCAGAAAACTTCTCTG-CTT-GCCTGTTCAAGAGACTGACTCTTAAACCAA-CAGCCAACATGTGGCAGAGGGTTCAT
i canFam3.chr1              I 110 I 30
e mm10.chr7                   3704779 907 + 145441459 I

a score=485882.000000
s hg38.chr19_GL949751v2_alt    178450 190 +   1002683 AATCAACAGATAGAggccaggcgtggtggctcatgcctgtaatcccagcactttgggagaccgaggtggtcggatcacttgaggtcaggagacctcaagtcagagaccagcctggccaacgtggtgaaattccatctctacgaaaaatacaaaaattagccgagcatggtggtgt--gcctataatcccagc
s panTro4.chr19              59111146 182 +  63644993 AATCAACAGATAGAggccaggcgtggtggctcatgcctgtaatcccagcactttgggagaccgaggtggtcggatcacttgaggtcagg--------agttcgagaccagcctggccaatgtggtgaaattccatctctacgaaaaatacaaaaattagccgagcatggtggtgt--gcctataatcccagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55988527 182 +  60714840 AATCAACAGATAGAggccaggcgtggtggcttatgcctgtaaccccagcactttgggagaccgaggtggtcggatcacttgaggtcagg--------agtttgagaccagcctggccaacatggtgaaattcgatctctacgaaaaatacaaaaattagccgggcatggtggtgt--gcctgtaatcccagc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102758196 182 - 106955855 AATCAACAGATAGAggcccggcgtagtggctcatgcctgtaatcccagcactttgggagaccgaggtggtcggatcacttgaggtcagg--------agttcgagaccaccctggccgacatggtgaaattccatctccacgaaaaatacaaaaattagccgggcatggtggtgt--gcctataatcccagc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60045408 182 +  64156825 AACCAACAGATAGAggccaggcgcggtggctcatgcctgtaatcccagcactttgggagaccgaggtggtccgatctcttgaggtcagg--------agttggagactagcctggccaacatggtgaaattccatctctactaaaaatacaaaaattagccgggcctggtgttgg--tcctgtaatcccagc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55070933 182 +  59248254 AACCAACAGATAGAggccaggcgcggtggctcatgcctgtaatcccagcactttgggagaccgaggtggtccgatcacttgaggtcagg--------agttggagactagcctggccaacatggtgaaattccatctctactaaaaatacaaaaattagccgggcctggtggtgg--tcctgtaatcccagc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47172967 182 +  51301725 AACCAACAgatagaggccaggcgcggtggctcatgcctgtaatcccagcactttgggagaccgaggtggtcccatcacttgaggtcagg--------agttggagactagcctggccaacatggtgaaattccatctctactaaaaatacaaaaattagccgggcctggtggtgg--tcctgtaatcccagc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46878785 182 +  50890351 AACCAACAGATAGAggccaggcgcggtggctcatgcctgtaatcccagcactttgggagaccgaggtggtccgatcacttgaggtcagg--------agttggagactagcctggccaacatggtgaaattccatctctactaaaaatacaaaaattagctgggcctggtggtgg--tcctgtaatcccagc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45463948 135 +  49145316 AACCAAC----Agaggccgggc--------------------------------gggaga-------------atcacctgaggttaag--------agttcaagaccagcctggccaacatggtgaaaccccatctttactaaaagtacaaaaattagctggatgtggtggggggcgcctgtatttccagc
i calJac3.chr22             C 0 I 19
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102991114  30 + 122678785 I

a score=209023.000000
s hg38.chr19_GL949751v2_alt    178640 132 +   1002683 tactcgggaggctgaggcaggagaattgattgaacctgggagacagagactgcagtgagccgagatccgcggcactgcac-------tgggtgacagcgagac-----------AC-AAAACAACACGAACTCCCCCCCCACCCCCCAGCA
s panTro4.chr19              59111328 129 +  63644993 tactcgggaggctgaggcaggagaattgattgaacttgggagacggagattgcagtgagccaagatccgcgacactgcac-------tgggtgacagcgagac-----------AC-AAAACAACACGAACTCCCCCC---CCCCCCAGCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55988709 132 +  60714840 tactcgggaggctgaggcaggagaattgattgaacctgggagacagagattgcagtgagccgagatccgcggcactgcac-------tgtgtgacagcgagac------tcaaaac-aaaaaaacacaaaCTACCC-----ACCTCCAGCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102758378 126 - 106955855 tactcaggaggcagaggcaggagaattgattgaacctgggagatggcgattgcagtgagccaagatccgcggcactgcac-------tgggtgacagcgagac-----------tcaaaaaaaaCACGAATTTC-------CCCCTCAGCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60045590 126 +  64156825 tactcgagaggctgaggcgggagaattgatcgaacctgggagacgga-----------------atccgcggcactgtgctccagcttgggtgacagcgagactccatctcaaaacaaaaaaaTCAGGAATT-C-------ACCCTCAGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55071115 126 +  59248254 tactcgagaggctgaggcgggagaattgatcgaacctgggagacgga-----------------atccgcggcactgtgctccagcttgggtgacagcgagactccatctcaaaacaaaaaaaTCAGGAATT-C-------ACCCTCAGCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47173149 127 +  51301725 tactcgggaggctgagacaggagaattgatcgaacctgggagacgga-----------------atcCCCggcactgtgctccagcttgggtgacagcgagactccatctcaaaacaaaaaaatcaggaatTCC-------ACCCTCAGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46878967 127 +  50890351 tactcgggaggcggaggcgggagaattgatcgaacctgggagacgga-----------------atccgcagcactgcactccagcttgggtgacagcgagactccatctcaaaacaaaaaaaTCAGGAATTCC-------ACCCTCAGCA
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102991114  30 + 122678785 I
e calJac3.chr22              45464083  19 +  49145316 I

a score=74518.000000
s hg38.chr19_GL949751v2_alt    178772 30 +   1002683 CAACTGTGAAGAAATGTAGGAGTCATGTCC
s panTro4.chr19              59111457 30 +  63644993 CAACTGTGAAGAAATGTAGGAGTCATGTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55988841 30 +  60714840 CAACTGTGAAGAAATGTAGGAGTCATGTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102758504 30 - 106955855 CAACTGTGAAGAAATGTAGGAGTCATGTCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60045716 30 +  64156825 CAACTGTGAATAAATGTGGGAATCATGTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55071241 30 +  59248254 CAACTGTGAATAAATGTGGGAATCATGTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47173276 30 +  51301725 CAACTGTGAATAAATGTAGAAATCATATCC
i papAnu2.chr19             C 0 I 1499
s chlSab2.chr6               46879094 30 +  50890351 CAATTGTGAATAAATGTAGGAATCATGTCC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              102991144 28 + 122678785 cagccgtaaagaaact--ggtattgcatcc
i canFam3.chr1              I 30 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e calJac3.chr22              45464083 19 +  49145316 I

a score=502350.000000
s hg38.chr19_GL949751v2_alt    178802 270 +   1002683 ATTTTTCAGATCAGAAATGAAGGCATTGTAATACCTAACTGCCTTGTAT---GATGACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTAAAGCATTTTAAATTCTCTTGGTGCATTGGCCCAGTGGAGC-------------CTCAGCAGTAGGACATGCTTTTGTTGAAGGTGTAAGGTTTAT----TGTGCTGTTGAAAACTATT---GTCTTCATACTTA---AAGGTTTTGCCTGTGGCTGAC--TCTCCTGTTCTTTTTCAGGAGATAGATGGTTCAATA
s panTro4.chr19              59111487 270 +  63644993 ATTTTTCAGATAAGAAATGAAGGCATTGTAATACCTGACTGCCTTGTAT---GATGACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTAAAGCATTTTAAATTCTCTTGGTGCATTGGCCCAGCGGAGC-------------CTCAGCAGTAGGACATGCTTTTGTTGAAGGTGTAAGGTTTAT----TGTGCTGTTGAAAACTATT---GTCTTCATACTTA---AAGGTTTTGCCTGTGGCTGAC--TCTCCTGTTCTTTTTCAGGAGATAGATGGTTTAATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55988871 270 +  60714840 ATTTTTCAGATCAGAAATGAAGGCATTGTAATACCTAACTGCCTTGTAT---GATGACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTAAAGCATTTTAAATTTTCTTGGTGCATTGGCCCAGCGGAGC-------------CTCAGCAGTAGGACATGCTTTTGTTGATGGTGTAAGGTTTAT----TGTGCTGTTGAAAACTATT---GTCTTCATACTTA---AAGGTTTTGCCTGTGGCTGAC--CCTCCTGTTCTTTTTCAGGAGATAGATGGTTTAATA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102758534 270 - 106955855 ATTTTTCAGATCAGAAAGGAAGGCGTTGTAATACCTAATTGCTTTGTAT---GAGGACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTACAGTATTTTAAATTCTCCTGGCGCATTGGCCCAGTGGCGC-------------CTCAGCAGCAGGACATGCTTTTGTTGCAGGTGTAAGGTTTAT----TGTGCTGTTGAAAACTACT---GTCTTCATACTTA---AAGGTTTTGCCTGTGGCTGAC--CTTCGTGTTCTTTTTCAGGAGATAGATGGTTTAATA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60045746 276 +  64156825 ATTTTTCAGATCAGAAATGAAGGCGTTGTAATACC----TGCCTTGTAT------GACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTAAAGCATTTTAAATTCTCTCGGTGCATTGGCCCAGCGGAGCCCGTGTAACAGTACTCAGTAGCAGGACATGGTTTTGTTGAAGGTGTAAGGTTTAT----TGTGCTGTTGAAAACTATT---GTCTTCATACTTC---AAGGTTTTGCCTGTGGTTGAC--TCTTCTGTTCTTTTTCAGGAGATAGATGGGTTAATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55071271 276 +  59248254 ATTTTTCAGATCAGAAATGAAGGCGTTGTAATACC----TGCCTTGTAT------GACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTAAAGCATTTTAAATTCTCTCGGTGCATTGGCCCAGCGGAGCCCGTGTAACAGTACTCAGTAGCAGGACATGGTTTTGTTGAAGGTGTAAGGTTTAT----TGTGCTGTTGAAAACTATT---GTCTTCATACTTC---AAGGTTTTGCCTGTGGTTGAC--TCTTCTGTTCTTTTTCAGGAGATAGATGGGTTAATA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46879124 272 +  50890351 ATTTTTCAGATCAGAAATGAAGGCGTTGTAATACC----TGCCTCGTAT------GACAAGGAC--CTGTTTCCCACTGAG----GTCCTCCCTG-GTTTGCATTTTTAAAGCATTTTAAATTCTCTTGGTGCATTGGCCCAGCGGAGCCCGTGTAACAGTACTCAGTAGCAGGACATGATTTTGTTGAAGGTGTAAGGTTTAT----GGTGCTGTTGAAAACTGTT---GTCTTCATACTTA---AAGGTTTTGCCTGTGGTTGAC--TCTTCTGTTCTTTTTCAG----TAGATGGGTTAATA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              102991172 288 + 122678785 gtttttcagatcagaaactgaagtacTTGAGT-------TGCCTTGTGTCATGATGACAGGGAAAGACGTATGCGTCTGAGAATTGTCCTCATTGCTTTTACGTTTGTAAAATGTCCTGATTCTTGTT------TTGGCCAAACGGAGCCCACGTGATCT--TTCAGTGGTTGGACATACTCCTGTTGAAGATGCAAAGTTTATTCAGTGTGC-ATTGAAAATTATTTTAGTTCTTATATGTAGATAAGGCTGT-TCTGGTGTTGATGGGATGCTGGCTTTCCTCAGTGTGTAGGTGGTTTAATA
i canFam3.chr1              C 0 I 1810
e mm10.chr7                   3704779 907 + 145441459 I
e calJac3.chr22              45464083  19 +  49145316 I
e papAnu2.chr19              47173306 1499 +  51301725 I

a score=1281984.000000
s hg38.chr19_GL949751v2_alt    179072 763 +   1002683 AATGTGGGCctgagtgcagtggctcatgcctgtaatcccagcactttgggaggcagaggcaggcggatcacccgaggtcgggagtttgagactagcctgaccaaagtggagaaaccccttagtctctactgaaaa-aatacaaaattagcggggcgtggtggcgcatgcctgtaatcccaggctgaggcaggagaatcccaggaggcggagtttgcagtgagccgagatcacgccattgcactccagcctgggcaacgagagcgaaactctg---------------------------------tctcaaaaaTGATAATAAATGTGAAACAT--TTTTTTAAAATCATGCCTTTGTTTTGCCTAATGGTGACgatctca---ctttgtctcccgggctggagcacagtggcatggtcgtggctcactgcagcctggacctcctgtgcttaagtgatcctcctcagctctagtagctgggaccacaatccaccatgtaccaccatgcccagctaatttagttttac--ttttttgtttgttttggtacaaatgcggtctcactgtgttgccgaggctagtttcaaacttctggactcaactgatcctcctgcctcagcctcccaaaatattgggtttataggcCAGGCATAAGGGACTGTGCGTGGCttaagtttccattttctaatgtaaagacaaaaaggcgtgaagtgtccaaagaggtaaatgatcccaaactcattttcattgccttttggacatgtttttgtattttgatattcaggtgtttaaatatcctctgatg
s panTro4.chr19              59111757 763 +  63644993 AATGTGGGCctgagtgcagtggctcatgcctgtaatcccagcactttgagaggccaaggcaggcggatcacctgaggtcgggagtttgagactagcctgaccaaagtggagaaaccccctagtctctactgaaaa-aatacaaaattagcggggcgtggtggtgcatacctgtaatcccaggctgaggcaggagaatcccgggaggcggagtttgcagtgagccgagatcacgccattgcactccagcctgggcaacaagagcgaaactctg---------------------------------tctcaaaaaTGATAATAAATGTGAAACAT--TTTTTTAAAATCATGCCTTTGTTTTGCCTAATGGTGACgatctca---ctttgtctcccgggctggagcacagtggcatggtcgtggctcactgcagcctggacctcctgtgcttaagtgatcctcctcagctctagtagctgggaccacaatccaccatgtaccaccatgcccggctaatttagttttac--ttttttgtttgttttggtacaaatgcggtctcactatgttgccgaggctagtttcaaacttctggactcaactgatcctcctgcctcagcctcccaaattattgggtttataggcCAGGCATAAGGGACTGTGCGTGGCTTAAGTTTCCATTTTCTAATGTAAAGACAAAAAGGCGTGAAGTGTCCAAAGAGGTAAATGATCCCAGACTCATTTTCATCACCTTTTGGACGTGTTTTTGTATTTTGATATTCAGGTGTTTAAATATCCTCTGAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55989141 754 +  60714840 AATGTGggccag-gtgcagtggctcatgcctgtaatcccagcactttgggaggcagaggcaggtggatcacctgaggtcgggagtttgagactagcctgaccaaagtggagaagcgccctagtctctactgaaaa-aatacaaaattagctgggcgtggtggcacatgcctgtaatcccaggctgaggcaggagaatcccgggaggcggagtttgcagtgagccgagatcacgccattgcactccagcctgggcaacaagagggaaa--ctg---------------------------------tctcaaaaatgataataaaTGTGAAACA---TTTTTTAAAATCATG-CTTTGTTTTGCCTAATGATGATgatctca---ctttgtctcccaggctggagcacagtggcatggtcgtgggtcactgcaacctgga----ctgtgcttaagtgatcctcctcagctctagtagctgggaccgcaatccaccatgtaccaccatgcctggctaatttagttttac--ttttttgtttgttttggtacaaatgcggtctcactatgttgccaaggctagtttcaaacttctggactcaactgatcctcctgcctcagcctcccaaaatactgggtttataggccaggcataagatactgtgcctggctGAAGTTTCTATTTTCTAATGTAAAGACAGAAAGGCGTGAAGTGTCCAAAGAGGTAAATGATCCCGAACTCATTTTCATCACCTTTTGGACATGTTTTTGTATTTTGATATTCAGGTGTTTAAATATCCTCTGATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102758804 760 - 106955855 AATGTGggccgg-gtgcagtggctcacgcctgtaatcccagcactttgggaggcagaggcaggcggatcacctgaggtc-ggagtttgagactagcctgaccaaagtggagaaaccccctag--tctactaaaaa-aatacaaaattagccgggcgtggtggcgcatgcctgtaatcccaggctaaggcaaggcaatcccgggaggcggagtttgcagtgagccgagatcacaccattgcactccagcctgggcagcaagagcgaagctctg---------------------------------tctcaaaaaTGATGATAAATGTGAAACAC-ATTTTTAAAAATCATGCCTTTGTTGTGCCTAATGGTGATgatctca---ctttgtctcccaggccagagcacagtggcgtggtcgtggctcactgcagcctggacctcctgtgcctaagtgatcctcctcagctctagtagctgggaccacaatccaccatgtatcaccatgcctggctaatttagttttac--ttttttgtttgttttcgtacaaatgcggtctcactatgttgccgaggctagtttcaaacttctggactcaactgatcctcctgcctcagcctcccaaaatactgggttgataggccaggcataaggtactgtgcctggcTGAAGTTTCTATTTTCTAATGTAAAGACAAAAAGGTGTGAAGTGTCCAAAGAGGTAAATGATCCCAAACTCATTTTCATTGCCTTTTCGACATGTTTTTGTATTTTGATATTCAGGTGTTTAAATATCCTCTGGTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60046022 793 +  64156825 AATGTGggtcgg-gcgcggtggctcacacctgtaattccagcactttgggaggcaaaggcaggcggatcacctgaggtcaggagttcaagcccagcctgaacgacgtggagaaaccccctagtctctactaaaaacaatacaaaattagccggccatggtggtgtgtgcctgtaatcctaggctgagtcaggagaatcccgggaagcagagtttgcagtgagccgagatca--ccattgtactccagcccgggcaac--gagggaaactccgtctgaaaaaTGATTGGCAACGAGGGAAACTCCATCTGAAAAATGATAATAAATGTGAAACACTTTCTTTTTAAATCATGGCTTTATTTTGCGTAATGGTGATgatctca---ctttgtctcccaggctggagcacagtggcatggttgtggctcactgcaacctggaccgcctgtgcttaagtgatcctcctcagctctagtagctgggactgcaatccaccatgtaccaccatgcctggctaatttagttttcc--tttttt-tttgttttggtacaaatggggtctcactatgttgcccaggctggtttcaaacttctggactcaatcgatgctcctgcctcagcctcccaaaatactgggtttatagggcaggcataaggtactgtgcctggcTGAAGTTTCTATTTTCTAATGTAAACACAAAAAGGCATGAAGTGTCCAAGGAGGTAAATGATCCCAAACTCGTTTTCATTGCCTTTTGGACATGTTTTTGTATTTTGATATTCAGGTGTTTAAAAATTCTCTGATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55071547 760 +  59248254 AATGTGggttgg-gcgcggtggctcacacctgtaattccagcactttgggaggcaaaggcaggcggatcacctgaggtcgggagttcaagaccagcctgaacaacgtggagaaaccccctagtctctactaaaaacaatacagaattagccggccatggtggtgtgtgcctgtaatcctaggctgagtcaggagaatcccgggaagcagagtttgcagtgagccgagatca--ccattgtactccagcccgggcaac--gagggaaactccg---------------------------------tctgaaaaaTGATAATAAATGTGAAACACTTTCTTTTTAAATCATGGCTTTATTTTGCGTAATGGTGATgatctca---ctttgtctcccaggctggagcacagtggcatggtcgtggctcactgcaacctggaccgcctgtgcttaagtgatcctcctcagctctagtagctgggactgcaatccaccatgtaccaccatgcctggctaatttagttttcc--tttttt-tttgttttggtacaaatggggtctcactatgttgcccaggctggtttcaaacttctggactcaatcgatgctcctgcctcagcctcccaaaatactgggtttatagggcaggcataaggtactgtgcctggcTGAAGTTTCTATTTTctaatgtaaacacaaaaaggcatgaagtgtccaaggaggtaaatgatcccaaactcgttttcattgccttttggacatgtttttgtattttgatattcaggtgtttaaaaattctctgatg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46879396 765 +  50890351 AATGTGggtcgg-gcgcggtggctcacacctgtaattccagcactttgggaggcaaaggcaggcggatcacctgaggtcgggagttcaagaccagcctgaacaacgtggagaaaccccctagtctctactaaaaaaagtacaaaattagccaggcatggtggtgtgtgcctgtaatcctaggctgagtcaggagaatcccgggaagcggaatttgcagtgagccgagatca--ccattgtactccagcctgggcaac--gagggaaaatccg---------------------------------tctgaaaaatgataataaaTGTGAAACACTTTCTTTTCAAATCATGGCTTTATTTTGCCTAATGGTGATGTCTCCAAcgctttgtctcctaggctggagcacagtggcatggtcgtggctcactgcaacctggaccgcctgtgcttaagtgatcctcctcagctctagtagctgggactgcaatccaccatgtaccaccatgactggctaatttagttttcccttttttt-tttgttttggtacaaatggggtctcactatgttgcccaggctggtttcaaacttctggatgcaatcgatgctcctgcctcagcctcccaaaatactgggtttatagggcaggcataaggtactgtgcctggcTGAAGTTTCTATTTTctaatgtaaacacaaaaaggcatgaagtgtccaaggaggtaaatgatcccaaactcgttttcattgccttttggacatgtttttgtattttgatattcaggtgtttaaaaatcctctgatg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102991460 1810 + 122678785 I
e calJac3.chr22              45464083  19 +  49145316 I
e papAnu2.chr19              47173306 1499 +  51301725 I

a score=18134.000000
s hg38.chr19_GL949751v2_alt    179835 14 +   1002683 ttga--gtta----aaaaag
s panTro4.chr19              59112520 16 +  63644993 TTGAGTGTTA----AAAAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55989895 16 +  60714840 TTGAGTGTTA----AAAAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102759564 16 - 106955855 TTGAGTGTTA----AAAAAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60046815 18 +  64156825 TTGAGCATTAAA--AAAGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55072307 18 +  59248254 ttgagcattaaa--aaagag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47174805 13 +  51301725 -------ttaaaataaaaaa
i papAnu2.chr19             I 1499 C 0
s chlSab2.chr6               46880161 18 +  50890351 ttgagcattaaa--aaagag
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e canFam3.chr1              102991460 1810 + 122678785 I
e calJac3.chr22              45464083 19 +  49145316 I

a score=1677080.000000
s hg38.chr19_GL949751v2_alt    179849 736 +   1002683 aacaaaaattgaagccatagtatgacataggatgctggaaatgcacacagctggtgtt--tccattttgat----tctccctacctgtaactgctccctacTGGGAAAACTTT--GGGTCCTCACAAAGTGAGCTAGCTTTCTTTCAAACTTTGCTTGGAGGGT---AACAGTGCCAGGAATATCAGAAGTGCCTGATGCATGTAGATCTATTTATGAAAGCTTGCTTGAATGGTTTGCTGTAACTAGTAAGAGCCACTTTTTATAA--------AAGTGCAC---ATAAGGAAAAAAGGTTGAGGTGTTTACCCCA--GTCAAGGGGCAGTTGATTTGCTGAAGGCGTGTGGGATTATAGCAGTGAGCGGGAGCCTAGGGGATGGCGTTTGCCCCCAGGGCCCTGGGGCTGTGGGCAAGGGCAGT---CCAGAG-TATTAGCTAGAAGCCATGGCTTTGGACAGGGTAAGGAGCAAGCCGTCCTGAGCCTGGGGTTGGAAGAAAGGTGTAGTAG--GGCATCTGTTGGAT-ATTTTATGCAGTGC----ATTGTTAGGTTATATACATACTAGATCTATTTTTGGTGGAAAATTTTGTACAGAATAGTAAAATGAATGACATGTACTTAGC----TGGAAAAATTCTAGTGTTAGAAATTACTTTTCTCTC---CTTAAAAGATGTAGATACTGC--------TATTTATGGCAC--GGAATGTGATTCAATCTCACATCTGCTTAATCAGAA----GAGCTTTCTGGGCT-GAGGATATGAACTCTTCAGC
s panTro4.chr19              59112536 738 +  63644993 AACAAAAATTGAAGCCATAGTATGACATAGGATGCTGGAAATGCACACAGCTGGTGTT--TCCATTTTGAT----TCCCTCTACCTGTAACTGCTCCCTACTGGGAAAACTTT--GGGTCCTCACAAAGTGAGCTAGCTTTCTTTCAAACTTTGCTTGGAGGGT---AACAGTGCCAGGAATATCAGAAGTGCCTGATGCATATGGATCTATTTATGAAAGCTTGCATGAATGGTTTGCTGTAACTAGTAAGAGCCACTTTTTATAA--------AAGTGCAC---ATAAGGAAAAAAGGTTGAGGTGTTTACCCCA--GTCAAGGGGCAGTTGATTTGCTGAACGCGTGTGGGATTATAGCAGTGAGCGGGAGCCTAGGGGATGGCGTTTGCCCCCAGGGCCCTGGGGCTGTGGGCAAGGGCAGT---CCAGAG-TATTAGCTAGAAGCCATGGCTTTAGACAGGGTAAGGAGCAAGCCATCCTGAGCCTGGGGTTGGAAGAAAGGTGTAGTAGCTGGCATCTGTTGGAT-ATTTTATGCAGTGC----ATTCTTAGGTTATATACATACTAGATATATTTTTGGTGGAAAATTTCGTACAGAATAGTAAAATGAATGACATGTACTTAGC----TGGAAAAACTCTAGTGTTAGAAATTACTTTTCTCTC---CTTAAAAGGTGTAGATACTGC--------TATTTATGGCAC--GGAATGTGATTCAGTCTCACATCTGGTTAATCAGAA----GAGCTTTCTGGGCT-GAGGATATGAACTCTTCAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55989911 742 +  60714840 AACAAAAATTGAAGCCATAGTATGACATAAGATGCTGGAAATGTACACAGCTGGTGTT--TCCATTTTGAT----TCTCCCTACCTGTAACTGCTCCTTACTGGGAAAACTTT--GGGTCCTCACAAAGTGAGCTAGCTTTCTTTCAAACTTTGCTTGGAGGGT---AACAGTGCCAGGAATATCAGAAGTGCCTGATGCATGTGGATCTATTTATGAAAACTTGCTTGAATGGTTTGCTATAACTAGTAAGAGCCACTTTTTATAA--------AAGTGCAC---ATAAGGAAAAAAGTTTGAGGTGTTTACCCCAGTGTCAAGGGGCAGTTGATTTGCCGAACGCGTATGGGATTATAGCAGTGAGCGGGAGCCTAGGGGAAGGCGTTTGCCCCCAGGGCCCTGTGGCTGTGGGCAAGGGCAGT---CCAGAGTTATTAGCTAGAAGCCATGGCTTTGGACAGGGTAAGTTGCAAGTCGTCCTGAGCCTGGGGTTGGAAGAAAGGTATAGTAGCTGACATCTGTTGCAT-ATTTTTTGCAGTGC----ATTGTTAGGTTATATACATACTAGATATATTTTTGGTGCAAAATTTCATACAGAATAGTAAAATGAATGACATGTACTTAGC----TGGAAAAATTCTAGTGTTAGAAATTACTTTTGTCTC---CTTAAAAGGTGTAGATACTGC--------TA-TTATGGCACAGGGAATGTGATTGAATCTCACATCTGGTTAATCAGAA----GAGCTTTCTGGACT-GAGGATATGAACTCTTAAGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102759580 742 - 106955855 AACAAAAATTGAAGCCATAGTATGACATAGGTTGCTGGAAATGTACACGGCTGGTGTT--TCCATTTTGAT----TCTCCCTACCTGTAACTGCTCCCTACTGGGAAGAC--T--GGGTCCTCACAAAGTGAGCTAGCTTTCTTTCAAAC--TGCTTGGAGGGT---AACAGTGCCAGGAATATCAGAAGTGCCTGATGCATGTGGATCTATTTATGAAAGCTTGCTTGAATGGTTTGCTATAACTAGTAAGAGCCACTTTTTATAA--------AAGTGCAC---ATAAGGAAAAAAGTTTGAGGTGTTTACCCCAGTGTCAAGGGGCAGTTGATTTGCTGAACGCGTGTGGGATTATAGCAATGAGTGGGAGCCCAGGGGAAGGCGTTTGTCCCCGGGGCCCTGGGGCTGTGGGCAAGGGCAGT---CCAGAG-TATTAGCTAGAAGCCACGGCTTTGGACAGGGTAAGGAGCAAGCCGTCCTGAGCCT-GGGTTGGAAGAAAGGT---GTAGCTGACATATGTTGGAT-ATTTTATGCAGTGCATTGATTGTTACGTTATATACATACTATATATATTTTTGGTGGAAAATTTCATACAGAATAGTAAAATAAATGACATGTACTTAAC----TGGAAAAATTCTAGTGTTAGAAATTACTTTTCTCTT---CCTAAAAGGTGTAGATACTGC--------TATTTATGGCACAGGGAATGTGATTTAATCTCGCATCTGGTTAATCAGAAGAGCGAGCTTTCTGGACT-GAGGGGATGAACTCTTAAGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60046833 729 +  64156825 AACAAAAATTGAAGCCATAGTATGACACAGGATGCTGGAAAGGTACACAGCTGGTGTT--TCCATTTTGATTCTATCTCCCTACCTGTAACTGCTCCCTATTGGGAAGACTTT--GGGTCCTCAC--AGTCAGCTAGCTTTCTTTCAAACTTCGCTTGGAGGGTAACAACAGTGCCAGGAATATCAG-AGTGCCTGATGAATGTGGGTCTGTTTATTAAAGCTTGCTTGAATTGTTTGCTATAACTAGTAAGAGGCACTTTTTATAA--------AAGTGCACATAATAAGGAAAAAAGTTTGAGGTGTTTACCCCAGTGTCAAGGGGCAGTTGATTTGCTGAACGCGTACGGGATTATAGCAGTGAGTGGGATCCTACAGGAAGACATTTGCCTTGAC--------GGAGGTGGGCAGGGGGAGT---CCAGAG-TATTAGCTAGAAGCCATGGCTTTGGACAGGGTAAGGAGCAAGTTGTCCTGAGCCTGG------------GGTGTAGTAGCTGACATCTGTTGGAT-ATTTTATGCAGTGT----GTTGTTAGGTTATATACATACTGTGTATATTTTTAGTGGAAAATTTCATACAGAATAGTAAAATGAATGACATGTACTTAGC----TGGAAAAATTCTAGTGTTAGAAATTTCTTTTCTCTC---CCTAAAAGGTATAGGTACTGA--------TATTTATGGCATAGGGAATGTGATTTAATCTCACATCTGGTTAATCAGAA----GAGCTTTCTGGACT-CAGGATATGAACTCTCAACC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55072325 729 +  59248254 aacaaaaattgaagccatagtatgacacaggatgctggaaaggtacacagctggtgtt--tccattttgattctatctccctacctgtaactgctccctATTGGGAAGACTTT--GGGTCCTCAC--AGTCAGCTAGCTTTCTTTCAAACTTCGCTTGGAGGGTAACAACAGTGCCAGGAATATCAG-AGTGCCTGATGAATGTGGGTCTGTTTATTAAAGCTTGCTTGAATTGTTTGCTATAACTAGTAAGAGGCACTTTTTATAA--------AAGTGCACATAATAAGGAAAAAAGTTTGAGGTGTTTACCCCAGTGTCAAGGGGCAGTTGATTTGCTGAACGCGTACGGGATTATAGCAGTGAGTGGGATCCTACAGGAAGACATTTGCCTTGAC--------GGAGGTGGGCAGGGGGAGT---CCAGAG-TATTAGCTAGAAGCCATGGCTTTGGACAGGGTAAGGAGCAAGTTGTCCTGAGCCTGG------------GGTGTAGTAGCTGACATCTGTTGGAT-ATTTTATGCAGTGT----GTTGTTAGGTTATATACATACTGTGTATATTTTTAGTGGAAAATTTCATACAGAATAGTAAAATGAATGACATGTACTTAGC----TGGAAAAATTCTAGTGTTAGAAATTTCTTTTCTCTC---CCTAAAAGGTGTAGGTACTGA--------TATTTATGGCATAGGGAATGTGATTTAATCTCACATCTGGTTAATCAGAA----GAGCTTTCTGGACT-CAGGATATGAACTCTCAACC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47174818 731 +  51301725 aaaaaaaattgaagccatAGTATGACACAGGATGCTGGAAAGGTACACAGCTGGTGTT--TCCATTTTGATTCTATCTCCCTACCTGTAACTGCTCCCTATTGGGAAGACTTT--GGGTCCTCACAAAGTCAGCTAGCTTTCTTTCAAACTTCGCTTGGAGGGTGACAACAGTGCCAGGAATATCAG-AGTGCCTGATGAATGTGGGTCTGTTGATTAAAGCTTGCTTGAATTGTTTGCTATAACTAGTAAGAGGCACTTTTTATAA--------AAGTGCACATAATAAGGAAAAAAGTTTGAGGTGTTTACCCCAGTGTCAAGGGGCAGTTGATTTGCTGAACGCGTGTGGGATTATAGCAGTGAGTGGGATCCTACAGGAAGGCATTTGCCTTGAG--------GGAAGTGGGCAAGGGGAGT---CCAGAG-TATTAGCTAGAAGCCATGGCTTTGGACAGGGTAAGGAGCAAGTCGTCCTGAGCCTGG------------GGTGTAGTAGCTGACATCTGTTGGAT-ATTTTATGCAGTGT----GTTGTTAGGTTATATacatattgtgtatatttttagtggaaaatTTCATACAGAATAGTAAAATGAATGACATGTGCTTAGC----TGGAAAAATTCTAGtgttagaaatttcttttctctc---cctaaaAGGTGTAGGTACTGA--------TATTTATGGCATAGGGAATGTGATTTAATCTCACATCTGGTTAATCAGAA----GAGCTTTCTGGACT-CAGGATATGAACTCTCAACC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46880179 729 +  50890351 aacaaaaattgaagccatagtatgacacaggatgctggaaaggtatacagctggtgtt--tccattttga---aatctccctacctgtaactgctccctgTTGGGAAGACTTT--GGGTCCTCACAAAGTCAGCTAGCTTTCTTTCAAACTTTGCTTGGAGGGTAACAACAGTGCCAGGAATATCAGAAGTGCCTGATGAATGTGGGTCTATTTATTAAAGCTTGCTTGAATTGTTTGCTATAACTAGTAAGAGGCACTTTTTATAA--------AAGTGCACATAATAAGGAAAAAAGTTTGAGACACTTACCCCAGTGTCAAGGGGCAGTTGATTTGCTGAACGCGTGTGGGATTATAGCAGTGAGTGGGATCCTACAGGAAGGCATTTGCCTTGAG--------GGAGGTGGGCAAGGGGAGT---CCAGAG-TATTAGCTAGAAGCCATGGCTTTGGACAGGGTAAGGAGCAAGTCGTCCTGAGCCTGG------------GGTGTAGTAGCTGACATCTGTTGGAT-ATTTTATGCAGTGT----GTTGTTAGGTTATATACATACTGTGTATATTTTTAGTGGAAAATTTCATACAGAATAGTAAAATGAATGACATGTACTTGGC----TGAAAAAATTCTAGTGTTAGAAATTTCTTTTCTCTC---CCTAAAAGGTGTAGGTACTGA--------TATTTATGGCATAGGGAATGTGATTTAATCTCACATCTGGTTAATCAGAA----GAGCTTTCTGGACT-CAGGATATGAACTCTTAACC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              102993270 643 + 122678785 AAAAAAAAT----GCCATGTTACAATTTGGGGTATTGGGAA-------AGATAGTGTTTCTCCATTTTGATCCTATCTCTTTTCCATTAAGTG--------TGCTAAGACTTTCAGTGTCTTCATAAAGTCCTGCAGCTTTCCTTG------CGGGCAAGAGGT---CACGATGCAGAGAATATTGGAAATGACCAAT-AATATGG-------------AGCTTGCTTGAATAG-----------AAATAATGGTTACTTCATAACATCCTCTTTAAGGGAAA---GCAGGGGGGAAAGGGTTGGGCCTTTACCCCA-TGACAAGGT---GTTGATTTGCT--ATGAGTCTGTGGTAATCCCAGTGAGTATGAGCTCTGGGCCAGG-GTTTGCCCCCAGGGTCCT------------AAGGGCAGTCCCCCATGG-AGCCATCT-GGAGCCAT-----------GGACACATAGCAGGGCCTCCTGTGCCTGG------------GG---------------CTGCTGGGTCACTTCTTGCCATGC----ATTGTTAA---AACCACATG----ATAATTTTTTAGTGGAAAACCACAGGTAAAATAGTAAATCGAGTAACAGATACTCAAACACGTGG-------CCAGTTTGGGA-------TTTTTCTCAGGCCTAGAAA--CTAGGTACTGACAGTCTAGTATTATTGGTAAGGAGGGTGGTGTTTAGCCTCAGATCTGACTAGT----A----GGGCTTTTTTGACTGCAGCGGGTTAGCCCTTGACC
i canFam3.chr1              I 1810 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e calJac3.chr22              45464083  19 +  49145316 I

a score=241835.000000
s hg38.chr19_GL949751v2_alt    180585 83 +   1002683 ACTGTGCTTTGTT-ACGGTG-GTAGTAGCTTAATAGCAGCTGCATTTGGTCTTTTGCAG-----ACTGAGTCCTTGTAAGGAGGTGATTT
s panTro4.chr19              59113274 83 +  63644993 ACTGTGCTTTGTT-ACGGTG-GTAGTAGCTTAATAGTAGCTGCATTTGGTCTTTTGCAG-----ACTGAGTCCTTGTAAGGAGATGATTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55990653 82 +  60714840 ACTGTGCTTTGTT-ACGGTG-GTAGTAGCTTAATAGTAGCTGCATTTGGTC-TTTGCAG-----ACTGAGTCCTTGTAAGGAGATGATTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102760322 83 - 106955855 ACTGTGCTTTGTT-GCGGTG-GTAGTGGCTTAATAGCAGCTGCACTTGGTCTTTTGCAG-----ACTGAGTCCCTGTAAGGAGATGATTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60047562 84 +  64156825 ACTGTGCTTTGTTAACGGTG-GTAGTAGCTTAATAGCAGCTGCACTTGGTCTTTTGCAG-----ACTGAGTCCTTGTAAGGAGATGATTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073054 84 +  59248254 ACTGTGCTTTGTTAACGGTG-GTAGTAGCTTAATAGCAGCTGCACTTGGTCTTTTGCAG-----ACTGAGTCCTTGTAAGGAGATGATTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47175549 84 +  51301725 ACTGTGCTTTGTTAACGGTG-GTAGTAGCTTAATAGCAGCTGCACTTGGACTTTTGCAG-----ACTGAGTCCTTGTAAGGAGATGATTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46880908 82 +  50890351 AC--TGCTTTGTTAACAGTG-GTGGTAGCTTAATAGCAGCTGCACTTGGTCTTTTGCAG-----ACTGAGTCCTTGTAAGGAGATGATTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45464102 80 +  49145316 ACTGTGCTTTGTC-AGGGTG-GGAGGAGCTTAATCGCAGCTGCACTTGCTCTTTTGCAG-----ACTGAGTCGTTGTAAGGAAATCT---
i calJac3.chr22             I 19 C 0
s canFam3.chr1              102993913 82 + 122678785 ATTATG---TGTC-ACTGTGAGTAATGGTTTAGCAACAGCAGCA----GAGTTTTACAGGGGTTACTAAGTCCTTTTGCAGGGATTGTGT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I

a score=178787.000000
s hg38.chr19_GL949751v2_alt    180668 120 +   1002683 CCTTTACTCTTGCTAAGAATGTGGAGCGAGGGATG-TATGCTC-----TCAGATGAGGAGGCAGGTGTATTTTGCCCTCCTGTCATCTG-CAGTTTACTATGAATGATGACCTGACAACCATAGGGT
s panTro4.chr19              59113357  63 +  63644993 CCTTTACTCTTGCTAAGAATGTGGAGCGAGGGATGTTATGCTC-----TCAGA-----------------------------------------------------------TGACAGCCATAGGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55990735 121 +  60714840 CCTTTAGTCTTTCTAAGAATGTGGAGCGAGGGATGTTACATTC-----TCAGATGGGGAGGCAGGTGTATTTTGCCCTCCTGTCAGCTG-CAGTTTACTATGGATGATGACCTGACAACCATAGGGT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60047646 122 +  64156825 CCTTTACTGTTGTTAAGAATGTGGAGCGAGGGATGTGACACTC----TTCAGATGAGGAGGCAGGTATATTTTGCCCTCCTGTCACCTG-CACGTTACTATGGATGATGGCCTGACACCCATAGGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073138 122 +  59248254 CCTTTACTGTTGTTAAGAATGTGGAGCGAGGGATGTTACACTC----TTCAGATGAGGAGGCAGGTATATTTTGCCCTCCTGTCACCTG-CACGTTACTATGGATGATGGCCTGACACCCATAGGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47175633 122 +  51301725 CCTTTACTGTTGCTAAGAATGTGGAGCGAGGGATGTTACACTC----TTCAGATGAGGAGGCAGGTATATTTTGCCCTTCTATCACCTG-CAGGTTACTATGGATGATGGCCTGACACCCATAgggt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46880990 122 +  50890351 CCTTTACTGTTGCTACGAATGTGGAGCGAGGGATGTTACACTC----TTCAGATGAGGAGGCAGGTATATTTTGCCCTCCTGTCACCTG-CAGGTTACTATGGATGATGGCCTGACACCCATAGGGT
i chlSab2.chr6              C 0 I 38
s calJac3.chr22              45464182  99 +  49145316 CATTTACTCTTGCTAAGAATGTGGAGCAAAGGATGTTACATTT-----TCGGGTGTA-------------TTTGCCCTCCTGTCTCCTGCCAGGTTACTATGGA--------TGATAGCCATAGG--
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102993995 106 + 122678785 -CATTTCTCTC-CTGACAATTC----CAGGGAAGGTTCTACTCCTTTTTCAGATGAGAGCAGAGGTGTGTGTGGTCACCTGCCCTCCTT----GGTAAGATGGGTA------TGATCATTAT-----
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e nomLeu3.chr10             102760405   0 - 106955855 C

a score=-1423.000000
s hg38.chr19_GL949751v2_alt    180788 12 +   1002683 AGTTTGG-ttttt
s panTro4.chr19              59113420 12 +  63644993 AGTTTGG-ttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55990856 11 +  60714840 AGtttgt-tttt-
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60047768  7 +  64156825 -----GG-Ttgtg
i rheMac3.chr19             C 0 I 24
s macFas5.chr19              55073260  8 +  59248254 -----GGTTtgtg
i macFas5.chr19             C 0 I 4
s papAnu2.chr19              47175755  7 +  51301725 -----gg-ttttg
i papAnu2.chr19             C 0 I 2
s calJac3.chr22              45464281  9 +  49145316 ---CTGG-ttttt
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102994101 10 + 122678785 GATTTGC-CTT--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e nomLeu3.chr10             102760405  0 - 106955855 C
e chlSab2.chr6               46881112 38 +  50890351 I

a score=1260.000000
s hg38.chr19_GL949751v2_alt    180800 15 +   1002683 tgtattgttttgttt
s panTro4.chr19              59113432 15 +  63644993 tgtattgtttcgttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55990867 11 +  60714840 ----ttgttttgttt
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55073272 15 +  59248254 tgtgtgtgtgtgtgt
i macFas5.chr19             I 4 I 7
s papAnu2.chr19              47175764 15 +  51301725 tgtgtgtgtgtgtgt
i papAnu2.chr19             I 2 I 7
s calJac3.chr22              45464290  5 +  49145316 ----------tgtgt
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102994111  8 + 122678785 -----TGGATTGT--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e nomLeu3.chr10             102760405  0 - 106955855 C
e chlSab2.chr6               46881112 38 +  50890351 I
e rheMac3.chr19              60047775 24 +  64156825 I

a score=9133.000000
s hg38.chr19_GL949751v2_alt    180815 5 +   1002683 tgtga
s panTro4.chr19              59113447 5 +  63644993 tgtga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55990878 5 +  60714840 tgtga
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60047799 5 +  64156825 tgaga
i rheMac3.chr19             I 24 C 0
s macFas5.chr19              55073294 5 +  59248254 tgaga
i macFas5.chr19             I 7 C 0
s papAnu2.chr19              47175786 5 +  51301725 tgtga
i papAnu2.chr19             I 7 C 0
s calJac3.chr22              45464295 4 +  49145316 -gtga
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102994119 4 + 122678785 -GTGA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e nomLeu3.chr10             102760405 0 - 106955855 C
e chlSab2.chr6               46881112 38 +  50890351 I

a score=393117.000000
s hg38.chr19_GL949751v2_alt    180820 193 +   1002683 cagggcctcactc-tgtcgcccaggctggagtgcagtggccccatctcaggtcactgcaacctccgcctcctgggttcaagcagttttccttcctcagcctcctgaatagctgggattacaggcagtgcgccaacggcctggctaatttttcgtaatcttagtggagacgggctttcgccatgttggccgggct
s panTro4.chr19              59113452 193 +  63644993 cagggcctcactc-tgtcgcccaggctggagtgcagtggccccatctcaggtcactgcaacctccgcctcctgggttcaagcagttttccttcctcagcctcctgaatagctgggattacaggcagtgcgccaacggcctggctaatttttcgtaatcttagtggagacgggctttcgccatgttggctgggct
i panTro4.chr19             C 0 I 14
s ponAbe2.chr19              55990883 193 +  60714840 cagggtctcactc-tgttgcccaggctggagtgcagtggccccatctcaggtcactgcaacctccgcctcctggattcaagcagttttccttcctcagcctcctgaatagccgggattacaggcagtgcgccaacagcctggctaatttttcgtaatcttggtggagacggggtttcgccatgttggccaggcc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60047804 193 +  64156825 caggatctcactc-tgtttcccaggctggagtgcagtggtcccatctcaggtcactgcaacctccgcctccagggttcaagcaattttctttcctcagcctcctaaatagctgggattacaggcagtgtgccaacagcctggctaattttttgtatttttagtggagacagggtttcggcatgttggccaggtt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073299 193 +  59248254 caggatctcactc-tgtttcccaggctggagtgcagtggtcccatctcaggtcactgcaacctccgcctccagggttcaagcaattttctttcctcagcctcctaaatagctgggattacaggcagtgtgccaacagcctggctaattttttgtatttttagtggagacagggtttcggcatgttggccaggtt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47175791 193 +  51301725 caggatctcactc-tgtttcccaggctggagtgcagtggtcccatctcaggtcactgcaacctccgcctccagggttcaagcaattttctttcctcagcctcctgaatagctgggattacgggcagtGTGCCaacagcctggctaattttttgtatttttagtggagacagggtttcggcatgttggccaggtt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46881150 193 +  50890351 caggatctcactc-tgtgtcccaggctggagagcagtggtcccatctcaggtcactgcaacctccgcctccagggttcaagcaattttctttcctcagcctcctgaatagctgggattacaggcagtgtgccaacagcctggctaattttttgtatttttagtggagacagggtttcggcatgttggccaggtt
i chlSab2.chr6              I 38 C 0
s calJac3.chr22              45464299 187 +  49145316 caaggtttcactcttgtcatccaggctggagtgcagtggctccatctcaggtcacagcaacctctgcctgc-gggttaaagtgattttcctacctcagcctcctgaatagctgggattacaggca-tacaccaacagcctggctcattatttgtatttttagtagacctggggtttcgccatgttgccc-----
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102994123  52 + 122678785 ---------------------------GGACCGCAGAGGTTACAC------------------------------------------------------------AGTGGCTGC------------TATGTTAA----------AATCTTTTAT--------------CAGAATT-------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e nomLeu3.chr10             102760405   0 - 106955855 C

a score=14689.000000
s hg38.chr19_GL949751v2_alt    181013 18 +   1002683 ggtctctcaaactcctga
s ponAbe2.chr19              55991076 18 +  60714840 ggtctctcaaactcctga
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60047997 16 +  64156825 gg--tctcaaactcccgc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073492 16 +  59248254 gg--tctcaaactcccga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47175984 16 +  51301725 gg--tctcaaactcccaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46881343 16 +  50890351 gg--tctcaaactcctaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45464486  8 +  49145316 ----------actcctga
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102994175  9 + 122678785 ---------GGTTCTTAA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e nomLeu3.chr10             102760405  0 - 106955855 C
e panTro4.chr19              59113645 14 +  63644993 I

a score=179010.000000
s hg38.chr19_GL949751v2_alt    181031 107 +   1002683 cctcaagtgatccgtctcggactcccgaagtgctgggattacaggtgtgagccaccactcccagccCGTAGGGTGGTTTTGACAGTGACATGGGTCACGGTGA-TGGC
s ponAbe2.chr19              55991094 108 +  60714840 cctcaagtgatctgtctcgggctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccCGGAGGGTGGTTTTCACAGTGACATGGCTcacagtgactggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102760405 102 - 106955855 cctcacgtgatccgt------ctcccagagtgctgggattacaggtgtgagccaccacgcccagccCATAGGGTGGTTTTGACAGTGACATGGGTCACGGTGACTGGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60048013 108 +  64156825 cctcaagtgatccatctcacactcccaaagtgctgggattacaggcgtgagccaccacgcccagccCATAGGATAGTTTTGACAGTGATATGGGTCACAGTGACTGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073508 108 +  59248254 cctcaagtgatccatctcagactcccaaagtgctgggattacaggcgtgagccaccacgcccagccCATAGGATAGTTTTGACAGTGATATGGGTCACAGTGACTGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47176000 108 +  51301725 cctcaagtgatccatctcagactcccaaagtgctgggattacaggcatgagccaccacgcccagcccatagGATAGTTTTGACAGTGATACGGGTCACAGTGACTGGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46881359 108 +  50890351 cctcaagtgatccatctcagactcccaaagtgctgggattacaggcgtgagccaccacgcccagccCATAGGATAGTTTTGACAGTGATACGGGTCACAGTGACTGGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45464494  60 +  49145316 ----------------------cctcaAAGTGTTGGGATTACAAGCATG--------------------------GTTTTGACGATGGCCTGGGTCACAGTGACTGGT
i calJac3.chr22             C 0 I 27
s canFam3.chr1              102994184  33 + 122678785 ---------------------CTTC-----TGCTCGTATCACAG--------CTCCA----------------------TGATAATGGA-------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I
e panTro4.chr19              59113645  14 +  63644993 I

a score=165718.000000
s hg38.chr19_GL949751v2_alt    181138 69 +   1002683 GCT-GTACTACTTGTGCCTCACCGCCGCGGCATGGagctac-caagaggcggagccaggatttgaacccaa
s panTro4.chr19              59113659 69 +  63644993 GCT-GTACTACTTGTGCCTCACCACCGCGGCATGGagctac-caagaggtggagccaggatttgaacccaa
i panTro4.chr19             I 14 C 0
s ponAbe2.chr19              55991202 64 +  60714840 gct-gtactacttgtg-----ccaccgtgacgcggagctac-caagaggtggagccaggatttgaacccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102760507 69 - 106955855 GCT-GTACTACCTGTGCCTCACCACCACGACATGGAGCTAC-CAAGAGGTGGAACAAGGATTTGAAGCCAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60048121 70 +  64156825 GCTAATACTACCTGTGCCTCACCACCGTGACATGGagctac-gaagaggtggagccaggatttgaacccaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073616 70 +  59248254 GCTAATACTACCTGTGCCTCACCACCGTGACATGGagctac-gaagaggtggagccaggatttgaacccaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47176108 69 +  51301725 GCTAATACTACCTGTGTCTCACCACCGTGACATGGAGCTAC-GAAGAGGTGGAGCCAGAA-TTGAACCCAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46881467 70 +  50890351 GCTAATACTACCTGTGCCTCACCACCGTGACATGGGgctac-gaagaggtggagccaggatttgaacccaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45464581 66 +  49145316 ACTAATACTACC-GTGCCTCACCACCGCAA-ATGGAGC--C-taagaggacgagccaggatttgaacccaa
i calJac3.chr22             I 27 C 0
s canFam3.chr1              102994217 28 + 122678785 ------------------------------------GCTCCTCAAGAGGT-------GGGTTTGAATCCAA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3704779 907 + 145441459 I

a score=2257962.000000
s hg38.chr19_GL949751v2_alt    181207 532 +   1002683 gAAGCCTGAGGTCAGAAGGCGGAATCAGTGTTTCCTCCCACTCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATAGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCGGATGGGCACCTGAATCTTCCTCCACCTGCCCCT-CTGATGGTTGCCCTCACTAAGCCTGCTGTCCCTATCTCCTATGCAGCCCTCGGAGGTGAT--GGGTGTGAACTCACCC-AGAGGGTACAGATTCAC-CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCTTGC----CCCAATAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
s panTro4.chr19              59113728 532 +  63644993 gaagcctgaggtcagaAGGCTGAATCAGTGTTTCCTCCCACTCTTCCCAGGCAATGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATAGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCGGATGGGCACCTGAATCTTCCTCCACCTGCCCCT-CTGATGGTTGCCCTCACTAAGCCTGCTGTCCCTATCTCCTATGCAGCCCTCGGAGGTGAT--GGGTGTGAATTCACCC-AGAGGGTACAGATTCAC-CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCATGC----CCCAATAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55991266 533 +  60714840 gaagcctgaggtcagaaggctgagtccgtgtgtccttccactCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATAGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCTCGCGTGCTGATCCGCCAGCGCCACATCAGGTACCACCTCTGATGGGCACCTGAATCTCCCTCCACCTGCCTCT-CTGATGGTTGCCCTCACTAAGCCTGCTGTCCCCATCTCCTATGCAGCCCTCGGAGGTGAT--GGGTGTGAACTCACCC-AGAGGGTACAGATTCAC-CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCGTGC----CCCAATAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCACGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGAGGGGAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102760576 532 - 106955855 GAAGCCTGAGGTCAGAAGGCTGAATCAGTGTTTCCTCCCACTCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATAGAGGATTTCTTAGAGAGACGCCTACAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCTGATGGGCACCTGAATCTTCCTCCATCTGCCCCT-CTGATGGTTGCCCTCACTAAGCCTGCTGTCCCTATCTCCTATGCAGCCCTTGGAGGTGAT--GGGTGTGAACTCACCC-AGAGGGTACAGATTCAC-CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCCTGC----CCCAATAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60048191 530 +  64156825 gAAGCCGGAGGTCAGAAGGCTGAATCAGTGCTTCCTCCCACTGTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATCGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCATGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCTGATGGGCGCCCAAACCTTCCTCCGCCT-CCCCT-CTGGTGGCTGCCCTCACTAAGCCTGCTGT-CCTATCTCCTATGCAGCCCTCGGAAGTGAT--GGGTGTGAGCTCACCC-AGAGGGTACAGATTCAC-CCTTGCACACAGCTCACCAGGGAGTTGGGGCAGCCTCATGC----CCCACTAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55073686 529 +  59248254 gAAGCCGGAGGTCAGAAGGCTGAATCAGTGCTTCCTCCCACTGTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATTCTGGGCCTGAAGATCGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCATGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCTGATGGGCGCCCGAACCTTCCTCCGCCT-CCCCT-CTGGTGGCTGCCCTCACTAAGCCTGCTGT-CCTATCTCCTATGCAGCCCTCGGAAGTGAT--GGGTGTGAGCTCACCC-AGAGGGTACAGATTCA--CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCATGC----CCCACTAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47176177 530 +  51301725 GAAGCCTGAGGTCAGAAGGCTGAATCAGTGCTTCCTCCCACTCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATCGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCATGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCTGATGGGCGCCCGAAccttcctccacct-cccct-cTGGTGGCTGCCCTCACTAAGCCTGCTGT-CCTATCTCCTATGCAGCCCTCGGAAGTGAT--GGGTGTGAGCTCACCC-AGAGGGTACAGATTGAC-CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCATGC----CCCAATAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46881537 530 +  50890351 gaagcctgaggtcagaAGGCTGAATCAGTGCTTCCTCCCACTCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATCGAGGATTTCTTAGAGAGGCGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCATGCTCGCGTGCTGATCCGCCAGCGCCATATCAGGTACCACCTCTGATGGGCGCCCGAACCTTCCTCCGCCT-CCCCT-CCGGTGGGTGCCCTCACTAAGCCTGCTGT-CCTATCTCCTATGCAGCCCTCGGAAGTGAT--GGGTGTGAGCTCACCC-AGAGGGTACAGATTCAC-CCTTGCACACAGCTCACCAGGGAGCTGGGGCAGCCTCATGC----CCCAATAGCCCAGCGCAAGGGTCACTGCGGCTCTAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGTG---TCCCCAGTGGA-GGGAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45464647 529 +  49145316 gaagtctgaggtcagaa-gctgAATCCGGGCTTCCTTCTACTCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATTGAGGATTTCTTAGAGAGACGTCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCACGTGTACTGATCCGCCAGCGCCATATCAGGTATCACCTCTTGTGGGCGCCCAAAGCTTCCTCCACGCTGCTCT-CTGATGGTTGCCCTCACTAAGCCTGCTGTCCCTATCTCC--TGCAGCCCTTGGAGGCGAT--GGGTGTGAGCTCACCC-TGAGGGTACAGATTCAC-CCTTGCACACAGCTCACGCGGGAGCTGGGGCAGCCTCATGT----CCCAAAAGCCCAGCGCAAGGGTCACTGCGGCTCCAGCCGTACACCTTGTGAAGGCCTCTGCCAGGCATGTGGGCAGCTGGACAGGTAACAGCTCTTGGCC---TCCCCGGTGGA-GGGAGA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3705686 531 + 145441459 GAAGTCTGAGGTCGG---GCCTCATTGGCTGCTGCTCCCCCTG-TCACAGGCAATGCTCTCCTGCGGCGGCTTGTTCGCATTGGGGTGCTGGACGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATTGAGGATTTCTTGGAGAGGCGGCTGCAGACCCAGGTCTTTAAGCTGGGCCTGGCCAAATCTATTCACCATGCCCGTGTGCTCATCCGCCAACGTCACATTAGGTG-AGTTGCAGCTGGGCCTGTAAATCTTTATTTCCCTACTTGTGCCGTTGGTTTCGTTAGCTAAG-TTGCCAT-TCTATCTCCTGTGCAGCCTTTGGAGCTGAC--AGATGTGAGCTTACCCTTGAGGGTTCAGAATCGTGCCCTGCAAACAGCTTATGGGGGACTGGGGACAGCCTTGTTT----CCCCATAGCCCAGCGCAAGGGTCACTGCGGCTCAAGCCGTACACCTTGTGAAGGTGTCTGCCAGGCACTCAAGCAGCTGGACAGGTAACAGCTCTTGGTGCCACCCCCCCTGGA-GGGAGA
i mm10.chr7                 I 907 I 157
s canFam3.chr1              102994245 518 + 122678785 GATGTCTAAAGT----------GATCAGTGCTTCCTTCCCCTCCTATCAGGTAATGCCCTACTGCGCCGACTTGTACGCATCGGGGTGCTGGATGAGGGCAAAATGAAGTTGGATTACATTCTGGGCCTGAAGATCGAGGATTTCTTAGAGAGACGCCTGCAGACCCAGGTCTTTAAGCTGGGCTTGGCCAAGTCCATCCACCATGCCCGTGTGCTGATCCGCCAGCGCCATATCAGGTAACACATCTAGGGG---------TCTATCTTCTCCATCCTCC-TTGGTGGTTGCCCTCACTAAGCTTGCTGTCCTTATCCCCTATGCAGCCCTCGGAGGTGACAAAGGTGTGAACACACCT-TGAGGGTACAGATTGAC-ACCTGCAAAGTGCTCATGGGTTGCTGGGGAGAGCCTCATCCCCTGCCCCGTAGCCCAGCGCAAGGGTCACTGCGGCCTAAGCCGTACACCTTGCGAAGGCTTCTA-CAGGCATGCATGCAGCCAGACAGGTAACCGTTCCCGGTG---TGCCTGGTGAA-CAGAGA
i canFam3.chr1              C 0 C 0

a score=556289.000000
s hg38.chr19_GL949751v2_alt    181739 195 +   1002683 GAACCA----GCCTCACCTCGCTTGGGTG-----GTGGGTTCAGCTGTCTCCTGGCTCGCTTGTGAAGTTGATTCCAGACCCCGATCCATGACTGCGTTCTGGGTACTCAGTGTGCCCTTTCTGTAATGTGGCACCA---------TTGAGGGGGAGGAGCTGTACAGAAAGAGGGCAAGATGTTTGCGTTTAGAATCTTCGCCCCAGCCCTT
s panTro4.chr19              59114260 195 +  63644993 GAACCA----GCCTCACCTCGCTTGGGTG-----GTGGGTTCAGCTGTCTCCTGGCTCGCTTGTGAAGTTGATTCCAGACCCCGATCCATGACTGCGTTCTGGGTACTCAGTGTGCCCTTTCTGTAATGTGGCACCA---------TTGAGGGGGAGGAGCTGTACAGAAAGAGGGCAAGATGTTTGCGTTTAGAATCTTCGCCCCAGCCCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55991799 195 +  60714840 GAACCA----GCCTCACCTCGCTTGGGTG-----GTGGGTTCGGCTGTCTCCTGGCTTGCTTGTGAAGTCGATTCCAGACCCTGATCCATGACTGCGTTCTGGGTACTCAGTGTGCCATTTCTGTAACGTGGCACCA---------TTGAGGCGGAGGAGCTGTACAGAAAGAGCGCAAGATGTTTGCGTTTAGAATCTTCGCCCCAGCCCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102761108 195 - 106955855 GAACCA----GCCTCACCTCGCTTGGGTG-----GTGGGTTCAGCTGTCTCCTGGCTCTCTTGTGAAGTTGATTCCAGACCCTAATCCATGACTGCATTCTGGGTACTCAGTGTGCCCCTTCTGTAACGTGGCACCA---------TTGAGGGGGAGGAGCTGTACAGAAAGAGGGCAAGATGTTTGCGTTTAGAATCTTCGCCCCAGCCCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60048721 195 +  64156825 GAACCA----GCCTCTCCTCGCTTGGGTG-----GTGGGTTCAGCTGTCTCCTGACTCGTTTATGAAGTTGATTCCAGACCCTAATCCATGACTGCTTTCTGGGTACTCAGTGTGCCCTTCCTGTAACGTGGCACCA---------TTGACGGGGAGGAGCTGTACAGGAAGAGGGCAAGATGTTAGCGTTTAGAATCTCCGCCCCAGCCCTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55074215 195 +  59248254 GAACCA----GCCTCTCCTCGCTTGGGTG-----GTGGGTTCAGCTGTCTCCTGACTCGTTTATGAAGTTGATTCCAGACCCTAATCCATGACTGCTTTCTGGGTACTCAGTGTGCCCTTCCTGTAACGTGGCACCA---------TTGACGGGGAGGAGCTGTACAGGAAGAGGGCAAGATGTTAGCGTTTAGAATCTCCGCCCCAGCCCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47176707 194 +  51301725 GAACCA----GCCTCTCCTCGCTCGGGTG-----GTGGGTTCAGCTGTCTCCTGACTCGTTTATGAAGCTGATTCCAGACCCTAATCCATGACTGCTTTCTGGGTACTCAGTGTGCTCTT-CTGTAACGTGGCACCA---------TTGACGGGGAGGAGCTATACAGGAAGAGGGCAAGATGTTAGCATTTAGAATCTCCTCCCCAGCCCTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46882067 195 +  50890351 GAACCA----GCCTCTCCTCGCTTGGGTG-----GTGGTTTCAGCTGTCTCCTGACTCGTTTATGAAGTTGATTCCAGACCCTAATCCATGACTGCTTTCTGGGTACTCAGTGTGCCCTTTCTGTAACGTGGCACCA---------TTGACGGGGAGGAGCTACACAGGAAGAGGGCAAGATGTTAGCATTTAGAATCTCTGCCCCAGCCCTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45465176 191 +  49145316 GAACCA----GCCT--CCTCACTTGGGTG-----GTGGGTTCAGCTGTCTCCTGGCTCTCTTGTTAAGTCAGTTCCAGACCGTAAGCTGTGAGTGCGTTCTGGGTACTCGG-GTGCCCTTTCTGTAACATGGCACCA---------TTGAGAGGGAGGAGCTGTGCAGG-AGAGGCCACGACGTTTACATGTAGAATATCCACCTCAGCCCTT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102994763 168 + 122678785 -AGTCATTGGATCTCTACTGGTTTGGGTGGGTGTGTGGGTTCAGTTG------GGCCCACTTGTGGAATC-ATTCAGGAGCCTGGT-GGTTATCGTGTCCTG---ACACACTGT-CCGTGTTGGTGAGTTGACCACAGTCCATGGTCTGATGGTCAAGTGCTG----------GGGC---CTGTGGGAGTCTGG-------------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706217 157 + 145441459 I

a score=704981.000000
s hg38.chr19_GL949751v2_alt    181934 326 +   1002683 CACTAACCCTGTGAGCCGTAGGCAGA---GCCTTGTGTGT-CAATGCT----------TTCGTCGGA-GACG--TAGCCTCGGGTTGCTGTGTTATTGTGGGCATTGCTGCTGCACGT------GGTAATACAGCTCAGTGTCAGGTGTGGGGTTCACGATA--TTTCAGACTCGGAACTTGGGGGCTCTCACATGGCCATCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTTTCAGATT------TCTCCTATAAAATGGGGT---TGAGAAAGTCATC----TGAAGCATT--TTT--GGGGATTAAGGTGATACCCTAAAACCCCGG------AGGGCGCACGTAGGATCAGGTGCACCCTTCCTGCAGC
s panTro4.chr19              59114455 328 +  63644993 CACTAACCCTGTGAGCCGTAGGCAGA---GCCTTGTGTGT-CAATGCT----------TTCGTCGGA-GACGCGTAACCTCGGGTTGCTGTGTTATTGTGGGCATTGCTGCCGCACGT------GGTAATACAGCTCAGTGTCAGGCGTGGGGTTAACAATA--TTTCAGACTCGGAACTTGGGGGCTCTTACACGGCCATCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTATCGGATT------TCTCCTATAAAATGGGGT---TGAGAAAGTCATC----TGAAGCATT--TTT--GGGGATTAAGGTGATACCCTAAAACCCCGA------AGGGTGCCCGTAGGATCAGGTGCACCCTTCCTGCAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55991994 326 +  60714840 CACTAACCCTGTGAGCCATAGGCAGA---GCCTTGTGTGT-CAGTGCT----------TTCGTCGGA-GACG--TAGCCTCGGGTTGCCGTGTTATTGTGGGCATTGCTGCCGCACGT------GGTAATACAGCTCAGTGTCAGGTGTGGGGTTCAGGATA--TTTCAGACTCGGAACTTGGGGGCTCTTACACGGCCATCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTTTCGGATT------TCTCCTATAAAATGGGGT---TGAGAAACTCATC----TGAAGTATT--TTG--GGGGATTAAGGTGATACCCTAAAACCCCGA------AGGGTGCCCATAGGATCAGGTGCACCCTTCCCGCAGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102761303 326 - 106955855 CACGAACCCTGTGAGCCGTAGGCAGA---GCCTTGTGTGT-CAGTGCT----------TTCGTCGGA-GACG--TAGCCTCGGGTTGCTGCGTTATTGTGGGCATTGCTGCCGCGCGT------GGTAATACAGCTCAGTGTCAGGCGTGGGGTTCAGGATG--TTTCAGACTCGGAACTTGGGGGTTCTTACACGGCCACCTCATTTGCTTTGTAGTCTTAGGT------GGGAT-----------------------------GCTTTTGAATT------TCTCCTATAAAATGGGGT---TGAGAAACTCATC----TGAAGCATT--TTT--GGGGATTAAGGTGATACCCTAAAACCCCGA------AGGGTGCCCATAGGATCAGGTGCACCCTTCCCGCAGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60048916 315 +  64156825 CACTAAGCCTGTGAGCCGCAGGCAGA---GCCTCGTGTGT-CAGCG----------------------------TAGCCCCGGGTTGCTGTGCTGTTGTGGGCATTGCTGCCGCACGT------GGTAATGCAGCTCAGTGTCAGGCGTGGGGTTCAGGATG--TTTCAGACTCGGAACTT--GGGCTCTTATTCGGCCACCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTTTTGAGTT------TCTCCTAGAAAATGTGGT---TGAGAAACTCACC----TGAAGCGTT--TTT--GGGGGTTAAGGTGATACCCTCAAACCCTGGACTCACATGAGGCCCATAGGATCAGGAGCGCCCTTCCCACAGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55074410 315 +  59248254 CACTAAGCCTGTGAGCCGCAGGCAGA---GCCTCGTGTGT-CAGCG----------------------------TAGCCCCGGGTTGCTGTGCTGTTGTGGGCATTGCTGCCGCACGT------GGTAATGCAGCTCAGTGTCAGGCGTGGGGTTCAGGATG--TTTCAGACTCGGAACTT--GGGCTCTTATTCGGCCGCCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTTTTGAGTT------TCTCCTAGAAAATGTGGT---TGAGAAACTCACC----TGAAGCATT--TTT--GGGGGTTAAGGTGATACCCTCAAACCCTGGACTCACATGAGGCCCATAGGATCAGGAGCGCCCTTCCCACAGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47176901 315 +  51301725 CACTAAGCCTGTGAGCCGCAGGCAGA---GCGTCGTGTGT-CAGCG----------------------------TAGCCCCGGGTTGCTGTGCTGTTGTGGGCATTGCTGCCGCACGT------GGTAATGCAGCTCAGTGTCAGGCGTGGGGTTCAGGATG--CTTCAGACTCGGAACTT--GGGCTCTTCTTCGGCCACCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTTTTGAATT------TCTCCTAGAAAATGTGGT---TGAGAAACTCACC----TGAAGCATT--TTT--GGGGGTTAAGGTGATACCCTCAAACCCTGGACTCACATGAGGCCCATAGGATCAGGAGCGCCCTTCCCACAGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46882262 314 +  50890351 CACTAAGCCTGTGAGCCGCAGGCAGA---GCCTCGTGTGT-CAGTG----------------------------TATCCCCGCGTTGCCGTGCTTTTGTGGGCATTGCTGCTGCACCT------GGTAATGCAGCTCAGTGTCAGG-ATGGGGTTCAGGATG--TTTCAGACTCGGAACTT--GGGCTCTTATTCAGCCACCTCATTTGCTTTGTGGTCTTAGGT------GGGAT-----------------------------ACTTTTGAATT------TCTCCTAGAAAATGTGGT---TGAGAAACTCATC----TGAAGCATT--TTT--GGGGATTAAGGTGATACCCTCAAACCCTGGACTCACATGAGGCCCATAGGATCAGGAGCGCCCTTCCCACAGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45465367 307 +  49145316 CACTAACCCTGTGAGCCGTGGGCAGA---GCCTTCTGTGTGTGACGCC----------TTCACTGTG-GACA--TAGCCTCAGGTTGCTGTGTTACAGTGGGCATTGCTGCCGTGTGT------GGTCA---AGCTCAGTGCCAGGTGTGGGGTTGAG--TG--TTTCACACTTCGGACTT--------TTAAT--GCCACCTCATTTGCGTTGTGGTCTTATGT------GGGAT-----------------------------ACTTTTGAATT------TCTCCT---AAATGTGGT---TGAGA--------------AAGCATT--TTTGGGGGGGTGAAGGTGATGCCCTAAGACCCTGGACTCACATGAGGCCCACAGGATCAGGAGCGCCCTTCCGGCAGT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3706374 194 + 145441459 CACCAATCATGACAGCTATACA-------------------GAGTG----------------------------AAGTCTCAGATTTCTTTCTCACCA--------GCTTTCGTTTAT------GG---------------------GCAGAGAT----------------------------GTACTCTT--------GTCTGAGGTGGTTTGAGACC--ACAT------GGCAT-----------------------------------------------------TACAATGTGGA---CAGGAAGCAAATC-----AAAGCATTAGTAT--GGGCACTCTTGTTTTCCTTCCAAGTTACTGAGTC------------TGAGGTCAGG--------------AGT
i mm10.chr7                 I 157 C 0
s canFam3.chr1              102994931 383 + 122678785 --CTGGCTCAAGAAGACA-GGGCAGATGGGTCTTTTATCT-GGGTGCTCAGTTTGACCTTTGTCAGATTTTG--TAGACTGGAGTCTCAG----GTGAAGGACAGTAAGGCTGCTCCTTAGATAGATAGTAAAGCCCAGTGTCTGGCAC--ACTTCACTTTGAAAATCAGACCCTGGAATTACTGGCTGCCACT-GGCTCCCCTCCTTCCTTTGTGGTCTTGAGTTCCTCCTGAATGCATCCACAATGCAAACCAGAAGCTCCACACGTTTGAGTTCAGTGATATTCTAAAACTTgggatccctgggtggcgcagcggtttggcgcctg--cct--ttggcccagggcgtgatcctgaagacccgggatc----gaatcccac---atcggg--ctccctgcatggagc
i canFam3.chr1              C 0 I 159

a score=234579.000000
s hg38.chr19_GL949751v2_alt    182260 96 +   1002683 GCCTTGGTGTCT------------GCAGCCGTGGCGGCCTCACGGGGTGGGTGGAGAGGAAAGAGTGGTGCGGTAGCTGGGGTTAGCGTCCGTTTCTCCTCCAGTCCA
s panTro4.chr19              59114783 96 +  63644993 GCCTTGGTGTCT------------GCAGCCATGGCAGCCTCACGGGGTGGGTGGAGAGGAAAGAGTGGTGCCGTAGCTGGGGTTGGCGTCCGTTTCTCCTCCAGTCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55992320 96 +  60714840 GCCTTGGTGTCT------------GCGGCCATGGCAGCCTCACGGGGTGGGTGAAGAGGAAAGAGTGGTGGCTTAGCTGGGGTTAGCGTCCGCTTTTCCTCCAGTCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102761629 93 - 106955855 GCCTTGGTGTCT------------GCAGCCATGGCAGCCTCACAGCGTGGGTGAAGAGGAGAGAGTGGTGCCTTAGCTGGGGTTAGCGTCCGTTT---CTCCAGTCCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60049231 96 +  64156825 GCCTCCGTGTCT------------GTGGCCATGGCAGCCTCATGGGGTGGGTGAAGAGGAGAGAGTGGTGCCTGAGCTGGGGTTAGCATCCGTTTCTCCTCCAGTCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55074725 96 +  59248254 GCCTTGGTGTCT------------GTGGCCATGGCAGCCTCATGGGGTGGGTGAAGAGGAGAGAGTGGTGCCTGAGCTGGGGTTAGCATCCGTTTCTCCTCCAGTCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47177216 96 +  51301725 GCCTCGGTGTCT------------GTGGCCATGGCAGCCTCACGGGGTGGGTGAAGAGGAGAGAGTGGTGCCTGAGCTGGGGTTAGCATCCGTTTCTCCTCCAGTCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46882576 96 +  50890351 GCCTCGGTGTCT------------GTGGCCATGGCAGCCTCACGGGGTGGGTGAAGACGAGAGAGTGGTGCCTGAGCTGGGGTTAGCGTCTGTTTCTCCTCCAGTCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45465674 99 +  49145316 GCCTGGGTGTCTGCAACCCTAGCAGCAGCCGTGGCCACCTCACGGGCTGAGTGAAGAGGAGA----GGCACCTC-GCTGGGCTT-GCTTCATTCT---CCCCGGTCCA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3706568 59 + 145441459 GCCTGTGAGCCT------------GC----------------TTGAGTCAAAGGGCAGGACCAAATGGT-------------TCAGCCTCACTTT--------GTCCC
i mm10.chr7                 C 0 C 0
e canFam3.chr1              102995314 159 + 122678785 I

a score=1212966.000000
s hg38.chr19_GL949751v2_alt    182356 293 +   1002683 CCTCACCTTGTCG--CTTCTTCCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCTCTGCGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAATGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAGT-CCACCTGTC--CCTCCT-----GGGCTGCTG------GATTGTCTCGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------ATTGGTGTGTGGGGGTCT-CTC
s panTro4.chr19              59114879 293 +  63644993 CTTCACCTTGTCA--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAACATCCCATCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCTCTGCGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAATGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAGT-CCACCTGTC--CCTCCT-----GGGTTGCTG------GATTGTCTCGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------ATTGGTGTGTGGGGGTCT-CTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55992416 293 +  60714840 CTTCACTTTGTCG--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCTCTGCGCTCTCCCTATGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAACGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAGT-CCACCTGTC--CCTCCT-----GGGCTGCTG------GATTGTCTCGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------ATTGGTGTGTGGGGGTCT-CTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102761722 299 - 106955855 CTTCACTTTGTCA--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCTCTGCGCTCTCCCTATGGGGGTGGCCGCCCGGGCCGTGTGAAGAGGAAGAACGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAAC-CCACTTGTC--CCTCCT-----GGGCTGCTGGATTGTGATTGTCTTGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------ATTGGTGTGTGGGGGTCT-CTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60049327 293 +  64156825 CTTCACTTTGTCG--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAATATCCCGTCGTTCATTGTCCGCCTGGATTCCCAGAAGCACATTGACTTCTCCCTGCGCTCTCCCTATGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAACGCCAAGAAGGGCCAGGGTGGGGCCGGGGCTGGAGACGACGAGGAGGAGGATTAAGC-CCAGCTTTC--CCTCCT-----GGGCTGCTG------GATTGTCTAGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------ATTGGTGTGTGTGGGTGT-CTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55074821 293 +  59248254 CTTCACTTTGTCG--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAATATCCCGTCGTTCATTGTCCGCCTGGATTCCCAGAAGCACATTGACTTCTCCCTGCGCTCTCCCTATGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAACGCCAAGAAGGGCCAGGGTGGGGCCGGGGCTGGAGACGACGAGGAGGAGGATTAAGC-CCACCTTTC--CCTCCT-----GGGCTGCTG------GATTGTCTAGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------ACTGGTGTGTGTGGGTGT-CTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47177312 293 +  51301725 CTTCACTTTGTCG--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAATATCCCATCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCCCTGCGCTCTCCCTATGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAACGCCAAGAAGGGCCAGGGTGGGGCCGGGGCTGGAGACGACGAGGAGGAGGATTAAGC-CCACCTTTC--CCTCCT-----GGGCTGCTG------GATTGTCTAGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------Gttggtgtgtgtgggtgt-ctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46882672 293 +  50890351 CTTCACTTTGTTG--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAATATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCCCTGCGCTCTCCCTATGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAACGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAGC-CCACCTTTC--CCTCCT-----GGGCTGCTG------GATTGTGTAGTTTTCCTGCC---AAATAAACAGGATCAGCGCTT--TACA-------GTTGGTGTGTGTGGTTGT-CTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45465773 297 +  49145316 CTTAACC-CGTCC--CCTCTTCCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCCCTCCGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAATGCCAAGAAGGGTCAGGGCGGGGCTGGGGCTGGGGATGACGAGGAGGAGGATTAAGC-CCACCTGTCCGCCTCTG-----GGGCTCGTG------GATTGCCGAGTTTTCCTGCT---GAATAAACAGGATCAGCGCTTTATATA-------CTTGGTGTGTTTGTGTCTCCTC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3706627 286 + 145441459 CTTATTCTGTTCT--TCCTGTCCAGGGTCCGCAAGCAGGTGGTGAACATCCCATCCTTCATTGTTCGCCTGGACTCTCAGAAGCACATCGACTTCTCCCTCCGTTCTCCTTATGGCGGCGGCCGTCCAGGCCGAGTGAAGAGGAAGAATGCCAAGAAAGGCCAGGGCGGGGCTGGAGCTGGTGATGATGAGGAAGAGGATTAATTAATACTTGGC-------T-----GAACTGGAG------GATTGTCTAGTTTTCCAGCTGAAAAATAAAAAAGA------ATT--GATA-------CTTGGTTTATTGGTGTGC-CTC
i mm10.chr7                 C 0 I 5733
s canFam3.chr1              102995473 303 + 122678785 CCTCACC-TGCCATCCCCCCTCCAGGGTCCGAAAGCAGGTAGTGAACATCCCGTCCTTCATTGTCCGCCTGGACTCCCAGAAGCACATCGACTTCTCCCTCCGTTCTCCGTATGGGGGTGGCCGCCCAGGCCGCGTGAAGAGGAAGAATGCCAAGAAGGGCCAGGGTGGGGCTGGAGCCGGTGATGACGAAGAGGAGGACTGAAC-CCACCCTTC--CATCCCTTTCAGGGCCCGTG------GATTATCTAGTTTTCTAGGC---CAATAATAA--AACAGTGTTT--TGGAATCGTTTATTGGTTTATTGGTGTGT-CT-
i canFam3.chr1              I 159 C 0

a score=61115.000000
s hg38.chr19_GL949751v2_alt    182649 59 +   1002683 ATCCTTGACTCTTTCCCCTGCTCTAAACATGCAGCCTTCCCTGGGA--------------GGCTCAC----------TCACTT----
s panTro4.chr19              59115172 58 +  63644993 CTCTTTGACTCTTTCCCC-GCTCTAAACATGCAGCCTTCCCTGGGA--------------GGCTCAC----------TCACTT----
i panTro4.chr19             C 0 I 13
s ponAbe2.chr19              55992709 59 +  60714840 CTCCTAGACTCTTTCCCCTGCTGTAAACATGCAGCCTTCCCTGGGA--------------GGCTCAC----------TCACTT----
i ponAbe2.chr19             C 0 I 733
s nomLeu3.chr10             102762021 29 - 106955855 CTC---GGCTCACTCTCT-------------------TCCGGGTGA--------------TACTT----------------------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60049620 48 +  64156825 CTT---GACTC--TCCCCTGCTCTGAACATGCAGCCTTCCCTGGGA--------------GGCTCAG--------------------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55075114 48 +  59248254 CTT---GACTC--TCCCCTGCTCTGAACATGCAGCCTTCCCTGGGA--------------GGCTCAG--------------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47177605 48 +  51301725 CTT---GACTC--TCCCCTGCTCTGAACATGCAGCCTTCCCTGGGA--------------GGCTCAG--------------------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46882965 48 +  50890351 CTT---GCCTC--TCCCCTGCTCTGAACATGCAGCCTTCCCTGGGA--------------GGCTCAG--------------------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45466070 66 +  49145316 CTT---GACTCTTAACCCTGCTCTGACCTTGCCGCCTTTCCTAGGA--------------AGCTTGGGGCAGCTCACTCGCTT----
i calJac3.chr22             C 0 I 18
s canFam3.chr1              102995776 60 + 122678785 ---------------CCCTGTTCTGAACATACAGC--TCCCTGTGGTGGGAAAAAATGATGGCTGGG----------TCCTCCAACC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706913 5733 + 145441459 I

a score=33766.000000
s hg38.chr19_GL949751v2_alt    182708 13 +   1002683 GGGAGTGCCTACC-
s panTro4.chr19              59115243 13 +  63644993 GGGAGTGCCTACC-
i panTro4.chr19             I 13 C 0
s ponAbe2.chr19              55993501 13 +  60714840 GGGAGTGCCTACC-
i ponAbe2.chr19             I 733 C 0
s nomLeu3.chr10             102762050 13 - 106955855 GGGAGTGCCTACC-
i nomLeu3.chr10             C 0 M 276
s rheMac3.chr19              60049668 13 +  64156825 GAGCGTGCCTACC-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55075162 13 +  59248254 GAGCGTGCCTACC-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47177653 13 +  51301725 GAGCGTGCCTACC-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46883013 13 +  50890351 GAGCGTGCCTGCC-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45466154 13 +  49145316 GGGAATGCCTACC-
i calJac3.chr22             I 18 C 0
s canFam3.chr1              102995836 11 + 122678785 ---AGGACCCTCCC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706913 5733 + 145441459 I

a score=163226.000000
s hg38.chr19_GL949751v2_alt    182721 106 +   1002683 AGCTAGTGGTCCCTGGCCT-------------CTCAGTACTA---TTCTACAGTAGTGAAC-ACACATCTTTACCAGAAACTTCTGTCATCAGGGGAGAGACGAGTGGTATTTTTGGAAAAAC
s panTro4.chr19              59115256 106 +  63644993 AGCTAGTGGTCCCTGGCCT-------------CTCAGTACTA---TTCTACAGTAGTGAAC-ATACATCTTTACCAGAAACTTCTGTCATCAGGGGAGAGACGAATGGTATTTTTGGAAAAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55993514 106 +  60714840 ACCTAGTGGTCCCTGGCCT-------------CTCCGTACTG---TTCTGCAGTAGTGAAC-ACACATCTTTACCAGAAACTTCTGTCATCACGGGAGAGACGAATGGTATTTTTGGAAAAAC
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60049681 107 +  64156825 AGACAGTGGTCCCCGGCCT-------------CACAGTACTACTCTTCCACAGTGGTGAAC---ACATGTTTACCAGAAGCTTCTGTCATCAGGGGAGAGACCAATGGTCTTTTGGGAAAAAC
i rheMac3.chr19             C 0 I 321
s macFas5.chr19              55075175 107 +  59248254 AGACAGTGGTCCCCGGCCT-------------CGCAGTACTACTCTTCCACAGTGGTGAAC---ACATGTTTACCAGAAGCTTCTGTCATCAGGGGAGAGACCAATGGTCTTTTGGGAAAAAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47177666 107 +  51301725 AGACAGTGGTCCCCGGCCT-------------CTCAGTACTACTCTTCCACAGTACTGAAC---ACATGTTTACCAGAAGCTTCTGTCATCAGGGGAGAGACCAATGGTCTTTTGGGAAAAAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46883026 107 +  50890351 AGACAGTGGTCCCCAGCCT-------------CTCAGTACTACTCTTCCACAGTCGTGAAC---ACATGTTTACCAGAAGCTTCTGTCATCAGGGGAGAGACCAATGGTCTTTTGGGAAAAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45466167  65 +  49145316 AGATGGTGGGCCCTGGCCT---------------CAGTAATG-----------------------------------------CTGTCATCAGCAGAGAGAC--ACGGTATCTTGGGAAAAAC
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102995847 103 + 122678785 AGCAGGTGGTCCTTGTTCCTTGTTCCTTGGGGCATGGGTATAATCTGGTACACTCCTGAGCAACACAAACACACC---ACTTCCTTATTTCAGTGGGGATGCCAGC-----------------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706913 5733 + 145441459 I
e nomLeu3.chr10             102762063 276 - 106955855 M

a score=849.000000
s hg38.chr19_GL949751v2_alt    182827 6 +   1002683 TGTGTC
s panTro4.chr19              59115362 6 +  63644993 TGTGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55993620 6 +  60714840 TGAGTC
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55075282 4 +  59248254 --AGTC
i macFas5.chr19             C 0 I 337
s papAnu2.chr19              47177773 4 +  51301725 --AGTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46883133 4 +  50890351 --AGTC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              102995950 4 + 122678785 TGTG--
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706913 5733 + 145441459 I
e calJac3.chr22              45466232 0 +  49145316 C
e nomLeu3.chr10             102762063 276 - 106955855 M
e rheMac3.chr19              60049788 321 +  64156825 I

a score=74474.000000
s hg38.chr19_GL949751v2_alt    182833 31 +   1002683 AAAACCAGAAGGAAATTCCAAGTAAGCCGGT-
s panTro4.chr19              59115368 31 +  63644993 AAAACCAGAAGGAAATTCCAAGTAAGCCGGC-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55993626 31 +  60714840 AAAACCAGAAGGAAATTCCAAGTAAGCCGGC-
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60050109 31 +  64156825 aaaaCCAGATGGAAATTCCAAGTAAGCCGGC-
i rheMac3.chr19             I 321 C 0
s macFas5.chr19              55075623 31 +  59248254 aaaaCCAGATGGAAATTCCAAGTAAGCCGGC-
i macFas5.chr19             I 337 C 0
s papAnu2.chr19              47177777 31 +  51301725 AAAACCAGATGGAAATTCCAAGTAAGCCGGC-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46883137 31 +  50890351 AAAACCAGATGGAAATTCCAAGTAAGCCGGT-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45466232 29 +  49145316 --AGCCAGAAGGAAATTCCAAGTAAGCCAGC-
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102995954 25 + 122678785 ----CTAGGGGGAAGTTCT---CAAGCCACCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706913 5733 + 145441459 I
e nomLeu3.chr10             102762063 276 - 106955855 M

a score=1673992.000000
s hg38.chr19_GL949751v2_alt    182864 680 +   1002683 GTTTGCATATAGGGGTGGGAGGGAGCCGGTCATTGCTAGGCAGGGCAGGCGCCGAGTGGAGGTGGG--GGCCTTCCCTGCCTGCTGGCCCTGGGACCCTGACCCCGCCAGGCAAGAGACAGGT--GGGACGGGAGCTGAC--CAGAGGCTGA-CGGGTTGCTGGGGAAGG---TG-AACTGTTGGTGATTG----TTG---GGGAACACTTCACAGAATTTGCTTGCTAGTTTCAAAGC----TTGTGATGCGGTTGATGTTGGGCAAGTTCCCAGTTTTGTCTTCACATGTAGGGGAAGTGGGTTAGCGTAGGAGAAGGGGCGTTGAGGGAAGTCTGTTCCTCCTCTCCGCGTTCAGTGCTTCTGTGGACTCA--CGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCAGCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTTCTGAGGAAGTGAGAAACCTGAAATTGTGCAACCCCCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTATCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGGGCAGGGACAGTTCTGGAACACAGCTAAGTTACT--------GTAAACCACGTGGAGAAGT----CCATTGCGGCTTACTCAAGCTAGG---------------------------------------------------------------TGGTTGGCCCTT-CCTTCCCTCAGCGTTGCTACTTGGG--AAATGACGGTGGTCTTGT-----GTCCATGGGGCCAGCTGCTGCACCATCT
s panTro4.chr19              59115399 680 +  63644993 GTTTGCATATAGGGGTGGGAGGGAGCCAGTCATTGCTAGGCAGGGCAGGTGCTGAGTGGAGGTGGG--GGCCTTCCCTGCCTGCTGGCCCTGGGACCCTGACCCCACCGGGCAAGAGACAGGT--GGGACGGGAGCTGAC--CAGAGGCTGA-CAGGTTGCTGGGGAAGG---TG-AACTGTTGGTGATTG----TTGTTGGGGAACACTTCACAGAATTTGCTTGCTAGTTTCAAAGC----TTGTGATGCGGTTGATGTTGGGCAAGTTCCCAGTTTTGTCTTCACATGTAGGGGAAGTGGGTTAGCGTAGGAGAAGGGGCGTTGAGGGAAGTCTGTTCCTC---TCCGTGTTTGGTGCTTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCGTTTTCTCAGCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTTCTGAGGAAGTGAGAAACCTGAAATTGTGCAACCCCCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTATCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGGGCAGGGACAGTTCTGGAACACAGCTAAGTTACT--------GTGAACCACGCGGAGAATC----CCATTGCGGCTTACTCGAGCTAGG---------------------------------------------------------------TGGTTGGCCCTT-CCTTCCCTCAGCGTTGCTACTTGGG--AAATGATGGTGGTCTTGT-----GTCCATGGGGCCAGCTGCTGCACCATCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55993657 681 +  60714840 GTTTGCATATAGGGGTGGGAGGGAGCCAGTCGTTGCTAGGCAGGGCAAGCGCCGAGTGGAGGTGGG--GGCCTGCCCTGCCTGCTGGCCCTGGGACCCTGACCCCGCCGGGCAAGAGACAGGT--GGGACGGGAGCTGAC--CTGAGGCTGA-CGGGTTGCTGGGGAAGG---TG-AACTGTTAGTGATTG----TTGTTGGGGAGCACTTCACAGAATTTGCTTGCTAGTTTTAAAGC----TTGTGATGCGGTTGATGTTGGGCAAGTTCCCAGTTTTGTCTTCACATGTAGGGGAAGTAGGTTAGCGTAGGGGAAGGGTCGTTAAGGGAACTCTGTTCCTCCTCTCCGCGTTTGGTGCTTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCGGTCTTGTTGATCATC--TGTT---------GGGGAGGGGTTTGGTTTCTGAGGAAGTGAGAAGCCTGAAATTGTGCAACCCTCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTATCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGTGCAGGGACAGTTCTGGAACACAGCTAAGTTACT--------GTAAACCACGTGGAGAAGT----CCATTGCGGCTTACTTGAGCTAGG---------------------------------------------------------------TGGTTGGCCCTT-CCTTCCCTCAGGGTTGCTACTTGGG--AAATGATGGTGGTCTTGT-----GTCCATGGGGCCAGCTGCTGCACCGTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102762339 677 - 106955855 GTTTGCATATAGGGGTGGGAGGGAGCCAGTGATTGCTAGGCAGGGCAGGTGCCACGTGGAGGTGGG--GGCCTGCCCTGCCTGCTGGCCCTGGGACCCTGACCCCACCCAGCAAGAGACAGGT--GGGACGGGAGCTGAC--CTGAGTCTGA-CGGGTTGTTGGGGAAGGTGATG-AACTATTAGTGATTG----TTG---GGGAGCACTTCACAGAATTTGCTTGTTAGTTTCAAAGC----TTGTGATGTGGTTGATGTTGGGCAAGTTCCCAGTTTTGTCTTCACATGTAGGGGAAGTGGGTTAGCGTAGGGGAAGGGGCGTTGAGGGAA--CTGTTCGTCCTATCCACGGTTGGTGCTTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCGGCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTTCTGAGGAAGTGAGAAACCTGAAATTGTGCAACTCCCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTATCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGTGCAGGGACAGTTCTGGAACACAGCTGAGTTACT--------GTAAACCACGTGGAGAAGT----CCATTGCGGCCGACTCGAGCTAGG---------------------------------------------------------------TGGTTGGC-----CCTTCCCTCAGGGTTGCTACTTGGA--AAATGATGGTGGTCTTGT-----GTCCATGGGGCCAGCTGCTGCACCGTCT
i nomLeu3.chr10             M 276 C 0
s rheMac3.chr19              60050140 669 +  64156825 GTTTGCATGTAGGGGCGGGAGGGAGCCTGTTGATGCTGGGCAGGGGAGGCAGCAAGTGGAGGTGGG--GGCCCGTCCTGCCTG-TGGCCCTGGGACCCTGACCCCGCCCAGCAAGAGACAGGT--GGGGC-AGAGCTGGC--CTGAGACT-----GGTTGCTGGGGACGG---TG-AACTGTTAGTGACTG-TTTTTGTTGGGGAGCACTTCACCGAATTTGC----CGGTTTCAAAGCTTGTTTGTGTTGTGGTTGATGTTGGGCAAGTTCCCAGTTTTGTCTTCACACGTAGGGGAAGTGGGTTTGTGTAGGGGAAGGGGCATTGAGGGAA--CTCTTCCTCCTATCCGCATTTGGTGCCTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCGGCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTGCTGAGGAAGTGAGAACCTTGAACTTGGGCAAC-CCCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTGTCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGTGCGGGGATGGCTCTGGAACACAGCTGAGTTGCT--------GTAAACCACGT---GAAGT----CCACTGCCGCTTACTCGAGCTAGG---------------------------------------------------------------TGG-TGGC-----CCTTCCCTC--GGTTGCTACTTGGG--AAGTGA---TGGTCTTGTTGGATGTCCATGGGGCCAGCTGCTGCAGCGTCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55075654 672 +  59248254 GTTTGCATGTAGGGGCGGGAGGGAGCCTGTCGATGCTGGGCAGGGGAGGCAGCAAGTGGAGGTGGG--GGCCCGTCCTGCCTG-TGGCCCTGGGACCCTGACCCCGCCCAGCAAGAGACAGGT--GGGGC-AGAGCTGGC--CTGAGACT-----GGTTGCTGGGGACGG---TG-AACTGTTAGTGACTG-TTTTTGTTGGGGAGCACTTCACCGAATTTGC----CGGTTTCAAAGCTTGTTTGTGTTGTGGTTGATGTTGGGCAAGTTCCCAGTTTTGTCTTCACACGTAGGGGAAGTGGGTTTGTGTAGGGGAAGGGGCATTGAGGGAA--CTCTTCCTCCTATCTGCATTTGGTGCTTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCGGCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTGCTGAGGAAGTGAGAAACTTGAACTTGTGCAAC-CCCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTGTCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGTGCAGGGATGGCTCTGGAACACAGCTGAGTTGCT--------GTAAACCACGT---GAAGT----CCACTGCCGCTTACTCGAGCTAGG---------------------------------------------------------------TGG-TGGC-----CCTTCCCTC--GGTTGCTACTTGGG--AAGTGATGGTGGTCTTGTTGGACGTCCATGGGGCCAGCTGCTGCAGCGTCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47177808 675 +  51301725 GTTTGCATGTAGGGGCGGGAGGGAGCCTGTCGATGCCAGGCAGGGGAGGCAGCAAGTGGAGGTGGG--GGCCCGTCCTGCCTg-tggccctgggaccctgacCCTGCCCAGCAAGAGACAGGT--GGGGC-AGAGCTGGC--CTGAGACT-----GGTTGCTGGGGATGG---TG-AACTGTTAGTGACTG-TTTTTGTTGGGGAGCACTTCACTGAATTTGC----CAGTTTCAAAGCTTGTTTGTGTTGTGGTTGATGTTGGGCAAGTTTCCGGTTTTGTCTTCACATGTAGGGGAAGTGGGTTCATGTAGGGGAAGGGGCATTGAGGGAA--CTCTTCCTCCTATCCGCATTTGGTGCTTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCGGCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTGCTGAGGAAGTGAGAAACTTGAACTTGTGCAAC-CCCTCAGG--------------------CTGCAGGCTGTAGTTGATTGGGTCCTTGTCTG--------GAGGCCTTCAGGG------------TTTGAGGTCAGTGCAGGGATGGCTCTGGAACACAGCTGAGTTGCT--------GTAAACCACGTGGAGAAGT----CCACTGCCGCTTACTCGAGCTAGG---------------------------------------------------------------TGG-TGGC-----CCTTCCCTC--GGTTGCTACTTGGG--AAGTGATGGTGGTCTTGTTCGACGTCCATGGGGCCAGCTGCTGCAGCGTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46883168 643 +  50890351 GTTTGCTTATAGGGGTGGGAGGGAGCCTGTCGATGCTGGGCAGGGGAGGCAGCAAGTGGAGGTGGG--GGCCTGTCCTGCCTG-TGGCCCTGGGACCCTGACCCCGCCCAGCAGGAGACAGGT--GGGGC-AGAGCTGGC--CTGAGACT-----GGTTGCTGGGGAAGG---TG-AACTGTTAGTGACTC-TTTTTGTTGGGGAGCACTTCACCGAATTTGC----CAGTTTCAAAGCTTGTTTGTGATGTGGTTGATGTTGGGCAAGTTCCCGGTTTTGTCTTCACATGTAGGGGAAGTGGGTTCGTGTAGGGGAAGGGGCGTTGAGGGAA--CTCTTCCTCCTATCCGCATTTGGTGCTTCTGTGGACTCA--TGGTCAAGAGGTTGGCAGGCTTCCCTTTTCTCGCCCTTGTTGATCATCTGTGTT---------GGGAAGGGGTTTGGTTGCTGAGGAAGTGAGAAACTTGAACTTGTGCAAC-CCCTCAGG--------------------CTGCAGGCTGTAGCTGATTGGGTCCTTGTCTG--------GAGGCCTTCAGGG------------TTGGAGGTCAGTGCAGGGATGGCTCTGGAACACAGCTGAGTTGCT--------GTAGACCACGCGGAGAAAT----CCACTGCCGCTTACTCGAGCTAGG---------------------------------------------------------------TGG-TGGC-----CCTTCCCTC--GGTTGCTA----------------------------------CATGGGGCCAGCTGCTGCACCGTCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45466261 645 +  49145316 GTTTGCATATA-GGGTAGAAGGGAGTTGTTCATTTCCAGGCAGGGGATGCAGC--GTGCAGGT-GG--GGCCTGCCCTGGCTGTTGGCCCTTTGACCCTGACCCGG-------GGAGAGAAGT--GGGCTGGGAGCTGACCTCTGAGGCTGGCCTGGTTTTTGGGGAAGG---TG-GACTGTTGGTGGTGA--TTTCGCTGGGCAGCACTTCATAGAA-CTGCGGGCTCGTGTCGGAGC----TCGTGATGTGGGTGATGCTGGGCAAGTTCCCAGCTTTGTCTTCACTCCGAGGGGAAGTCGGTTGGTGT-GGGGGAGGGGTGTTGAGGGAA--CTCTTCCTCCTACCCACGCTTGGT--TTCTGTGGACTCA--TGGTCAGGAGGTT---AGGCTTCCGTTTTCTCTGCCTTGTTGATAAGCTGTGTC---------GGGATGGGG-TTGGTCTCTGAGGAAGTGAGAAACTTGAAACTGTGCAACCTTCT---------------------------CAGGCCCTAGTCGCTGGGGTTCTTGTCTA--------GAGGCCTTCAGTC------------TTTGAGGG---------------TCAGGGGCGCAGCTGAGTT-CT--------GTAAACCCTGCAGAGCAGTCAGCCCACTGCAGCTT----GAGCTAGG---------------------------------------------------------------TGGGCAGC-----CCTTCTCTCCGGGTTGCCACTTGGG--AAATGATGGTGGTCTTGTTGGACGTTCACGGGGCCAGCTGCTGCACCTTCT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102995979 713 + 122678785 ATTTGCATGGTGGTGAGCGAGGGA---------------GCAGGGAAAGTG-TGGGTGGAGGTTGGTTGGCATGGTCAACC---CAGCCCT-----TCTAGCCTTGGCAAAAAGAAGTCGGGTTCAGGTTGGCAACTGAGCGCTGAACCT---TGGGTTACAAGTGAGAA---TGAAACAGTT--TAATTGGGTTTTGCTGGGGAGCATTGGACAGGAAGGACAGGCCAGTTTCAAAGC----TTATTTCG--------------------------------------------------------GTGTGGGGAAAATGGC--TGAGGCACCCTGCTCCATCCCCCCTGCATCTGGAG--TTTGTGAACCCAGTGAGTCAGGAAGAAGACTGGCTTCCATTTTCTCTGTCTTGCTGAGAAGTTGGATCAGGCAGAGGAGGAAGGGGCTTGGTCTCAGGAAACACAAAGCCCTTGGCATTGAGCAAC-CCCTCATGGGCTGTGGCACTGCTGAGCTCTGAGGTCAGTGATGGCCTGGGACGCTGCCAGGCTGCCATGGAGCCTGCAGGAGGTCCCCAGTCCTTCCAGCTTAGTGCTGG----GTTCCCCCACGCCACAAGGTTACCATGTGGTAATAAATGATGTTAGCATTT----CCTTGGCATCTTACAGAAACTAAGATGAGCTGTGTACTGATGGGAATTCTGGAAGCAATCGACTCTCGTAAGACCCCAGGAAGTTCCTGG-TGGTCCTTGTCCTGCCTCCAGGCTG--GCTGGGGTCAAGTGGTA-----CCTGC----------TGTGAGCAGCTCCTGTGCCTTCC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3706913 5733 + 145441459 I

a score=631131.000000
s hg38.chr19_GL949751v2_alt    183544 225 +   1002683 GGGCTCACTGT----GGTCTCCTT---CCTTGGAGCGTGGGGTCTGGG------------CTAGTGGATGGCCGGGGCAGCGTACTCACTGGGCTC--CTGGGAGCTCC----CC----TGGGAGGAAGAGACTGCAGTTGTCTCTGGTCTGAGAG---GT---GGTGGCTCACCTGGGTGTAGCTCACAA-TTGC-GGAGCTCCA----CGGCAGCCTGGAGGGAGGGGAGAGTGGGAGTTGAGGTATGCGGTT---CTGGGGAGAAG
s panTro4.chr19              59116079 236 +  63644993 GGGCTCACTGT----GGTCTCCTT---CCTTGGAGCGTGGGGTCTGGGTCTTGT-CTGGGCTAGTGGATGGCCAGGGCAGCGTACTCACTGGGCTC--CTGGGAGCTCC----CC----TGGGAGGAAGAGACTGCAGTTGTCTCTGGTCTGAGAG---GT---GGTGGCTCACCTGGGTGTAGCTCACAA-TTGC-GGAGCTCCA----CGGCAGCCTGGAGGGAGGGGAGAGTGGGAGTTGAGGTATGCGGTT---CTGGGGAGAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994338 221 +  60714840 GGGCTCACTGT----GGT---CTT---CCTTGGAGTGTGGGGTCTGGGTCTTGT-CTGGACTAGTGGATGGCCAGGGCAGCCTACTCACTGGGCT------------------CC----TGGGAGGAAGAGACTGCAGTTGTCTCTGGTCTGAGAG---GT---GGCAGCTCACCTGGGTGTAGCTCGCAA-TTGT-GGAGCTCCA----CGGCAGCCTGGAGGGAGGGGAGAGTGGGAGTTGAGGTATGCGGTT---CTCGGGAGAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763016 235 - 106955855 GGGCTCACTGT----GGTCTCCTT---CCTTGGAGCATGGCGTCTGGGTCTTGT-CTGGGCTAGTGGATGGCCAGGGCAGCGTATTCACTGGGCTC--CTGGGGGCTCC----CC----TGGGAGGAAGAGA---CAGTTG--TCTGGTCT-AGAG---GT---GGTGGCTCACCTGGGTGTAGCTCACAATTTGT-GGAGTTCCAGATGCAGCAGCCTGGAGGGAGGGGAGAGTGGGAGTTGAGGTATGTGGTT---CTGGGGAGAAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60050809 234 +  64156825 GGGCTCACTGT----GGT---CTT---CCTTGGAGCGTGGGGTCTGGGTCTTGT-GTGGGCTCGTGGATGGCCAGGGCAGCGTAGTCACTGGGCTCCTCTGGGAGCTCC----CC----TGGGAGGAAGAGGGTGCAGTTG--TCTGGTCT--GAG---GT---GGTGGCCCACCTGGGGGTAGCTCCCCC------AGAGCTCCAGATGCAGCCGCCTGGAGGGAGAGAGGAGTGGGAGGTGAGGCGTGCGGTTCTGCTGGGGAGAAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076326 232 +  59248254 GGGCTCACTGT----GGT---CTT---GCTTGGACCGTGGGGTCTGGGTCTTGT-GTGGGCTCGTGGATGGCCAGGGCAGCGTAGTCACTGGGCTCCTCTGGGAGCTCC----CC----TGGGAGGAAGA--GTGCAGTTG--TCTGGTGT--GAG---GT---GGTGGCCCACCTGGGTGTAGCTCCCCC------AGAGCTCCAGATGCAGCCGCCTGGAGGGGGAGAGGAGTGGGAGGTGAGGCGTGCGGTTCTGCTGGGGAGAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178483 234 +  51301725 GGGCTCACTGT----GGT---CTT---GCTTGGAGCGTGGGGTCTGGGTCTTGT-GTGGGCTAGTGGATGGCCAGGGCAGCGTAGTCACTGGGCTCCTCTGGGAGCTCC----CC----TGGGAGGAAGAGAGTGCAGGTG--TCTGGTCT--GAG---GT---GGTGGCCCACCTGGGTGTAGCTCACCC------AGAGCTCCAGATGCAGCCgcctggagggagagaggagtaGGAGGTGAGGTATGCGGTTCTGCTGGGGAGAAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46883811 234 +  50890351 GGGCTCACTGT----GGT---CTT---CCTTGGAGCGTGGGGTCTGGGTCTTGT-GTGGGCTAGTGGATGGCCAGGGCAGCGTAGTCATTGGGCTCCTCTGGGAGCTCC----CC----TGGGAGGAAGAGAGTGCAGTTG--TCTGGTCT--GAG---GT---GGTGGCTCACCTGGGCGTAGCTCACCC------AGAGCTCCAGATGCAGCAGCCTGGAGGGAGAGAGGAGTGGGAGGTGAGGTATGCGGTTCTGCTGGGGAGAAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45466906 214 +  49145316 GGGGTCACCGT----GGT---CT------TTGGAGCGTGGGGTCTGGGTCTTGTCCTGGCCTAGTGGATGGCCAGAGCAGCGGATTCACTGGGCTC------------C----CT----TGGGAGGAAGAAAGTGCAGTTGCCTCTAGTCTGAGAT---CT---GGTGGCTCATCTGGGTGCAGCTCACATCTTATGGGAGTTCCAGATGCAGCAGCCTGGAGGGAGGG-------------GAGGGATGTGGTT---CTGTGGAGAAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3712646 232 + 145441459 GGGGTCATTGC----TCC---ATG---TCCTTGGGAACAGCCTCTGG--------ACGAGC-----AGCCGCCAGAGTAGCATATACACTGGGCTCCTCTGGGGCTTCCCCTGCC----TGGGAGAGAGGAGATGCAGCTGCCCCCTGTCT--GAGTGTCC---TGCTGCACAGCTGGGCATAGGTCACATCCTGG-GACTCCCCAGATTCGGCAGCCTGGAGTGGGAGAGG-GTGAGAGA-AAGGTATGTGATT-TGCTTGGG-GAAA
i mm10.chr7                 I 5733 C 0
s canFam3.chr1              102996692 243 + 122678785 GGGGTCCCTGTAGGGAGT---CTTAAGACCTCGAGTGTGGGGTCTGGGTCCT-T-CTGGGCTAGTAGAAGGCCAGAGCAGCATACACACTGGGCTCCTCTGGGGGCTCC----TCTGATTGGGAGGGAGAGGATGCACTTGTTTCCTGTCG--GAG---GGTCAGATGGTTCAGTTGGATATAGATCACATCTTGC-TGGTCCTCAGATATAGCCACCTGGAGCAGGGGGAGAGGA------AAGGCACGTGG-----CTGAGAAGAGG
i canFam3.chr1              C 0 I 3199

a score=37203.000000
s hg38.chr19_GL949751v2_alt    183769 15 +   1002683 CCTACGGGCTTGGAA
s panTro4.chr19              59116315 15 +  63644993 CCTACGGGCTTGGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994559 15 +  60714840 CCTACGGGCTTGGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763251 15 - 106955855 CCTATGGGCCTGGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051043 14 +  64156825 CCTGCAGGCTTGGG-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076558 14 +  59248254 CCCACAGGCTGGGG-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178717 15 +  51301725 CCTACAGGCTTGGGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884045 15 +  50890351 CCTACAGGCTTGGGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467120 15 +  49145316 CCTACCGGCTTGGGA
i calJac3.chr22             C 0 I 203
s mm10.chr7                   3712878 15 + 145441459 CCTGCAGGTCTGTGG
i mm10.chr7                 C 0 C 0
e canFam3.chr1              102996935 3199 + 122678785 I

a score=20962.000000
s hg38.chr19_GL949751v2_alt    183784 8 +   1002683 AGGAAAAG
s panTro4.chr19              59116330 8 +  63644993 AGGAAAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994574 8 +  60714840 AGGAAAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763266 8 - 106955855 AGGAAAAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051057 8 +  64156825 AGGAAACG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076572 8 +  59248254 AGGAAACG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178732 8 +  51301725 AGGAAACG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884060 8 +  50890351 AGGAAACG
i chlSab2.chr6              C 0 C 0
s mm10.chr7                   3712893 8 + 145441459 AGGACAGG
i mm10.chr7                 C 0 I 3546
e canFam3.chr1              102996935 3199 + 122678785 I
e calJac3.chr22              45467135 203 +  49145316 I

a score=120798.000000
s hg38.chr19_GL949751v2_alt    183792  65 +   1002683 GG------TCTTCAGGGCTCTGTCTACAGAGGCAGCGAGCGGGGCAACAGAG---GGAGACTCCATCTCAAG--------------------------------------------------AA
s panTro4.chr19              59116338  63 +  63644993 GG------TCTTCAGGGCTCTGT--ACAGAGGCAGCGAGCGGGGCAACAGAG---GGAGACTCCATCTCAAG--------------------------------------------------AA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994582  71 +  60714840 GGTCTTCATCTTCAGGGCTCTGTCTACAGAGGCAGCGAGCGGGGCAACGGAG---GGAGACTCCATCTCAAA--------------------------------------------------AA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763274 120 - 106955855 GGTCTTCATC-TCAGGGCTCTGTCTACAGAGGCAGCGAACGGGGCAACAGAG---GGAGACTCCAGCTCAGGGCTCTGTCTACAGAGGTGGCGAGCGGGGCAACAGAGAGAGACTCCAGCTCAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051065  73 +  64156825 GGTCTTCATCTTCAGGGCTCTGTGAACAGAGGCAGCGAGT-GGGCAACAGAGGGAGGAGACTCCGTCTCGAA--------------------------------------------------AA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076580  73 +  59248254 GGTCTTCATCTGCAGGGCTCTGTGAACAGAGGCAGCGAGT-GGGCAACAGAGGGAGGAGACTCCGTCTCGAA--------------------------------------------------AA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178740  74 +  51301725 GGTCTTCATCTTCAGGGCTCTGCGTACAGAGGCAGCGAGTGGGGCAACAGAGggaggagactccatctcgaa--------------------------------------------------aa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884068  74 +  50890351 CGTCTTCATCTTCAGGGCTTTGCCTACAGAGGCAGCGAGTGGGGCAACAGAGGGAGGAGACTCCATCTCGAA--------------------------------------------------AA
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3712901 3546 + 145441459 I
e canFam3.chr1              102996935 3199 + 122678785 I
e calJac3.chr22              45467135 203 +  49145316 I

a score=304076.000000
s hg38.chr19_GL949751v2_alt    183857 115 +   1002683 tttgtagagatggagtctcaatgtgttgccccggctgatctaaaaccct----tggcctcaagcaatccactc------gcctcccaaagcgctaggatgacaggtgtgagccacagtgcctggc
s panTro4.chr19              59116401 115 +  63644993 tttgtagagatggagtctcaatgtgttgccccggctgatctaaaaccct----tggcctcacgcaatccaccc------gcctcccaaagcactaggatgacaggtgtgggccacagtgcctggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994653 115 +  60714840 tttgtagagatggggtctcaatgtgttgccccggctgatctaaaactct----tggcctcaagcaatccactc------gcctcccaaagcgctaggatgacaggtgcgagccacagtgcctggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763394 115 - 106955855 tttgtagagatggggtctcactgtgttgccccggctgatctaaaactct----tggcctcaagcaatccaccc------gcctcccaaagcgctaggatgacaggtgtgagccacagtgcctggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051138 114 +  64156825 tttgtagagacga-gtctcactgtgttgccctggctgatctcaaactct----tggcctcaagcaatccaccc------acctcccaaagtgctaggatgacaggtgtgagccacagtgcccggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076653 114 +  59248254 tttgtagagacga-gtctcactgtgttgccctggctgatctcaaactct----tggcctcaagcaatccaccc------acctcccaaagtgctaggatgacaggtgtgagccacagtgcccggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178814 114 +  51301725 tttgtagagacgg-gtctcactatgttgccctggctgatctcaaactct----tggcctcaagcaatccaccc------acctcccaaagtgctaggatgacaggtgtgagccacaatgcccggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884142 118 +  50890351 tttgtagagacgg-gtctcaccatgttgccctggctgatctcaagcaatccacccacctcaagcaatccaccc------acctcccaaagtgctaggatgacaggtgtgagccgcagtgcccggt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467338 119 +  49145316 ttagtagagacggggtttcaccatgttgaccaggatggtctcgatctct----tgacctc--gtgatccacctgcctcggcctcccaaagtgctgggattataggcatgagccaccgtgcccggc
i calJac3.chr22             I 203 C 0
e mm10.chr7                   3712901 3546 + 145441459 I
e canFam3.chr1              102996935 3199 + 122678785 I

a score=4500.000000
s hg38.chr19_GL949751v2_alt    183972 1 +   1002683 c
s panTro4.chr19              59116516 1 +  63644993 c
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994768 1 +  60714840 c
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763509 1 - 106955855 c
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051252 1 +  64156825 c
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076767 1 +  59248254 c
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178928 1 +  51301725 c
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884260 1 +  50890351 c
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467457 1 +  49145316 c
i calJac3.chr22             C 0 I 54
s canFam3.chr1              103000134 1 + 122678785 C
i canFam3.chr1              I 3199 C 0
e mm10.chr7                   3712901 3546 + 145441459 I

a score=46133.000000
s hg38.chr19_GL949751v2_alt    183973 20 +   1002683 TGCGTGGGTCTGTTTAATCT
s panTro4.chr19              59116517 20 +  63644993 TGCGTGGGTCTGTTTAATCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994769 12 +  60714840 TGCGTGGGTCTG--------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763510 20 - 106955855 TGCATGGGTCTGTTTAATCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051253 20 +  64156825 TGCGTGGGTCTGTTTAATCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076768 20 +  59248254 TGCGTGGGTCTGTTTAATCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178929 20 +  51301725 tGCGTGGGTCTGTTTAATCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884261 20 +  50890351 TGCTTGGGTCTGTTTAATCT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103000135 20 + 122678785 TGAGTGGATGTCCTTCATCT
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3712901 3546 + 145441459 I
e calJac3.chr22              45467458 54 +  49145316 I

a score=11340.000000
s hg38.chr19_GL949751v2_alt    183993 6 +   1002683 CCGGGC
s panTro4.chr19              59116537 6 +  63644993 CCGGGC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102763530 6 - 106955855 CCGGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051273 6 +  64156825 GCGGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076788 6 +  59248254 GCGGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47178949 6 +  51301725 CCGGGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884281 6 +  50890351 CTGGGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467512 6 +  49145316 CCTGGC
i calJac3.chr22             I 54 C 0
s canFam3.chr1              103000155 6 + 122678785 CCATGA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3712901 3546 + 145441459 I
e ponAbe2.chr19              55994781 0 +  60714840 C

a score=108917.000000
s hg38.chr19_GL949751v2_alt    183999 38 +   1002683 CT-CTTGCTCTCCCTTTCTTGG-TGAT-----CTCCTTGGACCAC
s panTro4.chr19              59116543 38 +  63644993 CT-CTTGCTCTCCCTTTCTTGG-TGAT-----CTCCTTGGACCAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994781 35 +  60714840 ----TTGCTCTCCCTTTCTTGG-TGAT-----CTCCTTGGATCAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102763536 38 - 106955855 CT-CTTGCTCTCCCTTTCTTGG-TGAT-----TTCCTTGGACCAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051279 38 +  64156825 CT-CTTGCTCCCCCTTTCTTGG-TGAT-----CTCCTTGGACCAC
i rheMac3.chr19             C 0 I 43
s macFas5.chr19              55076794 38 +  59248254 CT-CTTGCTCCCCCTTTCTTGG-TGAT-----CTCCTTGGACCAC
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47178955 38 +  51301725 CT-CTTGCTCCCCCTTTCTTGG-TGAT-----CTCCTTGGACCAC
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46884287 38 +  50890351 CT-CTTGCTCCCCCTTCCTTGG-TGAT-----CTCCTTGGACCAC
i chlSab2.chr6              C 0 I 46
s calJac3.chr22              45467518 39 +  49145316 CTGCTGGGTCTCCCTTTCCTGG-TGAG-----CTCCTTCGACCAC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3716447 38 + 145441459 CT-CCTGTTCTCATCTTCTT-G-TGATCAATCCTGCTTAGG----
i mm10.chr7                 I 3546 C 0
s canFam3.chr1              103000161 39 + 122678785 CC-CTCACCGGCCATTTTTCAGCCCCT-----GTCCCTAGAACAT
i canFam3.chr1              C 0 C 0

a score=24858.000000
s hg38.chr19_GL949751v2_alt    184037 23 +   1002683 ATCCCTGTAT-CATTCT-----------------CTCTCTC-
s panTro4.chr19              59116581 23 +  63644993 TTCCCCGTAT-CATTCT-----------------CTCCCTC-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994816 23 +  60714840 TGCCCCGTAT-CATTCT-----------------CTCTCTC-
i ponAbe2.chr19             C 0 I 19
s nomLeu3.chr10             102763574 23 - 106955855 TTCCCTGTAT-CATTCA-----------------CTCCCTC-
i nomLeu3.chr10             C 0 I 19
s macFas5.chr19              55076833 23 +  59248254 GCCCCCATCT-CATTTT-----------------CTCCCTC-
i macFas5.chr19             I 1 I 19
s papAnu2.chr19              47178994 22 +  51301725 GCCCCCATC--CATTTT-----------------CTCCCTC-
i papAnu2.chr19             I 1 I 19
s calJac3.chr22              45467557 23 +  49145316 TGCCCCATCT-CATTCC-----------------CTCCCTC-
i calJac3.chr22             C 0 I 19
s mm10.chr7                   3716485 41 + 145441459 ATTCCTGTATCCATCCTAGCCATAAGCTCCCCAGCCCTCTC-
i mm10.chr7                 C 0 C 0
s canFam3.chr1              103000200 24 + 122678785 GGCCCCATCT-CAGCCT-----------------GTGCTCCT
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               46884325 46 +  50890351 I
e rheMac3.chr19              60051317 43 +  64156825 I

a score=267977.000000
s hg38.chr19_GL949751v2_alt    184060  95 +   1002683 GACCCT-------GAGCCC-----A--------GGGT----------CCAGAG----CAGAGAACGGGATGGGGTCTGGGTA---GGGGCCCCTCACTTGCAACCAGGATGTTGGGTGGGGGCGACGGGGGA
s panTro4.chr19              59116604  95 +  63644993 GACCCT-------GAGCCC-----G--------GGGT----------CCTGAG----CAGAGAACGGGATGGGGGCTGGGTA---GGGGCCCCTCACTTGCAACCAGGATGTTGGGTGGGGGCGACAGGGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994858  95 +  60714840 GACCCT-------GAGCTC-----A--------GGGT----------CCTGAG----CAAAGAACGGGACGGGGGCTGGGTA---GGGGCCCCTCACTTGGAACCAGGATGTTGGGTGGGGGCGACAGGGGG
i ponAbe2.chr19             I 19 C 0
s nomLeu3.chr10             102763616  95 - 106955855 GGCCCT-------GAGCCC-----A--------GGGT----------CCTGAG----CAGAGAACGGGATGAGGGCTGGGTA---GGGGCCCCTCACTTGCAACCAGGATGTTGGATGGGGGCGACGGGGGG
i nomLeu3.chr10             I 19 I 112
s rheMac3.chr19              60051360  92 +  64156825 GACCCT-------GAGCCC-----A--------GGGT-----------CTGAG----CAGAGAGCGGGACGGGGGCTAGGCA---GGGGCCCCTCACCTGCAACCAGCATATTGGGTGGGGGTGACGGGG--
i rheMac3.chr19             I 43 C 0
s macFas5.chr19              55076875  92 +  59248254 GACCCT-------GAGCCC-----A--------GGGT-----------CTGAG----CAGAGAGCGGGACGGGGGCTAGGCA---GGGGCCCCTCACCTGCAACCAGCATATTGGGTGGGGGTGACGGGG--
i macFas5.chr19             I 19 C 0
s papAnu2.chr19              47179035  92 +  51301725 GACCCT-------GAGCCC-----A--------GGGT-----------CTGAG----CAGAGAGTGGGACGGGGGCTAGGCA---GGGGCCCCTCACCTGCAACCAGCATATTGGGTGGGGATGATGGGG--
i papAnu2.chr19             I 19 C 0
s chlSab2.chr6               46884371  92 +  50890351 GACCCT-------GAGCCC-----A--------GGGT-----------CTGAG----CAGAGAGCGGGACGGGGGCTGGGCA---GGGGCCCCTCACCTGCAACCAGCATATTGGGTGGGGGTGTTGGGG--
i chlSab2.chr6              I 46 C 0
s calJac3.chr22              45467599  94 +  49145316 GACCCT-------GAACCC-----A--------GGGT----------CCTGAG----CAGATAACAAGATGGGGGCTAGGCA---GGGGCTTCTCATCTGCAACCAGGATGTTGGGTGGGGGCCGCAGGGG-
i calJac3.chr22             I 19 C 0
s mm10.chr7                   3716526 100 + 145441459 CCCCCT-------TATCCCCCATGA--------GAGC-----------CTGAG----CAGAGGCTAGGTCCCTGACTGAGTCTGTTGAGTTCCTCACCTGTGATCAGGATGTCCA--GGGGCTCACTGGAGG
i mm10.chr7                 C 0 C 0
s canFam3.chr1              103000224 119 + 122678785 GACCCTCTCCCCGGACCCC-----ATCACCCAGGGGTGACAGTGGCCCCTGAGCCTTCAGCAGACAGGACATGGGGCAG------GGGGCTCCTCACCTGTGATCAGGATGTCCAGAGGGGCACTGGGTG--
i canFam3.chr1              C 0 C 0

a score=224229.000000
s hg38.chr19_GL949751v2_alt    184155 64 +   1002683 CCGACCTTGGGCAGGAGGCATTGTGTCCACCGCAGCATCTGTGCTGGCCCCCAGGGGGGTGGCT
s panTro4.chr19              59116699 64 +  63644993 CCGACCTTGGGCAGGAGGCATTGTGTCCACCGCAGCATCTGTGCTGGCCCCCAGGGGGGTGGCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55994953 64 +  60714840 CCAACCTTGGGCAGGAGGCATTGTGTCCACCGCAGCATCTGTGCTGTCCCCCATGGGGGTGGCT
i ponAbe2.chr19             C 0 I 114
s nomLeu3.chr10             102763823 64 - 106955855 CCAACCTTGGGCAGGAGGCACTGTGTCCACCGCAGCATCTGTGCTGGCCCCCATGGGGGTGGCT
i nomLeu3.chr10             I 112 C 0
s rheMac3.chr19              60051452 64 +  64156825 TCAGCCTCCGGCAGGAGGCATCGTGTCCTCCGCAGCATCCGTGCTGGCCCCCATGTGGGTGGCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55076967 64 +  59248254 TCAGCCTCCGGCAGGAGGCATCGTGTCCTCCGCAGCATCCGTGCTGGCCCCCATGTGGGTGGCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47179127 64 +  51301725 CCAACCTCGGGCAGGAGGCATCGTGTCCTCCGCAGCATCCGTGCTGGCCCCCATGGGGGTGGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884463 64 +  50890351 CCAACCTCTGGCAGGAGGCATCGTGTCCACCGCAGCATCCCTGCTGGTCCCCATGGGGGTGGCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467693 59 +  49145316 CCTACCTTGGGCAGGA---AATGTGTCCGCCTCAGCATCTGTGCTGGCCCCC--GGGTGTGGCT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3716626 64 + 145441459 CTGACCACTCAGAGGAGAGGTTGTGTGCACCATAGCATCTGTATTGGCCTCCAGTGGAGCTACT
i mm10.chr7                 C 0 C 0
s canFam3.chr1              103000343 64 + 122678785 CTGACCACGTGGAGGAGAGATTGTGTCCACTGTAGCACCTGTACCGGCCCCCGTGGGTGCGGCT
i canFam3.chr1              C 0 C 0

a score=571175.000000
s hg38.chr19_GL949751v2_alt    184219 211 +   1002683 CGCATGGC-CCAGGGGGACGT------CCAGGAGGTGCTGCCCA-TCTAGGCGCTGGCGGGCTG---------GGAGCCCCTTGTCC-TGGTCAATGCAGAGCTGTCAAAACCGGCCTCTGAGTGATGCT-GAGGGGTCAGGCTGTCTCCAGAGAGCACCGGCGATCCCGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAC-GCCCCTGAGATGAGGCGACTGGTA---
s panTro4.chr19              59116763 211 +  63644993 CACATGGC-CCAGGGGGACGT------CCAGGAGGTGCTGCCCA-TCTAGGCGCTGGCGGGCTG---------GGAGCCCCTTGTCC-TGGTCAATGCAGAGCTGTCAAAACCGGCCTCTGAGTGATGCT-GAGGGGTCAGGCTGTCTGCAGAGAGCACCGGCGATCCCGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAC-GCCCCTGAGACGAGGCGACTGGTA---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55995131 211 +  60714840 CACAGGGC-CCAGGGGGACGT------CCGAGAGGTGCTGCCCA-TCTAGGCGCTGGGGGGTTG---------GGAGCCCCTCGTCC-TGGTCAATGCAGAGCTGTCAAAACTGGCCTCTGAGTGACGCT-GAGGGCCCAGGCCGTCTCCGGAAAGCACCAGTGATCCCGGCTGTGCTGAGAGGGGGGACTGAGGGCTGTCTGGAC-GCCCCTGAGATGAGGCAACTGGTA---
i ponAbe2.chr19             I 114 C 0
s nomLeu3.chr10             102763887 212 - 106955855 CACAGGGC-CCAGGGGGACTT------CCGGGAGGTGCCGCCCATTCTAGGTGCTGGGAGATTG---------GGAGCCCCTTGTCC-TGGTCAATGCAGAGCTGTCAAAACCAGCCTCTGAGTTACGCT-GAGGGCTTAGGCCGTCTCCAGAGAGCACCAGCGATCCTGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAT-GCCCCTGCGATGGGGCGGCTGGTA---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051516 187 +  64156825 CACAGGGC-CCAGGAGGAAGT------CAGGGAGG-----------------------GGGTTG---------GGAACCCCTTGTCC-TGGTCAATGCAGAGCTGTCAAAACTGGC--CTGAGTGACACT-GGGCGGTCAGGCCATCTCCAGAGAGCACCAGCGATCCCGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAC-GCCCCTGAGATAAGGCGACTGGTA---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55077031 187 +  59248254 CACAGGGC-CCAGGAGGAAGT------CAGGGAGG-----------------------GGGTTG---------GGAACCCCTTGTCC-TGGTCAATGCAGAGCTGTCAAAACTGGC--CTGAGTGACACT-GGGCGGTCAGGCCATCTCCAGAGAGCACCAGCGATCCCGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAC-GCCCCTGAGATAAGGCGACTGGTA---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47179191 184 +  51301725 CACAGGGC-CCAGGAGGAAGT------CCG---GG-----------------------GGGTTG---------GGAGCCCCTTGTCC-TGGTCAATGCAGAGCTGTCAAAACTGGC--CTGAGTGACACT-GGGCGGTCAGGCCATCTCCAGAGAGCACCAGCGATCCCGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAC-GCCCCGGAGATAAGGCGACTGGTA---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884527 188 +  50890351 CACAGGGCACCAGGAGGAAGT------CAGGGAGG-----------------------GGGTTG---------GGAGCCCCTTGTCC-CGGTCAATGCAGAGCTGTCAAAACCGGC--CTGAGTGACACT-GGGTGGTCAGGCCATCTCCAGAGAGCACCAGCGATCCCGGCTGTGCTGAGAGGGAGGGCTGAGGGCTGCCTGGAC-GCCCCTGAGATAAGGCGACTGGTA---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467752 208 +  49145316 CACAGGGC-CCAGGAAGAAGT------CGGGTATGTGCTGCCCA-CATAGGCACTGGGGGGTTG---------GGAGCTCCTTGTCC-TGATCAATGCAGAGCTGTCAGATCTGGC--CTCAATGATGCTGGGGGGGTCAGGCTGTCTCCAGTGAGCTCCAGCGAGCCCAGCTGTGCT--GAGGGAGGGCTGTGGGCTGCCTGTGC-GCCCCTGAGAGGAGAGGATTGGTA---
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3716690 221 + 145441459 CACATAGC-CCAGTGTGAAGTTGGCCACAGAGAAGCCAGTGTCAGTCTGCTGGCTAGAGTGCTGCATGATGTCAGCTCCCCCCACCT-TGTGCAGAGCAAATCTGTCATAGTTGATGTCAGAGAAACACT-GCAGGGTGAGGGTCATTCCAGGGTCCA-----GGATATGGCCTTGGTGAGTCAGCAGA--GAGGGCTTCTTGGACAGCCCTAGAGGGAAGGTGACAGCTA---
i mm10.chr7                 C 0 T 4822
s canFam3.chr1              103000407 208 + 122678785 CACAGGGT-CCAGGGGGAAGT------CGGGGCTGGGTTGACCA-TCCAGATGCTGGGCAGGTC---------TGAGCTCCTCATCCTTGGTCAGAGCGAATCTATCAAAGCCAGCTTCTGAGCGACACT-GCAGGGTCAGGTTTTCTCCAGAATGAACCAGTGAGCCCGGCTGGGCCATGAG-------TGAAGGCTCCCTGTAG-GCACCTGCATGGAAGGGCACAGTGACA
i canFam3.chr1              C 0 C 0

a score=381315.000000
s hg38.chr19_GL949751v2_alt    184430 153 +   1002683 TTTAGGGGATGCGTACTCTC-TGGGGCCCGCTGGGGCCTGCAGGGAGAGCTCTCACCGGTCTCAACTCCATGCCTTCTGCCTTGTGCTTCTGGCCCAAG-AGGTCGGGGTCACTGACCACCCCGTGTC-CACCTAAGGCTTCCCTGGACACACAGC
s panTro4.chr19              59116974 153 +  63644993 TTTAGGGGATGCGTACTCTC-TGGGGCCCGCTGGGGCCTGCAGGGAGAGCTCTCACCGGTCTCAACTCCATGCCTTCTGCCTTGTGCTTCTGGCCCAAG-AGGTCGGGGTCACTGACCACCCCGTGTC-CACCTAAGGCTTCCCTGGACACACAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55995342 140 +  60714840 TTTAGGGAATGCGCACTCT-----------CTGGGGCCTGCAGGGAGAGCTCG---CGGTCTCAACTCCATGCCTTCTGCCTTGTGCTTCTGGCCCAAG-AGGTCGGGGTCACCGACCACCCCGTGTC-CACCTAAGGCTTCCCTGGACACACAGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102764099 141 - 106955855 TTTAGGGGATGCGCACT-------------CTGGGGCCTGCAGGGAGAGCTCTCACTGGTCTCAACTCCATGCCTTCTGCCTTGTGCTTCCGGCCCAAG-AGGTCGGGGTCACCGACCACCCCGTGTC-CACCTAAGGCTTCCCTGGACACACAGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051703 141 +  64156825 TTTAGGGGATGCACACTCT-----------CTGGGGCCTGCAGGGAGAGCGCCCA-CGGTCTCAACTCCATGCCTTCTGCCTTGGGCTTCTGGCCCATGAAGGTCGGGGTCACCGACCACCCCGTGTC-CGCCTAAGGCTTCCCTGG--ACACAGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55077218 141 +  59248254 TTTAGGGGATGCACACACT-----------CTGGGGCCTGCAGGGAGAGCGCCCA-CGGTCTCAACTCCATGCCTTCTGCCTTGGGCTTCTGGCCCATGAAGGTCGGGGTCACCGACCACCCCGTGTC-CGCCTAAGGCTTCCCTGG--ACACAGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47179375 142 +  51301725 TTTAGGGGATGCACTCTCT-----------CTGGGGCCTGCAGGGAGAGCTCTCACCGGTCTCAACTCCATGCCTTCTGCCTTGGGCTTCTGGCCCATGAAGGTTGGGGTCACCGACCACCCCGTGTC-CGCCTAAGGCTTCCCTGG--ACACAGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884715 144 +  50890351 TTTAGGGGATGCACTCTCT-----------CCGGGGCCTGCAGGGAGAGCTCTCACCGGTCTCAACTCCATGCCTTCTGCCTTGGGCTTCTGGCCCATGAACGTCGGGGTTACTGACCACCCTGTGTC-TGCCTAAGGCTTCCCTGGACACACAGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45467960 130 +  49145316 TTAAGGGGATATACTCTGT----------------------GGGGATAGTTCTCA-CAGTCTCAGCTCCATGTCTTCTGCC-TGTGGTTCTGGCCCAAG-AGGTCAGTGTCACCAACCACCCTGTGTC-CACCTGAGGCTTCCCTGGACACACAGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1              103000615 146 + 122678785 CTGAGGGGACCCAGACCCACATTGGGC---CCAAGGCCTACATGA--AGCTACCGTGGGTCCC--TCCCAAAGCCTCCAACCTGTAGTTCTGGCCCTAGGAGGCCAGTGTCAT---CCAGCCTGCATCACTCCCAGGGCTCTATTGGGCATATGGC
i canFam3.chr1              C 0 I 1210
e mm10.chr7                   3716911 4822 + 145441459 T

a score=10476.000000
s hg38.chr19_GL949751v2_alt    184583 3 +   1002683 AGG
s panTro4.chr19              59117127 3 +  63644993 AGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55995482 3 +  60714840 AGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102764240 3 - 106955855 AGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051844 3 +  64156825 AGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55077359 3 +  59248254 AGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47179517 3 +  51301725 AGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884859 3 +  50890351 AGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45468090 3 +  49145316 AGG
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103000761 1210 + 122678785 I

a score=1216363.000000
s hg38.chr19_GL949751v2_alt    184586 442 +   1002683 GAGATGGGCAATGAGGGTGGGGGTTGTGGCCCTGCCTGTCACGGTCCCCAGCAGTGCAGATGAATTAGACCATTGAG-CCACAGAGCCTGGAGGGCAGATGGGTGTGCT-GGTATAAGGAGCCCCGGGCTCTGTGTTACAGGTCATGTGT-TCTCACCAGTGGCCTTGCAGGAGGGGAACAGCCCCTTCCCCAGGGCCTCGCTCTGCTCCCCCTGAAGGATGGGGCTGAGGGGACAGCAGGCTCTGGGGGCCTTTCAGACCACATTTGAGTCAAAATTTGACTTCCCCATAC-----TCTGCCTGCTTCCACCTCACCCAACTCTCATCCA-GGGGTGACCCTTGTTCTAGCACATGAGGCTGAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCACTGTTCTAATTCT---------------AGAGGC---------------AAGCCCCTTCCATGTCCTGAG-CTCTGTAAT-
s panTro4.chr19              59117130 441 +  63644993 GAGATGGGCAATGAGGGTGGGG-TTGTGGCCCTGCCTGTCACGGTCCCCAGCAGTGCAGATGAATTAGACCATTGAG-TCACAGAGCCTGGAGGGCAGATGGGTGTGCT-GGTATAAGGAGCCCCGGGCTCTGTGTTACAGGTCATGTGT-TCTCACCAGTGGCCTTGCAGGAGGGGAACAGCCCCTTCCCCAGGGCCTCGCTCTGCTCCCCCTGAAGGATGGGGCTGAGGGGACAGCAGGCTCTGGGGGCCTTTCAGACCACATTTGAGTCAAAATTTGACTTCCCCATAC-----TCTGCCTGCTTCCACCTCACCCAACTCTCATCCA-GGGGTGACCCTTGTTCTAGCACATGAGGCTGAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCACTGTTCTAATTCC---------------AGAGGC---------------AAGCCCCTTCCATGTCCTGAG-CTCTGTAAT-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55995485 434 +  60714840 GAGATGGGCAATGAGGGTGGGGGTTGTGGCCCTGCCTGTTACGGTCCCCAGCAGTGCAGGTGAATTAGACCACTGAG-CCACAGAGCCTGGAGGGCAGATGGGCGTGCTGGGTATAAGGAGCCCCGGGCTCTGTGTTACAGGTCATGTGT-TCTCACCAGTGGCCTTGCAGGAGGGGAACAGCCCCTCCCCCAGGGCCTCGCTCTGCTGCCCCTGAAGGATGGGGCTGAGGGGACAGCAGGCTCTGGGGGCCTTTCAGACCGTATTTGAGTC-AAATTTGACTTCCCCATAC-----TCTGCCTGCTTCCACCTCACCCAACTCTTATCCA-GGGGTGACCCTTGTTCTAGCACA------TGAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCAC--TTCTAATTCT---------------AGAGGC---------------AGGTCCCTTCTGTGTCCTGAG-CTCTGTAAT-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102764243 384 - 106955855 GAGATGGGCAATGAGGGTGGGGGTTGTGGCCCTGCCTGTCACCGTCCCCAGCAGTGCAGATGAATTAGACGACTGAG-CCACAGAGCCTGG-GGGCAGGT-GGCATGCTAGGCATAAGGAGCCCTGGGCTCTGTGTTGCAGGTCATGTGT-TCTCACCAGTGGCCTTGCAGGAGGGGAACAGCCCCTCCCCC-GGGCCTCGCTCTGCTCCCCCTGAAGGATGGGGCTGAGGGGACAGCAGGCTCTGGGGGCCTTTCAGA-------------------------------------------------CCACCTCACCCAACTCAAATCCA-GGGGTGACCCTTGTTCTAGCA--------CGAGGCTAGAG----AGGGCAGGGCCTTAGGACACAGCC----CACTGTTCTCATTCT---------------AGAGGC---------------AAGCCCCTTCCGTGTCCTGAG-CTCTGTAAC-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60051847 423 +  64156825 GAGATGGGCAATGAGGGTGGAGGTTGTGGCCCTGCCTGTCATGGTCCCCAGCAGTGCAGATG-ATTAGACCACTGAA-CCACAGAGCGTGGGGGTCAGATGGGCGTGCTGGGTATTAGGAGCCCTGGGCTCTGTGTTACAGGTCATGTGT-TCTCATCAGTGGCCTTGCAGGAGGGGAACAGCCCCTCCCCCAGGGCCTTGCTCGGCTCCCCCTGAAGGATGGGGCTGTGGGGACAGTAGGCTCTGGGGGCCTTTTAGACCACATTTGACTC------------CCCCAAGC-----TCTGCCTGCCTCCACCTCACCCAACTCAAATCCA-GGGGTGACCCTTGTTCTAGCACA------TGAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCACTGTTCTAATTCT---------------AGAGGC---------------AGGTCCCTTG-GTGTCCTGAG-CTCTGGGAT-
i rheMac3.chr19             C 0 I 292
s macFas5.chr19              55077362 423 +  59248254 GAGATGGGCAATGAGGGTGGAGGTTGTGGCCCTGCCTGTCATGGTCCCCAGCAGTGCAGATG-ATTAGACCACTGAA-CCACAGAGCATGGGGGGCAGATGGGCGTGCTGGGTATTAGGAGCCCTGGGCTCTGTGTTACAGGTCATGTGT-TCTCATCAGTGGCCTTGCAGGAAGGGAACAGCCCCTCCCCCAGGGCCTTGCCCGGCTCCCCCTGAAGGATGGGGCTGTGGGGACAGTAGGCTCTGGGGGCCTTTTAGACCACATTTGACTC------------CCCCAAGC-----TCTGCCTGCCTCCACCTCACCCAACTCAAATCCA-GGGGTGACCCTTGTTCTAGCACA------TAAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCACTGTTCTAATTCT---------------AGAGGC---------------AGGTCCCTTG-GTGTCCTGAG-CTCTGGGAT-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47179520 421 +  51301725 GAGATGGGCAATGAGGGTGGAGGTTGTGGCCCTGCCTGTCATGGTCCCCAGCAGTGCAGATG-ATTAGACCACTGAG-CCACAGAGCATGGAGGGCAGATGGGCGTGCTGGGTATAAGGAGCCCTGGGCTC--TGTTACAGgtcatgtgt-tctcatcagtGGCCTTGCAGGAGGGGAACAGCCCCTCCCCCAGGGCCTTGCTCGGCTCCCCCTGAAGGATGGGGCTGTGGGGACAGTAGGCTCTGGGGGCCTTTTAGACCACCTTTGACTC------------CCCCAagc-----tctgcctgcctccacctcaccCAACTCAAATCCA-GGGGTGACCCTTGTTCTAGCACA------TGAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCACTGTTCTAACTCC---------------AGAGGC---------------AGGTCCCTTG-GTGTCCTGAG-CTCTGTAAT-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46884862 413 +  50890351 GAGATGGGCAATGAGGGTGGAGGTTGTGACCCTGCCTGTCATGGTCCCCAGCAGTGC---------AGACCACTGAG-CCAC--AGCATGGAGGGCAGATGGGCGTGCTGGGTATAAGGAGCCCTGGGCTCTGTGTTACAGGTCATGTGT-TCTCATCCGTGGCCTTGCAGGAGGAGAACAGCCCCTCCCCCAGGGCCTTGCTCGGCTCCCCCTGAAGGATGGGGCTGTGGGGACAGTAGGCTCTGGGGGCCTTTTAGACCACATTTGACTC------------CCCCAAGC-----TCTGCCTGCCTCCACCTCACCCAACTCAAATCCA-GGGGTGACCCTTGTTCTAGCACA------TGAGGCCAGAG----AGGGCAGGGCCTTAGGACACAGCCCAGTCACTGTTCTAATTCT---------------AGAGGC---------------AGGTCGCTTC-GTGTCCTGAG-CTCTGTAAT-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45468093 419 +  49145316 GAGATGGACAATGA-AGTGGGGCTTGTGGCCCTGCCTGTCATGATCCCCAGCAGTGCAGATGAATTAGACCATTGAGCCCACAGAGCCTGGAGGGCAGATGGGTGCACTGGGTGCAAGGAGTCCCGGACTC--------------TGTGT-TCTCACCAGTGGCCTCGAAGGAGGGGAAAAGCCCCTACCCCAGGGCCTCGCTCTGCTTCCCCTGAAGGATGGGGCTGAGGGGACAGCAGGCTCT-GGGGCCTTTCAGACCACATTTGGGTC-ACGTTTGACT-CCCCATGC-----TCTGCCTGCCTCCACCGTGCCCAACCCAAATCCA--GGGTGACCCTTGTTCTAGCACA------CGAGGTCAGAG----AGGTCAGGGCCTCAGGACACAGCCCAGTCACGGTTCTAATTCT---------------AGAGGC---------------AAGTGCCTTCTGTGTCCCGAG-CTCTGCAAC-
i calJac3.chr22             C 0 C 0
s canFam3.chr1              103001971 447 + 122678785 GAGAAGGACAGTGAGGTTCAGGGTGCTGGTGCTGCTTCCCATGGTCCCCAGAGGTGCAGACAGCTTATAAAGT-----CCTCAGAGCCTACAAGATGGACAGATACTCAGGGGGTGACAGGGCCCAGGCCCTGTGTTCCCCGTCACGGGTCTCTCATGAGCAGCCTCACAG-------------CCCTGCCTAGGGCCTTGCTTTGCTCTCCCTGAAGGGTGGCCCCACAG---CAGAAATCCCT-GGGACCTTGCAGACCAGATGTGAGTC-----------TCCCCAGACCCCATTCCCTCTACCTTTTCCTCACAGATCCCATGTCCAAAGAGTGGCCATCGTACCAGGTCT------CCAggctggggaggtagggcagggcct-gggagccagtccaatgtcagttccagttctgcccctgcctgtcacagaggctgtgtgacccgggctgagacacttccctttcctgagtttctgtAAAT
i canFam3.chr1              I 1210 C 0
e mm10.chr7                   3716911 4822 + 145441459 T

a score=389133.000000
s hg38.chr19_GL949751v2_alt    185028 139 +   1002683 GCA-------TCTTTTCTTTCATGAGCCTTGCGATCAGGCGATGTTTATTCAGTGGTTACCACATCCAGGCATGCTGCCAG-----GAGGAGGGGAGTCGTGGGTGAAGCTGATAGGATTCCT-GCTGGACTCACAGAGCCTGGGTTAAT---GA
s panTro4.chr19              59117571 139 +  63644993 GTA-------TCTTTTCTTTCATGAGCCTTGCGATCAGGCGATGTTTATTCAGTGGTTACCACATCCAGGCATGCTGCCAG-----GAGGAGGGGAGTCGTGGGTGAAGCTGATAGGATTCCT-GCTGGACTCACGGAGCCTGGGTTAAT---GA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55995919 142 +  60714840 GCA-------TCTTTTCTTTCATGAGCCTCACGATCAGGCGatgtttattcagtggttaccacatccaggcatgctgccag-----gaggaggggagtcttgggtgaagctgataggattcct-gctggactcacagagctTGGGTTAATGAAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102764627 142 - 106955855 GCA-------TCTTTTCTTTCGTGAGCCTCGCGATCAGGCGatgtttattcagtggttaccacatccaggcatgctgccgg-----gaggaggggagtcatgggtgaagctgataggattcct-gctggactcacggagcttGGGTTTATGAAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60052562 140 +  64156825 GCA-------TCTTTTCTTTAATCAACCTCGCGATCAGGCG--GTGTATCGAGTGGTTACCACATCCAGGCATGCCGCCAG-----GAGGAGAGGACTTGTGGGTGAAGCTGATAGGATTCCT-GCTGGACTCACGGAGCTTGGGTTACTGAAGA
i rheMac3.chr19             I 292 C 0
s macFas5.chr19              55077785 140 +  59248254 GCA-------TCTTTTCTTTAATCAACCTCGCGATCAGGCG--GTGTATCGAGTGGTTACCACATCCAGGCATGCCGCCAG-----GAGGAGAGGACTTGTGGGTGAAGCTGATAGGATTCCT-GCTGGACTCACGGAGCTTGGGTTACTGAAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47179941 140 +  51301725 GCA-------TCTTTTCTTTCATCAGCCTCGCGATCAGGCG--GTTTATCGAGTGGTTACCACATCCAGGCATGCCGCCAG-----GAGGAGAGGACTTGTGGGTGAAGCTGATAGGATTCCT-GCTGGACTCACGGAGCTTGGGTTACTGAAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46885275 140 +  50890351 GCA-------TCTTTTCTTTCATCAGCCTCGCAATCAGGCG--GTTTATGGAGTGGTTACCACATCCAGGCATGCCGCCAG-----GAGGAGGGGACTTGTGGGTGAAGCTGATAGGATTCCT-GCTGGACTCACAGAACTTGGGTTACTGAAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45468512 142 +  49145316 GCA-------TCTTTTCTCTCATCAGCCTCATGATCAGAAGAAGTTTATTGAGCAA--GCCACATCCAGGCTTGCTGCCGGAAGGAGGGGAGGGGAGGGGTGGGTGAGGCCGGTAGGATTCCT-GCTGGACTCATGGAGCTTGCGTTAATGA---
i calJac3.chr22             C 0 C 0
s canFam3.chr1              103002418 144 + 122678785 GCAAATTTTTTCCTTCCTTCTACGAGGCTGGCAATCAAGCA-TGTTTAGTGAGAAGTCATCATATCCAGTCATGGTCCCCA-----GCACTGGAGATTCATTGTTGAGG-TGACACACTCCTTCCCTGGACTCAT-GTGCTGTGATTAGTGA---
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T

a score=1583869.000000
s hg38.chr19_GL949751v2_alt    185167 718 +   1002683 ------CACATTACCCATGTTTA-GATAGGAGGTAATTCTGCTCCGGTTTCG----------ACAAGTTGTAGGAAAGG-------AGGAAAACATG----CTCATAGCAGGTGAGCAGCGTACACCT---GTCATGGGAGTGAGGGGTCCTTCTGGGGGATGGAGAGAC-CAAGACGTGAACAGTGAGTGTG-------GCACGC--AGAGTGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAGAGTGAGCCAAAGGAAGCTGGGACCTTGTCATTCAGGGGACTTGTGCACCGTGAAGATTTATTGGATGC--TATGTTTAAGAAAATGGAAAATCCggcccggcacggtggtttgcacctgtaatcccagcactttgggaggcggaggtgggtggattatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctc--tactaaagacacaaaaaatcagccaggtgtggtggtggacgcct-gtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagattgcgccacagcactccagc-ctaggtgacagagtgagactccatctcaaa-------------------------------aaaaaaaaaaaa-----------aaaaCCGGGGAATCTTTAGAAAGCACAGTGGAAACAGATGTCTGTTTTTACAAGCCCATCAC--TGCACAGAATGCAATATGGGAGGGTTTCACTAATGGTTAACCATAACCACACTCC
s panTro4.chr19              59117710 723 +  63644993 ------CACATTACCCATGTTTA-GATAGGAGGTAATTCTGCTCCGGTTTCG----------ACAAGTTGTAGGAAAGG-------AGGAAAACATG----CTCATAGCAGGTGAGCAGCGTGCACCT---GTCACGGGAGTGAGGGGTCCTTCTGGGGGATGGAGAGAC-CAAGACGTGAACAGTGAGTGTG-------GCACGC--AGAGTGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAAAGTGAGCCAAAGGAAGCTGGGACCTCGTCATTCAGGGGACTTGTGCACCATGAAGATTTATTGGATGC----TGTTTAAGAAAATGGAAAATCCggctgggcacggtggttcacacctgtaatcccagcactttgggaggcggaggtgggtggattatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctg--tactaaagacacaaaaaatcagccaggtgtggtggtggaagccgagtag--ccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatcgcgccacagcactccagc-ctaggtgacagagtgagactccatctcaaa-----------------------aaacaaacaaacaaaaaaaa-----------caaaaCGGGGAGTCTTTAGAAAGCACAGTAGAAACAGATGTCTGTTTTTACAAGCCCATCAC--TGCACAGAATGCAATATGGGAGGGTTTCACTAATGGTTAACCATAACCACACTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55996061 719 +  60714840 ------CACATTACCCATGTTTA-GATTGGAGGTAATTCTGCTCCGGTTTCG----------ACAAGTTGTAGGAAAGG-------AGGAAAACATG----CTCATAGCAGGTGAGCAGCGTGCACCT---GTCATGGGAGTGAGGGGTCCTTCTGGGGGATGGAGAGAC-CAAGACGTGAACAGTGAGGGTG-------GCACGC--AGAGTGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAGAGTGAGCCAAAGGAAGCTGGGACCTTGTCATTCAGGGGACTTGTGCACCATGAAGATTTATTGGATGC--TATGTTTAAGAAAATGGAAAATCTggccgggcgcggtggttcacacctgtaatcccagcactttgggaggtggaggtgggtggattacgaggtcaggagttcgagaccagcctggccaacatggtgaaactccatctc--tactaaagacacaaaaaatcagccaggcgtggtggtggacgtgt-gtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccggaaggtggaggttgcagtgagccgagatcgcgccacagcactccagc-ctaggtgacagagtgagactccgtctcaa--------------------------------aaaaaaaaaaaa-----------aaaaagaGGGAATCTTTAGAAAGCACAGTAGAAACAGGTGTCTGTTTTTACAAGCCCATCACTGTGCACAGAAGGCAATATGGGAGGGTTTTACTAATGGTTAACCATAACCACACTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102764769 747 - 106955855 ------CACATTACCCATGTTTA-GATAAGAGGTAATTCTGCGCCGGTTTCA----------ACAAGTTGTAGGAAA-----------AAAAACATG----CTCAT---AGGTGAGCAGCGTGCACCT---GTCACGGGAGTGAGGGGTCCTTCTGGGGGATGGAGAGAC-CAAGATGTGAACAGCGAGTGTG-------GCGCGCGGAGGGCGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAGAGTGAGCCAAAGAAAGATGGGACCTTGTCATTCAGGGGACTTGTGCACCATGAGGATTTATTGGATGC--TATGTTTAAGAAAATGGAAAATCCAgccgggcgcggtggttcacacctgtaatcccagcactatgggaggtggaggcgggtggattacaaggtcaggagttcgagaccagcctggccagcatggtgaaaccccgtctctatactaaagacacaaaaaattagccaggcgtggtgatggatgcct-gtaatcccagctactcgggaggctgaggcaggagaatcacttgaaaccaggaggtggaggttgcagtgagccaagatcgcgccacagcactccagcactaggtgacagagtgagactccgtctcacaaaaaaaaacaaaaaaaaaaaacaaaacaaacaaacaaaaaaaa-----------aaaaaCAGGGAATCTTTAGAAAGCACAGTAGAAACAGGTGTCTGTTTTTACAAGCCCATCAC--TGCACAGAATGCAATATGGGAGGGTTTTACTAATGGTTAACCATAACCACACGCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60052702 716 +  64156825 ------CACATTACCCATGGTTA-GACAGGAGGTAATTCTGCTCCGGTTTCG----------ACAAGTTGTAGGAAAGG-------AGGAAAACATG----CCCATAGCGGGTGAGCAGCGTGCACCT--GGTCACGGGAGTGAGGGGTCCTTCTAGGGGATGGAGAGAC-CAAGACGTGAACAGCGAGTGTG-------GTGCGTGGAGGGCGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAGAGTGAGCCAAAGAAAGCTGGGACCTTGTCATTCAGGGGTCTTGTGCACCATGAAGATTTATTGGATGTTATACGTTTAAGAAAATGGGAGATCTggctgggcgcggtggttcacacctgtaatcctagcactttgggaggtggaggtgggcagattacgaggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctc--tactaaagatataaaaaattaaccaggcgtggtggtggacacct-ggaatcccagctgctttggaggctaaggcaagagaatcactggaacccaggaggcggagtttgcagtgagccgagattgtgccacagcgctctagc-ctgggcgacagagtgag-ctccgtctcaaa-------------------------------aaaaaaagaaaa----------------TGGGGAATCTTTAGAAAGCACAGTAGAAACAGACGTCTCTTTATACAAGCCCAACAC--TGCACAGAATGCAATAT-GGAGGGTTTTACTGACGGTTAACCATAACCACACTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55077925 717 +  59248254 ------CACATTACCCATGGTTA-GACAGGAGGTAATTCTGCTCCGGTTTCG----------ACAAGTTGTAGGAAAGG-------AGGAAAACATG----CCCATAGCGGGTGAGCAGCGTGCACCT--GGTCACGGGAGTGAGGGGTCCTTCTAGGGGATGGAGAGAC-CAAGACGTGAACAGCGAGTGTG-------GTGCGTGGAGGGCGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAGAGTGAGCCAAAGAAAGCTGGGACCTTGTCATTCAGGGGTCTTGTGCACCATGAAGATTTATTGGATGTTATACGTTTAAGAAAATGGGAGATCTggctgggcgcggtggttcacacctgtaatcctagcactttgggaggtggaggtgggcagattacgaggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctc--tactaaagatataaaaaattaaccaggcgtggtggtggacacct-ggaatcccagctgctttggaggctaaggcaagagaatcactggaacccaggaggcggagtttgcagtgagccgagattgtgccatagcgctctagc-ctgggcgacagagtgagactccgtctcaaa-------------------------------aaaaaaagaaaa----------------TGGGGAATCTTTAGAAAGCACAGTAGAAACAGACGTCTGTTTATACAAGCCCAACAC--TGCACAGAATGCAATAT-GGAGGGTTTTACTGACGGATAACCATAACCACACTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47180081 725 +  51301725 ------CACATTACCCATGGTTA-GACAGGAGGTAATTCTGCTCCGGTTTCG----------ACAAGTTGtaggaaagg-------aggaaaacatg----CCCATAGCAGGTGAGCAGCGTGCACCT--GGTCACGGGAGTGAGGGGTCCTTCTAGGGGATGGAGAGAC-CAAGACGTGAACAGCGAGTGTG-------GTGTGTGGAGGGCGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGACCTGAGAGTGAGCCAAAGAAAGCTGGGACCTTGTCATTCAGGGGTCTTGTGCACCATGAAGATTTATTGGATATTATACGTTTAAGAAAATGGGagatctggctgggcgcagtggttcacacctgtaatcctagcactttgggaggcggaggcgggcagattacgaggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctc--tactaaagatataaacaattaaccaggcatggtggtggacacct-ggaatcccagctgctttggaggctgaggcaggagaatcactggaacccgggaggcggagtttgcagtgagctgagattgtgccacagcactctagc-ctgggcgacagagtgagactccctctcaaa-------------------------------aaaaaaaaaaaa--------aggaaaatgggggAATCTTTAGAAAGCACAGTAGAAACAGACGTCTCTTTATACAAGCCCAACAC--TGCACAGAATGCAATAT-GGAGGGTTTTACTGACAGTTAACCATAACCACACTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46885415 733 +  50890351 ------CACATTACCCATGGTTA-GACAGGAGGTAATTCTGCTCCAGTTTCA----------ACAAGTTGTAGGAAAGG-------AGGAAAACATG----CCCATAGCGGGTGAGCAGCGTGCACCT--GGTCATGGGAGTGAGGGGTCCTTCTAGGGGATGGAGAGAC-CAAGACGTGAACAGCGAGTGTG-------GTGCGTGGAGGGTGTCCTCCACCAGAAACAGTGTGGGCTGTTCTCAGATCTGAGAGTGAGCCAAAGAAAGCTAGGACCTTGTCATTCAGGGGTCTTGTGCACCATGAAGATTTATTGGATGTTATATGTTTAAGAAAATGGGAGATCTggctgggcgcggtggttcacacctgtagtcctagcactttgggaggcggaggcgggcggattacgaggtcaggagttcgagaccagcctggccaacatagtgaaaccccctctc--tactaaagatacaaaaaattaaccaggcgtggtggtaggcgcct-ggaatcccagttgctttggaggctgaggcaggagaatcactggaacccgggaggcggagtttgcagtgagctgagatggtgccacagcgctctagc-ccgggcgacagagtgagactccgtctcaaa-------------------------------aaaaaaaaaaaagaaagaaaaaagaaaATGGGGAATCTTTAGAAAGCACAGTAGAAACAGACGTCTGTTTATACAAGCCCAACAC--TGCACAGAATGTAATAT-GGAGGGTTTTACTGACGGTTAACCATAACCACACTCC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103002562 424 + 122678785 CCAACAGACAATACAAATATTTAGGGGAGAAAACAATTCTACTATGGTCTAATAAGAGTCTTCCAAGTTGGAAGAAAAAAGAAAACAGGGAACCATGAGATTCGGTAACATGTAGATGTCATACAACCTGGGTCCTGGTCATGAGAGGTCCTTCTAGGGGATGGAATGATGGAAGGCACAAGCCAGGGGTATGCAGAGACGAGAGTGGGGGACATCCTCAACCAGAAAGATCTTGAGCTGTTCTCAGAACCGAGAGTGATC---AGGAGGCCAggaccttgtcacgca-ggattttgagccccaag------------------------taagca-------------------------------------------------tttggga------------------------------------------------------------------tttc--tact---------------------------------------t------------------------taaggcaatgggaagattttaacc----------------------------------------------agc-------------------------------------------------------------------------a------------------gagagtc-----------------aaacaaatttctgtctggaaaagactaACAC--TGTAAGAAAT------------------ACTGACAATTA---GTAGTAAAATTCC
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e calJac3.chr22              45468654   0 +  49145316 C

a score=113253.000000
s hg38.chr19_GL949751v2_alt    185885 42 +   1002683 AGCGTGAGCCCAGCCACTAGGCAATGTGCTGATAAGGATTCT
s panTro4.chr19              59118433 42 +  63644993 AGCGTGAGCCCAGCCACTAGGCAATGTGCTGATAAGGATTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55996780 42 +  60714840 AGCGTGAGCCCAGCCGCTAGGCGATGTGCTGATAAGGATTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102765516 42 - 106955855 AGTGTGAGCCCAGCCGCTAGGCGATGTGCTGATAAGGATTCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60053418 42 +  64156825 ATTGTGAGCCCCACCGCTAGGTGATGTGCTAATAAGGATTCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55078642 42 +  59248254 ATTGTGAGCCCCACCGCTAGGTGATGTGCTAATAAGGATTCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47180806 42 +  51301725 ATTGTGAGCCCCACCGCTAGGTGATGTGCTAATAAGGATTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46886148 42 +  50890351 ATTGTGAGCCCCACCGCTAGGTGACGTGCTAATAAGGAGTCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45468654 42 +  49145316 AGTGTGAACCCAGTTGCTAGGTGATATGCTGATCAGGAttct
i calJac3.chr22             C 0 I 1844
s canFam3.chr1              103002986 34 + 122678785 AGCATTCATGTGGTCTCTGGGT--TGTGCTGATCAG------
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T

a score=1145860.000000
s hg38.chr19_GL949751v2_alt    185927 501 +   1002683 AAGTGGTTTATGTGGACTCCTCATG-ACCTATGACAC-ACATACGTTTACAGTGGAGTGGAACGAGGCAGGAGGGCTTCTCTTTGTCATAGTCTAC----------CAGCTCTGCAGAGGTG-TCAGCTACATCCGGATTGGCTCAGGGAGCGG-CCGTCAGAAGACTT-ACACGTGTTTAATAACTGAGGTTGTGTGTGTGTGGCAGGGGG--TGGGTAACTGTGA---TGAGTTTGGTGTGGCAGAGGGGGAGCCATAGCCTGTGAAGCTGGAAAGTGTATCAGGTTTGGTCATCAACAGGCTTGAACATGAAGTACAGGAACGTGCATCTTATTTTTGGAAGATGGAGCCCCGTTGGGGGAATTTGAGCAGT-----GGAGGGTCACAGCCAGGTAAGATGGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGACTGGAGTAGGGATGGGAGCCAG--TAGGGGGCCAGGAGGGAGGTTGGT-GCAGTG-CACAGACAGGG-CGTCCTCGGTCCCCAGCTGAGCT
s panTro4.chr19              59118475 495 +  63644993 AAGTGGTTTATGTGGACTCCTCATG-ACCTATGACAC-ACATACGTTTACAGTGGAGTGGAACGAGGCAGGAGGGCTTGTCTTTGTCATAGTCTAC----------GAGCTCTGCAGAGGTG-TCAGCTACATCCGGATTGGCTCAGGGAGCGG-CCGTCAGAAGACTT-ACATGTGTTTAATAACTGAGGTTGTGTGTATGTGGCAGGGGG--TGGGTAACTGTGA---TGAGTTTGGTGTGGCA------CAGCCATAGCCTGTGAAGCTGGAAAGTGTATCAGGTTTGGTCATCAACAGGCTTGAACATGAGGTACAGGAACGTGCATCTTATTTTTGGAAGATGGAGCCCCGTTGGAGGAATTTGAGCAGT-----GGAGGGTCACAGCCAGGTAAGATGGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGACTGGAGTAGGGATGGGAGCCAG--TAGGGGGCCAGGAGGGAGGTTGGT-GCAGTG-CACAGACAGGG-CGTCCTCGGTCCCCAGCTGAGCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55996822 498 +  60714840 GAGTGGTTTACGTGGACTCCTCATG-ACCTGTGACAC-ACATACATTTACAGTGGAGTGGAACGAGGCAGGAGGGCTTGTCTTTGTCATAGTCTAC----------AAGCTCTGCAGAGGTG-TCGGCTACATCCAGATTGGCTCAGGGAGCGG-CTGTCAGAAGACTTAACACTTGTTTAATAACTGAGGTGGTGTGTGTCTGGCAGGGAG--CGGGTAAC--TGA---TGAGTTTGGTGTGGCAGAGGGGGAGCCATAGCCTGTGAAGCTGGAAA--GTATCAGGTTTGGTCATCAACAGGCTTGAACATGAGGTACAGGAACGTGGATCTTATTTTTGGAAGATGGAGCCCCATTGAAGGAATTTGAGCCGT-----GGAGGGTCACAGCCAGGTCAGATTGTCAGAAGAGGCCTT------GGAAGTGATGAGAGGGATGGGCTGGAGTAGGGATGGGAGCCAG--TA-GGGGCCAGGAGGGAGGCTGAT-GTAGTG-CACTGACAGGGCCGTCTTCGGTCTCCAGCTGAGCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102765558 500 - 106955855 AAGTGGTTTACGTGGACTCCTCATG-ACCTGTGACAC-ACATACATTTACAGTGGAGTGGAACGAGGCAGGAGGGCTTGTCTTTGTCATCGTCTAC----------GAGCTCTGCAGACGCG-TCGGCTACATCCAGATCGGCTCAGGGAGCAG-CCATCAGAAGACTT-ACACGTGTTTAATAACTGAGGTTGTGTGTGTCTGGCAGGGGG--TGGGTAACTGTGA---TGAGTTTGGTGTGGCAGAGGGGGAGCCATAGCCTGTGAAGCTGGAAAGTGTATCAGGTTTGGTCATCAACAGGCTTGAACGTGAGGCACA-GAACGTGAATCTTATTTTTGGAAGATGGAGCCCCGTTGAAGGAATTTGAGCAGT-----GGAGGGTCACAGCCAGGTAAGATTGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGACTGGAGTAGGGATGGGAGCCAG--TAGGGGGCCAGGAGGGAGGTTGAT-GCAGTG-CACAGACGGGG-CGTCCTCCATCTCCAGCTGAGCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60053460 492 +  64156825 CAGTGGTTTGTGTGGACTCCTCATG-ACCTGTGACAC-AAATATGTTTGCAGTTGAGTGGAATGAGGCAGGAGGGCTTGTCTTTATCATTGTCTAC----------GAGCTCTGCAGAGGCGCCCGGCTACATCCAGATTGGCTCAGGAAGCAG-CCATCAGAAGACTT-ACCAGTGTTCAATAACGGAGGGTGTGTGTGTCTGGCAGAGGG--TGGGTGACTGTGA---TGAGTTTGCTGTGGCAGAGCGGGAGCCATAGCCCCTGAAGCTGGAAAGCGTATCGGGTTTGGTCATCAACAGGCTTGAACATGAGGTACAGGAACGTGGATCCTATTTCTGGAAGATGGAGCCCCGTCGAAGGAATTTGAGCAGT-----GGAGGGTCAGAGCCAGGTGAGATTGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGATGGGAGCCGGG---------AG--TAGGAGGCCAGGAGGGA-GCTGAC-GCAGTG-CACAGACAGGG-CGTCCTTGGTCTCCAGCTGAGCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55078684 492 +  59248254 CAGTGGTTTGTGTGGACTCCTCATG-ACCTGTGACAC-AAATATGTTTGCAGTTGAGTGGAATGAGGCAGGAGGGCTTGTCTTTATCATTGTCTAC----------GAGCTCTGCAGAGGCGCCCGGCTACATCCAGATTGGCTCAGGAAGCAG-CCATCAGAAGACTT-ACCAGTGTTCAATAACGGAGGGTGTGTGTGTCTGGCAGAGGG--TGGGTGACTGTGA---TGAGTTTGCTGTGGCAGAGCGGGAGCCATAGCCCGTGAAGCTGGAAAGCGTATCGGGTTTGGTCATCAACAGGCTTGAACATGAGGTACAGGAACGTGGATCTTATTTCTGGAAGATGGAGCCCCGTCGAAGGAATTTGAGCAGT-----GGAGGGTCAGAGCCAGGTGAGATTGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGATGGGAGCCGGG---------AG--TAGGAGGCCAGGAGGGA-GCTGAC-GCAGTG-CACAGACAGGG-CGTCCTTGGTCTCCAGCTGAGCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47180848 502 +  51301725 AAGTGGTTTGCGTGGACTCCTCATG-ACCTGTGACAC-AAATATGTTTGCAGTTGAATGGAACGAGGCAGGAGGGCTTGTCTTTATCATCGTCTACGAGCTCTGCAGAGCTCTGCAGAGGCG-TCGGCTACATCCAGATTGGCTCAGGAAGCAG-TCATCAGAAGACTC-ACAAGTGTTCAATAAcggagggtgtgtgtgtctggcAGGGGG--TGGGTGACTGTGA---TGAGTTTGCTGTGGCAGAGCGGGAGCCATAGCCTGTGAAGCTGGAAAGCGTATCGGGTTTGGTCATCAACAGGCTTGAACATGAGGTACAGGAACGTGGATCTTATTTCTGGAAGATGGAGCCCCGTCGAAGGAATTTGAGCAGT-----GGAGGGTCAGAGCCAGGTGAGATTGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGATGGGAGCCGGG---------AG--TAGGGGGCCAGGAGGGA-GCTGACGGCAGTG-CACAGACAGGG-CGTCCTCGGTCTCCAGTTGAGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46886190 491 +  50890351 GAGTGGTTTGCGTGGTGTCCTCATG-ACCTGTGACAC-AAACATGTTTGCAGTTGAGTGGAACGAGGCTGGAGGGCTTGTCTTTATCATAGTCTAC----------GAGCTCTGCAGAGGCG-TCGGCTACATCCAGATTGGCTCAGGGAGCAG-TCATCAGAAGACTT-ACAAGTGTTCAATAACGGAGGGTGTGTGTGTCTGGCAGGGGG--TGGGTGACTGTGA---TGAGTTTGCTGTGGCAGAGCGGGAGCCATAGCCTGTGAAGCTGGAAAGCGTATCGGGTTTGGTCATCAACAGGCTTGAACATGAGGTACAGGAACGTGGATCTTATTTCTGGAAGATGGAGCCCCGTCGAAGGAATTTGAGCAGT-----GGAGGGTCAGAGCCAGGTGAGATTGTCAGAAGAGGCCTC------GGAAGTGATGAGAGGGATGGATGGGAGGCGGG---------AG--TAGGGGACCACGAGGGG-GCTGAC-GCAGTG-CACAGACAGGG-CGTCCTCGGTCTCCAGCTGAGCT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103003020 463 + 122678785 --------TATTTAAGCCTCACATGAACCTATCATACAAAACACATGTACAGTTGAGCAGAACGAGCCAGGATGGCTTCTCC--------ATCTGG----------CAGGT-TGGGGAGGAG-TTGGCCAGGTTCAGATTGGCTAAGGAGACAGCCCGAGAAAAGGCGT-GGAATTGTTGAGTAGCTCAGTGTGTGT-TGCTTGGGAAGGTATTTGGGTGAGAGGGGAGTTGTGTTTGCTGGGGC-------------TAGTGGGTTTAGC-----------TCTGGCCTGATGGTC-ACAGCCTTAAAGATGAGATAGTGCAACTTATATC---TTTCTGAAGGAGAG-----TGTGGGAGGGTTTTGAGCATCCCACAGGATGAGCCCAGCCTGGTGA-----TTAGTAGGGTCTTCTAATCTAGAGGTGGTGAGAGGAATGCAATGGGGAGAGG---GGGGCCTGCTTGGAGGAGCAGTGGGGAGGCTGAT-CTGCTGACGCACACAGA--CTTCTTGAGTCTTGCGATGGGTT
i canFam3.chr1              C 0 I 48
e mm10.chr7                   3716911 4822 + 145441459 T
e calJac3.chr22              45468696 1844 +  49145316 I

a score=267639.000000
s hg38.chr19_GL949751v2_alt    186428 115 +   1002683 TAGACTGTGGGGATGGACCAGC-GGACACGGGTGGAGCCGGGTGAGGAGGGATGTGGGCAGAGAGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAAGAGTGTGA-------GGAGCTTTTCC
s panTro4.chr19              59118970 115 +  63644993 TAGACTGTAGGGATGGACCAGC-GGACACGGGTGGAGCCGGGTGAGGAGGGATGTGGGCAGAGAGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAAGAGTGTGA-------GGAGCTTTTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55997320 112 +  60714840 TAGACTGTGGGGATGGACCAGCGGGACACGGGTGGAGCCGGGTGACGAGGGATGGGGAC----CGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAAGAGCGTGA-------GGAGCTTTTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102766058 114 - 106955855 TAGACTGTGGGGATGGACCAGC-GGACACGGGTGGAGCCGGGTGAGGAGGGATGGGGGCAGCGCGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAA-AGTGTGA-------GGAGTTTTCCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60053952 115 +  64156825 TGGACTGTGGGGATGGACCAGG-GCACATGGGTGGAGCCAGGTGAGGAGCAATGGGGGCAGAGCGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAAGAGTGTGA-------GGAGCTTTTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55079176 110 +  59248254 TGGACTGTGGGGATGGACCAGG-GGACATGGGTGGAGCCAGGTGAG-----ATGGGAGCAGAGCGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAAGAGCGTGA-------GGAGCTTTTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47181350 115 +  51301725 TGGACTGTGGGGATGGACCAGG-GGACACGGGTGGAGCCAGGTGAGGAGCAACGGGGGCAGAGTGGTTTGAATTTGTTCAGTGTGTGTGAAGCAGAAGAGCGTGA-------GGAGCTTTTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46886681 115 +  50890351 TGGACTGTGGGGATGGACCAGG-GGACACGGGTGGAGCCAGGTGAGGAGCGACGGGGGCAGAGCGGTTTGGATTTGTTCACTGTGTGTGAAGCAGAAGAGCGTGA-------GGAGCTTTTCC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19724006 107 - 122678785 -TGACTGTGGTGATGG-------TCGCATTAATGGA-----ATGAG--GGCTCCCGGGCAGAACTGTGTGGAGTCG-TCATCGTGTGTCATGTAGAAGGGTGTGAAGCACGGAGAGCTCTCTC
i canFam3.chr1              I 64854 T 23254
e mm10.chr7                   3716911 4822 + 145441459 T
e calJac3.chr22              45468696 1844 +  49145316 I

a score=433570.000000
s hg38.chr19_GL949751v2_alt    186543 182 +   1002683 ACTCTCTGCCTTGGTTGATGGGAGGAACCAGTGGGGCTGCCGCAGGACAGACGACCCGCGTGGGAGAAGGAGGCTCGGGGAGATGTTTCTAAGAC--TTAACTTGCTCACAGAGGGAAGCACAA-GCTTCCTTCGAGCCTGGG---------CTTTGTTTTCCCAAACAGGTCCCTTCACTGACtttc-tttttt
s panTro4.chr19              59119085 182 +  63644993 ACTCTCTGCCTTGGTTGATGGGAGGAACCAGTGGGGCTGCCGCAGGACAGACGACCCGCGTGGGAGAAGGAGGCTTGGGGAGATGTTTCTAAGAC--TTAACTTGCTCACAGAGGGAAGCACAA-GCTTCCTTCGAGCCTGGG---------CTTTGTTTTCCCAAACAGGTCCCTTCACTGACtttc-tttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55997432 184 +  60714840 ACTCTCTGCCTTGGTCGATGGGAGGAGCCAGTGGGGCCGCCACAGGACAGACGACCTGCGTGGGAGAAGGAGGCTGGGGGAGATGTTTCTAAGACTGTTAACTTGCTCACAGAGGGAAGCACAA-GCTTCCTTCGAGCCTGGG---------TTTTGTTTTCCCAGACAGATCCCTTCACTGACtttc-tttttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102766172 184 - 106955855 ACTCTCTGCCTTGGTTGATGGGAGGAGCCAGTGGGGCCGCCGCAGGACAGATGACCCGCGTGGGAGAAGGAGGCTGGGGGAGATGTTTCTAAGACTGTCAACTTGCTCACAGAGGGAAGCACGA-GCTTCCTTCGAGCCTGGG---------TTTTGTTTTCCCAAACAGGTCCCTTCACTGACtttc-tttttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60054067 182 +  64156825 ACTCTCTGCGTTGGTTGATAGGAGGAGCCGGTGGGGCCGCCACAGGACAGACGGCCCGCATGGGAGAAGGAGGCCTGGGGAGGTATTTCTAAGACCGTT---TCGTTCACAGAGGGAAGCACAA-GCTTCCTTCAAGCCTGGG---------TTTTGTTTCCCCAAACAGGTGCCTTCCCTGACtttcttttttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55079286 181 +  59248254 ACTCTCTGCGTTGGTTGATAGGAGGAGCCAGTGGGGCCGCCACAGGACAGACGGCCCACATGGGAGAAGGAGGCCTGGGGAGGTATTTCTAAGACCGTT---TCGTTCACAGAGGGAAGCACAA-GCTTCCTTCAAGCCTGGG---------TTTTGTTTTCCCAAACAGGTGCCTTCCCTGACTGAC-tttttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47181465 178 +  51301725 ACTCTCTGCTTTGGTTGATAGAAAGAGCCAGTGGGGCCGCCACAGGACAGACGACCCGCATGGGAGGAGGCGGCCTGGGGAGGTGTTTCTAAGACCGTT---TCGTTCACAGAGGGAAGCACAA-GCTTCCTTTGAGCCTGGG---------TTTTGTTTCCCCGAACAGGTGCCttccctgact----tttttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46886796 179 +  50890351 ACTGTCTGCGTTGGTTGATAGGAGGAGCCGGTGGGGCCGCCACAGGACAGGCGACCCGCGTAGGGGGAGGAGGCCTGGGGAGGTGTTTCTAAGACCGTT---TCGCTCACAGA--GAAGCACAA-GCTTCCTTCGAGCCTGGG---------TTTTGTTTCCCTGAACAGGTGCCTTCCCTGACtttc-tttttt
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              103003531 188 + 122678785 ACTCTCTGTCT--GGTGCCTGGAGGAGCCAGTGGGGCCATCCCAGGA-GGATGATCCA---GGAAAAGGCAGGGACTGGGAGGTGATTTGAAGACAGATCATCATTTCTCAGAAGGAAGCATGACCCTTCCTCCTACCCTGGGATTGTGGATTTTCTTTGTACCCCACACTTCCCTTCACTGACTTCC-TTATTT
i canFam3.chr1              I 48 T 5795
e mm10.chr7                   3716911 4822 + 145441459 T
e calJac3.chr22              45468696 1844 +  49145316 I

a score=89658.000000
s hg38.chr19_GL949751v2_alt    186725 37 +   1002683 ------gagacggagtctcgctctgtcgcccaggctggagtgc
s panTro4.chr19              59119267 37 +  63644993 ------gagacggagtctcgctccgtcgcccaggctggagtgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55997616 37 +  60714840 ------gagacggagtctcaatctgtcgcccaggctggagtgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102766356 37 - 106955855 ------gagacggagtctcgctctgttgcccaggctggagtgc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60054249 43 +  64156825 tttttagagacggattctcgctctgtcgcccaggctggagtgc
i rheMac3.chr19             C 0 M 651
s macFas5.chr19              55079467 43 +  59248254 tttttagagacggattctcgctctgtcgcccaggctggagtgc
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47181643 43 +  51301725 ttttttgagacggagtctcgctctgtcacccaggctggagtgc
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46886975 43 +  50890351 ttttaagagacggagtctcgctctgtcccccaggctggagtgc
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e calJac3.chr22              45468696 1844 +  49145316 I

a score=910.000000
s hg38.chr19_GL949751v2_alt    186762 1 +   1002683 a
s panTro4.chr19              59119304 1 +  63644993 a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55997653 1 +  60714840 a
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102766393 1 - 106955855 a
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               46887018 1 +  50890351 a
i chlSab2.chr6              C 0 I 10
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e calJac3.chr22              45468696 1844 +  49145316 I
e papAnu2.chr19              47181686 1 +  51301725 I
e macFas5.chr19              55079510 1 +  59248254 I
e rheMac3.chr19              60054292 651 +  64156825 M

a score=646446.000000
s hg38.chr19_GL949751v2_alt    186763 588 +   1002683 gtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaatcttttgtatttttagtagagacggggtttcaccgtgctagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccatcgcgcccagccAACTTTCCTGTTAATGAGTAGCA--CTCTTTTtttctttcttttctttcccccttttttttttttttt-----agacatggtcttgctctgtttcccaggctggagtgcagtggcgtgaccccagctcactacaacctccacctcctgggttcaggtgattgtcctgcttcagcctcccaagtagct-ggattacaggcacgtgcaaccacgcctggctaatttttgtatttttagtagagacagagtttcaccatgttggccaggctattctcgaactcctgaccttaaatcatcctcttgccttggccccccaaagtgttaggattacaggcatgagccatcatgctcggc
s panTro4.chr19              59119305 580 +  63644993 gtggcgcgatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaatcttttgtatttttagtagaggcggggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccAACTTTCCTGTTAATGAGTAGCA--CTCTTTTtttctttcttttctttcc-----tttttttttcttt-----agacacggtcttgctctgtttcccaggctggagtgcagtggcgtga---cagctcactacaacctccacttcctgggttcaggtgattgtcctgcttcagcctcccaagtagct-ggattacaggcacgtgccaccatgcctggctaatttttgtatttttagtagagacagagtttcaccatgttggccaggctggtcttgaactcctgaccttaaatcatcctcttgccttggccccccaaagtgttaggattacaggcatgagccatcatgcttggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55997654 573 +  60714840 gtggcgcgatctcggctcactgcaagctccgcttccggggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcacccgccaccacgcccggctaattttttgtatttttagtagagacagagtttcactgtgttagccaggaaggtctcaatctcctgacctcatgacctgcccgcctcggccttccaaagtgctgggattacaggcatgagccactgcgcccagccAGCTTTCCTGTTAATGAGTAGCACTCTCtttttttctttctcttctttcctttcttttttttttttttttaaaagacatggtcttgctctgtttcccaggctggagtgcagtggcgtgatctcagctcactacaacctccacctcctgggttcaggtgattgtcctgcctcagcctcccaagtagct-ggattacaggcacgtgccaccacgcctcactaatttttgtatttttagtagagacggagtttcaccatgttggccagcctgttcttaaac----------------------tgccttggcctcccaaagtgttaggattacaggcatgagccaccatgcttggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102766394 518 - 106955855 gtggcgcgatctcggctcactgcaagctccacctcccaggttcac-ccagtctcctgcctcagcctcccgagtagctgggactacaggtgcccaccaccacgcccggctaatgttttgtttcttcagtagagacagagtttcactgtgttagccaggatggtctcaatctcctgacctcgtgacccgcccgtctcggcctcctaaagtggt-ggattacaggcgtgaggcaccgcacccggccAACtttcct----------------------------------------------attttttttttta-----agacgcggtcttg--ctgtttcccagggtggatggcagtggcatgatctcagctcactaccacctccacctcctcggttcaggtgattgtcctgcctcagcctcccaagtagct-ggattacaggcacgtgccaccacgcctggctaatttttgtatttttagtagagatggagtttcaccatgttggccaggctgttctcaaac----------------------tgcgttggcctcccaaagtgttaggagtacaggcatgagccaccatgcttggc
i nomLeu3.chr10             C 0 M 1151
s macFas5.chr19              55079511 568 +  59248254 gtggcgcgatctcggctcactgcaagctccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcg-ccgccaccatgcccggctaa-tttttgtatttttactagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgattcgcctgcctcggcctcccaaagtgctggggttacaggcgtgagccaccgcgcccggccAACTTTCCTGTTA--GAGTAGCA--Ctctctctt------ttttctt--------ttcttttttttca-----agacacggtcttgctctgtttcccatgctggagtgcagtggcatgatctcagctcactggaacctccacctcctgggttcaggtgattgtcctgcctcagcctcccaagtagct-ggattacaggtgtgtgccaccacacctggctaatttttgtatttttagtagagac--agtttcaccatgttggccaggctgttctcgaactcctgacttcaattaatcctcttgccttggcctcccaaagtgttaggattacaggcgtgagccaccatgcttggc
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47181687 578 +  51301725 gtggcacgatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggaccacaggcgcccgccaccacgcccggctaattttttgtatttttactagagacggggtttcaccgtgttatgcaggacggtctcgatctcctgacctcgtgattcgcccgcctcagcctcccaaagtgctggggttacaggcgtgagccaccgcgcccggccaactttccTGTTA--GAGTAgca--ctctctcttt-tttcttttctt--------ttcttttttttca-----agacacaatcttgctctgtttcccatgctggagtgcagtggcgtgatctcagctcactggaacctccacctcctgggttcaggtgattgtcctgcctcagcctcccaagtagctaagattacaggtgtgtgccaccacacctggctaatttttgtatttttagtagagacagagtttcaccatgttggccaggctgttctcaaactcctgacttcaattaatcctcttgccttggcctcccatagtgttaggattacaggcgtgagccaccatgtttggc
i papAnu2.chr19             I 1 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e calJac3.chr22              45468696 1844 +  49145316 I
e chlSab2.chr6               46887019  10 +  50890351 I
e rheMac3.chr19              60054292 651 +  64156825 M

a score=163217.000000
s hg38.chr19_GL949751v2_alt    187351 213 +   1002683 cTCTTTTttctttttctttttttttttttttgtttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcagcctccacctcccaggtgccagcgattctcctgcctcaatctcccagttagctgggattacagatgcgcgccaccatatccagctaaattttgtattttttagtaaagacagag
s panTro4.chr19              59119885 211 +  63644993 cTCTTttttctttttc--tttctttttttttgtttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgtgatctcagctcactgcagcctccacctcccaggttccagcgattctcctgcctcaatctcccagttagctgggattacagacgtgcgccaccatatccagttaaattttgtattttttagtaaagacagag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55998227 201 +  60714840 ctcttttttctttttc------------tttgtttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcagctcactgcagcctccacttcccaggttccagcgatgctcctgcctcaatctcccggttagctgggattacagatgcgcgccaccatgtctggctaaattttgaattttttagtagagatggag
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55080079 197 +  59248254 ctcttttttctttttc----------------tttttgagatagagtcttgctctgtcacccaggctggagtgcagtggtgccatctcagctcactgcagcctccacctcccaggttccagcaattctcctgcctcagcctccctggtagctgggattacagatgcgcgccaccatgtccggctaatttttgtattttttagtagagatggag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47182265 197 +  51301725 ctcttttttctttttc----------------tttttgagatagagtcttgctctgtcacccaggttggagtgcagtggtgccatctcagctcactgcagcctccacctcccaggttccagcaattctcctgcctcagcctccctggtagctgggattacagatgcgtgccaccatgtccggctaatttttgtattttttagtagagatggag
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019  10 +  50890351 I
e rheMac3.chr19              60054292 651 +  64156825 M

a score=687469.000000
s hg38.chr19_GL949751v2_alt    187564 541 +   1002683 ttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatccgcccgcttcagcctcccaaagtgttgggattacgggcatgagccaccatgctcggcctcttttttctttgcttaaaagatgaggcctgttgcccaggctggagtgcagtggcactatcatagctcactgcagccttgacatcgtggctcaggtgatcctcccgcctcaggctcccgag------------tggctgggactacagacgtgcacctccacagccactacttatttttgtaGCGatgtctatcagctggtgaatagag----aaagtgtggtatatccttacaacaaaatattattcaaccgtagaaaggaatgaagtactcatacatgctacatgtgtgaaccttgataatatactagataaaagcagtcaggaaaaaaaggtcacatatgacgttatttcatttataagaagtatccagcctgggtgtggtggctcattgcctgtaatccagcactttgggaggccaaggcaggtggattgcctgagtttaggagtt
s panTro4.chr19              59120096 540 +  63644993 ttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgttgggattacgggcatgagccaccatgctcagcctcttttttctttgcttaaaagatgaggcctgttgcccaggctggagtgcagtggcactatcatagctcactgcagccttgacatcgtggctcaggtgatcctcccgcctcaggctcccgag------------tggctgggactacagacatgcacctccacagccactacttatttttgtaGCGatgtctatcagctggtgaatagag----aaagtgtggtatatccttacaacaaaatattattcaaccgtagaaaggaatgaagtactcatacatgctacatgtgtgaaccttgataatatactagataaaagcagtcaggaaaaaaaggtcacatatgacgttatttcatttataagaagtatccagcctgggtgtggtggctca-tgcctgtaatccagcactttgggaggccaaggcaggtggattgcctgagtttaggagtt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              55998428 544 +  60714840 tttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccacctcagcctcccaaagcgttgggattacgggcatgagccaccatgctcagcctcttttttctttgcttaaaagatgaggcctgttgcccaggctggagtgcagtggcactatcatagctcactgcagccttgacatcgtggctcaagtgatcctcctgcctcaggctcccgag------------tggctgggactacaaacatgcacctccacagccactacttatttttgtaGCaatgtctatcagttggtgaatagagaaacaaagtgtggtatatccttacaataaaatattattcaaccgtaaaaaggaatgaagtactcatacatgctacatgtgtgaaccttggtaatatactagataaaagcagtcaggaaaaaaaggtcacatacgacattatttcatatataagaagtatccaggctgggtgtggtggctca-cgcctgtaatccagcactttgggaggccgaggcaggtggattgcctgagcttaggagtt
i ponAbe2.chr19             C 0 I 1191
s rheMac3.chr19              60054944 556 +  64156825 tttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccacctcggcctcccaaagcgttgggattatgggcatgagtcaccacacctggcctcttttttctttgctgaaaagaaaaggtttgttgcccaggctggagtgcagtggcactatcctagctcactgcagccttgacatcctgactcaagtgatcctcccgcctcaggctcccgagtggctgggactatggctgggactacagacatgcaccaccatagccacgacttatttttgtaGCaatgtctatcagctgatgagtagagaaacaacgtgtggtatatccttacaacaaaatcttattcaaccatacaaaggaatgacacactcacacatgctacacaggtgaaccttgataatatattagatgaaagcagtcaggaaaaaagggtcacatatgacgttatttcatttataagaaatatccaggctgggtgtggtggctca-cgcctgtaatcttgcactttgggaggccgaggcaggtgggttgcctgagtttaggagtt
i rheMac3.chr19             M 651 C 0
s macFas5.chr19              55080276 544 +  59248254 tttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagcgttgggattatgggcatgagccaccacacctggcctcttttttctttgctgaaaagaaaaggtttgttgcccaggctggagtgcagtggctctatcctagctcactgcagccttgacatcctgactcaagtgatcctcccgcctcaggctcccgag------------tggctgggactacagacatgcaccaccatagccacgacttatttttgtaGCaatgtctatcagctgatgagtagagaaacaacgtgtggtatatccttacaacaaaatcttattcaaccacacaaaggaatgacacactcacacatgctacacaggtgaaccttgataatatattagatgaaagcagtcaggaaaaaaaggtcgcatatgacgttatttcatttataagaaatatccaggctgggtgtggtggctca-cgcctgtaatcttgcactttgggaggccgaggcaggtggattgcctgagcttaggagtt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47182462 544 +  51301725 tttcaccatgttggccaggctggtcttgaactcctgacttcagatgatccgcccgcctcagcctcccaaagcgttgggattacaggcgtgagccaccacacctggcctcttttttctttgcttaaaagATAAggtctgctgcccaggctggagtgcagtggcactatcctagctcactgcagccttgacatcctggctcaagtgatcctcccgcctcaggctcccgag------------tggctggggctacagacatgcactaccatAGCCACTACTTATTTTTGTAGCAATGTCTATCAGCTGATGAGTAGAGAAACAACGTGTGGTATATCCTTACAACAAAATCTTATTCAACCATACAAAGGAATGACATACTCACACATGCTACACAGGTGAACCTTGATAATATATTAGATGAAAGCAGTCAGGAAAAAAGGGTCACATATGACgttatttcatttataagaaatatccaggctgggtgtggtggctca-cgcctgtaatcttgcactttgggaggccgaggcaggtggattgcctgagcttaggagtt
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019  10 +  50890351 I

a score=508204.000000
s hg38.chr19_GL949751v2_alt    188105 587 +   1002683 tgagaccagcctgggcaacatggtgaaataccatctctaccaaaaatacaaaaaattcacccggcatggtggcatgtgcctgtgatcccagctacttgggaggctcaggtggcaggatcgcttgagcctgggaggcagaggttacagtgagccgagatcacaccactgcactccaacctgggtgacagagtgagtccctgtctc------aaaaaaaaaaaaaaaaggtattcaaagaaggccaatcgatagaggcagaaagtaggttaattgttgcatgggattaggtgggagtgattgcttgatgtaaactcggtttccttctcggtatgataaaaatgtttcggaatgagatagaggtgatgcttacaccatattgtgaatttactaaatgccacaaaatAGAGTTGTATCTCAATAAAAATATATTTGTTGggccgggtgcggtggctcacgcctataatcccagcactttgggaggcaggcagatcaagaggtcaggagttcaagaccagcctggc---------aaaaccctgtctctactaaaaatataaaacttagccaggcgtggtggcatgtgtctgtaatcccagctactc
s panTro4.chr19              59120636 602 +  63644993 tgagaccagcctgggcaacatggtgaaataccatctctaccaaaaatacaaaaaattcacccggcgtggtggtatgtgcctgtgatcccagctacttgggaggctcaggtggcaggatcgcttgagcctgggaggcagaggttacagtgagccgagatcacaccactgcactccaacctgggtgacagagtgagtccctgtctcaaaaaaaaaaaaaaaaaaaaaaggtattcaaagaaggccaatcgatagaggcagaaagtaggttaattgttgcatgggattaggtgggagtgattgcttaatgtaaactcggtttccttctcagtatgataaaaatgtttcggaatgagatagaggtgatgcttacaccatattgtgaatttactaaatgccacaaaatAGAGTTGTATCTCAATAAAAATATATTTGTTGggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggcaggcggatgaagaggtcaggagttcaagaccagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaacttagccaggcgtggtggcatgtgtctgtaatcccagctactc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60055500 591 +  64156825 agagaccagcctgggcaacatggtgaaataccacctctacc--aaacacaaaaaattcgccaggcatggtggcatgtgcctgtggtcccatctacttgggatgctcaggaggcatgatcacttgagcctgggaggcagaggttacagtgagcagagatcacgccactgtactccaacctgggtgacagagtgaggccctgtctc---------aaaaaaaaaaaaaggtattcaaagaaagccaatcgatagaggcagaaagtaggttaattgttgcatgggattaggtgggagtgattgctgaatgtaaactgggtttccttctcagtatgataaaaatgttttggaatgagatagaggtgatgcttacaacatattgtgaatttactaaatgccaccaaatagtGTTGTATCTCAATAAAAATATATTTGTTGggtcgggtgcggtggctcatgcctataatcccagtgctttgggaggcgggcggatcacgaggtcaggagttcgagaccagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggcatgtgcctgtaatcccagctactc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55080820 592 +  59248254 cgagaccagcctgggcaacatggtgaaataccacctctacc--aaacacaaaaaattcgccaggcatggtggcatgtgcctgtggtcccagctacttgggaggctcaggaggcaggatcacttgagcctgggaggcagaggttacagtgagcagagatcacgccactgtactccaacctgggtgacagagtgagaccctgtctc--------aaaaaaaaaaaaaaggtattcaaagaaagccaatcgatagaggcagaaagtaggttaattgttgcatgggattaggtgggagtgattgctgaatgtaaactgggtttccttctcagtatgataaaaatgttttggaatgagatagaggtgatgcttacaacatattgtgaatttactaaatgccaccaaatagtGTTGTATCTCAATAAAAATATATTTGTTGggtcgggtgcggtggctcatgcctataatcccagtgctttgggaggcgggcggatcacgaggtcaggagttcgagaccagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaaatcagccaggtgtggtggcatgtgcctgtaatcccagctactc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47183006 595 +  51301725 cgagaccagcctgggcaacatggtgaaataccaccTCTACC--AAAcacaaaaaattcgccaggcatggtggcatgtgcctgtggtcccagctacttgggaggctgaggaggcaggatcacttgagcctgggaggcagaggttacagtgagcagagatcacgccactgtactccaacctgagtgacagagtgagaccctgtctc-----aaaaaaaaaaaaaaaaaggtattcaaaGAAAGCCAATcgatagaggcagaaagtaggtTAATTGTTGCATGGGATTAGGTGGGAGTGATTGCTGAATGTAAACTGGGTTTCCTTCTCagtatgataaaaatgttttggaatgaGATAGAGGTGATGCTTACAACATACTGTGAATTTACTAAATGCCACCAAATAGtgttttatctcaataaaaatatatttgttgggtcgggtgcggtggctcatgcctataatcccagtgctttgggaggcgggcggatcacaaggtcaggagttcgagaccagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaaattagccaactgtggtggcgtgtgcctgtaatcccagctactc
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019  10 +  50890351 I

a score=8864.000000
s hg38.chr19_GL949751v2_alt    188692 17 +   1002683 gggaggctgaggtagaA
s panTro4.chr19              59121238 17 +  63644993 gggaggctgaggtagaa
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55081412 17 +  59248254 gggaggctgaggcagga
i macFas5.chr19             C 0 I 10
s papAnu2.chr19              47183601 17 +  51301725 gggaggctgaggcagga
i papAnu2.chr19             C 0 I 10
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019 10 +  50890351 I
e rheMac3.chr19              60056091  0 +  64156825 C

a score=7441.000000
s hg38.chr19_GL949751v2_alt    188709 87 +   1002683 TGGAGCGAGACTCCGTCTCAAAAAAAAatatatatatatgtaaatatatatatgttgggcatagtggtgcacacatgtagtcccagc
s panTro4.chr19              59121255 85 +  63644993 cggagcgagactccgtctc--aaaaaaatatatatatatgtaaatatatatatgttgggcatagtggtgcacacatgtagtcccagc
i panTro4.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019 10 +  50890351 I
e papAnu2.chr19              47183618 10 +  51301725 I
e macFas5.chr19              55081429 10 +  59248254 I
e rheMac3.chr19              60056091  0 +  64156825 C

a score=1083.000000
s hg38.chr19_GL949751v2_alt    188796 5 +   1002683 tactt
s panTro4.chr19              59121340 5 +  63644993 tgctt
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55081439 5 +  59248254 aacct
i macFas5.chr19             I 10 C 0
s papAnu2.chr19              47183628 5 +  51301725 aacct
i papAnu2.chr19             I 10 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019 10 +  50890351 I
e rheMac3.chr19              60056091 0 +  64156825 C

a score=77281.000000
s hg38.chr19_GL949751v2_alt    188801 122 +   1002683 gggaggctgaggcaggagaaccacttgaacctgggaagcggaggttgcagtgagccgagactgcaccattgcactcctgcctgggcaaaaagagtgaaactccatctcgaaaaaaaaaaaaa-------------
s panTro4.chr19              59121345 121 +  63644993 gggaggctgaggcaggagaaccacttgaacctgggaagtggaggttgcagtgagccgagactgcaccattgcactcctgcctgggcaaaaagagtgaaactccatctcg-aaaaaaaaaaaa-------------
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60056091 135 +  64156825 gggaggctgaggcaggagcaccacttgaacctgggaggtggagactgcagtgagccgagattgcaccattgcactcctgcctgggcaacaagagtgaaactccatctcaaaaaaaaaaaaaagaaaagaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55081444 103 +  59248254 --------------------------------gggaggtggagactgcagtgagccgagattgcaccattgcactcctgcctgggcaacaagagtgaaactccatctcaagaaaaaaaaaaagaaaagaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47183633 102 +  51301725 --------------------------------gggaggtggagactgcagtgagccgagattgcaccattgcactcctgcctgggcaacaagagtgaaactccatctcaag-aaaaaaaaaagaaaagaaaaaaa
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102766912 1151 - 106955855 M
e chlSab2.chr6               46887019  10 +  50890351 I

a score=348529.000000
s hg38.chr19_GL949751v2_alt    188923 323 +   1002683 CCACACACACACAC--GTAGATAAAATCAAAT---ATTctgtattccataaatatgtacaattattatttttcaattaaaaaCTCTTAAgctgggcacagtggctcatgcctgtaat------------------------------------------------------------cccaacactttgggaggcggagatgggaggctcttgagcccacaagtttgaggccagtttgggcaacatcgtgagatcccattgctacaaaaaaatttaaaaTATATTTTTAAAAAACTCTAATAcagtagtccccctttatctgtaattttctttctgtgttttcagttacctggtggtcaaccatggtccaaaaatattaaatagaaaa
s panTro4.chr19              59121466 323 +  63644993 CCACACACACACAC--GTAGATAAAATCaaat---attctgtatgccataaatatgtacaattattatttgtcaattaaaaaCTCTTAAgctgggcacagtggctcatgcctgtaat------------------------------------------------------------cccaacactttgggaggcggagatgggaggctcttgagcccacaagtttgaggccagtttgggcaacatcgtgagaccccattgctacaaaaaaatttaaaaTATATTTTTAAAAAACTCTAATAcagtagtccccctttatctgtaattttccttctgtgttttcagttacctggtggtcaaccatggtccaaaaatattaaatagaaaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102768084 326 - 106955855 CCACACACACACACTAGTAGATAAAATCaaataccattctgtatgccataaatatgtacaattattatttgtcaattaaaaa--CTTAAgctgggcacaatggctcatgcctgtaat------------------------------------------------------------cccaacactttgggaggcagagatgggaggctcttgagtccagaagttcgaggccagtttgggcaacatagtgagaccccatctctacaaaaaaaTTTAAAATATATTTTTAAAAAACCCTAATAcagtagtccccctttatctgtaattttctttctgtgttttcggttacctggtggtcaaccatggtccaaaaacattaaatagaaaa
i nomLeu3.chr10             M 1151 C 0
s rheMac3.chr19              60056226 312 +  64156825 CCACACATACACTA--GTAGATAAAGTCAAAT---ATTCtgtaccctataaatatgtacaattattatttgtcaattaaaaaCTCT------------------------------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------------------------------NNNNNNNTgaggccagtttgggcaacatagtgagaccccatctctacaaacaattttaaaatATATTTTTAAAAAACTCTAATAcagtagtccccctttatctgtaattttctttctatgttttcagtaacctggtggccaaccatggtccaaaaatattaaatagaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55081547 323 +  59248254 CCACACATACACTA--GTAGATAAAATCAAAT---ATTctgtaccctgtaaatatgtacaattattatttgtcaattaaaaaCTCTTAAgctgggcacagtggctcatgcctgtaat------------------------------------------------------------cccaacactttgggaggtggagatgggaggctcttgaacccaggagtttgaggccagtttgggcaacatagtgagaccccatctctacaaacaattttaaaatATATTTTTAAAAAACTCTAATAcagtagtccccctttatctgtaattttctttctatgttttcagtaacctggtggccaaccatggtccaaaaatattaaatagaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47183735 323 +  51301725 ccacacatacACTA--GTAGATAAAATCAAAT---ATtctgtaccctataaatatgtacaattattatttgtcaattaaaaactcttaagctgggcacagtggctcatgcctgtaat------------------------------------------------------------cccaacactttgggaggtggagatgggaggctcttgaacccagaagttcgaggccagtttgggcaacatagtgagaccccatctctacaaacaattttaaaatatatttttaaaaaactctaatacagtagtccccctttatctgtaattttctttctatgttttcaGTAACCTGGTGGCCAACCAtgatccaaaaatattaaatagaaaa
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e chlSab2.chr6               46887019  10 +  50890351 I

a score=3437.000000
s hg38.chr19_GL949751v2_alt    189246 5 +   1002683 gttaa
s panTro4.chr19              59121789 5 +  63644993 gttaa
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60056538 5 +  64156825 gttca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55081870 5 +  59248254 gttca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47184058 5 +  51301725 gttCA
i papAnu2.chr19             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102768410 0 - 106955855 C
e chlSab2.chr6               46887019 10 +  50890351 I

a score=8220.000000
s hg38.chr19_GL949751v2_alt    189251 16 +   1002683 ggaatcataagttttt
s rheMac3.chr19              60056543 16 +  64156825 ggaatcgtaagttttt
i rheMac3.chr19             C 0 I 782
s macFas5.chr19              55081875 16 +  59248254 ggaatcgtaagttttt
i macFas5.chr19             C 0 I 23
s papAnu2.chr19              47184063 16 +  51301725 GGAATTGTAAGTTTTT
i papAnu2.chr19             C 0 I 21
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102768410  0 - 106955855 C
e chlSab2.chr6               46887019 10 +  50890351 I
e panTro4.chr19              59121794  0 +  63644993 C

a score=3305.000000
s hg38.chr19_GL949751v2_alt    189267 13 +   1002683 ttttttttttttt
s macFas5.chr19              55081914 13 +  59248254 ttttttttttttt
i macFas5.chr19             I 23 C 0
s papAnu2.chr19              47184100 13 +  51301725 tttcttttttttt
i papAnu2.chr19             I 21 I 304
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102768410  0 - 106955855 C
e chlSab2.chr6               46887019 10 +  50890351 I
e rheMac3.chr19              60056559 782 +  64156825 I
e panTro4.chr19              59121794  0 +  63644993 C

a score=250.000000
s hg38.chr19_GL949751v2_alt    189280 5 +   1002683 attga
s macFas5.chr19              55081927 5 +  59248254 tttga
i macFas5.chr19             C 0 I 289
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102768410 0 - 106955855 C
e chlSab2.chr6               46887019 10 +  50890351 I
e papAnu2.chr19              47184113 304 +  51301725 I
e rheMac3.chr19              60056559 782 +  64156825 I
e panTro4.chr19              59121794 0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    189285 654 +   1002683 tcattcttgggtgtttctcgcagagggggatttggcagggtcataggacaacggtggagggaaggtcagcagataaacaagtgaacaaaggtctctggttttcctaggcagaggaccctgcagccttccgcagtgtttgtgtcactgggtacttgagattagggagtggtgatgactcttaacgagcatgctgccttcaagcatctgttcaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacagggttgggggtaaggtcacagatcaacaggatcccaaggcagaagaatttttcttagtacagaacaaaatgaaaagtctcccatgtctacctctttctacacagacaccgcaaccatccgatttctcaatcttttccccacctttccccgctttctattccacaaaaccgccattgtcatcatggcccgttctcaatgagctgttgggtacacctcccagacggggtggcggccgggcagaggggctcctcacttcccagtaggggcggccgggcagaggcgcccctcacctcccggatggggcggctggcctggcggggggctgacccccccacctccctcccggacggggcggctggccgggcgagggg
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e ponAbe2.chr19              55998972 1191 +  60714840 I
e calJac3.chr22              45468696 1844 +  49145316 I
e nomLeu3.chr10             102768410   0 - 106955855 C
e chlSab2.chr6               46887019  10 +  50890351 I
e papAnu2.chr19              47184113 304 +  51301725 I
e macFas5.chr19              55081932 289 +  59248254 I
e rheMac3.chr19              60056559 782 +  64156825 I
e panTro4.chr19              59121794   0 +  63644993 C

a score=17980.000000
s hg38.chr19_GL949751v2_alt    189939 24 +   1002683 GGAATCATAAGTTTTTAACAAATC
s panTro4.chr19              59121794 24 +  63644993 ggaatcataagttttTgacaaatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000163 24 +  60714840 ggaatcgtaagtttttaaCAAATC
i ponAbe2.chr19             I 1191 C 0
s nomLeu3.chr10             102768410 24 - 106955855 ggaatcataagtttttaaCAAATC
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45470540 22 +  49145316 GGAATCAT--GTTTTTAACAAAAC
i calJac3.chr22             I 1844 I 2
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e chlSab2.chr6               46887019 10 +  50890351 I
e papAnu2.chr19              47184113 304 +  51301725 I
e macFas5.chr19              55081932 289 +  59248254 I
e rheMac3.chr19              60056559 782 +  64156825 I

a score=576319.000000
s hg38.chr19_GL949751v2_alt    189963 407 +   1002683 AAAA-------TATTTCTAAAAA-CCTAGAGTAGGCAGGAAAGG---GGAAACAACACACAGCAGAGGAGA----CAAACAAAAAGGCACACCTGAACAcagtcatgcaccgcataacgatgtttcgctccactacacatttcatatgtgatggtatagcctatgtatgtagtaggttataccacgtaggtttg------tgtaagtagact----ctatgatgttcacacgacgg----tgaattttttttt-ttcttttt--tttgagatggag-tctcattc-tgtctcccaggctggagtgaaatggcacgattttggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcttcccaagtagctgggattacaggcatgcaccacgatgcccggctaatttttgtatttttagtagagaca
s panTro4.chr19              59121818 413 +  63644993 aaaactaaaaatatttctaaaaaacctagaatacgcaggaaagg---ggaaacaacacacagcagaggaga----caaacaaaaaGGCACACCTGAACAcagtcatgcaccgcataacgatgtttcgctccactacacatttcatatgtgatggtatagcctatgtatgcagtaggttataccacgtaggtttg------tgtaagtagact----ctatgatgtttacacgacgg----tgaattttttttt---cttttt--tttgagatggag-tctcattc-tgtctcccaggctggagtgaaatggcacgattttggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcttcccaagtagctgggattacaggcatgcaccacgatgcccggctaatttttgtatttttagtagagaca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000187 411 +  60714840 AAAA--TAAAATATTTCTAAAAAACCTAGAGTAGGCAGGAAAGG---GGAAACAACACACAACAGAGGAG--------ACAAAAAGGCACACCTGAACAcagtcatgtgccacataatgatgtttcggtacactacacatttcatatgtgatggtatagcctatgtatgtagtaggttataccacgtaggtttg------tgtaagtacact----gtatgatgttcacacaatgg----tgagttgtttttt-ttttttttaatttgagatggag-tctcattc-tgtttcccaggctggagtgaaatggcatgattttggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcttcccaagtagctgggactacaggcgcgtgccacgatggccggctaatttttgtatttttactagagaca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102768434 413 - 106955855 AAAA--CAAAATATTTCTAAAAACCCAAGAGTAGGCAGGAAAGGGGAGGAAACAACACACAACAGAGGAG--------ACAAAAAGGCACGCCTGAACAcagtcacgtaccgcataacggtgtttcggtccactacacactgcatatgtgatggtatagcctgtgcatgtagtaggttatagcacgtaggtttg------tgtaaatacact----ctgtgatgttcacacaatgg----tgaattttttttttttcttctt--tttgagatggag-tctcattc-tgtctcccaggctggagtgaaatggcacaattttggctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcttcccaagtagctgggattacaggcatgcaccacgatgcccagctaatttttgtatttttagtagagaca
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55082221 405 +  59248254 -------aaaatatttctaaaaaaccaagagtaggcagcaaagg---ggaaacaacaaaaaacagaggaga----cagacaaaaaGGCAAGCCTGAGCACAATCAGGTGCTGCAGAACGATGTTTCGATCCGCTACACATTGCGTATGTGATGGtacagcctatgtatgtagtaggttataccacgtaagtttgtgtaattgtaagtacact----ctatgatgttcacacaatag----tgaattttttttt-tttttttt--tttgagatggag-tctcactc-tgtctcccaggctggagtgaaatggcacgattttggctcactgcaacctccgcctcccagg---------ttctcctgcctcagcttcccaagtagctgggattacaggtgcgcaccacgatgcctggctaatttttgtatttttagtagagaca
i macFas5.chr19             I 289 C 0
s papAnu2.chr19              47184417 403 +  51301725 -------aaaatatttctaaaaaaccaacagtaggcagcaaagg---ggaaacaacaaaaaacagaggaga----caaacaaaaaggcaaGCCTGAGCACAGTCAGGTGCTGCAGAACGATGTTTCGATCCGCTACACATTGCGTATGTGATGGTACAGCCTATGTATGTAGTAGGTTATACCAcataggtttgtgtaagtgtaagtacact----ctatgatgttcacacaatag----tgaa--ttttttt-tttttttt--tttgagatggag-tctcactc-tgtctcccaggctggagtgaaatggcacgattttggctcactgcaacctccgcctcccagg---------ttctcctgcctcagcttcccaagtagctgggattacaggtgcgcaccacgatgcctggctaatttttgtatttttagtagagaca
i papAnu2.chr19             I 304 C 0
s calJac3.chr22              45470564 406 +  49145316 -------AAAACATTTCTAAAAAACTAAGAGTAAGCAGGAAGTG---GGAATCAGCAAACAACAGAGGAGAGAGGCAAACAAAAAGGCAAGCCTGA-TGCAGTCACGTGCTGCGTAACGGCCTTGCAGTCCGCTACACGTCGCG--TGTGATGACGTAG-CGATGCGCGGACtaggttatatcctgtaggttt-------tgcaagtacgctcgcactatgaggttcgcacagtggtttttgtttttgttttt-gtttttgt--tttgagacagagttttcgctcttgttgcctagac----atgcaatggcatgatctcggctcaatacaacctctacctcccgggttcaa-------tcctgcctccgcttcctgagtagttgggattacaggcatgtgccatgatgcccagctaatttttgtatttttaataaagaca
i calJac3.chr22             I 2 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e chlSab2.chr6               46887019  10 +  50890351 I
e rheMac3.chr19              60056559 782 +  64156825 I

a score=139685.000000
s hg38.chr19_GL949751v2_alt    190370 58 +   1002683 gggtttcaccatgttgagcaggctggtctcgaattcccgacctctggtgatccaccca
s panTro4.chr19              59122231 58 +  63644993 gggtttcaccatgttgagcaggctggtctcgaattcccgacctctggtgatccaccca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000598 58 +  60714840 gggtttcaccatgttgagcaggctggtatcgaattcccgacctctggtgatccaccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102768847 58 - 106955855 gggtttcaccatgttgagcaggctggtctcgaattcccaacctctggtgatccaccca
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55082626 58 +  59248254 gggtttcaccatgttgagcaggctggtctcgacctcctgacctctggtgatccaccca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47184820 58 +  51301725 gggtttcaccatgttgagcaggctggtctcgaactcctgacctctggtgatccaccca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887029 58 +  50890351 gggtttcaccatgttgaacaggctggtctcgaactcctgacctctggtgatccaccca
i chlSab2.chr6              I 10 C 0
s calJac3.chr22              45470970 58 +  49145316 gggtttcaccatgttggccaggctggtcctgaactcctgacctctggtgatttgcccg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e rheMac3.chr19              60056559 782 +  64156825 I

a score=447156.000000
s hg38.chr19_GL949751v2_alt    190428 173 +   1002683 tcttggcctcccaaagttctgggattacaggcatgagccaccacgcct------ggccaaaattttttaatgatggctttctcagaacatatccctgtcattaagtgacatacggttgTAATGTCATCAGTGATTACATTAAATATAAGTGATCAAAAAGAGATTACAAGATTGGAAtt
s panTro4.chr19              59122289 173 +  63644993 tcttggcctcctaaagttctgggattacaggcgtgagccaccacgcct------ggccgaaattttttaatgatggttttctcagaacatatccctgtcattaagtgacatacgattgTAATGTCATCAGTGATTACATTAAATATAAGTGATCAAAAAGAGATTACAAGATTGGAAtt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000656 168 +  60714840 tcttggcctcccaaagttctggg-----aggcatgagccaccacgccc------ggccaaaattttttaatgatggatttctcagaacatatccctgtcattaagtgacatacaattgTAATGTCATCAGTGATTACATTAAATATAAGTGATCAAAAAGAGATTACAAGATTGGAttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102768905 173 - 106955855 tcttggcctcccaaagttctgggattacaggcatgagccaccacgccc------ggccaaaattttttaatgatggatttctcagaatatatccctgttattaagtgacatacaattgTAATGTCATCAGTGATTACATTAAATATAAGTGATCAAAAAGAGATTACAAGATTGGAttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60057341 169 +  64156825 Tcttggcctcccaaagttctgggattacaggagtgagccatcatgccc------agccaaaattttttaatgatgga-ttctcagaacatatccctgtcattcagtgacacatgattgTAATGCCATCAGTGATTACATTAAATATAAGTGATCTAAAAGAGATTACAAGATTGGA---
i rheMac3.chr19             I 782 C 0
s macFas5.chr19              55082684 169 +  59248254 tcttggcctcccaaagttctgggattacaggagtgagccatcatgccc------agccaaaattttttaatgatgga-ttctcagaacatatccctgtcattcagtgacacatgattgTAATGCCATCAGTGATTACATTAAATATAAGTGATCTAAAAGAGATTACAAGATTGGA---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47184878 169 +  51301725 tcttggcctcccaaagttctggaattacaggagtgagccatcataccc------agccaaaattttttaatgatgga-ttctcagaacatatccctgtcattCAGTGACACACAATTGTAATGCCATCAgtgattacattaaatataagtgATCTAAAAGAGATTACaagattgga---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887087 169 +  50890351 tcttggcctcccaaagttctgggattacaggagtgagccatcatgccc------agccaaaattttttaatgatgga-ttctcagaacatatccctgtcattcagtgacacatgattgTAATGCCATCAGTGATTACATTAAATATAAGTGACCTAAAAGAGATTACAAGATTGGA---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45471028 163 +  49145316 tctccgcctctcaaagtgctgggattaccggcgtgagccaccgcgcccggccatggccaacactttttaaagatggatttctcagaacatatgcccgtcattaagtgacatgaa----------cgtaagtgat----ctaaatac-agcaat-tgaaagagattacaagattggattt
i calJac3.chr22             C 0 I 142
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T

a score=76016.000000
s hg38.chr19_GL949751v2_alt    190601 38 +   1002683 tttttttttt---gagacagagtcttgctc-tgttgcccagg
s panTro4.chr19              59122462 40 +  63644993 tttttttttt-ttgagacagagtcttgctc-tgttgcccagg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000824 41 +  60714840 tttttttttttttgagacagagtcttgctc-tgttacccagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102769078 40 - 106955855 tttttttttt-ttgagacagagtcttgctc-tgttgcccaag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60057510 39 +  64156825 --TTTTTTTT-TTGAGATGGAGTTTCGCTCTTGTTGCCCAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55082853 39 +  59248254 --tttttttt-ttgagatggagtttcgctcttgttgcccagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185047 39 +  51301725 --tttttttt-ttgagatggagttttgctcttgttgcccagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887256 38 +  50890351 ---ttttttt-ttgagatggagttttgctcttgttgcccagg
i chlSab2.chr6              C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e calJac3.chr22              45471191 142 +  49145316 I

a score=31453.000000
s hg38.chr19_GL949751v2_alt    190639 11 +   1002683 ctgtagtgcag
s panTro4.chr19              59122502 11 +  63644993 ctgtagtgtag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000865 11 +  60714840 ctgtagtgcag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102769118 11 - 106955855 ctggagtgcag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60057549 11 +  64156825 CTGGAGTGCAG
i rheMac3.chr19             C 0 I 2778
s macFas5.chr19              55082892 11 +  59248254 ctggagtgcag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185086 11 +  51301725 ctggagtgcag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887294 11 +  50890351 ctggagtgcaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45471333 11 +  49145316 ctgcagtgcag
i calJac3.chr22             I 142 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T

a score=222255.000000
s hg38.chr19_GL949751v2_alt    190650 104 +   1002683 tggtgtgatctcggttcactgcaaccactgcctcctgggttcaagcagttctctgcctcagcctccctagtagctgggattacaggtgcctgccaccacacctg
s panTro4.chr19              59122513 104 +  63644993 tggtgtgatctcggttcactgcaacctctgcctcctgggttcaagcagttctctgcctcagcctccctagtagctgggattacaggtgcctgccaccacacctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000876 104 +  60714840 tggtgtgatcttggttcactgcaacccctgcctcccaggttcaagcaattctctgcctcagcctcccaagtagccgggattacaggcgcctgccaccacgccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102769129 104 - 106955855 tggtgtgatctcggctcactgcaacctctgcctcccgggttcaagcagttctctgcgtcagcctccctagtagctgggattacaggcgtctgccaccaggcctg
i nomLeu3.chr10             C 0 I 1977
s macFas5.chr19              55082903 104 +  59248254 tggtgtgatcttggctcactacagcctctgcctcccgggttcaagcaattctctgcctcagcatcctgagtagctgggattacaggtgccggccaccacacccg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185097 104 +  51301725 tggtatgatcttggctcactacaacctctgcctcccgggttcaagcaattgtctgcctcagcatcccgagtagctgggattacaggcgcctgccaccacaccgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887305 104 +  50890351 tggtatgatcttggctcactacaacctctgcctcctgggttcaagcaattgtctgcctcagcatcccgagtagctgggattacaggcgcctgccaccacaccgg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45471344 101 +  49145316 tggcgccatctcggctcaccgcaacctctgtctcc-ggggtcaagcaattctctgcctc--cctccccagtagctgggattatagacatctgccaccacacctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e rheMac3.chr19              60057560 2778 +  64156825 I

a score=171433.000000
s hg38.chr19_GL949751v2_alt    190754 73 +   1002683 gccagtttttgtatttttagtagagatggggtttcaccatcttggccaggctagtcttgaactcctgaccttg
s panTro4.chr19              59122617 73 +  63644993 gccaatttttgtatttttagtagagacggggtttcaccatcttggccaggctagtcttgaactcctgaccttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56000980 73 +  60714840 gccaatttttgtatttttagtagagatggggtttcaccatcttggccaggctagtcttgaactcctgaccttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771210 73 - 106955855 gccaatttttgtatttttagtagagacggggtttcagcattttggccaggctagtcttgaactccttgacttg
i nomLeu3.chr10             I 1977 C 0
s macFas5.chr19              55083007 73 +  59248254 gctaatttttgtatttttagtagggacggggtttcaccatcttggccagactagtcttgaactcctgaccttg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185201 73 +  51301725 gctaatttttgtatttttagtagagacggggtttcaccatcctggccagactagtcttgaactcctgaccttg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887409 73 +  50890351 gctaatttttgtatttttagtagagacggggtttcaccatcttggccagactagtcctgaactcctgaccttg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45471445 73 +  49145316 gctaatttctgtatttttagtagagacagggtttcaccatcttgggcaggctggtcttgcactcctgacctca
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e rheMac3.chr19              60057560 2778 +  64156825 I

a score=847624.000000
s hg38.chr19_GL949751v2_alt    190827 292 +   1002683 tgatccacccgccttggcctcccaaagtgctgggattacaggcatgaacccccgcgcctggccTGTTGTTTATATTTTATCACATTAAAAAAGCAGAAGGATGAAAAATGTATTATGCAAACACTAATCAACAGATAATTTCACTGGCTTGTTAGttgttttg------tttttttgagacagggtctc------gtccaggctgaagtgctgtggtgcgatctcggctcattgcagcctcgacctcctgtaccca-agtgatcctcccacctcagcctctc-aagta-gctgggactacaggtgtg
s panTro4.chr19              59122690 292 +  63644993 tgatccacccgccttggcctcccaaagtgctgggattacaggcatgagcccccgcgcctggccTGTTGTTTATATTTTATCACATTAAAAAAGCAGAAGGATGAAAAATGTATTATGCAAACACTAATCAACAGATAATTTCACTGGCTTGTTAGttgttttg------ttgttttgagacagggtctc------atccaggctgaagtgctgtggtgcgatctcggctcattgcagcctcgacctcctgtaccca-agtgatcctcccacctcagcctctc-aagta-gctgggactacaggtgtg
i panTro4.chr19             C 0 I 10
s ponAbe2.chr19              56001053 298 +  60714840 tgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagtccccgtgcctggccTGTTGTTTATATTTTATCACATTAAAAAACCAGAAGGATGAAAAATGTATTATGCAAACACTAATCAACAGATAATTTCACTGGCTTGTTAGttgttttg------tttttttgagacagggtctcactgttgtccaggctgaagtgctgtggtgcggtcttggctcactgcagcctcgacctcctgtaccca-agtgatcctcccatctcagcctctc-aagta-gctgtgactacaggtgtt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771283 298 - 106955855 tgatctacccgcctcagcctaccaaagtgctgggattacaggcatgagcccctgcgcctggccTGTTGTTTATATTTTATAACATTAAAAAAGCAGAAGGATGAAAAATGTATTATGCAAACACTAATCAACAGATAATTTCACTGTCTTGTTAGttgttttg------tttttttgagacagtgtctcactgttgtccaggctgaagtgctgtggtgtgatcttggctcaccgcagcctcaacctcctgtaccca-agtgatcctcccacctcagcctctc-aagta-gctgggactacaggtgtg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60060338 305 +  64156825 tgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTGTTGTTTATATTTTATCACATTAAAAAAGCAGACGGATGAAAAATGTATTATGCAAACACTAATCAACAGGTAATTTCACTGGCCttttaattgttttggtttattttttttgagacagggtctcactgttgctcaggctgaagtgctgaggtaccatcttggctcactgcagcctcgacctcctgtgcccaaagtgattctcccgcctcagcctctc-aagta-gctggcactacaggtgtg
i rheMac3.chr19             I 2778 C 0
s macFas5.chr19              55083080 305 +  59248254 tgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTGTTGTTTATATTTTATCACATTAAAAAAGCAGACGGATGAAAAATGTATTATGCAAACACTAATCAACAGGTAATTTCACTGGCCttttaattgttttggtttattttttttgagacagggtctcactgttgctcaggctgaagtgctgaggtaccatcttggctcactgcagcctcgacctcctgtgcccaaagtgattctcccgcctcagcctctc-aagta-gctggcactacaggtgtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185274 305 +  51301725 tgatccaccctcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggcctgttgtttatattttatcacattaAAAAAGCAGACGGATGAAAAATGTATTATGCAAACACTAATCAACAGGTAATTTCACTGGCCTTTTaattgttttggtttattttttttgagacagggtctcactgttgctcaggctgaagtgctgtggtaccatcttggctcactgcagcctcgacctcctgtgcccaaagtgattctcccgcctcagcctctc-aagta-gctggcactacaggtgtg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887482 305 +  50890351 tgatccaccctcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTGTTGTTTATATTTTATCACATTAAAAAAGCAGACGGATGAAAAATGTATTATGCAAACACTAATCAACAGGTAATTTCACTGGCCttttaattgttttggtttattttttttgagacagggtctcactgttgctcaggctgaagtgctgtggtaccatcttggctcactgcagccttgacctcctgtgcccacagtgattctcccgcctcagcctctc-aagta-gctgggactacaggcgtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45471518 297 +  49145316 tgatccgcctgccttggcctcccaaagtgctgggattgcaggtgtg-gccaccacccctggcattttatttata-tTTATCACATTAAAAAAACCGAAGGTTGAAAAATGTATTATGCAAACACGAATCAACAGATAATTTCACTGGAtttttagtt-ttctg------atttttttagacagggtctcactgttgcccaggctggagagctgtggtgtgatcttggctcactgcagcctcgacctcctgtgccca-agtgatcctcccacctcagcctccctaagtgcgctggggctacaggtgtg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T

a score=49923.000000
s hg38.chr19_GL949751v2_alt    191119 22 +   1002683 tgccaccacgccggactggttt
s ponAbe2.chr19              56001351 22 +  60714840 tgccaccgtgccagactggttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771581 22 - 106955855 tgccaccacgccggactggttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60060643 22 +  64156825 tgccgccatgccggactagttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55083385 22 +  59248254 tgccgccatgccggactagttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185579 22 +  51301725 tgccgccatgccggactagttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887787 22 +  50890351 tgccgccatgccggactagttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45471815 22 +  49145316 tgccaccatgcctgactagctt
i calJac3.chr22             C 0 I 39969
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e panTro4.chr19              59122982 10 +  63644993 I

a score=125832.000000
s hg38.chr19_GL949751v2_alt    191141 66 +   1002683 tattttttgtagagatggggcctcacaatgctgatctgactga-ctcgaactcctgagctcaagcta
s ponAbe2.chr19              56001373 66 +  60714840 tattttttgtagagatggggtctcactattctgctccgactga-cttgaactcctgagctcaagcca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771603 66 - 106955855 tattttttgtagagatggggtctcactatgctgctccgactga-ctcgaactcctgagctcaagcca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60060665 66 +  64156825 tattttttgtagagatggggtctcactatgctgttcagactga-ctcgaactaccgagctcgagcca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55083407 66 +  59248254 tattttttgtagagatggggtctcactatgctgttcagactga-ctcgaactcccgagctcgagcca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185601 65 +  51301725 ta-tttttgtagagatggggtctcactatgctgttcAGACTGA-CTTGAACTGCCGAGCGCGAGCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887809 66 +  50890351 tattttttgtggagatggggtctcactatgctgttcagactga-ctcgaactcccgagctcgagcca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45511806 65 +  49145316 tatttttagtagagacagggtttcaccatcttgggcaggctggtcttgcactcctgacctcatga--
i calJac3.chr22             I 39969 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e panTro4.chr19              59122982 10 +  63644993 I

a score=164320.000000
s hg38.chr19_GL949751v2_alt    191207 59 +   1002683 tcctccccacttgccctcccaaagtattgggattacaggtgtgagccactgcacctggT
s panTro4.chr19              59122992 59 +  63644993 tcctccccacttgccctcccaaagtattgggattacaggtgtgagccactgcacctggT
i panTro4.chr19             I 10 C 0
s ponAbe2.chr19              56001439 59 +  60714840 tcctccccacttgccctcccaaagtattgggattacaggcatgagccactgcacctggT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771669 59 - 106955855 tcctccccacttgccctcccaaagtactgggattacaggcgtgagccactgtacctggT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60060731 59 +  64156825 tcctccccgcttgccctcccaaagtattgggattacagatgtgagccactgcacctggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55083473 59 +  59248254 tcctccccacttaccctcccaaagtactgggattacagacgtgagccactgcacctggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185666 59 +  51301725 CCCTCCCCACTGaccctcccaaagtattgggattacagacgtgagccactgcacctggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887875 59 +  50890351 ccctccccacttaccctcccaaagtattgggattacagacgtgagccactgcacctggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45511871 57 +  49145316 tccgcctgccttggcctcccaaagtgctgggattgcaggtgtg-gccaccacccctgg-
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T

a score=7890.000000
s hg38.chr19_GL949751v2_alt    191266 9 +   1002683 TATGCTTCT
s panTro4.chr19              59123051 9 +  63644993 TATGCTTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56001498 9 +  60714840 TATGCttct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771728 9 - 106955855 TATGCTTCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60060790 9 +  64156825 TATGCTTCT
i rheMac3.chr19             C 0 C 0
s calJac3.chr22              45511928 5 +  49145316 ----cattt
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e chlSab2.chr6               46887934 0 +  50890351 C
e papAnu2.chr19              47185725 0 +  51301725 C
e macFas5.chr19              55083532 0 +  59248254 C

a score=61277.000000
s hg38.chr19_GL949751v2_alt    191275 121 +   1002683 --TTTTTAtt------------------------------------------------------------ttttttct---ttctttttttttt--tttttcgagacggaatctcactctgtcgcccaggctggagtgcagtggtgcgatctcagctcactgcaagctctgcctcccgggctcatgcc
s panTro4.chr19              59123060 121 +  63644993 --TTTTTAtt------------------------------------------------------------atttttct---ttctttctttttt--ttttccgagacggaatctcactctgtcgcccaggctggagtgcagtggtgcgatctcagctcactgcaagctctgcctcccgggctcacacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56001507 112 +  60714840 --tttttatt-------------------------------------------------------------tttttct---ttctttttttt----------gagatggaatctcactctgttgcccaggccggagtccagtggtgcgatcttggctcactgcaagctccgcctcccgggttcacacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771737 128 - 106955855 --TTTTTATTTTTTtc-----------------------------------------------------tttctttct---ttctttttttttt--ttttttgagacagaatcacactctgccacccaggctggagtgcagtggcgtgatctcagctcactgcaagctctgcctcccgggctcacgcc
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45511933 186 +  49145316 tatttatatTTATCACATTAAAAAAACCGAAGGTTGAAAAATGTATTATGCAAACACGAATCAACAGATAATTTCACTGGAtttttagttttctgatttttttagacagggtctca--ctgttgcccaggctggagagctgtggtgtgatcttggctcactgcagcctcgacctcctgtgcccaagtg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3716911 4822 + 145441459 T
e canFam3.chr1              103003719 5795 + 122678785 T
e chlSab2.chr6               46887934   0 +  50890351 C
e papAnu2.chr19              47185725   0 +  51301725 C
e macFas5.chr19              55083532   0 +  59248254 C
e rheMac3.chr19              60060799   0 +  64156825 C

a score=150522.000000
s hg38.chr19_GL949751v2_alt    191396 200 +   1002683 attctcctgcctcagcctcctgagtagctgggactataggcactcgccaccacgcccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcc-------------------------tgacctcatg--atccgcccgcat---cagcctcccaaagtgctgagattataggcgtgagccaccgcgcccggccTATT
s panTro4.chr19              59123181 200 +  63644993 attctcctgcctcaacttcctgagtagctgggactataggcacccgccaccacgcccggctaatttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcc-------------------------tgacctcgtg--atccgcccgcct---cggcctcccaaagtgctgagattataggcgtgagccaccgcgcccggccTATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56001619 200 +  60714840 attctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcctggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtgtcgatctcc-------------------------cgacctcatg--atccgcccacct---cggcctcccaaagtgctgagattacaggcgtgagccaccgcgcccggccTGGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102771865 200 - 106955855 attctcctgcctcagcctcccgagtagctgggactataggtgcccgccaccacgcccagctaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcc-------------------------tgacctcatg--atccgcccgcct---cggcctcccaaagtgctgagattataggcatgagccaccgcgcccggccTATT
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45512119 191 +  49145316 atcctcccacctcagcctcccaagtcgctggggctacaggtgtgtgccaccatgcctgactagctt-----tactttctggagaggttgggtctcacgatgctgctcaggctggctgcaa-ctcc-------------------------tgagctcaagccatcctccccact---tgccctcccgaagtgttgggattacaggcgtgagccactgtacctggT-----
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3712089 210 + 145441459 atttgcctggctctacctccttagtt-ctgagatggaaggcatgcaattccaagcttggcCTATtgatt--catttttagaaagggtctagt------gtgtt--ccaggctggcctcttactcctaggctatgtagctgaaaatgaccttgacctcttg--accctccctcctttccactcctctaaaatgctgggatttcaggtgtgttctac----cCTGGCCT---
i mm10.chr7                 T 4822 C 0
e canFam3.chr1              103003719 5795 + 122678785 T
e chlSab2.chr6               46887934   0 +  50890351 C
e papAnu2.chr19              47185725   0 +  51301725 C
e macFas5.chr19              55083532   0 +  59248254 C
e rheMac3.chr19              60060799   0 +  64156825 C

a score=21980.000000
s hg38.chr19_GL949751v2_alt    191596 9 +   1002683 TATGCTTCT
s panTro4.chr19              59123381 9 +  63644993 TATGCTTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56001819 9 +  60714840 TATGCTTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102772065 9 - 106955855 TATGCTTCT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55083532 9 +  59248254 TATGCTTCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185725 9 +  51301725 tatgcTTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887934 9 +  50890351 TATGCTTCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45512310 9 +  49145316 TACGCCTCT
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3712299 0 + 145441459 C
e canFam3.chr1              103003719 5795 + 122678785 T
e rheMac3.chr19              60060799 0 +  64156825 C

a score=566480.000000
s hg38.chr19_GL949751v2_alt    191605 217 +   1002683 TAATTTTCCCATGTCATAAGTTCGATGTATAATATTTACATTATCATTCAGTTTAAAACATTCACT--------------Gttt-ttttttttagagacaaggtctcgctctgtcacacaggctggagtgcagtggcacagtcatagctcactgcagcctcagcagccttaacttcttgtgttcaaggaatcctccccactcagcctcctgagtaccacacccg-----------------gcctttac
s panTro4.chr19              59123390 216 +  63644993 TAATTTTCCCATGTCGTAAGTTCGATGTATAATATTTACATTATCATTCAGTTTAAAACATTCACt---------------ctt-ttttttttagagacaagttctcgctctgtcacacaggctggagtgcagtggcacagtcatagctcactgcagcctcagcagccttaacttcttatgttcaaggaatcctccccactcagcctcctgagtaCCACACCCG-----------------GCCTTTAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56001828 229 +  60714840 TAAGTTTCCcatttcataagtttgatgtgtaatatttacattatcattcaatttaaaacattCACTCACtcttttttttttttt-ttttttttagagacaaggtcttgctctgtcacacaggctggagtgcagtggcacagtc--agctcactgcagcctcagcagccttaacttcttgtgttcaaggaatcctccccactcagcctcccgagtaCCACACCCG-----------------GCCTTTAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102772074 218 - 106955855 TAATTTTCCcatttcgtaagtttgatgtgtaatatttacattatcattcagtttaaaacattCACT-------------CAtct-ttttttttagagacaaggtctcgctctgtcccataggctggagtgcagtggcacagtcatagctcactgcagcctcagcagccttaacttcttgtgctcaaggaatcctccctactcagcctcctgagtaCCACACCCG-----------------GCCTTTAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60060799 210 +  64156825 TAATTTTCCCATTTCGTAAGTTCGATGTGTAATATTGACATTATCATTGAATTTAAAACATTCACT-------------CACtc-tttttttt--------ggtctccctctgtcacacaggctggagtgcagtggcacagtcatagctcactgcagcctcggcagcctgaacctcttgtgttcaaggaaacctcccgactcggcctcccgagtaCCACACCTG-----------------GCCTTTAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55083541 210 +  59248254 TAATTTTCCCATTTCGTAAGTTCGATGTGTAATATTGACATTATCATTGAATTTAAAACATTCACT-------------CACtc-tttttttt--------ggtctccctctgtcacacaggctggagtgcagtggcacagtcatagctcactgcagcctcggcagcctgaacctcttgtgttcaaggaatcctcccgactcagcttcccgagtaCCACACCTG-----------------GCCTTTAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47185734 211 +  51301725 TAATTTTCCCATTTCATAAGTTCGATGTGTAATATTGACATTATCATTGAATTTAAAACATtcact-------------cactcttttttttt--------tgtctccctctgtcacacaggctggagtgcagtggcacagtcatagctcactgcagcctcggcagCCTGAACCTCTTgtgttcaaggaatcctcccgactcagcctcccgagtgccacacctg-----------------gcctttac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46887943 211 +  50890351 TAATTTTCCCATTTCATAAGTTCGATGTGTAATATTGACATTATCATTGAATTTAAAACATTCACT-------------CACtcttttttttt--------tgtctccctctgtcacacaggctggagtgcagtggcacagtcatagctcactgcagcctcggcagcctgaacctcttgtgttcaaggaatcctcccgactcagcctcccgagtGCCACACCTG-----------------GCCTTTAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45512319 215 +  49145316 TAATTTTCCCATTTTGTAAGTTGGATGTGGAATATTGACATTATCATTCAATTAAAAACATTCACt----------------ct-tttttttaagagacaaggtctcgatctatcacacaggctggagtgcagcggcagagtcatggctcactgcagcctcagcatccttaacctcttgggttcaaggcattctcccgactcagcctcccaagtGCCACAACTG-----------------GCCTTTAT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3712299 139 + 145441459 ---------------------TTGGTGGCTAAT-----------------GTTTAAAAca------------------------------------------------ctctgtagcccaggttggcatgaaattcactag--atgactcaccatggccaca----------------------aaacaaattcccctcgtcagcctcctgtgggttggaattgtggggctgtgcaacagtgcctgTAA
i mm10.chr7                 C 0 C 0
e canFam3.chr1              103003719 5795 + 122678785 T

a score=220687.000000
s hg38.chr19_GL949751v2_alt    191822  80 +   1002683 gtctgtttttgtttt--------------------------------------------------------ttgtTTTTTTGTTATT-AACTCA-TTGATTGTTGAGAAGTCTGTTGCTTT-ATTTCCAAAATGGGACG
s panTro4.chr19              59123606  77 +  63644993 GTCTGTTTTTTTTTT--------------------------------------------------------TT---TTTTTGTTATT-AACTCA-TTGATTGTTGAGAAGTCTGTTGCTTT-ATTTCCAAAATGGGACG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002057  78 +  60714840 GTCTGTGTTTTTTTT--------------------------------------------------------TT--ttttttcttatt-aactca-ttgattattgagaagtctgttgcttt-atttccaaaatgcgacg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102772292  78 - 106955855 GTCTGTGTGTTTTTT--------------------------------------------------------TT--TTTTTTCTTATT-AACTCA-GTGATTATTGAGAAGTCTGTTGCTTT-ATTTCCAAAATGCGACG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60061009  73 +  64156825 GTCGG-----TTTTT--------------------------------------------------------TT--ttttttcttatt-aactca-ttaattattgagaagtctgttgcttt-atttccaaaatgcgacg
i rheMac3.chr19             C 0 I 308
s macFas5.chr19              55083751  74 +  59248254 GTCGG----TTTTTT--------------------------------------------------------TT--TTTTTTCTTATT-AACTCA-TTAATTATTGAGAAGTCTGTTGCTTT-ATTTCCAAAATGCGACG
i macFas5.chr19             C 0 I 314
s papAnu2.chr19              47185945  78 +  51301725 gtctgtttttttttt--------------------------------------------------------tt--ttttttcttatt-aactcA-TTGATTATTGAGAAGTCTGTTGCTTT-ATTTCCAAAATGCGACG
i papAnu2.chr19             C 0 I 315
s chlSab2.chr6               46888154  73 +  50890351 GTCTG-----TTTTT--------------------------------------------------------TT--ttttttcttatt-aactca-ttgattattgagaagtctgttgcttt-atttccaaaatgcgatg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45512534  71 +  49145316 GTCTG-------TTT--------------------------------------------------------TT--ttttttcttatt-gactca-ctgattattgagaggtctgctgcttt-atttccaaaatgcgagg
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3712438 129 + 145441459 ATTTTCTCATTTCCTAGCTTTGTTGAGAAATATCATTAAAGTTAGCACTCAATGTAAAACCTTCCCTTCCATT--TCATTTCTCATT----TCACTTGATTATTGAGAAATCTCTAGCTTT-ATTTCCAAACTCTG---
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19700859  79 - 122678785 gtctc-atttccatt--------------------------------------------------------tt--ggttttctcattaaattcc-tggattattgagaagtccactgctttaatttccatagtgtaggg
i canFam3.chr1              T 23254 C 0

a score=533092.000000
s hg38.chr19_GL949751v2_alt    191902 156 +   1002683 ATATTAGTCATCTTTGAG-------TCAGGTGAGTCCCACAAGTTCCCAGCGTCTCCTCATGGTCTGTGTTAGGGGTCCAGGCTGACTGGGGTTCACTG----GTGTCCACTGGGGGCAGCTCCCGTGCCTTCAGCAGTCCTGAGTCTCCTTCTGCTGAGTGTGGGG
s panTro4.chr19              59123683 156 +  63644993 ATATTAGTCATCTTTGAG-------TCAGGTGAGTCCCACAAGTTCCCAGCGTCTCCTCATGGTCTGTGTTAGGGGTCCAGGCTGGCTGGGGTTCACTG----GTGTCCACTGTGGGCAGCTCCCGTGCCTTCAGCAGTCCTGAGTCTCCTTCTGCTGAGTGTGGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002135 156 +  60714840 atattagtcatctttGAG-------TCAGGTGAGTCCCACAAGTTCCCATCGTCTCCTCGTGGTCTGTGTTAGGGGTCCAGGCTGACTGGGGTTCATTG----GTGTCCACTGGGGGCAGCTCCTGTGCCTTCAGCAGTCCTGAGTCTCCTTCTGCTGAATGTAGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102772370 154 - 106955855 ATATTAGTCATCTTTGAG-------TCAGGTGAGTCCCACAAGTTCCCAGCGTATCCTCGTGGTC--TGTTAGGGGTCCAGGCTGACTGGGGTTCATTG----GTGTCCACTGGGGGCAGTTCCCGTGCCTTCAGCAGTCCTGAGTCTCCTTCTCCTGAGTGTGGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60061390 153 +  64156825 atattagtcatctttGAG-------TCAGGTGAGTCCCACAAGTTCCCAGCGTCTCCTCGTGGTCTGTGTTAGGGGTCCAGGCTGACTGGGGTTCACTG----GTGTCCACTGGGGGCAGCTCTCGTGCCTTCAGCAGTCCCGAGTCTC---CTGCTGAGTGTGGGG
i rheMac3.chr19             I 308 C 0
s macFas5.chr19              55084139 153 +  59248254 ATATTAGTCATCTTTGAG-------TCAGGTGAGTCCCACAAGTTCCCAGCGTCTCCTCGTGGTCTGTGTTAGGGGTCCAGGCCGACTGGGGTTCACTG----GTGTCCACTGGGGGCAGCTCCCGTGCCTTCAGCAGTCCCGAGTCTC---CTGCTGAGTGTGGGG
i macFas5.chr19             I 314 C 0
s papAnu2.chr19              47186338 156 +  51301725 atattaGTCATCTTTGAG-------TCAGGTGAGTCCCACAAGTTCCCAGCGTCTCCTCGTGGTCTGTGTTAGGGGTCCAGGCTGACTGGGGTTCACTG----GTGTCCACTGGGGGCAGCTCCCGTGCCTTCAGCAGTCCCGAGTCTCCTTCTGCTGAGTGTGGGG
i papAnu2.chr19             I 315 I 31878
s chlSab2.chr6               46888227 156 +  50890351 atattagtcatctttGAG-------TCAGGTGAGTCCCACAAGTTCCCAGTGTCTCCTCGTGGTCTGTGTTAGGGGTCCAGGCTGTCTGAGGTTCATTG----GTGTCCACTGGGGGCAGCTCCCGTGCCTTCAGCAGTCCTGAGTCTCCTTCTGCTGAGTGTGGGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45512605 148 +  49145316 atattagtcatctttGAG-------TCAGGTGAGTCCCACAAGTTCCCAGTGCCTCCTGGTGGTCTGTGTTAAGGGTCCAGGCTGGCTGGGGTCTATTG----GTGTCCACTGGGGGCAGCTCCCATGTCTT--------CTGAGTGTCCTTCTGTTGAGTGTGGGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3712567 126 + 145441459 ATGTTACTTAAAGTGCAG-------TCACGT---TTCCAAAAGTTCCCAGAGTCCCTTGGAGGTCTCTGCTAGGCATCCTGGCAGGCAGGGGGTCATTGCTCCATGTCC-TTGGGAACAGCCTCTGGAC---GAGCAGCC---------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19700938 137 - 122678785 atattagctatctttGAGGGCAGAATTGGGTGACTTGCAAAGGGTCCCAGGAGTTACTAGTGGTCTGTGTGAGGAGTCCAGGCTGGCTGG-------TA----GCACCCACTATGGGCAGGTCCTGTGCCTTC------CTTGGGTC-------------CGTGGGG
i canFam3.chr1              C 0 C 0

a score=797111.000000
s hg38.chr19_GL949751v2_alt    192058 203 +   1002683 TCTGCGTACCCCCC-GGGCTAGTGGATGGCCAGAGTGGCGTAGATGCTGGGCTCAGCTGGAGGTTCCCCTTCCTGGGATGGAGGAGGCTCAGTTGCCTTCCGTCTAAGGGTCAAGCTGTGCAGCTGGGCGTAGGTCACATCCTGGGAGGCTTCAGATGCAGCAGCCTGCAGCGGGGGAGAGTGAGAGGTAAGGAACGTGGTGGG
s panTro4.chr19              59123839 203 +  63644993 TCTGCGTGCCCCCC-GGGCTAGTGGATGGCCAGAGTGGCGTAGATGCTGGGCTCAGCTGGAGGTTCCCCTTCCTGGGATGGAGGAGGCTCAGTTGCCTTCTGTCTAAGGGTCAAGCTGTGCAGCTGGGCGTAGGTCACATCCTGGGGGGCTTCAGATGCAGCAGCCTGCAGCGGGGGAGAGTGAGAGGGAAGGAACGTGGTGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002291 204 +  60714840 TCTGTGTCCCCCCCTGGGCTAGTGGATGGCCAGGGTGGCGTAGACGCTGGCCTCAGCTGGAGGTTCCCGTTCCTGGGATGGAGGAGGCTCAGTTGCCTCCCGTCTGAGGGTCAAGCTGTGCAGCTGGGCGTAGGTCACATCCTGGGGGGCTTCAGATGCAGCAGCCTGCAGTGGGGGAGAGTGAGAGGGAAGGAACGTGGTGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102772524 203 - 106955855 TCTGGGTCCCCTCT-GGGCTAATGGATGGCCAGTGTGGCATAGATGCTGGGCTCAGCTGGAGGTTCCCCTTCCTGGGATGGAGGAGGCTCAGTTGCCGTCCGTCTGAGGGTCAAGCTGTGCAGCTGGGCGTAGGTCACATCCTGGGGGGCTTCAGATGCAGCAGCCTGCAGTGGGGGAGAGTGAGAGGGAAGGAACGTGGTGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60061543 203 +  64156825 TCTGGGTCCCCACC-GGGTTAGTGGATGGCCAGGGTGGCGTAGACGCTGGGCTCAGCTGGAGGTTCCCCTTCCTGGGTTGGAGGAGGCTCAGTTGCCTCCCGTCTGAGGGTCAAGCTCTGCAGCTGGGCATAGGTCACATCCTGGGGGTCTTCAGATGCAGCAGCCTGCAGTGGGGGAGAGTGAGAGGGAAGGAACGTGGTGGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55084292 203 +  59248254 TCTGGGTCCCCACC-GGGCTAGTGGATGGCCAGGGTGGCGTAGACGCTGGGCTCAGCTGGAGGTTCCCCTTCCTGGGGTGGAGGAGGCTCAGTTGCCTCCCGTCTGAGGGTCAAGCTCTGCAGCTGGGCGTAGGTCACATCCTGGGGGTCTTCAGATGCAGCAGCCTGCAGTGGGGGAGAGTGAGAGGGAAGGAACATGGTGGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47218372 202 +  51301725 TCTGGGTCCCCCAT-GGGCTAGTGGATGGCCAGAGTCTCAAAGACTCTGGGCTCAGCTGGAGGTTCCCCTTCCTGGGATGGAGGAGGCTCAGTTGCCTCCCGTCTGAGGGTCAAGCTCTGCAGCTGGGCGTAGGTCACATCCTGGGGGTCTTCAGATGCAGCAGCCTGCAgtgggggagagtgagagggaaggagcgtggt-gg
i papAnu2.chr19             I 31878 C 0
s chlSab2.chr6               46888383 202 +  50890351 TCTGGGTCCCCTCC-GGGTTAGTGGATGGCCAGGGTGGCGTAGACGCTGGGCTCAGCGGGAGGTTCCCCTTCCTGGGTTGGAGGAGGCTCAGTTGCCTCCCGTCTGAGGGTCAAGCTCTGCAGCTGGGCGTAGGTCACATCCTGGGGGGCTTCAGATGCAGCAGCCTGCAGTAGGGGAGAGTGAGAGGGAAGGAACGTGCT-GG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45512753 202 +  49145316 TCTGGGTCCCC-CT-GGACTAGTGGATGGCCACAGTGGCGTAGATGCTGGGCTCAGCTGGAGGGGCCCCTTCCTGAGAGGGAGGAGGCTCAGTTGCCTCCCGTCTGAGGGTCAAGCTGTGCAGCTGGGCGTAAGTCACATCCTGGGGGCCTTCAGAGGCAGCAGCCTGCAGTGTGGGAGAGTGAGAGGTAGGGAACGTGGTGGG
i calJac3.chr22             C 0 I 27011
s mm10.chr7                   3712693 174 + 145441459 ----------------------------GCCAGAGTAGCATATACACTGGGCTCCTCTGGGGCTTCCCCTGCCTGGGAGAGAGGAGATGCAGCTGCCCCCTGTCTGAGTGTCCTGCTGCACAGCTGGGCATAGGTCACATCCTGGGACTCCCCAGATTCGGCAGCCTGGAGTGGGAGAGGGTGAGAGA-AAGGTATGTGATTT-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19701075 203 - 122678785 TCTGGGTCCTTCCT-GGGCTAGTGAATGGCCAGAGCAGCATACACGCTGGGCTCTGCTGGGGGCTCCCCTGACTGGGAGGGAGAGGATGCACTTGTCTTCTGTCTGAGGGTCAAGTGGTTCAGCTGAGCGTAGGTCACATCTGGGGGGGCGTCAGATGCAGCAGCCTGCAGCAGGGGAGAGTGAGAGGGGAGGTTGGTGTTGGG
i canFam3.chr1              C 0 C 0

a score=273099.000000
s hg38.chr19_GL949751v2_alt    192261 73 +   1002683 GGTGGGGGAGGCCTGGGGGCCTGGAGAGGAAAGGACTCACCTCAGTGTCCATCTGCCTGTCCTCTTCCACCTG
s panTro4.chr19              59124042 73 +  63644993 GGTCGGGGAGGCCTGGGGGTCTGGAGAGGAAAGGACTCACCTGAGTGTCCATCTGCCTGTCCTCTTCCGCCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002495 73 +  60714840 AGTCGGGGAGGCCTGGGGGCCTGGAGAGGAAAGGACCAGCCTAAGTGCCCATCTGCCTGTCCTCTTCTGCCTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102772727 73 - 106955855 GGTCGGGGAGGCCTGGGGGCCTGGAGAGGAAAGGACTCACCTCAGTGTCCATCTGCCTGTCCTCTTCTGCCTG
i nomLeu3.chr10             C 0 M 1242
s rheMac3.chr19              60061746 73 +  64156825 GGTGGGGGAGGCCTGGGGGCCTGGAGAGGAAAGGACTCACCTCAGTGTCCATCGGCCTGTCCTCTTCCGCCTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55084495 73 +  59248254 GGTGGGGGAGGGTTGGGGGCCTGGAGAGGAAAGGACCAGCCTCAGTGTCCCTCTGCCTGTCCTCTTCCGCCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47218574 73 +  51301725 ggtgggggaggcctgggggcctggagaggaaaggaCCAGCCTGAGTGTCCATCTGCCTGTCCTCTTCCACCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46888585 73 +  50890351 GGTGGGGGAGGCCTGGGGGCCTGGAGAGGAAAGGACCAGCCTGAGTGTGCATCTGCCTGTCCTCTTCCGCCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45539966 73 +  49145316 GGTGGGTGAGGCCTGGGGGCCTGGAGAGGAAAGTATCTACCTGACTGTCCATCTGCCTGTCCTCTTCTGCCTG
i calJac3.chr22             I 27011 C 0
s mm10.chr7                   3712867 73 + 145441459 GCTTGGGGAAACCTGCAGGTCTGTGGAGGACAGGACCCACCTGATTGTTTGCTCCTTGGCCCTCTTCTGCTTG
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19701278 73 - 122678785 GTGGGGGGAAGCCAGGGTGATCAGAGAAGACAGGGCCCACCTGACTGTCCATCCACCTATCTTCCTCTGCTTG
i canFam3.chr1              C 0 C 0

a score=715824.000000
s hg38.chr19_GL949751v2_alt    192334 266 +   1002683 TCTGTCCTTTGTGTCCAGGAATTCCCCAGACAGTGAGGAGGGAGGAGAGGCCATTTCTCTCCTAGGACTGGAGTGTT------TCACCGGGGCATACGTCACTGCCTGGGGGTCTTCATCGTGTGGGCTCTGCTGGAGAGAGACAGTGGTGGGG-------G-----GTGTCCTTGAGTCCCCCT---GACCTCCTGGAGTCAATTTTCCTCACTGTTCCCGGGGTGAT-----------------CCGATTACATCCCT---TTCCTGATGGAATCT-CAGGGACGCCCTAAGGCCGTGGAGggtct
s panTro4.chr19              59124115 266 +  63644993 TGTGTCCTTTGTGTCCAGGAATTCCCCAGACAGTGGGGAGGGAGGAGAGGCCATTTCTCTCCTAGGTCTGGAGTGTT------TCACCGGGGCATACGTCACTGCCTGGGGGTCTTCATTGTGTGGGCTCTGCTGGAGAGAGACAGTGGTGGGG-------G-----GTGTCCTTGAATCCCCCT---GACCTCCTGGAGTCAATTTTCCCCACTGTTCCCCGGGTGAT-----------------CCGATTACATCCCT---TTCCTGATGGAATCT-CAGGGACGCCCTAAGGCCGTGGAGggtct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002568 266 +  60714840 TGTGTCCTTTGTGTCCAGGAATTCCTCAGACAGTGGGGAGGGAGGGGAGGCCATTTCTCTCCTAGGTCTGGAGTGTT------TCACTGGGGCATATGTCATTGCCTGGGGGTCTTCATCGTGTGGGCTCTGCTGGAGAGAGACAGTGGTGGGG-------G-----GTGTCCTTGAATCCCCCT---GACCTCCTGGAGTCAATTTTCCTCACTGTTCCCAGGGTGAT-----------------CTGATTACATCCCT---TTCCTGATGGAATCT-CAGGGACGCCCTAAGGCCGTGGAGggtct
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60061819 266 +  64156825 TGTGTCCTTTGTGTCCAGGAATTCCTCGGACAGTGGGGAGGGAGGGGAGGTCATTTCTCTCCTAGGTCCGGAGTGTT------TCACCCGGGCATACGTCACTGCCTGGGGGTCTTCATCGTGTGGGCTCTGCTGGAGAAAGACACTGGTGGGG-------G-----GTGTCCTTGAGTCCCCCT---GACCCCCTGGAGTCAATTTTCCTCACTGTTCCCAGGGTGAT-----------------CTGATTACATCCCT---TTCCTGATGGAATCT-CAGGGACGCCCTAAGGCCGTGGAGGGTCT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55084568 266 +  59248254 TGTGTCCTTTGTGTCCAGGAATTCCTCGGACAGTGGGGAGGGAGGGGAGGCCATTTCTCTCCTAGGTCCGGAGTGTT------TCACCCGGGCGTATGTCACTGCCTGGGGGTCTTCATCGTGTGGCCTCTGCTGGAGAAAGACACTGGTGGGG-------G-----GTGTCCTTGAGTCCCCCT---GACCCCCTGGAGTCAATTTTCTTCACTGTTCCCAGGATGAT-----------------TCGACTACATCCCT---TTCCTGATGGAATCT-CAGGGACGCCCGAAGGCCGTGGAGggtct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47218647 266 +  51301725 TGTGTCCTTTGTGTCCAGGAATTCCTCggacagtggggagggaggggaggccaTTTCTCTCCTAGGTCTGGAGTGTT------TCACCCGGGCATATGTCACTGCCTGGGGGTCTTCATCGTGTGGTCTCTGCTGGAGAAAGACACTGGTGGGG-------G-----GTGTCCTTGAGTCCCCCT---GACCCCCTGGAGTCAATTTTCCCCACTGTTCCCAGGGTGAT-----------------CCGATTACACCCCT---TTCCTGATGGAATCT-CAGGGATGCCCTAAGGCCGTGGAGGGTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46888658 266 +  50890351 TGCGTCCTTTGTGTCCAGAAATTCCTCGGACAGTGGGGAGGGAGGAGAGGCCACTCCCCGCCTGAGTCTGGAGTGTT------TCACCTGGGCATGTGTCACTGCCTGGGGGTCTTCATCGTGTGGGCTCTGCTGGAGAGAGACACTGGTGGGG-------g-----gtgtccttgaatccccct---gaccccctggagtcaattttcttcactgttcccagggtgat-----------------ccgattaTATCTCT---TTCCTGATAGAATCT-CAGGGATGCCCTAAGGGCGTGGAGggtct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45540039 264 +  49145316 TTTGTGCTATGTGTCCAGGAATTTCCTGGACAGGGGGGAAGCAGGGGAGGCCATTTCTCTCTTAGGTCTGGAATGTT------TCACCTCAGCATAGGTCTTCGCCTGGGGGTCTTCATCATATGGGCTCTGCTCGAGACAGACAGTGGTGGGA-------G-----GTGTCCTTGAGTCCCCCT---GACCTCCTCGAGTCAGTTTTCC-CACTGTTCCCTGAGTGAT-----------------CCCATTACATCCCT---TTCCTGATGGAATCT-CAGGG-CGCCCTAAGGCTGTGGAGggtct
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3712940 250 + 145441459 TTCATATTCTGTGTTCAGTTGTTCCCTTGACATGACAGAAGGTGAGACATGTCCTGCCTTCCTGAGCCTGGAGGGTT------TCACCTGGGCATAAGTCTCTCCCTGGGGATCTTCCTCAGGTGGTGTCTGT---AGCAAGGAAGTAGTGAGGTACAGACA-----GTGTCTTCCTGTTCCCCTGGGGATCTTCTTTGGCCAG-TTTCCATAGCATGGCTAGAGTGAC-----------------CTGTTTAGATTACTGCCTCTCTGATGGGAACT---------TCCT-----------------
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19701351 293 - 122678785 TCTGTCCTCTGAGTCCTGTAATCCTCCTGAAAGGGAGGAAGGAGGAGTGGCCAGGACCTGCCTGGGACTTGATCATTAGTAGCTCACCTGGGCGTACATGTCTCCATGGGGTTCTTCATCCTGTGTGTTCTTCTGCAGACAGACAGTGAGGGGG-------AGGTTTgtctccttgaattcactc---catcacttc-agtcaatttgccacactgtggccagagtgatgctttcaaactttcaggcagattaggtcact---ttcctgctggactctgcagggacttcctga-gccttgaagcatgt
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             102772800 1242 - 106955855 M

a score=88021.000000
s hg38.chr19_GL949751v2_alt    192600 23 +   1002683 ggccgctccctccctgtggttct
s panTro4.chr19              59124381 23 +  63644993 ggccgctccctccctgtggttct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002834 23 +  60714840 ggccgctccctccctgtggttct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102774042 23 - 106955855 GGCCGCTCCCTCCCTGTGGTtct
i nomLeu3.chr10             M 1242 C 0
s rheMac3.chr19              60062085 23 +  64156825 GGCCGCTCCCTCCCTGTGGTTCT
i rheMac3.chr19             C 0 I 43517
s macFas5.chr19              55084834 23 +  59248254 ggccgctccctccctgtggttct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47218913 23 +  51301725 GGCCGCTCCCTCCCTGTGGTTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46888924 23 +  50890351 ggccgctccctccctgcggttct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45540303 23 +  49145316 ggctactcccttcctgcggttct
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3713190 21 + 145441459 GG--GTTTCCTTCTTACAGTTCA
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19701644 22 - 122678785 -gatgttttctttctatggctct
i canFam3.chr1              C 0 C 0

a score=151449.000000
s hg38.chr19_GL949751v2_alt    192623 50 +   1002683 ggcctctgctcctcactctga-ccttgcccatttggctgcagcctcaca-gg
s panTro4.chr19              59124404 50 +  63644993 ggcctctgctcctcactctga-ccttgcccatttggctgcagcctcacg-gg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002857 51 +  60714840 ggcccctcctcctcactctga-ccttgcccatttggctgcagcctcacgcgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102774065 51 - 106955855 ggcctctcctcctcattctga-ccttgcccatttggctgcagcctcacgcgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60105625 50 +  64156825 ggcctctcctcctcactctga-ccttgcccatttggctgcagcctaatgcc-
i rheMac3.chr19             I 43517 T 43560
s macFas5.chr19              55084857 50 +  59248254 ggcctctcctcctcactctga-ccttgcccatttggctgcagcctcacacg-
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47218936 50 +  51301725 GGCCTCTCCTCCTCACTCTGA-CCTTGCCCATTTGGCTGAAGCCTCACGCC-
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               46888947 50 +  50890351 ggcctctcctcctcactctga-ccttgcccatttggctgcagcctaatgcc-
i chlSab2.chr6              C 0 I 2
s calJac3.chr22              45540326 50 +  49145316 ggcctctcctcctcactctga-ccttgcccatttggctgcagcctcacgcc-
i calJac3.chr22             C 0 I 2
s mm10.chr7                   3713211 50 + 145441459 AGCTTAACCTGA-CATTCAGACCCTTGCTGTCTTGGCTCTAGCCACACAGT-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19701666 50 - 122678785 -ggttctattcctgacactgtttcttgcccatttgccaccagccatatgac-
i canFam3.chr1              C 0 C 0

a score=13929.000000
s hg38.chr19_GL949751v2_alt    192673 5 +   1002683 ---ccttc
s panTro4.chr19              59124454 5 +  63644993 ---ccttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002908 5 +  60714840 ---ccttc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102774116 5 - 106955855 ---ctttc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55084908 5 +  59248254 ---ccttc
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47218988 5 +  51301725 ---CCTTC
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               46888999 5 +  50890351 ---ctttc
i chlSab2.chr6              I 2 C 0
s calJac3.chr22              45540378 5 +  49145316 ---ccttc
i calJac3.chr22             I 2 C 0
s mm10.chr7                   3713261 5 + 145441459 ---CCATC
i mm10.chr7                 C 0 I 326
s canFam3.chr1               19701716 8 - 122678785 ccatgttc
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60105675 43560 +  64156825 T

a score=115860.000000
s hg38.chr19_GL949751v2_alt    192678 49 +   1002683 ctgcaagagctcgctgctgcctgggggcctttgcacggctgtttcctct
s panTro4.chr19              59124459 49 +  63644993 ctacaagagctcgctgctgcctcggggcctttgcacggctgtttcctct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002913 49 +  60714840 ctgcaagagcttgctgctgcctcggggcctttgcacggctgtttcctct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102774121 36 - 106955855 -------------ctgctgcctcggggcctttgcacggctgtttcctct
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55084913 49 +  59248254 ctgcaagagctcgctgctgcctcggggcctttgcacggctgtttcttct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47218993 49 +  51301725 CTGCAAGAGCTTGCtgctgcctcaggacctttgcacggctgtttcctct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46889004 49 +  50890351 ctgcaagagctcgctgctgcctcaggacctttgcacggctgttgcctct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45540383 48 +  49145316 ccacaagagctcactgcggcctcggggcc-ttgcactgctgtttcctct
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19701724 44 - 122678785 ctgaaaaaccatgttgttgcctcaggacctttgcac-----ttgctact
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3713266 326 + 145441459 I
e rheMac3.chr19              60105675 43560 +  64156825 T

a score=282852.000000
s hg38.chr19_GL949751v2_alt    192727 122 +   1002683 gcctgcaggggctcgtctatcagaggatcatgtgccccactctgtccaggcttctcagatgacagctgagcagacagccctcccctt-ccattcagactggccccactgccccacactctctg
s panTro4.chr19              59124508 122 +  63644993 gcctgcaggggctcgtccattagaggatggtgtggccccctccgtccaggcttctcagatgacagctgagcagacagccctcccctt-ccattcagactggccccactgccccacactctctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56002962 122 +  60714840 gcctgtagggtctcgtccattagaggatcgtgtggccccctccgtccaggcttctcagatgacagctgagcagacagccctcccctt-ccattcagactggccccactgccccacactctctg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102774157 122 - 106955855 gcctacaggggctcgtctattagaggatcgtgtgctcccctccgtccaggcttctcagatgacagctgagcacacagccctcccctt-ccattcagactggccccactgccccacactctctg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55084962 120 +  59248254 gcctgcaggggctcgtccattagaggatcctgtggccccctccgtccaggcttctcagatgacagctgagcagacagccctcccctt-acattcagactggccccactgccccaca--ctctg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47219042 120 +  51301725 gcctgcagGGGCTCGTCCATTAGAGGATCCTGTGGCCCCCTCCGTCCAGGCTTCTCAGATGACAGCTGAGCAGAGAGCCCTCGCCTT-ACATTCAGACTGGCCCCACTGCCCCACA--CTCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46889053 120 +  50890351 gcctgcaggggctcgtccattagaggatcctgtggccccctccgtccaagcttctcagatgacagctgagcagacagccctctcctt-acattcagactggccccactgccccaca--ctctg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45540431 123 +  49145316 acctgcaggggctcgtccattagaggatggtgtggccctctccgtccaggcttctcagatgacagctgaccagacagccctcgccttaccattcagactggccccactgccctgcactctctg
i calJac3.chr22             C 0 C 0
e mm10.chr7                   3713266 326 + 145441459 I
e canFam3.chr1               19701768   0 - 122678785 C
e rheMac3.chr19              60105675 43560 +  64156825 T

a score=641048.000000
s hg38.chr19_GL949751v2_alt    192849 271 +   1002683 ccctttccctggtgtatgttcctta-cagcacgttgcactcctggacacgatgca-tttatttgcattttgtctccca-ccatgaggtgagctca-gga-ggcgggggcggctttgctccctgctgtgtctgcagctcccatggggagccccatccacagtgagctccctgggaacactcgctggatgaatgaatGAAGAGGAGCCCAGGGGACGG-AGGTGGTTCATTTATTCGT-CATCCTCCTGAGGCCTGGGGA-GAGCTCTAACAACCAGACGG
s panTro4.chr19              59124630 271 +  63644993 ccctttctctggtttatgttcctta-cagcacgttgcactcctggacatggtgca-tttatttgcattttgtctccca-ccatgaggtgagctca-gga-ggcgggggcggctttgctccctgctgtgtctgcagctcccacagggagccccatccacagtgagctccctgggaacactcgctggatgaatgaatGAAGAGGAGCCCAGGAGACGA-AGGTGGTTCATTTATTCCT-CATCCTCCTGATGGCTGGGGA-GCGCTCTAACTACCACATGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56003084 267 +  60714840 ccctttccctggtttatgttcctta-cagcacgttgcactcctggacacggcgca-tttatttgcattttgtctccca-ccacgaggtgagctca-gga-ggcgggggcggctttgctccctgctgtgtctgcagctcccacggggagcccgatccacagtgagttccc-gggaacactcgctggatgaatgaatGAAGGGGAGCCTGGGGGACCA-GGGTGGTTCATTTATTCCT-CA---TCctgaggcctgcgga-gcgctctaacaaccagatga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102774279 270 - 106955855 ccctttccctggtttatgttcctta-cagcacgttgcactgctggacacggtgca-tttatttgcattttgtctccca-gcacgaggtgagctca-gga-ggcgggggcggctctgctccctgctgcgtctgcagctcccacggggagcccgatccacagtgagctccctgggaacactcgctggatgaatgaatGAAGGGGAGCCCAGGGGACT--GGGTGGTTCATCTATTCCT-CATCCTCctgaggcctgggga-gcgctctaacaaccagacgg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55085082 268 +  59248254 ccctttccctggtttatgtttctta-cagcacgttgcactgctggacac--tgca-tttatttgcattttgtctccca-ccacgaggtgagctca-gga-ggcgggggcggctctgctccctgctgtgtctgcagctcccacagggagcccgatccacagtgagctcct-gggaacactggctggatgaatgaatgaaGGGGAGCCCAGGGGACCG-GGGTGGTTCATCTATTCCT-CATCCTCctgaggcctgggga-gcgctctaacaaccagacgg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47219162 269 +  51301725 CCCTTTCCCTGGTTTATGTTTCTTA-CAGCACGCTGCACTCCTGCACATGGTGCA-TGTAGTTGCATTTTGTCTCCCA-CCACGAGGTGAGCTCG-GGA-GGCGGGGGTGGCTTTGCTCCCTGCTGTGTCTGCAGCTCCCACAGGGAGCCTGATCCACAGTGAGCTCCT-GGGAACACtcgctggatgaatgaatgaa-gggagcCCAGGGGACCG-GGGTGGTTCATCTATTCCT-CATCCTCCTGAGGCCTGGGGG-GCGCTCTAACCACCAGACCG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46889173 270 +  50890351 ccctttccctggtttatgtttctta-cagcacgttgcactcctgcacatggtgca-tttatttgcattttgtctccca-ccatgaggtgagctcc-gga-ggcgggggtggctctgctccctgctgtgtctgcagctcccacggggagcccgatccacagtgagctcct-gggaacactcgctggatgaatgaatgaaGGGGAGCCCAGGGGAGCA-GGGTGGTTCATCTATTCCT-CATCCTCctgaggcctgggga-gcgctctaaccaccagacgg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45540554 265 +  49145316 ccctttccctggttcattttcctta-cagcacgtcgcactcctggacac--tgtg-tttatttgcattttgtctccca-ccacgaggtgagctca-ggagggcaggggcggctttgctccctgctgtgtctgcagctcccacggggagccccatccacagggagctcct-gggaacactcgctgggtgaatgaatGAAGGGAAGCCCAGGGCACCA-GTGTGGTTC----ATTCCT-CATCCTCCTGAGGCCTGGGGA-TCCCTCTAACAACCAGACGG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19701768 272 - 122678785 cccATATCTTGTTTTATATTTCTTAGCCTCACTTTGTGCTTGAGGATGC--TGCAGCTTCTTTGCATATTGTCTGACACCCACAAGGAGAGCTCACTGA-GTATGGTTCAGTTTTGCTTACTGTTGAGCTTGCAAC-ACTAGGTGGGGCCTGGT-AATATTAGACTGCTCGTGCTCCTCTGCTGAGTGAATGAATGAA-GGAGGCCTAGAGACTTGTGGGTGATTCACTTCTTCATGCACCCTGTTGAGATCTGGGTATGCATCCCAACAACAAGAAG-
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3713266 326 + 145441459 I
e rheMac3.chr19              60105675 43560 +  64156825 T

a score=540609.000000
s hg38.chr19_GL949751v2_alt    193120 208 +   1002683 CCAAACAGAGGATGAGGAG-CAGGAAGGGGAC-----CCGGGAGGAGGCCCACGAGGTCCCAGGACAG-CAGAAGAGAGTGAGGTCACAGCAGGCGGGAGGCAGCATGCTGGACA------AGGAGG--GGTCCAC-CGT-GACGATGCTGAGAGCCGGGGGAAG--GAGGACAGAGAAGTCC-TGCAGGATTAGATCTGGCACCAGGAGGCCTTTGGTGCCTGGGAC
s panTro4.chr19              59124901 208 +  63644993 CCAAACAGAGGCTGAGGAG-CAGGAAGGGGAC-----CCGGGAGGAGGCCCACGAGGTCCCAGGACAG-CAGGAGAGAGTGAGGTCGCAGCAGGCGGGAGGCAGCATGCTGGACA------AGGAGG--GGTCCAC-CGT-GACGATGCTGAGAGCCGGGGGAAG--GAGGACAGAGAAGTCC-TGCAGGATTAGATCTGGCACCAGGAGGCCTTTGGTGCCTGGGAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56003351 208 +  60714840 ccaaacagaggatgaggag-caagaaggggac-----ctgggaggaggcccacgaggtcccaggacac-caggagagagtgacgtcacagcaggcgggaggcagcgtgctggaca------aggagg--ggtccac-cat-gacgatgctgagagccaggggagg--gaggacagagaagtcc-ttcaggattagatctgacactgggaggcctttggtgcccgggac
i ponAbe2.chr19             C 0 I 1
s nomLeu3.chr10             102774549 208 - 106955855 ccaaacagaggacgaggag-caggaaggggac-----ccgggaggaggcccacgaggttccaggacag-caggagagagtgaggtcgcagcaggcgggaggcagcgtgttggaca------aggagg--ggcccac-cgt-gacgatgctgagagccgggggaag--gaggacagagaagtcc-tgcaggattagatctggcaccaggaggcctttggtgcccgggac
i nomLeu3.chr10             C 0 I 1
s macFas5.chr19              55085350 207 +  59248254 ccaaacagaggaggaggag-caggaaggggac-----ccgggaggaggcccgcgaggtcccaggacag-caggagagagtgaggtcacagcaggcgggaggcagcgtgctggaca------aggagg--ggtccac-cgt-gatgatgctgagaaccgggggaa---gaggacagagaagtcc-tgcaggattagatctggcaccaggaggcctttggtgcccgggac
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47219431 207 +  51301725 CCAAACAGAGGAGGAGGAG-CGGGAAGGGGAC-----CCAGGAGGAGGCCCGCGAAGTCCCAGGACAG-CAGGAGAGAGTGAGGTCACAGCAGGCGGGAGGCAGCGTGCTGGACA------AGGAGG--GGTCCAC-TGT-GACGATGCTGAGAACCGAGTGAA---GAGGACAGAGAAGTCC-TGCAGGATTAGATCTGGCACCAGGAGGCCTTTGGTGCCCGGAAC
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46889443 207 +  50890351 ccaaacagaggaggaggag-cgggaaggggac-----ccgggaggaggcccgcgaggtcccaggacag-caggagagagtgaggtcacagcaggcaggaggcagcgtgctggaca------aggagg--ggtccac-cgt-gatgatgctgagaaccgggaaag---gaggacagagaagtcc-tgcaggattagatctggcaccaggaggcctttggtgcctgggat
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45540819 207 +  49145316 CCAAACAGAGGACGAGGAG-CAGGAAGGGGAC-----CCAGGAGTAGGCCCACGATGTCCCAGGACAC-CAGGAGAGAGTGAGGTCACAGCAGGCGGGAGGCAGCGTGCTGGACA------TGGAGG--GTCCACC-CTG-GATGGTGCTGAGAGCCAGGGAAG---GAGGACAGAGAAGTCC-TGCTGGATTAGATCCGGCACCAGGAGGCCTTTGGTGCCCAGGAC
i calJac3.chr22             C 0 I 1
s mm10.chr7                   3713592 210 + 145441459 CCAGACACATGCTAAAGAGCCAGAAAGGGGACAGGAGCTGGAAGAA-----ACATGGTCCCAGGAAAACCAGGAGAGAGTGAGG-CATAGAACCCAGGAGGCAG-GTGCTGGGCATAGGGCGGGAGT--GGTCAGC-TTTGGATATTGCTGAGGGCTGAGGGAGGCAGAAGAAAGAAGAGCCC-TGT---ACTAAGCTTGGCCCTAAGG----TTTAGCACTGTGGAT
i mm10.chr7                 I 326 I 1
s canFam3.chr1               19702040 180 - 122678785 TCAGACAGTGGATGGGTAG-CCAGACA----------TGGGGAGGAGGGCC------------------CAGGAG--------GTCACAGCGGG-ATGACCCAG-GTGCCCAAGA------AGGGAGAAGGTACACGTGG-GACAGAGCTGAGACAGGGTGGTGT--GAGGACAGAGAAGCATGTGTCAGATTAAGTTTGGCACCAAGAGGACCCTATGGTCCAGATG
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60105675 43560 +  64156825 T

a score=1680035.000000
s hg38.chr19_GL949751v2_alt    193328 571 +   1002683 -GGGGCGGG-ATCTCACCTGACTGTCCAGCTCCACCCTGTCCTCAGACTGTGTGTCCTTCACGGCAGCATCTGCTGGGGCAGAGCAAGGGGTTCGTCTCCT-----GGTTCTCTGAGACCTCTCAGTCCTGCTGGCCCCCTGCCCTGCTCCCAGATGGGGCCACCGA-ATGCAGG-------------------GAGGTCCCACAGTGTGG---GGCAAGACCATCTTCCACGGAGC----CCCAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGGGACTCCTGTCTCT--CCAGCAC-CCCCATTTG-----TCCC----CTCTCTT-CCTCTTACAGAGGTTTTCTTCCTGGACGTCAGCAGCTGGGCTGGACCTGGAG-GAGGACATGGGAGTGTGA-GGGGCAGTGTATGGGCTGT---GGTGGGTGGGAGTCTG-TGGTCTTTGGGGCA-GAATTACCTCCTCAGCAGGCCCCTGTCCTTGGGCTCTGTCTCCGCAGCCCCTGCAGGACGCTGGAAATCAGTCTTTCTCTGGTCTGGGTGAAGATGGACAGAGTCTCAGCCCTGGGAACATTAGAA-CTC-CCATTCTACACATGCAACTTGAG-GG-AAAGAAG
s panTro4.chr19              59125109 570 +  63644993 -GTGGCGGG-ATCTCACCTGACTGTCCAGCTCCACCTGGTCCTCAGACTGTGTGTCCTTCACGGCAGCATCTGCTGGGGCAGAGCAAGGGGTTCGTCTCTT-----GGTTCTCTGAGACCTCTCAGTCCTGCTGG-CCCCTGCCCTGCTCCCAGATGGGGCCACCAAGATGCAGG-------------------GAGGTCCCACAGTGTGG---GGCGAGACCATCTTCCACGGAGC----CCCAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGGGACTCCTGTCTCT--CCAGCAC-CCCCATTTG-----TCCC----CTCTCTT-CCTCTTACAGAGGTTTTCTTCCTGGACGTCAGCAGCTGGGCCGGACCTGGGG-GAGGACATGGGAGTGTGA-GGGGCAGTGTATGGGCTGC---AGTGGGTGGGAGTCTG-TGGTCTTT-GGGCA-GAATTACCTCCTCAGCAGGCCCCTGTCCTTGGGCTCTGTCTCCGCAGCCCCTGCAGGACGCTGGAAATCAGTCTTTCTCTGGTCTGGGTGAAGATGGACAGAGTCTCAGCCCTGGGAACATTAGAA-CCC-CCATTCTACACATGCAACTTGAG-GG-AGAGAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56003560 570 +  60714840 -ggggcagG-GTCTCACCTGAGTGTCCAGCTCCACTCCGTCCTCAGGCTGTGTGTCCTTCACAGCAGCATCTGCTGGGGCAGAGCAAGGGGTTTGTCTCCT-----GGTTCTCTGAGACCTCTCAGTCCTGCTGG-CCCCTGCCCTGCTCCCAGATGGGGCCACTGAGATCTAGG-------------------GAGGTCCCACAGTGTGG---GGCGAGACCATCTTCCATGGAGC----CCTAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGGGACTCCTGTCTCT--CCAGCAC-CCCCAGTTG-----TCCC----CTCTCTT-CCTCTTACAGAGCTTTTCTTCCTGGATGTCAGCAGCTGGGCTGGACCTGGAG-GAGGAAACGGGAGTGTGA-GGGGCAGTGTATGGGCTGC---GGTGGGTGGGAGTCTG-GGGTCTTT-GGGCA-GAATTACCTCCTCAGCAGGCCCCTGTCCTTGGGCTCTGGCTCCACAGCCGCTGCAGGACGCTGGAAATCAGTCTTTCTCTGGTCTGGGTGAAGATGGACAGAGTCTCAGCCCTGGGAACATTAGAA-CCC-CCATTCTACACATGCAACTTGAG-GG-AAAGAAG
i ponAbe2.chr19             I 1 C 0
s nomLeu3.chr10             102774758 570 - 106955855 -agggcggG-GTCTCACCTGACTGTCCAGCTCCACCCCGTCCTCAGACTGTGTGTCCTTCATGGCAGCATCTGCTGGGGCAGAGCAAGGGGTTCGTCTCCT-----GGTTCTCTGAGACCTCTCAGTCTTGCTGG-CCCCTGCCCTGCTCCCAGATGGGGCCACTGAGATCCAGG-------------------GACGTCCCACAGTGTGG---GGCAAGACCATCTTCCACGGAGC----CCCAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGGGACTCCTGTCTCT--CCAGCAC-CCCCATTTG-----TCCC----CTCTCTT-CCTCTTACAGAGGTTTTCTTCCTGGACGTCAGCAGCTGGGCTGGACCTGGGG-GAGGACATGGGAGTGTGA-GGGGCAGTGTATGGGCTGC---GGTGGGTGGGAGTCTG-GGGTCTTT-GGGCA-GAATTACCTCCTCAGCAGGCTCCTGTCCTTGGGCTCTGGCTCTGCAGCCTCTGCAGGACGCTGGGAATCAGTCTTTCTCTGGTCTGGGTGAAGATGGACAGAGTCTCAGCCCTGGGAACATTAGAA-CCC-CCATTCTACACATGCAACTTGAG-GG-AAAGAAG
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              60062115 567 +  64156825 -GGGGCGGG-GTCTCACCTGACTGTCCAGCTCCACCCCGTCCTCAGGCTGTGTGTCCTTCATGGCAGCATCTGCTGGGGCAGAGCAAGGGGTTTGTCTCCTGGGAAGGATCCCTGAGAGCTCTCAGTCCTGCCGG-CCCCTGCCCAGCTCCCA-CTAGGGCCACTGAGATCCAGG-------------------GAGGCCCCACAGTGGGG---GGCGAGACCATCTTCCACGGAGC----CCCAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGG-------GTCTCC--CCAGCAC-CCCCATTTG-----TCCC----TTCTCTT-TCTCTTACAGAGGTTTTCTTCCTGGATGTCAGCAGCTGCGCTGGACCTGGGG-GAGGACACAGGAGTGTGA-GGGGCAGTCTATGGGCTGT---GGCGGGTGGGAGTCTG-GGGTCTTC-AGGCA-GAATTACCTCCTCAGCAGGCCCCTGTCCTTGGGCTCTGGCTCTGCAGCCCCTGCAGGATGCTGGAAATCAGTCTTTCTCTGGTCTGGGTGAAGATGGACAGAGTCTGAGCCCTGGGAACATTAGAA-CCC-CCATTCTACACAGGCAACTTGAG-GG-GAAGAAG
i rheMac3.chr19             T 43560 C 0
s macFas5.chr19              55085558 567 +  59248254 -ggggcggG-GTCTCACCTGACTGTCCAGCTCCACCCCGTCCTCAGGCTGTGTGTCCTTCACGGCAGCATCTGCAGGGAAACAGCAAGGGCTTCGTCTCCTGGGAAGGATCCCTGAGAGCTCTCAGTCCTGCTGG-CCCCTGCCCAGCTCCCA-CTAGGGCCACTGAGATCCAGG-------------------GAGGCCCCACAGTGGGG---GGCGAGACCATCTTCCACGGAGC----CCCAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGG-------GTCTCC--CCAGCAC-CCCCATTTG-----TCCC----TTCTCTT-TCTCTTACAGAGGTTTTCTTCCTGGACGTCAGCAGCTGCGCTGGACCTGGGT-GAGGACACGGGAGTGTGA-GGGGCAGTATATGGGCTGT---TTCGGGTGGGAGTCTG-GGGTCTTC-AGGCA-GAATTACCTCCTCAGCAGGCCCCTGTCCTTGGGCTCTGGCTCCGCAGCCCCTGCAGGACGCTGGAAATCAGTCTTTCTCTGGTCTGGGTGAAGATGGACAGAGTCTCAGCCCTGGGAACATTAGAA-CCC-CCATTCTACACATGCAACTTGAG-GG-GAAGAAG
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47219639 591 +  51301725 -GGGGCGGG-GTCTCACCCGACTGTCCAGCTCCACCCTGTCCTCAGGCTGTGTGTCCTTCACGGCAGCATCTGCTGGGCCAGAGCAAGGGGTTCGTCTCCTGGGAAGGTTCCCTGAGACCTCTGAGTCCTGCTGG-CCCCTGCCCAGCTCCCA-CTAGAGTAGCCGAGATCCAGGGAGCGACTGTGATGTCCCCGAGGTCCCATAGTGTGG---GTTCAGACCACCTTCCCCTTGGC----CCCAGACCCTTCCC---AGCCTGTGCTCATGCCCCCATTGCTACAGAAACTTTGG-------AGCCCC--CTTGCCCACCCCAGGTG---CCCCCC----TTTTCTTGTCACTCACTGAGAATTTCCTCCTGGGCGTCAGCAACTGGGCTGGCCCTGGGG-GAGGACACGGGAGTGTGA-GGGGCAGTGAGGGGCCTGTGCGGGCGGATGGGAGTCTG-GGGTCTTC-AGGCA-GAATTACCTCCTCCGCAGGACCTGGTCCTTGGGCTCTGGCTCCGCAGCCCCTGCAGGACGGTAGAAA------------TGGGCTGGGCAGAGATGGACAGAGTGTCAGGCTTGGGAGAATTCGAA-CCAGCTGCCCTGCACACACAACttgagcag-aaagaaa
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46889651 567 +  50890351 -ggggcggG-GTCTCACCTGACTTTCCAGCTCCACCCCATCCTCAGGCTGTGTGTCCTTCACGGCAGCATCTGCAGGGACAGAGCAAGGGGTTTGTCTCCTGGGAAGGATCCCTGAGACCTCTGAGTCCCGCTGG-CCCCTGCCCAGCTCCCA-CTAGGGCCACTGAGATCCAGG-------------------GAGGTCCCACAGTGGGG---GGCGAGACCATCTTCCATGGAGC----CCCAGACCCTTCCC---AGCCCCT--------CCCTGTTGCTACTGAAATTTTGG-------GTCTCC--CCAGCAC-CCCCATTTG-----TCCC----TTGTCTT-TCTCTTACAGAGATTTTCTTCCTGGACGTCAGCAGCTGTGCTGGCCCTGGGG-AAGGACACGGGAGTGTGA-GGGGCAGTATATGGGCTGT---GGTGGGTGGGAGTCTG-GGGTCTTC-AGGCA-GAATTACCTCCTCAGCAGGCCCCTGTCCTTGGACTCTGGCTCCGCAGCCCCTGCAGGACGCTGGAAATCAGTCTTCCTCTGGTCTGGGTGAAGATGGACAGAGTCTCAGCCCTGGGAACATTAGAA-CCC-CCATTCTACACATGCAACTTGAG-GG-GAAAAAA
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45541027 578 +  49145316 -GGGGCGGG-GTCTCACCTGAGTGTCCAGCTCCACCTCGTCCTCAGGCTGTGTGTCCTTCACGGCAGCATCTGCTGGG-CAGAGCAAGGGGATTGTCTCCTGGGAAGTTTCCCTGGGATGTCTCAGCCCCGccag-cccctgcccagctcccagatggggcagctgagatccagggaggggttgtgatgtccc-aaggtcccaca------------------------CCCTGAGC----CCCAGACCCCTTCC---AGCCTCTGCCCTTT-CCTCATTGCGATGGAAACTGTGG-------GTCCCC--ATCTCCC-TCCTGGCTGGGGTCACCT----CTTCCTG-TCACTCACAGAGAGTTTCTTCTTGGGTGTCGGCAGCTGGGCTGGATCTGGGG-GAGGACACAGGAGCTGTA-GGAGCAGTGTGTGGGCTGG---GGTGAGTGGGAGTCTG-GGGTCTTC-AGGCA-GAATTACCTCCTCTGCAGGCCTCCGCCTGTGGGTTCTGGCTTCACAGCCCCTGCAGGATGTTGGAAATCAGCCTCTCTCTGGGCTGTGTGAAGAAGGACAGAGTCTCAGCCTTGGGAACATTGGAA-CCATCTGCCCTGCAAACGCAGCTCGAA-GGTAAGGAAG
i calJac3.chr22             I 1 C 0
s mm10.chr7                   3713803 550 + 145441459 -AGGACAGGTGCCTTACCCAGCTGTTCAGCTCCACTCCATCCTCAGTTTGCATGTCCTCCACTGAAGCATCTGTCATAGCAGAACACATAGGATGTCTCCTGACTAGAGTCTA-GGGCTGTCTCAGACCCCTAGT-TTCCTGCCTTGCTCCAGGTTGGG---ACAGAGAATCAGG-------------------GAAAGCT---------G---GGACATCCCTGCTTCCATCAAGTGAAGTTCAGATCCGTACAATGAAACCCT--------CTCCAACACCCCGGTAATTCTGA-------AGCCCCAGCCATCTC-CCCC----------CCCCAGGACTCCCTT-TCTCTCACATAGGCTTTCTTCCTGGGTGGCAGCAGCTGGGTTGGGCCTGGAG---GGACAAGGAGACGTCACTTAGCAGTGAGATGTGTCA---TACGGGCAGGGGTCTA--GGTCTCT-GT----GATTTACCTCTTCTGGAGTTCTCCTTTCCTGGTTATGGGCTCTTCAGCTCCTGAAGAAAGTTGCAAGTCTTTCTCTTTCTGGACT--GCAAGGGAGG--GGAGTCTCAGC--TAGGAGGATGGGAAGCCC-CTCCCCTGGGCATG----TTCAG-GG-AAGGAAG
i mm10.chr7                 I 1 C 0
s canFam3.chr1               19702220 514 - 122678785 GGAGTGGGG-GTCTCACCCGATGGTCCAGCTCGACCCCTTCCTCAGGCCATGTGTCTTGCACAGCAGCATCTG-TGGAGTAGAAC--GGGGTGTGTGTCTTGGCG-GGTTCCCTGAGCTCTCTCAGGGGTGCAGA--CCCTGACCTGCTCCCAGATGAGGAGGCTGTGACCCAGG-------------------G-GATCCAGGGGTGAGGTTAGGTGCTAAGATCATGCATGTGGG----AATTG------------AGTCCTT--------ACCCCTTACCCCAAACCTTCCAG---------------CCCACCC-CCAAGGCAG-----CCCC---------TT-CCTCTCACAGAGGGTTTCCTCCTGGGTGGTAGCAGCTGGGCTGGAGCTGGGGAGGAGACATGG---TGTCA-GAGGGCATGCAGGGGGTG----GGTGGGTGGGAGTCTGGGGGTCTGT-GGGCAGGAGTTACCTGTCCTGCAGGCCTCTGTCCTTGGGCTCTGGGTCTGCATCCCCTGCAGGACATTAGGAATCAGCATCCCTCTGGAATGGG-----------------------------AGGTTACAA-CCT-CCTGCCTCCATGTGATACC--AG-GG-AAAGGAG
i canFam3.chr1              C 0 I 125

a score=11595.000000
s hg38.chr19_GL949751v2_alt    193899  4 +   1002683 GAAA--------
s panTro4.chr19              59125679  4 +  63644993 GAAA--------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004130  4 +  60714840 GAAA--------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102775328  4 - 106955855 GAAA--------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60062682  4 +  64156825 GAAA--------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55086125  4 +  59248254 GAAA--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47220230  4 +  51301725 gaaa--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890218  4 +  50890351 GAAA--------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45541605  4 +  49145316 GAAA--------
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3714353  4 + 145441459 GAAG--------
i mm10.chr7                 C 0 I 23
s canFam3.chr1              102997924 11 + 122678785 -AAAGGGTTCTA
i canFam3.chr1              T 5795 C 0

a score=82266.000000
s hg38.chr19_GL949751v2_alt    193903 41 +   1002683 ACTAAAAATATTCCTGCATGGATGTTCCAAATATTTTATGA
s panTro4.chr19              59125683 39 +  63644993 ACTAAAAATATTCCTGCATGGATGTTCCAAATATTTCAT--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004134 39 +  60714840 ACTAAAAATATTCCTGCATGGATGTTCCAAATATCTCAT--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102775332 41 - 106955855 ACTAAAAATATTCCTGCCTAGATGTTCCAAATATTTCATGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60062686 41 +  64156825 ACTAAAAATATTCCTGCATAGATGTTTCAAATATTTTATGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55086129 41 +  59248254 ACTAAAAATATTCCTGCATAGATGTTTCAAATATTTTATGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47220234 41 +  51301725 cctggaGGCCCACTGGCCCTGAGGTTTTAAATACAtcataa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890222 41 +  50890351 ACCAAAAATATTCCTGCATCGATGTTTCAAATATTTTATGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45541609 41 +  49145316 CCTGGACACACTCTTGCTTCCATGCTCCAAACGTCTCAAAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102997935 39 + 122678785 AATAAACA-AAGCTTGTATGTGTGTT-CAAACATTTCATAA
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3714357 23 + 145441459 I

a score=-11702.000000
s hg38.chr19_GL949751v2_alt    193944 15 +   1002683 ------------G---ATAGAAAAAAAC-TC
s panTro4.chr19              59125722 15 +  63644993 ------------G---ATAGAAAAAAAA-CT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004173 14 +  60714840 ------------G---ATAGAAGAAAA--CT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102775373 14 - 106955855 ------------C---ATAGAAAAAAA--CT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60062727 13 +  64156825 ------------G---ATAGAAAAAACT---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55086170 13 +  59248254 ------------G---ATAGAAAAAACT---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47220275 15 +  51301725 ------------atttaaagtaaaatc----
i papAnu2.chr19             C 0 I 69
s chlSab2.chr6               46890263 14 +  50890351 ------------T---ATAGAAAAAAACT--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45541650 13 +  49145316 ------------G---ATGGAGAGAGCC---
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3714380 13 + 145441459 ------------G---TGAGGAAATGTC---
i mm10.chr7                 I 23 C 0
s canFam3.chr1              102997974 25 + 122678785 GCTTGAAAAGGCA---AAAGAAATATTC---
i canFam3.chr1              C 0 C 0

a score=61256.000000
s hg38.chr19_GL949751v2_alt    193959 44 +   1002683 CCATGA-ATAC-TGAA------------------GTTTGTAA-------ATGCGTATTGAAATTACGTGCC
s panTro4.chr19              59125737 44 +  63644993 CCATGA-ATAC-TGAC------------------GTTTGTAA-------ATGCGTGCTGACATTACATGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004187 44 +  60714840 CCACGA-ATAC-TGAC------------------GTTTGTAA-------ATGTGTGCCGACATTACGTGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102775387 44 - 106955855 GCATGA-ATAC-TGGA------------------GTTTGTAA-------ATGCGTGCTGACATTACGTGCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60062740 44 +  64156825 CCATGA-ATAC-TGAA------------------GTTTGTAA-------ATGTGTGCTGACATTACGTTTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55086183 44 +  59248254 CCATGA-ATAC-TGAA------------------GTTTGTAA-------ATGTGTGCTGACATTACGTTTC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               46890277 44 +  50890351 CCATGA-ATAC-TGAA------------------GTTTGTAA-------ATGCGTGCTGACATTACGTTTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45541663 45 +  49145316 CAAAGG-ACGCTTTAC------------------ATTTGTAT-------GTGGGGACTGACACTAAGTGCT
i calJac3.chr22             C 0 I 24
s mm10.chr7                   3714393 52 + 145441459 CCAGAACATGG-TAAT------------------GTTCACAGGCATTGCATAGATTCTGAGACCAATTGCC
i mm10.chr7                 C 0 I 6
s canFam3.chr1              102997999 49 + 122678785 ACAAGT-ATAT-TCACATGGACCCCTCTTTCTGGGTTTCTCA-------TTGGGAGAT-------------
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47220290 69 +  51301725 I

a score=6667.000000
s hg38.chr19_GL949751v2_alt    194003 2 +   1002683 CC
s panTro4.chr19              59125781 2 +  63644993 CC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004231 2 +  60714840 CC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102775431 2 - 106955855 CC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60062784 2 +  64156825 CC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55086227 2 +  59248254 CC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47220359 2 +  51301725 TC
i papAnu2.chr19             I 69 C 0
s chlSab2.chr6               46890321 2 +  50890351 CC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45541732 2 +  49145316 GC
i calJac3.chr22             I 24 C 0
s mm10.chr7                   3714451 2 + 145441459 TC
i mm10.chr7                 I 6 C 0
s canFam3.chr1              102998048 2 + 122678785 CC
i canFam3.chr1              C 0 n 0

a score=1091059.000000
s hg38.chr19_GL949751v2_alt    194005 369 +   1002683 TGGAACCGGT---TTTCTAAACTG-ACACC-CCTGTGTGTTTGGGTTCCCTCTGGCTGGTGCCCTGAGCCCACCCTCGG-------------------TCGACCCA-----------------TGGGTCCC------CCGCTTCCCTACTCACCAGATGTCCTGTGTTTGCTGTGACGCTGACGTCggaggaggaggaa------gaggaggaggaagagcagcaggacgaAGGCCACCGAGACCCCAATCAAAACCTCCAGGTATCTTCCCAGACCTTGA-CATGA-GGACGTCAGGAGTGG-G--AATGAtgtcattgatgtgagcacctactgtgtg-caggcgcgagccaggtcttt-ccttcgtgacctccaaccctcacaagcagtcgtgcaacatggaattg-----ccac--ccgtacaacccatttc
s panTro4.chr19              59125783 369 +  63644993 TGGAACCGGT---TTTCTAAACTG-ACACC-CCTGTGTGTTTGGGTTCCCTCTGGCTGGTGCCCTGAGCCCACCCTTGG-------------------TCGGCCCA-----------------TGGGTCCC------CCGCTTCCCTACTCACCAGATGTCCTGTGTTTGCTGTGACGCTGACGTCggaggaggaggaa------gaggaggaggaagagcagcaggaCGAAGGCCACCGAGACCCCAATCAAAACCTCCAGGTATCTTCCCAGACCTTGA-CATGA-GGACGTCAGGAGTGG-G--AATGACGTcattgatgtgagcacctactgtgtg-caggcgcgagccgggtcttt-ccttcgtgacctccaaccctcacaagcagtcgtgcaacatggaattg-----ccac--ccgtacaacccatttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004233 364 +  60714840 TGGAACCGGT---TTTCTAAACTG-ACACC-CTTGTATGTTTGGGTTCCCTCTGGCTGGCGCCCTGAGCCCACCCTTGG-----------------------CCCA-----------------TGGGTCCC------CTGCTTCGCTACTCACCCGATGTCCTGCGTTTGCTCTGACGCTGACGTCggaggaggaggaa------gaggaggaggaggagcagcaggaCGAAGGCCACCGATACCCCAATCAAAATCTCCAGGTATCTTCCCAGACCTTGA-CATGA-TGACGTCAGGAGTGG-G--AATGACGTcattgatgtgagcacctactgtgtg-caggcgcgtgctgggtcttt-ccttcatgagctccaaccctcacaagcagtcgtgcaacatggaattg-----ccgc--cc-cacaacccatttc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102775433 364 - 106955855 TGGAACCAGT---TTTCTAAACTG-ACACC---TGTGTGTTTCGGTTCCCTCTGGCTGGTGCTCTGAGCCCACCCTCGG-------------------TCGGCCCA-----------------TGGGTCCC------CCGCTTCCCTACTCACCAGATGTCCTGTGTTTGCTCTGACGCGGACGTCggaggaggaggaa------gaggaggaggaagagcagcaggacgaAGGCCACCGAGACCCCAATCAAAACCTCCAGGTATCTTCCCAGACCTTGA-CAT----GACGTCAGGAGTGG-G--AATGACGTcattgatgtgagcacctactgtgtg-caggcgcgagccaggtcttt-ccttcatgacctccagccctcacaagcagtcgtgcaacatggaattg-----ccgc--ccccacaacccatttc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60062786 358 +  64156825 TGGAACCGGT---TTTCTAAACTG-ACACC-CCGGTGAGTTTGGGTTCCCTCTGGCTGGTG---------CACCCTCCG-------------------TCGGCCCA-----------------TGGGTCCC------ACAATTCCCTACTCACCCGATATCTTGTGTTTGCTCTGACGCTGACGTCggaggacgaggaa------gaggaggaggaagagcagcaggaCGAAGGCCACCGAGACCCCAATCAAAGCCTCCAGGTATCTTCCCAGACCTTGAGCATGA-TAA---CAGGAGTGG-G--AATGACGTCACTGATGtgagcacctactgtgtg-caggtgcgtgccaggtcttt-ccttcaagacctacaacccttacaagcagttgtgcaacatggaattg-----ccgc--ccccacaacccatttc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55086229 358 +  59248254 TGGAACTGGT---TTTCTAAACTG-ACACC-CCGGTGAGTTTGGGTTCCCTCTGGCTGGTG---------CACCCTCCG-------------------TCGGCCCA-----------------TGGGTCCC------ACAATTCCCTACTCACCCGATATCTTGTGTTTGCTCTGACGCTGACGTCggaggacgaggaa------gaggaggaggaaaagcagcaggacgaAGGCCACCGAGACCCCAATCAAAGCCTCCAGGTATCTTCCCAGACCTTGAGCATGA-TAA---CAGGAGTGG-G--AATGACGTCATTGACGTGAGCACCTACTGTGTG-CAGGTGCGTGCCAGGTCTTT-CCTTCAAGACCTCCAACCCTTACAAGCAGTTGTGCAACATGGAATTG-----CCGC--CCCCACAACCCATTTC
i macFas5.chr19             C 0 I 31136
s papAnu2.chr19              47220361 365 +  51301725 TGGAGCAGTT---TTTCTAAGCTG-AGTTT-CCTGTGTGTTTGGGTTCCCTTTAGCTGGTGCCCTGAGCCCACCCTCGG-------------------TCAGCCCA-----------------CGGGTCAC------CCCATTCCCTACTCACCCGATGTCCTGTGTTTGCTCTGATGCCGATGtcggaggaggaagaa------gaggaggaggaagagcagcagGATGAAGGCCACTGAGACCCCGGTCACAACCCCCAGGTGCCTTCCCAGACCTTGAGCGTGA-TGACGTCAGGAATGG-G--TATGACGTCATTGAtgtgagcacctactgtgtg-caggcgCGAGCTAGGTCTTT-CCTTCATGAGCTCCAACCCTCAC-AGCAGTCGTGCAACATGGGATTG-----CCAA--CCCC----CCAATTTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890323 358 +  50890351 TGGAACTGGT---TTTCTAAACTG-ACATC-CCTGTGTGTTTGGGTTCCCTCTGGCTGGTA---------CACCCTCCG-------------------TCGGCCCA-----------------TGGGGTCC------CCACTTCCCTGCTCACCCGATATCTTGTGTTTGCTCTGACGTTGACGTCggaggacgaggaa------gaggaggaggaagagcagcaggatgaAGGCCACCGAGACCCCAATCAAAGCCTCCAGGTATCTCCCCAGACCTTGAGCATGA-TAA---CAGGAGTGG-G--AATGACGTcattgatgtgagcacctactgtgtg-caggcgcgtgccaggtcttt-ccttcaagacctccaacccttacaagcagttgtgcaacatggaattg-----ccgc--ccccacaacccatttc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45541734 376 +  49145316 TAGAACAGTT---TCTCAAAGCTGCGTTTT-CCCAGCAGTTTGGATTCCCTCTGGCTGGTGCCCTGAGCCCACCCTTGG-------------------TTGGCCCA-----------------CGGGGTCC------CCCCTTCTATACTCACCTGATGTCCAGTGTTTGCCCTGACGCTGATGTCggaggacgaggaagaggaggaggaggaggaagagcagcaggaTGAAGGTCACTGAGACCCCGGTCACAACCCCCAGGTTCCTTCCCAGACCTTGAGCATGA-GGACGTCAGGAATGG-G---GTGGTGTtactgat-tgagcgcctactgtgtg-caggtgactgctcggcctct-tattcaccaccttcaacccccacta-cagtcgagcagcgcggaattg-----acacatccaccccacccacttt
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3714453 399 + 145441459 TGTGATCTGCACGTTTCTAAGCTA-CCCTG-CCCCAGGTTGAGCTTTCCCTATGGCTGGTG-TCTGAGCGCCTGCTTCGATGTTCACAGGGAGACACACCACCTCC-----------------TGAGACCCAAGTTACACATACCCTCCTCACCATCTTTCCTGAATTTTCCCCGATGTCTTCGTCGAAGAAGAATGAA------GATGAAGATGAAGAGGAACAGGATGAAGGCCACAGACACTCCAATGAGAGCCTTCAGGTACATATGCAGTCCTGAGGCACAAGTGACATCATTAGTGGAG--ACCTTTGCTGCTTACctgagcacctactgtgtgacaggctcatgctgggtctctgcacacaTCATCCCCCATCTTTACAA----TCATGTACCATGGAATTGTGTCTTTTc--ctgtccagccagt---
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19702859 387 - 122678785 TGGAA---GT---GTCCTACATCG-GCCTTTCCCACCTCTCTGGGTTCCCTCTGGCTGCTGCCCTGAGCCCACCCTGGG-------------------TCAGCCCACAGAGCACCACCACCCCTGGGGTGC------CTCAGCCCCTTCTTACTTGACTTCCTGCATTTGCCCCGACGTTGCTGTCGGACCAGGAAGAG------GATGAGGAGGCAGAGCATCAGGATGAAGGCCACCGAGGACCCGATGAGGACGTACAGGTACCAGCTAGGACCTTGGGCAGGAGCTATACCATGAATGA-GCCAGTGATTCCATtttactgagcacctactgtgtgccaggcacctgctgggctctg-tgcttgc-acctgtgactctgacaa-tgatcatgcagcaggggattg-----ctgt--ccctcccacctgctcc
i canFam3.chr1              I 125 C 0

a score=99128.000000
s hg38.chr19_GL949751v2_alt    194374 43 +   1002683 acagatgcacaaactgaggctcagagcagggagtcgcctgccc
s panTro4.chr19              59126152 43 +  63644993 acagatgcacaaactgaggctcagagaggggaatcgcctgccc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004597 43 +  60714840 acagatgcacaaactgaggctcagagcgggtagtcgcctgccc
i ponAbe2.chr19             C 0 I 323
s nomLeu3.chr10             102775797 43 - 106955855 acagatgcacaaactgaggctcagagcggggaatcgcctgccc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60063144 43 +  64156825 acagatgcacaaactgaggctcagagaagtgaaccgcctgtca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47220726 43 +  51301725 ACAGaggagcaaactgaggctcagagaggagaatCGCCTGCCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890681 43 +  50890351 atagatgcacaaactgaggctcagagaggggaatcgcctgccc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542110 42 +  49145316 acagacaaa-aaactgaggctcagagaggggagtcgcctgccc
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3714852 10 + 145441459 ---------------------------------tcacctgact
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19703246 42 - 122678785 acagac-tgtaaactgaggcacagaggggtcaatcacgtgtcc
i canFam3.chr1              C 0 C 0
e macFas5.chr19              55086587 31136 +  59248254 I

a score=3893.000000
s hg38.chr19_GL949751v2_alt    194417 2 +   1002683 ca
s panTro4.chr19              59126195 2 +  63644993 cg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102775840 2 - 106955855 cg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60063187 2 +  64156825 ca
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47220769 2 +  51301725 CA
i papAnu2.chr19             C 0 I 501
s chlSab2.chr6               46890724 2 +  50890351 ca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542152 2 +  49145316 ca
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19703288 2 - 122678785 ca
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3714862 0 + 145441459 C
e ponAbe2.chr19              56004640 323 +  60714840 I
e macFas5.chr19              55086587 31136 +  59248254 I

a score=4683.000000
s hg38.chr19_GL949751v2_alt    194419 2 +   1002683 gg
s panTro4.chr19              59126197 2 +  63644993 gg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102775842 2 - 106955855 gg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60063189 2 +  64156825 ga
i rheMac3.chr19             C 0 I 41
s papAnu2.chr19              47221272 2 +  51301725 GG
i papAnu2.chr19             I 501 C 0
s chlSab2.chr6               46890726 2 +  50890351 gg
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45542154 2 +  49145316 gg
i calJac3.chr22             C 0 I 1
s canFam3.chr1               19703290 2 - 122678785 gg
i canFam3.chr1              C 0 C 0
e mm10.chr7                   3714862 0 + 145441459 C
e ponAbe2.chr19              56004640 323 +  60714840 I
e macFas5.chr19              55086587 31136 +  59248254 I

a score=38361.000000
s hg38.chr19_GL949751v2_alt    194421 30 +   1002683 -cctccagcgaggaagcggcagagctgggaa
s panTro4.chr19              59126199 30 +  63644993 -cccccagcaaggaagcagcagagctgggaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102775844 30 - 106955855 -cccccagccaggaagcggcagagctgggaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47221274 30 +  51301725 -CCCCACGGTGGGATGCAGCCGAGCTGGGAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890729 30 +  50890351 -cccccagccaggaagtggcagagctgggaa
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45542157 30 +  49145316 -cccccagctaggcagcagcagagctgggaa
i calJac3.chr22             I 1 C 0
s mm10.chr7                   3714862 15 + 145441459 -----------ggaagtggcagagtt-----
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19703292 31 - 122678785 tcgtccagtgtggaggtggcagggctgggac
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56004640 323 +  60714840 I
e macFas5.chr19              55086587 31136 +  59248254 I
e rheMac3.chr19              60063191 41 +  64156825 I

a score=191697.000000
s hg38.chr19_GL949751v2_alt    194451 136 +   1002683 gggagcccgggag--------tctgacctg---------------------cagcccttgttcct--------gcaccaGAGCCGAGACCCG-GAGCTGC-----AGGGAAAGAGCCTGACC----------GTCCTGAACCACGG---------------------------------CCCTGCTCCCCTCCCCTGCCCC----AGGTCACC------GTCACTGCTGCAG
s panTro4.chr19              59126229 136 +  63644993 gggagctcgggag--------tctgacctg---------------------cagcccttgttcct--------gcaccaGAGCCAAGACCCG-GAGCTGC-----AGGGAAAGAGCCTGACC----------ATCCTGAACCACAG---------------------------------CCCTGCTCCCCTCCCCTGCCCC----AGGTCACC------GTCACTGCTGCAG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             102775874 136 - 106955855 gggagcccgggag--------tctgacctg---------------------cagcccttgttcct--------tcACCAGAGCTGAGCCCCG-GAGCTGC-----AGGGAAAGAGCCTGACC----------TTACTGAATCACTG---------------------------------CCCTGCTCCCCTCCCCTGCCCC----AGGTCACC------GTCTCTGCTGCAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60063232 137 +  64156825 gagaaccgggaag--------tctgacccg---------------------cagcccttgttccc-------tgcaccgGAGCTGAGCCCCA-GAGATGC-----AGGGAAAGAACCTGACC----------GTCCTGAACCACAG---------------------------------CCCTGCTCCCCTCCCCTGCCCC----AGGTCACC------GTCACCGCTGCAG
i rheMac3.chr19             I 41 C 0
s papAnu2.chr19              47221304 137 +  51301725 GTGAACCCGGGAG--------TCTGACCTG---------------------CAGCCCTTGTTCCC-------AGCACCAGAGCCGAGCCCCA-GAGATGC-----AGGGAAAGTGCCTGAAT----------GCCCCAAACCATGG---------------------------------CCCTGCTCCCCTCCTCCGCCCC----AGGTCACC------GTCACTGCTGCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890759 127 +  50890351 gggaacctgggag--------tctgacccg---------------------cagcccttgttccc-------agcaccaGAGCTGAGCCCT----------------GGAAAGAGCCTGACC----------GTCCTGAACCACGG---------------------------------CGCTGCTCCCCTCCCCTGCCCC----AGGTCACC------GTCACTGCTGCAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542187 163 +  49145316 gggaacctgggAG--------TTTGATCTGCTGAGAGCCAGGGAAGGAGGACAGCCCTTGTTCCC-------TGCACCTGAGCTGAGCCCTG-GAGCTGC-----AGGGAAAGAGCGTGACC-----------TACTGAACCAAAG---------------------------------CCCTGCTCCCCTCCTCTGCCCC----AGGTCACCGTCACTGTCACTGCTGCAG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3714877 122 + 145441459 --gaacccagaat-------ctctgacttc---------------------cagccctgctctct--------gcaccaGAGCTGAGAGCAATGAGTTG--------GAGAGGAGTGTGAAT----------GTCGTG--CTATGG---------------------------------CTGTGTATCCCACCCTTACTC-----------AT------GTCGCTACAGC--
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19703323 203 - 122678785 aggaagttgggatgaaggttccctgtgctc---------------------tACTCATGCCTCCCCTGTGAGGTCACCA-CTCCGAGGCTCT-GGGCTCCTCATTTGGGGCAGGATCTGTCCCAGCATCTTCATCCTGAGCTGAGGGTCCTTCCAGACCTCAACACCCCCAGCCATCAACTTCCCTCTCCTCCCCTCCTCCTACAATATCACT------GTCATTGCTGCAG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56004640 323 +  60714840 I
e macFas5.chr19              55086587 31136 +  59248254 I

a score=186268.000000
s hg38.chr19_GL949751v2_alt    194587 107 +   1002683 GTGGGACGGGACAGGCCCCTGT---GGAATCG-GGTCTGGGAGG-TTCCCTGGGAGGCCTCCTCTCCCAG--GAGGTCACAGCTGGGGgtcagagctgaaaggaactttcccac
s panTro4.chr19              59126365 107 +  63644993 GTGGGACAGGACAGGCACCTGC---GGAATCG-GGTCTGGGAGG-TTCCCTGGGAGGCCTCCTCTCCCAG--GAGGGCACAGCTGGGGgtcagacctgaaaggaactttcccac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56004963 105 +  60714840 GTGGGACAGGACAGGC-CCTGC---AGAATCA-GGTTTGGGAGG-TTCCCT-GGAAGCCTCCTCTCCCAG--GAGGTCACAGCTGGGAgtcagagctgaaaggagctttcccac
i ponAbe2.chr19             I 323 C 0
s nomLeu3.chr10             102776010 107 - 106955855 GTGGGACAGGACAGGCCCCTGC---GGAGTCA-GGTCTGGGAGG-TTCCCTGGGAGGCCTCCTCTCCCAG--GAGGTCACAGCTGGGAgtcagaactgaaaggaactttcccac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60063369 107 +  64156825 GTGGGACAGGACAGGCCCCTGT---GGAATCG-ACTCTGGGAGCCTTCCCT-GGAGGCCTCCTCTCCCAG--GAGGTCACAGCTGGGAgtcagagctgaaaggaacgttcccac
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47221441  32 +  51301725 GTGGGACAGGACAGGCCCCTGA---AGAA-------------------------------------------------------------------------------TCCCAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890886 108 +  50890351 GTGGGACAGGACAGGCCCCTGC---GGAATCG-GGTCTGGGAGGCTTCCCTGGGAGGCCTCCTCTCCCAG--GAGGTCACAGCTGGGAgtcagagctgaaaggaacgttcccac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542350 108 +  49145316 TTGGGACAGGACAGGCTCCTGA---GGAATCA-GGCCTGGGAGGCTTCCCTAGGTGGCCTCCTCTCTCAG--GAGGTCACAGCTGGGAgtcagagctaaaaggaactttcccac
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3714999  91 + 145441459 GTGGCTCTGGGC-----CCTGC---AGAATCA-GATTCTGGAGG-------------CCTTTTCTGTCAGGAGAGGTCACCACCAAG-GCCAGCACAGaaacaaacaaacaaac
i mm10.chr7                 C 0 I 106
s canFam3.chr1               19703526 103 - 122678785 ------AGGGACAGACACCTTCCCTAGAATCATGATTTGGGTAACTTCCCCATGAGCCCTCCTCTCCCag--gaggtcagagccatg-gtcagaacc--aaggacaaatctaat
i canFam3.chr1              C 0 C 0
e macFas5.chr19              55086587 31136 +  59248254 I

a score=352036.000000
s hg38.chr19_GL949751v2_alt    194694 167 +   1002683 c--c----------------------acaggcctctctcctttacacttggagaaactgaggcccaggcaggggaggggcctgtccacatcaccacctccagaggagcctgaacctaggacagaacccacccctgcctcccCTGGACCCCGCCCATCTCCCACT--CAGAGCCCCTCACTCACGATTCTGAGG
s panTro4.chr19              59126472 167 +  63644993 c--c----------------------gcaggcctctctcctttacacttggagaaactgagtcccatgcaggggaggggcctgtccacatcgccacctccagaggagcctgaacctaggacagaacccacccctgcctcccCTGGACCCCGCCCACCTCCCACT--CAGAGCCCCTCACTCGCCACTCTGGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005068 165 +  60714840 c--c----------------------gcaggcctctctcctttacacttggagaaactgaggcccaggcagggga-gggcccgtccacatcgccacctccagaggagcctgaacctaggacagaacccactcctacctcccCTGGACCCCGCCCACCTCCCACT--CAGAGCCCC-CACTCACCACTCTGAGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102776117 166 - 106955855 c--c----------------------gcaggcctctctcctttacacttggagaaactgaggcccaggcaggggaggggcctgtccaCATCGCCACCTCCAGAGGAGCCGGAACCTAGGACAGAACTGACCCCCGCCTCCCCAGGACCCCGCCCACCTCCCACT--CAGAGCCCC-CACTCACCACTCTGGGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60063476 166 +  64156825 c--c----------------------gcaggcttctttcctttacacctggagaaactgaggcccaggcagcggaggggcctgtccacgtcaccatctccagaggggcctgaacctaggacagaagccacctctgcctcccCAGGACCCCGCCCACCTTCCTCT--CAGAGCCCC-CACTCACCACTCTGGGG
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47221473 168 +  51301725 CTGT----------------------GCAGGCCTCTCTCCTTTACacctggagaaactgaggcccaggcaggggaAGGGCTTGTGCACATCACCATCTCCAGAGGAGCCTGAACCTAGGACAGaacccacccctgcctccccaggaccccgtccacctcccact--cagagcccc-cactcaccactcTGGGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               46890994 166 +  50890351 c--c----------------------gcaggcttctttcctttacacctggagaaactgaggcccaggcaggggaggggcctgtccacgtcaccatctccagaggggcctgaacctaggacagaagccacccctgcctcccCGGGACCCCGCCCACCTTCCTCT--CAGAGCCCC-CACTCACCACTCTGGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542458 128 +  49145316 c--ct---------------------gcaggcctctctcctttacacttggagaaactgaggcctaggcaggggaggggcct----------------------------------------GAACTGAGCCCTGCCTCCCCTGGACCCCACCCACCTCCCGCT--CAGAGACCCCGACTAACCACTGTGGGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715196 173 + 145441459 ----CCAAATAAGTTAAGACATGAGGGCAGGTTTCT---CTTTATACTCAGAGGAACAGCAGCCTA-GCAAGAGAAGGACTTGACCAAGTCAAGCTATCTAGAGGCAGCTGTATCAAGACTCTAACTAGCTATTG-TTCATCTGA-----GCACATATTTTAA---CAAACTGTT-TATTAGTC-TTCTGAG-
i mm10.chr7                 I 106 C 0
s canFam3.chr1               19703629 160 - 122678785 ---------------------ctgggccatgactctctcttttacacttggggaaactgaggcccacacatgggaggggcatgtccaagacagggaatgtagagggtcatgaagtgagggtgtaaatcagccctgatccccaTGA--CCCACCCACCACCTCCTGACAGAGACCCTCACTTAC----------
i canFam3.chr1              C 0 C 0
e macFas5.chr19              55086587 31136 +  59248254 I

a score=297134.000000
s hg38.chr19_GL949751v2_alt    194861 109 +   1002683 GCCTGACCCTGGGGGGTTAAGGGGCTGGTCCTCAGGACCTCCT-GGGTCAGGACAGGG--AGGTGAAGGCTGGGGCTGTCTTGCCCCCCACATCAGCCCGGCTCCTCCTCCT--
s panTro4.chr19              59126639 109 +  63644993 GCCTGACCCTGGGGGGTTGAGGGGCTGGTCCTCAGGACCTCCT-GGGTCAGGACAGGG--AGATGAGGGCTGGGGCTGTCTTGCCCCCCACATCAGCCCGGCTCCTCCTCCC--
i panTro4.chr19             C 0 I 3
s ponAbe2.chr19              56005233 108 +  60714840 GCCTGACCCTGCGGGGTTGAGGGGCTGGTCCTCAGGGCCTCCT-GGGTCAGGACAGGT--AGGTGAGGGCTGGGGCTGCCTTGCCCCCCACATCAGCCTGGCTCC-CCTCCC--
i ponAbe2.chr19             C 0 I 3
s nomLeu3.chr10             102776283 109 - 106955855 GCCTGACCCTGAGGGGCTGAGGGGCTGGTCCTCAGGGCCTCCT-GGGTCAGGATGGGG--AGGTGAGGGCTGGGGCTGCCTTGCCCTCCACGTTAGCCGGGCTCCTCCTCCC--
i nomLeu3.chr10             C 0 I 10613
s rheMac3.chr19              60063642 109 +  64156825 GTCCGACCCCGTGGGGGTGAGGGGCTGGTCCTCAGGGCCTGCT-GGGTCAGGATGGGA--AGGTGAGGGCTGCGGCTGCCCTGCTCCCCACGTCAGCCCGGCTGCTCCTCCC--
i rheMac3.chr19             C 0 I 3
s macFas5.chr19              55117723 109 +  59248254 GCCTGACCCTGAGGGGTTGAGGGGCTGGTCCTCAGGACCTCTG-GGGTCAGGACAGGG--AGGTGAGGGCTGAGGCTGCCTTGCTCCCCACATGAACCCAGCTGCTTTTCCC--
i macFas5.chr19             I 31136 I 3
s papAnu2.chr19              47221641 109 +  51301725 GTCCGACCCCGTGGGGGTGAGGGGCTGGTCCTCAGGGCCTGCT-GGGTCAGGATGGGA--AGGTGAGGGCTGGGGCGGCCCTGTTCCCCACGTCAGCCCGGCTGCTCCTCCC--
i papAnu2.chr19             C 0 I 3
s chlSab2.chr6               46891160 109 +  50890351 GCCTGACCCTGAGGAGTTGAGGGGCTGGTCCTCAAGGCCTTCT-GGGTCAGGACAGAG--AGGTGAGGGCTGGGGCTGCCCTGCCCCCCATATCAGCCTGGCTCCTCCTTCC--
i chlSab2.chr6              C 0 I 4
s calJac3.chr22              45542586 109 +  49145316 ATCTGGCTCCATGGGAGTGAAAAGCTGGTCCTCAGGGACTGCT-GGGTCAGGATGGGG--ACATGAGGATTGGGGCTGACCTGCTCCCCATGTCAGTCCGGCTGCTCCTCCC--
i calJac3.chr22             C 0 I 3
s mm10.chr7                   3715369 105 + 145441459 GCCTGACTCCATGCAGGTGACAGG--GGCCATGCCGAGCTTTA-GGGGTAAGATAGGG--AACTGAGTGTTTGTGTT-CCCTGCTTTCAACTTCC-CACAACTGCCCCACCC--
i mm10.chr7                 C 0 I 3
s canFam3.chr1               19703789  76 - 122678785 -----------------------------CCTCAGAGACTCCTGGGGTCAGTAGAGGGTCAGGGGAGGGCCTGTGTG-------CTTCCACTGCA--CCTGCTGCCCCTCCCCC
i canFam3.chr1              C 0 C 0

a score=205943.000000
s hg38.chr19_GL949751v2_alt    194970 71 +   1002683 GGCTGGGCCCCAACATCTCCCTCTGCCTCGA-CCCCCC-ACT--CTTCACCAGCCCAGCCTCAGAGCCCC------------------TGGGA
s panTro4.chr19              59126751 71 +  63644993 GGCTGGGCCCCAACATTTCCCTCTGCCTCAA-CCCCCC-GCC--CCTCACCAGCCCAGCCTCAGAGCCCC------------------TGGGA
i panTro4.chr19             I 3 C 0
s ponAbe2.chr19              56005344 71 +  60714840 GGCTGGGCCCCAACATCTCCCTCTGCCTCGA-ACCCCC-GCC--CCTCACCAGCCCAGCCTCAGAGCCCC------------------TGGGA
i ponAbe2.chr19             I 3 C 0
s nomLeu3.chr10             102787005 72 - 106955855 GGCTGGGCCCCAACATCTCTCTCTGCCTTGA-CCCCCCTACT--CTTCACCAGCCCAGTCTCAGAGCCCC------------------TGGGA
i nomLeu3.chr10             I 10613 C 0
s rheMac3.chr19              60063754 72 +  64156825 GGCTGGGCCCCAACACCTCCCTCTGCCTCGCGCCCCCC-GCC--CCTCACCGGCCCAGCCTCGGAGCCCC------------------TGGGA
i rheMac3.chr19             I 3 I 81543
s macFas5.chr19              55117835 72 +  59248254 GGCTGGGCCCCAACACCTCCCTCTGCCTTGAACCCCCC-ACG--CCTCACCAGTCCAGCCTCAGAGTCCC------------------TGGGA
i macFas5.chr19             I 3 C 0
s papAnu2.chr19              47221753 70 +  51301725 GGCTGGGCCCCAACACCTCCCTCTGCCTCGA--CCCCC-GCC--CCTCACCGGCCCAGCCTCAGAGCCCC------------------TGGGA
i papAnu2.chr19             I 3 C 0
s chlSab2.chr6               46891273 72 +  50890351 AGCTGGGCCCCAACACCTCCCTCTGCCTTGAACCCCCC-ACT--CCTCAGCAGCCCAGCCTCAGAGTCCC------------------TGGGA
i chlSab2.chr6              I 4 C 0
s calJac3.chr22              45542698 65 +  49145316 GGCTGGGCCCCATCATCTCCCACTGCCTCGA-CCTCCT-GCC--CCTCA-----CCAGCCTCAGAG-CCC------------------TGGGA
i calJac3.chr22             I 3 I 7
s mm10.chr7                   3715477 81 + 145441459 TGATGAGCCTAAATACTTCTCTCTGAAT----CTCCCT-GCT-------GTAGCCCAACCTCTGAGCCCCAGCTTCAGTGGTCTCTGGTGAGA
i mm10.chr7                 I 3 I 21
s canFam3.chr1               19703865 67 - 122678785 AGATGGGTCCCCACCCCTCCCTATCCCATGAACACCCA-GCCTCCTCCACCAGCCGAG-------ACCCC------------------TGGTG
i canFam3.chr1              C 0 C 0

a score=9088.000000
s hg38.chr19_GL949751v2_alt    195041 20 +   1002683 --CACAAGCC--CGT---------------------------CCTTGAGGG
s panTro4.chr19              59126822 20 +  63644993 --CACAAGCC--CGT---------------------------CCTTGAGGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005415 20 +  60714840 --CACAAGCC--CGT---------------------------CCTTGAGGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787077 20 - 106955855 --CACAAGCC--CGT---------------------------CCTTGAGGG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55117907 20 +  59248254 --CACAGGCC--TGT---------------------------CCTTGAGGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47221823 42 +  51301725 -------GCC--TGTGGCCCCTCCTGTGGCTCTGCCTGGCTCCCTGGAGGG
i papAnu2.chr19             C 0 I 20
s chlSab2.chr6               46891345 20 +  50890351 --CACAAGCC--TGT---------------------------CCTAGAGGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542770 33 +  49145316 --CCCCTGTC--TGT--------------CTCTGCCCAGCCCTCTGGAGGG
i calJac3.chr22             I 7 I 19
s mm10.chr7                   3715579 13 + 145441459 --TACAAGCTGAAGT------------------------------------
i mm10.chr7                 I 21 I 2
s canFam3.chr1               19703932 18 - 122678785 CCCATCGGCC--CCC---------------------------TTTCA----
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60063826 81543 +  64156825 I

a score=117156.000000
s hg38.chr19_GL949751v2_alt    195061 47 +   1002683 GAGGGGAGTGGGATCCTTTGGGAGACTCA-GACTG----C-------CCTGGGGGAGGC
s panTro4.chr19              59126842 47 +  63644993 GAGGGGAGTGGGATCCTTAGGGAGACTCA-GACTG----C-------CCTGGGGGAGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005435 47 +  60714840 GAGGGGAATGGGATCCTTAGGGAGACTCA-GACTG----C-------CCTGGGGGAGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787097 47 - 106955855 GAGGGGAGTGGGATCCTTTGGGAGACTCA-GACTG----C-------CCCGGGGGAGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60145369 48 +  64156825 GAGGGGAATGGGATCCTCTGGGAGACTCAGGACTG----C-------CCTGCGGGAGGC
i rheMac3.chr19             I 81543 I 19
s macFas5.chr19              55117927 47 +  59248254 GAGGGGAATGGGAATCTTTAGGAGACTCA-GACTG----C-------CCTGGGGGAGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47221885 48 +  51301725 GAGGGGAATGGGATCCTCCGGGAGACTCAGGGCTG----C-------CCTGGGGGAGGC
i papAnu2.chr19             I 20 C 0
s chlSab2.chr6               46891365 47 +  50890351 GAGGGGAATGGGGTCCTTCGGGAGACTCA-GACTG----C-------CCTGGGGGAGGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542822 40 +  49145316 GAGTGGAACAGGATCCTCTGGGAGACCCGGGACTG----C-------CCAG--------
i calJac3.chr22             I 19 C 0
s mm10.chr7                   3715594 54 + 145441459 GATAGAAATGAGGACTGTGGTGGGCCAAG-AGCTG----CCAGGCAGCCTGGGGTGGGA
i mm10.chr7                 I 2 I 1
s canFam3.chr1               19703950 33 - 122678785 --------------TCTCTGAGAGACTGG-AACCAAAGCC-------CCTGGACG----
i canFam3.chr1              C 0 C 0

a score=15433.000000
s hg38.chr19_GL949751v2_alt    195108 12 +   1002683 GGCGCTCCCCAC
s panTro4.chr19              59126889 12 +  63644993 CGCGCTCCCCAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005482 12 +  60714840 CGCGCTCCCCAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787144 12 - 106955855 TGCGCTTCCCAA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55117974 12 +  59248254 CGTGCTCCCCAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47221933 12 +  51301725 CGTGCTCCCTCT
i papAnu2.chr19             C 0 I 5
s chlSab2.chr6               46891412 12 +  50890351 TGCGCTCCCCAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542862  4 +  49145316 --------CTGA
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715649 12 + 145441459 AATACTCCCTGC
i mm10.chr7                 I 1 I 2
e canFam3.chr1               19703983  0 - 122678785 C
e rheMac3.chr19              60145417 19 +  64156825 I

a score=167836.000000
s hg38.chr19_GL949751v2_alt    195120 54 +   1002683 GAGGCCTCAGTGACTCACCAGGTGTGGAGGGCGGCCCTGTGGGTGGGAGGCTGG
s panTro4.chr19              59126901 54 +  63644993 GAGGCCTCAGTGACTCACCAGGTGTGGAGGGCGGCCCTGTGGGTGGGAGCCTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005494 54 +  60714840 GAGGCCTCAGTGACTCACCAGATGTGGAGGGCGGCCCTGTGGGTTGGGGGCTGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787156 54 - 106955855 GAGGCCTCAGAGACTCACCAGGTGTGGAGGGCGGCCCTGTGGGTGGGGGGCTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60145436 54 +  64156825 GAGGCCTCAATGACTCACCCGGTGTGGAGGAGGAGCCTGTGGGTTGGGGGCTGG
i rheMac3.chr19             I 19 I 168
s macFas5.chr19              55117986 54 +  59248254 GAGGCCTCAGTGACTCACCAGGGGTGGATGGTGGCCCTGTGGGTGGGGGGCTGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47221950 54 +  51301725 CAGATCTCAGCGACTCACCAggtgtgggggtggagcctgtgggtggggggccgg
i papAnu2.chr19             I 5 C 0
s chlSab2.chr6               46891424 54 +  50890351 GAGGCCTCAGTGACTCACCAGGTGTGGAGCGTGGCCCTGTGGGTGGGGGGCTGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542866 54 +  49145316 GAGGCGTTAGTTACTCACCAGGTGTGGGGGTGGGACCGGTGGGTGGAGGGCTGG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715663 54 + 145441459 AGAGTACCTGATACTTACCACCTAGTGGCATGGACATTGTGGGTGGCGGGGTAG
i mm10.chr7                 I 2 C 0
s canFam3.chr1               19703983 54 - 122678785 GACGCCCCTGTAACTCACCAGCTGTTGGGCTGGATATTGTGGGTGGGGGACCAT
i canFam3.chr1              C 0 C 0

a score=255997.000000
s hg38.chr19_GL949751v2_alt    195174 178 +   1002683 AGCCTCCAGAGTGTCCT-G-GAAGGAGCACGGGAGGCGGGTGAGGGGCGGGGGCCGTCCATGGAGTGCACCCTTCCACT---CCCACTCTCCTGCTTCCGCCCAGTGGATTCCCTGGAACCATCTCTCTGCCCACCTGGTGCCTTCTGCATGCCAGGCAGGGGAGAAC--GGGTGGCCACGCCTA
s panTro4.chr19              59126955 178 +  63644993 AGCCTCCAGAGGGTCCT-G-GAAGGAGCACGGGAGGCGGGTGAGGGGCGGGGGCCGTCCATGGAGTGTACCCTTCCACT---CCCACTCTCCTGCTTCCGCCCAGTGGATTCCCTGGAACCATTTCTCTGCCCACCTGGTGCCTTCTGCATGCCAGGCAGGGGAGAAC--GGGTGGCCATGCCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005548 178 +  60714840 AGCCTCCAGAGGGTCCT-G-GAAGGAGCACAGGAGGCGGGTGAGGGGCTGGGGCTGTCCATGGAGGGCACCCTTCCACT---CCCACTCTCCTGCGTCTGCCCAGTGGATTCCCTGGAACCATTTCTCTGCCCACCTGGTACCTTCTGCATGCCAGGCAGGGCAGAAC--AGGTGGCCATGCCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787210 178 - 106955855 AGCCTCCAGATGGTCCT-A-GAAAGAGCACAGGAGGCGGGTGAGGGGCTGGGGCTGTCCATGGGGTGCACCCTTCCACT---CCCACTCTCCTGCATCCGCCCAGGGGATTCCCTGGAACCATTTCTCTGCCGACCTGGTACCTTCTGCATGCCAGGCAGGGGAGAAC--GGGTGGCCATGCCTA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55118040 176 +  59248254 AGTCTCCAGAGGGTCCT-G-CAAGGAGCACAGGAGGCCGGTGAGGGACTCGGGCCGTCCATGGAGTGCACCCTTCCACT---CCCACTCTCCT-CATCCGCCCAGTGGATCCCCGGGAACCATTCCTCTGCCCACCTGGTACCTTCTGCATGCCAGGCAAGG-AGAAC--GGGTGGCCATGCCTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47222004 177 +  51301725 ggtccccagagggtcctgg-gAATAAGCACAGGCAGGGAGTGAGGAGCTTTGG----TGCTGGAGTCCCCTCCTCCACTGAGACCCCTCCCTC-CACCTGCTCTGTGGCTTCTCCGGAACT-TCCTTCTGCTTACCTTTCACCTTTTGTGTCCCAGGAGATG-GGGCCAAGGGTGGGCATGCCTG
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46891478 176 +  50890351 AGCCTCCAGAGGGTCCT-G-CGAGGAGCAC-GGAGGCGGGTGAGGGACTGGGGCCGTCCATGGAGTGCACCCTTCCACT---CCCACTCTCCTGCATCTGCCCAGTGGATCCCCAGGAACCATTTCTCTGCCCACCTGGTACCTTCTGCATGCCAGGCAAGG-AGAAC--GGGTGGCCATGCCTA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45542920 175 +  49145316 GTCCACTGGAGGGTCCT-G-GGTAAGGAATGGGAGGAGGCAGAGGAGCT-GGGCCTTGCCTGAAGCCTCCACCTCAAAC---CAAATTTCTCCACATCAGCCCTGTGGCCCTCCTGT--CCCCTCCCCTACCCGCCTCTCCTCTTCATGATGCTGGCGATGCTGCTGA--GGGTGGGTGTGCCTG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715717 169 + 145441459 AGGTTTCGATGGGTCCTAG-GAAAGAGAACAAGAAGAGGACGAGGATTAGATGCAAGCCCAGGA-------TCCTCACTTGGTTCACTGTCCTCTATCTGCCCTGTAAACTCTGCAAGATACTGATAGTCGCTACTCCAAACCT---AGATTGCAGTAGAGG---ACT--GAGTGGACATTACTC
i mm10.chr7                 C 0 I 3
s canFam3.chr1               19704037 169 - 122678785 GGTGTCCAGAGGATCCT-GTGCAAAAAGACAGGAG------CGGGGGCAGGAGCTTCCCTTAGAGACCCTGTCTATGCTCACACCCCTCCTCTTCATTTACCCTGAGG-TCCCCAGGTACTCCTCCTCC-TCCACGTGGAAAATTCTG-GTGACGGGGGCGAGGGAAG--GGGCAGGAGTG----
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60145490 168 +  64156825 I

a score=5201.000000
s hg38.chr19_GL949751v2_alt    195352 7 +   1002683 GGAGAAC
s panTro4.chr19              59127133 7 +  63644993 GGAGAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005726 6 +  60714840 GGAGAA-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787388 7 - 106955855 TGAGAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60145658 7 +  64156825 GGAGAAC
i rheMac3.chr19             I 168 N 0
s macFas5.chr19              55118216 7 +  59248254 GGAGAAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47222182 5 +  51301725 GGTGC--
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46891654 7 +  50890351 GGAGAAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45543095 7 +  49145316 GGAGGGC
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715889 4 + 145441459 GGAG---
i mm10.chr7                 I 3 C 0
s canFam3.chr1               19704206 6 - 122678785 GGAGGG-
i canFam3.chr1              C 0 C 0

a score=72043.000000
s hg38.chr19_GL949751v2_alt    195359 30 +   1002683 CCCTGTTGGCCTCCTCCCCTCTG--AGGGCTG
s panTro4.chr19              59127140 30 +  63644993 CCCTGTTGGCCTCCTCCCCTCTG--AGGGCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005732 29 +  60714840 CCCTGTTGGCC-CCTCCCCTCTG--AGGGGTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787395 30 - 106955855 CCCTGTTGGCCTCCTCCCCTCTG--CGGGCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19               3686762 30 -  64156825 CCCCGTTGTCCTCCTCCCCTCTG--AGGGCTG
i rheMac3.chr19             N 0 I 28
s macFas5.chr19              55118223 30 +  59248254 CTCTGTTGGCCTCCTCCCCTCTG--AGGGCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47222187 30 +  51301725 CCCCACTGTCCTCCTCCCCTCTG--AGGGGTG
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               46891661 29 +  50890351 CCCTGTTGGCCT-CTCCCCTCTG--AGGGCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45543102 29 +  49145316 -CCCATTGTCCTCCTTCCCTCTG--AGGCCTG
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715893 31 + 145441459 CACTGCTAGCATTAATTCCTCTGCCAGGGAA-
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19704212 14 - 122678785 ----------------CAGTGTG--AAGGGTG
i canFam3.chr1              C 0 C 0

a score=53986.000000
s hg38.chr19_GL949751v2_alt    195389 27 +   1002683 GGTGCCCTCTGGCTAAGCCTCCC-TCAC
s panTro4.chr19              59127170 27 +  63644993 GGTGCCCTCTGGCTAAGCCTCTC-TCAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005761 27 +  60714840 GGTCCCATCTGGCTAAGCCTCCC-TCAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             102787425 27 - 106955855 GGTCCCCTCTGGCTAAGCCTCCC-TCAC
i nomLeu3.chr10             C 0 I 761
s macFas5.chr19              55118253 27 +  59248254 CGTCCCCTCTGGCTAAGCCTCCC-TCAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47222218 28 +  51301725 GTCCCCCTCTGGCTGAGCCTCCCATCAC
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               46891690 27 +  50890351 CGTCCCCTCTGGCTAAGCCTCCC-TCAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45543131 26 +  49145316 AGGCCGCTCTGGCTGAGCCTCCT-TCA-
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715924 27 + 145441459 ACTGTCTTCTGACAAAGCCATCT-TCCT
i mm10.chr7                 C 0 I 2
s canFam3.chr1               19704226 11 - 122678785 ----------------GACTCCC-TCAG
i canFam3.chr1              C 0 C 0
e rheMac3.chr19               3686792 28 -  64156825 I

a score=-2079.000000
s hg38.chr19_GL949751v2_alt    195416 12 +   1002683 AGCCTCC---CTCGG
s papAnu2.chr19              47222246 11 +  51301725 -GAcccc---cccAA
i papAnu2.chr19             C 0 I 7
s calJac3.chr22              45543157 12 +  49145316 -GACCCCGCTCCC--
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715953 12 + 145441459 TGTCTCC---TTAAT
i mm10.chr7                 I 2 C 0
s canFam3.chr1               19704237 11 - 122678785 AGCCCCT---CTCT-
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56005788  0 +  60714840 C
e nomLeu3.chr10             102787452 761 - 106955855 I
e chlSab2.chr6               46891717  0 +  50890351 C
e macFas5.chr19              55118280  0 +  59248254 C
e rheMac3.chr19               3686792 28 -  64156825 I
e panTro4.chr19              59127197  0 +  63644993 C

a score=634668.000000
s hg38.chr19_GL949751v2_alt    195428 202 +   1002683 TCCATCCCAGCC--GAGAGCTCTCCTGGGGGCCTGGGCCTGAGCTGAG----CCTTTGAGCTCAGAGAGGACGGGGTCA-GCGCCCTCACCTGAGACCACGAGCTCCAGGGGCTCACTGGGGTGAGACAGCAGGTGGGGGTTGGAGCTGTATGAGCCGTAGCACCTGTAGGTCCCCGCGTGGGCTGAGGTCACAGGACTCATGGGGAAT
s panTro4.chr19              59127197 199 +  63644993 TCCATCCCAGCT--GAGA--TCTCCT-GGGGCCTGGGCTTGAGCTGAG----CCTTTGAGCTCAGAGAGGACCGGGTCA-GGGCAGTCACCTGAGACCATGAGTTCCAGGGGGTCACTGGGGAAAGACAGCAGGTAGGGGTCGGAGCTGCGTGAGCCGTAGCACCTGTAGGTCCCCGTGTGGGCTGAGATCACAGGACTCACGGGGAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56005788 200 +  60714840 TCCATCCCAGCC--GAGAGCTCTGCT-CGGGGCAGGGCCAGAGCTGAG-----GTTTGAGCTCAGAGAGGACAGGGTCG-GGGCCCTCACCTGAGACCACGAGCTCCAGGGGGTCACTGGGGAAAGACAGCAGGTGGGGGTTGGAGCTGAGTGAGCCGTAGCACCTGTAGGTCCCCGCGTGGGCTGACATCACAGGACTCATGGGGAAT
i ponAbe2.chr19             C 0 N 0
s nomLeu3.chr10             102788213 199 - 106955855 TCCGTCTCAGCT--GAGA--TCTCCT-GGGGCCTGGGCCTGAGCTGAG----CCTTTGAGCTCAGAGAGGACAGGGTCG-GGGCTGTCACCTGAGACCACGAGCTCCAGGGGGTCACTGGGGAGAGACAGCAGGTGGGGGTTGGAGCGGAGTGAGCTGTAGCACCTGTACGTCCCTGTGTGAGCTGAGGTTACAGGACTCATGTGGAAT
i nomLeu3.chr10             I 761 C 0
s rheMac3.chr19               3686820 201 -  64156825 TCCGTCCCTGCCCAGAGC--TCTCCT-GGCGGCAGGGCCTGAGCTGAG----CCATTGAGCTCAGAGGGGACAGGGTCG-GGAGCCTCACCTAAGACAGTGAGCTCCACGGGGTCACTGGGGCGTGACAGCAGGTAGTGGGAGAAGCTGCGTGAGCTGATGCACCTGTAGGTCCCCCCATGCACTGAGGTCACAGGACCCATGGGGAAT
i rheMac3.chr19             I 28 C 0
s macFas5.chr19              55118280 199 +  59248254 TCCATCCCAGCT--GAGA--TCTCCG-GGGGCCTGGGCCTGAGCTGAG----CCTTTGAGCTCAGAGGGGACAGGATCA-GGGCCCTCACCTGAGACCACGAGCTCCAGGGGGTCACTGGGGTGAGACAGCAGGTAGGGGTTGGAGCTGAGTGAGCTGTAGCACCTGTAGGTCCCCGCGTGGGCTGAGGTCACAGGACCCATGGGGAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47222264 201 +  51301725 TCCATCCCAGCCCAGAGC--TCTCCT-GGGGGCAGGGTCCGAGCTGAG----CCTTTGAGCTCAGACAGAACAGGGTCA-GGGTCCTCACCTGAGACCACGAGCTCCAGGGGGTAACTAGGGCTTGACAGCAGGTAGGGGTAGGACCTGACTGCGCTGTAGCATCGGTAGGTTCCACCCTGGGCTGAGGTCACAGGACCCATGGGGAAT
i papAnu2.chr19             I 7 C 0
s chlSab2.chr6               46891717 198 +  50890351 TCCCTCCCAGCT--GAGA--TCT-CT-GGGGGCCGGGCCGGAGCTGAG----CCTTTGAGCTCAGAGGGGACAGGATCA-GGGCCCTCACCTGAGACCATGAGCTCCAGGGGGTCACTGGGGAGAGACAGCAGGTGGGGGCTGTAGCTGTGTGAGCCGTAGCACCTGTAGGTCCCTGTGTGGACTGAGGTCACAGGACCCATGGGGAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45543169 201 +  49145316 TCCATCCCAGCCCAGAGC--TCTCCT-GGGGGCAGGGCCTGAGCTGAG----CCTTTGAGCTCAGAGAGGACATGGTCA-GGGCCCTCACCTGAGACCACGAGCTCCAGGGGGTCACTGGGGTGAGACAGCAGGTAGGGGTTGGAGCTGCGTGAGCCATAGCACCTGTAGGTTCCTGCGTGGGCTGAGGTCACAGGACTCATGGGGAAT
i calJac3.chr22             C 0 C 0
s mm10.chr7                   3715965 187 + 145441459 CCCAACCCAGTAAACAGC--TCTGCT-ACAGTATGGAAGTGA------------TTCATGCT--GAGAAGTCAGGATCA-----CCTCACCTGAGACTGTGAGCTCCACAGGGGCACTGGCAGATGACAAGAGGTAGAAAGATGAGTCTTGAGCTCCATAGCACCTGTAGGTGCCTGAGAGATGGGAGGTCACAGCACTCATGGAGAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr1               19704248 202 - 122678785 TCCATCCCAGCCCCGTGC--TCTTGT-GGGCACAGGGCC----CTGAGGACAATGTGGCATATGAAGGAGACAGGGTCAGGGGCCCTCACCTGAGACCAGGATCTTCACGGGGACACTTGGGTGTGATAACAGGTAGGGGGAGGTGTTGAATGAGCCATAGCACCTGTAGGTGCCCCTGTGGGCTGAGGTCACAGGACTCATGGAAAAT
i canFam3.chr1              C 0 C 0

a score=8595.000000
s hg38.chr19_GL949751v2_alt    195630 2 +   1002683 TC
s panTro4.chr19              59127396 2 +  63644993 TC
i panTro4.chr19             C 0 N 0
s nomLeu3.chr10             102788412 2 - 106955855 TC
i nomLeu3.chr10             C 0 N 0
s rheMac3.chr19               3687021 2 -  64156825 TC
i rheMac3.chr19             C 0 N 0
s macFas5.chr19              55118479 2 +  59248254 TC
i macFas5.chr19             C 0 N 0
s papAnu2.chr19              47222465 2 +  51301725 TC
i papAnu2.chr19             C 0 N 0
s chlSab2.chr6               46891915 2 +  50890351 TC
i chlSab2.chr6              C 0 N 0
s calJac3.chr22              45543370 2 +  49145316 TC
i calJac3.chr22             C 0 N 0
s mm10.chr7                   3716152 2 + 145441459 TC
i mm10.chr7                 C 0 N 0
s canFam3.chr1               19704450 2 - 122678785 TC
i canFam3.chr1              C 0 N 0

a score=726424.000000
s hg38.chr19_GL949751v2_alt    705632 1386 +   1002683 GGAACATTCACCAAaataaatttttaaatgctgaatcataggtaatatgatagatgaaacagttgaattaaattataaatgtacaacaaggaaatgctggggaaattatcaaatattttaaaattaataaacacacatagcaataaacaatgagtggaagaaaaacatttcaaagaaaggtggaaaatattttgtatcaattaaaaatgaaaacacatctcggcaaatgactggggatacagatagtacagcgttaagggacaataagcctcaaatgtctgtgttagaaaagaaggaagagctgagtaaataggtaactttcacttgcagaaatactacacatcagcaaattaattccaaagtaacgtcgaggaaaaacataaaatggcaagcaaatatatacgtgcatatgtacatacattcataaatgacaaacaggacagaaaaatcagtgacatcaattttgttccttagaagaaacaggaaaattgacCCCAAAAAACTTTCCAGGCCACATTTGGTCATGATggaaatattttggcacttcctggttaagctcaacaccaacttgcacccaaaaccaataatttcatttctaggtaaatatgtctaattaattcagcatatgtatgcaagggatcacacagaaacacgattatcaaggcccgagttataaaagagaaaatccggaaacaacacaaatgtccatgataaaaagaatggataattacatgttgataaagttatgcatggactattaaactgcaatccaaaagaataaaatagagctataaaattcaatatgtatatggtgtcatagaaacacaaatgtgagaaaaagaaagaaaaatacaaaatttatattttttaaaatttgaaacaactatatatgtgagtgcttagggtgtgtgtgtgtgtgtgtgtgtgtgtgtataaccatatgtatataAATGCACACATACGCACACATATAGAATGTCCCggccaggcatggtggctcacacctgtaatctcagcactttgggaggctgaagtagacagatcacttgaggttaggagttcaagaccagcctggccaacatggagaaacctcctctctactaaaagtacaaaaattaggtgggcgtggtggtgggtgcctgtaaatccagctacttaggaggctgaggcacgagaattgcgtgaacctgggaggtggaggctgcaatgagccgaggtctcaccactgcattccaaactgggtgacgaagtgagattgcgtctcaaaaaaaaaaaaa--GTTCTAAAAGTTGTGACTTGGGTGTGGCAGATTGTGACATACTGccagctgctagaaatgctggggcaggaggattgcttgaactctgaagtcaaagaacagcctgggg
s panTro4.chr19              59640979 1384 +  63644993 ggaacattcaccaaaataaaattttaaatgctgaatcataggtaatatgatagatgaaacagttgaattaaattataaatgtacaacaaggaaatgctggggaaattatcaaatatatgaaaattaataaacacacatagcaataaacaatgagtggaagaaaaacatttcaaagaaaggtggaaaatattttgtatcaattaaaaatgaaaacacatctcggcaaatgactggagatacagatagaacagtgttaagggacaatacgcctcaaatgtctatgttagaaaagaaggaagagctgagtaaataggtaactttcacttgcagaaatactacacatcagcaaattaattccaaagtaacgttgaggaaaaacataaaatggcaagcaaatatatacgtgcatatgtacatacattcataaatgacaaacaggacagaaaaatcagtgacatcaattttgttccttagaagaaacaggaaaattgacCTCCAAAAAATTTCCAGGCCACATTTGGTCATGAtggaaatattttggcacttcctggttaagctcaacaccaacttgcacccaaaaccaataatttcatttctaggtaaatatgtctaattaattcagcatatgtatgcaagggatcacacagaaacatgattatcaaggcccgagttataaaagagaaaatccggaaacaacacaaaggtccatgataaaaagaatggataattacatgttgataaagttatgcatggactattaaactgcaatccaaaagaataaaatagagctgtaaaattcaatatgtatatggtgtcatagaaacataaatgtgagaaaaagaaagaaaaatacaaaatttatattttttaaaatttgaaacaactatatatgtgagtgcttagggggtgtgtgtgtgtgtgtgtgtgt----ataaccatatgtatataAACGCACACATACGCACACATATAGAATGTCCCggccaggcatggtggctcacacctgtaatctcagcactttgggaggctgaagtggacagatcacttgaggttaggagttcaagaccagcctggccaacatggagaaacctcctctctactaaaagtacaaaacttaggtgggcgtggtggtgggcgcctgtaaatccagctacttaggaggctgaggcatgagaattgcttgaacctgggaggtggaggctgcaatgagccgaggtctcaccactgcattccaaactgggtgatgaagtgagattgcatctcaaaaaaaaagaaaaTGTTCTAAAAGTTGTGACTTGGGTGTGGCAGATTGTGACATACTGCCAGGTGCTAGAAATgctggggcaggaggattgcttgaactctgaagtcaaagaacagcctgggg
i panTro4.chr19             N 0 C 0
s ponAbe2.chr19              56573585 1385 +  60714840 ggaacattcaccaaaataaatttttaaacgctgaatcataggtaatatgatagatgaaacagttgaattaaattataaatgtacaacaaggaaatgctggggaaattatcaaatatttgaaaattaataaacacatatagcaataaacaatgagtggaagaaaaacatttcaaagaaaagtggaaaatattttgtatcaattaaaaatgaaaacacatctcagcaaatgactggggatacagatagaacagtattaagggacaataagcctcaaatgtctatgttagaaaagaatgaagagctgagtaaatatataactttcacttgcagaaatactacacatcagcaaattaattccaaagtaacatcgaggaaaaacataaaatggcaagcaaatatatacatgcacatgtacatacattcataaatgacaaacaggacagaaaaatcagtgacatcaattttgttccttagaagaaacaggaaaattgaccaaAAAAAAATTTCCAGGCCACATTTGGTCATGATggaaatattttggcacttcctggttaagctcaacaccaacttgcacctgaaaccaataatttcatttctaggtaaatatgtctaattaattcggcatatgtatgcaagggatcacacagaaacatgattatcaaggcccgagttataaaagaaaaaatccagaaacaacacaaatgcccatgataaaaagaatggataattacatgttgataaagttatgcatggactattaaactgcaatccaaaagaataaaatagagctataatattcaatatgtatatggtgtcatagaaacataaatgtgagaaaaagaaagaaaaatacaaaaTTTATATTTTTTAAAATTTGAAACAACTATATATGTGAGTGCTTAGGG-gtgtgtgtgtgtgtgtgtgtgtgtgtATAACcatatgcatataaacatacacatacacacacatataGAGTGTCCCggccaggcatggtggctcacacctgtaatctcagcactttgggaggctgaagtggacagatcacttgaggttagaagttcaagaccagcctggccaacatggagaaacctcctctctactaaaagtacaaaaattaggtgggcgtggtggtgagtgcttagaattccagctacttaggaggctgaggcacaagaattgcttgaacctgggaggtggaggctgcaatgaaccaaggtctcaccactgcgttccaaactgggtgatgaagcgagagtgtgtctcaaaaaaaaaaaaT--GTTCTAAAAGTTGTGACTTCGGTGTGGCAGATTGTGACgtactgccagctgctagaaatgctggggcaggaggattgcttgaactctgaagtcaaagaccagcctgggg
i ponAbe2.chr19             N 0 C 0
s nomLeu3.chr10             103234735 1382 - 106955855 GGAACATTCACTAAAATAAatttttaaatgctgaatcataggtaatatgatagatgaaacagttgaattaaattataaatacacaacaaggaaatgctggggaaattatcaaatatttgaaaattaataaacacgcatagcaataaagaatgagt-gaagaaaaacatttcaaagaaaagtggaaaatattttgtatcaattaaaaatgaaaacacatctcagcaaatgactggggatacagatagaacagtgttaagggacaattagcctcaaatgtctatgttagaaaagaaggaagagctgagtaaatatgtaactttcacttgcagaaataccacacatcagcaaattaattccaaagtaacatcgaggaaaaacataaaatggCAAGCAAATATAtacatgcatatgtacatacattcataaatgccaaACAGGACAGAAAAATCAGTGACGTCAATTTTATTCCTTAGAAGAAACAGGAAAATTGACCAAAAACAAATTTCCAGGCCACATTTGGTCATGATGGAAAtattttggcacttcctggttaagctcaacaccaacttgcacccaataccaataatttcatttataggtaaatatatctaattaattcggcatatgtatgcaagggatcacacagaaacatgattatcaaggcccgagttataaaacagaaaatccagaaacaacgcaaatgcccatgataaaaagaatggataattacatgttgataaagttatgcatggactattaaattgcaatccaaaagaataaaatagagctataaaattcaatatgtatatggtgtcatagaaacataaatgtgagaaaaagaaagaaaaatacaaaatttatatttttaaaaatttgaaacaactatatatgtgagTGCTTGGgt-gtgtgtgtgtgtgtgtgtgtgtgtgtATAACCATATGGATATAAACGCACACATACACACACATATAGAATGTCCTggccaggcatggtgggtcacacctgtaatctcagcactttgggaggctgaggtggacagatcacttgaggttagaagttcaagaccagcctggccaacatggagaaacctcctctttactaaaagtacaaaaattaggtgggcgtggtggtgggtgcctgtaaatccagctacttaggaggctgaggcacgagaattgcttgaacctgggaggtggaggctgcaatgagccaaggtctcaccactgcattcctagctgggtgatgaagtgagattgcatctcaaaaaaaaaaT----GTTCTAAAAGTTGTGACTTGGGTGTGGCAGATTGTGACGTACTgccagctgctagaaacgctggggcagaaggattgcttgaactctgaagtcaaagaccagcctgggg
i nomLeu3.chr10             N 0 C 0

a score=913812.000000
s hg38.chr19_GL949751v2_alt    707018 382 +   1002683 aaaatagcACATGAAGAAGAGTTTGAATCTCAGATAAAAACAACAAAAATACATCAAAAGTCTTTAATGTAAGCCAAGCATTCAGTCATCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGTTGGTTATAGTGAAGGATGCAAGGTGTCAATTCTAGTTGGAACAATTTCCAGGAAGCCATGTTCTGCTCTTGACCAAACAGCCACTGGGCCTCATGCAAGGTAGAAATAGCCTGCATACGTCATCCTCCCATGATGTGGTCAGCATGTAAACTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAACTGAGCTGGGGCGCAGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGC
s panTro4.chr19              59642363 381 +  63644993 aaaatagcACATGAAGAAGAGTTTGAATCTCAGATAAAAACAACAAAAATAC-TCAAAAGTCTTTAATGTAAGCCAAGCATTCAGTCATCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGTTGGTTATAGTGAAGGATGCAAGGTGTCAATTCTAGTTGGAACAATTTCCAGGAAGCCATGTTCCGCTCTTGACCAAACAGCCACTGGGCCTCATGCAAGGTAGAAATAGCCTGCATACGTCATCCTCCCATGATGTGGTCAGCATGTAAACTGCGTGAGCCCCTCACAACATCCTGTGTGCTGCTGAACTGAGCTGGGGCGCAGCCACCTGTCTGCACCGACAGCACCATGTCGCTCATGGTCGTCAGCATGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56574970 381 +  60714840 aaaatagcACATGAAGAAGAGTTTGAATCTCAGATAAAAACAACAAAAATACATCAAAAGTCTTTAATGTAAGCCAAGCATTCAGTCATCTCCTGTATGAGATATTGGATCTGAGACGTGTTTTGAGTTGGTAATAGTGAAGGATGCAAGGTGTCAATTCTAGTCGGAACAATTTCCA-GAAGCCATATTCCGCTCTTGACCAAACAGCCACTGGGCCTCATGCAAGGTAGAAATAGCCTGCATACGTCATCCTCCCATGATGTGGTCAGCATGGAAACTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAACTGAGCTGGGGCGCAGCCGCCTGTCTGCACAGGCAGCACCATGTCACTCATGGTCGTCAGCATGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103236117 381 - 106955855 aaaacagcacatgAAGAGGAGTTTGAATCTCAGATAAAAACAACAAAAATACATCAAAAGTCTTTAATGTAAGCCAAGCATTCAGTCATCTCCTGTATGAGAGACTGGATCCGAGATGTGTTTTGAGTTGGTCATAGTGAAGGATGCAAGGCGTCAATTCTAGTCGGAACAATTTCCAGGAAGCCATGTTCCGCTCTTGACCAAACAGCCACTGGGCCTCATGCGAGGTAGAAATAG-CTGCATACGTCATCCTCCCATGATGTGGTCAGCAGGTAAAGTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAACTGAGCTGGGGCGCAGCCGCCTGTCTGCACAGGCAGCACCATGTTGCTCATGGTCGTCAGCATGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60521506 382 +  64156825 aaAATAGCCCATGGAGAAGAGTTTGAATCTCAGAAGAAAACAACAAAAATACGTCAAAAGTCTTTCATGTCAGCACAAAATTCAGTCATCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGTTGGCAATAGTGAAGGATGCAAGGTGTCAATTCTAGTCGGAACAATTTCCAGGAAGCCATGTTCCACTCTTGAGCAAACAACCACTGGGCCTCATGCAAGGCAAAAAGAGCCTGTGTACGTCATCCTCTCATGATGTGGTCAGCATGTCAACTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAGCTGAGCTGGGGCACGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCATCAGCATGGC
i rheMac3.chr19             N 0 C 0
s macFas5.chr19              55621124 382 +  59248254 aaAATAGCCCATGGAGAAGAGTTTGAATCTCAGAAGAAAACAACAAAAATACGTCAAAAGTCTTTCATGTCAGCACAAAATTCAGTCATCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGTTGGCAATAGTGAAGGATGCAAGGTGTCAATTCTAGTTGGAACAATTTCCAGGAAGCCATGTTCCACTCTTGAGCAAACAACCACTGGGCCTCATGCAAGGCAGAAAGAGCCTGTGTACGTCATCCTCTCATGATGTGGTCAGCATGTCAACTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCATCAGCATGGC
i macFas5.chr19             N 0 C 0
s papAnu2.chr19              47692715 382 +  51301725 aaaatagCACATGGAGAAGAGTTTGaatctcagaagaaaacaacaaaaatacgtCAAAAGTCTTTCATGTCAGCACAAAATTCAATCATCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGTTGGTAATAGTGAAGGATGCAAGGTGCCAATTCTAGTTGGAACAATTTCCAGGAAGCCATGTTCCACTCTTGAGCAAACACCCACTGGGCCTCATGCAAGGCAGAAAGAGCCTGCGTACGTCATCCTCTCATGATGTGGTCAGCATGTAAACTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGC
i papAnu2.chr19             N 0 C 0
s chlSab2.chr6               47373404 382 +  50890351 aaAATAGCACATGGAGAAGAGTTTGAATCTCAGAAGAAAACAACAAAAATACGTCAAAAGTCTTTCATGTCAGCACAAAATTCAATCCTCTCCTGTATGAGAGATTGGATCTGAGACGTGTTTTGAGTTGGTAATAGTGAAGGATGCAAGGTGTCAATTCTAGTCGGAACAATTTCCAGGAAGCCATGTTCCACTCTTGAGCAAACACCCACTGGGCCTCGTGCAAGGCAGAAAGAGCCTGTGTACGTCATCCTCTCATGATGTGGTCAGCATGTCAACTGCATGAGCCCCTCACAACATCCTGTGTGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCATCAGCATGGC
i chlSab2.chr6              N 0 C 0

a score=149198.000000
s hg38.chr19_GL949751v2_alt    707400 53 +   1002683 GTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGCGGTGGGGTGGAGA
s panTro4.chr19              59642744 53 +  63644993 GTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGCGCTGGGATGGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575351 53 +  60714840 GTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGCGCTGGGGTGGAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103236498 53 - 106955855 GTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGTGCTGGGGTGGAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60521888 53 +  64156825 ATGTGTTGGTGAGTCCCAGAAGGGAATCGAGGGAGGGAGCACTGGGGTGGATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621506 53 +  59248254 ATGTGTTGGTGAGTCCCAGAAGGGAATCGAGGGAGGGAGCACTGGGGTGGATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693097 53 +  51301725 GTGTGTTGGTGAGTCTCGGAAGGGAATCGAGGGAGGGAGCACTGGggtggaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47373786 53 +  50890351 GTGTGTTGGTGAGTCCCGGAAGGGAATCGAGGGAGGGAGCACTGGGGtggata
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45769230 50 +  49145316 GTGTCTGGGTGAGTCCTGGAAGGGAA---AGGAGGGCAGGGTTGGGATGGAAA
i calJac3.chr22             N 0 I 747

a score=160341.000000
s hg38.chr19_GL949751v2_alt    707453  78 +   1002683 TCTGGGCCTGGA-GTGGAGATATGGGCCTGGAGTGGAGATAT-----------------------------------------------------------GGGCCTGGAGTGGAGATATAGGCCTGGAGTGGAGATA
s panTro4.chr19              59642797  78 +  63644993 TCTGGGCCTGGA-GTGGAGATCTGGGCCTGGAGTGGAGATAT-----------------------------------------------------------GGGCCTGGAGTGGAGGTATAGGCCTGGAGTGGAGATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575404  78 +  60714840 TCTGGGCCTCGA-GTGGAGATATGGGCCTGGAGTGGAGATAT-----------------------------------------------------------AGGCCTGGAGTGGAGATATAGGCCTGGAGTGGAGATC
i ponAbe2.chr19             C 0 I 11
s nomLeu3.chr10             103236551 137 - 106955855 TCTGGGCCTGGA-GTGGAGATCTGGGCCTGGAGTGGAGATATGGGCCTGGAACTGTAGATATGGGCCTGGAGTGGAGATACGGGCCTGGAACTGTAGATACGGGCCTGGAATGGAGATCTGGGCCTGGAGTGGAGACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60521941  79 +  64156825 TCTGGGCCTGGAGGTAAAGATATGGGCCTGAGGTGGAGATAC-----------------------------------------------------------GAGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621559  79 +  59248254 TCTGGGCCTGGAGGTAAAGATATGGGCCTGAGGTGGAGATAC-----------------------------------------------------------GAGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693150  79 +  51301725 tctgggcctggaggtAAAGATATGGGCCTGAGGTGGAGATAt-----------------------------------------------------------gagcctggagtggagatataGGCCTGGAGTGGAGACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47373839  79 +  50890351 tctgggcctggaggtaaaggtataggcctgaggtggagatat-----------------------------------------------------------aggcctggAGTGGAGATATGGGCCTGGGGTGGAGATA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I

a score=31742.000000
s hg38.chr19_GL949751v2_alt    707531 24 +   1002683 TGGGCCTGGGGTGGAGATATGGGC
s panTro4.chr19              59642875 24 +  63644993 TGGGCCTGGGGTGGAGATATGGGC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103236688 24 - 106955855 CGGGCCTGGAGTGGAGATACGGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60522020 24 +  64156825 TAGGCCTGGAGTGGAGATATGGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621638 24 +  59248254 TGGGCCTGGAGTGGAGATATGGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693229 12 +  51301725 TGGGCCTGGAGC------------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47373918 24 +  50890351 TGAGCCTGGAGTGGAGACATGGGC
i chlSab2.chr6              C 0 C 0
e ponAbe2.chr19              56575482 11 +  60714840 I
e calJac3.chr22              45769280 747 +  49145316 I

a score=42744.000000
s hg38.chr19_GL949751v2_alt    707555 34 +   1002683 CTGGAG-TGGAGATA-------------------------------------------------------------TGGGCCTGGAACTGTAGATA
s panTro4.chr19              59642899 34 +  63644993 CTGGAG-TGGAGATA-------------------------------------------------------------TGGGCCTGGAACTGTAGATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575493 95 +  60714840 CGGGGG-TGGAGATATGAGCCTGGAATGGAGACGTGGCCTTTGACGTAGAGATATGGGCCTGCACCCCCGAGATAGTGGGCCTGGAACTGTAGATA
i ponAbe2.chr19             I 11 I 33
s nomLeu3.chr10             103236712 34 - 106955855 CTGGAG-TGGAGATA-------------------------------------------------------------TGGGCCTGGAACTGTAGATA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60522044 33 +  64156825 CTGGGG-TGGAGATA-------------------------------------------------------------TGAGCCTGGAG-TGGAGACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621662 33 +  59248254 CTGGGG-TGGAGATA-------------------------------------------------------------TGAGCCTGGAG-TGGAGACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693241 27 +  51301725 -------TTTAGATA-------------------------------------------------------------TGGGCCTGGaa-tggagata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47373942 34 +  50890351 CTGGAGCTTTAGATA-------------------------------------------------------------TGGGCCTGGAA-TGGAGATA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I

a score=10627.000000
s hg38.chr19_GL949751v2_alt    707589 13 +   1002683 TGGGCCTGAAG---TA
s panTro4.chr19              59642933 13 +  63644993 TGGGCCTGGAG---TA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103236746 13 - 106955855 TTGGCCTGGAG---TG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60522077 14 +  64156825 TGGGCCTGGAGCTT--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621695 14 +  59248254 TGGGCCTGGAGCTT--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693268 11 +  51301725 tgggcctggag-----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47373976 11 +  50890351 TGGGCCTGGAG-----
i chlSab2.chr6              C 0 I 4
e ponAbe2.chr19              56575588 33 +  60714840 I
e calJac3.chr22              45769280 747 +  49145316 I

a score=-2989.000000
s hg38.chr19_GL949751v2_alt    707602 1 +   1002683 -G
s panTro4.chr19              59642946 1 +  63644993 -G
i panTro4.chr19             C 0 I 155
s ponAbe2.chr19              56575621 1 +  60714840 -G
i ponAbe2.chr19             I 33 C 0
s nomLeu3.chr10             103236759 1 - 106955855 -G
i nomLeu3.chr10             C 0 I 20
s rheMac3.chr19              60522091 1 +  64156825 T-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621709 1 +  59248254 T-
i macFas5.chr19             C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I
e chlSab2.chr6               47373987 4 +  50890351 I
e papAnu2.chr19              47693279 0 +  51301725 C

a score=51189.000000
s hg38.chr19_GL949751v2_alt    707603 39 +   1002683 AGATATGGGCCTGGAGTAGAGATATGGGCCTGGAACTGT
s panTro4.chr19              59643102 39 +  63644993 AGATATGGGCCTGGAGTAGAGATATGGGCCTGGAACTAT
i panTro4.chr19             I 155 C 0
s ponAbe2.chr19              56575622 38 +  60714840 AGATATGGGCCTGGAGTGGATATATGGGCCTGG-ACTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103236780 39 - 106955855 AGATATGGGCCTGGAGTAGAGATATGGGCCTGGAACTGT
i nomLeu3.chr10             I 20 C 0
s rheMac3.chr19              60522092 39 +  64156825 AGATATGGGCCTGGAATGGAGATATGGGCCTGGAGATAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621710 39 +  59248254 AGATATGGGCCTGGAATGGAGATATGGGCCTGGAGATAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693279 24 +  51301725 ---------------atagagatatgggcctggaggtgg
i papAnu2.chr19             C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I
e chlSab2.chr6               47373987  4 +  50890351 I

a score=167207.000000
s hg38.chr19_GL949751v2_alt    707642 126 +   1002683 AGATATGGGCCTGGAGTGGAGATA---------------------------------------TTGGCTTGGA-GTGCAGATATGGACCTGGAATTG--------------------AGATACGGGCCTGGAGGTGGAGATATGGGCCTAGAGTGG--------------------AGATATGGGCCTGGAGGTGGAGATATGGGC
s panTro4.chr19              59643141 185 +  63644993 AGATATGGGCCTGGAGTGGAGATATTGGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATGTTGGCTTGGA-GTGCAGATATGGGCCTGGAAAGGAGACATGGGCCTGGAGGTGGAGATACAGGCCTGGAGGTGGAGATATGGGCCTAGAGTGG--------------------AGATATGGGCCTGGAGGTGGAGATATGGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575660 126 +  60714840 AGATATGGGCCTGGAGTGGAGATA---------------------------------------TGAGCCTGGAGGTGGAGATATGGGCCTGGAGTGG--------------------AGATATGGGCCTGGAGGTGGAGATTTGGGCCTGGAGTGG--------------------AGATATGGGCCTGGA-GTGGAGATACGGGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103236819 107 - 106955855 AGATATGGGCCTGGAGTGGAGATA---------------------------------------TGGGCCTGGA-GTGGAGATATGGGCCTGGAACTG---------------------------------------TAGATATGGGCCTAGAGTGG--------------------AGATGTGGGCCTGGAACTGTAGATATGGGC
i nomLeu3.chr10             C 0 I 296
s rheMac3.chr19              60522131 106 +  64156825 AGATATGGGCCTGGAGTGGAGATA---------------------------------------CTGGCTTGGA-ATGCAAGTATGGGCCTGGAATGA--------------------AGATACGGGCCTGGAGGTGG---------------------------------------AGATATGGGCCTAGA-GTGTAGATAGGGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621749 145 +  59248254 AGATATGGGCCTGGAGTGGAGATA---------------------------------------CTGGTTTGGA-ATGCAAGTATGGGCCTGGAATGA--------------------AGATACAGGCCTGGAGGTGGAGATATGAGCCTGGAGTGAAGATATGAGCCTAGAACTGTAGATATGGGCCTGGA-GTGAAGATATGAGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693303 106 +  51301725 agatgtgggcctggagtggagata---------------------------------------ttGGTTTGGA-GTGAAAATATGGGCCTGGAATGG--------------------AGATACAGGCCTAGAACTGT---------------------------------------AGATATGGGCCTGGA-GTGAAGATATGAGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47373991  87 +  50890351 AGATATGGGCCTGGAGTGGAGATA---------------------------------------TTGTCTTGGA-GTGCAAATATGTACCTGGAATGG--------------------AGATACGGGCCTGGAGGTGG---------------------------------------AGATATGG--------------------GC
i chlSab2.chr6              I 4 C 0
e calJac3.chr22              45769280 747 +  49145316 I

a score=44304.000000
s hg38.chr19_GL949751v2_alt    707768 25 +   1002683 CTGGAACTGTAGATATGGGCCTGGA
s panTro4.chr19              59643326 25 +  63644993 CTGGAACTGTAGATATGGGCCTGGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575786 24 +  60714840 CTGGAG-TGGAGATATGGGCCTGGA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60522237 25 +  64156825 CTGGAACTGTAGATATGGGCCTGGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55621894 25 +  59248254 CTAGAACTGTAGATATGGGCCTGGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693409 25 +  51301725 CTGGAACTGTAGatatgggcctgga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47374078 25 +  50890351 CTGGAACTGTAGATATGGGCCTGGA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I
e nomLeu3.chr10             103236926 296 - 106955855 I

a score=16309.000000
s hg38.chr19_GL949751v2_alt    707793 37 +   1002683 GTAG--------------------AGATATGGGCCTGGAGTGGAGATGTTGGCTTGG
s panTro4.chr19              59643351 37 +  63644993 GTAG--------------------AGTTATGAGCCTGGAGTGGAGATGTTGGCTTGG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103237222 57 - 106955855 GTGGAGATATGGGCCTGGAACTGTAGATATGGGCCTGGAGTGGAGATATGGGCCTGG
i nomLeu3.chr10             I 296 T 191
s macFas5.chr19              55621919 37 +  59248254 GTGG--------------------AGATATGGGTCTGGAGTGGAGATACTGGCTTGG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47374103 19 +  50890351 GTGG--------------------AGATATGGGCCTGGA------------------
i chlSab2.chr6              C 0 C 0
e ponAbe2.chr19              56575810  0 +  60714840 C
e calJac3.chr22              45769280 747 +  49145316 I
e papAnu2.chr19              47693434  0 +  51301725 C
e rheMac3.chr19              60522262  0 +  64156825 C

a score=220.000000
s hg38.chr19_GL949751v2_alt    707830 2 +   1002683 AG
s panTro4.chr19              59643388 2 +  63644993 AG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575810 2 +  60714840 AC
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55621956 2 +  59248254 AA
i macFas5.chr19             C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I
e nomLeu3.chr10             103237279 191 - 106955855 T
e chlSab2.chr6               47374122 0 +  50890351 C
e papAnu2.chr19              47693434 0 +  51301725 C
e rheMac3.chr19              60522262 0 +  64156825 C

a score=80947.000000
s hg38.chr19_GL949751v2_alt    707832 93 +   1002683 TGCAGATATGGGCCTGGAATGGAGACACGGGCCTGGAGGTGGAGATACAGGCCTGGAGGTGGAGATATGGGCCTGGAGTGTAGATATGGGCCT
s panTro4.chr19              59643390 93 +  63644993 TGCAGATATGGGCCTGGAATGGAGACATGGGCCTGGAGGTGGAGATACAGGCCTGGAGGTGGAGATATGGGCCTGGAGTGTAGATATGGGCCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575812 92 +  60714840 TGTAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAACTGTAGATATGGGCCTGGA-GTGGAGATATAGGCCTGGAGTGTAGATATGGGCCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103237088 92 - 106955855 TGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAACTGTAGATATGGGCCTGGA-GTGGAGATATGGGCCTGGAGTGGAGATATGGGCCT
i nomLeu3.chr10             T 191 C 0
s macFas5.chr19              55621958 73 +  59248254 TGCAAATATGGGCCTGGAATGGAGATACGGGCCTGGAG--------------------GTGGAGATATGGGCCTAGAGTGTAGATAGGGGCCT
i macFas5.chr19             C 0 I 1
s chlSab2.chr6               47374122 56 +  50890351 -----------------ACTGTAGATATGGGCCTGGAG--------------------GTGGAGATATGGGCCTAGAGTATAGATATGGGCCT
i chlSab2.chr6              C 0 N 0
e calJac3.chr22              45769280 747 +  49145316 I
e papAnu2.chr19              47693434  0 +  51301725 C
e rheMac3.chr19              60522262  0 +  64156825 C

a score=57118.000000
s hg38.chr19_GL949751v2_alt    707925 75 +   1002683 GGA-GTAGAGATATAGGAC-AGAGGTGGAGATATAGGCCTGGA-GTGGAGATATGGGCCTGGAG-TAGAGATATAGGAC
s panTro4.chr19              59643483 76 +  63644993 GGA-GTAGAGATATAGGCCTGGAGGTGGAGATATAGGCCTGGA-GTGGAGATATGGGCCTGGAG-TAGAGATATAGGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575904 77 +  60714840 GGAGGTAGACATATGGGCC-TGGAGTGGAACTATGAGCCTGGAGGTGGAGATATGGGCCTGGAG-TGGAGATATGGGCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103237180 77 - 106955855 GGA-GTGGAGATATGGACCTGGAACTGTAGATATGGGCCTGGA-GTGGAGATATGGGCCTGGAACTGTAGATATGGGCC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55622032 57 +  59248254 GAA-CTGTAGATATGGGCC-TGGAGTGAAGATATGAGCCTGGA-------------------AC-TGTAGATATGGGCC
i macFas5.chr19             I 1 I 1
s chlSab2.chr6               47481153 75 +  50890351 GGA-GTGGAGATATGGGCC-TGGAGTGGAGATATGGGTCTGGA-GAGGAGATATGAGCCTGGAG-AGGAGATATGGGCC
i chlSab2.chr6              N 0 N 0
e calJac3.chr22              45769280 747 +  49145316 I
e papAnu2.chr19              47693434  0 +  51301725 C
e rheMac3.chr19              60522262  0 +  64156825 C

a score=-314.000000
s hg38.chr19_GL949751v2_alt    708000 4 +   1002683 GGAG-
s panTro4.chr19              59643559 4 +  63644993 GGAG-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575981 4 +  60714840 TGGA-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103237257 4 - 106955855 TGGA-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55622090 3 +  59248254 -GGA-
i macFas5.chr19             I 1 C 0
s chlSab2.chr6               47374178 4 +  50890351 -GGAA
i chlSab2.chr6              N 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I
e papAnu2.chr19              47693434 0 +  51301725 C
e rheMac3.chr19              60522262 0 +  64156825 C

a score=46990.000000
s hg38.chr19_GL949751v2_alt    708004 20 +   1002683 GTGGAGATATGGGCCTGGAG
s panTro4.chr19              59643563 20 +  63644993 GTGGAGATATGGGCCTGGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56575985 20 +  60714840 GTGGAGGTATGGGCCTGGAG
i ponAbe2.chr19             C 0 I 92
s nomLeu3.chr10             103237261 20 - 106955855 GTGGAGATATGGGCCTGGAA
i nomLeu3.chr10             C 0 I 40
s rheMac3.chr19              60522262 20 +  64156825 GTGGAGATATGGGTCTGGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55622093 20 +  59248254 GTGGAGATATGGGTCTGGAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693434 20 +  51301725 gtggagatatgggtctggag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47374182 20 +  50890351 CTGTAGATATGGGTCTGGAG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45769280 747 +  49145316 I

a score=193616.000000
s hg38.chr19_GL949751v2_alt    708024 112 +   1002683 TGGAGATATGGGCCTGGAGGTG---------------------------------------ATGTACAGATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGGAGGGGCCCTGGCCACATGTGGGTGAGTCCTTCCCCC
s panTro4.chr19              59643583 151 +  63644993 TGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAGGTGATGTACAGATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGCCCTGGTCACATGTGGGTGAGTCCTTCCCCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103237321 111 - 106955855 TGGAGACATGGGCCTGGAAGTG---------------------------------------ATGTACAGATGGATCCTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGTGGGTGAGTCCTTCCCC-
i nomLeu3.chr10             I 40 C 0
s rheMac3.chr19              60522282 111 +  64156825 TGGAGATATGGGCCTGGAGGTG---------------------------------------ATGTACAGATGGATCATCCATCATGATCTTTCTTTATAGGGTTCTTCTTGCTGCAGAGGGCCTGGTCACATGTGGGTGAGTCCTTCTCC-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55622113 111 +  59248254 TGGAGATATGGGCCTGGAGGTG---------------------------------------ATGTACAGATGGATCATCCATCATGATCTTTCTTTATAGGGTTCTTCTTGCTGCAGAGGGCCTGGTCACATGTGGGTGAGTCCTTCTCC-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693454 111 +  51301725 tggagatatgggcctggaggTG---------------------------------------ATGTACAGATGGATCATCCATCATGATCTTTCTTTATAGGGTTCTTCTTGCTGCAGAGGGCCTGGTCACATGTGGGTGAGTCCTTCCCC-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47374202 111 +  50890351 TGGAGATATGGGCCTGGAGGTG---------------------------------------ATGTACAGATGGATCATCCATCATGATCTTTCTTTATAGGGTTCTTCTTGCTGCAGAGGGCCTGGTCACATGTGGGTGAGTCCTTCCAC-
i chlSab2.chr6              C 0 C 0
e ponAbe2.chr19              56576005  92 +  60714840 I
e calJac3.chr22              45769280 747 +  49145316 I

a score=900724.000000
s hg38.chr19_GL949751v2_alt    708136 382 +   1002683 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATGTTCCTGAAACGGGAGGCAGGCGACACAGGGGGTTGACTGATGGGCTGACCATGGGAAGCCATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGCCAGGGGAAGCTTCG-CCACAGTTCTGTCCTAGCCCTCCCCGGCCTTTCTTTCCCTTGGCTGAGTCTGTGGGGACCCAGGGGGAGACTGAAGTGCTCAAAGGAGTGGTGTGCAGGGAGGAAGTGGTGTCACCGGCAGAGGAAGGGAGAGAAGCAGTGCAAGGAACAACAGGCCTCTGAGGACAAGAGCATAACTCACACCCTCCAGCGTTTCCATGAC-GGTAGGGGCTGCAATGTGGCTGCTGTCATTCTACC
s panTro4.chr19              59643734 382 +  63644993 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATGTTCCTGAAACGGGAGGCAGGTGACACAGGGGGTTGACTGATGGGCTGACCATGGGAAGCCATGTGGGAATCTCTCATGAGCTAGGAAAAGGAAGCCAGGGGAAGCTTCG-CCACAGTTCTGTCCTAGCCCTCCCCAGCCTTTCTTTCCCTTGGCTGAGTCTGTGGGGACCCAGTGGGAGACTGAAGTGCTCAAAGGAGCGGTGTGCGGGGAGGAAGTGGTGTCACCGGCAGAGGAAGGGAGAGAAGCAGTGCAAGGAACAACAGGCCTCTGAGGACAAGAGCATAATTCACACCCTCCAGCGTTTCCATGAC-GGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56576097 383 +  60714840 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATTTTCCTGAAATGGGAGGCAGGCGGCACAGGGGATTGACTGATGGGCTGACCATGGGAAGCCATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGTAACGGGAAGCTTGG-CCACAGTTCTGTCCTAGCCCTCCCCGGCCTTTCTTTCCCTTGGCTGAGTCTGTGGGGACCCAGGGGGAGACTGAAGTGCTCAAAGGAGCGGTATGCGGGGAGGAAGTGGTGTCACCGGCAGAGGAAGGGAGAGAAGCAGTGCAAGGAACAACAGGCCTCTGAGGACAAGAGCATAACTCACACTCTCCAGCGTTTCCATGACGGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACC
i ponAbe2.chr19             I 92 I 1
s nomLeu3.chr10             103237432 382 - 106955855 AAACCTTAGGTTGTCATCTCCCCACGTAAGATGATTTTCCGGAAACAGGAGGCAGGCAGCACAGGGGGTTGACTGATGGGCTGACCATGGGAAGCCATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGTCATGGGAAGCTTAG-CCACAGTCCTGTCCTAGCCCTCCCCGGCCTTTCTTTCCCTTGGCTGAGTCTATGGGGACCCAGGAGGAGACTGAAGTGCTCAAAGCAGCGGTGTGCAGGGAGGAAGTGGTGTCACCAGCAGAGGAAGGGAGGGAAGCAGTGCTAGGAACAGCAGGCCTCTGAGGACAAGAGCATAACTCACACCCTCCAGCGTTTCCATGAC-GGTAGGGGCTGCGGTGTGGCTGCTGTCATTCTACC
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              60522393 382 +  64156825 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATTTTCTTGAAACATGAGGCAGGCAGCACAAGGGGTTGACTGATGGGATGACGATGGGAAGCCATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGCCATGGGAAGCTTGGCCCACAGTTCTGTCCTAGCCCTCCCTGTTCTTTCTTTCCCTTGGCTGAGTCTGTGGGGACCCTGGGGGAGACTGGAGTGCTCAAAGCAGCAGTGTGTGGGGAAGAAGTGGTGTCACCGACAGAGGAAGGGAGGGAAGCAGTGCAA-GAACAGCCAGCCTCTGAGGACAAGAACGTAACTCACACCCTCCAGTGTTTCCATGAT-GGTCGGGGCTGCAGTGTTGCCGCTGTCATTCTACC
i rheMac3.chr19             C 0 I 11
s macFas5.chr19              55622224 382 +  59248254 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATTTTCTTGAAACATGAGGCAGGCAGCACAAGGGGTTGACTGATGGGATGACGATGGGAAGCCATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGCCATGGGAAGCTTGGCCCACAGTTCTGTCCTAGCCCTCCCTGTTCTTTCTTTCCCTTGGCTGAGTCTGTGGGGACCCTGGGGGAGACTGGAGTGCTCAAAGCAGCAGTGTGTGGGGAAGAAGTGGTGTCACCGACAGAGGAAGGGAGGGAAGCAGTGCAA-GAACAGCCAGCCTCTGAGGACAAGAACGTAACTCACACCCTCCAGTGTTTCCATGAT-GGTCGGGGCTGCAGTGTTGCCGCTGTCATTCTACC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47693565 382 +  51301725 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATTTTCTTGAAACACGAGGCAGGCAGCACAAGGGGTTGACTGATGGGATGACGATGGGAAGCCATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGCCATGGGAAGCTTGGCCCACAGTTCTGTCCTAGCCCTCcctgttctttctttcccttggCTGAGTCCTTGGGGACCCTGGGGGAGACTGGAGTGCTCAAAGCAGCGGTGTGCGGGGAAGAAGTGGTGTCACCagcaaaggaagggagggaagcagtGCAA-GAACAGCAGGCCTCTGAGGACAAGAGCATAACTCACACCCTCCAGCATTTCCATGAT-GGTCGGGGCTGCAGTGTTGCCGCTGTCATTCTACC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47374313 382 +  50890351 AAACCTTAGGTTGTCATCTCCCCACATAAGATGATTTTCTTGAAACACGAGGCAGGCAGCACAAGGGGTTGACTGATGGGATGACGATGGGAAGCTATGTGGGAATCTCTCATGAACTAGGAAAAGGAAGCCATGGGAAGCTTGGCCCACAGTTCTGTCCTAGCCCTCCTTGTTCTTTCTTTCCCTTGGCCGAGTCTGTGGGGACCCTGGGGGAGACTGGAGTGCTCAAAGCAGCGGTGTGCGGGGAAGAAGTGATGTCACCGGCAGAGGAAGGGAGGGAAGCAGTGCAA-GAACAGCAGGCCTCTGAGGACAAGAGCGTAACTCACACCCTCCAGCGTTTCCATGAT-GGTCGGGGCTGCAGTGTTGCCGCTGTCATTCTACC
i chlSab2.chr6              C 0 I 11
e calJac3.chr22              45769280 747 +  49145316 I

a score=6376.000000
s hg38.chr19_GL949751v2_alt    708518 9 +   1002683 TAAGAGGTG
s panTro4.chr19              59644116 9 +  63644993 TAAGACGTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56576481 9 +  60714840 GAAGAGGTG
i ponAbe2.chr19             I 1 C 0
s nomLeu3.chr10             103237815 9 - 106955855 GAAAAGGTG
i nomLeu3.chr10             I 1 C 0
s macFas5.chr19              55622606 7 +  59248254 --AGAAGCG
i macFas5.chr19             C 0 I 4
s papAnu2.chr19              47693947 7 +  51301725 --AGAAGCG
i papAnu2.chr19             C 0 I 4
e calJac3.chr22              45769280 747 +  49145316 I
e chlSab2.chr6               47374695 11 +  50890351 I
e rheMac3.chr19              60522775 11 +  64156825 I

a score=648752.000000
s hg38.chr19_GL949751v2_alt    708527 272 +   1002683 GGGGAACCACAGTCATGACCCTGACATTCCAGATCTTCTAATAGGGGCTCAGTTGTTTATTATGGTTCATGCATTAGCTGA-----------------TCATGCCCTCCATCCTGTGTCTACCTTGTGTTCTTTTATGTAAGTAATTTTGCAGTGTTAAAATCTAGTAAGAGTCGCTTCTTCAGCACCTGCTCAAAGTTCTCAGCTGACACTTG--CTGTAGGGAGACGCCATGTCTATGCGGGATGGGTCCTTCCTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCTT
s panTro4.chr19              59644125 272 +  63644993 GGGGAACCACAGTCATGACCCTGACATTCCAGATCTTCTAATAGGAGCTCAGTTGTTTATTATGGTTCATGCATTAGCTGA-----------------TCATGCCCTCCATCCTGTGTCTACCTTGTGTTCTTTTATGTAAGTAATTTTGCAGTATTAAAATCTAGTAAGAGTCGCTTATTCAGCACTTGCTTAAAGTTCTCAGCTGACACTTG--CTGTAGGGAGACGCTATGTCTATGCGGGGTGGGTCCTTCCTGTAGCCCTGGGCACCCCGGTGTGGTAGGAGCCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56576490 272 +  60714840 GGGGGACCACAGTCATGACCCTGACATTCCAGATCTTCTAATAGGGGCTCAGTTGTTTATTATGGTTCATGCATTAGCTGA-----------------TCATACCCTCCATCCTGTGTCTACCTTGTGTTCTTTTATGTCAGTAATTTTGCAGTATTAAAATCTAGTAAGAGTCGCTTCTTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTG--TTGTAGGGAGACACCATGTCTATGTGGGATGGGTCCTTCCCATAGCCCTGGGCACCCAGGTGTGGTAGGAGCCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103237824 272 - 106955855 GGGGAACCACAGTCATGACCCTGACATTCCAGATCTTCTAATGGGGGCTCAGCTGTTTATTATGGTTCATGCATTAGCTGA-----------------TCATGCCCTCCATCCTGTGTCTACTTTGTGTTCTTTTCTGTGAGTAATCTTGCAGTATTCAAATCTAGTAAGAGTCGCTTCTTCAGCACTTGCTCAAAGTTCTCAGCTGACATTTG--TTGTAGGGAGATGCCATGTCTATGCGGGATGGGTCCTTCCTGTAGCTCTGGGCACCCAGGTGTGGTAGGAGCCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60522786 291 +  64156825 GGGGAACCACAGTCATGATCCTGACATTTCAGATCTTCTAATGAGGGCTTAGTTGTTTATTTTGGTTCATGCATTAGCTGATATTCCATTCACAAAGGTCATGCCCTCCATCCTGTGTCTACTTTGTGTTTTTTTATGTGAGTAATCTTGCAGTATTAAAATCTAGTAAGAGTCACTTATTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTCTTGTAGGGAGATGCCATGTCTATGCGAGATGGGTTCTTCCTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCTT
i rheMac3.chr19             I 11 C 0
s macFas5.chr19              55622617 291 +  59248254 GGGGAACCACAGTCATGATCCTGACATTTCAGATCTTCTAATGAGGGCTTAGTTGTTTATTTTGGTTCATGCATTAGCTGATATTCCATTCACAAAGGTCATGCCCTCCATCCTGTGTCTACTTTGTGTTTTTTTATGTGAGTAATCTTGCAGTATTAAAATCTAGTAAGAGTCACTTATTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTCTTGTAGGGAGATGCCATGTCTATGCGAGATGGGTTCTTCCTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCTT
i macFas5.chr19             I 4 C 0
s papAnu2.chr19              47693958 291 +  51301725 GGGGAACCACAGTCATGACCCTGACATTTCAGATCTTCTAATGAGGGCTCAGTTGTTTATTATGGTTCATGCATTAGCTGATATTCCATTCACAAAGGTCATGCCCTCCATCCTGTGTCTactttgtgttgttttatgtGAGTAATCTTGCAGTATTGAAATCTAGTAAGAGTCGCCTATTTAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTCTTATAGGGAGACGCCATGTCTATGAGGGATGGGTTCTTCCTGTAGCCCTGGGCACTCAGGTGTGGTAGGAGCCTT
i papAnu2.chr19             I 4 C 0
s chlSab2.chr6               47374706 291 +  50890351 GGGGAACCACAGTCATGACCCTGACATTTCAGATCTTCTAATGAGGGCTCAGTTGTTTATTATGGTTCGTGCATTAGCTGATATTCCATTCACAAAGGTCATGCCCTCCATCCTGTGTCTACTTTGTGTTGTTTTATGTGAGTAATCTTGCAGTATTAAAATCTAGTAAGAGTGGCTTATTTAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTCTTATAGGGAGACGCCATGTCTATGTGGGATGGGTTCTTCCTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCTT
i chlSab2.chr6              I 11 C 0
e calJac3.chr22              45769280 747 +  49145316 I

a score=985141.000000
s hg38.chr19_GL949751v2_alt    708799 384 +   1002683 AGAAACGTGGAAA-T-GGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCT-AAGGTAGTGCCTCCTTCTCCCCCAGGTGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCGGCACTGTGGTGTCTGAAGGACAACATGTGACTCTTCAGTGTCGCTCTCGTCTTGGGTTTAAAGAATTCAGTCTGTCCAAAGAAGACGGGATGCCTGTCCCTGAGCTCTACAACAGAATATTCCGGAACAGCTTTCTCATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGT--TGCAGTTCACACCCACACTCCCCCACTGGGTGGTCGGCA---CCCAGCAACCCTGTGGTGATCATGGTCACAGGTCAGAG
s panTro4.chr19              59644397 384 +  63644993 AGAAATGTGGAAA-T-GGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCTTCCTGTCT-AAGGCGGCGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCACTGTGGTGTCTGAAGGACAACATGTGACTCTTCAGTGTCGCTCTCGTCTTGGGTTTAACGAATTCAGTCTGTCCAAAGAAGACGGGATGCCTGTCCCTGAGCTCTACAACAGAATATTCCGGAACAGCTTTCTCATGGGCCCTGTGACCCCAGCACATGCAGGAACCTACAGATGT--TGCAGTTCACACCCACACTCCCCCACTGGGTGGTCGGCA---CCCAGCAACCCTGTGGTGATCATGGTCACAGGTCAGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56576762 385 +  60714840 AGAAACGTGGAAA-TGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACGTCCTTCTCTCT-AAGGTAGTGCCTCCTTCTCCCCCAGATGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCACTGTGGTGTCTGAAGGAGAACATGTGTCTCTTCAGTGTCGCTCTCGTCTTGGGTTTAACAAATTCAGTCTGTCCAAAGAAGACGGGATGCCTGTCCCTGAGCTCTACAACGGAGTATTCCAGAACAGCTTCCTTATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGT--TGGGGTTCACACCCACACTCCCCCACTGGGTGGTCGGCA---CCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103238096 385 - 106955855 AGAAACATGGAAA-TGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCAGCTCCACATCTTCCTCTCT-AAGGTAGTGCCTCCTTCTTCCCCAGGTGGTCAGGACAGGCCCTTCCTCTCTGCCTGGCCCAGCACTGTGGTGTCTCAAGGAGAACACGTGACTCTTCAGTGTCACTGTCGTCTTGGGTCTAACAAATTCAGTCTGTCCAAGGAAGACGGGATGCCTGTCCCTGAGCTCTACAACAGAGTATTCTGGAACAGCTTCCTCATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGT--CGGGGTTTTCACCCACACTCCCCCACTAGGTGGTCGGCA---CCCAGCAACCCCGTGGTGATCATGGTCACAGGTCAGAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60523077 387 +  64156825 AGAAATGTGGAAAGTGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCTGCTCCACATCCTCCTCTCTAAAGGCTGTGCCTCCTTCTCCCCCAGATGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCGCTGTGGTGCCTCAAGGAGAACACGTGAGTCTTCAGTGTCACTCTCATCTTGGGTTTACCATCTTCAGTCTGTACAAGGAAGATGGGGTGCCTGCCCCTGAGCTCTACAACAGAAGATTCTGGAAGGACATCCTCCTGGGCCCTGTGACCCCGGCACACGCAGGGACCTACAGATGT--CGGGGTTCACACCTGCACTCCCCCACTGAGTGGTCGGCT---CCCAGCAACCCCCTGGTGATCACGGTCACAGGTCAGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55622908 387 +  59248254 AGAAATGTGGAAAGTGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCTGCTCCACATCCTCCTCTCTAAAGGCTGTGCCTCCTTCTCCCCCAGATGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCGCTGTGGTGCCTCAAGGAGAACACGTGAGTCTTCAGTGTCACTCTCATCTTGGGTTTACCATCTTCAGTCTGTACAAGGAAGATGGGGTGCCTGCCCCTGAGCTCTACAACAGAAGATTCTGGAAGGACATCCTCCTGGGCCCTGTGACCCCGGCACACGCAGGGACCTACAGATGT--CGGGGTTCACACCTGCACTCCCCCACTGAGTGGTCGGCT---CCCAGCAACCCCCTGGTGATCACGGTCACAGGTCAGAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47694249 387 +  51301725 AGAAATGTGGAAAGTGGGGAGAATCTTCTGagcacagggagggaggggctgctTCACATCCTCCTCTCTAAAGGCTGTGCCTCCTTCTCCCCCAGATGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCGCCGTGGTGCCTCAAGGAGAACACGTGAGTCTTCAGTGTCACTCTCATCTTGGGTTTACCATCTTCAGTCTGTACAAGGAAGATGGGGTGCCTACCCCTGAGCTCTACAACAGAAGATTCTGGAAGGACATCCTCCTGGGCCCTGTGACCTCGGCACACGCAGGGACCTACAGATGT--CGGGGTTCACACCTGAACTCCCCCACTGAGTGGTCGGCT---CCCAGCAACCCCCTGGTGATCACGGTCACAGGTCAGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47374997 387 +  50890351 AGAAATGTGGAAAGTGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCTGCTCCACATCCTCCTCTCTAAAGGCGGTGACTCCTTCTCCCCCAGATGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGTGCTGTGGTGCCTCAAGGAGAACACGTGAGTCTTCAGTGTCACTCTCATCTTGGGTTTACCATCTTCAGTCTGTACAAGGAAGATGGGGTGCCTGCCCCTGAGCTCTACAACAGAAGATTCTGGAAGGACATCCTCCTGGGCCCTGTGACCCCAGCACACGCAGGGACCTACAGATGT--CAGGGTTCACACCTGAACTCCCCCACTGAGTGGTCGGCT---CCCAGCAACCCCCTGGTGATCACGGTCACAGGTCAGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45770027 380 +  49145316 AGAACAGTGGGAA--GAAGGAAAGCCCCCAAGGACAGTGGCGGGTGGGGGGCTCCACACTCCCCTCTCT--AGGCTGCGCCTCCTCCTCTTCCAGGTGCTCTGTACAAACTCTCCCTGTCAGCCCGGCCGAGCCCTGTGGTTCCCCAGGGAGGACGTGTGACTCTCTCCTGTGATTCTCATCTTCGGTTTGTCACATTCAAAATATACAAAACATCTGGGACCCAGGACCGTGAGCTGCACACTGGCCGTTCC---AATGACTTCACCATCAACCCTGTGACCCCAGGACATGCAGGGACCTACAGATGTTCTGGATCTTTCAGCCGCACCTCAC-----AGTGGTCAGCTGTGCACAGCAACTCCCTGATGCTATTGGTCACAGGTAGGAG
i calJac3.chr22             I 747 I 925

a score=1349685.000000
s hg38.chr19_GL949751v2_alt    709183 592 +   1002683 GCTTTCTGTCTGGGCTTCTCACTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGgtgtccatcagggtccaatcatccaggccctggctgtatttggggtaaagggggattcagtacagagaaatagttgctgtggtgggaagaataattgtccccagtgatggctacatggtaatccatgaaccctgtgactatttatgtcatagggcaggggactgaaggggaagatggagctcaggttgttgatgagttgaccttgcgatggggagacagcctggactgtcctgctgtgctcagagtaatcacaagggtcctcatgagaggaggaggaagaggaaagtgggg-ttagagcaacgtcgtgggagggagactccatcagccacagcgggctttgaagatgggggaaggccatgagccacaaaggcagttggcctctaagggctggagaagtcaagggaactgattcttccctgagtctccagaggaaacacagccctgtagatgccttgattttagcccagagagaactgggtccgatttctgttctccagaagtggaaggggtcattgtattctctcctgcc-ccatg
s panTro4.chr19              59644781 592 +  63644993 GCTTTCTGTCTGGGCTTCTCACTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGGCGtccatcagggtccaatcatccaggccccgactgtatttggggtaaagggggattcagtacagagaaatagttgctgtggtgggaagaataattgtccccagtgatggctacatggtaatccatggaccctgtgactatttatgttatagggcaggggactgaaggggaagatggagctcaggttgttgatgagttgaccttgagaaggggagacagcctggactgtcctgctgtgctcagtgtaatcacaagggtcctcatgagaggaggaggaagaggagagtgggg-ttagagcaacgtcgtgggagggagactccatcagccacagcgggctttgaagatgggggaaggccatgagtcacaaaggcaggtggcctctaagggctggagaagtcaagggaactgattcttccctgagtctccagaggaaacacaaccctgcagatgccttgattttagcccagagagaactgggcccgatttctgttctccagaagtggaaggggtcattgtattctctcctgcc-ccatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56577147 594 +  60714840 GCTTTCTGTCTGGGCTTCTCACTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGGTGTCCATCAGGGTCCGATCATCCAGGCCCTGACTgtatttggggtaaagggggattcagtacagagaaataggtgctgtggtgggaagaataattgtccccagtgatggctacatggtaatccatggaccctgtgactatttatgttatagggcaggggactgaaggggaaggtggagctcagtttgttgatgagttgaccttgagatggggagacagcctggactgtcctgctgtgctcagtgtaatcacaagggtcctcatgacaggaggaggaagaggagagtggggattagagcagcgtagtgggagggagactccatcagccacagtgggctttgaagatgggggaaggccatgagccacaaaggcaggtggcctctaagggctggagaagtcaagggaactgattcttccctgagtctccagaggaaacacagccctgaagacgccttgattttagcccagagagaactgggtccgatttctgttctccagaagtggaaggggtcgttgtattctctcctgccgccatg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103238481 594 - 106955855 GCTATCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGACATCCATCAGGGTCCGATCATCCAGGCCCCGACTCTATTTGGGGTAAAGGGGGATTCAGTACAGAGAAATAGGTGCTATGGtgggaagaataattgtccccaatgatggctacatggtaatccatggaccctgtgactatttatgttatagggcaggggactgaaggggaagatggagctcaggttgttgatgagttgaccttaagatggggagatggcctggactgtcctgctgtgctcagtgtaatcacaagggtcctcatgagaggaggaggaagaggagagtggggattacagcatcgtagtgggagggagactccatcagccacagcgggctttgaagatggaggaaggccatgagccacaaaggcaggtggcctctaagggctggagaagtcaagggaactgattcttccctgagtctccagaggaaacacagccctgaagacgccttgattttagcccagagagaactgggtccgatttctgttctccagaagtggaaggggtcATTGTATTCTCTCCTGCCACCATG
i nomLeu3.chr10             C 0 M 8807
s rheMac3.chr19              60523464 584 +  64156825 GGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCACCAGGGTCCCATCACCCAGGACCTGACTGTCTTTAGGGTAAAGggggattcagtacagaaaaataggtactgtggtgggaagaataattgtccccagttatggctacatggtaatcagtggaccctgtgactctttatgttatagggcaggggactgaaggggaagatggagctcaggttgttgatgagttgaccttgagatggggagacgtcctggactgtcccactgggctcagtgtaatcacaagggaccacatgagaggaggaggatgaggagagtggggattagaacagcatagtgggagggagact--------cactacaggctttgaaggtgaaggaaggccacgaaccatgaaggcaggtgg-ctctaagggctggagaagtcaagggaactgattc-tccctcagtctccagtggaagcacagccctgcagatgccttgattttagcccagagagaactgggtcagatttctgttctccattagtagaaggggttattgtattctctcctgccaccatg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55623295 584 +  59248254 GGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCACCAGGGTCCCATCACCCAGGACCTGACTGTCTTTAGGGTAAAGggggattcagtacagaaaaatagatactgtggtgggaagaataattgtccccagttatggctacatggtaatcagtggaccctgtgactctttatgttatagggcaggggactgaaggggaagatggagctcaggttgttgatgagttgaccttgagatggggagacgtcctggactgtcccactgggctcagtgtaatcacaagggaccacatgagaggaggaggatgaggagagtggggattagaacagcatagtgggagggagact--------cactacaggctttgaaggtgaaggaaggccacgaaccatgaaggcaggtgg-ctctaagggctggagaagtcaagggaactgattc-tccctcagtctccagtggaagcacagccctgcagatgccttgattttagcccagagagaactgggtcagatttctgttctccattagtagaaggggttattgtattctctcctgccaccatg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47694636 585 +  51301725 GGCTCCTGTCTGGGCTTCTCCTTGTCCCAACTCCTGAATCCCCGAGCTTCTGCTGGGGGTGTCCACCAGGGTCCCATCACCCAGGACCTGACTGTATTTGGGGTAAAGGGGGATTCAGTACAGAAAAATAGGTACTGTGATGGGAAGAAAAATTGTCCCTAGTTATGGCTACATGATAATCCGTGGACCCTATGACTGTTTATGTTATAGGGCAGAGGACTGAAGGGGAAGATGGAGCTCAGGTTGTTGATGAGTtgaccttgagatggggagacGACCTGGACTGTCCCGCTGGGCTCAGTGGAATCACAAGGCACCACatgagaggaggaggatgaggagagtGGGGATTAGAGCAGCATAGTGGGAGGGAGACT--------CACTACAGGCTTTGAAGGTGAAGGAAGGCCACGAGCCATGAAGGCAGGTGGCCTCTAAGGGCTGGAGAAGTCAAGGGAACTGATTC-TCCCTGAGTCTCCAGTGGAAGCACAGCCCTGCAGATGCCTTGGTTTTAGCCCAGAGAGAACTGGGTCAGATTTCTGTTCTCCATAAGTGGAAGGGGTTATTGTATTCTCTCCTGCTACCATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47375384 585 +  50890351 GGCTCCTGTCTGGGCTTCTCCTTGTCCCATCTCCTGAATCCCAGAGCTTCTGCTGGGGgtatccaccagggtcccatcacccaggacctgactgtatttggggtaaagggggattcagtacagagaaataggtactgtgatgggaagaataattgtccctagttatggctacatggtaatccgtggaccctatgactatttatgttatagggcagaggactaaaggggaagatggagctcaggttgttgataagttgaccttgagatggggagacggcctggactgtcccgctgggctcagtggaatcacaagggaccacatgagaggaggaggatgaggagagtggggattagagcagcacagtgggagggagact--------cactacaggctttgaaggtgaaggaaggccacgagccatgaaggcaggtggcctctaagggctagagaattcaagggaactgattc-tccctgagtctccagtggaagcacagccctgcagattccttgattttagcccagagagaactgggtcagatttctgttctcctttagtggaaggggttattgtattctctcctgccaccgtg
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45770407 925 +  49145316 I

a score=1073513.000000
s hg38.chr19_GL949751v2_alt    709775 590 +   1002683 tttgtgacaattttctccagcagcaacaggaaaccaacacaggaacccaggtgaagcacaagttaagaaaccaaacaaggagaaggttggctacactgattttagcatgggtgggatactgatgctaccaccaggctcgatccacatagggaggggttgatgctcctggaaccagcaccaggggccaccctatggaagctggggccatggagAAGGCACAGACATGACAGGAGAGGCTCCCAATCCCCATCAGGAACAGGGACACTGATGCCTGCCTTACTGATGAGTTCGTACCTCCTGCCAGCCTTTCCAATCTGTCCAAAAGAGATTGATTCAGGCTGCTAAGAGCCTGGACATGCAGCCTGTCGTGGTTCCTCTTCCACCCCTACATAAACAC-AGGAAAGAGATTAGTGGGAAACAGATACAACAGCCTAAGAGGTGACACTGAGCACAGTGGGAAGGGAATCAGGGCTACTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGGAGGGACCTGCAACAGGGGTTATGGGCAC--AAAAGAACACGGAGACACAGAGAGGAAGGAGAGAGATAGACACCATG
s panTro4.chr19              59645373 591 +  63644993 tttgtgacaattttctccagcagcaacaggaaaccaacacaggaacccaggtcaagcacaagttaagaaaccaaacaaggagaaggttggctacactgattttagcacgggtaggatactgatgctaccaccaggctcgatccacatagggaggggttgatgctcctggaaccagcaccaggggccaccctatggaagctggggccatggagAAGGCACAGACATGACAGGAGAGGCTCCCAATCCCCATCAGGAACAGGGACACTGATGCCTGCCTTACTGATGAGTTCGTACCTCCTGCCGGCCTTTCCAATCTGTCCAAAAGAGATTGATTCAGGCTGCTAAGAGCCTGGACATGCAGCCTGTCGTAGTTCCTCTTCCACCCCCACATAAACACCAGGAAAGAGATTAGTGGGAAACAGATACAACAGCCTAAGAGGTGACGCTGAGCACAGTGGGAAGGGAATCAGGGCTACTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGGAGGGACCTGCAACAGGGGTTATGGGCAC--AAAAGAACACGGAGACACAGAGAGGAAGGAGAGAGATAGACACCATG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56577741 592 +  60714840 tttgtgataattttctccagcagcaacaggaaaccaacacaggaacccaggtgaaggacaagttaagaaaccaaacaaggagaa-gttggctacactgattttagcacgggtgggatactgatgctaccaccaggctcgatccacatagggaggagttgatgctcctggaaccagcaccaggggccaccttatggaagctggggccaTGGAGAATGCACAGACATGACAGGAGAGGCTCCCAATCCCCATCAGGAACGGGGACACTGATGCCTGCCTTACTGATGAGTTCATACCTCCTGCCGGCCTTTCCAATCTGTCCAAAAGAGATTGATTCAGGCTGCTAAGAGCCTGAACATGCAGCCTGTCGTGGTTCCTCTTCCACCCCCACATAAACACCAGGAAAGAGATTAGTGGGAAAGAGATACAACAGCCTAAGAGATGACGCTAAGCACAGTGGGAAGGGAATCAGGGCTACTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGCAGGGACCTGCACCAGGGGTTATGGGCACAGAAAAGAACACGGAGACACAGAGAGGTAGGAGAGAGATAGACACCATG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60524048 592 +  64156825 tttgtgataattttctacagcagcaacaggaaaccaacacaggaactcaggtcaaggacaagttaagaaaccaaacaaggagaaggttggctacactgatttcagcacaggcggaatactgatgctaccaccaggctcgatccacagaggaaggggttgattctcctggaaccagcactaggggccaccctatggcagctgggaccacggaaaaggcacagacatggcaggagAGGCTCCCAACCCCCATCAGGAACAGGGACATTGGTACCTGCCTTACTGATGAGTTCACACCTCCTGCCAGCCATTCCCATTTGTCCAAAAGAGATTGATTCAGGCTGCTGAGAGCCTGGACATGCAGCCTGTCGTGGTTCCTCTTCCAGCCCCACATAAACACCAGCAAAGAGATTAGTGGGAAACAGATACAACAGCCTAAGAGATGACACTGAGCCCAGTGGGAAGGGAATCAGGGGTCCTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGGAGGGACCTGCACCA-GGGTTATGGGCACAGAAAAGAACATGGAGACACAGACAGGGAGGAGAGAGATAGACACCATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55623879 592 +  59248254 tttgtgataattttctacagcagcaacaggaaaccaacacaggaactcaggtcaaggacaagttaagaaaccaaacaaggagaaggttggctacactgatttcagcacaggcggaatactgatgctaccaccaggctcgatccacagaggaaggggttgattctcctggaaccagcactaggggccaccctatggcagctgggaccacggaaaaggcacagacatggcaggagAGGCTCCCAACCCCCATCAGGAACAGGGACATTGGTACCTGCCTTACTGATGAGTTCACACCTCCTGCCAGCCATTCCCATTTGTCCAAAAGAGATTGATTCAGGCTGCTGAGAGCCTGGACATGCAGCCTGTCGTGGTTCCTCTTCCAGCCCCACATAAACACCAGCAAAGAGATTAGTGGGAAACAGATACAACAGCCTAAGAGATGACACTGAGCCCAGTGGGAAGGGAATCAGGGGTCCTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGGAGGGACCTGCACCA-GGGTTATGGGCACAGAAAAGAACATGGAGACACAGACAGGGAGGAGAGAGATAGACACCATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47695221 593 +  51301725 TTTGTGATAATTTtctacagcagcaacaggaaaccaacacaggaacTCAGGTCAAGGACAAGTTAAGAAACCAAACAAGGAGAAGGTTGGCTACACTGATTTCAGCACAGGTGGAATACTGTTGCTACCACCAGGCTTGATCCACACAGGGAGGGGTTGATTCTCCTGGAACCAGCACCAGGGGCCACCCTATGGCAGCTGGGACCATGGAAAAGGCACAGACTTGGCAGGAGAGGCTCCCAACCCCCATCAGGAACAGGGACATTGATGCCTGCCTTACTGATGAGTTCACACCTCCCGCCAGTCATTCCAATTTGTCCAAAAGAGATTGATTCAAGCTGCTGAGAGCCTGGACGTGCAGCCTGTCATGGTTCCTCTTCCAGCCCCACATAAACACCAGCAAAGAGATTAGTGGGAAACAGATACAACAGCCTAAGAGATGACACTGAGCCCAGTgggaagggaatcaggggtcctagagacagagagacagggaagagggagggagacagatggagggACCTGCACCAGGGGTTATGGGTACAGaaaaaaaCATGGAGACACAGACAGGGAGGAGAGAGATGGACACCATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47375969 593 +  50890351 tttgtgataattttctacagcagcaacaggaaaccaacacaggaactcaagtcaaggacaagttaagaaaccaaacaaggagaaggttggctacactgatttcagcacaggcggaatactgatgctaccaccaggctcgatccacacagggaggggttgattctcctggaaccagcaccaggggccaccctatggcagctgggaccatggaaaaggcacagacatggcaggagAGGATCCCAACCCCCATCAGGAACAGGGACATTGATGCCTGCCTTACTGATGAGTTCACACCTCCCGCCAGCCATTCCAATTTGTCCAAAAGAGATTGAGTCAGGCTGCTGAGAGCCTGGACGTGCAGCCTGTCATGGTTCCTCTTCCAGCCCCACATAAACACCAGCAAAGAGATTAGTGGAAAACAGATACAACAGCCTAAGAGATGACACTGAGCCCAGTGGGAAGGGAATCAGGGGTCCTAGAGACAGAGAGACAGGGAAGAGGGAGGGAGACAGATGGAGGGACCTGCACCAGGGGTTATGGGCACAGAAAAGAACACGGAGACACAGACAGGGAGGAGAGAGATAGACACCATG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45770407 925 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M

a score=802472.000000
s hg38.chr19_GL949751v2_alt    710365 388 +   1002683 GAGGGGAAGCCTCACTTATTTCAGGTCCCATGAATGGGATGAGAAAGGGAGACGCCTTCTGAACTCA-CAACCTCTCTTCTTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCGGGAGAGACGGTCATCCTGCAATGTTGGTCAGATGTCAGTTTTGAGCGCTTCCTTCTGCACAGAGAGGGGATCACTGAGGACCCCTTGCGCCTCGTTGGACAGCTCCACGATGCGGGTTCCCAGGTCAA------CTATTCCATGGGTCCCATGACACCTGCCCTTGCAGGGACCTACAGATGCTTTGGTTCTGTCACTCACTTACCCTATGAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTGGTCGTAGGTGAG
s panTro4.chr19              59645964 388 +  63644993 GAGGGGAAGCCTCACTTATTTCAGGTCCCATGAATGGGATGAGAAAGGGAGACGCCTTCTGAACTCA-CAACCTCTCTTCTTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCGGGAGAGACGGTCATCCTGCAATGTTGGTCAGATGTCAGGTTTGAGCGCTTCCTTCTGCACAGAGAGGGGATCACTGAGGACCCCTTGCGCCTCATTGGACAGCTCCACGATGCGGGTTCCCAGGTCAA------CTACTCCATGGGTCCCATGACACCTGCCCTTGCAGGGACCTACAGATGCTTTGGTTCTGTCACTCACTTACCCTATGAGTTGTCGGCTCCCAGTGACCCTCTGGACATCGTGGTCATAGGTGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56578333 388 +  60714840 GAGCGGAAGCCTCACTTATTTCAGGTCCCATGAATGGGATGAGAAAGGGAGACACCTTCTGAACTCA-CAACCTCTCTTCTTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGGAGAGACGGTCATCCTGCAATGTTGGTCAGATATCAGGTTTGAGCACTTCCTTCTGCACAGAGAGGGGACCACTGAGGACCCCTTGCGCCTCGTTGGAGAGCTCCACGATGCAGGTTCCCAGGTCAA------CTATTCCATGGGTCCCATGACACCTGCCCTTGCAGGGACCTACAGATGCTTTGGTTCTGTCACTCACTTACCCTATGAGTTGTCGGCTCCCAGTGACCCTCTGGACATCGTGATCATAGGTGAG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60524640 388 +  64156825 GAGGGGAAGTCTCACTTATTCCAGGTCCCATGAATGGGATGAGAAAGGGAGACGCCATCTGAACTCA-CAACCTCTCTTCTTAGGAGTCTACAGAAAGCCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGGAGAGATGGTCGTCCTGCAATGTTGGTCAGATATGAGGTTTGAGCATTTCCTTCTGCACAGAGAGGGGATCACTGAGGACCCCTTGCACCTCACTGGACAGCTCCATGATGGGGGTTCCCAGGCCAA------CTCTTCCGTGGGTCCCATGATACCTGCCCTTGCAGGGACCTACAGATGTTTTGGTTCTGTCGCTTACTCCCCCTATGAGTGGTCAGCTCCCAGTGACCCTCTGGACATCGTGATCATAGGTGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55624471 388 +  59248254 GAGGGGAAGTCTCACTTATTCCAGGTCCCATGAATGGGATGAGAAAGGGAGACGCCATCTGAACTCA-CAACCTCTCTTCTTAGGAGTCTACAGAAAGCCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGGAGAGATGGTCGTCCTGCAATGTTGGTCAGATATGAGGTTTGAGCATTTCCTTCTGCACAGAGAGGGGATCACTGAGGACCCCTTGCACCTCACTGGACAGCTCCATGATGGGGGTTCCCAGGCCAA------CTCTTCCGTGGGGCCCATGATACCTGCCCTTGCAGGGACCTACAGATGTTTTGGTTCTGTCGCTTACTCCCCCTATGAGTGGTCAGCTCCCAGTGACCCTCTGGACATCGTGATCATAGGTGAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47695814 388 +  51301725 GAGGGGAAGCCTCACTTATTCCAGGTCCCATGAATGGGATGAGAAAGGGAGACGCCATCTGAACTCA-CAACCTCTCTTCTTAGGAGTCTACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGGAGAGACAGTCATCCTGCAATGTTGGTCAGATATGAGGTTTGAGCATTTCCTTCTGCACAGAGAGGGGATCACTGAGGACCCCTTGCACCTCATTGGACAGCTCCATGATGGGGGTTCCCAGGCCAA------CTATTCCGTGGGTCCCATGATGCCTGCCCTTGCAGGGACCTACAGATGTTTTGGTTCTGTCGCTCACTCCCCCTATGAGTGGTCAGCTCCCAGTGATCCACTGGACATCGTGATCATAGGTGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47376562 388 +  50890351 GAGGGGAAGCCTCACTTATTCCAGTTCCCATGAATGGGATGAGAAAGGGAGACGCCATCTGAACTCA-CAACCTCTCTTCTTAGGAGTCTACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGGAGAGACGGTCATCCTGCAATGTTGGTCAGATATGAGGTTTGAGCGTTTCCTTCTGCACAGAGAGGGGATCACTAAGGACCCCTTGCACCTCGTTGGACAGCTCCATGATGGGGGTTCCCAGGCCAA------CTATTCCGTGGGTCCCATGATACCTGCCCTTGCAGGGACCTACAGATGTTTTGGTTCTGTCGCTTACTCCCCCTATGAGTGGTCGGCTCCCAGTGACCCTCTGGACATCGTGATCATAGGTGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45771332 390 +  49145316 GAGGGAGAGCTTCAC---CCTGAGGTCCCAGGTGAGGGGTGAGGAA-GGAGAC-CCCTGTGAATTCCTCTGTCTTTGCTCCCAGGTGCATTCACAAAACCTTCCATCTCAGCCCACCCAAGCTCCCTGGTGGCTGCGGGAGTTAGGGTGACCGTGAGCTGTCACTCGGAGCTGGCATTTGATGAGTTTATCTTATACAAAGATGGGCACACACAGCATTCCCAGGAACTTGACACGAGGTTGGAGGCTGGGACTTACTACGTCAAGGCTGTCTTTTGCCTGGGTCCTGTCACGCCGGCCCAGGCAGGAGCCTACAGATGCTGTGGTTCTTTCAGTCACTCCCGCTATGAGTGCTCGGCTCCCAGCGACCCCCTGGAGATTGTGATCACAGGTGAG
i calJac3.chr22             I 925 I 637
e nomLeu3.chr10             103239075 8807 - 106955855 M

a score=1922884.000000
s hg38.chr19_GL949751v2_alt    710753 1093 +   1002683 AGAATACAGACCTGCCTCTCACCCTTGCTGGGAGATGGAGTGAATGATCTAGGACTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGGTTCCTATGGAGAGAAAGTGACTTGGTGAGGTCTGTACCAACAAAGGCAGAGAAACAGGAGACACAAGTACAGACCTCATGTCATAACATAGAAGCCAGACACAGGGGCCATACAAGGTGTTAGAAAAAGAGATAAAGAGGT-AAAGAAGA--CACAGAGAGACAGATATATCCCAGAGAGAGGTGTCCTTCTATGCTGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCCATTCTGTTTTACCTCTACAAAGTGTTCTCTCCCAGGAGAACCCAAAGAGACACATCTATCTGGCCTGAGTTGGGCCGTGTGGCCCCAGGCTGGTGGCACCTACAGATGCTGTGTTTATTCTTAAACCTCTGCCTTCCGTGCAGTGGAGCTGTCATCGTCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGTTGTGAGTTCCTGGAGTCCCCATACTGGATTCTGAGGCTCATATTCAAATAGCACCACATGTTATAGGATTACTGAGAACAAAAGCCCACAGAGAGACACGGAGTGAAATCAGGGAAATCAAAAAGCAAAGACATGAACACACACACAGAATGAGCCAGAAGAAGGGAATTGAGAGACTCACAGACACATAAAGAGACAGAAAAAGAGGGCAGAGAAGTGGAGCGTATGATGGAAGGAAGCAGAGAAAAGCCCTAAAATCAGAGCCCTGAGGGAGGGGCACAAAGACAGGGAAAGATAAAGATGTGGGGATGGATTGCAGAGACTCCAAAAGGGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGAGAGAGACagatgatagatggatagatagatatagatagatgaaagataaaaggtatatgatagataatagagagacaggtgatagacaaatagatgatgaatg------actgatagatgatatagatagacaagt--------agaaagacagacagatgatatataaatagatatagagagatagaaagacag----at
s panTro4.chr19              59646352 1081 +  63644993 AGAATACAGACCTGCCTCTCACCCTTGCTGGGAGAGGGAGTGAATGATCTAGGACTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGGTTCCTATGGAGAGAAAGTGACTTGGTGAGGTCTGTACCAACAAAGGCAGAGAAACAGGAGACACAAGTACAGACCTCATGTCATAACATAGAAGCCAGACACAGGGGCCATACAAGGTGTTAGAAAAAGAGATAAAGAGGT-AAAGAAGA--CACAGAGAGACAGACATGTCCCAGAGAGAGGTGTCCTTCCATGCTGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCCATTCTGTTTTACCTCTACAAAGTGTTCTCTCCCAGGAGAACCCAAAGAGACACATCTATCTGGCCTGAGTTGGGCCCTGTGGCCCCAGGCTTGTGTCACCTACAGATGCTGTGTTTATTCTTAAACCTCTGCCTTCCATGCAGTGGAGCTGTCATCGTCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGCTGTGAGTTCCTGGAGTCCCCAGACCGGATTCTGAGGCTCATATTCAAATAACACCACATGTTATAGGATTACTGAGAACAAAAGCCCACAGAGAGACACGGAGTGAAATCAGGGAAATCAAAAAGCAAAGACATGAACACACACACAGAATGAGCCAGAAGAAGGGAATTGAGAGACTCACAGACACATAAAGAGATAGAAAAAGGGGGCAGAGAAGTGGAGCGTATGATGGAAGGAAGCAGAGAAAAGCCCTAAAATCAGAGCCCTGAGGGAGGGGCACAAAAACAGGGAAAGATAAAGATGTGGGGTTGGATTGCAGAGATTCCAAAAGGGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGAGAGagacagatgatagatgggtagatagatatagatagatgaaagataaaaggtagatgatagataatagagagataggtgatagataaatagatgatgaatg------acagatagatgatatagatagataagt------------agacagacagatgatatataaatagacatagagagat--------ag----at
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56578721 1101 +  60714840 AGAATCCAGACCTGCCTCTCACCCTTGCTGGGACAGGGAGTGAATGATCTAGGATTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGGTTCCTATGGAGAGAAAGTGACTTGGTGAGGTCTGTACCAACAAAGGCAGAGAAACTGGAGACACAAGTACAGACCACATGTCATAACATAGAAGCCAGACACAGGGGCCACACAGGGTGTTAGAAAAAGAGATAAAGAGGT-AAAGAAGA--CACAGAGAGACAGACATGTCCCAGAAAGAGGTGTCCTTCCATGTTGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGATTCCATTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAAGAGACACATCTATCTGGCCTGAGTTGGGCCCTGTGGCCCCAGGCTTGTGGCACCTACAGATGCTGTGTTTATTCTTAAACCTCTGCCTTCCATGCAGTGGAGCTGTCATCATCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACAGCAACCCCTGTATGCTGTGAGTTCCTGGAGTCCCCAGACTGGATTCTGAGGCTCATATTCAAATAACACCACATGTTATAGGATTGCTGAGAACAAAAGCCCACAGAGAGACACGGACTGAAATCAGGGAAATCAAAAAGCAAAGACATGAACACACACACAGAATGAGCCAGAAGAAGGGAATTGAGAGACTCACAGACACATAAAGAGATAGAAAAAGAGGGCAGAGAAGTGGAGCATATGATGGAAGGGAGCAAAGAAAAGCCCTAAAATCAGAGCCCTGAGGGAGGGGCACAAAAACAGGGAAAGATAAAGATGTGGGGATGGATTGCAGAGATTCCAAAAGGGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGAGAGAGACagatgatagatggatagatagatatagatagatgaaagataaaagatagatgatagataatagagagataggtgatagataaatagatgatgaatg------actgatagatgatatagatagataagcagatagatagaaagacagacagatgttatataaatagacatagagagatagaAAGACAG----AT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60525028 1081 +  64156825 AGAATCCAGACCTGCCTCTCACCCTTGCAGGGACAGGGAGTGAATGATCTAGCACCGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGATTCTCATGGAGAGAAAGTGACTTCATGAGGTCTGTACCAACAGAGGTAGAGAAACAGGAGACACAAGTACAGACCGCACATCATAACGTAGAAGCCAGACACAGGGACCATACAGCGTGTTAGGAAAAGAGATAAAGAGGT-AAAGAAGACACACAGAGAGACAGACATGTCCCAGA-AGAGGTGTCCTTCCATGCCGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCTGTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAAGAGACACGTCTATCTGGCCTGAGTTGGACCCTGTGGCCCCAGGCTTGTGGCACCTACAGATGCCATGTTTATTCTTAAACCTCTGCCTTCCATGCAGTGGAGCTGTCATCGTCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGCTGTGAGTTCCTGGAGTCCCCAGACTGGATTCTGAGGCTCATATTCAAATAACACCACATGTTATAGGATTACTGAGAACAAAAGCCCACAGAGAGACACGGAGTGAAATCAGGGAAACCAAAAAGCGAAGACATGAACACACACACAAAATGAGCCAGAAGAAGGGAATTGAGAGACTCACAGACATATAAAGAGATAGAAAAAGAGGGCAGAGCAGT-GAGCATATGATGGAAGGGAGCAGAGAAATGCCCTAAAATCAGAGCCCTGAGGGAGGGGCACGAAAACAGGGAAAGATAAAGATGTGGAGATGGATTGCAGAGATGCCAAAAGAGAACTAGAGAGACTGTGAGGCAGAGAA----AAGGAGAAGGagaaagacagatga--------tagatagatataaatggatgaaagataagagatagatgatagataacagagggataggtgatagataaatagatGATGAATG------ACTGATagacgatatagagagagaagt--------agatagatagacagatgatacataaagagacatagagagacagaaagacagat----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55624859 1079 +  59248254 AGAATCCAGACCTGCCTCTCACCCTTGCAGGGACAGGGAGTGAATGATCTAGCACCGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGATTCTCATGGAGAGAAAGTGACTTCATGAGGTCTGTACCAACAGAGGTAGAGAAACAGGAGACACAAGTACAGACCACACATCATAACGTAGAAGCCAGACACAGGGACCATACAGCGTGTTAGGAAAAGAGATAAAGAGGT-AAagaagacacacagagagacagacaTGTCCCAGA-AGAGGTGTCCTTCCATGCCGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCTGTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAAGAGACACGTCTATCTGGCCTGAGTTGGGCCCTGTGGCCCCAGGCTTGTGGCACCTACAGATGCCATGTTTATTCTTAAACCTCTGCCTTCCATGCAGTGGAGCTGTCATCGTCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGCTGTGAGTTCCTGGAGTCCCCAGACTGGATTCTGAGGCTCATATTCAAATAACACCACATGTTATAGGATTACTGAGAACAAAAGCCCACAGAGAGACACGGAGTGAAATCAGGGAAACCAAAAAGCGAAGACATGAACACACACACAAAATGAGCCAGAAGAAGGGAATTGAGAGACTCACAGACATATAAAGAGATAGAAAAAGAGGGCAGAGCAGT-GAGCATATGATGGAAGGGAGCAGAGAAATGCCCTAAAATCAGAGCCCTGAGGGAGGGGCACGAAAACAGGGAAAGATAAAGATGTGGAGATGGATTGCAGAGATGCCAAAAGAGAACTAGAGAGACTGTGAGGCAGAGAA----AAGGAGAAGGagaaagacagatga--------tagatagatataaatggatgaaagataagagatagatgatagataacagagagataggtgatagataaatagatgatgaatg------actgatagacgatatagatagagaagt--------agatagatagacagatgatacataaagagacatagagagacagaaagacag------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47696202 1086 +  51301725 AGAATCCAGACCTGCCTCTCACCCTTGCAGGGACAGGGAGTGAATGATCTGGGACTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGATTCTCATGGAGAGAAAGTGACTTCATGAGGTCTGTACCAACAGAGGTAGAGAAACAGGAGACACAAGTACAGACCACACGTCATAACGTAGAAGCCAGACACAGGGACCATACAGCGTGTTAGGaaaagagataaagaggt-aaagaagacacacagagagacagacatgtcccagagagagaTGTCCTTCCATGCTGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCCATTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAAGAGACACGTCTATCTGGCCTGAGTTGGGCCTTGTGGCCCCAGGCTTGTGGCACCTACAGATGCCATGTTTTTTCTTaaacctctgccttccatgcAGTGGAGCTGTCATCGTCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGCTGTGAGTTCCTGGAGTCCCCAGACTGGATTCTGAGGCTCATATTCAAATAACACCACACGTTATAGGATTACTGAGAACAAAAGCCCACAGAGAGACATGGAGTGAAATCAGGGAAATCAAAAAGCgaagacatgaacacacacacagaatgagcCAGAAGAAGGGAATTGAGAGACTCACAGACacataaagagatagaaaaagagggCAGAGCAGT-GAGCATATGATGGAAGGGAGCAGAGAAATGCCCTAAAATCAGAGCCCTGAGGGAGGGGCACAAAAACAGGGAAAGATAAAGATGTGGGGATGGATTGCagagatgccaaaagagaactagagagactgagaggcagagaa----aaggagaaggagaaagacagacga--------tagatagatataaatggatgaaagataagagatagatgatagataacagagagataggtgatagataaatagatgatgagtagacgatatagatagatgatatagatagagaagt--------agatagatagacagatgatacataaatagacatagagagacagaaagacag------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47376950 1070 +  50890351 AGAATCCAGACCTGCCTCTCA-CCTTGCAGGGACAGGGAGTGAATGATCTAGGACTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGATTCTCATGGAGAGAAAGTGACTTCATGAGGTCTGTACCAACAGAGGTAGAGAAACAGGAGACATAGGTACAGACTGCACGTCATAACATAGAAGGCAGACACAGGGGCCATACAGGGTGTTAGGAAAAGAGATAAAGAGGTAAAAGAAGACGCACAGAGAGACAGACATGTCCCAGAGAGAGATGTCCTTCCATGCTGACTTTGTTCAGAGACCAGGCACAGGTTAGAAGGTTCCATTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAAGAGACACGTCTATCTGGCCTGAGTTGGGCCCTGTGGCCCCAGGCTTGTGGCACCTACAGATGCCGTGTTTATTCTTAAACCTCTGCCTTCCATGCAGTGGAGCTGTCATCGTCCCAGGACACCATGGCCCCAGGTGAGGGAGCAGAACACCAACCCCTGTATGCTGTGAGTTCCTGGAGTCCCCAGACTGGATTCTGAGGCTCATATTCAAATAACACCACACGTGATAGGATTACTGAGAACAAAAGCCCACAGAGAGACACGGAGTGAAATCAGGGAAACCAAAAAGCGAAGACATGAACACACACACAGAATGAGCCACAAGAAGGGAATTGAGAGACTCACAGACATATAAAGAGATAGAAAAAGAGGGCAGAGCAGT-AAGCATATGACGGAAGGGAGCAGAGAAATGCCCTAAAATCAGAGCCCTGAAGGAGAGGCACAAAAACAGGGAAAGATAAAGATGTGGGAATGGATTGCAGAGATGCCAAAAGAGAACTAGAGAGACTGAGAGGCAGAGAA----AAGGAGATGGagaaagacagatga--------gcgatagatataaatggatgaaagataagagatagatgatagataacagagagataggtgatagataa----atgatgaatg------actgatagatgatatagatagataagt--------agat--------agatgatacataaatagacatagtgagacagaaagacgg--at--
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45771722  637 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M

a score=541768.000000
s hg38.chr19_GL949751v2_alt    711846 462 +   1002683 aaacacatgatgatagatggatagatgcatacatacatacattgattgatagatgatagataacagagagataggtcatagatacacagatgatgatagatgatag----atacatacatagataaatgatagatcgatcaatagatagtagatagaaatatgcagaaagttatgagcaagacagaaagtgagagactcagaattaaagaaagaggaagatcaagtcaaccagtccaaggag---------ggtcagagagaataaaatggtacaaaaaaagaaaacatagctagggatggagaagTGAGGTCagagacctagagagacagagaaggtggaaggaggaaatagacatgaagagagatgggggtggagggtgagagagagaaagagagCATTAAGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGAGAGCTGTGACAAGGAAGAACCTCCCTGAGG
s panTro4.chr19              59647433 461 +  63644993 aaacacatgatgatagatggacagatgcatacatacatacattgattgatagatgatagataacagagagataggtcatagatacacagatgatgatagatgatag----atacatacatagataaatgatagatcaatcaatagataatagatagaAATATGCAGAAAATTGTGAACAAGACAGAAAGTGAGAGACTGAGACTTAAAGAAAGA-GAAGATCAAGTCAACCAATCCAAGAAG---------GGTCAGAGAGAATAAAACAGTACAAAAAAAGAAAACATAGCTAGGGATGGAGAAGTGAGGTCAGAGACCTagagagagagagaaggtggaaggaggaaatagacatgaagagagatgggggtggagggtgagacagagaaagagagCATTAAGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56579822 451 +  60714840 AAACACATGATgatagatggatagatgcatacatgcatacattgattgatagatggtagataacagagagataggtcatagatacacagat-------gatgatag----atacatacatagataaatgatagatcgatcaatagata----atagaAATATGCAGAAAGTTATGAACAAGACAGAAAGTGAGAGACTCAGAATTAAAGAAAGAGGAAGATCAAGTCAACCCATCCAAGGAG---------GGTCAGAGAGAATAAAATCATACAAAAAAAGAAAACATAGCTAGGGATGGAAAAGTGAGGTCAGAGACCTAGACAGACAGAGAAGGTGGAAGGAGGAAATAGACATGAAGAGAGATGTGGGTGGAGGGTGAAAGAGAGAGAGAGAGCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55625938 449 +  59248254 --acacgtgatgatagatagatggatagatacatacatacattgattgatagatgatagataacagagagagaggtcatagatgcacagatgacgatagatgatag----atacatacatagataattgatagatcgatcaatagataatagatagaAATATGCAGAAAGTTATGAATAAGACAGAAAATGAGAGACTCAGAATTAAAGAAAGAGGAAGATCAAGTCAACCAATCCAAGTAGGGTCAGAAAGGTCAGAAATAATAAAATGGTAC-AAAAGAGAAAACATAGATAGGGATGGGGAAGTGAAGTC----------agagacagagaaggtggaaggaggagacagacatgaagagagacg-gggtggagggtg--------agagagagCATTAGGCCATAGAGCAGGGGAGTGAGTTCTCAGTTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47697288 453 +  51301725 --acacgtgatgatagatagatggatagatacatacatacattgattgatagatgatagataacagagagagaggtcatagatacacagatgatgatagatgatagatacatacatacatagataattgatagatcgatcaatagataatagatagaaataTGCAGAAAGTTATGaataagacagaaaatgagagactcagaattaaagaaagaggaagatcAAGTCAACCAATCCAAGTAGGGTCAGAAAggtcagaaataataaaatggtac-aaaaaagaaaacatagatagGGATGGGGAAGTGAGGTC----------agagacagagaaggtggaaggaggagacagacatgaagagagacg-gggtggagggtg--------agagagagcattaggCCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGATGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47378020 462 +  50890351 agacacgtgatgatagatagatggatagatacatacatacattgattgatagatgatagataacagagagagaggtcatagatacacagatgatgatagatgatagatacatacatacatagataattgatagatcgatcaatagataatagatagaAATATGCAGAAAGTTATGAATAAGACAGAAAATGAGAGACTCAGAATTAAAGAAAGAGGAAGATCAAGTCAACCAATCCAAGTAG---------GGTCAGAAATAATAAAATGGTAC-AAAAAAGAAAACATAGCTTGCGATGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGAGAAGGTGGAAGGAGGAAACAGACATGAAGAGAGATG-GGGTGGAGGGTGAG--AGGCAGAGAGAGCATTAGGTCATAGAGCAGGGGAGTGAGCTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45771722 637 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109   0 +  64156825 C

a score=688960.000000
s hg38.chr19_GL949751v2_alt    712308 487 +   1002683 -AAACCACCTCTTCTTCTTCCAGGTCTATATGGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCCGGAGCTTGTTTGACATTTACCATCTATCCAGGGAGGCAGAGGCCGGTGAACTTAGGCTCACTGCGGTGCTGAGGGTCAATGGAACATTCCAGGCCAACTTCCCTCTGGGCCCTGTGA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGCCCTGCCCCACGCGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGAAAACACCATGCCTGTCCCATGTCTTGT---------GATCCTAGAGCCATAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGATGCCGAGACA-GAACACACAGCATGGGTGTAAGGGCGGGGTCAGGGCGCAGGATGGCAGACAGGGCACCTCCAAACCCTCC
s panTro4.chr19              59647894 487 +  63644993 -AAACTGCCTCTTCTCCTTCCAGGTCTATATGGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCGCGGAGCTTGTTTGACATTTACCATCTATCCAGGGAGGCGGAGGCCCGTGAACTTAGGCTCACTGCAGTGCTGAGGGTCAATGGAACATTCCAGGCCAACTTCCCTCTGGGCCCTGTGA------CCCACGGAGGGAGCTACAGATGCTTCGGCTCTTTCCGTGCCCTGCCCCACGTGTGGTCACACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGAAAACACCATGCCTGTCCCATGTCTTGT---------GATCCTAGAGCCATAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGATGCCGAGAGA-GAACATAGAGCATGGGTGCAAGGGTGGGGTCAGGGTGCAGGATGGCAGATAGGGCACCTCCAAACCCTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56580273 485 +  60714840 -AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCTGGCCCCACAGTCCAGGCAGGAGAGAGTGTGACCTTGTCCTGCAGCTCCCGGAGGTCCTATGACATCTACCATCTATCCAGGGAGGAGGGGGGCCATGAACTTAGGCTCCCTGCAGTGCCCAAGGTCAACGGAACATTCCAGGCAGACTTTCTTCTGGGCCCTGCCA------CCCATGGAGGGACCTACAGGTGCTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAAAGTCGAGTGACCCACTGCTTATTTCTGTCACAGGTGAGGAAAGCCCATGCCTGTCCCATGTCTTAT---------GATCCTAGAGCCTTAGCTGAGGAACTTCCTGCTGA------------------------TGATGGAAAGAAGGATGAACAGATGC--AGAGA-GAAGACGAAGCCTGGGTGTGAGGCCGGGGTCAGGGCACAGGATGGCAGACACGGCACCTCCAAACCCTCC
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55626387 485 +  59248254 -AAACTGCCTCTTCTCTTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAACGTGACCTTGTCCTGCAGCTCCCAGAGCTCGTTTGACATTTACCGTCTATCCAGGGATGGGGAGGCCCATGGACTTAGGCTCCCTGCAGTGCCGAGGGTCAGTGGAACATTCAAGGCTGACTTTCCTCTGGGCCCTGCAA------CCCACGGAGGGAACTACAGATGCTTTGGCTCTTTCCGTGCCCTGCCCTATGTGTGGTCACACCCGAGTGACCCACTGCCCATTTCTGTCACAGGTGAGGAAACCCCATGCCTGTCCCACGTCTTGT---------AATCCTAGAGCCATAGCTGAGGAACTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGATGC--AGAGA-GAAGACAAAGCCTGGGTGTGAGGGTGGGTTCAGGGCGCAGGATGGCAGACAGGGCACCTCCAAACCCTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47697741 485 +  51301725 -AAACTGCCTCTTCTCCTTCCAGGTCTATATGCGAAACCTTGTCTCTCAGCCCAGCCAGGCCCCATGGTGCAGGCAGGAGAGAACGTGACCTTGTCCTGCAGCTCCCAGAGCTCGTTTGACATTTACCATCTATCCAGGGATGGGGAGGCCCATGGACTTAGGCTCCCTGCAGTGCCGAGGGTCAGTGGAACATTCAAGGCTGACTTTCCTCTGGGCCCTGCAA------CCCACGGAGGGAACTACAGATGCTTCGGCTCTTTCCGTGCCCTGCCCTATGTGTGGTCACACCCGAGTGACCCACTGCCCATTTCtgtcacaggtgaggaaaccccATGCCTGTCCCACGTCTTGT---------AATCCTAGAGCCATAGCTGAGGAACTTCCTTTTGA------------------------TGATGGAGAGAAGCGTGGACAGATGC--AGAGA-GAAGACAAAGCCTGGGTGTGAGGGTGGGGTCAGGGCACAGGATGGCAGACAGGGCACCTCCAAACCCTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47378482 485 +  50890351 -AAACTGCCTCTTCTCCTTCCAGGTCTATATGGGAAACCTTGTCTCTCAGTCCAGCCAGGCCCCATGGTTCAGGCAGGCGAGAACGTGACCTTGTCCTGCAGCTCCCAGAGCTCGTTTGACATTTACCATCTATCCAGGGATGGGGAGGCCCATAGACTTAGGCTCCCTGCAGTGCCGAGGGTCAGTGGAACATTCCAGGCCGACTTCCCTCTGGGCCCTGCGA------CCAACGGAGGGAACTACAGATGCTTCGGTTCTTTCCGTACCGCACCCTACGAGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGGAAAGTCCATGCCTGTTCCACGTCTTGT---------AATCCTAGAGCCATAGCTGAGGAACTTCCTTTTGA------------------------TGATGGAGAGAAGCGTGAACAGATGC--AGAGA-GAAGACAAAGCCTGGGTGTGAGGGTGGGGTCATGGCACAGGATGGCAGACAGGGCACCTCCAAATCCTCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45772359 523 +  49145316 AAATCAGCCTCTTTTCCTCCCAGGAAAACACAAAAAGCCTTCTCTCTCCACCCAGGAGGACCCCAGGATGGGGAGTGGAGAGAACGTGACGTTATTCTGCATCTCTGAAATCTCATTTGACCGGTACCATCTGTGGAGAGAGGGGGCTCCTTATGGCCAGTGGCTCAGTGGAGGTCAGGGACACAGGGGAGCATTCCAGGCCAACTTTTCTGTGGGCCTCGCAACGCCAGCCCATGGAGGGACCTATAGATGCTACGGTTCTTTCAATGCCTCCCCCTATGAGTGGTCGGCCCCCAGTGAGCCCCTGCACCTTTCTGTCACAGGTGAGGAG--CCCACACCTGCCACCTGTCCTGTTGTCCACTAAGTCCCAGAGCCATACCAGAGGGGCATCCCACTGGGCACACAGGGGCATTAGGTATTCTGGACAAAATGAAGCAGTGAAAAATAC--AGACAGGGATGAACAGGCTGAGTGGGATGGGGCTGTCAGGGTGCAGGGC-ATAGACAGGGCAGCTCTGCGCCCTCC
i calJac3.chr22             I 637 I 8
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109   0 +  64156825 C

a score=47742.000000
s hg38.chr19_GL949751v2_alt    712795 47 +   1002683 TGTATGGCCTGCAAGGAGGCCCTTGATCAGGGTTCCAGGCACCCAGG
s panTro4.chr19              59648381 47 +  63644993 TGTATGGCCTGCAAGGAGGCCCTTGATCAGGGCTCCAGGCACCCAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56580758 47 +  60714840 TGCACGGCCTGCATGGAGGCCCGCGGCCAGGGCTCCAGGCACCCAGG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55626872 47 +  59248254 TTCACAGCCCACATGGAGGCCCGCGTTCAGGGCTGTCGGCACCCAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47698226 47 +  51301725 TTCACAGCCCACATGGAGGCCCGCGTTCAGGGCTGTCAGCACCCAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47378967 47 +  50890351 TTCACGGCCCACATGGAGGCCCGCGTTCAGGGCTGTCGGCACCCAGG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45772882  8 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109  0 +  64156825 C

a score=209857.000000
s hg38.chr19_GL949751v2_alt    712842 138 +   1002683 CAGATGGAGAAAGAGGTCAGAACAGACCCAGA-GGAGGG-AGACTGGGCTCTGCCTGGGGAGATCAGAGGTTCTCTCAGCCCCTCAACCTTACCCA-CTTCCCAGAAGCCCATCCTGGCCTGTCACCCACAGAGAGATGTC
s panTro4.chr19              59648428 138 +  63644993 CAGATGGAGAAAGAGGTCAGAACAGACCCAGA-GGAGGG-AGACTGGGCTCTGCCTGGGAAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-CTTCCCAGAAGCCCATCCTGGCCTGTCACCCACAGAGAGATGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56580805 138 +  60714840 CAGATGGAGAAAGCGGTCAGAATAGACCCAGA-GGAGGG-AGACTGGGCTCAGTTTGGGGAGATCAGAGGTTTCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAGCCCATCCTGGCCTCTCACCCACACAGAGATGTC
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55626919 139 +  59248254 CAGATGGAGAAAGCTGTCAGGACAGACCCAGA-GGTGGGGAGACTGGGCTCAGTTTGGGGAGATCTGAGGTTCCCTCAGCCCCTCAACCTTACTTA-TTTCCCAGAAGCCCATCCCGGCCTCTCACCCACAGAGAGATGTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47698273 139 +  51301725 CAGATGGAGAAAGCTGTCAGGACAGACCCAGA-GGTGGGGAGACTGGGCTCAGTTTGGGGAGATCTGAGGTTCCCTCAGCCCCTCAACCTTACTCA-TTTCCCAGAAGCCCATCCCGGCCTCTCACCCACAGAGAGATGTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47379014 139 +  50890351 CAGATGGAGAAAGCTGTCAGGACAGACCCAGA-GGAGGGCAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACTCA-TTTCCCAGAAGCCCATCCCGGCCTCTCACCCACAGAGAGATGTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45772890 140 +  49145316 TACATGAAGAAAGAGGTCAGGGCAAACACAGGTGGAGGTGAGGCCAGATGGAGTTTGTTGAGATCAGAGGTTGCCTCAGCCCCTCGCCCTTTTCCATTTTCTCCGAAGCCCCTCCTGACCCCTCA-CCACAGAGAGATTTC
i calJac3.chr22             I 8 T 3003
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109   0 +  64156825 C

a score=116432.000000
s hg38.chr19_GL949751v2_alt    712980 94 +   1002683 ATCACCAGCAACGCCTACACCCTTTTCTTTTTGTTTGAAGAAATAtttattgaggtgaaatatacctatgtaatttaccacctttaccattttt
s panTro4.chr19              59648566 94 +  63644993 ATCACCAGCAACCCCTATACCCTTTTCTTTTTGTTTGAAGAAATAtttattgaggtgaaatatacctataaagtttgccaccttcaccattttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56580943 94 +  60714840 ATCACCAGCAACCCCTACACCCTTTTCTTTTTGTTTGAAAAAATAtttattgaggtgaaatatacccatatagcttaccacctttaacattttt
i ponAbe2.chr19             C 0 I 13533
s macFas5.chr19              55627058 94 +  59248254 ATCACCAGCAACCCCTACACCCTTTTCTTTTCATTTGGAAAAGTAtttattgaggtgaaatatacctatataatttaccacctttaccattttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47698412 94 +  51301725 ATCACCAGCAATCCCTAcacccttttcttttcatttggaaaagtatttattgaggTGGAATATACCTATATAATTTACCtcctttaccattttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47379153 94 +  50890351 ATCACCAGCAACCCCTACACCCTTTTCTTTTCATTTGGAAAAGTAtttattgaggtgaaatatacctatataatttaccacctttaccattttt
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109  0 +  64156825 C

a score=843158.000000
s hg38.chr19_GL949751v2_alt    713074 732 +   1002683 aagtgtgaagtctactgttcataaatacatttataggctgggcacggtggctcacggttgtaatcccaacactttgagaggccaaggcaggtggatcatttgagatcaggggctcaagaccaccctggccaacatggggaaaatccatctgtactaaaaatacaaaataataat---------aataatgataataattagccgagcatggtggcacatgcctgtagtcccagctacttgggagggttgggcaggagttgcacttaattgcaggaggcggaggttgcagtgagctgagatcatgccactgcactgcagcctgggcaacagagagagacactctctcaaaaTTAATTAATTAattaattag-----------tattcttttt-------tttttaccctccacccttcccttcctggcctctggtagccaccattctactctctacctttgtgagatccaccttttagctcctgcatatgagtgagaaatggaaatacttgtaatgacctccagttccattcatgtggctgtaaatgacaggatgttactctttctatggatgagttgtccctattgtgtgtgtgtaccacattctctccatccattcacccactgatgggcgggtaggttga-tccacatcttggctactgtgaacactgctggaacagtcatgggagtgcagatgtcacttcgatacgctgatgtcctttcctttgggtttacacccagtcatggaattgctagatcct
s panTro4.chr19              59648660 732 +  63644993 aagtgtgaagtctactgttcataaatacatttataggctgggcacggtggctcacggttgtaatcgcaacactttgagaggccaaggcaggtggatcatttgagatcaggggctcaagaccaccctggccaacatagggaaaatccatctgtactaaaaatacaaaataataat---------aataatgataataattagccgagcatggtggcacatgcctgtagtcccagctacttgggagggttaggcaggagatgcacttaattgcaggaggcggaggttgcagtgagctgagatcatgccactgcactgcagcctgggcaacagagagagacactctctcaaaattaattaattaattaattag-----------tattc-tttt-------tttttaccctccacccttcccttcctggcctctggtagccaccattctactctctaccttcgtgagatccaccttttagctcctgcatatgagtgagaaatggaaatacttctaatgacctccagttccattcatgtggctgtaaatgacaggatgttactctttctatggatgagttgtccctattgtgtgtgtgtaccacattctctccatccattcatccactgatgggcaggtaggttgactccacatcttggctactgtgaacagtgctggaacagtcatgggagtgcagatatcacttcgatacactgatgttctttcctttgggtttacacccagtcatggaattgctagattct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56594570 718 +  60714840 aaaagtaaaatctagtggtcataaatacctttataTgctgggtgcagtggctcatggttttaatcttggcgctttgagaggccaaggaaggcggatcatttaagatcaggggctcaagatcagcctggccaacatgtgggaaattcatctttactaaacagacaag--------------------------aaaaattggccaggcatgctggcctgcacctgtagtcctagctacatgggaggttgaggcaggagaagcacttaagcccaggagacagaggttgcactgagccgagatcatgccactgcactgcagcctgggagacagagagagactctgtctctaaataaataaaTACATCTA---------------TATTC-TTTTGTTATTGTTGTTACGctccgcccttcccttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatacaggtgagaaatgggaatctttgcaatgacctccagttccatccatatggctgcaaatgacaggaggttgttgtttctatggatgagtagtctccactgtgtgtatgtactacattctctctatccattcacccactgacgggcaggtaagttgactccacatcttggctactgtgaacagtgccgcaacaatcacacaagtgcagatatcacttcgatatattgatttacttccctttgggtttacacccagtagtggaattgctagatcct
i ponAbe2.chr19             I 13533 I 79253
s macFas5.chr19              55627152 732 +  59248254 aagtgtgaagtctactgttcataaatacatttataggccgggcacggtggctcacggttgtaatcccaacactttgagaggccaaggcaggtggatcatttgagatcagggactcaagaccaccctggccaacgtggggaaaatccatctgtactaaaaatacaa------------------aataataataataattagccgagcatggtggcacatgcctgtagtcccaactacttgggagggttaggcaggagatgcacttagttgcaggaggcacaggttgcagtgagccgagatcatgccactgcactgcagcctgggagacagacagagacactctctcaaaaTTAATTAATTAATTAATtag--tacttttttttttt-tttt-------tttttaccctccacccttcccttcctggcctctggtagccaccattctactctctactttcatgagatccaccttttagctcctgcatatgagtaagaaatggaaatacttgtaatgacctccagttccatccatgtggctgcaaatgtcaggatgttattgtttctatggatgagtagtctccagtgtgtgtatgtactacattctctctatccattcacccactgaggggcaggtaggttgactccacatcttggctactgtgaactgtgctagaacagtcataggagtgcagctatcacttcgatacactgaagtcctttccttttggtttacacccagtcgtggaattgctagatcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47698506 733 +  51301725 aagtgtgaagTCTACTGttcataaatacatttataggctgggcacagtggctcacggttgtaatcccaacactttgagaggccaaggcaggtggatcatttgagatcagggactcaagaccaccctggccaacgtggggaaaatccatctgtactaaaaatacaa------------------aataataataataattagccgagcatggtggcacatgcctgtagtcccagctacttggaagggttAGGCAGGAGATGCACTTAGTtgcaggaggcacaggttgcagtgagccaagatcatgccactgcactgcagcctgggagacagagagagacactctctcaaaattaattaattaattaattaggttttttttgttgttt-tttt-------tttttaccctccacccttcccttcctgggctctggtagccaccattctactctctactttcaTGAGATCCACCTTTTAGCTCCTGCATATGagtaagaaatggaaataattgtaatgacctccagttccatccatgtggctgcaaatgTCAGGATGTT-TTGTTTCTATGGATGAGTAGTCTCCACTGTGTGTATGTACTACATTCTCtctatccattcacccactgagGGGCAGGTAGGTTGACTCCacatcttggctactgtgaactgTGCTAGAACAGTCATGGGAGTGCAGCTATCACTTCGATACACTGAAGTCCTTTCCTTTTGGTTTACACCCAGTCGTAGAATTGCTAGATCCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47379247 732 +  50890351 aagtgtgaagtctactgttcataaatacatttataggccgggcactgtgactcacggttgtaatcccaacactttgagaggctaaggcaggtggatcttttgagatcagggactcaagaccaccctggccaacgtggggaaaatccatctgtactaaaaatacaaaataataataataataataataataataataattagccgagcgtggtggcacatgcctgtagtctcagctacttggaagggttaggcaggagatgcacttagttgcaggaggcagaggttgcagtgagccaagatcatgccactgcactagagcctgggagacagagagagacactctctcaaaaTTAATTAATTAGT--------------------ATT-CTTT-------TTTTTAccctccacgcttcccttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgcatatgagtgagaaatggaaatacttgtaatgacctccagttccatccatgtggctgcaaatgtcaggatgttattgtctctatggatgagtagtctccactgtgtgtatgtactacattctctctatccagtcatccactgaggggcaggtaggttgtctccacatcttggctactgtgaactgtgctagaacaatcatgggagtgcagatgtcacttcaatacactgaagtcctttccttttggtttacacccagtcgtggaattgctagatcct
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109   0 +  64156825 C

a score=456867.000000
s hg38.chr19_GL949751v2_alt    713806 416 +   1002683 ctggaagtg-tctttttacattttgttttatggtttttgtttttgtttttgttttttttagaca----gtttcactcttgttgcccaggctggagtgcagtggtgccatctgggctcactgcaacctccacctccaggattcaagagattccccagcctcagc-----------------------ctcccaagtagctggg-ttactggctcccaccaccacactcggctaatttttatatttttagtagagacagagtttcgctatattggccaggctgctcttcaactcctgacctcaagtgacctacccacctcggcctcccaatgtgctgggattacaggcatgaaccactgtgcccgacctcattttattttttgaggaacttccatactcttctcctctgtaatggctgtactaatttacattcgtatcagcagtgta
s panTro4.chr19              59649392 436 +  63644993 ctggaagtg-tctttttatgttttgttttatggtttttgtttttgtttttgttttttttagaca----gtttcactcttgttgcccaggctggagtgcagtggcgccatctgggctcactgcaacctccacctccaggattcaagagattccccagcctcagcctcccaagtagctgggttactggctcccaagtagctggg-ttactggctcccaccaccacactcggctaatttttatatttttagtagagacagagtttcgctatattggccaggctgctcttcaactcctgacctcaagtgacctacccacctcggcctcccaatgtgctgggattacaggcatgaaccactgtgcccgacctcattttatcttttgaggaacttccatactcttctcc---gtaatggctgtactaatttacattcgtatcaacagtgca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56674541 408 +  60714840 ctggacgttctctttttaggttttgttttatgctttttgttttttt--------------gacatggcgtttcactcttgttgcccaagctggagtgcaatggcaccatctgagctcactgcaacctctacctccaggattcaagcgatcctccagcctcagc-----------------------ctcctgaggagttgggattactggcgcccgccaccacgcctggctgatttttgtatttttagtagagacggggtttcaccgtgttagccaggctggtctcgaactcccaacctccagtgatctgcccacttcagcctcccaaggtgctgggattacaagcgtgagccacagtgcctaacctctttttagtttttgaggaacttccatattcttttcctctgtaatggctgtattaatttacattcctatcaacagtgta
i ponAbe2.chr19             I 79253 I 1458
s macFas5.chr19              55627884 403 +  59248254 gtgcaagttgactttttacgttttgttttatggtttttgttttttttt-----------agaca--gagtttcattcttgttgcccaggctggagtgccgtggcgccatctgggctcactgcaacttgcacctccgggattcaagagattccccagcctcagc-----------------------ctcctgagtagctgagattactggctcccaccaccacactcagctaa------tatttttagtagagatggggtttctctatattggccaggctgctcttcaagtcctgacctcaagtgatctacccacctcggcctcctaatgtgctgggattacaggcatgaaccaccgtgcccaacctcattttattttttgaggaacttccatactcttctcctctgtaatggctgtactaatttacattcatatcaacagtgta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47699239 403 +  51301725 GTGCAAGTTGACtttttacgttttgttttatggtttttgttttttttt-----------agaca--gagtttcattcttgttgcccaggctggagtgccgtggtgccatctgggctcactgcaacttgcacCTCCGGGATTCAAGAGATTccctagcctcagc-----------------------ctcccaagtagctgagattactggctcccaccaccacactcagctaa------tatttttagtagagacggggtttctctatattggccaggctgctcttcaactcttgacctcaagtgatctacccacctcggcctcccaatgtgctgggattacaggcatgaaccaccgtgcccaacctcgttttattttttgaggaacttccatactctTCTCCTCtgtaatggctgtattaatttacattcataTCAACAGTGTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47379979 404 +  50890351 gggtaagttgactttttacgttttgttttatggtttttgttttttttt----------aagaca--gagtttcattcttgttgcccagcctggagtgccgtggcaccatctgggctcactgcaacttgcacctctaggattcaagagatttcccagcctcagc-----------------------ctcccgagtagctgagatttctggctcccaccaccacacttggctaa------tatttttagtagagacggggtttctctatattggccaggctgctcttcaagtcctgacctcaagtgatctacccacctcggcctcccaatgtgctgggattacaggcatgaaccaccgtgcccaacctcattttattttttgaggaacttccatactcttctcctctgtaatggttgtactaatttacatttatatcaacagtgta
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109   0 +  64156825 C

a score=5874.000000
s hg38.chr19_GL949751v2_alt    714222 7 +   1002683 CCAGATG
s panTro4.chr19              59649828 7 +  63644993 ccagATG
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55628287 7 +  59248254 CCATATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47699642 7 +  51301725 CCAGATG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47380383 7 +  50890351 CCAGATG
i chlSab2.chr6              C 0 C 0
e ponAbe2.chr19              56674949 1458 +  60714840 I
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109 0 +  64156825 C

a score=76537.000000
s hg38.chr19_GL949751v2_alt    714229 68 +   1002683 CAACCCTGGTTGACTCAG----CAGAGCAAGAGACGTGCAGTAAGAGAGAATTTAGCTTATTTATGCACACG
s panTro4.chr19              59649835 72 +  63644993 CAACCCTGGTTGACTCAGCAGACAGAGCAAGAGACGTGCAGTAAGAGAGAATTTAGCTTATTTATGCACACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56676407 68 +  60714840 CAACCCTGGTTGACTTAG----CAGAGCAAGAGCTTTGCAGTAAGAGAGAACGTAGTTCATCCACACACATG
i ponAbe2.chr19             I 1458 T 92158
s macFas5.chr19              55628294 68 +  59248254 AAACCCTGGTTGACTCAG----CAGAGCAAGAGACTTGCAGTCAGAGAGTATTTAGTTCATTTATGCACATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47699649 68 +  51301725 AAACCCTGGTTGACTCAG----CAGAGCAAGAGACTTGCAGTCAGAgagaatttagttcatttatGCACACG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47380390 68 +  50890351 AAACCCTGGTTGACACAG----CAGAGCAAGAGACTTGCAGTCAGAGAGAATTTAGTTCATTTATGCACACG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109  0 +  64156825 C

a score=25725.000000
s hg38.chr19_GL949751v2_alt    714297 20 +   1002683 ACACTTCCACTCACTCACTC
s panTro4.chr19              59649907 20 +  63644993 ACACTTCCACTCACTCACTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56584317 20 +  60714840 ACACTTCGACTCACTGACTC
i ponAbe2.chr19             T 92158 C 0
s macFas5.chr19              55628362 20 +  59248254 ACACTTCCACTCACTCACTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47699717 20 +  51301725 ACACTTCCACTCACTCACTC
i papAnu2.chr19             C 0 I 1627
s chlSab2.chr6               47380458 20 +  50890351 ACACTTCCACTCACTGACTC
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109  0 +  64156825 C

a score=84280.000000
s hg38.chr19_GL949751v2_alt    714317 69 +   1002683 GTTCAGCCAATGCCCCATGCTCTGGCTGTGCAGTGTGGAATCTtttcctattgttgccataacaaattt
s panTro4.chr19              59649927 69 +  63644993 GTTCAGCCAATGCCCCATGCTCAGGCTGTGCAGTGTGGAAtattttcctattgttgccataacaaattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56584337 69 +  60714840 ATTCAGCCACGGCCCCATGCTCAGGCTGTGCAGTGTGGAACCTtttcctattgttgccataacaaattt
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55628382 64 +  59248254 GTTCAGCCAATACCCCATGCTCTGGCT-----CTGTGGAAtattttcctattgttgccataacaaattt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47701364 69 +  51301725 GTTCAGCCAATGCCCCATGCTCTGGCTGTGCAGTGTGGAATCTTTTCCTATTGTTGCCATAACAAATTT
i papAnu2.chr19             I 1627 C 0
s chlSab2.chr6               47380478 69 +  50890351 GTTCAGCCAATACCCCATGCTCTGGCTGTGCAGTGTGGAATCTtttcctattgttgccataacaaattt
i chlSab2.chr6              C 0 I 1622
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109  0 +  64156825 C

a score=27986.000000
s hg38.chr19_GL949751v2_alt    714386 25 +   1002683 ccacaagcttcgtggatgaaaacat
s panTro4.chr19              59649996 25 +  63644993 ccacaagcttcgtggatgaaaacat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56584406 25 +  60714840 ccacaaaattcgtgggtgaaaacaa
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55628446 25 +  59248254 ccagaagcttcttggatgaaaacaT
i macFas5.chr19             C 0 I 657
s papAnu2.chr19              47701433 25 +  51301725 CCACAAGCTTTGTGGATGAAAGCAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47382169 25 +  50890351 ccacaagctttgtggatgaaagcat
i chlSab2.chr6              I 1622 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e rheMac3.chr19              60526109  0 +  64156825 C

a score=5036912.000000
s hg38.chr19_GL949751v2_alt    714411 6513 +   1002683 [encoded data, 6621 characters]
s panTro4.chr19              59650021 6523 +  63644993 [encoded data, 6621 characters]
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56584431 6529 +  60714840 [encoded data, 6621 characters]
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47701458 6505 +  51301725 [encoded data, 6621 characters]
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47382194 6515 +  50890351 [encoded data, 6621 characters]
i chlSab2.chr6              C 0 I 472
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471  657 +  59248254 I
e rheMac3.chr19              60526109    0 +  64156825 C

a score=2478.000000
s hg38.chr19_GL949751v2_alt    720924 6 +   1002683 gatgcc
s panTro4.chr19              59656544 6 +  63644993 cgtgcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56590960 6 +  60714840 cgtgcc
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47707963 6 +  51301725 cgtgcc
i papAnu2.chr19             C 0 I 398
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e chlSab2.chr6               47388709 472 +  50890351 I
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109 0 +  64156825 C

a score=414216.000000
s hg38.chr19_GL949751v2_alt    720930 523 +   1002683 tcTGGTTTAGTAGTAGAAACTCAAGCAGGAAAATTAGAATGGCTTCTTGTCACAATTACTCTGATAATGTTAATAATACCTGTTAGACATTTTGCACATTACATATGAAGAAGAGTTTGAATCTCAGATAAA---AACAAAAATACATCAAAAATCTTTAATGTAAGCACAGAATTCAATCATCTCGTGTATGAGAGGTTGGATCTGAGACGTCTTTTGAGTCTGGTCGT--------------------AGTGAAGGACGCAAGGTGTCAATTCTAGTGAGAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAACATGTAAACTGCATGGGCAGGGCGCCAAATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACAGACAGCACCATGTCGCTCATGGTCGTCAGCATGGTGTGTGTTGGTGAGTCCTGGAAGGGCATCGAGGGAGGGAGTGCGG
s panTro4.chr19              59656550 523 +  63644993 tcTGGTTTAGTACTAGAAACTCAAGCAGGAAAATTAGAATGGCTTTTTGTCACAATTACTCTGATAATGTTAATAATACCTCTTAGATATTTTGCACATTACACATGAAGAAGAGTTTGAATCTCAGATAAA---AACAAAAATTCATCAAAAGTCTTTAATGAAAGCACAGAATTCAATCATCTCGTGTGTGAGAGTTTGGATCTGAGACGTCTTTTGAGTCTGGTCAT--------------------AGTGAAGGACGCAAGGTGTCAATTCTAGTGAGAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAGCATGTAAACTGCATGGGCAGGGCGCCAAAAAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCACGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGTGCGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56590966 543 +  60714840 tcTGGTTTAGTACTAGAAACTCAAACAGGAAAATTAGAATGGCTTTTTGTCACAATTACTCTGATAATGTTAATAATACCTGTTAGATATTTTGCACATTACACATGAAGAAGAGTTTGAATCTCCGATAAA---AACACAAATACATCAAAAGTCTTTAATGTAAGCACAGAATTCAATCATCTGGTGTGTGAGAGGTTGGATCTGAGACGTCTTTTGAGTCTGATCATAGTGAACAATGCAAGGTGGCAGTGAACGATGCAAGATGGCAATTGTAGTCACAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAAAGCCTGTGTACGTCACCCTCCCATGATGTGGTCAGCATGGAAACTGCATGGGCAGGGCGCCAAATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAATCGAGAGAGGGAGTGAGG
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47708367 524 +  51301725 TCTGGGTTAGTACTAgaaattcaagaaggaaaattaGACTGACTTTTTGTCACAATTACTCTGATAATGTTAATAGTATCTGTTAGATATTTTGCACATTACACATGAAGAAGAGTTTgaatctcagataaaaacaacaaaaatacatcaAGAGTCTTTAATGTAA-CCCAGAATTCCATCATCTTGTGTTGGAAAGATTGGATCTGAGACGTGTTTTGAG-CTGGTCAT--------------------AGTGAATGAAGCAAGGTGGCAATTGTAGTCACAACAATTTCCAGGAAGCCATTTTCTGCTCTTGGCTAGAGGCCCGCTGGGCGTCATGCAAGGTACGAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAGCATGTCAACTGCACAGGCAGGGCGCCAGATAACATCCTGTGCACTGCTGAACTGAGCTGGGGCACGGCCGCCTGTCTGCACCAGCAGCACCATGTCGCTCATGGTCATCAGTGTGGCGTGTGTTGGTGAGTCCTGGAAGGGAATTCATGGAGGGAGCACTG
i papAnu2.chr19             I 398 C 0
s chlSab2.chr6               47389181 524 +  50890351 TCTGGTTTAGTACTAGAAATTCAAGAAGGAAGATTAGACTGACTTTTTGTCGCAATTACTCTGATAATGTTAATAGTATCTGTTAGATATTTTGCACATTACACATGAAGAAGAGTTTGAATCTCAGATAAAAACAACAAAAATACATCAAAAGTCTTTAATGTAA-CCCAGAATTCCATCATCTTGTGTTGGAAAGATTGGATCTGAGACGTGTTTTGAG-CTGGTCAT--------------------AGTGAATGAAGCAAGGTGGCAATTGTAGTCACAACAATTTCCAGGAAGCCATTTTCTGCTCTTGGCTGGAGGCCCGCTGGGCGTCATGCAAGGTAGGAAGAGCCTGTGTACGTCACCCTCCCATGATGTGGTCAGCACGTCAACTGCATGGGCAGGGCGCCAGATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGCCGCTCATGGTCATCAGCGTGGCGTGTGTTGGTGAGTCCTGGAAGGGAATTCACAGAGGGAGCGCTG
i chlSab2.chr6              I 472 I 79927
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=16395.000000
s hg38.chr19_GL949751v2_alt    721453 32 +   1002683 GGATGGAGATCGGGGCCCAGAGTTGGAGATAT
s panTro4.chr19              59657073 32 +  63644993 GGATGGAGATCTCGGCCTAGAGGTAAAGATCT
i panTro4.chr19             C 0 I 18152
s ponAbe2.chr19              56591509 32 +  60714840 GGATGGAGATCTCAGCCTAGAGGTAAAGATAT
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47708891 31 +  51301725 -GGTGGAGATCTGGGCCCGGAGGTGGAGATAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47469632 23 +  50890351 GGGTGGAGATCTGAGCCTGGAGG---------
i chlSab2.chr6              I 79927 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=-1115.000000
s hg38.chr19_GL949751v2_alt    721485 17 +   1002683 ----------------------------------------AGGCCTGGAAGTGGAGT
s panTro4.chr19              59675257 16 +  63644993 ----------------------------------------GGGCCTGGA-GTGGATT
i panTro4.chr19             I 18152 C 0
s ponAbe2.chr19              56591541 16 +  60714840 ----------------------------------------GGGCCTGGA-GTGGAGA
i ponAbe2.chr19             C 0 I 11336
s papAnu2.chr19              47708922 56 +  51301725 GGGCCTAGAGGTGAAGATACGGGTCTAGAGGTGGCGttatgggcctgga-gtggaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47469655  5 +  50890351 ----------------------------------------------------GGAGA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=18756.000000
s hg38.chr19_GL949751v2_alt    721502 32 +   1002683 TATGGGCCTAGAGA--------------------TGGAGTGATGGGCCTAGA
s panTro4.chr19              59675273 32 +  63644993 TATGGGCCTAGAGA--------------------TGGAGTGATGGGCCTAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56602893 32 +  60714840 TATGGGCCTAGAGG--------------------TGGAGTTATGGGCCTGGA
i ponAbe2.chr19             I 11336 C 0
s papAnu2.chr19              47708978 52 +  51301725 tctgGGCCTAGAGGTGGAGATACAGGTCTAGAGATGGAGttatgggcctgga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47469660 31 +  50890351 TCTGGACCTGGAGG--------------------TTGAGTTATGGGCCTGG-
i chlSab2.chr6              C 0 T 79986
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=24346.000000
s hg38.chr19_GL949751v2_alt    721534 60 +   1002683 AGTGGAGATCTGGGCCTGGAGTGGAGATCTGGGCCTGGAGTGGAGATATGGGCCTGGAGG
s panTro4.chr19              59675305 41 +  63644993 AGTGGATATCTG-------------------GGCCTGGAGTGGAGATAGGAATCTGGAAG
i panTro4.chr19             C 0 I 27787
s ponAbe2.chr19              56602925 57 +  60714840 AGTGGAGTTATGGGCCTGAAGTGGAGATCTGGGCCTGGAGTGGAGATATGATCCTGG---
i ponAbe2.chr19             C 0 I 2
s papAnu2.chr19              47709030 59 +  51301725 -gtggagatctgGGCCTTGAGTGGAGATAtgagcctggagtggagatatgggtCTAGAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47389705 41 +  50890351 -------------------AGTGGAGATCTGGGCCCGGAGTTGAGATATGGGCCTAGAGG
i chlSab2.chr6              T 79986 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=12339.000000
s hg38.chr19_GL949751v2_alt    721594 17 +   1002683 TTGAGATATGGGCCTGC
s panTro4.chr19              59703133 17 +  63644993 TGGAGATATGGGCCTAG
i panTro4.chr19             I 27787 C 0
s ponAbe2.chr19              56602984 17 +  60714840 TGGAGGTATGGGCCTGG
i ponAbe2.chr19             I 2 C 0
s papAnu2.chr19              47709089 17 +  51301725 TGGAGATATGGGTCTAC
i papAnu2.chr19             C 0 I 135
s chlSab2.chr6               47389746 17 +  50890351 TGGAGATATGGGCCTAG
i chlSab2.chr6              C 0 I 3
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=39904.000000
s hg38.chr19_GL949751v2_alt    721611 82 +   1002683 AGTAGAGATATGGGCTTGTA-G-TGGAGACATGGGCCTGGA-GATGGAGATATGGGCCTGGAGATGGAGATATGGGCCTGCAGTA
s panTro4.chr19              59703150 82 +  63644993 AGTGGAGATATGAGCCTGGA-GATGGAGATATGGGCCTGGA-G-TGGATATATGGGCCTGGAGGTGGTGATATGGGCATGGAGTG
i panTro4.chr19             C 0 T 27885
s ponAbe2.chr19              56603001 61 +  60714840 GGTGGAGATACAGGCCTGGA-G-CAGAGATACAAGCCTTGA-G-TGGAGATATGGGCCTGGAGTT--------------------
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47709241 80 +  51301725 AGTGGAGATAtgagcctgga-g-tggagatatgggctTGGA-A-TGAAGatatgggcctggag-tggagatatgagcctggagtg
i papAnu2.chr19             I 135 C 0
s chlSab2.chr6               47389766 80 +  50890351 --TGGAGATATGGGTCTAGAGG-TGGAGATATGGGCCTAGAGG-TGGAGATATGGGCCTGGAG-TGGAGATATGGGCCTGGAGTG
i chlSab2.chr6              I 3 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=3552.000000
s hg38.chr19_GL949751v2_alt    721693 7 +   1002683 GAGATAG
s panTro4.chr19              59675347 7 +  63644993 GAGATAG
i panTro4.chr19             T 27885 T 18249
s ponAbe2.chr19              56603062 7 +  60714840 GAGAGAG
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47709321 7 +  51301725 gagatac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47389846 7 +  50890351 GAGATCT
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109 0 +  64156825 C

a score=42672.000000
s hg38.chr19_GL949751v2_alt    721700 64 +   1002683 GGGCC------------------TGG-----------AGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTG
s panTro4.chr19              59657105 64 +  63644993 GGGCC------------------TGG-----------AGTGGAGATATGGGTCTGATGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTG
i panTro4.chr19             T 18249 C 0
s ponAbe2.chr19              56603069 64 +  60714840 GAGCC------------------TGG-----------AGTGGAGTTATGGGCCTGGAGTGGAGACATCAGCCTGGAGAGGAGATATGGGCCTG
i ponAbe2.chr19             C 0 I 7165
s papAnu2.chr19              47709328 93 +  51301725 GGGCCAGTGGAGATACGGGCCAGTGGAGATACGGGCCAGTGGAGATATGGGTCTGGCATGGAGATCTGGGCCAGGAGTGGAGATATGGGTCTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47389853 64 +  50890351 GGGCC------------------TGG-----------AGTGGAGATCTGGGCCTGGAGTGGAGATATGGGCCCGGAGTTGAGATATGGGCCTA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=6881.000000
s hg38.chr19_GL949751v2_alt    721764 29 +   1002683 GAGGTGGAGATATGGGCCTGGAGGTGGAG
s panTro4.chr19              59657169 28 +  63644993 GA-GTGGAGATCTGGGCCAGGAAGTGTTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610298 29 +  60714840 GAGGTGGAGATATAGGCCTGGAGGTGGAC
i ponAbe2.chr19             I 7165 C 0
s papAnu2.chr19              47709421 23 +  51301725 GAGGTGGAGttatgggcctggag------
i papAnu2.chr19             C 0 I 615
s chlSab2.chr6               47389917  9 +  50890351 GAGGTGGAG--------------------
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=2712.000000
s hg38.chr19_GL949751v2_alt    721793 8 +   1002683 ATATGGGC
s panTro4.chr19              59657197 8 +  63644993 ATCTGGGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610327 8 +  60714840 TGATGGGC
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               47389926 8 +  50890351 ATATGGGC
i chlSab2.chr6              C 0 I 6
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e papAnu2.chr19              47709444 615 +  51301725 I
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109 0 +  64156825 C

a score=1446.000000
s hg38.chr19_GL949751v2_alt    721801 5 +   1002683 CTGGA
s panTro4.chr19              59657205 5 +  63644993 CTGGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610335 5 +  60714840 CTGGA
i ponAbe2.chr19             C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e chlSab2.chr6               47389934 6 +  50890351 I
e papAnu2.chr19              47709444 615 +  51301725 I
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109 0 +  64156825 C

a score=6665.000000
s hg38.chr19_GL949751v2_alt    721806 13 +   1002683 GTGGAGATATGGG
s panTro4.chr19              59657210 13 +  63644993 GTGGAGATCTGGG
i panTro4.chr19             C 0 I 18270
s ponAbe2.chr19              56610340 13 +  60714840 GTGGAGATCTGGG
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               47389940 13 +  50890351 GTGGAGATATGGG
i chlSab2.chr6              I 6 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e papAnu2.chr19              47709444 615 +  51301725 I
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=8575.000000
s hg38.chr19_GL949751v2_alt    721819 27 +   1002683 TCTGGAGGTGGAGATACGGGCCTGCAG
s panTro4.chr19              59675493 26 +  63644993 CCTGGAG-TGGAGACATGGGCCTGGAG
i panTro4.chr19             I 18270 C 0
s ponAbe2.chr19              56610353 26 +  60714840 CCTGGAG-TGGTGTTACCGGCCTGCAG
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               47389953 27 +  50890351 TCTAGAGGTGGAGGTATGGGCCTGGAG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e papAnu2.chr19              47709444 615 +  51301725 I
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=33742.000000
s hg38.chr19_GL949751v2_alt    721846 44 +   1002683 TAGAGATATGGGCCTGGAGTGGAGATATGGGCCAGGAG-TGGAGT
s panTro4.chr19              59675519 45 +  63644993 TGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAGGTGGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610379 44 +  60714840 TAGAGATATGGGCCTGGAGTGCAGATATGGGCCAGGAG-TGGAGA
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47710059 44 +  51301725 TGGAGttatgggcctggagtggagatctgggcctggag-tgggGT
i papAnu2.chr19             I 615 I 465
s chlSab2.chr6               47389980 44 +  50890351 TGGAGATATGGGCCTGGAGTGGAGATCTGGGCCTGGAG-TGGAGA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=102531.000000
s hg38.chr19_GL949751v2_alt    721890 159 +   1002683 TATGGGCCTAGAGGTGGATATCTGGGCCTGGAGTGGAGATATGGGCCTAGG-AAGGAGATATGGGCCTGGGTGTGGAGATATGGGACTGGAGAGGTGATATGGGCCTGGAGTGGAGATATGGGCTTAG-GGTGGAGATCTGGGCCTGGG-GCGGAGATATGG
s panTro4.chr19              59675564 159 +  63644993 TATGGGCCTAGAGGTGGATATCTGGGCCTGGAGTGGAGATATGGGCCTAGG-ATGGAGATATGGGCCTGGGTGTGGAGATATGGGACTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCTTGG-GGTGGATATCTGGGCCTGGG-TTGGAGATAAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610423 159 +  60714840 TGTGGGTCTAGAGGTGGATATCTGGGCCTGGAGTGGAGATATGGACCTAGG-ATGGAGATATGGCTCTGGCTGGGGAGATATGGGACTGGAGTAGAGATATGGGCCTGAAGTGGAGATATGGGCTTGG-GGTGGAGATCTGGGCCTGGG-GTGGAGATATGG
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47710568 159 +  51301725 TATGGGTCTAGAGGTGGAGttatgggcctggagtggagatatgggcctggg-gtggagatatgggcct-gggatGGAAATATGGGCCTAGAGTGGAGATCTGGGCCAGGAGGGGAGATATGGGTCTAGAGgtggagttatgggcctgga-gtggagatatgg
i papAnu2.chr19             I 465 C 0
s chlSab2.chr6               47390024 144 +  50890351 TATGGGTCTAGAGGTGGAGATATGGGCCTGAAGTGGAGATATGGGCCTAGACGTGGAGATAAGGGCCTAGAGGtggagatatgggtctagag------------------gtggagatatgggcctagaggtggaggtatgggtctagaggtggaggtatgg
i chlSab2.chr6              C 0 I 91000
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=35915.000000
s hg38.chr19_GL949751v2_alt    722049 55 +   1002683 GACTGGATTGGAGATAGGGGCCTAGGGTGGAGATCTGAGCCTGGATTGG-------------------CGATAT
s panTro4.chr19              59675723 74 +  63644993 GCCTGGATTGGAGATATGGGCCTAGGGTGGAGATCTGAGCCTGGATTGGAGATACGGGCGTAGATTGGCGATAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610582 74 +  60714840 GCCTGGATTGGAGATATGGGCCTAAGGTGGAGATCTGTGCCTGGATTGGAGATCCGGGCCTGGATTGGCGATAT
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47710727 55 +  51301725 gcctggagtggagatatgggcctggagtggagatctggacctggagtgg-------------------agatat
i papAnu2.chr19             C 0 I 249
s chlSab2.chr6               47481168 55 +  50890351 GCCTGGAGTGGAGATATGGGTCTGGAGAGGAGATATGAGCCTGGAGAGG-------------------AGATAT
i chlSab2.chr6              I 91000 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=9243.000000
s hg38.chr19_GL949751v2_alt    722104 21 +   1002683 GGGCCTAGGGTGGAAATAT-------------------CA
s panTro4.chr19              59675797 40 +  63644993 GGGCTTAGGGTGGAAATATAGGCCTGGAGTGGAGATATGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56610656 40 +  60714840 GGGCCTAGGGTGGAAATATCGGCCTGGAGTGGAGATATGG
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47711031 21 +  51301725 gGGCCTGGGATGGAAATATGG-------------------
i papAnu2.chr19             I 249 C 0
s chlSab2.chr6               47481223 21 +  50890351 GGGCCTGGGGTGGAGATAGAG-------------------
i chlSab2.chr6              C 0 T 91076
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=22534.000000
s hg38.chr19_GL949751v2_alt    722125 26 +   1002683 GCCTGGAGTGGAGATATGGGCTTGGG
s panTro4.chr19              59675837 26 +  63644993 GCCTGGAGTGGAGATATGGGCTTGGG
i panTro4.chr19             C 0 T 18633
s ponAbe2.chr19              56610696 26 +  60714840 GCCTGGAGTGGAGATATGGGCTTGGG
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47711052 26 +  51301725 GCCTagagtggagatatgggcctgga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47390168 26 +  50890351 GCCTGGAGTGGAGATATAGGCCTGGA
i chlSab2.chr6              T 91076 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=644919.000000
s hg38.chr19_GL949751v2_alt    722151 862 +   1002683 GTGGGGATATGGGCCTGGAAACTGGGTCTCTGCACAGCCGACAGCCCTGTTCTTGGGTGCAGGTAGGCACTGAGGGTGAGTTTAACTTCAGCCCAGGAAGGGCCTGGCTGCCAAGACTCACAGCCCAGTGGGGGCAGCAAGGGAGGCCTGGTTTGCCTGCAGATGGATGGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGTGAGTCCTTCTCCAAACCTTCGGGTGTCATCTCCCCACATAAGAGGATTTTCCTGAAACAGGAGGGAAGTCCTGTCGGGGAGTCTCTCATAAACTAGGAAGAGAGGACCCTGGGGTGCTCAGCCCACATTTCTGACCTCGCC-TCCCTGGCCTCTCAACCCCTTGGCAGAGTCAAGTTCTGTGGGGACCAGGG---TTAGACTGGGGTGCTCAAAGCTGGGGTGTGTGGTTGGGA---------------------------------AGTGGTAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCGTTTCCATGATGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGA-AACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGTTTATTTTCGTTCAGGCATCCGCTGATAT-CCATTCACAAAGGACATGCCCTCCACCTCATGTCTACCCTGTGTTGTTTTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTTACTCAGCACTTGCTCAAAGTTCTCAGCTGAGGCTTTTGTTGTAGGGAGACACCATGTCTTTGCGGGATGGGTCCTTCCTTCAGCCCTGGGCACCAAGGTGTGATAGTAGCCAT
s panTro4.chr19              59657230 897 +  63644993 GTGTTGATCTGGGCCTGGAGCCTGGGTCTCTCCACAGCCGAGAGCCCTGTTCTTGGCAGCAGGTAGGCAGGGAGGCTAAGTTTACCTTCAGCCAATCAGGGGCCTGGCTACCAAGACTCACAGCCCAGTCGGGGCAGCAAGGGAGGCCTGGTTTGCCTGCAGGTGGATGGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACACATGGGTGAGTCCTTCTCCAAACCTTAGGTTGTCATCTCCCCACATAAGAGGATTTTCCTGAAACAGGAGGGAAGCCCGGTGGGGGATTTTCTTATAAACAAGGATGAGGAGACCCTGGGGTGCTCAGCCCACAGTTCCGACCTTGCCCTCCCCAGCCTTCCTTTCCCTGGGCTGAGTCAGGTTCTGTGGGAACCCGGGAGGGCAGACTGGGGTCCTCCAAGCTGTGCTGTGCGGCGGGGATGTGGTGTCACTGGCAGAGGAAGGGAGCAAAGCAGTGCTAGGAACAGCAGG-CCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGCGTTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACC-TAAGAGGTGGGGGAACCCCAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGTGTATTGTGGTTCACACATTGGCTGCTATTCCATTCACAAAGGACATGCCCTCGACTCCATGTCTATT-TGTGTTGTTTTACGCGAGTAATCTTGCACTATTAAAATCTAGTAAGAGTCGCTT-ATTCAGCACCTGCTCAAAGTTCTCAGCTGACACTTTTGTTGCAGGGAGATGCCATGTCTATGCGGGATGGGTCCTTCCTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCTT
i panTro4.chr19             T 18633 C 0
s ponAbe2.chr19              56610722 859 +  60714840 GTGGGGATATGGACCTGGAGGCTGGGTCTCTGCACAGCCAACAGCCGTGTTCTTCGGTGCAGGTAGGCAGTGAGGGTGAGTTTACCTTCAGCCCAGCAAGGGCCTAGTTGCCAAGACTCACAGCCCAGTGGGGGCAGCAAGGGAGGCGTGGTTTGCCTGCAGATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGTGAGTC---CTCCAAACCTCAGGGTGTCATCTCCCCACATAAGAGGATTTCCCCAAAATGGGAGGGAAGTCCTGTCGGGGATTCTCTCATAAACTAGGAAGAGGGGACCCTGGGCTGCTCGGACCGCAGTTCTGACCTCGCC-TCCCTGACCTTTCATTCCCTTGGCAGAGTCAGGTTCTGTGGGGAGCAGGG---TTAGACTGGGGTGCTCAAAGCTGGGGTGTGTGGTGGGGA---------------------------------AGTGGTAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCATTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGA-AACCACAGCCATGGCCGTGACATTCCAAATCCTCTGACGGGGGCTCCGTTGTTTATTTTTGTTCAGGCATCCACTGATATTCCATTCACAAAGGACATGCCCTCCACCCCATGTCTACCTTGTGTTGTTGTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTT-ACTCAGCACCTGCTCAAAATTCTCAGCTGACACTTTTGTTGTAGGGAGACACCATGTCTTTGTGGGATGGGTCCTTCCTTTAGCCCTGGGCACCAAGGTGTGATAACAGCCAT
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47711078 860 +  51301725 gtggagatctgggcctggaggCCGGGTCTCTGCACAGATGAGAGCCCTGTTCTTGGGGGCAGGTAGGCAGAGAGTGTGAGTTTACCTTCAGCCCAGGAAAAGCCTGGCTGCCAAGACTGACAGCCCAGTGGGGGCAGCAAGGGAGGCCTGGTTTGCCTGCAGATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGAGGGCCTGGCCACATGAGGGTGAGTCCTTCCCCAAACGTTAGGGTGTCCTCTCTCCATGTAAGAGGATTTTCCTGAAACAGGAGGGAAGTCCTGTCCAGGAGTCTCTCATCAATTAGGAAGAGGGGACGCTCGGATACTCAGCCCACAGTTCTGACCTCGCCCTCCCCAGCCTTTCTTTCCCTTGGCAGAGTCAAGTTCTGTGGGGACCAGGG---TAAGACTGGGGTGCTCAAAGCTGGGGTGTGGAGGGGGGA---------------------------------AGTGCTAGGAACAGCAGGTCCTCTGAGGACATAGGTGTGACTCACACACTTGAGTGTTTCCATGAcggtcagggctgcagtgtggCTGCTGTCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGGCCCTGACATTCCAAATCCGCTGATGGGGGCTCAgctgtttatttttgttcaggCATCGGCTGGTATTCCATTCACAAAGGACATGCCCTCCACCCCATGTCTACCTTGTGTTGTTTTATGTGAGTCATCTTGCAGTATTAAAATCTAG---GAGTCGCTT-ACACAGCACTTGCTCAAAGTTCTCAGCTAACAC-TTTGTCGCAGGGAGACACCATGTCTTTGCGGAATGGGTCCTTCCTTTAGCCCTGGGCACCCAGGTGAGGTAGGAGCCAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47390194 860 +  50890351 GTGGAGATATGGGCCTGGAGGCTGGGTCTCTGCACAGCTGAGAGCCCTGTTCTTGGGGACAGGTAGGCAGTGAGTGTGAGTTTACCTTCAGCCCAGGAAAAGCCTGGCTGCCAAGACTCACAGCCCAGTGGGGGCAGCAAGGGAGGCTTAGTTTTCCTGCAGATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGAGGGCCTGTCCACATGAGGGTGAGTCCTTACCCAAACGTTAGGGTGTCCTCTCTCCATGTAAGAAGATTTTCCTGAAACAGGAGGGAAGTCCTGTCCAGGAGTCTCTCATCAATTAGGAAGAGGGGACGCTCGGATACTCAGCCCACAGTTCTGACCTCGCCCTCCCCAGCCTTTCTTTCCCTTGGCAGAGTCAAGTTCTGTGGGGACCAGGG---TGAGACTGGGGTGCTCAAAGCTGGGGTGTGGAGGGGGGA---------------------------------AGTGCTAGGAACAGCAGGACCTCTGAGGACATAGGTGTTACTCACACACTTGAGTGTTTCCATGACGGTAGGGCCTGCAGTGTGGCTGCTGCCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGGCCCTGACATTCCAAATCTGCTGATGGGGGCTCAGCTGTTTATTTTCGTTCAGGAATCGGCTGATATTCCATTCACAAAGGACATGCCCTCCACCCCGTGTCTGCCTTGTGTTGTTTTATGTGAGTGATCTTGCAGTATTAAAATCTAA---GAGTCGCTT-ACTCAGCACTTGCTCAAAGTTCTCAGCTAACAG-TTTGTTGCAGGGAGATGCCATGTCTTTGCGGGATGGGTCCTTCCTTTAGCCCTGGGCACCCAGGTGAGGTAGGAGCCAT
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 3003 +  49145316 T
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=349274.000000
s hg38.chr19_GL949751v2_alt    723013 393 +   1002683 AGAAACGTGGAAAGCGAGGAGAATCTTCTGAGCACAGGGAGGGAAGGGCAGTTCCACATCCTCCTCTCTAAGGCGGCGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCCTTGTGGTGCCTCTAGGA---CATGTCATTCTTCGGTGTCACTCTTATCTTGGGTTTAACAACTTCAGTCTGTAAAAGGAAGGTGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCCGCACACACAGGGACATACAGATGTCGGGGTTC--ACACACACACTCCCCCAGTGGGTGGTCAGCA---CCCAGCAACCCCCTGGTGATCGTGGTCATAGGTCAGAGGGCTCCTGTC
s panTro4.chr19              59658127 393 +  63644993 AGAAA-GTGGAAAT--GGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCTTCCTGTCTAAGGCGGCGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTCCTCTCTGCCTGGCCCAGCGCTGTGGTGTCTGAAGGAGAATATGTGACTCTTCAGTGTCGCTCTCGTCTTGGGTTTAACGAATTCAGTCTGTCCAAAGAAGACGGGATGCCTGTCCCTGAGCTCTACAACAGAGTATTCCGGAACAGCCTTTTCATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGTCGGGGTTC--ACACCCACACTTCCTCACTGGGTGGTCGGCA---CCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56611581 390 +  60714840 AGAAACGTGGAAAGTGAGGAGAA---TCTGAGCACAGGGAGGGAGGGGCAGCTCCACATCCTCCTCTCTAAGGCGGCACCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCCTTCTGGTGCCTCCAGGA---CATGTGATTCTTCAGTGTCATTCTTATCTTAGGTTTAACAACTTCAGTCTGTACAAGGAAGATGGGGTGCCTGTCCCTGAGCTCTACAACAAAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCAGCACACGCAGGGACCTATAGACGTTGGTGTTC--ACACCCACACTCCCCCAGTGGGTGGTCGGCA---TCCAGCAACCCCCTGGTCATCATGGTCACAGTTCAGAGGGCTCCTGTC
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47711938 384 +  51301725 AGAAACATGGAAAGCGAGGAGAATCTTCTGAGCACACGGAGGGTGGGGCGGCTCC------GCCTCTCTAAGGCGGCGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCGGCCTGGCCCAGCCCTGTGATGTCTCCAGGA-----TGTGACTCTTTGGTGTCACTCTTATCTTGGGTTTAACAGATTCAGTCCGTACAAGGAAGACGGGGTGCCTGTCCCTGAGCCCTACAACAGAATATTCTGGAACAGCTTCCTCATGGGCACTTTGATCCCA-CACATGCAGGGACCTACAGATGTGGGGGTTC--ACACCCGCACTCCCCCAATGGGTGGTTGGCT---CCCAGCAACCCCCTGGTGATCACGGTCACAGGTCAGAGGGCTCCTGTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47391054 384 +  50890351 AGAAACGTGGAAAGCGAGGAGAATCTTCTGAGCACACGGAGGGTGGGGCGGCTCC------TCCTCTCTAAGGTGGCACCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTTGGCCTGGACCAGCCCTGTGATGTCTCCAGGA-----CGTGACTCTTTGGTGTCACTCTTATCTTGGGTTTAACAACGTCAGTCTGTACAAGGAAGATGGGGTGCCTGTTCCTGAGCCCTACAACAGAATATTCTGGAACAGCTTCCTCATGGGCACTTTGATCCCA-CACATGCAGGGACCTACAGATGTCCGGGTTC--ACACCCACAATCCCCCAAAGGGTGGTCGCCT---CCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45770027 390 +  49145316 AGAACAGTGGGAAG--AAGGAAAGCCCCCAAGGACAGTGGCGGGTGGGGGGCTCCACACTCCCCTCTCT-AGGCTGCGCCTCCTCCTCTTCCAGGTGCTCTGTACAAACTCTCCCTGTCAGCCCGGCCGAGCCCTGTGGTTCCCCAGGGAGGACGTGTGACTCTCTCCTGTGATTCTCATCTTCGGTTTGTCACATTCAAAATATACAAAACATCTGGGACCCAGGACCGTGAGCTGCAC-ACTGGCCGTTCC--AATGACTTCACCATCAACCCTGTGACCCCAGGACATGCAGGGACCTACAGATGTTCTGGATCTTTCAGCCGCACCTCAC-----AGTGGTCAGCTGTGCACAGCAACTCCCTGATGCTATTGGTCACAGGTAGGAGAAGTCCAGCC
i calJac3.chr22             T 3003 I 914
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=435411.000000
s hg38.chr19_GL949751v2_alt    723406 554 +   1002683 TTGGATTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGTTGGGCATGTCCTTGAGGGTCCCATCACGCAGGCCCTGACTGTATTTGTGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattctaatccctggagtctgtgactatttatgttataggggaagggactgaaggggaagatggagctca-------------------------tggggagacagcctggactgtcccactgggctcagtgtaatcacaagggtgcac-atgaaaggaggaggaagaggggagtggggattagagcagtccagtggaagtcttcaccagctttgaaggtggaggaaggccaagatccatgaatgcaggtggcctatagaggctggaaaagtcaaggaactgattctcca--gagtctccagagggaacaaagccctgcagatgccttgattttagcccaggaaaaatagggtccaatttctgtctccagtactggaaggtgtcagtgtggtctctcctgctgccatgcttctgataattt
s panTro4.chr19              59658520 579 +  63644993 TGGGATGCTCCTTGTCCCACCTCCTGAGTCCCAGAGCTTCTGGTGGGGGTGTCCACCAGCGTCCCATCATCCAGACCCTAACTGTATTTGGGGTAAAGGGGGATTGAATGCAGGGAAATGGCTGCtgtggtgggaagaataattgtccccagtgatgactacattctaatccctggagtctgtgactatttatgttataagggaagggacagaaggggaagatggagctcaggttgttgattagttgaccttgagatggggagatggcctggactgtcccagtgggctcagtgtaatcacaagtgtccac-atgaaaggaggaggaagaggggagtggggattagagcagcataatgggagactcagtcagctttgaaggtggaggaaggccatgagccatgaatgcaggtggcctatagaggctggaaaagtcaaggaactgattctcct--gagtctccagagggaacacagccctgcagatgccttgattttagcccaggaaaaacagggtccgatttctgtctccagaattggaaggggtcagtgtgctctctcctgctgccatgcttctgataattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56611971 579 +  60714840 TGGCATTCTCTTTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGCGTGTCCTTGAGGGTCCCATCACCCAGGCCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaacaattctccccaatgatgactacattctaatccctggagtctgtgactatttatgttataggggaagggactgaaggggaagatagagctcaggttgttgatgagttgaccttgagatggggagacagcttggaatgtcccggtgggctcagtgtaatcacaagggtctacaatgaaaggaggaggaagaggggagtggggattagagcagcgtaatgggagtctccctcagctttggaggtggaggaaggccgtgagccacgaatgcaggtggcctatagaggctggaaaagtcaaggaactgattctcct--gagtctccagagggaatgaagccctgcaggtgccttgatttcactccaggaaaaaaagggtccgatttctctctctagaattggaagGAGTCAATGTGCTCTCTTCTGCTGCCAT-CTTCTGATAATTT
i ponAbe2.chr19             C 0 T 19007
s papAnu2.chr19              47712322 578 +  51301725 TGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCGTCAGGATTTGGTCACCCAGGCCCTGACTTTATTTGGGGTAAAGGGGGATTGAATACATGGAAATGGGTGCTGTGGTGGGAAGAATAACTGTCCCCAAT-ATGGCTACATTCTAATCCCTGGAGCCTATGACTCTTTATGCTATAGGGCAGGGGACTGAAGGGGAAGACGGAGCTCTGGTTGTTGATGAGTTaaccttgagatggggagacGGCCTGGACTGTCCCGCTGGGCTCAGTGGAATCACAAGGGACCAC-ACGAGAGGAGAAGGATGAGGGGAGTGGGGATTAGAGCAGCGTCGTGGGAGACTCCATCCGCTTTGAAGGTGCAGGAAGCCCATGGGCCACCAATGCAGGTGACCTATAGAGTCTGGAAAAGTCAAGGAACTGATTCTCCC--AAGTCTCCGGAGGGAACGCAGCCCTGCAgatgccttgattttagcccaggaAAAACAGGGTCCAATTTCTGTCTCCAGAAGTGGAAGGGGTCAGTGtgttctctcctgctgccttgctTCTGATAATTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47391438 581 +  50890351 TGGGCTTCTCCTTGTCCCACCTCCCGAACCCCAGAGCTTCTGCTGGGGGTGTCCGTCAGGATTTGGTCACCCAGGCCCTGACTTTATTTGGGGTGAAGGGGGATTGAATACATGGAGATCGGTGCtgtgatgggaagaataactgtccccaatgatggctacattctaatccctggagcctgtgactatttatgctatagggcaggggactgaaggagaagacggagctctggttgttgatgagttaaccttgagatggggagatggcctgaactgtcccgctgggctcagtggaatcacaagggaccac-acgagaggagaaggaggagggcagtggggattagagcagcatagtgggagactccatctgctctgaaggtgtaggaagcccatgggccaccaatgcaggtgacctatagaggctgaaaaagtcaaggaactgattctcccctgagactccagagggaacgcagccctgcagatgccttgattttagcccaggaaaaacagggtccgatttctgtctccagaagtggaaggggtcagtgtgttctctcctgctgccttgcttctgataattt
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45770417 914 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=45110.000000
s hg38.chr19_GL949751v2_alt    723960 58 +   1002683 tctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAGTTAAGAAAC
s panTro4.chr19              59659099 58 +  63644993 tctacagcagcaacaggaaaccaacacTGGAACCCAGCTCAAGGACAAGATAAGAAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56593543 58 +  60714840 tctccagcaacaacaggaaaccaacacaggaacccaggtcaaggacaagttaaaaaac
i ponAbe2.chr19             T 19007 I 39815
s papAnu2.chr19              47712900 58 +  51301725 TCTACAGTGGCAACAGGAAACCAACACTGGAATCCAGGTCATGGATAAGTTAAGAAAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47392019 58 +  50890351 tctacagcggcaacaggaaaccaacacTGGAATCCAGGTCATGGACAAGTTAAGAAGT
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45770417 914 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=558959.000000
s hg38.chr19_GL949751v2_alt    724018 715 +   1002683 AACCCAAGGAAagccaggcatggtggcaggtgcatgtaatcctagcgactcaggaggctgagggcaggagaatcacttgaacccaggagacagaggttgcagtgagcctagaccacaccacttcactccagcctgggtgaaggagtgagactctgtctcCATAATTAATTAATTAATTAAagaaaccaaacaaggagaaggttggctaccctgagatcagcaagggtgggatgatgatgccaccaccaggctccatccacatagggaggggttgatactcctccaaccagcaccaggagccagcctatggaagctggcaccatggagAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTATTCATCAGTTCATACCTTCTGCCAAGGATTGCAATTCATCCAAAAGAGATTGAACCAGGCTGATAAGAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTTCACCCCCACATAAACAGCAGGAAATACATTAGTGTGAAATAGATACAACACCCCAAGAGATGAGGCTCAGCCCAGTGGGAAGGGAATCAGAGGCTACTagagacagagggacagagaagagggagggagacagaTGGAAGGACCTGCACCAGGAGTTAAGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACA-GACACCAG
s panTro4.chr19              59659157 701 +  63644993 GACACAAGGAtagccaggcatggtggcaggtgcatgtaatcctagcgactcgggaggctgagggcaggagaatcagttgaacccaggaggcagacgttgcagtgagcctagaccacaccacttcactccagcctgggcgaaggagtgagactctgtctctaaaaTTAATTAATTAATTAAagaaaccaaacaaggagaaggttggctaccctgagatcagcaagggtgggatgatgatgccaccaccaggctccatccacatagggaggggttgataatcctccaaccagcaccaggagccagcctatggaagctggcac--------------aggcatggcaagagtggctcccagTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATTCATCCAAAAGAGATTGAACCAGTCTGCTAAGAGCCTGGACATGCAGCCAATCCTGGTTCCTCTTCCACCCCCACATAGA-AGCAGGAAAGACATTAGTTCGAAATAGATACAACAGCCCAAGAGATGAGGCTGAGCCCAGCGGCAAGGGAATCAGAGGCTACTAGAGACAGAGGGACAGAGAAGAGGGAGGGAGACAGATGGAAGGACCTGCACCAGGAGTTATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGATAAGACACCAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56633416 713 +  60714840 gacacaaggatagctgggcatggtggcaggcccatgtaatcctagtggctccggaggctgagggcaggagaaatgcttgaacccaggagacagaggttgcagggagccaagaccacaccaattcactccagcctgggcaaaggaatgagactctgtctccaaaaTTAATTAATTAATTAAagaaaccaaacaaggggaaggttggctaccctgagatcagcaagggtgggatgatgatgccaccaccaggctccatccacagagggaggggttgatgctcctccaaccagcaccaggagccagcctatggaagctggcaccatggagAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACAGTGCTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATGCATCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGACGTGCCGCCTATCCTGGTTCGTCTTCCACCCCTACATAGACAGCAGGAAAGACATTAGTGTGAAATAGATACAACAGGCCAAGAGATGAGGCTGAGCCCAGTGGGAAGGGAATC--AGGCTACTAGAGACAGAGGGACAGAGAAGAGGGAGGAAGACGGATGGAAGGACCTGCACCAGGAGATATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACA-GACACCAG
i ponAbe2.chr19             I 39815 C 0
s papAnu2.chr19              47712958 713 +  51301725 GGCCCAAggatagccgggcgtggtcgcaGGCGCATGTAATCttagcgactcgggaggctga-ggcaggagaatcgcttaaacccaggaagcagaggttacagtaagctgagaccacaccacttcactccagcctgggcgaaggagtgagactctctctccaaaattaattaattaattaaagaagcCAAACAAGGAAAAGGTTGGCAACCCCGAGATCAGCAAGGGCGGGACGCTGATGCCACCGCCAGGTTCGATCCACAAAGAGAGGGGCTGATAGTCCTCGAACCAGCACCAGGAACCACCCTATGGAAGCTGGCACCATGGAGAAGGCACAGGCATGGCAGGAGAGGCTCCCAATCCCCACCAGGAACAGGGAGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATA-TGTCTGCCAAGGACTCCAATGTGTCTGAAAGAGATTGAACCAGCCTGCTAAGAGCCTGGACATGCAGCCTGTCCTGGTTCCTCTTCCACCCCCATGTAGACAGCCGGAAAGAGATGAGTGCGAAATAGATACAGCAGCCCAAGAGATGAGGCTGAGCCCAGTGGGAAGGGAATCAGGGGCTactagagacagagagacagagaagagggtgggagacagaaggaaggaCCTGAAACAGGAGTTAAGGGCACAGAAAAGAAcatggagacacagagaggaaggagagagaaa-gacaccAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47392077 708 +  50890351 GGCCCAAGGAtagccgggcgtggtcgcaggcacatgtaatcctagtgactcgggaggctga-ggcaggagaatcgcttaaacccaggaggcagaggttgcagtaaaccgagaccacacctcttcactccagcctgggcaaaggagt--gactctgtctccaa----aaTTAATTAATTAAagaagccaaacaaggaaaaggttttcaaccccgagatcagcaagggcaggacgctgataccatcaccaggttcgatccacatagggaggggctgatagtcctcgaaccagcaccaggaaccaccctatggaagctgtcaccatggagaaggcacagagatggcaagagcggctcccaatccccaccagaaacagggagtgtggacactggtgcctgccttactgatcagttcatacttcctgccaaggactccaatgtgtccaaaagagattgaaccgggctgctaagagcctggacatgcagcctgTCTTGGTTCCTCTTCCACCCCCACGTAGACAGCCGGAAAGAGATTAGTGCGAAATAGATACAGCAGCCCAAGAGATGAGGCTGAGCCCAGTGGGAAGGGAATCATGGGCTACTagagacagagagacagagaagagggagggagacagaTGGAAGGACCTGCACCGGGAGTTAAGGGCACAGAAAAGAACATGGAGACACAGAGAGGAAGGAGAGAGACA-GACACCAG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45770417 914 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=156572.000000
s hg38.chr19_GL949751v2_alt    724733 169 +   1002683 CAAGGGGAAGCCTCACTCATTCTAGGTGCCATGGATGGGAT-GATAAAGAGAGACACCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGA
s panTro4.chr19              59659858 169 +  63644993 CGAGGGGAAGCCTCACTCATTCTAGGTGCCATGGATGGGAT-GATAAAGAGAGACACCTTCTAAACTCACAATCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56634129 169 +  60714840 TGAGGGGAAGCCTCACTCATTCCAGTTGCCATGGATGGGAT-GATAAAGAGAGATGCCTTCTAAACTCCCAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGA
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47713671 169 +  51301725 GGAAGGAAAGCCTCACTCATTCCGGATCCTGTGGATGAGAT-GAAAAAGAGAGATGCCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCGCTGGTGAAATCAGGAGAGACAGTCATCCTGCAGTGCTGGTCAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47392785 170 +  50890351 GGAGGGGAACCCTCCCTCATTCTGGATCCTGTGGATGAGATAAAAAAAGAGAGACGCCTTCTAAACTCACAAATTCTCTTTCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAGTGCTGGTCAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45771331 165 +  49145316 CGAGGGAGAGCTTCACCC---TGAGGTCCCAGGTGAGGGGT-GAGGAAG-GAGACCCCTGTGAATTCCTCTGTCTTTGCTCCCAGGTGCATTCACAAAACCTTCCATCTCAGCCCACCCAAGCTCCCTGGTGGCTGCGGGAGTTAGGGTGACCGTGAGCTGTCACTCGGA
i calJac3.chr22             I 914 I 92
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=61280.000000
s hg38.chr19_GL949751v2_alt    724902 86 +   1002683 TGTCAGGTTTCAGCACTTCCTTCTGCACAGAGAAGGGAAGTTTAAGGACACTTTGCACCTCATTGGAGAGCACCATGATGGGGTCT
s panTro4.chr19              59660027 86 +  63644993 TGTCATGTTTGAGCACTTCCTTCTGCACAGAGAGGGGATGTTTAACGACACTTTGCGCCTCATTGGAGAGCACCATGATGGGGTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56634298 86 +  60714840 TGTGGTGTTTGAGCACTTCCTTCTGCACAGAGAGGGGGAGTTTAACGACACTTTGCGCCTCATTGGAGAGCTCCATGATGGGGTCT
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47713840 86 +  51301725 TATCAAGTTTGAGCACTTCCTTCTGCACCGAGTGGGGAAGCTTGAGGAGCCCTTGCGTCTCATCGGAGAGCTCCATGACGGGGGTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47392955 86 +  50890351 TATCAAGTTTGAGCACTTCCTTCTGCACCGAGTGGGGAAGCTTGAGGAGCCCTTGCGTCTCATCGGAGAGCTCCATGACGGGGGCT
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45771496 92 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=151120.000000
s hg38.chr19_GL949751v2_alt    724988 145 +   1002683 CCAAGGCCAACTTCTCCATCGGTCCCATGATGCAAGACCTTGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTCATCACAGGTGAGAGTGTCCGGAC
s panTro4.chr19              59660113 145 +  63644993 CCAAGGCCAACTTCCCCATCGGTCGCATGACGCAAGACCTGGCAGGGACCTACAGATGCTACGGTTCTCTTACTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTGATCACAGGTGAGAGTGTCCAGAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56634384 145 +  60714840 CCAAGGTCAACTTCTCCATCGGTCCCATGATGCCTACCCTTGCAGGGACCTACAGATGCTACGGTTCTCTTTCTCACTCCCCCTATGAGTGGTCAGCTCCCAGTGACCCTCTGGACATCATGATGACAGGTGAGAGTGTCCAGAC
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47713926 145 +  51301725 CCAAGGCCAATGTCTCCATCAGTCCAGTGACACCTGCCCTGGCAGGGACCTACCAATGCTACGGTTCTTTTACTCACTCCCCCTATGAATGGTCAGCTCCCAGTGACCCCTTGGACATCGTGATCACAGGTGAGAGTGTCAGGAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47393041 145 +  50890351 CCAAGGCCAATGTCTCCATCAGTCCAGTGACACCTGCCCTGGCAGGGACCTACCAATGCTACGGTTCTTTTACTCACTCCCCCTATGAATGGTCAGCCCCCAGTGACCCCCTGGACATCGTGATCACAGGTGAGAGTGTCCGGAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45771588 145 +  49145316 TCAAGGCTGTCTTTTGCCTGGGTCCTGTCACGCCGGCCCAGGCAGGAGCCTACAGATGCTGTGGTTCTTTCAGTCACTCCCGCTATGAGTGCTCGGCTCCCAGCGACCCCCTGGAGATTGTGATCACAGGTGAGTGTGGCTGGAC
i calJac3.chr22             I 92 I 625
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=11963.000000
s hg38.chr19_GL949751v2_alt    725133 17 +   1002683 ATTCT---CATTGTCATTGG
s panTro4.chr19              59660258 20 +  63644993 ATTCTTCTCATTTTCATTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56634529 20 +  60714840 ATTCTTCTTATTGTCATTGG
i ponAbe2.chr19             C 0 C 0
s papAnu2.chr19              47714071 20 +  51301725 ATTCTTCTCAATGTCACTGG
i papAnu2.chr19             C 0 M 1510
s chlSab2.chr6               47393186 20 +  50890351 CTTCTTCTCATTGTCACTGG
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45771733 625 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109  0 +  64156825 C

a score=210345.000000
s hg38.chr19_GL949751v2_alt    725150 423 +   1002683 GATGCAGAGTGAATGATCCACGACTTGGAACCCCCAGGTAGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGCTGAGGTTTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGGAGTTAGAAAAGACAGAAAGAGTTAAAAGAGA----CAGACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCACAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACCCATATTTATGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCACCTACAG--GCCATGTTTATTCTGACACCTCTGCC
s panTro4.chr19              59660278 424 +  63644993 GATGCAGAGTGAATGATCCAGGACTTGGAGGCCC-AGCTGGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGGAGTTAGAAAAGACAGAAGGAGTTAAAGGAGA----CAGACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCAGACACCTGGCACAGGTTAGAAGTTTCATTTGTGTTTTACCTCCACAAAGTGTTCTCTACCAGAAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCCGTGGCCTCAGGCCTTGTGGCACCTACAGATGTCGTGGTTATTCTGACACCTCTGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56634549 424 +  60714840 GATGCAGAGTGAATGATCCAGAACTTGGAGGCCC-AGGTGGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGGGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGATAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACCGAGAGCTAGAAAAGACACAAGGAGTTAAAGGAGA----CAGATAGACAGACATGTCCCAGAGAGAGGTGACCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGATTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCCAAGTTTATTCTGACACCTCTGCC
i ponAbe2.chr19             C 0 T 21269
s chlSab2.chr6               47393206 428 +  50890351 GACACAGAGTGAATGATCCTGGACTTGGAGGCCC-AGGTGGTTGTAAGGAAAATGTGCATGGGATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAGCAGGAGACACAAGCACAGACCAGGTGTCGTAACAGAGGACAGACACAGGGGCCATACAGGGAGGTAGAAAACAGAGAAAGAGTTAAAGGGGACACCCAGACAGACAGACATGTCCCAGAGAGAGGCGTCCTTCCGTGCTGACTTTGTTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTGTTACCTCCACAATGTGTTCTCTACCAGGAGAACCCAAAGACACCCACATTTCTGACCTGAGTCAGCCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCCGTGTTGATTCTGACACCTCTGCC
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45771733 625 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e papAnu2.chr19              47714091 1510 +  51301725 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=305607.000000
s hg38.chr19_GL949751v2_alt    725573 655 +   1002683 TTCCATGTAATGGAGAGTAATCGTCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGTGGTCTCCAGACTGGATTCTGTGGCTCACATTCCAAATAACCCCACATATGAAAGGATCACTGAGAGGCACAGAGAAAAATCAGGAACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGGAGTGGTGAGAATGATGGCAGGGAGCAGAGAAAAGCACTAAAATTAGAGTCCTGAGAGAGAGGCACAAGGACATAGAAACATGGAGATGTGGGGATGAATTGCAGAGATTCcaaagagaactagagagaccgagaggcagagcaagacagatgatagatg----gatagatatagatagatgataaataggtagatgatagata----ataggttaaagatacatagatgatgattgattgattc----attaatagataatacatagagatgatgatgatgaagacagata------------atacgt----acagatagagaggcagacaga------aatcatagagaga--gagatgatacatacatataaataacagatgattgatggatagatagacaagtgat----agatacatagatgatatatag
s panTro4.chr19              59660702 657 +  63644993 TTCCATGCAATGGAGAGTAATCGTCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGTGGTCTCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAGAGGATCACTGagagacacagagagaaatcagggacaccaaaaaacaaagacagaaacacacagagaaagagccagaggaaggagattgagagactcacagacacataaagagagagaa--gagggcagagaagtggagacaatgatggaagagagcagagaAAACcactaaaattagagtcctgagggcgaggcacaagggcatagaaagatggagatgtggggatgaattgcagagattccaaagagaactagagaaaccgagaggcagagcaagacagatgatagatg----gatagatatagatagatgataaataggtagatgatagata----ataggttatagatacatagatgatgattgattgattc----attaatagatgatacatagagatgatgatgatgaagacagatagata--------atacat----agagatagagaggcagacaga--gagaaatcatacagaga------tgatacatagatatagataatagatgattgatggatagatagacaattgat----agatacatagatgatatatag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56613704 667 +  60714840 TTCCATGCAATGGAGAGTAATCATCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTCCCCAGACTAGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAGAGGATCACTGAGAGACACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAAACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGAAGTGGAGAGAATGATGGAAGGGAGCAGAAAAAAGCACAAAAATTAGAGTCCTGAGGGAGAGGCACAAGGACATAGAAAGATGGAGATGTGGGGATGAATTGCAGAGATTCcaaagagaactagagagaccgagaggcagagcaagacagatgacagatg----gatagatatagatagatgataaataggtagatgatagata----ataggttatagatacaaagaagatgattgattgattcattgattaatagatgatacatagagatgatgatgatgaagatagata------------atacat----agagttagagaggcagacaaagagagaaatcatagagagagagagatgatacatagatatagataatagatgattgatggctagatagacaattgat----agataaatagatgatatatag
i ponAbe2.chr19             T 21269 C 0
s chlSab2.chr6               47393634 687 +  50890351 TTGTGTGCAGGAGAGAGTCATCATTCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTCCCCACACTGGATTCTGAGGCTCATATTCCAAATAACCCCACATATGATAGGATTGCTGAGAGACATAGAGAGAAATCAGGGACATCAAAAAGCAAAGGTGTAAACACAC--AGAATGAGCCAGTAGAAGGGGATTGAGAGACTCACAGACACATAA----AGAGAAAAGAGGGCAGAGAAGTGGAGAGAATGATGGAAGGGAGCAGAGAAAAGCTCCAAAATTAGAGTCCTGAGGGAGAGGCACAAGGACAGAGAAAGCTGGAGATGTGGGGATGAATTACAGAGATTCCAAAGAGAACTAGAGAGACCAAGAGGCAGagaaagacagatgatagatggatagatagatatagagagatgataaatagttaggtgatagataatagataggttatagatacatagatgatgattgcttgtttcattgattaatagatgatacatagagatgatgatgatcaagatagatagataaatatatgatacatcgagagagagagagaggcagacagagagagaaatcagagagaga--gagatggtacattgatacagataacaggtgatggatggatagatagacaattgatagagagataaatagatgatacatag
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45771733 625 +  49145316 I
e nomLeu3.chr10             103239075 8807 - 106955855 M
e papAnu2.chr19              47714091 1510 +  51301725 M
e macFas5.chr19              55628471 657 +  59248254 I
e rheMac3.chr19              60526109   0 +  64156825 C

a score=288629.000000
s hg38.chr19_GL949751v2_alt         726228 383 +  1002683 atatagatgacaggtagagaatttgtagataggcaccgaatagataaatagatagatcgacagataatagatagaaatatgcagaaagttatgaacaggacacaacgtgagaaacttagaattta-aaaaagtaacatcaagtcaaccaatccaaggagagtcagagagaatAAAAGAATCCAAAAAGGGAAAACA----TATCTAGAGGTGGGGAAGCGAGGTCagagacctagagagacagagaaggtggaagaaggaaatagacatgaagagagatggg-gtggagggtgagagagagagagagagagagCATTAGGTCATAGAGCAGGGG-AGTGAGTTCTCAGCTCAG--GTGAAGGGAGCTGTGACAAGGAAGATCCTCCGTAAGG
s panTro4.chr19                   59661359 372 + 63644993 atatagatgacaggtagagaatttgtagataggcactgaatagataaatatatagatcgatagataatagatagaaatatgcagaaagttatgaacaggacacaaagtgagaaactcagaattta-aaaaagtaacatcaagtcaaccaatccaaggagAGTCAGAGAGAATAAAACAATCCAAAGAGAGAAAACA----TATCTAGAGGTGGGGAAGTGAGATCAGAGACCTAGAGAGACAGAGAAGGTGGAAGGAGGAAATAGACATGAAGAGAGATGGG--TGGAGGGTGAGAGAGAGAG----------CATTAGGTCATAGAGCAGGGG-AGTGAGCTCTCAGCTCAG--GTGAAGGGAGCTGTGACAAGGAAGATCCTCCCTAGGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56614371 375 + 60714840 atatagatgacaggtagagaatttgtagagaggcaccgaatagataaatagatagatcgatagagaatagaTAGAAATATGCAGAAAGTTATGAACAGAACACAAAGTGAGAAACTCAGAATTTA-AAAAAGTAACATTAAGTCAACCAACCCAAGGAGGGTC--AGAGAATAAAACAATCCAAAAAGGGAAAACATATCTATCTAGAGTTGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGAGAAGGTGGAAGGAGGAAGTAGACATGAAGAGAGATGGG-GTGGAGGGTGAGAGAGAGAG----------CATTAGGTCATAGAGCAGGGG-AGTGAGTTCTCAGCTCAG--GTGAAGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random        0 380 -    21488 ATatagatgacaggtagagaatttgtagatagacaccaaatagataaatagatagcttgatagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTCAGAATTTA-AAAAAGTAACATCAAATCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACA----TATCTAGAGGTTGGGAAGTGAGGTCagagacctagagagacagagaaggtggaaggaggaaatagacatgaagagagatgggggtggagggtgagagagagac----agagagCATTAGGCCATAGAGCAGGGG-AGTGAGTTCTCAGCTCAG--GTGAAGGCAGCTGTGACAAGGAAGAACCTCCCTGAGG
i nomLeu3.chr10_GL398297_2_random n 0 C 0
s chlSab2.chr6                    47394321 373 + 50890351 atatagatgacagat----aatttatagatagaccctgaatagatca----atagatcagtagataacatatagaaatataCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTTAGAATTAATAAAAAGTAACATCAAGTCAACAAATCCAAGGAGAGTCAGAGAGAAGAAAACAATACAAAAAGGGAAACCA----CACCTCGGGCTGGGGAAGTGAGGTCAGAGACCTAGAGACACAGAGAAGGTGGAAGGAGGAAACAGACATGAAGGGAGACGGG-GTGGAGGATGAGAGACAGAG------AGAGCATTAGGTCATAGAGCAGGTGCAGTGAGTTCTCAGCTCAGATGTGAAGGGAGCAGTGACAAGGAAGAACCTCCCTGAGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771733 625 + 49145316 I
e papAnu2.chr19                   47714091 1510 + 51301725 M
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=98946.000000
s hg38.chr19_GL949751v2_alt         726611 92 +  1002683 --AAAATGCCTCTTCTCCT-CCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCTGGCAGGAGAGAGCGTGACCTTG
s panTro4.chr19                   59661731 93 + 63644993 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGATTCTGGCAGGAGAGAATGTGACCTTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56614746 93 + 60714840 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAAGGTGACCTTG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random      380 93 -    21488 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCATGCAGGAGAGAATGTGACCTTG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47394694 93 + 50890351 --AAACTGCCTCTTCTCCTTCCAGGTCTATATAGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCGCGCAGGAGAGAACGTGACCTTG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772358 95 + 49145316 AAAATCAGCCTCTTTTCCTCCCAGGAAAACACAAAAAGCCTTCTCTCTCCACCCAGGAGGACCCCAGGATGGGGAGTGGAGAGAACGTGACGTTA
i calJac3.chr22                   I 625 C 0
e papAnu2.chr19                   47714091 1510 + 51301725 M
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=715918.000000
s hg38.chr19_GL949751v2_alt         726703 553 +  1002683 TCCTGCAGCTCCCGGAGCTCCTATGACATGTACCATCTATCCAGGGAGGGGGAGGCCCATGAACGTAGGTTCTCTGCAGGGCCCAAGGTCAACGGAACATTCCAGGCCGACTTTCCTCTGGGCCCTG------CCACCCACGGAGGAACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCATACGAGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAACCCCATATCTGTCTCATGTCCTAT---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGATGC--AGAGAGAAGACGA--AGCTTGGGTGTGAGGGAGGGATCAGGGCACAGGATGGCAGACAGGGCACCTCCAAACCCTCCTACACGGCCTGCATGAAGGCCCGCGGCCAGGGCTCCAGGCACACAGGCAGATGGAGAAAACGGTCAGGAGAGACCCAG--AGG-A-GAGAGACTGGGCTCAGTTTGGGAAGATCAGAGGTTCCCTCAGCCCCTCAACA-TTACCCA-TTTCCCAGAAGCCCATCCTG
s panTro4.chr19                   59661824 553 + 63644993 TCCTGCAGCTCCCGGAGATCCTATGACATGTACCGTCTATCCAGGGAGGGGGAGTCTCATGAACGTAGGCTCCCTGCAGGGCCCAAGGTCAACGGAACATTCCAGGCCGACTTTCCTCTGGGCCCTG------CCACCCACGGAGGGACCTACCGATGCTTCGGCTATTTCCGTGACTCTCCGTACGAGTGGTCAAAGTCAAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAGAGCCCATGCCTGTCCCATGTCCTAT---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGGATGAACAGATGC--AGAGAGAAGACGA--AGCTTGGGTGTGAGGGAGACATCAGGGCACAGGATGGCAGACAGGGCAGCTCCAAACCCTCCTACACGGACTGCATGGAGGCCTGCGGCCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGTGGTCAGAAGAGACCCAG--AGG-A-GGGAGACTGGGCTCAGTTTGGGAAGATCAGAGGTTCCCTCAGCCCCTCAACC-TTACCCA-TTTCCCAGAAGCCCATCCTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56614839 554 + 60714840 TCCTGCAGCTCCCGGAGGTCCTATGACATCTACCATTTATCCAGAGAGCAGGGGGGCCGTGAATGTAGGCTCCCTGCAGTGTCCAAGGTCAACGGAACATTCCAGGCAGACTTTCCTCTGGGCCCTG------TCACCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCTGTGACTCTCCCTACGAGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGAAAACCCCATATCTGTCTCATGTCCTAT---------GATCCTAAAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGGAGCATGGACAGATGC--AGAGAGAACACGC--AGCTTGGGTGTGAGGGCGGGGTTAGGGCGCAGGATGGCAGACACGGCACCTCCAAACCCTCCTGCATGGCCTGCATGGAGGCCTCCGATCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGAGATACCCAG--AGACG-GGGAGACTGGGCTCAGTTTGGGAGGATCAGAGGTTCCCTCAGCCCCTCAACC-TTACCCA-TTTCCCAGAAGCCCATCCTG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random      473 556 -    21488 TCCTGCAGCTCCAGGAGCTCCTATGACGTGTACCATCTATCCAGAGAGGAGGGGGGCCATGAACGTAGGCTCTCTGCAGTGCTCAAGGTCAACGGAACATTCCAGGCAGACTTTCCTCTGGGCCCTG------CCACTCACGGAGAGGCCTACAAATGCTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGAAAACACCCTGCTTGTCCCATGTCTTGT---------GATCCTAGAGCCATAACTGAGGAGCTTCCTGCTGA------------------------TGGTGGAGAGAAGGATGGACAGATGCCGAGAGAGAAGACAA--AGCCTGGGTGTAAGGGCGGGGTCAGGGCACGGGATGGCAGACAGGACACCTCCAAACCCTCCTGTACGGCCTGCATGGATGCCTGCAGTCAGGGTTCCAGGCACCCAGGCAGATGGAGAAAGCAGTCAGGATAGACCCAG--AGA-A-GGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACTGTTACCCA-TTTCACAGAAGCCCATCCTG
i nomLeu3.chr10_GL398297_2_random C 0 I 15579
s papAnu2.chr19                   47715601 547 + 51301725 TCCTGCAGCTCCCAGAGCTCATTTGACATGTACCATCTATCCAGGGAGGGGGAGGCCCATGAACTTAGGCTCCCTGCAGTGCCCAGTGTCCATGGAATGTTCCAGGCCGACTTCCCTCTGGG-------------ACCCATGGAGGGACCTACAGATGCTTTGACTCTTTCCGTGCCCCATCCTTCGAGTGGTCAGACCTGAGTGACCCACTGCCCGTTTCTGTCACAGCTGAGGAAAGCCTATGCCTGTCCCATGTCTTAT---------GACCCTAGAGCCATAGCTGGGGAGCTTCCTGCTGG------------------------TGATGGAGAGAAGCATGGACAGATGC--AGAGAGAAGACGA--AGCCTGGGTGTGAGGGGGGAATGAGGGCACAGCATGGCAGAGAGGGCACCTCCAAACCCTCCTGCATGGCCTGCGTGGTGGTCCGCGGTCAGGGCTCCAGGCACCCaggcagatggagaaactggTCAGGACAGACCCAG--AGG-AGGGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACC-TTACCCA-TTTCCCAGaagcccaccctg
i papAnu2.chr19                   M 1510 C 0
s chlSab2.chr6                    47394787 546 + 50890351 TCCTGCAGTTCCCAGAGCTCATTTGACATGTACCATCTGTCCAGGGAGGGGGAGACCCGTGAACTTAGGCTCCTTGCAGTGCCCAGTGTCCATGGAACGTTCCAGGCCAACTTCCCTCTGGG-------------ACCCATGGAGGGACCTACAGATGCTTCAGCTCTTTCTGTGCCCCACCCTTCAAGTGGTCAGACCCGAGTGACCCACTGCCCATTTCTTTCACAGCTGAGGAAACGCCATGCCTGTCCCATGTCTTAT---------GATCCCAGAGCCATAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGGTTC--AGAGAGAAGACCA--AGCCTCAGTGTGAGGGTGGGATCAGGACGCAGGATGGCAGAGAGGGCACCTCCAAACCCTCCTGCATGGCCGGCGTGGTGGTCCACGGTCAGGGCTCGAGGCACCCAGGCAGATGGAGAAACTGGTCAGGACAGACCCAG--AGG-A-GGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACC-TTACCCA-TTTCCCAGAAGCCCTTCCTG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772453 554 + 49145316 TTCTGCATCTCTGAAATCTCATTTGACCGGTACCATCTGTGGAGAGAGGGGGCTCCTTATGGCCAGTGGCTCAGTGGAGGTCAGGGACACAGGGGAGCATTCCAGGCCAACTTTTCTGTGGGCCTCGCAACGCCAGCCCATGGAGGGACCTATAGATGCTACGGTTCTTTCAATGCCTCCCCCTATGAGTGGTCGGCCCCCAGTGAGCCCCTGCACCTTTCTGTCACAGGTGAGGAG--CCCACACCTGCCACCTGTCCTGTTGTCCACTAAGTCCCAGAGCCATACCAGAGGGGCATCCCACTGGGCACACAGGGGCATTAGGTATTCTGGACAAAATGAAGCAGTGAAAAATAC--AGACAG-GGATGAACAGGCTGAGTGGGATGGGGCTGTCAGGGTGCAGGGC-ATAGACAGGGCAGCTCTGCGCCCTCC------------------GCCC----------CTCC-----------TACATGAAGAAAGAGGTCAGGGCAAACACAGGTGGA-G-GTGAGGCCAGATGGAGTTTGTTGAGATCAGAGGTTGCCTCAGCCCCTCGCCC-TTTTCCATTTTCTCCGAAGCCCCTCCTG
i calJac3.chr22                   C 0 C 0
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=37080.000000
s hg38.chr19_GL949751v2_alt         727256 24 +  1002683 GCCTCTCACCCACACAGGGATGTC
s panTro4.chr19                   59662377 24 + 63644993 GCCTCTCACCCACACAGAGATGTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56615393 24 + 60714840 GACTCTCACCCACACAGAGATGTC
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    16608 24 -    21488 GCCTCTCACCCACACGGAGATGTC
i nomLeu3.chr10_GL398297_2_random I 15579 C 0
s papAnu2.chr19                   47716148 24 + 51301725 gcctctcacCCACAGAGAGATGTC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395333 24 + 50890351 GCCTCTCACCCACAGAGAGATGTC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45773007 23 + 49145316 ACCCCTCA-CCACAGAGAGATTTC
i calJac3.chr22                   C 0 T 1699
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=490851.000000
s hg38.chr19_GL949751v2_alt         727280 454 +  1002683 ATCACCAGCAACCCCTA-CACCCTTTAC-TTTTGTTTGAAGAAATATTTATTGAGGATAAATATACCTATATAGCTTACCACCTTTAACA--------ttttttttttttttgaggcagagtcta--gctctgtcccctatgctggagtgcagtggcacaatctcagctcactgcaacttccgcctcctgggttcaagtgattctcctgcttcagccacctgagtagctggtgctacaggcgcgcaccaccacgccaggctactttttgtatttttagtagagagggggtttcaccatgttggtcgagctggtctccaactcctgaccacgtgatccacccgcatctgcctcccaaagtgctgggattacaggcatgagccaccacgcccagccACATTTACCATTTTTAAGTGTAAAGTCTAGTGGTCATAAATACATTtatatatatatatatatatatatata
s panTro4.chr19                   59662401 448 + 63644993 ATCACCAGCAACCCCTA-CACCCTTTAC-TTTTGTTTGAAGAAATATTTATTGAGGATAAATATACCTATATAGTTTACCACCTTTAACA--------ttttttttt-----gaggcagagtcta--gctctgtcccctatgctgtagtgcagtggcacaatctcagctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagccacctgagtagctggtcctacaggcgcgcatcaccacgccaggctactttttgtattttcagtagagaggtggtttcaccatgttggtggagctggtctcaaactcctgaccacgtgatccacccacatcagcctcccaaagtgctgggattacaggcatgagacaccgcgcccggccACGTTTACCATTTTTAAGTGTAAAGTCTAGTGGTCATAAATACATTTTtatatgtatatatatatatatat-
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56615417 452 + 60714840 ATCACCAGCAACCCCTA-CACCCTTTTCTTTTTGCTTGAAAAAATAtttattgaggtgaaatatacctatatagcttaccatctttaaca--------ttttttttttttt---ggcggagtcta--gctctgtcccctatgctggagtgcagtggcacaatctcagctcactgcaacctccgcctcctgggttcaaacgattctcctacctcagccgcctgagtagctggtactataggcacgcaccaccacgccaggctactttttgtattttgagtagagagggggtttcaccatgttggtcgagctggtctcgaactcctgaccacgtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgatccaccgcgcccggccacttttaccatttttaagtgtaaattctagtggTCataaatacatttatatatatatatgtatatatatata
i ponAbe2.chr19                   C 0 T 34487
s nomLeu3.chr10_GL398297_2_random    16632 441 -    21488 ATCACCAGCAACCCTTA-CACCCTTTTCTTTTTGTTTGAAAAAATAtttattgtgattaaatatacctatatagcttaccacctttaaca--------ttttttttt-----gaggtggagtcta--gctctgtcccctacgctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagccacctgagtagctggtaccacaggtgcacaccaccatgccagcttactttct-tatttttagt--agggggggtttcaccctgttgttcaagctggtctcgaactcctgaccaggtgatccaccca------cctcccaaagtgctgggattataggcatgagccaacgcgcccggccacgtttaccatttttaagtgtaaagcctagtggtcataaatacatacatttgtttgtttgtttgtttgtttg
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47716172 450 + 51301725 ATCACTAGCAACCCCTAGGACCGTTTCCTCtttgtttgaaaaattatttattgaggtTTAATACACCTATATAGTTTaccacttttaaca---------tttttttt-----gaggcgaagtcta--gctctgtcccctatgctggagtacagtggcacaacctcggctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagccacccgagtagccggtactacaggtgtgcaccaccaggccaagctaatttttgtatttttagtagagacagggtttcatcatattggtcgggttggtctccaactcctgacctcgtgacctgcctgcctcggcctcccgaagtgctgggattataggtgtgagccaccactcccagccacctttaccatttttaagtgtaaagtcAAGTGgtcataaatacatttatatatttatgtgtgtgtgtgtgta
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395357 461 + 50890351 ATCACCAGCAACCCCTAGGGCCATTTTCTCTTTGTTTGAAAAAttatttattgaggttaaatatacctatatagtttaccacttttaacattttttttttttttttt-----gaggcggagtctcttgctctgtcccctatgctggagtacagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagcaattatcctgcctcagccacctgagtagccggtactacaggcatgcaccaccacgccaggctaatttttgtatttttagtagagacagggtttcactatattggtcgggttggtctcgaactcctgaccacgtgatccgcctgcctcagcctcccgaagtgctgggattacaggtgtaagccaccatgccaagccacctttaccatttttaagtgtaaagtctagtggtcataaatacatttataCATTTAtgtgtgtgtgtgtgta
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=-7726.000000
s hg38.chr19_GL949751v2_alt         727734 70 +  1002683 tacacacacacacacatatataaacatatatatatatatatatatatatatatatatatttttttttttt-----------------------
s panTro4.chr19                   59662849  8 + 63644993 --------------------------------------------------------------TTTTTTtt-----------------------
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56581382 44 + 60714840 --------------------------tatatatatatatatatatatatatttttttttttttttttttt-----------------------
i ponAbe2.chr19                   T 34487 I 34443
s nomLeu3.chr10_GL398297_2_random    17073 11 -    21488 ----------------------------------------------------------tttgtttgttt------------------------
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47716622 65 + 51301725 ----------------------------tacatatatgtgtatatatatgtgtgtgtatatatgtgtatatatatgtgtgtacatatatatat
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395818 42 + 50890351 ----------------------------tatatatgtgtgtatatatatgtgtgtgtgtgtatatatata-----------------------
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=128911.000000
s hg38.chr19_GL949751v2_alt         727804 109 +  1002683 tttttttttAccctccacccttttattcctggcctctggaagccaccattctactctctaccttcatgagatccaccttttagctc-tgtatatgggtgagaaatgggaa
s panTro4.chr19                   59662857 110 + 63644993 tttttttttaccctcttcccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccacattttatctcctgtatatgggtgagaaatgggaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56615869 110 + 60714840 tTTTTTTTTAccccccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggggagaaataggaa
i ponAbe2.chr19                   I 34443 C 0
s nomLeu3.chr10_GL398297_2_random    17084 110 -    21488 gtttgtttTAccctccacccttttctccctggcctctggtagccaccattctactctctcctttcatgagatccaccttttagctcttgtgtatgggtgagaaatgggaa
i nomLeu3.chr10_GL398297_2_random C 0 T 15772
s papAnu2.chr19                   47716687 109 + 51301725 atttttttaaccctcctcccttttcttcctggcctctggtagccaccattctactctctaccttcatGAGAT-CACCTTTTAGCTCCCGCCTATGGGTGAGAAATGGGAA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395860 108 + 50890351 --tTTTTTAAccttcctcccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcccgcctatgggtgagaaatggaaa
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=10290.000000
s hg38.chr19_GL949751v2_alt         727913 12 +  1002683 tctttgtaatga
s panTro4.chr19                   59662967 12 + 63644993 tctttgtaatga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56615979 12 + 60714840 tctttgtaatga
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47716796 12 + 51301725 TCTTTGTAATGa
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395968 12 + 50890351 tgtttgtaatga
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    17194 15772 -    21488 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=708769.000000
s hg38.chr19_GL949751v2_alt         727925 607 +  1002683 cttccagttccatccatgtggctgcaaatatcaggatgttattctttctatggatgagtagtctccactgtgcgtatgtactacattctctctatccattcatccactgatgggca-ggtaggttgactccacatcttggctactgtgaacagtgctgcaccaatcatacgagtgcagatatcacttcgatatattgatttactttcctttggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagttattcgtttgttg-ttttgtttttgtttttgagacagtttccctctgtgcccaggctggagtacaagtgaagtcatcttggctcattgcaacctccgcctcctgggttcaaatgattttcctgcctcagcctccctagtagctgggattacaggtgcacgccaccatgcctggctactttttgttttttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcccgcctcggtctcccaaagtgccgggattacaggcatgatccacctcacccaacctctttttagttctttaaaggacttccacacttt
s panTro4.chr19                   59662979 607 + 63644993 cctccagttccatccatgtggctgcaaatgacaggatgttattctttctgtggatgagtagtctccactgagtgtatgtaccacattctctctatccattcatccactgatgggca-ggtaggttgactccacatcttggctactgtgaagagtgctgcaccaatcatacgagtgtagatatcacatcgatatattcatttattttcctttggacatcaacccagtagtgaaattcctggatactatgaaagttctctttttagttttttgtttgttg-ttttgtttttgtttttgagacagtttccctctgtgcccaggctggagtacaagtgatgtgatcttggctcattgcaatctccgcctcctgggttcagatgattttcctgcctcagcctccgtagtagctgggatcacaggtgcatgccaccatgcctggctactttttgttttttttagtatacatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggagcccgcctcaggctcgcaaagtgctgggattacaggcatgatccactgcacccaagctatttttagttctttcaaggactcgcatacttt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56615991 594 + 60714840 cttcgagttccatccatgtggctgcgaatgacaggatgttattctttctatggatgagtagtctccactgtgcgtatgtactacagt-tctctattcgttcatccactgatgggcagggtaggttgactccacatctcggctactgtgaacagtgctgcaccgatcatacgagtgcagatatcacttcgatata-tgatttcctttcc-ttggatataaacccagtagtgaaattgctggatactatgaa------------agtttttcgtttgttgtttttgttttagtttttgagacactttctctctgtgcccaggctggagtacaagtgatgtgatcttggctcattgcaacctccgcctcctgggttcaaacgattttcctgcctcagcctccctagtagcagggattacaggtgcacgcccccatgcctggctactttttcttttttttagtatagatggggtttccccatgttggctgagctgctctcaaactcatgacctcaactgaggtgcccgcctcggtgtcacaaagtgctgggattacaggcatgatccaccgcacccaacctctttttagttatttaaaggacttccatacttt
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     1422 606 -    21488 cctccagttccatccatgtgggtgcaaatgacagggtgttattgtttctatggatgagtagtctccactgtgtg--tgtactacattctctctatccattcacccactgacgggca-ggtaggttgactccacatcttggctactgtgaacagtgctggaacagtcatacgagtgcagatatcacttcgatatattgatttcctttccttcggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagtttttcgtttgttgtttttgtttttgtttttgagacagtttccctctgtgcccaggctggagtgcaagtgatgtgatcttggcccattgcaacctccgcctcctgggttcagacgattttcctgcctcaccctccccagaagcaggcattacaggtgcaagccaccatgcttggctactttttatattttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcctgcctcggtctcgcaaagtgctgggattacaggcatgatccaccgcacccaacctctttttagttatttaaaggacttccatgcttt
i nomLeu3.chr10_GL398297_2_random T 15772 C 0
s papAnu2.chr19                   47716808 607 + 51301725 gctccagttccatccatgtggctgcaaatgTCAGGGTGTTATTGTCTCTATGGATGAGTAGTCTCCACTGTGTGTATGTACTACATTCTCtctatccattcacccactgagGGGCA-GGTAGGTTGCCTCCAcgtcttggctactgtgaacagtgctggaCCAATCATACGAGCGCAGATATtacttcaatatactgatttcctttcctttggataaaaacccagtagtgaaattgctAGATACTATGAaagttctctttttagtttttcatttgttgtttttgttttggtttttgagacagtttccctctgtgcccaggttggagttcaagTGATGTGATCttgcctcattgcaacctccaccccctgggttcgaatgattttcctgcctcagcctccctagtagctgggattacaggtgcatgccaccatgcctggctactttttgtactttttagtacagatggggtttccccatgttggccaggctgctctcaaactcatG-CCTCAAGTGAGGTGCCCACCTCagtctcgcaaagtgctgggattacaggtgggagccactgcgcccaatctatttttagttatttaaaggAGTTCCATACTTt
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395980 600 + 50890351 gctccagttccatccatgtggctgcaaatgtcaggatgttattgtctctatagatgagtagtctccactgtgtgtatgtactacattctctctatccattcacccactgaggggca-ggtaggttgtctccacatcttggctactgtgaactgtgctggaccaatcatacgagtgcagatatcacttcgatgtactgatttcctttcctttggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagtttttcgtttgttgtttttgccttggtttttgagaccgtttccctctgtgcccaggctggagttcacgtgatgcgatc--------ttgcaacctccacctcctgggttcaaacgattttcctgcctcagcctccctagtagctgagattacaggtgcatgccactatgcctggctactttttgtactttttagtacagatggggtttccccatgttggccaggctgctctcaaactcatgacctcaagcgaggtgcccgtctcgctctcccaaagtgttgggattacaggcatgagccaccatgcccagcctctttttagtttcttaaagaacttccatacttt
i chlSab2.chr6                    C 0 I 42340
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=275978.000000
s hg38.chr19_GL949751v2_alt         728532 339 +  1002683 tctccgtaaaggctgtactaatttacactcctaccaacagggtattagggttctcctttctctaccactttggcaggatttcctttgcctgtcttgcagctaaaagcc-------------attttatt---ttatttcattttatttt-------------------------gagatggagtttcgctcttgtcacccaggctggagtgcagtggtgcgatctcggctcaccacaacctccacctcccaggttcaagcgattctcctgcctcagcctccc--gagta-gctggaattacaggcacacgccaccacgcccaactaaat---tttgtatttttagtagagacagtgtttcttcatgtgggtcagactggtctcaaa
s panTro4.chr19                   59663586 363 + 63644993 tctccgtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctaccaccttgcctgcatttcttttgcctgtcttgcagctaaaagcc-------------attttatt---ttatttcattttattttattttattttatttta-tttattttgagatggagtttcgctcttctcacccaggctggagtgaaatgacgtgatctcggctcaccgcaacctgcacctcccaggttcaagcgattgtcctgcctcagcctcct--gagta-gctgggattacaggcacacgccaccacgcccggataatt---tttgtgtttttagtagagacagtgtttctccatgtgggtcaggctggtctcaaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56616585 370 + 60714840 tctccgtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctacccccttgccagcattactttggcctgtcttgcagctaaaagcc-------------attttatt---ttattttattttattttattttattttattttattttattttgagatggagtttcgctcttgtcacccaggctggagtgcagtggcacgatctcagctcaccgcaacctccacctcccaggttccagtgattctcctgcctcagcctccctgaaataggctgggattacaggcacatgcaaccacgcccggcctatttaattggtatttttggtagagacagtgtttctccatgtgggtcaggctggtctcaaa
i ponAbe2.chr19                   C 0 T 34455
s nomLeu3.chr10_GL398297_2_random     2028 380 -    21488 tctccgtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctaccaccttgccagcatttgttttccctgtcttgcagctaaaagcctttattttattttattttattttattattttattttattttattttattttattttattttattttgagatggagttttgctcttgtcacccaggctggagtgcagtggcgcgatctcagctcaccgcaacctccatctcccaggttcaagtgattctcctgccttagcctccc--aagta-gctggaattacaggcacaggccaccacgcgcggctaatt---tttgtatttttagtagagacagtgtttctccatgtgggtcaggctggtctcaaa
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47717415 363 + 51301725 tctccataatggctgtactaatttacactcctaccaacagggTACCAGGGTTCTCCTTTCTCTACcaccttgccagcatttgttttgCCTGTCTTGCAGCtaaaagcc-------------attttatt---ttattttattttattttattttattttattttattttattttgagatggagttgtgctcttgtcacccaggctggagtgcagtggcgcgatctcagctcaccgcaacctccacctcccgggttcaa-tgattctcctgcctcagcctccc--aaata-gctggaattacaggaatgtgccaccacgcccagcttatt---tttgcatttttagtagaaacagtgtttctcCACGTGggtcaggcgggtctcaaa
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=141474.000000
s hg38.chr19_GL949751v2_alt         728871 179 +  1002683 ctcccgaccttatgaggttcacccacctcaggctctcaaaggtctaggatgacagacgtgagccaccacgcccggcctaaaatccattttaatggggtgagatgaaaactcactttgattttaatttgtgtttctctgatgatgagtgaaactgagcactttttagtatgtggggaaat
s panTro4.chr19                   59663949 179 + 63644993 ctcccgacctcaggagattcgcccacctcgggctctcaaagttctaggatgacagatgtgagccaccacacctggcctaaaagccattttaatgggatgagatgaaaactcactttgattttaatttgcatttctctgatgatgagtgatagtgaccactttttcatatgcggggaaat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56582500 178 + 60714840 -ctctgaccttaggagattcgcccacctcgggctctcaaagttctaggatgatagaggtgagccaccacgcccggcctaaaagccatcttaatggggtgagatgaaaactcacttcgattttcatttgcatttctctaatgatgaatgatactgagcattttttcatatgtggggaaat
i ponAbe2.chr19                   T 34455 C 0
s nomLeu3.chr10_GL398297_2_random     2408 178 -    21488 ctcccgacctcaggagatttgcccacctc-ggctctcaaagatctaggatgacagatgtgagccaccacgcccggcctaaaagccattttaatggggtgagatgaaaactcactttgattttaatttgcatttctctgatgatgagtgatactgagcactttttcatatgcagggaaat
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47717778 179 + 51301725 ctcccgacctcaggtgattcacccacctcaggctctcaaagtgctaggatgatagacgtgagccaccacccccagcctaaaagccattttaatgggGTGAGATGACAACTCactttgattttaatttgcatttttctaatgataagtgatactgagcactttttcatatgcggGGAAAT
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=89098.000000
s hg38.chr19_GL949751v2_alt         729050 78 +  1002683 ttcatgtgttttgctcctttttcaattaaatcgtttgttttattgagttgtttgagcttcttatatttctagttatta
s panTro4.chr19                   59664128 78 + 63644993 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagtcatta
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56582678 75 + 60714840 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgag---cttatatttctagtcatta
i ponAbe2.chr19                   C 0 I 34829
s nomLeu3.chr10_GL398297_2_random     2586 78 -    21488 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttctttgagcttcttatatttctagttatta
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47717957 77 + 51301725 TTCAGGTCTTCTGCTC-CTTTTTAATTAAATCATTTGTTTTATTGAGTTGTTTAAGCTTCTTATATTTCTAGTTATTA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47438920 78 + 50890351 ttcatgtcttttgctcattttttagttaaattctttgttttattgagttatgtgagcttcttatatttctagttataa
i chlSab2.chr6                    I 42340 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=315606.000000
s hg38.chr19_GL949751v2_alt         729128 270 +  1002683 atcccatctcagatgcatagtttgcacatatttgctcccaatctgtgggttgtctcttcactttgttggttt-atttttagcggtgcagaagttgcttagtttgaggtaatcccaatggtctattttt-gcttcgattacttgtgttttgaaggtttaaaacaaaatgtcttccttcagacaaatgtcctggagcatttccccaatattttcttctacgtgtttcataggttcaggccttagactcacatctttaatccattttcatttga-g
s panTro4.chr19                   59664206 271 + 63644993 atcccatctcagatgcatagtttgcacattgttgctcccagtctgtgggttgtctcttcactttgttggttt-atctttagtggtgcagaagttgcttagtttgatgtaatcccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaaatgtctttcttcagacaaatgtcgtggagcatttccccaatattttcttctacgtgtttcataggttcaggccttagactcacatctttaatccattttcattcga-t
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56617582 271 + 60714840 atcccgtctcagatgcatagtttgcacatatttactcccaatgtgtgcgttgtttcttcacgttgttggttt-atctttagtggcacagaagttgcttagtttgatgtaatcccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaagtgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacgtgtttcataggttcagcccttagactcacatctttaatccattttcatttga-t
i ponAbe2.chr19                   I 34829 C 0
s nomLeu3.chr10_GL398297_2_random     2664 272 -    21488 atcttgtctcagatgcatagtttgcatgtatttgctcccaatctgtgggttgtctcttcactttgttggttt-atctttagcagtgcagaagttgcttagtttgatgtaaccccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaaatgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacatgtctcataggttcaggccttagactcacatctttaatccattttcatttgatt
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47718034 270 + 51301725 ATCCTgtctcagatgcatagtttgcacatatttgctcccaatctgtgggttgtctcttcactttgttggtta-ATGTTTAGTGGTGCAGAAGCTgcttagtttgatgtaatcccaatggtctattttttgctttgattacttgtgtttttaaggttttaaacAAAATGTCTTTCCTCGGACAAATGTCCTGGAGCATTTCCCCAAGACTTTCTTCTACGTGTTTCATAGGTTCA-GCCTTAAACTCgcatctttaatccattttcatttga-t
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47438998 272 + 50890351 atcccgtctcagatgcatagtttgcaattattggctcccattctgtgggttgtctcttcactttgttggttatttgttttgcagtgcagaagctgcttagtttgatataatccctgtggtctgttttttgctttgattacttgtgtttttgaagtattaaacaaaatgtcttttctcagacaaatgtcctgaagcatttccctaatatttccttctacaaatttcataggttcaggacttagactcatgtatttaatccatttggatttga-c
i chlSab2.chr6                    C 0 T 42370
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=382008.000000
s hg38.chr19_GL949751v2_alt         729398 299 +  1002683 ttttgtgtatagtgacaggtagaggtgcagtttcattcctctgcatgtagatgtccaggtttccctgcactgtttattgaaaagactgtcctttcctgattgtgagttcttggcacctttgtcaaagtccattggatgggctgggcatggtggctgacacctgcaatttcagcactttgggagcccaaggcgggtggatcacctgaggccaggagttcaagattagtctggccgacgtgatgaaacattgtctccactaaaaatataaaaattagctgagcatggtggtcagcacctgt
s panTro4.chr19                   59664477 299 + 63644993 ttttgtgtttggtgacaggtagaggtgcagtttcattcttctgcatgtagatatccagttttccctgcactgtttattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccattggatgggctgggcattgtggcccacacctgcaattccagcactttgggaggccgaggcaggtggatcacctgaggccaggagttcaagatcagcctgaccaacatggtgaaacattgtctgtactaaaaatacaaaaattagctgagcatggtggtcagcacctgt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56617853 299 + 60714840 ttttgtgtatggtgacaggtagaggtgcagtttcattcttctgcatgtagatgtccaggtttccctgcactgttgattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccagtggatgggctgggcatggtggctaacacctgcaattgcagcattttgggagaccgaggcaggtggatcacttgaggccaggagttcaagatcagcctggccaacatggtgaaacgttgtctctactaaaaatacaaaagttagctgagcatggtggtcagcacctgt
i ponAbe2.chr19                   C 0 I 4516
s nomLeu3.chr10_GL398297_2_random     2936 299 -    21488 ttttgtgtatggtgacaggtagaggtgcagtttcattcctatgcatgtagatatccagttttccccgcactgtttattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccattggatgggctgggcatggtggctaacacctgcaattccagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacaccgtctctactaaaaatacaaaaattagctgagcatggtggtcagcacctgt
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47718304 299 + 51301725 ttttgtgtatggtgagaggtagaggtgcagtttcattcctctgcatgtagatatccagttttccctgcaCGGTTTACTAAAAAGTCTGTCCTTTCCTGATTGTaagttcttggcacctttgtcaaagtCCATcggatgggctgggcatggtggttcacacctgcaattccagcactttgggaggccgaggcaggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacatcgtctgtactaagaatacaaaaattagctgagcatggtggtcaGCGCCTGT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47396900 299 + 50890351 ttttgtgtatggtgagaggtagaggtgcagtttcattcctctgcatgtagatatccagttttccctgcacagtttattaaaaagtctgtcctttcctgattgtaagttcttggcacctttgtcaaagtccatcagatggactgggcatggtggttcacacctgcaattccagcactttgggaggctgaggcaggtggatcacctgaggcctggagttcaagatcagcctggccatcatggtgaaacatcgtctgtactaaaaatacaaaaattagctgagcatggtggtcggcgcctgt
i chlSab2.chr6                    T 42370 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=172972.000000
s hg38.chr19_GL949751v2_alt         729697 139 +  1002683 aataccactactcaggagtttgaggccagagaattgattgaacccaggaggctgtggtggcagtgaaccgagattgcacctctgcactccagcctgggtgacagagcgagactccatctcaaaagaaaaaagaaaaaaa
s panTro4.chr19                   59664776 139 + 63644993 aataccactactcaggagtttgaggtgagagaattgattgaacccaggaggctgaggttgcagtgaaccaagattgcacctctgcactccagcctgggtgacagaacaggaatccatctcaagagaaaaaataaaaaaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56622668 139 + 60714840 aataccactactcaagggtttgaggtgagagaattgattgaacccaggaggctgaggttgcagtgaaccgagattgcacctctgcactccagcctgggtgacagagtgagactccatctgaaaagaaaaaataaaaaaC
i ponAbe2.chr19                   I 4516 C 0
s nomLeu3.chr10_GL398297_2_random     3235 139 -    21488 aataccactactcgggagtttgaggcgagagaattgattgaacccaggaggctgagtttacagtgaaccgagattgcacctctgcactccagcctgggtgacagagcgagactctatctcaaaagaaaaaataaaaaac
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47718603 139 + 51301725 AATACCactactcaggagtttgaggcaaaagaattgattgaacctaggaggctgaggttgcagtgaaccgagattgcacctctgcactccagcctgggtgacagagcgagattccatctcaaaagaggaaaaaaaaaaa
i papAnu2.chr19                   C 0 I 2
s chlSab2.chr6                    47397199 139 + 50890351 aataccactactcaggagtttgaggcaaaagaattgattgaacccaggaggctgaggttgcagtgaactgagattgcacctctgtactccagcccgggtgacagagcgagattctatctcaaaagagaaaaaaaaaaaa
i chlSab2.chr6                    C 0 I 4
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55628471 657 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=3243602.000000
s hg38.chr19_GL949751v2_alt         729836 1980 +  1002683 cattggaggtaaatgcatggattatatctgtgttcttcattctgctccattgttctacgtgcctttctttatgccaatgtgatgctgttttgcttactacagctctgtaacatattttgagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGCGTCACATACAAAAATTACGGAAAAAAGGATCCCAGGACTCCCAGGGCCCAATATTAGATAACAGAGTG-TTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAGGACAGACACCCTCATTTCCTCACCTCTCTCCTGTCTCGTGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACTGAACCAAGCTCCGAAACCGGTGAGTACAGAA-CCCTCTTATATCCGCTTTTGGAAACCTGGGGAGGTAGAAACCTTCGATGCAGGCATTGACTCAGCATCTCGCAGCTCTGACATTGTACGCCTGTCTTCTACCATCTCCGAACTCCAGATACTCCAACAGCGAAAGGGATCTGGGCCCAACCTAGGGCTCAGTGAAATCTCTTAATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAG---------G-AAAAATGCAATGTTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAGAGAGGGAAGGGAAGGGAACATCTGATGAGGGCGAGG-TGTTTTAGAGAAGTTCCACTTGCCAAGGAATGAATTACTGTTGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGCAACAGCCTTGCCGTAACAGAGAACGGAGCTCATGCACGCACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGGCTGTGCAGTGCGGAACCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaacggttttttaattatcttacagtgctgtagctca-aagtaggaagtgcatcttactgggctaaaatcaaggtg-acagcaaggctgccttccctctgaggattccaggcaagaatctgcttctcacttatcccagcttctaaaggctccca-gttccttggctcctgttccccttcctccttcctcaaagcccacaaagactggtcacatctcacatggcatcactcagtgccttcttccttaccacacctctttctctgaatgctgctctcccttcttccttatcttttgaaaacttggggattctattgggttcaccaagatgaaaatccctcataatctcctggaaatcatccaggatacccttgttttaagttcagctgattagcaaccgcaattccatctacaatcttcattcctcctttccatgtaaaataacatattcacaagctatggaggctaggacagggacattttggggtgggacagcattctcctgccttccacaAACGGTGAACAAGATGCATTTGGCTTCTGCCCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGGCAGAAAATGAATGCACAAGTGGATCTATAAATGAATGATCCATTGGGAAGCATCTGTGCATGAAATCTAttt-----tttgtttg---ttcttttgtttattgagacagagtcgccctctgtcttccaggctacagtgcagtgtcacgatcttggctcactgcaacctgcgtctcctggattcaagtgattctcctgcctccgcctctcgagtagctgggattacaggcaactgccaccgtgcccggct-aattctttttgtatatttttt-gtagagaggatgtttcaccacgttggccaagcttgtctgaaactcccaacctcaagtgatccgaccgtctcagcatgccaaagtaatgggactacaggcgtgagccactgtgcccagccAGAATTCAAAATCAATAATAGATAATGCTGAGTGTATGATTTCAGGTGACAAAG
s panTro4.chr19                   59664915 1979 + 63644993 cattggatgtaaatgcatggattatatctgtgttcttcattctgctccgttgttctatgtgcctttccttatgccaacatcatgctgttttgcttactacagctctgtaacatattttgagatcaggtagtgtgatgctcctgtttactctttATACCTTGAAGTCTCAAGACAGTGGGCGTCACATATAAAAATTATGGAAAAAAGGATCCCTGGACTCCCAGGGCACAATATCAGATTACAGAGTG-TTGGCCATGAACCAACCTCAAAAATTTCCATTGAATAGAGGACAGACACTCACATTTCCTCACCTGTCTCCTGTCTCATGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACTGAATCAAGCTCCAAAACCAGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGAAACCTGGGGAGGTGGAAACCTTGGATTCAGGCATTGAGTCAGCATCTCACAGCTCTGACATTGGGCGCCTGTCTTCCACCATCTCCGAACTCCAGATACTTCAACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTCATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATCGCCAATCTGACATCTTTCTCAG---------G-AAAAATGCAATGTTTCTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAGAGAGGGAAGGGAAGGGAACATCCGATGAGGGCGAGG-TGTTTTAGAGAAGTTCCACTTGCCAAGGAATGAATTACTGTTGGTCACGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACAGAGAACAGAGCTCACGCATGCACACTTTGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGGCTGTGCAGTGTGGAACCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaacggttatttaattatcttacagtgctctagctca-aagtacgaagtgcatgtcactgggctaaaatcaaggtg-acagcaaggctgccttccctctgagggttccaggcaagaatctgcttctcacttgtcccagcttctaaaggctccca-gttccttggctcctggtccccttcctccttcctcaaagcccacaaaggctggtcacatctcacatggcatcactcagacacttcctccttaccacacctctttctctgaatgctgctctcccttcttccttatcttttgaaaacttggggattctattgggttcaccaagatgaaaatccatcataatctcccggaaatcatccaggatactcttgttttaagttcagctgattagcaaccgtaattccatctgcaatcttcattcctccttccc-tgtaaaataacatattcacaagctatggaggctaggacagggacattttggggtgggacagcattctcctgccttccacaAACAGTGAACAAGACGCATTTGGCCTCTGCTCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGGCAGAAAATGAATGCACAAGTGGACCAATAAGTGAATGATCCACTGGGAAGCATCTGTGCATGAAATCTAttt-----tttgtttg---ttcgtttgtttattgagacagagtctccctctgtcttccaggctacagtgcagtgtcacaatcttggctcactgcaacctgtgtctcctggattcaagtgattctcctgcctcagcctctcgagtagctgggattataggcaactgccaccatgcccggct-aattctttttgtatatttttt-gtagagaggatgtttcaccatgttggccaagcttgtctgaaactcccaacctcaagtgatccaaccacctcagcatcccaaagtactgggattacaggcgtcagccactgcgcccagccAGAATTCAAAATCAATAATAGATAATGCTgagtgtatgattttgggtgacagag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56622807 1979 + 60714840 CAttggatgttaatgcatggattatatctgttttcttcattctgctccattgttctatgtgcctttctttatgccaacgtcgtgctgttttgcttactacagctctagaatgtatttttagatcaggtagtgtgatgctcctgttttctctttataccttgaagtctcaagaCAGTGGGTGTCACATATAAAAATTATGGGAAAAAGGATCCCAGGACTCCCAGAGCCCAATATCAGATAACAGAGTG-TTGGCCATGAACCTACCTCAAAGATTTCCATTGAGTAGAGGACAGACACCCTCATTTCCTCACCTCTCTCCTGTCTTGTGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACGGAACCAAGCTCCAAAATCGGTGAGTACAGAA-CCCTCTTATATCTGCCTTTGGAAACCTGGGGAGGTGGAAACCTTGGATTCAGGCATTGACTCAGCATCTCACAGCTCTGACATTGTGCACCTGTCTTCCACCATCTCCAAACTCCAGATACTCCAACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTAATCTCTCATTTTATGGAACTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAG---------ACAAAAATGCAATATTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAGAGAGGGAAGGGAAGGGAACATCTGATGAGGGCGAGG-TGTTTTAGAGAAGTGCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAAGCAACCCTGGCTGACTCCGAAGAGAAAGAGCCTTGCCGTAACAGAGAACAGAGCTCATGCACGCACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGGCTGTGCAGTGTGGAACCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaatggttttttaattatctaaaagtgctgtagctca-aagtatgaagtgcatctcactgggctaaaatcaaggtg-acagcaaggcggccttccctctgaaggttccaggcaagaatctgcatctcacttgtcccagcttctaaaggctcccatgttccttggctcccggtccccttcctccttcctcaaaacccacaaagactggtcacatctcacatggcatcactcagacccttcttccttaccacacctctttctctgaatgctgcttacccttcttcctcatcttttgaaaacttggggattctatcgggttcaccaagatgaaaatccaccataatctcccggaaatcatccaggataccctggttttaacttcagctgattagcaaccataattccatctgcaatcttcattcctactttccatgtaaaataacatattcacaagctatggaggctaggacaggaacattttggggtgggacagcattctcctgccttccacaAACAGTGAACAAGATGCATTTGGCCTCTGCTCTTGGGACACTGATATTGCAGATGGTGAAATGGGAGGGCAGAAAATGAACGCACAAGTGGACCAATAAATGAATGATCCATTTGGAAGCGTCTGTGCATGAAATCTA--------tttgtttg---tttctttgtttattgagacagagtctccctctgtcttccaggctacagtgcagtgtcacgatctgggctcactgcaacctgcacctcctggattcaagtgattctcctgcctcagcctctcgagtagctgggattacaggcaactgccaccacgcccggct-aattcttattgtatatttttt-gtagagaggatgtttcaccatgttgcccaagcttgtctgaaactcccaacctcaagttatccaaccgtctcagcaacccaaagtactgggattacaggcgtgagccactgtgcccagccAGAATTCAAAATCAATAATAGATAATGCTGAGTGTATAATTTTGGGTGACAGAG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     3374 1987 -    21488 cattagatgtaaatgcgtggattatatctgtgttattcattctgctccattgttctatgtgcctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacatatttttagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGCATCACATATAAAAACTATGGAAAAAAGGATCCCAGGACTCCCCAGGCCCAATATTAGATAACAGAGTG-TTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAGGACAGACACTCTCATTTCCTCACCTCTCTCCTGTCTCGTGTTCTAGGAAACCCTTCAAACAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGAAACCTGGGGAGGTGGAAGCCTTGGATGCAGGCGTTGACTCAGCATCCCACAGCTCTGACATCGTGTGCCTGTCTTCAACCATCTCTGAACTCCAGATACTCCAACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTAATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAG---------GAAAAAATGCAGTGTTTGTTCTGCCTTCATTCCAAACTGGAGGATAAATTCCTGAGGGCTTGAGAGAGGGAAGAGAAGGGAACATCTGACGAGGGAGAGG-TGTTTTAGAGAAGTTCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACACAGAACAGAGCTCATGCACGTACACTTCGACTCACTGACTCATTCGGCCGCGGCCCCATGTTCAGGCTGTGCAGTGTGGAACCTtttcctattgttgccataacaaatttccacaagattcatgggtgaaaacaaaacagttatttaattatcttacagtggggtagctca-aagtatgaagtgcatctcactgggctaaaatcaaggtg-acagcaaggctgccttcccactgagggttccaggcgagaatctgcttctcacttgtcccagcttctaaaggctcccatgttccttggctcctggtcccattcctccttcctcaaaacccacaaagactggtcacatctcacatggcatcactcagacccttcttccttaccacacctctttctcggaatgctgctctcccttcctcctcatcttttgaaaacttggggattctattgggttcaccaagatgaaaatccaccacaatctcccggaaatcatccaggatacccttgttttaagttcagctgattagcaaccgtaattccatctgcaatcttcattcctcctttccatgtaaaataacatattcacaagctatggaggttaggacagggacattttggggtgggacagccttctcctgccttccgcaAACAGTGAACAAGATGCATTTGGCCTCTGCTCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGGCAGAAAATGAATGCACAAGTGGGCCAATAAATGAATGATCCATTGGGAAGCATCTGTGCACGAAATCTAtttgtttgtttgtttg---tttgtttgtttAttgagacagagtctccctctgtcttccaggctacagtgcagtgtcacgatcttggctcactgcaacctgcacctcctggattcaagtgattctcctgcctcaccctcttgagtagctgggattacaggcaactgccaccacgcccggct-aattctttttgtacatttttt-gtagagaggatgtttcaccatgttggccaagcttgtctgaaactcccaacctcaaatgatccaaccatctcagcatcccaaagtactgggattacaggcgtgagccactgtgcccagccAGAATTCAAAATAAATAATAGATAATGCTGAGTGTATAATTTTGGGTGACAGAG
i nomLeu3.chr10_GL398297_2_random C 0 I 15601
s macFas5.chr19                   55629128 1968 + 59248254 cattggatgtaaatgggtggattacgtctgtgttcttcattttgctccattgttctatgggtctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacgtatttttaagtcaggtagtgtgatgctcctgttttctcctCATACCTTGAAGTCTCAAGACAGTGAGCATCACATACAATGATTATGGAGAAGGGTACACCAGGACTTCCAGGGCCCAACATTAGATAACAGAATGTTTGGGCATGAACCAACCTTAAAGGTTTCCATTGAGTAGAAGACAGGCATCTTCATTTCCACACCTCTCTCCTGTCCTGTGTTCTAGGAAACTCTTCAAGTACTTGGTCTTCACCCACAGAACCAAGCTCCAACACTGGTGAGTAAAGAACCCCTCTTGTCTCTGCTTTTGGAAACCTGGAGAGGTGGAAGCCTTGGATTCAAGCGTTAGCTCAGCTCCT------TCTGGGATTATGGGCCTGTCTTCTGCTGTCTCTGAACTCTAGACACTCCAACAGCACAAGGGATCTGGGGCCAACACAA---TCAGTGAAGTCTCTTAATCTCTAATTTTCTGCACCTGAGACCTC---CAAGCTAGAAGGATGAGTGCAAATCTGACACCCTTCTCAGAAAAAAAAAA-AAAAATGCAGTATTTTTTCTGCCTGCATTCCTAACTGCAGGATAAATGCCTGGGGGCTTGAGAAAGGGAGGTGAAAAGAACATCTGATGAGGGTGGGATGTTTTTAGAAAAGTTCTACTTGCCAAGGAATGAGCTCCTGTCTGTCATGACGCAATCCTGGTTGACTCAGCAGAGCAAGAAACTTGTAGTAACAGAGCATTTAGTTCATTTATGCACATG-----ACACTCACTTGTTCAGCCAATGCCCCATGCTCTGGCTGTGCAGTGTGGAAtattttcctattgttgccataacaaatttccacaagctttgtggatgaaagcatgtt--tttcttaattatctcacagtgctatagctcagaagtacgaaatgcatctcactgggctgatatc-aaaggcacagcaaggctgaacttctttttaaggttccaagcaagaatctgctccttacatttcccagttcctagaggctcccacgttctttggcccctagaccccttcctccttcctcaaagcccatgaaggctggtcacgtctcacatggcatcattcagactcttcttcac--ccacacctctttctctgaatgctactctgcctttttcctcatcttt-aaggactttgggattctattggggtcaccaagat---aatccatcataatctccctaaaatcgtctaggataccctccttttcagttcagctgattagcaaccgtaattccatctgtaatcttcattcctccttt-catgtaaaataatatattcacaagctatggaggctaggacagggacattttggggtggggcagcattcgcctgccttccacaAATGGTAAACAGGGTGCATTCGGCCTCTGCTCTTGGGACACTGATATTGCAGATGGTTAAAAACGAGGGCAGAAAATGAATGCACAAGTGGATCAATAAATGAATGATCCATTGGGAAGCATCTGTGCACCAAATCTG--------tttttttggcttttgttttgtt-ttgaggtagagtctcactctgtcccacaggctggagtgcagtggcacaatctcaactcactgcaccctctgcctcctgggttcatgcaattcttctgcctcagcctaccgagtagctgggattacagccgcgcaccaccacactcggctaaaattttttggtatattttttagtagagatgaggtttcaccgtgttgtgcaggc-tgtctcaaactcccaatctcaagtaatctgaccgccttggcctccctaagtgcaaggattataggcgtgagccactgtgcccagccAGGATTTAAAATAAATAATAGATAATGCTgagtgtataatttcaggtgacagag
i macFas5.chr19                   I 657 C 0
s papAnu2.chr19                   47718744 1969 + 51301725 cattggaTGTAAATGCATGGATTATATCTGTGTTCTTCATTCTGctccattgttctatgtgcctTTCTTTATGccaatgccatgctgttttgcttactacaGCTCTGTAACATATTTTTAGATCAGGTAGAGTGAcgctcctgttttctttttatacctTGAACTCTCAAGACAGTGGGCATCACATACAAACATTATGGAGAAAAAGATCCCAGGATTCCCAGGGCCCAATATTAAATAACAGAGTG-TTGGCCATGAACCAACCTCAAATATTTCCATTGAGTAGAGGACAGGCAGCCtcatttcctcacctctctccttTCTTGTGTTCTAGGGAACCCTTCAAATGGTTGGCCTTCACCCACTGAACCAAGTTCCAAAACTGGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGAAACCTGGGGAGATGGAAGCCTTGGATTCAGGCGTTGACTCAGCATCTCGCAGCTCTGACATTGTGCGCCTGTCTTCCACCATCTCTGAACTCCAGACACTCCAACAGTGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTAATCTCTAATTTTATGGAGATGAGACCTCCTACAAGCTAGAAGAATGACTGCCAATCTGACATCCTTCTCAG---------G-AAAAATGCAGTGCTTGTTCTCCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTtgacagagggaagggaagggaacatcTGATGAGGGCGAGG-GGTTTTAGAGAAGTTCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGAAAAACCCTTG-AATAACAGAGAACAGAGCTCATGCACGCACACTTCAACTCACTGACTCATTCAGCCATGGCCCCATGCTCAGGCTGTGCAGT-TGGAATCCTTTCCTACTGTTGCCATAACAAATTTCCACAAGATTCGTGGGTGAAAACAAAACGGTTTTTTAATTATCTTACAGTGCTGTAGCTCA-AAGGATGAAATGCATCTTACTCGGCTAAAATC-AGGTG-ACAGCAAGCCTGCCTTCCTTCTGAAGGTTCCAGGCAAGAATTTGCTTCTCACTTGTCCCAGCTTCTAAAGGctcccacattccttggctcctggtgcccttcctccttcctcaaaACCCACAAAGACTggtcacatctcacatggcatTACTCAGACCCTTCTTCCTTACCACACTTCTTTCTCTGAATGCTGCTCtcccttcttcttcatttttggaaAACTCGGGGATTCTATTGGGTTCACCAAGATGAAAATCCATCATAATGTCCCTGAAATCATCCAGGATACCCTTGTCTTAAgttcagctgattagcaaccgtAATTCTGTCTGCAATCGTCATTCCTCCTTTCCGTGTAAAATAACGTATTCACAAGCTATGGAGGCTAGGACAGGGACATTTTGGAGTGggacagcattctcctgccttccaTAAACAGGAAACAAGATGCATTTGGCCTCTACTCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGGCA------GAATGCACAAGTGGACCAATAAATGAATGATCCATTGGGAAGCATCTGTGCAAGAAATCTA--------TTTGCTTG---TTCGTTTGTTTAtcaagacggagtctccctctgtcttccaggctacagtgcagtggcacgatctctgctcactgcaacctgtgcctcctggattcaagtgattctcctgcctcagcctctcgagtagctgggattacaggcaaccactaccacgcccggct-aattctttttgtatatttttt-gtagagaggatgtttcaccatgttggccaagcttgtctgaaactcccagcctcaagtgatctgaccgtctcaggctcccaaagtactgggattgcaggtgtgagccactgtgcccagccagaatttaaaataaataatggataATGCTGAGTGTATAATTTTGGGTGACAGAG
i papAnu2.chr19                   I 2 C 0
s chlSab2.chr6                    47397342 1973 + 50890351 cattggatgtaaatgtatggattatatctgtgttcttcattctgctccgttgttctatgtgcctttctttatgccaatgccatgctgttttgcttactatagctctgtaacatatttttagatcaggtagagtgacgctcctgtgttctttttATACCTTGAACTCTCAAGACAGTGGGCGTCACATACAATCATTATGGAGAAAAGGATCCCAGGATTCCCAGGGCCCAATATTAAATAACAGAGTG-TTGGCCATGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACATGTAGCCTCATTTCCTCACCTCTCTCCTTTCTCGTGTTCTAGGAAACCCTTCAAATGGTTGGCCTTCACCCACTGAACCAAGTTCCAAAACTGGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGGAACCTGGGGAGTTGGAAGCCTTGGATTCAGGCGTTGACTCAGCATCTCGCAACTCTGACATTGTGCGCCTGTCTTCCACTATCTCCGAACTGCAGATACTCCAACAGTGAAAGGGATCTGGGCCCAACACAGGGCTCAGTTAAATCTCTTAATCTCTAGTTTTATGGAGATGAGCCCTCCTACAAGTTAGAAGAATGACTACCAATCTGACATCCTTCTCAG---------G-AAAAATGCAGTGCTTGTTCTCCCTGCATTCCTAACTGGAGGATAAATTCCT-GGGGCTTGACAGAGGGAAGGGAAGGGAACATCTGATGAGGGCAAGG-GGTTTTAGAGAAGCTCCACTTGTCAAGGAATGAGCTCCTGTTGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCAGTAACAGAGAACAGAGCTCATGCATGCACACTTCAACTCACTGACTCATTCAGTCATGGCCCCATGCTCAGGCTCTGCAGT-TGGAATCCtttcctactgttgccataacaaatttccacaagattcgtgggtgaaaacaaaatggttttttaactatcttacagtgctgtagctca-aagaatgaaatgcatctcactgggccaaaatc-aggtg-acagcaaggctgccttccttctgaaggttccaggcaagaatttgcttctcacttgtcccagcttctaaaggctcccacattccttggctcctggtgcccttcctccttcctcaaaactcacaaagactggtcacatctcacatggcatcactcagacccttcttccttaccagacttctttccgtgaatgctgctcttccttcttcttcatctttggaaaacttgggaattctattgggttcaccaagatgaaaatccatcataatctccctgaaatcatccaggatacccttgtcttaagttcagctgattagcaaccgtaattctgtctgcaatcgtcattcctcctttccgtgtaaaataacgtattcacaagctatggaggctaggacagggacattttggagtgggacagcattctcctgccttccataAACAGGAAACAAGATGCATTTGGCCTCTGCTCTTGGGACACTGATATTGCAGATGGTCAAATGGGAGGGCAGAAAATGAAGGCACAAGTGGACCAATAAATGAATGATCCATTGGAAAGCATCTGTGCAAGAAATCTA--------TTTGCTTG---TTCGtttgtttatcgagacggagtctccctctgtcttccaggctacagtgcagtggcaagatctcggctcactgcaacctgtgcctcctggattcaagtgattctcctgcctcagcctctcgagtagatgggattacaggcaaccactaccacacccggct-aattctgtttgcatatttttt-gtagagaggatgttttaccatgttggccaagcttgtctgaaactcccaacctcaagtgatctgaccgtctcagcctcccaaagtactgggattacaggtgtgagccactgtgcccagccAGAATTTAAAATAAATAATAGATAATGCTGAGTATATAATTTTGGGTGACAG--
i chlSab2.chr6                    I 4 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e rheMac3.chr19                   60526109    0 + 64156825 C

a score=232996.000000
s hg38.chr19_GL949751v2_alt         731816 151 +  1002683 AAGGTCTCACTATTCAG---ATATTTGTGACATTAATGAAAAACACGGATTGAACCCCTGAAAGATTGGCGGAAGGATTTTGCACACACAGCTGTCAGCCGTGAAGGCACAAAGGTGAAAACAATCT---GATGTGGAAGGAAGAGGCTCTGC-CTCA
s panTro4.chr19                   59666894 151 + 63644993 aaggtctcactaaacag---atatttgtgacattaatgaaaaacacggattgaacccctggaagattggcagaaggattttccacacacagctgtcagccgtgaaggcacaaaggtgaaaacaatct---gatgtggaaggaagaggctctgc-ctga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56624786 152 + 60714840 AAGGTCTCACTAATCAG---ATATTTATGACATTAATCAAAAACACGGATTGAACCCCTGAAAGATTGGCGGAAGGATTTTCCACACACAGCTGTCAGCCGTGACGGCACAAACGTGAAAACAATCT---GATGTTGAAGGAAGAGGCTCTGCATTCA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    20962 149 -    21488 AGGGTCTCACTAATCAC---ATATTTGTGATGTTAATGAAAAAAATGGATTCAACCCATGGAAGACTGGTGGAAGGATTTTC--CACACAACTGTCAGCCGTGAAGGCACAAAGGTGAAAACAATCT---GATGTTGAAGGAAGAGGCTCTGC-CTGA
i nomLeu3.chr10_GL398297_2_random I 15601 T 15750
s macFas5.chr19                   55631096 157 + 59248254 aaggtctcactgatcagataatatttatgaccttaatgaaaaaaatggattcaacccttggaagattggcagaaggattttgcacactgagctctcagctgtgaaagcacaaaggtggaaacattcttaataagttcaaggaagaggctctgc-ctga
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47720713 151 + 51301725 AAGGTCTCACTAATCGG---ATATTTGtgacattaatgaaaaaaatggatTGAATCCCTGAAAGACTGGCGGAAGGATTTTCCACACACAGCTGTCAGCCTTGAAGGCACAAAGGTGAAAACAATCT---TATGTGGAAGGAAGAGGCTCTGC-CTGA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47399315 150 + 50890351 -AGGTCTCTCTAATCGG---ATATTTGTGACATTAATGAAAAAAATGGATTGAATCCCTGAAAGACTGGCAGAAGGATTTTCCACACACAGCTGTCAGCCTTGAAGGCACAAAGGTGAAAACAATCT---TATGTGGAAGGAAGAGGCCCTGC-CTGA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=3973790.000000
s hg38.chr19_GL949751v2_alt         731967 2466 +  1002683 AATGCTGGGAATGATGTGGGGAGAATGACAAGACGACTGTAGAGAGACGGAGAGCACACTGGGTACACAGGAAACTAAGGAGCAACAAGGAGTGTGTGTTTGACACTCACAGCCATTGGATTCACCTCGGGG-TAACCAGGAATCCCTACATGATTAATA-TGACTGACATGAAAATAAGGGAGGCTCAGTTGCATAACTGGAATCTAGGAGACCGTGGAAAAGGCAATTGCCACCCCACTGGTGAAATGTGGTGCTGATTTAGACACTAAATGAATGAAGTAGATGGATATAAGATATGTTTGTGAGGTAGAATCATTGACTGGAAACGCTTACTGGGTTTGA-TTTTCCTACTTGTTTAATCCTCGCTTAATTAATTTCTTTCTGAGATTTA--TTCATCCTACACATAAATCAATACCTGGCAAAGGAGTGACAGATATATGAGTGGTGGTGGAAATGAAGAGACTTAT-TATAGCATAATATACAAGTCTGTGAAcagtggctcacgcctgtaacctagcactgcaggaggccaaggtgggtggattccatgaagtcaggagttccagaccagcctggccaacgtggtgaaaccctatctctactaaaaatacaaaaattagccgagcacgatggtgcatccctgtaatcccagctcctattctggaggatgaagcaggagaatgacttcaacccagtaggtggaggttgcagtgagtggagattgcatcactgcactccagcctgggggacacaaggagactctatctcaaaaaat-aaaaataagaaaTACATAAATATAATAAAACACACACGAATGACAAAGGCACCTGAATTCCAATCATCGTTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCAATGAGCTTAAAACCTCTTCCCTATTTGGCTTTCTGTGAGAATGAGATCACATAGAAAATGTGAAAGCCCTCAGAATCCTCCAGCACAGATCGTGGAATAGAGAAAGTGCTCTGTTCATCGCAACAAAAAACTTGCCCACTCACCCAAATCCCCCACCTCACCCCTACTTCCA--ATCACCTGTGGAGATTCAGATAGGCTATGGGGAGGTAAACATTGATACTCCTTGGAGTGAGTCCAGATCTTGGAATCAGAGATCAGTGCCAGCACTAGCTCCTGCTCCCCTTTCCTACTAATTCACAGGAGGACAGGTGGTATTGAAGCAATAGATGGCCGAGGGGGTGGTCCTTCCCCCAGCCTCTCGGGTAGAACAGCAGCCTAACATGTGTCTCCCGAGATCACAAAGAGTAGCACGTTTCACACGGGCTTCAACACTATTTCCTGGCCATTTGACATAAGAGAATTCTACTTAGCTTTTT-TT-ATCTTGATTTCACTTTTGTTTCCTTTTCTTGGAGAATGCAAGTTGTTTGATTCAAGAATGCTGTGGATGTAGAAATCCTAAAGCACATTCGCTGTGTATCAATCCCAGTGCAGTCTTCCCAGAGAAGACTCTAAATACCTCCTGGactgcacctgggcttatgccaattcctatcactcaccgtcactccagggagacagaacacacagagaatacattacacaggcaggttcattactaacagataagcagcgagtgacaacagaaacctacatttcaatgtgagccagtccctcaaggctcagaaaagctactcgggacatatggagtcaccccatttgcagtgtagctgggggaagccagagagcagcccagcctgggttttgtactgtggagccacaggaagcactcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacagcccaggctgttctgagacgttcctcctgatctcaggacgttgctgtcttagtccatttttg---------------------------ttgctct--------------------------------------------------aaaggaacacttgagcctgggtaacttctagagaaaagagattggtttgcctcacagttctgcaggctgtactggaagcgtggcaccagcatctatttctcgtgacggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgcagagaccacagagatcacacggcaagagagggagcaagggggagggggagcgatggagcttccaagctcttttgaacaaccagctctccaggaactaatagaaggggaacttgctaaccccgtctccttgggacagcattggtctgttcatgatggatccacctccatgacccaaacacctctcaagaggcccaacctcccacagtgggggtgaaatttcaatgtgaggtttgaaggggtcaaacatctcaactaaagtagttgtatcctcaacacgttctatggttactatgagagctataactgagaaagcaggagaaagctgggtcTCCCTCCATCTGGGTGCTTGTCCTAAAGGGGTGTTGTATGTGGTTACCTGTCAATCAAGAAATGTGAGACAATTCAT
s panTro4.chr19                   59667045 2465 + 63644993 aatgctgggaatgagatggggagaatgacaagacgactgtggagagacggagagcACACTGGGTACACAGGAAACGAAGGAGGAACAAAGGGTGTGTGTTTTATACTCACAGCCATTGGATTCACCTCAGGG-TAACCAGGAATCCCTACATGATTAATAGTGACTGACATGAAAATAAGGGAGGCCCAGGCGTGTAACTGGAATCTAGGAGACTGTGGAAAAGGCAATTCCTGCCCCACTGGTGAAATGTGGTGCTGATTTAGACCCTAAGTGGATGAAGCAGATGGATATAAGCTATGCTTGTGAGGTGGAATCATTGGCTGGAAAGGCTTGCGGGGTATGA-TTTTCCTAGTTGTTTAATCCTCGCTTAATTAATTTCTTTCTGAGATTTA--TTCATCCTACACATAAATCAATACCTGGCAAAGGAGTGACAGATATATGAGGGGTGGTGGAAATGAAGGGACCTAT-TATAGCATAGCATACAAGTCTGTGAAcggtggctcactcctgtaacccagcactgcaggaggccaaggcgggtggattcgatgaagtcaggagtttcagaccagcctggccaacatggtgaaaccctatctctatgaaaaatacaaaaattagccgagcatggtggtgcatccctgtaatcccagctcctactctggaagatgaagcaggagaatgacttcaacccaggaggtggaggttgcagtgagtggagattgcatcactgcactccagcctgggtgacacaaggagactctgtcctaaaaaat-aaaaataagaaaTGCATAAATATAATAAAACACACATGAATGACAAAGGCGCCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTCATCCGTTAGGCAATCAGCCTAAAACCTCTTCCCTATTTGGCCTTCTGTGAGCATGAGATCACATAGAAAATGTGAAAGCCCGCTGAATCCTCCAGCACAGATCCTGGAATAGAGAAAGTGCTCTGGTCATCACACAAAAAAA--TGCCCTCTCACCCAAAT-CCCCACCTCACCCCTACTTCCA--ATCACCTGTGGAGATTCAGATAGACCATGGGGAGGTAAACATTAATACTCCTTGGAGTGAGTCCAGATCTTGGAATCAGAGATCAGTGCCAGCACTAGCTCCTGCTCCCCTTTCCTACTAATTCACAGGAGGACAGGTGGTATAGAAGCAATAGATGGCCGAGGAGGTGGTCCTTCCCCCAGCCTCTCGGGTAGAACAGCAGCCTAACATGTGTCTCCCGAGATCACAAAGAGTAGCACGTTGCACACGGGCTTCAACACTATTTCCTGGACGTTCGACATAAGAGAATTCTACTTTGCTTTTT-TTAATCTTGATTTCACTTTTGTTTCCTTTTCTTGGAGAATGCAAGTTGTTTGACTCAAGAATGCTGTGGATGTAGAAATCCTAAAGCACATTCGCTGTGTATCAATCCCAGTGCAGTCTTCCCAGAGAAGACTCTAAACACCTGCTGGactgcacctgggcctatgccaattcctatcactcaccgtcactccagggagacagaacacacagagaatacattacacaggcaggtgcattactaacagataagcagcgagtgacaacagaaacctacatttcaatgtgagccagtccctcaaggctcagaaaagctgctcgggacatatggagtcatcccatttgcagtgtagctgggggaagccagaaagcagcccagcctgggttttgtaccctggagccacaggaagccctcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacagcccaggctgttctgagacattcctcctgatctcaggacgttgctgtcttagtccatttttg---------------------------ttgctct--------------------------------------------------aaaggaacacttgagcctgggtaagttctaaagaaaagagattggtttgcctcaccgttctgcaggctgtactggaagcatggcaccagcatctatttatcgtgatggcctcaggctgctcccactctggcagaagggaaagagggtctgtccgtgcagagaccacggagatcacacggcaaccgagggagcaaggaggagggggagcaatggagtttccaagctctttttaacaatcagctctccaggaactaatagagggggaacttgctaaccccgtttccttgaaacagcattgatctgttcatgatggatccacctccatgactcaaacacttcccaagaagcccaccctcccacactgggggttaaatttcaatgtgaggtttgaaggggtcaaacatctcaactaaagtagtggtatcctcagcacgttcgatggttactatgagagctataactgagaaagcaggaggaagctaggtctcccgccatctgggtgcttgtcctAAAGAGACGCTGTATGTGGTTACCTGTCAATCAAGAAATGCAAGACAATTCAT
i panTro4.chr19                   C 0 I 2202
s ponAbe2.chr19                   56624938 2448 + 60714840 AATGCTGGGAATGAGTTGGGGAGAATGACGAGATGACTGTAGAGAGATGGAGAGCACACTGGGTACACAGGAAACTAAGGAGGAACAAGGAGTGTGTGTTTGATACTCACAGCCATTGGATTCAACTCAGGG-TAACTAGGAATCCCTACATGATTAATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGCATAACTGGAATCTAGGAGACTGTGGAAAAGGCAATTCCTGCCCCACTGGTGAAATGTGGTGCTGATTTAGACACTAAGTGGATGAAGCAGATGGATATAAGATATGTTTGTGAGGTAGAATCATTGGCTGGAAAGGCTTGCTGGGTTTGA-TTTTCCTAGTTGTTTAATCCTAGCTTAATTAATTTCTTTCTGAGATTTA--TTCCTCCTACGCATAAATCAATACCTGGCAAAGGAGTGACAGATATATGAGGGGTGGTGGAAATGAAGGGACCTAT-TATAGCATAATATACAAGTCTGTGAAcggtggctcactcctgtaacccagcactgcaggaggccaaggcgggtggattccatgaagtcaggagttcgagaccagcctggccaacatggggaaaccctatctctactaaaaatacaaaaattagctgagcatggtgatgcatccctgtaatcccagctcctactctggaggatgaagcaggagaatgacttcaacccaggaggtggaggttgcagtgagtagagattgcatcactgcactccagcctgggcgacacacggagactctgtctcaaaaaat-aaaaataagaaaTGCATAAATATAATAAAACACACACGAATGACAGAGGCACCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTacttctttgatcctttatcttatccattaggcaatcaccctaaaacctcttccctatttggttttctgtgagcatgagatcatatagaaaatgtgaaagcccgctgaatcctccagcacagatcctggaacacagaaagtgctcTGTTCATAGCA-AAAAAAACTTGCCCCCTCACCCAAATCCCCCACCTCAGCCCTACTTCCA--ATCACCTGTGGAGATTCAGATAGACCATGGGGAGGTAAACATTAATACTCCTTGGAGTGAGTCCAGATCTTGGAATCAGAGATCAGCGCCAGCACTAGCTCCTGCTCCCCTTTCATACTAATTCACAGGAGGACAGGTGGTATTGAAGCAGTAGATGGTGGAGGGGGCGGTCCTTCCCCCAGCCTCTCGGGTGGAACAGCAGCCTAACATGTGTCTCCTGAGATCACGAAGAGTAGCACGTTTCACACGGGCTTCAACACTATATCCTGGCTGTTTGACATAAGAGAATTCTACTTCGCTTTTT-TT-ATCTTGATTTCACGTTTGTTTCCTTTTCTTGGAGAATGCAAGTTGTTTCACTCAAGAATACTGTGGATGTAGAAATCCTAAAGCACATTCGCTATATATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGTACTGCGCCTGGGCCTATGCCAATTCCTATCACTCACCGTCACTCAAGGgagacagaacacacagagaatacattacataggcaggttcattactaacacataagcagcgagtgacaagagaagcctacatttcaatgtgagccagtccctgaaggctcagaaaagctgctcgagacatatggagtcacttcatttgcactgtagctgggggaagccaaaaagcagcccagcctgggttttgtacccaggagccacaggaagcactcagctaaaacactgcatgatgtcctcctccagggagaacaggaagacagcccaggctgttctgggacattcctcctgatctcaggatgttgctgtcttagtccatttttg---------------------------ttgctat--------------------------------------------------aaaggaacacttgagcctgggtaacttctaaagaaaagagatttgtttgcctcacagttctgcaggctgcactggaagcacggcaccagcatctatttcctgtgacggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgc--agaccacagagatcacacggcaagagagggagtaagggggagggggagcgatggagcttccaagctctttttaacaaccagctctcca---------------ggaacttgctaaccccgtcg-tttggggcagcattgatctgttcatgatggatccacctccatgactcaaacaccttcccataggcccaaactcccaccctgggggttaaatttcaatgtgaggtttgaaggggtcaaacatctaaactaaagtagttgtatcctcagcacgttctatggttactatgagagctataactgagaaagtgggagaaagctaggtctcccgccatctgggtgcttgtcctAAAGAGACGTTGTATGTGGTTACCTGTCAATCAAGAAATGCGAGACAATTCAT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     5361 2536 -    21488 AATGCTGGGAATGAGATGGGGAGAATGGCAAGTCGACTGTAGAGAGACGGAGAGCACACTGGGTACACAGGAAACTAAGGAGGAACAAGGAGTGTGTGTTTTATACT--CAGACATTGGATTCACCTCGGGG-TAACTAGGAATCCCTACATGATTAATAGCGACTGACATGAAAATAAGGGAGGCCCAGGTATGTAACTGGAATCTAGGAGACTGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGATTTCGACACCAAGTGGATGAAGTAGATGGATATAAGATATGTTTGTGAGGTAGAATCATTGGCTGGAAAGGCTTACTGGGTTTGA-TTTTCCTAGTTGTTTAATCCTTGCTTCATTAATTTCTTTCTGAGATTTA--TTCATCCTACACATAAATCAATACCTGGCAAAGGAGTGACAGATATATGAGGGGTGGTAGAAATGAAGGGACCTAT-TATAGCATAATATACAAGTCTGTGAAcggtggctcgctcccgtaacccagcactgcaggaggccaaggctggtggattccatgaagtcaggagttcgagaccagcctggccaacatggggaaaccctatctctactaaaaatacaaaaattagccgagcatggtggtgcatccctgtaatcccagctcctactctggaggatgaagcaggagaatgacttcaacccaggaggtggaggttgcagtgagtcgagatcgcatcactgaactccagcctgggtgacacaaggagactccatctcaaaaaat-aaaaaaaagaaaTGCATAAATATAACATAACACACACGAATGATGCAGGCACCTGAATTCCAATCATCA-TTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCAATCAGCCTAAAACCTCTTCCCTATTTGGCTTTCTGTGAACATGAGATCATGTGGAAAATATGAAAGCCCAGTGAACCCACCGGCACAGGTCCTGGTATAGAGAACGTGCTCTGTTCATGGCA---TAAAACTTGCCCCCTCACCCAAATCCCCCACCTCACCTCTACTTCCA--ATCACCTGTGGATATTCAGATAGACCATGGGGAGGTAAACACTAATACTCCTTGGAGTGAGTTCAGATGTTGGAATCAGAGATCAGCGCCAGCACTAGCCCCTGCTCCCCTTTCCTACTAATTCACAGGAGGACAGATGGTATGGAAGCAACAGATGGTCGAGGGGGTGGTCCTTCCCCCAGCCTCTCGGGTGGAACAGCAGCCTCACATGTGTCTCCCGAGATCACAAAGAGTAGCACGTTTCACACCGCCTTCAACACTATTTCCTGGCTGTCTGACATAAGAGAATTCTACTTCGCTTCTT-TT-ATCTTGATTTCACTTTTGTTTCCTTTTCTTGGAGAATGCAAGTTGTTTGACTCAAGAATTCTGTGGATGTAGAAACTGTAAAGCACATTCGCTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTaaacacctcctgtactgcacccggggctatgccaattcctatcactcaccgtcactccagggagacagaacacacagggaatacattaaatagacagattcattactaacagataagcagc-agtgacaacagaagcctac-tttcactgtgagccagtctctcaaggctcagaaaagctgctcgggatatatggagtcaccccatttgcagtgtagctggaagaagccagaaagcagcccagcatgggttttgtaccctggagccacaggaagcactcagctaaagcactgcatgacatcctcctctaggaagaataggaagacagcccaggctgttctgggacattcctcctgatctcaggacattgctgtcttagtccattttTgggaggcggagcttgcagtgagccctgattgcgccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaaaagaaCacttgagcctgggtaacttctaaagaaaagagatctgtttgcctcacagttctgcaggctgtactggaagcatggcaccagcatctatttcctgtgacggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgcagagaccacagagatcacagggcaagagagggagcaagggggagggggagcagtggagcttccaagctctttataacaaccagctctccaggaactaatagagggggaacttgctaaccccgtctccttgggacagcattgatctgttcatgatggattcactgccatgacccaaacacctcccaagaggcccaacctcccacaatgggggttaaatttcaatgtgaggtttgaaggggtcaaacatctaaactaaagtaGTTGTATCCTCAGCACTTCCTATGGTTACTATGAGAGCTATAACTGAGAAAGCAGGAGAAAGCTGGGTCTCCCACCATCTGGGTGCTTGTCCTAAAGAGACACTGTATGTGGTTACCTGTCAATCAAGAAATGCGAGACAATTCAT
i nomLeu3.chr10_GL398297_2_random T 15750 C 0
s macFas5.chr19                   55631253 2462 + 59248254 aacgctgggaatgagatggggagaattacaagaCCACTGGAGAGAGACAGAGAGCACACTGGGCACACAGGAAACTAAGAAGGAACAAGGAGTGTGTGTTTTATACTCTCAGCCCTTGGATTCAACTCAGGGCTAACTAGGAATCCCTAAGTGATTAATAGTGACTGACGTGAAAATAAAGGAGGCCCCGGTGCGTAACTGGAATCTAGGAGATTGTCGAAAAGGCAATTCCCACCCCACTGGTGAAATGTAGAGTTGATTTACACACTAAATGAATGAAAG--ATGGATATAAGATATGTTTGTGAGGTAGAATCATTTGCAGGGAGGTCTTGCTGGGTTTGATTTTTCCTAGTAGTTTAATCCTTGTTTCATTAATTTCTTTCTGAGATGTATTTTTTTTCTACATCTAAATCAATACCTGGCAGAGGAGTAATGGACACATGAGGGGTGGTGCAAATGAAAGGACCTAG-TATAACATAATATACGAGAC--TGGATgggggctcatgcctgtaacccaacacttttggatgccaaggtgggtgcatcctttgagggtaggagtttgagaccagcctggccaacatggtgaaaccctgtgtgtgctaaaaatacaaaaattagcctggtgcattggcacgtgcctgtaatcccag---ttactagggaggctgaagcaggagaatggcttcaaccctggaggcagaggtttcagtgagctgagatggtgccactgcactccagcctgggcaacacagggggactctgtctcaaaaaataaaaaataaaaaaTACATAAATATGATATAACATACACAAATTACAAAGGCACCTGAATGCCAACCATCATTTTTCTACTTCTCTGTCTTTAATTCTTTGACCCTTTATCTTATCCATTAAACAATCAGGCTAAAACCTCTTCCTTATTTGGCTTTCTGTGAGTTTGAGATCATACAGAAAATGTGGAAGCCCCCTGAACCCACCAACGCAGGCCCTGGAATAGAGAATGTGCTCTGTTCATGGTA---TAAAACTTGCCCTGTCACCCAAATCCCCCACCTCACTCCTACTTCCA--ATCACCTGTGGAGATTCAGATAGATCATGGGGAGATAAAAACCAATACTCTTTGGAGTGAGCTCAGATCTTGGACTCAGAGACCAGCGCCAGCACTATCTCCTGGTCACATTTCGTACTAACTCACAGAAGAACAGGCTGTATTGAAACAATAGATGATGGAGGTGGTTGTGCTTCCCACTGCCTCTCAGGTAGAACAACAGCTTAATA-ATGTCTCAGGAGATCACAAAAAGTAGCACGTTATTCCTGGGCTGCATCATTATTTCATGGCTGTTTGATTTAAGTCAGATTTACTTCACCTTTTCTG-ATCTTGATTTCACTTTTTATTTCTTTTCTTGGAGAATGTAATTTTTTTGAGTCAAGAGGGTTGTGGCTGTAGAAATTGTAAAGCACATTCACTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTaaacacctcctgtactgcacctggggctatgccagtttctatccctcaccgtcactccagggagacagaacacacagagaatacatgacataggcaggttcattactaacacataagcagcaactgacaacagaagcctatatttcgatgtaagccagtcccccaaggctcagaaaagctgttcgggatatatggagtcaccccatttgcactgcagctgggggaacccacaaagcagccctgcctgggttttgtaccctggagccacaggaagcactgagctaaagcactgcatgacgtcctcctctgggaagaacaggaagacagcccaggctgttctgggacgttcctcctgatctcaggatgttgccgtcttagtccctttttg---------------------------aggctat--------------------------------------------------aaaagaacacttgagcctgggtaacttctaaagaaatgagatttgtttgcctcacagttctgcaggctgtactagaagcatggaaccagcatctatttcttctgatggcctcaggctgctcccactctggcagaaaggaaggagggtctgtgtgtgcagagaccacagagatcacacagcaagagagggagcaaggggaagagggagcgatggagcttccaagctctttttaacaaccagctctccaggaactaatagagggagaacttgctaaccctgtctccttgggacagcattgatctattcacgatggatccacctccatgacccaaacacctcccaagaggcccaacctcccacactgggggttaaatttcaatgtgaggtttcaaggggtcaaacatctaaactaaagcagtggtatcctcagcacattctatggttactatgagagctataagtgagagaggaggagaaagctgggtcTCCTGCTATCTGGCTGTTTGTCCTAAAGAGACGTTGTATATGGCTACCTGTCAATCAAGAAATGCGAGACAATCCAT
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47720864 2458 + 51301725 AACGCTGGGAATGGGATGGGGAGAATTACAAGACcactggagagaga-ggagagcacACTGGGCACACAGGAAACTAAGGAGGAACAAGGAGTGTGTGTTTTATACTCACAGCCATTGGATTCACCTCAGGG-TAACTAGGAATCCCTACATGATTAATAGTGACTGACATGAACATAAGGGAGGCCCAGGTGTGTAACTGGAATCTAGGAGACCGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGATTTAGACACTAAATGAATGAAGGACATGGATACAGGATATGTTTGTGAGGTAGAATCATTTGCAGGGAGGACTCACTGGGTTTGA-TTTTCCTAGTTGTTTAATCCTTGCTTAATTAAATTCTTTCTGAGATTTA--TTCCTCCTACACATAAATCAATACCTGGCAGAGGAGTGACAGATAGATGAGGGGTGGTGGAAATGAAGGGACCTAATTACAACATAATATACAAGGCTGTGAACGGTTGCTCATGCCTCTAACCCAGCActgcaggaggccaaggcaggtggattccatgaagtcaggagttcaagaccagcctggccaacatggtgaaaccctatctctaataaaaatacaaatattagctgagcatggtggtgcatgcctgtaatcccagctcctactctggaggaggaagcaggagaatgacttcaacccaggaggtggaggttgcagtgagtcgagatcacatcactgcactccaacctgggtgactcaaggagactccgtctcaaagaat-aaaaataagacatgCATAAATATAATGTAACACACATGAATGACAATGGCACCTGGATTACCAtcatcatttttctatttctctataatTACTTCTTTGATCCTTTATCTTATCTATTAGGCAATCAGCCTAAAACCTCTTCCCCATTT-GCTTTCTGTGAGCTTGAGATcatatagaaaatatgaaagcTCCCTGAAGCCACCAGCACAGGTCCTGGAATAGAGGAAGTGCTCTGCTCATCGCA---AAATGCTGGCCCCCTCACCCAAATCCCCCACCTCACCCCTACTTCCA--ATCACCTGTGGAGATTCAGATAGACCATGGGGAGGTAAACACTAATACTACTTGCAGTGAGTTCAGATCTTGGAATCAGAGATCAGCATCAGCACTAGCTCCTGGTCCCCTTTCCTACTAATCCACGGAAGGACAGGTTGTATTGAAGCAATAGATGGTGGAGGGCATTGTCCTTCCCCCAGCCTCTCGTGTAGAACAGCAACCTAAAATATGACTCCCAAGATCAC-AAAAGTAGCACGTTTCCAACGGGCTTCAACGCTATTTCCTGGCTGTTTGACGTAAGAGAATTCTGCTTCGCGTTTT-TG-ATCttgatttcacttttctttccttttcttggagAATGTAA-TTGTTTGAGTCAGGAGTGCTGTGCATGTAGAAATCCTAAAGCACATTCACTGTGCATGAATCCCAGTTCAGTCTTTCCAGAGAAGACTCTTAACACCTCCTGTACTGCACCTGGGGCTATGCCAATTCCTATCACTCACCGTCACTCCAGGGAGACAGAACACACAGAGAATACGTGACATGAGCAGGTTCATTACTAACACAAAAGCAGCAAGTGACAACTGAAGTGTATATTTCAATGTGAGCCAGTCCCTCAAGGCTCAGAAAAGCTGCTCAGGACATATAGAATCACCCCATATGCAGTGTATCTGGGGGAACCCGAAAATCAGCCCAGCCTGGGTTTTGTACCCTGGAGCCACAGGAAGCACTGAGCTAAAGCACTGCATGACGTCCTCCTCTGGGAAGAACAGGAAGACAGCCCA-GCTGTTCTGGGACGTTTCTCCTGATCTCACGATGctaatgtcttagtccatttttg---------------------------ttgctat--------------------------------------------------aaaagaacacTTGAGCCTGGGTAACTTCTCAAGATAAGCGATTTATTTgcctcacaattctgcaggctgtactagaagcatggcaccagcatctatTTCTTGTAATGACCTCAGGCTGCTCCCACTCtggcagaagggaaggagggtCTGTGTGTGCAGAGACCACAGAGATCACACGGCAGGAGAGGGAGCAAGGGGAAG-GGGCACAATGGAGTTTCCAAGCTCTGTTTAAAAACCAGCTCTCCAGGAACTAATAGAGGGAGAACTTGCTAACCCCGTCGTA-TGGGacggcattaatctattcatgatggatccacctccatgacccaaatacGTCCCAATAGCCCCAACCTCCCACATTGGCGGTTAAATTTCAATGTGCTGTTTGAAGGGGTCAAACATCTAAACTAAAGCAGTTGTATCTTCAGCACATTCTATGGTTACTATGAGAGCTATAACTGAGAAAGCAGGAGAAAGCTGAGTCTCCCACCATGTGGGTGCACGTCCTAAAGAGACGTTGTATATGGTTACCTGACCATCAAGAAATGCGAGACAATCCAT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47399465 2462 + 50890351 AACGCTGGGAATGAGATGGGGAGAATTACAAGACCACTGGAGAGAGA-GAAGAGCACACTGGGCACACAGGAAACTAAGGAGG-ACAAGGAGTGTGTGTTTTACACTCACAGCCATTATATTCACCTCAGCG-TAACTAGGAATCCCTACATGATTAATAGTGACTGACATGAACATAAGGGAGGCCCAGGTGCGTAACTGGAATCTAGGAGACCGTGGAAAACGCGATTCCCGCCCCACTGGTGAAACGTGGTGCTGATTTAGACACTAAATGAATGAAGGACATGGATATAAGATATGTTTGTGAGGTAGAATCATTTGCAGGGAGGACTCGCTGGGTTTGA-TTTTCCTAGTTGTTTAATCCTTGCTTAATTAAATTCTTTCTGAGATTTA--TTCCTCCTGCATGTAAATCAATACCTGGCAGAGGAGTGACAGATAGATGAGGGGTGGTGGAAATGAAGGGACCTAATTACAACATAATATACAAGGCTGTGAAcggttgctcatgcctctaacccagcactgcaggaggccaaggcaggtggattccatgaagtcacgagttcaagaccagactggccaacatggtgaaaccctatctctaataaaaatacaaatattagctgagcatggtggtgcatgcctgtaatcccagctcctactctggaggaggaagcaggagaatgacttcaacccaggaggtggaggttgcagtgagttgagatcacatcactgcactccaacctgggtgactcaaggagactctgtctcaaagaat-aaaaTTAAGAAATGCATAAATATAATGTAACATACATGAATGACAATGGCACCTGGATTACCATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCAATCAACCTAAAACCTCTTCCCCATTT-GCTTTCTGTGAGCGTGAGATCATATAGAAAATATGAAAGCTCCCTGAACCCACCAGCACAGGTCCTGGAATAGAGGAAGTGCTCTGCTCATCGCA---AAATGCTGGCCCCCTCACCCAAATCCCCCACCTCACCCCTACTTCCAATATCACCTGTGGAGATTCAGATAGACCATGGGGAAGTAAACACTAATACTCCTTAGAGTGAGTTCAGATCTTGGAATCAGAGATCAGCACCAGCACTAGCTCCTGGTCCCCTTTCCTACTAATCCATGGAAGGACAGGTTGTTTTGAAGCAATAGATGGTGGAGGGTATTATCCTTCCCCCAGCCTCTCGTGTAGAAGAGCAACCTAATATATGACTCCCGAGATCACAAAGAGTAGCACGTTTCCAATGGGCTTCAACGCTATTTCCTGGCTGTTTGACGTAAGAGAATTCTGCTTCGCGTTTT-TG-ATCTTGATTTCACTTTTCTTTCCTTTTCTTGGAGAATGTAAGTTGTTTGAGTCAAGAGTGCTGTGCATGTAGAAATCCTAAAGCACATTCACTGTGCATGAATCCGAGTTCAGTCTTCCCAGAGAAGACTCTTAACACATCCTGTactgcacctggggctgtgccaattcctatcactcaccgtcactccagggagacagaacacacagagaatatgtgacataagcaggttcattactaacacaaaagcagcaagtgacaactgaagggtatatttcaatgtgagccagtcccccaaggctcagaaaagctgctcaggacatatagaatcaccccatatgcagtgtatctgggggaacccgaaaatcagcccagcctggattttgtcccctggagccacaggaagcactgagctaaagcactgcatgacgtcctcctctaggaagaacaggaagacagcccaggctgttctgggacgttcctcctgatctcacgacgctaatgtcttagtccatttttg---------------------------ttgctat--------------------------------------------------aaaagaacacttgagcctgggtaacttctaaagataagcgatttatttgcctcacagttccgcaggctgtactagaagcatggcaccagcatctatttcttgtaatgacctcaggctgctcccattctggcagaagggaaggagggtctgtgtgtgcagagaccagagagatcacacggcaagagagggagcaaggggaag-gggcgcaatggagcttccaagctctgtttaacaaccagctctccaggaactaatagagggagaacttgctaaccccgtcgta-tgggacagcattaatctattcatgatggatccacctccatgacccaaatatgtcccaatagccccaacctcccacattgggggttaaatttcaatgtgctgtttgaaggggtcaaacatctaaactaaagcagttgtatcttcagcacattctatggttactatgagagctataactgagaaagcaggagaaagcggggtcTCCCACCATGTGGGTGCATGTCCTAAAGAGACGTTGTATATGGCTACCTGTCAATCAAGAAATGCAAGACAATCCAT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e rheMac3.chr19                   60526109    0 + 64156825 C

a score=3269781.000000
s hg38.chr19_GL949751v2_alt         734433 1992 +  1002683 AAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCCTCTTCTTCCAGGTAACCCCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGtcatcatcctcttcatcctcctcctcttctttctcctTCATCGCTGGTGCTGCAACAAAAAAA-GTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCACTCAGGTGTGTGTTCCTCACAGACAGGATGGTCCCTGGCCCAAGGCAGCAGCCACAGAGGGAGGACTTTCTAGAGAGAGCACCAGACTCCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCATGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCAGAGAGATAGAATGTCTGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGCTCCTATGGTCTCCCCCTGTATGTTGGTATCTGCTTATGAAATGAGGGCCCAGAAGTGCCCTCTGAGCTGTTTTGTTGACTTCCGTCTTCTACAGATGCTGTTGTAATGGACCAAGAGCCTGCAGGGAACAGAACAGTGAACAGGGAGGTAGGTGCTCCTCGGCCCAGCCTCGTGGCT--AGTGTTATTCCCAAAGAGTCCTGGAAAAT-GTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATATGCACAGTTGAATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATATCATCGTGTACACGGAACTTCCAAATGCTGAGCCCTGATCCAAAGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACTGGGTTGCCAGCTCCAATGTACCAGCAGCTGGAATCTGAAGGCGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACAAATCTGAACGTGCCTCTCCCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCacttgacccctgcccacctctccaacctaactggcttacttcctagt-ctacttgaggctgcaatcacactgaggaactcacaattccaaacatacaagaggctccctcttaacacggcacttaga--------------------cacgtgctgttccaccttccctcatgctgttccacctcccctcagactagctTTCAGCCTTCTGTCAGCAGTAAAACTTATATATTTTTTAAAATAATTTCAATGTAGTTTTCCCTCCTTCAAATAAACATGTCTGCCCTCATGG-TTTAGGTAATGGGACTCTTTTCTTGCCTAAGGCTTCCGGTGTTATCAGTACCATGTCCATATAATCCCATCTGTTCTCCACCGGGTTCTCACCTCTGGACTCTGAGCTTCTGGAAGCAGTGTGGAGCCTCATTTGTCTCTGGGACTCCAATTTCCATCCAAAGATGCAGCACATAGGAGGTTCCAAGGATCGGGAATCACATGAACAAGTGACATTGTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCACGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCATGGGGACACATATCAACACATCATCTTTCATACTATAAATATAcggtcactcctccgtatctgtggggtttacaggtctttattgaacaaagtataaatcaaaaatattcagag-aaaatatccacagagttccaaaactc--ataactatgttgaatggacacaaatgaagctgtgtgtaggctgtatcaggaattataagtaatcaag-agatgatttcatgtatacaggagg
s panTro4.chr19                   59671712 1993 + 63644993 aaaGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCCTCTTCTTCCAGGTAACCCCAAACACCTGCACGTTCTGATTGGGACCTCAGTGGTCAAAATCCCTTTCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGCTGCTCCAACAAAAAAAAGTAAGTCTCATGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCACTCAGGTGTGTGTTCCTCACTGGCAGGATGGTCCCTGGCCCAAGGCAGCAGCCACAGAGGGAGGACTTTCTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTGTCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCAGAGAGATAGAATGTATGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGCACCTATGGCCTCCCCCTGTATGTTGGTATCTGCTTATGAAACGAGGAGCCTGAAGTGCCCTCTGAGCTGTTTTGATGACTTCCATCTTCTACAGATGCTGCCGTAATGGACCAAGAGCCTGCAGGGAACAGAACAGTGAAGAGGGAGGTAGGTGCTCCTTGGCCCAGCCTCGTGGCT--AGTCTTATTCCCAAAGAGTCCTGAAAAAT-GTGAGCACCCTCCCTCACTCAGCATTTCCCTTGCTCCAGGATTCTGTTGAACAAGACTCTCAGGAGGTGTCATACGCATAATTGGATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGACGCCCAAGACACCCCCAACAGATACCAGCGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCACGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCGTCAGTCTTCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGTTTACAAATGTGTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTCCTTAGCCCAGAATTCTCCATTTCacttgacccctgcccacctctccaacctaactggcttacttcctagt-ctacttgaggctgcaatcacactgaggaactcacaattccaaacatacaagaggctccctcttaacgcagcacttaga--------------------cacgtgctgttccaccttccctcatgctgttccacctccactcagactatctttcagccttctgtcagcagtaaaacttataaatttttttgaataatttcaatgtagttttccctccttcaaataaacatgtctgtcctcatgg-tttcggtaatgggactctatttttgcctacgacttctggtgttatcattaccatgtccacataagcccatatgttctccactgggttctcacccctagactctgagcttctgtaagcagagtggagcctcatttgtctctgggactccaatttccatccaaagatgcagcacataggaggtTCCAAGGATCGTGAATCACATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCACGATGAAACATTTGTACAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATATCAACATATCATCTTTCATACTATAATTATAcagtcactcctccatatctgtgggatttacaggtctttattgaaccaagtataaatcaaaaatattcagag-aaaatatccacaaactttcaaaaagc--aagactgtgttgaatggacacaaatgaggcagtgtgtaggctgtatcaagaattataagtaaccaag-agatgattttatgtatacaggagg
i panTro4.chr19                   I 2202 C 0
s ponAbe2.chr19                   56627386 1988 + 60714840 CAAGAGCAACGGCTATGATTAGCTTCTTATTGGTGTCTCGTCTTCTTCCAGGTAACCCCAGACACCTGCACGTTCTGATTGGGATCTCAGTGGTCAAAATCCCTTTCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAAA-GTAAGTCTCACGAAGCAGGGGCCAGAGAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCAGGCAGGTGTGTGTTCCTCACTGGCAGGATAGTCCCTGGCCCAAAGCAGGAGCCTCAGAAGCAGGACTTTCTAGAGAGAGCACCAGACACCCTGCCTCTACCTTCAGCTGACAGACCAATGCGTGATTCGGAACTGTATCGTCATGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACACAATCAATGGGATGGGAACTCAGAGCTATTCAT-GGATGGGTCCTTGAGCTCAGAGAGATTGAATGTCTGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGCACCTACGGCCTCCCCCTGTTTGTTGGTATCTGCTTATGAAATGAGGACCCACAAGTGCCCTCCGAGCTGTTTTCTTGACTTCCGTCTCCTACAGATGCTGCTGTCATGGACCAAGAGCCTGCAGGGAACAGAACTGTGAACAGGGAGGTAGGTGCTCCTCGGCCCAGCCTCGTGGCT--ACTCTTATTCCCAAACAGTCCTGAAAAAT-GTGAGCACCCTCTCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAACAGGTGTCATACGCATAATTGGATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTTTCAGAGGCCCAAGACACCCCCAACAGATACCAGTGTGTACACGGAACTTCCAAGTGCTGAACCCAGATCCAAAGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGATGGGATCTTCTCGGGAGACAACAGGCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGCATCGCTCTTCCTCACACCATGAATCTGAACGTGCCTCTCTCTTGATTACAAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACT-GTTTGCTTAACCCACAATTGTCCATTTCacttgacccctggccacctctccagcctaactggcttacttcctagt-ctacttgaggctgcggtcacactgaggaactcacagttccaaacatacaagaggctccctcttaacacggcacttaca--------------------cacgtgctgttccacctcccctcatgctgttccacctttccacagactattttccagccttctctcagcAGTGAAACTTATAAAGTTTTTTG--TGATTTCAATGTAGCTGTCTCCTCTTCAAATAAACATGTCTGCCCTCATTGCTTTAGGTAATGTGACACTGTATTCCCTAAAAGAAACCGCTGTTATCATTACCATGTCCACGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAACAGGGTGGAGCCTGATTTGTGTCTGAGACTCCAATTTCCTTCCAAACATGCAGCACATAGGAGGTTCCAAGAATCGTGAATGAGAT-AACAAGTGATATTCTTACTCTCTGCAGACCTGCAAAGCCGGCAGAGTCATTCCACAATAAAACATTTGCAGAGTCATAGGTCTTGTTAGTCTCATCTCCACGAGGACACATATCAACACATCATCTTTCATACTATAAGTATAcagtcactcctctgtatctgtggggcttacaggtgtttattgaaccaagtataaatcaaaaatattcagag-aaaatatccacaaactttcaaaaagc--aaaactatgttgcatggacagaaatgaggtggtgtgtaggttgtatcaggaattataagtaatcaag-agacgatttaatgtatacatgagg
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     7897 1992 -    21488 AAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCATCTTCTTCCAGGTAACCCCAGACACCTGCACGTTCTGATTGGGACCTCAATGGTCATCATCCCCTTCGCCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAGA-GTAAGTCTCACGCAGCAGAGGCCAGACAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCACGCAGATGTGTGTTCCTCACTGGCAGGAAGGTCTCTGGCCCAAGGAAGGAGC--CAGAGGCAGGGCTTTGTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTACCCTCACGTCCCCTGCAGCCACTCACATCCAAGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCAGAGAGATAGAATGTCTGAGTCA-GCTGCTGGCAACTGAGGGACCTCAGGCACCTACGGCCTCCCCC-GTATGTTGGTATCTGCTTATGAAATGAGGACCCAGAAGTGCCCTCTGAGCTGTCTTGATGACTTCTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAACAGGGAGGTAGGTGCCCCTCAGCCCAGCCTCATGGATACAGTCTTATTCCCAAAGAGTCCTGAAAAAT-GTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATATGCACAGTTGGATCACTGCGTTTTCACACAGAGAAGAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCATCATGTACACGGAGCTTCCAGATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCACGAGCAGCACAGTCAGGCCTTGAGGGGGTCCTCTAGGGAGACAGCAGCCCTGTCTCAAACCCGGCTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGGATCGCTCTTCCTCACACCACAAATCTG---GTGTCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCCCTtgacctgtgcccacctctccaacctaactggcttacttcctagtcctacttgaggctgcgatcacactgaggaactcacaactccaaacacacaagaggctccttcttaacacagcacttaga--------------------cacgtgctgttccaccttccctcatgctgttccacctcccctcAGACTATCTTTCAGCC-TCTGTCAGCAGTAAAACTTATAAATTTTTTTTAATAATTTCTATGTAGTTTTCCCTCCTTCAAATAAACATGTCTGCCCTCATGG-TTTCGGTAATGGGACTCTTTTCTTGCCTAAGGCTTCCGGTGTTATTATTACTATGTCCATATAACCCCATCTGTTCTCCACTAGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAGGGTGGAGCCTGATTTTTCTCTGAGACTCCAATTTCCTTCCAAAGATGCAGCACATAGGAGGTTCCAAGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCACCATGAAACATTTGTAGAGTCACAGGCCTTGTTAGTCtcatctccacggggacacatatcaacacatcatctttcatactagaaatatacagtcgctcctccatatctgtggggtttacaggtgtttattgaaccaacaataaatcaaaaatattttgagaaaaaaatccctgaagtttcgaaaagcgaaaaactatgttgaatcgacacaaattgagtggtgtgtaggctgtgtcaggaagtataagtaatcaagaagatgatttcatgtatacaggagg
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s macFas5.chr19                   55633715 1987 + 59248254 AGAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCGTCTTCCTCCAGGTATCCCCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGTCATCATCCCCTTCACCATCCTCCTCTTCTTTCTCCTGCATCGCTGGTGCTCCAACAAAAAGA-GTAAGTCTCACGAAGCAGAGGCCACAGACCTCAGGGCCGTGTGGGGAAGTGGGATGGGAGCACGCAGGTGTGTGTTTCTCACTGGCAGGATGGTCTCTGGCCCAAGGCAGGAGCCACAGAGGCAGAGCTTTCTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGGCAGAATCACTGGGATGGGAACTCAGAGCTATTCATGGGATGAGTCCTTGAGCTCAGAGAGATAGAATGTCTGAGTCTGGCTGTTGGCAACTGAGGGACCTCAGGCACCTATGGCCTCCCCCTGTATCTTGGTATCTGCTTATGAAATGAGGACCCAGAAGTGTCCTCCCAGCTGTTTTGATGACTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCAGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTTGCCCCAGCCTCATGGATATAGTCTTATTCCCTAAGAGGCCTGAAAAATAGGAAGC-CCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACTCTGATGAACCAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACCGCGTTTTCACACAGAGAAAAATCGCTCGCCCTTCTCAGAGGCCCAAGAGACCCCCAACAGATACCAGCGTGTACATAGAGCTTCCAAATGCTGAGCCCAGATC----ATTGTCTCCTGCCCGTGAGCACCAGAGTCAGGCCTTGAGGGGGTCCTCCAGGGAGACAACAGCCCTGTCTCAAACCCAGCTTGCCAGTTCCAATGTACCAGCAGCAGGAATCTGAAGGTGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACGTGCCTCTCTCTTGCTTGCCAATGTCTAAGGTCCTCACTGCCTGCTGGAAAGAAAACACACTCCCTTGCTTAGCCCACAATTCTCCActtcacttgatccctgcccacctctccaacct-actggcttacttcctagtcctactggaggctgcgatcacactgaggaactcacaattccaaatatacgagaggctccctcttaacacggcacttaga--------------------catgtgctgttccaccttccctcatgctgttccacctcccctcAGACTATCTTTCAGCCTTCTGTCAGCAGTAAAACTTACAAATTTTTAAAAATAATTTCAATGTAGTTGCCTCTTCTTCAAATAAACATGTCTACCCTCATGG-TTTCAGTAATGTGACTCTTTTCTTGCCAAAAGTTTCCAGTGTTATCATTACTATGTCCATGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAGAGTGGAACCTGGTTTCTGTCTGGAACTCCAATTTCCTTCCAACGATGCAGCGCATAGGAGGTTGCAAGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTGTCATCTCCACGGGGACACATGTCCACACATCATCTTTCATACCATAAATACAcagtcgctcctctagatctgtggggtttacaggtgtttattaaaccaactataaatcaaaaatattcagag-aaaatat--acaaagtttcaaaa-gc--aaaactatgttgaatggacacaaatggagtggtatgtatgctttgtcaggaattataaataatctag-agatgatttcatgtatacatgagg
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47723322 1971 + 51301725 AGAGAGGAACTGCTGTGATTAGCTTCTTGTTGGTGCCTCGTCTTCCTCCAGGTATCCCCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGTCATGATCCTCTTCACcatcctcttcttctttctcctgcatCGCTGGCGCTCCAATGAAAAGG-GTAAGTCTCACGAAGCAGAGGCCACAGACCTCAGGGCCCTGTGGGGAAGCGGGATGGGAGCACGCAGGTGTGTGTTCCTCACTGGCAGGATGGTCCCCGGCCCAAGGCaggagccacagaggcagagctttcTAGAGAGAGCACCAGACACCCTGTTCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTATTCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGAAATTGAGAGCTATTTATGGGATGGGTCCTTGAACTAAGAGAGACAGAATGTCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCAGGCACCTACGGCCTCCCCCTGTGTGTTGGGCTCTGCACATGAAATGAGGACCCAGACGTGCCCTCCCAGCTGTTTTGATGACTTCCGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGTGGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTCGCCCCAGCCTCGTGGATATAGTCTTATTCCCTACTAGTCCTGAAGAAT-GTGAGC-CCCTCCCTCACTCAATATTTCCCTCTCTGCAGGACCCTGATGAACCAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTCTCACACAGGGAAAAACCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGTGTATACATAGAGCTTCCAGATGCTGAGCCCAGATTGAAAGTTG----------------ACCACAGTCAGGCCTTGAGGGGGTCCTCCAGGGAGACAACAGCCCTATCTCAAACCCAGCTTGCCAGCTCCAATGTACCAGCAGCTGGAATCTGAAGGCGCGACTCTACATCTTAGGGCGTCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGTTTTCCAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTGAGCCCACAATTCTCCATTTCACTTGacccctgcccacctctccaaCCT-ACTGGCTTACTTCCTAGTCCTACTGGAGGCTGCAGTCACACTGAGGAACTCACAATTCCAAACATACGAGAGGCTCTCTCTTAACACGGCACTTAGA--------------------CACATGCTGTTCCACCTTCCCTCATGCTGTTCCACCTCCCCCCAGACTATCTTTCAGCCTTCTGTCAGCAGTGAaacttataaatttttaaaaataatttctacgTAGTTGCCTCTTCTTCAAATAAACATGTCTACCCTTATGG-TTTCAGTAATGTGACTCTTTTCTTGCTGGAAGTTTCCGGTGTTATCATCGCTATGTCCATGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAG-GTGGAGCCTGATTCGTCTCCAGGACTCCAATTTCA-TCCAAAAATGCAGCACATAGGAGGTTCCAAGGATCGTGAATGAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACACCTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATGTCCACACATCATC-TTCATACTATAAATACACAGTCGCTCCTCCAGATCTGTGGGGTTTACAGGTGTTTGTTGAGCCAACtataaatcaaaaatattcagag-aaaatat--acaaagtttCAAAA-GC--AAAACTATGTTGAATGGACACAAATGGAGCGGTATGTATGCTGTGTCAggaattataaataatctag-agatgatttcatGTATACATGAGG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47401927 1991 + 50890351 AGAGAGGAACTGCTATGATTAGCTACTTGTTGGTGCCTCGTCTTCCTCCAGGTATCCCCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGTCATGATCCTCTTCACCATCCTCTTCTTCTTTCTCCTACATCGCTGGTGCTCCAACGAAAAGG-GTAAGTCTCACGAAGCAGAGGCCACAGACCTCCGGGCCGAGTGGGGAATCAGGATGGGAGCACGTAGGTGTGTGTTCCTCACCGGCAGGATGGTCTCTGGCCCAAGGCAGGAGCCACAGATGCAGGGCTTTCTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGGCAGAATCACTGGGATGGAAATTGAGAGCTATTCATGAGATGGGTCCTTGAACTCAGAGAGATAGAATGTCTGAGTCTGGCTGTTGGCAACTGAGGGACCTCGGGCACCTATGGCCTCCCCCTGTGTGTTGGAGTCTGAACATGAAACGAGGACCCAGAAGTGCCCTCCCAGCTGTTTTGATGACTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGGAGTGGAAAGAACAGTGAACAGGGAGGTAGGTCCTCCTCACCCCAGCCTCATGGATATAGTCTTATTCCCTAATAGTCCTGAAGAAT-GTGAGC-CTCTCCCTCACTCAACATTTCCCTCTCTCCAGGACTCTGATGAACCAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTTCCACACAGGAAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGAGTGTACATAGAGCTTCCAGATGCTGAGCCCAGATCTAAAGTTG----------------ACCACAGTCAGGCCTTGAGGGGGTCCTCCAGGGAGACAACAGCCCTGTCTCAAACCCAGCTTGCCAGTTCCAATGTACAAGCAGCAGGAATCTTAAGGCGTGACTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTTCCAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTAAGCCCACAATTCTCCActtcacttgacccctgcccacctctccaacct-actggcttacttcctagtcctactggaggctgcagtcacactgaggaactcacaattccaaacatacgagaggctccctcttaacacggcacttagactcatgctgttccaccttccctcatgctgttccaccttccctcATGCTGTTCCACCTCCCCCCAGACTATCTTTCAGCCTTCTGTCAGCAGTGAAACTTACAAATTTTTAAAAATAATTTCAATGTAGTTGCCTCTTCTTCAAATAAACATGTCTACCCTCATGA-TTTCAGTAATGTGACTCTTTTCTTGCCGGAAGTTTCCGGTGTTATCATTACTGTGTCCATGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAG-GTGGAGCCTGATTCGTCTCCAGGACTCCAATTTCA-TCCAAAAATGCAGCACATAGGAGGTTCCAAGGATCGTGAATGAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAACTGGCAGAGCCATTCCAAGATGAAACATCTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATGTCCACACATCATC-TTCATACTGTAAATACAcaggcgctcctccagacctgtgggatttacaggtgtttattaaaccaactataaatcaaaaatattcagag-aaaatat--acaaagtttcaaaa-gc--aaaactatgttgaatggacacaaatggagcagtatgtatgctgtgtcaggaattataaataatctgg-agatgatttcatgtatacatgagg
i chlSab2.chr6                    C 0 I 42633
e calJac3.chr22                   45773030 1699 + 49145316 T
e rheMac3.chr19                   60526109    0 + 64156825 C

a score=46939.000000
s hg38.chr19_GL949751v2_alt         736425 35 +  1002683 atgtgcatatgttatttgcaagcgctgtgccattt
s panTro4.chr19                   59673705 35 + 63644993 atgtgcatgggttatatccaaattctgtgtcattt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56629374 35 + 60714840 atgtgcatgggttatatccaaatgctgtgtcattt
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     9889 35 -    21488 atgtgcatgggttatatgcaattgctatgctattt
i nomLeu3.chr10_GL398297_2_random C 0 I 872
s macFas5.chr19                   55635702 35 + 59248254 gtgtgcatgggttatatgcaattgctatgccTTtt
i macFas5.chr19                   C 0 I 17115
s papAnu2.chr19                   47725293 35 + 51301725 ATATGCATGGGTTATATGCAATTGctatgcctttt
i papAnu2.chr19                   C 0 I 1228
s chlSab2.chr6                    47446551 35 + 50890351 atgagcatggattatatgccaacgctctgccattt
i chlSab2.chr6                    I 42633 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=428868.000000
s hg38.chr19_GL949751v2_alt         736460 941 +  1002683 catataagaggcttgagcatctacagattttggtatctgagtggagatctcgaaaccaatcacccacgaatagtgaaggatgaccgTATATGACTTTTATTTCTCAAATTTAAATATAAATC--AAAAAATGTAC---AACTAGATAAAAACTAAGAAGTGTTTTtata-gtgtgag-------ttagatttattttttactaggtgtaacccattggtttaatattatttattgagaagacattctatgccaccttaaaccacacggcagcctttgtcaactctaaagggactgtgtgtacatggatgtattttagaca--g-tttctgctaaggggctgtctgtgtccacacacttgatgatgctacactttatgtagccttata-gaaccctttaaatttagtagccagagccctctaatttgttattATAGGCTAtttgc--------ttttttttttcttgaggcggagtcttgctctgtcgcccaggctggactgcagtgacacaatctcagctcactgcaacctccgcctcccaggttcaagcgattctcgtgcctcagcctcttgagtagctggcgttacaggtgcctgccaccaggcatggctaatttttggatttttagcagagacacggtttcactatgttggccaggctgctctcaatcccctcatctcagttgatccgcccacctcggcttcccgacgtgct-gggGAAACTTGATTTTCTATAGCATTATGTTACTGGATATTTCTGTAAAATTTAAAATGAGGGAGGCAGAGAGACAGAGAGAGATCAAACTCCAGAGTTGGGACTCTGGAATCTTGGGTCATGAGACAAATTTTAGATTAAACTACAAAACTCCAGAATTTACAGG-TGTGGTTTTTGCTGATAAAGTACAATTCTAAGATTGTAAATAATTGCATAATCCTTCCCTGGGAATTTAAATCATTTTAACTGGT
s panTro4.chr19                   59673740 958 + 63644993 tatgtaagaggcttgaccatctgcagattttggtatctgagtggagatcctgaaaccaatcacccacgaatagtgaaggatgaccgTATATGACTTTT-TTTCTCAAATTTAAAAATAAATCATAAAAAATGTACAATAACTAGATAAAAACTAAGAAGTGTTTTtata-gtgtgagaataagtttagatttattatttcctatgtgtaaccctttggtttaatattatttattgagaagacattctatgccaccttaaaccacacggcagcctttgtcaactctaaagggactgtgtgtacatggatgtagattagacactg-tttctgctaaagggctctctgtgtccacactcttgaggatgctacactttatgtagcctcata-gaaccctttaactttagtagccagagccctctaatttgtAATTATAGGCTAtttgc-----tttttttttttttcttgaggcggagtcttgctctgtcgcccaggctggactgcagtggcgcaatctcagctcactgcaacctccacctcccaggttcaagcgattctcgtgcctcagcctcttaagtagctggcattacaggtgcctgccaccaggcatggctaatttttggatttttagcagagacacggtttcactgtgttggccaggctgctctcaatctcctcatctcagttcgtccgcccacctcggcttcccgacgtgctgggGGAAACTTGATTTTCTATAGCATTATGTTACTGGATATTTCTGTAAAATTTAAAATGAGGGAGGGAGAGAGACAGAGAGAGAGCAAACTCCAGAGTTGGGACTCTGGAATCTTGGGTCATGAGACAAATTTTAGATAAAACTACAAAAATCCAGAATTTACATG-TGTGGTTTTTGCTGATAACATACAATTCTAAGATTGTAAATAACTGCATAATCCTTCCCTGGGAGTTTAAATCATTTTAACAGGT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56629409 956 + 60714840 tatgtaagaggcttgagcatctgcagattttggtatctgagtggagatcctgaaaccaatcactcacgaatagtgaaggatgactgTATATGACTTTTATTTCTCAAATTTAAATATAAATCATAAAAAATGTACAATAACTAGATAAAAACTAAgaagtgtttttataggtgtgagaataagtgtagatttattttttcctatgtgtaaccctttggtttaatgttatttattgagaagacgttctatgccaccttagaccacacggcagcctttgtcaactataaagagactgtgtgtacaaggatgtattttagaccctg-tttctgctaaggggctctctgtgtccacactcttgaggatgctgcactttatgtagccttata-gaaccctttaaatttagtagccagagccctctaatttgttattATAGGCTATATGC---------tttttttttcttaaggtggagtcttgctctgtcacccaggctatactgcaatggcacaatctcagctcactgcaaactccgccttccaggttcaagcaattctcatgcctcagcctcttgagtagctggcattacacgtgcctgccaccaggcacggctaattcttgaatttttagcagagacacggtttcactatgttggccaggctgctctcaaactcctcatctcagttgatccgcccacctcggcttcccaacgtgctgggGGAAACTAGATTTTCTATAACATTATGTTACTGGATATTTCTGTAAAGTTTAAAATGAGGGAGGGAGAGAGACAGAGAGAGAGCAAACTCCAGAGTTGGGACTCTGGAATCTTGGGTCATGAGACAAATTTTAGATAAAACTACAAAAATCCAGAATTTACATG-TGTGGTTTTTGCTGATAAAGTACAATTCTAAGATTGTAAATAATTGCATAATCCTTCCCTGGGAACTTAAATCACTTTAACTGGT
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47446586 964 + 50890351 tatgtaagaggcttgagcacctgcagattgtggtatctgagtggagatcctgaaaccaatcacccacgaatagtgaagcacgactgTATCTAACTTTTATTTCTCAATTTTAAATATGAATCATAAAAAATTTACAACAAGAAGATAAAAAACAAGAAGTG-gtttata-gtgtgagaatacgtatagatttatttttttctatgcgtaacgcttgggccc-atgttatctatggagaagacattctattcctccttaaaccacacggcagtctttgtcaactctaacgggactgtgtgtgcacggatgtattttagacactgttttctgataaggggctctctgtgttcgctcttttgaggatgctgcacattatgtaggcttatacaaagccttaaaatttggtagctggagtcctttagtttCTTATTATAGGCTATTTGCTACGCtttttttatatttcttcaggcagagtctcgctctgttacccaggctggactgcagtggcacaatctcggctcactgcaacttccgcctcccaggttcaagcgattctcctgcctcagcctcttgagtagctggcatgacaggtgcccactgccaggcatggctaatttttgtatgtttagcagagacatggtttctctaagttggccagggaggtctcgaactcccgacctccgttgatccacccacctcggcttcccaaagtgctgggGGACACTTGATTTCCTACAGTATTATGTTACTGGATATTTCCACACAATTTAAAATgagggaggcagagagacagagagagagcgaAC-CATGTGCTGGGACTCTGGAATCTCAGGTCATGAGACAAATTGTAGATAAAATGACAAAAATCCAGAATTGACATGTTGTGGGTTTTGCTGATAAAGAACAGTTCTAAGACTGTAAATAATTGCATAATCCTTCCCTGGGTATTTAAATCATTTAAACTGGT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     9924 872 -    21488 I
e papAnu2.chr19                   47725328 1228 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=4074.000000
s hg38.chr19_GL949751v2_alt         737401 7 +  1002683 TCTGCTG
s panTro4.chr19                   59674698 7 + 63644993 TGTGCTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630365 7 + 60714840 TCTGCTG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    10796 7 -    21488 tcTGGTT
i nomLeu3.chr10_GL398297_2_random I 872 C 0
s chlSab2.chr6                    47447550 7 + 50890351 TCTGCTG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47725328 1228 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=26413.000000
s hg38.chr19_GL949751v2_alt         737408 43 +  1002683 TAATACTAGAAATACAAGCATGAAAAATTCTAATGGTTTATT-A
s panTro4.chr19                   59674705 43 + 63644993 TAATACTAGAAATACAAGCATGAACAATTCTAATGGTTTATT-A
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630372 43 + 60714840 TAATACTAGAAATACAAGCATGAAAAATTCTCATGGTTTATT-A
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    10803 41 -    21488 TAGTACTAGACACTGAAGCA-GGAAAATTAGAATGGCTT-TT-T
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47726556 41 + 51301725 TAGTACAAGAAACTCAAGCAGGAAA-ATTAGAATGACTTTTT--
i papAnu2.chr19                   I 1228 C 0
s chlSab2.chr6                    47447557 43 + 50890351 TCATACTAGAAATACAAGCATGAAACATCCTAATGGTTTATTC-
i chlSab2.chr6                    C 0 T 42374
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=385109.000000
s hg38.chr19_GL949751v2_alt         737451 347 +  1002683 GTCACAATGACTCTGAAAACCTTAATAATACCTATTAAATATTTTGCATATTACACATGAAGAAGAGTTTGAATCTCAGATAAAAACAATAAAAATACATGAAAAGTCTTTCACGTTAGCACAGATTTTAGGCATCTCGTGTTCAGGAGGTTGGATCTGAGACGTGTTTTGAGT-TGGTCATAGTGAAGGACGCTAGGTGTAAATTCTAGTGAGAACAATTTCCAGGAAGCCGTGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAACATGTAAACTGCATGGGCAGGGCGCCAAATA
s panTro4.chr19                   59674748 347 + 63644993 GTCACAATGACTCTGAAAACATTAATAATACCTATTAGATATTTTGCATATTACACAGGAAGAAGAGTTTGAATCTCAGATAAAAACAATAAAAATACGTGAAAACTCTTTCATGTTATCACAGATTTTAGGCATCTCATGTTTGGGAGGTTGGATCTGAGACATGCTTTGAGT-TGGTCATAGTGAAGGACACTAGGTGTCAATTCTAGTGAGAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAGCATGTAAACTGCATGGGCAGGGCGCCAAATA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630415 347 + 60714840 GTCACAATGACTCTGAAAACCTTAATAATACCTATTAGATATTTTGCATATTACACAGGAAGAAGAGTTTGAATCTCAGATAAAAACAATAAAAATACATGAAAAGTCTTTCACGTTAGCACAGATTTTAGGCATCTCGTGTTCGGGAGGTTGGATCCGAGACGTGTTTTGAGT-TGGTCATAGTAAAGGACGCGAGGTGTCAATTCTAGTGAGAACAATTTCCAGGAAGCCATGTTCCACTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGTGTACGTCACCCTCCCATGATGTGGTCAGCATGTAAACTGCATGGGCAGGGCGCCAAATA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    10844 345 -    21488 GTCACAATTCCTCTGATAATGCTAATAATACCTCTTAGATATCTTGCACATTACACATGAAGAAGAGTTTGAATCTCAGATAAAAAC---AAAAATACATCAAAAGTCTTTAATGTAAGCACAGAATTCAATCATCTTGTGTATGAGAGGTTGGCTCTGAGACGTCTTTTGAGTCTGGTCATAGTGAATGACGCAAGGTGGCAATCGTAGTCACAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACATCACCCTCCCATGATGTGGTCAACATGTAAACTGCATGGGCAGGGCGCCAGATA
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47726597 344 + 51301725 GTCACAATTATTCTGATAATGTTAATAATACTTGTCAGATATTTTGCATATTACACATGAAGA--AGTTTgaatctcagataaaaacaacaaaagtacaTCAAAAGTCTTTAATGT-AACCCGGAATTCAATCATCTTGTGTTCGAAAGACTGGATCTGAGACGTGTTTTGAGC-TGGTCATAGTGAATGAAGCAAGGTGGCAATTGTAGTCACAACAATTTCCAGGAAGCCATTTTCTGCTCTTGGCTGGAGGCCCGCTGGGCGTCATGCAAGGTAGAAACAGCCTGCGTATGTCACCCTCCCATGATGTGGTGAGCATGTCAACTGCATGGGCAGGGCGCCACATA
i papAnu2.chr19                   C 0 I 17831
s chlSab2.chr6                    47405226 346 + 50890351 GTCACAATTATTCTGATAATGTTAATAATACTTGTTAGATATTTTGCACATTACACATGAAGAAGAGTTTGAATCTCAGATAAAAACAACAAAAGTACATCAAAAGTCTTTAATAT-AACCCAGAATTCAATCATCTTGTGTTGGAAAGATTGGATCTGAGACGTGTTTTGAGC-TGGTCATAGTGAATGAAGCAAAGTGGCAATTGTAGTCACAACAGTTTCCAGGAAGCCATTTTCTGCTCTTGGCTGGAGGCCCGCTGGGCACCATGCAAGGTAGAAAGAGCCTGCATACGTCACCCTCCCATGATGTGGTCAGCATGTCAACTGCATGGGCAGGGCGCCACATA
i chlSab2.chr6                    T 42374 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=5595.000000
s hg38.chr19_GL949751v2_alt         737798 4 +  1002683 ACAT
s panTro4.chr19                   59675095 4 + 63644993 ACAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630762 4 + 60714840 ACAT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11189 4 -    21488 ACAT
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47744772 4 + 51301725 ACAT
i papAnu2.chr19                   I 17831 C 0
s chlSab2.chr6                    47405572 4 + 50890351 ACAT
i chlSab2.chr6                    C 0 I 42375
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=123670.000000
s hg38.chr19_GL949751v2_alt         737802 108 +  1002683 CCTGTGCGCTGCTGAGCTGAGCTGGGGCACGGCCGCCTGTCTGCACCGGCAGCA------CCATGTCGCTCACGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAA
s panTro4.chr19                   59675099 108 + 63644993 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCA------CCATGTCGCTCATGGTCATCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630766 108 + 60714840 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCTGCCTGTCTGCACCGGCAGCA------CCATGTCGCTCATGGTCGTCAGCATGGCGTATGTTGGTGAGTCCTGGAAAGGAA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11193 108 -    21488 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACAGACGGCA------CCATGTCGCTTATGGTCGTCAGTATGGCATGTGTTGGTGAGTCCTGGAAGGGAA
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47744776 114 + 51301725 CCTCTGCACCGGTCAGTCGAGCAGAGTCACTGCGTCCTGGCAGCAGAAGCTGCACCAAGTCCATGTCGCTCACGGTCGTCATCCTGGCCTGTCTTGGTGAGTCCTGGAAGGGAA
i papAnu2.chr19                   C 0 I 21
s chlSab2.chr6                    47447951 108 + 50890351 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCA------CCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAA
i chlSab2.chr6                    I 42375 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=22696.000000
s hg38.chr19_GL949751v2_alt         737910 40 +  1002683 TAGAGGAAGGGAGTGTGGGGTTGGAGATCTGGGCCCAgag
s panTro4.chr19                   59675207 40 + 63644993 TAGAGGGAGGGAGTGCGGGAATGGAGATCTGGGCCCAGAG
i panTro4.chr19                   C 0 I 27748
s ponAbe2.chr19                   56630874 40 + 60714840 TCAAGGGAGGGAGTGCGGGGATCGAGATCTGGGCCCAGAG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11301 40 -    21488 TCGACGGAGGGAGTGCGGGGATGGGGATCTCATCCTGGAG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47448059 38 + 50890351 TCGACAGAGGAAGCGCTGGGGTGGAGATCTGGGCCTGG--
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=17093.000000
s hg38.chr19_GL949751v2_alt         737950 21 +  1002683 gtggagatataggcctggagg
s panTro4.chr19                   59702995 21 + 63644993 GTGGAGATATGGGTCTGGAGG
i panTro4.chr19                   I 27748 C 0
s ponAbe2.chr19                   56630914 21 + 60714840 GTGGAGATATAGGCCTGGAGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11341 21 -    21488 GTAAAGATATGGGCCTGGAGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47448097 21 + 50890351 GTGGAGATCTGGGCCTGGAGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=7341.000000
s hg38.chr19_GL949751v2_alt         737971 18 +  1002683 tggagttgtgggcctgga
s panTro4.chr19                   59703016 18 + 63644993 TGGAGTTATGGGCCTGGA
i panTro4.chr19                   C 0 T 27787
s ponAbe2.chr19                   56630935 18 + 60714840 TGGACTGATGGGCCTGGA
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47448118 17 + 50890351 -GGAGATATGGGCCTGGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362  0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=10083.000000
s hg38.chr19_GL949751v2_alt         737989 18 +  1002683 gtggagATCTGGGCCTGG
s panTro4.chr19                   59675247 18 + 63644993 GTGGAGATCTGGGCCTGG
i panTro4.chr19                   T 27787 C 0
s ponAbe2.chr19                   56630953 18 + 60714840 GTGGAGATCTAGGCCTGG
i ponAbe2.chr19                   C 0 T 28006
s chlSab2.chr6                    47448135 18 + 50890351 GTGGAGATCTGGGCCTGG
i chlSab2.chr6                    C 0 T 58388
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362  0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=91.000000
s hg38.chr19_GL949751v2_alt         738007 1 +  1002683 A
s panTro4.chr19                   59675265 1 + 63644993 A
i panTro4.chr19                   C 0 C 0
e ponAbe2.chr19                   56630971 28006 + 60714840 T
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362 0 -    21488 C
e chlSab2.chr6                    47448153 58388 + 50890351 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=300.000000
s hg38.chr19_GL949751v2_alt         738008 1 +  1002683 G
s panTro4.chr19                   59675266 1 + 63644993 G
i panTro4.chr19                   C 0 C 0
s chlSab2.chr6                    47389765 1 + 50890351 G
i chlSab2.chr6                    T 58388 C 0
e ponAbe2.chr19                   56630971 28006 + 60714840 T
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362 0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=12966.000000
s hg38.chr19_GL949751v2_alt         738009 38 +  1002683 TGGATATATGGGCCTAGAGATGGAGTGATGGGCCTAGA
s panTro4.chr19                   59675267 38 + 63644993 TGGATTTATGGGCCTAGAGATGGAGTGATGGGCCTAGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56602965 36 + 60714840 TGGAGATATGATCCTGGAG-TGGAGGTATGGGCCTGG-
i ponAbe2.chr19                   T 28006 I 27970
s chlSab2.chr6                    47389766 38 + 50890351 TGGAGATATGGGTCTAGAGGTGGAGATATGGGCCTAGA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362  0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=780.000000
s hg38.chr19_GL949751v2_alt         738047 2 +  1002683 AG
s panTro4.chr19                   59675305 2 + 63644993 AG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630971 2 + 60714840 AG
i ponAbe2.chr19                   I 27970 C 0
s chlSab2.chr6                    47389804 2 + 50890351 GG
i chlSab2.chr6                    C 0 I 79899
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362 0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=4512.000000
s hg38.chr19_GL949751v2_alt         738049 31 +  1002683 tggagatctgggcctggagtgccgataggaa
s panTro4.chr19                   59675307 31 + 63644993 TGGATATCTGGGCCTGGAGTGGAGATAGGAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56630973 20 + 60714840 TGGAGATCTGGGCCTGGAGT-----------
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362  0 -    21488 C
e chlSab2.chr6                    47389806 79899 + 50890351 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=11668.000000
s hg38.chr19_GL949751v2_alt         738080 35 +  1002683 cctggaggggagataggagcctggagtggagatat
s panTro4.chr19                   59675338 35 + 63644993 TCTGGAAGGGAGATAGGAGCCTGGACTGGAGATAT
i panTro4.chr19                   C 0 I 117
s ponAbe2.chr19                   56630993 27 + 60714840 --------GGACATCTGGGCCTGGAGTGGAGATCT
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47469705 35 + 50890351 CCTGGAGGGGAGATATGGTCCTGGGGTGGAGATAT
i chlSab2.chr6                    I 79899 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362  0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=61998.000000
s hg38.chr19_GL949751v2_alt         738115 145 +  1002683 gggcctggaggtggagTTATAGGCCTATAGTAGAGATATGGGCCTGGAG-TGGAGATTTGGGCCAGGAG-TGGAGATATGGGCCTAGAGGTGGATATCTGGGCCTAGAGTGGAAATATGGGCCTAGGATGGAGATATGGGCCTGGTT
s panTro4.chr19                   59675490 145 + 63644993 GGGCCTGGAG-TGGAGACATGGGCCTGGAGTGGAGATATGGGCCTGGAG-TGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTAGAGGTGGATATCTGGGCCTGGAGTGGAGATATGGGCCTAGGATGGAGATATGGGCCTGGGT
i panTro4.chr19                   I 117 C 0
s ponAbe2.chr19                   56631020 144 + 60714840 GGGCCTGGAG-TAGAGTTACGGGCCTGCAGTAGAGATATGGGCCTGGAG-CGCAGATATGGGCCAGGAG-TGGAGATGTGGGTCTAGAGGTGGATATCTGGGCCTGGAGTGGAGATATGGGCCTAGGATGGAGATATGGGTCTGGCT
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47469740 145 + 50890351 GGGCTTGGAG-TGGAGATATGGGCCTAGAGTGTAGATATGGGCCTGGAACTGTAGATATGGGCCTGGAG-TGAAGATATGAGCCTGGAACTGTAGATATGGGCCTGGAGTGGAGATATGGGCCTGGGGTGGAGATATGGGCCTGGAG
i chlSab2.chr6                    C 0 T 21636
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362   0 -    21488 C
e papAnu2.chr19                   47744890  21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=9402.000000
s hg38.chr19_GL949751v2_alt         738260 21 +  1002683 GTGGAGATATGGGACTGGAGA
s panTro4.chr19                   59675635 21 + 63644993 GTGGAGATATGGGACTGGAGT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56631164 21 + 60714840 GGGGAGATAtgggactggagt
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47448249 21 + 50890351 GTGGAGATACGGGTCTAGAGT
i chlSab2.chr6                    T 21636 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11362  0 -    21488 C
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=40178.000000
s hg38.chr19_GL949751v2_alt         738281 55 +  1002683 GGAGATATGGGCCTAGAGTGGAGATATGGGCTTGGGGTGGAGATCTGGGCCTGGG
s panTro4.chr19                   59675656 55 + 63644993 GGAGATATGGGCCTGGAGTGGAGATATGGGCTTGGGGTGGATATCTGGGCCTGGG
i panTro4.chr19                   C 0 I 27727
s ponAbe2.chr19                   56631185 55 + 60714840 ggagatatgggcctgaagtggagatatgggcttggagtggagatctgggcctggg
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11362 54 -    21488 GGAGATCTGGGTCTGATGTGGAGATATGGGACTGGAGT-GAGTTCTGGGCCTGAA
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47448270 55 + 50890351 GGAGATATGGGCCTGGAGTGGAGATATGGGTTTGGTGTGGAGATATGGGCCTAGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=9116.000000
s hg38.chr19_GL949751v2_alt         738336 11 +  1002683 GTGGAGATATG
s panTro4.chr19                   59703438 11 + 63644993 gtggagatatg
i panTro4.chr19                   I 27727 C 0
s ponAbe2.chr19                   56631240 11 + 60714840 gtggagatatg
i ponAbe2.chr19                   C 0 I 16584
s nomLeu3.chr10_GL398297_2_random    11416 11 -    21488 GTGGAGATGTG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47448325 11 + 50890351 GTTGAGATATG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=1000.000000
s hg38.chr19_GL949751v2_alt         738347 1 +  1002683 G
s panTro4.chr19                   59703449 1 + 63644993 g
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647835 1 + 60714840 G
i ponAbe2.chr19                   I 16584 C 0
s nomLeu3.chr10_GL398297_2_random    11427 1 -    21488 G
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47448336 1 + 50890351 G
i chlSab2.chr6                    C 0 I 21637
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=1808.000000
s hg38.chr19_GL949751v2_alt         738348 13 +  1002683 GCCTGGAG------------------GTGGA
s panTro4.chr19                   59703450 31 + 63644993 gccgggagtggagatatgggcgtcgggtgga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647836 13 + 60714840 GCCTAGAG------------------GTGGA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11428 13 -    21488 GACAGGAA------------------GTGTT
i nomLeu3.chr10_GL398297_2_random C 0 T 103
s chlSab2.chr6                    47469974 12 + 50890351 GCCTGGG-------------------GTGGA
i chlSab2.chr6                    I 21637 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=4710.000000
s hg38.chr19_GL949751v2_alt         738361 30 +  1002683 GTTACGGGCCTTCAGTAGAGATATGGGC-------------------CT
s panTro4.chr19                   59703481 49 + 63644993 gatatgggCCGGGAGTGGAGATATGGGCATCGGGTGGAGATATGGGACT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647849 30 + 60714840 GTTACAGGCCTGCAGTAGAGATATGGGC-------------------CT
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47469986 11 + 50890351 -------------------GATATGGGC-------------------CT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11441 103 -    21488 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=1476.000000
s hg38.chr19_GL949751v2_alt         738391 2 +  1002683 GG
s panTro4.chr19                   59703530 2 + 63644993 GG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647879 2 + 60714840 GG
i ponAbe2.chr19                   C 0 I 1
s nomLeu3.chr10_GL398297_2_random    11338 2 -    21488 GA
i nomLeu3.chr10_GL398297_2_random T 103 C 0
s chlSab2.chr6                    47469997 2 + 50890351 GG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=8917.000000
s hg38.chr19_GL949751v2_alt         738393 19 +  1002683 GGTGGAGATATGGGCTTGG
s panTro4.chr19                   59703532 19 + 63644993 AGTGGAGATATGGGCCTAG
i panTro4.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11340 19 -    21488 GGTAAAGATATGGGCCTGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47469999 19 + 50890351 AGTGGAGATATGGGCCTGG
i chlSab2.chr6                    C 0 C 0
e ponAbe2.chr19                   56647881  1 + 60714840 I
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=20630.000000
s hg38.chr19_GL949751v2_alt         738412 29 +  1002683 GGTGGAGATCTGGGCCTGGAGTGGAGATA
s panTro4.chr19                   59703551 29 + 63644993 GATGGGGATATGGGCCTGGAATGGAGATA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647882 29 + 60714840 GGTGGAGATCTGTGCCTGGAGTGGAGATA
i ponAbe2.chr19                   I 1 C 0
s nomLeu3.chr10_GL398297_2_random    11359 29 -    21488 AGGGGAGATCTGGGTCTGATGTGGAGATA
i nomLeu3.chr10_GL398297_2_random C 0 I 53
s chlSab2.chr6                    47470018 29 + 50890351 GGTGGAGATATGGGCCTGGGGTGGAGATA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=1746.000000
s hg38.chr19_GL949751v2_alt         738441 3 +  1002683 TGG
s panTro4.chr19                   59703580 3 + 63644993 TGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647911 3 + 60714840 TGG
i ponAbe2.chr19                   C 0 I 37748
s chlSab2.chr6                    47470047 3 + 50890351 TGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=3716.000000
s hg38.chr19_GL949751v2_alt         738444 27 +  1002683 GCCTGGAGGTGGAGTTACTGGCCTTCA
s panTro4.chr19                   59703583 27 + 63644993 GCCTGGGTGTGTAGATATTGGACTGGA
i panTro4.chr19                   C 0 C 0
s chlSab2.chr6                    47470050 27 + 50890351 GCCTGGAACTGTAGATATGGGCCTGGA
i chlSab2.chr6                    C 0 I 59
e ponAbe2.chr19                   56647914 37748 + 60714840 I
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=25985.000000
s hg38.chr19_GL949751v2_alt         738471 69 +  1002683 GTAGAGATATGGGCCTGGTGTGGAGATATGGGCCTGGAT-TGGAGATATGGGCCTAGGTTGGAGATCTGA
s panTro4.chr19                   59703610 69 + 63644993 GTGGAGATATGGGCCTGATGTGGAGATACGGGCTTGGAG-GGGAGATATGATCCTGGAGTGTAGTTATGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685662 69 + 60714840 GTGGAGTTATGGGCCTGAAGTGGAGATCTGGGCCTGGAG-TGGAGATATGATCCTGGAGTGGAGATATGG
i ponAbe2.chr19                   I 37748 T 37817
s chlSab2.chr6                    47470136 70 + 50890351 GTGGAGATATGGGCCTAGAGTGTAGATATGGGCCTGGAACTGTAGATATGGGCCTGGAGTGAAGATATGA
i chlSab2.chr6                    I 59 T 21869
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=4092.000000
s hg38.chr19_GL949751v2_alt         738540 7 +  1002683 GCCTGGA
s panTro4.chr19                   59703679 7 + 63644993 GCCTGGA
i panTro4.chr19                   C 0 T 27975
s ponAbe2.chr19                   56647914 7 + 60714840 GCCTGGA
i ponAbe2.chr19                   T 37817 T 37351
s chlSab2.chr6                    47448337 7 + 50890351 GCCTGGA
i chlSab2.chr6                    T 21869 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=20754.000000
s hg38.chr19_GL949751v2_alt         738547 46 +  1002683 GTGGAGATATGGGCCTGGATTGGAGATATGGGCTTACAGTGGAGAT
s panTro4.chr19                   59675711 46 + 63644993 TTGGAGATAAGGGCCTGGATTGGAGATATGGGCCTAGGGTGGAGAT
i panTro4.chr19                   T 27975 C 0
s ponAbe2.chr19                   56610570 46 + 60714840 GTGGAGATATGGGCCTGGATTGGAGATATGGGCCTAAGGTGGAGAT
i ponAbe2.chr19                   T 37351 C 0
s chlSab2.chr6                    47448344 46 + 50890351 GTGGAGATATTAGCCTGGATTGGAGATAAGGGTTTGGAGTGGAGAT
i chlSab2.chr6                    C 0 I 21862
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=10407.000000
s hg38.chr19_GL949751v2_alt         738593 48 +  1002683 CTTGGCCTGGATTGGCGATATGGGCCTGGATTGGCGATATGGGCCTAT
s panTro4.chr19                   59675757 48 + 63644993 CTGAGCCTGGATTGGAGATACGGGCGTAGATTGGCGATATGGGCTTAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56610616 48 + 60714840 CTGTGCCTGGATTGGAGATCCGGGCCTGGATTGGCGATATGGGCCTAG
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e chlSab2.chr6                    47448390 21862 + 50890351 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=22484.000000
s hg38.chr19_GL949751v2_alt         738641 48 +  1002683 GATGGAAATATCGGCCTGGAGTGGAGATATGGGCCTGGAG-TGGAGATA
s panTro4.chr19                   59675805 48 + 63644993 GGTGGAAATATAGGCCTGGAGTGGAGATATGGGCCTGGAG-TGGAGATA
i panTro4.chr19                   C 0 I 27976
s ponAbe2.chr19                   56610664 48 + 60714840 GGTGGAAATATCGGCCTGGAGTGGAGATATGGGCCTGGAG-TGGAGATA
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47470252 49 + 50890351 GGTGGAGATATGGGCCTAGAGTGTAGATATGGGCCTGGAACTGTAGATA
i chlSab2.chr6                    I 21862 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=387.000000
s hg38.chr19_GL949751v2_alt         738689 2 +  1002683 CA
s panTro4.chr19                   59703829 2 + 63644993 tg
i panTro4.chr19                   I 27976 C 0
s ponAbe2.chr19                   56610712 2 + 60714840 TG
i ponAbe2.chr19                   C 0 I 20537
s chlSab2.chr6                    47470301 2 + 50890351 TG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=14689.000000
s hg38.chr19_GL949751v2_alt         738691 44 +  1002683 GGCCTAGGGTGGAAATATTGGCCTGGA--------------------------------------GTGGAGATATGGGCTTG
s panTro4.chr19                   59703831 82 + 63644993 ggcctagggtggagatctgagcctggattggagatgtgggcccggattggCTATATGGGTCTAGGGTGGAAATATCGGCCTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56631251 44 + 60714840 ggcctagggtggaaatatcggcctgga--------------------------------------gtggagatatgggcctg
i ponAbe2.chr19                   I 20537 C 0
s chlSab2.chr6                    47470303 45 + 50890351 GGCCTGGAGTGAAGATATGAGCCTGGA-------------------------------------GGTGGAGATATGGGCTTG
i chlSab2.chr6                    C 0 T 21874
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=2222.000000
s hg38.chr19_GL949751v2_alt         738735 11 +  1002683 TGGTGGGGATA
s panTro4.chr19                   59703913 11 + 63644993 GAGTGGAGATA
i panTro4.chr19                   C 0 T 28071
s ponAbe2.chr19                   56631295 11 + 60714840 gagtggagata
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e chlSab2.chr6                    47470348 21874 + 50890351 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=2319.000000
s hg38.chr19_GL949751v2_alt         738746 8 +  1002683 TGGGCTTG
s panTro4.chr19                   59675853 8 + 63644993 TGGGCTTG
i panTro4.chr19                   T 28071 C 0
s ponAbe2.chr19                   56631306 8 + 60714840 tgggcttg
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e chlSab2.chr6                    47470348 21874 + 50890351 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=1310.000000
s hg38.chr19_GL949751v2_alt         738754 7 +  1002683 TGGTGGG
s panTro4.chr19                   59675861 7 + 63644993 GGGCGGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56631314 7 + 60714840 ggatggg
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47448474 7 + 50890351 CGGTGCA
i chlSab2.chr6                    T 21874 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    11388 53 -    21488 I
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=3437.000000
s hg38.chr19_GL949751v2_alt         738761 5 +  1002683 GATCT
s panTro4.chr19                   59675868 5 + 63644993 GATAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56631321 5 + 60714840 gatat
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11441 5 -    21488 GATCT
i nomLeu3.chr10_GL398297_2_random I 53 C 0
s chlSab2.chr6                    47448481 5 + 50890351 GATCT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e papAnu2.chr19                   47744890 21 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=384162.000000
s hg38.chr19_GL949751v2_alt         738766 456 +  1002683 GGGCTTGGAGGCT--GGGTCTCTGCACAGCCGACAGCCCTGTTCTTGGGTGCAGGTAGGCACTGAGGGTGAGTTTAACTTCAGTCCAGGAAGGGCCTGCCTACCAAGACTCACAGCCCAGTGAGGGCAGCAAGGGAGG-GCTGGTTTGCCTGC-----AG--ATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGTGAGTCCTTCTCCAAACCTTAGGGTGTCATC-TCCCCACA----TAAGAGGATTTTCCTGAAACAGGA-------------------------------------GGGAAGTCCTGTCAGGGAGCCTCTCATAAACTAGGAAGAGGGGACCCTGGGGTGCTCGGCCCACAGTTCCGACCTCG-CCTCCCTGGCCTTTCATTCCCTTGGCAGAGTCAAGTTCTGTGGGGACCAG---GGTTAGACTGGGGTGCTCAAAGCTGGGGTGC-------------------------GTGG-TGGGGAAGTGG
s panTro4.chr19                   59675873 456 + 63644993 GGACCTGGAGGCT--GGGTCTCTGCACAGCCGACAGCCCTGTTCTTGGGTGCAGGTAGGCACTGAGGGTGAGTTTACCTTCGGCCCTGCAGAGGCCTGGCTGCCAAGACTCACAGCCCAGTGGGGGCAGCAAGGGAGG-CCTGGTTTGCCTAC-----AG--ATGGATCATCCATTATGATCTTTCTTTCCAGGGTTCTTCTTGATGCAGGGGGCCTGGCCACACATGGGTGAGTCCTTCTCCGAACCTTAGGGTGTCATC-TCCCCACA----TAAGAGGATTTTCCTGAAACCGGA-------------------------------------GGGAAGTCCTGTCAGGGAGTCTCTCATAAACTAGGAAGAAGGGACCCTCGGATGCTCCGCCCACAGTTCTGACCTCG-CCTCCCTGGCCTTTCATTCCCTTGGCAGAGTCAAGTCCTGTGGGGACCAG---GGTTACACTAGGGTGCTCAAAGCTGGGGTGT-------------------------GTGG-TGGGGAAGTGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56631326 453 + 60714840 ggacctggaggct--gggTCTCTGCACAGCCAACAGCCGTGTTCTTCGGTGCAGGTAGGCAGTGAGGGTGAGTTTACCTTCAGCCCAGCAAGGGCCTAGCTGCCAAGACTCACAGCCCAGTGGGAGCAGCAAGGGAGG-CCTGATTTGCCTGC-----AG--ATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGTGAGTC---CTCCAAACCTTAGGGTGTCATC-TCCCCACA----GAACAGGATTTCCCCTAAATGGGA-------------------------------------GGGAAGTCCTGTCGGGGATTCTCTCATAAACTAGGAAGAGGGGACCCTGGGCTGCTCGGCCCACAGTTCTGACCTCG-CCTCCCTGACCTTTCATTCCCTTGGCAGAGTCAGGTTCTCTGGGGACCAG---GGTTAGACTGGGGTGCTCAAAGCTGGGGTGT-------------------------GTGG-TGGGGAAGTGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11446 464 -    21488 GGGCCTGGAGCCT--GGGTCTCTGCACAGCCGAGAGCCCTGTTCTTGGCAGCAGGTAGGCAGCGAGGCTAAGTTTACCTTCAGCCCAGCAAGGGCCTGGCTGCCAAGACACACAGCCCAGTCGGGGCAGC-AGGGTGC-CCTGCTTTGCGTGCGGATGGG--ATGGATCCTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGCGGCCTGGCCACATGAGGGTGAGTCCTTCTCCAAACCTTAGGGTGTCATC-TCCCCACA----TAAGAGGATTTTCCTGAAACAGGA-------------------------------------GGGAAGCCCAGTGGGGGATTTTCTTATGAACAAGGATGAGGAGACCTGGGGGCGCTCAGCCCACAGTTCTGACCTTGCCCTCCCCAGCCTTCCTTTCCCTTGGCTGGGTCAGGTTTTGTGGGAACCCGGGAGGGTAGACTGGGGTCCCCCAAGCTGGGCTGT-------------------------GCGG-GGGGGATGTGG
i nomLeu3.chr10_GL398297_2_random C 0 I 33
s papAnu2.chr19                   47744911 496 + 51301725 GGGCCTGCAGATTCGGGGTCTCC---CAACGGGGAGCCGTGTT--CTGGAGCAAGCGGGTGGTGAGGCTGAGTGAACGTTCAGCCCAGCGAGG-------CGCCCAATGGC---------TGGGAGGAA-AGGGCAGG-------TTG-CTGC-----AGACATGAATAGTTCATCATGATCTTTCTTTGCAGGGTTCTTCTTGGACCAGAGGGTGTGGGCACACGTGGGTGAGTCCTTCCCAAA----TGATGGGTTGCCATCCCCACCGATACAAGTGAATTTTCCTGAGAAGGGAGGCAGGCAGCACAGAGGGTGGCTGATGGACTGACCGTGGGAAAGCCTGTGGGGAAATCTCTCGTGAACTAGGAAGAGGAGACCCTGGGATGCTCGGCCCTGAGTTCTGTCTTATCCCTCCCCAGCCGTTCTTCCCTGTGGCTGAGCCTAGCTCTGTGTGGCCCAG---GGAGAGACTTGGGCGCTCAAAGCTGGGGTGTCGGGGGATGGGATATGGTGTCACtggcagaggagggaaggg
i papAnu2.chr19                   I 21 I 9
s chlSab2.chr6                    47448486 457 + 50890351 GGATCCGGAGGCT--GGGTCTCTGCACAGCTGACATCCCTGCT-GCGGGGGCAGGTAGGCAGCCAGGGTGAGTTTACTTTCAGCCCAAAAAGGGCCTGGCTGCCCAGACGCACAGCCCCGTGGGGGCAGCAGGGGAGGCCCTGGTTTGCCTGC-----AG--ATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGGTCCAGAGGGCCTGTCCACACACGGGTGAGTCCTTCCCCAAACCTTAGGGGGTCATC-TCCCCACC----TAAGAGGATTTTCCTGAAACAGGA-------------------------------------GGGAAGTCCTGTCAGAGAGTCTCTCATACAATAAGAAGGGGGGACCCTGGGGTGCTCGGCTCACACTTCCGACCTCGTCCTCTCTGGCCTTTCTTACCCTTGGCTGAGTCAAGCTCTGTGAAGACCGG---GGTGAGCTTGGGGTGCTCCAAGCTGAGGTGT-------------------------GCAG-GGAGGAAGTGG
i chlSab2.chr6                    C 0 T 24470
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=239143.000000
s hg38.chr19_GL949751v2_alt         739222 222 +  1002683 TAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACT--CACACTTCAGCGTTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCACTCCACCAGAAGAGGT-GGGAAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGCTTATTTTCATTCAGGCATCTGCTGATATTCCATTCTCAAA-GACATGCCCTCCACCCCATGTCT
s panTro4.chr19                   59676329 224 + 63644993 TAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCGTTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCACTGCACCAGAAGAGGT-GGGAAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGCTTATTTTCATTCAGGAATCCACTGATA-TCCATTCACAAAGGACATGCCCTCCACCCCATGTCT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56631779 225 + 60714840 TAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCATTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGT-GGGAAACCACAGCCATGGCCGTGACATTCCAAATCCTCTGACGGGGGCTCCATTGTTTATTTTTGTTCAGGCATCCACTGATATTCCATTCACAAAGGACATGCCCTCCACCCCATGTCT
i ponAbe2.chr19                   C 0 I 210
s nomLeu3.chr10_GL398297_2_random    11943 224 -    21488 TAGGAACAGCAGG-CCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGCGTTTCCGTGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCTAAGAGGTG-GGGGAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGTGTATTGTGGTTCACGCATTGGCTGATATTCCATTCACAAAGGACATGCCCTCGACTCCATGTCT
i nomLeu3.chr10_GL398297_2_random I 33 C 0
s papAnu2.chr19                   47745416 225 + 51301725 TAGGAACAGCAGGTCCTCTGAGGACAAGAGGGTAAATCACTCTCTCCAGTGTTTCCATGATGGTCGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGGGAACCACAGTCACGACCCTGACATTCCAATCCCTCTGAT-GGGGCTCAGTTGTTCATTATGGTTCAGGCATTAGCTGATATTCCATCCACAAAGGTCGTACCCTCAGCTGCATGTCT
i papAnu2.chr19                   I 9 C 0
s chlSab2.chr6                    47424473 225 + 50890351 TAGGAACAGCAGGTCCTCTGAGGACAAGAGGGTAAATCACTCCCTCCAGTGTTTCCATGATGGTCGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGGGAACCACAGTCATGACCCTGACATTCTAATCCCTCTGAT-GGGGCTCAGTTGTTTATTATGGTTCAGGCATTAGCTGATATTCCATTCACAAAGGTCGTACCCTCTGCCGCGTGTCT
i chlSab2.chr6                    T 24470 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=269662.000000
s hg38.chr19_GL949751v2_alt         739444 245 +  1002683 ACCCTGTGTTGTTTTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTACTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTGTTGTAGGGAGACACCTTGTGTTTGCGGGATGGGTCCTTCCTTTAGCCCTGGGCACCAAGGTGTGATAGCAGCCATAGAAACTTGGAAAGCGAGGAGAATCTTCAGAGCACAGGGAGGGAGGGGTGGCTCCACATCCTCCTCTCTAAGGC
s panTro4.chr19                   59676553 245 + 63644993 ACCTTGTGTTCTTTTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTACTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTGTTGTAGGGAGACACCATGTCTTTGTGGGATGCGTCCTTCCTTTAGCCCTGGGCACCAAGGTGTGATAGCAGCCACAGAAACGTGGAAAGCGAGGAGAATCTTCAGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56632214 245 + 60714840 ACCTTGTGTTGTTGTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTACTCAGCACCTGCTCAAAGTTCTCAGCTGATACTTTTGTTGTAGGGAGACACCATGTCTTTGCGGGATGGGTCCTTCCTTTAGCCCTGGCCACCAAGGTGTGATAACAGCCATAGAAACGTGGAAAGTGAGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCAGCTCCACATCCTCCTCTCTAAGGC
i ponAbe2.chr19                   I 210 C 0
s nomLeu3.chr10_GL398297_2_random    12167 242 -    21488 -ATTTGTGTTGTTTTCTGTGAGTAATCTTGCAGTATTCAAATCTAGTAAGAGTCGCTTATTCAGCACTTGCTCAAAGTTCTCAGCTGACAC--TTGTTGTAGGGAGGCGCCAAGTCTATCCCAGGTGGGTCCTTCCTGTAGCCCTGGCCACCCAGGTGTGGTAGGGGCCTTAGAAAGGTGGAAAGTGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCTTCTCTAAGGC
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47745641 244 + 51301725 ACTTTGTGTTGTTTGGTGTAACCAATCTTGCAGTATTAAAATCTAGTAAGGGTTCCGTACTCAGCACCTGCTCAGAGTTTTCAGCCCATACTTTTGTTGTAGGGAGACGCCATGTCTATGTGGGATGGGTTCTTCCTGTAGCCCTGGACACCCAGGTGTGGTAGGAGTCTTAGAAAGATGGAAAG-GGGAAGAATCTTCTAAGCACATGGAGGGAGGGGCGACTCCACATCCTCCTCTCTAAGGC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47424698 244 + 50890351 ACTTTGTGTTGTTTGGTGTAACCAATCTTGCAGTATTAAAATCTAGTAAGCGTTCCGTACTCAACACCTGCTCAGAGTTTTCAGCCCATACTTTTGTTGTAGGGAGACGCCATGTCCATGCTGGATAGGTTCTTCCTGTAGCCCTGGACACCCAGGTGTGGTAGGAGCCTTAGAAACATGGAAAG-GGGAAGAATCTTCTGAGCACACGGAGGGAGGGGCGACTCCACATCCTCCTCTCTAAGGC
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1699 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=131032.000000
s hg38.chr19_GL949751v2_alt         739689 94 +  1002683 GGTGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCTCTGTGGTGCCTCC---AGGACATGTGATTCTTCGGTGT
s panTro4.chr19                   59676798 94 + 63644993 AGTGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCCCTGTGGTGCCCCC---AGGACATGTGATTCTTCGGTGT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56632459 94 + 60714840 GGCACCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCCAGCCTTCTGGTGCCTCC---AGGACATGTGATTCTTCGGTGT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    12409 94 -    21488 AGTGCCTCCTTCTCCCCAAGGTGGTGAGGTCAAGCCCTTGCTGTCTGCCTCGCCCAGCACTGTGGTGCCTCC---AGGACATGTGACTCTTTGGTGT
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47745885 97 + 51301725 GGCACCTCCTTCTCCCCCAGGTGGTCAGGACAAACCCTTCTGCTCTGCCTGGCCCAGCGCTGTGGTGCCTCAGGGAGGACACGTGACTCTTTGGTGT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47424942 97 + 50890351 GGCACCTCCTTCTCCCCCAGGTGGTCAGGACAAGCCCTTCTGCTCTGCCTGGCCCAGCCCTGTGGTGCCTCAGGGAGGACACGTGACTCTTTGGTGT
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                    3664588 97 - 49145316 GGTGCTTCCTTCTCTCCTAGGAGTCTACAGCAAACCCACCCTCTTAGCCCTGCCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCCAGTGT
i calJac3.chr22                   n 1699 n 1699
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=997067.000000
s hg38.chr19_GL949751v2_alt         739783 852 +  1002683 CATTCTTATCTTGGGTTTAACAACTTCAGTCTGTAAAAGGAAGATGGGGTGCCTGGCACTGAGCTCTACAACAGAATATTCTGGAAGAGCCTTTTCATGGGCCCTGTGACCCCAGCACACACAGGGACGTACAGATGTCGGGGTTCACACCCACACTACCCCAGTGGGTGGTCGGCACCCAGCAACACCCTGGTGATCATGGCCACAGGTCAGAGGGCTCCTGTCTTGGATTCTCCT-TTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGCGTGTCCTTGAGGGTCCCATCACCCAGGCCCTGACTATATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattctaatccctggagtctgtgactatttatgttataggggaaggaactgaaggggaagatggagctcaggttgttgatgagttgaccttgagatggggagacagcctggactgtcccgctgggctcagtgtaatcacaagggtccac-atgaaaggaggaggaagaggggagtggggattagagcagcgcaatgggagactccacca----------gctttgaaggtggaggaaggccaggagccatgaatgcaggtggcctgtagaggttggaaaagtcaa-ggaaatgattct--ccagagtctccagagggaacgaagccctgcagatgccttgattttagcccaggaaaaacagggtcctatttctg-tctccagtagtgaaatgggtcagtgtgctctctcctgctgccatgcttctgataattttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAG
s panTro4.chr19                   59676892 839 + 63644993 CACTCTTATCTTGGGTTTAACAACTTCAGTGTGTACAAGGAAGATGGGGTGCCTGTCCCTGAGCTTTACAACAGAATATTCTGGAAGAGCCTTTTCATGGGCCCTGTGACCCAAGCACAGGCAGGGACCTACAGATGCCGGGGTTCACACCCACACTCCCCCAGTGGGTGGTCGGCACCCAGCAACCCCCTGGTGATCGTGGTCACAGGTCAGAGGGCTCCTGTCTGGGATTCTCCTGGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGCGTGTCCTTGA--------------AGGCCCTGAGTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtgctgggaagaataattgtccccagtgatgactgcattctaatccctggagtctgtgactatttatgttacaggggaagggactgaaggggaagatggagctcaggttgttgatgagttgaccttgagatggggagatggcctggactgtcccagtgggctcagtgtagtcacaagggtccac-atgaaaggaggaggaagatgagagtggggattagagcagcataatgggagtctccatca----------gctttgaaggtggaggaaggccatgagccatgaatgcaggtggcctatagaggctggaaaagtcaa-ggaactgattct--cctgagtctccagagggaacgaagccctacagatgccttgattttagcccacgaaaaacagggtcccatttctg-tctccagaattggaaggggtcagtgtgctctctcctgctgtcatgcttctgataattttctacagcaacaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56632553 854 + 60714840 CATTCTTATCTTAGGTTTAACAACTTCAGTCTGTACAAGGAAGATGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGCCTTTTCATGGGCTCTGTGACCCCAGCACATGCAGGGACCTATAGACGCTGGTGTTCACACCCACACTCCCCCAGTGGGTGGTCAGCATCCAGCAACCCCCTGGTCATCATGGTCACAGTTCACAGGGCTCCTGTCTGGCATTCTCTTTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGCGTGTCCTTGAGGGTCCCATCACCCAGGCCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccaatgatgactacattctaatccctggagtctgtgactatttatgttataggggaagggactgaaggggaagatagagctcaggttgttgatgagttgaccttgagatggggagacagcttggaatgtcccggtgggctcagtgtaatcacaagggtctacaacgaaaggaggaggaagaggggagtggggattagagcagcgtaatgagagtctccctca----------gctttggaggtggaggaaggccgtgagccacgaatgcaggtggcctatagaggctggaaaagtcaa-ggaactgattct--cctgagtctccagagggaatgaagccctgcaggtgccttgatttcactccaggaaaaacagggtccgatttctc-tctctagaattggaaggagtcaatgtgctctcttctgctgccattcttctgataattttctagagcagcaacaggaaaccaacacTGGAACCCAGATCAAGGACAAG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    12503 853 -    21488 CATTCTTATCTTGGGTTTAACAACTTCAGTCTGTACAAGGAAGACGGGGTGCCTGTCCCTGAGCTCTACAACTGAATATTCTGGAACAGCCTTTTAATGGGCCCTGTGACCCCAGCACACGCAGGGACCTACAGATGTTGGGGTTCACACCCACACTCCCCCACTGTGTGGTCTGCACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTCTGGGATTCTCCTTGTCCCACCTCCTAAGTCCCAGAGCTCCTGGTGGGCGTGTCCTTGAGGGTCCCATCACGCAGGCCCTGACTGTATTTGGGGGAAAGGGGCATTGAATACAGGGAAAGAGGTGCtgtggtgggaagaataattgtccccaatgatgactacattctaatccctggagtctgtgactatttatgttataggggaagggactgaaggggaagatggagctcaggtggttgatgagttgaccttgagatggggagacaacctggactgtccctctgggcacagtgtaatcacaagggtccac-atgaaaggaggaggaagaggggagtggggattagagcagcgcaatgggagtctccatca----------gctttgaaggtggaggaaggccacgagccatgaatgcaggtggcctgtagaggctggaaaagtcaa-ggaactgattct--cctgagtctccagagggaacgcagccctgcagatgccttgattttagcccaggaaaaacagggtccgatttgtg-tctccagaagtggaaggggtcagtgtgttctctcctgctgccatgcttctgataattttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47745982 867 + 51301725 CACTATCGTCCTGGGTTTAACATCTTCACGCTGTACAAGGAAGATGGGGTGCCTGTCCCTGAGCTCTACAAAAGAATATTCTGGAACAGTTTCCTCATTAGCCCTGTGACTGCAGCACATGCAGGGACCTACAGATGTCGAGTTTTTCATCCGCACTCCCCCACTGAGTGGTCGGCACCCAGCAACCCCCTGGCGATCATGGTCACAGGTCAGAGGGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGGTGTCCACCAGGGTCCCATCATCCAGGCCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACATGGAAATGGGTGCTGTGGTGGGAAGAATAACTGTCCCCACTGATGGCCACATTGTAATCCGTGGACCCTGTGACTCTTTATGTTATAGGGCGGGGGACTGAAGGGGAAGATGGAGCTCAGGTTCTTGATGAGTtgaccttgagatggggagatggcCTGGACTGTCCCGCTGGGCTCAGTGGAATCACAAGGGTCCTC-AtgacaggaggaggaagaggggagtgGGGATTACAGCAGCATCATGGGAGACTCCATCAGCCACTGTgggctttgaaggtggaggaaggtcACGAGTCACAAAGGCAGGAGGCCTATAGGGGCTGGAGAAGTCAAGGGAACTGATTCTCCCCTGAGTCTCCAGAGGGAACACAGCCCTGTAGAtgccttgattttagctcagGAAGAACTGGATCCAATTTCTGTTCTCCAGAAGTGGAAGGGGTCAGTGtgttctctcctgctgccatgtttGTGATGATTTtctacagcagcaacaggaaaccaacacaggaacCCAGGTCAAGGACaag
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47425039 867 + 50890351 CACTATCATCCTGGGTTTAACATCTTCACGCTGTACAAGGAAGACGGGGTGCCTGTCCCTGAGCTCTACAAAAGAATATTCTGGAACAGTTTCCTCATTAGCCCCGTGACTGCAGCACACGCAGGGACCTACAGATGTCGAGTTTTTCATCCGCACTCCCCCACTGAGTGGTCGGCACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCGTCAGGGTCCCATCATCCAGGCCCTGACTgtatttggggtaaagggggatttaatacaggggaatgggtgctgtggtgggaagaataactgtccccactgatggccacattgtaatccgtggaccctgtgactctttatgttatagggcaggggactgaaggggaagatagagctcaggttgttgatgagttgaccttgagatggggagacggcctggactgtcccgctgggctcagtggaatcacaagggtcctc-atgacaggaagaggaagaggggagtggcgattacagcagcgtcatgggagactccatcagccactgtgggcttttaaggtggaggaaggtcacgagtcacaaaggcaggaggcgtataggggctggagaagtcaatggaactgattctcccctgagtctccagggggaacacagccctgtagataccttgattttagcccaggaagaactggatccaatttctgttctccagaagtggaaggggtcagtgtgttctctcctgctgccatgtttgtgataattttctatagcagcaacaggaaaccaacacaggaacccaggtcaaggacaag
i chlSab2.chr6                    C 0 I 24494
e calJac3.chr22                    3664685 1699 - 49145316 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=11875.000000
s hg38.chr19_GL949751v2_alt         740635 17 +  1002683 GTAAGAaacaacacaag
s panTro4.chr19                   59677731 17 + 63644993 TTAAGAAATGACACAAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56633407 17 + 60714840 TTAAGAaaggacacaag
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13356 17 -    21488 TTAAGAAACGACACAAG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47746849 17 + 51301725 tttaaaaaccaaacaag
i papAnu2.chr19                   C 0 I 65
s chlSab2.chr6                    47450400 14 + 50890351 Ttaagaaaccaaac---
i chlSab2.chr6                    I 24494 C 0
e calJac3.chr22                    3664685 1699 - 49145316 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=28507.000000
s hg38.chr19_GL949751v2_alt         740652 42 +  1002683 gatagccgggtgtggtggcaggcgcatgtaatcctagcgact
s panTro4.chr19                   59677748 42 + 63644993 GAtagccgggcgtggtggcaggtgcatgtaatcctagcgact
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56633424 42 + 60714840 gatagctgggcatggtggcaggcccatgtaatcctagtggct
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13373 42 -    21488 GAtagccgggcgtaatggcaggcacatgtaatcctagcgact
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47450414 41 + 50890351 gatagccgggcatggtggtgggcgtgagtaaacc-aacgact
i chlSab2.chr6                    C 0 I 6
e calJac3.chr22                    3664685 1699 - 49145316 I
e papAnu2.chr19                   47746866 65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=8302.000000
s hg38.chr19_GL949751v2_alt         740694 20 +  1002683 tgggaggctgagggcaggag
s panTro4.chr19                   59677790 20 + 63644993 cggcaggctgagagcaggac
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56633466 20 + 60714840 ccggaggctgagggcaggag
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13415 20 -    21488 caggaggctgagggcagggg
i nomLeu3.chr10_GL398297_2_random C 0 C 0
e calJac3.chr22                    3664685 1699 - 49145316 I
e chlSab2.chr6                    47450455  6 + 50890351 I
e papAnu2.chr19                   47746866 65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=234318.000000
s hg38.chr19_GL949751v2_alt         740714 300 +  1002683 aatcacttgaacccaggagacagaggttgcagtgaccctagaccacaccacttcactccagctggggtgaaggagtgagactctgtctcCAT--------AATTAATTAATTAATTAAaggaaccaaacaaggggaaggttggctacaccgagatgagcaagtgtgggatgatgatgccaccaccaggctccatccacatagggaggggttgatactcctcaaaccagcaccaggagccagcctatggaagctggcaccatggagAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCGACCAGGA
s panTro4.chr19                   59677810 300 + 63644993 aatcacttgaacccaggagacagacgttgcagtgagcctagaccacaccacttcactccagcctgggtgaaggagtgagactctgtctccaa--------aaTTAATTAATTAATTAAAGAAACCAAACAAAGAGAAGGTTGGCTACACCAAGATCATCAAGTGTGGGATGATGATGCCACAACCATGTTCCATCCACATAGGGAAGTGTTGATACTCCTCAAACCAGCACCAGGAGCCAGCCTATGGAAGCTGGCACCATGGAGAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56633486 300 + 60714840 aaatgcttgaacccaggagacagaggttgcagggagccaagaccacaccaattcactccagcctgggcaaaggaatgagactctgtctccaa--------aaTTAATTAATTAATTAAagaaaccaaacaaggggaaggttggctaccctgagatcagcaagggtgggatgatgatgccaccaccaggctccatccacagagggaggggttgatgctcctccaaccagcaccaggagccagcctatggaagctggcaccatggagAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13435 299 -    21488 aatcacttgaacccaggagacagaggttgcagtgagccgagaccacaccacttcactccagcctgggcgacggagtgagactctgtctccaa--------aaTTAATTAATTAATTAAagaaaccaaacagggagaaggttggctaccctgagatcagcaacggtggggtgatgatgccaccaccaggctccatccacatagggaggggttgatcctcctcaaaccagcaccaggagccaccctatggaagct-gcaccatggagaaggcaccgacatggcgagagTGGCTCCCAGTCCCCACCAGGA
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47450461 308 + 50890351 aatcgcttgaatccgggaggcagaagttgcagtgagccaagaccacaccactatactcctgcctgggtgaaaaagtgacactctgtctcaaaaatcaattaattaatcaattaattaaAGAAATCAAACAAGGAGAAGGTTGGCAACTCCGAGATCAGGAAGGGCGGGACGCTGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTCGATGCTCCTAGAACCAGCACCAGGAGCCACCCTATGGAAGCTGAGGCCATGGAGAAGGCACAGGCATGGCAGGAGTGGCTCCCAATCCCCACCAGGA
i chlSab2.chr6                    I 6 T 15964
e calJac3.chr22                    3664685 1699 - 49145316 I
e papAnu2.chr19                   47746866  65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=269296.000000
s hg38.chr19_GL949751v2_alt         741014 345 +  1002683 ACAGGGTGTGTGGACACTGGTGCCTGCCTTATTCATCAGTTCATACCTACTGCCAAGGATTCCAATTCATCCAAAAGAGATTGAACCAGGCTGATAAGAGGCTGGATGTGCAGCCTATCCTGGTTCCTCTTTCACCCCCACATAAACAGCAGGAAAGACATTAGTGTGAAATAGATACAACACCCCAAGAGATGAGGCTAAGCCCAGTGGGAAGGGAATCAGAGGCGACTagagacagagggacagagaagagggagggagacagaTGGAAGGACCTGCACCAGGAGTTATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACAGACACCAG
s panTro4.chr19                   59678110 345 + 63644993 ACAGGGTGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATAGCTCCTGCCAAGGATTCCAATTCGTCCAAAACAGATTGAACCAGGCTGCTAAGAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACATCGACAGCAGGAAAGACATTAGTGTGAAATAGATACAACAGCCCAAGAGATGAGGCTGAGCCCAATGGGAAGGGAATCAGAGGCTACTAGAGACAGAGAGACAGAGAAGAGGGAGGGAGACAGATGGAAGGACCTGCACCAGGAGTTATGGGCACAGAAAAGAACTTCAAGACACAGAGAGGAAGGAGAGAGACAGACACCAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56633786 343 + 60714840 ACAGGGTGTGTGGACAGTGCTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATGCATCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGACGTGCCGCCTATCCTGGTTCGTCTTCCACCCCTACATAGACAGCAGGAAAGACATTAGTGTGAAATAGATACAACAGGCCAAGAGATGAGGCTGAGCCCAGTGGGAAGGGAATC--AGGCTACTAGAGACAGAGGGACAGAGAAGAGGGAGGAAGACGGATGGAAGGACCTGCACCAGGAGATATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACAGACACCAG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13734 345 -    21488 ACAGGGTGTGTGGACACTGGTGCCTGCCTTGCTGATCAGTTCATACCTCCTGCCAAGGATTCCAGTTCATCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGACGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACATAGACAGCAGGAAAGACATTAGTGCCAAATAGATACAACAGCCCAAGAGATGAGGCTGAGCCCAGTTGGAGGGAAATCAGAGGCTACTagagacagagggacagagaagagggagggagacagaTGGAAGGACCTGCACTGGGAGTTATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACAGACACCAG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47434805 334 + 50890351 ACAGGGAGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAGGGACTCCAGTTTGTCCAAAAGAGATTGAACCAGGCTGCTGAGAGCCTGGACATGCAGCCTGCCATGGTTCCTCTTCCACCCCCACATAGACAGCAGGAAACAGATTAGTAGGAAACAGATACAACAGCCTAAGGGATGAGGCTGAGCCCAGTACGAAGGGCGTCCGGAGCTACTAGAGACAGACGGACAGAGAAGAGGGAGGGACACCAATGGAGGGACCTGCACCAGGGGAT-----------AAAagacagggagacacagagagggaggagagagacagacagCCA
i chlSab2.chr6                    T 15964 C 0
e calJac3.chr22                    3664685 1699 - 49145316 I
e papAnu2.chr19                   47746866  65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=161166.000000
s hg38.chr19_GL949751v2_alt         741359 169 +  1002683 CAAGGGGAAGCCTCACTCATTCTAGGTGCCATGGATGGGATGATAAAGAGAGACACCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGA
s panTro4.chr19                   59678455 169 + 63644993 CGAGGGGAAGTCTCACTCATTCTAGGTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACACAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAAATCAGAAGAGACAATCATCCTGCAATGTCGGTCAGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56634129 169 + 60714840 TGAGGGGAAGCCTCACTCATTCCAGTTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCCCAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14079 169 -    21488 AGAGGGGAAGCCTCCCTCATTCCAGGTGCCATGGATGGGATGATAAAGAGAGACGCCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAAA
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47435139 169 + 50890351 GGAGGGGAACCCTCACTCATTCCAGGTGCTGTGGATATGATGACAAAGGGAGACGTCTTCTAACCTCACAACCTCTCTTTCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGGAGAGACGGTCATCCTACAATGTTCCTCAGA
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771331 165 + 49145316 CGAGGGAGAGCTTCACCC---TGAGGTCCCAGGTGAGGGGTGAGGAAG-GAGACCCCTGTGAATTCCTCTGTCTTTGCTCCCAGGTGCATTCACAAAACCTTCCATCTCAGCCCACCCAAGCTCCCTGGTGGCTGCGGGAGTTAGGGTGACCGTGAGCTGTCACTCGGA
i calJac3.chr22                   T 1699 I 92
e papAnu2.chr19                   47746866  65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=57031.000000
s hg38.chr19_GL949751v2_alt         741528 86 +  1002683 TGTCAGGTTTCAGCACTTCCTTCTGCACAGAGAAGGGAAGTTTAACGACACTTTGCACCTCACTGGAGAGCACCATGATGGGGTTT
s panTro4.chr19                   59678624 86 + 63644993 TGTCATGTTTGAGCACTTCCTTCTGCACAGAGAGGGGGAGTGTAACGACACTTTGCACGCCATTGGAGAGCTCCACGATGGGGTCT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56634298 86 + 60714840 TGTGGTGTTTGAGCACTTCCTTCTGCACAGAGAGGGGGAGTTTAACGACACTTTGCGCCTCATTGGAGAGCTCCATGATGGGGTCT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14248 86 -    21488 TGTCATGTTTGAGCACTTCCTTCTGCACAGAAAGGGGAAGTTTGAGGGCACTTTGAACCTCACTGGAGAGCTCCATGATGGGGTCT
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47435308 86 + 50890351 TATCGTGTTTGGGCACTTCTTTCTGCACAGTGAGGTGACCTTTGAGGAGCCCTTGCACCTTGTTGCAGAGCTCCATGGTAGGGGTT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771496 92 + 49145316 I
e papAnu2.chr19                   47746866 65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=153702.000000
s hg38.chr19_GL949751v2_alt         741614 153 +  1002683 CCAAGGCCAACTTCTCCATCGGTCCCATGATGGAAGACCTGGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCC-ATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTCATCACAGGTGAGAGTGTCCGGA-CATTCTTCTC
s panTro4.chr19                   59678710 154 + 63644993 CCGAGGCCAACTTCTCCATCGGTCCCATGACGGAAGACCTGGCAGGGACCTACAGATTCTACAGTTCTGTTCCTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCTCTGGACATCGTGATCACAGGTGAGAGTGTCCGGA-CATTCTTCTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56634384 154 + 60714840 CCAAGGTCAACTTCTCCATCGGTCCCATGATGCCTACCCTTGCAGGGACCTACAGATGCTACGGTTCTCTTTCTCACTCCCCCTATGAGTGGTCAGCTCCCAGTGACCCTCTGGACATCATGATGACAGGTGAGAGTGTCCAGA-CATTCTTCTT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14334 154 -    21488 CCAAGGCCAACTTCTCCATCGGTCCCATGAGGCACGACCTTGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATGAGTGGTCAGCTCCCAGTGACCCTCTGGACATCGTGATCACAGGTGAGAGTGTCCGGA-CATTCTTCTC
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47435394 154 + 50890351 CCCAGGTCAACTACTCCATCAATTCCACGACGTCTGACCTTGAAGAGACCTTCAGATGCTACGGTTCTCTCACTCACTCCCCCTATGTGTTTTCAGCTCCCAGTGACCCCCTGAACATCGTGATCACAGGTGAGAGTGTCCGGA-CATTCTTCTC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771588 155 + 49145316 TCAAGGCTGTCTTTTGCCTGGGTCCTGTCACGCCGGCCCAGGCAGGAGCCTACAGATGCTGTGGTTCTTTCAGTCACTCCCGCTATGAGTGCTCGGCTCCCAGCGACCCCCTGGAGATTGTGATCACAGGTGAGTGTGGCTGGACCATCCTGCTC
i calJac3.chr22                   I 92 I 615
e papAnu2.chr19                   47746866  65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=1025373.000000
s hg38.chr19_GL949751v2_alt         741767 1342 +  1002683 ATTGTCATTGGGATGCAGAGTGAATGATCCACGACTTGGAACCCCCAGGTAGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACCGGGAGTTAGAAAAGACAGAAGGAGTTAAAGGAGA----CAGACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCCGTGTTTATTCTGACACCTCTGCCTTCCATGTAATGGAGAGTAACCGTCCCAGGATATCATGGCCCCAGAACACCAACTCCTGTATGCTGTGTGAACTTGTGGTCTCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAAAGGATCACTGAGAGGCACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGGAGTGGTGAGAATGATGGAAGGGAGCAGAGAAAAGcactaaaattagactcctgagggagaggcacaaggacatagaaagatggagatgtggggatgaattgcagagattccaaagagaactagagagaccgagaggcagagca------------------agacagatgata---------------------gatggatagatatagatagatgataaataggtagatgatagata----ataggttaaagatacatagatgatgattgattgattc----attaatagatgagacatagagatgatgatgatga------------------agaca----gatagata--------------------------------------------atacatagagatagagaggcagac------agaagtcat--agagagagagatgatacatagatatagataacagatgattgatggatagat--------agacaagtgat----agatacatagatgatatatagatatagatgacaggtagagaatttGTAGATAGGCACCGAatagataaatagatagatcgatagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTTAGAATTTA--AAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACA----TATCTAGAGGTGTGGAAGCGAGGTCagagacctagagagacagagaaggtgg
s panTro4.chr19                   59678864 1369 + 63644993 ATTGTCATTGGGATGGAGAGTGAATGATCCACGACTTGGAACCCCCAGGTAGTTCTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAAGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGGAGTTAGAAAAGATGGAAAGAGCTAAAGGACA----CAGACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACTTCCACAAAGTGTTCTCTACCATAAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCCTGTGGCACCTACAGATGCTGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAGAGTAATCGTCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGCAGTCCCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGATAGGATCACTGagagacacagagagaaatcagggacaccaaaaagcaaagacataaacacacagagaaagagccagaggaaggagattgagagactcacagacacataaagagagag--aagagggcagagaagtggagacaatgatggaagagagcagagaAAACCACTAAAATTAGAGTCCTGAGGGCGAGGCACAAGGGCATAGAAAGATGGAGATGTGGGGATGAATTGCAGAGATTCCAAAGAGAACTAGAGAGACCGAGAGGCAGAGCA------------------agacagatgatagatggatagatagagatagatgatggatagatatagatagatgataaataggtagatgatagata----ataggttatagatacatagatgatgattgattgattc----attaatagatgatacatagagatgatgatgatga------------------agatagatggatagata--------------------------------------------ATACATagagatagagaggaagacaaagagagaaatcatagagagagagagaTGATACATatatatagataatagatgattgatg----gat--------agacaattgat----agataaatagatgacatagagatatagacgacaggtagagaatttgtagataggcaccgaatagataaatagatagattgatagataatagatagaAATCTGCAGAAAGTTATGAACGGGTCACAAACTGAGAAACTCAGAGTTAA--AAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAACGGAAAACA----TATGTAGAGGCAGGGAAGTGAGGTCAGAGACCTagagagacagagaaggcag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56634538 1350 + 60714840 ATTGTCATTGGGATGCAGAGTGAATGATCCAGAACTTGGAG-GCCCAGGTGGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGGGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGATAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACCGAGAGCTAGAAAAGACACAAGGAGTTAAAGGAGA----CAGATAGACAGACATGTCCCAGAGAGAGGTGACCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGATTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCCAAGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAGAGTAATCGTCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTCCCCACACTAGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAGAGGATCACTGAGAGACACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAAACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGAAGTGGAGAGAATGATGGAAGGGAGCAGAGAAAAGCACGAAAATTAGAGTCCTGAGGGAGAGGCACAAGGACATAGAAAGATGGAGATGTGGGGATGAATTGCAGAGATTCcaaagagaactagaaagaccgagaggcagagca------------------agacagatgata---------------------gatggatagatatagatagatgataaataggtagatgatagata----ataggttatagatacatagaagatgattgattgattcattgattaatagatgatacatagagatgatgatgatga------------------agata----gatagata--------------------------------------------atacatagagatagagaggcagacaaagagagaaatcatagagagagagagatgatacatagatatagataatagatgattgatggctagat--------agacaattggt----agataaatagatgatatatagatatagatgacaggtagagaatttgtagataggcaccgaatagataaatagatagatcgatagagaatagatagaaatatgcag-aagttatg-acaggacac-aagtgag-aactcagaattta--aaaagt--acattaagtc-accaacccaaggagggtcagagagaataaaacaATCCAAAAAGGGAAAACATATCTATCTAGAGTTGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGAGAAGGTAG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14488 1347 -    21488 ATTGTCATTGGGACACAGAGTGAATGATCCAGGACTTGGAG-GCCCAGGTGGTTGTAAGGAAGATGAGCGTGGGGTTCTTATGAAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAAAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACCGGGAGTTAGAAAAGACAGAAAGAGTTAAAGGAGA----CAGACAGACAGCCATGTCCCAGAGAGAGGTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAAGTTAGCAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACTCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCA-GCCTTGTGGAACTTACAGATACCGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAGAGTAATCTTCCCAGGATATCGTGGCCCCAGAACACCAACCCCTGTATGCCGTGTCAACTTGCGGTCCCCACACTGGATTCTGAGGCTCATATTCAAAATAATCCCACATATGAGAGGATCACTGAGAGACACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACAGACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACACAAAGAGAGAGAAAAGAGGGCAGAGAAGTGGAGAGAATGATGGAAGGGAGCAGAGAAAAGCCCTAAAATTAGAGCCCTGAGGGAGAGGCACAAGGACATAGAAAGATGGAGATGTGGGGACGAATTGCAGCGATTCCAAAGAGAACtagagagaccgagagacagagca------------------agacagatgata---------------------gatggatagatatagatagatgataggcaggtagatgatagata----ataggttgtagatacatagatgatgattgatggattc----attaacggatgatacatagagaggatgatgatga------------------agata----gatagata--------------------------------------------atacatagagatagagaggcagacaaagagagaa-tcatagagagagggagatgatacatagatatagataatagatgattgatggatggat--------agacaattgat----agataaatagatgatatatagatacagatgagaggtagagaatttgtagataggcaccaaatagataaatagatagcttgatagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTCAGAATTTA--AAAAAGTAACATCAAGTCAACCAATCCAAGGGGAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACA----TATCTAGAGGTGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGACAAGGTGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47435548 1440 + 50890351 ATTGTCACTGGGACACAGAGTGAATGATCCAGGACTTGGAAGCCCCGGGTGGTCATGAGGAAGATGAGTGTGGGATTCTTATGGAAAGACACTCACTTGGGGAGATCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCTGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGGAGGTAGAAAACAGAGAAAGAGTTAAAGGGGACACTCAGACAGACAGACATGTCCCAGAGAGAGGCGTTCTTCCATGCTGACTTTGCTCAGAGACTTCGCACAGGTTAGAAGCTTCATTTCTGTGTTACCTCCACAAAGCGTT-TCTACCAGGAGAACCCAAGGACACGCATATTTCTGTCCTGAGTCAGCCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATTCCGTGTTTGTTCTAACACCTCTGCCTTCTGTGCAGTGAAGAGTCATCGTCCCAGGATATCATGGACCCAGAACGCCAACCCCTGTATGCTGTGTGTACTTGGGGTCCCCGCACTGGATTCTGAGGCTCATATTCCACATAACCCCACATATGATAGGATTCCTGAGAGACACAGACAGAAATCAGGAACATCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAGAGagaggaaagagggcagaggagtggagagaatgatggaagggagcagagAAAAGCTCCAAAATCAGAACCCTGAGGGAGGGGTACAAAGACATAGATAGATAAAGATGTGGGGATGGATTGCAGAGATTCCAAATAGAAGTACAAAGACTTAGAGGCAGAGAAAGACAAGGAGATGGagagagacagatggtagacg-----------------gatagatagatatagatagatgataaataggtagatgatagatagtggatgggttatagatacatagatggcgactg------------atagatagatgatacatagacatgatgatgatagatagatagatagacagatagata----gatagatagacacatagatagacacatagatagatacatagatacgtagatgatacatggagacagagaggcagacagatagagag------ggaacagacagatgatacatagatatagataatagatagatggtgaatagatagagagacagacaattgatagagagatagataaatgatacatagatatagattacagatagataattgatagattgacaggtagtagatagatagatcaatcgatagataatagatagaAATGTGCAGAAGGTTATCAACAAGACAGAAAGTGAGAAACTCCGAATTAAAGAAAAAGGAAGATCAAGTC-AACAATCCAAGGAGGGTCAGAGAGAAGAAAACAATACAAAAAGGGAAAACA----CACCTCGGACTGGGGAAGTGAGGTCagagacctagagagacagagaaggtgg
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771743  615 + 49145316 I
e papAnu2.chr19                   47746866   65 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109    0 + 64156825 C

a score=135356.000000
s hg38.chr19_GL949751v2_alt         743109 136 +  1002683 aaggaggaaatagacatgaagagagat-ggggtggagggtgagagagagagagagagagagCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAG--GTGAAGGGAGCTGTGACAAGGAAGATCCTCCGTAAGG
s panTro4.chr19                   59680233 134 + 63644993 aaggaggaaatagacatgaagagagtt-ggggtggagggt----gagagagagagagagagCATTAGGCCATAGAGCAGGGGAGTCACTTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56635888 126 + 60714840 AAGGAGGAAGTAGACATGAAGAGAGAT-GGGGTGGAGGGT----------GAGAGAGAGAGCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAG--GTGAAGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    15835 127 -    21488 AAGGAGGAAATAGACACGAAGAGAGATGGGGGTGGAGGGT----------GAGAGAGAGAGCATTACGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAG--GTGAAGGCAGCTGTGACAAGGAAGAACCTCCCTGAGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47746931 124 + 51301725 AGGGAGGGAAT-GACAGGGAGAGTcg--ggggtggagggt------g------agagagagcattaggTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGGAAGCTGTGACAAGGAAGAACCTCCCTGAGG
i papAnu2.chr19                   I 65 C 0
s chlSab2.chr6                    47436988 132 + 50890351 aaggaggaaacagacatgaagagagat-ggggtggagagt------gagagacagagagagCATTAGGTCATAGATAAGAGGAGTGTGTTCTCAGCTCAGATGTGGGGGGAGCTGTGACAGGGAAGAACCTCCCTGAAG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771743 615 + 49145316 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=916704.000000
s hg38.chr19_GL949751v2_alt         743245 663 +  1002683 --AAAATGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCTGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTATGACATGTACCATCTATCCAGGGAGGGGGAGGCCCATGAACGTAGGTTCTCTGCAGGGCCCAAGGTCAACGGAACATTCCAGGCTGACTTTCCTCTGGGCCCTGCCA------CCCACGGAGGAACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAGCCCATGGCTGTCCCATGTCCTAT---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------GGATGGAGAGAAGGATGAACAGATGCAGAGA-GAAGACGAAGCTTGGGTGTGAGGGAGGGATCAGGGCACAGGATGGCAGACAGGGCACCTCCAAACCCTCCTACATGGCCTGCATGAAGGCCTGCGGCCAGGACTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGAGAGACCCAGA-GGA-GGGAGACTGGGCTCAGTTTGGGAAGATCAGAGGTTCCCTCAGCCCCTCAACATTACCCA-TTTCCCAGAAGCCCATCCTGGCCTCCCACCCACACAG
s panTro4.chr19                   59680367 664 + 63644993 --AAAATGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAATGTGACCTTGTTCTGCAGCTCCCGGAGCTCCTATGACATGTACCATCTATCCAGGGAGGGGGAGGTCCATGAACGTAGGCTCCCTGCAGTGCGCACCATCAATGGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGCCA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACGCTCCCTACGAGTGGTCAAACTCGAGTGATCCACTGCTTGTTTCCGTCACCGGTGAGGAAACCCCATACCTGTCCCATGTCCTAT---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGATGCAGAGA-TAAGACGCAGCATGCGTGTGAGGGAGGGATCAGGGCGCAGGACGGCAGACACAGCACCTCCAAACCCTCCTGCATGGCCTGCATGGAGGCCTCCGATTAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGAGACACCCAGA-GAAGGGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-TTGCCCAGAAGCCCTTCCTGGCCTCTCACCCACACAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56636014 663 + 60714840 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCAGGGTTCAGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCCGGAGGTCCTATGACATCTACCATTTATCCAGGGAGCAGGGGAGCCGTGAATGTAGGCTCCCTGCAGTGTCCAAGGTCAATGGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGTCA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGAAAACCCCATATCTGTCTCATGTCCTGT---------GATCCTAAAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGGAGCATGGACAGATGCAGAGA-GAACACGCAGCTTGGGTGTGAGGGTGGGGTCAGGGCGCAGGATGGCAGACACGTCACCTCCAAACCCTCCTGCATGGCCTGCATGGAGGCCTCCGATCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGATAGACCCAGA-GGA-GGAAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCTCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAGCCCCTCCTGGCCTCTCACCCACACAG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    15962 663 -    21488 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCAGGAGCTCCTATGACGTGTACCATCTATCCAGAGAGGAGGGGGGCCATGAACGTAGGCTCTCTGCAGTGCCCAAGGTCAACGGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGCCA------CTCACGGAGAGGCCTACAAATGCTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAGACCCAAGTGACCCACTGCTTATTTCTGTCACAGGTGAG-CAACCCCATATCTGTCCCATGTCCTAC---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGGATGGACAGATGCAGAGA-GAAGACGAAGCTTGTGTGTGAGGGCGGGGTCAGGGCACAGGATGGCAGACACGGCACCTCCAAACCCTCCTGCACGGCCTGCATGGATGCCCGCAGTCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGAGAGACCCAGA-GGAGGGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAGCCCATCGTGGCCTCTCACCCACACGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47747055 662 + 51301725 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCCCACAGGAGAGAACATGACCTTGTCCTGCAGTTCCCGGCACTCCTTTGACATGTACCATCTATCCAGGGAGGGGGAGGCCCATGAACTTAGGCTCCCTGCAGTGCCAAGCGTCAATGGAACATTCCAGGCTGACTTCCCTCTGGGCCCTGCCA------CCCATGGAGGGAACTACAGATGCTTCGGCTCTCTCCGTGACTCTCCCTATGAGTGGTCAGACCCGAGTGACCCACTGCCTGTTTCtgtcacaggtgaggaaaccccATGCCTGTCCCATGTCTTAT---------GATCCCAGAGCCATAGCTGGGGAGCTTCCTGCTGA------------------------TGATGGAGAGAGGGATGGACAGATGCAGAGA-GAAGGCGAAGCCTCGGTGTGAGGTTGGGGTCAGGGCACAGGAGGGCAGACACAGCACAT-CAAACCCTCCCGCACTGCCTGCATGGAGGCCTGCGGTCAGGGCTCCAGGCACCCaggcagatggagaaactggTCAGGACAGACCCAGA-GGG-GGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAACCCATCCTGGCCTCTCACCCACACAG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47437120 663 + 50890351 --AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCAGGCCCCACGGTTCAGGCAGGCGAGAACCTGACCTTGTCCTGCAGCTCCCAGACCTCCTTTGACATGTACCATCTATCCAGGGAGGGGGAGGCCCGTGAACTTAGTCTCTCTGCAGTGCCAAGCGTCAATGGAACATTCCAGGCCAACTTCCCTCTGGGCCCTGCCA------CCCACGGAGGAACCTACAGATGCTTCGGTTCTTTCCGTACCGCACCCTACAAGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGGAAACCCCATGCCTGCTCCATGTCTTTT---------GATCCCAGAGCCATAGCTGAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGGTTCAGAGA-GAAGACCAAGCTTCGGTGTGAGGGTGGGATCAGGATGCAGGATGGCAGAGAGGGCACCTCCAAACCCTCCTGCATGGCCTGCGTGGTGGTCCGCGGTCAGGGCTCCAGGCACCCAGGCAGATGGAGAAACTGGTCAGGGCAGACCCAGA-GGA-GGGAGACGGGGCTCAATTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACTCA-TTTCCCAGAAGCCCATCCCGGCCTCTCACCCACACAG
i chlSab2.chr6                    C 0 T 42324
s calJac3.chr22                   45772358 665 + 49145316 AAAATCAGCCTCTTTTCCTCCCAGGAAAACACAAAAAGCCTTCTCTCTCCACCCAGGAGGACCCCAGGATGGGGAGTGGAGAGAACGTGACGTTATTCTGCATCTCTGAAATCTCATTTGACCGGTACCATCTGTGGAGAGAGGGGGCTCCTTATGGCCAGTGGCTCAGTGGAGGTCAGGGACACAGGGGAGCATTCCAGGCCAACTTTTCTGTGGGCCTCGCAACGCCAGCCCATGGAGGGACCTATAGATGCTACGGTTCTTTCAATGCCTCCCCCTATGAGTGGTCGGCCCCCAGTGAGCCCCTGCACCTTTCTGTCACAGGTGAGGAG--CCCACACCTGCCACCTGTCCTGTTGTCCACTAAGTCCCAGAGCCATACCAGAGGGGCATCCCACTGGGCACACAGGGGCATTAGGTATTCTGGACAAAATGAAGCAGTGAAAAATACAGACAGGGATGAACAGGCTGAGTGGGATGGGGCTGTCAGGGTGCAGGGC-ATAGACAGGGCAGCTCTGCGCCCTCC------------------GCCC----------CTCC-----------TACATGAAGAAAGAGGTCAGGGCAAACACAGGTGGAGGTGAGGCCAGATGGAGTTTGTTGAGATCAGAGGTTGCCTCAGCCCCTCGCCCTTTTCCATTTTCTCCGAAGCCCCTCCTGACCCCTCA-CCACAGAG
i calJac3.chr22                   I 615 C 0
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=6722.000000
s hg38.chr19_GL949751v2_alt         743908 7 +  1002683 GGATGTC
s panTro4.chr19                   59681031 7 + 63644993 AGATGTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56636677 7 + 60714840 AGATGTC
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    16625 7 -    21488 AGATGTC
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47747717 7 + 51301725 AGATAGC
i papAnu2.chr19                   C 0 C 0
s calJac3.chr22                   45773023 7 + 49145316 AGATTTC
i calJac3.chr22                   C 0 T 1697
e chlSab2.chr6                    47437783 42324 + 50890351 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=62347.000000
s hg38.chr19_GL949751v2_alt         743915 92 +  1002683 ATCACCTGCAACCCCTACACCCTTTAC-TTTTGTTTG-AGAAATATTTATTGAGGATAAATATACCTATATAGCTTACCACCTTTAACA--ttttt
s panTro4.chr19                   59681038 96 + 63644993 ATCACCAGCAACCCCTACATCCTTTTCTTTTTGTTTGAAAAAATATTTATTGAGGTTAAATATACCTATATAGCTTACCACCTTTAACGttttttt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56636684 95 + 60714840 ATCACCAGCAACCCCTACACCCTTTTCTTTTTCTTTGAAAAAATGtttattgaggtgaaatatacccatatagcttaccacctttaaca-tttttt
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    16632 93 -    21488 ATCACCAGCAACCCTTACACCCTTTTCTTTTTGTTTGAAAAAATAtttattgtgattaaatatacctatatagcttaccacctttaaca---tttt
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47747724 94 + 51301725 ATCACTAGCAACCCTTACACCCTTTTCTTTTCAATTGAAAAAATGCTGATTGAGGTTAAGTATACCTGTATAATTTACCAAcgttacca--ttttt
i papAnu2.chr19                   C 0 T 31551
e calJac3.chr22                   45773030 1697 + 49145316 T
e chlSab2.chr6                    47437783 42324 + 50890351 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=389830.000000
s hg38.chr19_GL949751v2_alt         744007 338 +  1002683 tttttgaggcggagtcta--gctctgtcccctatgctggagtgcattggcacaatctcagctcactgcaacttccgcctcctgggttcaagcgattctcttgcctcagccacctgagtagctggtgctacaggcgcgcaccaccatgccaggctactttttgtatttttagtagagagggggtttcaccatgttggtcaagctggtctcgaactcctgaccacgtgatccacccgcatcagcctcccaaagtgctgggattacaggcatgagccaccacgcccagccACATTTACCATTTTTAAGTGTAAAGTCTAGTGGTCataaatacattaatatat
s panTro4.chr19                   59681134 338 + 63644993 tttttgaggtggagtcta--gctctgtcccctatgcaggaatgcagtggcacaatctcagctcactgtaacctccgcctcctgggttcaagcgattctcctgcctcagccacctgagtagctggtactacaggcgcgcatcaccacgccaggctactttttgtatttttagtagagagggggtttcaccatgttggtcgagctggtctctaactcctgaccacctgatccacccgtctcagcctcccaaagtgctgggattacaggcatgagccactgcgcccggccACGTTTACCAATTTTAAGTGTAAGGTCTAGTGGTCATAAATGCATACATATAT
i panTro4.chr19                   C 0 I 16
s ponAbe2.chr19                   56636779 338 + 60714840 tttttttggtggagtcta--gctctgtcccctatgctggagtgcagtggcacaatctcagctcactgcaacctccgcctcctgggttcaaacgattctcctacctcagccacctgagtagctggtactacaggcacgcaccaccatgccaggctactttttgtattttgagtagagagggggtttcaccatgttggtcgagctggtctcgaactcctgaccacgtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccacttttaccatttttaagtgtaaattctagtggtcataaatacatttataTAT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    16725 329 -    21488 tttttgaggtggagtcta--gctctgtcccctacgctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagccacctgagtagctggtaccacaggtgcacaccaccatgccagcttactttct-tatttttagt--agggggggtttcaccctgttgttcaagctggtctcgaactcctgaccaggtgatccaccc------acctcccaaagtgctgggattataggcatgagccaacgcgcccggccacgtttaccatttttaagtgtaaagcctagtggtcataaatacatacatttgt
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47716267 336 + 51301725 --tttgaggcgaagtcta--gctctgtcccctatgctggagtacagtggcacaacctcggctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagccacccgagtagccggtactacaggtgtgcaccaccaggccaagctaatttttgtatttttagtagagacagggtttcatcatattggtcgggttggtctccaactcctgacctcgtgacctgcctgcctcggcctcccgaagtgctgggattataggtgtgagccaccactcccagccacctttaccatttttaagtgtaaagtcAAGTGgtcataaatacatttatatat
i papAnu2.chr19                   T 31551 C 0
s chlSab2.chr6                    47395459 340 + 50890351 tttttgaggcggagtctcttgctctgtcccctatgctggagtacagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagcaattatcctgcctcagccacctgagtagccggtactacaggcatgcaccaccacgccaggctaatttttgtatttttagtagagacagggtttcactatattggtcgggttggtctcgaactcctgaccacgtgatccgcctgcctcagcctcccgaagtgctgggattacaggtgtaagccaccatgccaagccacctttaccatttttaagtgtaaagtctagtggtcataaatacatttataCAT
i chlSab2.chr6                    T 42324 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=-6069.000000
s hg38.chr19_GL949751v2_alt         744345 16 +  1002683 ----------------------------------atata--------tatacacatat--
s ponAbe2.chr19                   56637117 19 + 60714840 ----------------------------------ATATAt-----ttttttttttttt--
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    17054 14 -    21488 ---------------------------------------t-----tgtttgtttgttt--
i nomLeu3.chr10_GL398297_2_random C 0 I 17
s papAnu2.chr19                   47716603 60 + 51301725 ttatgtgtgtgtgtgtgtatacatatatgtgtatatatatgtgtgtgtatatatgtgtat
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395799 60 + 50890351 TTAtgtgtgtgtgtgtgtatatatatgtgtgtatatatatgtgtgtgtgtgtatatatat
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C
e panTro4.chr19                   59681472 16 + 63644993 I

a score=851757.000000
s hg38.chr19_GL949751v2_alt         744361 728 +  1002683 -------------------------TTTTTTTTAccctccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggtaagaaatgggaatctttgtaatgacctccagttccatccatgtggctgcaaatatcaggatgtttttctttctatggaagagtagtctccactatgcaaatgtaccacattctctctatccattcacccactgatgggcaggtaggttgactcctcatcttggctactgtgaagagtgctgcaccaatcatacgagtgcagatatcacttcgatatattgatttactttcctttggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagtttttcgtttgttg-ttttgtttttgtttttgagacagtttccctctgtgcccaggctggagtacaagtgatgtcatcttggctcattgcaacctctgcctcctgggttcaaatgattttcctgcctcagcctccctagtatcagggattataggcgcacgccaccatgcctggctactttttgttttttttagtatagatgcggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcccgcctcggtctcccaaagtgccgggattacaggcatgatccacctcacccaacctctttttagttctttaaaggacttccacacttt
s panTro4.chr19                   59681488 728 + 63644993 -------------------------tttgtttTATcctccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggtgagaaatgagaatctttgtaatgacttccagttccatccatgtggctgcaaatatcaggatgttattctttctatggatgagtagtctcctctatgcgaacgtactacattctctctatccattcatccactgatgggcaggtaggttgactccacatcttggctactgtgaacagtgctgcaccaatcatacaagtgcagatatcacttcgatacattgatttactttcctttggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagtttttcgtttgttg-ttttgtttttgtttttgagacagtttccctctgtgcccaggctggagtacaagtgatgtgatcttggctcattgcaacctccacctcctgggttcaaatgattttcctgcctcagcctccctagtagctgggattacaggtgtacgccaccatgcctggctactttttggtttttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgtccgccttggtctcccaaagtgccgggattacaggcatgatccaccccatccaacctctttttagttctttaaaggacttccatacttt
i panTro4.chr19                   I 16 C 0
s ponAbe2.chr19                   56637136 716 + 60714840 -------------------------ttttttttAccctccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggggagaaataggaatctttgtaatgacttcgagttccatccatgtggctgcgaatgacaggatgttattctttctatggatgagtagtctccactgtgcgtatgtactacagt-tctctatccattcacccactgatgggcaggtaagttgactccacatcttggctacggtgaacagtgctgcaccaatcatacgagtgcagatatcacttcgatatattgatttcctttcctttggatataaacccagtagtgaaattgctggatactatgaa------------agtttttcgtttgttgtttttgtttttgtttttgagacactttccctctgtgcccaggctggagtacaagtgatgtgatcttggctcattgcaacctccgcctcctgggttcaaacgattttcctgcctcagcctccttagtagcagggattacaggtgcacacccccatgcctggctactttttcttttttttagtatagatggggtttccccatgttggctgagctgctctcaaactcatgacctcaactgaggtgcccgcctcggtgtcacaaagtgctgggattacaggcatgatccaccgcacccaacctctttttagttatttaaaggacttccatacttt
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    17085 711 -    21488 -------------------------tttgtttTAccctccacccttttctccctggcctctggtagccaccattctactctctcctttcatgagatccaccttttagctcttgtgtatgggtgagaaatgggaa--------------tccagttccatccatgtgggtgcaaatgacaggatgttattgtttctatggatgagtagtctccactgtgtg--tgtactacattctctctatcca-tcacccactgacgggcaggtaggttgactccacatcttggctactgtgaacagtgctggaacagtcatacgagtgcagatatcacttcgatatattgatttcctttcctttggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagtttttcgtttgttg-ttttctttttatttttgagacagtttccctctgtgcccaggctggagtaaaagtgatgtgatcttggctcattgcagcctccgcctcctgtgttcaaatgattttcctgcctcaccctccctagaagcaggcattacaggtgcacgccaccatccttggctactttttgtattttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcccgcctcggtctcgcaaagtgctgggattacaggcatgatccaccgcgcccaacctctttttagttatttaaaggacttccatgcttt
i nomLeu3.chr10_GL398297_2_random I 17 C 0
s papAnu2.chr19                   47716663 752 + 51301725 atatatgtgtgtacatatatatatatttttttaaccctcctcccttttcttcctggcctctggtagccaccattctactctctaccttcatGAGAT-CACCTTTTAGCTCCCGCCTATGGGTGAGAAATGGGAATCTTTGTAATGagctccagttccatccatgtggctgcaaatgTCAGGGTGTTATTGTCTCTATGGATGAGTAGTCTCCACTGTGTGTATGTACTACATTCTCtctatccattcacccactgagGGGCAGGTAGGTTGCCTCCAcgtcttggctactgtgaacagtgctggaCCAATCATACGAGCGCAGATATtacttcaatatactgatttcctttcctttggataaaaacccagtagtgaaattgctAGATACTATGAaagttctctttttagtttttcatttgttgtttttgttttggtttttgagacagtttccctctgtgcccaggttggagttcaagTGATGTGATCttgcctcattgcaacctccaccccctgggttcgaatgattttcctgcctcagcctccctagtagctgggattacaggtgcatgccaccatgcctggctactttttgtactttttagtacagatggggtttccccatgttggccaggctgctctcaaactcatG-CCTCAAGTGAGGTGCCCACCTCagtctcgcaaagtgctgggattacaggtgggagccactgcgcccaatctatttttagttatttaaaggAGTTCCATACTTt
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47395859 721 + 50890351 a-------------------------tTTTTTAAccttcctcccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcccgcctatgggtgagaaatggaaatgtttgtaatgagctccagttccatccatgtggctgcaaatgtcaggatgttattgtctctatagatgagtagtctccactgtgtgtatgtactacattctctctatccattcacccactgaggggcaggtaggttgtctccacatcttggctactgtgaactgtgctggaccaatcatacgagtgcagatatcacttcgatgtactgatttcctttcctttggatataaacccagtagtgaaattgctggatactatgaaagttctctttttagtttttcgtttgttgtttttgccttggtttttgagaccgtttccctctgtgcccaggctggagttcacgtgatgcgatc--------ttgcaacctccacctcctgggttcaaacgattttcctgcctcagcctccctagtagctgagattacaggtgcatgccactatgcctggctactttttgtactttttagtacagatggggtttccccatgttggccaggctgctctcaaactcatgacctcaagcgaggtgcccgtctcgctctcccaaagtgttgggattacaggcatgagccaccatgcccagcctctttttagtttcttaaagaacttccatacttt
i chlSab2.chr6                    C 0 I 42340
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=105951.000000
s hg38.chr19_GL949751v2_alt         745089 125 +  1002683 tctccgtaatggctgtactaatttacactcctaccaacaggataccaggattctcctttctctaacaccttgccagcatttcttttgcctgtcttgcagctaaaagcc------------------------------attttattttatttcat
s panTro4.chr19                   59682216 125 + 63644993 tctccgtaatggctgtactaatttacactcctaccaatagggtaccagggttctcctttctctaccaccttgccagcatttgttttgcctgtcttgcagctaaaagcc------------------------------attttattttatttcat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637852 155 + 60714840 tctccgtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctacccccttgccagcatttcttttgcctgtcttgcagctaaaagccattttattttattttattttattttattttattttattttattttat
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    17796 125 -    21488 tctccgtaatggctgtactgatttacactccttccaacagggtaccagggttctcctttctctaccaccttgccagcatttgttttgcctgtcttgcagctaaaagcc------------------------------attttattttattttat
i nomLeu3.chr10_GL398297_2_random C 0 T 15727
s papAnu2.chr19                   47717415 125 + 51301725 tctccataatggctgtactaatttacactcctaccaacagggTACCAGGGTTCTCCTTTCTCTACcaccttgccagcatttgttttgCCTGTCTTGCAGCtaaaagcc------------------------------attttattttattttat
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=235015.000000
s hg38.chr19_GL949751v2_alt         745214 290 +  1002683 -------------------------tttattttgagatggagtttcgctcttgtcacccaggct-gagtgcagtggtgcgatctcggctcaccacaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctggaattacaggcacacgccaccacgcccgactaatttttgtatttttagtagagacagtgtttctccatgtgggtcagactggtctcaaactcccgaccttatgagattcacccacctcaggctctcaaagttctaggatgacagacgtgagccaccacgcccggcc
s panTro4.chr19                   59682341 291 + 63644993 -------------------------tttattttgagatggagtttcgctcttgtcacccaggctggagtgcagtggcgcgatctcggctcaccgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctggaattacaggcacactccaccacgcccgactaattttcgtatttttagtagagacagcgtttctccatgtgggtcagactggtctcaaactcccgaccttatgagattcgcccacctcgggctctcaaagttctaggatgacagacgtgagccacctcgcccggca
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638007 291 + 60714840 -------------------------tttattttgagatggagtttcgctcttgtcacctaggctggagtgcagtggcgcgatctcagctcaccgcaacctccacctcccaggttccagtgattctcctgccccagcctcccgagtagctgggattacaggcacatgcaaccacgcccggctaatttttctatttttggtagagacagtgtttctccatgtgggtcaggctggtctcaaactcccgacctcaggagattcgcccacctcaggctctcaaagttctaggatgatagaggtgagccaccacgctcggcc
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2194 290 -    21488 -------------------------tttattttgagatggagttttgctcttgtcacccaggctggagtgcagtggcgcgatctcagctcaccgcaacctccatctcccaggttcaagtgattctcctgccttagcctcccaagtagctggaattacaggcacaggccaccacgcgcggctaatttttgtatttttagtagagacagtgtttctccatgtgggtcaggctggtctcaaactcccgacctcaggagatttgcccacctc-ggctctcaaagatctaggatgacagatgtgagccaccacgcccggcc
i nomLeu3.chr10_GL398297_2_random T 15727 C 0
s papAnu2.chr19                   47717540 315 + 51301725 tttattttattttattttattttattttattttgagatggagttgtgctcttgtcacccaggctggagtgcagtggcgcgatctcagctcaccgcaacctccacctcccgggttcaa-tgattctcctgcctcagcctcccaaatagctggaattacaggaatgtgccaccacgcccagcttatttttgcatttttagtagaaacagtgtttctcCACGTGggtcaggcgggtctcaaactcccgacctcaggtgattcacccacctcaggctctcaaagtgctaggatgatagacgtgagccaccacccccagcc
i papAnu2.chr19                   C 0 I 31728
e calJac3.chr22                   45773030 1697 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=52806.000000
s hg38.chr19_GL949751v2_alt         745504 102 +  1002683 taaaagccattttaatggggtgagatgaaaactcactttgattttaatttgtgtttctctgatgatgagtgatactgagcactttttcgtatgtggggaaat
s panTro4.chr19                   59682632 102 + 63644993 taaaagccattttaatggggtgagatgaaaactcactttgattttaatttgcgtttctctgatgatgagtgacactgagcactttttcgtatgccaggaaat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638298 102 + 60714840 taaaagccattttaatggggtgagatgaaaactcacttcgattttcatttgcatttctctgatgatgagtgatactgagcacttcttcatatgcggggaaat
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2484 102 -    21488 taaaagccattttaatggggtgagatgaaaactcactttgattttaatttgcatttctctgatgatgagtgatactgagcactttttcatatgcagggaaat
i nomLeu3.chr10_GL398297_2_random C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e papAnu2.chr19                   47717855 31728 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=611823.000000
s hg38.chr19_GL949751v2_alt         745606 780 +  1002683 ttcatgtcttttgctcctgtttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagttattaatcccatctcagatgcatagtttgcacatatttgctcccaatctgtgggttgtctcttcactttgttggtt-tatttttagcggtgcagaagttgcttagtttgaggtaatcccaatggtcta-tttttgcttcgattacttgtgttttgaaggtttaaaacaaaatgtcttccttcagacaaacgtcctggagcatttccccaatattttcttctacgtgtttcataggttcaggccttagactcacatctttaatccattttcatttga-tttttgtgtatagtgacaggcagaggtgcagtttcattcctctgcatgtcgatgtccaggtttccctgcactgtttattgaaaagactgtcctttcctgattgtgagttcttggcacctttgtcaaagtccattggatgggctgggcatggtggctgacacctgcaatttcagcactttgggagcccgaggtgggtggatcacctgaggccaagagttcaagattagtctggccaacgtgatgaaacatcgtctccactaaaaatataaaaattagctgagcatggtggtcagcacctgtaataccactactcaggagtttgaggcaagagaagtgattgaacccaggaggctgtggtggcagtgaaccgagattgcacctctgcactccagcctgggtgacagagcaagactccatctcaaaagaaaaacaa
s panTro4.chr19                   59682734 780 + 63644993 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagttattaatcccgtctcagatgcatagtttgcacatatttgctcccaatctgtgggttgtctcttcactttgttggtt-tatttttagcggtgcagaagttgcttagtttgaggtaatcccaatggtcta-tttttgcttggattacttgtgttttgaaggtttaaaacaaaatgtcttccttcagacaaatgtcctggagcatttccccaatattttcttctacgtgtttcacaggttcaggccttagactcacatctttaatctactttcatttga-tttttgtctgtggtgacaggtagcggtgcagtttcattcctctgcatgtagatgtccaggtttccctgcactgtttattgaaaagactgtcctttcctgattgtgagttcttggcacctttgtcaaagtccattggatgggctgggcatggtggctaacacctgcaacttcagcactttgggaggccaaggcgggtggatcacctgaggccaggagtacaagattagtctggccgatgtgatgaaacatcgtctccactaaaaatataaaaaatagctgagcatggtggtcagcacctgtaataccactactcaggagtttgaggcaagagaattgattgaactcaggaggctgaggttgcagtgaaccgagattgcacctctgcattccagcctgggtgacagagtgagactccatctcaaaagaaaaaata
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638400 781 + 60714840 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagttattaatcccgtctcagatgcatagtttgcacatatttactcccaatgtgtgccttgtctcttcacgttgttggtt-tatctttagtggcgcagaagttgcttagtttgatgtaatcccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaagtgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacgtgtttcataggttcagcccttagactcacatctttaatccattttcatttga-tttttgtgtatggtgacaggtagaggtgcagtttcattcttctgcatgtagatgtgcaggtttccctgcactgttgattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccagtggatgggctgggcatggtggctaacacctgcaattgcagcactttgggagaccgaggcaggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacatcgtctctactaaaaatacaaaaattagctgagcatggtggtcagcccctgtaataccactactcaagggtttgaggtgagaaaattgattgaacccaggaggctgaggttgcagtgaaccgagattgcaactctgcactccagcctgggtgacagagtgagactccatctcaaaagaaaaaata
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2586 782 -    21488 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttctttgagcttcttatatttctagttattaatcttgtctcagatgcatagtttgcatgtatttgctcccaatctgtgggttgtctcttcactttgttggtt-tatctttagcagtgcagaagttgcttagtttgatgtaaccccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaaatgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacatgtctcataggttcaggccttagactcacatctttaatccattttcatttgattttttgtgtatggtgacaggtagaggtgcagtttcattcctatgcatgtagatatccagttttccccgcactgtttattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccattggatgggctgggcatggtggctaacacctgcaattccagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacaccgtctctactaaaaatacaaaaattagctgagcatggtggtcagcacctgtaataccactactcgggagtttgaggcgagagaattgattgaacccaggaggctgagtttacagtgaaccgagattgcacctctgcactccagcctgggtgacagagcgagactctatctcaaaagaaaaaata
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47438920 778 + 50890351 ttcatgtcttttgctcattttttagttaaattctttgttttattgagttatgtgagcttcttatatttctagttataaatcccgtctcagatgcatagtttgcaattattggctcccattctgtgggttgtctcttcactttgttggttatttgttttgcagtgcagaagctgcttagtttgatataatccctgtggtctgttttttgctttgattacttgtgtttttgaagtattaaacaaaatgtcttttctcagacaaatgtcctgaagcatttccctaatatttccttctacaaatttcataggttcaggacttagactcatgtatttaatccatttggatttga-cttttctgaatggtaagaggtagaggtgcagtttcattcc-ctgcaaggagataacccgttttccccgcatcgtttattgaaaagactgtcctttcctgattgtaggttcttgacactttagtcaaaatgcattggattggctgggcatggtggctcacacctgcaatcccagcactttcagaggccaaggtgggtggatcacctgagaccaggagttcgaggcccgcctggccaacatagtaaaaccctgtctccactaaaaatgcaaaaattagctgagcatggtggtcagcgcctgtcataccactactcgagagtgtgaagcaagagaattgcttgaattcaggagacagaggttgctgtgagctgagattgcacctctacactccagcatgggggacagagcaagattccatctcaaaaaaaaga---
i chlSab2.chr6                    I 42340 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e papAnu2.chr19                   47717855 31728 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=1020742.000000
s hg38.chr19_GL949751v2_alt         746386 906 +  1002683 aaaatacattggaggtaaatgcatggattatatctgtgttattcattctgctccgttgttctatgtgcctttcttcatgccaacgtcatgctgtcttgcttactacagctctgtaacatattttgagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTAGCCGTCACATACAAAAATTACGGAAAAAAGGATCCCAGGACTCCCAGGGCCCAATATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCACTGAGTAGAGGACAGACACCCTCATTTCCTCACCTCTCTCCTGTCTCATGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTACAGAA-CCCTCTTATATCCGCTTTTGGAAACCTGGGGAGGTGGAAACCTTGGATTCAGGCGTTGACTCAGCATCTCACAGCTCTGACATTGTACGCCTGTCTTCTAC--CATCTCCAAACTCCAGATACTCCAACAGCGAAAGGGATCTGGACCCAAAACAGGGCTCTGTGAAATCTCTTAATCTCTCATTTTATGGAGCTGAGATCTCCTACAAGCTAGAAAAATGATTGGCAATCTGACATCCTTCTCAG-GAAAAATGCAATGTTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAGAGAGGGAAGGGTAGGGAACATTTGATGAGGGCGAGGTGTTT-TAGAGAAGTTCCACTTGCCCAGGAATGAATTACTGTTGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCTTTGCCTTAACAGAGAACGGAGCTCATGCACGC-----ACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGG
s panTro4.chr19                   59683514 905 + 63644993 aaaa-aaattggatgtaaatgcatagattatatctgtgttcttcattctgctccgttgttctatgtgcctttctttatgccaacatcatgctgttttgcttactacagctctgtaacatatcttgagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGCGTCACATACAAAACTTATGGAAAAAAGGATCCCAGGACTCCCAGGGTCCAACATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCACTGAGTAGAGGACAGACACCCTCATTTCCTCACCTCTCTCCTGTCTCATGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTACAGGA-CCCTCTTATATCCACTTTTGGAACCCTGGGAAGGTGGAAACCTTGGATTGAGGCGTTGACTCAGCATCTCACAGCTCTGACATTGTACGCCTGTCTTCTAC--CATCTCCGAACTCCAGATACTCCAACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTCATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAG-GAAAAATGCAATGTTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGACTTGAGAGAGGGAAGGGAAGGGAACATCTGATGAGGGCGAGCTGTTT-TAGAGAAGTTCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATAAAGCAACCCAGGCTGACTCAGCAGAGCAAGAGCCTTGCCATAACAGAGAACAGAGCTCATGCACGC-----ACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGG
i panTro4.chr19                   C 0 I 1745
s ponAbe2.chr19                   56639181 907 + 60714840 aaaaaccattggatgttaatgcatggattatatctgtgtacttcattctgctccattgttctatgtgcctttctttatgccaacgtcgtgctgttttgcttactacagctctggaatgtatttttagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGTGTCACATATAAAAATTATGGGAAAAAGGATCCCAGGACTCCCAGAGCCCAATATCAGATAACACAGTGTTGGCCATGAACCTACCTCAAAGATTTCCATTGAGTAGAGGACAGACACCCTCATTTCCTCACCTCTGTCCTGTCTCGTGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACGAAACCAAGCTCCAAAATCGGTGAGTACAGAA-CCCTCTTATATCTGCCTTTGGAAACCTGGGGAGGTGGAAACCTTGGATTCAGGCATTGATTCAGCATCTCACAGCTCTGACATTGTGCACCTGTCTTCCAC--CATCTCCGAACTCCAGATACTCCAACAGCGCAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTAATCTCTAATTTGATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAGAAAAAAATGCAATATTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAGAGCGGGAAGGGAAGGGAACATCTGATGAGGGCGAGGTGTTT-TAGAGAAGTGCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAAGCAACCCTGGCTGACTCCGCAGAGCAAGAGCCTTGCCATAACAGAGAACAGAGCTCATGCACGC-----ACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     3368 907 -    21488 aaaaaccattagatgtaaatgcgtggattatatctgtgttattcattctgctccattgttctatgtgcctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacatatttttagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGCATCACATATAAAAACTATGGAAAAAAGGATCCCAGGACTCCCCAGGCCCAATATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAGGACAGACACTCTCATTTCCTCACCTCTCTCCTGTCTCGTGTTCTAGGAAACCCTTCAAACAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGAAACCTGGGGAGGTGGAAGCCTTGGATGCAGGCGTTGACTCAGCATCCCACAGCTCTGACATCGTGTGCCTGTCTTCAAC--CATCTCTGAACTCCAGATACTCCAACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTAATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAGGAAAAAATGCAGTGTTTGTTCTGCCTTCATTCCAAACTGGAGGATAAATTCCTGAGGGCTTGAGAGAGGGAAGAGAAGGGAACATCTGACGAGGGAGAGGTGTTT-TAGAGAAGTTCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACACAGAACAGAGCTCATGCACGT-----ACACTTCGACTCACTGACTCATTCGGCCGCGGCCCCATGTTCAGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47749583 904 + 51301725 AAAGTCCATTGGATGTAAATAGGTGGATTACATCTGTGTTCTTCATTCTGCTCCATTGTTTTATGTGCTTTTCTTTATGCCAGTGTcatactgttttgtttactacagctctgtaacatatttttaagtcaggtagtgtgatactcCTGTTTTCTCCTTATACCTTAAAGTCTCAAGATAGTGGGCATCACGTACAATGATTATGGAGAAGGGGATGCCAGGACTCCCAGAGCCCAATATTAGATAACAGAATGTTGGCCAGGAACCAACCTCAAAGATGTCCTTTGAGTAGAACACAGGCATCCTTATTTCCACACCTCTCTCCTGTCCCATGTTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACTGAACCAAGCTTCAAAACTGGTAAGTGAAGGATCCCTCTTACCTCTGCTTTTGAAAACCCAGGGAGGTCGAAGCCTTGGATTCAAGCGTTGGCTCAGCACCTCCCAGCTCTGTGATTGTGGGcctgtcttcctc--tgtctctgaaCCCCAGACACTCCAACAACGAAAGGGAtctgagcccagcacagagcTCAGTGAAATCTCTTAACCTCTGATTTTCTGCTGCTGAGACCT----CAGGGTAGAAGGATGAGTGCAAATCAGACGTTGTTCTCGG-GATAAATGTGGTGTTTGTTCTGCCTGCATTCCTAACCAAAGGACAAATGCCTGGGGGCTTGAaagggggaaggaaagggaacATTT-TTGAGGGTGGGGTGTTTGTAGAGAAGTTCTACTTGCCAAGGAATGAGCTCCTGTCTGTCATGATCCAACCTTGGTTGACTTAGCAGAGCAAGAGCCTTGCAGTAAGAGAGAACGGAGTTCATCCACGCACATGACACTTCCACTTACTGGC----TCAGGCACTGCTCCATGCTCAGG
i papAnu2.chr19                   I 31728 C 0
s chlSab2.chr6                    47439698 898 + 50890351 -aaagccattggatgtagacgcatagattatatctgtgttcttcattttactccgttgttctatgcacttttctttatgccaacgtcatgctgttttgtttactacagctctgcaacatatttttaagtcaggtaatgtgatgttcctgttttCTCTCTATATCTTAAAGTCTCGAGACATTGGGTAACACATACAAAAATTATGGAGAAGAGGATCCCAGGACTCCCAGAG-CCAGTGTTGGATAACAGAGTGTTGTGCATGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCTCATTTCCTCACCTCTCTCCTGTCTC-TATTCTAGGAAACCCTTCACGTAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCAGTGAGTAAAGAATCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTggaagccttggagtcaagccttggctcagcacctcccagcgc--tggttgtgggcctgtcttccaccatctctctgaactccagacact-caacagcaaaagggatCTTGGCCCAGCACAGGGCTCAGTGAAGTCTCTTAATCTCTAATTTTCTGTAGCTGAGACCTCCTACAAGCTGAAAGAATGATTGCAAATCTGACATCCTTCTCAG-GAAAAATGCAG----TGCTCTCCCTGCATTCCTAACTGGAGGATCAATTCCTGGGGGCTTGAAAGAGGGAAGGGAAGGGAACATCTAATGAGGGTGAGGTGTTT-TACAAAAGTTCCACTTGCCAAGGAATGAACTCCTGTGGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTG-AGTAACAGAGAACAGAGCTCATGCACGC-----ACACTCCGACTCACTGACTCATTCAGCCATGGCCCCATGCTCAGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=4332.000000
s hg38.chr19_GL949751v2_alt         747292 5 +  1002683 CCGTG
s ponAbe2.chr19                   56640088 5 + 60714840 CTGTG
i ponAbe2.chr19                   C 0 I 1738
s nomLeu3.chr10_GL398297_2_random     4275 5 -    21488 CTGTG
i nomLeu3.chr10_GL398297_2_random C 0 I 1592
s papAnu2.chr19                   47750487 5 + 51301725 CTGTG
i papAnu2.chr19                   C 0 I 382
s chlSab2.chr6                    47440596 5 + 50890351 CTGTG
i chlSab2.chr6                    C 0 T 40624
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C
e panTro4.chr19                   59684419 1745 + 63644993 I

a score=0.000000
s hg38.chr19_GL949751v2_alt         747297 12 +  1002683 GAAAAGGCAATt
e ponAbe2.chr19                   56640093 1738 + 60714840 I
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     4280 1592 -    21488 I
e chlSab2.chr6                    47440601 40624 + 50890351 T
e papAnu2.chr19                   47750492 382 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C
e panTro4.chr19                   59684419 1745 + 63644993 I

a score=122804.000000
s hg38.chr19_GL949751v2_alt         747309 145 +  1002683 cccagcactgcaggaggccaaggcgggtggatcacttgaagtcaggagttccagaccagcctggccaaaatggtgaaaccctgtctctatgaaaaatacaaaaattagccgagcatggtggtgcatccctgtaatcccagctcct
s panTro4.chr19                   59686164 145 + 63644993 cccagcactgcaggaggccaaggcgggtggattccatgaagtcaggagttccggaccagcctggccaacatggtgaaaccctatctctactaaaaatgcaaaaattagccgagcatggtggtgcatccctgtaaccccagctcct
i panTro4.chr19                   I 1745 C 0
s ponAbe2.chr19                   56641831 145 + 60714840 cccagcactgcaggaggccaaggcgggtggattccatgaagtcaggagttcgagaccagcctggccaacatggggaaaccctatctctactaaaaatacaaaaattagctgagcatggtgatgcatccctgtaatcccagctcct
i ponAbe2.chr19                   I 1738 C 0
s nomLeu3.chr10_GL398297_2_random     5872 145 -    21488 cccagcactgcaggaggccaaggctggtggattccatgaagtcaggagttcgagaccagcctggccaacatggggaaaccctatctctactaaaaatacaaaaattagccgagcatggtggtgcatccctgtaatcccagctcct
i nomLeu3.chr10_GL398297_2_random I 1592 I 987
s chlSab2.chr6                    47399977 145 + 50890351 cccagcactgcaggaggccaaggcaggtggattccatgaagtcacgagttcaagaccagactggccaacatggtgaaaccctatctctaataaaaatacaaatattagctgagcatggtggtgcatgcctgtaatcccagctcct
i chlSab2.chr6                    T 40624 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e papAnu2.chr19                   47750492 382 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=2403.000000
s hg38.chr19_GL949751v2_alt         747454 6 +  1002683 actctt
s panTro4.chr19                   59686309 6 + 63644993 attctg
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56641976 6 + 60714840 actctg
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47400122 6 + 50890351 actctg
i chlSab2.chr6                    C 0 I 64203
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     6017 987 -    21488 I
e papAnu2.chr19                   47750492 382 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=107880.000000
s hg38.chr19_GL949751v2_alt         747460 238 +  1002683 gaggatgaagcaggagaacgacttcaacccaggaggtggaggttgcagtgagtggagattgcatcactgcactccagcctgggtgacacaaggagactccgtctcaaaaaataaaaataagaaaTGCATAAATATAATAAAACACACACGAATGACAAAGGCACCTGAATTCCAATCATCATTTTTGTATTTCTCTATAATTACTTCTTTGATCCTTTGTCTTATCCATTAGGCAATG
s panTro4.chr19                   59686315 238 + 63644993 gaggatgaagcaggagaatgacttcaacccaggaagtggaggttgcagtgagtggagtttgcatcactgcactccagcctgggtgacacaaggagactccatctcaaaaaataaaaataagaaaTGCATAAATATAATAAAACACACACGAATGACAAAGGCACCTGAATTCCCATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCTATC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56641982 238 + 60714840 gaggatgaagcaggagaatgacttcaacccaggaggtggaggttgtagtgagtagagattgcatcactgcactccagcctgggcgacacacggagactctgtctcaaaaaataaaaataagaaaTGCATAAATATAATAAAACACACACGAATGACAAAGGCACCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCAATC
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47464331 237 + 50890351 gaggctgaagcaggagaatggcttccacccgcgaggcagaggtttcagtgagccgagatcgc-tcattggactacaccctgggtgacagagtgagactctatctcaaaaaataaaaatacaaaaCACATAAATCTAATATAGCATACAGGAATGACAAAGGCACTTCAATCCCAATTATCATTTTTCTGTTTCTCTATAACGACTTCTTTGATCCTTTATCTTATTCATTAGAAAATC
i chlSab2.chr6                    I 64203 T 21432
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     6017 987 -    21488 I
e papAnu2.chr19                   47750492 382 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=50112.000000
s hg38.chr19_GL949751v2_alt         747698 105 +  1002683 AGCCTAAAACCTCTTCCGTATTTGGCTTTCTGTGAGCATGAGACCATATAGAAAATGTGAAAGCCTGCTGAATCCTCCAGCACAGATCGTGGAATAGAGAAAGTG
s panTro4.chr19                   59686553 105 + 63644993 AGCCTAAAACCTCTTCCCTATTTGGCTTTCTGTGAGCATGAGATCACATAGAAAATGTGAAAGCCCGCTGAATCCTCCAGCACAGATCCTGGAATAGAGAAAGTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56642220 105 + 60714840 ACCCTAAAACCTCTTCCCTATTTGGTTTTCTGTGAGCATGAGATCATATAGAAAATGTGAAAGCCCGCTGAATCCTCCGGCACAGATCCTGGAATAGAGAAAGTG
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47443136 104 + 50890351 AGCCTAAAACCTCTTCCCTATTTGACTTTCTGTGAACATGAGATCATACAGAAAATATGAAAGCCC-CTGAATTCACCAGCACAGGTCCAGGAATAGAGAACGTG
i chlSab2.chr6                    T 21432 I 2
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     6017 987 -    21488 I
e papAnu2.chr19                   47750492 382 + 51301725 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=442686.000000
s hg38.chr19_GL949751v2_alt         747803 642 +  1002683 CTCTGTTCATCACAAA-AAAAACTTGCCCTCTCACTCAAATCCCCCACTTCACCCCTACTTCCAATCACCTGTGGAGATTCAGATAGACCATGGGGAGGTAAACATTAATACTCCTTGGAGTGAGTCCAGATCTTGGAATGAGAGATCAGCACCAGCACTAGCTCCTGCTCC-CCTTTCCTACTAATTCACAGGAGGACA------GGTGGTATTGAAGCAATAGATGGTGGAGGGGGTGGTCCTTCCCCCAGCCTCTCAGGTAGAACAGCAGCCTAACATGTGTCTCCCGAGATCACAAAGAGTAGGACGTTTCACAGGGGCTTCAACACGATTTCCTGGCTGTTGGACATAAGATAACTCTATTTCGCTTTTTT--ATCTTGATTTCACTTTTGTTTCCTTTCCTTGGAGAACGCAAGTTGTTTGACTCAAGAATGCTGTGGATGTAGAAATCCTAAAGCACATTCGCTGTGTGTCAATCCCAGTGCAGTCTTCCCAGAAAAGACCCTaaacacctcctagactgcacctgggcctacgccaattcctatcactcaccgtcactccagggagacagaacacacagagaatacgttacat-aggcaggttcattactaacagataagcagcgagtgaaaacagaagcctaca
s panTro4.chr19                   59686658 641 + 63644993 CTCTGGTCATTGCAAACAAAAACTTGCCCACTCACCCAAATCCCCCACCTCACCCCTAATTCCAATCACCTGTGGATATTCAGATAGGCCATGGGGAGGTAAACA---ATACTCCTTGGTGTGAGTCCAGATCTTGGAATCAGAGATCAGCGCCAGCACTAACTCCTGCTCC-CCTTCCCTACTAATTCACAGGAGGACA------GGTGGTATTGAAGCAATAGATGGCCGAGGGGGTGGTCCTTCCCCCAGCCTCTCGGGTAGAACAGCAGCCTAACATGTGTCTCCCAAGATCACAAAGAGTAGCACGTTGCACACGGGCTTCAACACTATTTCCTGGACGTTTGACATAAGAGAATTCTACTTCGCTTTTTTTAATCTTGATGTCACTTTTGTTTCCTTTTCTTGGAGAATACAAGTTGTTTGACTCAAGAAAGCTGTGGATGTAGAAATCCTAAAGCACATTCGCTGTGTATCAATCCCAGTGCAGCTTTCCCAGAGAAGACTCTAAACACCTCCTGGACTGCACCTGGGCCTATGCCAATTCCTGTCACTCACCGTCACTC-AGGgagacagaacacacagagaacacattacac-aggcaggttcattactaacagataagcagcgagtgacaacagaaacctaca
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56642325 643 + 60714840 CTCTGTTCATAGCAAA-AAAAAATTGTGCTCTCACCCAAACCCCCCACCTCAGCCCTACTTCCAATCACCTGTGGAGATTCAGATAGACCATGGGGAGGTAAACATTAATACTCCTTGGAGTGAGTCCAGATCTTGAAATCAGAGATCAGCGCCAGCACTAGCTCCTGCTCC-CCTTTCATACTAATTCACAGGAGGACA------GGTGGTATTGAAGCAGTAGATGGTGGAGGGGGCGGTCCTTCCCCCAGCCTCTCGGGTGGAACAGCAGCCTAACATGTGTCTCCTGAGATCACAAAGAGTAGCACGTTTCACACGGGCTTCAACACTATATCCTGGCTGTTTGACATAAGAGAATTCTACTTCGCTTTTTTT-ATCTTGATTTCACGTTTGTTTCCTTTTCTTGGAGAATGCAAGTTGTTTCACTCAAGAATACTGTGGATGTAGAAATCCTAAAGCACATTCGCTATATATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGTACTGCGCCTGGGCCTATGCCAATTCCTATCACTCACCGTCACTCAAGGgagacagaacacacagagaatacattacat-aggcaggttcattactaacagataagcagtgagtgacaagagaagcctaca
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47750874 636 + 51301725 CTATGTTCATGGCA---TAAAACTTGCCCCCTCACCCAAATCCCCCACCTCACCTCTACTTCCTATCACATTAAGAGACACAGATAGACCGTGGGAAGGTAAAAACTAATATTCTTTG----GAGTTCAGATCTTGGACTCAGAGACCAGCATCAGCACCATCTCCTGGTCA-CCTTTTATACGAATTCACAGAAGGACA------GGTTGTACCAAGGCAATAGATGATGGAGGGGGTTGTCCTTCCTCCGGACTCTCAGGTAGAACAGCAGCCTAATATAGGACTCCCGAGATCACAAAAAGGAGCCCGCTCTTCACGAGCTTCATCATTATTTCCTGGCTGTTTGATATATTTCAGTTCTACTTCACTGTTTTG-ATCTTGATTTCACTTT--ATGCCTTTTCTTGCCAAAAATAATGTGTTTGAGTCAAGAGGGTTGTGGCCGTAGAAATTGTAAAGCACATTCACTGAGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGTACTGCACCTGGGGCTATGCCAGTTTCTATCACTCACGGTCACTCCAGGGAGACAAAACACACAGACAATACATGACATAAGGTGGGTTCATTACTAATACATAAGCAGCAACTGACAACAGAAGCCTACA
i papAnu2.chr19                   I 382 C 0
s chlSab2.chr6                    47443242 642 + 50890351 CTCTGTTCATTGCA---AAACACTTTCCCCCTCACGCAAATCCCCCACCTCACCCCAACTTCCAATCACCTGTGGAGATTCAGATAGACCATGAGGAGGTAAACACTAGTACTCCTTAGAGTGAGTTCAGATCTTGGAATCAGAGATCAGCACCAGCACTAGCTCCTGCCCCTCCTTTCCTACTAATACACAGAAGGGCAACAGATGGTGGAGGTGAAGCAACAGATGGTGGAGGACCTTGTCCTTCCCCCAGACTCTCCGGCAGAACAGCAGCCTTATATGTGTCTCCCGAGATCACAAAGAGTAGCACATTTCACACGCGCTTCATCATTATTTCCTGGCTGTTTGACATAAGAGAA------TTTGCTTTTTTG-ATCTTGATTTCACTTTTGTTTCCTTTTGTTGGAGAATATTTGTTGCTTGAGTCAAGAATGTTGTGAATGTAGAAACTGTAAGGCACATTCACTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGTactgcacctggggctatgccagtttctgtcactcaccatcactccagggagacagaacacacagagaatacatgacat-aggcaggttcattcctaacagataaccagcaagtgactacagaaacctaca
i chlSab2.chr6                    I 2 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     6017 987 -    21488 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=24400.000000
s hg38.chr19_GL949751v2_alt         748445 19 +  1002683 tttcaatgtgagccagtcc
s panTro4.chr19                   59687299 19 + 63644993 tttcaatgtgagccagtcc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56642968 19 + 60714840 tttcaatgtgagccagtcc
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     7004 19 -    21488 tttcactgtgagccagtct
i nomLeu3.chr10_GL398297_2_random I 987 C 0
s papAnu2.chr19                   47751510 19 + 51301725 TTTCAATGTGAGCCAGTCC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47443884 19 + 50890351 tttctatgtgagccagtcc
i chlSab2.chr6                    C 0 T 13290
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=175030.000000
s hg38.chr19_GL949751v2_alt         748464 144 +  1002683 ctcaaggctcagaaaagctgctcgggacatatgga-gtcaccccatttgcagtgtagctggggg-aagccagaaagcagcccagcctgggttttgtaccctggagccacaggaagcactcagctaaagcactgcatgacgtcctcc
s panTro4.chr19                   59687318 145 + 63644993 -tcaaggctcagaaaagctgctcgggacatatggaagtcatcccatttgcagtgtagctggggggaagccagaaagcagcccagcctgggttttgtaccctggagccacaggaagccctcagctaaagcactgcatgacgtcctcc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56642987 144 + 60714840 ctgaaggctcagaaaagctgctccggagatatgga-gtcatcccatttgcagggtagctggggg-aagccagaaagcagcccagcctgggtgttctaccctggagccacaggaagcactcagctaaagcactgcatgacatcctcc
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     7023 144 -    21488 ctcaaggctcagaaaagctgctcgggatatatgga-gtcaccccatttgcagtgtagctggaag-aagccagaaagcagcccagcatgggttttgtaccctggagccacaggaagcactcagctaaagcactgcatgacatcctcc
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47751529 144 + 51301725 CCCAAGGCTCAGAAAAGCTGCTCGGGACATATGGA-GTCACCCCATTTGCACTGCAGCTGGGAG-AACCCAGAAAGCAGCCCGGCCTGGGTTTTGTACCCTGGAGCCACAGGAAGCACTGAGCTAAAGCACTGCATGGCGTCCTCC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47430613 144 + 50890351 cccaaggctcagaaaagctgcccgagacatacgga-gtcaccgcatttgcactgcagctgaggg-aacccagaaagcaacccagcctgggttttgtaccctggagctacaggaagcactgagctaaagcactgcatggtgtcctcc
i chlSab2.chr6                    T 13290 I 13147
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=793622.000000
s hg38.chr19_GL949751v2_alt         748608 725 +  1002683 tccaggaagaacaggaagacagcccaggctgctctgggacgttcctcctgatctcaggacgttgctgtcttagtccatttttg---------------------------ttgctct--------------------------------------------------aaaggaacacttgagcctgggcaacttctaaagaaaagagattggtttgcctcaccgttctgcaggctgtactggaagcatggcaccagcatctatttctcgtgatggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgcagagaccacagagatcacacggcaagagagggagcaagggggagggggagcgatggagcttccaagttcttttgaacaaccagctctccaggaa-ctaatagagggggaactagctaaccccgtctccttgggacagcattgatctgttcatgatggatccacctccatgacccaaacacctctcaagaggcccaacctcccacaatgggggtgaaatttcaatgtgaggtttgaaggggtcaaacatctcaactaaagtagttgtgtcctcagcacattctatggttactttgagagctataactgagaaagcaggagaaagctgggtctcccgccatctgggtgcttgtcctAAAGAGGTGTTTTACGTGGTTACCTGTCAATCAAGAAATGCGAGACAATTCATAAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCATCTTCTTCCAGGTAACCCAAGACACCTGCACG
s panTro4.chr19                   59687463 724 + 63644993 tccaggaagaacaggaagacagcccaggctgttctgagacattcctcctgatctcaggacgttgctgtcttagtccatttttg---------------------------ttgctct--------------------------------------------------aaaggaacacttgagcctgggtaacttctaaagaaaagagattgctttgcctcaccgttctgcaggctgtactggaagcacggcaccagcagctatttcttgtgatggcctcaggctgctcccattctgacagaagggaaggagggtctgtctgtgcagagaccacagagattacacatcaagagagggagcaagggg-agggggagcaatggagcttccaagctctttttaacaaccaggtctccaggaa-ataatagagggggaacttgctaaccccgtctccttgggacagcattgatctgttcatgatggatccacctccatgacccaaacacctctcaagaggcccaacctcccacactgggggtgaaatttcaatgtgaggtttgaaggggtcaaacatctcaactaaagtagtagtatcctcagcacgttctatggttactatgagagctataactgagaaagcaggagaaagctgggtcTCCCTCCATCTGGGTGCTTGTCCTAAAGGGGTGTTGCATGTGGTTACCTGTCAATCAAGAAATGTGAGACAATTCATAAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCCTCTTCTTCCAGGTAACTCCAGACACCTGCACG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56643131 723 + 60714840 tctaggaaaaacaggaagacagcccaggctcttctgggacattcctcctgatctcaggatgttgctgtcttagtccatttttg---------------------------ttgctat--------------------------------------------------aaaggaacacttgagcctgggtaacttctaaagaaaagagatttgtttgcctcacagttctgcaggctgcactggaagcatggcaccagcatctatttcctgtgacggcctcaggctgctcccactctggcagaaggggaggagggtctgtctgtgc--agaccacacagatcacacggcaagagagggagtaagtgggagggggagcgatggagcttccaagctctttttaacaaccagctctccaggaa-ctaacagagggggaacttgctaaccccgtctccttggaacagcattgatctgttcatgatggatccacctccatcacccaaacacctcccaagaggcccaacctcccacactgggagttaaatttcaatgtgaggtttgaaggggtcaaacatctaaactaaagtagttgcatcctcagcacattctatggttactatgagagctataactgagaaagcaggagaaagctaggtctcccgccatctgggtgcttgtcctAAAGAGACGTTGTATGTGGTTACCTGTCAATCAACAAATGCGAGACAATTCATAAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCGTCTTCTTCCAGGTAACCCCAGACACCTGCACG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     7167 802 -    21488 tctaggaagaataggaagacagcccaggctgttctgggacattcctcctgatctcaggacattgctgtcttagtccattttTgggaggcggagcttgcagtgagccctgattgcgccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaaaagaaCacttgagcctgggtaacttctaaagaaaagagatctgtttgcctcacagttctgcaggctgtactggaagcatggcaccagcatctatttcctgtgacggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgcagagaccacagagatcacagggcaagagagggagcaagggggagggggagcagtggagcttccaagctctttataacaaccagctctccaggaa-ctaatagagggggaacttgctaaccccgtctccttgggacagcattgatctgttcatgatggattcactgccatgacccaaacacctcccaagaggcccaacctcccacaatgggggttaaatttcaatgtgaggtttgaaggggtcaaacatctaaactaaagtaGTTGTATCCTCAGCACTTCCTATGGTTACTATGAGAGCTATAACTGAGAAAGCAGGAGAAAGCTGGGTCTCCCACCATCTGGGTGCTTGTCCTAAAGAGACACTGTATGTGGTTACCTGTCAATCAAGAAATGCGAGACAATTCATAAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCATCTTCTTCCAGGTAACCCCAGACACCTGCACG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47751673 716 + 51301725 TCTGGCACGAACAGGAAGACAGTCCAG-CCGTTCTGGGACATTCCTCCTGATCTCAGGACGttgctgtcttagtccatttttg---------------------------aGGATGT--------------------------------------------------GAAAGAACATTTGAGCCTGGGTAACTTCTACAGAAAACAGATTTGGTTGGTTCACGGTTCTGCAAAGTGTACAAGAGGCAGGACACCAGCATCTATTTCTGGCTGCGGCCTCAGGCTGCTCCTACTCTGGTAGAAGAGAAGG-GGGCTTCCATGTGCAGAGACCACCGAGAGCACACGGCAAGACAGGGAAAA------ACGGGGTGTGATGGAGCTTCCAAGCTCTTTTTAAGAACCGAGTCTCCAGAGTACTAATAAAGGGAGAA-TTGCTAACCCTGTCGTGTGGGGG-AACATTAATCTATTTATGatggatccacccccatgacccaaacacctcccaataGGCACCACCTCCCACACTCAGGGTTAAATTTCAGAGTGAAGTTTCGGGGGGTCAAATATCCATACGATAGCAGGTGTCTCATCCGCACATTCTGTAGTTATTACGAAAACTATAACTGAGAAAGCAGGAGAAAGCTGGGTCTCCCACCACGTGGGTGCTTGTCCTAAAGAGATGTTTTATGGGGTTGCCTGGCAACCAAGAAATGAGAGACAATCCACAAAGAGGAACTGCTATGGTGAGCTTCTCATTGGATTCCTATCTTCCTCCAGGTATCGCCAGACACCTGCCTG
i papAnu2.chr19                   C 0 I 278
s chlSab2.chr6                    47443904 725 + 50890351 tccaggaagaacaggaagagagcccagcccgttcgggcacgttcctcctgctctcaggatgttgctgtcttagtccatttttg---------------------------tggctct--------------------------------------------------gaaagaacacttgagcctgggtaacttctaaagaaaagagatttgtttggctcacagttctgcacactgtactggaagcatggaaccagcatctatttcctgtgacggcctaaggctgctcccactctggcagaagggaaggagggtctgtacgtgcagagaacaccgagatcacacggcaagggagggagcaaggggtagggggagagatggagcttccaacctctttttaataatcagctctccagaat-ctaatagagggacaacttgctaaccccatcatgtggggacagcattgatctattcatgatggatccacctccatgacccaaacacctcccaagaggcccaacctcccacactgggggttaaatttcaatgtgaggtttcaaggggtcaaacatctaaactaaagcagttgtatattcagcacgttccatggtgaccgtgagagctgtaaccgagagagcaggagaaagctgggtcTCCCGCCGTCGGGCCGCTTGTCCTAAGCAGACATTCCACATGGTTACCTGTCAATCAAGAAATGCGAGACAATCCATAAGAAGGAACTGCTATGATTAGCTTCTTATTGGAGTCTCTTCTTCCTCCAGGTAACCCCAGACACCTGCATG
i chlSab2.chr6                    I 13147 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=389127.000000
s hg38.chr19_GL949751v2_alt         749333 330 +  1002683 TTCTGATTGGGACCTCAGTGGtcatcatcctcttcatcctcctcctcttctttctcctTCATCGCTGGTGCTCCAACAAGAAAAGTAAGTCTCACGAAGGAGAGGCCAGAGAGCTCAGGGCCATGTGGGGA---------AGCAGGATGGGAGCACTCAGGTGTGTGTTCCTCACAGGTAGGATGGTCCCTGGCCCAAGGCAGCAGCCACAGAGGCAGGACTTTCTAGAGAGGGCACCAGACTCCCTGTCCCTGCTTTCAGCTCACAGACCGTTGCCTGATTCTGAACTGTATCCTCATGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGA
s panTro4.chr19                   59688187 330 + 63644993 TTCTGATTGGGACCTCAGTGGtcatcatcctcttcatcctcctcctcttctttctccttcATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAAAGCTCAGGGCCATGTGGGGA---------AGCAGGATGGGAACACTCAGGTGTGTGTTCCTCACAGGTAGGATGGTCCCTGGCCCAAGGCAGGAGCCACAGAGGCAGGACTTTCTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTATCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56643854 330 + 60714840 TTCTGATTGGGATCTCAGTGGTCATCATCCCCTTTGCCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTCACGAAGCAGGGGCCAGAGAGCTCAGGGCCGTGTGGGGA---------AGCAAGATTGGAGCACGCGGGTGTGTGTTCCTCACTGGCAGGAAGGTCTCTGGCCCAAGGCAGGAGCCTCAGAAGCAGGACTTTCTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCACATTCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     7969 328 -    21488 TTCTGATTGGGACCTCAATGGTCATCATCCCCTTCGCCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACGCAGCAGAGGCCAGACAGCTCAGGGCCATGTGGGGA---------AGCAGGATGGGAGCACGCAGATGTGTGTTCCTCACTGGCAGGAAGGTCTCTGGCCCAAGGAAGGAGC--CAGAGGCAGGGCTTTGTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTACCCTCACGTCCCCTGCAGCCACTCACATCCAAGAGAAGGTTCCATGA
i nomLeu3.chr10_GL398297_2_random C 0 I 3273
s papAnu2.chr19                   47752667 329 + 51301725 TTGTGATTAGGTACTCGGTGGCCACCATCTTCCTCAccatcctcctcttctttctcctttgttgcTGGTGCTCCGACAAAAAGAGTAAGTCTCACGAAGCAGAGGCCAGAGACCTCAGAGCCGGGTGGGGA---------AGCGGGATGGGAGCACGCAGGTGTGTGTTCCTCACCAGCAGGATGGTCTCGGGCCCCAGGCaggagccacagaggcagagctttcTAGAGAGAGCATCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGA
i papAnu2.chr19                   I 278 C 0
s chlSab2.chr6                    47444629 335 + 50890351 TTCTGATTGGGACCTCAGTGGTCATGATCCTCTTCACCA---TCTTCTTCATTCTCCTGCATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACGAAGCAGAGGCCACAGACCTAAGGGTCGTGTGGGGAGGAAGGATGAGGAGGATGGGAGCACGCAGGTGTGTGTTCCTCACCGGCAGCATGGTTCCCGGCCCAAGACAGGAGCCACAGAGGCAGGGCTTTCTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCCGATTCTCAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=98781.000000
s hg38.chr19_GL949751v2_alt         749663 122 +  1002683 CAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCAGAGAGATAGAATGTCTGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGC
s panTro4.chr19                   59688517 122 + 63644993 CAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCAGAGAGATAGAATGTCTGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56644184 122 + 60714840 CAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCAGAGAGATTGAGTGTCTGAGTCT-GCTGTTGGCAAGTGAGGGACCTCAGGC
i ponAbe2.chr19                   C 0 T 16397
s papAnu2.chr19                   47752996 123 + 51301725 CAGGCAGAAAGTGGGAGGCAGAATCACTGGGATGGGAACTGACAGCTCTTTATGGGATGGGTCCTTCAGCTCAGAGAGATAGAATGTCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCAGGC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47444964 123 + 50890351 CAGGCAGAAAGTGGGAGGCAGAATCACTGGGATGCCAATTGAGAGCCATTCATGGGAAGGGGTCTTGAACTCAGAGAGACAGAATGTCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCAGGC
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=22456.000000
s hg38.chr19_GL949751v2_alt         749785 35 +  1002683 ACCTATGGCCTCCCCCTGTTTGTTGGTATCTGCTT
s panTro4.chr19                   59688639 35 + 63644993 ACCTATGGTCTCCCCCTGTATGTTGGTATCTGCTT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56627909 35 + 60714840 ACCTACGGCCTCCCCCTGTTTGTTGGTATCTGCTT
i ponAbe2.chr19                   T 16397 I 16362
s papAnu2.chr19                   47753119 35 + 51301725 ACCTACGGCCTCCCGCTGTGTGTTGGGCTCTGCAC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47445087 34 + 50890351 AGCTACGGCCTCCC-CTGTGTGTTGGACTCTGCAC
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=335348.000000
s hg38.chr19_GL949751v2_alt         749820 424 +  1002683 ATGAAATGAGGACCCAGAAGTGCCCTCCGAGCTCTTTTGTTGACTTCCGTCTCCTACACATGCTGCTGTAATGGACCAAGAGCCTGCAGGGAACAGAACAGCGAATAGCGAGGTAGGTGCTCCTCGGCCCAGCCTCGTGGCTA--GTGTTATTCCCAAACAGTCCTGGAAAACGTGAGCACCCTCCCTCACTCAGGATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACGTACAGTTGGATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGAGTGTACACGGAACTTCCAAATGCTGAGTCCAGATCCAAAGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAG
s panTro4.chr19                   59688674 424 + 63644993 ATGAAATGAGGACCCAGAAGTGCCCTCCGAGCTGTTTTGTTGACTTCTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCAGGGAACAGAACAGTGAACAGGGAGGTAGGTGCTCCTCGGCCCAGCCTCGTGGCTA--GTGTTATTCCCAAAGAGTCCTGGAAAACGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATATGCACAGTTGAATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCTTTCTCAGAGGCCCAAGACACCCCCAACAGACACCAGCGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGATGGGGTCCTCTAGGGAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56644306 424 + 60714840 ATGAAATGAGGACCCAGAAGTGCCCTCCGAGCTGTTTTCTTGACTTCCGTCTCCTACAGATGCTGCTGTCATGGACCAAGAGCCTGCAGGGAACACAACAGTGAAGAGGGAGGTAGGTGCTCCTTGGCCCAGCCTCATGGCTA--GTCTTATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCATCGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCGTGAGCACCACAGTCTGGCCTTGAAGGGGTCCTCTAGGGAG
i ponAbe2.chr19                   I 16362 C 0
s papAnu2.chr19                   47753154 420 + 51301725 ATGAAATGATGACCCAGACGTGCCCTCCCAGCTGTTTTGATGACTTCCGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGTGGGGGACAGAACAGTCAACAGGGAGGTAGGtcctcctctccccagcctcaTGGATATAGTCTTATTCCCTACTAGTCCTGAAGAATGTGAGC-CCCTCCCTCACTCAACATTTCCCTCTCTGCAGGACTCTGATGAACCAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTTCCACACAGGGAAAAACCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCGTGTACATAGAGCTTCCAGATGCTGAGCCCAGATCG----TTGTCTCCTGCCAACGAGCACCACAGACAGGCCTGG-AGGGGTCTTCTAGGGAG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47445121 425 + 50890351 ATGAAATGAGGACCCAGACGTGCCCTCCCAGCTCTTTTGATGACTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCTGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTCCGCCCAACCTTGTGGATACTGCCTTATTCCCTAATAGTCCTGAAGAATGTGAGC-CCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACCCTGATGAACACGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTCTCACACAGGGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCGTGTACACGGAACTTCCAAATGCAGAATCCAGATCGAAAATTGTCTTCTACCCATGAGCACCACCATCAGGCCTTGCAGGGGTCTTCTAGGGAG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55635737 17115 + 59248254 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=125051.000000
s hg38.chr19_GL949751v2_alt         750244 116 +  1002683 ACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACAAATCTGAATGT
s panTro4.chr19                   59689098 116 + 63644993 ACAACAGCCCTGTCTCAAAACTGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACcacgaatctgaacat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56644730 113 + 60714840 ACAACAGCCCTGTGTCAAAACCAGCTTGCCAGCTCCCATGTACCGGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGCATTGCTCTTCCTCACACcacaaatct---cgt
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55652852 116 + 59248254 ACAACAGTCCTGTCTCAAAACCGGCTTCACAGCTCCAATGTGCCAGCAGCAGGAATCTGAAGGTGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACAT
i macFas5.chr19                   I 17115 T 16263
s papAnu2.chr19                   47753574 111 + 51301725 ACAacagccctgtctcaaaaccagcTTCACAGTTCCA--GTGCCAGCAGCTGGAATCTGAAATCTCGACTCTGCATCTTAGAGCATCGCTTTTCCCCACACCACAAATCTGCT---
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47445546 116 + 50890351 ACAACAGCCCTGTCTCAAAACCGGCTTGACAGCTCCAATGTACCAGCAGCAGGAATCCGAAGGTGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACAAATCTGAACGT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=392939.000000
s hg38.chr19_GL949751v2_alt         750360 356 +  1002683 GCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCacttgacccctgcccacctctccaaccttactggcttacttcctagt-ctacttgaggctgcaatcacactgaggaactcacagttccaaacatacaagaggctccctcttaacacggcacttagacacgtcctgttccaccttccctcatgctgttccacctcccctcagagtatctttcagccttctgtcagcagtaaaact--------tatatattttt---ta--------------------------aaa-------taatttcaatgtagttttccctccttcaaataaacatgtctgccctca
s panTro4.chr19                   59689214 356 + 63644993 gcctctctcttgcttacaaatgtctaaggtccccactgcctgctgcagagaaaacacactcctttgcttagcccacaattctccatttcacttgacccctgcccacctctccaacctaactggcttacttcctagt-ccacttgaggctgcaatcacactgaggaactcacaattccaaacatacaagaggctccctcttaacgcagcacttagacacgtgctgttccaccttccctcatgctgttccacctcccctcagactagctTTCAGCCTTCTGTCAGCAGTAAAACttata----tatatattttt---ta-------------------------------------aatttCAATGTAGTTTTCCCTCCTTGAAATAAACATGTCTGCCCTCA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56644843 397 + 60714840 gcctctctgttgcttacaaatgtctatagttcccactgcctgctggagagaaaacacactcctttgcttagttcacaattctctatttcacgtgacccctggccacctctccagcctaactggcttacttcctagt-ctacttgaggctgcggtcacactgaggaactcacagttccaaacatacaagaggctcgctcttaacaaggcacttacgcacgtgctgttccaccttccctcatgctgttccacctttcctcagacaatctttcagccttctgtcatcagttaaatTAATAAATTTATAAATTTTC---CAGCCTTCCATCATCAGTGGAACTTATAAAATTTTTTGTGATTTCAATGTAGCTGTCTCCTCTTCAAATAAATATGTCTGCCCTCA
i ponAbe2.chr19                   C 0 I 52757
s macFas5.chr19                   55636705 356 + 59248254 GCCTCTCTCTTGCTTGCCAATGTCTAAGGTCCTCACTGCCTGCTGGAAAGAAAACACACTCCCTTGCTTAGCCCACAATTCTCCActtcacttgacccctgcccacctctccaaccta-ctggcttacttcctagtcctactggaggctgcagtcacactgaggaactcacagttccaatcatacaagaggctccgtcttaacatggcacttagactcatgctgttccaccttccctcatgctgttccacctcccctcAGACTATCTTTCAGCCTTCTGTCAACAGTGAAACT--------TATAAATTTTTAAAAA------------------------------------TAATTTCAATGTAGTTGCCTCTTCTTCAAATAAACATGTCTACCCTCA
i macFas5.chr19                   T 16263 C 0
s papAnu2.chr19                   47753685 356 + 51301725 GGCTCTGTCTTGCTTACCAATGTCTGCGGTTCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCACTTCACTTGacccctgcccacctctccaaCCTACCTGGCTTACTTCCTAGTCCTACTGGAGGCTGCAGTCACACTGAGGAACTCACAATTCCAAACATACAAGAGGCTCCCTCTTAACACGGCACTTAGATTCATGCTGTTCCACCTTCCCTCATGCTGTTCCACCTCCCCTCAGACAATTTTTCAGTCTTCTGTCATCAGTAAACCT--------TATAAaaattt-gtta------------------------------------tgatttctatgTAGCTCTCTCATCTTCAAATAAACGTGACTGTCCTCA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47445662 354 + 50890351 GCCTCTCTCTTGCTTACAAATGTCTAAGATCCCCACTGCCTGCTGCAGAGAAAACGCACTCCTTTGCTTAGCCCACAATTCTCCACTTCACTTGACCCCTGCCCACCTCTCCAACCTA-CTGGCTTACTTCCTAGTCCTACTGGAGGCTGTGATCACACAGAGGAACTCACAATTCCAAACATACAAGAGGCTCCCTCTTAACACAGCACTTAGACATGTGCTGTTCCACCTTCCCTCATGTTGTTCCACCTCCCCTCAGATTATCTTTCAGCCTTCTGTCAACAGTGAAACT--------TATAAATTTTT--TTA------------------------------------ACATTTCAACGTAGCTCTCTCCTCTTCAAATAAACACATCTGCCCTCA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=910.000000
s hg38.chr19_GL949751v2_alt         750716 1 +  1002683 t
s panTro4.chr19                   59689570 1 + 63644993 T
i panTro4.chr19                   C 0 C 0
s macFas5.chr19                   55637061 1 + 59248254 T
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47754041 1 + 51301725 T
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47446016 1 + 50890351 T
i chlSab2.chr6                    C 0 C 0
e ponAbe2.chr19                   56645240 52757 + 60714840 I
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=6712.000000
s hg38.chr19_GL949751v2_alt         750717 12 +  1002683 ggtttcggtaat
s panTro4.chr19                   59689571 12 + 63644993 GGTTTCGGTAAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56697997 12 + 60714840 GGTTTCGGTAAT
i ponAbe2.chr19                   I 52757 C 0
s macFas5.chr19                   55637062 12 + 59248254 GGTTTCAGTAAT
i macFas5.chr19                   C 0 T 1893
s papAnu2.chr19                   47754042 10 + 51301725 TCTATAGGTA--
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47446017 12 + 50890351 CCTTTAGGTAAT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=17812.000000
s hg38.chr19_GL949751v2_alt         750729 19 +  1002683 gggactcttttcttgccta
s panTro4.chr19                   59689583 19 + 63644993 GGGACTCTTTTCTTGCCTA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56698009 19 + 60714840 GTGACTCTTCTTTTGCCAA
i ponAbe2.chr19                   C 0 T 52752
s macFas5.chr19                   55635181 19 + 59248254 GTGACTCTTTTCTTGCCAA
i macFas5.chr19                   T 1893 C 0
s papAnu2.chr19                   47754052 16 + 51301725 ---ACTCtttttttGCCTA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47446029 19 + 50890351 GTGACTCTTTATTCACCAA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=4580.000000
s hg38.chr19_GL949751v2_alt         750748 7 +  1002683 agacttc
s panTro4.chr19                   59689602 7 + 63644993 AGGCTTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56645276 7 + 60714840 AAACTGG
i ponAbe2.chr19                   T 52752 C 0
s macFas5.chr19                   55635200 7 + 59248254 AAGTTTC
i macFas5.chr19                   C 0 I 1898
s papAnu2.chr19                   47754068 7 + 51301725 AAGTTTC
i papAnu2.chr19                   C 0 I 5
s chlSab2.chr6                    47446048 7 + 50890351 AAGTTTC
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=-3259.000000
s hg38.chr19_GL949751v2_alt         750755 2 +  1002683 c---a
s panTro4.chr19                   59689609 5 + 63644993 CGGTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56645283 2 + 60714840 T---G
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47446055 2 + 50890351 -CG--
i chlSab2.chr6                    C 0 I 3
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e papAnu2.chr19                   47754075 5 + 51301725 I
e macFas5.chr19                   55635207 1898 + 59248254 I
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=113162.000000
s hg38.chr19_GL949751v2_alt         750757 96 +  1002683 ttatcattaccatgtccacataaccccatctgttctccactgggttctcacccccggactctgagtttctggaagcagggtggagcctca-tttgtc
s panTro4.chr19                   59689614 97 + 63644993 TTATCATTACTATGTCCATATAATCCCATCTGTTCTCCACCGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAGAGTGGAGCCTCATTTTGTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56645285 96 + 60714840 TTATCATTACCATGTCCATATAACCCCATCTGTTCTCCACTGGGTtctcacccctggactctgagcttctggaagcagggtggagcctga-tttgtc
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55637105 95 + 59248254 TTATCATTACTATGTCCATGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGC-AGGTGGAGCCTGA-TTTGTC
i macFas5.chr19                   I 1898 T 126
s papAnu2.chr19                   47754080 96 + 51301725 TTATCATTACTATGTCCATATAACCCCATATGTTCTCCACTGGGTTCTCACCCCTCGACTCTGAGCTTTTGGAAGCAAGGTGGAGCCTGA-TTTCTG
i papAnu2.chr19                   I 5 C 0
s chlSab2.chr6                    47446060 95 + 50890351 TTATCATTACTATGTCCATATAACCCCATATGTTCTCCAATGGGTTCTCACTCCTGGACTCTGAGCTTCTGGAAGC-AGGTGGAGCCTGG-TTTCTG
i chlSab2.chr6                    I 3 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=199839.000000
s hg38.chr19_GL949751v2_alt         750853 254 +  1002683 tctgggactcctatttccatccaaagatgtagcacataggaggTTCCAAGGATCGTGAATCACATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAATCTGGCAGAGTCATTCCAAGATGAAACATTTGTAGAATCATAGGCCTTGTTAGTCTCAT---CTACACAGGGACACATATCAACACATCATCTTTCACACTATAAATATAcagtcactcctccatatctgtggggtttacagttctttattgaac
s panTro4.chr19                   59689711 253 + 63644993 TCTGGGACTCCAATTTCCATCCAAAGATGTAGCACATAGGAGGTTCCAAGGATCGCGAATCACATGAACAAGTGATATTCTTACTCTCTGCA-ACCTGGAAAGCTGGCAGAGTCATTCCAGGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCAT---CTCCATGGGGACACATATCAACATATCATCTTTCATACTATAAATATAcggtcactcctctgtatctgtggggtttacaggtctttattgaac
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56645381 257 + 60714840 tgtgggactccaatttccatctaaagatgcagcacataggaggtTCCAAAGATCGTGAATCGCATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCACGATGAAACATTTGCAGAGTCATAGGTCTTGTTAGTCTCATCTCCTCCACAGGGACACATATCAACACATCATCTTTCATACTATAAATATAcagtcactcctctgtatctgtggggtttacaagtgtttattgaac
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47754176 253 + 51301725 TCTGGAACTCCAATTTCCATCCAATGATGCAGTGCATAGGAGGTTCCAAGGGTCATGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAACATGAAACATCTGTAGAGTCATAGGCCTTGTTGGTCTCAT---CTCCACGGGGACACATGTCAACACATCATC-TTCATACTATAAATACACAGTCGCTCCTCCAGACCTGTGAGGTTTACAGGTGTTTGTTGAGC
i papAnu2.chr19                   C 0 M 1176
s chlSab2.chr6                    47446155 253 + 50890351 TCTGGAACTCCAATTTCCATCCAACGATGCAGCGCATAGGAGGTTGCAAGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCAA---CTCCACGGGGACACATGTCCACACGTCATC-TTCATACCATAAATACAcagtcgctcctccagacctgtggggtttacaggtgtttattgaac
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=129218.000000
s hg38.chr19_GL949751v2_alt         751107 282 +  1002683 cgagtataaatcaaaaatattcagagaaagtatccacagagttacaaaaagcagaactgtgttgaatggacacaaatgaagctgtgtgtaggctgcatcaggaattataagtaatctagagatgatttcatgtatacaggaggatgtgcataggttatttgcaaactctgtgccatttcatataagaggcttgagcatctacagattttggtatctgagtggagatctcgaaaccaatcacccacgaatagtgaaggatgaccgtatatgacttttatttct
s panTro4.chr19                   59689964 282 + 63644993 caagtataaatcaaaaatattcagagaaaatatccacagagtttcaaaaagcataactatgttgaatggacacaaatgaagctgtgtgtaggctgtattaggaattataagtaatctagagatgatttcatgtatacaggaggatgtgcatatgttatttgcaaactgtgttccatttcatataagaggcttgagcatctacagattttggtatctgagtggagatctcgaaaccaatcacccacgaatagtgaaggatgactgTATATGACTTTTATTTCT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56645638 281 + 60714840 caactataaatcaaaaatattcagagaatatatccacaaaatttcaaaaagcaaaactatgttgagtggacacaaatgaagcggtgtgtaggctgtatcaagaattataagtcatctacagatgatgtaatgtatacaggagtatgtgcatgggttatatccaaatgctgtgtcattttatgtaagaggcttgagcatctgcagattttggt-tctgagtggagatcctgaaaccaatcacccacgaatagtgaaggatgactgTATATGACTTTTATTTCT
i ponAbe2.chr19                   C 0 I 308
s chlSab2.chr6                    47446408 282 + 50890351 caactataaatcaaaaatattcagggaaaaaatccacaaagttccaaaaagcaaaactgtgttgaatggacacaaatggaatggtgtgtaggctgagtcaggaattataagtaatctagagatgatttcatgtacacagaaggatgagcatggattatatgccaacgctctgccattttatgtaagaggcttgagcacctgcagattgtggtatctgagtggagatcctgaaaccaatcacccacgaatagtgaagcacgactgTATCTAACTTTTATTTCT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e papAnu2.chr19                   47754429 1176 + 51301725 M
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=424945.000000
s hg38.chr19_GL949751v2_alt         751389 940 +  1002683 caaatttaaatataaatcataaaAAATGTAC---AACTAGATAAAAACTAAGAAGTGTTTTtatagtgtgag-------ttagatttattttttcctaggtataacccattggtttaatattatttattgagaagacattctatgccaccttaaaccacacggcagcctttgtcaactctaaagggactgtgtgtacacggatgtactttagacactg-tttctgctaaggggctctctgtgtccacactcttgatgatgctgcactttatgtagccttata-gaaccctttaaatttagtagccagagctctctaatttGTTATTATAGGCTAtttgc-------ttttt---tttcttgaggcggagtcttgctctgtcgcccaggctggactgcagtgacacaatctcagctcactgcaacttctgcctcccaggttcaagcgattctcatgcctcagcctcttgagtagctggcgttacaggtgcctgccaccaggcacggctaatttttggatttttagcagagacacggtttcactatattggccaggctgctctcaaactccttatctcagttgatccgcccacctcggcttcccaacgtgc-tgggGAAACTTGATTTTCTATAGCATTATGTTACTGGATATTTCTGTAAAATTT-AAAATGAGGGAGGGAGAGAGACAGACGGAAAACAAACTCCAGAGTTGGGACTCTGGAATCTTGGGTCATGAGACAAATTTTAGATTAAACTACAAAACTCCAGAATTTACAGG-TGGGGTTTTTACTGATAAAGTACAATTCTAAGATTGTAAATAATTGCATAATCCTTCCCTGGGAATTTAAATCATTTTAACTGGTTCTGCTGTAATACTAGAAATACAAGCATGAAAAATTCTAATGGTTTATTAGTGACAATGACTCTGAAAACATTAATAATACCTATTAGATATTTTGCATAT
s panTro4.chr19                   59690246 944 + 63644993 CAAATTTAAATATAAATCATAAAAAATGTAC---AACTAGATAAAAACTAAGAAGTGTTTTtatagtgtgag-------ttagatttattttttcctaggtgtaacccattggtttaatattatttattgtgaagacattctatgccaccttaaaccacacagcagcctttgtcaactaaaaagggactgtgtgtacgcggatgtactttagacactg-tttctgctaaggggctctctgtgtccacactcttgaggatgctgcactttatgtagccttata-aaaccctttaaatttagtagccagagccctctaatttgttattATAGGCTACTTGCTA---ttttttt---tttcttgaggcggagtcttgctctgtcgcccaggctggactgtagtggtgcaatctcagctcactgcaacctccgcctcccatgttcaagcgattctcgtgcctcagcctcttgagtagctggcatttcaggtgcctgccaccaggctcggctaatttttggatttttagcagagacacggtttcactgtgttggccaggctgctctcaatctcctcatctcagttcatccgcccacctcggcttcccaacgtgc-tgggGAAACTTGATTTTCTATAGCATTATGTTCCTGGATATTTCTGTAAAATTT-AAAATGAGGGAGGGAGAGAGACAGAGAGAGAGCAAACTCCAGAGTTGGGACTCTGGAATCTTGGGTCATGAGACAAATTTTAGATAAAACTACAAAACTCCAGAATTTACATG-TGTGGTTTTTGCTGATAAAGTACAATTCTAAGATTGTAAATAATTGCATAATCCTTCCCTGGGAATTTAAATCATTTTAACTGGTTCTGCTGTAATACTAGAAATACAAGCATGAACAATTCTAATGGTTTATTAGTCACAATGTCTCTGAAAACACTAATAATACCTATTAGATATTTTGCATAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56646227 956 + 60714840 caaatttaaatataCATCATAAAAAATGTACAATAACTAGATAAAAACTAAGAAGTGTTTTtatagtgtgagaataactttagatttattttttcctatgtgtaaccctttggtttaatgttatttattgagaagacgttctatgccaccttagaccacacggcagcctttgtcaaccataaagggactgtgtgtacacggatgtattttagacactgttttctgctaaggggttgtctgtgtccacactcttgaggatgctgcactttatgtagccttata-gaaccctttaaatttagtagccagagccctctaatttgttattATAGGCTATTTGCTA-----ttttt---tttcttgaggtggagtcttgctctgtcgcccaggctggactgcactggcgcagtctcagctcactgcaacctccgccttccaggttcaggtgattctcgcgtctcagcctcttgagtagctgacattacaggtgtgtgccacgaggcatggctaatttttgagtttttagcagagacacggtttcactatgttggccaggctgctctcaaactcctcatctcagttgatccgcccacctcggcttcccaacgtgcggggGGAAACTTGATTTTCTATAGCATTATGTTACTGGATATTTCTGTAAAATTTAAAAAGGAGGGAGGGAGAGAGACAGAGAGAGAGCAAACTCCAGAGTTGGGACTCTGGAATCTTGGGTCATGAGACAAATTTTAGATAAAACTACAAAAATCCAGAATTTACATGTTGTGGTTTTTGCTGATAAAGTACAATTCTAAGATTGTAAATAATTGCATAATCCTTCCCTGGGAACTTAAATCACTTTAACTGGTTCTGCTGTAATACTAGAAATACAAGCATGAAAAATTCTCATGGTTTATTAGTCACAATTACTCTGAAAACCTTAATAATACCTATTAGATATTTTGCATAT
i ponAbe2.chr19                   I 308 C 0
s chlSab2.chr6                    47446690 961 + 50890351 CAATTTTAAATATGAATCATAAAAAATTTACAACAAGAAGATAAAAAACAAGAAGTG-gtttatagtgtgagaatacgtatagatttatttttttctatgcgtaacgc-ttgggcccatgttatctatggagaagacattctattcctccttaaaccacacggcagtctttgtcaactctaacgggactgtgtgtgcacggatgtattttagacactgttttctgataaggggctctctgtgttcgctcttttgaggatgctgcacattatgtaggcttatacaaagccttaaaatttggtagctggagtcctttagtttCTTATTATAGGCTATTTGCTACGCtttttttatatttcttcaggcagagtctcgctctgttacccaggctggactgcagtggcacaatctcggctcactgcaacttccgcctcccaggttcaagcgattctcctgcctcagcctcttgagtagctggcatgacaggtgcccactgccaggcatggctaatttttgtatgtttagcagagacatggtttctctaagttggccagggaggtctcgaactcccgacctccgttgatccacccacctcggcttcccaaagtgctgggGGACACTTGATTTCCTACAGTATTATGTTACTGGATATTTCCACACAATTT-AAAATgagggaggcagagagacagagagagagcgaAC-CATGTGCTGGGACTCTGGAATCTCAGGTCATGAGACAAATTGTAGATAAAATGACAAAAATCCAGAATTGACATGTTGTGGGTTTTGCTGATAAAGAACAGTTCTAAGACTGTAAATAATTGCATAATCCTTCCCTGGGTATTTAAATCATTTAAACTGGTTCTGCTGTCATACTAGAAATACAAGCATGAAACATCCTAATGGTTTATTCGTCACAATTGCTCTGACAACGTTCATAATACCTATTAGATATTTTGCATAT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e papAnu2.chr19                   47754429 1176 + 51301725 M
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=374980.000000
s hg38.chr19_GL949751v2_alt         752329 478 +  1002683 TACACAGGAAGAAGAGTTTGAATCTCAGATAAAAACAATAGAAATACATGAAAAGTCTTTCATGTTAGCACAGATTTTAGGCATCTCGTGTTCGGGAGGTTGGATCTCAGACGTGTTTTGAGTTGGTCATAGTGAAGGACACTAGGTGTCAAATTCTAGCGAGAACAATTTCCAGGAAGCCGTGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAACATGTAAACTGCATGGGCAGGGCGCCAAATAACATCCTGTGCGCTGCTGAGCTGAGCTCGGTCGCGGCTGCCTGTCTGCTCCGGCAGCACCATGTCGCTCTTGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAAGCAATAGAGGGAGGGAGTGAGGGGATGGAGATCTGGGCCCAGAGGTGGAGATATAGGCCTGGAGGTGGAGTTA
s panTro4.chr19                   59691190 478 + 63644993 TTCACAGGAAGAAGAGTTTGAATCTCAGATAAAAACAATAAAAATACATGAAAAGTCTTTCATGTTAGCACAGATTTTAGTCATCTCATGTTTGGGAGGTTGGATCTGAGACGTGTTTTGAGTTGGTCATAGTGAAGGACGCGAGGTGTCAAATTCTAGTGAGAACAATTTCCAGGAAGCCGTGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAGCATGTAAACTGCATGGGCAGGGCGCCAAATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGTGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGTGTGTGTTGGTGAGTCCTTGAAGGGAATCGAGGGAGGGAGCGCTGGGGTGGAGGTCTGGACCTGGAGGTAAAGATATGGGCCTAGAGGTGGAGTTA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647183 477 + 60714840 TACACAGGAAGAAGAGTTTGCATCTCAGATAAAAACAATAAAAATACATGAAAAGTCTTTCACGTTAGCACAGATTTTAGGCATCTCGTGTTCGGGAGGTTGGATCCGAGACGTGTTTTGAGATGGTCATAGTGAAGGACGCGAGGTGT-GAATTCTAGTGAGAACAATTTCCAGGAAGCCATGTTCCGTTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTATGTCAGCCTCCCATGATGTGGTCAGCATGTAAACTGCATGGGCAGGGCGCCAAATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCACAGCCGCCTGTCTGCACAGAGAGCACCATGTCGCTCATGGTCGTCAGCATGGTGTGTGTTGGTGAGTCCTGGAAAGGAATAGAGGGAGGGAGTGCAGGGATGGAGATCTGGGCTCAGAGGTGGAGATATGGGTCTGGAGGTGGAGTTA
i ponAbe2.chr19                   C 0 I 61
s papAnu2.chr19                   47755605 475 + 51301725 tatacacggagaagag-ttgaaacacagataaaaacaacaaaaatacatgaaaagtctTTCTCGTCAGCACAGATTTTAGTCACCTCGTGTCCGGGAGGTTGGATCTGAGACGTGTTTTGAGCTGGTCATAGTGAAGGACACAAGGTGT-CAGTTCTAGTGAGAACAATTTCCAGGAAGCCATTTTCCACTCTTGAGTGAGCACCCGCTGCACCTCATGCAAGGTAGGAAGAGCCTGCGTACATCACCCTCCCATGATGTGGTCAGCACGTCAACTGCATGGGCAGGGCCCCAGATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAACACCATGTCGCTCATGGTCGTCAGCCTGGTGTGTGTTGGTGAGTCCTGCAAGGAAATCGGCGGAGGAAGCGCTGGggtggagatctgggcctgga-ggggagatCTGGACCTGGAGGTTGAGtta
i papAnu2.chr19                   M 1176 C 0
s chlSab2.chr6                    47447651 474 + 50890351 TACACACGGAGAAGAGTTTGAAACACAGATAAAAACAACAAAAATACGTGAAAAGTCTTTCACGTCAGCACAGATTTTAGTCACCTCGTGTCCGGGAGGTTGGATTTGAGACGTGTTTTGAGCTGGTCAGAGTGAAGGACGCAAGGTGT-CAGTTCTAGTGAGAACCATTTCCAGGAAGCCATTTTCCCCTCTTGAGTGAGCACCCGCTGCGCCTCATGCAAGGTAGGAAGAGTCTGCGTACGTCACCCTCCCATGATGTGGTCAGCACGTCAACTGCATGGGCAGGGCGCCAGATAACATCCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAATCGACAGAGGAAGCGCTGGGGTGGAGATCTGGGCCTGG--GTGGAGATCTGGGCCTGGAGG-GGAGATA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=14271.000000
s hg38.chr19_GL949751v2_alt         752807 28 +  1002683 TGGGCCTGGAGTGGAGATCTGGGCCTGG
s panTro4.chr19                   59691668 28 + 63644993 TGGTCCTGGAGTGGAGATCTGGGTCTGG
i panTro4.chr19                   C 0 C 0
s papAnu2.chr19                   47756080 28 + 51301725 tgggcctggagtggagatatgggcctgg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47448125 28 + 50890351 TGGGCCTGGGGTGGAGATCTGGGCCTGG
i chlSab2.chr6                    C 0 I 32603
e ponAbe2.chr19                   56647660 61 + 60714840 I
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=4073.000000
s hg38.chr19_GL949751v2_alt         752835 14 +  1002683 AGTGGATATATGGG
s panTro4.chr19                   59691696 14 + 63644993 AGTGGATTTATGGG
i panTro4.chr19                   C 0 C 0
s papAnu2.chr19                   47756108 14 + 51301725 ggtggagatctggg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480756 14 + 50890351 AATGGAGATATCAG
i chlSab2.chr6                    I 32603 C 0
e ponAbe2.chr19                   56647660 61 + 60714840 I
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=1216.000000
s hg38.chr19_GL949751v2_alt         752849  8 +  1002683 CCTAGAG------A
s panTro4.chr19                   59691710  8 + 63644993 CCTAGAG------A
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647721  7 + 60714840 CCTGGAG-------
i ponAbe2.chr19                   I 61 C 0
s papAnu2.chr19                   47756122  7 + 51301725 cctggag-------
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480770 13 + 50890351 CCTGGAGTAGAGA-
i chlSab2.chr6                    C 0 T 11052
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=33325.000000
s hg38.chr19_GL949751v2_alt         752857 58 +  1002683 TGGAGTGATGGGCCTAGAAGTGGAGATCTGGGCCCAGAGGTCGAGATATAGGCCTGGA
s panTro4.chr19                   59691718 57 + 63644993 TGGAGTGATGGGCCTAGAAGTGGAGATCTGGGTCTGGA-GTGGAGATATGGGCCTGGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647728 57 + 60714840 TGGAGTTACGGGCCT-GCAGTAGAGATGCGGGCCTGGAGGTGGAGATATGGGCCTAGA
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47756129 56 + 51301725 tggagatatgggcct-ggggtggagataTGATCCTGGA-Ggggagatctgggcctgga
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47469731 56 + 50890351 TGGAGATATGGGCTT-GGAGTGGAGATATGGGCCTAGA-GTGTAGATATGGGCCTGGA
i chlSab2.chr6                    T 11052 I 11065
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=600.000000
s hg38.chr19_GL949751v2_alt         752915 1 +  1002683 G
s panTro4.chr19                   59691775 1 + 63644993 G
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647785 1 + 60714840 G
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47756185 1 + 51301725 g
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e chlSab2.chr6                    47469787 11065 + 50890351 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109 0 + 64156825 C

a score=15282.000000
s hg38.chr19_GL949751v2_alt         752916 28 +  1002683 GTGGAGTGATGGGACTGTAGTGGAGATC
s panTro4.chr19                   59691776 28 + 63644993 GTAGAGATATGGGCCTGGAGTGGAGATC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647786 28 + 60714840 GTGGATATCTGGGCCTGCAGTGGAGATA
i ponAbe2.chr19                   C 0 T 154
s papAnu2.chr19                   47756186 28 + 51301725 gtTGAGTTATGGGCCTGGGGTGATGata
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480852 28 + 50890351 GTGGAGATATGGGCCTGGGCTGGAGATC
i chlSab2.chr6                    I 11065 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=66027.000000
s hg38.chr19_GL949751v2_alt         752944  99 +  1002683 TGGGCCTGGAGTGGAGATAGGAACCTGGAGGGGAGAT--------------------------------------AGGAACCTGGAGGGGAGATATGGGCCTGGAGGTGGAGATATGGGCCTGGAGTGGAGTCATGG
s panTro4.chr19                   59691804  99 + 63644993 TGGGCCTGGAGTGGAGATAGGAACCTGGAGGGGAGAT--------------------------------------AGGAGCCTGGAGTGGAGACATGGGCCTGGAGGTGGAGATATGGGCCTGTAGTAGAGTTATGG
i panTro4.chr19                   C 0 I 11260
s ponAbe2.chr19                   56647660  98 + 60714840 TGGGCCTGGAGTGGAGATAGGAACCTGGATGGGAGAT--------------------------------------AGGAGCCTGGAGTGGAGATATGGGCCTGGA-GTGGAGTTACGGGCCTGCAGTAGAGATGCGG
i ponAbe2.chr19                   T 154 C 0
s papAnu2.chr19                   47756214 136 + 51301725 tgggcctggagtggagatatgatcctggagtggagatctgggcctgggaTAGAGACATGGGCCTGGCATGGAAGGATGGGcctggaatggggatatgggcctggg-gtggagatctgggcctggagtggagatatgg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480880 117 + 50890351 TGGGCCTGGAGTGGAGATAGGATCCTGGAGTGGAGATCTGTTCCTGGAGTAGAGAT-------------------ATGGGCCTGGAGTGGAGATATGGGTCTGGA-GTGGAGACATGGGTCTGGAGTGGAGATATGG
i chlSab2.chr6                    C 0 I 19
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=2162.000000
s hg38.chr19_GL949751v2_alt         753043  9 +  1002683 GCCTGGAGG------------------
s panTro4.chr19                   59703163  9 + 63644993 GCCTGGAGA------------------
i panTro4.chr19                   I 11260 C 0
s ponAbe2.chr19                   56647758  9 + 60714840 GCCTGGAGG------------------
i ponAbe2.chr19                   C 0 T 16756
s papAnu2.chr19                   47756350 27 + 51301725 gcctgggatggagatatgggcctgggt
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481016 27 + 50890351 GCCTGGAGAGGAGATATGAGCCTGGGG
i chlSab2.chr6                    I 19 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=16275.000000
s hg38.chr19_GL949751v2_alt         753052 23 +  1002683 TGGAGTTATGGGCCTGCAGTAGA
s panTro4.chr19                   59703172 23 + 63644993 TGGAGATATGGGCCTGGAGTGGA
i panTro4.chr19                   C 0 I 362
s ponAbe2.chr19                   56631011 23 + 60714840 TGGAGATCTGGGCCTGGAGTAGA
i ponAbe2.chr19                   T 16756 C 0
s papAnu2.chr19                   47756377 23 + 51301725 tggagatatgggcctgggatAGA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481043 23 + 50890351 TGGAGATATGGGTCTGGAGTGCA
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=64467.000000
s hg38.chr19_GL949751v2_alt         753075 103 +  1002683 GATATGGGCCTGAAGTGGAGACATGGGCCTGGA-GTGGAGATATGGGCCAGGAGTGGAGATATGGGCCTAGAGGTCGATATCTGGGCCTGGAGTGGAGATATGG
s panTro4.chr19                   59703557 103 + 63644993 GATATGGGCCTGGAATGGAGATATGGGCCTGGGTGTGTAGATATTGGACTGGAGTGGAGATATGGGCCT-GATGTGGAGATACGGGCTTGGAGGGGAGATATGA
i panTro4.chr19                   I 362 C 0
s ponAbe2.chr19                   56631034 103 + 60714840 GTTACGGGCCTGCAGTAGAGATATGGGCCTGGA-GCGCAGATATGGGCCAGGAGTGGAGATGTGGGTCTAGAGGTGGATATCTGGGCCTGGAGTGGAGATATGG
i ponAbe2.chr19                   C 0 I 16630
s papAnu2.chr19                   47756400 101 + 51301725 GACATGGGCCTGGCATGGAGGGATGGGCCTGGa-atggagatatgggcctggaggggagatctgggcct--gggtggagatatgggcctgggttggagatatgg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481066 102 + 50890351 GATATGGGCCTGGAGTGGAGATATGGGTCTGGA-GAAGAGATATGAGCCTGGAGAGGAGATATGGGCCT-GGGGTTGAGATATGGGTCTGGAGTGGAGATATGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=-4908.000000
s hg38.chr19_GL949751v2_alt         753178  8 +  1002683 GCCAG---------------------------------------------------------------------------GAG
s panTro4.chr19                   59703660  8 + 63644993 TCCTG---------------------------------------------------------------------------GAG
i panTro4.chr19                   C 0 C 0
s papAnu2.chr19                   47756501 83 + 51301725 gcctgggatAGAGACATGGGCCTGGCATGGAGGGATGGGCCTGGAATGGAGATATGAGCCTGGAGGGGAGATCTGGGCCTggg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481168  8 + 50890351 GCCTG---------------------------------------------------------------------------GAG
i chlSab2.chr6                    C 0 C 0
e ponAbe2.chr19                   56631137 16630 + 60714840 I
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=49344.000000
s hg38.chr19_GL949751v2_alt         753186 77 +  1002683 TGGAGATATGGGCCTAGAGGTCGATATCTGGGCCTGGAGAGGAGATATGTGCCTAGGATGGAGATACGGGCCTGGGT-
s panTro4.chr19                   59703668 76 + 63644993 TGTAGTTATGGGCCTGGAGGTGGAGATCtgggcctggggtggagatatgggcctggggtggagatatgggcctgga--
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647767 77 + 60714840 TGGAGATATGGGCCTAGAGGTGGATATCTGGGCCTGCAGTGGAGATATGGGCCTGGGATGGAGATATGGGCCTAGAG-
i ponAbe2.chr19                   I 16630 C 0
s papAnu2.chr19                   47756584 75 + 51301725 tggagatatgggcctgg-ggtggagatctgagcctggagtggagatatgggcctgggatAGAGATATTGGCCTGGA--
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481176 77 + 50890351 TGGAGATATGGGTCTGG-AGAGGAGATATGAGCCTGGAGAGGAGATATGGGCCTGGGGTGGAGATAGAGGCCTGGAGT
i chlSab2.chr6                    C 0 T 33004
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=126296.000000
s hg38.chr19_GL949751v2_alt         753263 247 +  1002683 GTGGAGATATGGGACTGGAGAGGATATATGGGCC--------------------------------------TGG-AGTGGAGATATGGGACTGGAGAGGAGATATGGACCTGGAGTGGAGATAAGGGCCTGGATTGGAGATATGGGCCCAGGGTGGAGATCTGAGCCTGGATTGGAGATATGGGCCTGGATTGGCGATATGGGCTTAGGGT--------------------------------------GGAAATATCGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCTTGA-------------------GGTGGGGATATGGACCTG-------------------GA
s panTro4.chr19                   59703744 209 + 63644993 gtggagatatgggactggagtggagatatgggcc--------------------------------------tgg-ggtggatatctgggcctggagaggagatatgggcctggagtggagata-------------------tgggcctagggtggagatctgagcctggattggagatgtgggcccggattggCTATATGGGTCTAGGGT--------------------------------------GGAAATATCGGCCTGGAGTGGAGATATGGGCTTGG--------------------------------------GATGGGGATATGGACCTG-------------------GA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647844 267 + 60714840 GTGGAGTTACAGGCCTGCAGTAGAGATATGGGCC--------------------------------------TGGAGGTGGAGATCTGTGCCTGGAGTGGAGATATGGGCCTGGATTGGAGATATGGGCCTGGAGTGGAGATATGGGCCAAGGGTGGAGATCTGAGCCTGGATTGGAGATATGGGTCTGGATTGGAGATATGGGCCTAGGGT--------------------------------------GGAAATATCGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCTTGG-------------------GGTGGGGATATGGGCCTGGGGTGGGGATATGGGCCTCGA
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47756659 342 + 51301725 GTGGAGATTTGGGCCTGGAGTAGAGATATGAACCTGgaatagagataggatcttggAGTAGAGACATGAGCGTGG-AGTGGAGATACGGGCCTGCAGTGGAGATACGGGTCTagagtggagatatgggcctggagtggagatctgggcctgggctggagatctgggcctggaggggagataggagcctggagtggagatatgtTCCTGGAGTAGAGATATGGGTCAGGAGTGGAGATAGGAGCCTGTAAGGGAGATATGGGTTTGGAGTGGAGATATGGACCTGGAGTGGAGATACGGGCCTGGAGGGGAGATATGAGCCTGGAGTAGAGATATGGACCTG-------------------GA
i papAnu2.chr19                   C 0 T 45904
s chlSab2.chr6                    47448249 246 + 50890351 GTGGAGATACGGGTCTAGAGTGGAGATATGGGCC--------------------------------------TGG-AGTGGAGATATGGGTTTGGTGTGGAGATATGGGCCTAGGGTTGAGATATGGGCCTGGAGTGGAGATATTAGCCTGGATTGGAGATAAGGGTTTGGAGTGGAGATATGAGCCTGGAGTACAGATATGAGCCTGGAGT--------------------------------------GGAGATATCAGCATGGAGCGGACATGTGGGCCTGTTGTGTAGATCTAGGCCTCG--------------------GTGCAGATCTGGATCCG-------------------GA
i chlSab2.chr6                    T 33004 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=83414.000000
s hg38.chr19_GL949751v2_alt         753510 115 +  1002683 GGCTGGGTCTCTGCACAGCCGACAGCCCTGTTCTTGGGTGCAGGTAGGCACTGAGGGTGAGTTTACCTTCAGCCCAGGAAGGGCCTGGCTACCAAGACTCACAGCCCAGTGGGGG
s panTro4.chr19                   59703953 115 + 63644993 GGCTGGGTCTCTGCACAGCCGAGGGCACTGCTCTTGGGTGCAGGTAGGCACTGAGGGTGAGTTTACCTTCAGCCCAGGAAGGGGCTGACTACCAAGACTCACAGCCCAGTGGGGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56648111 115 + 60714840 GGCTGGGTCTCTGCACAGCCGACAGCTGTGTTTTTGGGTGCAGGTAGGCACTGAGGGTGAGTTTACCTTCAGCCCAGCAAGGGCGTGGCTACCAAGACTCACAGACCAGTGGGGG
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47711097 115 + 51301725 ggCCGGGTCTCTGCACAGATGAGAGCCCTGTTCTTGGGGGCAGGTAGGCAGAGAGTGTGAGTTTACCTTCAGCCCAGGAAAAGCCTGGCTGCCAAGACTGACAGCCCAGTGGGGG
i papAnu2.chr19                   T 45904 C 0
s chlSab2.chr6                    47448495 114 + 50890351 GGCTGGGTCTCTGCACAGCTGACATCCCTGCT-GCGGGGGCAGGTAGGCAGCCAGGGTGAGTTTACTTTCAGCCCAAAAAGGGCCTGGCTGCCCAGACGCACAGCCCCGTGGGGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     8297 3273 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=2020174.000000
s hg38.chr19_GL949751v2_alt         753625 1807 +  1002683 CAGCAAGGGTGC-CCTGGTTTGCCTGC-----AGATGGGTCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGTGAGTCCTTCTCCCAACCTTCGGGTGTCATCTCCCCACATAAGAGGATTTTCCTGAAATGGGAGGGAAGTCCTGTCAGGGAGTCTCTCATAAACTAGGAAGAAGGGACCCTGGGGTGCTGGGCCCACATTTCTGACCTTG-CCTCCCTGGCCTTTCATTCCCTTGGCAGAGTCAAGTTCTGTGGGGACCAG---GGTTAGACTACGGTGCTCAAAGCTGGGGTGTGTGGTGGGGAAGTGG---------------------------------TAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCGTTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGAAAACCACAGCCATGGCCCTGACATTCCAA-TCCTCTGATGGGGACTCAGTTGTTTATTTTCGTTCAGGCATCGGCTGATATTCCATTCTCAAAGGACATGCCCTCCACCCCATGTCTACCCTGTGTTGTTTTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTACTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTGTTGTAGGGAGACACCTTGTGTTTGCGGGATGGGTCCTTCCTTTAGCCCTGGGCACCAAGGTGTGATAGCAGCCATAGAAACTTGGAAAGCGAGGAGAATCTTCAGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGCGGTGCCTCCTTCTCCCCACGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGCCAAGCCCTGTGGTGCCTCCAGG---ACATGTGATTCTTCAGTGTCATTCTTATCTTGGGTTTAA---------CAACTTCAGTCTGTAAAAGGAAGATGGGGTGCCTGTCCCTGAGCTCTACAACATAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCAGCACACGCAGGGACCTATACATGTCGGGGTTCACAACCACACTACCCCAGTGGGTGGTCGGCACCCAGCAACCCCCTGGAGATCACGGTCACAGGTCAGAGGGCTCCTGTCTGGGATTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTCCTGGTGGGCGTGTCCTTGCGGGTCCCATCATGCAAGTCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgatgactacattctaatccctggagtctgtgactatttatgatataggggaagggactgaaggagaagatggagctcaggttgttgatgagttgaccttgagatggggagacagcctggactgtcctgatgggctcagtgtagtcacaggggtccacaggaaaggaggaggaagaggggagtggggattacagcagcataatgggagtctccatca----------gctttgaaggtggaggaagtccaggagccatgaatgcaggtggcctatagaggctggaaaagtcaaggaactgattctcctgagtctccagagggaacgaagccctgcaggtaccttgatttta-cccacgacaaacagggtccgatttctgtctccagaattggaaggggttagtgtgctctctcctgctgccatgcttctgataattttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAGTTAAGAaacaacacaaggatagccaggcatggtggcaggtgcatgtaatcctagcgact
s panTro4.chr19                   59704068 1807 + 63644993 CAGCAAGGAAGG-CCTGGTTTCCCTGC-----AGATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCTTGGCCACATGAGGGTAAGTCCTTCTCCAAACCTTAGGGTGTCATCTCCCCACATAAGAGGATTTTCCTGAAATGGGAGGGAAGTCCTGTCAGGGAGTCTCTCATAAACTAGGAAGAGGGGACCCTGGGGTGCTCGGCCCACAGTTCCGACCTCG-CCTCCCCGGCCTTTCATTTCCTTGGCAGAGTCAAGTTCTGTGGGGACCAG---GGTTAGACTGGGGTGCTCAAAGCTGGGGTGTGTGGTGGGGAAGTGG---------------------------------TGGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCGTTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGAAA-CCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGTTTATTTTCGTTCAGGCATCCACTGATAT-CCATTCACAAAGGACATGCCCTCCACCTCATGTCTACCCTGTGTTGTTTTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTACTCAGCACTTGCTCAAAGTTCTCAGCTGACGCTTTTGTTGTAGGGAGACACCATGTCTTTGCGGGATGGGTCCTTCCTTCAGCCCTGGGCACCAAGTTGTGATAGTAGCCATAGAAACATGGAAAGTGAGGAGAATCTTCTGAGCACAGGGAAGGAGGGGTGACTCCATATCCTCCATTCTAAAGCGGCGCCTCCTTCTCCCCAAGGTGGTCAGAACAAGCCCTTGCTGTCTGCCTGGCCCAGCCTTGTGGTGCCTCTAGG---ACATGTCATTCTTCAGTGTCACTCTTATCTTGGGTTTAA---------CAACTTCAGTCTGTACAAGGAAGGTGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCCCAGCACACACAGGGACATACAGATGTCGGGGTTCACACCCACACTCCCCCAGTGGGTGGCCGGCATCCAGCAACCCCCTGGTGATCGTGGTCACAGGTCAGAGGGCTCCTGTCTGGGATTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGAGCGTGTCCTTGAGGGTCCCATCAGGAAGGCCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCGgtgctgggaagaataattgtccccaatgatgactacatactaatccctggagtctgttactatttatgttataggggaaggcactgaaggggaagatggagttcagattgttgatgagttgaccttgagatggggagacagcctggactgtcctgctgggctcagtataatcacaagggtccacatgaaaggaggaggaagaggggagtggggattagagcagcgtaatgggagtctccacca----------actttgaaggtggaggaaggccatgagccatgaatgcaggtggcctatagaggctggaaaagtcaaggaactgattctcctgagtctccagagggaaagaagccctgcagatggcttgattttagcccaggaaaaccagggtccgatttctgtccccagaataggaaggtgtcagggtgctctctcctgctgccatgcttctgataattttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAGTTAAGAAAGGACACAAGGAtagccgggcatggtggcaggtgcatgtaatcctagcgact
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56648226 1807 + 60714840 CAGCAAGGGAGG-CCTGGTTTGCCTGC-----AGATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACATGAGGGTGAGTCCTTCTCCAAACCTTAGGGTGTCATCTCCCCACATAAGAGGATTTTCCTGAAACGCGAGGGAAGTCCTGTCAAGGAGTCTCTCATAAACTAGGAAGAGGGGACCCTGGGCTGCTCGGCCCACAGTTCTGACCTTG-CCTCCCTGGCCTTTCATTCCCTTGGCAGAGTCAGGTTCTGTGGGGACCAG---GGTTAGACCGGGGTGCTCAAAGCTGGGGTGTGTGGTGGGGAAGTGG---------------------------------TAGGAACAGCAGATCCTCTGAGGACAAAGGTGTTACTCACACACTTCAGCGTTTCCATGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGAAA-CCACAGCCATGGCCGTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGTCTATTTTCGTTCAGGCATCCGCTGATAT-CCATTCACAAAGGACATGCCCTCCACCCCATGTCTACCTTGTGTTGTTGTATGTGAGTAATCTTACAGTATTAAAATCTAGTAGGAGTCTCTTACTCAGCACTTGCTCAAAGTTCTCAGCTGACACTTTTGTTGTAGGGAGATGCCATGTCTTTGTGGGATGGGTCCTTCCTTTAGCCCTGGCCACCAAGGTGTGATAACAGCCATAGAAACGTGGAAAGTGAGGAGAATCTTCTGAGCACAGGGAGGGAGGGGTGGCTCCACGTCCTCCTCTCTAAGGCGGCACCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCTGCCTGGTCCAGCCTTGTGGTGCCTCCAGG---ACATGTGATTCTTCAGTGTCACTCTTATCTTAGGTTTAA---------CAACTTCAGTCTCTACAGGGAGGATGGGGTGCCTGTCCCTGAGCTCTACAACAGAATATTCTGGAACAGCCTTTTCATGGGCCCTGTGACCTCAGCACAAGCAGGGACCTACAGATATCAGGGTTCACACCCACACCCCCCCAGTGGGTGGTCGGCATCCAGCAACCCCCTGGTGATCATGGTCACAGTTCAGAGGGCTCCTGTCTGGCATTCTCTTTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGCGTGTCCTTGAGGGTCCCATCACCCAGGCCCTGACTGTATTTGGGTTAAAGGTGGATTGAATACAGGGAAATGGGTGCtgtggtgggaagaataattgtccccagtgataactgcattctaatccctggagtctgtgactatttatgttataggggaagggactgcaggggaagatggagctcaggttgttgatgagttaaccttgagatggggagacagcctggactgtcccgctggggtcagtgtaatcacaagggtccacatgaaaggaggaggaagaggggagtggggattagagcagcgtaatgacagtctccatca----------gctttgaaggtggaggaaggccacgagccatgaatccaggtggcctatagaggctggaaaagtcaaggaactgattctcctgagtctccagagggaacaaagccctgcagatgtcttgattttagcccaggaaaaacagggtccaatttctgtctccagaagtggaagaggtcagtgtgttctctcctgctgccatgcttctgataattttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAGTTAAGAAACGACACAAGGAtagctgggcatggtggcaggcccatgtaatgctagtgact
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    11570 1845 -    21488 CAGC-AGGGTGC-CCTGCTTTGCGTGCGGATGGGATGGATCCTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGCGGCCTGGCCACATGAGGGTGAGTCCTTCTCCAAACCTTAGGGTGTCATCTCCCCACATAAGAGGATTTTCCTGAAACAGGAGGGAAGCCCAGTGGGGGATTTTCTTATGAACAAGGATGAGGAGACCTGGGGGCGCTCAGCCCACAGTTCTGACCTTGCCCTCCCCAGCCTTCCTTTCCCTTGGCTGGGTCAGGTTTTGTGGGAACCCGGGAGGGTAGACTGGGGTCCCCCAAGCTGGGCTGTGCGGGGGGGATGTGGTGTCACCGGCAGAGGAAGGGAGCAAAGCAGTGCTAGGAACAGCAGG-CCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGCGTTTCCGTGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACC-TAAGAGGTGGGGGAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTGTGTATTGTGGTTCACGCATTGGCTGATATTCCATTCACAAAGGACATGCCCTCGACTCCATGTCTA-TTTGTGTTGTTTTCTGTGAGTAATCTTGCAGTATTCAAATCTAGTAAGAGTCGCTTATTCAGCACTTGCTCAAAGTTCTCAGCTGACAC--TTGTTGTAGGGAGGCGCCAAGTCTATCCCAGGTGGGTCCTTCCTGTAGCCCTGGCCACCCAGGTGTGGTAGGGGCCTTAGAAAGGTGGAAAGTGGGGAGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCTTCTCTAAGGCAGTGCCTCCTTCTCCCCAAGGTGGTGAGGTCAAGCCCTTGCTGTCTGCCTCGCCCAGCACTGTGGTGCCTCCAGG---ACATGTGACTCTTTGGTGTCATTCTTATCTTGGGTTTAA---------CAACTTCAGTCTGTACAAGGAAGACGGGGTGCCTGTCCCTGAGCTCTACAACTGAATATTCTGGAACAGCCTTTTAATGGGCCCTGTGACCCCAGCACACGCAGGGACCTACAGATGTTGGGGTTCACACCCACACTCCCCCACTGTGTGGTCTGCACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAGGGCTCCTGTCTGGGATTCTCCTTGTCCCACCTCCTAAGTCCCAGAGCTCCTGGTGGGCGTGTCCTTGAGGGTCCCATCACGCAGGCCCTGACTGTATTTGGGGGAAAGGGGCATTGAATACAGGGAAAGAGGTGCtgtggtgggaagaataattgtccccaatgatgactacattctaatccctggagtctgtgactatttatgttataggggaagggactgaaggggaagatggagctcaggtggttgatgagttgaccttgagatggggagacaacctggactgtccctctgggcacagtgtaatcacaagggtccacatgaaaggaggaggaagaggggagtggggattagagcagcgcaatgggagtctccatca----------gctttgaaggtggaggaaggccacgagccatgaatgcaggtggcctgtagaggctggaaaagtcaaggaactgattctcctgagtctccagagggaacgcagccctgcagatgccttgattttagcccaggaaaaacagggtccgatttgtgtctccagaagtggaaggggtcagtgtgttctctcctgctgccatgcttctgataattttctacagcagcaacaggaaaccaacacTGGAACCCAGGTCAAGGACAAGTTAAGAAACGACACAAGGAtagccgggcgtaatggcaggcacatgtaatcctagcgact
i nomLeu3.chr10_GL398297_2_random I 3273 C 0
s papAnu2.chr19                   47711212 1796 + 51301725 CAGCAAGGGAGG-CCTGGTTTGCCTGC-----AGATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGAGGGCCTGGCCACATGAGGGTGAGTCCTTCCCCAAACGTTAGGGTGTCCTCTCTCCATGTAAGAGGATTTTCCTGAAACAGGAGGGAAGTCCTGTCCAGGAGTCTCTCATCAATTAGGAAGAGGGGACGCTCGGATACTCAGCCCACAGTTCTGACCTCGCCCTCCCCAGCCTTTCTTTCCCTTGGCAGAGTCAAGTTCTGTGGGGACCAG---GGTAAGACTGGGGTGCTCAAAGCTGGGGTGTGGAGGGGGGA---------------------------------AGTGCTAGGAACAGCAGGTCCTCTGAGGACATAGGTGTGACTCACACACTTGAGTGTTTCCATGAcggtcagggctgcagtgtggCTGCTGTCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGGCCCTGACATTCCAAATCCGCTGATGGGGGCTCAgctgtttatttttgttcaggCATCGGCTGGTATTCCATTCACAAAGGACATGCCCTCCACCCCATGTCTACCTTGTGTTGTTTTATGTGAGTCATCTTGCAGTATTAAAATCTAG---GAGTCGCTTACACAGCACTTGCTCAAAGTTCTCAGCTAACA-CTTTGTCGCAGGGAGACACCATGTCTTTGCGGAATGGGTCCTTCCTTTAGCCCTGGGCACCCAGGTGAGGTAGGAGCCATAGAAACATGGAAAGCGAGGAGAATCTTCTGAGCACACGGAGGGTGGGGCGGCTCCG------CCTCTCTAAGGCGGCGCCTCCTTCTCCCCAAGGTGGTCAGGACAAGCCCTTGCTGTCGGCCTGGCCCAGCCCTGTGATGTCTCCAGG-----ATGTGACTCTTTGGTGTCACTCTTATCTTGGGTTTAA---------CAGATTCAGTCCGTACAAGGAAGACGGGGTGCCTGTCCCTGAGCCCTACAACAGAATATTCTGGAACAGCTTCCTCATGGGCACTTTGATCCC-ACACATGCAGGGACCTACAGATGTGGGGGTTCACACCCGCACTCCCCCAATGGGTGGTTGGCTCCCAGCAACCCCCTGGTGATCACGGTCACAGGTCAGAGGGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCGTCAGGATTTGGTCACCCAGGCCCTGACTTTATTTGGGGTAAAGGGGGATTGAATACATGGAAATGGGTGCTGTGGTGGGAAGAATAACTGTCCCCAAT-ATGGCTACATTCTAATCCCTGGAGCCTATGACTCTTTATGCTATAGGGCAGGGGACTGAAGGGGAAGACGGAGCTCTGGTTGTTGATGAGTTaaccttgagatggggagacGGCCTGGACTGTCCCGCTGGGCTCAGTGGAATCACAAGGGACCACACGAGAGGAGAAGGATGAGGGGAGTGGGGATTAGAGCAGCGTCGTGGGAGACTCCATCC----------GCTTTGAAGGTGCAGGAAGCCCATGGGCCACCAATGCAGGTGACCTATAGAGTCTGGAAAAGTCAAGGAACTGATTCTCCCAAGTCTCCGGAGGGAACGCAGCCCTGCAgatgccttgattttagcccaggaAAAACAGGGTCCAATTTCTGTCTCCAGAAGTGGAAGGGGTCAGTGtgttctctcctgctgccttgctTCTGATAATTTTCTACAGTGGCAACAGGAAACCAACACTGGAATCCAGGTCATGGATAAGTTAAGAAACGGCCCAAggatagccgggcgtggtcgcaGGCGCATGTAATCttagcgact
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47448609 1846 + 50890351 CAGCAGGGGAGGCCCTGGTTTGCCTGC-----AGATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGGTCCAGAGGGCCTGTCCACACACGGGTGAGTCCTTCCCCAAACCTTAGGGGGTCATCTCCCCACCTAAGAGGATTTTCCTGAAACAGGAGGGAAGTCCTGTCAGAGAGTCTCTCATACAATAAGAAGGGGGGACCCTGGGGTGCTCGGCTCACACTTCCGACCTCGTCCTCTCTGGCCTTTCTTACCCTTGGCTGAGTCAAGCTCTGTGAAGACCGG---GGTGAGCTTGGGGTGCTCCAAGCTGAGGTGTGCAGGGAGGAAGTGGTGTCAGCGACTGAGGAAGGGAGGGAAGCAGTGCTAGGAACAGCAGGTCCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGTGTTTGCATGACGGTCAGGGCTGCAATGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGACCCTGACATTCCAAATCTTCTGATGGGGGCTCA-------------GTTCATGCACTGGCTGATATTCCATTCACAAAGGACATGCCCTCCATGCCGTGTCTACTTTGTGGTGTTTTACGTGAGTCATCCTGCAGTATTAAAATCTAGTAAGAGTCCCTTATTCAGCACTTGTTCAAAGTTCTCAGCTGACACCTTTGTTGTAGGAAGATGCGGTGTCTATGTGGGATGGGTCCCTCCTGTAGCCCCGGACACCCAGGTGTGGTAGGAGCCTTAGAAACATGGAAAG-GGGAAGAATCTTCTGAGCACATGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGCGGCACCTCCTTCTCCCCCAGGTGATCAGGACAAGCCCTTCCTGTCTGCCCAGCCCAGCGCTGTGGTGCCTCAGGGAGGACACGTGACTCTTCGGTGTCACTATCGTCGTGGGTTTAACAACTTTACCAACTTCACTCTGTACAAAGATGACAGAAGCCACGTTCCCATCTTCCCCGGCAGAATATTCCAGCAGAGCTTCGTCATGGGCCCTGTGACCCCGGCACACGCAGGGACCTACAGATGTCGGGGTTCACACCCGCACTCCCCCACTGAGTGGTCGGCACTCAGCGACCCCCTGGCGATCAGGGTCACAGGTCAGAGGGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGAGGGTGTCCACAAGGGTCCCATCACCCAGGACCTGACTGTCTTTGGGGTAAAGGGGGATTGAATACAGGGAAATGGGTGCtgtgatgggaagaataactgtccccaat-atggttacattctaatccctggagcctgtgactctttatgctatagggcaggggactgaaggggaaganggagctcaggttgttgatgagttgaccttgagatggggagacggcctggactgtcccactgggctcagtggaatcacaaggcaccaaacgagaagaggaggaggaggagagtggggattagagcagcgttgtgggagagtccatcagccactgtgggctttgaaggtggaggaaggccacgagccacaatggcaggtggcctctacgggctggagaagtcaagagaaccgctctgttgagtctccagagggaacacagttctgtagatgacttgattttagcccaggaagaactggatccaatttctgtctccagaagtggaaggggtcagtgtgttctctcctgctgccatgtttgtgataattttctgccgcagcaacaggaaaccaacacaGGAA-CCAGGTCAAGGACAAGTtaagaaa---ccaaacgatagccgggcatggtggtgggcgtgagtaaac-caacgact
i chlSab2.chr6                    C 0 I 6
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55637200  126 + 59248254 T
e rheMac3.chr19                   60526109    0 + 64156825 C

a score=15135.000000
s hg38.chr19_GL949751v2_alt         755432 20 +  1002683 tgggaggctgagggcaggag
s panTro4.chr19                   59705875 20 + 63644993 tgggaggctgagggcaggag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56650033 20 + 60714840 cgggaggctgggggcaggag
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13415 20 -    21488 caggaggctgagggcagggg
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47713008 19 + 51301725 cgggaggctga-ggcaggag
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e chlSab2.chr6                    47450455  6 + 50890351 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=714889.000000
s hg38.chr19_GL949751v2_alt         755452 623 +  1002683 aatcacttgaacccaggagacagaggttgcagtaagcctagaccacaccacttcactccagcctgggcaaaggagtgagactctgtcgccaa--------aaTTAATTAATTAATTAAAGAAACCAAACAAGGAGAAGGTTGGCTACACTGAGATCAGCAAGGCTCGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGCGGTTGATACTCCTCCAACCAGCACCAGGAGCCAGGCTATGGAAGCT--------------GGCACTGGCATGGCAAGAGTGTCTCCCAGTCCCTACCAGGAACAGGGTGTGTGGCCACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATTCGTCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACACAGACAGCAGGAAAGACATTAGTTCGAAATAGATACAACAGCCCAAGAGATGAGGCTGAGCCCAGCGGCAAGGGAATCAGAGGCTACTagagacagagggacagagaagagtgagggagacagaTGGAAGGACCTGCACCAGGAGTTATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGATA
s panTro4.chr19                   59705895 618 + 63644993 aatcacttgaacccaggagacagaggttgcagtgagcctagaccataccacttcactccagcctgggcgaaggtgtgagactctgtctccaa--------aaTTAATTAATTAA----AGAAACCAAACAAGGAGAAGGTTGGCTACCCTGAGATCACCAAGGGTGGGATGATGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTTGATACTCCTCAAACTAGCACCAGGAGCCAGCCTATGGAAGCT--------------GGCACAGGCATGGCAACAGTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATTCGTCCAAAGGAGATTGAACCAGGCTGCAAAGAACCTCGACGTGCAGACTATCCTGGTTCTTCTTCCACCCCCACATGGA-AGCAGGAAAGACATTAGTGTGAAATAGATACAACAGCCCAAGAGATGAGGCTGAGGCCAGTGGGAAGGGAATCAGAGGCTACTAGAGACAGAGGGACAGAGAAGAGCAGGGGAGACACATGGAAGGAACCGCACCAGGAGTTGTGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56650053 636 + 60714840 aatcacttgaacccaggagacagaggttgcagggagcctagaccacaccacttcactccagcctgggcaaaggagtgagactctgtctccaa--------aaTTAATTAATTAATTAAagaaaccaaacaagtagaaggttggttaccctgagatcagcaagggtgggatgatgatgccaccaccaggctccatccacatagggaggggttgaaactcctcaaaccagcaccaggagccagcctatggaagctggcaccatggagAAGGCACAGGCATGGCAAGAGTGGCTCCCAGTCCCCACCAGGAACAGGCTGTGTGGACACTGCTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAAGGATTCCAATTCATCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGATGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACACAGACAGCAGGAAAGACATTAGTGTGAAATACATACAACAGCCCAAGAGATCAGGCTGAGCCCAGCAGGAAGGGAATCAGAGGCTACTAGAGACAG-GGGACAGAGAAGACGGAGGGAGACAGATGGAAGGACCTGCACCAGGAGTTATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    13435 636 -    21488 aatcacttgaacccaggagacagaggttgcagtgagccgagaccacaccacttcactccagcctgggcgacggagtgagactctgtctccaa--------aaTTAATTAATTAATTAAagaaaccaaacagggagaaggttggctaccctgagatcagcaacggtggggtgatgatgccaccaccaggctccatccacatagggaggggttgatcctcctcaaaccagcaccaggagccaccctatggaagct-gcaccatggagaaggcaccgacatggcgagagTGGCTCCCAGTCCCCACCAGGAACAGGGTGTGTGGACACTGGTGCCTGCCTTGCTGATCAGTTCATACCTCCTGCCAAGGATTCCAGTTCATCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGACGTGCAGCCTATCCTGGTTCCTCTTCCACCCCCACATAGACAGCAGGAAAGACATTAGTGCCAAATAGATACAACAGCCCAAGAGATGAGGCTGAGCCCAGTTGGAGGGAAATCAGAGGCTACTagagacagagggacagagaagagggagggagacagaTGGAAGGACCTGCACTGGGAGTTATGGGCACAGAAAAGAACATGAAGACACAGAGAGGAAGGAGAGAGACA
i nomLeu3.chr10_GL398297_2_random C 0 I 372
s papAnu2.chr19                   47713027 635 + 51301725 aatcgcttaaacccaggaagcagaggttacagtaagctgagaccacaccacttcactccagcctgggcgaaggagtgagactctctctccaa--------aattaattaattaattaaagaagcCAAACAAGGAAAAGGTTGGCAACCCCGAGATCAGCAAGGGCGGGACGCTGATGCCACCGCCAGGTTCGATCCACAAAGAGAGGGGCTGATAGTCCTCGAACCAGCACCAGGAACCACCCTATGGAAGCTGGCACCATGGAGAAGGCACAGGCATGGCAGGAGAGGCTCCCAATCCCCACCAGGAACAGGGAGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATATGT-CTGCCAAGGACTCCAATGTGTCTGAAAGAGATTGAACCAGCCTGCTAAGAGCCTGGACATGCAGCCTGTCCTGGTTCCTCTTCCACCCCCATGTAGACAGCCGGAAAGAGATGAGTGCGAAATAGATACAGCAGCCCAAGAGATGAGGCTGAGCCCAGTGGGAAGGGAATCAGGGGCTactagagacagagagacagagaagagggtgggagacagaaggaaggaCCTGAAACAGGAGTTAAGGGCACAGAAAAGAAcatggagacacagagaggaaggagagagaa-
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47450461 632 + 50890351 aatcgcttgaatccgggaggcagaagttgcagtgagccaagaccacaccactatactcctgcctgggtgaaaaagtgacactctgtctcaaaaatcaattaattaatcaattaattaaAGAAATCAAACAAGGAGAAGGTTGGCAACTCCGAGATCAGGAAGGGCGGGACGCTGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTCGATGCTCCTAGAACCAGCACCAGGAGCCACCCTATGGAAGCTGAGGCCATGGAGAAGGCACAGGCATGGCAGGAGTGGCTCCCAATCCCCACCAGGAACAGGGAGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATACCTCCTGCCAGGGACTCCAGTTTGTCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGATATGCAGCCTG-CCTGGATCCTCTTCCACCCCCACATAGATAGCGGGAAAGAGATTAGTGGGAAACAGATACAACAGCCTAAGAGATGAGGCTGAACCCAGTGGGAAAGGCGTCTGAGGATACTAGAGACAGACGGACAGAGAAGAGGGAGGGACACAGATGGAGGGACCTGCACCAGGGGATAAAAG-----------ACAGGGAGACACAGAGAGGAAGGAGAGAGAC-
i chlSab2.chr6                    I 6 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=6286.000000
s hg38.chr19_GL949751v2_alt         756075 11 +  1002683 AGACACCAGGA
s panTro4.chr19                   59706513 10 + 63644993 -GACACCAGTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56650689 10 + 60714840 -GACACCAGTG
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47713662 11 + 51301725 agacaccAGGG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47451093 11 + 50890351 AGACAGCCGGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 1697 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    14071 372 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=181018.000000
s hg38.chr19_GL949751v2_alt         756086 204 +  1002683 AGGGGAAGCCTGACTCAATCCAGGTGCCATGGATGGGATGATAAAGAGAGACACCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCACCCAGGTCGCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAACACTTCCTTCTGCACAGAGAGGGG
s panTro4.chr19                   59706523 204 + 63644993 AGGGGAAGCCTCACTCATTCCAGGTGCCATGCATGGGATGATAAAGAGACACACCTTCTAAACTCACAAACTCTCTTCCTAGGAGTCCACAGGAAACCTTCCCTCCTGGCCCACCCTGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCGGATGTCATGTTTGAGCACTTCCTTCTGCACAGAGAGGGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56650699 204 + 60714840 AGGGGAAGCCTCACTCATTCTAGGTGCAATGGATGGGATGATAAAGAGAGACGCCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCCTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGAAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCAAGTTTGAGCACTTCCTTCTGCACAGAGAGGAG
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47713673 204 + 51301725 AAGGAAAGCCTCACTCATTCCGGATCCTGTGGATGAGATGAAAAAGAGAGATGCCTTCTAAACTCACAACCTCTCTTCCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCGCTGGTGAAATCAGGAGAGACAGTCATCCTGCAGTGCTGGTCAGATATCAAGTTTGAGCACTTCCTTCTGCACCGAGTGGGG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47451104 204 + 50890351 AGGGGAACCCTCACTCGTTCCAGGTGCCATGGATATGATGACAAAGGGAGACGCCTTCTAAACTCACAACCTCTCTTTCTAGGAGTCCACAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGGAGAGACAGTCATCCTACAATGTTCGTCAGATACCGTGTTTGGGCACTTCTTTCTGCAAAGTGAGGTG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771333 200 + 49145316 AGGGAGAGCTTCACCC---TGAGGTCCCAGGTGAGGGGTGAGGAAG-GAGACCCCTGTGAATTCCTCTGTCTTTGCTCCCAGGTGCATTCACAAAACCTTCCATCTCAGCCCACCCAAGCTCCCTGGTGGCTGCGGGAGTTAGGGTGACCGTGAGCTGTCACTCGGAGCTGGCATTTGATGAGTTTATCTTATACAAAGATGGG
i calJac3.chr22                   T 1697 I 55
e nomLeu3.chr10_GL398297_2_random    14071 372 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=28938.000000
s hg38.chr19_GL949751v2_alt         756290 49 +  1002683 ATGTTTAACGACACTTTGCGCCTCATTGGAGAACACCATGATGGGGTCT
s panTro4.chr19                   59706727 49 + 63644993 AAGTTTAACGACACTTTGCGCCTCACTGGAGAGCTCCATGATGGGGTCT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56650903 49 + 60714840 AAGGTTGAGGACACTTTGCGCCTCACTGGAGAGCTCCATGATGGGTTCT
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47713877 49 + 51301725 AAGCTTGAGGAGCCCTTGCGTCTCATCGGAGAGCTCCATGACGGGGGTT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47451308 49 + 50890351 ACCTTTGAGGAGCCCTTGCACCTTGTTGGAGAGCTCCGTGGTGGGGGTT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771533 55 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    14071 372 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=105781.000000
s hg38.chr19_GL949751v2_alt         756339 109 +  1002683 CCAAGGCCAACTTCTCCATCAGTCGCATGAAGCAAGACCTGGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCC
s panTro4.chr19                   59706776 109 + 63644993 CCAAGGCCAACTTCTCCATCGGTCCCATGACGGAAGACCTGGCAGGGACCTACAGATGCTACGGTTCTCTTACTCACTCCCCCTATCAGTTGTCGGCTCCCAGTGACCC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56650952 109 + 60714840 CCAAGGCCAACTTCTCCATCGGTCCCATGACGCCTGCCCTTGCAGGGACCTACAGATGCTATGGTTCTGTTACGCATTCCCCCTATCAGTTGTCAGCTCCCAGTGACCC
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47713926 109 + 51301725 CCAAGGCCAATGTCTCCATCAGTCCAGTGACACCTGCCCTGGCAGGGACCTACCAATGCTACGGTTCTTTTACTCACTCCCCCTATGAATGGTCAGCTCCCAGTGACCC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47451357 109 + 50890351 CCCAGGCCAACTATTCCATCCGTCCCACGATGTCTGCCCTTCCAGGGACCTACAGATGCTACGGTTCTGTCACTCACTCCCCCTATGTGTTGTCAGCTCCCAGTGACCC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771588 109 + 49145316 TCAAGGCTGTCTTTTGCCTGGGTCCTGTCACGCCGGCCCAGGCAGGAGCCTACAGATGCTGTGGTTCTTTCAGTCACTCCCGCTATGAGTGCTCGGCTCCCAGCGACCC
i calJac3.chr22                   I 55 C 0
e nomLeu3.chr10_GL398297_2_random    14071 372 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=65963.000000
s hg38.chr19_GL949751v2_alt         756448 42 +  1002683 TCTGGACATCGTGATCATAGGTGAGAGTGTCCAGACTTTCTT
s panTro4.chr19                   59706885 42 + 63644993 TCTGGACATCGTGATCACAGGTGAGAGTGTCCGGACATTCTT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56651061 42 + 60714840 TCTGGACATCGTGATCACAGGTAATAATGTCCGGACATTCTT
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14443 42 -    21488 TCTGGACATCGTGATCACAGGTGAGAGTGTCCGGACATTCTT
i nomLeu3.chr10_GL398297_2_random I 372 C 0
s papAnu2.chr19                   47714035 42 + 51301725 CTTGGACATCGTGATCACAGGTGAGAGTGTCAGGACATTCTT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47451466 42 + 50890351 CCTGGACATCATGATCACAGGTGAGAGTGTCCGGACATTCTT
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771697 42 + 49145316 CCTGGAGATTGTGATCACAGGTGAGTGTGGCTGGACCATCCT
i calJac3.chr22                   C 0 I 621
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=17883.000000
s hg38.chr19_GL949751v2_alt         756490 14 +  1002683 CTCATTGTCATTGG
s panTro4.chr19                   59706927 14 + 63644993 CTCATTGTCATTGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56651103 14 + 60714840 CTCATTGTCATTGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14485 14 -    21488 CTCATTGTCATTGG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47714077 14 + 51301725 CTCAATGTCACTGG
i papAnu2.chr19                   C 0 I 43287
s chlSab2.chr6                    47451508 14 + 50890351 CTCATTGTCACTGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109  0 + 64156825 C

a score=695931.000000
s hg38.chr19_GL949751v2_alt         756504 857 +  1002683 GATGCAGAGTGAATGATCCAGGACTTGGAGG-CCCAGGTGGCTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTGCCAACAGAGACAGAGAAACAGGAGACACAAGTAGAGACCAGGTGTCATAACAGAGAACAGACACAGGGGCCATACCGGGAGTTTGAAAAGACAGAAAGAGTTAAAGGAAA----CACACAGACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCCATGTTTATTCTGACACCTCTGCCTTCCATGTAATGGAGAGTAATCGTCCCAGGATATCATGGCCCCACAACACCAACCCCTGTATGCTGTGTGAACTTGTAG-TCTCCAGACTGGATTCTGAGGCTCATATTCCAAATAAGCCCACTTATGAGAGGATCAGTGAGAGGCACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACATAAAG----AGAAAAGAGGGCAGAGAAGTG---AGAATGATGGAAGGGAGCAGAGA-AAAGCACTAAAATTAGACTCCTGAGGGAGAGGCACAAGGACATTGAAAGATGGAGATGTGgggatgaattgcagagattccaaagagaactagagagaccgagaggcagagcaagacag------------------atgatag----atggatagatatagatagatgata
s panTro4.chr19                   59706941 862 + 63644993 GACACGGAGTGAATGATCCAGGACTTGGAGG-CCCAGGTGGTTGTAAGGAAGATGAGCTTGGTATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACCGAGAGTTAGAAAAGACAGAAAGAGTTAAAGGAGA----CACA--GACAGACATGTCCCAGAGAGAGGTGTCCCTCCATGCTGACTTTGCTCACAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGAAGAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCGTGTGGCACCTAAAGATGCCGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAGAGTAATCGTCGCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACATGCGG-TCCCCAGACTGGATTCTGAGGCTCACATTCCAAATAACCCCACATATGATAGGATCACTGAGAGACACAGAGAAaagtcaggaacaccaaaaagcaaagacataaacacacagagaatgagccacaggaaggagactgagagactcacagacacataaag-gagagaaaagagggcagagaagtggagagaatgatggaagggagcagagacaaagcactaaaattagagtcctgagggagaggcacaaggacatagaaagatggagatgtggggatgaattgcagagattccaaagagaactagagagaccgagaggcagagcaagacag------------------atgatag----atggatagatatagatagatgata
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56651117 863 + 60714840 GACGCAGAGTGAATGATCCAGGACTTGGAGG-CCCAGGTCATTGTAAGGAAGATGAGCTTGGTATTCTTAAGGAGCGAAACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGAAGTTAGAAATGACAGAAAGAGTTAAAGGAGA----CAGACAGACAG--ATGTCCCAGAGAGAGATATCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAAAACCCAAGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCATCTACAGATGCCATGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAGAGTAATCATCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTTCCCCAGACTAGATTCTGAGGCTCACATTCCAAATAACCCCACATATGAGAGGATCACTGAGAGACACAGAGAGAAATCAGGGACGCCAAAAAGCAAAGACATAAACACACAGAGAATGAGCCAGAGGAAGGAGATTGAGAAACTCACAGACACATAAAGAGAGAGAAAAGAGGGCAGAGAAGTGGCGAGAATGATGGAAGGGAGTAGAGA-AAAGCACGAAAATTAGAGTCCTGAAGGAGAGGCACAAGGACTTAGAAAGATGGAGATGTGGGGATGAATTGCAGAGATTCCAAAGAGAACTAGAGAGACCGAGAGGCAGAGCAagacag------------------atgatag----atggatagatatagatagatgata
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    14499 863 -    21488 GACACAGAGTGAATGATCCAGGACTTGGAGG-CCCAGGTGGTTGTAAGGAAGATGAGCGTGGGGTTCTTATGAAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAAAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACCGGGAGTTAGAAAAGACAGAAAGAGTTAAAGGAGA----CAGACAGACAGCCATGTCCCAGAGAGAGGTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAAGTTAGCAGTTTCATTTCTGTTTTACCTCCACAAAGTGTTCTCTACCAGGAGAACCCAAGGACACTCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCA-GCCTTGTGGAACTTACAGATACCGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAGAGTAATCTTCCCAGGATATCGTGGCCCCAGAACACCAACCCCTGTATGCCGTGTCAACTTGCGG-TCCCCACACTGGATTCTGAGGCTCATATTCAAAATAATCCCACATATGAGAGGATCACTGAGAGACACAGAGAGAAATCAGGGACACCAAAAAGCAAAGACATAAACAGACAGAGAATGAGCCAGAGGAAGGAGATTGAGAGACTCACAGACACACAAAGAGAGAGAAAAGAGGGCAGAGAAGTGGAGAGAATGATGGAAGGGAGCAGAGA-AAAGCCCTAAAATTAGAGCCCTGAGGGAGAGGCACAAGGACATAGAAAGATGGAGATGTGGGGACGAATTGCAGCGATTCCAAAGAGAACtagagagaccgagagacagagcaagacag------------------atgatag----atggatagatatagatagatgata
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47451522 890 + 50890351 GACACAGAGTGAATGATCCAGAACTTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGATTCTTATGGAGACAGACTGACTTGGCGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCAGACAGGGAGGTAGAAAAGAGAGAAAGAGTTAAAGGGGACACTCAGACAGACAGACATATCCCAGAGAGAGGCGTCCTTCCATGCTGACCTTGCTCAGAGACTTGGCACAGGTTAGAAATTTCATTTCTGTTTTACCTCCACAAAGTGTT-TCTACCAAGAGAACCCAAGGACGCACATATTTCTGTCCTGAGTCAGCCCCTGTGGCCTCAGGCCTTGTGGTACCTACAGATGCCGTGTTTGTTCTGACACCTCTGCCTTCCGTGCAGTGGAGAGTCATCGTCCCAGGATATCGTGGCTCCAGAACACCAACCCCTGTATGCTGCGTGTACTTGGGG-TCCCCAGATTGGATTCTGAGGTTCATATTCCACATAACCCCACATATGATAGGATTCCTGAGAGACACAGAGAGAAATCAGGAACATCAAAAAGCAAAGACATAAACACAAAGAGAATGAGCCAGAGGAAGGGGACTGAGAGACTCACAGACACATAAAGAGAGAGGAAAGTGGGCAGAGGAGTGGAGAGAATGATGGAAGGGAGCAGAGA-AAAGCTCCAAAATCAGAACCCTGAGGGAGGGGCACAAAGACAGAGATAGATAAAGATGTGGGGATGGATTGCAGAGATTCCAAATAGAACTAGAAAAACTGAGAGGCAGAGAAAGACAAGGAAatggagagagacatatgatagatgaatggatagatgtagatagatgata
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526109   0 + 64156825 C

a score=76764.000000
s hg38.chr19_GL949751v2_alt         757361 90 +  1002683 aataggtagatgatagata----ataggttatagatacatagatgatgattgattgattcatt----aatagatgagacatagagatgatgatgatga
s panTro4.chr19                   59707803 90 + 63644993 aataggtagatgatggata----attggttatagatacatagatgatgattgatttattcatt----aatagatgatacatagacatgatgatgatga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56651980 94 + 60714840 aataggtagatgatagata----ataggttataggtacatagatGATGATTGATTGACTCATTGATCAATAGATGATACATAGAGATGATGAGGATGA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    15362 90 -    21488 ggcaggtagatgatagata----ataggttgtagatacatagatgatgattgatggattcatt----aacggatgatacatagagaggatgatgatga
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s rheMac3.chr19                   60526109 98 + 64156825 aataggtagatggtagataacagataggttgtaggtacatagatgatgattgatggattgattgatagacagatgatacatagagataatgatgatga
i rheMac3.chr19                   C 0 C 0
s chlSab2.chr6                    47452412 62 + 50890351 aataggtaggtgatagataatggatgggttatagatacatagatgatgattgatagat------------------------------------atat
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T

a score=-14.000000
s hg38.chr19_GL949751v2_alt         757451 4 +  1002683 agac
s panTro4.chr19                   59707893 3 + 63644993 aga-
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56652074 3 + 60714840 aga-
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    15452 0 -    21488 C
e chlSab2.chr6                    47452474 0 + 50890351 C
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526207 0 + 64156825 C

a score=39605.000000
s hg38.chr19_GL949751v2_alt         757455 37 +  1002683 agatagatagataatacatagagatacagaggcagac
s panTro4.chr19                   59707896 30 + 63644993 -------tagataatacaaagagatagagaggcagac
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56652077 34 + 60714840 ---tagatagataatacatagagatagagaggcagac
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    15452 37 -    21488 agatagatagataatacatagagatagagaggcagac
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s rheMac3.chr19                   60526207 37 + 64156825 agatagacagatgatacatagagatatagaggcagac
i rheMac3.chr19                   C 0 C 0
s chlSab2.chr6                    47452474 37 + 50890351 agatacgtagatgatacatagagacagagaggcagac
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T

a score=55057.000000
s hg38.chr19_GL949751v2_alt         757492  98 +  1002683 a--tagagaaatcatagagagagagaga----tgatacatagatatagataatagatgattgatggatagat--------agacaattgat----ggataaatagatgatatatag
s panTro4.chr19                   59707926 100 + 63644993 aaagagagaaatcatagagagagagagagagatgacacatagatatagataatagattattgat----agat--------agacaattgac----agacaaatggatgatagaTAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56652111  98 + 60714840 aaagagagaaatcatagagagagaga------tgatacatagatatagataatagatgattgatggatagat--------agacaattgat----agataaatagatgatatatag
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    15489  99 -    21488 aaagagag-aatcatagagagagggaga----tgatacatagatatagataatagatgattgatggatggat--------agacaattgat----agataaatagatgatatatag
i nomLeu3.chr10_GL398297_2_random C 0 T 15588
s chlSab2.chr6                    47452511 106 + 50890351 agatagagagggaacagacaga----------tgatacacagatatagataatagatagatggtggatagatagagagacagaaaattgatacagagatagatacatgcaacatag
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=289410.000000
s hg38.chr19_GL949751v2_alt         757590 381 +  1002683 atatagatgacaggtagagaatttgtagataggcaccgaatagataaatagatagatcgatagataatagatagaaatatgcagaaagttatgaacAGGACACAAAGTGAGAAACTCAGAATT--AAAAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGAGAAAACATATCTAGAGGTGGGGAAGTGAGGTCAGAGACCTAAagagacagagaaggtggaaggaggaaatagacatgaagagcgatggg-gtagagggtgagagagagagagagagagCATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTG--AAGGGAGCTGTGACAAGGAAGATCCTCCCTGAGG
s panTro4.chr19                   59708026 380 + 63644993 ATATAGATGGCAGGTAGAGAATTTGTAGTTAGATACTGAatagataaatagatagatcaatagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTCAGATTT--AAAAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAGCAATCCAAAAAGGGAAAACATATCTAGAGGTGGGGAAGTGAGGTCAGACACCTagagagacagagaaggtggaaggaggaaatagacatgaagagagatggg--tgaagggtgagagagagcgagagag--CACTAGGCCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGGGAGGGGAGATGTGACAAGGAAGAACCTCCCTGAGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56652209 379 + 60714840 ataTAGAGGACAGGTAGAGAATTTGtagatagacactgaatagataaatagatagatcggtagata----atagaAATATGCAGAAAGTTATGAAGAGGACACAAAGTGAGAAACTCAGAATTTAAAAAAAAGTAACATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACATATCTAGAGGTGGGGAAGTGAGGTCAGAGACCTagagagacagagaaggtggaaggaggaaatagacatgaagagagatggg-gtggagggtgagagatagagagagag--CATTAGGCCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random        0 380 -    21488 ATatagatgacaggtagagaatttgtagatagacaccaaatagataaatagatagcttgatagataatagatagaAATATGCAGAAAGTTATGAACAGGACACAAAGTGAGAAACTCAGAATT--TAAAAAAGTAACATCAAATCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACATATCTAGAGGTTGGGAAGTGAGGTCagagacctagagagacagagaaggtggaaggaggaaatagacatgaagagagatgggggtggagggtgagagagagacagagag--CATTAGGCCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTG--AAGGCAGCTGTGACAAGGAAGAACCTCCCTGAGG
i nomLeu3.chr10_GL398297_2_random T 15588 C 0
s chlSab2.chr6                    47452617 373 + 50890351 ataCAGATTACagatagataattgatagattgataggtagtagatagatagatcgatcgatagataatagatagaAATGTGCAGAAGGTTATGAAGAAGACAGAAAGTTAGAAACTCAGAATTAAAGAAAAAGGAAGATCAAGTCAA-CAATCCAAGGAGGATCAGAGAGAAGAAAACAATACAAAAAGCGAAAACACACCTCGGGCTGGGGAAGTGAGGTCAGAGACCTagagagacagagaaagtggaaggaggaaacagacatgaagagagaTGGG-GTGGAGGGTGA--------CAGAGAG--CATTAGGTCATAGAGCAGGGGAGTGAGTTCTCAGCTCAGGTGTGAAGGGA-CTGTGACAAGGAAGAACCTCCCTGAAG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771739 621 + 49145316 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=273577.000000
s hg38.chr19_GL949751v2_alt         757971 273 +  1002683 AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCTGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCCGGAGCTCCTATGACATGTACCATCTATCCAGGGAAGGGGAGGCCCATGAACGTAGGCTCCCTGCAGGGACCAAGGTCAACGGAACATTCCAGGCCAACTTTCCTCTGGGCCCTGCCA------CCCATGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCATAC
s panTro4.chr19                   59708406 273 + 63644993 AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTTGGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCCAGAGCTCCTATGACATGTACCATCTATCCAGGGAGGAGGGGGGCCGTGAACGTAGGCTCCCTGCAGGGCCCAAGGTCAACGGAACATTCCAGGCCGACTTTTCTCTGGGCCCTGCCA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGACTCTCCCTAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56652588 273 + 60714840 AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCAGGCCCCAGGGTTCTGGCAGGAGAGAGCGTGACCTTGTCCTGCAGCTCCAGGAGCTCCTTTGACATCTACCATCTACCCAGGGAGGGGAAGGCTCATGAACTTAGGCTCCCTGCAGTGCCCAAGGTCAACGGAACATTCCAGGCTGACTTTCCTCTGGGCCCTGCCA------CCCACGGAGGGACCTACAGATGCTTCGGCTGTTTCCGTGACTCTCCCTAT
i ponAbe2.chr19                   C 0 I 20165
s nomLeu3.chr10_GL398297_2_random      380 273 -    21488 AAACTGCCTCTTCTCCTTCCAGGTCTATATGGGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCATGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCAGGAGCTCCTATGACGTGTACCATCTATCCAGAGAGGAGGGGGGCCATGAACGTAGGCTCTCTGCAGTGCTCAAGGTCAACGGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGCCA------CTCACGGAGAGGCCTACAAATGCTTCGGCTCTTTCCGTGACTCTCCCTAC
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47452990 273 + 50890351 AAACTGCCTCTTCTCCTTCCAGGTCTATATGACAAACCTTCTCTCTCAGCCCAGCCAGGCCCCACAGTTCAGGCAGGAGAGAACGTGACCTTGTCCTGCAGCTCCCAGACCTTGTTTGACATGTACCATCTATCCAGGGAGGGGGAGGCCCGTGACCTTAGGCTCCCTGCAGTGCCAAACATCAATGGAACATTCCAGGCCGACTTCTCTCTGGGCCCTGCCA------CCAACGGAGGAACCTACAGATGCTTTGGTTCTTTCCATATCGCACCCTAC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772360 279 + 49145316 AATCAGCCTCTTTTCCTCCCAGGAAAACACAAAAAGCCTTCTCTCTCCACCCAGGAGGACCCCAGGATGGGGAGTGGAGAGAACGTGACGTTATTCTGCATCTCTGAAATCTCATTTGACCGGTACCATCTGTGGAGAGAGGGGGCTCCTTATGGCCAGTGGCTCAGTGGAGGTCAGGGACACAGGGGAGCATTCCAGGCCAACTTTTCTGTGGGCCTCGCAACGCCAGCCCATGGAGGGACCTATAGATGCTACGGTTCTTTCAATGCCTCCCCCTAT
i calJac3.chr22                   I 621 C 0
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=263923.000000
s hg38.chr19_GL949751v2_alt         758244 314 +  1002683 GAGTGGTCAAAGTCAAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAGCCCATGGCTGTCCCATGTCCTAT---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTG--------------------ATGATGGAGA----GAAGCATGGACAGATGC--AG--AGAGAAGACGCAGCCTCGGTGTGAGGGAGGGATCAGGGCACAGGATGGCCGACAGGGCACCTCCAAACCCTCCTACATGGCCTGCATGGAGGCCCACGGCCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGAGAGACCCAG--AGGAGGG-AGACTGGGCTCAGTTTG
s panTro4.chr19                   59708679 315 + 63644993 GAGTGGTCAGATCCGAGTGACCCACTGCTTGTTTCCGTCACAGGTGAGGAAAGCCCATGCCTGTCCCATGTCCTAT---------GATCCTAGAGCCTTAGCTGAGGAGCTTCCTGCTG--------------------ATGATGGAGA----GAAGCATGGACAGATGC--AG--AGAGAAGATGCAGCCTCGGTGTGAGGGAGGGATCAGGGCGCAGGATGGCAGACAGGGCACCTCCAAACCCTCCTACACGGCCTGCATGGAGGCCCGCGGCCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCAGTCAGGAGAGACCCAG--AGAAGGGGAGACTGGGCTCAGTTTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56673026 310 + 60714840 GAGTGGTCAGACCCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAAGCCCATGTCTGTCCCATGTCTTCT---------GATCCTAAAGCCATAGCTGAGGAGCTTCCTGCTG--------------------ATGATGGAAA----GAAGGATGAACAGATGC--AG--AGAGAAGACGAAGCCTGGGTGTGAGGGCGGGATCAGGGTGCACGATGGCAGACA-AGCACCTCCAAACCCTCCTGCATGGCCTGCATGGAGG-CCATGGTCAGGG-TCCAGGCACCCAGGCAGATGGAGAAACTTATCA-GACAGACCCAG--AGAAGGG-AGACTGGGCTCAGTTTG
i ponAbe2.chr19                   I 20165 T 36735
s nomLeu3.chr10_GL398297_2_random      653 316 -    21488 GAGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGAAAACACCCTGCTTGTCCCATGTCTTGT---------GATCCTAGAGCCATAACTGAGGAGCTTCCTGCTG--------------------ATGGTGGAGA----GAAGGATGGACAGATGCCGAG--AGAGAAGACAAAGCCTGGGTGTAAGGGCGGGGTCAGGGCACGGGATGGCAGACAGGACACCTCCAAACCCTCCTGTACGGCCTGCATGGATGCCTGCAGTCAGGGTTCCAGGCACCCAGGCAGATGGAGAAAGCAGTCAGGATAGACCCAG--AGAAGGG-AGACTGGGCTCAGTTTG
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47453263 313 + 50890351 GAGTGGTCAGACCCGAGTGACCCACTGCCCGTTTCTGTCACAGGTGAGGAAACGCCATGCCTGTCCCATGTCTTAT---------GATCCCAGAGCCATAG-TGAGGAACTTGCTGCTG--------------------ATGATGGAGA----GAAGCATGGACAGGTTC--AG--AGAGAAGACCAAGCCTCAGTGTGAGGGCAGGATCAGGACGCAGGATGGCAGAGAGGGCACCTCCAAACCCTCCTGCATGGCCTGTGTGGTGGTCCGCGGTCAGGGCTCCAGGCCCCCAGGCAGATGGAGAAACTGGTCAGGACAGACCCAG--AGGAGGG-AGACTGGGCTCAGTTTG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772639 308 + 49145316 GAGTGGTCGGCCCCCAGTGAGCCCCTGCACCTTTCTGTCACAGGTGAGG--AGCCCACACCTGCCACCTGTCCTGTTGTCCACTAAGTCCCAGAGCCATACCAGAGGGGCATCCCACTGGGCACACAGGGGCATTAGGTATTCTGGACAAAATGAAGCAGTGAAAAATAC--AGACAGGGATGA-ACAGGCTGAGTGGGATGGGGCTGTCAGGGTGCAGGGC-ATAGACAGGGCAGCTCTGCGCCCTCC------------------GCCC----------CTCC-----------TACATGAAGAAAGAGGTCAGGGCAAACACAGGTGGAGGTG-AGGCCAGATGGAGTTTG
i calJac3.chr22                   C 0 C 0
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=49314.000000
s hg38.chr19_GL949751v2_alt         758558 47 +  1002683 GGGAGATCAGAGGTTCCCTCAGCCCCTCAACC-TTACCCATTTCCCAG-
s panTro4.chr19                   59708994 47 + 63644993 GGGAGATCAGAGGTTCCCTCAGCCCCTCAACA-TTACCCATTTCCCAG-
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56636601 47 + 60714840 GGGAGATCAGAGGTTCTCTCAGCCCCTCAACC-TTACCCATTTCCCAG-
i ponAbe2.chr19                   T 36735 I 37046
s nomLeu3.chr10_GL398297_2_random      969 48 -    21488 GGGAGATCAGAGGTTCCCTCAGCCCCTCAACTGTTACCCATTTCACAG-
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47453576 47 + 50890351 GGGAGATCAGAGGTTCCCTCAGCCCCTCAACC-TTACCCATTTCCCTG-
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772947 48 + 49145316 TTGAGATCAGAGGTTGCCTCAGCCCCTCGCCC-TTTTCCATTTTCTCCG
i calJac3.chr22                   C 0 C 0
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=16300.000000
s hg38.chr19_GL949751v2_alt         758605 12 +  1002683 AAGCCCATCCTG
s panTro4.chr19                   59709041 12 + 63644993 AAGCCCATCCTG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56673694 12 + 60714840 AAGCCCATCCTG
i ponAbe2.chr19                   I 37046 C 0
s nomLeu3.chr10_GL398297_2_random     1017 12 -    21488 AAGCCCATCCTG
i nomLeu3.chr10_GL398297_2_random C 0 I 15579
s chlSab2.chr6                    47453623 12 + 50890351 AAGCCCATCCTG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772995 12 + 49145316 AAGCCCCTCCTG
i calJac3.chr22                   C 0 C 0
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=25073.000000
s hg38.chr19_GL949751v2_alt         758617 24 +  1002683 GCCTCTCACCCACACAGAGATGTC
s panTro4.chr19                   59709053 24 + 63644993 GCCTCTCACCTACACAGAGATGTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56673706 24 + 60714840 GCCTCTCACCCACAGAGAGATGTC
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    16608 24 -    21488 GCCTCTCACCCACACGGAGATGTC
i nomLeu3.chr10_GL398297_2_random I 15579 C 0
s chlSab2.chr6                    47453635 24 + 50890351 GCCTCTCACCCACACAGACATATC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45773007 23 + 49145316 ACCCCTCACC-ACAGAGAGATTTC
i calJac3.chr22                   C 0 T 3104
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=53192.000000
s hg38.chr19_GL949751v2_alt         758641 69 +  1002683 ATCACCAGCAACCCCTACACCCTTTACTTTTC-TTTGAAGAAATATTTATTGAGGATAAATATACCTATA
s panTro4.chr19                   59709077 70 + 63644993 ATCACCAGCAACCCCTACACCCTTTTCTTTTTGTTTGAAAAAATATTTATTGAGGTTAAATATACCTATA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56673730 70 + 60714840 ATCACCAGCAACCCCTACACCCTTTTCTTTTCCTTCGAAAAAATGCTGATTGAGGTTAAATGTACCTATA
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    16632 70 -    21488 ATCACCAGCAACCCTTACACCCTTTTCTTTTTGTTTGAAAAAATAtttattgtgattaaatatacctata
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47453659 70 + 50890351 ATCACCAGCAACCCTTGCACCTTTTTCTTTTCATTTGAAAAAATATTTGttgaggttaaatatacctata
i chlSab2.chr6                    C 0 T 58301
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=15210.000000
s hg38.chr19_GL949751v2_alt         758710 23 +  1002683 TAGCTTACCACTTTTAACAtttt--------
s panTro4.chr19                   59709147 23 + 63644993 TAGCTTACCACCTTTAACAtttt--------
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56673800 23 + 60714840 TAATTTACCAACTTTACCATTTT--------
i ponAbe2.chr19                   C 0 T 37044
s nomLeu3.chr10_GL398297_2_random    16702 23 -    21488 tagcttaccacctttaacatttt--------
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47395428 31 + 50890351 tagtttaccacttttaacatttttttttttt
i chlSab2.chr6                    T 58301 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=334451.000000
s hg38.chr19_GL949751v2_alt         758733 464 +  1002683 ttttt------gaggtggagtcta--gctgtgtcccctatgctggagtgcagtggcacaatctcagctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagccacctgagtagctggtgctacaggcacgcaccaccacgccaggctactttttgtatttttagtagggaggtggtttcaccatgttggtcgagctggtctcgaactcctgaccaagtgatccacccgcatctgcctcccaaagtgctgggattacaggcatgggccaccgcgcccagccACATTTACCATTTTTAAGTGTAAAGTCTAGTGGTcataaatacat--------------------ttatatacatatata--tatatatacat---------------------TTTTTTTAccctccacccttttcttcctgtcctccagtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggtgagaaatgggaa
s panTro4.chr19                   59709170 465 + 63644993 tttttttttttgaggcagagtcta--gctctttcccctatgctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagccgcctgagtaactggtactacaggcatgcatcaccatgccaggctaccttttgtatttttag-agagagggggttttaccatgttggttgagatggtcgctaattcctgaccacgtgatccacgcgcctcagcctcccaaagtgctgggattacaggcatgagccaccacacccggccACGTTTACCATTTTTAAGTGTAAGGTCTAGTGGTCATAAATACAT--------------------------ACATATATAATTGTTTCTTTGT---------------------TTGTTTTATcctccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggtgagaaatgagaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56636779 466 + 60714840 ttttt------ttggtggagtcta--gctctgtcccctatgctggagtgcagtggcacaatctcagctcactgcaacctccgcctcctgggttcaaacgattctcctacctcagccacctgagtagctggtactacaggcacgcaccaccatgccaggctactttttgtattttgagtagagagggggtttcaccatgttggtcgagctggtctcgaactcctgaccacgtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccacttttaccatttttaagtgtaaattctagtggtcataaatacat--------------------ttataTATATATAttttttttttttttt---------------------tttttttAccctccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggggagaaataggaa
i ponAbe2.chr19                   T 37044 C 0
s nomLeu3.chr10_GL398297_2_random    16725 469 -    21488 ttttt------gaggtggagtcta--gctctgtcccctacgctggagtgcagtggcacaatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagccacctgagtagctggtaccacaggtgcacaccaccatgccagcttactttct-tatttttagtagg--gggggtttcaccctgttgttcaagctggtctcgaactcctgaccaggtgatccaccc------acctcccaaagtgctgggattataggcatgagccaacgcgcccggccacgtttaccatttttaagtgtaaagcctagtggtcataaatacat----acatt----tgtttgtttgtttgtttgtttgtttgtttgtttgt---------------------ttgtttTAccctccacccttttctccctggcctctggtagccaccattctactctctcctttcatgagatccaccttttagctcttgtgtatgggtgagaaatgggaa
i nomLeu3.chr10_GL398297_2_random C 0 T 15772
s chlSab2.chr6                    47395459 509 + 50890351 ttttt------gaggcggagtctcttgctctgtcccctatgctggagtacagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagcaattatcctgcctcagccacctgagtagccggtactacaggcatgcaccaccacgccaggctaatttttgtatttttagtagagacagggtttcactatattggtcgggttggtctcgaactcctgaccacgtgatccgcctgcctcagcctcccgaagtgctgggattacaggtgtaagccaccatgccaagccacctttaccatttttaagtgtaaagtctagtggtcataaatacatttataCATTTAtgtgtgtgtgtgtgtatatatatgtgtgtatatatatgtgtgtgtgtgtatatatatatTTTTTAAccttcctcccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcccgcctatgggtgagaaatggaaa
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=6039.000000
s hg38.chr19_GL949751v2_alt         759197 12 +  1002683 tctttgtaatga
s panTro4.chr19                   59709635 12 + 63644993 tctttgtaatga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637245 12 + 60714840 tctttgtaatga
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47395968 12 + 50890351 tgtttgtaatga
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    17194 15772 -    21488 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=209450.000000
s hg38.chr19_GL949751v2_alt         759209 251 +  1002683 cctccagttccatccatgtggctgcaaatgacaggatgttattctttctatggatgagtagtctccactatgcgtatgtactacattctctctatccatttacccactgatgggcaggtaggttgactcctcatcttggctactgtgaacagtgctgcaccaatcatacgagtgcagatatcacttcgatatattgatttactttcctttggatataaacccagtagtgaaattgctggatactatgaaag
s panTro4.chr19                   59709647 251 + 63644993 cttccagttccatccatgtggctgcaaatatcaggatgttattctttctatggatgagtagtctccactgtgtgaatgtactacattctctctatccattcatccactgacgggcaggtaggttgactccacatcttggctactgtgaacagtgctgcaccaatcagacgagtgcagatatcacttcgatatattgatttactttcctttggatataaacccagtagtgaaattgctggatactatgaaag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637257 250 + 60714840 cttcgagttccatccatgtggctgcgaatgacaggatgttattctttctatggatgagtagtctccactgtgcgtatgtactacagt-tctctatccattcacccactgatgggcaggtaagttgactccacatcttggctacggtgaacagtgctgcaccaatcatacgagtgcagatatcacttcgatatattgatttcctttcctttggatataaacccagtagtgaaattgctggatactatgaaag
i ponAbe2.chr19                   C 0 T 55708
s nomLeu3.chr10_GL398297_2_random     1422 249 -    21488 cctccagttccatccatgtgggtgcaaatgacagggtgttattgtttctatggatgagtagtctccactgtgtg--tgtactacattctctctatccattcacccactgacgggcaggtaggttgactccacatcttggctactgtgaacagtgctggaacagtcatacgagtgcagatatcacttcgatatattgatttcctttccttcggatataaacccagtagtgaaattgctggatactatgaaag
i nomLeu3.chr10_GL398297_2_random T 15772 C 0
s chlSab2.chr6                    47395980 251 + 50890351 gctccagttccatccatgtggctgcaaatgtcaggatgttattgtctctatagatgagtagtctccactgtgtgtatgtactacattctctctatccattcacccactgaggggcaggtaggttgtctccacatcttggctactgtgaactgtgctggaccaatcatacgagtgcagatatcacttcgatgtactgatttcctttcctttggatataaacccagtagtgaaattgctggatactatgaaag
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=6550.000000
s hg38.chr19_GL949751v2_alt         759460 7 +  1002683 ttctctt
s panTro4.chr19                   59709898 7 + 63644993 ttctctt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56581799 7 + 60714840 ttctctt
i ponAbe2.chr19                   T 55708 C 0
s nomLeu3.chr10_GL398297_2_random     1671 7 -    21488 ttctctt
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47396231 7 + 50890351 ttctctt
i chlSab2.chr6                    C 0 I 54
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=1638.000000
s hg38.chr19_GL949751v2_alt         759467 3 +  1002683 ttt
s panTro4.chr19                   59709905 3 + 63644993 ttt
i panTro4.chr19                   C 0 I 63589
s ponAbe2.chr19                   56581806 3 + 60714840 ttt
i ponAbe2.chr19                   C 0 I 16
s nomLeu3.chr10_GL398297_2_random     1678 3 -    21488 ttt
i nomLeu3.chr10_GL398297_2_random C 0 I 16
e calJac3.chr22                   45773030 3104 + 49145316 T
e chlSab2.chr6                    47396238 54 + 50890351 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=12596.000000
s hg38.chr19_GL949751v2_alt         759470 37 +  1002683 ttctttttttcttttttgagaaagagtttccctcctt
s panTro4.chr19                   59773497 37 + 63644993 ttttttttttcttttttgagaaagagtttccctcctt
i panTro4.chr19                   I 63589 C 0
s ponAbe2.chr19                   56581825 35 + 60714840 tttttgtttttgtttttgagac--actttccctctgt
i ponAbe2.chr19                   I 16 I 55696
s nomLeu3.chr10_GL398297_2_random     1697 35 -    21488 tttttgtttttgtttttgagac--agtttccctctgt
i nomLeu3.chr10_GL398297_2_random I 16 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e chlSab2.chr6                    47396238 54 + 50890351 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=91.000000
s hg38.chr19_GL949751v2_alt         759507 1 +  1002683 a
s panTro4.chr19                   59773534 1 + 63644993 a
i panTro4.chr19                   C 0 T 63577
e ponAbe2.chr19                   56581860 55696 + 60714840 I
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random     1732 0 -    21488 C
e chlSab2.chr6                    47396238 54 + 50890351 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=235594.000000
s hg38.chr19_GL949751v2_alt         759508 296 +  1002683 gcccaagctggagtcaaagtggtgcgaccttggctcattgcaacctacgcctcctgggttcaaatgattttcctgcctcagcctccctagtagctgggattacaggtgcacaccaccatgcctggctactttttggtttttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcccgcctcagtctcccaaagtgccgggattacaggcatgatccaccgcacccaacctctttttagttctttaaaggacttccatacttt
s panTro4.chr19                   59709958 296 + 63644993 tcccaggctggagtacaagtgatgtgatcttggctcattgcaacctccacctcctgggttcaaatgattttcctgcctcagcctccctactagctgggattacaggtgcacgccaccatgcctggctaccttttggtttttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcccgccccggtctcacaaagtgctgggattacaggcatgatccacctcacccaacctctttttagttctttaaaggacttccacacttt
i panTro4.chr19                   T 63577 C 0
s ponAbe2.chr19                   56637556 296 + 60714840 gcccaggctggagtacaagtgatgtgatcttggctcattgcaacctccgcctcctgggttcaaacgattttcctgcctcagcctccttagtagcagggattacaggtgcacacccccatgcctggctactttttcttttttttagtatagatggggtttccccatgttggctgagctgctctcaaactcatgacctcaactgaggtgcccgcctcggtgtcacaaagtgctgggattacaggcatgatccaccgcacccaacctctttttagttatttaaaggacttccatacttt
i ponAbe2.chr19                   I 55696 C 0
s nomLeu3.chr10_GL398297_2_random     1732 296 -    21488 gcccaggctggagtgcaagtgatgtgatcttggcccattgcaacctccgcctcctgggttcagacgattttcctgcctcaccctccccagaagcaggcattacaggtgcaagccaccatgcttggctactttttatattttttagtatagatggggtttccccatgttggctgggctgctctcaaactcatgacctcaactgaggtgcctgcctcggtctcgcaaagtgctgggattacaggcatgatccaccgcacccaacctctttttagttatttaaaggacttccatgcttt
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47396292 288 + 50890351 gcccaggctggagttcacgtgatgcgatc--------ttgcaacctccacctcctgggttcaaacgattttcctgcctcagcctccctagtagctgagattacaggtgcatgccactatgcctggctactttttgtactttttagtacagatggggtttccccatgttggccaggctgctctcaaactcatgacctcaagcgaggtgcccgtctcgctctcccaaagtgttgggattacaggcatgagccaccatgcccagcctctttttagtttcttaaagaacttccatacttt
i chlSab2.chr6                    I 54 I 42340
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=63063.000000
s hg38.chr19_GL949751v2_alt         759804 125 +  1002683 tctccgtaatggctgtactaatttacactcctcccaacagggtaccagggttctcctttctctaccaccttgccagcatttcttttgcctgtcttgcagctaaaagcc--------attttat-----------------------------------tttatttcat
s panTro4.chr19                   59710254 156 + 63644993 tctccataatggctgtactaatttacactcctaccaacaggctaccagggttctcctttctctac-accttgccagcatttgttttgcctgtcttgcagctaaaagcc--------attttatattatt---ttattttattttattttatttttgttttcattttat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637852 155 + 60714840 tctccgtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctacccccttgccagcatttcttttgcctgtcttgcagctaaaagcc--------attttattttatt---ttattttattttattttattttat--tttattttat
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2028 166 -    21488 tctccgtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctaccaccttgccagcatttgttttccctgtcttgcagctaaaagcctttattttattttattttattttattattttattttattttattttat--tttattttat
i nomLeu3.chr10_GL398297_2_random C 0 I 15751
e calJac3.chr22                   45773030 3104 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=115478.000000
s hg38.chr19_GL949751v2_alt         759929 232 +  1002683 tttattttgagatggagttttgctcttctcacccaggctggagtgcagtggcgcgatctcggctcaccacaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctggaattacaggcacacgccaccacgcccgactaatttttgtatttttagtagagacagtgtttctctatgtgggtcatactggtctcaaactcccgaccttatgagat
s panTro4.chr19                   59710410 232 + 63644993 tttattttgagatggattttcactcttttcacccaggctggagtgcagtggcacgatctcggctcaccacaacctccacctcccaggttcaagcaattctcccgcctcagcctaccaagtagctgggattacaggcatgtgccaccatgcccggctactttttgtatttttagtagagacagagtttctccatgtgggtcaggctggtctcaaactcccgacctcaggagat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638007 232 + 60714840 tttattttgagatggagtttcgctcttgtcacctaggctggagtgcagtggcgcgatctcagctcaccgcaacctccacctcccaggttccagtgattctcctgccccagcctcccgagtagctgggattacaggcacatgcaaccacgcccggctaatttttctatttttggtagagacagtgtttctccatgtgggtcaggctggtctcaaactcccgacctcaggagat
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    17945 232 -    21488 tttattttaagatggagttttgctcttgtcacccaggctggagtgcagtggcgcgatcttggctcaccgcaacctccatctcccaggttcaagtgattctcctgccttagcctcccaagtagctggaattacaggcacacgccaccacgcgcggctaatttttgtatttttagtagagacagtgtttctccatgtgggtcaggctggtctcaaactcccgacctcaggagat
i nomLeu3.chr10_GL398297_2_random I 15751 T 15751
e calJac3.chr22                   45773030 3104 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=77931.000000
s hg38.chr19_GL949751v2_alt         760161 161 +  1002683 tcacccacctcaggctctcaaagttctaggatgacaaacgtgagccacctcacccggcctaaaagccattttaatggggtgagatgaaaactcactttgaatttaatttgcgtttctctgatgatgagtgatactgagcagtttttcgtatgtggggaaat
s panTro4.chr19                   59710642 161 + 63644993 tcgcccacctcgggctctcaaagttctaggatgacagatgtaagccaccatgcccgacctaaaagccatgttaatggggtgagatgaaaactcacttcaattttaatttgcatttctctgatgatgagtgataacgagcactttttcatatgcggggaaat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638239 161 + 60714840 tcgcccacctcaggctctcaaagttctaggatgatagaggtgagccaccacgctcggcctaaaagccattttaatggggtgagatgaaaactcacttcgattttcatttgcatttctctgatgatgagtgatactgagcacttcttcatatgcggggaaat
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2426 160 -    21488 ttgcccacctc-ggctctcaaagatctaggatgacagatgtgagccaccacgcccggcctaaaagccattttaatggggtgagatgaaaactcactttgattttaatttgcatttctctgatgatgagtgatactgagcactttttcatatgcagggaaat
i nomLeu3.chr10_GL398297_2_random T 15751 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e chlSab2.chr6                    47396580 42340 + 50890351 I
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=254944.000000
s hg38.chr19_GL949751v2_alt         760322 327 +  1002683 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagttattaatcccatctcagatgcatagtttgcacatatttgctcccaatctgtgggttgtctcttcactttgttggtt-tatttttagcggtgcagaagttgcttagtatgaggtaatcccaatggtcta-tttttgcttcgattacttgtgttttcaaggtttaaaacaaaatgtctttcttcagacaaatgtcctggagcatttccccaatattttgttctacgtgtttcataggttcaggccttagactcacatc
s panTro4.chr19                   59710803 327 + 63644993 ttcatgtctttcgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagtcattaatcccgtctcagaagcatagtttgcacatagttgctcccagtctgtgggttgtctcttcactttgttggtt-tatctttagcggcgcagaagttgctgagtttgatgtaatcccaatggtcta-tttttgcctcgattacttctgttttgaaggtttaaaacaaaatgtcttccttcagacaaatgtcatggagcatttccccaatattttcttctacgtgtttcataggttctggacttagactcacatc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638400 328 + 60714840 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagttattaatcccgtctcagatgcatagtttgcacatatttactcccaatgtgtgccttgtctcttcacgttgttggtt-tatctttagtggcgcagaagttgcttagtttgatgtaatcccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaagtgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacgtgtttcataggttcagcccttagactcacatc
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2586 328 -    21488 ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttctttgagcttcttatatttctagttattaatcttgtctcagatgcatagtttgcatgtatttgctcccaatctgtgggttgtctcttcactttgttggtt-tatctttagcagtgcagaagttgcttagtttgatgtaaccccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaaatgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacatgtctcataggttcaggccttagactcacatc
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47438920 329 + 50890351 ttcatgtcttttgctcattttttagttaaattctttgttttattgagttatgtgagcttcttatatttctagttataaatcccgtctcagatgcatagtttgcaattattggctcccattctgtgggttgtctcttcactttgttggttatttgttttgcagtgcagaagctgcttagtttgatataatccctgtggtctgttttttgctttgattacttgtgtttttgaagtattaaacaaaatgtcttttctcagacaaatgtcctgaagcatttccctaatatttccttctacaaatttcataggttcaggacttagactcatgta
i chlSab2.chr6                    I 42340 I 14905
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=14652.000000
s hg38.chr19_GL949751v2_alt         760649 22 +  1002683 tttaatccattttcatttga-tt-
s panTro4.chr19                   59711130 22 + 63644993 tttaatccattttcatttga-tt-
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638728 22 + 60714840 tttaatccattttcatttga-tt-
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random     2914 23 -    21488 tttaatccattttcatttgattt-
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47454154 23 + 50890351 tttaatccattttgatttca-ctt
i chlSab2.chr6                    I 14905 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47714091 43287 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=494725.000000
s hg38.chr19_GL949751v2_alt         760671 435 +  1002683 tttgtgtatggtgacaggtagaggtgcagtttcattcctctgcatgtagatgtccaggtttccctgcactgtttattgaaaagactgtcctttcctgattgtgagttcttggcatctttgtcaaagtccattggatgggctgggcttggtggctaacacctgcaatttcagcactttgggagcccgaggtgggtggatcacctgaggccaggagttcaagattagtctggccgacgtgatgaaacatcatctccactaaaaatataaaaattagctgagcatggtggtcagcacctgtaataccactactcaggagtttgaggcaagagaat-gattgaacccaggaggctgaggttgcagtgaaccgagattgcacctttgcactccagcctgagtgacagagcaagactccatctcaaa--ag-aaaaaataaaaaa---
s panTro4.chr19                   59711152 437 + 63644993 tttctgtatggtgacaggtagaggtgcagtttcattcctctgcatgtagatgtccacatttccctgcactgtttattgaaaaggctgtcctttcctaattgtgagttcttgacacctctgtcaaagtccattggatgggctgggcatggtggctaacacctgcaattccagcactttaggaggccgaggcaggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacatcatctccactaagtatataaaaattagctgagcatggtggtcagcacctgtaataccactactcaggagtttgagtcaagagaattgattgaactcagcaggctgaggttgcagtgaaccgagattgcacctctgcactccagcctgggtgacagaacgagattccatcctaaa--agcaaaaaaaaaaaaa---
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638750 436 + 60714840 tttgtgtatggtgacaggtagaggtgcagtttcattcttctgcatgtagatgtgcaggtttccctgcactgttgattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccagtggatgggctgggcatggtggctaacacctgcaattgcagcactttgggagaccgaggcaggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacatcgtctctactaaaaatacaaaaattagctgagcatggtggtcagcccctgtaataccactactcaagggtttgaggtgagaaaattgattgaacccaggaggctgaggttgcagtgaaccgagattgcaactctgcactccagcctgggtgacagagtgagactccatctcaaa--ag-aaaaaataaaaaa---
i ponAbe2.chr19                   C 0 I 36433
s nomLeu3.chr10_GL398297_2_random     2937 436 -    21488 tttgtgtatggtgacaggtagaggtgcagtttcattcctatgcatgtagatatccagttttccccgcactgtttattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccattggatgggctgggcatggtggctaacacctgcaattccagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacaccgtctctactaaaaatacaaaaattagctgagcatggtggtcagcacctgtaataccactactcgggagtttgaggcgagagaattgattgaacccaggaggctgagtttacagtgaaccgagattgcacctctgcactccagcctgggtgacagagcgagactctatctcaaa--ag-aaaaaataaaaaa---
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s papAnu2.chr19                   47757378 438 + 51301725 TTTGTGAATGGTGAGAGGTACAGGTGCAATGTCATTCC-CTGCATGTAGATAACCCATTTTCCCCGCAtcgtttattgaaaagactgtcctttcctgaTTGTaggttcttgacacctttgtcaaaatgcattgtattggctgggcatggtggctcacacctgcagtcccagcactttcagaggccaaggtgggtggatcacctgagaccaggagttcgaggcccgcctggccaacatagtaaaaccctgtctccactaaaagtacaaaacttagctgagcatggtggtcaGCGCCTGTAATACCACTACTCGAgtgtctgaggcaagagaattgcttgaattcaggagacggaggttgctgtgagccgagattgcacctctacactccagcctcggtgacagagcaagattccatctcaaa--aa-aaaaaaaaaaaaaaag
i papAnu2.chr19                   I 43287 C 0
s chlSab2.chr6                    47454177 440 + 50890351 tttgtgaatggtgagaggtagaggtgcaatttcattcc-ctgcatgtaggtaaccagttttccccacatcgtttattgaaaagtctgtcctttcctgattgtacgttcttggcacctttgtcaaaatgcattggattggctgggcatggtggctcacacctgcaatcccagcacattcagaggccaaggtgggtagatcacctgagaccaggagttcgaggcccgcctggccaacatagtaaaaccctgtctccactaaaagtacaaaaattagctgagcatggtggtcagctcctgtaatatcactactcaagagtctgaggcaagagaattgcttgaattcaggaggcggaggttgcagtgagtcaagaatgcacctctgcactccagtctgggtgacagagcaagattccatctcaaaacaa-aacaaaaaaaaaaaag
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=997457.000000
s hg38.chr19_GL949751v2_alt         761106 897 +  1002683 ccattggatgtaaatgcatggaatatatctgtgttattcattctgctccgttgttctatgtgcctttctttatgccagtgtcatgctattttgcttactacagctctgtaacatattttgagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGTGTCACATAAAAAAATTATGGAAAAAAGGATCCCAGGACTCCCAGGGCCCAATATTAGATAACAGAGTGTTGGCCATGAACCATCCTCAAAGATTTCCACTGAGTGGAGGACAGAAACCCTCATTTCCTCACCTCTCTCCTGTCTCATGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACTGAACCAAGCTCCGAAACCGGTGAGTACAGAA-CCCTCTTATATCCGCTTTTGGAAACCTGGGGAGGTGGAAACCTTGGATTCAGGCGTTGACTCAGCATCTCACAGCTCTGACATTGTACACCTGTCTTCCACCATCTC--CGAACTCCAGATACTCCTACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTCATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAGG-AAAAATGCAATGTTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGAGACTTGAGAGAGGGAAGGGAAGGGAACATCTGATGAGGGCGAGGTGTTT-TAGAGAAGTTCCACTTGCCAAGGAATGAGCTCCTGTAGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACAGAGAACAGAGCTCATGCACAC-----ACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCT
s panTro4.chr19                   59711589 897 + 63644993 ccattggatgtaaattcatggattatatctgtgttcttcattctgctccattgttctatgtgcctttcttcatgccaacatcatgctgttttgcttactatgactctgtaatatattttgagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGAGCATCACATACAAAAATTATGGAAAAAAGAATCCCAAGACTCCCAGGGCCCAACATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCTTTGAGTAGAGGACAGGCAGCCTCATTTCCTGACCTCTCTACTGTCTCGTGTTCTAGAAAACCCTTCAAATAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGAAacttggagaagtggaagccttggattcaggcattgactcagcatctcgcagatctgacattgtgcgcctgtcttccaccatctc--tgaactccagattctccaacagcaaaagggatCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTCATCTCTCATTTTATGGAGCTCAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAGG-AAAAATGCAGTGTTTGTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGACTTGAGAGAGGGAAGGGAAGGAAACATCTGATGAGGGCGAGGTGTTT-TAGAGAAGTTGCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACAGAGAACAGAGCTCATGCACAC-----ACACTTCGGCTCACTGACTCATTCAGCCACAGCCCCATGCT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56675619 893 + 60714840 ccattggatgtaaacgggtggattacatctgtgttcttcattctgctccattgtttcatgtgcttttctttacgccaatgtcatgctattttgcttactacagctctgtaacatattttcaagtcaggtagtgtgatgctcctgttttctccttATACCTTGAAGTCTCAAGACAGTTGGTGTCACGTACAATGATTATGGGGAAGGGGATGCCAGGATTACCAGGGCCCAACATTAGATAATAGAATGTTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAAGACAGGCATCCTCACTGCCACACCTCTCTCCTGTCCCGTGTTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACTGAACCAAGCTTCAAAACTGGTAAGTGAAGGACCCCTCTTATCTCTGCTTTTGGAAACCTGGggaggcag-agccttggattcaagcgttggctcagcacctgccagctctgtgattgtgggcctgtcttccattgtctc---gaaccccagacactccaacagtgaaaaggATCTGGGCCCAGCACAGGGCTCAGTGAAATCTCTTCATCTCTAATTTTCTTCTGCTGAGACCT----CAGGGTAAAAGGATGAGTGCAAATCAGACGTTCTTCTCAGG-AAAAATGCAGTGTTTGTTCTGCCTGCACTCCTAACCGGAGGACAAACGCCTGGGGGCTTGACACGGGGAAGGAAGGGGAATATTTT-TGAGGGTGGGGTGTTTGTAGAGAAGTTCTACTTGCCAAGGAATGAGCTCCTGTCTGTCATGATCCAACCCTGGTTGACTTAGCAGAGCAAGAGCTTTGCAGTAAGAGAGAACGTAGTTCATCCACACACATGACACTTC----CACTCACTCATTCAGCCACTGCCCCATGCT
i ponAbe2.chr19                   I 36433 C 0
s nomLeu3.chr10_GL398297_2_random     3373 898 -    21488 ccattagatgtaaatgcgtggattatatctgtgttattcattctgctccattgttctatgtgcctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacatatttttagatcaggtagtgtgatgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGCATCACATATAAAAACTATGGAAAAAAGGATCCCAGGACTCCCCAGGCCCAATATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAGGACAGACACTCTCATTTCCTCACCTCTCTCCTGTCTCGTGTTCTAGGAAACCCTTCAAACAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTACAGAA-CCCTCTTATATCTGCTTTTGGAAACCTGGGGAGGTGGAAGCCTTGGATGCAGGCGTTGACTCAGCATCCCACAGCTCTGACATCGTGTGCCTGTCTTCAACCATCTC--TGAACTCCAGATACTCCAACAGCGAAAGGGATCTGGGCCCAACACAGGGCTCAGTGAAATCTCTTAATCTCTCATTTTATGGAGCTGAGACCTCCTACAAGCTAGAAGAATGATTGCCAATCTGACATCCTTCTCAGGAAAAAATGCAGTGTTTGTTCTGCCTTCATTCCAAACTGGAGGATAAATTCCTGAGGGCTTGAGAGAGGGAAGAGAAGGGAACATCTGACGAGGGAGAGGTGTTT-TAGAGAAGTTCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACACAGAACAGAGCTCATGCACGT-----ACACTTCGACTCACTGACTCATTCGGCCGCGGCCCCATGTT
i nomLeu3.chr10_GL398297_2_random C 0 I 15604
s papAnu2.chr19                   47757816 892 + 51301725 ccgttgAATGTAGACGCATAGATTATATCTCTGTTCTTCATTTTACTCTGTTGTTCTATGCACTTTTCTCTATGCCAACGTCATGGTGTTTTGTTTACTACAGCTCTGTAACATATttttaagtcaggtaatgtgatattCCTGTTTTCTCTCTATATCTTAAAGTCTCCAGACAATGGGCAACACATACAAAAATCGTGGAGAAGAGGATCCCAGGACTCCCAGAGCCCAGTGTTGGATAACAGAGTGTTGGCCGTGAAGCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCtcatttcctcacctctctcctgTCTC-TATTCTAGGAAACCCTTCACGTAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTAAAGAATCCCTCTTATCTCTGCTTTTGGAAACCCGGGGAGGTGGAAGCCTTGGAGTCAAGCCTTGGCTCAGCACCTCCCAGCTCTG--ATTGTGGGCCTGTCTTCCACCATCTCTCTGAACTCCAGACACTCCAAAAGCAAAAGGGATCTTGGCCCAGCACAGGGCTCAGTGAAGTCTCTTAGTCTCTAATCTTCTGCAGCTGAGACCTCCTACAAGCTGGAAGAAAGATTGCAAATCTGACATCCTTCTCAAG-AAAAATGCAG----TGTTCTCCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCttgaaagagggaagggaagggaacatcTAATGAGGGTGAGGTGTTT-TAGAGAAGTTCCACTTGCCAGGGAATGAACTCCTGTAGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTG-AGTAACAGAGAACAGAGCTCATGCACGC-----ACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47454617 896 + 50890351 ccgttgaatgtagacgaatagattatatctgtgttcttcatttttctccgttgttctgtgcacttttctttatgccaatgtcatgctgttttgtttactacacctctgtaacatatttttaagtcaggtaatgtgatgTTGCTGTTTTCCCTCTATATCTTAAAGTCTCGAGACAATGGGTAACACATACAAAAATTATGGAGAAGAGGATCCCAGGACTCCCAGATCCCAGTGTTGGATAACAGAGTGTTGGCCGTGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCTCATTTCCTCACCTCTGTCCTGCCTC-TATTCTAGGAAACCCTTCAAGTACTTGGCCTTCACCCTCTGAACCAAGCTGCAAAACTGGTGAGTAAAGAATCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTggaagccttggattcaagccttggctcagcacctcccagctctg--actgtgagcctgtcttccaacatctctctgaactccagacactccaacagcaaaaggaatCTGAGCCCGGCACACAGCTCAGTGAAGTCTCTTAATCTCTAATCTTCTGCAGCTGAGACCTCCTACAAGCTGGAAGAATGATTGCAAATCTGACATCCTTCTCAGG-AAAAA-GCAGTGTTTGTTCTCCCTGCATTCCTTACTGGAGGATAAATTCCTGGGGGCTTGAAAGAGGGAAGGGAAGGGAACATCTAATGAGGGTGAGGTGTTT-CAGAGAATTTCCACTTGCCAAGGAATGAGCTCCTGTTGGTCATGAGGCAACCCTGGCTGACTCACCAGAGTAAGAGCCTTGCAGTAACAGAGAACAGAGCTCATGCACGC-----ACACTTTGACTCACTGACTCATTCAGCCATGGCCCCTTGCT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=66889.000000
s hg38.chr19_GL949751v2_alt         762003 77 +  1002683 CAGGCTGTGCAGTGCGGAACCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaacg
s panTro4.chr19                   59712486 77 + 63644993 CAGGCTGTGCAGTGTGGAACCTtttcctattgttgccataacaaatttccacaagattcatgggtgaaaacaaaacg
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56676512 74 + 60714840 CACACTGTGCAGTGTGGAACCTtttccta-tgttgccataacaaatttccacaagcttcgtggatggaaaccaca--
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    19875 72 -    21488 CAGGCTGTGCAGTAGGGA--CCtttcctattg-tgccataacaaa-ttccacaagattcatgggtg-aaacaaaaca
i nomLeu3.chr10_GL398297_2_random I 15604 C 0
s papAnu2.chr19                   47758708 77 + 51301725 CAGGCTGTGCAGTTAGAATCCTTAACCTGTTGTTACcataacaaatttccacaaaattGGTGGATGAAAACAAAATG
i papAnu2.chr19                   C 0 I 84
s chlSab2.chr6                    47455513 76 + 50890351 CAGGCTGTGCAGTTAGAATCCtt-ttctattgttgccataacaaatttccacaaaattggtggatgaaaacaaaaca
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=802894.000000
s hg38.chr19_GL949751v2_alt         762080 1205 +  1002683 gtttttt---aattatcttacagtgctgtagct-caaagtaggaagtg---catcttactgggctaaaatcaaggtgacagcaaggctgccttccctctgaggattccaggcacgaatctgctt-ctcacttgtcccagcttctaaaggctccca-gttccttggctcctggtccccttcctccttcctcaaagcccacaaagactggtcaca--tctcacatggcatcactcagtgccttcttcctta-ccacacttctttctctgaatgctgctctcccttcttcctcatcttttgaaaacttggggattctattgggttcaccaagatgaaaatccctcataatctcctggaaatcatccaggatacccttgttttaagttcagctgattagtaaccataattccatctgcaatcttcattcctcctttccatgtaaaataacatattcacaagctatggaggctaggacagggaca-ttttggggtgggacagcattctcctgccttccacaAACAGTGAACAAGATGCATTTGGCCTCTGCCCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGGCAGAAAATGAATGCACAAGTGGATCTATAAATGAATGATCCATTGGGAAGCATCTGTGCATGAAATCTAttt---------tttgtttgttc--------ttttgtttattgagacagagttgccctctgtcttccaggctacagtgcagtgtcacgatcttggctcactgcaacctgcttctcctggattcaagtgattctcctgcctccgcctctcgagtagctgggattacaggcaactgccaccgtgcccggctaattctttttgtatattttttgtag---agaggatgtttcaccacgttggccaagcttgtctgaaactcccaacctcaagtgatccgaccgtctcagcatgccaaagtaatgggactacaggcgtgagccactgtgcccagccAGAATTCAAAATCAATAATAGATAATGCTGAGTGTATGATTTCAGGTGACAAAGAAGGTCTCACTATTCAGATATT---TGTGACATTAATGAAAAACACGGATTGAACCCCTGAAAGATTGGCGGAAGGATTTTGCACACACAGCTGTCAGCCGTGAAGGCACAAAGGTGAAAACAATCTGATGTGGAAGGAAGAGGCTCTTCCTCAAATGCTGGGAATGAGGTGGGGAGAATGACAAGACGACTGTGGAGAGA
s panTro4.chr19                   59712563 1214 + 63644993 gtttttt---aattatcttacagtgctatagct-caaagtatgaagta---catctcactgggctaaaatcaaggtgacagcaaggctgccttccctctgaaggttgcaggcgagaatctgctt-ctcacttgtcccatcttataaagtttccca-gttccttggctcctgatccccttcctccttcctcaaaacccacaaagactgatcaca--tctcacatggcatcactcagacccttcttcctta-ccacacctctttctctgaatgctgctctcccttcttccccttcttttgaaaacttggagattctattgggttcaccaagatgaaaatccatcataatcttccggaaatcattcaggagacccttgttttaagttcagctgataagcaaccataattccatctgcaatcttcattcctcctttccatgtaaaataacatattcacaagctatgtaggctaggacagggaca-ttttggggtgggacagcattctcctgccttccacaAACAGTGAACAAGATGTGTTTGGCCTCTGCTCTTGGGACACTGATATTGCGGATGGTTAAATGGGAGGGCAGAAAATGAATGCACAAGTGGACCAATAAATGAATGATCCATTGGGAAGCATCTGTGCATGAAATCTAtttgtttgtttgtttgtttgttc--------atttgtttattgagacagagtctccctctgtcttccaggctacagtgcagtgtcacgatcttggctcactgcaacctgcacctcctggatccaagtgattctcctgcctcagcctctcgagtggctgggattacaggcaactgccaccatgcccggctaattcattttgtatattttttgtag---agaggatgtttcaccatgttggccaagcttgtctgaaactcccaacctcaagtgatccaaccgtctcagcatcccaaagtactgggattacaggcgtaagccactgtgcccagccAGAATTTAAAATCAATAATACATAATGCTgagtgtatgattttgggtgacagagaaggtctcactaatcagatatt---tgtgacattaatgaaaaacacggattgaacccctgaaatattggcggaaggattttccacacacagctgtcagccgtgaaggcacaaaggtgaaaacaatctgatgtggaagaaagaggctctgcgtgaaatgctgggaatgacgtggggagaatgacaagacgactgtggagaga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56676586 1207 + 60714840 --tttttaaaaaatatctcatggtgctgtagctccgaagtatgaaatgcatcatctcactgggctaaaatcaaggtgacagcaaggctgccttccctctgaaggttccaggcaagaatctgcttcctcacttttcccagctcctagaggctcccacattccttggctcctggtccccgtcttccttcctcaaagtccacaaaggctggtcacgtctctcacacggcatcactcagacccttcttccttgtccacacctctttctctgaatgttgctctgccttcttcctcatcttttaagtacttgggcattctatcggaaacgccaagat---aatccatcataatttccctaaaatcatctaggataccctccttttcagtttagctgattagcaaccataattccatctacaatcttcattcctccttt-aatgtaaaataacatattcacaagatgtggagactgggacatggaca-ttttggggtggagctgcattctcctcctttccacaAATGGTAAACAGGATGCATTTGGCCTCTGCTCTTAGGACCCTGATATTGCAAAGGGTTAAATGGGAGGGCAGAAAATGAATGCACAAGTGGACCAATAAATGAATGATCCATTGGGAAGCATCTGTGCATGAGATTGATTG---------ATTGGttgtt--------------ttta-tgagacagtgtctccctctgtgccccaggctggagtgcagtggcgggatctcggctcactgcagcctccacctcccaggttaaagtgattctcctcactcagcttcccgagaggctgggattacacccatgtcccaccacgcctggctaatttttttttggtattttttttagtgcagacaaggttttaccatgttgcccaggc-tatctcaaactcccaaccttaagggatccgcccgcctcagcctcccaaagtgctgagattagaggcgtgagccacggcgcTGAGCCGTATTTTAAAATAAATAATAGATAATGCTgagtgtataatttcaggtgacagagaagttctcactgatcaaatattacctgtgaccttaacgaaaaaagtagatc-aacccctggaa-attggcggaaggattttccacacacagctgtcagccgtgaaggcacaaaggtgaaagcaatcttatgttgaaggaagaggctctgcctgaaatgctgggaatggcatggggagaatgacaacacgactgtagagaga
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    19947 1211 -    21488 gttattt---aa-tatcttacagtggggtagct-caaagtatgaagtg---catctcactgggctaaaatcaaggtgacagcaaggctgccttcccactgagggttccaggcgagaatctgctt-ctcacttttcccagcttctagaagctcccacattccttggctcctggtccccttcctccttcctcaaagcccaaaaaggctggtcaca--actcacatggcatcactcagacccttcttcctta-ccacacctctttctcggaatgctgctctcccttcttccccttcttttgaaaacttggggattctattgggttcaccaagataaaaatccatcataatctcctggaaatcatccaggatacccttattttaagttcagctgattagcaaccgtaattccatctgcaatcttcattcccccttt-catgtaaaataacatattcacaagctatggagatgaggacatggacatttttggggTTGGGTGGCATTCTTC----TTCCACAAATAGTAAACAAGATGCATTTGGCCTCTGTTTTTGGGACACTGCTATTGCGGGTGGTTAAATGGGAGGACAGAAAATGTATGCACAAGTGGACCAATAAACAAATGATCCATTGAGAAGCATCTGTGCATGAAatctatttgtttatttatttgtttacttacttactaacttatttattgagacggagtag-cataaatcatacaggagcgagtgcagtggcatgatctcagttcactgcaacctccacctcataggtggaagtgatt-tcctccatcagcctctccagtagctgggattacagacaacca-cagcatgcctg--ctactctttttgcatagtttctgtag---agaggatgtttcaccatgttgtccgggctggtctcaaactcccaatctcaagtgatcaaacagcctctgcctcccaacgcactgggataagaggcatgagccacagggccgagccAAATTTTCAAATCAATAATAGATAATGTTGAGTGTATAATTTTAGGTGACAGAGAGGGTCTCACTAATCACATATT---TGTGATGTTAATGAAAAAAATGGATTCAACCCATGGAAGACTGGTGGAAGGATTTTC--CACACAACTGTCAGCCGTGAAGGCACAAAGGTGAAAACAATCTGATGTTGAAGGAAGAGGCTCTGCCTGAAATGCTGGGAATGAGATGGGGAGAATGGCAAGTTGACTGTAGAGAGA
i nomLeu3.chr10_GL398297_2_random C 0 C 0
s chlSab2.chr6                    47455589 1212 + 50890351 gcttttt---aattaccttacagtgctgtagct-caaaggatgaaatg---catctcacagagctaaaatcaaggtgacagcaaggctgccttccctctgaaggttccaggcgagaatctgctt-tctacatgtcccagtttctagaggctcccacgttccttggctcctggtccccttcctccttccacaaaacccacaaagactggtcacg--tctcacatggcatcactcagacccttcttccttgtccacacctctttctctgaatgttcctctgctttcttcctcatttcttaagggctttgggattttattgggttcaccaagat---aatctatcatcatctccctaaaatcatccaggataccctcctttccagttcagctgattagtaaccgtaattccatctgcaatcttcgttcttcctctccacgtaaaatcacatattcacaaggtgtgaaggctaggacagggaca-ttttgggggtggggtggattctcctgccttccacaAATAGTAAACAGGATGCATTTGGCCTGTGCTCTTGGGACACTGACGTTGCAGATGGGTAAACGGGAGGAAAGAAAATGAATGCACAAGTGGACCTATAAATGGTTGATCCACTGGGAAACATCGGTGCATGAAattgatttatttatgtatgtattaatt---------ATGTAtttattaagatggagtctcgctctatcccctaggctgcagtgcagtgtcacgatcttggctcactgtaacctccgcctcctgggttcaagtgattcttctgcctcagcctctcaagcagcttgga-tacaggcacccgccaccacacctggctaattctttttgtagattgttgttag---agaccatgtttcaccatgtggcccagtc-tatctccaactccctatctaaagtaatccgaccgcctcagcctcccaaagtgctcggattataggcgtgaaccccggcacccagccAGAATTTAAAATAAATAACAGATAATACTGAGTGTATGATTTCAGGTCACAGAGAAGTTCTCACTGATCAAATAATACTTGTGATCTTAATGAAAAAAATAGATC-AACCCCTGGAAGACTGGCGGAAGGATTTTCCACACACAGCAGTCAGCTGTGAAGGCACAAAGGTGACAACAATCTTATGTGGAAGGAAGAGGCTCTGCCTGAAACACTGGGAATGAGATGGGGAGAATTACAAGACCACTGGAGAGAGA
i chlSab2.chr6                    C 0 I 6918
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47758785   84 + 51301725 I
e macFas5.chr19                   55637200  126 + 59248254 T
e rheMac3.chr19                   60526244    0 + 64156825 C

a score=207.000000
s hg38.chr19_GL949751v2_alt         763285 1 +  1002683 C
s panTro4.chr19                   59713777 1 + 63644993 c
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56677793 1 + 60714840 c
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    21158 1 -    21488 T
i nomLeu3.chr10_GL398297_2_random C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e chlSab2.chr6                    47456801 6918 + 50890351 I
e papAnu2.chr19                   47758785 84 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=225368.000000
s hg38.chr19_GL949751v2_alt         763286 300 +  1002683 GGAGAGCACACTGGGTACACAGGAAACTAAGGAGCAACAAGGAGTGTGTGTTTGACACTCACAGCCATTGGATTCACCTCGGGG-TAACCAGGAATCCCTACATGATTAATA-TGACTGACATGAAAATAAAGGAGGCCCAGGGGCGTAACTGGAATCTAGGAGACCGTGGAAAAGGCAATTCCCGACCCACTGGTGAAATGTGGTGCTGATTTTGACACTAAGTGGATGAAGCAGATGGATATAAGCTATGCTTGTGAGGTAGAATCATTGGCTGGAAAGGCTTGCTGGGTTTGA-TTTTCC-
s panTro4.chr19                   59713778 301 + 63644993 ggagagcACACTGGGTACACAGGAAACTAAGGAGGAACAAGGGGTGTGTGTTTGACACTCACAGCCATTGGATTCACCTCGGGT-TAACCAGGAATCCGTACATGATTAATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGTGTAACTGGAATCTAGGAGACTGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGATTTTGACACTAAGTGGATGAAGCAGATGGATATAAGATATGCTTGTGAGGTAGAATCATTGGCTGGAAAGGCTTGCTGGGTTTGA-TTTTCC-
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56677794 300 + 60714840 ggagagcACACTGGGTACACAGGAAACTAAGGAGGAATAAGGGGTGTGTGTTTTATACTCACAGCCATTGGACTCACCTCGGGG-TAACTAGGAATCCCTACATGATTAATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGCATAACTGGAATCTAGGAGACCGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGATTTAGACACTAAATGAATGAA--AGATGGACACAAGATGTGTTTGTGAGGTAGAGTAATTCGCAAGGAGGGCTTACCTGGTTTGATTTTTCC-
i ponAbe2.chr19                   C 0 C 0
s nomLeu3.chr10_GL398297_2_random    21159 298 -    21488 GGAGAGCACACTGGGTACATAGGAAACTAAGGAGGAACAAGGAGTGTGTGTTTTATACT--CAGCCGTTGGACACACCTCGGGGCTAACTGGGAATCCCTACATGATTAATAGTGACTGACATGAAAATCAGGGAGGCCCAGGTGCGTAACTGGAATTTAGGAGACCGTGGAAAAGGCAATTCCTGCCCCACTGGTGAAATGTGGTGCTGATTTAGACATTAAATGAATGAA--AGATGGACACAAGATGTGTTTGTGAGATAGAGTAATTTGCAGGGAGGGCTTGTCTAGTTTGA-TTTTTC-
i nomLeu3.chr10_GL398297_2_random C 0 n 0
s chlSab2.chr6                    47463719 301 + 50890351 GAAGAGCACACTGGGCACACAGGAAACTAAGGAGG-ACAAGGAGTGTGTGTTTTATACTCACAGCCCTTGGATTCACCTCGGGC-TAACTAGGAATCCCTACGTGATTTATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGCGTAACTGGAATCTAGGAGACTGTGGAAAAGGCAATTCCCACCTCACTGGTGAAATATGTTGCGTATTTAAACACTAAATGAATGAAGTGGATGGATACAAGATGTGTATGTGAGGTAGAATAATTCACAGGGAGGGCTTGCCTGGTTTGA-TTTTTCC
i chlSab2.chr6                    I 6918 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e papAnu2.chr19                   47758785  84 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=773244.000000
s hg38.chr19_GL949751v2_alt         763586 1840 +  1002683 TACTTGTTTAATCCTCGCTTAATTAATTTCTTTCTGAGATTTATTCATCCTACACATAAATCAATACCTGGCAAAGGAGTGACAGATATATGAGGGGTGGTGGAAATGAAGAGACCTATTATAGCGTAATATACAAGTCTGTGAAcggtggctcacgcttgtaacccagcactgcaggaggccaaggcgggtggattccatgaagtcaggagttccagaccagcctggccaacatggtgaaaccctatctgtactaaaaatacaaaaattagccgagcatggtggtgcatccctgtaatcccagctcctactctggaggatgaagcaggagaatgacttcaacccaggaggtggaggttgcagtgagtggagattgcatcactgcactccagcctgggtgacacaaggagactccgtctcaaaaaataaaaataagaaaTGCATAAATATAATAAAACACACACGAATGACAAAGGCACCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCAATGAGCCTAAAACCTCTTCCCTATTTGGCTTTCTGTGAGCATGAGATCACATAGAAAATGTGAAAGCCCGCTGAATCCTCCAGCACGGATCCTGGAATAGAGAAAGTGCTCTGTTCATCGCAAAAAAAAACTTGCCCACTCACCCAAATCCCCCACCTCACCCCTACTTCCAATCACCTGTGGAGATTCAGATAGACCATGGGGAGG-AAACATTAATACTCCTTGGAGTGAGTCCAGATCTTGGAATCAGAGATCAGCGACAGCACTAGCTCCTGTTCCCCTTTCCTACTAATTCACAGGAGGACAGGTGGTATTGAAGCAATAGATGGTGGAGGGGGTGGTCCTT-CCCCCAGCCTCTCGGGTAGAACAGCAGCCTAACATGTGTCTCCCGAGATCACAAAGAGCAGCACATTTCACACGGGCTTCAACACTATTTTCTGGCTGTTTGACATAAGAGAATCTTGCTTCGCTATTTTTAATCGTGATTTCACCTTTGTTTCCTTTCCTTGGTGAATGCAATTTGTTTGACTCAAGAATGCTGTGGATGTAGAAATCCTAAAGCACATTCGCTGTGTATCAATCCCAGTGCAGTCTTCCCAGAGAAGACTCTAAACAAATCCTGGactgcacctgggcctatgccaattcctatcactcaccgtcactccagggagacagaacacacagagaatacgttacat-aggcaggttcattactaacagataagcagtgagtgacaacagaagcctgcatttcaatgtgagccagtccctcaaggctcagaaaagctgctcgggacatatggagtcaccccatttgcagtgtaactgggggaagccagaaagcagcccagcctgggttttgtaccctggagccacaggaagcactcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacagcccaggctgttctgagacattcctcctgatctcaggatgttgctatcttagtccatttttgttgctctaaaggaacacttgagcctgggtaacttctaaagaaaagagattggtttgcctcacagttctgcaggctgtactggaagcatggcaccagaatctatttctcgtgatggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgcagagaccgcagagatcacacggcaagagagagagtaagggggagagggagcgatggagcttccaagctctttttaacaaccagctctccagga-actaacagagggggaacttgctaaccccgtctcct
s panTro4.chr19                   59714079 1838 + 63644993 TACTTGTTCAATCCTCGCTTAATTAAATTCTTTCTGAGATTTATGCATCCTACACATAAACCAATAACTGGCAAAGGAGTGACAGATATATGAGGGGTGGTGGAAATGAAGGGACCTATTATAGCATAATATACAAGTCTGTGAAcggtggctcacacctgtaacccagcactgcaggaggccaaggcaggtggatcacatgaagtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctaggaaaaatacaaaaattagccgagcatgctggtgcatccctgtaatcccagctcctattctgcaggatgaagcaggagaatgacttcaatccaggaggtggaggttgcagtgagtggagattgcatcactgcactccagcctgggtgacacaaggagactccatctcaaaaaataaaaataagaaaTGCATAAATATAATAAAACACACACGAATGACAAAGGCACCTGAATTTCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGGCAATCAGCGTAAAACCTCTTCCCTATTTGGCTTTCTGTGAGCATGAGATCATATAGAAAATGTGAAAGCCCGCTGAATCCTCCAGCACAGATCGTGGAATAGAGAAAGTGCTCTGATCATCGCAAAAAAGA-CTTACCCTGTCACCCAAATCCCCCACCTCACCCCTACTTCCAATCACCTGTGGAGATTCAGATAGGCCATGGGGAGGTAAACATTAATGCTCCTTGGAGTGAGTCCAGATCTTGGAATCAGAGATCAGCGCCAGCACTAGCTCCTGCTCCCCTTTCCTACTAATTCACAGGAGGACAGGTGGTATTGAAGCAATAGATGGCCGAGGGGGTGGTCTTT-TCCCCAGCCTATCGGGTAGAACAGCAGCCTAACATGTGTCTCCCGAGATCACAAAGAGTAGCACGTTTCACACGGGCTTCAACACTATTTCCTGGCTGTTTGACATAAGAGAATTCTACTTCGCTTTTTTTA-TCTTGCTTTCACTTTTGTTTCCTTTTCTTGGAGAATGCAAGTTGTTTGACTCAAGAAAGCTGTGGATGTAGAAATCCTAAAGCACATTCGCTGTGTATCAATCCCAGTGCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGGACTGCACCTGGGTCTATGCCAATTCCTGTCACTCACCGTCACtccagggagacagaacacacagagaatacgttatat-aggcaggttcattactaacagataagcagcgagtgacagcagcagcctacatttcaatgtgagccagtccctcaaggctcagaaaagctgctcgggacatatggagtcaccccatttgcagtgtagctgggggaggccagaaagcagcccagcctgggttttgtaccctggagccacaggaagccctcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacagcccagcctgttctgagacgttcctcctgatctcaggacgttgctgtcttagtccatttttgttgttctaaaggaacacttgagcctgggtaacttctaaagaaaagagattggtttgcctcaccgttctgcaggctgtactggaagcatggcaccagcatctatttcttgtgacggcctcaggctgctccccctctggcagaagggaaggagggtctgtctgtgcagagaccacagagatcacacagcaagagagggagcaagggg-agggggagcaatggagcttccaagctcttttgaacaaccagctctccagga-actaatagagggggaacttgctaaccccgtctcct
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56678094 1815 + 60714840 TAACTGTTTAATCTTCACTTCATTCATTTCTTTCTGAGATTTATTTTTCCTACGTGTAAATCAATACTTGGCAGAGGAGTGATAGATACATGAGGGGTGGTGTGAAGGAAGAGACCTATTATAATATAACACACAAGGTTCTGAAcggtggctcacacctgtaacccaacattttgggaggctaaggcggctggatcaagtgaggtcaggagttcgagatcagcctggacaacatggtgaaatcccatctctactaaatatacaaaaactagctgggcgaggtggcgcatgcctgtaataccag---ctattcgggaagctgaagcaggagaatggcttcaaccagggagggagaggtttcagtgagccaagatcacgtcattggactgcaccctaggtgacagagtgagactccatctcaaaaaataaaaataaaaaaTACATAAATATAATATAACATACACGAATGACAAAGGCACACCAATTCCAATCATCATCTTTCTATTTCTCTATAATGACTTCTTTGATCCTTTATCTTATTCATAAGAAAATCAGGTGAAAACATCTTCCCTATTTGGTTTTCTATGACCATGAGATCATACGGAAAATGTGA----------AACCCACCAGCACAGGTCCTGGAATAGAGAACATGATCTGTTCATGGCATAAAA---CTTGCCCCTTCACCCAAATCCCCCACCTCACCCCTACTTCCAATCATATTAAGTGACACAGATAGATCATGGGGAGGTAAAAACTAATATTCTTTG----GAGTTCAGATCTTAGACTCAGAGACCAGTGCCAGCACTATCTCCTGGTCACCTTTTGGACTAATTCACAGAAAGACAGGCTGTATTGAAGCAACAGATGAGGGAGGGGGTGGTCCTT-CCCCGGGACTCTCGGGTGGAACAGCAGCCTAATATCTGACTCCCAAGATCACAAA-AGTAGCACATTGCCCACGAGCTTCATCATCGTTTCCTGGCTGTTTGATATAAGACAGTTCAACCTCACTTCTGTTGATTTCAACGTCACTGTTTTTGCCTTTACGTGGAGAATGTAATTTGTTTGAGTCAAGAGGGTTGTGGATGTAGAAACTGTAAAGCACATTCGCTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTaaacaccccaggtactgcacctggggctgtaccaatttctatcactcaccgtcactccagggagacagaacacacagagaatacattacat-aggcaggttcattacttatagataagcagcaagtgacaacagaaaccttcccttcagggtgagccagtccgccaaggctcagaaaaactgctcaggacacatggagtcacctcatgtgcactgtagctgggggaacccagaaagcagcccagcctgggtgttgtaccctggagccacaggaagcactcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacatgccaggctgttctgggacattcctcctgatctcaggatgttgctgtcttagtccatttttgttgctataaaagaacacttgagcctgggtatcttctaaagaaaagagatgtgtttggctcactgatctgcaggctgtactagaagcaggacaccagcatctatttttggctgcggcctcaggctgctcccactctgacagaagacaaggggggcctgcgtgtgcagagaacacggagatcacatggcaagagagggagaaagggg------gtgtaatggagcttccaagctctttttaagaatcaactctccagggcactaatagagggagaacttgctaaccccgtcctct
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47464020 1819 + 50890351 TAATTGTTCAATCTTCACTTCATTAATTTCTTTCTGAGATTTATTTTTCCTACATGTAAATCAATACCTGGCAGAGGACTGATTGATACATGAGGCGTGGTGCAAAGGAAGAGACTTATTATAATATAACACGCAAGGTTGTGAAcggtggctcacacctgtaacccaacattttgggaggctgaggcggatggatccattgaggtcaggagttcaagaatagcctggacactatgctcaaacccaag-tctactaaataaacaaaaactagctgggtgtggtggcgcatgcctgtaataccag---ctattcgggaggctgaagcaggagaatggcttccacccgcgaggcagaggtttcagtgagccgagatcgc-tcattggactacaccctgggtgacagagtgagactctatctcaaaaaataaaaatacaaaaCACATAAATCTAATATAGCATACAGGAATGACAAAGGCACTTCAATCCCAATTATCATTTTTCTGTTTCTCTATAACGACTTCTTTGATCCTTTATCTTATTCATTAGAAAATCAGCCAAAAACGTCTTCCCTATTT-GCTTTCTGTGAGCCTGAGATCATATGGGAAATATGAAAGGCCCCTGAACCCACCAGCACAGGCCCTGGAATAGAGAAAGTTCTCTGTTCATGGCATAAAA---CTTGCCCCCTCAGCCAAATCCCCCACCTCACGCCTACTTCCTATCACATTAAGAGACACAGATAGACCGTGGGAAGATAAAAACTAACATTCTTTG----GAGGTCAGACCTTGGACTCAGAGACCAGTGCCAGCACCATCTCCTGGTCACCTTTTGTACGAATTCACAGAAGGACAGGTTGTACCGAAGCAATAGATGATGGAGGGGGTTGTCCTTGCCCCCGGACTCTCAGGTAGAACAGCAGCCTAATATATGACTCCCGAGATCACAAA-AGTAGCACGTTCTTCACAAGCTTCATCATTATTTCCTGGCTGTTTGATATATGACAGTTCTACTTCACTGTTTTGA-TCTTGATTTCACGTT--ATTCCTTTTCTTGCTGAATGTAATGCGTTTGAGTCAAGTGGGTTGTGGCTGTAGAAATTGTAAGGCACATTCACTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGTactgcacctggggctatgccagcttctatccctcaccgtcactccagggagacagaacacacagagaatacatcacgtaaggtgggttcgttactaacagataaccagtaagtgacaacagaagcctgcatttcagtgtgagccagtcccccaaggctcagaaaagctgctcgggacatatggagtcactccatttgcactgcagctgagggaacccagaaagcagcccagcctgggttttgtaccctggagccacaggaagcactgagctaaagcactgcatgacgtcctcctctgggacgaacaggaagacagcccag-ctgttctgggactttcctcctgatctcaggatgttgctgtcttagtccatttttgtggctgtaaaagaacacttgagcctgggtaacttctacagaaaagagaattggtcgactcacggttctgcaagctgtactagaggcaggacatcagcatctatttctggctgcggcctcaggctgctcctactctggtagaagagaagg-gggcctacatgtgcagagaccaccgagatcacacggcaagacagggagaaacggg------gtgtgatggagcttccaagctctttttaagaaccaactctccagagtactaatagagggagaacgtgctaaccctgtcgtgt
i chlSab2.chr6                    C 0 T 21560
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457    0 -    21488 I
e papAnu2.chr19                   47758785   84 + 51301725 I
e macFas5.chr19                   55637200  126 + 59248254 T
e rheMac3.chr19                   60526244    0 + 64156825 C

a score=25395.000000
s hg38.chr19_GL949751v2_alt         765426 52 +  1002683 tgggacagcattggtctgttcatgatggatccacctccatgacccaaacacc
s panTro4.chr19                   59715917 52 + 63644993 tgggacagcattgatctgttcatgatggatccacctccatgacccaaacacc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56679909 52 + 60714840 ggggacagcattaatctattcatgatggatccaccccgctgaccaaaacacc
i ponAbe2.chr19                   C 0 I 1922
s chlSab2.chr6                    47444279 52 + 50890351 ggggacagcattgatctattcatgatggatccacctccatgacccaaacacc
i chlSab2.chr6                    T 21560 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e papAnu2.chr19                   47758785 84 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=461.000000
s hg38.chr19_GL949751v2_alt         765478 4 +  1002683 tctg
s panTro4.chr19                   59715969 4 + 63644993 tccc
i panTro4.chr19                   C 0 C 0
s chlSab2.chr6                    47444331 4 + 50890351 tccc
i chlSab2.chr6                    C 0 C 0
e ponAbe2.chr19                   56679961 1922 + 60714840 I
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e papAnu2.chr19                   47758785 84 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=52419.000000
s hg38.chr19_GL949751v2_alt         765482 124 +  1002683 aagaggcccaacctcccacaatgggggtgaaatttcaatgtgaggtttgaaagggtcaaacatctcaactaaagtagttgtatcctcagcacgttctatggttactatgagagctataattgag
s panTro4.chr19                   59715973 124 + 63644993 aagaggcccaacctcccaccctgggggtgaaatttcaatgtgaggtttgaaggggtcaaacatctcaactaaagtagttgtatcctcagcacattctatggttactatgagagctgtaactgag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56681883 124 + 60714840 aataggcacaacctcacacactggggattaaatttcaaagtggagtttggaggggtcaaacattgaaactgtaacagttgtatcatcagcacattctattgttgttatgaaaactataactgag
i ponAbe2.chr19                   I 1922 C 0
s chlSab2.chr6                    47444335 124 + 50890351 aagaggcccaacctcccacactgggggttaaatttcaatgtgaggtttcaaggggtcaaacatctaaactaaagcagttgtatattcagcacgttccatggtgaccgtgagagctgtaaccgag
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47758785  84 + 51301725 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=1097.000000
s hg38.chr19_GL949751v2_alt         765606 2 +  1002683 aa
s panTro4.chr19                   59716097 2 + 63644993 aa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56682007 2 + 60714840 aa
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47758869 2 + 51301725 AG
i papAnu2.chr19                   I 84 C 0
s chlSab2.chr6                    47444459 2 + 50890351 ag
i chlSab2.chr6                    C 0 I 32610
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=761589.000000
s hg38.chr19_GL949751v2_alt         765608 993 +  1002683 agcaggggaaagctaggtcTCCCGCCATTTGGGTGCTTGTCCTAAAGAGACGTTGTATGTGGTTACCTGCCAATCAAGAAATGCGAGACAATTCATAAAGAGGAACTGCTATGATTAGCTTCTTATTGGTGTCTCCTCTTCTTCCAGGTAACCCCAGACACCTACATGTTCTGATTGGGACCTCAGTGGTCAAAATCCCTTTCACCATCCTCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCGACAAAAAAAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCACGCGGATGTGTGTTCCTCACCAGCAGGATGGTCCCTGGCCCAAGACAGGAGCCACAGAGGCAGGACTTTCTAGAGAGAGCACCAGATTCCCTTCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCACGTCCCCTGCAGCCACTCACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGATAGAATCAATGGGATGGGACCTCAGAGCTATTCATGGGATGGGTCCTTGAACTCAGAGAGATAGAATGTCTGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGCACCTATGGCCTCCCCCTGTTTGTTGGTATCTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCGAGCTCTTTTGTTGACTTCCGTCTTCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCAGGGAACAGAACAGTGAACAGCGAGGTAGGTGCTCCTCGGCCCAGCCTCGTGGCT--AGTCTTATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGATTCTGATGAACAAGACCATCAGGAGGTGTCATACGCATAATTGGATCACTGTGTTTTCACACAGAGAAAAATCACTCGCCCTTCTGAGAGGCCCAAGACACCCCCAACAGATACCAGCATGTACAT
s panTro4.chr19                   59716099 993 + 63644993 agcaggagaaagctgggtctcccaccatctggatgcttgtcctAAAGACATGTTGTATGTGGTTACCTGTCAATCAAGAAATGCAACACAATTCATAAATAGGAACTGCCATGATTAGCTTCTTATTGGTGTCTCCTCTTCTTCCAGGTAACTCCAGACACCTGCACGTTCTGATTGGGACCTCAGCGGTCATCAtcctcctcatcctcctcctcttctttctcctTCATCGCTGGTGCTCCAAAAAAAAAAGTAAGTCTCACAAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAAACAGGATGGGAACACTCAGGTGTGTGTTCCTCACTGGCAGGATGGTCCCTGGCCCAAGGCAGCAGCCACAGAGGCAGGACTTTCTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCATGTCCCCTGTAGCCACTCACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGGATGGGTCCTTGAGCTCACAGAGATAGAATGTCTGAGTCT-GCTGTTGGCAACTGAGGGACCTCAGGCACCTATGGCCTCCCCCTGTATGTTGGTATCTGCTTATGAAATGAGGACCCAGAAGTGCCCTCCAAGCTGTTTTGTTGACTTCTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCAGGGAACAGAATAGTGAAGAGGGAGGTAGGTGCTCCTTGGCCCAGCCTCGTGGCT--AGTCTTATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCTGTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATATGCACACTTGGATCACTGCGTTTTCACACAGAGAAAAATCAATCCCCCTTCTCGGAGGCCCAAGACACCCCCAACAGATACCATCGTGTACAC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56682009 994 + 60714840 agcaggagaaagctgggtcTCCCACCAAGTGGGTGCTTGTCCTAAAGAGGTGTTTTATGTGGTTGCCTGGCAACCAAGAAATGACAGACAATCCACAAAGAGGAACTGCTATGGTTAGCTTCTTATTGGATTCCCATCTTCCTCCAGGTATCGCCAGGCACCTGCATGCTGTGATTAGGTACTCAGTGGCCATCATCCTCTTCACCACCCTCCTCTTCTTTCTCCTTCGTCGCTGGTGCTCCAAAAAAAAAAGTAAGCCTCGTGAAGCAGAGGCCAGAGAACTCAGGGCCCTGTGGGGAAGCAGGATGAGAGCACGCAGGTGTGTGTTCCTCACTGGCAGGATGGTCCCTGTCCCAAGGCAGGAGC--CAGAGGCAGAGCTTTCTAGAGAGAGCACCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTAATTGTGAACTGTATCCTCACGTCCCCTGCAGCCACTCACATCCAAGAGAAGGTTCCATGACAGGCAGAAAATGGGAGATAGAATCAATGGGATGGGAACTCAGAGCTATTCATGGAATGGGGTCTTGCACTCAGAGAGATGGAATCTCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCAGGCACCTATGGCCTCCCCCTGTGTGTTGGTATCTGTTCATGAAATGGGGACCCAGAAGTGCCCTCCCAGCTGTTTCGATGACTTCTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACGGTGAACACGGAGGTAGGTCCTCCTCGGCCCAGCCTCATGGATACAGTCTTATTCCCAAAGAGTCCTGAAAAATGTGAGCACCCTCCCTCATTCAACATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATATGCACAGTTGGATCAGTGCATTTTCACACAGAGAAAAATCACTGGCCCTTCTCAGAGAACCAAGAGACCCCCAACAGATACCAGTGTGTACAT
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47758871 989 + 51301725 AGCAGGAGAAAGCTGGGTCTCCCGCCATCAGGCCGCTTGT-CTAAGGAGACATTCCACATGGTTACCTGTCAATCAAGAAACGAGAGACAATCCATAAGAAGGAACTGCTATGATTAGCTTCTTATTCGTGTCTCTTCTTCCTCCAGGTATCCCCGGACACCTGCATGTTCTGATTGGGACCTCAGTGGTCATGATCCCCTTCAcca---tcttcttctttctcctgcatCGCTGGTGCTCCAACAAAAAGAGTAAGTCTTACGAAGCAGAGGCCACAGACCTCAGGGCTGAGTGGGGAAGCGGGATGGGAGCACACAGGTGTGTGTTCCTCACCGGCAGGATGGTCTCTGGCCCAAGGCaggagccacagaggcagagctttcTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTATATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGAAATTGAGAGCCATTCATGGGAAAGAGTCTTGAACTCAGAGAGATAGACTGTCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCAGGCACCTACAGTCTCCCCCTGTGCGTTGGGCTCTGCACATGAAATGAGGACCCAGACGTGCCCTCCCAGCTGTTTTGATGACTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCTGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTCGGCCCAGACTCGTAGATACTGCTTTATTCCCTAATAGTCCTGAAGAATGTGAGC-CCCTCCCTCACTCAACA-TTCCCTCTCTCCAGGACTCTGAAGAAGAAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTCTCACACAGGGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCGTGTACAT
i papAnu2.chr19                   C 0 I 338
s chlSab2.chr6                    47477071 989 + 50890351 AGCAGGAGAAAGCTGGGTCTCCCGCCATCAGGCCGCTTGTCCTAAGGAGACATT-CACATGGTTACCTGTCAATCAAGAATTGAGAGACAATCCATGAAAAGGAACTGCTATGATTAGCTTCTTATTGGAGTCTCTTCTTCATCCAGGTAACCCCAGACACCTGCATGTTGTGATTGGGACCTCAGTGGTCATGATCCTCTTCACCA---TCTTCTTCTTTCTCCTGCATCGCTGGTGCTCCCACAAAAAGAGTAAGTCTCACGAAGCAAAGGCCACAGACCTCAGGGTCGTGTGGGGAAGCGGGATGGGAGCACGCAGGTGTGTGTTCCTCACCGGCAGGATGGTCTCTGGCCCAAGGCAGGAGCCACAGATGCAGGGCTTTCTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTAGGAAGCAGAATCACTGGGATGCCAATTGAGAGCCATTTATGGGAAGGGGTCTTGAACTCAGAGAGACAGAATGTCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCAGGCACCTACGGCCT-CCCCTGTGTGTTGGACTCTGCACATGAAATGAGGACCCAGACGTGCCCTCCCAGCTCCTTTGATGACTTTTGTCTCCTCCAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTTGGCCCAACCTCGTGGATACTGCTTTATTCCCTAATAGTCCTGAAGAATGTGAGC-CCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACTCTGATGAACCAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTCTCACACAGGGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAGCGTGTACAC
i chlSab2.chr6                    I 32610 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=418874.000000
s hg38.chr19_GL949751v2_alt         766601 550 +  1002683 AGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTTCTGTCCACGAGCACCACAGTCAGGCCTTGAGGGGATCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCacttgacccctgcccacctctccaacctaactggcttacttcctagtctacct-gaggctgcaatcacactgaggaactcacaattccaaacatacaagaggctgcctcttaacacagcacttagacacg--------------------tgctgttccacctcccttcagactatctttcagccttctgccagcagtaaaacttataaatttttt-aaataatttcaatgtagttttcccgccttcaaataaacatgtctgccctcatggtttcggtaac
s panTro4.chr19                   59717092 571 + 63644993 GGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCATGAGCACCACAGTCAGGCCTTGATGGGATCTTCTGGGGAGACAACAGCCCTGTCTCTAAACTGGGTTGCCAGCTCCCATGTACTAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTCAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCTACCGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCacttgacccctgcccacctctccaacctaactggcttacctcctagtctacct-aaggctgtgatcacactgaggaactcacaattccaaacatacaagaggctccctcttaacacggcacttaggcacgtgctgttccaccttccctcatgctgttccacctcccctcAGACTATCTTTCAGCCTTCTGTCAGCAGTAAAACTTATACATTTTTTAAAATAATTTCAATGTAGTTTTCCCTCCTTCAAATAAACATGTCTGCCCTCATGGTTTCGGTAAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56683003 559 + 60714840 AGAACTTCCAAATGCTGAGCCCAGAGC----GTTGTCTCCTTCCCACAAGCACCACAGACAGGCCTTGATGGGATCTTCTAGAGAGACAATAGCCCTGTCTCAAAATCAGCTTGCCAGCTCCCATGTACCAGCAGCTGGAATCCGAAGGCGTCAGTCTGCATCTTAGAGCATCGTTCTTCCTCACACCACAAATCTG---GTGTCTCTCTCTTGCTTACTAATGTCTATGGTTCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCGTAGCCCACAATTGTCCATTTCACTTCAcccctggccacctctccagcctaactggcttacttcctagtcctact-gaggaagttcctacactgaggaactcacaattccaaacatacaagaggctccctcttaacacggcacttagacacgtgctgttccaccttacttgatgctgttccacctttcctcaggctatttttcagccttctggcatcagc-AACCTTATAAAATTTTT-TTATGATTTCAATGTAGTTCTCTCCTCTTCAAATAAACGTGTCTGCCCTCATTCTTTAGGT---
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47760198 569 + 51301725 GGAGCTTCCAAATGCTGAGCCCAGATCGAAAGTTGTCTTCTATCCATGAGCACCACAGTCAGGCCTTGAAGGGGTCTTCTAGGGAGACAACAGTCCTGTCTCAAAACCGGCTTCACAGCTCCAATGTACCAGCAGCTGGAATCTGAAGGTGTGAGTCTGCATCTTAGGACATCGCTCTTCCTCACAGCACGAATCTGAACGTGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGCAGGGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCACTTGacccctgcccacctctccaaCCT-ACTGGCTTACTTCCTAGTCCTACTGGAGGCTGCAGTCACACTGAGGAACTCACAATTCCAAACATACAAGAGGCTCCCTCTTAACACGGCACTTAGACACATGCTGTTCCACCTTCCCTCATGCTGTTCCACCTCCCCTCAGATTATCTTTCAGCCTTCTGTCAGCAGTGaaacttataaatttttt--tatcatttcaatgtAGCTCTCTCCTCTTCAAATAAACACCTCTGCCCTCATCTTTTAGGTAAT
i papAnu2.chr19                   I 338 C 0
s chlSab2.chr6                    47478060 568 + 50890351 GGAACTTCCAAATGCAGAATCCAGATCGAAAGTTGTCTTCTATCCATGAGCACCACCATCAGGCCTTGCAGGGGTCTTCTATGGAGACAACAGCCCTGTCTCAAAACCGGCTTGACAGCTCCAATGTACCAGCAGCAGGAATCCGAAGGTGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACGTGCCTCTCTCTTGCTTACAAATGTCTAACGTCCCCACTGCCTGCTGCAGAGAAAACCCACTCCTTTGCTTAGCCCACAATTCTCCActtcacttgacccctgcccacctctccaacct-actggcttacttcctagtcctgctggaggctgcagtcacactgaggaactcagaattccaaacatacaagaggctccctcttaacagagcacttagacacgtgctgttccaccttccctcatgttgttccacctcccctcAGACTATCTTTCAGCCCT-TGTCAGCAGTGAAACTTATAAATTTTTT--TATCATTTCAACGTAGCTCTCTCCTCTTCAAATAAACACATCTGCCCTCATCCTTTAGGTAAT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55637200 126 + 59248254 T
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=618237.000000
s hg38.chr19_GL949751v2_alt         767151 540 +  1002683 gagactcttttcttgcctaaggcttccggtgttatcattaccatgtccacataaccccatctgttctccattgggttctcagccctggactctgagcttctggaagcagaatggagcctgatttgtctctgAGACTCCAATTTCCATCCAAAGATACAGCACATAGGAGGCTCCAAGGATCGTGAATCACATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCACGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGCCTCATCTCCACGGGGACACATATCAACATATCATCTTTCATAATATAAATATAcagtcggtcctccatatctgtggggtttacaggtgtttattgaaccaacaataaatcaaaaatgttttcagaaaaaaatccccgaagtttcaagaagcaaaaaactatgttgaatcgacacaaattgagtggcgtgtaggctgtgtcaggaattataagtaatcaagagatgatttcatgtatacaggaggatgtgcatgggtt
s panTro4.chr19                   59717663 540 + 63644993 GGGACTCTTTTCTTGCCTAAGGCTCCCGGTGTTATCAGTACTATGTCCACGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAGGGTGGAGCCTGATTGGTCTCTGAGACTCCAATTTCCATCCAAAGATGCAGCACACAGGAGGTTCCAAGGATCGTGAATCAGATGAACAAGTCATATTCTTACTCCCTGCAGACCTGCAAAGCTGGCAGAGTCATTCCATGATGAAACATTTGTAGAGTCATAAGCCCTGTTAGTCTCATCTCCACAGGGACACACATCAACACATCATCTTTCATAATATAAATATAcagtcactcctccatatctgtggggtttacagctgtttattgaaccaacaataaatcaaaaatattttgaggaaaaaatccccgaattttcaaaaagcaaaaaactatgttgaatcgacacaaattgagtggcgtgtaggctgtgtcaggaattataagtaatcaagagatgatttcatgtatacaggaggatgtgcatgggtt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56683562 532 + 60714840 --GACTCTTTTATTGCCGAAAGTTTCCGGTGTTATCATTACTATGTTCATATAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAGGGTGGAGCCTCATTTGTCTCTGAGACTCCAATTTCCTTCCAAAGATGCAGCACATAGGAGGTTCCAAGGATCGTGAATCACATGAACAAGTGATATTCTTACTCTCTGCAGACCTGCAGAGCCGGCAGAGTCATTCCACGATGAAACATTTGCAGAGTCATAGGTCTTGTTAGTCTCATCTCCACGGGGACACATATCAACACATCATCTTTCACACTATAAATATAcagtcgctcctccatatctgtggggtttacaggtgtttatggaaccaaatataaatcaaaaatattcagag-aaaaaatccacaaagtttcaaaaagc--aaaactatgttgaatggacacaaataaagctgtgtgtgggctgtatcagga---ataagtaatcaagagatgatttcatgtatacaggaggatgtgcatgggtt
i ponAbe2.chr19                   C 0 T 94031
s macFas5.chr19                   55637074 533 + 59248254 GTGACTCTTTTCTTGCCGAAAGTTTCCGGTGTTATCATTACTATGTCCATGTAACCCCATCTGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAG-GTGGAGCCTGATTTGTCTCTGGGACTCCAATTTCCGTCCAAAGATGCAGCTCATGGGAGGATCCAGGGATCGTGAATCAGATGAACAAGTGATATTCTTACCCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACATGTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGacacatgtcaacacatcatctttcataccataaatacacagtcgctcctctagatctgtggggtttacaggtgtttattaaaccaactataaatcaaaaatattcagag-aaaatat--acaaagtttc-aaaagc--aaaactatgttgaatggacacaaatggagtggtatgtatgctttgtcaggaattataaataatctagagatgatttcatgtatacatgagggtgtgcatgggtt
i macFas5.chr19                   T 126 C 0
s papAnu2.chr19                   47760767 535 + 51301725 GTGACTCTTTATTCGCTGAAAGTTTCTGGTGTTATCATTACCATGTCCATGTAGCCCCATATGTTCTCCGCTGGGTTCTCACCCCTGGACTCTGAGCTTCTGTAGGCAA-GTGGAGCCTGATTTCTGTCTGGAACTCCAATTTCCATCCAACGATGCAGCGCATAGGAGGTTGCAAGGATCGTGAATCAGATGAACGAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACACCTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATGTCCACACATCATC-TTCATACTATAAATACACAGTCGCTCCTCCAGATCTGTGGGGTTTACAGGTGTTTGTTGAGCCAACtataaatcaaaaatattcagag-aaaaaatccacaaaatttcaaaaagc--aaaactatgttGAATGGACACAAATGCAATGGTGTGTAGGCTGTGTCAggaattataagtaatctagagatgatttcatGTATACAGGAGGATGAGCATGGATT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47478628 535 + 50890351 GTGACTCTTTATTCGCCGAAAGTTTCCGGTGTTATCATTACTATGTCCGTATAGCCCCATATGCTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAG-GTGGAGCCTGATTTGTCTCTGGGACTCCAATTTCCATCCAACGATGCAGCACATAGGAGGTTGCAAGGATCGTGAATGAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCCTTCCAAGATGAAACATCTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATGTCCACACATCATC-TTCATACCATAAATACAcagtcgctcctccagacctgtggggtttacaggtgtttattgaaccaactataaaccaaaaatattcaggg-aaaaaatccacaaagttccaaaaagc--aaaactacgttgaatggacacaaatggaatggtatgtaggctgtgtcaggaattataagtaatctagagatgatttcatgtagacaggaggatgaggatggatt
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=9559.000000
s hg38.chr19_GL949751v2_alt         767691 8 +  1002683 ctatgcaa
s panTro4.chr19                   59718203 8 + 63644993 ctatgcaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590063 8 + 60714840 atatgcaa
i ponAbe2.chr19                   T 94031 C 0
s macFas5.chr19                   55637607 8 + 59248254 atatgcaa
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47761302 8 + 51301725 ATATGCAA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47479163 8 + 50890351 atatgcaa
i chlSab2.chr6                    C 0 T 75230
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=5510.000000
s hg38.chr19_GL949751v2_alt         767699 15 +  1002683 ttactatgcta--------tttt
s panTro4.chr19                   59718211 19 + 63644993 ttgctatgctattt----ttttt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590071 23 + 60714840 ttgctaggctttttgttgttgtt
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55637615 15 + 59248254 ttgctatgcct--------tttt
i macFas5.chr19                   C 0 I 27
s papAnu2.chr19                   47761310 15 + 51301725 ACCCTGTGCCA--------TTTT
i papAnu2.chr19                   C 0 T 35972
s chlSab2.chr6                    47403941 15 + 50890351 ttgctatgccg--------tttt
i chlSab2.chr6                    T 75230 I 27
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=494762.000000
s hg38.chr19_GL949751v2_alt         767714 428 +  1002683 ttttttttgagacagtctcactctctcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcccaggttcaagcgattgtcttccctcagcctccccagtagcctcccctaggattacaggcacgtgccaccatgcacagataaa-tttttttgtgtgtgtatttttagtagagatggggtttcagaatgttggaccagctggtcttgaactcctgacctcgtgatctacccaactcagcctcccaaagtgctgggattacaggcgtgagccacggtgcccagcttcgctatgccatttcatgcaaggggcttgagcatctgcagattttggtatctgaatggggatcctggaaccaatcacccaggaatagtgaaggaccacAGTATATAATTTTTATTTGTCAATCTTAA
s panTro4.chr19                   59718230 429 + 63644993 ttttttttgagacagtctcactctctcacccaggctggagtgcagtggcgcgatctcagctcactgcaacctccgcctcccaggttcgagcgaatctcttccctcagcctccccagtagcctcccctaggattacaggcacgtgccaccatgcacagataaattttttttttttttgtatttttaggagagatggggtttcagaatgttggatgggctggtcttgaactcctgaccttgtgatctacccaactcagcctcccaaagtgctgggattacaggcatgagccacggtgcccagcttcactatgccatttcatgcaagaggcttgagcatctgcagattttggtatctgaatggggatcctggaaccaatcacccaggagtagtgaaggaccacGGTATATAATTTTTATTTGTCAATCTTAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590094 423 + 60714840 gttgttttgagacagtctcagtctctcacccaggctggagtgcagtggcgcgatctcagctcactgcagcctccccctcccaggttcaagtgattctcttgcctcagcctccccagtagcctcccctaggattacaggcatgtgccaccatgcacagataaattttttttat-----tatttttagtagagatgggctttcagaatattggaccggctggtcttgaactcctgaccttgtgatctacccaactcagcctcccaaagtgctgggattccaggcgtgagccagggcgcccagcttcactatgccatttcatgcaagaggcttgagcatctgcagattttgatatctgaatggggatcctggaaccaatcacccaggaatagtgaaggaccactgTATATAATTTTTTTTTGT-AATCTTAA
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55637657 419 + 59248254 -ttgttttTcgg-agtctcactctctcacccaggctggagtgcagtggcacgatctcagctcactgcaacttctgcctcccaggttcaagtgattctcttgcctcagcctccccagtag------ctaggattacaggcacgtgccaccatgcacagataaattttttttcg--ttgtatttttagcagagactgggtttcactatgttgagcaggctgttctcgaactcctgatcgcatgatccacccaactcagcctcccaaagtgttggaattacaggcgcgagccaccacgcccagcttcactgtgccatttcatgcaagaggcttgagcatctgcagattttggcatctgaatggggatcctggaaccaatcacccaggaatagtgaaggactactgtatataatttttatttgccaattttaa
i macFas5.chr19                   I 27 I 314
s papAnu2.chr19                   47725353 419 + 51301725 -ttgtttttcgg-agtctcactctctcacccaggctggagtgcagtggcgcgatctcagctcactgcaacttccgcctcccaggttcaagtgatcctcttgcctcagcctccccggtag------ctaggattacaggcatgtgccaccatgcacagataatttttttttct--ttgtatttttagcagagactgggtttcactatgttgagcaggctgttctcgaactcctgatcgcatgatccacccaactcagcctcccaaagtgttgaaattacaggcacgagccaccacgcccagcttcacTGTGCCATTTCATGCAAGAggcttgagcatctgcagattttggcaTCTGAatggggatcctggaaccaatcacCCAGGAATAGTGAAGGACGACCgtatataacttttatttgccaatttaaa
i papAnu2.chr19                   T 35972 I 315
s chlSab2.chr6                    47403983 419 + 50890351 -tcatttttcgg-agtctcactctctcacccaggctggagtgcagtggtgcaatctcagctcactgcaacttccaccccccaggttcaagtgattctcttgcctcagcctccctggtag------ctaggattacaggaacgtgccaccatgcgcagataaattttttttct--ttgtatttttagtagagactgggtttcactatgttgagcaagctgttctcgaactcctgaccgcatgatccacccaactcagcctcccaaagtgttgggattacaggcgcaagacaccgcgcccagcttcactgtgccatttcatgcaagaggcttgagcatctgcagattttggcatctgaatggggatcctggaaccaatcacccaggaatagtgaaggacgactgTATATAATTTTTATTTGCCAATTTTAA
i chlSab2.chr6                    I 27 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=20745.000000
s hg38.chr19_GL949751v2_alt         768142 15 +  1002683 AAATAAAGCATAAAA
s panTro4.chr19                   59718659 15 + 63644993 AAATAAAGCATAAAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590517 15 + 60714840 AAATAAAGCATAAAA
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55638390 15 + 59248254 aaataaaGCATAAAA
i macFas5.chr19                   I 314 C 0
s papAnu2.chr19                   47726087 15 + 51301725 aaataaagcataaaa
i papAnu2.chr19                   I 315 C 0
s chlSab2.chr6                    47404402 15 + 50890351 AAATAAAGCATAAAA
i chlSab2.chr6                    C 0 I 325
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=5938.000000
s hg38.chr19_GL949751v2_alt         768157 10 +  1002683 AGTTTACAAC
s panTro4.chr19                   59718674 10 + 63644993 AATTTACAAC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590532 10 + 60714840 AAAGTACAAC
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55638405 10 + 59248254 AATGTATAAC
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47726102 10 + 51301725 aatgtataac
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e chlSab2.chr6                    47404417 325 + 50890351 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=529812.000000
s hg38.chr19_GL949751v2_alt         768167 434 +  1002683 AACAAGATAAAAAATAAGAAGTGTTTTtatagtgtgaggataagtttagatttattttttcctacgtgtaaccctatggtcctgtgttatttattgagaaaatattctattccaccttaaactacatggcagcctttgtcaactatga----agggactgtgtatccacagatgtattttagacacagttttctgcccagtggttctctgtatcccctctcatgaggatgctgcatttcatataaacttatagaaccccttaaaatttggtaacctgagttctctgatttgttattATAGGTTATTTAGtttgc----------ttttttttttctttcttgagacagactcttcctctgtcacccaagctggagttcagtggcttgagctcagctcactgcagcctccgcctcccaggttcaagcaattctcgtgcct----cagGTTTAG
s panTro4.chr19                   59718684 440 + 63644993 AACAAGATAAAAAATAAGAAGCGTTTTTAAAgtgtgaggataagtttagatttattttttcctacgtgtaaccctatggtcctgtgttatttgttgagaaaatattctattccaccttaaactacatggcagcctttgtcaactataa----agggactgtgtatccacagatgtattttagacacacttttctgcccagtggttctctgtatcccctctcatgaggatgctgcattttatataaacttatagaaccccttaaaatttggtaacctcagtcctctgatttgttattATAGGTTATTTAGtttgc----ttttttttttttttttttttcttgagacacactcttcctctgtcacccaagctggagttcagtggctcgagctcagctcaatgcaacctccgcctcccaggttcaagcagttctcgtgcct----cTGGTTTAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590542 434 + 60714840 AAGAAGAT-AAAAATAAGGAGTGTTTTtatagtgtgaggataagtttagatttattttttcctacgtgtaaccctatggtcctgtgttattttttgagaaaatattctattccaccttcaactacatggcagcctttgtcaactataa----agggactgtgtatccacagatgtattttagacacagttttctgtccagtggttctctgtatcccctctcatgaggatgctgcactttatgtaaccttatagaaccccttaaaatttggtaacctgagtcctctgatttgttattATAGGTTATTTAGtttgc---------tttttttttttttttcttgagacagactcttcctctgtcacccaagctggagttcagttgctcgagctcagctcactgcaacctccgcctcccaggttcaagccattctcgtgcct----cTGGTTTAG
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55638415 443 + 59248254 AACAAGATAAAATATAAGAAGTGTTTTtataatgtgaggataagttcagatttattttttcctacttgtaaccctgtggtcctgtgttatttgttgagaaaatattctattccaccttaaaccacatggcagcctttgtcaactataa----aggagctgtgtgtccacggatgtattttagacacaattttctgccccgtggttctctgtatcccctctcatgaggatgctgtactttatataaccttggagaaccccttaaaatgtggtaacctgagtcctctg-tttgttgttATAGGTTATTTAGTTTCCttttttttttttttttctttctttcttgagacagactcttcctctgtcacccaagctggagttcagtggtacgagctcagctcactgcaacctccgcctcccagattcaagcacttcttgtgtcA----CTGGTTTAG
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47726112 447 + 51301725 aacaagataaaaaataagaagtgttTTTATAATGTAAGGATaagttcagatttattttttcctacttgTAACCCTGTGGTCCTGTGTTATTTGTTGAGAAAATATTCTATTCCACCTTAAACCACATGGCAGCCTTTGTCAACTATAA----AGTTGCTGTGTATCCACGGATGTATTTTAGACACAATTTTCTGCCCAGTGGTTCTCTGTATCCCCTCTCATGAGGATGTTGTACTTTATATAACCTTGGAGAACCCCTTAAAATGTGGTAACCTGAGTCCTCTG-TTTGTTGTTataggttattttttttctttttttttttttttttttttctttcttgagacagactcttcctctgtcacccaagctggagttcagtggcacgagctcagctcactgcaacctccgcctcccagattcaagcactTCTTGTGCCACTTTCTTGTTTAG
i papAnu2.chr19                   C 0 I 36072
s chlSab2.chr6                    47404742 446 + 50890351 AACAAGATAAAAAATAAGAAGTGTTTTTATAATGTGAGGATAAGTTCAGATTTCTTTTTTCCTACTTGTAACCCTGTGGTCCTGTGTTATTTGTTGAGAAAATATTCTATTCCACCTTAAACCACATGGTAGCCTGTGTCAACTATAAATTTAGGAGCTGTATATCCACGGATGTATTTTAGACACAGTTTTCTGCCCAGTGGTTCTCTGTATCCCCTCTCATGAGGATGCTGTACTTTATATAACCTTAGAGAACCCCTTAAAATGTGGTAACCTGAGTCCTCTG-TTTGTTGTTATAGGTTATTTAGTttcctttttttttttttttt-ttcctttcttgagacagactcttcctctgtcacccaagttggatttcagtggtacgagctcagctcactgcaacctccacctcccagattcaagcacttctcgtgccA----CTGGTTTAG
i chlSab2.chr6                    I 325 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=29715.000000
s hg38.chr19_GL949751v2_alt         768601 37 +  1002683 TACTAGAAACTC-ATCAGGAAAATTAGAATGGCTTTTT
s panTro4.chr19                   59719124 38 + 63644993 TACTAGAAACTCAAGCAGGAAAATTAGAATGGCTTTTT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56590976 38 + 60714840 TACTAGAAACTCAAACAGGAAAATTAGAATGGCTTTTT
i ponAbe2.chr19                   C 0 I 94109
s macFas5.chr19                   55638858 38 + 59248254 TACAAGAAACTCAAGCAGGAAAATTAGAATGACTTTTT
i macFas5.chr19                   C 0 C 0
s chlSab2.chr6                    47405188 38 + 50890351 TACAAGAAACTCAAGTAGGAAAATTAGAATGACTTTTT
i chlSab2.chr6                    C 0 I 74977
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e papAnu2.chr19                   47726559 36072 + 51301725 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=600.000000
s hg38.chr19_GL949751v2_alt         768638 1 +  1002683 G
s panTro4.chr19                   59719162 1 + 63644993 G
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685123 1 + 60714840 G
i ponAbe2.chr19                   I 94109 C 0
s macFas5.chr19                   55638896 1 + 59248254 G
i macFas5.chr19                   C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e chlSab2.chr6                    47405226 74977 + 50890351 I
e papAnu2.chr19                   47726559 36072 + 51301725 I
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=59699.000000
s hg38.chr19_GL949751v2_alt         768639  91 +  1002683 TCACAATTACTCTGATAATGTTAAT------------------------------------AATACCTCTTAGATATTTTGCACATTACACATGAAGAAAAGTTTGAATCTCAGATAAAAAC---AAAAA
s panTro4.chr19                   59719163  91 + 63644993 TCACAATTACTCTGATAATGTTAAT------------------------------------AATACCTCTTAGATATTTTGCACATTACACATGAAGAAGAGTTTGAATCTCAGATAAAAAC---AAAAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685124  94 + 60714840 TCACAATTACTCTTAAAACCTTAAT------------------------------------AATACCTATTAGATATTTTGCATATTACACAGGAAGAAGAGTTTGAATCTCAGATAAAAACAATAAAAA
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55638897 124 + 59248254 TCACAATTGTTCTGATAATGTTAATAATACTTgagcgagactccgtctcaaaaaaaaaaaaaaTACTTGTTAGATATTTTGCATATTACACAT---GAAGAGTTTGAATCTCAGATAAAAAC---AACAA
i macFas5.chr19                   C 0 I 3
s chlSab2.chr6                    47480203  91 + 50890351 TCACAATTGCCCTGACAACGTTCAT------------------------------------AATACCTATTAGATATTTTGCATATTACACACGAAGAAGAGTTTGAAACACAGATAAAAAC---GACAA
i chlSab2.chr6                    I 74977 I 3
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47726559 36072 + 51301725 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=279271.000000
s hg38.chr19_GL949751v2_alt         768730 257 +  1002683 TACATCAAAAGTCTTTAATGTAAGCACAGAATTCAATCACCTCATGTGTGAGAGGTTGGATCTGAGACGTCTTTTGAGTCTGGTCATAGTGAAGGATGCAAGGTGGCAATTGTAGTCACAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAACATGTAAACTGCATGGGCAGGGCGCCAAATAACAT
s panTro4.chr19                   59719254 257 + 63644993 TTCATCAAAAGTCTTTAATGAAAGCACAGAATTCAATCATCTCGTGTGTGAGAGTTTGGATCTGAGACGTCTTTTGAGTCTGGTCATAGTGAAGGACGCAAGGTGTCAATTCTAGTGAGAACAATTTCCAGGAAGCCATGTTCCGCTCTTGAGCGAGCACCCACTGGGCCTCATGCAAGGTAGAAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAGCATGTAAACTGCATGGGCAGGGCGCCAAAAAACAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685218 256 + 60714840 TACATGAAAAGTCTTTCACGTTAGCACAGATTTTAGGCATCTCGTGTTCGGGAGGTTGGATCTGAGACGTGTTTTGAGT-TGGTCATAGTGAAGGACACTAGGTGTCAATTCTAGTGACAACAATTTCCAGGAAGCCATGTTCTGCTCTTGAGCGAGCACCCACTGGGCCTCGTGCAAGGTAGAAAGAGCCTGTGTACGTCACCCTCCCATGATGTGGTCAGCATGTAAACTGTATGGGCAGGGCGCCAAATAACAT
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639024 245 + 59248254 TACATCAAAAGTCTTTAATGT-AACCCAGAATTCAATCATCTTGTGTTC-GAAGATTGGATCTGAGACGTGTTTTGAGC-TGGTCATAGTGAATGACGCAAGGTG---------GTCACAACAATTTCCAGGAAGCCATTTTCTGCTCTTGGCTGGAGGCCCGCTGGGCATCATGTAACGTAGAAACAGCCTGCATACGTCACCCTCCCATGATGTGGTCGGCATGTCAACTGCATGGGCAGAGCGCCACATAACAT
i macFas5.chr19                   I 3 I 3
s papAnu2.chr19                   47762631 256 + 51301725 TACATGAAAAATCTTTCACGTCAGCACAGATTTTAGTCACCTCATGTCCGGGAGGTTGGATCTGAGACGTGTTTTGAGC-TGGTCATAGTGAAGGACGCAAGGTGTCAGTTCTAGTGAGAACAATTTCCAGGAAGCCATTTTCCACTCTTGAGTGAGCACCCGCTGCACCTCATGCAAGGTAGGAAGAGCCTGCGTACGTCACCCTCCCATGATGTGGTCAGCACGTCAACTGCATGGGCAGGGCCCCAGATAACAT
i papAnu2.chr19                   I 36072 C 0
s chlSab2.chr6                    47480297 256 + 50890351 TACATGAAAAGTCTTTCACGTCAGCACAGACTTTAGTCACCTCGTGTCCGGGAGGTTGGATCTGAGATGTGTTTTGAGC-TGGTCATAGTGAAGGACGCAAGGTGTCAGTTCTAGTGAGAACAATTTCCAGGAAGCCATTTTCCCCTCTTGAGTGAGCACCCGCTGCACCTCATGCAAGGTAGGAAGAGCCAGCGTACGTCACCCTCCCATGATGTGGTCAGCACGTCAACTGCATGGGCAGGGCGCCAGATAACAT
i chlSab2.chr6                    I 3 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=110827.000000
s hg38.chr19_GL949751v2_alt         768987 129 +  1002683 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCTCCTGTCTGCACCGGCAGCACCATGTCGCTCACTGTCGTCAGCATGGCGTGCGTTGGTGAGTCCTGGAAGGGAATAGAGGGAGGGAGAGTGGGGA
s panTro4.chr19                   59719511 129 + 63644993 CCTGTGCGCTGCTGAGCTGAGCTGGGGCACGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGTGCGGGGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685474 129 + 60714840 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCGTCAGCATGGCGTGTGTTGGTGAGTCCTGGAAGGGAATCGAGGGAGGGAGCACTGGGG
i ponAbe2.chr19                   C 0 T 37991
s papAnu2.chr19                   47762887 129 + 51301725 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCGGCAGCACCATGTCACTCATGGTCGTCAGCCTGGCGTGTGTTGGTGAGTCCCGGAAGGGAATCGACGGAGGAAGCGCTGGgg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480553 129 + 50890351 CCTGTGCGCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACTGGCAGCACCATGTCGCTCATGGTCGTCAGCGTGGCGTGTGTTGGTGAGTCCCGGAAGGGAATTGGCGGAGGAAGCGCTGGGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55639269   3 + 59248254 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=43200.000000
s hg38.chr19_GL949751v2_alt         769116  94 +  1002683 TGGAGATCTCGGCCTAGAGGTAAAGATATGGGCCTGGA-GTGGAGATATGGGCCTGGAGTGGAGATA-------------------TGGGCCTGGGTGTGGAGATATGGGCCTG
s panTro4.chr19                   59719640  93 + 63644993 TGGAGATCTCGGCCTAGAGGTAAAGATCTGGGCCTGGA-GTGGAGATATGGGTCTGATGTGGAGATA-------------------TGGGCCTGGA-GTGGAGATATGGGCCTG
i panTro4.chr19                   C 0 I 15885
s ponAbe2.chr19                   56647612  94 + 60714840 TGGAGATCTGGGCTCAGAGGTGGAGATATGGGTCTGGAGGTGGAGTTATGGGCCTGGAGTGGAGATA-------------------GGAACCTGGA-TGGGAGATAGGAGCCTG
i ponAbe2.chr19                   T 37991 C 0
s papAnu2.chr19                   47763016 112 + 51301725 tggagatctgggcctggagg-ggagatCTGGACCTGGAGGTTGAGttatgggcctggagtggagatatgatCCTGGAGTGTagatctgggcctgga-gtggagatctgggcctg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480682  54 + 50890351 TGGAGATC----------------------------------------TGGGCCTGGAGTGGGGATA-------------------TGGGCCTGGG-GTGGAGATATGGGCCTG
i chlSab2.chr6                    C 0 I 93
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55639269   3 + 59248254 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=3670.000000
s hg38.chr19_GL949751v2_alt         769210 18 +  1002683 ------------------GAGGTGTAAATATGGGCC
s panTro4.chr19                   59735618 18 + 63644993 ------------------GAGGTGGATATCtgggcc
i panTro4.chr19                   I 15885 C 0
s ponAbe2.chr19                   56647706 17 + 60714840 -------------------GAGTGGAGATATGGGCC
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47763128 36 + 51301725 gagtggagatatgatCGTGGAGTGCAGATATGGGtc
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e chlSab2.chr6                    47480736 93 + 50890351 I
e macFas5.chr19                   55639269  3 + 59248254 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=7730.000000
s hg38.chr19_GL949751v2_alt         769228 8 +  1002683 TGGAGTGG
s panTro4.chr19                   59735636 8 + 63644993 tggagtgg
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647723 8 + 60714840 TGGAGTGG
i ponAbe2.chr19                   C 0 I 37895
s papAnu2.chr19                   47763164 8 + 51301725 tggagtgg
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480829 8 + 50890351 TGGAGTGG
i chlSab2.chr6                    I 93 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e macFas5.chr19                   55639269 3 + 59248254 I
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=11463.000000
s hg38.chr19_GL949751v2_alt         769236 17 +  1002683 AGATATGGGCCTGGAGG
s panTro4.chr19                   59735644 17 + 63644993 aaatatgggcctaggat
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685626 17 + 60714840 AGATATGGGCCTAGAGG
i ponAbe2.chr19                   I 37895 T 37895
s papAnu2.chr19                   47763172 17 + 51301725 agatatgggcctggggt
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480837 17 + 50890351 AGATACGGGTCTAGAGT
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e macFas5.chr19                   55639269  3 + 59248254 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=28348.000000
s hg38.chr19_GL949751v2_alt         769253  57 +  1002683 GGAGATATGGGCCTGGGT--------------------------------------------------------------------GTGGAGATATGGGCCTGGA-GTGGAGATACGGGCCTGGAG
s panTro4.chr19                   59735661  57 + 63644993 ggagatatgggcctgggt--------------------------------------------------------------------gtggagatatgggactgga-gtggagatatgggcctagag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56647748  58 + 60714840 AGAGATGCGGGCCTGGAG--------------------------------------------------------------------GTGGAGATATGGGCCTAGAGGTGGATATCTGGGCCTGCAG
i ponAbe2.chr19                   T 37895 I 37837
s papAnu2.chr19                   47763189 125 + 51301725 ggagatatgggcctggaggGAAGATATGAACCTAGAGGGGAGATATGGGTTTGGAGTGGAGCCTGGAGAGCAGATTTGAGCCTGGAGaggagatatgggcctggg-gtggagataGGAGCCTGGAG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480854 113 + 50890351 GGAGATATGGGCCTGGGCTGGAGATCTGGGCCTGGAGTGGAGATA------------GGATCCTGGAGTGGAGATCTGTTCCTGGAGTAGAGATATGGGCCTGGA-GTGGAGATATGGGTCTGGAG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55639269   3 + 59248254 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=181852.000000
s hg38.chr19_GL949751v2_alt         769310 293 +  1002683 TGGAGATATGGGCCTGG-AGTGGAGATATGGGCCTGCAGGTGGAGATCTGGGCCTGGA---------------------------------------GTGGAGATATGGGCCTGGAGTGGAGATATGGGTCTGATGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGCCTAGAGGGGAGATCTGGGCCTGGAGTGGAGATATGGGTCTGATGTGGAGATATGGGCCTGGAGTGGAGATATGGGTCTGATGTGGAGATATGGGCCTGGAGTGGAGATAGGGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGAT
s panTro4.chr19                   59735718 331 + 63644993 tggagatatgggcttgg-ggtggagatctgggcctg-gggtggagatatgggcctggaggtggagttACTGGCCTTCAGTAGAGATATGGGCCTGGTGTGGAGATATGGGCCTGGATTGGAGATATGGGCCTAGGGTGGAGATCTGAGCCTGGAGTGGAGACATGGGCCTGGATTGGAGATATGGGCTTACGGTGGAGATCTTGGCCTGGATTGGCGATATGGGCCTGGATTGGCGATATGGGCCTAGGGTGGAAATATCGGCCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATAGGTCTAGGGTGGAAATATTGGCCTGGAGTGGAGAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56685643 293 + 60714840 TGGAGTTATGGGCCTGGAAGTGGAGTTATGGGCCTG-AAGTGGAGATCTGGGCCTGGA---------------------------------------GTGGAGATATGATCCTGGAGTGGAGATATGGGCCTGGGGTGGAGATACAGGCCTGGAGCAGAGATACAAGCCTTGAGTGGAGATATGGGCCTGGAGTTGAGAGAGGAGCCTGGAGTGGAGTTATGGGCCTGGAGTGGAGACATCAGCCTGGAGAGGAGATATGGGCCTGGAATGGAGATTCAGACCTGAAGTGGAGATCTGGGCCTAGAGCGGAGATCTGGGCCTGTTGTGTAGAT
i ponAbe2.chr19                   I 37837 C 0
s papAnu2.chr19                   47763314 292 + 51301725 GGGAGATATGGGTTTGG-AGCAGAAACATGGGCCTG-GGGAGGAGATCCGGGCCTGGA---------------------------------------GTGGACTTAGGAGTCTGGAGTGGAGATATGGTCCTGGGGTGGAGATAGGATCCTGCAGTGGAGATATGAGCATGGAGAGGAGATATGGGCCTGAGGTGGAGATAAGGGCatggagtggagatatgggcctgggttGGAGATAGGAGCTTGGAAAGGAGATATGGGTTTGGAGTGGAGATATGGGTCTGGAGTGCAGATAtgagcctggagtggagatatgggcctggagtTGAGAT
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47480967 292 + 50890351 TGGAGACATGGGTCTGG-AGTGGAGATATGGTTCTG-GAGAGGAGATATGAGCCTGGA---------------------------------------GAGGAGATATGAGCCTGGGGTGGAGATATGGGTCTGGAGTGCAGATATGGGCCTGGAGTGGAGATATGGGTCTGGAGAAGAGATATGAGCCTGGAGAGGAGATATGGGCCTGGGGTTGAGATATGGGTCTGGAGTGGAGATATGGGCCTGGAGTGGAGATATGGGTCTGGAGAGGAGATATGAGCCTGGAGAGGAGATATGGGCCTGGGGTGGAGATAGAGGCCTGGAGTGGAGAT
i chlSab2.chr6                    C 0 I 238
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55639269   3 + 59248254 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=2288.000000
s hg38.chr19_GL949751v2_alt         769603 6 +  1002683 CTGGGC
s panTro4.chr19                   59736049 6 + 63644993 ATGGGC
i panTro4.chr19                   C 0 T 32120
s ponAbe2.chr19                   56685936 6 + 60714840 CTAGGC
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47763606 6 + 51301725 ATGGGC
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e chlSab2.chr6                    47481259 238 + 50890351 I
e macFas5.chr19                   55639269 3 + 59248254 I
e rheMac3.chr19                   60526244 0 + 64156825 C

a score=-1257.000000
s hg38.chr19_GL949751v2_alt         769609  6 +  1002683 -------------------CAGGAA
s ponAbe2.chr19                   56685942  6 + 60714840 -------------------CTGGAG
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47763612 24 + 51301725 TTGTTGTGTAGATCTAGGCCTGGG-
i papAnu2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e chlSab2.chr6                    47481259 238 + 50890351 I
e macFas5.chr19                   55639269  3 + 59248254 I
e rheMac3.chr19                   60526244  0 + 64156825 C
e panTro4.chr19                   59736055 32120 + 63644993 T

a score=600.000000
s hg38.chr19_GL949751v2_alt         769615 1 +  1002683 G
s ponAbe2.chr19                   56685948 1 + 60714840 G
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47763636 1 + 51301725 G
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481497 1 + 50890351 G
i chlSab2.chr6                    I 238 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e macFas5.chr19                   55639269 3 + 59248254 I
e rheMac3.chr19                   60526244 0 + 64156825 C
e panTro4.chr19                   59736055 32120 + 63644993 T

a score=37157.000000
s hg38.chr19_GL949751v2_alt         769616 65 +  1002683 TGTTGATCTGGGCCTGGAGCCTGGGTCTCTCCACAGCTGAGAGCCCTGTTCTTGGCAGCAGGTAG-
s panTro4.chr19                   59703935 65 + 63644993 TGGGGATATGGACCTGGAGGCTGGGTCTCTGCACAGCCGAGGGCACTGCTCTTGGGTGCAGGTAG-
i panTro4.chr19                   T 32120 I 63496
s ponAbe2.chr19                   56685949 65 + 60714840 TAGAGATCTGGGCCTGGAGGCTGAGTCTCTGCACAGCTGAGATCCTTGTTCCTGGGGGCAGGTAG-
i ponAbe2.chr19                   C 0 I 1
s papAnu2.chr19                   47763637 65 + 51301725 TGCAGATCTGGATCAGGAGGCTGGGTCTCTGCACAGCTGACATCCCTGCTGC-GGGGGCAGGTGGG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481498 65 + 50890351 TGCAGATCTGGATCCGGAGGCTGGGTCTCTGCACAGCTGACATCCCTGCTGC-GGGGGCAGGTGGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e macFas5.chr19                   55639269  3 + 59248254 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=606496.000000
s hg38.chr19_GL949751v2_alt         769681 735 +  1002683 CAGGGAGGCTAAGTTTACCTTCAGCCCAGCAAGGGCCTGGCTGCCAAGACACACAGTGCAGTGGGGGCAGCAGGG--TGCCCTGGTTTGCCTGCAGTTGGATCGTCTATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGGGGGCCTGGCCACTCATGGGTGAGTCCTTCCCCAAACCTTAGGGTGTCATCTCCCCACATAAGAGGATTTTTCTGAAACAGGAGGGAAGTCCTGTCGGGGAGTCTCTCATAAACTAGGAAGAGGGGACCCTTGGATACTCGGCCCACATTTCTGACCTCGCCCTCCCCGGCCTTTCTTTCCCTTTCCTGAGTCAAGCTCTGTGAAGACTGGGGTGAGACTGGGGTGCTCCAAGCTGGGGTGTGCAGGGAGGAAGTGGTGTCAGCAGCAGAGAAAGAGAGGGAAGCAGTGCTAGGAACAGCAGGTCCTCTGAGGACAAAGGTATAACTGACACCCTCCAGCGTTTCCGTGACGGTAGGGACTGCAGTGTGGCTGCGGTCTTTCTACCAGAAGAGG-GGGGAAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGA-GGGGGCTCAGTTCATGAATTGGCTGATATTCCATTCACATAGGACATGCCCTCCATGCCGTGTCTACTTTGTGTTGTTTTATGTGAGTAATTTTGCAGTATTAAAATCTAGTAAGAGTCACTTATTCAGCACTTGCTCAAAGTTCTCAGCTGACACT
s panTro4.chr19                   59767496 737 + 63644993 CACTGAGGATGAGTTTCCCTTCAGCCCAGCAAGGGCCTGGCTGCCAAGACGCACAGTGCAGTGGGGGCAGCAGGG--TGCCCTGGTTTGCCTGCAGATGGATCGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGCTGCAGAGGGCCTGTCCACACATGGGTGAGTCCTTCCCCATATCTTAGGGTGTCATCTCCCCACATAAGAGGATTTTCCTGAAGTGGGAGGGAAGGCCTGTCGGGGAGTCTCTCATAAACTAGGAAGAGGGGACCCTGGGATGCTCGGCCCACAGTTCTGACCTCGCCCTCCCCGGCCTTTCTTTCCCTTTCCTGAGTCAAGCCCTGTGAAGACTGGGGTGAGACTGGGGTGCTCCAAGCTGGGGTGTGCAGGGAGGAAGTGGTGTCAGCAGCAGAGAAAGAGAGGGAAGCAGTACTAGGAACAGCACGTCCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGCGTTTCCGTGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCAGTTCATGAATTGGCTGATATTCCATTCACATAGGACATGCCCTCCATGCCGTGTCTACTTTGTGTTGTTTTATGTGAGTAATTTTGCAGTATTAAAATCTAGTAGGAGTCACTTATTCAGCACTTGCTTAAAGTTCTCAGCTGACACT
i panTro4.chr19                   I 63496 C 0
s ponAbe2.chr19                   56686015 737 + 60714840 CAGCGAGGGTGAGTTTAACTTCAGCCCAGCAAGGGCCTGGCTGCCAAGACACACAGCCAAGTGGGGGCAGCAGGG--TGCCCTGGTTTGCCTGCAGATGGATGGTCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGGTCCAGAGGGCCTGTCCACACATGGGTGAGTCCTTCCCCAAACCTTAGGGTATCATCTCCCCACATAAGAGGATTTTCCTGAAACTGGAGGGAAGTCCTGTCGGGGAGTCTCTCATAAACTAGGAAGAGGGGACCCTCGGATGCTCGGCCCATAGTTCTGACCTCGCCCTCCCCAGCCTTTCTTTCCCTTTCCTGATTCAAGCTCTGTGAAGACTGGGGTGACACTGGGGTGCTCCAAGCTGGGGTGTGCAGGGAGGAAGTGGTGTCAGCAGCAGAGAAAGAGAGGGAAGCAGTGCTAGGAACAGCAGGTCCTCTGAAGACAAAGGTGTAACTCACACCCTCCAGGGTTTCTGTGACGGTAGGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGGCCCTGACATTCCAAATCCTCTGATGGGGGCTCACTTCATGAATTGGCTGATATTCCATTCACATAGGACATGCCCTCCATGCCGTGTCTACTTTGTGTTCTTTTATGTGAGTAATCTTGCAGTATTAAAATCTAGTAAGAGTCGCTTCTTCAGCACTTGCTTAAAGTTCTCAGCTGACACT
i ponAbe2.chr19                   I 1 C 0
s papAnu2.chr19                   47763702 738 + 51301725 CAGCCAGGGTGAGTTTACCTTCAGCCCAGCAAGGGCCTGGCTGCCCAGACGCACAG-CCCGTGGGGGCAGCAGGGGAGGCCCTGGTTTGCCTGCAGATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGGTCCAGAGGGCCCGTCCACACACGGGTGAGTCCTTCCCCAAACCTTAGGGTGTCATCTCCCCACCTAAGAGGATTTTCCTGAAACAGGAGGGAAGTCCTGTCAGACAGTCTCTCATAAACTAAGTAGGGGAGACCCTGGGGTGCTCGGCTCACACTTCTGACCTCGTCCTCTCTGGCCTTTCTTACCCTTGGCTGAGTCAAGCTCTGTGAAGACCGGGGTGAGCTTGGGGTGCTCCAAGCTGAGGTGTGCAGGGAGGAAGTGGTGTCAGCgactgaggaagggagggaagcagtGCTAGGAACAGCAGGTCCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGTGTTTCCATGAcggtcagggctgcagtgtggCTGCTGTCACTCTAccagaagatgtggagaaaccaCAGCCATGACCCTGACATTCCAAATCTTCTGATGGGGACTCAGTTCATGCACTGGCTGATGTTCCATTCACAAAGGACATGCCCTCCATGCCGTGTCTactttgtgttgttttatgtGAGTGATCTTGAAGCATTAAAATCTAGTAAGAGTCCCTTATTCAGCACTTGTTCAAAGCTCTCAGCTGACACC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47481563 739 + 50890351 CAGCCAGGGTGAGTTTACCTTCAGCCCAGCAAGGGCCTGGCTGCCCAGACGCACAGCCCCGTGGGGGCAGCAGGGGAGGCCCTGGTTTGCCTGCAGATGGATCATCCATCATGATCTTTCTTTCCAGGGTTCTTCTTGGTCCAGAGGGCCTGTCCACACACGGGTGAGTCCTTCCCCAAACCTTAGGGTGTCATCTCCCCACCTAAGAGGATTTTCCTGAAACAGGAGGGAAGTCCTGTCAGAGAGTCTCTCATAAACTAAGAAGGGGGGACCCTGGGGTGCTCGGCTCACACTTCTGACCTCGTCCTCTCTGGCCTTTCTTACCCTTGGCTGAGTCAAGCTCTGTGAAGACCGGGGTGAGCTTGGGGTGCTCCAAGCTGAGGTGTGCAGGGAGGAAGTGGTGTCAGTGACTGAGGAAGGGAGGGAAGCAGTGCTAGGAACAGCAGGTCCTCTGAGGACAAAGGTGTAACTCACACCCTCCAGTGTTTCCATGACGGTCAGGGCTGCAGTGTGGCTGCTGTCATTCTACCAGAAGAGGTGGGGAAACCACAGCCATGACCCTGACATTCCAAATCTCATGTTGGGGGCTCAGTTCATGCACTGGCTGATATTCCATTCACAAGGGACATGCCCTCCATGCCGTGTCTACTTTGTGTTGTTTTATGTGAGTCATCTTGAAGTGTTAAAATCTAGTAAGAGTCCCTTATTCAGCACTTGTTCAAAGCTCTCAGCTGACACC
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 3104 + 49145316 T
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55639269   3 + 59248254 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=434740.000000
s hg38.chr19_GL949751v2_alt         770416 460 +  1002683 T--GTTGTAGGGAGAC--GCCATGTCTAT------GTGGGGTGGGTCCTTCCTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCT-----------------TAGAAA-GTGGAAATGGG-AGAATCTTCTGAGCACAGGGAGGGAGGGGTGGCTCCACATCCTCCTCTCTAAGGCAGTGCCTCCTTCTCCCCCAGGTGGTCAGGACAAACCCTTCCTGTCTGCCCGGCCCAGCACTGTGGTGCCTCGAGGAGGACACGTGGCTCTTCAGTGTCACTATCGTCGTGGGTTTAA---------CAATTTCATGCTGTACAAAGAAGACAGAAGCCACGTTCCCATCTTCCACGGCAGAATATTCCAGGAGAGCTTCATCATGGGCCCTGTGACCCCAGCACATGCAGGGACCTACAGATGT--CGGGGTTCACGCCCACACTCCCTCACTGGGTGGTCGAC---ACCCAGCAACCCCCTGGTGATCATGGTCACAGGTCAGAG
s panTro4.chr19                   59768233 456 + 63644993 TTTGTTGTAGGGAGAT--GACATGTCTAT------GCGGGGTGGGTCCTTCTTGTAGCCCTGGGCACCCAGGTGTGGTAGGAGCCT-----------------TAGAAA-GTGGAAATGGG-AGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGCAGTGCCTCCTTCTCCCCCAGGTGGTCACGACAAACCCTTCCTGTCTGCCTGGTCCAGTGCTGTGGTGCCTCGAGGAGGACATGTGACTCTTCGGTGTCACTATCGTGGTGGGTTTAA---------CAATTTCATGCTGTACAAAGAAGACAGAATCCACGTTCCCATC------GGCAGAATATTCCAGGAGAGCTTCAACATGAGCCCTGTGACCACAGCACATGCAGGGAACTACACATGT--CGGGGTTCACACCCACACTCCCCCACTGGGTGGTCGGC---ACCCAGCAACCCCGTGGTGATCATGGTCACAGGTCAGAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56686752 462 + 60714840 TTTGTTGTAGGGAGAT--GCCATGTCTGT------GTGGGGTGGGTCCTTCCTGTAGCCCTGGGCTCCCAGGTGTGGTAGGAGCCT-----------------TAGAAA-GTGGAAATGGG-AGAATCTTCTGAGCACAGGGAGGGAGGGGCGGCTCCACATCCTCCTCTCTAAGGTGGCATCTCCTTCTCCCCCAGGTGGTCAGGACAAACCCTTCCTGTCTGCCTGGCCCAGCGCTGTGGTGCCTCGAGGAGGACACGTGACTCTTCGGTGTCACTATCGTGGTGGGTTTAA---------CAATTTCATGCTGTACAAAGAAGACAGAATCCATGTTCCCATCTTCCAGGGCAGAATATTCCAGGAGAGCTTCAAGATGAGCCCTGTGACCCCAGCACATGCAGGGACCTACACATGT--CGGGGTTCACACCCACACTCCCCCACTGGGTGGTCGGC---ACCCAGCAACCCCGTGGTGATCATGGTCACAGGTCAGAG
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47764440 473 + 51301725 TTTGTTGTAGGGAGAC--GCCATGTCTAT------GTGGGATGGGTTCTTCCTGTAGCCCTGGACACCCAGGTGTGGTAGGAGCCT-----------------TAGAAACATGGAAAGGGGAAGAATCTTCTGagcacagggagggaggggcGGCTCCACATCCTCCTCTCTAAGGTGGAACCTCCTTCTCCCCCAGGTGGTCAGGACAAGACCTTCCTGTCTGCCCGGCCCAGCGATCTGGTGCCTCAGGGAGGACACGTGACTCTTCGGTGTCACTATCGTCGTGGGCTTTACAACTTTACCAACTTCACTCTGTACAAAGACGACAGAAGCCACGTTCCTGTCTTCCATGGCAGAATATTCCAGGAGAGCTTCCTCATGGGCCCTGTGACCCCGGCACACGCAGGGACCTACAGATGT--CGGGGTTCATACCCGCACTCCCCCACTGAGTGGTCGGC---ACTCAGCGACCCCCTGGCTATCAGGGTCACAGGTCAGAG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47482302 473 + 50890351 TTTGTTGTAGGGAGAC--GCCATGTCTAT------GTGGGATGGGTTCTTCCTGTAGCCCTGGACACCCAGGTGTGGTAGGAGCCT-----------------TAGAAACATGGAAAGGGGAAGAATCTTCTGAGCACAGGGAGGGAGGGGTGGCTCCACATCCTCCTCTCTAAGGCGGCACCTCCTTCTCCCCCAGGTGGTCAGGACAAGACCTTCCTGTCTGCCCGGCCCAGCGATCTGGTGCCTCAGGGAGGACACGTGACTCTTCGGTGTCACTATCGTCGTGGGTTTAACAACTTTACCAACTTCACTCTGTACAAAGATGACAGAAGCCACGTTCCCATCTTCCACAGCAGAATATTCCAGCAGAGCTTCCTCATGGGCCCTGTGACCCCGGCACACGCAGGGACCTACAGATGT--CGGGGTTCACACCCGCACTCCCCCACTGAGTGGTCGGC---ACACAGTGATCCCCTGGTGATCAGGGTCACAGGTCAGCG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45769926 481 + 49145316 --TATTCCAGGAAGACCTTCCATGTCCACTCTGGGGTGGGCCGGGTCCCTGTCCCACCACCAGGTACCCAGG-GCATCAGGGGCTTCATGTTACAGGGCAAAGCAGAACAGTGGGAAGAAG-GAAAGCCCCCAAGGACAGTGGCGGGTGGGGGGCTCCACACTCCCCTCTCT-AGGCTGCGCCTCCTCCTCTTCCAGGTGCTCTGTACAAACTCTCCCTGTCAGCCCGGCCGAGCCCTGTGGTTCCCCAGGGAGGACGTGTGACTCTCTCCTGTGATTCTCATCTTCGGTTTGT---------CACATTCAAAATATACAAAACATCTGGGACCCAGGACCGTGAGCTGCACA-CTGGCCGTTCCA--ATGACTTCACCATCAACCCTGTGACCCCAGGACATGCAGGGACCTACAGATGTTCTGGATCTTTCAGCCGCACCTCAC-----AGTGGTCAGCTGTGCACAGCAACTCCCTGATGCTATTGGTCACAGGTAGGAG
i calJac3.chr22                   T 3104 I 1011
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55639269   3 + 59248254 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=997368.000000
s hg38.chr19_GL949751v2_alt         770876 1302 +  1002683 GCTTTCTGTCTGGGCTTCTCACTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGGTGTCCATCAGGGTCCCATCACCCAGGCCCCAACTGTATTTGGGGTCAAGGGGGATTGAATACAGGGGAAATGGGCGCtgtggtgggaagaatcactgtcgccaatgatggctacattgtaaaccctggagcctgtgactatttatgttatagggcaggggactgaaggggaaggtggagctcaggttgttgatgagttgaccttgagatggggagacagcctggactgtcctgctgggctcagtgtaatcacaagggtccgcgtgagaggtggaggaagaggggagtggggattagagcagtgtagtgggagggagacgctatcagccactgtgggctttgaaggtggaggaaggccactagtcacagaatg-caggtggcctctaagggctggagaagtcaagagaactgattcgctgagtctccagagggaacgcagccctgcagatgccttgatttcagcacagggagaactggatccaatttctgtccccagaagtggaaggggtcagtgtgttctctcctgctgccatgtttgtgataattttctgcagcagcaacaggaaaccgacacaGGAACCCAGGTCAAGGACAAGCTAGGAAACCAAACAAGGAtagccaggtgtggtggtgggcacgagtaatccaacgactggggaggctgaggcaagagaatcacttgaaccggggaggcagaggttgcagtgagccaagacaacaccactgcactccagcctgggtgaaaaagtga----ctgtctcaaaaataaaTTAATTAATCAATTAATTAAagaaaccaaacaaggagaaggttggctaccgtgggatcagcaagggtgggatgctgatgccaccaccaggctccatccacataggaaggggttgatgctcctggaaccagcaccagggaccaccctatggaagctggggccaTGGAGAAGGCACAGACATGGCAGGAGAGGCTCCCAATCCCCATCAGGAACAGGGTGTGTGGACACTGATGTCTGCCTTACTGATGAGTTGATACCTC-TGCCAGAGACTCCAATTTGTTCAAAAGAGATTGATTCAGGCTGCTGAGAGCCTGGACATGCAGCCTG-------TCCTCTTCCACCCCCACATAGACAGCAGGAAAGAGACTAGTGGGAAAGAGATACAACAGCCCAAGAGATGAGGCTCTCTTCACAGTGGGAAGGGAGTCAGGGGCTACTGGAGACAGAGGGACAGAGAAGAGGGAGGAAGACAAATGGAGGG
s panTro4.chr19                   59768689 1302 + 63644993 GCTTTCTGTCTGGGCTTCTCACTGTCCCACCTCCTGAATCCCAGAGCTTCTGGTGGGGGTGTCCCTCAGGGTCCCATCACCCAGGCCCCATCTGTATTTGGGGTCAAGGGGGATTGAATACAGGG-AAATGGGCGCtgtggtggaaagaataactgtccccaatgatggctacattgtaatccctggagcctgtcactatttacgttatagggcaggggactgaaggggaaggtggaactcaggttgttgatgagttgaccttgagatggggagacagcctggactgtcccggtgggctcagtgtaatcacaagggtccacatgagaggaggaggaagaggggagtggggattagagcagtgtagtgggagggagacgctatcagccactgcgggctttgaaggtggaggaaggccactagtcacagaatg-caggtggcctctaagggctggagaagtcaagagaactgattcgctgattctccagagggaacgcagccctgtagacgccttgatttcagcacagggagaactggatccaatttctgtctctagaagtggaaggggtcagtgtgttctctcccgccgccatgtttgtggtaattttctgcagcagcaacaggaaaccaacacaGGAACCCAGGTCAAGGACAAGTTAGGAAACCAAACAAGGACagccaggtgtggtggtgggcacaagtaatccaatgactggggaggctgaggcaagagaatcacttgaactggggaggcagaggtttcagtgagccaagacaacaccactacactccagcctgggtgaaaaagtga----ctgtctcaaaaataaattaattaatcaattaattaaagaaaccaaacaaggagaaGGTTggctaccctgagatcagcaagggcaggatgctgatgccaccaccaggctccatccacataggaaggggttgatgctcctggaaccagcaccaggggccaccctatggaagctggggccatggagAAGGCACACACATGGCAGGAGAGGCTCACAATCCCCATCAGGAACAGGGTGTGTGGACACTGATGTCTGTCTTACTGATGAGTTGATACCTCCTGCCAGAGACTCCAATTTGTTCAAAAGAGATTGATTCAGGCTGCTAAGAGCCTGGACATGCAGCCTG-------TCCTCTTCCACCCCCACATAGACAGCAGGAAAGAGATTAGTGGGAAACAGATACAACAGCCCAAGAGATGAGGCTCTCTTCACAGTGGCAAGGGAGTCAGGGGCTACTGGAGACAGAGGGACAGAGAAGAGGGAGGAAGACAGATGGAGGC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56687214 1303 + 60714840 GCTTTCTGTCTGGGCTTCTCACTGTCCCACCTCCTGAATCCCACAGCTTCTGGTGGGGGTGTCCGTCAGGGTCCCATCATCCAGGCCCTGACTGTATTTGGGGTAAAGGGGGATTGAATACAGGGGAAATGGTCACtgtggtggaaagaataactgtccccagtgatggccacattgtaatccctggagcctgtgactatttatgttataggggaagggactgaaggggaagatggagctcaggttgttgatgagttcaccttgagatggggagatggcctggactgtcccgctgggctcagtgtaatcacaagggtccacatgagaggaggaggaagaggggagtggggattagagcagcgtagtgggagggagatgctatcaaccactgcgggctttgaagatggaggaaggccactagtcactgaatg-caggtggcctctaagggctggagaagtcaagagaactgattcgctgagtctccagagggaacgcagccctgtagacgccttgattttaatgcagggagaactggatccaatttctgtctccagaagtggaaggggtcagtgtgttctctcctgccgccatgtttgtgataattttctgcagcagcaacaggaaaccaacacaGGAACCCAGGTCAAGGACAAGTTAGGAAACCAAACAAGGAtagccgggcgtggtggtgggcgcgagtaatccaacgactggggaggctgaggcaagagaatcacttgaaccggggaggcagaggtttcagtgagccaagaccacaccactacactccagcctgggtgaaaaagtga----ctgtctcaaaCATAAATTAATTAATCAATTAATTGAagaaaccaaacaaggagaaggttggctaccctgaggtcagcaagggcaggatgctgatgccaccaccaggctccatccacataggaaggggttgatgctcctggaaccagcactgggggccaccctatggaagctggggccacggagaaggcacagacatggcaggagaggctcccaaTCCCCATCAGGAACAGGGTGTGTTGACACTGATGTCTGCCTTACTGATGAGTTGATACCTCCTGCCAGAGACTCCTATTTGTTCAAAAGAGATTGATTCAGGCTGCTAAGAGCCTGGATGTGCAGCCTG-------TCCTCTTCCACCCCCACATAGACAGCAGGAAAGAGATTAATGGGAAACAGATACAACAGCCCAAGAGATGAGGCTTTCTTCACAGTGGGAAGGGAGTCAGGGGCTACTGGAGACAGAGGGACAGAGAAGAGGGAGGAAGACAGATGGAGGG
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47764913 1287 + 51301725 GGCTCCTGTCTGGGCTTCTCCTTGTCCCACCTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCACCAGGGTCCCATCACCCAGGACCTGACTGTCTTTGGGGTACAGGGGGATTGAATACAGGG-AAATGGGTGCTGTGATGGGAGGAATAACTGTCCCCAGTTATGGCTACATGGTAATCCGTGGACCCTGTGACTCTTTATGTTATAGGGCAGGGGACTGAAGGGGAAGATGGAGCTCAGGTTGTTG-TGAGTtgaccttgagatggggagatggcCTGGACTGTCCCAGGGGgctcagtgtaatcacaaggcAACAaacaagaggaggaggatgaggagagtGGGGATTAGAGCAGCGTCGT----GGGAGATTCTATCAGCCACTGTGGGctttgaaggaggaggaaggccaCAAGCCAC--AATGGCAGGTGGCCTCTACGGGCTGGAGAAGTCAAGAGAACCGCTCTGCTGAGTATCCAGAGGGAACACAGTTCTGTAGACGCCTTGATTTCAGCCCAGGGAGAACTGGATCCAATTTCTGTCTCcagaagtgcaaggggtcagtgtgttctctcctgctgccatattTGTGATAATTTTCTGCTGCAGCAACAagaaaccaacacaggaacat-gGTCAAGGACAAGTTAGGAAACCAAACaacaatagctgggcatggtggtgggcacgaGTAAACCAACGACTGG-------------ATtcaatctcttgaatccgggag---gaagttgcagtgagccaagaccacaccactacactccagcctgggtgaaaaagtca-actctgtgtcaaaaattaaataattaatcaattaattaaagaaaCCAAACAAGGAGAAGGTTGGCAACCCCGAGATCAGGAAGGGCGGGACGCTGATGCCACCACCAGGCTCCATCCACATAGGGAGGGGTCGATGCTCCTCGAACCAGCACCAGGAGCCACCCTGTGGAAGCTGAGGCCATGGAGAAGGCACAGGCGTGGCAGGAAAGGCTCCCAATCCCCACCAGGAACAGGGAGTGTGGACACTGGTGCCTGCCTTACTGATCAGTTCATTCCTCCTGCCAGGGACTCCAGTTTGTCCAAAAGAGATTGAACCAGGCTGCTAAGAACCGGGACATGGAGCCTGCCGTAGTTCCTCTTCCAGCCCCACATAGACAGCAGGAAAGAGATGAGTGGGAAACAGATACAGCAGCCTAAGAGATGAGGCTG--AGCCCAGTGGGAAGGGCGTCCGAGGCTACTAGAGACAGAAGgacagagaagagggagggacaCAGATGGAGGG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47482775 1281 + 50890351 GGCTCCTGTCTGGGCTTCTCCTTGTCCCAACTCCTGAATCCCAGAGCTTCTGCTGGGGGTGTCCGTCAGGGTCCCATCACCCAGGACCTGACTGTCTTTGGGGTAAAGGGGGATTTAATACAGGG-AAATGGGTGCtgtgattagaagaataactgtccccaa-tatggttacattctaatccctggagcctgtgactctttatgctatagggcaggggactgaaggggaagagggagctcaggttgttgatgagttgaccttgagatggggagacggcctggactgtcccactgggctcagtggaatcacaaggcaccaaacga---gaggaggatgacaagagtggggattagagcagcgtcgt----gggagagtccatcagccactgtgggctttgaaggtggaggaa-gccacgagccac--aatgaaaggtggcctctacgggctggagaagtcaagagaattgctccgctgagtctccagagggaacacagttctgtagacgccttgattttagcccagggagaactggatccaatttctgcctctaaaagtggaaggggtcactgtattctctcctggcaccatgtttctgataattttctgccacagcaacaggaaaccaagacaGGAACAT-GGTCAAGGACAAGTtaagaaacca---aacgatagccgggcatggtggtgggcacgagtaaaccaatgactgg-------------attcaatcgcttgaatccgggaggcagaaattgcagtgagccaagaccacaccactatactccagcctgggtgaaaaagtgacactctgtctcaaaaaTCaattaattaatcaatgaattaaagaaaccaaacaaggagaaggttggcaaccccgagatcaggaagggctagacgttgatgccaccaccaggctccatccacatagggaggggtcgatgctcctagaaccagcaccaggagccaccctgtggaagctgaggccatggagAAGGCACAGGCATGGCAGGAGAGGCTCCCAATCCCCACCAGGAACAGGGAGTGTGGACACTGGTGCCTGCCTTACTGATCAGTCCATACCTCCTGCCAGGGACTCTAGTTTGTCCAAAAGAGATTGAACCAGGCTGCTAAGAGCCTGGAAATGCAGCCTGCCGTGGTTCCTCTTCCAGCCCCACACAGACAGCAGGAAACAGATTAGTGGGAAACAGATACAACAGCCTAAGAGATGAGGCTG--AGCCCAGTGGGAAGGGCATCCGAGGCTACTAGAGACAGACGGACA---AAGAGGGAGGGACACAGATGAAGGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45770407 1011 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457    0 -    21488 I
e macFas5.chr19                   55639269    3 + 59248254 I
e rheMac3.chr19                   60526244    0 + 64156825 C

a score=16387.000000
s hg38.chr19_GL949751v2_alt         772178 20 +  1002683 ACCTGCACCAGGGGATATGG
s panTro4.chr19                   59769991 20 + 63644993 ACCTGCACCAGGGGATATGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56688517 20 + 60714840 ACCTGCACCAGGGGATATGG
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639272 20 + 59248254 ACCTGCAACAGGGGTTATGG
i macFas5.chr19                   I 3 C 0
s papAnu2.chr19                   47766200 16 + 51301725 ACCTacacaaggggat----
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47484056 16 + 50890351 AACTGCACCAGGGGAT----
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45770407 1011 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=164711.000000
s hg38.chr19_GL949751v2_alt         772198 142 +  1002683 GCACAG-AAAAGACACGgagacacagagagggaggagagagacagaCC------TCTGGGAGGGGAACCCTCACTCATTCCAGGTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCACAACTTCTCTTTCTAGGAAACCA
s panTro4.chr19                   59770011 141 + 63644993 GCACAG-AAAAGACATGGAGATGCAGAGAGGGAGGAGAGAGACAGACA-------CGGGGAGGGGAACCCTCACTCATTCCAGGTGCCATGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCACAACTTCTCTTTCTAGGAAACCA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56688537 142 + 60714840 GCACAG-AAAAGACACGGAGATGCAGAGAGGGAGGAGAGAGACAGACG------CCGGGGAGGGGAACCCTCACTCATTCCGGGTGCCGTGGATGGGATGATAAAGAGAGATGCCTTCTAAACTCACAACTTCACTTTCTAGGAAACCA
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639292 142 + 59248254 GCACAGAAAAGAACACGGAGACACAGAGGAGGAGGAGAGAGACAGACC-------CGGGGAGGGGAAGCCTCACTGATTCCAGGTCCCATGGATGGGATGACAAAGAGAGACGCCTTCTAAACTCACAACCTCTCTTTCTAGGAGTCCA
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47766216 136 + 51301725 -------aaaagacagggagacacagagagggagtacagagacagaca------gcggggaggggAACCCTCACTCGTTCCAGGTGCCATGGATATGATGACAAAGGGAGACGCCTTCTAAACTCACAACCTCTCTTTCTAGGAGTCCA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47484072 136 + 50890351 -------AAAagacagggagacacagagagggaggagagagacagaga------gCCGGGAGGGGAACCCTCACTCATTCCAGGTGCCATGGATATGATGACAAAGGGAGACGTCTTCTAAACTCACAACTTCTCTTTCTAGGAGTCCA
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                    3387407 140 - 49145316 GCAGAG-AGAACACAC----ACACAGACAGGAAGGTCGTGGACGGGCTTTGGTGGTGATGAGGGAGAGCTTCACCC---TGAGGTCCCAGGTGAGGGGTGAGGAAG-GAGACCCCTGTGAATTCCTCTGTCTTTGCTCCCAGGTGCGTT
i calJac3.chr22                   n 1011 n 1011
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=159438.000000
s hg38.chr19_GL949751v2_alt         772340 115 +  1002683 CAGAAAACCTTCCCTCCTGGCCCACCCAGGGCCCCTGCTGAAATCAGGAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAGCACTTCTTTCTGCACAGAGAGGGG
s panTro4.chr19                   59770152 115 + 63644993 CAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCCTGGTGAGATCAGGAGAGACAGTCATCCTGCAATGTTGGTCAGATGTCATGTTTGAGCACTTCTTTCTGCACAGAGAGGGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56688679 115 + 60714840 CAGAAAACCTTCCCTCCTGGCCCACCCAGGTCCCGTGGTGAAATCAGGAGAGAGAGTCATCCTACAATGTTGGTCAGATATAATGTTTGAGCACTTCTTTCTGCAAACAGAGGAG
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639434 115 + 59248254 CAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCGCTGGTGAAATCAGGAGAGACGGTCGTCCTGCAATGTTGGTCAGATACCGTGTTTGAGCACTTCTTTCTGCACAGAGAGGGG
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47766352 115 + 51301725 CAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGGAGAGACGGTCACCCTACAATGTTCCTCAGATACCGTGTTTGAGCACTTCTTTCTGCACAGTGAGGTG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47484208 115 + 50890351 CAGAAAACCTTCCCTCCTGGCCCTCCCAGGTCCCCTGGTGAAATCAGGAGAGACGGTCACCCTACAATGTTCGTCAGATATCGTGTTTGAGCACTTCTTTCTGCACAGTGAGGTG
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771418 115 + 49145316 CACAAAACCTTCCATCTCAGCCCACCCAAGCTCCCTGGTGGCTGCGGGAGTTAGGGTGACCGTGAGCTGTCACTCGGAGCTGGCATTTGATGAGTTTATCTTATACAAAGATGGG
i calJac3.chr22                   I 1011 I 56
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=48154.000000
s hg38.chr19_GL949751v2_alt         772455 50 +  1002683 ATCTCTGAGGACCCCTCACGCCTCGTTGGACAGATCCATGATGGGGTCTC
s panTro4.chr19                   59770267 50 + 63644993 ATCTCTCAGGACCCCTCACGCCTCGTTGGACAGATCCATGATGGGGTCTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56688794 50 + 60714840 ATCTCTAAGGACCCCTTATGCCTCGTTGGACAGATCCATGATGGGGTCTC
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639549 49 + 59248254 ATCTCTGAGGA-CCCCTATGCCTCGTTGGAGAGCTCCATGATGGGGGCTC
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47766467 50 + 51301725 AACTTTGAGAAGCCCCTGCACCTTGTTGGAGAGCTCCATGGTGGAGGTTC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47484323 50 + 50890351 AACTTTGAGAAGCCCTTGCACCTTGTTGGAGAGCTCCATGGTGGGGGTTC
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771533 56 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=222560.000000
s hg38.chr19_GL949751v2_alt         772505 153 +  1002683 CAAGGCCAACTTCTCCATCGGTCCCTTGATGCCTGTCCTTGCAGGAACCTACAGATGTTATGGTTCTGTTCCTCACTCCCCCTATCAGTTGTCAGCTCCCAGTGACCCCCTGGACATCGTGATCACAGGTGAGAGTGTCCAGA-CATTCTTCTC
s panTro4.chr19                   59770317 153 + 63644993 CAAGGCCAATTTCTCCATCGGTCCCATGATGCTTGCCCTTGCAGGGACCTACAGATGCTACGGTTCTGTTACTCACACCCCCTATCAGTTGTCAGCTCCCAGTGATCCCCTGGACATCATGGTCACAGGTGAGGGTGTCTAGA-CATTGTTCTC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56688844 153 + 60714840 CAAGGCCAACTTCTCCATCGGTCCCATGACACCTGCCCTTGCAGGGACCTACAGATGCTACGGTTCTATTCCTCATTCCCCCTATGAGTGGTCAGCTTCCAGTGACCCCCTGGACATCGTGATCACAGGTGAGAGTGTCCAGA-CATTCTTCTC
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639598 153 + 59248254 CAAGGCCAACATCTCCATGGGTCCCATGACGCCTGCCCTTGCAGGGACCTACCAATGCTATGGTTCTTTTACTCACTCCCCCTATGAATGGTCAGTCCCCAGTGACCCCCTGGACATTGTGATCACAGGTGAGAGTGTCCAGA-CATTCTTCTC
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47766517 153 + 51301725 CCAGGCCAACTACTCCATCAATTCCATGACGTCTGCCCTTTCAGGGACCTACAGATGCTACGGTTCTGTCACTCACTCCCCCTATGTGTTGTCAGCTCCCAGTGACCCCCTGGACATGGTGATCACAGGTGAGAGTGTCCGGa-cattcttctc
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47484373 153 + 50890351 CCAGGCCAACTATTCCATCAATTCCACGACGTCTGACCTTGCAGGGACCTACAGATGCTACGGTTCTGTCACTCAATCCCACTATGTGTTGTCAGCTCCCAGTGACCCCCTGGACATCGTGATCACAGGTGAGAGTGTCCGGA-CATTCTTCTC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45771589 154 + 49145316 CAAGGCTGTCTTTTGCCTGGGTCCTGTCACGCCGGCCCAGGCAGGAGCCTACAGATGCTGTGGTTCTTTCAGTCACTCCCGCTATGAGTGCTCGGCTCCCAGCGACCCCCTGGAGATTGTGATCACAGGTGAGTGTGGCTGGACCATCCTGCTC
i calJac3.chr22                   I 56 I 617
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=726623.000000
s hg38.chr19_GL949751v2_alt         772658 607 +  1002683 ATTGTCATTGGGACACAGAGTGAATGATCCAGGACTTGGAACCCCCAGGTGGTCATGAGGAAGATAAGCGTGGGATTCTTATGGAGAGAGACTGACTCGGTGAGGTCTGTACCAACAGAGACAGGGAAACAGGAGACATAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACGGGGAAGTAGAAAAGAGAGAAAGAGGTAAAGGAGACACTCAGACAGACAGACATGTGCCAGAGAGAAGTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTGTCTCCACAAAGTG-CT-TCTACGAGGAGAACCCA-----AGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGGCATCTACAGATGCCATGTTTATTCTGACACCTCTGCCTTCCATGCAGTGGAG-CCATAATTATCCCAGGATATCATGGCCCCAGAACACCAACCCCTAAATACTGTGTGTACTTGGTGTCCCCAGACTAGATTCTGAGGCTCATATTCCAAATAATCCTACATATAATAGGATCACTGAGAGACACAGAGATAAATCAGGGACTTC
s panTro4.chr19                   59770470 606 + 63644993 ATTGTCACTGGGACACAGAGTGAATGATCCAGGACTTGGAACCCCCAGGTGGTCATGAGGAAGATAAGTGTGGGATTCTTATGGAAAGAGAGTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACATAAGTACAGAACAGGTGTCATAACAGGGGACAGACACAGGGGCCATACAGGGAGGTAGAAAAGAGAGAAAGAGGTAAAGGAGACACTCAGACAGACAGACATGTCCCAGAGAGAGGTGTCCTTCCATGCTGACTTTGCTCACAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAAAGTG-TT-TCTACCAGAAGAAACCA-----AGGACACCCATATTTCTGACCTGAGTTGGGCCCTGTGGCCTCAGGCCTTGTGCCACCTACAGATGCCGTGTTTATTCTGACACCTCTGCCTTCCATGCAATGGAG-A-GTAATCGTCTCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTCCCCAGACTGGATTCTGAGGCTCACATTCCAAATAATCCCACATATGATAGGATCGCTGAGAGACACAGAGAAAAATCAGGGACACC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56688997 607 + 60714840 ATTGTCACTGGGATACAGAGTGAATGATCCAGGACTTGGAACCCCCAGGTGGTCATGAGGAAGATGAGCGTGGGATTCTTATGGAGAGAGACTGACTTGGTGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACATAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGGAGGTAGAAAACAGAGAAAGAGGTAAAGGAGA----CAGACAGACAGACATGTCCCAGAGAGAGCTGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGAAGTTTCATTTCTGTTTTACCTCCACAGAGTG-TTCTCTACTAGGAGAACCCAAACCCAGGACACCTGTATTTCTGACCTGAGTCGGTCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCTGTGTTTA-TCTGACACCTCTGCCTTCCATGCAATGGAG-A-GTAATCATCCCAGGATATCATGGCCCCAGAACACCAACCCCTGTATGCTGTGTGAACTTGGGGTCCCCAGACTGGATTCTGAGGCTCATATTCCAAATAACCCCACATATGATAGGATTACTGAGAGACACAGAGAGAAATCAGGGACGTC
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55639751 608 + 59248254 ATTGTCACTGGGACACAGAGTGAATGATCCAGGACTTGGAAGCCCCAGGTTGTCATGAGGAAGATGAGTGTGGGATTCTTATGGAGAGAGACTGACTTGGCGAGGTCTGTACCAACAGAGACAGAGAAACAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCACACAGGGAGGTAGAAAAGAGAGAAAGAAGTAAAGGAGACACTCAGACAGACAGACATGTCCCAGAGAGAGGTGCCCTTCCGTGCTGACTTTGTTCAGAGACCTGGCACAGGTTAGAAGCTTCATCTCTGTGTTACCTCCACAGAGTGATC-TCTACCAGGAGAACCCA-----AGAGCACGCTTATTTCTCACCTTAGTTGGGCCCTGGGACCTCAGGCCTTGTGGCACCTACAGATGCCGTGTTGATTCTGACACCTCTGCCTCGTGTTCAGGGGAGCC-GTAACCTTCTCACGATATCATGGCCCCAGAACACCAACCCCTGTGTGCTGTGTGTACTTGGGGTCTCCAGACTGGATTCTGAGGCTCATATTCCAAACAACCACACATATGATAGGATTCCTGACAGACACAGAGAGAAATCAGGGACATT
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47766670 606 + 51301725 attgtcacCGGGACACAGAGTGAATGATCCAGGACTTGGAAGCCCCAGGTGGTCATGAGGAAGATGAGTGTGGGAATCTTATGGAGAGAGACTCACTTGGGGAGGTCTGTAccaacagagacagagaaacagaatacACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAAGgaggtagaaaagagagaaagagttaaagGGGACACCCAGACACACAGACATGTCCCAGAGAGAGGCGTCCTTCCATGCTGACTTTGCTCAGAGACCTGGCACAGGTTAGaagtttcatttctgttttacctCCACAAAGTG-TT-TCTACCAGGAGAACCCA-----AGGACACCCATATTTCTGTCCTGAGTCAGCCCCTGTGGCCTCAGACCTTGTGGCACCTACAGATGCCATGTTTGTTCTGACACCTCTGCCTTCCGTGCAGTGGAG-A-GTCATCGTCCCAGGATATCGTGGCCCCAGAACACCAACCCCTGTATGCTGTGTGTACTTGGGGTCGCCACACTGGATTCTGAGGCTCATATTCCACAGAATCCCACATATGATAGGATTCCTGAGAGACGCAGAGAGAAATCAGGAacatc
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47484526 606 + 50890351 ATTGTCACTGGGACACAGAGTGAATGATCCAGTACCTGGAAGCCCCAGGTTGTCATGAGGAAGATGAGTGTGGGATTCTTATGGAGAGAGACTGACTTGGCGAGGTCTGTACCAACAGAGACAGAGAAATAGGAGACACAAGTACAGACCAGGTGTCATAACAGAGGACAGACACAGGGGCCATACAGGGAGGTAGAAAAGAGAGAAAGAGTTAAAGGGGACACCCAGACAGACAGACATGTCCCAGAGACAGTCGTCCTTCTGTGCTGACTTTGCTCAGAGACTCGGCACAGGTTAGAAACTTCATTTCTGTGTTACCTCCACAAAGCG-TT-TCTACCAGAAGAACCCA-----AGGACACCCATATTTCTGTCCTGAGTCAGCCCCTGTGGCCTCAGGCCTTGTGGCACCTACAGATGCCGTGTTTGTTCTGACACCTCTGCCTTCCGTACAGTGGAG-A-GTCATCGTCCAAGGATATCGTGGCCCCAGAATACCAACCCCTGTATGCTGTGTGTACTTGGGGTTCCCAGACTGGATTCTGAGGCTAATATTCCACAGAACCCCACATATGACAGGATTCCTGAGAGACACAGAGAGAAATCAGGAACATC
i chlSab2.chr6                    C 0 I 315
e calJac3.chr22                   45771743 617 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=77663.000000
s hg38.chr19_GL949751v2_alt         773265 70 +  1002683 AAAAAGCAAAGGCATAAACACACAGAG-AATGAGCCAGAGGAAGGGGATTGAGAGACTCACAGACACACAA
s panTro4.chr19                   59771076 70 + 63644993 AAAAAGCAAAGACATAAACACACACAA-AATGAGCCAGAAGAAGGAGATTAAGAGATTCACAGACACATAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56689604 70 + 60714840 AAAAAGCAAAGGCATAAACACACAGAG-AATGAGCCAGAAGAAGGGGATTGAGAGACTCACAGACATATAa
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55640359 70 + 59248254 AAAAAGCAAAGGCATAAACACACAGAG-AATGAGCCAGAGGAAGGAGACTGACAAGCTCACAGCCACATAA
i macFas5.chr19                   C 0 I 509
s papAnu2.chr19                   47767276 71 + 51301725 agaaagcaaagaaataaacacacacagaaatgagCCAGAGTAAGGGGACTGAGAGACTCACAGAcacataa
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47485447 69 + 50890351 aaaaagcaaaGACATAAACACACAGAGAAATGAGCCAGAGGAAGGGGACTGAGA--CTCACAGACACATAA
i chlSab2.chr6                    I 315 C 0
e calJac3.chr22                   45771743 617 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e rheMac3.chr19                   60526244  0 + 64156825 C

a score=381390.000000
s hg38.chr19_GL949751v2_alt         773335 399 +  1002683 AAAGAAAGAAAAGAGGGCAGAGGAGTGGAGAGAATGCTGGAAGGGAGGAGAGAAAAGCCCCAAAATCAGAACCCTGAGGGAG--GGGCACAAAGACAGAGAAAGATAAAGATGT-GGGGATGGATTGCAGAGATTCCAAATAGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGagagagacagatgatagatggatagatagatatagatagatgataaataggtagatgatagataatggataggttatagatacatagatgatgattga----tagatgatacatagagatgatgat-----------------------------gat-gat-gatgat-gaagatagatagatagaagacacatatataaatatatagatacatagatgatacatagagactgacaggcagacagagaggtaat
s panTro4.chr19                   59771146 381 + 63644993 AAAGAAAGAAAAGAGGGCAGAG---TGGAGAGAATGATGGAAGGGAGGAGAGAAAAGCCCCAAAATCAGAACCCTGAGGGAG--GGACACAAAGACAGAGAAAGATAAAGATGT-GGGGATGGATTGCAGAGATTCCAAATAGAACTAGAGAGACCGAGAGGCAGAGAAAGACAAGGAGATGGagagagagagatgatagatggatagatagatgtagatagatgataaataggtagatgatagataatggattggttatagatacatagatgatgactga----tagatgatacatagagatgatgat-----------------------------gat-gac-gatgat-gatgatagacacataga-------tatatacagagat-gatacataaat-------agaGACAGAGAGGCAGACAGAGAGGTAAT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56689674 389 + 60714840 caggaaagaaaagagggcagaggaatggagagaatgatggaagggaggagagaaaagctccaaaatcagaaccctgagggag--gggcacaaagacagagaaagataaagatgt-ggggatggatTGCAGAGATTCCAAATagaatgagagagactgagaggcagagaaagacaaggagatggagagagacagaTgatatatggatagatagatatagatagatgataaataggtagatgatagataatggataggttatagatacatggatgatgattga----tagatcatacatagagatgatgat-----------------------------gat-gat-gaagatagaagacacacagataaa---tatatagatacatagat-gatacatagat-------agagacagagaggcagacagataggtaat
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55640938 361 + 59248254 aGAGAGAGAAAAGAGGGCAGAGAAGTGGAGAGAATGATGGAAGGAAGCTGAGAAAAGCCCTAAAATCAGAGTCCTGAGGGAG--AGGCACAAGGAGAGAGAAAGATGGAGATGTGGGGGATGAATTGCAGATATTTCAAAGACAACGAGACAGACTGAGAGGCAGAGAAAGACAAGGAGATGGagacagagagat-gcagatgg----------atagatagatgataaataggtagatgatagataatagataggttatagatacatacatgatgactgattggtagatgatacatagagatgataat-----------------------------gat-gat-gataa--atagacaaagagataga---tac------------------------atgatacatagagatagagaggcagacatgtaac----
i macFas5.chr19                   I 509 I 2
s papAnu2.chr19                   47767347 422 + 51301725 agagagagaaaaaagggcagaggagtggagagaatgatggaagggaggagagaaaagctCCAAAATCAGAACCCTGAGGGCG--GGGCACAAAGACAGAGATAGATAAAGATGT-GAGGATGGATTGCagagattccaaatagaactagagagactgagaggcagagaaagacaaggagatggagagagacagatggtagatggatagatagatatagatagatgataaataggtagatgatagataatggatgggttatacatacatagatggtgactgataggtagatgatacatagagatgatgatagatagatagatagatagatagatagatagatagatagatag--atagatagacagataga---cacatagatagata-acagatacgtagatgatacatagagacagagagggagacagat-------
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47485516 407 + 50890351 ----AGAGAAAAGAGGGCAGGGAAGTGGAGAGAATGATGGAAGGGAGCAGAGAAAAGCTCCAAAATCAGAACCCTGAGGGCGCAGGGCACAAAGACAGAGATAGATAAAGCTGT-GGGGATGGATTGCAGAGATTCCAAATAGAACTAGAGAGACTGAGAGGCAGAGAAAGACAAGGAGATGGagagagacagatggtagatggatagatagatagagatagatgataaataggtagatgatagataatggatgggttatagatacatagatggcaattgatagatagatgatacatagagatgattat---------------------gactgatagatagatagatca--atagatagatagataga---cacatggataggtacatagatacgtagatgacacatagagacagagaggcagacagatagggaat
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771743 617 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e rheMac3.chr19                   60526244   0 + 64156825 C

a score=635836.000000
s hg38.chr19_GL949751v2_alt         773734 456 +  1002683 agagagag---agaga--gatgatacatagatacagata---atacatagatgattgatggataga----cagatagacaattgataga------------taaatgatac--atagatatagatgac----ag----ataatttgtagatagacacaaaata---------------------------gata------------gatagat----------------a-atagat--------------------------agaAATATGCAGAAAGTTATGAACAAGACAGAAAGTGAGAGACTCAGAATTATAGAAAAAGGAAGATCAAGTCAACCAATCCAAGGAGAGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAGCATACCCAGGGGTGGGGAAGTGAGGTCagagacctagagagacagagaaggcggaaggaggaaatagacatgaagagagtt-------------------------------------------------------------------ggggtggagggtgag----agagagagagag--CATTAGGTCA-TAGAGCAGGGG-AGTGAGTTCTCAGCTCAGGTATGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
s panTro4.chr19                   59771527 474 + 63644993 AGagagag---agagacagatgatacata--tatagata---ata----gatgattgatggataga----cagacagacaattgatagaga----gatagataagtgatac--ataaatatagatgat----ag----ataatttgtagatagacacaaaata---------------------------gataaatagatagatcgatagat----------------a-atagat--------------------------agaAATGTGCAGAAAGTTATGAACAAGACAGAAAGTGAGAGACTCAAAATTAAAGAAAAAGGAAGATCAAGTCAACCAATCCAAGGAGGGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACATACCTCAGGGTGGGGAAGTGAGGTCATAGACCTagagagacagaaaaggtagaaggaggaaatagatatgaagagagat-------------------------------------------------------------------ggggtggagggtgag----agagagagagagagCATTAGGCCA-TAGAGCAGGGG-AGTGAGTTCTCAGCTCAGGTGTGAGGGGAGTTGTGACAAGGAAGAACCTCCCTGAGG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56690063 494 + 60714840 agagagag---agata--gatgatacagagatgtagata---acacatagatgattgatggatgga----cagatagacaattgatagaga----gatagataaatgatacatatatatatagatgacagatag----ataatttgtagatagacacaaaata---------------------------gatagatagatagatagatagatagatagatagagagaca-atagat--------------------------agaAACATGCAGAAATTTATGAACAAGACAAAAAGTGAGAGACTCAGAATTGTAGAAAAAGGAAGATCAAGTCAACCAACCCAAGGAGGGTCAGAGAGAATAAAACAATCCAAAAAGGGAAAACATACCTAGGGGTGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGAGAAGGTGGAAGGAGGAAATAGACATGAAGAGAGAT-------------------------------------------------------------------GGGGTGGAGGGTGAG----AGAGAGAG------CATTAGGTCA-TAGAGCAGGGG-AGTGAGTTTTCAGTTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60526244 478 + 64156825 agagagag---agata--gatgatacacagatatagata---acacataggtgattgatggatagagagctagatagacaattgatagatacagagatagatagatgatac--ataaatatagatgatagatag----ataatttgtagatagacaccaaata-------------------------------gataaatagatcgatagat----------------a-atagac--------------------------agaAATATGCAGAAAGTTGTGAACAGGACAGAAAGTGAGAAACTCAGAATTAAAGAAAAAGGAAGATCAAGTCAA-CAACCCAAGGAGGGTCAGAAAGAATAAAACCATGCAAAAAGGGGAAACATTCCTCGGGGTGGGGAAGTGAGGTCAGAGACCTAGAGAGACAGACAAGGCAGAAGGAGAAAATAGACATGAAGAGAGAAG------------------------------------------------------------------GGGCTGGAGGGT--G----AGAGAGAG------CATTAGGCCA-TAGAGCGGGGG-AGTGAGTTCTCAGCTCAGATGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i rheMac3.chr19                   C 0 C 0
s macFas5.chr19                   55641301 591 + 59248254 aaatagag---agaga--gaggatacatagatatagata-------atagctgattgatggataca----tagatagttaatt------------gatagagagatgatac--atatatatagatgatagatagataaataatttgtagatacacaccaaatagttaaatagacgatagatagatagatagatagatagatagatagatagat----------------agatagacagatagataacggatacatagataatagaAATATGCAGAAAATTTTGAACAAGACAGAAAGTGAGAGACTCAGAATTAAAGAAAAAGGAAGATCAAGTCAACCAATCCAAGGAGGGTCAGAGAGAATAAAATGGTACAAAGAAAAAAAACATAGCTAGGGATGGGGAAGTGAGGTCAGAGACCTAGGGACATGGAGAAGGTGGAAGGAGGAAATAGACATGAagggagacggagtgaagggtgagagacagagagagagagagaaggtgaaaggagaaaatagacatgaagagacatggggtggagggtaag----aaagagag------CATTAGGTCACTAGAGCAGGTGCAGGGAGTTCTCAGCTCAGGTGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i macFas5.chr19                   I 2 C 0
s papAnu2.chr19                   47767769 484 + 51301725 agagagggaacagaca--gatgatacatagatatagatatagata-atagatagatggtggataga----tagagagacagacgatagaga----gacagataaatgacac--agagatacagattacagatag----ataattgatagactgacaggtagta---------------------------gatagatagatcgatcgatagat----------------a-atggat--------------------------agaAATGTGCAGAAGGTTATGAACAAGACAGAAAGTGAGAAActcagaattaaagaaaaaggaagatcaaGTCAA-CAATCCAAGGAGggtcagagagaagaaaacaataaaaaaagggaaaacacacCTCAGGCTGGGGAAGTGAGGTCAGAGAcctagagagacagagaaggtggaaggaggaaacagacatgaagagagac-------------------------------------------------------------------ggggtggagggtgagagacagagagag------cattaggtca-tagatcagagg-agtgagTTCTCAGCTCAGATGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTGAGG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47485923 465 + 50890351 -----------agaca--gatgatacacagatatagata-------atagatagatggtggataga----tagagagacagacaattgatagagagatagatacatgatac--atagatatagattacagatag----ataattgatagattgacaggtagta---------------------------gatagatcgatcaatcgatagat----------------a-atagat--------------------------agaAATGTGCAGAAGGTTATGAACAAAACAGAAAGTGAGAAACTCAGAATTAAAGAAAAAGGAAGATCAAGTCAA-CAATCCAAGGAGGGTCAGAGAGAAGAAAACAATACAAAAAGGGAAAACACACCTCGGGCTGGGGAAGTGAGGTCAGAGACCTAGAGACACagagaaagtggaaggaggaaacagacaagaagagagaC-------------------------------------------------------------------GGGGTGGAGGGT--G----ACAGAGAG------CATTAGACCA-TAGAGCAGGGC-AGGGAGTTCTCAGCTCAGATGTGAGGGGAGCTGTGACAAGGAAGAACCTCCCTAAGG
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45771743 617 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I

a score=599661.000000
s hg38.chr19_GL949751v2_alt         774190 325 +  1002683 AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGGTTCAGGCAGGAGAGAACGTGACCTTGTCCTGTAGCTCCTGGAGCTCCTATGACATCTACCATCTGTCCAGGGGAGGGGAGGCCCATGAACGTAGGCTCCGTGCAGTGCCCAAGGTCAACAGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGCCA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCGTGCCCTGCCCTGCGTGTGGTCAAACTCAAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAA
s panTro4.chr19                   59772001 325 + 63644993 AAACTGCGTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACAGTTCAGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCCGGAGATCCTATGACATGTACCATCTATTCAGGGAGGGGGAGGCCCATGAATGTAGGCTCCGTGCAGTGCGCAAGGTCAACAGAACATTCCAGGCAGACTTTCCTCTGGGCCCTGCCA------CCCACAGAGGGACCTACAGATGCTTCGGCTCTTTCCGTCACTCTCCCTACGAGTGGTCAGACCCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGAAAA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56690557 325 + 60714840 AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCTGGCCCCACAGTCCAGGCAGGAGAGAATGTGACCTTGTCCTGCAGCTCCCGGCGCTCCTTTTACATGTACCATCTATCCAGGGAGGGGGAGGCCCGTGAATATAGGCTCCCTGCAGTGCCCAAGGTCAACGGAACATTCCAGGCCGACTTTCCTCTGGGCCCTGTCA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTTCCCTGAACCTCCCTACATGTGGTCAAACTCGAGTGACCCACTGCTTGTTTCTGTCACAGGTGAGGAAA
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60526722 325 + 64156825 AAACTGCCTCTTCTCCTTCCAGGTGTATATGAGAACCCTTCTCTCTCAGCCCAGCCGGGCCCCACAGTGCAGGCAGGACAGAACGTGACCTTGTCCTGCACCTCCCAGACCTCGTTTGACATGTACCATCTATCCAGGGAGGGGGAGGCCAATGAACTTAGGCTCCCTGCAGTGTCAAGTGTCAATGGAACTTTCCAGGCCAACTTCCTTCTGGGCCCTGCCA------CCCACGGAGGGACCTACAGATGCTTCGGCTCTTACCGTGACTCTCCCTATGAGTGGTCAGACCCGAGTGACCCACTGTCCGTTTCCGTTACAGGTGAGGAAA
i rheMac3.chr19                   C 0 C 0
s macFas5.chr19                   55641892 325 + 59248254 AAACTGCCTCTTCTCCTTCCGGGTCTATACAGGAAATGTTCTCTCTCAGCCCAGCCGGGCCCCACTGTTCATGCAGAAGAGAACATGACCTGATCCTGCAGCTCCCGGAGCTCCTTTGACATGTACCATCTATCCAGGGAAGGGGAGGCCCATGAACTGAGGCTCCCTGCAGTGCCGAGGGTCCATGGAACATTCCAGGCCGACTTCCCTCTGGAGCCTGCCA------CCCACGGAGGGACGTTCAGATGCTTTGGCTCTTTCCGTGACTCTCCCTATGAGTGGTCAGACCCGAGTGACCCACTGCCCATTTCTGTCACAGGTGAGGAAA
i macFas5.chr19                   C 0 I 7992
s papAnu2.chr19                   47768253 325 + 51301725 AAACTGCCTCTTCTCCTTCCAGGTCTATATGAGAAACCTTCTCTCTCAGCCCAGCCAGGCCCCATGGTTCAGGCAGGAGAGAACGTGACCTTGTCCTGCAGCTCCCAGAACTTGTTTGACGTGTACCATCTATCCACGGAGGGGGAGGCTCGTGAACTTAGTCTCTCTGCAGTGCCAAGCGTCAATGGAACATTGCAGGCCACCTTCCCTCTGGGCCCTGCCA------CCCATGGAGGAACCTACAGATGCTTTGGTTCTTTCCGTACCACACCCTACAAGTGGTCAAACTCGAGTGACCCTCTGGCTGTTTCggtcacaggtgaggaaa
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47486388 325 + 50890351 AAACTGCCTCTTCTCCTTCCAGGTATATATAAGAAACCTTCTATCTCAGCCCAGCCAGGCCCCACGGTGCAAGCAGGAGAGAACCTAACCTTGTCCTGCAGCTCCCAACGCCGCTTTGACATGTACCATCTATCCAGGGAGGGGGAGACCCATGAACTTAGGCTTCCTGCAGTGCCAAACATCAATGGAACATTCCAGGCCAACTTCCCTCTGGGCCCTGTGA------CCCACGGAGGAACCTACAGATGCTTCGGTTCTTTCCATACCACACCCTACCAGTGGTCAGTCCCAAGTGACCCACTGCATGTTTCTGTCACAGGTGAGGAAA
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772360 329 + 49145316 AATCAGCCTCTTTTCCTCCCAGGAAAACACAAAAAGCCTTCTCTCTCCACCCAGGAGGACCCCAGGATGGGGAGTGGAGAGAACGTGACGTTATTCTGCATCTCTGAAATCTCATTTGACCGGTACCATCTGTGGAGAGAGGGGGCTCCTTATGGCCAGTGGCTCAGTGGAGGTCAGGGACACAGGGGAGCATTCCAGGCCAACTTTTCTGTGGGCCTCGCAACGCCAGCCCATGGAGGGACCTATAGATGCTACGGTTCTTTCAATGCCTCCCCCTATGAGTGGTCGGCCCCCAGTGAGCCCCTGCACCTTTCTGTCACAGGTGAGGA--
i calJac3.chr22                   I 617 C 0
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I

a score=49234.000000
s hg38.chr19_GL949751v2_alt         774515 39 +  1002683 ACCCGTGTCTGTCCCATGTCTTAT---------GATCCTAGAGCCATA
s panTro4.chr19                   59772326 39 + 63644993 GCCCATATCTCTCTCATGTGCTAT---------GATCCTAAATCCTTA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56690882 39 + 60714840 ACCTGTGTCTGTCCCATGTCTTAT---------GATCCTAGAGCCATA
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60527047 39 + 64156825 GCCCATGTCTGTCCCATGTCTTAT---------GACCCTAGAGccata
i rheMac3.chr19                   C 0 I 159
s papAnu2.chr19                   47768578 39 + 51301725 ccccATGCCTGTCCCATGTCTTAT---------GATCCCAGAGCCATA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47486713 39 + 50890351 CTCCATGCCTGTCCCATGTCTTAT---------GATCCCAGAGCCATA
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772689 48 + 49145316 GCCCACACCTGCCACCTGTCCTGTTGTCCACTAAGTCCCAGAGCCATA
i calJac3.chr22                   C 0 C 0
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I

a score=269185.000000
s hg38.chr19_GL949751v2_alt         774554 309 +  1002683 GCTGAGGAGCTTCCTGCCGA------------------------TGATGGGGAGAAGCATGGACAGATGCAGAGA-GAACACGAAGACTGGGTGTGAGGGGGGGGTCAGGGTGCAGGATGGCAGACAGGGCACCTCCAAACCCTCTTGCATGGCCTGCATGGAGGCCCATGGTCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCGGTCAGGACAGACCCAGA-GAAGGGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAGCCCATCCTGGCCTCTCACCCACACAGAGAGATGTC
s panTro4.chr19                   59772365 309 + 63644993 GCTAAGGAGCTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGATGCAGAGA-GAAGACGCAGCATGGGTGTGAGGGCGGGGTCAGGGTACAGGATGGCAGACAGGGCACCTCCAAACCCTCCTTCATGGCCTGCATGGAGGCCTCCGATCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCAGTCAGGACAGACCCAAA-GAAGGGGAGACTGGGCTTAGTTTGGGGAGATCAGAGCTTCCCTCAGCCCCTCAATCTTACCCA-TTTCCCAGAAGCCCATCATGGCCTCTCACCCACACAGAGAGATATC
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56690921 307 + 60714840 GCTGAGGAACTTCCTGCTGA------------------------TGATGGATAGAAGGATAAACAGATGCAGAGA-GAACACGAAGCCTGGGTGTGAGGGCGGGGTCAGGGCGCACGATGGCAGACAGGGCAACTCCAAACCCTCCTGCACGGCCTGCATGGAGGCCCATGGTCAGGGCTCCAGGCACCCAGGCAGATGGAGAAAGCAGTCAGGACAGACCCAGA-GGAGGGGAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAGCCCCTCCTGGACTCTCATCCACAC--AGAGATGTC
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47768617 304 + 51301725 GCTGAGGAACTTGCTGCTGA------------------------TGATAGAAAGAAGCACGGACAGGTTCAGAGA-GAAGACCAAGCTTCGGTGTGAGGGCGGGATCAGGATGCAGCATGGC--AGAGGGCACCTCCAAACCCTCCTGCATGGCCTGCGTGGTGGTCCGCGGTCAGCGCTGCAGGCACCCaggcagatggagaaactggTCAGGACAGACCCAGA-GGA-GGCAGACTGGGCTCAGTTTGGGGAGATCAGAGGTTCCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAGCCCATCCTGGCCTCTCACCCACAC--AGACATATC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47486752 306 + 50890351 GCTGAGGAACTTCCTGCTGA------------------------TGATGGAGAGAAGCATGGACAGGTTCAGAGA-GAAGACCAAGCTTCGGTGTGAGGGCGGGATCAGGACGCAGGATGGCAGAGAGGGCACCTCCAAACCCTCCTGCATGGCCTGCGTGGTGGTCCGCAGTCAGGGCTCCAGGCACCCAGGCAGATGGAGAAACTGGTCAGGACAGACCCAGA-GGA-GGGAGACTGGGCTCAGTTTGGGGAGATCAGAGATTCCCTCAGCCCCTCAACCTTACCCA-TTTCCCAGAAACCCATCCCGGCCTCTCACCCACAC--AGACATATC
i chlSab2.chr6                    C 0 C 0
s calJac3.chr22                   45772737 293 + 49145316 CCAGAGGGGCATCCCACTGGGCACACAGGGGCATTAGGTATTCTGGACAAAATGAAGCAGTGAAAAATACAGACAGGGATGAACAGGCTGAGTGGGATGGGGCTGTCAGGGTGCAGGGC-ATAGACAGGGCAGCTCTGCGCCCTCC------------------GCCC----------CTCC-----------TACATGAAGAAAGAGGTCAGGGCAAACACAGGTGGAGGTGAGGCCAGATGGAGTTTGTTGAGATCAGAGGTTGCCTCAGCCCCTCGCCCTTTTCCATTTTCTCCGAAGCCCCTCCTGACCCCTCA-CCACAG--AGAGATTTC
i calJac3.chr22                   C 0 I 96928
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=75404.000000
s hg38.chr19_GL949751v2_alt         774863 96 +  1002683 ATCACCAGCAACCCCTACACTCTTTTCTTTTCATTTTCAAAAATATTTATTGAGGTTAAATGTAACTATATAATTTACCAACTTTACCATTTTTAA
s panTro4.chr19                   59772674 96 + 63644993 ATCACCAGCAACCCCTACACCCTTTTCTTTTCATTTTCAAAAATAtttattgaggttaaatgtaactatataatttaccacctttaccatttttaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56691228 96 + 60714840 ATCACCAGCAACCCCTACACCCTTTTCTTTTCATTTGAAAAAATATTTATTGAAGTTAAATATACCTATATAATTTACCAACTTTACCATTTTTAA
i ponAbe2.chr19                   C 0 T 96752
s papAnu2.chr19                   47768921 96 + 51301725 ATCACCAGCAATCCTTAcacccttttcttttcatttgaaaaaatatttgttaaggtTAAATATACCTATAAAATTGACCATCTTTACCGTTTTTAA
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47487058 96 + 50890351 ATCACCAGCAACCCTTACACCCTTTGCTTTTCATTTGAAAAAATATTTGttgaggttaaaaatacctataaaattgaccacctttaccatttttaa
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=26293.000000
s hg38.chr19_GL949751v2_alt         774959 34 +  1002683 AAGTAAAATCTAGTGGTCATAAATACCTTTATAT
s panTro4.chr19                   59772770 34 + 63644993 aagtaaaatctagtggtcataaatacctttataT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56594572 34 + 60714840 aagtaaaatctagtggtcataaatacctttataT
i ponAbe2.chr19                   T 96752 C 0
s papAnu2.chr19                   47769017 34 + 51301725 GTGTAAAGACTAGTGGtcataaatacattcatat
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47487154 34 + 50890351 gtgtaaagtctagtggtcataaatacatttatat
i chlSab2.chr6                    C 0 T 60271
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=2566.000000
s hg38.chr19_GL949751v2_alt         774993 4 +  1002683 gctg
s panTro4.chr19                   59772804 4 + 63644993 gctg
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56594606 4 + 60714840 gctg
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47769051 4 + 51301725 tctg
i papAnu2.chr19                   C 0 T 21218
s chlSab2.chr6                    47426917 4 + 50890351 gccg
i chlSab2.chr6                    T 60271 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=227052.000000
s hg38.chr19_GL949751v2_alt         774997 305 +  1002683 ggtgtggtggttcacggttgtaatcttggcgctttgagaggccaagaaaggtggatcatttaagatcagggactcgagatcagcctggccaacatgcgggaaattcatctttactaaacagac-aagaaaaattagccaagcatgccggcatgcacctgtagtcctagctacttgggaggctgaggcaggagaagcacttaaagccaggaggcagaggttgcactgagccgagatcatgccactgcactgcagcctgggagacagagagagactctgtttctaa----ataaataaaTACATCTATATTC
s panTro4.chr19                   59772808 305 + 63644993 ggtgtggtggttcacggttgtaatctccgcactttgagaggccaaggaaggtggatcatttaagatcaggaactcgagatcaccctggccaacatgtgggaaattcatctttactaaacagac-aagaaaaattagccaagcatgccggcatgcacctgtagtcctagctacttgggaggctgaggcaggagaagcacttaaacccaggaggcagaggttgcactgagccgagatcatgccactgcactgcagcctgggagacagagagagactctgtttctaa----ataaataaaTACATCTATATtc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56594610 305 + 60714840 ggtgcagtggctcatggttttaatcttggcgctttgagaggccaaggaaggcggatcatttaagatcaggggctcaagatcagcctggccaacatgtgggaaattcatctttactaaacagac-aagaaaaattggccaggcatgctggcctgcacctgtagtcctagctacatgggaggttgaggcaggagaagcacttaagcccaggagacagaggttgcactgagccgagatcatgccactgcactgcagcctgggagacagagagagactctgtctctaa----ataaataaaTACATCTATATTC
i ponAbe2.chr19                   C 0 I 42218
s papAnu2.chr19                   47747837 309 + 51301725 ggtgcagtggctcacgcttgtaatctcagcaatttgagaggccaaggcaggtagatcattcaAAATCAGGGgctggagacaagcctggccaacatgggggaaacccatttttactaaaaagatgaaaaaaaattaaccaggcatagtaccacatgcctgtaatcccagctacttgggaggctgaggtaggagaaccgcttaagcccaggaggcagaggttgcagtgagccgagatcatgccactgcactgcagcctggt-gacacacagagactctgtctctaaatagataaataaataaatttatattc
i papAnu2.chr19                   T 21218 C 0
s chlSab2.chr6                    47426921 309 + 50890351 ggtgcagtggctcatgcttgtaatctcagcaatttgagaggccaaggcaggtagatcattcaaaatcaggggctggagacaagcctggccaacatgggggaaacccatctttactaaaaagatgaaaaaaaattaaccaggcatagtgccacgtgcctgtaatcccagctacttgggaggctgaggcagcagaaccgcttaagcccaggaggcagaggttgcagtgagccgagatcatgcctctgcactgcaacctggt-gacacacagagactctgtctctaaatagataaataaataaaTTTGTATTc
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=280163.000000
s hg38.chr19_GL949751v2_alt         775302 359 +  1002683 TTTTTTTTGttaccctccacccttcccttcctggcctctggtatccaccattctattctctaccttcatgagatccaccttttatctcctgcatgtgg-tgagaaatgggaatctttgtaatgacctccagttccatccatgtggctgcaaatgacaggatgttattgtttctatggatgagtagtctccaccgtgtgtgtgtactacagt-tctctatccattcacccactgataggcaggtaggttgactccacatcttggctactgtgaacagtgctggaacagtcatatgagtgcagatatcacttcgatacactgatgtcctttcctttggatataaacccagtagtgaaattgct
s panTro4.chr19                   59773113 360 + 63644993 ttttttttgttaccctccacccttcccttcctggcctctggtatccaccattctattctctaccttcatgagatccaccttttatctcctgcatgtgggtgagaaatgggaatctttgtaatgacctccagttccatccatgtggctgcaaatgacaggatgttattgtttctatggatgagtagtctccaccgtgtgtgtgtaccacagt-tctctatccactcacccactgatgggcaggtaggttgactccacatcttggctactgtgaacagtgctggaacagtcatatgagtgcagatatcacttcaatacactgatgtcctttcctttggatataaacccagtagtgaaattgct
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637133 360 + 60714840 tttttttttttAccctccacccttttcttcctggcctctggtagccaccattctactctctaccttcatgagatccaccttttagctcctgtatatgggggagaaataggaatctttgtaatgacttcgagttccatccatgtggctgcgaatgacaggatgttattctttctatggatgagtagtctccactgtgcgtatgtactacagt-tctctatccattcacccactgatgggcaggtaagttgactccacatcttggctacggtgaacagtgctgcaccaatcatacgagtgcagatatcacttcgatatattgatttcctttcctttggatataaacccagtagtgaaattgct
i ponAbe2.chr19                   I 42218 C 0
s papAnu2.chr19                   47748146 361 + 51301725 tttttttggtTACCCTCCATCCTTTCCTTCCTAACCTCTGGCatccaccattctactctctaccttcatGAGCTTCACATTTTACATCCTGCAGGTTAGTGAGAAATGGCATTCCttgtaatgacctccagttccacccatgtggCTGCAAATGTCAGGATGTTATTGTCTCTCTGGATGAGTAGTCTCCACTGTGTGTATGTACTACATTCTCtctatccattcacccactgatgGGCAGGTAGGTTGACTCCACATCTTGACTACTGTGAATGGTGCTAGAACAgtcatgggagtgcagatgtcaCTTTGATACACTGAAGTCCTTTCCTTTGCGTTTACACCCActagtggaattgct
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47427230 360 + 50890351 ttttttttgttaccctccatcctttccttcctaacctctggcatccaccattctactctctaccttcatgagcttcaccttttatatcctgcaggttagtgagaaatggcaatccttgtaatgacctccagttccacccatgtggttgcaaatgtcaggatgttactgtctctatggatgagtagtctccactgtgtgtatgtactacattctctctatccattcacccactgatggacaggtaggttgactccacatcttggctactgtgaatggtgctagaatagtcatgggagtgcagatgtcactttgataca-tgaagtcctttcctttgcatttacacccactagtggaattgct
i chlSab2.chr6                    C 0 I 60475
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=166756.000000
s hg38.chr19_GL949751v2_alt         775661 469 +  1002683 ggacactatgaaagttctc--tttttttttttt---------------cttttttgagaaagagtttccctcct-tagtccaagctggagtcaaagtggtgcgatcttggctcattgcaacctctgcttcctaggttcaaacgattctcctgactcagcctccctaatagctgtgattacaggtgcacgccaccatgcctgactaattcttgtattttttagcacagacgggatatcccaattttgggcaggctgctctcaaactcctgacctcaagtgaggtgcctgcctcggtttcccaaagtgctgaagttacaggcataagccactatgcccagcctccttttagttttttaaagtttttccatacttttctcc---ataatagttgtactaatttacattcctaccaacagggtaccagggttctcctttctctaccatcttgccagcatttgttttgcctgtcttgcagataaaagccatttta
s panTro4.chr19                   59773473 472 + 63644993 ggatactatgaaagttctc--ttttttttttttt------------ttcttttttgagaaagagtttccctcct-tagtccaagctggagtcaaagtggtgcgaccttggctcattgcaacctctgcctcctgggttcaaatgattgtcctgactcagcctccctagtagctgtgattacaggtgcacgccaccatgcctggctaatttttgtattttttagcactgacgggatttcccaattttggccaggctgctctcaaactcctgacctcaagtgaggtgcctgcctcggtttcccaaagtgctgaaattacaggcataagccactatgcctatcctctttttagttttttaaagaatttccataattttctcc---ataatagttgtacaaatatacactcctaccaacagggtaccagcgttctcctttctctaccatcttgccagcacttgttttgcctgtcttgcagataaaagccatttta
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637493 473 + 60714840 ggatactatgaaagtttttcgtttgttgtttttg------------tttttgtttttgagacactttccctctg-t-gcccaggctggagtacaagtgatgtgatcttggctcattgcaacctccgcctcctgggttcaaacgattttcctgcctcagcctccttagtagcagggattacaggtgcacacccccatgcctggctactttttcttttttttagtatagatggggtttccccatgttggctgagctgctctcaaactcatgacctcaactgaggtgcccgcctcggtgtcacaaagtgctgggattacaggcatgatccaccgcacccaacctctttttagttatttaaaggacttccatacttttctcc---gtaatggctgtactaatttacactcctaccaacagggtaccagggttctcctttctctacccccttgccagcatttcttttgcctgtcttgcagctaaaagccatttta
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47748507 484 + 51301725 agatcctCTGGAAGTTCTC--tttttaggttttggtttatgctttttgtttttttgacaagaagtttcactcttgttgcccaggctggggtgtaa-tggcaccatctgggctcactgcaacctctacctccaggattcaagtgattctcctgcctcagcctcctgagtagttg-gattactggcacctgccaccacagctgcctaatttttgta-tttttagtagatacgggttttcaccgtgttggccaggctggtctcgaacccttggcatccagtgatccacccacttcagcctcccaaggtgctgggattacaagggtgagctgcagcacccagcctcttttta-ttttttgaggaacttccatattCTTCTCCTCTGTgaaagttgtactaatttatattcctgtcAACAGTGTATCAGGGTTCTCGTTTCTCCACCACCTTGTCAgtattttttttgtctgtctttgaaATAAAAGCCATTGTA
i papAnu2.chr19                   C 0 I 20744
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e chlSab2.chr6                    47427590 60475 + 50890351 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=23367.000000
s hg38.chr19_GL949751v2_alt         776130 123 +  1002683 cttta------tttattt-a-----------tttattt--atttatgttgagatggagtttcactcatagtcgcccaggctggagtgcaagggtgtgatctcggctcactgcaacctctgcctcccgcgttcaactgattctc
s panTro4.chr19                   59773945 130 + 63644993 ttttactttattttatttta-----------tttattt--atttatgttgagatgaagtttcgctcatactcgcccaggctggagtgcaatggtgtgatctcggctcactgcaacctccgcctcccgcgttcaagtgattctc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56637966 142 + 60714840 ttttattttattttattttattttattttattttattttattttattttgagatggagtttcgctc-ttgtcacctaggctggagtgcagtggcgcgatctcagctcaccgcaacctccacctcccaggttccagtgattctc
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e chlSab2.chr6                    47427590 60475 + 50890351 I
e papAnu2.chr19                   47748991 20744 + 51301725 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=26944.000000
s hg38.chr19_GL949751v2_alt         776253 71 +  1002683 ctgcctcagcctccaaagtagctgggattacaggcatgtgccaccacgcctagctaatttttgtatgttta
s panTro4.chr19                   59774075 71 + 63644993 ctgcctcagcctcccaagtagctgggattacaggcatgtgccaccacgcccggctaatttttgtatgtttg
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638108 71 + 60714840 ctgccccagcctcccgagtagctgggattacaggcacatgcaaccacgcccggctaatttttctatttttg
i ponAbe2.chr19                   C 0 C 0
s papAnu2.chr19                   47769735 71 + 51301725 CCGCCTCGCTCTccgaaactgctgggattacaggcatgagccaccatgcccagcctctttttagtttctta
i papAnu2.chr19                   I 20744 I 118
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e chlSab2.chr6                    47427590 60475 + 50890351 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=22097.000000
s hg38.chr19_GL949751v2_alt         776324 107 +  1002683 gtagagagggagtttctccatgttggtcaggctggt------ctcccgacctcaggtgatccgcccacctccgcctcccaaagtgctggaattacaggcgtgagccac------cggcc
s panTro4.chr19                   59774146 107 + 63644993 gtagagacgtagtttctccatgttggtgaggctggt------ctcccgacctcaggtgatccgcccacctccgcctcccaaagtgctggaattacaggcgtgagccac------cggcc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638179 119 + 60714840 gtagagacagtgtttctccatgtgggtcaggctggtctcaaactcccgacctcaggagattcgcccacctcaggctctcaaagttctaggatgatagaggtgagccaccacgctcggcc
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e chlSab2.chr6                    47427590 60475 + 50890351 I
e papAnu2.chr19                   47769806 118 + 51301725 I
e macFas5.chr19                   55642217 7992 + 59248254 I
e rheMac3.chr19                   60527086 159 + 64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt         776431 1 +  1002683 t
s panTro4.chr19                   59774253 1 + 63644993 t
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638298 1 + 60714840 t
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60527245 1 + 64156825 t
i rheMac3.chr19                   I 159 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e chlSab2.chr6                    47427590 60475 + 50890351 I
e papAnu2.chr19                   47769806 118 + 51301725 I
e macFas5.chr19                   55642217 7992 + 59248254 I

a score=4766.000000
s hg38.chr19_GL949751v2_alt         776432 7 +  1002683 aaaaggc
s panTro4.chr19                   59774254 7 + 63644993 aaaaggc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638299 7 + 60714840 aaaagcc
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60527246 7 + 64156825 aaaagcc
i rheMac3.chr19                   C 0 C 0
s papAnu2.chr19                   47769924 7 + 51301725 aaaaacc
i papAnu2.chr19                   I 118 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e chlSab2.chr6                    47427590 60475 + 50890351 I
e macFas5.chr19                   55642217 7992 + 59248254 I

a score=511036.000000
s hg38.chr19_GL949751v2_alt         776439 491 +  1002683 attttaatgggatgagatgaaaactcatcgcga-ttgtaatttacatttctgtgatgatgagtgatgctgagcactttttcatatacgtgatcgccatttctatgttttgtttgtggagaaatgtctcctcatgtcttttgctcgttttttaattaaa----ttgttttattgagttgtttgagcttcttatatttccagttattaatcccatctcagatgaatagtttgcaaatatttgctcctattttgtgggttgtctcttcactttgttggtttatc-tttggtggtgcagaagttgcttggtttgatgtaat-cctaatggtctattttttgctttgattacttgtgttttgaaggttttaaacaaaatgtctttcgtcagacaaatgtc---------ttccccattattttcttctacatgtttcataggttcaggccttagactcatgtttttaatccattttcatttgatttttgtgtaaggtgacaggtatagatgc
s panTro4.chr19                   59774261 488 + 63644993 attttaatgggatgagatgaaaactcatcgcga-ttttaatttacacttctgtgatgatgagtgatgctgagcactttttcatatacgtgatcgccatttgtatgttttgtttgtggagaaatgtctcctcatgtcttttgctcattttttaattaaa----ttgtttt---gagttgtttgagcttcttatatttctagttattaatcccatctcaggtgaatagtttgcaaatatttgctcctattttgtgggttgtctcttcactttcttggtttatc-ttttgtggtgtagaagttgcttggtttgatgtaag-cctaatggtctattttttgctttgattacttgtgctttgaaggttttaaacaaaatgtctttcctcagacaaatgac---------ttccccattattttcttctacatgtttcataggttcaggccttagactcatgtttttaatccattttcatttgatttttgtgtatggtgacaggtagaggtgc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638306 471 + 60714840 attttaatggggtgagatgaaaactcacttcga-ttttcatttgcatttctctgatgatgagtgatactgagcacttcttcata----------------------------tgcggggaaat-----ttcatgtcttttgctcctttttcaattaaatcatttgttttattgagttgtttgagcttcttatatttctagttattaatcccgtctcagatgcatagtttgcacatatttactcccaatgtgtgccttgtctcttcacgttgttggtttatc-tttagtggcgcagaagttgcttagtttgatgtaat-cccaatggtctattttttgctttgattacttgtgttttgaaggtttaaaacaaagtgtctttcttcagacaaatgtcctggagcatttccccaatattttcttctacgtgtttcataggttcagcccttagactcacatctttaatccattttcatttgatttttgtgtatggtgacaggtagaggtgc
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60527253 503 + 64156825 attttaatggggtgagatgaaaattcattgtga-ttttaatttgcatttctctgatgatgagtgaaactgaacactttttcacacacatgatggtcatttatatgttttgtttgtggagaaatgtctgttcaagtcttttgctcattttttagttaaat--tttactttattgagttatgtgatcttcttatatttctagttattaatcctgtctcagatgcatagtctgcaaatattggctcccattctgtgggttgtctcttcactttgttgtttgcttgttttgcagtacagaagctgcttagtttgatgtaat-cccaatggtctgtttattgctttgattatttgtgtttttgaggtttcaaacaaaatgtctcttctcagacaaaggtcctgaagcacttcctcaatattttcttctacgtgtttcataggttcaggccttagactcatgtatttattccattttgatttggtttttgtggatgatgagacgtagagctgc
i rheMac3.chr19                   C 0 C 0
s papAnu2.chr19                   47769931 504 + 51301725 attttaatggGGTGAGATGAAAATTCATTgtgatttttcatttgtatttctctgatgatgagtgatacTGAACAC--TTTCATACACATGATGGCCatttatatgttttgtttgtggagaaatatctcttcatgtcttttgctaattttttagttaaattatttgttttattgagtTATGTGAGCTTCTTGTATTTCTAGTTATAAATCCCgtctcagatgcatagtttgcaattattggctcccattctgtgggttgtctcttcactttgttggttattggttttgcagtgcagaagctgcTTAGTTGGATATAAT-CTCTGTGGTCTGTTTTTTGCTTTGATTACTTGTGTTTTTGAGGTTTTAaacaaaatgtcttttctcagacaaatgtcctgaagcatttccccaatattttcttctacatgTTTCATAGGTTCAGGACTTAGACTCCTGCATTTAATCTATTTGGATTTGTCTCTTCTGAATGGTGAGAGGAAGAGGTGC
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47488065 504 + 50890351 attttaatggggtgagatgaaaattcattgtgatttttcatttgtatttctctgatgatgagtgatactgaacac--tttcatacacatgatggccatttatatgttttgtttgtggagaaatgtctgttcaagtcttttgctcattttttagttaaattgtttgttttattgagttatgtgagcttcttatatttctagttat-aatcccgtctcagatgcatagtttgcaaatattggctcccattctgtgggttgtctcttcactttgttggttgcttattttgcagtgcagaagctgcttagtttgatgtaatcccctacggtccgttttttgctttgattactcgtgtttttgaggttttaaacaaaatgtcttttctcagaccgatgtcctgaagcatttccccaatattttcttctacatgtttcataggttcagggcttagactcatgtatttaatccatttggatttgacttttctgaatggtgagaggtagaggtgc
i chlSab2.chr6                    I 60475 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55642217 7992 + 59248254 I

a score=464522.000000
s hg38.chr19_GL949751v2_alt         776930 296 +  1002683 agttttattcctctgcatgtagatatccagttttccccacaccatttattgaa--gactgtcctttcttgattgtaagttctcggcacctttgtcaaagtccattaaatgggc----tgggcatggtggctcacacctgcaattccagcactttgggaggccgaggcgggtggatcacctaaagccaggagttcaagaccaggctggccaacagagtgaaacctcgtctctactaaaaatacaaaaattagctgagcatggtgatcagtgcctgtaataccactactcaggagtttgaagca
s panTro4.chr19                   59774749 298 + 63644993 agttttattcctctgcatgtagatatccagttttccccacaccatttattgaaaagactgtcctttcctgattgtaagttctcggcacctttgtcaaagtccattaaatgggc----tgggcgtggtggctcacacctgcagttccagcactttgggaggccgaggcgggtggatcacctaaagccaggagttcaagaccaggctggcgaacagagtgaaacctcatctctactaaaaatacaaaaattacctgagcatggtgatcagtgcctgtaataccactactcgggagtttgaagca
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56638777 298 + 60714840 agtttcattcttctgcatgtagatgtgcaggtttccctgcactgttgattgaaaagactgtcctttcctgattgtaagttcttggcacctttgtcaaagtccagtggatgggc----tgggcatggtggctaacacctgcaattgcagcactttgggagaccgaggcaggtggatcacctgaggccaggagttcaagatcagcctggccaacatggtgaaacatcgtctctactaaaaatacaaaaattagctgagcatggtggtcagcccctgtaataccactactcaagggtttgaggtg
i ponAbe2.chr19                   C 0 I 53815
s rheMac3.chr19                   60527756 302 + 64156825 agtttcattcctctgcatggagataaccagttttccccacattgtttattgaaaagactgtcctttcctgattgtagcctcctggcacctttgtcaaaatgcattggattggcagagcgggcatggtggctcacacctgcagtcccagcactttcagaggccaaggtgggtagatcacctgagacgaggagtttgaggcccgcctggccaacatagtaaaaccctgtctccactaaaagtacaaaaattagcttagcattgtggtcagtgcctgtaataccactactcaagactctgaggca
i rheMac3.chr19                   C 0 C 0
s macFas5.chr19                   55650209 297 + 59248254 agtttcattcc-ctgcatgcagataacccgttttccccgcatcgattattgaaaagactgtcgtttcctgattgtcggttcttgacacttttgtcaaaatgcattggattggc----tgggaatggtggctcacacctgcagtcccagcactttcagaggccaaggtgggtggatcacctgagaccaggagttccaggcccgcctggccaacatagtaaaaccctgtctccactaaaagtacaaaaattagctgagcatggtggtcagctcctgtcataccactactcaagagtctgaggca
i macFas5.chr19                   I 7992 C 0
s papAnu2.chr19                   47770435 297 + 51301725 AGTTTCATTCC-CTGCATGCAGATAACCCATTTTCCCCACATCGTTTATTGAAAAGATTGTCCTTTCCTGATTGTAGGTTCTTGACACTTTTGTCAAAATGCATtggattggc----tgggcatggtggctcacacctgcaatcccagcactttcagaggccaaggtgggtggatcacctgagaccaggagttcaaggcccgcctggccaacatagtaaaaccctgtctccactaaaagtacaaaaattagctgaacatggtggtcaGCGCCTGTAATACCACTACTCGAGAgtctgaagca
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47488569 297 + 50890351 agtttcattcc-ctgcatggagataacccgttttccctgcatcgtttattgaaaagactgtcctttcctgattgtaggttcttgacacttttgtcaaaatgcattggattggc----tgggcatggtggctcacacctgcaatcccaggactttcagaggccaaggtgggtggatcacctgagaccaggagttcgaggcccgcttggccaacatagtaaaaccctgtctccactaaaagtacaaaaattagctgagcatggtggtcaccacctgtaataccactactcaagagtctgaggca
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I

a score=2065454.000000
s hg38.chr19_GL949751v2_alt         777226 1267 +  1002683 agagaatttcttgaatccaggaagtggaggttgcattgagctgagattgcacctctacactccagcctgcatgacagagcaagattccatcacacacacaca-----------aaagaaagccattggatgtaaatgcatggattatatctgtgttctccattctgttccatt-ttttatgtgcctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacatatttctaagtcaggtagtgtg-------------------atgctcctgttttctctttataccttcaagTCTCAAGACAGTGGGCATCGCACACAAAAATTATGGAGAAAAGGATCCCAAGACTCCCAGGGTCCAACATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAGGACAAGCACCCTCATTTCCTCACATCTCTCCTGTCCCGTGTTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACAGAACCAAGCTCCAAATCTGGTGAGTAAAGGACCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTggaagccttggatgcaagtgttggctcaa-acctcccagctctgtgaatgagggcctgtcttccacca--tctctgaactccagacactccaacagtgaaagggatCTAGGGCCACCAAAGGGCTCAGCGAAGTCTCTTTACCTTTAATTTCCTGCAGGTGAGACCTCCTACAAGCTAGAAGAATAATTGCCAATCTGACATCCTTCTCAGGAAACATGCAGTGTTTTTTCTGCCTGCATTCCTAACTGGAGGATAAATTCCCGGGGGCTTGAGAGAGGGAAGGGAAGGGAACATCTGATGAGGGTG-GGTGTTTTAGAGAAGTTCCACTTGCCAAGGAATGAATTACTGTTGGTCATCAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACAGAGAACAGAGC---------TCATGCACGCACACTTCGACTCACTGACTCATTCAGCCACAGCCCCATGCTCAGGCTGTGCAGTGTGGAAGCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaacggttatttaattatcttacagtgctgtagctcaaagcatgacgtgcatgtcactgggctaaaatcaaggtgacagcaaggctgccttccctctgagggttccaggcaagaatctgcttctcacttttctcagcttctagaggctcccatgttccttggctcctggtacccttcctccttcctcaaa
s panTro4.chr19                   59775047 1267 + 63644993 agagaattgcttgaatccaggaagtggaggttgcattgagctgagattgcacctctgcactccagcctgcatgacagagcaagattccatcacatacacaca-----------caaaaaagccattggatgtaaatgcatggattatatctgtgttctccattctgttccatt-ttttatgtgcctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacatatttctaagtcaggtagtgtg-------------------atgctcctgttttctctttATACCTTGAAGTCTCAAGACAGTGGGCATCACACACAAAAATTATGGAGAAGAGGATCCCAAGACTCCCAGAGTCCAACATTAGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCATTGAGTAGAGGACAAGCACCCTCATTTCCTCACATCTCTCCTGTCCCATGTTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACAGAACCAAGCTCTAAATCTGGTGAGTAAAGGACCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTggaagccttggatgcaagtgttggctcaa-acctcccagctctgtgaatgagggcctgtcttccacca--tctcggaactccagacactccaatagtgaaatggATCTAGGGCCACCAAAGGGCTCAGTGAAGTCTCTTAATCTTTAATTTTCTGCAGCTGAGACCTCCTACAAGCTAGAAGAATAATTGCAAATCTGACATCCTTCTCAGGAAAAATGCAGTGTTTTTTCTGCCTGCATTCCTTACTAGAGGACAAATTCCTGCGGGCTTGAAAGAGGGAAGGGAAGGGAACATCTGATGAGGGTG-GGTGTTTTAGAGAAGTTCCACTTGCCCAGGAATGAATTACTGTTGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCTGTAACAGAGAACAGAGC---------TCATGCACGCACACTTCGACTCACTGACTCATTCAGCCACGGCCCCATGCTCAGGCTGTGCAGTGTGGGACCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaacagttatttaattatcttacagtgctgtagctcaaagtatgaagtgcatctcactgggctaaaatcaaggtgacagcaaggctgccttccctctgagggttccaggcaagaatctgcttctcacttgtcccagcttctagaggctcccacattccttggctcctggtccccttcctccttcctcaaa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56692890 1281 + 60714840 agagaattgcttgaatccaggaggtggaggttgcattgagctgagattgcacctctgcactccagcctgcatgacagagcaagattccatcaca---aaaaa-----------aaaaaaaGCCAttggatgtaaatgcatggattatatctgtgttctccattctgttctatt-ttttatgtgcctttctttatgccaatgtcatgctgttttgcttactacagctctgtaacatatttctaagtcaggtagtgtgatactcctgttttctctttatactcCTGTTTTCTCTTTATACCTTGAAGTCTCAAGACAGTGGGAATCACACACAAAAATTATGGAGAAGAGGATCCCAAGACTCCCAGGGTCCAACATTAGATAACAGAATGTTGGCCATGAACCAACCTCAAAGATTTCCATCAAGTAGAGGACAAGCACCCTCATTTCCTCACATCTCTCCTGTCCCATGTTCTAGGAAACCCTTCAAATAGTTGGCCTTCACCCACAGAACCAAGCTCCAAATCTGGTGAGTAAAGGACCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTggaagccttggatgcaagtgttggctcaa-acctcccagctctgtgaatgagggcctgtcttccacca--tctctgaactccagacactccaacagtgaaagggatCTGGGGCCACCAAAGGGCTCAGTGAAGTCTCTTAATCTTTAATTTTCTGCAGCTGAGGCCTCCTACAAGCTA-AAGAATAATTGCAAATCTGACATCCTTCTCAGGAAAAATGCAGTGTTTTTTCTGCCTGCATTCCTAACTGGGGGATAAATTCCTGGGGGCTT-AGAGAGGGAAGGGAAGGGAACATCTGATGAGGGTG-GGTGTTTTAGAGAAGTTCTACTTGCCAAGGAATGAGCTCCTGTTGATCATGAAGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCCGTAACAGAGAACAGAGC---------TCATGCACGCACACTTCGACTCACTGACTCATTCAGCCACAGCCACATGCTCAGGCTGTGCAGTGTGGAACCTtttcctattgttgccataacaaatttccacaagattcgtgggtgaaaacaaaacagttatttaattatctttcagtgctgtagctcaaagtatgaagtgcatcttactgggctaaaatcaaggtgacagcaaggctgccttccccctgagggttccaggcaagaatctgcttctcacttttcccagcttctagaggctcccacattccttgactcctggtccccttcctccttcctcaaa
i ponAbe2.chr19                   I 53815 C 0
s rheMac3.chr19                   60528058 1261 + 64156825 aaagaattgcttgaacccagtagacagaggttgttg-gaaccgagactgcacctctgcaatccagcctgagtaacagagcaagattccatctcaaaaa---------------aaagaatgccattgaatgtagatgcatgga-tatatctgtattctgcatttcattccattgttctatgcacctttccttatgccaacgtcatgctgttttgtttactacagctctgtaacacatttttaagtcaggtaatgag-------------------atgttcctgttttCTCTCTGTACCATAAACTCTCAAGACAATGGGAAACACATACAAAAATTATGGAGAAGAGGATCCCAGGACTCCCAGAGCCCAGTGTTGGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCTCATTTCCTCACCTCTCTCCCGTTTC-TATTCTAGGAAACCCTTCACGTAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCAGTGAGTAAAGAATCCCTCTTATCTCTGCTTTTGGAAACCTGgggaggtggaagccttggattcaagccttggctcagcacctcccagctc--tgactgtgggcctgtcttccaccatctctctgaactccagacactccaaaagcaaaagggatcttggcccagcacagggctccgtgaagtctcttcatctctaattttctgtAGCTGAGACCTCCTACAAGCTGGAAGAATGATTGCAAATCTGACATCCTTCTCAGGAAAAATGCAGTGTTTGTTCTCCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAAAGAGGGAAGGGAAGGGAACATCTAATGAGGCCAAGGTGTTTTAGAGAAGATCCACTTGCCAAAGAATGAGCTCCTGTTGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTG-AGTAACAGAGAACAGAGCTCATGCACACCTTGCACGCACACTTCGACTCACTGACTCATTCAGCCATGGCCCCATGCTCAGGCCGTGCAGT-TAGAATCCttttctattgttgccataacaaatttccacaaaattggtggatgaaaacaaaacggctttttaattatcttacagtgctgtagctcaaaggatgaaatgcacctcactgggctaaaatcaaggtgacagcaaggctgccttccctccgaaggttccaggcgagaatctgct---------tcccagtttctagaggctcccacgttccttggctcctggtccccttcctccttcctcaaa
i rheMac3.chr19                   C 0 I 4
s macFas5.chr19                   55650506 1265 + 59248254 agagaattgcttgaattcaggagacagaggttactgtgagccgagattgcacctctgcaccccagcctggttaacagagcaagattccatctcaaaaaaaaaaaaaagaaaagaaaaaaaaccattgaatgtagacggatagattatatctgtgttctgcatttcattccattgttctatgcacctttccttatgccaacgtcatgctgttttgtttactacagctctgtaacacatttttaagtcaggtaatgtg-------------------atgttcctgttttCTCTCTGTACCGTAAACTCTCAAGACAATGGGCAACACATACAAAAATTATGGAGAAGAGGATCCCAGGACTCCCAGAGCCCAGTGTTGGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCTCATTTCCTCACCTCTCTCCCGTTTC-TATTCTAGGAAACCCTTCACGTAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCAGTGAGTAAAGAATCCCTCTTATCTCTGCTTTTGGAAACCTGgggaggtggaagccttggattcaagccttggctcagcacctcccagctc--tgactgtgggcctgtcttccaccatctctctgaactccagacactccaacagcaaaagggatcttggcccagcacagggctccgtaaagtctcttcatctctaattttctgtAGCTGAGACCTCCTACAAGCTGAAAGAATGATTGCAAATCTGACATCCTTCTCAGGAAAAATGCAG----TGTTCTCCCTGCATTCCTAACTGGAGGATAAATTCCTGGGGGCTTGAAAGAGGGAAGGGAAGGGAACATCTAATGATGGTGAGGTGTTTTAGAGAAGTTCCACTTGCCAAGGAATGAACTCCTGTGGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCCAGAGCCTTGCAGTAA--------AGAG----------CCTTGCACGCACACTCCGACTCACTGACTCATTCAGCCATGGCCCCATGCTCAGGCTGTGCAGT-TAGAATCCttttctattgttgccataacacatttccacaaaattggtggatgaaaac-aaacggctttttaattatcttacagtgctgtagctcaaaggatgaaatgcacctcactgggctaaaatcaaggtgacagcaaggctgccttccctccgaaggttccaggcgagaatctgctcttcacatgtcccagtttctagaggctcccacgttccttggctcctggtccccttcctccttcctcaaa
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47770732 1256 + 51301725 agagaattgcttgaattcaggagacagaggttgctgtgagccgagattgcacctctacactccagcttgggtgacagagcaagattccatctcaaaaaaa-------------caaaacagccgtTGAATGTAGACGCATAGATTATATCTGTGTTCTTCATTTTACTCCGTTGTTCTATGCACTTTTCTTTATGCCAAcgtcatgctgttttgtttactacagctctgtaacatatttttaagtcaggtaatgtg-------------------atgttcCTGTTTTCCCTCTATATCTTAAAGTCTCGAGACAATGGgtaacacatacaaaaattatggaGAAGAGGATCCCAGGACTCCCAGAGCCCAGTGTTGGATAACAGAGTGTTGGCCGTGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCTCATTTCCTCACCTCTGTCCTGTCTC-TATTCTAGGAAACCCTTCAAGTAGTTGGCCTTCACCCACTGAACCAAGCTCCAAAACCGGTGAGTAAAGAATCCCTCTTATCTCTGCTTTTGGAAACCTGGGGAGGTGGAAGCCTTGGATTCAAGCCTTGGCTCAGCACCTCCCAGCTC--TGATTGTGGGCCTGTCTTCCACCATGTCTCTGAACTCCAGACACTCCAACAGCAAAAGGGACCTTGGCCCAGCACAGGGCTCAGTGAATTCTCTTAATCTCTAATTTTCTGTAACTGAGACCTCCTACAAGCTGAAACAATGATTGCAAATCTGACATCCTTCTCAGGAAAAATGCAGTGTTTGTTCTCCCTGCATTCCTAACTGGAGGATGAATTCCT-GGGATttgaaagagggaaaggaagggaacaTCTAATGAGGCTGAGGTGTTTTAGAAAAGTTCCACTTGCCAAGGAATGAGCTCCTGTGGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCAGTAA--------AGAG----------CCTTGCACGCACACTTCGACTCACTGACTCATTCAGCCATGGCCCCAAGCTCAGGCTGGGCAGT-TAGAATCCTTTCCTAGTGTTGCcataacaaatttccacaaaattGGTGGATGAAAACAAAacgactttttaattattttacagtgCTGTAGCTCAAAGGATGAAATGCacctcactgggctaaaatcaaggtgacAGCAAGgctgccttccctctgaaggTTCCAGGCGAGAATCTGCTCTTCACATGTCCCAGTTTCTAGAAGCTCCCACGTTCCTTGGCTCCtggtccccttcctccttcctcaaa
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47488866 1265 + 50890351 agagaattgcttgaattcaggagacggaggttgctgtgagacgagattgcacctctgcactccagcttgggtgacagagcaagattccatctcaaaaaaaaaaaaaaaa----aaaaaaagccgttgaatgtagacgtatagattatatctgtgttcttcatttttctccattgttctatgcatttttctttatgccaacatcatgctgttttgcttactacagctctgtaacatatttttaagtcaggtaatgtg-------------------atattcctgttttcttTCTATATCTTAAAGTCTCAAGACAAGGGGCAAAACATACAAAAATTATGGAGAAGAGGATCCCAGGACTCCCAGAGCCCAGTGTTGGATAACAGAGTGTTGGCCATGAACCAACCTCAAAGATTTCCCTTGAGTAGAGGACAGGCACCCTCATTTCCTCACCTCTCTCCGGTCTC-TATTCTAGGAAACCCTTCACGTAGTTGGCCTTCACCCACTGAACCAAACTCCAAAACCGGTGAGTAAA-AATCCCTTTTATCTCTGCTTTTGGAAACCTGGGGAGATggaagccttggattcaagccttggctcagcacctcccagctc--tgattatgggcctgtcttccaccatctctctgaactccagacactccaatagcaaaagggatCTTGGCCCAGCGCAGAGCTCCGTGAAGTCTCTTAATCTCTAATCTTCTGCAGCTGAGACCTCCTACAAGCTGGAAGAATGATTGCAAATCTGACATCCTTCTCAGGAAAAATGCAGTGTTTGTTCTCCCTGCATTCCTAACTAGAGGATAAATTCCTGGGGGCTTGAAAGAGGGAAGGGAAGGGAACATCTAATGAGGCCAAGGTGTTTTAGAGAAGATCCACTTGCCAAGGAATGAACTCCTGTGGGTCATGAGGCAACCCTGGCTGACTCAGCAGAGCAAGAGCCTTGCAGTAA--------AGAG----------CCTTGCACGCACACTCCGACTCTCTGACTCATTCATCCATGGCCCCATGCTCAGGCTGTGCAGT-TAGAATCCtttcctattgttgccataacacatttccacaaaattggtggatgaaaacaaagcagctttttaattatcttacagtgctgtagctcaaaggatgaaatgcacctcactgggctaaaatcaaggtgacagcaaggctgccttccctccgaaggttccaggcgagaatctgctcttcacatgtcccagtttctagaggctcccacgttccttggctcctggtccccttcctccttcctcaaa
i chlSab2.chr6                    C 0 T 34357
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457    0 -    21488 I

a score=1898.000000
s hg38.chr19_GL949751v2_alt         778493 2 +  1002683 gc
s panTro4.chr19                   59776314 2 + 63644993 ac
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56694171 2 + 60714840 gc
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55651771 2 + 59248254 ac
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47771988 2 + 51301725 AC
i papAnu2.chr19                   C 0 T 20206
s chlSab2.chr6                    47455774 2 + 50890351 ac
i chlSab2.chr6                    T 34357 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e rheMac3.chr19                   60529319 4 + 64156825 I

a score=210008.000000
s hg38.chr19_GL949751v2_alt         778495 471 +  1002683 ccacaaagactggtcacatctcacatggcatcactcagacccttcttcctta-ccacacctctttctctgaatgctgctctcccttcttccccttcttttgaaaacttggggattctattgggttcaccaagatgaaaatccatcataatctcccggaaatcatccaggataccctccttttaagttcagctgactagcaaccataattccatctgcaatcttcattcctcct-ttcatgtaaaataacatattcacaagctatggaggctaggacatggacatttttggggtgggacaacattctcctgccttccacaAACAGTGAACAAGATGCATTTGGCCTCTGTTCTTGGGACACTGATCTTGCAGATGGTTAAATGGGAGGGCAGAAAATGTAGGCACAAGGGGACCAATAAATGAATGATCTATTGAGAAGCATCTGTGCATGAAATCTATTTATTTATGTATTTA---
s panTro4.chr19                   59776316 467 + 63644993 ccacaaaggctggtcacatctcacatggcatcactcagacccttcttcctta-ccacacctctttctctgaatgctgctctcccttcttccccttcttttgaaaacttggggattctattgggttcaccaagatgaaaatccatcataatctcccggaaatcatccaggataccctccttttaagttcagctgattagcaaccgtaattccatctgcaatcttcattcctcct-tccatgtaaaataacatattcacaagctatggaggctaggacagggacatttctggggTGGGGTGGCATTCTTCT----TCCACAAATAGTAAACAAGATGCATTTACCCTCTGTTCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGGCAGAAAATGTATGCACAAGTGGACCAATAAATGAATGATCTATTGAGAAGCATCTGTGCATGAAATCTATTTATTTATGTATTTA---
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56694173 465 + 60714840 ccaaaaaggctggtcacatctcacatggcatcactcagacccttcttcctta-ccacacctctttctctgaatgctgctttcccttcttccacatgttttgaaaacttggggattctatcaggttcactaagatgaaaatccctcataatctcccggaagtc-tccaggatacccttgttttaagttcagctgattagcaactgtaattccatcagcaatcttcattcctcct-ttcatgtaaaataacatattcacaagctatggagactaggacatggacatttttggggTGGGGTGGCATTCTTCT----TCCACAAATAGTAAACAAGATGCATTTGGCCTCTGCTCTTGGGACACTGATATTGCAGATGGTTAAATGGGAGGACAG-AAATGCATGCACAGGTGGACCAATAAATAAATGATCCATTGAGAAGCATCGGTGCATGAAatctatttgtttatttattta---
i ponAbe2.chr19                   C 0 T 17388
s chlSab2.chr6                    47455776 472 + 50890351 ccacaaagactggtcacgtctcacatggcatcactcagacccttcttccttgtccacacctctttctctgaatgttcctctgctttcttcctcatttcttaagggctttgggattttattgggttcaccaagat---aatctatcatcatctccctaaaatcatccaggataccctcctttccagttcagctgattagtaaccgtaattccatctgcaatcttcgttcttcctctccacgtaaaatcacatattcacaaggtgtgaaggctaggacagggacattttgggggtggggtgg-attctcctgccttccacaAATAGTAAACAGGATGCATTTGGCCTGTGCTCTTGGGACACTGACGTTGCAGATGGGTAAACGGGAGGAAAGAAAATGAATGCACAAGTGGACCTATAAATGGTTGATCCACTGGGAAACATCGGTGCATGAAattgatttatttatgtatgtatta
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=2024.000000
s hg38.chr19_GL949751v2_alt         778966 13 +  1002683 CCTACttgtttat
s panTro4.chr19                   59776783 13 + 63644993 CCTACTTAtttat
i panTro4.chr19                   C 0 C 0
s chlSab2.chr6                    47456248 13 + 50890351 attATGTAtttat
i chlSab2.chr6                    C 0 C 0
e ponAbe2.chr19                   56694638 17388 + 60714840 T
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773  0 + 59248254 C
e rheMac3.chr19                   60529319  4 + 64156825 I

a score=231066.000000
s hg38.chr19_GL949751v2_alt         778979 574 +  1002683 tgagacggagccttgctctgtcgtccaggctagagtgcggtggcatgatctcggctcactgcaacctccacctcctgggctgaacgga-tctcctccctcagcctctccagtagctgggattacagaccacaaccaccacgcccggctaactctttttgcatattttctgtag---agaggatgtttcaccatgttggccaggctggtctcaaattcccaacctcaggtgatccaatagcctctgcctcccaacacgctgggataagaggcatgagccacggggccaagccAAATTTTCAAATCAATAATAGATAATGCTGAGTGTATGATTTCAGGTGACAGAGAAGTTCTCACTAATCAGATATT---TGTGACATTAATGAAAAACACGGATTGAACCCCTGAAAGATGGGCGGAAGGATTTTGCACACACAGCTGTCAGCCGTGAAGGCACAAAGGTGAAAATAATCTGATGTTGAAGGAAGAGGCTCTGCCTCAAATGCTGGGAATGACGTGGGGAGAATGACAAGACGACTGTAGAGAGACGGAGAGCACACTGGGTACACAGGAAACTAAGGAG
s panTro4.chr19                   59776796 574 + 63644993 tgagacggagtcttgctctgtcatccaggctagagtgcagtggcatgatctcggctcaatgcaacctccacctcctgggttgaactga-tctcctccctcagcctctccagtagctgggattacagaccacaaccaccaagcccggctaactctttttgcatattttctgtag---agaggatgttccaccatgttggccaggctggtctcaaattcccaacctcaagtgatccaatagcctctgcctcccaacccgctggggtaagaggcatgagccacGGGTCCAAGCCAAATTTTCAAATCAATAATAGATAATGCTGAGTGTATTATTTCAGGTGACAGAGAAGTTCTCACTAATCAGATATT---TGTGACATTAATGAAAAACACGGATTGAACCCCTGAAAGATTGGCGGAAGGATTTTCCACACACAGCTGTCAGCCGTGAAGGCACAAATGTGAAAACAATCTGATGTTGAAGGAAGAGGCTCTGCCTGAAATGCTGGGAATGAGATGGGGAGAATGACAAGACGACTGTGGAGAGATGGAGAGCACACTGGGTACACAGGAAACTAAGGAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56677250 578 + 60714840 tgagacagtgtctccctctgtgccccaggctggagtgcagtggcgggatctcggctcactgcagcctccacctcccaggttaaagtgattctcctcactcagcttcccgagaggctgggattacacccatgtcccaccacgcctggctaatttttttttggtattttttttagtgcagacaaggttttaccatgttgcccaggct-atctcaaactcccaaccttaagggatccgcccgcctcagcctcccaaagtgctgagattagaggcgtgagccacggcgcTGAGCCGTATTTTAAAATAAATAATAGATAATGCTgagtgtataatttcaggtgacagagaagttctcactgatcaaatattacctgtgaccttaacgaaaaaagtagatc-aacccctggaa-attggcggaaggattttccacacacagctgtcagccgtgaaggcacaaaggtgaaagcaatcttatgttgaaggaagaggctctgcctgaaatgctgggaatggcatggggagaatgacaacacgactgtagagagacggagagcACACTGGGTACACAGGAAACTAAGGAG
i ponAbe2.chr19                   T 17388 C 0
s chlSab2.chr6                    47456261 574 + 50890351 taagatggagtctcgctctatcccctaggctgcagtgcagtgtcacgatcttggctcactgtaacctccgcctcctgggttcaagtgattcttctgcctcagcctctcaagcagcttgga-tacaggcacccgccaccacacctggctaattctttttgtagattgttgttag---agaccatgtttcaccatgtggcccagtct-atctccaactccctatctaaagtaatccgaccgcctcagcctcccaaagtgctcggattataggcgtgaaccccggcacccagccAGAATTTAAAATAAATAACAGATAATACTGAGTGTATGATTTCAGGTCACAGAGAAGTTCTCACTGATCAAATAATACTTGTGATCTTAATGAAAAAAATAGATC-AACCCCTGGAAGACTGGCGGAAGGATTTTCCACACACAGCAGTCAGCTGTGAAGGCACAAAGGTGACAACAATCTTATGTGGAAGGAAGAGGCTCTGCCTGAAACACTGGGAATGAGATGGGGAGAATTACAAGACCACTGGAGAGAGA-GAAGAGCACACTGGGCACACAGGAAACTAAGGAG
i chlSab2.chr6                    C 0 I 6918
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=-150.000000
s hg38.chr19_GL949751v2_alt         779553 1 +  1002683 C
s panTro4.chr19                   59777370 1 + 63644993 G
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56677828 1 + 60714840 G
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e chlSab2.chr6                    47456835 6918 + 50890351 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773 0 + 59248254 C
e rheMac3.chr19                   60529319 4 + 64156825 I

a score=87981.000000
s hg38.chr19_GL949751v2_alt         779554 174 +  1002683 AACAAGGAGTGTGTGTTTGACACTCACAGCCATTGGACTCACCTCGGGGTAACCAGGAATCCCTACATGATTAATA-TGACTGACATGAAAATAAGGGAGGCCCAGGTGCGTAACTGGAATCTAGGAGACCGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGA
s panTro4.chr19                   59777371 175 + 63644993 AACAAGGAGTGTGTGTTTTATACTCACAGCCCTTGGATTCACCTCAGGGTAACCAGGAATCCCTACGTGATTAATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGCATAACTGGAATCTAGGAGATCGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGA
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56677829 175 + 60714840 AATAAGGGGTGTGTGTTTTATACTCACAGCCATTGGACTCACCTCGGGGTAACTAGGAATCCCTACATGATTAATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGCATAACTGGAATCTAGGAGACCGTGGAAAAGGCAATTCCCGCCCCACTGGTGAAATGTGGTGCTGA
i ponAbe2.chr19                   C 0 I 16664
s chlSab2.chr6                    47463753 175 + 50890351 GACAAGGAGTGTGTGTTTTATACTCACAGCCCTTGGATTCACCTCGGGCTAACTAGGAATCCCTACGTGATTTATAGTGACTGACATGAAAATAAGGGAGGCCCAGGTGCGTAACTGGAATCTAGGAGACTGTGGAAAAGGCAATTCCCACCTCACTGGTGAAATATGTTGCGTA
i chlSab2.chr6                    I 6918 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=150338.000000
s hg38.chr19_GL949751v2_alt         779728 338 +  1002683 TTTAGACACTAAATGAATGAAGTAGATGGATATAAGATATGTTTGTGAGGTAGAATCATTGGCTGGAAAGGCTTGCTGGGTTTGATTTTTTCCTGGTAGTTTAATCCTCGCTTCACTAACTTATTTCTGAGATTTATTTCTCCTGCATCTAAATCAATACCTGGCAGAGGAGGGAGAGCTAGATGAGGGGTGGTGCAAATGAAGGGACCTAGTATAGCATAATATACAAGGCTGTGAAcggtggctcacgcctgtaacccagcacttcaggaggccaacgcgggtggatcacatgaagtcaggagttcgagaccagcctggccaacatggagaaaccc
s panTro4.chr19                   59777546 337 + 63644993 TTTAGACCCTAAGTGGATGAAGTAGATGGATATAAGATATGCTTGTGAGGTAGAATCATTGGCTGGAAAGGCTCGCTGGGTTTGATTTCT-CCTGGTAGTTTAATCCTCGCTTCACCAACTTATTTCTGAGATTTATTTCTCCTGCATCTAAATCAATACCTGGCAGAGGAGGGAGAGCTAGATGAGGGGTGGTGCAAACGAAGGGACCTAGTATAGCATAATATACAAggctgtgaacggtggctcacgcctgtaacccagcacttcaggaggccaacgcgggtggatcacatgaagtcaggagttcgagaccagcctggccaacatggagaaaccc
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56694668 337 + 60714840 TTTAGACACTAAGTGGGTGAAGTAGATGGATATAACACATGTTTGTGAGGTAGAATCATTGGCTGGAAAGGCTTGCTGGGTTGGATTTTT-CCTCGTAGTTTAATCCTTGCTTCATTAACTTATTTCTGAGATTTATTTCTCCTGCACCTAAATCAATACCTGGCAGAGGAGTGAGAGATAGATGAGGGGTGGTGCAAATGAAGGGACCTATTATAGCATAATATACAAGGCTGTGAAcggtggctcacgcctgtaacccagcactgcaggaggccaacgcaggtggatcacatgaagtcaggagttcgagactagcctggccaacatggagaaactc
i ponAbe2.chr19                   I 16664 C 0
s chlSab2.chr6                    47463928 337 + 50890351 TTTAAACACTAAATGAATGAAGTGGATGGATACAAGATGTGTATGTGAGGTAGAATAATTCACAGGGAGGGCTTGCCTGGTTTGATTTTT-CCTAATTGTTCAATCTTCACTTCATTAATTTCTTTCTGAGATTTATTTTTCCTACATGTAAATCAATACCTGGCAGAGGACTGATTGATACATGAGGCGTGGTGCAAAGGAAGAGACTTATTATAATATAACACGCAAGGTTGTGAAcggtggctcacacctgtaacccaacattttgggaggctgaggcggatggatccattgaggtcaggagttcaagaatagcctggacactatgctcaaaccc
i chlSab2.chr6                    C 0 I 33
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=8743.000000
s hg38.chr19_GL949751v2_alt         780066 37 +  1002683 tatctctactaaaaatacaaaaattaaacaggcatga
s panTro4.chr19                   59777883 37 + 63644993 tatctctactaaaaatacaaaaattaagcaggcatga
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56695005 37 + 60714840 tatctgtactaataatacaaaaattaagcaggcgtgg
i ponAbe2.chr19                   C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457  0 -    21488 I
e chlSab2.chr6                    47464265 33 + 50890351 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773  0 + 59248254 C
e rheMac3.chr19                   60529319  4 + 64156825 I

a score=341157.000000
s hg38.chr19_GL949751v2_alt         780103 751 +  1002683 tggtggtgcatgactgtaatcccag---ctactctggaggaggaagcaggagaatgacttcagccctggaggcagaggttgcagtgagtggagatcgcgtcactgcacaccagcctgggctacacagggatactctggctcaaaaaa-taaaaataaaaaaTACATAAATATAATA--ATATACACAAATGATGCAGGCACCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGAAAATCAGCCTAAAACCTCTTCCATATTTGGCTTTCTGTGAACATGAGATCATATGGAAAATATGAAAGCCCCCTGAACCCACCAGCACAGGCCCTGAAATAGGGAAAGTGCTCTGTTCATCACAAGAAACTTGCCCCCTCACCCAAATCCCCCACCTCACCCCTACTTCCAATCACCTGTGGAGATACAGATAGATCATGGGGAGGTAAACGCTAATACTCCTTGGAGTGAGTTCAGATCTTGGAATCAGAGATCAGCACCAGCACTAGCTCCTGCTCCCCTTTCCTACTAATTCACAGGAGGACAGGTGGTTTTGAAGCAATAGATGGTGGAGGGGGTGGTCTTT-CCCCCAGCCTCTCAGGTGGAACAGCAGCCTAACATGTGTCTCGCGAGATCACAAAGAGTAGCACGTTTCACATGGGCTTCATCATTATTTCCTGGCTGTTTGACATAAGAGAATTCTACTTTGCTTTTTTGATCTTGATTT
s panTro4.chr19                   59777920 754 + 63644993 tggtggtgcatgactataatcccag---ctactctggaggatgaagcaggagaatgacttcagccctggaggcagaggttgcagtgagtggagatcgcgtcactgcacaccagcctgggtgacacagggatactctgtctcaaaaaaataaaaataaaaaaTACATAAATATAATATAACATACACAAATGATGCAGGCACCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGGTCCTTTATCTTATCCATTAGAAAATCAGCCTAAAACCTCTTCCGTATTTGGCTTTCTGTGAACATGAGATCATATGGAAAATATGAAAGCCCCCTGAACCCACCAGCACAGGCCCTGAAATAGGGAAAGTGCTCTGTTCATCACAAGAAACTTTCCCCCTCACCCAAATCCCCCACCTCACCCCTACTTCCAATCACCTGTGGAGATACAGATAGACCATGGGGAGGTAAACGCTAATACTCCTTGGAGTGAGTTCAGATCTTGGAATCAGAGATCAGCACCAGCACTAGCTCCTGCTCCCCTTTCCTACTAATTCACAGGAGGACAGGTGGTTTTGAAGCAATAGATGGTGGAGGGGGTGGTCCTT-CCCCCAGCCTCTCAGGTGGAACAGCAGCCTAACATGTGTCTCGTGAGATCACAAAGAGTAGCACGTTTCACATGGGCTTCATCATTATTTCCTGGCTGTTCGACATAAGAGAATTCTACTTTGCTTTTCTGATCTTGATTT
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56695042 751 + 60714840 tggtggtgcatgactgtaatcccagctcctactctggaggaggaagcaggagaatgacttcagccctggaggcagaggttgcagtgagtcgagatcacgtcactgcacgccagcctgggcgacacagggacactccatctcaaaaaa-taaaaataaaaaaTACATAAATATA-----ACATACACAAATGATGCAGGCACCTGAATTCCAATCATCATTTTTCTATTTCTCTATAATTACTTCTTTGATCCTTTATCTTATCCATTAGAAAATCAGCCTAAAACCTCTTCCGTATTTGGCTTTCTGTGAACATGGGATCATATGGAAAATATGAAAGCCCCCTGAACCCACCAGCACAGGCCCTGAAATAGGGAAAGTGCACTGTTCATCACAAAAAATTTGCCCCCTCACCCAAATCCCCTACCTCAGCCCTACTTCCAATCACCTGTGGAGATACAGATAGACCATGGGGAGGTAAACGCTAATACTCCTTGGAGTGAGCTCAGATCTTGGAATCAGAGATCAGCGCCAGCACTAGCTCCTGCTCCCCTTTCGTACTAATTCACAGGAGGACAGGTGGTATTGAAGCAGTAGATGGTGGAGGGGGCGGTCCTT-CCCCCAGCCTCTCGGGTGGAACAGCAGCCTAACATGTGTCTCCTGAGATCACGAAGAGTAGCACGTTTCACACGGGTTTCACCATCATTTCCTGGATGTTTGACATAAAAGAATTCTACTTCTCTTTTTTGATCTTGATTT
i ponAbe2.chr19                   C 0 T 14765
s chlSab2.chr6                    47464298 747 + 50890351 tggtggcgcatgcctgtaataccag---ctattcgggaggctgaagcaggagaatggcttccacccgcgaggcagaggtttcagtgagccgagatcgc-tcattggactacaccctgggtgacagagtgagactctatctcaaaaaa-taaaaatacaaaaCACATAAATCTAATATAGCATACAGGAATGACAAAGGCACTTCAATCCCAATTATCATTTTTCTGTTTCTCTATAACGACTTCTTTGATCCTTTATCTTATTCATTAGAAAATCAGCCAAAAACGTCTTCCCTATTT-GCTTTCTGTGAGCCTGAGATCATATGGGAAATATGAAAGGCCCCTGAACCCACCAGCACAGGCCCTGGAATAGAGAAAGTTCTCTGTTCATGGCATAAAACTTGCCCCCTCAGCCAAATCCCCCACCTCACGCCTACTTCCTATCACATTAAGAGACACAGATAGACCGTGGGAAGATAAAAACTAACATTCTTTGGAGG----TCAGACCTTGGACTCAGAGACCAGTGCCAGCACCATCTCCTGGTCACCTTTTGTACGAATTCACAGAAGGACAGGTTGTACCGAAGCAATAGATGATGGAGGGGGTTGTCCTTGCCCCCGGACTCTCAGGTAGAACAGCAGCCTAATATATGACTCCCGAGATCACAAA-AGTAGCACGTTCTTCACAAGCTTCATCATTATTTCCTGGCTGTTTGATATATGACAGTTCTACTTCACTGTTTTGATCTTGATTT
i chlSab2.chr6                    I 33 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=252913.000000
s hg38.chr19_GL949751v2_alt         780854 535 +  1002683 CACTTTTGTGTCCTTTTCTTGGAGAATGTAA----TTTGAGTCAAGAGGGTTGTGGATGTAGAAACTGTAAAGCACATTCACTGTGTATCAATCCCAGTTCAGTCTTTCCAGAGAAGACTCTaaacacctgctgtactgcacctgggcctatgcaaatttctatcactcaccgtcactccagggagacagaacacacagagaatacgttacat-aggcaggttcattactaacagataagcagcgagtgacaacagaagcctacatttcaatgtgagccagtccctcaaggctcagaaaagcttctcgggacatatggagtcacctcatttgcagtgtatctgggggaagccagaaaatagcccagcctgggttttgtaccctgaagccacaggaagcactcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacagcacaggctgttctgagacgttcctcctgatctcaggacgttgctgtcttagtccatttttgttgctataaaagaacacttgagcctgggt
s panTro4.chr19                   59778674 535 + 63644993 CATTTTTGTGTCCTTTTCTTGGAGAAGGTAA----TTTGAGTCAAGAGGGTTGTGGATGTAGAAACTGTAAAGCACATTCACTGTGTATCAGTCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGGactgcacctgggcctatgccaattcctatcactcaccgtcacttcagggagacagaacacacagagaatacgttacat-aggcaggttcattactaacagataagcagcgagtgacaactgaagcctacatttcaatgtgagccagtccctcaaggctcagaaaagctgctcgggacatatggagtcacctcatttgcagtgtagctgggggaagccagaaaatagcccagcctgggttttgtaccctggagccacaggaagcactcagctaaagcactgcatgacatcctcctccaggaagaacaggaagacagcccagcctgttctgagacgttcctcctgatctcaggacgttgctgtcttagtccatttttgttgctctaaaggaacacttgagcctgggt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56681028 539 + 60714840 CACTGTTTTTGCCTTTACGTGGAGAATGTAATTTGTTTGAGTCAAGAGGGTTGTGGATGTAGAAACTGTAAAGCACATTCGCTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTaaacaccccaggtactgcacctggggctgtaccaatttctatcactcaccgtcactccagggagacagaacacacagagaatacattacat-aggcaggttcattacttatagataagcagcaagtgacaacagaaaccttcccttcagggtgagccagtccgccaaggctcagaaaaactgctcaggacacatggagtcacctcatgtgcactgtagctgggggaacccagaaagcagcccagcctgggtgttgtaccctggagccacaggaagcactcagctaaagcactgcatgacgtcctcctccaggaagaacaggaagacatgccacgctgttctgggacattcctcctgatctcaggatgttgctgtcttaatccatttttgttgctataaaagaacacttgagcctgggt
i ponAbe2.chr19                   T 14765 C 0
s chlSab2.chr6                    47465045 537 + 50890351 CACGTTATT--CCTTTTCTTGCTGAATGTAATGCGTTTGAGTCAAGTGGGTTGTGGCTGTAGAAATTGTAAGGCACATTCACTGTGTATCAATCCCAGTCCAGTCTTCCCAGAGAAGACTCTAAACACCTCCTGTactgcacctggggctatgccagcttctatccctcaccgtcactccagggagacagaacacacagagaatacatcacgtaaggtgggttcgttactaacagataaccagtaagtgacaacagaagcctgcatttcagtgtgagccagtcccccaaggctcagaaaagctgctcgggacatatggagtcactccatttgcactgcagctgagggaacccagaaagcagcccagcctgggttttgtaccctggagccacaggaagcactgagctaaagcactgcatgacgtcctcctctgggacgaacaggaagacagccca-gctgttctgggactttcctcctgatctcaggatgttgctgtcttagtccatttttgtggctgtaaaagaacacttgagcctgggt
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=217566.000000
s hg38.chr19_GL949751v2_alt         781389 2408 +  1002683 tacttCttttttttttttttttttt--GTATAGTGCTTCTGATGAGCTTTTTTTTTAAAtttttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcacccatcaactcgtcatttagcattaggtatatctcctaatgctatccctcccccctccccccacccaacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctataagtgagaacatgcagtgtttggatttttgtccttgtgatagtctactgagaatgatgatttccaatttcatccatgtccctgcaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttcatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtccatgtgtctttatagcagcatgatttatagtcctttgggtttatacccagtaatgggatggctgggtcaaatggtatttcaagctctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcccgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtcatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtcctttgcccactttttgataggattgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccattttgtaggttgtctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccgtttgtcaattttggcttttgttgccgttgcttttggtgttttagacatgaagtccttgtccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatctcaaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacctatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtgtgtcaaagatcacatagttgtagatatgtggcattatttctgagggctctattctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggcagcatgatgcctccagctttgttcttttggcttaggattgacttggcaatgcaggctcttttttgattccatatgaactttaaggtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcacgatcttgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcatatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttattggtgtataagaatgcttgtgatttttgtacattgattctgtatcctgagactttgtagaagctgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattcaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgaaagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatactggctgtgggtttgttatagatggctcttattattttgagatacgtcccatcaatgcctaatttattgagagtttttagcatgaagtgttgttgaattttgtcaaaggccttttctgcatctattgagataatcgtccggtttttgtctttggttctgtttatatgatggattacatttattgatttgcatatattgaaccagccttgcatcccagagcctgggc
s panTro4.chr19                   59779209 2407 + 63644993 aacttCtttttttttttttttttttttGTGTAGTGCTTCTGATGAGCTTTTTTTTTAAAtttt-attattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcacccatcaacttgtcatttagcattaggtatatctcctaatgctatccctcccccctccccc-accccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcagtgtttggatttttgtccttgtgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttcatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatggcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttcaagctctagatccctgaggaattgccacactgacttccacaatggttgaactagtttacagtcccatcaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtcatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatagggttgtttgcttttttcttgtaaattcgtttgggttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctctcattttgtaggttgtctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgtccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatctcgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacctatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctattctgttccatttatctatatctgtgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggcagcatgatgcctccagctttgttcttttggcttaggattgacttggcgatgctggctcttttttggttccatatgaactttaaggtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttctttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacgtcccttgtaaattggattcctaggtattttattctttttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttattggtatataagaatgcttgtgattgttgtacattgattttgtatcctgagactttgtagaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctggtcagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgtttccagtttttgcccattcagtatgatactggctgtgggtttgtcatagatggctcttattattttgagatacgtcccaccaatacctaatttattgagagtttttagcatgaag-gttgttgaattttgtcaaaggccttttctgcatctattgagataatcgtgtggtttttgtctttggttctgtttatatgatggattacatttattgatttgcatatattgaaccaggcttgcatcccagagcctgggt
i panTro4.chr19                   C 0 C 0
e ponAbe2.chr19                   56681567    0 + 60714840 C
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457    0 -    21488 I
e chlSab2.chr6                    47465582    0 + 50890351 C
e papAnu2.chr19                   47771990 20206 + 51301725 T
e macFas5.chr19                   55651773    0 + 59248254 C
e rheMac3.chr19                   60529319    4 + 64156825 I

a score=910.000000
s hg38.chr19_GL949751v2_alt         783797 1 +  1002683 a
s panTro4.chr19                   59781616 1 + 63644993 a
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56681567 1 + 60714840 a
i ponAbe2.chr19                   C 0 I 14437
s papAnu2.chr19                   47751784 1 + 51301725 A
i papAnu2.chr19                   T 20206 C 0
s chlSab2.chr6                    47465582 1 + 50890351 a
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e macFas5.chr19                   55651773 0 + 59248254 C
e rheMac3.chr19                   60529319 4 + 64156825 I

a score=126925.000000
s hg38.chr19_GL949751v2_alt         783798 195 +  1002683 acttctagagaaaacagatttgtttgcctcacagttctgcaggctgtactg-gaagcatggcaccagcatctgtttcctgtgacggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgcagagaccacagagatcacatggcaagagagggagcaaggggga-gggcgagcgatggagctt
s panTro4.chr19                   59781617 195 + 63644993 acttctagagaaaacagatttgtttgcctcacagttctgcagactgtactg-gaagcatggcaccagcatcggtttcctgtgatggcctcaggctgctcccactctgggagaagggaaggagggtctgtctgtgcagagaccacagagatcacacggcaagagagggagaaaggggga-gggcgagcgatggagctt
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56696005 194 + 60714840 acttctaaagaaaagagatttgtttccctcacagttctgcaggctgcactgcgaagcatggcaccagcatctatttcctgtgacggcctcaggctgctcccactctggcagaagggaaggagggtctgtctgtgc--agaccagagagatca-acggcaagagagggagtaagggggaggggggagcgatggagctt
i ponAbe2.chr19                   I 14437 C 0
s papAnu2.chr19                   47751785 188 + 51301725 ACTTCTACAGAAAACAGATTTGGTTGGTTCACGGTTCTGCAAAGTGTACAA-GAGGCAGGACACCAGCATCTATTTCTGGCTGCGGCCTCAGGCTGCTCCTACTCTGGTAGAAGAGAAGG-GGGCTTCCATGTGCAGAGACCACCGAGAGCACACGGCAAGACAGGGAAAAACGGGGT-------GTGATGGAGCTT
i papAnu2.chr19                   C 0 I 20017
s chlSab2.chr6                    47465583 188 + 50890351 acttctacagaaaagagaattggtcgactcacggttctgcaagctgtacta-gaggcaggacatcagcatctatttctggctgcggcctcaggctgctcctactctggtagaagagaagg-gggcctacatgtgcagagaccaccgagatcacacggcaagacagggagaaacggggt-------gtgatggagctt
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=102592.000000
s hg38.chr19_GL949751v2_alt         783993 254 +  1002683 ccaagctctttttaacaaccagccctccg-ggaactaatagagggggaacttgctaaccccatcatgtggggcagcattaatctattcatgatggatccacctccatgactcaaacaccttcccataggcccaaacttccacactgggggttaaatttcaatatttcagtgtgaggtttcaaagggtcaaacatctaaactaaagcagctgtatcctcagcatgttctatggtttctatgagagctgtaactgag
s panTro4.chr19                   59781812 254 + 63644993 ccaagctctttttaacaaccagctctccg-ggaactaatagagggggaacttgctaaccccatcatgtggggcagcattaatctattcatgatggatccacctccatgactcaaacaccttcccataggcccaaacttccacactgggggttaaatttcaatatttcagtgtgaggtttcaaagggtcaaacatctaaactaaagcagctgtatcctcagcacattctatggtttctatgagagctgtaactgag
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56696199 245 + 60714840 ccaagctctttttaacaagcagttctccgtggaactaatcgagggggggcttgctaaccccgtcgtgtggggcagcattgatctagtcatgatggatccacctccatgactc-aacatcttcccataggcccaaactcccaccct-ggggttaa--------atttcagtgtggggtttgaaggggtcaaacaactaaactaaagcagttgtatcttcagcatgttctatggtttctataagagctataactgag
i ponAbe2.chr19                   C 0 C 0
s chlSab2.chr6                    47465771 247 + 50890351 ccaagctctttttaagaaccaactctccagagtactaatagagggagaacgtgctaaccctgtcgtgtggggcagcattaatctattcatgatggatccacccccatcacccaaatacctcctgataagaccaacttcccacactcagggttaa--------atttcaaagtgaaacttcggggggtcaaatatccatacgatagcaggtgtctcatcggcacattctgtggttattatgaaaactataactgag
i chlSab2.chr6                    C 0 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I
e papAnu2.chr19                   47751973 20017 + 51301725 I
e macFas5.chr19                   55651773   0 + 59248254 C
e rheMac3.chr19                   60529319   4 + 64156825 I

a score=1763.000000
s hg38.chr19_GL949751v2_alt         784247 2 +  1002683 aa
s panTro4.chr19                   59782066 2 + 63644993 aa
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56696444 2 + 60714840 aa
i ponAbe2.chr19                   C 0 C 0
s macFas5.chr19                   55651773 2 + 59248254 ag
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47771990 2 + 51301725 AG
i papAnu2.chr19                   I 20017 C 0
s chlSab2.chr6                    47466018 2 + 50890351 aa
i chlSab2.chr6                    C 0 I 24115
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457 0 -    21488 I
e rheMac3.chr19                   60529319 4 + 64156825 I

a score=1664394.000000
s hg38.chr19_GL949751v2_alt         784249 981 +  1002683 agcaggagaaagctgggtcTCCCGCCATCAGGCTGCTTGTCCTAAGGAGATGTTCCATGTGGTTACCTGTCAATCAAGAAAT--GAGACAATCCATAAAGAGGAACTGCTATGATTAGCTTCTTATTGGATTCCCATCTTCCTCCAGGTATCTGCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGtcatcttcctcttcatcctcctcctcttctttctcctTTATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCACGCGGGTGTGTGTTCCTCACTGGCAGGATGGTCCCTGGCCCAAGGGAGGAGCCACAGAGGCAGGGCTTTCTAGAGAGAGCACCAGACAACCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGGTTCTGAACTGTATCCTCACATCCCCTGCAGCCACTGACATCC---AGAAGCTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGCCAATTGAGAGCACTTCATGGGATGGGGTCTTGAACTCAGAGAGATAGAATGTCTGAGTCTGGATGTTGGCAGCTGAAGAGCCTCAGGCACCTACAGCCTCCCCCTGTGGGTTGGTGTCTGCCCATGAAATGAGGACCCAGAAGGGCCCTCCAAGCGGTTTTGATGACTTCCGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAGGCAGGTAGGTCCTCCTCGGCCCAGCCTCACGGATACAGTCTTA-TCCCTAATAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGATGTACGCACAGTTGGATCACTGCGTTTTCATACAGAGAAAAATCAGTCGCCCTTCTCAGAGGCCCAAGACACCCCTAACAGATACCAG
s panTro4.chr19                   59782068 981 + 63644993 agcaggagaaagctgggtcTCCTGCCATCACGCTGCTTGTCCTAAGGAGATGTTCCATGTGGTTACCTGTCAATCAAGAAAT--GAGACAATCCATAAAGAAGAACTGCTATGATTAGCTTCTTATTGGATACCCATCTTCCTCCAGGTATCCGCAGACACCTGCACATTCTGATTGGGACCTCAGTGGTCATCATCCTCTTCATCATCATCCTCTTCTTTCTCCTTCATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACGAAGCAGAGGCCAGAGAGCTCAGTGCCGTGTGGGGAAGCAGGATGGGAGCAGGCACGTGTGTGTTCCTCACTGGCAAGATGGTCCCTGGCCCAAGGCAGGAGCCACAGAGGCAGGGATTTCTAGAGAGAGCACCAGACAACCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGGTTCTGAACTGTATCCTCACATCCCCTGCAGCCACTGACATCC---AGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGCCAATTGAGAGCACTTCATGGGATGGGGTCTTGAACTCAGAGAGATAGAATGTCTGAGTCTGGATGTTGGCAGCTGAAGAGCCTCAGGCACCTACAGCCTCCCCCTGTGGGTTGGTGTCTGCCCATGAAATGAGGACCCAGAAGGGCCCTCCGAGTGGTTTTGAAGACTTCCGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAGGCAGGTAGGTCCTCCTCAGCCCAGCCTCACGGATACAGTCTTA-TCCCTAATAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTTTCATACAGAGAAAAATTGGTCGCCCTTCTCAGAGGCCCAAGACACCCCTAACAGATACCAG
i panTro4.chr19                   C 0 C 0
s ponAbe2.chr19                   56696446 986 + 60714840 agcaggagaaagctaggtctcccgccatctgggtgcttgtcctAAGGAGACGTTCCACGTGGTTACCTGTCAATCAAGAAATGAGAGATAATCCATAAAGAGGAACTGCTATGATGAGCTTCTTATTGGATTCCCATCTTCCTCCAGGTATCCGCAGACACCTGCATGTTCTGACTGGGACCTCAGTGGTCATCATCCTCTTCATCCTCCTCCTCTTCTTTCTTCTTTATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACAGAGCAGAGGCCAGAGAGCTCAGGGCCATGTGGGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACCAGCAGGATGGTCCCTGGCCCAAGGCAGGAGCCTCAGAAGCAGGACTTTCTAGAGAGAGCAGCAGACACCCTGCCCCTGCCTTCAGCTCACAGACCATTGCCTGGTTCTGAACTGTATCGTCACATCCCCTGCAGCCACTCACTTCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCACCGGGATGGGAACACAGAGCTATTCATGGGAT-GGTCCTTGAGCTCAGAGAGAGAGAATGTCTGAGTCTGGATGTTGGCAGCTGAGGAGCCTCAGGCACCTACGGCCTCCCCCTGTGTGTTGGTGTCTGATCATGAAATGAGGACCCAGAAGTGCCCTCCCAGGTGTTTTGTTGACTTCCGTCTCCTACAGATGCTGCTGTAACGGACCAAGAGCCTGCGGGGGACAGAACAGTGAACACGGAGGTAGGTCCTCCTCGGCCCAGCCTCGTGGATCAAGTCTTATTCCCTAATAGTCCTGAAAAATGTGAGCACCCTCCCTCACTCAGCATTTCCCTCTCTCCAGGACTCTGATGAACAAGAGCCTCAGGAGGTGAGATACGCACAGTTGGATCACTGCGTTTTCACACAGAGAAAAATCACTCGCCCTTCTCAGAGACCCAAGACACCCCCAACAGACACCAT
i ponAbe2.chr19                   C 0 C 0
s rheMac3.chr19                   60529323 982 + 64156825 agcaggagaaAGCTGGGTCTCCCGACATCAGGCCGCTTGTCCTAAGGAGACATTCCACATCGTTACCTGTCAATCAAGAAACGAGAGACAATCCATAACAAGGAACTGCTATGATTAGCTTCTTATTGGAGTCTTTTCTTCCTCCAGGTAACCCTAGACACCTGCATGTTCTGATTGGGACCTCAGTGGTCATGATCCTCTTCA---CCATCTTCTTCTTTCTCCTGCATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACGAAGCAGAGGCCAGAGACCTCAGGGTCGTGTGGGGAAGCGGGATGGGAGCACGCGGGTGTGTGTTCCTCACCGGCAGGATGGTCTCTGGCCCAAGGCAGAAGCCACAGAGGCAGAGCTTTCTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCGTGACAGGCAGAAAGTGGGAGGCAGAATCAATGGGATGGAAATTGAGAGCCATTCATGGGAAGGGGTCTTGAACTCAGAGAAACAGAATGTCTGAGCCTCGCTGTTGGCAGCTGAGGCACCTCAGGCATCTACGGCCTCCCCCTGTGTGTTGTAATCTGCACATGAAATGAGGACCCAGATGGGCCCTCCCAGCTGTTTTGATGACTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTCGGCCCAGCCTCGTGGATCGAATCTTATTCCCTACTAGTCCTGAAGAATGTGAG-CCCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACTCTGATGAACAAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACCGCGTTCTCACACAGGGAAAAATCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAG
i rheMac3.chr19                   I 4 C 0
s macFas5.chr19                   55651775 982 + 59248254 agcaggagaaAGCTGGGTCTCCCGCCATCAGGCCGCTTGTCCTAAGGAGACATTCCACATGGTTACCTGTCAATCAAGAAATGAGAGACAATCCATAAGAAGGAAATGCTATGATTAGCTTCTTATTGGAGTCTCTTCTTCCTCCAGGTAACCCCAGACACCTGCATGTTCTGATTGGGACCTCAGTGGCCATGATCCTCTTCA---CCATCTTCTTCTTTCTCCTGCATCGCTGGTGCTCCAACAAAAAGAGTAAGTCTCACGAAGCAGAGGCCACAGACCTCAGGGCCGTGTGGGGAAGCGGGATGGGAGCACGCAGGTGTGTGTTTCTCACCGGCAGGATGGTCTCTGGCCCAAGGCAGGAGCCACAGAGGCAGAGCTTTCTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTCAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGATAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGAAATTGAGAGCCATTCATGGGAAGGGGTCTTGAACTCAGAGAAACAGAATGTCTGAGCCTCGCTGTTGGCAGCTGAAGCACCTGAGGTGTCTACGGCCT-CCCCTGTGTGTTGGGCTCTGCACATGAAATGAGGACCCAGAAGTGCCCTCCCAGCTGTTTTGATGCCTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTCGGTCCAGCCTCATGGATCGAATCTTATTCCCTACTAGTCCTGAAGAATGTGAGCCCCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACCCTGATGAACAAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGCGTTCTCACACAGGGAAAAATCACTTGCCCTTCTCAGAGGCCCAGGAGACCCCCAACAGATACCAG
i macFas5.chr19                   C 0 C 0
s papAnu2.chr19                   47771992 982 + 51301725 AGCAGGAGAAAGCTGGGTCTCCCGCCATCAGGCCGTTTGTCCTAAGGAGACATTCCACAAGGTTACCTGTCAATCAAGAAACGAGAGACAATCCATAACAAGGAACTGCTATGATTAGCTTCTTATTGGAGTCTCTTGTTCCTCCAGGTAACCCCAGACACCTGCACGTTCTGATTGGGACCTCAGTGGTCATGATCCTCTTCA---ccatcttcttctttctcctgcatCGCTGGTGTTCCAACAAGAAGAGTAAGTCTCACGAAGCAGAGGCCACAGACCTCAGGGCCGTGTAGGGAAGCGGGATGGGAGCACGCAGGTGTGTGTTCCTCACCGGCAGGATGGTCTCTGGCCCAAGACaggagccacagaggcagagctttcTAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCCCAGACCATTGCCTGATTCTGAACTGTATCCTCATGT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGAAATTGAGAGCCGTTCATGGGGAAGGGTCTTGAACTCAGAGAGACAGAATGCCTGAGTCTGGCTGTTGGCAGCTGAGGGACCTCTGGCACCTACAGTCTCCCGCTGCGTGTTGGGCTCTGCACATGAAATGAGGACCCAGACGTGCCCTCTCAGCTGTTTTGATGACTTTTGTCTCCTACAGATGCTGCTGTAATGGACCCAGAGCCTGCGGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTCGGCCCAGCCTCGTGGATACTGCTTTATTCCCTAATAGTCCTGAAGAATGTGAG-CCCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACTCTGACGAACCAGACCCTCAGGAGGTGACATACGCACAGTTGGATCACTGGGTTCTCACACAGGGAAAAACCACTCGCCCTTCTCAGAGGCCCAAGACACCCCCAACAGATACCAG
i papAnu2.chr19                   C 0 C 0
s chlSab2.chr6                    47490135 981 + 50890351 AGCAGGAGGAAGCTGGGTCTCCCGCCATCAGGCCGCTTGTCCTAAGGAGACATTCCACATGGTTACCTGTCAATCAAGAAACGAGAGACAATCCATAAAAAGGAACTGCTATGATTAGCTTCTTATTGGAGTCTCTTCTTCCTCCAGGTAACCCCAGACACCTGCCTGTTCTGATTGGGACCTCAGTGGTCATGATCCTCTTCA---CCATCTTCTTCTTTCTCCTGCATCGCTGGTGCTCCAACAAAAAGAGTAAGTGTCATGAAGCAAAGGCCACAGATCTCAGGGCCGTGTGGGGAAGCGGGATGGGAGCACGCAGGTGTGTGTTCCTCACCAGCAGGATGGTCTCTGGCCCAAGGCAGGAGCCACAGAGGCAGGGATTTCGAGAGAGAGCACCAGACACCCTGTCCCTGCCTTCAGCTCACAGACCATTGCCTGATTCTGAACTGTATCCTCACAT-CCCTGCAGCCACTGACATCCAGGAGAAGGTTCCATGACAGGCAGAAAGTGGGAGACAGAATCAATGGGATGGAAATTGAGAGCTATTCATGGGAAGGGGTCTTGAACT-AGAGAGACAGAATGTCTGAGCCTGGCTGTTGGCAGCTGAGGGACCTCGGGCACCTACGGCCTCCCCCTGTGTGTTGGGCTCTGCACATGAAATGAGGACCCAGACGTGCCCTCCCAGCTGCTTTGATGCCTTTTGTCTCCTACAGATGCTGCTGTAATGGACCAAGAGCCTACGGGGGACAGAACAGTGAACAGGGAGGTAGGTCCTCCTTGGCCCAACCTCATGGATACTGCCTTATTCCCTAATAGTCCTGAGGAATGTGAG-CCCCTCCCTCACTCAACATTTCCCTCTCTCCAGGACTCTGATGAACCAGAGCCTCAGGAGGTGACATACGCACAGTTGGATCACTGTGTTCTCACACAGGGAAAAATCACTCACCCTTCTCAGAGGCCCAAGAGACCCCCAACAGATACCAG
i chlSab2.chr6                    I 24115 C 0
e calJac3.chr22                   45773030 96928 + 49145316 I
e nomLeu3.chr10_GL398297_2_random    21457   0 -    21488 I

a score=2099369.000000
s hg38.chr19_GL949751v2_alt    785230 939 +   1002683 CGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCACGAGCACCACAGTCAGGTCTTGAGGGGGTTTTCTAGGGAGACAACAGCCCTGTCTCAAAACCAGGTTGCCAGATCCAATGAACCAGCAGCTGGAATCTGAAGGCATCAGTCTGCATCTTAGGGGATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTACAAATGCCTAAGGTCGCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAAGTATCTATTTCacttgacccctgcccacctctccaacctaactggcttacttcctagtcctacttgaggctgcaatcacactgaggaactcacaattccaaacatgcaagaggctccctcttaacacggcacttacacacttgctgttccaccttccctcatgctgttccacctcccctcAGACTATCTTTCAGCCTTCTGTCATCAGTAAAATTTATAAA-TTTTTTT-TATAACTTCAGTGTAGCTCTCTCCTCTTCAAATAAACATGTCTGCCCTCATGGTTTCGATAATGTGACTCTTTATTCGCCAAAAGTTTCCAGTGTTATCATTACTATGTCCATATAACCTGATATGTTCTCTACTGGGTtctcagccctggactctgagcttctggaagcagggtggagcctcatttgtctctgggactccaatttccatccaaagatgcagcacataggaggtTCCAAGGATCGTGAATCACATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCAAGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCATCtccacagggacacatgtcaacacatcatctttcatactataaatatacagtcgctcctccatatctgtgg
s panTro4.chr19              59783049 938 +  63644993 CGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCACGAGCACCACAGTCAGGCCTTGAGGGGGTTTTCTAGGGAGACAACAGCCCGGTCTCAAAACCAGGTTGCCAGATCCAATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGGATCGCTCTTCCTCACACcacgaatctgaacatgcctctctcttgcttacaaatgcctaaggtcgccactgcctgctgcagagaaaacagactcctttgcttagcccacaagtatctatttcacttgacccctgcccacctctccaacctaactggcttacttcctagt-ctacttgaggctgcaatcacactgaggaactcacaattccaaacatgcaagaggctccctcttaacacggcacttagacacgtgctgttccaccttccctcatgccgttccacctcccctcagactatctttcagccttctgtcatcagtaaaatttataaa-ttttttt-tataacttcaatgtagctctctcctcttcaaataaacatgtctgccctcatggttttggtaatgtgactctttattcactgagagtttccagtgttatcattactatgtccatataacctcatctgttctccactggtttctcacccctggactctgagcttctggaagcagggtggagcctcatttgtctctgggactccaATTTCCATCCAAAGATGCAGCACGTAGGAGGTTCCAAGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCAAGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATGTCAACGCATCATCTTTCATACTATAAATATAcagtcgctcctccatatctgtgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56697432 936 +  60714840 CGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCCAAAGTTGTCTCCTGCCCATGAACACCACAGTCAGGCCTTGAGGGGGTCCTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGGTTGCCAGCTCCAATGTACCAACAGCTGGAATCTGAAGGCGTCAGTGTGCATCTTAGGGCATCGCTCCTTCTCACACCACAAACCTG---GTGTCTCTCTCTTGCTTACCAATGTCTATAGTTCCCACTGCCTGCTGGAGAGAAAACACACTCCTTTGCTTAACCCACAATTCTCTATTTCacttgacccctggccacctctccagcctaactggcttacttcctagt-ctacttgaggctgcgatcacactgaggaactcacaattccaaacatacaagaggctccctcttaacatggcacttagacacgtgctgttccaccttccctcatgctgttccacctcccctcAGACTATCTTTCAGCCTTCTGTTGGCAGTAAAACttataaa-tttttttaaataatttCAATGTAGCTCTCTCCTTTTCAAATAAACATGTCTGCCCTCATGGTTTCGGTAATGTGACTCTTCTTTTGCCAAAAGTTTCTGGTGTTATCATTTCTATGTCCATATAACCCCATCTGTTCTCCACTGGGTtctcacccctggactccgagcttctggaagcagggtggagcctgatttgtctctgagactccaatttccttccaaagatgcagcacataggaggtTCCAAGGATCGTGAATCACATGAACAAGTGATATTCTTACTCTCTGCAGACCTGCAAAGCCGGCAGAGTCATTCCACGATGAAACATTTGCAGAGTCACAGGCCTTGTTAGTCTCATCTCCACGGGGACACATATCAACACATCATCTTTCATACTATAAATATACAGTCGCTCCTCCATATCTGTGG
i ponAbe2.chr19             C 0 T 14449
s nomLeu3.chr10             103247882 935 - 106955855 CGTGTACACGGAACTTCCAAATGCTGATCCCAGATCCAAAGTTGTCTCCTGCCCACAAGCACCACAGTCAGGCCTTGAGGGGGTTTTCTAGGGAGACAACAGCCCTGTCTCAAACCCAGCTTGCCAGCTCCCATGTACCAGCAGCTGGAATCTGAAGGCATCAGTCTTCATCTTAGGGGATTGCTCTTCCTCACACCACAAATCTG---GTGTCTCTCTCTTGCTTACAAATGTCTATGGTTCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCTATTTCACTTGacccctgcccacctctccaacctaactggcttacttcctagtcctacttgaggctgcgatcacactgaggaactcacaattccaaacacacaagaggctccctcttaacacggcacttagacacgtgctgttccaccttccctcatgctgttccacctcccctcagactatctttcagtcttctgtcatcagtAAAATTTATAAA-TTTTTTT--ATAATTTCAATGTAGCTCTCTCCTCTTCAAATAAACATGTCTGCCCTCATGGTTTCGGTAATGTGACTCTTTTTTGGCTGAAAGAAACCGGTGTTATCATTACTATGTCCATATAACCCGATATGTTCTCCACTGGGTTCTCAcccctggactctgagcctctggaagcagggtggagcctgatttgtctctgggactccaatttccttccaaagatgcagcacataggaggttccaaGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGTCATTCCACCATGAAACATTTGTAGAGTCACAGGCCTTGTTAGTCTCATCTCCACGGGGACACATATCAACACATCATCTTTCATACTAGAAATATAcagtcgctcctccatatctgtgg
i nomLeu3.chr10             M 8807 C 0
s rheMac3.chr19              60530305 936 +  64156825 CGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCGAAAGTTGTCTTCTATCCATGAGCACCACCGTCAGGCCTTGAAGGGGTCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCGGCTTCACAGCTCCAATGTACCAGCAGCAGGAATCTGAAGGTGTGAGTCTGCATCTTAGGACATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTCGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCActtcacttgacccctgcccacctctccaacct-actggcttacttcctagtcctactggaggctgtgatcacactgaggaactcacaattccaaacatacaagagactccctgttaacacagcacttagacacgtgctgttccatcttccctcatgctgttccacctgccCCCAGACTATCTTTCAGCCCT-TGGCAGCAGTGAAACTTATAAA-TTTTTTT--ATCATTTCAACGTAGCTCTCTCCTCTTCAAATAAACACCTCTACCCTCATCCTTTAGGTAATGTGACTCTTTATTCGCTGAAAGTTTCTGGTGTTATCATTACTATGTCCATATAGCCCCATATGTTCTCCAATGGTTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAGAGTGGAGCCTGGTTTCTGTCTGGAACTCCAATTTCCATCCAACGATGCAGCGCATAGGAGGTTGCAAGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACAGGGACACATGTCAACACATCATCCTTCATACTATAAATACAcagtcgctcctccgtatctgagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55652757 935 +  59248254 CGTGTACACGGAACTTCCAAATGCTGAGCCCAGATCGAAAGTTGTCTTCTATCCATGAGCACCACCGTCAGGCCTTGAAGGGGTCTGCTAGGGAGACAACAGTCCTGTCTCAAAACCGGCTTCACAGCTCCAATGTGCCAGCAGCAGGAATCTGAAGGTGTGAGTCTGCATCTTAGGGCATCGCTCTTCCTCACACCACGAATCTGAACATGCCTCTCTCTTGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCActtcacttgacccctgcccacctctccaacct-actggcttacttcctagtcctactggaggctgtgatcacactgaggaactcacaattccaaacatacaagagactccctgttaacacagcacttagacacgtgctgttccatcttccctcatgctgttccacctcccctcAGACTATCTTTCAGCCCT-TGGCAGCAGTGAAACTTATAAA-TTTTTTT--ATCATTTCAATGTAGCTCTCTCCTCTTCAAATAAACACGTCTGCCCTCATCCTTTAGGTAATGTGACTCTTTATTGGCCGAAAGTTTCTGGTGTTATCGTTACTATGTCCGTATAGCCCCGTATGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAG-GTGGAGCCTGATTTCTGTCTGGAACTCCAATTTCCATCCAACGATGCAGCGCATAGGAGGTTGCAAGGATCGTGAATGAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACATTTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACAGGGACACATGTCAACACATCATCCTTCATACTATAAATACAcagtcgctcctccgtatctgagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47772974 917 +  51301725 CGTGTACACGGAGCTTCCAAATGCTGAGCCCAGATCGAAAGTTGTCTTCTATCCATGAGCACCACCGTCAGGCCTTGAAGGGGTCTTCTAGGGAGACAacagccctgtctcaaaaccggCTTCACAGCTCCAATGTACCAGCCGCAGGAATCAGAAGGTGTGAGTCTGCATCTTAGGGCATTGCTCTTCCTCAGACCACGAATCCAAACGTGCCTCTCTCTCGCTTACAAATGTCTGTGGTTCCCACTGCCTGCTGCAGGGAAAATACACTCCTTTGCTTAGCCCACAATTCTCCATTTCACTTGacccctgcccacctctccaaTCTAACTGGCTTACTTCCTAGTCCTACTGGAGGCTGTGATCACACTGAGGAACTCACAGTTCCAAACACACAAGAGACTCCCTGTTAACACAGCACTTAGACGCATGCTGTTCCATCTCCCCT--------------------CAGACTATCTTTCAGCCTTCTGTCAACAGTGaaacttataaatttttttt--atcatttcaatgtAGCTCTCTCCTCTTCAAATAAACACCTCTGCCCTCATCCTTTAGGTAATGTGACTCTTTATTCGCCGAAAGTTTCTGGTGTTATCATTACTATGTCCATATAACCCCATATGTTCTCCACTGGGTTCTCACCCCTGCAATCTGAGCTTCTGGAAG-AG-GTGGAGCCTGATTAGTGTCTGGGACTCCAATTTCCATCCAACGATGCAGCACGTAGGCGGTTTCAAGGATCAGGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACACCTGTAGAGTCATAGGCCTTGTTGGTCTCATCTCCACGGGGACACATGTCCACACATCATCTTTCATACCATAAATACACAGTCGCTCCTCCAGACCTGTGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47491116 928 +  50890351 CATGTACATAGAACTTCCAAATGCTGAGCCCAGATCGAAAGTTGTCTTCTATCCACGAGCACCACCGTCAGGCCTTGAAGGGGTCTTCTAGGGAGACAACAGCCCTGTCTCAAAACCAGCTTCACAGCTCCAATGTACCAGCAGCAGGAATCTGAAGGTGTGAGTCTGCATCTTAGAGCATCGCTCTTCCTCACACCACGAATCTGAACGTGCCTCTCTCTCGCTTACAAATGTCTAAGGTCCCCACTGCCTGCTGCAGAGAAAACACACTCCTTTGCTTAGCCCACAATTCTCCATTTCacttgaccccagcccacctctccaaccttactggcttacttcgtagtcctactggaggctgcagtcacactgaggagctcacaattccaaacatacaagaggctcccttttaacacggcacttagactcatgctgttccaccttccctcatgctgttccacctccccccagactatctttcagccttcTGTCAACAGTGAAACTGAAAAA-TTTTTTT--ATCATTTCAATATAGCTCTCTCCTCTTCAAATAAACACGTCTGCCCTCATCCTTTAGGTAATGTGACTCTTTATTCGCCGAAAGTTTCTGGTGTTATCGTTACTATGTCCGTA--------TATGTTCTCCACTGGGTTCTCACCCCTGGACTCTGAGCTTCTGGAAGCAG-GTGGAGCCTGATTTCTGTCTGGAACTCCAATTTCCATCCAACGATGCAGCGCATAGGAGGTTGCAAGGATCGTGAATCAGATGAACAAGTGATATTCTTACTCTCTGCAGACCTGGAAAGCTGGCAGAGCCATTCCAAGATGAAACATCTGTAGAGTCATAGGCCTTGTTAGTCTCATCTCCACGGGGACACATGTCCACACATCATC-TTCATACTATAAATACAcagtcgctcctccagacctgtgg
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=646721.000000
s hg38.chr19_GL949751v2_alt    786169 302 +   1002683 ggtttacaggtgtttattgaaccaaatataaatcaaaaatattcagagaaaaaatccacaaagttccaaaaagcaaaaatactatattgtgtggacacaagtgaggtggtgtgtaggctgtatcaggaattataagtaatctagagatgatttcatgtatacaggaggatgtgcatgggttatatgcaaatgctgtgccatttcatgcaacaggcttgagcatctgcagattttggtgtctg-gtagggaggggggtttcctggaaccaatcacccatgaatagtgaaggactactgtatata
s panTro4.chr19              59783987 299 +  63644993 ggtttacaggtgtttattgaaccaaatataaatcaaaaatattcagagaaaaaatccacaaagttccaaaaagcaaa---actatatggtatggacacaagtgaggtggtgtgtaggctgtatcaggaattataagtaatctagagatgatttcatgtatacaggaggatgtgcatgggttataggcaaacgctgtgccatttcatgcaagaggcttgaacacctgcagattttggtgtctg-gtagggaggggggtttcctggaaccaatcacccatgaatagtgaaggacaactgTATATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56683919 289 +  60714840 ggtttacaggtgtttatggaaccaaatataaatcaaaaatattcagagaaaaaatccacaaagtttcaaaaagcaaa---actatgttgaatggacacaaataaagctgtgtgtgggctgtatcagga---ataagtaatcaagagatgatttcatgtatacaggaggatgtgcatgggttatttgcaaacgctgtgccatttcatgtaagaggcttgagcatctgcagattttgatatctgagtggaga--------tcctgaaaccaatcacccacaaatagtgagggatgactgTATATA
i ponAbe2.chr19             T 14449 I 14268
s nomLeu3.chr10             103248817 299 - 106955855 ggtttacaggtgtttattgaaccaagtataaatcaaaaatagtcaaagaaaaaatccacaaagttccaaaaagcaaa---actatattgtatggacacaagtgaggtggtgtgtaggctgtatcaggaattacaagtaatcaagagatgatttcatgtatacaggaggatgtgcatgggttatatgcaaacgctgtgccatttcatgcaagatgcttgaacacctgccgattttggtgtctg-gtagggagggggttttcatggaaccaatcacccatgaatagtgaaggacaactgTATATA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60531241 292 +  64156825 ggtttacaggtgtttattgagccaactataaatcaaaaatattcagagaaaaaatccacaaagttccaaaaagcaaa---actatgttgaatggacacaaacggaatggtgtgtaggctgtatccggaattataagtaatctagagatgatttcatgtacacaggaggatgagcatgggttatatgcaaacgctgtaccattttatgtaagaggcttgagcacctgcaggttttggtgtcagagcagaga--------tcctgaaaccaatcacccgcgaatagtgaaggatgactgTATATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55653692 292 +  59248254 ggtttacaggtgtttattgagccaactataaatcaaaaatattcagagaaaaaatccacaaagttccaaaaagcaaa---actatgttgaatggacacaaacggaatggtgtgtaggctgtatccggaattataagtaatctagagatgatttcatgtacacaggaggatgagcatgggttatatgcaaacgctgtaccattttatgtaagaggcttgagcacctgcaggttttggtgtcagagcagaga--------tcctgaaaccaatcacccgcgaatagtgaaggatgactgTATATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47773891 292 +  51301725 GGTTTACAGGTGTTTGTTGAGCCAACtataaatcaaaaatattcagagaaaaaatccacaaagttccaaaaagcaaa---actatgttgaatgaatacaaatgAAGCAGTGTGTAGGCTGTATccggtattataagtaatctagagatgatttcatGGACACAGGAGGATGAGCATGGGTCATATGCAAACGCTGTGCCATTTCATGTAAGAGGCTTGAGCACCTgcaggttttggtgtcagagcAGAGA--------TCCTGAAACCAATCACCCGCGAATAGTGAAGGACgactgtatata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47492044 292 +  50890351 ggtttacaggtgtttgttgagccaactataaatcaaaaatattcagagaaaaaatccacaaagtttcaaaaagcaaa---actatgttgaatggacacaaatgaagtggtatgtaggctgtgtcaggaattataagtaatctagagatgatttcatggacacaggaggatgagcacaggtcatatgcaaacgctgtgccatttcatgtaagaggcttgagcacctgcaggttttggtgtctgagcagaga--------tcctgaaaccaatcactcacgaatagtgaaggatgacGGTATATA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=2689687.000000
s hg38.chr19_GL949751v2_alt    786471 1172 +   1002683 attttcattcatcaattTTATAAATAAATCATCAAAATGTATGATAATAAGATAAAA-AATTAGCAGTGTTTTtatggtgtgaaaataagcttagatttattttttcctgcttgtaaccctctggtccaatgttatttactgagaagacattctattccaccttaatccgcatggcagcctctgtcaactataaaaggactgtgtgtacacagatgtattttacacactcttttctgctcagtggctctctgtgtccactctcatgaggatgctgcactttatgtggccttatagaaccccttaaaatttggcagcctgaatcctctaatttctccttcctctttaagattgccattattattattattggctatttgcttttccatgtaaatttgtaatcatttttctcatttccaccaaaaacaatgcttgtaattttgttgtgactcccttacatctacaggt-aagttctgtcctatagaaacataatgcaaaccacatgcattctttcaaacttgctagtatccaaattaaaaagctaacaagaaacagataaaattaatttaagttaacccaatggacccaaaatattattaacccaacaGACCCAAAATATTAACCTAATAGATCCAAAATATTATTTTATTATACAAGTAGACTCAAAATATTATCATTTCAACATGTAATCATGTGTCATCTTGGAAAACATCAGATCCCTGTCTAGGTGGGCAAAGATTTTTCTTCGTAATATCTCATTTCCACATTTCCACTTGGCACAGAAACTGCCCCCAAGGCTCAGGATACTAAGATGCAGTAGGAATGGGTAGATGTATCTGGAGGAAAGTGACTGAATGAAATTGAGACATCAGAGTCTGGGGAACTCACTAGAACTAcagggacagtgtgggggagggaattgggagatgttgatcaaaggatacaaactatcaggtattcaggaggaatgggtctgaagatctcttgtacagctttgccactatggttgacaatactgtactctatacttgaaatttaccaggaaagtagatttttttttttaaatatggaacacttcacgaatttgcgtgtcattcttgcgcaggggccatgctagttttctctgtatcgttccaattttagtatatgtgctgccgaggcaagcatgggagagt
s panTro4.chr19              59784286 1168 +  63644993 ATTTTCATTCATCAATTTTAGAAATAAATCATCAAAATGTATG---ATAAGATAAAA-AATAAGCAGTGTTTTTATGGTGTGAAAATAACCTTagatttattttttcctacctttaaccctctggtccagtgttatttattgagaagacattctattccaccttaacccgcatggcagcctctgtcaactataaagggactgtgtgtacacagatgtattttacacactcttttctgctcagtggctctctgtgtccactctcatgaggatgctgcactttatgtagccttatagaaccccttaaaatttggcagcctgaatcctctaatttctccttcctctttaagattgccattattattattattggctatttgcttttccatgtaaattcgtaatcatttttctcatttccaccaaaaacaatgcttgtaattttgttgtgactcccttacatccacagat-aagttctgtcctatagaaacacaatgcaaaccacatgcattctttcaaacttgctagtatccaaattaaaaagctaacaagaaacagacaaaattaatttaagttaacccaatggacccaaaatattattaacccaacaGACCCAAAATATTAACCTAATAGATCCAAaatattattttattatccaagtagactcaaaatattatcatttcaacatgtaatcGTGTGTCATCTTGGAAAATATCAGATCCCTGTCTAGGTGGGCAAAGATTTTTCTTCGTAATATCTCATTTCCACATTTCCACTTGGCACAGAAACTGCCCCCAAGGCTCAGGATAATAAGATGCAGTAGGAATGGGTAGACGTATCTGGAGGAAAATGACTGAATGAAATTGAGACATCAGAGTCTGGGGAACTCACTAGAACTAcagggacagtgtgggggagggaattgggagatgttgatcaaaggatacaaagtttcaggtattcaggaggaatgggtctgaagatctcttgtacagctttgccactatggttgacaatactgtactctatacttgaaatttaccaggagagtaga-tttttttttaaaatacggaacgcttcacgaatttgcgtatcattcttgcgcaggggccatgctagttttctctgtatcgttccaattttagtatatgtgctgccgaggcaagcacgggagagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56698476 1170 +  60714840 atttttatttatcaatttttgaaataaatCATCAAAATGTACAATAATAAGATAAAA-AATAAGCAGTGTTTTtatggtgtgaaaataagcttagatttattttttcctacatgtaaccctctggtccaatgttctttattgagaagatattctattccaccttaacccacacggcagcctctgtcgactataaagggactgtgtgtacacagatgtattttacacactcttttcggctcagtggctctctgtgtccactctcatgaggatgctgcactttatgcagccttatagatccccttataatttggtagcctgaatcctctaatttctccttcctctttaagattgccattattattattattgactatttgcttttccatgtaaatttgtaatcatttttctcatttccaccaaaaataatgcttgtaattttgttgtgactcccttaaatctacagat-aaattctgtgctatagaaacataatgcaaaccacatacattcttttaaatttgctagtat-caaattaaaaagccaacaagaaacagataaaattaatttaagttaacccaatggacccaaaatattattaccccaataGACCCAAAATATTAACCTAATAGATCCAAaatattattttattatcccaatagactcaaaatattatcatttcaacatgtaaccaTGTGTCATCTTGGAAAATATCAGATCCCTGTCTAGGTGGGCAAAGATTTTTCTTCGTAATATCTCATTTCCACATTCCCACTTGGCACAGAAACTGCCCCCAAGGCTCAGGATAATAAGATGCAGTAGGAATGGGTAGATGTATCTGGAGGAAAATGACTAAATGAAATTGAGACATCAGGGTTTGGGGAACTCACTAGAACTAcagggacagtgtgggggagggaattgggagatgttgatcaaaggatacaaagtttcaggtattcaggaggaatgggtctgaagatctcttgtacagcttggccactatagttgacaatactgtactctatacttgaaagttaccaggagagtaga-ttttTTTTTTaaatatggaacacttcacaaatctgcgtgtcattcttgcgcaggggccatgctagtcttctctgtatcattccaattttagtatatgtgctgccgagacgagcaTGGGAGAGT
i ponAbe2.chr19             I 14268 C 0
s nomLeu3.chr10             103249116 1159 - 106955855 ATTTTTATTCATCAATTTTAGAAATAAATCATCAAAATA-------ATAAGATAAAA-AATAAGCAGTGTTTTTACGGtgtgaaaataagcttagatttattttttcctatgtgtaaccctctggtccagtgtcatttattgagaagacattctattccaccttaatccacacggcagcctctgtcaactacaaagggactgtgtgtgcacagatgtattttacacactgttttctgctcagtggctgtctgtgtccactctcatgaggatgctgcactttatgtagccttatagaaccccttacaatttggtagcctgaatcctcaaatttctccttcctctttaagattgccattattattattattggctacctgcttttccctgtaaatttgtaatcatttttctcatttccaccaaaaacaatgcttgtaattttgttgtgactccgttaaatctacagat-aagttctgtcctatag-aacataatgcaaaccacatacgttcttttaaatttgctagtatccaaattaaaaagctaacaagaaacagataaaattgatttaagttaacccaatagacccaaaatattattaacccaatagacccAAAATATTAACCTAATAGATCCAAAATATTA-TTTATTATCCAAATAGACTCACAATATTATCATTTCAACATGTAATCATGTTTCATCTTGGAAAATATCAGATCCATGTCTAGGTGGGCAAAGATTTTTCTTCGTAGTATCTCATTTCCACATTTCCACTAGGCACAGAAACTGCCCCCAAGGCTCAGGATGATAAGATGCAGTAGGAATGGGTAGATGTTTCTGGAGGAAAATGACTAAATGAAATTGAGACCTCAGAGTTTGGGGAACTCACTAGAACTAGAGGGAcagtgtgggggagggaactgggagatgttgatcaaaggatacaaagttttaggtattcaggaggaacgggtctgaagatcgctcgtacagctttgccactatagttgacaataccgtactctatacttgaaatttacccggagagtagt----ttttttaaaatatggaacacttcacgaatttgcctgtcattcttgtgcaggggccatgctagtcttttctgtatcgttccaattttagtatatgtgctgccaaggcgagcatgggagagt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60531533 1170 +  64156825 ATTTTTATTCATGAATTTTAGAAATAAATCCTCAAAATGCACAATAATAAGATAAAACAATAAGCAGTGTTTTTACAGTGTGAAAATAAGCTtagatttattttttcctacgtgtaaccctctggtccaatgttatttatggagaagacattcttttccaccttaacccacatggcagcctctgtcaactataaagggactgtgtgtacacggatgtatttt--acactctttcctgcttagtggttctctgtgtccactctcacgaggatgctgcaccttatgtagccttagagaaccccttaacatttggtagcctgaatcctctaatttctccttcctctttaagattgccattattattattataggttatttgcttttccatgtgaatttgtaataatttttctcattttcaccaaaaacaatgcttgtaattttgttgtgactcccttaaatctacagataaagttctgtcctgtagaaacatcatgcaaaccacatacattcttttaaattcgctagaatccaaaataaaaagctaacaagaaacagataaaattaagttaagttaatcccatagacccataatatccttaacccaatagacccaaaatattaACCTAGTAGATCCAAaatattattttataatccaaatagactcaaaatattatcatttcaacatgtaatcaTGTGTCCTCTTGGAAAATATCAGATCCCTGTCTAGGTGGGCAAAGGTTTTTCTTTGTAATATCTAATTTCCACATTTCCACTTGGCGCAGAAACTGCCCCCAAGGTTCAGGATAATAAGAGGCAGTAGGAAGGGGTAGATGTATCTGCAGGAAAATGACTAAATGAAATTGAGACACCAGAGTTTGGGGAACTCACTAGAACTAcagggtcagtgtaggggagggaattgggagatgttgatcaaaggatgcaaagtttcaggtattcaggaggaatcggtctgaaggtctcttacacagcttggccactgtagttgacaacactgtactctatacttgaaatttaccaggagagtaga--ttttTTTTTTaatatggaacacttcacgaatttgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaagtttagtatatgtgctgcggaggcgagcaTGGGAGAGT
i rheMac3.chr19             C 0 I 885
s macFas5.chr19              55653984 1170 +  59248254 ATTTTTATTCATGAATTTTAGAAATAAATCCTCAAAATGCACAATAATAAGATAAAACAATAAGCAGTGTTTTTACAGTGTGAAAATAAGCTTAGATTTATTTTTTCCTACGTGTAACCCTCTGGTCCAATGTTATTTATGGAGAAGACATTCTTTTCCACCTTAACCCACATGGCAGCCTCTGTCAACTATAAAGGGACTGTGTGTACACGGATGTATTTT--ACACTCTTTCCTGCTTAGTGGCTCTCTGTGTCCACTCTCACGAGGATGCTGCACCTTATGTAGCCTTAGAGAACCCCTTAACATTTGGTAGCCTGAATCCTCTAATTTCTCCTTCCTCTTTAAGATTGCCATTATTATTATTATAGGTTATTTGCTTTTCCATGTGAATTTGTAATAATTTTTCTCATTTTCACCAAAAACAATGCTTGTAATTTTGTTGTGACTCCCTTAAATCTACAGATAAAGTTctgtcctgtagaaacatcatgcaaaccacatacattcttttaaattcgctagaatccaaaataaaaagctaacaagaaacagataaaattaagttaagttaatcccatagacccataatatccttaacccaatagacccaaaatattaACCTAGTAGATCCAAaatattattttataatccaaatagactcaaaatattatcatttcaacatgtaatcaTGTGTCCTCTTGGAAAATATCAGATCCCTGTCTAGGTGGGCAAAGGTTTTTCTTTGTAATATCTAATTTCCACATTTCCACTTGGCACAGAAACTGCCCTCAAGGTTCAGGATAATAAGAGGCAGTAGGAAGGGGTAGATGTATCTGCAGGAAAATGACTAAATGAAATTGAGACACCAGAGTTTGGGGAACTCACTAGAACTAcagggtcagtgtaggggagggaattgggagatgttgatcaaaggatgcaaagtttcaggtattcaggaggaatcggtctgaaggtctcttacacagcttggccactgtagttgacaacactgtactctatacttgaaatttaccaggagagtaga--ttttttttttaatatggaacacttcacgaatttgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaagtttagtatatgtgctgcggaggcgagcatgggagagt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47774183 1165 +  51301725 atttttattcatgaattttagaaataaatcctCAAAATGCACAATAATAAGATAAAACAATAAGCAGTGTTTTTACAGTGTGAAAATAAgcttagatttattttttcctacgTGTAACCCTCTGGTCCAATGTTATTTATGGAGAAGACATTCTTTTCTACCTTAACCCACACGGCAGCCTCTGTCAACTATAAAGGGACTTTGTGTACACGGATGTATTTT--ACACTCTTTCCTGCTTAGTGGCTCTCTGTGTCCACTCTCACGATGATGCTGCACCTTATGTAGCCTTAGAGAACCCCTTAACATTTGGTAGCCTGAATCCTCcaatttctccttcctctttaagattgccattattattattataggttatttgcttttccatgtgaatttgtaataatttttctcattttcaccaAAAACAATGCTTGTAATTTTGTTGTGACTCCCTTAAATCTACAGATAAAGTTCTGTCCTGTAGAAACATCATGCAAACCACATACATTCTTTTAAATTCGCTAGTatccaaaataaaaagctaacaagaaacagataaaattaatttaagttAATCCCATAGACCCATAATATCCTTAACCCAATAGACCCAAAATATTAACCTAGtagatccaaaatattattttataatccaAATAGactcaaaatattatcatttcaacatgtaatcatgTGTGCTCTTGGAAAATATCAGATCCCTGTCTAGGTGGGCAAAGGTTTTTCTTTGTAATATCTCATTTCCACATTTCCACTTGGTGCAGAAACTGCCCCCAAGGTTCAGGATAATAAGAGGCAGTAGGAAG-----GATGTATCTGCAGGAAAAtgactaaatgaaattgagacaccAGAGTTTGGGGAACTCACTAGAACTACAGGGTCAGTGTAGGGGAGGGAAttgggagatgttgatcaaaggatgCAAAGTTTCAGGTATTCAGGAGGAATCGGTCTGAAGGTCTCTTATACAGCTTGACCACTATAGTTGACAATACTGTACTCTATACTTGAAATTTACCAGgagaggaga--ttttttttttaatatagaacaCTTcacgaatttgcatgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaagtttagtatatgtgctgcagAGGCGAGCATGGGAGAGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47492336 1155 +  50890351 ATTTTTATTCATGAATTTTAGAAATAAATCCTCAAAATGCACAAT-------------AATAAGCAGTGTTTTtacagtgtg-aaataagcttagatttattttttcctacgtgtaaccctctggtccaatgttatttatggagaagacattcttttccaccttaacccacacggcagcctctgtcaactataaagggattgtgcatacacggatgtatttt--acactctttcctgcttagtggctctctgtgtccactctcacgaggatcctgtaccttaggtagccttagagaaccccttaacattcggtagcctgaatcctctaatttctccttcctctttaagatggccattattattattataggctatttgcttttccatgtgaatttgtaatcatttttctcatttccacc-aaaacaatgcttgtaattttgttgtgactcccttaaatctacagaAAAAGTTctgtcctgtagaaacatcatgcaaaccacatacattcttttaaattcgctagtatccaaaataaaaagctaacaagaaacagataaaattaatttaagttaatcccatagacccataatatccttaacccaatagacccaaaatattaACCTAGTAGACCCAAaatattattttataatccaaatagactcaaaatattatcatttcaacatgtaatcaTGTGTCCTCTTGGAAAATATCAGATCCCTGTCTAGGTGGGCAAAGGTTTTTCTTTGTAATATCTCATTTCCACATTTCCACTGGGCACAGAAACTGCCCCCAAGGTTCAGGATAATAAGAGGCAGTAGGAAGGGGTAGATGTATCTGCAGGAAAATGACTAAATAAAATTGAGACACCAGAGTTTGGGGAACTCACTAGAACTAcagggtcagtgtaggggagggaattgggagacgttgatcaaaagatgcgaagtttcaggtattcaggaggaatcggtctgaaggtctcttacacagcttggccactatagttgacaatactgtactctatacttgaaatctaccaggagaggaga--ttttTTTTTTaatatggaacacttcacgaatttgcatgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaagtttagtatatgtgctgcggaggcgagcaTGGGAGAGT
i chlSab2.chr6              C 0 I 849
e calJac3.chr22              45773030 96928 +  49145316 I

a score=-3699.000000
s hg38.chr19_GL949751v2_alt    787643  7 +   1002683 aga------------------tttt
s panTro4.chr19              59785454 25 +  63644993 agatttttttttttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56699646  6 +  60714840 AGA-------------------TCt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103250275  7 - 106955855 aga------------------tctt
i nomLeu3.chr10             C 0 I 330
s macFas5.chr19              55655154  7 +  59248254 ------------------ccatctt
i macFas5.chr19             C 0 I 841
s papAnu2.chr19              47775348  7 +  51301725 ------------------CAATCTT
i papAnu2.chr19             C 0 I 72
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47493491 849 +  50890351 I
e rheMac3.chr19              60532703 885 +  64156825 I

a score=45239.000000
s hg38.chr19_GL949751v2_alt    787650 187 +   1002683 tttttttttttttttttttgagctggagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcggctcaccgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgccctgctaattttttgtatttttagtag
s panTro4.chr19              59785479 187 +  63644993 tttttttttttttttttttgagctggagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctccagggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgctaccatgcccgggtaatttttggtatttttagtag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56699652 185 +  60714840 tttttttttttttttttctgagacggagtctcgctc--tcgcccacgctggagtgcagtgatgcagtcttggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgaaactacaggctcccgctaccatgcccggctaattttttgtatttttagtag
i ponAbe2.chr19             C 0 I 604
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103250282 330 - 106955855 I
e chlSab2.chr6               47493491 849 +  50890351 I
e papAnu2.chr19              47775355  72 +  51301725 I
e macFas5.chr19              55655161 841 +  59248254 I
e rheMac3.chr19              60532703 885 +  64156825 I

a score=13334.000000
s hg38.chr19_GL949751v2_alt    787837 141 +   1002683 agacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtactgggattacaggcatgagccaccacgcccggctgggagagtagatcttaagggtcctcacc
s panTro4.chr19              59785666 141 +  63644993 agacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggctgggagagtagatcttaagggtcctcacc
i panTro4.chr19             C 0 C 0
e ponAbe2.chr19              56699837 604 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103250282 330 - 106955855 I
e chlSab2.chr6               47493491 849 +  50890351 I
e papAnu2.chr19              47775355  72 +  51301725 I
e macFas5.chr19              55655161 841 +  59248254 I
e rheMac3.chr19              60532703 885 +  64156825 I

a score=57475.000000
s hg38.chr19_GL949751v2_alt    787978 294 +   1002683 acaaaaaaaaaaa-------aaagaaagaaagaaaaagaaaccata---------------------------ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaagacgggcagatcacttgaggtcaggagttcaagaccagcatggccaacatggtgaaaccctgtctctactaaaaatgc-aaacattagccaggcgtggtgacacaagcctgtaatcccagctactcag-gaggctgaggcacgagaattgctggaacctggga-gcggaggttgcagtgagccaagatggcaccactgcactctagcc
s panTro4.chr19              59785807 301 +  63644993 acaaaaaaaaaaaaagaaagaaagaaagaaagaaaaagaaaccata---------------------------ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaagatgggcagatcacttgaggtcaggagttcaagaccagcatggccaacatggtgaaaccctgtctctactaaaaatac-aaacattagccaggcgtggtgacacaagcctgtaatcccagctactaag-gaggctgaggcacgagaatcacttgaacatggga-gcggaggttgcagtgagccaagatggcaccactgcactctagcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103250612 310 - 106955855 acaaaacaaaaaa-------gaaaaagaaatgaaacaataaccctgccaaatgatggatatgttaactagcttggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcaggcggatcac--gaggtcaggagatcgagac------------cacggtgaaaccccgtctctgctaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtggtcccagctactcggagaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagattgagccactgcactccagcc
i nomLeu3.chr10             I 330 C 0
e ponAbe2.chr19              56699837 604 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47493491 849 +  50890351 I
e papAnu2.chr19              47775355  72 +  51301725 I
e macFas5.chr19              55655161 841 +  59248254 I
e rheMac3.chr19              60532703 885 +  64156825 I

a score=14293.000000
s hg38.chr19_GL949751v2_alt    788272 59 +   1002683 tgggggacagagtaagacttcctctc--aaaaaaaaaaaaaaaaaaaacaataaccctgcg
s panTro4.chr19              59786108 58 +  63644993 tgggggacagagtaagaattcctctc---aaaacaaaaaaaaatgaaacaataaccctgcg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56700441 61 +  60714840 tgggggacagaatgagacttcctctcaaaaaaaaaaaaagaaaTGaaacaataaccctgcc
i ponAbe2.chr19             I 604 C 0
s nomLeu3.chr10             103250922 37 - 106955855 tgggtgaaaaagcgagactccgtctc----aaacaaaaaaa--------------------
i nomLeu3.chr10             C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47493491 849 +  50890351 I
e papAnu2.chr19              47775355 72 +  51301725 I
e macFas5.chr19              55655161 841 +  59248254 I
e rheMac3.chr19              60532703 885 +  64156825 I

a score=11280.000000
s hg38.chr19_GL949751v2_alt    788331 12 +   1002683 agatgatggata
s panTro4.chr19              59786166 12 +  63644993 agatgatggata
i panTro4.chr19             C 0 I 3
s ponAbe2.chr19              56700502 12 +  60714840 agatgatggata
i ponAbe2.chr19             C 0 I 3
s macFas5.chr19              55656002 12 +  59248254 agatgatggata
i macFas5.chr19             I 841 I 3
s chlSab2.chr6               47494340 12 +  50890351 agatgatggata
i chlSab2.chr6              I 849 I 3
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103250959  0 - 106955855 C
e papAnu2.chr19              47775355 72 +  51301725 I
e rheMac3.chr19              60532703 885 +  64156825 I

a score=1043813.000000
s hg38.chr19_GL949751v2_alt    788343 605 +   1002683 taactagcttgactatgatgatcatgtcaccatgtatacatacatcaaaacatcaagtgtaatacaccttaaatatatacaatttccatttgtcaatcatatctcaataaagctaaaagaaACCTCTAAGTTTCAACTTTATTTTCAGAAAGCTGTGCCATGCTTACCTCAGTGCCTAAGTATACTCTAATTCATGGAAATGGCCTTTAAAACTGCAGAGAGTggctgggtgcagtggctcacgcctataatcccagcactttgggaggcggaggt------gggcagatcacgaggtcaggagttcgagatcagcctggccaacatggtgaaactctgtctctactaaaaatac-aaaaaatagctgggcatggtggcaggtgcctgtaaatctgagatactcaggaggctgagacaggagaatcgtttgaactggggaggcagaggttgcagtgagccgagatcctgccattgcactccagcctgggcgacagggtgagactccatctc-aaaaaaaaaaaaaaTACTGCAGAGAGTTAAGGCCCTCACTGGACACTCTCCGGTACCTCTGAGGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
s panTro4.chr19              59786181 605 +  63644993 taactagcttgactatgatgatcatgtcaccatgtatacatacatcaaaacatcaagtgtaatacaccttaaatatatacagtttccatttgtcaatcatatctcaataaagctaaaacaaACCTCTAAGTTTCAACTTTATTTTCAGAAAGCTGTGCCATGCTTACCTCAGTGCCTAAGTATACTCTAATTCATGGAAATGGCCTTTAAAACTGCAGAGAGTggctgggtgcagtggctcacgcctataatcccagcactttgggaggcggaggt------gggcagatcatgaggtcaggagttcgagatcagcctggccaacacggtgaaaccctgactctactaaaaatac-aaaaaatagctgggcatggtggcaagcgcctgtaaatctgagatactcaggaggctgagacaggagaatcgtttgaactggggaggcagaggttgcagtgagccgagatcctgccattgcactccagcctgggaaacagggtgagactccatctc-aaaaaaaaaaaaaaTACTGCAGACAGTTAAGGCCCCCACTGGACACTCTCCGGTACCTCTGACGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
i panTro4.chr19             I 3 C 0
s ponAbe2.chr19              56700517 596 +  60714840 taactagcttgactgtgatgatcatgtc---------acatacatcaaaacatcaagtgtaatacaccttaaatatatacaatttccatttgtcaatcatatctcaataaagctgaaagaaACCTCTAAGTTTCAACTTTATATTCAGAAAGCTGTGTCATGCTTACCTCAGTGCCTAAGTATACTCTAACTCACGGAAATGGCCTTTAAAACTGCAGAGAGTggctgggcgcagtggctcacgcctataatcccagcactttgggaggcggagga------gggtggatcacgaggtcaggagttcgagatcagcctggccaacatgatgaaactccatctctactaaaaacac-aaaaaatagctgggcttggtggcaagcacctgtaaatctgagatactcaggaggctgagacaggaaaatcgtttgaacccgggaggcagaggttgcagtgagccgagatcgtgccattgcactccagcctgggcaacagggtgaaactgcatctc-aaaaaaaaaaaaaaTACTGCAGAGAGTTAAGGCCCTCGCTGGCCACTCTCTGGTACCTCTGAGGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
i ponAbe2.chr19             I 3 C 0
s nomLeu3.chr10             103250959 605 - 106955855 -aactagcttaactgcgatgaccatgtcaccatgtatacatacatcaaaacatcaagtgtaatacaccttaaatatatacaatttccatttgtcaatcatatctcaatacagctgaaagaaacctcTAAGTTTCAACTTTATTTTCAGAAAGCTGTGCCATGCTTACCTCAGTGCCTAAGTATACTCTAATTCATGGAAATGGCCTTTAAAACTGCAGAGAGTAgctgggtgcggtggctcacacctataatcccagcactttgggaatcggaggc------aggtggatcatgaggtcaagagttcaagatcagcctggccaacatggtgaaactccgtctctactaaaaatac-aaaaaatagctgggcatggtggcaagcatctgtaaatctgagatactcaggaggctgagacaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagatcgtgccattgcactccagcctgggtgacagggtgagactctatctcaaaaaaaaaaaaaaaaaCCGCAAAAAGTTAAGGCACTCGCTGGCCACTCTCCGGTACCTCTGAGGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
i nomLeu3.chr10             C 0 I 21
s rheMac3.chr19              60533588 608 +  64156825 taactagcttgactgtgatgatcatgtcaccatgtatacatacatcaaaacatgaagtgtaatacaccttaaatatatacaatttccatttgtcaatcatgtcgcaataaagctgaaagaaACCTCTAAGTTTCAACTTTATTTTCAGAAAGCTGTGCCATGCTTACCTCAGTACCGAAGTATACTCTAATTCATGGAAATTGCCTTTAAAACTGC--AGAGTggctggacgcagcggctcacacctataatcccagcactttgggaggtggaggtgaaggcgggcggatcatgaggtcaggagttcgagatcagcctggccaacatggtgaaactccgtctctactaaaaatacaaaaaaatagctgtgcgtggtgttgggcacctgt-aatctgagatactcaggaagctgaggaaggagaatcatttcaactcgggatgcggaggttgcagtgagccgagattgtgccattgcactccagcctgggcgaca-ggtgagactccacggc-aaaaaaaaaaaaaaTACTGCAGAGAGTTAAGGCCCTCGCTGGCCGCTCTCCGGTACCTCTGAGGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
i rheMac3.chr19             I 885 C 0
s macFas5.chr19              55656017 608 +  59248254 taactagcttgactgtgatgatcatgtcaccatgtatacatacatcaaaacatgaagtgtaatacaccttaaatatatacaatttccatttgtcaatcatgtcgcaataaagctgaaagaaACCTCTAAGTTTCAACTTTACTTTCAGAAAGCTGTGCCATGCTTACCTCAGTACCGAAGTATACTCTAATTCATGGAAATTGCCTTTAAAACTGC--AGAGTggctggacgcagcggctcacacctataatcccagcactttgggaggtggaggtgaaggcgggcggatcatgaggtcaggagttcgagatcagcctggccaacatggtgaaactccgtctctactaaaaatacaaaaaaatagctgtgcgtggtgttgggcacctgt-aatctgagacactcaggaagctgaggcaggagaatcatttcaactcgggatgcggaggttgcagtgagccgagattgtgccattgcactccagcctgggcgaca-ggtgagactccacggc-aaaaaaaaaaaaaaTACTGCAGAGAGTTAAGGCCCTCGCTGGCCGCTCTCCGGTACCTCTGAGGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
i macFas5.chr19             I 3 C 0
s chlSab2.chr6               47494355 607 +  50890351 taactagcttgactgtgatgatcatgtcaccatgtatacatacatcaaaacattaagtgtaatacaccttaaatatatacaatttccatttgtcaatcatgtcgcaataaagctgaaagaaACCTCTAAGTTTCAACTTTATTTTCAGAAAGCTGTGCCATGCTTACCTCAGTACCAAAGTATACTCGAATTCATGGAAATTGCCTTTAAAACTGC--AGAGTggctggacgcagcggctcacacctataatcccagcactttgggaggtggaggtgaaggcgggcggatcatgaggtcaggagttcgagatcagcctggccaacatggtgaaactctgtctctactaaaaatacaaaaaaatagctgtgcgtggtggcgggcacctgt-aatctgagatactcaggaggctgaggcaggagaatcgtttgaaccttggaggcagaggttgcagtgagccgagattgtgccattgcactccagcctgggcgaca--gtgagactccacggc-aaaaaaaaaaaaaaaaCTGCAGAGAGTTAAGGCCCTCACTGGCCGCTCTCCGGTACCTCTGAGGTCAGTGGATAGAGAAGCAGCTCCCCTTCTTCTTCCTC
i chlSab2.chr6              I 3 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e papAnu2.chr19              47775355  72 +  51301725 I

a score=178876.000000
s hg38.chr19_GL949751v2_alt    788948 76 +   1002683 GAAACAAAGGCCTCCTTCCTTCTTAGGTGTTTGAGACAAATTCTCCACACAGGTGCAGCTGAGTGCTGTAAAGTCC
s panTro4.chr19              59786786 76 +  63644993 GAAACAAAGGCCTCCTTCCTTCTTAGGCATTTGAGACACATTCTCCACACAGGTGCAGCTGAGCACTGTAAAGTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56701113 76 +  60714840 GAAACAAAGGCCTCCTTCCTTCTTAGGCGTTTGGGACAAATTCTCCACACAGGTGCAGCTGAGCACTGTAAAGTGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251585 76 - 106955855 GAAACCAAGGCCTCCTTCCTTCTGAGGCGTTTGGGACAAATTCTCCACACAGGTGCAGCTGAGCACTGTAAAGTCC
i nomLeu3.chr10             I 21 C 0
s rheMac3.chr19              60534196 76 +  64156825 GAAACAGAAGCCTCCTCCTTTCTTAGGCATTTGGGACAAATTCTCCACACAGGTGCAGCTGAGCACTGTAAAGTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55656625 76 +  59248254 GAAACAGAAGCTTCCTCCTTTCTTAGGCGTTTGGGACAAATTCTCCACACAGGTGCAGCTGAGCACTGTAAAGTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47775427 76 +  51301725 ggaaCAGAAGCCTCCTCCTTTCTTAGGCGTTTGGGACAAATTCTCCACACAGGTACAGCTGAGCACTGTAAAGTCC
i papAnu2.chr19             I 72 I 19
s chlSab2.chr6               47494962 76 +  50890351 AAAACAGAAGCCTCCTCCTTTCTTAGGCGTTTGGGACAAATTCTCCACACAGGTGCAGCTAAGCACTGTAAAGTCC
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=1795.000000
s hg38.chr19_GL949751v2_alt    789024 2 +   1002683 CA
s panTro4.chr19              59786862 2 +  63644993 CA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56701189 2 +  60714840 CA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251661 2 - 106955855 CT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60534272 2 +  64156825 CA
i rheMac3.chr19             C 0 I 17
s chlSab2.chr6               47495038 2 +  50890351 CA
i chlSab2.chr6              C 0 I 17
e calJac3.chr22              45773030 96928 +  49145316 I
e papAnu2.chr19              47775503 19 +  51301725 I
e macFas5.chr19              55656701 0 +  59248254 C

a score=17577.000000
s hg38.chr19_GL949751v2_alt    789026 40 +   1002683 CTGAGAGTTGAAGGTCCCCACTGCCAGTCACAGTTCGGTC
s panTro4.chr19              59786864 40 +  63644993 CTGAGGGTTGAAGGTCCTCACTGCCAGTCACAGTTCGGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56701191 40 +  60714840 CTGAGGGTTGAAGGTCTCCATCGCCAGTCACGGTTTGGTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251663 40 - 106955855 TTGAGGGTTGAGGGTCCCCATCGCCAGTCACAGTTTATTC
i nomLeu3.chr10             C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47495040 17 +  50890351 I
e papAnu2.chr19              47775503 19 +  51301725 I
e macFas5.chr19              55656701  0 +  59248254 C
e rheMac3.chr19              60534274 17 +  64156825 I

a score=34276.000000
s hg38.chr19_GL949751v2_alt    789066 43 +   1002683 CCACTGAGGGTTGAAGGTCCCCACTGCCAGTCACAGTTTGGTC
s panTro4.chr19              59786904 43 +  63644993 CCACTGAGGGTTGAAGGTCCCCACTGCCAGTCACAGTTCGGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56701231 43 +  60714840 CCACTGAGGGTTGAGGATCTCCACTGCCAGTCACACTTTGGTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251703 43 - 106955855 CCACTGAGGGTTGAGGGTCTCCACTGCCAGTCACAGTTTAGTG
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47775522 43 +  51301725 CCATTGAGGGTTGAGGGTCTCCATTGCCAGTCACAGTTTGGGC
i papAnu2.chr19             I 19 T 62
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47495040 17 +  50890351 I
e macFas5.chr19              55656701  0 +  59248254 C
e rheMac3.chr19              60534274 17 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt    789109 1 +   1002683 C
s panTro4.chr19              59786947 1 +  63644993 C
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56701274 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251746 1 - 106955855 C
i nomLeu3.chr10             C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47495040 17 +  50890351 I
e papAnu2.chr19              47775565 62 +  51301725 T
e macFas5.chr19              55656701 0 +  59248254 C
e rheMac3.chr19              60534274 17 +  64156825 I

a score=27751.000000
s hg38.chr19_GL949751v2_alt    789110 42 +   1002683 CATTGAGGGTTGAGAGTCTCCACTGCCAGTCACAGTTTGGTC
s panTro4.chr19              59786948 42 +  63644993 CACTGAGGGTTGAGGGTCTCCACTGCCAGTCACACTTCGGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56701275 42 +  60714840 CACTGAGGGTTGAGGGTCTCCATCGCCAGTCACAGTTTAGTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251747 42 - 106955855 CACTGAGGGTTGAGGGTCTCCAATGCCAGTCACAGTTTAGTG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55656701 22 +  59248254 CAtcgagggtcgagggtctcca--------------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47775503 22 +  51301725 CATCGAGGGTCGAGGGTCTCCA--------------------
i papAnu2.chr19             T 62 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47495040 17 +  50890351 I
e rheMac3.chr19              60534274 17 +  64156825 I

a score=43987.000000
s hg38.chr19_GL949751v2_alt    789152 20 +   1002683 CCATTGAGGGTTGAGAGTCT
s panTro4.chr19              59786990 20 +  63644993 CCACTGAGGGTTGAGAGTCT
i panTro4.chr19             C 0 I 1027
s ponAbe2.chr19              56701317 20 +  60714840 CCACTGAGTGTTGAGGGTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103251789 20 - 106955855 CCACTGAGGGTTGAGGGTCT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60534291 20 +  64156825 CCATTGAGGGTTGAGGGTCT
i rheMac3.chr19             I 17 C 0
s macFas5.chr19              55656723 17 +  59248254 ---ttgagggttgagggtcT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47775525 17 +  51301725 ---TTGAGGGTTGAGGGTCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47495057 20 +  50890351 ccattgagggttgagggtcT
i chlSab2.chr6              I 17 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=24331.000000
s hg38.chr19_GL949751v2_alt    789172 13 +   1002683 CCACTGCCAGTCA--
s panTro4.chr19              59788037 13 +  63644993 CCACTGCCAGTCA--
i panTro4.chr19             I 1027 I 4123
s ponAbe2.chr19              56701337 13 +  60714840 CCACTGCCAGTCA--
i ponAbe2.chr19             C 0 I 733
s nomLeu3.chr10             103251809 13 - 106955855 CCAATGCCAGTCA--
i nomLeu3.chr10             C 0 I 217
s rheMac3.chr19              60534311 15 +  64156825 CCATTGCCAGTCACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55656740 15 +  59248254 CCATTGCCAGTCACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47775542 15 +  51301725 CCATTGCCAGTCACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47495077 15 +  50890351 CCATTGCCAGTCCCA
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=842891.000000
s hg38.chr19_GL949751v2_alt    789185 375 +   1002683 GTTTGGGCTTATTAGGGTTTATGCTGTGCACGGAGAATGGAACCTACCAATCAACTCTTAGTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTGCTGGGAAATCCCAAATCCCAAAATATGCAGAGACCAATAGATGCCTCAATTCTTCCGTGTCTCCGTCTAAATCCTTGGGTCACTGTGACTCCTGTAGTTATGTGGCTTGTAATTCCTTGGGCCGTAGAATGGCTATGATAGGCCCTGTGCTAAGGGGACTGGTGACAGTTGAGACAGGAACATGGAAGCTATAGTAGTCAGGGTTCTCCAGAAAAAAAAATAATCAACACTAATAATGATAGATATATAGATAATGATTGATAGACAA--------------ATAATGATAGA
s panTro4.chr19              59792173 382 +  63644993 GTTTGGGCTTATTAGGGTTTATGCTGTGCACGGTGAATGGAACCTACCAATCCACTCTTAGTGACCAGTTAGACAGACTCAAGGCAAATTTCCCTGCTGGGAAATCCCAAATCCCAAAATATGCAGAGACCAGTAGATGCCTCAATTCTTCCGTGTCTCCCTCTAAATCCTTGGGTCACTGTGACTCCTGTAGTGATGTGGCTTGTAATTCCTTGGGCCGTAGAATGGCTGTGATAGGCCCTGTGCTAAGCGGACTGGTGACAGTTGAGACA-------GGAAGCTATAGTAGTCAGGATTCTCCAGAAAAAAAAATAATCAACACTCATAATgatagatatatagataaagattgatagacaaataatgatagatggataatgataga
i panTro4.chr19             I 4123 C 0
s ponAbe2.chr19              56702083 374 +  60714840 GTTTGGGCTTATTAGGGTTTATGCTGTACAAAGAGAATGGAACCTACCAATCAACTCTTAGTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTGCTGGGAAATCCCAGATCCCAAAATATGCAGAGACGAATAGATGCCTCAATTCTTCCGTGTCTCCGTCTAAATCCCTGGATCACTGTGACTCCTGTAGTTATGCGGCTTGTAATTCCTCGGGCCATAGAACGGCTATGATACGCCCTGTGCTAAGGGGATTGCTGACAGTTGAGACAGGAACGTGGAAGCTATAGTAGTCAGGGTTCTCCAGAAAAAAAAATAATCAACACTAATAATgatagatacatagataatgattgatag-caa--------------ataatgataga
i ponAbe2.chr19             I 733 C 0
s nomLeu3.chr10             103252039 373 - 106955855 GTTTGGGCTTATTAGGGTTTATGCTATGCACGGAGAATGGAACTTACCAATCAACTCTTAGTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTACTGGGAAATCCCAAATCCCAAAACATGCAGAGACCAATAGATGCCTCAGTTCTTCTGTGTTTCCATCTAAATCCTTGGGTCACTGTGACTCCTGTAGTTATGTGGTTTGTAATTCCTTGGGCCGTAGAATGGCTATGATAGGCCCTCTGCTAAGGGGACTGGTGACAGTTGAGATAGGAACATGGAAGCTACAGTAGTCagggttctccagaaaaaaaa--aatcaatactaataatgatagatatatagatactgattgatagacaA--------------ATAATGATAGA
i nomLeu3.chr10             I 217 C 0
s rheMac3.chr19              60534326 372 +  64156825 GTTTGGGCTTGTTAGAG-TTATGCTGTACAAGGAGAATGGAACCTATCAATCAACTCTTAGTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTACTGGGAAATCCTAAATCCCAAAATATGCAGAGACCAATAGACGCCTCAATTCTTCTGTGTCTCCGTCTAAATCCTTGGATCACTGTGATTCACATAATTATGTGGCTTGTAATTCCTCGGGCTGCAGAATGGCTACGATAGACCCTGTGCTAAGGGGATTGGTGACAGTTGAGACAGGAACATGGAAGCTATAGCAGTCAGGGTTCTCCAGAAAAAAAT--AATCAATACTAATGATgatagatatacaggtaatgattgatagtcaa--------------ataatgataga
i rheMac3.chr19             C 0 I 22938
s macFas5.chr19              55656755 367 +  59248254 GTTTGGGCTTGTTAGG------GCTGTACAAGGAGAATGGAACCTATCAATCAACTCTTAGTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTACTGGGAAATCCTAAATCCCAAAATATGCAGAGACCAATAGACGCCTCAATTCTTCTGTGTCTCCGTCTAAATCCTTGGATCACTGTGATTCACATAATTATGTGGCTTGTAATTCCTCGGGCTGCAGAATGGCTACGATAGACCCTGTGCTAAGGGGATTGGTGACAGTTGAGACAGGAACATGGAAGCTATAGCAGTCAGGGTTCTCCAGAAaaaaat--aatcaatactaataatgatagatatacaggtaatgattgatagtcaa--------------ataatgataga
i macFas5.chr19             C 0 I 8
s papAnu2.chr19              47775557 372 +  51301725 GTTTGGGCTTGTTAGGG-TTATGCTGTACCAGGAGAGTGGAACTTATCAATCAACTCTTACTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTACTGGGAAATCCCAAATCCCAAAATATGCAGAGACCAATAGACGCCTCAATTCCTCTGTGTCTCCGCCTAAATCCTTGGATCACTGTGATTCACGTAGTTATGTGGCTTGTAATTCCTCGGGCTGCAGAATGGCTATGACAGACCCTGTGCTAAGGGGATTGGTGACAGTTGAGACAGGAACGTGGAAGCTATagcagtcagggttctccagaaaaaaat--aatcaatactaataatgatagatatataggtaatgattgatagtcaa--------------ataatgataga
i papAnu2.chr19             C 0 I 8
s chlSab2.chr6               47495092 372 +  50890351 GTTTGGGCTTGTTAGAG-TTATGCTGTACAAGGAGAGTGGAACTTATCAATCAACTCTTACTGACCAGTTAGACAGATTCAAGGCAAATTTCCCTACTGGGAAATCCTAAATCCCAAAATATGCAGAGACCAATAGACGCCTCAATTCCTCTGTGTCTCCGTCTAAATCCTTGGATCACTGTGATTCACGTAATTATGTGGCTTGTAATTCCTCGGGCTGCAGAATGGCTACGACAGACTCTGTGCTAAGGGGATTGGTGACAGTTGAGACAGGAACATGGAAGCTATAGCAGTCAGGGTTCTCCAGAAaaaaat--aatcaatactaataatgatagatatataggtaatgattgatagtcaa--------------ataatgataga
i chlSab2.chr6              C 0 I 4
e calJac3.chr22              45773030 96928 +  49145316 I

a score=11886.000000
s hg38.chr19_GL949751v2_alt    789560 12 +   1002683 --TATATAATGATA
s panTro4.chr19              59792555 12 +  63644993 --tatataATGATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56702457 12 +  60714840 --tggataatgata
i ponAbe2.chr19             C 0 I 32314
s nomLeu3.chr10             103252412 11 - 106955855 --TATATAAT-ATA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55657130 14 +  59248254 taatgataatgata
i macFas5.chr19             I 8 C 0
s papAnu2.chr19              47775937 14 +  51301725 taatgataatgata
i papAnu2.chr19             I 8 C 0
s chlSab2.chr6               47495468 14 +  50890351 taatgataatgata
i chlSab2.chr6              I 4 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e rheMac3.chr19              60534698 22938 +  64156825 I

a score=12416.000000
s hg38.chr19_GL949751v2_alt    789572 17 +   1002683 TCACAAATAATGATAG-A
s panTro4.chr19              59792567 16 +  63644993 TCACAAATAATgatag--
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103252423 17 - 106955855 TCACAAATAATGATAG-A
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55657144 12 +  59248254 tcacaaataat----g--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47775951 16 +  51301725 tcacaaataatgatag--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47495482 17 +  50890351 tcacaaataatgataga-
i chlSab2.chr6              C 0 I 19491
e ponAbe2.chr19              56702469 32314 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e rheMac3.chr19              60534698 22938 +  64156825 I

a score=20965.000000
s hg38.chr19_GL949751v2_alt    789589 30 +   1002683 CATATAGTTGGATAATGACAGATATATAAT
s panTro4.chr19              59792583 27 +  63644993 ---atagatggataatgacaggtatataat
i panTro4.chr19             C 0 I 26048
s nomLeu3.chr10             103252440 30 - 106955855 CAGATAGATGGCTAATGACAGATATATAAT
i nomLeu3.chr10             C 0 I 20981
s macFas5.chr19              55657156 27 +  59248254 ---atagatggataatgatagatatatagt
i macFas5.chr19             C 0 I 26969
s papAnu2.chr19              47775967 27 +  51301725 ---atagatggataatgatagatatatagt
i papAnu2.chr19             C 0 I 22117
e ponAbe2.chr19              56702469 32314 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47495499 19491 +  50890351 I
e rheMac3.chr19              60534698 22938 +  64156825 I

a score=0.000000
s hg38.chr19_GL949751v2_alt    789619 26000 +   1002683 [encoded data, 26000 characters]
e ponAbe2.chr19              56702469 32314 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103252470 20981 - 106955855 I
e chlSab2.chr6               47495499 19491 +  50890351 I
e papAnu2.chr19              47775994 22117 +  51301725 I
e macFas5.chr19              55657183 26969 +  59248254 I
e rheMac3.chr19              60534698 22938 +  64156825 I
e panTro4.chr19              59792610 26048 +  63644993 I

a score=201405.000000
s hg38.chr19_GL949751v2_alt    815619 2231 +   1002683 aagctttgcggcagtacagcccaggtaatttgctgagcttgatcggtgtcagggtcagtccaagtgaaagcgaagagaggctgggatgaagggtgcaaaggaatagtaaagaaagcacgtttgagatccagaacagaataatgggttgtagaggcaggtattgaggataggagagtatatgggtttggcactacggggtggataggcaaaacaatttggttgataaggcgcagatcctgaactaatgtgtaagccttgtctggttttaggacaggtaaaatgggagaattgtaaggggagtttataggctttaaaaggccatgctgtagcaggctttaatccttttaaagcgtgctgcggaatgggatattggcgttgagtggggtaagggtgattaggttttaatgagatggtaaggggtgcatgatcggtcaccaaggagggagtagaggtatcctatacttgtgggttaaggtggggggatgcaagaggaggaagcaaaggaggctttggattgggaagaatggcagcaatgagatatagctgtagtccaggaacagtcagggaagcagataatttagttaaagtgtctcagcctaataagggaactgggcaggtggggataactgaaaaggagtgcttgaaagagtattgtctaagttggcaccagagttggggagttttaagaggtttagaagcctagctgtcaatacctacaacagttatggaggcaagggaaacaggcccttgaaaagaaggtaatgtggagtgggtagcctccatattgattaagaaggggacgggcttaccttccactgtgagagttacctagactgt----gatggtcctgtaggcttctgaggcgatcgggatcgggcagtgtcagtcttcagctgctaagccgagaagatctgggaaggagtcagagagccttgggccagagttctagctgctctgggagtggctgccaggtgagttgaacagtccgattttcagtggggtcccgcacagatgggatgcggcttaggaggaatcccaggctgtggacattccttggcccagtggccagatttccagtacttgtagcaagctcctgggggaagaggttctggaggaacccctggcagctgcggttcaggcgtttggagttctcgtgtgctggagatgtggctggggtttgtctcatctggatactggagtggaggcaaggaattgcaactcagaaatatgttgctatttggctgcctctactctattactgtacaccttgaaggcgaggttaattaagtcttgttgtggggtttgagggacagaatttaatttttggagctttatttaatgttgggagcagatttggtaataaaatgtatattgagaataagacggccttttgacttagggtctagggctgtaaagcgtctcagggttgctgccaaatgagccatgaactgggctgtgtttttaaatttgatgaaaaagagcctaaacactatctgatttgggagaggtcagataaagaaaaaggagcattaaccttgactatgcctttagcttcagccacctttttaagaggaaattgctgggcagttgggggagggctagtcatggaatggaactgtaagctggaccgggtgtgaggaggggaggtgataaaaggattatagggtggaggagcggaggctgaggaagaattgggacccagctcggcctggcgaggaggggagatgtcagatgggtctgtagaaaaggaagattagaaagactcagcgatgcttggggttgggactgacgggacaggcgggagggaaagaaggaagatttgggacgagttgcactgggcatagagactagggagggaccgatgtgtaaaagaatgcctggatgtcaggcacctcagaccatttgcccattttacaacaagaattatttagatcttgtaggatggaaaaattgaaagtgccgttttctggctatttggaaccactgtcaagtttgtattggggtcaagcagcattgcagaagaaaataaggcatttaggttttaggtcaggtgtgagttgaagaggttttaggtttttaagaacacaggctaagggagaagaaggaggaatggagggtggaaggttgcccatactgaaggaggcaagcacagagaaaagagagagtagagacatggagggaaggggttcaggggttcttaccttccagaaaagcgggaaaggggtcagggcaca
s panTro4.chr19              59818658 2229 +  63644993 aagctttgcggcagtacagcctaggtaatttgctgagcttgatgggtgtcagggtcagtccaagtgaaagcgaagagaggctgggattaagggtacaaagcaatagtaaagaaagcatgtttgagatccagaacagaataatgggtggttgagggaggtattgaggataggagagtatatgggtttggcaccacggggtggataggcaaaacaatttggttgataaggtgcagatcctgaactaatgtgtaagccttgtctggttttaggacaggtaaaatgggggaattgcaaggagagtttataggctttaaaaggccatgctgtagcgggctttaatccttttaaagcgtgctgtgggatgggatattggcattgagcggggtaagggtgattaggttttaatgagatggtaaggggtgcatgatcggtcaccaaggagggagtagaggtatcttatacttgtgggttaaggtggggggatacaagaggaggacgcaaaggaggctttggattgggaagaagggcggcaatgagatacagctgtggtccaggaatagtcagggaagcagataatttagttaaagtgtctcagcctaataagggaactgggcaggtggggataactaaaaaggagtgcttgaaagagtattgtctaagttggcaccagagttggggagttttaagaggtttagaagcctagctgtcaatacctacaacagttatggaggcaagggaaacgggcccttgaaaagaaggtaatgtggagtgggtagcctccatattgattaagaaggggacaggcttaccttccactgtgagagttacctagactgtctgtgatggtcctgtaggcttccgaggtgatcggg------cagtgtcagtcttcagctgctaagccgagaagatctgggaaggagtcagagagccttgggccagagttctagctgctctgggagtggctgccaggtgagttgaacagtccgattttcagtggggtcccgcacagatgggacgcggcttaggaggaatcccaggctgtggacattccttggcccagtggccagatttccagtacttgtagcaagctcctgggggaagaggttctggaggaaaccctggcagctgcggttcaggcgtttggagttctcgtgtgctggagatgtggctggggtttgtctcatctggagactggagtggaggcaaggaattgcaactcagaaatatgttgctacttggctgcctctactctattattgtacaccttgaaggcaaggttaattgagtcctgttgtggggtttgagggaccgaatttaatttttggagctttatttaatgtcgggagcagatttggtaataaaatgtattttgagaataagatggccttttgacttagggtctagggctgtaaagcatctcagggttgctgccaaacaagccatgaactgggctgtgtttttaaatttgatgaaaaagagcctaaacactatctgatttgggagaggtcagataaagaaaaaggagcattaaccttgactatgcctttagctccagccacctttttaagaggaaattgctgggcagttgggggagggctagtcacggaacggaactgtaagctggaccgggtatgaggaggggaggtgataaaaagattacagggtggaggagcggaggctgaggaagaattgggacccagcttggcctggcaaggaggggagatgtcagatgggtctgtagaaaaggaagattagaaagactcagcgatgcttggggttgggactgacgggacaggcgggagggaaagaaggaagatttgggatgagttgcactgggcacagagactagggagggaccgatgtgtaaaagaatgcctggatgtcaggtacctcagaccgtttgcccattttacaacaagaattatttatatcttgtaggatggaaaaattgaaagtgccgttttctggctatttggaaccactgtcgagtttgtattggggtcaagcagcattgcagaagaaaataaggcatttaggttttaggtcaggtgtgagttgaagaggttttaggtttttaagaacacaggccaagggagaaggaggaggaatggagggtggaaggttgcccatagtgaaggaggcaagcacagagaaaagagagagtagagacacggagggaaggggttcaggggttcttaccctccagaaaagcgggaaaggggtcagggcaca
i panTro4.chr19             I 26048 C 0
e ponAbe2.chr19              56702469 32314 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103252470 20981 - 106955855 I
e chlSab2.chr6               47495499 19491 +  50890351 I
e papAnu2.chr19              47775994 22117 +  51301725 I
e macFas5.chr19              55657183 26969 +  59248254 I
e rheMac3.chr19              60534698 22938 +  64156825 I

a score=274116.000000
s hg38.chr19_GL949751v2_alt    817850 1104 +   1002683 gaagtaagggattggggtgcagagacaagaggtcggggtgtggaaataagggatcggggtgcagagataagacgtcagggcacagaaataagggatcgggggattcttgccccctagaaaagcggtacttgccactaagggtgaaggagaaggggttggggggttcttgcccccccagaaaagcagagaaggggtagagacac--agagaaggagttgggggttcttgcccccccagaaaagcagtacttgccactaagggtgaaggaccaaggcaggcatccccatgtggtcagacacctctgaaacgtgggtgaataatcagagaggtgtccctgcgtgattaaacaccaagggaaggctgccttcccgagtccatgaccggcgctggagttttgggtccacgaataaagcgcgtctcctgtctctaccagaaaaggaaaggaactgaaattaagagaagggagagattgaagagtg-----------gaaaggagaaagtggttgagggatagtgagagaggttggagaagagagtaaaaagaggctgcttactggatttaaaattggtgagatgttccttgggctggttggtctgaggacgagaggtcgtaggtggatctttctcatggagcaaagagcaggaggacaggggattgatctcctaaggaagatcccctgattcgagttatggcaccaaaTTtcactcacgtccgtgtgaagagaccaccaaacaggatttgtgtgagcaacaaggctgtttatttcacctgggtgcaggcgggctgagtccagaaagagagtcagcaaagggagataggagtgcggccgttttataggatttgggtaggtaaaggaaaattacagtcaaaaggggg-ttgttctctggcgggcaggagtggggttcacaaggtgctcagtaggggagcttttgagccgggatgagccaggagaaggaatttcataagataatgtcatcacttaaggcaagaacaggccattttcatttctttcgtggtggaatgtcatcagttaaggcaggaaccggccatctggatgtgtacatacaggccacagggggatatgatggcttagcttgggctcagaggcctgaca
s panTro4.chr19              59820887 1090 +  63644993 gaagtaagggattggggtgcagagataagaggtcggggtgtggaaataagggatcggggtgcagagataagaggtcggggcacagaaataagggatcagggggttcttgccccctagaaaagcagtacttgccactaaggatgaaggagaaggggttggggggttcttgcccccc-agaaaagcagagaaggggtagagacac--agagaaggagttgggggttcttgcccccccagaaaagcagtacttgccactaagggtgaaggaccaaggcaggcatccccgtgtggtcagacacctctgaaacgtgggtgaataatcagagaggtgtccccgcatgattaaacaccaagggaagactgccttcccaagtccatgacctgcgctggagttttgggtccacgaataaaacgcatctcctgtctctaccagaaaaggaaaggaactgaaattaagagaagggagaaactgaagggtg-----------gaaaggagaaagtggttgagggacagtgagagaggttggagaagagagtaaaaagaggctgcttactggatttaaaattggtgagatgttccttgggctggttggtctgaggaccagaggtcgtaggtggatctttctcatggagcaaagagcaggaggacaggggattgatctcct--------------gattcgagtcatggcaccaaaTTtcactcacgtccatgtgaagagaccaccaaacaggctttgtgtgagcaacaaggctgtttatttcacctgggtgcaggcgggctgagtccaaaaagagagtcagcaaagggagataggggtggggccgttttataggatttgggtaggtaaaggaaaattacagtcaaaaggggggttgttctctggcgggcaggagtgggggtcacaaggtgctcagtaggggagcttttgagccaggatgagccaggagaaggaatttcacaagataatgtcatcagttaaggcaagaacaggccattttcatttctttcgtggtggaatgtcatcagttaaggcaggaaccagccatctggatgtgtacgtgcaggccacagggggatatgatggcttagcttgggctcagaggcctgaca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56734783 1110 +  60714840 gaaataagggatt-gggtgcagagataagaggtcagggtgtggaaataagggatcggggtgcagagataagaggttggggcacagaaataagggattgggaggttcttgccccctagaaaaatggtacttgccactaagggcaaaggagaaggggttggggggttcttgcccccc-agaaaagcagagaaggggtagagacatggagagaaggagttgggggtttcttgccccccagaaaagcagtacttgccgctaagggtgaaggaccaaggcaggcgtccccgcgtggtcagacacctctgaaacgtgggtgagtaatcaggcaggcgtccctgtgtgattaaacaccaagggaagactgtcttcccgagtccgtgaccggcaccggagttttgggtccatggataaaacgcgtctcctgtctctaccagaaaaggaaaggaactgaaattaagagaagggaaagattgaagggtggcgccaagattgaaaggacaaagtggttgagggatagtgagagaggttggagaagacagtaagaagaggctacttacccaatttaaacttggtgagatgtttcttgggctggtgggtctgaggacccaaggtcgtaggtggatctttttcacggagcaaagagcaggaggacaggggattgatcttccaagggaggtcccccgatctgagtcacggcaccaaaTTtcatgcgcgtccatgtgaagagaccaccaaaaaggctttgtgtgagcaacatggc-gtttatttcacctgggggcaggcaggttgagtccaaaaagagagtcagcaaagggagatgggggtggggccattttataggatttgggtaggtaaaggaaaattacagtcaaagggggg-ttgttctctggcgggcaggagtgggggtcacaaggtacccagtgggggagcttttgagccaggatgagcc---agaaggaatttcacaagacaatgtcatcagttaaggcaagaacaggccattttcacttcttttgtggtggaatgtcatcagttaaggcaggaactggccatctggatgtgtacatgcaggccaca-ggggatatgatggcttagcttgggctcagaggcctgaca
i ponAbe2.chr19             I 32314 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103252470 20981 - 106955855 I
e chlSab2.chr6               47495499 19491 +  50890351 I
e papAnu2.chr19              47775994 22117 +  51301725 I
e macFas5.chr19              55657183 26969 +  59248254 I
e rheMac3.chr19              60534698 22938 +  64156825 I

a score=5623.000000
s hg38.chr19_GL949751v2_alt    818954 10 +   1002683 gtctggatca
s panTro4.chr19              59821977 10 +  63644993 gtctggatca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56735893 10 +  60714840 gtctggatct
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55684152 10 +  59248254 gtctctatct
i macFas5.chr19             I 26969 C 0
s papAnu2.chr19              47798111 10 +  51301725 gtctctatct
i papAnu2.chr19             I 22117 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103252470 20981 - 106955855 I
e chlSab2.chr6               47495499 19491 +  50890351 I
e rheMac3.chr19              60534698 22938 +  64156825 I

a score=112739.000000
s hg38.chr19_GL949751v2_alt    818964 64 +   1002683 cctgacctggtgatccgcacacctcggcctcccaaagtgctgggattacaggcatgacccactg
s panTro4.chr19              59821987 64 +  63644993 cctgacctggtgatccacgcacctcggcctcccaaagtgctgggattacaggcatgacccactg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56735903 64 +  60714840 cctgacctggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgacccactg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60557636 64 +  64156825 cctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacca
i rheMac3.chr19             I 22938 C 0
s macFas5.chr19              55684162 64 +  59248254 cctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47798121 64 +  51301725 cctgacctcgtgatccgccaacctcagcctcccaaagtgctgggattacaggcgtgagccacca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47514990 64 +  50890351 cctgacctcgtgatccgcccacctcagcctcccaaagtgcagggattacaggcgtgagccaccg
i chlSab2.chr6              I 19491 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103252470 20981 - 106955855 I

a score=2247172.000000
s hg38.chr19_GL949751v2_alt    819028 1094 +   1002683 cacctggccTTAGAAAACTTCTTAAATATTAAAATGTATGTTATGTGTATTTTGCCACAATTTTTGAAAAGTACCTTCTGGTGTTtagagacagaagatgagtggttgcctagggccgggagagtgaggggatcgtggtgatgggcagctggtcggcatggggttctgaagggcagtgatgacaacattctaaaattagactgtgttgacggttgcaccaactccgtgaataccacaaaatttaaaccattgaattatgcacttttaatgggtaattgtatggcatgtaaattatatctcaataaagttatATTTTTAAATACCAAAAAAAggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgagaagggcggatcacgaggtcaggagatggagaccatcctggctaacatggtgaaaccccatctctact---ttgaaaaaaaa----aaaaaaaaaaaaaagattacccggacgtggtggtgggcacctgtagtcctagctactcaggaggctgaggcaggagaatggcataaactcgggaggcagagcttgcagtgagtcgagattgcgccactcaggaggctgaggcaagagaatggcataaaccccggaggcagagcttgcagcgagccgagattgcgccactgcactccagcatgggtgacagagcaagagtccatctc------aaaaaaaaaaaaaaaa-------------------aGATTAGTAATATCCTCTGTGTCACTTACCACTTAAGTGATTGAATCACGACTTGAAATTCATCATCTCAAACATGGCTTAGAGTCTGTAGAG--GGGGGACAGTCCCAGGAATGCTGGTGTGGGCTTAAGGCTGAATTAAATAGATCCAgatggctcacacctgtaatcccaataccttgggaggccgaggcaggtgggaggctgaggcaggCGGATCActggagctcctggagcgaagaaaggatgctagtggaaaaactggtgaaatcagaataaagtctatagtttTATTTTTTAAAGGAggctgggcgtggtggctcatgcctctaatcccagcactttgggaggctgaggcaggtggatcagttgagttcaggagttc
s panTro4.chr19              59822051 1020 +  63644993 cacctggccTTAGAAAACTTTTTAAATATTAAAATGTATGTTATGTGTATTTTGCTACAATTTTTGAAAAGCACCTTCTGGTGTTtagagacagaagatgagtggttgcctagggccgggagagtgaggggatcgtggtgatgggcagctggtcggcatggggttctgaagggcagtgatgacaacattctaaaattagactgtgttgacggttgcaccaactccgtgaataccacaaaatttaaaccattgaattatgcacttttaatgggtaattgtatggcatgtaaatcatatctcaataaagttatATTTTTAAATACCAAAAAAAggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatggagaccatcctggctgacatggtgaaaccctgtctctact---ttggaaaaaaa----aaaaaaaaaaaaaagattacccagacatggtggtgggcacctgtagtcctagctactcaggaggctgaggcaggaaaatggcataaacccgggaggcagagctt-----------------------------------------------------------------------gcagtaagctgagattgcgccactgcactccagcatgggtgacagagcgagactctgtctc------aaaaaaaaaaaaaaaa--------------------GATTAGTAATATCCTCTGTGTCACTTACCACTTACGTGATTGAATCACGACTTGAAATTCATCATCTCAAACATGGCTTAGAGTCTGTAGAG--GGG--ACAGTCCCAGGAATGCTGGTGTGGGCTTAAGGCTGAATTAAATAGATCCAgatggctcacacctgtaatcccaataccttgggaggccgaggcaggtggaAGGTTGAGGCGGGCGGATCAGTGGAGCtcctggagcgaagaaaggatgccagtggaaaaactggtgaaatcagaataaagtctatagtttTATTTTTTAAAAGAggctgggcgtggtggctcatgcctctaatcccagcactttgggaggctgaggagggtggatcagttgagttcaagagttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56735967 1016 +  60714840 tacctggccTTAGAAAACtttttaaatattaaaatttatGTTATGTATATTTTGCCACAGTTTTTGAAAAGTGCCTTGTGGTCTTtagagacagaagatgagtggttgcctaggaccgggagagtgaggggatcatggtgacgggcagctgatcggcatggggttctgaagggcagtgatgacaacattctaaaattagattgtgttgatggttgcaccaactctgtgaataccacaaaatttaagccattgaattgtgcacttttaatgggtaattgtatggcatgtaaattatatctcaacaaagttatATTTTTAAATACCAAAAAAAggccgagtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcatgaggtcaggagatggagaccatcctggctaacatggtgaaaccccatctctact---tt-------aa----aaaaaaaaaaaaaagattacccggacgtggtggcaggtgcctatagtcctagctactccagaggctgaggcaggagaatggcatgaacccgggaggcagagctt-----------------------------------------------------------------------gcagtgagccgagattgcgccactgcactcctgcatgggtgacagagcaagactccttctc------aaaaaaaaaaaaaaaaaaaaaaaaaaaaCCAAAAAAGATGAGTAATATCCTCTGTGTCACTTACCACTTAAGTGATTGAATCACGACTCAAAATTCATCATCTGAAACATGGCTTAGAGTCTGTAGAG--GGG--ACAGTCCCAGGAATGCCGGTGTGGGCTTAAGGCTGAACTAAGTAGATCCAgatggctcatacctgtaatcccaataccttgggaggccgaggcaggt-----------------gaatcacttgagctcctggagtgaagaaaggatgctagtggaaaaactggtgaaatcagaataaggtctatagtttTATTTTTTAAAAGAggctgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcagttgaggtcaggagttc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103273451  989 - 106955855 CACCTGGCCTTA-AAAACTTTTTAAATATTAAAATTTATGTTATGTATATTTTGCCACAATTTTTGAAAAGTACCTTGTGGTCTTtagagacagaagatgagtggttgcctggggctgggagagtaaggggatcgtggtgatgggcagctgatcggcatggggttctgaagggcagtgatgacaacattctaaaattagactgtgttgacggttgcaccaactctgtgaataccacaaaatttaagccattgaattatgcacttttaatgggtaattgtatggcatgtaaattagatctcaataaagttatATTTTTAAATACCAAAAAAAggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgagacaggcagatcacgaggtcaggagatggagaccatcctggctaacatggtgaaaccccgtctctatc---tt----aaaaa----aaaaaaaaaaaaaagattacccggacgtggtggtgtgcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaatctggga-----------------------------------------------------------------------ggcagagcttgcagtgagctgagattgcgccactgcactccagcatgggtgacagagcaagactgcttctc------agaaaaaaaG--------------------------GATTAGTAATATCCTCTGTGTCACTTACCA---AAGTGGTTGAATCATGACTTGAAATTCATCATATCAAACATGGCTTAGAGTCTGTAGAG--GGG--ACAGTCCCAGGAATGCCGGTGTGGGCTTAAGGCTGAATTAAATAGATCCAgatagctcacacctgtaatcccaataccttgggaggccgaggcaggt-----------------ggatcacttgagctcctggagtGAagaaaggatgctagtggaagaactggtgaaatcagaataaagtctacagtttTATTTTTTAAAAGAggctgggtgtggtggcttatgcctgtaatctcagcaatttgggaggctgaggcgggcggatcagttgaggtcaggagttc
i nomLeu3.chr10             I 20981 C 0
s rheMac3.chr19              60557700 1008 +  64156825 cacctgAACTTAGAAAACTTTATAAATATTAAAATTGATGTTATGTATATTTTGCCACAATTTTTGAGAAGTACCTTGTGGTCTTTAGagagagtagatgagtggttgcctagggccgggaaagtgaggggatcatggtgatgggcagctgatgggcctggggttctgaagggcagtgatgacaacattctaaaattagactgtgttgacggttgcaccaactctttgaataccaccaaatctaagccattaaattatgcatttttaatgggtaattttatggcatgtaaattatatctcaatcaagttgtatttttaaaTACCAAAAAAAggccaggtgcggtggctcacacctgtaatcccagcactttgggaggccgagacaggcggatcacaaggtcaggagatcaagaccatcctggctaacatgatgaaaccccatctctact---aaaaaaaaaaattaccaaaaacaaaaaaaaattacctgggtgtagtggcgggtgcctgtagtcccagctattcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagctt-----------------------------------------------------------------------gcagtgagccgagatcgcgccgctgcactccagcctgggtgacagagcgagactcattctc-------aaaaaaaaaaaaaaT--------------------GATTAGTAATATCCTCTGTGTCACTTACCACTTAAGTGGTTGAGTCATGGCTTGAAATTCATCATCTCAAACATGGCTTACAGCCTGTAGATAGGGG--ACAGTCCCAGGAATGCAGGTGTGGGCTTAAGGCTGAATTAAATAGATCCAgatggctcacacctgtaatcccaatacctagggaggccgaggcaggt-----------------ggatcacttgagctcctggagCGAagaaaggatgttagtggaaaaactggtgaaatcagaataaagtctatagtttTATTTTTTAAAAGAggccaggcacagtgactcatgcctgcaatcccagcactttgggaggccgaggtgggtggataaactgaggtcaggagttc
i rheMac3.chr19             C 0 I 228
s macFas5.chr19              55684226 1014 +  59248254 cacctgAACTTAGAAAACTTTATAAATATTAAAATTGATGTTATGTATATTTTGCCACAATTTTTGAGAAGTACCTTGTGGTCTTTAGagagagtagatgagtggttgcctagggctgggaaagtgaggggatcatggtgatgggcagctgatgggcctggggttctgaagggcagtgatgacaacattctaaaattagactgtgttgacggttgcaccaactctttgaataccaccaaatctaagccattaaattatgcatttttaatgggtaattttatggcatgtaaattatatctcaatcaagttgtatttttaaaTACCAAAAAAAggccaggtgcggtggctcacacctgtaatcccagcactttgggaggccgagacaggcggatcacaaggtcaggagatcaagaccatcctggctaacatgatgaaaccccatctctactaaaaaaaaaaaaaattaccaaaaacaaaaaaaaattacctgggtgtagtggcgggtgcctgtagtcccagctattcgggaggctgaggcaggagaatggcgtgcacctgggaggcagagctt-----------------------------------------------------------------------gcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactcattctc----aaaaaaaaaaaaaaaaaT--------------------GATTAGTAATATCCTCTGTGTCACTTACCACTTAAGTGGTTGAGTCATGGCTTGAAATTCATCATCTCAAACGTGGCTTACAGCCTGTAGATAGGGG--ACAGTCCCAGGAATGCAGGTGTGGGCTTAAGGCTGAATTAAATAGATCCAgatggctcacacctgtaatcccaatacctagggaggccgaggcaggt-----------------ggatcacttgagctcCTGGAGCGAagaaaggatgttagtggaaaaactggtgaaatcagaataaagtctatagtttTATTTTTTAAAAGAggccaggcacagtgactcatgcctgcaatcccagcactttgggaggccgaggtgggtggataaactgaggtcaggagttc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47798185 1007 +  51301725 cacctgaacttagaaaactttataaatattaaaattgatattatgtatattttgccacaatttttgAGAAGTACCTTGTGGTCTTTAGAGAgagtagatgagtggttgcctAGGGCCAGGAAAGTGAGGGGATCATGGTGATGGGCAGCTGATGGGCCTGGGGTTCTGAAGGGCAGTGATGACAACATTCTAAAATTAGACTGTGTTGACGGTTGCACCAACTCTTTGAATACCACCAAATCTAAGCCAttaaattatgcatttttaatgggtaattttatggcatgtaaattatatctcaataaagttgtatttttaaataccaaaaaaagtccaggtgcagtggctcacacctgtaatcccagcactttgggaggccgagacaggcggatcacaaggtcaggagatcaagaccatcctggctaacatgatgaaaccccatccctact---aaaaaaaaaaatta-caaaaaaaaagaaaaattacctgggtgtagtggcgggtgcctgtagtcccagctattcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagctt-----------------------------------------------------------------------gcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactcattctc------aaaaaaaaaaaaaaat--------------------gattagtaATATCCTCTGTGTCACTTACCACTTAAGTGGTTGAGTCATGGCTTGAaattcatcatctcaaacatggCTTACAGCCTGTAGATA-GGG--ACAGTCCCAGGAATGCAGGTGTGGGCTTAAGGCTGAATTAAATAGATccagatggctcacacctgtaatcccaatacctagggaggccgaggcaggt-----------------ggatcacttgagctcctgGAGCGAAGAAAGGAAGttagtggaaaaactggtgaaatcagAATAAagtctatagttttattttttaaaagaggccaggcacagtgactcatgcctgtaatcccagcactttgggaggccgaggtgggcggataaactgaggtcaggagttc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47515054 1012 +  50890351 cacctgAACTTAGAAAACTTTATAAATATTAAAATTGATGTTATGTATATTTTGCCACAATTTTTGAGAAGTACCTTGTGGTCTTTAGagagagtagatgagtggttgcctagggccgggaaagtgaggggatcatggtgatgggcagctgatgggcctggggttctgaagggcagtgatgacaacattctaaaattagactgtgttgatggttgcaccaactctttgaataccaccaaatctaagtcattcaattatgcatttttaatgggtaattttatggcatgtaaattatatctcaataaagttatATTTTTAAATACCAAAAAAAggccaggtgcggtggctcatgcctgtaatcccagcactttgggaggccaagacgggcggatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaattccatctctact----aaagaaaaaatta-caaaaaaaaaaaaaaattacctgagtgtggtggtggattcctgtggtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagctt-----------------------------------------------------------------------gcagcgagccgagatcacgccactgcactccggcctgggtgacagagcgagactcgttctcaaaaaaaaaaaaaaaaaaaaaa--------------------GATTAGTAATATCCTCTGTGTCACTTACCGCTTAAGTGGTTGAGTCATGGCTTGAAATTCATCATCTCAAACATGGCTTAGAGTCTGTAGATA-GGG--ACAGTACCAGGAATGTAGGTGTGGGCTTAAGGCTGAATTAAATAGATCCAgatggctcacacctgtaatcccaatacctagggaggccgaggcaggt-----------------ggatcacttgagctcCTGGAGCGAagaaaggatgttagtggaaaaaccggtgaaatcagaataaagtctatagtttTATTTTTTAAAAGAggccaggtacagtgactcatgcctgtaatctcagcactttgggaggccgaggtgggtggataaactgaggtcaggagttc
i chlSab2.chr6              C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=364844.000000
s hg38.chr19_GL949751v2_alt    820122 212 +   1002683 gaaaccagcctggccaacttgacgaaaccccatctctactagaaatacaaaaattagctgggcgtggttgtgggtgcctctaatcccagctactcaggaagctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagctgagatcacaccattgcactccagcctgggct-acagagcaagattccatctccaaataagag-
s panTro4.chr19              59823071 212 +  63644993 aaaaccagcctggccaacttgacgaaaccccatctctactagaaatacaaaaactagctgggcgtggttgtgggtgcctctaatcccagctactcaggaagctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcacaccattgcactccagcctgggcg-acagagcaagactccatctccaaataaGag-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56736983 212 +  60714840 aaaaccagcctggccaacttgatgaaaccccatctctactagaaatacaaaaattagctgggcgtggttgtgggtgcctctaatcccagctactcaggaagctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcacaccattgcactccagcctgggcg-acagagcaagactccatctccaaaaaaGag-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103274440 212 - 106955855 aaaaccagcctggccaacttgacaaaatcccatctctactagaaatacaaaaattagctgggcgttgttgtgggtgcctctaatcccagctactcaggaagctgaggcaggagaatcgcttaaacccaggaggcggaggctgtagtgagctgagatcacaccattgcactccaacccgggcg-gcagagcaagactccatctccaaaaaaGag-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55685240 213 +  59248254 aaaaccagcctggccaacgtgacgaaatcccatctctgctagaaatacaaaaattagctgggcgcggttgtgggtgcctataatcccagctactcaggaagctgaggcaggagaatcgcttgaacgcaggaggcagaggttgcagtgagctgagattgcaccactgcactccagcctgggca-acagagcaagactccatctcacaaaaaaaaa
i macFas5.chr19             C 0 I 8
s papAnu2.chr19              47799192 213 +  51301725 aaaaccagcctggccaacgtgacgaAATCCCATTtctgctagaaatacaaaaattagctgggcgcggttgtgggtgcctataatcccagctactcaggaagctgaggcaggagaatcgcttgaacgcaggaggcagaggttgcagtgagctgagattgcaccactgcactccagcctgggca-acagagcaagactccatctcacacacacaca
i papAnu2.chr19             C 0 I 5
s chlSab2.chr6               47516066 212 +  50890351 aaaaccagcctggccaacatgatgaaaccccatctctattagaaatacaaaaatcagctgggcgcggttgtgggcgcctataatcccagctactcaggaagctgaggcaggagaatcgcttgaacgcaggaggc--aggttgcagtgagctgagattgcaccactgcactccagcctgggtgtgcagagcaagactccatctcacaaaaaaaaa
i chlSab2.chr6              C 0 I 9
e calJac3.chr22              45773030 96928 +  49145316 I
e rheMac3.chr19              60558708 228 +  64156825 I

a score=557549.000000
s hg38.chr19_GL949751v2_alt    820334 239 +   1002683 agacatgacaattaaataaattgtgtaatcttggattaaatcctaaaccaaatatatgtcactggtaaaacaagtggtgaaatttgaataaagtggatagatcagacaatagtgtcatatcagtgctatttcttgaccttgaacatta-----ataacagaatgtccttggttttgggaaatataacctgaagtgattagaggttta-gggcatcatatgcaaattagacacactttcttcgggg
s panTro4.chr19              59823283 239 +  63644993 agacatgacaattaaataaattgtgtaatcttggattaaatcctaaaccaaatatatgtcactggtaaaacaagtggtaaaatttgaatacagtggatagatcagacaatagtgtcatatcagtgctatttcttgaccttgaacatta-----ataacagaatgtccttggttttgggaaatataacctgaagtgattagaggttga-gggcatcatatgcaaattagacacactttcttggggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56737195 241 +  60714840 agacatgacaat----taaattgtgtaatcttggattaaatcctaagccaaatatatgtcactggtaaaacaagtggtgaaatttgaattaagtggataggtcagacaatagtgtcacatcagtgctatttcttgatcttgaacatcaataacataacagaatgtccttggttttgggaaatataacctgaagtgattagaggtTTATTTTCATCATATGCAAATTAGACATACTTTTTTGGGGG
i ponAbe2.chr19             C 0 I 74
s nomLeu3.chr10             103274652 239 - 106955855 agacatgacaattaaataaattgtgtaatcttggattaaatcctaaaccaaatatatgtcactggtaaaacaagtggtgaaatttgaataaagtggatagatcagacaatagtgtcatatcagtgctatttcttgaccttgaacatcaataacataacagaatgtccttggttttgggaagtataacctgaagtgattaaaggttta-gggcatcatatgcaaattagacatactttttt-----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60558936 244 +  64156825 agacatgacagttaaataaattgtgtaatcttgaattaaatcctaaaccaaatacatgtcactggtaaaacaagtggtgacgtttgaataaagtggatagatcagacaatagtgccatatcagtgatatttcttgaccttgaacatcagtaacatagaagaatgtccttggttttaggaactataacctgaagtgattagaggttta-gggcatcatatgcaaattagacacacttttttcgggg
i rheMac3.chr19             I 228 C 0
s macFas5.chr19              55685461 244 +  59248254 aaacatgacaattaaataaattgtgtaatcttgaattaaatcctaaaccaaatacatgtcactggtaaaacaagtggtgacgtttgaataaagtggatagatcagacaatagtgccatatcagtgatatttcttgaccttgaacatcagtaacatagcagaatgtccttggttttaggaactataacctgaagtgattagaggttta-gggcatcatatgcaaattagacacacttttttcgggg
i macFas5.chr19             I 8 C 0
s papAnu2.chr19              47799410 244 +  51301725 agacatgacaattaaataaattgtgtAATCTTGAATTAAATCCTAAACCAAATACATGTCACTGGTAAAACAAGGGGTGACATTTGAATAAAGTGGATAGATCAGACAATAGTGCCATATCAGTGACATTTCTTGACCTTGAACATCAGTAACATAGCAGAATGTCCTTGGTTTTAGGAACTATAACGTGAAGTGATTAGAGGTTTA-GGGCATCATATGCAAATTAGACACACTTTtttggggg
i papAnu2.chr19             I 5 C 0
s chlSab2.chr6               47516287 244 +  50890351 aaacatgacaattaaataaattgtgtaatcttgaattaaatcctaaaccaaatacatgtcactggtaaaacaagtggtgacatttgaataaagtggatagatcagacaatagtgccatatcagtgatatttcttgaccttgaacatcagtaacagagcagaatgtccttggttttaggaactataacctgaagtgattagaggttta-gggcatcacatgcaaatcagacacacttttttggggg
i chlSab2.chr6              I 9 C 0
e calJac3.chr22              45773030 96928 +  49145316 I

a score=292397.000000
s hg38.chr19_GL949751v2_alt    820573 177 +   1002683 agagagggagagggagagaggctgaatgatgaagcaaatgtggtaaaatgctaactttggggaaatctggatgaagaaattacagat---ttttttttttttt------------atagacagggtaacactctgtcacccaggctagagtgcagtggcacgatcatggctcactgcagcttctacctccct
s panTro4.chr19              59823522 189 +  63644993 agagagggagagggagagaggctgaatgatgaagcaaatgtggtaaaatgctaactttgggggaatctggatgaagaaattacagat---ttttttttttttttttttttttttaatagacagggtaacactctgtcacccaggctagagcgcagtggcacgatcatggctcactgcagcttctacctccct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103274891 173 - 106955855 -----gggggagggagagaggctgaatgatgaagcaaatctggcaacatgctaactttggggaaatctggatgaagaaattacagaa---tttttttttttttt-----------agagacagggtaatactctgtcacccaggctagagtgcagtggcacgatcatggctcactgcagcttctacctcact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60559180 176 +  64156825 ----agagagagggagaaaggctgaatgatgcagcaaatggagtaaaatgctaactttggggaaatctggatgaagaaattacagaa-tttttttttttttttt-----------aaagagagggtctcactctgtcacccaggctagagtgcagtggcacgatcatggctgactgcagcttctacctccgt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55685705 173 +  59248254 ----agagagagggagaaaggctgaatgatgcagcaaatggagtaaaatgctaactttggggaaatctggatgaagaaattacagaa----ttttttttttttt-----------aaagagagggtctcactctgtcacccaggctagagtgcagtggcacgatcatggctgactgcagcttctacctccct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47799654 174 +  51301725 ----agagagaggaagaaaggctgAATGATGCAGCAAATGGAGTAAAATGCTAACTTTGGGGAAATCTGGATGAAgaaattacagaa---tttttttttttttt-----------aaagacagggtctcactctgtcacctaggctagagtgcagtggcacgatcatggctgactgcagcttctacctccct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47516531 177 +  50890351 ----agagagagggagaaaggctgaatgatgcagcaaatggagtaaaatgctaactttggggaaatctggatgaagaaatcacagaattttttttttttttttt-----------acagacagggtctcactctgtcacccaggctagagtgcagtggcacgatcatggctgactgcagcttctacttccct
i chlSab2.chr6              C 0 C 0
e ponAbe2.chr19              56737436  74 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I

a score=728062.000000
s hg38.chr19_GL949751v2_alt    820750 310 +   1002683 gggctcagatgaccctctcacctcagcctcccaagtagctgggactataggcgcacagcaccacacctggctaa-tttttgcatttttttttc-ccccaggctcgtctcaagcaatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggccagaaattctttaaactatttttgc------------aagtctggaattatgtcaaaattaaaaGCTCAAAATAATAA--AAGACAATATTCTTATATTTCTTTGGTGAAGGTAACTATGTTATGGCTGAGAGGGTGGCTGAGGTCTGAGGA
s panTro4.chr19              59823711 321 +  63644993 gggctcagatgaccctctcacctcagtctcccaagtagctgggactataggcacacagcaccacacctggctaa-tttttgcatttctttttc-ccc-aggctcatctcaagcaatccacccacctcggcctcccaaagtgctaggattacaggtgtgagccactgcacctggccagaaattatttatactatttttgccagtttttttgtaagtctggaattatgtcaaaattaaaaGCTCAAAATAATAA--AAGACAATATTCTTATATCTATTTGGTGAAGGTAACTATGTTATGGCTGAGAGGGTGGCTGAGGTCTGAGGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56737510 321 +  60714840 gggctcagatgaccctctcacctcagcctcccaagtaggtgggactacaggcacatagcaccacacctggctaa-tttttgcatgtttttttc-ccc-aggctggtctcaagcaatctacccacctcggcctcccaaagtgctaggattacaggtgtgagccactgcgtctggccAgaaattctttaaactatttttgccagtttttttgtaagtctggaattatgtcaaaattaaaagctcaaaaTAATAA--AAGACAATATTCTTATATTTATTTGGTGAAGGTAACTATGTTATGGCTGAGAGGGGGGCTGAGGTGTGAGGA
i ponAbe2.chr19             I 74 C 0
s nomLeu3.chr10             103275064 316 - 106955855 gggctcagatgaccctctcacctcagcctcccaagtagctgggactacaggcacacagcaccacacctagctaa-tttttgtatatttttctt-ccccaggctggtctcaagcaatccacccaccttggcctcccaaagtgctaggattacaagtgtgagccactgcgcctggccagaaattctttaaactatttttgccagtttttttgtaagtctggaattatgtcaaaattaaaaGCTCAAAATAATAA--AAGATAA------TATATTTATTTGGTGAAGGTAATTATGTTACGGCTGAGAGGGGGGCTGAGGTGTGAGGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60559356 324 +  64156825 gggctccgatgaccctctcacctcagcctcccaagtagctgggactacaggcacacagcaccacacctgactaattttttgcatttttttttt-ccc-agactggtcccaagcaattcatccacctcagcctcccaaagtgctaggactacaggtgtgagccactgtgcctcgccagaaattctttaaactatttttgccagtttttttgtaagtctggaattatgtcacaattaaaaGCTCaaaataataataaaaaaaatattCTTCTATTTATTTGGTGAAGGTAACTATGTTATGGCTGAGAGGGGGGCTCAGGTGTGAGGA
i rheMac3.chr19             C 0 I 2
s macFas5.chr19              55685878 325 +  59248254 gggctccgatgaccctctcacctcagcctcccaagtagctgggactacaggcacacagcaccacacctgactaattttttgcattttttttttcccc-agactggtcccaagcaattcatccacctcagcctcccaaagtgctaggactacaggtgtgagccactgtgcctcgccagaaattctttaaactatttttgccagtttttttgtaagtctggaattatgtcacaattaaaaGCTCAAAATAATAATTAAAAAAGTATTCTTATATTTATTTGGTGAAGGTAACTATGTTATGGCTGAGAGGGGGGCTCAGGTGTGAGGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47799828 324 +  51301725 AGGCTCTGatgaccctctcacctcagcctcccaagtagctgggactacaggcacgcagcaccacacctgactaattttttgcatttttttttt-ccc-agactggTCCCAAGCaattcatccacctcagcctcccaaagtgctaggactacaggtgtgagccactgtgcctcgccaGAAATTCTTTAAACtatttttgccagtttttttGTAAGTCTGGAATTATGTCACAATTAAaagctcaaaataataataaaaaaagtattcttatatttatttggtGAAGGTAACTATGTTATGGCTGAGAGGGGGGCTCAGCTGTGAGga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47516708 324 +  50890351 gggctccgatgaccctctcacctcagcctcccaagtagctgggactacaggcacgcagcaccacacctgactaattttttgcatttttttttt-ccc-agactggtcccaagcaattcacccacctcagcctcccaaagtgctaggactacaggtgtgagccactgtgcctcgccagaaattctttgaactatttttgccagtttttttgtaagtctggaattatgtcacaattaaaaGCTCAAAATAATAATAAAAAAAGTATTCTTATATTTATTTGGTGAAGGTAACTATGTTATGGCCAAGAGGGGGGCCCAGGTGTGAGGA
i chlSab2.chr6              C 0 I 2
e calJac3.chr22              45773030 96928 +  49145316 I

a score=1288.000000
s hg38.chr19_GL949751v2_alt    821060 2 +   1002683 TC
s panTro4.chr19              59824032 2 +  63644993 TC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56737831 2 +  60714840 CT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103275380 2 - 106955855 CC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55686203 2 +  59248254 CC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47800152 2 +  51301725 cc
i papAnu2.chr19             C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47517032 2 +  50890351 I
e rheMac3.chr19              60559680 2 +  64156825 I

a score=76787.000000
s hg38.chr19_GL949751v2_alt    821062 154 +   1002683 CAGCCTACATAAGTCTCCTCCATAG-AGGGCATCCAAGCGCTCCGTAGGGGGAAGGATAAAGAAAACACCCAGAGTTATGACAGCTGTGTAAGGGGAAACGCCAGCACCGAGTACTGAATCTTCAGTAAATAAGAAGGAGGCGggctgggtgtgg
s panTro4.chr19              59824034 154 +  63644993 CAGCCTACATAAGTCTCCTCCATAG-AGGGCATCCAAGCGTTCCATAGGGGGAAGGATAAAGAAAACACCCAGAGTTATGACAGTTGTGTAAGGGGAAACACCAGCACCGAGTGCTGAATCTTCAGTAAATAAGAAGCAGGTGggctgggtgtgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56737833 155 +  60714840 GAGTCTACATAAGTCCCCTCCATAGAAGGGCATCCAAACGCTCCATAGGGAGAAggataaagaaaacacccagagttatgacagttgtgtaaggggaaacgccagcaccgagtgctgaatcttcagtaaataagaaggagGTGggctgggtgcgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103275382 153 - 106955855 CAGCCTACATAAGTCTCTTCCATAGAAGGGCATCCAAGCGTTCCATAGGGGGAAGGATAAAGAAAACACCC--AGTTATGACAGTTGTGTAAGGGGAAACGCCAGCACCCAGTGTTGAATCTTCAGTAAATAAGAAGGAGGTCggctgggtgcgg
i nomLeu3.chr10             C 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47517032   2 +  50890351 I
e papAnu2.chr19              47800154   0 +  51301725 C
e macFas5.chr19              55686205   0 +  59248254 C
e rheMac3.chr19              60559680   2 +  64156825 I

a score=884478.000000
s hg38.chr19_GL949751v2_alt    821216 391 +   1002683 tggctcacgcctgtaatcccagcactttgggaggctaaagtgggctgatcacttgaggtcaagagttcgagactagcctggccaacatggggaaaccctgtctctactaaaaatacaaaaattagtcgagtgtggtggcacac----------------------------------gcctgtaatcccagctacttgggaggctagaacaggagaattgcttgaacccaggaggtgaaggttgcagtgagctgagattgcaccactgcaccccagcttgagggacagagtgagattccgtcttaaagagaaaaaaaaaagaaTTAGCACATTTGTTTGCCTCAAGAAGATACAACTAGTCTTGTAcagtagtcacatgtatccaccaggatatattccaaggccccagtggatgctgaaaacta
s panTro4.chr19              59824188 391 +  63644993 tggctcaagcctgtaatcccagcactttgggaggctaaggtgggctgatcacttgaggtcaagagttcgagactagcctggccaacgtggggaaaccctgtctctactaaaaatacaaaaattagtcgagtgtggtggcacac----------------------------------gcctgtaatcccagctactcggaaggctagaacaggagaactgcttgaacccaggaggtggaggttgcagtgagctgagattacaccactgcaccccagcttgagggacagagtgagattccgtcttaaagagagaaaaaaaagaaTTAGCACATTTGTTTGCCTCAAGAAGATACAACTAGTCTTGTAcagtagtcacatgtatccaccaggatatatttcaaggccccagtggatgctgaaaactg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56737988 423 +  60714840 tggctcaagcctgtaatcccagcactttgggaggctaaggtgggctgatcacttgaggtcaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattggtcgagtgtggtggcacacgcctgtaatcccagctactcaggaggttgcacatgcctgtaatcccagctactcgggaggctagaacaggagaattgcttgaacccaggaggtggaggttgcagtgagctgagattgcaccactgcaccccagcttgagggacagagcgagattccatcttaaagag--aaaaaaaagaaTTAGCACATTTGTTTGCCTCAAGAAGATACAACTAGTCTTGTACAGTAGTCACATGTATCCATCAggatatattccaaggccccagtggatgctgaaaacta
i ponAbe2.chr19             C 0 I 76
s nomLeu3.chr10             103275535 369 - 106955855 tggctcaagcctgtaatcccagcactttgggaggctaagatgggccaatcacttgaggtgaggagttcgagactagcctggccaacatggtgaaaccctgtctctactaaaaa-acaaaaattagtcaagtgtggtggcactc------------------------------------------------------gggaggctagaacaggagaattgcttgaacccaagaggtggaggttgcagtgagctgagattgcaccactgtaccccagcttgagggacagagcgagattccatcttaaagaggaaaaaaaaGGAATTAGCACATTTGTTTGCCTCAAGAAGATACAACTAGTCTTG-ACAGTAGTCATATGtatccaccaggatacattccaaggccccagtagatgctgaaaacta
i nomLeu3.chr10             C 0 I 2
s rheMac3.chr19              60559682 390 +  64156825 tggctcacgcctgtaatcccagcactttgggaggccaaggtgggccgatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctattaaaaatacaaaaattagtcgggtgtggtggcatgc----------------------------------acctgtaatcccatctactcaggaggctacgacaggagaattccttaaacccaggaggtggaggttgcagtgagctgagatcacaccattgcaccccagtttgagggacagagtgagacgccatcttaaag-aaaaaaaaaaagaaTTAGCACATTTGTTTGCCCCAAGAAGATACAACTAGTCATGTAcagtagttacctgtatccaccaggatacattccaaggccccagtgaatgctgaaaacta
i rheMac3.chr19             I 2 I 1699
s macFas5.chr19              55686205 390 +  59248254 tggctcatgcctgtaatcccagcactttgggaggccaaggtgggccgatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctattaaaaatacaaaaattagtcgggtgtggtggcatgc----------------------------------acctgtaatcccagctactcaggaggctacgacaggagaattccttaaacccaggaggtggaggttgcagtgagccgagatcacaccattgcaccccagtttgagggacagagcaagacgccatcttaaag-aaaaaaaaaaagaaTTAGCACATTTGTTTGCCCCAAGAAGATACAACTAGTCTTGTACAGTAGTTACCTGTATCCACCAGGATACATTCCAAGGCCCCAGTGAATGCTGAAAACTA
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47800154 389 +  51301725 tggctcacgcctgtaatcccagcactttgggaggccaaggtgggccgatcacttgaggtcaggagttcaagaccagcctggccaatatggtgaaaccctgtctctattaaaaatacaaaaattagtcgggtgtggtggcatgc----------------------------------acctgtaatcccagctactcaggaggctacgaCAGGAGAAttccttaaacccaggaggtggaggttgcagtgagctgagatcacaccattgcaccccagtttgagggacagagcaagacgccatcttaaag--aaaaaaaaaagaattagcacaTTTGTTTGCCCCAAGAAGATACAACTAGTCTTGTACAGTAGTTACCTGTACCCACCAGGATACATTCTAAGGCCCCAGTGAATGCTGAAAACTT
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               47517034 391 +  50890351 tggctcacgcctgtaatcccaacactttgggaggccaaggtgagccgatcacttgaggtcaggagttcaagacaagcctggccaacatggtgaaaccctgtctctattaaaaatacaaaaattagtcgggtgtggtggcgggt----------------------------------gcctgtaatcccagctactcaggaggctacgacaggagaattccttaaacccaggaggtagaggttgcagtgagccgagatcacaccattgcaccccagtttgagggacagagcgagacgccatcttaaagaaaaaaaaaaaagaaTTAGCACATTTGTTTGCCCCAAGAAGATAAAACTAGTCTTGTACAGTAGCTACCTGTATCCACCAGGATACATTCCAAGGCCCCAGTGAATGCTGAAAACTA
i chlSab2.chr6              I 2 I 853
e calJac3.chr22              45773030 96928 +  49145316 I

a score=2823.000000
s hg38.chr19_GL949751v2_alt    821607 13 +   1002683 catagtaccttac
s panTro4.chr19              59824579 13 +  63644993 catagtaccttac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103275906 13 - 106955855 catactaccatac
i nomLeu3.chr10             I 2 I 4
s macFas5.chr19              55686597  8 +  59248254 CATAGTGT-----
i macFas5.chr19             I 2 C 0
s papAnu2.chr19              47800545  8 +  51301725 catagtgt-----
i papAnu2.chr19             I 2 C 0
e ponAbe2.chr19              56738411 76 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47517425 853 +  50890351 I
e rheMac3.chr19              60560072 1699 +  64156825 I

a score=1798.000000
s hg38.chr19_GL949751v2_alt    821620 11 +   1002683 atgt--------atatata
s panTro4.chr19              59824592 19 +  63644993 atgtgtatatatatatata
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55686605 11 +  59248254 --------Gtacatatata
i macFas5.chr19             C 0 I 242
s papAnu2.chr19              47800553 11 +  51301725 --------gtgtgtatata
i papAnu2.chr19             C 0 C 0
e ponAbe2.chr19              56738411 76 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103275919  4 - 106955855 I
e chlSab2.chr6               47517425 853 +  50890351 I
e rheMac3.chr19              60560072 1699 +  64156825 I

a score=45850.000000
s hg38.chr19_GL949751v2_alt    821631 450 +   1002683 tatgt-atatacatatatacacatat--------------acgtatatgt----------------------atacatac---atgtatatatgcatgtatgtat----atacatatatgcatatatacatacatgtatatatacatg-tatgtatatacatata----tgtatatgtatgtatacacgcatacatgtat------------gtat------acacg----------catatat----gta-tgtatatac------------atatatgtatgtatacacgcata-catgtatg--tatatacatatatgtatgtatacacgcata-catg-tgtgtataca---tatatatgcatgt-atgcat---gtgtgtata----tatacatatatgt----gtatatatacgcatatacat---gtatgtgtatatatgcat----gtgtatatatacatgtacggtactatgcagtatatata-------------cacatatatgtatatatgtatacatatatgtataaatgtatatatgt------------------------gtatatatataaaaggtatatatgtatatatg
s panTro4.chr19              59824611 577 +  63644993 tatgt-atatacatatatacatatatgtatatgtgtatatacgtatatgtgtatatatgtatacatgcatgcatacatgc---atgtatatatacatgtgtgtgtgcgcatacatgtatgtatatatgcatgtatgtatatatgcata-catgtatgtgtatata----catatatgtatgtatgcgcgcatacatgtatatgtacatatatgtatgcatgCACACGTGTGTGTGTACATATAT----GTA-TTTATACACGCATGCgtatatatacatgtatgtatacacgcata-catgtgtgcatatatacatgtatgtatatatgcacgcatg-catg-tatatatacg---tatgtatatatgc-acgcat---gcatgtata----tgtatatatacgtacatgtatatgcgcacatatacat---gtatgtgtatatatacatatatgtgtatatatacatgtacggtactatgcagtatatatatgcggtatatatacgcatatatgtatatatgtatacatatatgtataaatgtatatatgtataaatgtataaatgtatatatgtgtatatatataaaaggtatatatgtatatatg
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55686858 451 +  59248254 tatataatatatattt-tttatatgt--------------a---atatttttatatatattttta-------atatgtaatatatatataaatat---tatatat-----taaaaatatata-atatttataatattatatataaatattacatataaaaatatataatattatatataaatat-------tacatata-----------------------aaaaa----------tatataatattata-tataaatat-------------------tacatataaaaatatataatat-tatatataaatat-----tacatataaaaatatataatattatatataaatattatatataaatattatatataaaaaatatataatattatatataaatat-----tatatataaaaatatatattatctataaatatataaatat-------tatctataaatatata---------aatatataaa-----taaatatataaatatatataaatatataaatat-tatatataaatatataaatat---------------------------tatatataaaa-atatatataaaac--ta
i macFas5.chr19             I 242 C 0
s papAnu2.chr19              47800564 365 +  51301725 tatat-atataaatat-tatatatat--------------a---atatt-----------------------atatataa---atatataaatat---tatatat----ataatattatatataaatatataatattatatataaatattatatataaatatata----aatatatataaacat--------------------------------------ataaa----------tatataa----atattataaacat-------------------tatgtataaatatata-aatat-----tataaacat-----tatatat---attata-aacattatatataaa---tatatataaacactatatat---aaatatata--aatatatataaacat-----tatatataaatatataaat---------atatataaacat-------tatatataaatatata---------aacat------------------------------tatatataaatat-tatatataaatatataa--------------------------------atatataaaatatatatataaaactata
i papAnu2.chr19             C 0 C 0
e ponAbe2.chr19              56738411  76 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e nomLeu3.chr10             103275919   4 - 106955855 I
e chlSab2.chr6               47517425 853 +  50890351 I
e rheMac3.chr19              60560072 1699 +  64156825 I

a score=22098.000000
s hg38.chr19_GL949751v2_alt    822081 31 +   1002683 tgtgtatatataAAATGCATGAATTTCTTTT
s panTro4.chr19              59825188 31 +  63644993 tgtgtatatataAAATGCATGAATTTCTTTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103275923 31 - 106955855 tatatatatatATAATgcatgattttttttc
i nomLeu3.chr10             I 4 I 30
s macFas5.chr19              55687309 31 +  59248254 tatatatataAaaaacgcatggatttctttt
i macFas5.chr19             C 0 I 33
s papAnu2.chr19              47800929 31 +  51301725 tatatatatataaaacgcatggatttctttt
i papAnu2.chr19             C 0 I 33
e ponAbe2.chr19              56738411 76 +  60714840 I
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47517425 853 +  50890351 I
e rheMac3.chr19              60560072 1699 +  64156825 I

a score=606260.000000
s hg38.chr19_GL949751v2_alt    822112 366 +   1002683 ttcttactgtagatcttaacaacttctgcatagaatttttttttattaagtggagagttagttacttacttaaaagaaATGTTTCTTggctgggtgtggtggctcacacctgtaatcccagcactttgagaggccgaggcaggaagattcacttgaggtgaggagttggagaccatcctggccaacgtggtaaaaaccggtctctactaaaagtacaaaaatgagctgggcgtggtgttgggtgtctgtagtcccagctactcaggtggctgaggcaggagaattgcttgaacccacaaggcagaggttgcagtgagctgagatcacaccactgcaccacagcctgggcaacagagcaagactctg
s panTro4.chr19              59825219 363 +  63644993 ttcttactgtagatcttaac---ttctgcatagaatttttttttattaagtggagagttagtaacttacttaaaagaaATGTTTCTTggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggcaggaagattcacttgaggtaaggagttagagaccatcctggccaacatggtaaaagctggtctctactaaaagtacaaaaatgagctgggcgtggtgttaggtgtctgtagtcccagctactcaggtggctgaggcaggagaattgcttgaacccacaaggcagaggttgcagtgagctgagatcacaccactgcaccacagcctgggcaacagagcaagactctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56738487 361 +  60714840 ttcttactgtagatcttaacaacttctgcatagaa-ttttttttattaagtgaagaGTTAG----TTACTTAAAAGAAATGTTTCTTggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggtggaaagattcacttgaggtgaggagttcgagaccagcctgggcaacgtggtaaaacccagtctctactaaaagtacaaaaatgagctgggcgtggcgttgagtgtctgtagtcccagctactcaggtggctgaggcaggagaattgcttgaacctacgaggcagaggttgcagtgagctgagatcacaccactgcaccgcagcctgggcaacagagcaagactctg
i ponAbe2.chr19             I 76 C 0
s nomLeu3.chr10             103275984 359 - 106955855 ttcttaccgtagatcttaacaacttctgcatagaa-ttttttttattaagtggagaGTTAG----TTACTT--AAGAAATGTTTCTTggctgggcgtggtggctcacacctgtaatcccagcactttgggagggtcaggcaggaagagtcacttgaggtgaggagttcaagaccagcctggccaacgtggtaaaacccggtctctactaaaagtacgaaaatgagctgggcatggtgttgggtgtctgtagtgccagctactcaggtggctgaggcaggagaattgcttgaacccacgaggcagaggttgcagtgagccgagatcacaccactgcaccacagcctgggcaacagagcaagactctg
i nomLeu3.chr10             I 30 C 0
s rheMac3.chr19              60561771 362 +  64156825 ttcttactgtagatcttaacaacttctgcatagaa-ttttttttattaagtg--gagttagttacttacttaaaagaTATGTTTCTTggccgggcgtggtggttcacacctgtaatcccagcactttgggaggccgagacgggaagattgacttgaggtcaggaaatccagaccagcctggccaacgtggtgaaagcccgtctctact-aaagtacaaaaatgagccaggcgtggtgttgggcatctgtagtcccagctactcgggaggctgaggcaagagaatcgcttgaacctgggagacggcggttgtggggaacaaagatcgcaccactgcaccacagcctgggggacagagcaagactctg
i rheMac3.chr19             I 1699 C 0
s macFas5.chr19              55687373 363 +  59248254 ttcttactgtagatcttaacaacttctgcatagaa-ttttttttattaagtg--gagttagttacttacttaaaagaTATGTTTCTTggccgggcgtggtggttcacacctgtaatcccagcactttgggaggccgagacgggaagattcacttgaggtcaggaaatcaagaccagcctggccaacgtggtgaaagcccgtctctactaaaagtacaaaaatgagccaggcgtggtgttgggtgtctgtagtcccagctactcgggaggctgaggcaagagaatcgcttgaacctgggagacggcggttgcagtgaacaaagatcgcaccactgcaccacagcctgggggacagagcaagactctg
i macFas5.chr19             I 33 C 0
s papAnu2.chr19              47800993 363 +  51301725 TTCTTACTGTAGATCTTAACAACTTCtgcatagaa-ttttttttattaagtg--GAGTTAGTTACTTACTTAAACGATATgtttcttggccgggcatggtggttcacacctgtaatcccagcactttgggaggccgaggcgggaagattcacttgaggtcaggaaatcaagaccagcctggccaacgtggtgaaaccctgtctctactaaaagtataaaaatgagccgggcgtggtgttgggtgtctgtagtcccagctactcgggaggctgaggcaagagaatcgcttgaacctgggagacggaggttgcagtgaacaaagatcgcaccactgcaccacagcctgggggacagagcaagactctg
i papAnu2.chr19             I 33 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47517425 853 +  50890351 I

a score=84314.000000
s hg38.chr19_GL949751v2_alt    822478 75 +   1002683 tctcaaaaaaaaaaaaaaaagaaagaaaaagaaaAAGAAAAGAAATGTTTCTTTTCTTATTAAGTTCTTTAAATG
s panTro4.chr19              59825582 75 +  63644993 tctcaaaaaaaaaagaaaaaagaaaaaaaagaaaAAGAAAAGAAATGTTTCTTTTCTTATTAAGTTCTTTAAATG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56738848 53 +  60714840 tctcaaaaaaaaaaa----------------------aaaagaaaaGTTTCATTTCTTATTAAGTTCTTTAAATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103276343 47 - 106955855 tctcaaaaa----------------------------aaaagaaaTGTTTCTTTTCGTATTAAGTTCTTTAAATG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60562133 64 +  64156825 tctcaaaacaaaaaaaaaa-----------gaaaaagaaaggaaaTGTTTCTTTTCTTATGAAGTTCTTTGAATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55687736 64 +  59248254 tctcaaaaaaaaaaaaaaa-----------gaaaaagaaaggaaaTGTTTCTTTTCTTATGAAGTTCTTTGAATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47801356 63 +  51301725 tctcaaaaaaaaaaaaaaa------------aaaaagaaaggaaatgtttcttttcttatgaagttttttgaatg
i papAnu2.chr19             C 0 C 0
s canFam3.chr1               19987813 51 - 122678785 tttcaaaaaaagaaaaaAA-----------AGAAGGCAAAAAGAATA-------------AAGATTACTTAAAAA
i canFam3.chr1              N 0 C 0
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47517425 853 +  50890351 I

a score=404331.000000
s hg38.chr19_GL949751v2_alt    822553 154 +   1002683 AAAAGCTTTTCTTTTCACTTTTATTTTATTGAAACATTATAACACT-------ATCTTTGAAGAAGTTAGTGTTATCATTCCATTCTGATGAAACCAATTAACTTATCCAAGCATATGTATACTGTACACAGAGAAGCCAACGTCAAAACCCCTattttta
s panTro4.chr19              59825657 154 +  63644993 AAAAGCTTTTCTTTTCACTTTTATTTTATTGAAACATTATAACACT-------ATCTTTGAAGAAGATAGTGTTATCATTCCATTCTGATGAAACCAATTAACTTATCCAAGCATATGCATGCTGTACACAGAGAAGCCAACGTCAAAACCCCTattttta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56738901 154 +  60714840 AAAAGCTTTTCTTTTCACTTTTATTTTAGTGAAACATTATAACACT-------ATCTTTGAAGAAGATAGTGTTATCATTCCATTCTGATGAAACCAATTAACTTATCCAAGCATATGCATGCTGTACACAGAGAAGCCAACATTAAAACCCCTattttta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103276390 153 - 106955855 -AAAGCTTTTCTTTTCACTTTTATTTTATTGAAACATTATAACACC-------GTATTTGAAGAAGATAGTGTTATCATTCCATTCTGATGAAACCAGTTGACTTATCCAAGCATATGCATGCTGTACACAGAGGAGCCAACGTTAAAACCCCTattttta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60562197 152 +  64156825 AAAAGCTTTTCTTTTCACGTTTATTTTATTGAAACATTATAGCACT-------ATCTTTGAAGAAGAC--TGTTATCATTCCATTCTGATTAAACCAATTAACTTATCCAAGCATATGTATGCTGTACGCAGAGGAGCCAGCGTTAAAACCCCTattttta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55687800 152 +  59248254 AAAAGCTTTTCTTTTCACGTTTATTTTATTGAAACATTATAGCACT-------ATCTTTGAAGAAGAC--TGTTATCATTCCATTCTGATTAAACCAATTAACTTATCCAAGCATATGTATGCTGTACGCAGAGGAGCCAGCGTTAAAACCCCTattttta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47801419 152 +  51301725 aaaagcttttcttttcacgtttattttattgaaacattATAGCACT-------ATCTTTGAAGAAGAC--TGTTATCATTCCATTCTGATTAAACCAATTAACTTATCCAAGCATATGTATGCTGTACACAGAGGAGCCAGCGTTAAAACccctattttta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47518278 152 +  50890351 aaaaGCTTTTCTTTTCACATTTATTTTATTGAAACATTATAGCACT-------ATCTTTGAAGAAGAC--TGTTATCATTCCATTCTGATTAAACCAATTAACTTATCCAAGCATATGTATGCTGTACACGGAGGAGCCAGCGTTAAAACCCCTattttta
i chlSab2.chr6              I 853 C 0
s canFam3.chr1               19987864 142 - 122678785 ----------------AATTGCATTTTGTTGAAACATTGTAAAGATTCTCCAAATCTTTGGAGAACATAGTGTT---ATTTCATTCTGATGAAACCAATTAACTGATCCAATCATATGTATACAAAACAAAGAGGAGCCAAGATTAAACACAAAGTTTTTA
i canFam3.chr1              C 0 I 156
e calJac3.chr22              45773030 96928 +  49145316 I

a score=1979586.000000
s hg38.chr19_GL949751v2_alt    822707 874 +   1002683 tctttttagattcagcagatacatgtgcaggttttt---tatgagtatattgcatgatgctgaggcttgcattaatgatctagtc--------------------accaaataggtagattttcaagccttgctcccctccttacccaatgtttagcgctctcacttataagtgagaacatgtggtatttggttttcttttctttt--ttttttttttttttgagatggagtttcactcttgttgcccaggctggagtacaatggcaccatctcggctcactgcaaccttcaccttccaggttcaagcaattctcctgcctcagcctcccgagtagttgggactacaggcatgtgccaccacacccggctaattttgaatttttagtagagacagggtttctgcatgttggtcaggctggtctcgaactcccgacctaaggtgatccacctgcctcagcctcccaaagtgctgggatgacaggcgtgagccaccgtgtctggccagtatttggttttctgtttctgtgttaactcgcttaggataatggcctctagctgcatccatgttgctgcaaaggacataatcttgtgatttttcaaggctgtatagcgttctgtggtgtatacatatcacattgtctttatccagtccacctctgatgggacctgggtggattccatgtcttcactattgtgaatcctgctgcaatgaacatacaagtgcatgtgtctttttggtagaatgatttattttcctttggctatatacccagcgatgggattgctgggctgaatggtaactctgtttgtagttctctgaaatatctccaaaccaaactgctttccacagtggctgaactaatttacac--ccaccaacagtgtataagtgtcccctttg
s panTro4.chr19              59825811 878 +  63644993 tcttcttagattcagcagatacatgtgcaggttttt---tatgagtatattgcatgatgctgaggcttacattaatgatctagtc--------------------accaaataggtagattttcaagccttgctcccctccttacccaatgtttagcgctctcacttataagtgagaacatgtggtatttggttttcttttcttttctttttttttttttttgagatggagtttcactcttgttgcccaggctggagtacaatggcaccatctcggctcactgcaaccttcacctcccaggttgaagcaattctcctgcctcagcctcccgagtagttgggactacaggcatgtgccaccacgcccggctaattttgtatttttagtaaagacagggtttctgcatgttggtcaggttggtctcgaactcctgacctaaggtgatccacctgcctcagcctcccaaagtgctgggatgacaggcgtgagccaccgcgtctggccagtatttggttttctgtttctgtgttaactcgcttaggataatggcctctagctgcatccatgttgctgcaaaggacataatcttgtgatttttcaaggctgtatagcgttctgtggtgtatacatatcacattgtctttatccagtccacctctgatgggacctgggtggattccatgtcttcactattgtgaatcctgctgcaatgaacatacaagtgcatgtgtctttttggtagaatgatttattttcctttggatatatacccagtgatgggattgctgggctgaatggtaactctgtttgtagttctctgaaatatctccaaaccaaactgctttccacagtggctgaactaatttacactcccaccaacagtgtataagtgtcccctttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56739055 869 +  60714840 tctttttagactcagcagatacatgtgcaggtttttttatatgagtatattgcatgatgctgaggcttgcattaatgatccagtc--------------------accaaataggtagattttcaagccttgctcccctccttacccaatgtttaacgctctcacttataagtgagaacatgtggtatttggttttct----------ttttttttttttttgagacggagtttcactcttgttgcccaggctggagtacaatggcgccatctcggctcactgcaacctccacctcccaggttcaaacaattctcctgcctcagcctcccgagtagttgggactacaggcatgcgccaccacgcctggctaattttgtatttttagtagagacagggtttctgcatgttggtcaggctggtctcgaacacccgacctcaggtgatccacctgcctcagcctaccaaagtgttgggatgacaggcatgagccaccacatctggccagtatttggttttctgtttctgtgttaacttgcttaggataatggcctccagctgcatccatgttgctgcaaaggacataatcttgtgatttttcaaggctgtatagcattctgtgctgtatacataccacattgtctttatccagtccacctctgatgggacctgggtggattccatgtctttgctattgtgaatcctgctgcaatgaacacacaagtacatgtgtctttttggtagaatgatttattttcctttggatatacacccagtgatgggattgctgggctgaatggttactctgtttgtagttctctgaaacatctccaaaccaaactgctttccacagtggctgaactaatttacac--ccaccaacagtgtataagtgtcccctttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103276543 871 - 106955855 tctttttagattcagcagatacatgcgcaggttttt-tatatgagtatattgcatgatgctgaggcttgcattaatgatccagcc--------------------accaaataggtagattttcaagccttgctcccctccttacccaatggttagcgctctcacttataagtgagaacatgtggtatttggttttcttttttc----ttttttttttttttgagaccgagtttcactcttgttgcccaggctggagtataatggcgccatctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccaagtagttgggactacaggcatgcaccaccacgcccgggtaattttgtatttttagtagagacagggtttcggcatgttggtcaggctggtctcgaactcccgacctcaggtgatccgcctgcctcagcctcccaaagtgctgggatgacaggcatgagccaccgcgtctggccagtatttggttttctgtttctgtgttaactcgcttaggataatggcctctagctgcatccatgttgctgcaaaggacatgatcttgtgatttttcaaggctgtatagcattccatggtgtatacataccacactgtccttatccaatccacctctgatgggacctgggtggattccatgtctttgctatcgtggatcctgccgcaatgaacatacaagtgcgtgtgtctttttggtagaatgacttactttcctttggatatatacccagtaatgggattgctggactgaatggtaactctgtttgtagttctctgaaatatctccaaaca-----gctttctacagtggctgaactaatttacactcccaccaacagtgtataagtgtcccctttg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60562349 874 +  64156825 tctttttagattcagcagatacatgtgcagtttttt---aatgagtatattgcatgatgttgaggcttgcactaatgatccagtcacccaagtagtgagcatattaccaaataggtaaattttcaagccttgctcccctccttacccaatgttta--gctctcacttataagtgagaacatgtggtatgtgg-----------------ttttttttttctttagatggagtttcactcttgttgcccgggttggagtgcaatggcgccatctcggctcaccgcaacctccatctcccagattcaagaaattctcctacctcagcctcctgagtagctgtgattacaggaatgtgccaccacgcccagctaattttgtatttttagtagagacagggtttccacatgttagtcaggctggtctcaagctcccgacctcaggcaatccacctgtctcagcctcccaaagtactggaatgacaggcgtgagccaccgtgtctggccagtatttggttttctgtttctgtgttaactcatttaggataacggcctccagctgcattcatgttgctgcaaaggacataaccttgtgatttttcaaggccctatagcattctgcggtgtatacataacgcattgtctttatccaatccacctctgatgggcactgagttgatgccatgtctttcctattgtgaatcctgctgcaacaaacatacaagtgcatatgtctttttggtagaatgatttattttcctttggatatatacccagtaatgggatggctgggctgaatggtaactctgtttatagtgctctgaaacatctcctaact-----gctttccacagtggctgaactaatttacacgcccaccaacagtgtatcagtgtcccctttg
i rheMac3.chr19             C 0 I 2749
s macFas5.chr19              55687952 875 +  59248254 tctttttagattcagcagatacatgtgcagtttttt---aatgagtatattgcatgatgttgaggcttgcactaatgatccagtcacccaagtagtgagcatattaccaaataggtaaattttcaagccttgctcccctccttacccaatgttta--gctctcacttataagtgagaacatgtggtatgtgg----------------tttttttttttctttagatggagtttcactcttgttgcccgggttggagtgcaatggcgccatctcggctcaccgcaacctccatctcccagattcaagaaattctcctacctcagcctcctgagtagctgtgattacaggaatgtgccaccacgcccagctaattttgtatttttagtagagacagggtttccacatgttagtcaggctggtctcaagctcccgacctcaggcaatccacctgcctcagcctcccaaagtactggaatgacaggcgtgagccaccgtgtctggccagtatttggttttctgtttctgtgttaactcatttaggataacggcctccagctgcattcatgttgctgcaaaggacataaccttgtgatttttcaaggccctatagcattctgcggtgtatacataacgcattgtctttatccaatccacctctgatgggcactgagttgatgccatgtctttcctattgtgaatcctgctgcaacaaacatacaagtgcatatgtctttttggtagaatgatttattttcctttggatatatacccagtaatgggatggctgggctgaatggtaactctgtttatagtgctctgaaacatctcttaact-----gctttccacagtggctgaactaatttacacgcccaccaacagtgtatcagtgtcccctttg
i macFas5.chr19             C 0 I 2795
s papAnu2.chr19              47801571 874 +  51301725 tctttttagattCAGCAGATACATGTGCAGTTTTTT---AATGAGTATATTGCAGGATGTTGAGGCTTGCACTAATGATccagtcacccaagtagtgagcatatTACCAAATAGGTAAATTTTCAAGCCTTGCTCCTCTCcttacccaatgttta--gctctcacttataagtgagaacatgtggtatgtgg-----------------ttttttatttctttagatggagtttcactcttgttgcccgggttggagtgcaatggcgccatctcggctcaccgcaacctccacctcccagattcaagaaattctcctacctcagcctcctgagtagctgtgattacaggaatgtgccaccacgcccagctaattttgtatttttagtagagacagggtttccacatgttagtcaggctggtctcaagctcccgacctcaggcaatccacctgcctcagcctcccaaagtactagaatgacaggcgtgagccaccgtgtctggccagtatttggttttctgtttctgtgttaactcatttaggataatggcctccagctgcatccatgttgctgcaacgGACATAACCTTGTGATTTTTCAAGGCCGTATAGCATTCTGCGGTGTATACATAACGCATtgtctttatccaatccacctcTGATGGGCACTGAGTTGATgccatgtctttcctattgtgaatcctgctgcaacaaacatacaagtgcatatgtctttttggtagaatgatttattttcctttggatatatacccagtaatgggatggctgggctgAATGGTAACTCTGTTTATAGTGCTCTGAAACATCTCctaact-----gctttccacagtggctgaactaatttacacgcCCACCAACAGTATATCAGTGTCCCctttg
i papAnu2.chr19             C 0 I 2476
s chlSab2.chr6               47518430 870 +  50890351 tctttttagattcagcagatccatgtgcagtttttt---aatgagtatgttgcatgatgttgaggcttgcactagtgatccagccacccaagcagtgagcatattaccaaataggtaaattttcaagcctcgctcccctccttacccaacgttta--gctctcacttataagtgagaacatgtgg-atgtgg--------------------ttttcttttttagatagagtttcactcttgttgcccgggttggagtgcaatggcgccatctcggctcactgcaacctccacctcccagattcaagacattctcctacctcagcctcctgagtagctgtgattacaggaatgcgccaccacgcccagctaattttgtatttttagtagagacagggtttccacatgttagtcaggctggtctcaagctcccgacctcaggcaatccacctgcctcagcctcccaaagtactggaatgacaggcgtgagccactgtgtctggccagtatttggttttctgtttctgtgttaactcatttaggataatggcctccagctgcatccatgttgctgcaaaggacataaccttgtgatttttcaaggccgtatagctttctgtggtgtatacataacgcattgtctttatccaatccacctctgatgggcaccgagttgattccatgtctttcctattgtgactcctgctgtaacaagcatacaagtgcatatgtctttttggtagaatgatttattttcttttggatatatacccagtaatgggatggctgggctgaacggtaactctgtttatagtgctctgaaacatctcttaact-----gctttccacagtggctgaactaatttacacgcccaccaacagtgtatcagtgtcccctttg
i chlSab2.chr6              C 0 I 2237
e canFam3.chr1               19988006 156 - 122678785 I
e calJac3.chr22              45773030 96928 +  49145316 I

a score=226994.000000
s hg38.chr19_GL949751v2_alt    823581 447 +   1002683 ctccacaatctcaccagcatctgttaatttctggcttttcagtaatggccattctgactggtgtgagatggtattgttgagggataatttaggaatcagagagaccgaggggttgaggaggatttattattattattattatttaggtgcaccggccccagtcagattaacatccaaaaagactgaggctcgaacagagagtccggttaccttttaagcattttgtggggttgggggagatctgtgcagggggaagcatattacagaagcaagaaacaaaggcagttattcaattgagacatgcatcacattattccttacttttcaa-gaaaaatatgttttacgacttgaggttatcctgtctagtgatcttgcagccgcacggcaagagaaacagggtcttcacaatgcctgggaaagggagagataaggctcactagccacaga
s panTro4.chr19              59826689 447 +  63644993 ctccacaatctcaccagcatctgttaatttctggcttttcagtaatagccattctgactggtgtgagatggtattgttgcgggataatttaggaatcagagagaccgaggggttgaggaggatttcttcttattattattatttaggtgcaccggccccagtcggattaacatccaaaaagactgaggctcgaacagagagtccggttaccttttaagcattttgtggggtggggggagatctgtgcagggggaagcatattacagaagcgagaaacaaagacagttattcaattgagacatgcatcacattattccttacttttcaa-gaaaaatatgttttacgacttgaggttatcctgtctggtgaccttgcagctgcacggcaagagaaacagggtcttcacaatgcctgggaaagggagagataaggctcactagccacaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56739924 443 +  60714840 ctccacaatctcgccagcatctgttaatttctgacttttcactaatagccattctgactggtgtgagatggtatTtttgcaggataatttaggaatcagagagaccgaggggttgaggaggat---ttattattattattatttaggtgcaccgg-cccagtcagattaacatccaaaaag-ctgaggcccaaacaaagagtccggttaccttttaagcattttgtggggccgggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttattcaattgagacatgcattacattatttcttacttttcaaggaaaaacatgttttacgacttgaggttatcctgtctagtgaccttacagctgcacagcaagagaaacagggtgttcacaatgcctggaaaagggagagataaggctcactagccacaga
i ponAbe2.chr19             C 0 M 475
s nomLeu3.chr10             103277414 444 - 106955855 ctccacaatctcgccagcatctgttaatttctgacttttcagtaatagccattctgactggtgtgagatggtattgttgcgggatagtttaggaatcagagagaccgaggggttgaggaggat---ttattattattattatttaggtgcaccgg-cccagtcagattaacatccaaaaagactgaggcccgaacaaagagtccagttaccttttaagcattttgtcgggcggagggagatctgtgcaagtggaagcatattacagaagcgagaaacaaagatagttattcagttgacacatgcattacattatttcttacttttcaaggaaaaacatgttttacgacttgaggttatcctgtctagtgatcttgcagctgcacagctagagaaacagggtcttcgcaatgcctgggaaagggagagataaggctcactagccacaga
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19988006 156 - 122678785 I
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47519300 2237 +  50890351 I
e papAnu2.chr19              47802445 2476 +  51301725 I
e macFas5.chr19              55688827 2795 +  59248254 I
e rheMac3.chr19              60563223 2749 +  64156825 I

a score=24847.000000
s hg38.chr19_GL949751v2_alt    824028 98 +   1002683 cagaaaaacaggcagttcatgtttaaaggactccacctctttctcttcctcggggggaactgggttttcttaaatacaactgagtttttgtttacaca
s panTro4.chr19              59827136 98 +  63644993 cagaaaaacaggcagtgcatgtttaaaggactctacctctttctcttcctccgggggaactgggttttcttacatacaactgagtttttgtttacaca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103277858 98 - 106955855 cagacaaacaggcagttcatttttaaaggactccacctctttctcttcctcagggggaattgggttttcttacatacaactgagtttttgttcacaca
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19988006 156 - 122678785 I
e ponAbe2.chr19              56740367 475 +  60714840 M
e calJac3.chr22              45773030 96928 +  49145316 I
e chlSab2.chr6               47519300 2237 +  50890351 I
e papAnu2.chr19              47802445 2476 +  51301725 I
e macFas5.chr19              55688827 2795 +  59248254 I
e rheMac3.chr19              60563223 2749 +  64156825 I

a score=250576.000000
s hg38.chr19_GL949751v2_alt    824126 146 +   1002683 ttctgtaatttcttttaattcctgttccagtatctcactgtgAAACTCCCTATGTTTTTATACGATTCTCAGGGGGTTTCCTC-TGGGCATGATTGGGCACAACTTCCCACAGTCAGCTCTGGGTACGACCTCCACATTGCAGAATT
s panTro4.chr19              59827234 146 +  63644993 ttctgtaatttcttttaattcctgttccagtttctcactgtgAAACTCCCTATGTTTTTATACGATTCTCAGGGGGTTTCCTC-TGGGCATGATTGGGCACAACTTCCCACAGTCAGCTCTGGGTACGACATCCACATTGCAGAATT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103277956 146 - 106955855 ttctttaatttcttttaattcctgttccagtatctcactgtgAAACTCCCTATGTTTTTATACGATTCTCAGGGGGTTTCCTC-TGGGCATGATTGGGCACGACTTCCCACAGTCAGCTCCAGGCACGACCTCCACATTGCAGAATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60565972 146 +  64156825 TTCTTTAATTTCTTTTCATTCCTGTTCCAGTATCTCACTGTGAAATTCCCTGTGTTTTTATACGATTCTCGGGGGGTTTCCTC-TGAGCGTCATTAGGCCTGACTTCTCACCGTCAGCTCTGGGTACCACCTTCACATTGCAGAATT
i rheMac3.chr19             I 2749 C 0
s macFas5.chr19              55691622 146 +  59248254 ttctttaatttcttttcattcctgttccaGTATCTCACTGTGAAATTCCCTGTGTTTTTATACGATTCTCGGGGGGTTTCCTC-TGAGCGTCATTAGGCCTGACTTCTCACCGTCAGCTCTGGGTACCACCTTCACATTGCAGAATT
i macFas5.chr19             I 2795 C 0
s papAnu2.chr19              47804921 147 +  51301725 ttctttaatttcttttcattcctgttcCAGTATCTCACTGTGAAATTCCCTGTGTTTTTATACGATTCTCAGGGGGTTTCCTCTTTTGCGTCATTAGGCCTGACTTCTCACGGTCAGCTCTGGGTACCACCTTCACATTGCAGAATT
i papAnu2.chr19             I 2476 C 0
s chlSab2.chr6               47521537 146 +  50890351 ttctttaatttcttttcattcctgttccaGTATCTCACTGTGAAATTCCCTGTGTTTTTATATGATTCTCAGGGGGTTTCCTC-TGAGCGTCATTAGGCCTGACTTCTCACGGTCAGCTCTGGGTACCACCTTCACATTGCAGAATT
i chlSab2.chr6              I 2237 C 0
e canFam3.chr1               19988006 156 - 122678785 I
e ponAbe2.chr19              56740367 475 +  60714840 M
e calJac3.chr22              45773030 96928 +  49145316 I

a score=2800.000000
s hg38.chr19_GL949751v2_alt    824272 1 +   1002683 G
s panTro4.chr19              59827380 1 +  63644993 G
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103278102 1 - 106955855 G
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60566118 1 +  64156825 G
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55691768 1 +  59248254 G
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47805068 1 +  51301725 G
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47521683 1 +  50890351 G
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45869958 1 +  49145316 G
i calJac3.chr22             I 96928 C 0
e canFam3.chr1               19988006 156 - 122678785 I
e ponAbe2.chr19              56740367 475 +  60714840 M

a score=246493.000000
s hg38.chr19_GL949751v2_alt    824273  93 +   1002683 AGAAGTTGACCCAGAAATGCATTTTGGGCTGAGCAGACAATTGTCAGAGTTGCTGGCTAGACCA----------CAGATGTGTCAGAGGGACCACGGCCTTTC
s panTro4.chr19              59827381  93 +  63644993 AGAAGTTGACCCAGAAATGCATTTTGGGCTGAGCAGACAATTGTCAGAGTTGCTGGCTAGACCA----------CAGATGTGTCAGAGGGGCCGTGGCCTTTC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103278103  93 - 106955855 AGAAGTTGACCCAGAAATGCATTTCGGGCTGAGCAGACAATTGTCAGAGGAGCTGGCTAGGCCA----------CAGCTGTGTCAGAGGGCCTGTGGCCTTTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60566119  93 +  64156825 AGAAGCTGACCCAGAAATGCATTTCAGGCTGAGCAGACAAGTGTCAGGGGAGCTGGCTAGACCG----------CGGATGTGTCAGAGGGACCATGGCCTCTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55691769  93 +  59248254 AGAAGCTGACCCAGAAATGCATTTCAGGCTGAGCAGACAAGTGTCAGAGGAGCTGGCTAGACCG----------CGGATGTGTCAGAGGGACCATGGCCTTTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47805069  93 +  51301725 AGAAGCTGACCCAGAAATGCATTTCAGGCTGAGCAGACAAGTGTCAGAGGAGCTGGCTAGACCG----------CAGATGTGTCAGAGGGACCATGGCCTTTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47521684  93 +  50890351 AGAAGCTGACCCACAAATGCATTTCGGGCTGAGCAGACAAGTGTCAGAGGAGCTGGCTAGACCG----------CAGACGTGTCAGAGGGACCATGGCCTTTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45869959  93 +  49145316 AGAAGTTGACCCAGAAATGTATTTCAGGCTGAGCAGAAAGTGGTCAGGGGAGCTGGCTAGACCA----------CAGCTGTGTCATAGAGACCATGGCCTTTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19988162 103 - 122678785 AGAAGTGAACCCTGAGATGAGTCTCAGGTGAGGCAGACAATTGTCAGAGGATCTGGTTAGACCACAGAGATGATCAGATATGTCATAGGGACCATGATTTGTC
i canFam3.chr1              I 156 C 0
e ponAbe2.chr19              56740367 475 +  60714840 M

a score=2648712.000000
s hg38.chr19_GL949751v2_alt    824366 804 +   1002683 TGTAAGCTCATGGTCAGA-GGCGGA-GGGGAGTTGTGAACGTTCTGATGAAAGCAGTCAACGTGAAAGCGCTCTGGTGATGGGCGCTGGTG---CTCACCC-ACCACTTCCTGTGTATCTATCTCC----CTGGCCCGCCCGGCTCAGTCCCCA-----CTGCTCAGCACTAGGCCGGCAGAATCTGAGCGATGTCTTCCACACTCCCTGCCCTGCTCTGCGTCGGTGAGTTCTGGCGTGGAAGGGGAATGGGATCACGGTGTGCCTGGGAG-------GCAACAGGTCTCATTACTCCCGTCTTCCAGGGCTGTGTCTGAGTCAGAGGATCAGCGCCCAGCAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTCCGGGTTCAGGCCAAGCTCCT-TCCACCCAAGCACGGCTGGGGAGA-GGGGACA-GGGTGCTGGCTTCCCAGGAGAGCTTGGGGCCAGCAGCTGGGTGGAGCCTAAGGTTGGGGGGAGGGGGCTCCGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGTTCATCTGGGCCGAGCCCCATTTCATGGTTCCAAAGGAAAAGCAAGTGACCATCTGTTGCCAGGGAAATTATGGGGCTGTTGAATACCAGCTGCACTTTGAAGGAAGCCTTTTTGCCGTGGACAGACCAAAACCCCCTGAGCGGATTAACAAAGTCAAATTCTACATCCCGGACATGAACTCCCGCATGGCAGGGCAATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCCCAGCAACTTGCTGGATCTGGTGGTAACAGG----TAACTGT
s panTro4.chr19              59827474 800 +  63644993 TGTAAGCTCATGGTCAGA-GGCGGA-GGGGAGTTGTGAACGTTCTGATGAAAGCAGTCAACGTGAAAGCGCTCTGGTGATGGGCGCTGGTG---CTCACCC-ACCACTTCCTGTGTATGT----CC----CTGGCCCGCTGGGCTCAGTCCCCA-----CTGCTCAGCACTAGGCCGGCAGAATCTGAGCGATGTCTTCCACACTCCCTGCCCTGCTCTGCGTCGGTGAGTTCTGGCGTGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACAGGTCTCATTACTCCCGTCTTCCAGGGCTGTGTCTGAGCCAGAGGATCAGCGCCCAGCAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACCCTTCCTGGTTCAGGCCAAGCTCCT-TCCACCCAAGCACGGCTGGGGAGA-GGGGACA-GGGTGCTGGCTTCCCAGGAGAGCTTGGGGCCAGCAGCTGGGGGGAGCCTAAGGTTGGGGGGAGGGGGCTCCGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGTTCATCTGGGCCGAGCCCCATTTCATGGTTCCAAAGGAAAAGCAAGCGACCATCTGTTGCCAGGGAAATTATGGGGCTGTTGAATACCAGCTGCACTTTGAAGGAAGCCTTTTTGCCGTGGACAGACCAAAAGCCCCTGAGCGGATTAACAAAGTCAAATTCTACATCCCGGACATGAACTCCCGCATGGCAGGGCAATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCCCAGCAACTTGCTGGATCTGGTGGTAACAGG----TAACTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56740843 800 +  60714840 TGTAAGCTCATGGTCAGAGGGCGGA-GGGGTGTTGTGAGCGTTCTGATGAAAACAGTCAACATGAAAGCGC-CTGGTGATGGGCGCTGGTG---CTCACCC-ACCACTTCCTGTGCATCT----CC----CTGGCCTGCTGGGCTCAGTCCCCA-----CTGCTCAGCACTAGGCCGGCAGAATCTGAGCGATGTCTTCCACACTCCCTGCCCTGCTCTGCGTCGGTGAGTTCTTGAATGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACAGGTCTCATTACTCCCGTCTTCCAGGGCTGTGTCTGAGCCAGAGGATCAGCACCCAGCAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTTGGGGTTCAGGCCAAGCTCCC-TCTACCCAAGCACAGCTGGGGAGA-GGGGGCA-GGATGCTGGCTTCCCAGGAGAGCTTGGGGCCAGCAGCTGGGTGGAGCCTAGGGTTGGGGGGAGAGGGCTCAGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGTTCATCTGGGCCGAGCCCCATTTCATGGTTCCAAAGGAAAAGCAAGCGACCATCTGTTGCCAGGGAAATTATGGGGCTGTTGAATACCAGCTGCATTTTGAAGGAGGCCTTTTTGCCGTGGAGAGACCAAAACCCGCTGAACGGATTAACAAAGTCAAATTCTACATCCCGGACATGAACTCCCGCACAGCAGGGCAATACAGCTGCATCTATAGGGTTGGGGAGCTCTGGTCAGAGCCCAGCAACGTGCTGGATGTGGTGGTAACAGG----TAACTGT
i ponAbe2.chr19             M 475 C 0
s nomLeu3.chr10             103278196 805 - 106955855 TGTAAGCTCATGGTCAGA-GGCGGA-GGGGAGTTGTGAACGTTCTGATGAAAAAAGTCAACATGAAAGCGCTTTGGTGATGGGCGCTGGTG---TTCATCCAACCACTTCCTGTGCATCT----CCCCGTCCGTCCAGCTGGGCTCAGTCCCCA-----CTGCTCAGCACTAGGCCGGCAGAATCTGAGCAATGTCTTCCACACTCCCTGCCCTGCTCTGCGTCGGTGAGTTCTTGCATGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACAGGTCTCATTATTCCCGTCTTCCAGGGCTGTGTCTGAGCCAGAGAATCAGCGCCCAGCAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTCCGGGTTCAGGCCAAGCTCCC-TCCACCCAAGCACGGCTGGGGAGA-GGGGGCA-GGGTGCTGGCTTCCCAGGAGGGCTTGGGGCCAGCAGCTGGGTGGAGCCTAGGATTCCGGGGAGGGGGCTCAGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGTTCATCTGGGCCGAGCCCCATTTCATGGTTCCAAAGGAAAAGCAAGTGACTATCTGCTGCCAGGGAAATTATGGGGCTGTTGAATACCAGCTGCATTTTGAAGGAAGCCTTTTTGCCGTGGAGAGACCAAAACCCCCTGAACGGATTAACAAAGTCAAATTCTACATCCTGGCCATGAACTCCCGCACGGCAGGGCAATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCCCAGCAACTGGCTGGATCTGGTGGTAACAGG----TAACTGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60566212 807 +  64156825 CGTAGGCTCATGGTCAGA-GGTGGAGGGGGAGTGGTGAACGTTCTAATGAAAAAAGTCAACATGAAAGCTTCCTGGCGATGGGCGCTGGGG---CTCAGCC-ACCACTTCCTGTGCATCT----CC----CTGGCCCGCTGGGCTCAGTCCCCACCCCGCTGCTCAGCACTCGGCCGGTAGAATCTGAGCGATGTCTTCCACGCTCCGTGCCCTGCTCTGCCTTGGTGAGTTCCTGCATGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACGGGTCTCATTATTCCCGTCTTCCAGGGCTGTGTCTGAGCCAGAGAATCAGCGCCCCAAAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTTCGGGTTCAGGCCAAGCACCC-TCCACCCAAGCACGGCTGGGGAGAGGGGGGCG-GGGTGCTGGCTTCCCAGGAGGGCCTGGGGCCAGCAGCAGGGTGGAGCCTATGGTTGGGGGGACGGGGCTCAGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGATCATCAGGGCTGAATCCACTTACATGGTTCCGAAGGAAAAGCAAGCGACCCTCTGTTGCCAGGGAAGTTATGGAGCTGTTGAATACCAGCTGCATTTTGAAGGAAGCCTTTTTGCCGTGGAGAGACCAAAACCGCCTGAACGGATTAATGGAGTCAAATTCCACATCCCGGACATGAACTCCCGCAAGGCAGGGCGATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCGCAGCGACTTGCTGGATCTGGTGGTAACAGG----TAACTGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55691862 807 +  59248254 CGTAGGCTCATGGTCAGA-GGTGGAGGGGGAGTGGTGAACGTTCTAATGAAAAAAGTCAACATGAAAGCTTCCTGGCGATGGGCGCTGGGG---CTCAGCC-ACCACTTCCTGTGCATCT----CC----CTGGCCCGCTGGGCTCAGTCCCCACCCCGCTGCTCAGCACTCGGCCGGTAGAATCTGAGCGATGCCTTCCACGCTCCATGCCCTGCTCTGCCTTGGTGAGTTCCTGCATGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACGGGTCTCATTATTCCCGTCTTCCAGGGCTGTGTCTGAGCCAGAGAATCAGCGCCCCAAAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTTCGGGTTCAGGCCAAGCACCC-TCCACCCAAGCACGGCTGGGGAGAGGGGGGCG-GGGTGCTGGCTTCCCAGGAGGGCCTGGGGCCAGCAGCAGGGTGGAGCCTATGGTTGGGGGGATGGGGCTCAGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGATCATCAGGGCTGAATCCACTTACATGGTTCCGAAGGAAAAGCAAGCGACCCTCTGTTGCCAGGGAAGTTATGGAGCTGTTGAATACCAGCTGCATTTTGAAGGAAGCCTTTTTGCCGTGGAGAGACCAAAACCGCCTGAACGGATTAATGGAGTCAAATTCCACATCCCGGACATGAACTCCCGCAAGGCAGGGCGATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCGCAGCGACTTGCTGGATCTGGTGGTAACAGG----TAACTGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47805162 806 +  51301725 CGTAGGCTCATGGTCAGA-GGTGGAGGGGGAGTGGTGAACGTTCTAATGAAAAAAGTCAACATGAAAGCTTCCTGGCGATGGGCGCTGGGG---CTCACCC-ACCACTTCCTGTGCATCT----CC----CTGGCCCGCTGGGCTCAGTCCCCACCCCGCTGCTCAGCACTCGGCCGGTAGAATCTGAGCGATGCCTTCCACGCTCCGTGCCCTGCTCTGCCTCGGTGAGTTCCTGCATGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACGGGTCTCATTATTCCCGTCTTCCAGGGCTGTGTCTGAGCCAGAGAATCAGCGCCCCGAAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTTCGGGTTCAGGCCAAGCACCG-TCCACCCAAGCACAGCTGGGGAGA-GGGGGCG-GGGTGCTGGCTCCCCAGGAGGGCCTGGGGCCAGCAGCAGGGTGGAGCCTACGGTTGGGGGGACGGGGCTCAGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCCATCATCAGGGCCGAATCCACTTACATGGTTCCGAAGGAAAAGCAAGCGACCCTCTGTTGCCAGGGAAGTTATGGAGCTGTTGAATACCAGCTGCATTTTGAAGGAAGCCTTTTTGCCGTGGAGAGACCAAAACCGCCTGAACGGATTAATGGAGTCAAATTCCACATCCCGGACATGAACTCCCGCAAGGCAGGGCAATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCGCAGCGACTTGCTGGATCTGGTGGTAACAGG----TAACTGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47521777 810 +  50890351 CGTAGGCTCATGGTCAGA-GGTGGAGGGGGAGTGGTGAACGTTCTAATGAAAAAAGTCAACATGAAAGCTTCCTGGTGATGGGCGCTGGGG---CTCACCC-ACCACTTCCTGTGCATCT----CC----CTGGCCCGCTGGGCTCAGTCCCCACCCCGCTGCTCAGCACTCGGCCGGTAGAATCTGAGCGATGCCTTCCACGCTCTGTGCCCTGCTCTGCCTCGGTGAGTTCTTGCATGGAAGGGGAATGGGATCAGGGTGTGCCTGGGAG-------GCAACAGGTCTCATTATTCCCGTCTTCCAGGGCTGTGTTTGAGCCAGAGAATCAGCACCCCGAAGCGTGAGTCCTTCCTTCAAAGCC-CAGGGTCACTCTTTCGGGTTCAGGCCAAGCACCC-TCCACCCAAGCACGGCTGGGGAGA-GGGGGCG-GGGTGCTGGCTTTCCAGGAAGGCCTGGGGCCAGCAGCAGGGTGGAGCCTACGGTTGGGGGGACGGGGCTCAGCTGGAACTCCAGCCTCTGATTCCCTTCCAGAGACTCTCCCAAAACCGATCATCAGGGCCGAATCCACTTACATGGTTCCAAAGGAAAAGCAAGCAACCCTCTGTTGCCAGGGAAGTTATGGAGCTGTTGAATACCAGCTGCATTTTGAAGGAAGCCTTTTTGCCGTGGAGAGGCCAAAACCGCCTGAACGGATTAATGGAGTCAAATTCCACATCCCGGACATGAACTCCCGCAAGGCAGGGCGATACAGCTGCATCTATCGGGTTGGGGAGCTCTGGTCAGAGCGCAGCGACTTGCTGGATCTGGTGGTAACAGGTAACTAACTGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45870052 789 +  49145316 TGTAGGCTCACGGTCAGA-GGTGGA-GGGGAATTGTGAA-GTTCTTATGAAAAAAGTCAACGTGAAAGCCACATGGTAATGAGGGTTGGC----CTCATCT-ACCACTTCCTCTGCATCT----CC----CTGGCACACTGGGCTCAGTCACTACCCCACT------------GCCAGCAGAATCTGAGCGATGCCTTCCACACTCCCTGCCCTGCTCTGCCTCGGTGAGTTCTTGCCCGGATGGGGAATGGAATCAGGGTGTGCCTGGGAA-------GCAATAGGTCTCATTATTCCCATCTTGCAGGGCTGTGTCTGAGCCAGAGGATCAGCACCCAGCAGCGTGAGTCCTTCCTTCAAAGCT-TAGGGTCACTCTTACGGGTTCAGGCCAAGCACCC-TCCACCCAAATACAACTGGGAAGA-GGGGACA-GGGTGCGGGCTTCCCAGGAGGACTTAGGGCCAGCAGCTGGGTGGAGCCTAGGGT--GGGAAGGTGGGCTCAGCTGGGACTCCAGCATCTGATTCCCTTCCAGAGACTCTCCCAAAACCCTCCATCTGGGCCAAGCCCAGTTTCATGGTTCCAAAGGAAAAGCCGGCGACCATCTCTTGCCAGGGAAATTATGGGGCTGTTGAATACCAGCTGCATTTTGAAGGAAGTCTTTCTGCCGTGGAGAGACCAAAACCCCCTGAGCGCATTAACAAAGTAGAGTTTCACATCCCGGCCATGACGTCCCGCACGGCCGGGCGATACAGCTGCTTCTATCGGGTTGGGGAGCTCTGGTCAGAACCTAGCGACTCACTGGATCTGGTGGTAACAGG----TAAGTGT
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19988265 793 - 122678785 -------TCATGGTCAAA--GTACAGGGAAGACTGTGAGCCTTCTTAT--AAAAAGTCAGTGTGAAAGCCCCATGTCAAATAGTGTTGTTGGGCTTCACCC-ACCACATCCTGTGCA-CT----TA----CTGGCCTGCTGGGCTCAGTCTCCACTCAGCTCCTCCATATGTGCCTGGTATAATCAGTGCTATGACCTCTACACTCACTGCCCTTCTCTTCCTTGGTGAGTTCTTGCACACAGGGGAAACAGAATTCGGGAGT--CTGGGTGTGGGTGAGCGGCATGTCTCATTGTTCCTGTCTTCCAGGGCTGTACCTGAGCCAGACCACCAGCACCCAGAAGCGTGAGTCCCTTCTTCAGAGCCTCAGAATCTCTCTTCTGGGCTCAGATGCAGTATCTATCTATGAAACCAAAG-------GA-GGGGGCAGGGGCTCTGGTTTGCTAGGAGGGCTTGAGGCCAACA---GGGTAGAAATTTGCGT---GGGAAGGGACTTTATCTGGAACTCCAGCCTCTGATTCTCTTCCAGAGATTCTTTCAAAACCCATCATCTGGGTCAAGCCAAATTTCATGATTCCAAAGGGAATGCCAGTGTTGATCTGGTGCCAGGGGACTCCTGAGGCCATTGAATATCAGCTGCATCTTGAAGGACATCTCTATGCCCAGCAGAGCCCAAAACAACTTGAAAGGAGGAACACAGTCATGTTCCGCATCCCAAAAATGACCCTGCTCACTGCAGGGCAATACAGGTGCTTTTACCGAATCAAGGAGCTCTGGTCAAAGCCTAGTGACCCTCTGGATCTGGTGGTAACAGG----TAACTAT
i canFam3.chr1              C 0 I 83

a score=457445.000000
s hg38.chr19_GL949751v2_alt    825170 166 +   1002683 CCGGTTCTCTAACTGGAGAGTGATCTCAGTCTGCATCCGGGATGCAGCATCATCTATGAACTCTTCCAAGCCCCACTCAGACACTGCTTGTCTCGGTAGGAGGCTGGAAGGAGGGGTGATCCCCATCACAATCCTTGCCTACAAGGGGTTGTCTGCAGACCGTGTC
s panTro4.chr19              59828274 164 +  63644993 CCGGTTCTCTAACTGGAGAGTGATCTCAGTCTGCATCCGGGATGCAGCAGCATC--TGAACTCTTCCAAGCCCCACTCAGACACTGTTTGTCTCGGTAGGAGGCTGGAAGGAGGGGTGATCCCCATCACAATCCTTGCCTACAAGGGGTTGTCTGCAGACCGTGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56741643 163 +  60714840 CCGCTTCTCTAACTGGAGAGTGATCTCAGTCTGCATCCGGGATACAG---CATCTATGAACTCTTCCAAGCCCCACTCAAACGCTGCTTGTCTCGGTAGGAGGCTGGGAGGAGGGGTGATCCCCATCACAGTCCTTGCCTACAAGGGGTTGTCTGCAGACGGTGTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103279001 166 - 106955855 CCGGTTCTCTAACTGGAGAGTGATCTCCGTCTGCATCCGGGATGGAGCATCATCTATGAACTCTTCCAAGCCCCATTCAGACCCTGCTTGTCTCGGTAGGAGGCTGGGAGGAGGGGTGATCCCCATCACAATCCTTGCCTACAAGGGGTTGTCTGCAGACAGTGCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60567019 165 +  64156825 CCGGTTCTCTAACTGGAGAGTGAGCTCAGTCTGCATCCGGGATGGAGCATCATCTATAAACTCTTCCAAGCCCCACTCAGACACTGCTTGTCTCGGTAGGAGGTTGG-AGGAGGGGTGATCCCCATCACAATCTCAGCCTACAAGGCGTTGTCTGCAGACAGTGTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55692669 165 +  59248254 CCGGTTCTCTAACTGGAGAGTGAGCTCAGTCTGCATCCAGGATGGAGCATCATCTATAAACTCTTCCAAGCCCCACTCAGACACTGCTTGTCTCGGTAGGAGGTTGG-AGGAGGGGTGATCCCCATCACAATCTCAGCCTACAAGGCGTTGTCTGCAGACAGTGTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47805968 165 +  51301725 CCGGTTCTCTAACTGGAGAGTGAGCTCAGTCTGCATCCGGGATGGAGCATCATCTATAAACTCTTCCAAGCCCCACTCAGACACTGCTTGTCTCGGTAGGAGGTTGG-AGGAGGGGTGATCCGCATCACAATCTCAGCCTACAAGGCGTTGTCTGCAGACAGTGTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47522587 164 +  50890351 CCGGTTCTCTAACTGGAGAGTGAGCTCAGTCTGCATCTGGGATGGAGCATCACCTATGAACTCTTCCAAGCCCCACTCAGACACTGCTTGTCTCAGTAGGAGGTTGG-AGGAGGGGTGATCC-CATCACAATCTCAGCCTACAAGGCGTTGTCTGCAAACAGTGTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45870841 164 +  49145316 CCCGCTCCGTAACTGGAGAGTCAGCTCAGTCTACCGCCGGGATGGAGCCTCATCTATTAACTCTTCCAAGCCCCACTCAGACGCTGCTTCTCTCGGAAGGAGGTTGGGTGGACGGATG-TACTCATCAC-GTCCCTGCCTACAAGGGCTTGTCTGCAGACAGCGTC
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19989058  83 - 122678785 I

a score=146029.000000
s hg38.chr19_GL949751v2_alt    825336 42 +   1002683 TCTACGTCCTAGGAGCAGATGTGTCCTCAGTCAGTTTCTCCA
s panTro4.chr19              59828438 42 +  63644993 TCTACATCCTAGGAGCAGATGtgtcctcggtcagtttctcca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56741806 42 +  60714840 TCTACGTCCTAGGCGCAGATGTGTCCTCAGTCAGTTTCTCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103279167 42 - 106955855 TCTATGTCCTAGGAGCAGATGtgtcctcggtcagtttctcca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60567184 42 +  64156825 TCTATGTCCTATGAGCAGATGtgtcctcggtcaagttctcca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55692834 42 +  59248254 TCTATGTCCTATGAGCAGATGTGTCCTCGGTCAAGTTCTCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47806133 42 +  51301725 TCTATGTCCTACGAGCAGATGTGTCCTCGGTCAAGTTCTCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47522751 42 +  50890351 TCTGTGTCCTACGAGCAGATGTGTCCTCGGTCAAGTTCTCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45871005 42 +  49145316 TCTATGTCCTAGCAGCAGATGtgtcctcggtcaagttctcca
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19989141 42 - 122678785 TCTATGACCTAGAGGCAGATTTGTCATAGGTCAGGTTCTCCA
i canFam3.chr1              I 83 I 1526

a score=977276.000000
s hg38.chr19_GL949751v2_alt    825378 359 +   1002683 TGACACAGATTCTGAGATAGATATTTGTATGCAGGGGTATGACTGAGGAATGTCCTCAAAAACAATGCCTGTGGGCTAGGCGCAGTGGCTTACACTTTGCTTCCCTCACCCATCACAGGTGGT-GGGttt---------tttttttttttatctgttttgagacggagtttcgctcttgtcacccaggctggagtgcagtggtgcaatctccagtcactgcaacctccacctcctgggttcaagtgattctccagcctcagcttcccaagtagctgggatcacaggcacccaccactac-----gccacattttgtatttttagtagagatggggtttcaccatgttggccagggtggtgtcgaactcctgacc
s panTro4.chr19              59828480 359 +  63644993 agacacagattctgagatagatatttgtgtgcaggggtatgactgaggaatgtcctcaaaaacaatgcctgtggGCCAGGCGCAGTGGCTTACACTTTGCTTCCCTCACCCATCACAGGTGGT-GGGGtt---------tttttttttttatctgttttgagacggagtttcgctcttgtcacccaggctggagtgcagcggtgcaatctccagtcactgcaacctccacctcctgggttcaagtgattctccagcctcagcttcccaagtagctgggattacaggcacccaccactac-----gccagattttgtatttttagtagagatggggtttcaccatgttggccagggtggtctcgaactcctgacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56741848 338 +  60714840 AGACACAGATTCTGAGATAGATATTTGTGTGC-------------AGGAATGTCCTCAAAAACAACGCCTGTGGGCCAGGCGCAGTGGCTTACAC--TGCTTCCCTCACCCATCACAGGTGTT-GGAG---------------ttttttaatctgttttgagacggagtttcactcttgtcacccaggctggagtgcagtggtgcaatctccagtcactgcaacctccacctcctgggttcaagcgattctccagcctcagcttcccaagtagctgggattacaggcacccaccaccat-----gccagtttttgtatttttagtagagatggggtttcaccatgttgaccagggtggtctcaaactcctgacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103279209 353 - 106955855 agacatagattctgagatagatatttgggtgcaggggtataactgaggaatgtcctcaaaaacaacacctgtggGCCAGGCGCAGTGGCTTACACTTTGCTTCCCTCACCCATCACAGGTGGT-GGGG--------------ttttttttatctgttttgagatggagtttcgttcttgtcacccaggctggagtgcagtggtgcaatctccagtcact-caacctccacctcctgggttcaagcgattctccagcctcagcttcccaagtagctgggattacaggcacccaccaccat-----gccagtttttgtatttttagtagagatggggtttcaccatgttggccagggtggtctcgaactcctgacc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60567226 352 +  64156825 agacacagattctgagatagatatttgtgtgcaggggtatgactgaggaacgtcctcaaaaacaacgcctgtggGCCAGGCGCAGTGGCTAACACTTTGCTTCCCTCACCCATCACAGGTGGT-GGGG---------------tttttgtgtttgttttgaga-agagtttcactcttgtcacccaggttggagtgcaatggtgcagtctcccatcactgcaacctccacctcctgggttcaagtgattctccagcctcagcttcccaagtagctgggattacaggcgcccaccaccac-----gccaatttttgtatttttggtagagacagggtttcactatgttgaccagggtggtctcaaacttctgacc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55692876 352 +  59248254 AGACACAGATTCTGAGATAGATATTTGTGTGCAGGGGTATGACTGAGGAACGTCCTCAAAAACAACGCCTGTGGGCCAGGCGCAGTGGCTAACACTTTGCTTCCCTCACCCATCACAGGTGGT-GGGG---------------tttttgtgtttgttttgaga-agagtttcactcttgtcacccaggttggagtgcaatggtgcagtctcccatcactgcaacctccacctcctgggttcaagtgattctccagcctcagcttcccaagcagctgggattacaggcgcccaccaccac-----gccaatttttgtatttttggtagagacagggtttcactatgttgaccagggtggtctcaaactcctgacc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47806175 351 +  51301725 AGACACAGATTCTGAGATAGATATTTGTGTGCAGGGGTATGACTGAGGAATGTCCTCAAAAACAACGcctgt-ggccaggcgcagtggctaacacTTTGCTTCCCTCACCCATCACAGGTGGT-gggg---------------tttttgtgtttgttttgaga-agagtttcactcttgtcacccaggttggagtgcaatggtgcagtctcccatcactgcaacctccacctcctgggttcaagtgattctccagcctcagcttcccaagtagctgggattacaggcgaccaccaccac-----gccaatttttgtatttttggtagagacagggtttcactatgttgaccagggtggtctcaaactcctgacc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47522793 350 +  50890351 AGACACAGATTCTGAGATAGATATTTGTGTGCAGGGGTGTGACTGAGGAACGTCCTCAAA---AACGCCTGTGGGCCAGGCGCAGTGGCTGACACTTTGCTTCCCTCACCCATCACAGGTGGTGGGGG---------------tttttgtgtttgttttgaga-ggagtttcactcttgtcacccaggttggagtgcagtggtgcagtctcccgtcactgcaacctccacctcctgggttcaagtgattctccagcctcagcttcccaagtggctgggatgacaggcgcccaccaccac-----gccaatttttgtatttttggtagagacagggtttcactatgttgaccagggtggtctcaaactcctgacc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45871047 370 +  49145316 agaaacagattctgagatagatatttgtgtgcaggagggtgactgacaaatgtcctcaacagcatcgcctgtggGCCAGGCGCAGTGGCTTAGGCCTTGCTTTCCTCATCCATCACAGGTGAT-GGGTTTAAAAAAATATATTTTGGCtttttttttttcaga--cagtcttgctctgctc-cccaggctggagtgcagtggtgcaatctcagctcactgccacctctacctcctggattcaagcaattatcctgcctcggtctcccaagtagttgggactacaggcacctgccaccatgtctggctaatttttgcatttttagtagggatgggatttcaccatgtcagccaggctggtctcgaactcctgacc
i calJac3.chr22             C 0 I 487
e canFam3.chr1               19989183 1526 - 122678785 I

a score=201021.000000
s hg38.chr19_GL949751v2_alt    825737 92 +   1002683 tcagatgatccgcccgcctcaccctcccaaagtgctgggattacaggtgtgagccatcacacccagccAGGTGGTGGTTTTCTaaaaaa-----aaa
s panTro4.chr19              59828839 92 +  63644993 tcagatgatccgcctgcctcaccctcccaaagtgctgggattacaggtgtgagccatcgcgcctagccAGGTGGTGTTTTTCTAAAAAA-----AAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742186 92 +  60714840 tcagatgatccgcctgcctcaccctcccaaagtgctgggattacaggtgtgagccattgcgcccagccAGGTGGTGGTTTTCTAAAAAA-----AAA
i ponAbe2.chr19             C 0 I 4
s nomLeu3.chr10             103279562 87 - 106955855 tcagatgatccgcccgcctcaccctcccaaagtgctgggattacaggtgtgagccatcgcgcccagccAGGTGGTGTTTTTCTAAAA----------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60567578 94 +  64156825 tcaggtgatcctcccgcctcagcctcccaaagtgctgggattacaggtgtgagccatcgcgcctggccAGGTGGTGTTTTTCTAAAAAACAAAA---
i rheMac3.chr19             C 0 I 611
s macFas5.chr19              55693228 89 +  59248254 tcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccatcgcgcctggccAGGTGGTGTTTTTCTAAAAAA--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47806526 88 +  51301725 tcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagcc-tcacACCTGGCCAGGTGgtgtttttctaaaaaa--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47523143 89 +  50890351 tcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagtcatcgcgcctggccAGGTGGTGTTTTTCTAAAAAA--------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I

a score=546.000000
s hg38.chr19_GL949751v2_alt    825829 2 +   1002683 aa
s panTro4.chr19              59828931 2 +  63644993 AA
i panTro4.chr19             C 0 I 6
s nomLeu3.chr10             103279649 2 - 106955855 AA
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e ponAbe2.chr19              56742278 4 +  60714840 I
e calJac3.chr22              45871417 487 +  49145316 I
e chlSab2.chr6               47523232 0 +  50890351 C
e papAnu2.chr19              47806614 0 +  51301725 C
e macFas5.chr19              55693317 0 +  59248254 C
e rheMac3.chr19              60567672 611 +  64156825 I

a score=19961.000000
s hg38.chr19_GL949751v2_alt    825831 24 +   1002683 aaaaaaTTAGCTTTTTTTTTTTTT
s nomLeu3.chr10             103279651 24 - 106955855 AAAAATTTAGCttttttttttttt
i nomLeu3.chr10             C 0 I 116
s macFas5.chr19              55693317 24 +  59248254 CAAAATTTAGCttttttttttttt
i macFas5.chr19             C 0 I 502
s papAnu2.chr19              47806614 24 +  51301725 caaaatttagcttttttttttttt
i papAnu2.chr19             C 0 I 498
s chlSab2.chr6               47523232 24 +  50890351 CAAAATTTAGCttttttttttttt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e ponAbe2.chr19              56742278  4 +  60714840 I
e calJac3.chr22              45871417 487 +  49145316 I
e rheMac3.chr19              60567672 611 +  64156825 I
e panTro4.chr19              59828933  6 +  63644993 I

a score=91.000000
s hg38.chr19_GL949751v2_alt    825855 1 +   1002683 A
s chlSab2.chr6               47523256 1 +  50890351 a
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e ponAbe2.chr19              56742278 4 +  60714840 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e papAnu2.chr19              47806638 498 +  51301725 I
e macFas5.chr19              55693341 502 +  59248254 I
e rheMac3.chr19              60567672 611 +  64156825 I
e panTro4.chr19              59828933 6 +  63644993 I

a score=0.000000
s hg38.chr19_GL949751v2_alt    825856 1151 +   1002683 ACaatatggttgtttattattattatcaagtattatacatagttacatatacatacataattgtatgtgctatacaattaggtttgtttataccagcaacaccaaaaacacatgagcaatactttgtgctaggaaggctatgatgtcatcaggcaataggaatttttcagtttcattataatcttatgggaccaccatcatatatgtggtacattgttggccaaaatgtcattatgcagctcacaacAGtatttcatgtccattcaaatatcttcttttgtgaaatgtctatttaaatcttttgcctatttttaaattgggttgcttatattttgattgattaggaaaagttatttctatattctgtgtcatatacttgtgttgaaatatatatattttttgtctgtgccttttcatttgctcagggtctttggaccttgtttggaggttctggcaggggaacacagctactcatttattcttTTttttttaatttttttagtatttattgatcattcttgggtgtttctcggagagggggatttggcagggtcataggacaatagtggagagaaggtcagcagataaacatgtgaacaaaggtctctggctttcctaggcagaggtccctgcggccttccgcagtgtttgtgtccctgggtacttgagattagggagtggtgatgactcttaaggagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacatagcacatgtttcagagagcacggggttgggggtaaggtcatagattaacagcatcccaaggcagaagaatttgtcttagtacagaacaaaatggagtctcctatgtctacttctttctacacagacacagtaacaatctgatctctctttcttttccccacatttcccctttttctattcgacaaaaccgccatcgtcatcatggcccattctcaatgagctgttgggtacacctcccagacggggtggcggccgggcagaggggctcctcacttcccagacggggcggccgggcagaggcgcccccccacctcccagacggggcagtggccgggcgggggctgccccccaacctcccggacggggcggctgGCCGGG
e canFam3.chr1               19989183 1526 - 122678785 I
e ponAbe2.chr19              56742278    4 +  60714840 I
e calJac3.chr22              45871417  487 +  49145316 I
e nomLeu3.chr10             103279675  116 - 106955855 I
e chlSab2.chr6               47523257    0 +  50890351 C
e papAnu2.chr19              47806638  498 +  51301725 I
e macFas5.chr19              55693341  502 +  59248254 I
e rheMac3.chr19              60567672  611 +  64156825 I
e panTro4.chr19              59828933    6 +  63644993 I

a score=655.000000
s hg38.chr19_GL949751v2_alt    827007 7 +   1002683 GCttttt
s ponAbe2.chr19              56742282 7 +  60714840 GCttttt
i ponAbe2.chr19             I 4 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e chlSab2.chr6               47523257 0 +  50890351 C
e papAnu2.chr19              47806638 498 +  51301725 I
e macFas5.chr19              55693341 502 +  59248254 I
e rheMac3.chr19              60567672 611 +  64156825 I
e panTro4.chr19              59828933 6 +  63644993 I

a score=3332.000000
s hg38.chr19_GL949751v2_alt    827014 13 +   1002683 ttttttttttttg
s panTro4.chr19              59828939 13 +  63644993 ttttttttttctg
i panTro4.chr19             I 6 C 0
s ponAbe2.chr19              56742289 13 +  60714840 ttttttttttttg
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e chlSab2.chr6               47523257  0 +  50890351 C
e papAnu2.chr19              47806638 498 +  51301725 I
e macFas5.chr19              55693341 502 +  59248254 I
e rheMac3.chr19              60567672 611 +  64156825 I

a score=30025.000000
s hg38.chr19_GL949751v2_alt    827027 56 +   1002683 agacagtctcgctgcagtgcagtggtacaatctcagctcactgcaacctc--tgcctc
s panTro4.chr19              59828952 58 +  63644993 ggacagtctcgctgcagtgcagtggtgcaatctcagctcactgcaacctcactgcctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742302 56 +  60714840 agacagtctcgctgcagtgcagtggtgcaatctcagctcactgcaacctc--tgcctc
i ponAbe2.chr19             C 0 I 14
s chlSab2.chr6               47523257 56 +  50890351 agacagtctcgctgcagtgcagtggtacaatctcagctcactgcaacctc--tgcctc
i chlSab2.chr6              C 0 I 14
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e papAnu2.chr19              47806638 498 +  51301725 I
e macFas5.chr19              55693341 502 +  59248254 I
e rheMac3.chr19              60567672 611 +  64156825 I

a score=-172.000000
s hg38.chr19_GL949751v2_alt    827083  8 +   1002683 --agcctcaa----
s panTro4.chr19              59829010 14 +  63644993 ccaggttcaagcaa
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e ponAbe2.chr19              56742358 14 +  60714840 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e chlSab2.chr6               47523313 14 +  50890351 I
e papAnu2.chr19              47806638 498 +  51301725 I
e macFas5.chr19              55693341 502 +  59248254 I
e rheMac3.chr19              60567672 611 +  64156825 I

a score=64852.000000
s hg38.chr19_GL949751v2_alt    827091 124 +   1002683 ttctcctgcctcagcctcccaagtagttgagattacaggcatgtgccaccacacccggctaatttttgcatttttagtagagacggggtttcaccatgttgaccaggctggtctcaaactcctg
s panTro4.chr19              59829024 124 +  63644993 ttctcctgcctcagcctcccaagtagttgggattacaggcatgggccaccacacccggctaatttttgcatttttagtagagacggggtttcaccatgttgaccagtctggtctcaaactcctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742372 124 +  60714840 ttctcctgcctcagcctcccaagtagttgcaattacaggcatgggtcaccacacccggctaatttttgcatttttagtagagacagggtttcaccatgttgaccaggctggtctcaaactcctg
i ponAbe2.chr19             I 14 C 0
s chlSab2.chr6               47523327 124 +  50890351 ttctcctgcctcagcctcccaagcagttgggtttacaggcataggccaccacgcctggctaatttttgcatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctg
i chlSab2.chr6              I 14 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e papAnu2.chr19              47806638 498 +  51301725 I
e macFas5.chr19              55693341 502 +  59248254 I
e rheMac3.chr19              60567672 611 +  64156825 I

a score=88498.000000
s hg38.chr19_GL949751v2_alt    827215  94 +   1002683 acccaggaggtcgagtcttcagtaagcaaagatagtgccacggcgctccagcctgggaaacagagcaagaccctgtatc---------atttttaaaaaTGGT
s panTro4.chr19              59829148  94 +  63644993 acccaggaggtcgaggcttcagtaagccaagatagtgccacggcgctccagcctggggaacagagcaagaccctgtatc---------aTTTTTTAAAATGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742496  89 +  60714840 acccaggaggttgaggcttcagtaagccaagatagtgccacggcgctccagcctggggaacacagcaagaccctgtatc---------attttaaaaa-----
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55693843 100 +  59248254 acccaggaggtagaggttgcagtgaaccgagattgtgccattgcactccagcctgggtgacagagcaagactccatctc---aaaaaaaaaaaaacaaaTGGT
i macFas5.chr19             I 502 C 0
s papAnu2.chr19              47807136 103 +  51301725 acccaggaggtagaggttgcagtgagccgagattgtgccactgcactccagcctgggtgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaaatggt
i papAnu2.chr19             I 498 C 0
s chlSab2.chr6               47523451  94 +  50890351 acccaggaggtcgaggcttcagtgagccaagatagtgccatggcactccagcctggggaacagagcgaggccctgtacc---------attttaaaaaaTGGT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e rheMac3.chr19              60567672 611 +  64156825 I

a score=73732.000000
s hg38.chr19_GL949751v2_alt    827309 48 +   1002683 TTTAGACGGTAAATCTTCTATTGTGTGTATTTGACCaaaataataatt
s panTro4.chr19              59829242 48 +  63644993 TTTAGATGGTAAATCTTCTATTGTGTGTATTTGACCAAAATAATAATT
i panTro4.chr19             C 0 I 8
s ponAbe2.chr19              56742585 36 +  60714840 -----aCGGTAAATCTTCTATTGTGTGTATTTGACCaaaaa-------
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60568283 48 +  64156825 TTTAGATGGTAAATCTTCTATTGTGTGTATTTGACCaaaataataata
i rheMac3.chr19             I 611 I 3
s macFas5.chr19              55693943 47 +  59248254 -TTAGATGGTAAATCTTCTATTGTGTGTATTTGACCAAAATAATAATA
i macFas5.chr19             C 0 I 555
s papAnu2.chr19              47807239 47 +  51301725 -ttagatGGTAAATCTTCTATTGTGTGTATTTgaccaaaataataatt
i papAnu2.chr19             C 0 I 9
s chlSab2.chr6               47523545 47 +  50890351 -TTAGATGGTAAGTATTCTATTGTGTGTATTTGACCAAAATAATAATA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I

a score=4095.000000
s hg38.chr19_GL949751v2_alt    827357 3 +   1002683 aaa
s panTro4.chr19              59829298 3 +  63644993 aaa
i panTro4.chr19             I 8 C 0
s ponAbe2.chr19              56742621 3 +  60714840 aaa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60568334 3 +  64156825 aaa
i rheMac3.chr19             I 3 C 0
s macFas5.chr19              55694545 3 +  59248254 AAA
i macFas5.chr19             I 555 C 0
s papAnu2.chr19              47807295 3 +  51301725 aaa
i papAnu2.chr19             I 9 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e calJac3.chr22              45871417 487 +  49145316 I
e nomLeu3.chr10             103279675 116 - 106955855 I
e chlSab2.chr6               47523592 0 +  50890351 C

a score=14847.000000
s hg38.chr19_GL949751v2_alt    827360 10 +   1002683 a----aaaaaa------aaa
s panTro4.chr19              59829301 10 +  63644993 a----aaaaaa------aaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742624 10 +  60714840 a----aaaaaa------aaa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60568337 10 +  64156825 a----aaaaaa------aaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55694548 10 +  59248254 A----AAAAAA------AAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47807298 10 +  51301725 a----aaaaaa------aaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47523592 20 +  50890351 ATTTTAAAAAATTTTTTAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45871904 10 +  49145316 a----aaaata------caa
i calJac3.chr22             I 487 C 0
e canFam3.chr1               19989183 1526 - 122678785 I
e nomLeu3.chr10             103279675 116 - 106955855 I

a score=542563.000000
s hg38.chr19_GL949751v2_alt    827370 217 +   1002683 aaGCTGGCTgccaggcatggtggcaggcccctgtagtcccagctacttgggagggtgaggcaggagaaacgcttgaacccgggaggcagaggttgcagtgagccaagatcgtgtcactgcactccagcctgggcgacagagagagactccatctc-----------------------------------taaagaaa------------------------------------------------------gaaaaaaa-----------aaaaTAGCTGGCTGCTCATCACTGAGTTTCTGGTGTGGTGGCCCCA
s panTro4.chr19              59829311 223 +  63644993 aaGCTGGCTgccaggcatggtggcaggcccctgtagtcccagctacttggaagggtgaggcaggagaaatgcttgaatccgggaggcggaggttgcagtgagccgagatcgtgtcactgcactccagcctgggcgacagagagagactccatctc-----------------------------------taaaaaaaagaaaa------------------------------------------------gaaaaaaa-----------aaaaTAGCTGGCTGCTCATCACTGAGTTTCTGGTGTGGTGGCCCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742634 211 +  60714840 aaGCTGGCTgccagacatggtggcaggcccctgtagtcccagctacttgggagggtgaggcaggagaaacgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgtcactgc-------------------agcgagactccatctc-----------------------------------taaaaaaaaacaaagaaaa-----------------------------------------ggaaaaaaaa-----------CAAATAGCTGGCTATTCACCACTGAGTTTCTGGTGTGGTGGCCCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103279791 227 - 106955855 AAACTGGCTgccagacatggtggtaggcccctgtagtcccagctacttgggaggctgaggcaggagaaacgcttgaacccaggaggcggaggtttcagtgagccgagattgcgtcactgcactccagcctgggcgacagagcgagactccatctc-----------------------------------taaaaaaagaaagaaaag--------------------------------------------aaaaaaag-----------caaaTAGCTGGCTGCCCATCACTGAGTTTCTGGTGTGGTGGTCCCA
i nomLeu3.chr10             I 116 C 0
s rheMac3.chr19              60568347 244 +  64156825 aaGCTGGCTgccaggcatggtggcaggccgctgcagtcccagctacttgggaggctgaggcaggagaaacgcttgaacccaggaggcggagactgcagtgagccaagatcgcatcactgcactccagcct-ggcgtcagagcgagactccgtctc-----------------------------aaaaaaaaaaaaaaaaaagaaaagaaaaGAAAGG--------------------------------AGAAAATATA-----------CAAATAGCTGGCTGCTCATCTCTGAGTTTCTGGTGCGGTGGCCCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55694558 244 +  59248254 AAGCTGGCTgccaggcatggtggcaggccgctgcagtcccagctacttgggaggctgaggcaggagaaatgcttgaacccaggaggcggagactgcagtgagccaagatcgcatcactgcactccagcct-ggcgacagagcgagactccgtctc-----------------------------aaaaaaaaaaaaaaaaaagaaaagaaaaGAAAGG--------------------------------AGAAAATATA-----------CAAATAGCTGGCTGCTCATCTCTGAGTTTCTGGTGCGGTGGCCCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47807308 238 +  51301725 aagctggctgccaggcatggtggcaggccgctgcagtcccagctcctcgggaggctgaggcaggagaaacgcgtgaacccaggaggcggagactgcagtgagccaagatcgcgccactgcactccagcct-ggcgacagagcgagattccgtctc-----------------------------------aaaaaaaaacaagaaaagaaaagaaagg--------------------------------agaaaatata-----------caaatagctgGCTGCTCATCTCTGAGTTTCTGGTGCGGTGGCCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47523612 274 +  50890351 AAGCTGGCTgccaggcatggtggcgggccgctgcagttccagctacttgggaggctgaggcaggagacccgcttgaacccgggaggtggaggttgcagtgagccaagatcgcgtctctgcacttcagcttgggtgacagagcgagactccttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaagaaaagaaaagaaagg--------------------------------agaaaatata-----------caaaTAGCTGGCTGCCCATCTCTGAGTTTCTGGTGCGGTGGCCCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45871914 279 +  49145316 aatttagtt---aggcgtggtggcaggcacctgtcgtcccagccactcaggaggctgaggcaggagaaacacttgaacccggcaggcggaggttgcactgagctgagatcacgccactgcactccagcctgagcaacagagtgagatgccatctc-----------------------------------TCAAACAGATAAATACATTTAAAAATGGCTTAGATGGTAAATCTTCTAAAATAATTTGACCAAAATAATAATAATTTTTCTAAAACAGCTGGCTGCTCATCACTGAGTTTCTGGTGCGGGGACCCCG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19989183 1526 - 122678785 I

a score=1356635.000000
s hg38.chr19_GL949751v2_alt    827587 381 +   1002683 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAGAAGGTGACCTTCTACTGCCGTCTAGACACTGCAACAAGCATGTTCTTACTGCTCAAGGAGGGAAGATCCAGCCACGTACAGCGCGGATACGGGAAGGTCCAGGCGGAGTTCCCCCTGGGCCCTGTGACCACAGCCCACCGAGGGACATACCGATGTTTTGGCTCCTATAACAACCATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACACCCTTCGCCGC--CA---TGTCCTACCTGGAGCCCTGAGGGATCCCCAGAGAGTGAT-GGGGAGGGTGTC----------
s panTro4.chr19              59829534 381 +  63644993 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAGAAGGTGACCTTCTACTGCCGTCTAGACACTGCAACAAGCATGTTCTTACTGCTCAAGGAGGGAAGATCCAGCCACGTACAGCGCGGATATGGGAAGGTCCAGGCGGAGTTCCCCCTGGGCCCTGTGACCACAGCCCACAGAGGGACATACCGATGTTTTGGCTCCTATAACAACCATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACACCCTTCGCCGC--CA---TGTCCTACCTGGAGCCCTGAGGGATCCCCAGAGAGTGAT-GGGGAGGGTGTC----------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56742845 383 +  60714840 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAGAAGGTGACCTTCTACTGCCGTCTAGACACTGCAACAAGCATGTTCTTACTGCTCAAGGAGGGAAGATCCAGCCGCGTACAGCGCAGATACGGGAAGGTCCAGGCGGAGTTCCCCCTGGGCCCTGTGACCACAGCCCACAGAGGGACATACCGATGTTTTGGCTCCTATAACAACCATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAGATGCTCAATTCCCCCCGCCCCCCCCCGCCACA---CATCCTACCTGGAGCCCT-AAGGATCCCCAGAGAGTGATGGGGGAGGGTGTC----------
i ponAbe2.chr19             C 0 I 1366
s nomLeu3.chr10             103280018 381 - 106955855 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAGAAGGTGACCTTCTACTGCCGTCTAGACACTGCAACAAGCATGTTCTTACTGCTCAAGGAGGAAAGATCCACCCACGTACAGCGCGGATACGGGAAGGTCCAGGCGGAGTTCCCCCTGGGCCCTGTGACCACAGCCCACAGAGGGACATACCGATGTTTTGGCTCCTATAACAAGCATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACACCCCCCACCGC--CA---TGTCCTACCTGGAGCCCTAAGGGATCCCCAGAGAGTGAT-GGGGAGGGTGTC----------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60568591 381 +  64156825 CCTTCTCTCATAGAAATGTATGACACACCCACGCTCTCGGTTCATCCTGGACCCGAAGTGACCTCGGGTGAGAAGGTGACCTTCTACTGCCGTCTAGACACAGCAACAAGCATGTTCTTACTGCTCAAGGAGGGAAGATCCAGAGACGTGCAGCGCAGCTACGGGAAGGTCCAGGCGGAGTTCCCCGTGGGCCCTGTGACCACAGCCCACAGAGGGTCATACCGATGTTTTGGCTCCTATAACAACTATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACAGCCCCCGCCGC--CG---TGTCCTACCCGGAGCCCTAAGGGATGCCCAGAGAGTGAC-AGGGAGGGTGTC----------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55694802 381 +  59248254 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGACCTCGGGTGAGAAGGTGACCTTCTACTGCCGTCTAGACACAGCAACAAGCATGTTCTTACTGCTCAAGGAGGGAAGATCCAGAGACGTGCAGCGCAGCTACGGGAAGGTCCAGGCGGAGTTCCCCATGGGCCCTGTGACCACAGCCCACAGAGGGTCATACCGATGTTTTGGCTCCTATAACAACTATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACAGCCCCCGCCGC--CG---TGTCCTACCCGGAGCCCTAAGGGATGCCCAGAGAGTGAC-GGGGAGGGTGTC----------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47807546 381 +  51301725 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGACCTCGGGTGAGAAGGTGACCTTCTACTGCCGTCTAGACACAGCAACAAGCATGTTCTTACTGCTCAAGGAGGGAAGATCCAGAGACGTGCAGCGCAGCTACGGGAAGGTCCAGGCAGAGTTCCCCATGGGCCCGGTGACCACAGCCCACAGAGGGTCATACCGATGTTTTGGCTCCTATAACAACTATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACAGCCCCCGCCGC--CA---TGTCCTACCCGGAGCCCTAAGGGATGCCCAGAGAGTGAT-GGGGAGGGTGTC----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47523886 384 +  50890351 CCTTCTCTCATAGAAATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGTGACCTCGGGTGAGAAGGTGACCTTCTACTGCCGTCTAGACACAGCAACAAGCATGTTCCTACTGCTCAAGGAGGGAAGATCCAGAGACGTGCAGCGCAGCTATGGGAAGGTCCAGGCGGAGTTCCCCATGGGCCCTGTGACCACAGCCCACAGAGGGACATACCGATGTTTTGGCTCCTATAACAACTATGCCTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAAATGCTCAATTCCCCACAGCCCCCGCCGC--CGCCATGTCCTACCCGGAGCCCTAAGGGATGCCCAGAGAGTGAT-GGGGAGGGTGTC----------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872193 377 +  49145316 CCTTCTCTCGTAGGAATGTATGACACGCCCACCCTCTCAGTTCATCCCAGACCGGAAGTGATCTCGGGCGAGAAGGTGACCTTCCATTGCCGTCTGGGGACTGCAACAAGCACCTTCTTTCTGCTCAAGGAGGGAAGATCCAG---CGTACGGCGCGGATACGGGAAGGTCCAGGCCGAATTCCCCTTGGGCTCTGTGACCACATCCCACAGAGGGACATACCGATGTTTTGGCTCCTACAACAACCATGCGTGGTCTTTCCCCAGTGAGCCAGTGAAGCTCCTGGTCACAGGTGAGGAGA-GCCCCGGTTCCCACACCTCCCGCTGC--CA---TGTCGTACCTGGAGCCCTAAGGGATCTCCAGATCGTGAT-GGGGAGGGTATC----------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19990709 380 - 122678785 CCTTCTCCCACAGGAATGTATGATACGCCCACTCTCTCCGTTCATCCCGGGAATAAGGTGATTTCGGGAAAGAACGTGACCTTCTCTTGCCGTCTAGACACTGCAACAAACAAGTTCTTTCTGCTCAAGGAGGGACGATCCAGCCACCCACAACACAGATATGGGAACATCCAGGTGGAGTTTCCCATAGGCCCTGTGACCACAGCCCACAGAGGGACGTACAGATGTTTTGGATCTTATAACAACCATGCGTGGTCTTTCCCCAGTAAGCCTGTGAAACTCCTGGTCACAGGTGAGGAAACTCCCAGATTTCCCC-----------T--CA---TGTCCCCTCTGGAACCCCAAGTAAACCCTGACCAGTGAT-GAGGAAGGGACAGGTGGGAAAC
i canFam3.chr1              I 1526 C 0

a score=171318.000000
s hg38.chr19_GL949751v2_alt    827968  80 +   1002683 CAAGGG---------------------------ACGTCCACTTCCTGGGTGCCTGGTTGGTCATG--TGAGGAAGAACACCAGAAG--CAGGAAGGAGGAGGGAGCAGAGA
s panTro4.chr19              59829915  80 +  63644993 CAAGGG---------------------------TCATCCACTTCCTGGGTGCCTGGTTGGTCATG--TGAGGAAGAACACCAGAAG--CAGGAAGGAGGAGGGAGCAGAGA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280399  80 - 106955855 CAAGGG---------------------------ACGTCCACTTCCTGGGGATCCAGTTGGTCATG--TGAGGAAGAACACCAGAAG--CAGGAAGGAGGAGGGAGAAGAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60568972  80 +  64156825 CAAGGG---------------------------ACGTCCACTTCCTGGGAGCCCAGTTGGTCATG--TGAGGAAGAACACCAGAAG--CAGGAAGGAGGAGGGAGCAGAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695183  80 +  59248254 CAAGGG---------------------------ACGTCCACTTCCTGGGAGCCCAGTTGGTCATG--TGACGAAGAACACCAGAAG--CAGGAAGGAGGAGGGAGCAGAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47807927  56 +  51301725 CAAGGG---------------------------ACGTCCACTTCCCGGGAGCCCAGT--------------------------aag--caggaaggaggagggagcagaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524270  80 +  50890351 CAAGGG---------------------------ACGTCCACTTCCCGGGAGCCCAGTTGGTCATG--TGAGGAAGAACACCAGAAG--CAGGAAGGAGGAGGGAGCAGAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872570  80 +  49145316 AAAGGG---------------------------ACGTTGGCTTCCTGGGGGCCCAGGTGGTGGTG--TGAGGAAGATCACCAGAAA--CAGGAAGGAAGAAGGTGCAGAGA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19991089 111 - 122678785 CACGGAGAGCATCTCGCTCCAGCACCCTCATCCACATGCATTTTGTGGAGGCCCATTTGATTGTTCCTGAGGAAGAAGGCCAGAGGGACAAGAAGAGGGAGGGCCCAGAGA
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56743228 1366 +  60714840 I

a score=25571.000000
s hg38.chr19_GL949751v2_alt    828048 10 +   1002683 AAGGAATGGT
s panTro4.chr19              59829995 10 +  63644993 AAGGAATGGT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280479 10 - 106955855 AAGGAATGGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60569052 10 +  64156825 AAGGAATGGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695263 10 +  59248254 AAGGAATGGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47807983 10 +  51301725 aaggaatggt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524350 10 +  50890351 AAGGAATGGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872650 10 +  49145316 AAGAAATGGT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19991200  0 - 122678785 C
e ponAbe2.chr19              56743228 1366 +  60714840 I

a score=250356.000000
s hg38.chr19_GL949751v2_alt    828058 132 +   1002683 Aaggcgggtggatcacaaggtcaggagttcgagaccagcctggccaagacggtgaaaccccgtctctactaaaaatacagaaattagccagacgcagtggcggacacctgtagtcccagctactcaggaggc
s panTro4.chr19              59830005 132 +  63644993 Aaggcgggtggatcacaaggtcaggagttcgagaccagcctggccaagacggtgaaaccccgtctctactaaaaatacaaaaattagccagacgcagtggcggacacctgtagtcccagctactcaggaggc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280489 132 - 106955855 Aaggcaggtggatcatgaggtcaggagttcgagaccagcctggccaagacagtgaaaccccatctctactaaaaatacaaaaattagccagacgcagtggtggacacctatagtcccagctactcaggaggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60569062 132 +  64156825 Aaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaagacagtgaaaccctgtctctactaaaaatacaaaaattaaccagacggagtggcggacacctgtagtcccagctactcaggaggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695273 132 +  59248254 Aaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaagacggtgaaaccctgtctctactaaaaatacaaaaattaaccagacggagtggcggacacctgtagtcccagctactcaggaggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47807993 132 +  51301725 aaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaagacggtgaaaccctgtctctactaaaaatacaaaaattaaccagacggagtggcggacacctgtagtcccagctactcaggaggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524360 132 +  50890351 Aaggcgggcggatcacgaggtcaggaggtcgagaccagcctggccaagacggtgaaaccctgtctctactaaaaatacaaaaattaaccagacggagtggcggacacctgtagtcccagctactcaggaggc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19991200   0 - 122678785 C
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45872660   0 +  49145316 C

a score=24444.000000
s hg38.chr19_GL949751v2_alt    828190 9 +   1002683 tgaggcagg
s panTro4.chr19              59830137 9 +  63644993 tgaggcagg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280621 9 - 106955855 tgaggcagg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60569194 9 +  64156825 tgaggcagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695405 9 +  59248254 tgaggcagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808125 9 +  51301725 tgaggcagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524492 9 +  50890351 tgaggcagg
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19991200 9 - 122678785 TGAGGCAGG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45872660 0 +  49145316 C

a score=190776.000000
s hg38.chr19_GL949751v2_alt    828199 121 +   1002683 agaatcgcttgaacccgggaggcgggggttgtagtgaaccgagatcataccaccgcactgcaacctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaa-gaaTGGC
s panTro4.chr19              59830146 116 +  63644993 agaatcgcttgaacccgggaggcgggggttgtagtgaaccgagatcataccaccgcactgcaacctgggcgacagagcaagactccatctc-----aaaaaaaaaaaaaaaaaa-gaaTGGC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280630 120 - 106955855 agaatcgcttgaacctggcaggtggaggttgcagtaagccgagatcgtgccactgcactccagcctgggtgacagagaaagactccatctc-aaaaaaaaaaaaaaaaaaaaaa-gaaTGGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60569203 121 +  64156825 agaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcataccactgcactgcaacctgggcaacacagcaagattccatctc-caaaaaaaagaaaaaaaaaaaaTGAATGGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695414 116 +  59248254 agaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcataccactgcactgcaacctgggcaacacagcaagattccatctc-aaaaaaaaaaaaaaaaaa-----gaaTGGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808134 120 +  51301725 agaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcataccactgcactgcaacctgggcgacacagcaagattccatctc-aaaaaaaaaaaaaaaaaaaaaa-gaatggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524501 112 +  50890351 agaatcgcttgaacccaggaggtagaggttgcagtgagccgagatcataccactgcactacaacctgggcaacacagcaagattccatcta-caaaaaaaaaaaaa---------gaaTGGC
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19991209   0 - 122678785 C
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45872660   0 +  49145316 C

a score=504229.000000
s hg38.chr19_GL949751v2_alt    828320 186 +   1002683 AAGACCGGAGGAAACCAAAAACCCTTACTTTTTTTTCTTTATCTCCTTTTCCAGGCGACATTGAGAACACCAGCCTTGCACCTGAAGACCCCA---CCTTTCCTGGTGAGTAACTGGTCCTTCTAAGCTCAGACGAGCAATCAGAGCCTCCCAGTGACACTAAAAACGTGGCATTCATTCAAAATATTC
s panTro4.chr19              59830262 186 +  63644993 AAGACCGGAGGAAACCCAAAACCCTTACTTTTTTTTCTTTATCTCCTTTTCCAGGCGACATTGAGAACACCAGCCTTGCACCTGAAGACCCCA---CCTTTCCTGGTGAGTAACTGGTCCTTCTAAGCTCAGACGAGCGATCAGAGCCTCCCAGTGACACTAAAAACGTGGCATTCATTCAAAATATTC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280750 185 - 106955855 AAGACTAGAGGAAACCCAAAACCCTTAC-TTTTTTTCTTTATCTCCTTTTCCAGGTGACATTGAGAACACCAGCCTTGCACCTGAAGACCCCA---CCTTTCCTGGTGAGTAACTGCTCCTTCTAAGCTCAGAGGAGAGATCAGAGCCTCCCAATGATACTAAAAACGTGGCATTCATTCAAAATATTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60569324 185 +  64156825 AAGACTGGAGGAAACCCAAAATCCTTAC-TTTTTTTCTTTATCTCCTTTTCCAGGCGACACTGAGAACACCAGCCTTGCACCTACAGACCCCA---CCTTTCCCAGTGAGTAACTAGTCCTTCTAAGCTCAGAGGAGAGATCAGAGCCTCCCAGGGACACTAAAAACATGGCATTCATTCAAAATATTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695530 186 +  59248254 AAGACTGGAGGAAACCCAAAATCCTTACTTTTTTTTCTTTATCTCCTTTTCCAGGCGACATTGAGAACACCAGCCTTGCACCTACAGACCCCA---CCTTTCCCGGTGAGTAACTAGTCCTTCTAAGCTCAGAGGAGAGATCAGAGCCTCCCAGGGACACTAAAAACATGGCATTCATTCAAAATATTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808254 185 +  51301725 aagaCTGGAGGAAACCCAAAatccttac-tttttttctttatctccttttcCAGGCGACATTGAGAACACCAGCCTTGCACCTACAGACCCCA---CCTTTCCCGGTGAGTAACTAGTCCTTCTAAGCGCAGAGGAGAGATCAGAGCCTCCCAGGGACACTAAAAACATGGCATTCATTCAAAATATtc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524613 185 +  50890351 AAGACTGGAGGAAACCCAAAATCCTTAC-TTTTTTTCTTTATCTCCTTTTCCAGACGACATTGAGAACACCAGCCTTGCACCTACAGACCCCA---CCTTTCCCGGTGAGTAACTAGTCCTTCTAAGCTCAGAGGAGAGATCAGAGCCTCCCAGGGACACTAAAAACATGGCATTCATTCAAAATATTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872660 185 +  49145316 CAGACCAGGGGAAACTCAAAAGCCTTCC-TTACGTTCTTCATCTCCTTTTCCAGGTGACACAGAGAATACCAGCCTGGCACCTACAGACCCCA---CCTCTCCTGGTGAGTAACTGGTCCTTCTAAGCTCAGAGGAGGAATCAGAGGCTCCCAATGACACTAAAAACGGGGCATTCATTCAAAATATTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19991209 186 - 122678785 AAGACCGGAGGAAACCCAAAACCCTCA--TGGTTTTCTTTGTTTCCACTGCCAGAAGGTGTTGGGGACACCAGCCTTGTACCCACAGAACATACATCTTTTTCTGGTGAGTAACAGGTATTTCTAAGCCTGGGGAAGGGAGCAAAGCCTCCCAGTG-CATTAAAAACATGGCATTTGTTCAAAATATCC
i canFam3.chr1              C 0 I 703
e ponAbe2.chr19              56743228 1366 +  60714840 I

a score=79478.000000
s hg38.chr19_GL949751v2_alt    828506 37 +   1002683 ATCGAggccaggcgtggtggctcacgcctgtaatccc
s panTro4.chr19              59830448 37 +  63644993 ATCGAggccaggcgtggtggctcacgcctgtaatccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103280935 36 - 106955855 GTCGAGGCTGGGCGCGGTGGCTCA-GCTTGTAATCCC
i nomLeu3.chr10             C 0 I 807
s rheMac3.chr19              60569509 37 +  64156825 ATCGAggccaggagcagtggctcacgcctgtaatccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55695716 37 +  59248254 ATCGAggccaggagcagtggctcacgcctgtaatccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808439 37 +  51301725 attgaggccgggcgcggtggctcacgcctgtaatccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524798 37 +  50890351 ATCGAggccaggcgcggtggctcacgcctgtaatccc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872845 37 +  49145316 ATCAAggctgagcatggtggctcactcctataatccc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I

a score=29718.000000
s hg38.chr19_GL949751v2_alt    828543 16 +   1002683 agcactttgggaggcc
s panTro4.chr19              59830485 16 +  63644993 agcactttgggaggcc
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60569546 16 +  64156825 agcactttgggaggcc
i rheMac3.chr19             C 0 I 1121
s macFas5.chr19              55695753 16 +  59248254 agcactttgggaggcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808476 16 +  51301725 agcactttgggaggcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524835 16 +  50890351 aacactttgggaggcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872882 16 +  49145316 agcacgctgggaggcc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e nomLeu3.chr10             103280971 807 - 106955855 I

a score=165696.000000
s hg38.chr19_GL949751v2_alt    828559 151 +   1002683 gagat-ggtgcatcatttgaggtcaggagtttgagaccagcctggccaacatggcgaaaccctgtctctactaaaaatacaaaacttag---gctgggcatcatggctcacacctgtaatcccaacacttcgggaggccaaggtggttggatcac
s panTro4.chr19              59830501 151 +  63644993 gagat-ggtgcatcacttgaggtcaggagtttgagaccagcctggccaacatggcgaaaccctgtctctactaaaaatacaaaacttag---gctgggcatcatgactcacacctgtaatcccaacacttcgggaggccaaggtggttggatcac
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55695769 151 +  59248254 aggat-ggtgcatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaattag---gctgagcactatggctcactcctgtaatcccagcactttgggaggctgaggcaggcagatcac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808492 151 +  51301725 aggat-ggtgcatcacttgaggtcaggagttcaagaccagcccggccaacatggcgaaaccccatctctactaaaaatacaaaaattag---gctgagcaccatggctcagtcctgtaatcccagcactttgggaggctgaggcaggcagatcac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47524851 151 +  50890351 gggat-ggtgcatcacttgaggtcaggagttcaagaccagcctggccagcatggcaaaaacccatctctactaaaaatacaaaaattag---gctgggcaccatggctcactcctgtaatcccagcactttgggaggctgaggcaggcagatcac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45872898 151 +  49145316 gagatgggtgcatcacttgaggtcaggagttcgagaccagcctggccaacatagtgaaaacctgtctctactaaaaatacaaaaattagtcagctgtg-gtaatgg---acacctgtaatccgagctactctggaggctgaggcaggagaatcgc
i calJac3.chr22             C 0 I 598
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=159239.000000
s hg38.chr19_GL949751v2_alt    828710 186 +   1002683 aaggtcaggaattcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggcctggtggtgctcgcctgtaatcccagctactcaggaggctgaggcaggagaattg-ttgaacctgggatgcagaggttgcagtgagctgagatcgcgccactgcattcca
s panTro4.chr19              59830652 186 +  63644993 aaggtcaggaattcaagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggcctggtggtgctcgcctgtaatcccagctactcaggaggctgaggcaggagaattg-ttgaacctgggatgcggaggttgcagtgagctgagatcgcgccactgcattcca
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55695920 187 +  59248254 aaggtcaggaattcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggtactcacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaaccagggaggcggaggttgcagtgagctgagattgcaccattgcactcca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47808643 187 +  51301725 aaggtcaggaatttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtactcacctgtaatcccagctacttgggaggctgaggcaggagaatggcttgaaccagggaggcagaggttgcagtgagctgagatcacgccactgcactcca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47525002 187 +  50890351 aaggtcaggaattcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtactcacctgtaatcccagctacttaggaggctgaggcagaagaatcgtttgaaccagggaggcagaggttgcagtgagctgagattgcgccattgcactcca
i chlSab2.chr6              C 0 I 817
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=15465.000000
s hg38.chr19_GL949751v2_alt    828896 51 +   1002683 ctccactgcacgacacagcgagactccatctcacagaaaaacaaaaacaaa
s panTro4.chr19              59830838 51 +  63644993 ctccactgcacgacacagcgagactccatctcacagaaaaacaaaaacaaa
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55696107 48 +  59248254 ---gcctgggcaatagagacagattctgtctcaaaaaaaaaaaaaaagaaa
i macFas5.chr19             C 0 I 280
s papAnu2.chr19              47808830 48 +  51301725 ---gcctgggtgacagagcgagactccatctcacaaaaaaaacaaaagcaa
i papAnu2.chr19             C 0 I 1
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e chlSab2.chr6               47525189 817 +  50890351 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=573.000000
s hg38.chr19_GL949751v2_alt    828947 2 +   1002683 aC
s panTro4.chr19              59830889 2 +  63644993 aC
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47808879 2 +  51301725 ac
i papAnu2.chr19             I 1 I 162
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e chlSab2.chr6               47525189 817 +  50890351 I
e macFas5.chr19              55696155 280 +  59248254 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=72299.000000
s hg38.chr19_GL949751v2_alt    828949 305 +   1002683 TAT--TATATata----tatattcatcaagtgcatagtatacacagtgaactacactgtaacagtcagccaggcagatatcttgactctgcagcacttagattctagcaggaggagacacaccatcggtcaacgtcaggatagcacacaggagggaatgatgctatggaaggaaaagacaaagtagaacagacttacagtgattgaaatggcagctagcaatattaaataggtttgtccagatggacctcacagagaaagaaggcatctgagcaaatgcgttcagacttgagttaatcatgtggctgtcag
s panTro4.chr19              59830891 306 +  63644993 TATTATATATata----tatattcatcaagtgcatagtatacacagtgaactacactgtaacagtcagccaggcaaatatcttgacggtgcagcacttagattctagcaggaggagacacaccatcggtcaacgtcaggatagcacataggagggaatgatgctatggaaggaaaagacaaagtagaacagacttacagtgattgaaatggcagctagcaatattaaataggtttgtccagatggacctcacagag-aagaaggcatctgagcaaatgcgttcagactggagttaatcatgtggctgtcag
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47809043 307 +  51301725 tattatatatataattttatatatatatagtgcatagtatataCGGTGAACTACACTGTAACAGTCAGCCAGGCAACTATCTTGACTCTGTGGCACTTAGATTCTAGCAGAAGGAGACAGACCATGGATCAATGTCAGGATAGCACATAGGAGGAAATGATGCTATGGAAGGAAAAGACGAAGTAGAACAGACTTACAGGGACTGAAATGGCAGGTAGCAGTATTAAATAGGGTTGTCCAGATGGACCTCACAGAG----AAGGCATCTGAACAAATGCGTTCAGACTTGAGTTAGTCACGTGGCTCGCAG
i papAnu2.chr19             I 162 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e chlSab2.chr6               47525189 817 +  50890351 I
e macFas5.chr19              55696155 280 +  59248254 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=74852.000000
s hg38.chr19_GL949751v2_alt    829254 155 +   1002683 gagaaaggaggctctggagagaatgaaatggcatctgcctgtgccctggggcaggaagataactggggtaatacaataataactatgaggccaggagggttgaaAATGATGTTTGGAAGATGAC------GGTGGGATGGGCCTGGGGC-GCACGGCTAGGA
s panTro4.chr19              59831197 155 +  63644993 gagaaaggaggctctggacagaatgaaatggcatctgcctgtgccctggggcaggaagataactggggtaatacaataataactatgaggccaggagggttgaaAATTATGTTTGGAAGATGAC------GGTGGGATGGGGCTGGGGC-GCACGGTTAGGA
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55696435 161 +  59248254 gagaaaggaggctccagagagag-gaaatggcctctgcctgtgccctggggcaggacgatgactggggtaataaaataataactatgaggccaggagggttgaaAATGATGTTTGGAAAATGACAGTGGGGATGGGATGGGGCTGGGGCTGCACGGTTAGGA
i macFas5.chr19             I 280 I 6
s papAnu2.chr19              47809350 161 +  51301725 GAGAAAGGAGGCTCCAGAGAGAG-GAAATGGCCTCTGCCTGTGCCCTGGGGCAGGACGATGACTggggtaataaaataataactatgaGGCCAGGAGGGTTGAAAATGATGTTTGGAAAATGACAGTGGGGAtgggatggggctggggctgcACCGTTAGGA
i papAnu2.chr19             C 0 I 5
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e chlSab2.chr6               47525189 817 +  50890351 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=25983.000000
s hg38.chr19_GL949751v2_alt    829409 322 +   1002683 TT-------ACAGGAGTGAggcccggcgcggtggctcacgcctgtaatcccagcactttgggaaaccgaggcaggtgggtcatgaggtcaggagatcaagaccatcctggctaacacggtgaaaccctgtctctact-aaaaaaaaatacaaaaattatccgggcgtggtggcgggcgcctgtagtcccagctacacaagaggctgaggcaggagaatggcgtgaacccgggagacggagcttgcagtgagctgagatcgcgccactgcactccagcctgagcgacagagtgagactccgtctcaaaaaaaaaaaaaaagaaaaagaaaa
s panTro4.chr19              59831352 323 +  63644993 TGCTGAAAAAAAACAGTGAggcagggcatggtggctcacgcctgtaatcccagcactttgggaagccgaggcgggtggatcatgaggtcaggagatcaagaccatcctggctaacacagtgaaaccctgtctctactaaaaaaaaaatacaaaaattatccgggcgtggtggtgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggagacggagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagtgagactccgtctcaaaaaaaaa-------aaaaagaaaa
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e nomLeu3.chr10             103280971 807 - 106955855 I
e chlSab2.chr6               47525189 817 +  50890351 I
e papAnu2.chr19              47809511   5 +  51301725 I
e macFas5.chr19              55696596   6 +  59248254 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=311.000000
s hg38.chr19_GL949751v2_alt    829731 2 +   1002683 ag
s panTro4.chr19              59831675 2 +  63644993 ag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103281778 2 - 106955855 AA
i nomLeu3.chr10             I 807 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e chlSab2.chr6               47525189 817 +  50890351 I
e papAnu2.chr19              47809511 5 +  51301725 I
e macFas5.chr19              55696596 6 +  59248254 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt    829733 1 +   1002683 a
s panTro4.chr19              59831677 1 +  63644993 a
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103281780 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55696602 1 +  59248254 A
i macFas5.chr19             I 6 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e chlSab2.chr6               47525189 817 +  50890351 I
e papAnu2.chr19              47809511 5 +  51301725 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=910.000000
s hg38.chr19_GL949751v2_alt    829734 1 +   1002683 a
s panTro4.chr19              59831678 1 +  63644993 a
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103281781 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55696603 1 +  59248254 A
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47809516 1 +  51301725 a
i papAnu2.chr19             I 5 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e calJac3.chr22              45873049 598 +  49145316 I
e chlSab2.chr6               47525189 817 +  50890351 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=31170.000000
s hg38.chr19_GL949751v2_alt    829735 36 +   1002683 AAAAAAATAGTGAGACTTTGAATTTCACTATGTGTG
s panTro4.chr19              59831679 28 +  63644993 aaaaaaaTAGTGAGACTTTGGATTTCAC--------
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103281782 36 - 106955855 AAAAAAATAGTGAGACTTTGAATTTGACTATGTGTG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55696604 28 +  59248254 AAAAAAATAGTGAGACTTTGAATTTGAC--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47809517 28 +  51301725 aaaaaaatagtgagaCTTTGAATTTGAC--------
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45873647 28 +  49145316 AGAAAAACAGTGAGACTTTGAATTTGAC--------
i calJac3.chr22             I 598 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e ponAbe2.chr19              56743228 1366 +  60714840 I
e chlSab2.chr6               47525189 817 +  50890351 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=3128.000000
s hg38.chr19_GL949751v2_alt    829771 3 +   1002683 TAT
s panTro4.chr19              59831707 3 +  63644993 TAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56744594 3 +  60714840 TAT
i ponAbe2.chr19             I 1366 C 0
s macFas5.chr19              55696632 3 +  59248254 TAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47809545 3 +  51301725 TAC
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45873675 3 +  49145316 TAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e nomLeu3.chr10             103281818 0 - 106955855 C
e chlSab2.chr6               47525189 817 +  50890351 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=145450.000000
s hg38.chr19_GL949751v2_alt    829774 78 +   1002683 GTGTGAGGAGAAAGAGGTAATGATGACTTAATGAGGAAAATGAGGCTTAAATAGAAG---ACGggctgggccgggtggctc
s panTro4.chr19              59831710 78 +  63644993 GTGTGAGGAGAAAGAGGTAATGATGACTTAATGAGGAAAATGAGGCTTAAATAGAAG---ACCggctgggccgggtggctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56744597 81 +  60714840 GTGTGAGGAGAAAGAGGTAATGATGACTTAACGAGGAAAATGAGGCTTAAATAGAAGGACAGGggctgggctgggtggctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103281818 73 - 106955855 -----AGGAGAAGGACCTAATGATGACTGAATGAGGAAAATGAGGCTTAAATAGAAG---ACGggctgggccgggtggctc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55696635 80 +  59248254 CTGTGAGGGGAAAGAGGTAATGATGACTTAATGAGGAAAATGAGGCTTACACAGAAG-ACAGGggctgggccgtgtggttc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47809548 80 +  51301725 ATGTGAGGGGAAAGAGGTAATGATGActtaatgaggaaaatgaggcttacACAGAAG-ACAGGGGCTGGGCCGTGTGATTc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47526006 77 +  50890351 GTGTGAGGGGAAAGAGGTAATGATGACTTAATGAGGAAAATGAGGCTTACACAGAAG-ACAGGGGCTG---CGTgtggttc
i chlSab2.chr6              I 817 C 0
s calJac3.chr22              45873678 76 +  49145316 GTGTGAGGAGA--GGAGTGATGCT--CTTAATGAGGAAAATGAGGCTTAGGTAGAAG-ACCTGggctgggcgtggtggctc
i calJac3.chr22             C 0 I 3
e canFam3.chr1               19991395 703 - 122678785 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=107764.000000
s hg38.chr19_GL949751v2_alt    829852 62 +   1002683 ccgcatgtaatcccagcactttggaaggcaggggcggctggatcacttgaggtcaggagttc
s panTro4.chr19              59831788 62 +  63644993 ccgcatgtaatcccagcactttggaaggcaggggcggctggatcacttgaggtcaggagttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56744678 62 +  60714840 gcgcatgcgatctcagcactttggaaggcagaggcaggtggatcacttgaggtcaggagttc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103281891 62 - 106955855 ccgcatgtaatcccagcacttcggaaggcaggggcaggtggatcacttgagatcaggagttc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55696715 62 +  59248254 ccgcgtgtaatcccagcactttggaaggcagaggtgggtggatcacttgagatcaggagatc
i macFas5.chr19             C 0 I 312
s papAnu2.chr19              47809628 62 +  51301725 ccgcgtgtaatcccagcactttggaaggcagaggcgggcggatcacttgaggtcaggagatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47526083 62 +  50890351 ccgcgtgtaatcccagcacttaggaaggcagaggcgggtggatcacttgaggtcaggagatc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e calJac3.chr22              45873754  3 +  49145316 I
e rheMac3.chr19              60569562 1121 +  64156825 I

a score=406279.000000
s hg38.chr19_GL949751v2_alt    829914 181 +   1002683 aagaccagcctggccaacacagtgaaaccccatctctactaaaaatacaaacatgagttgggtgtggtggcgcacgccagtaattacagctactcggggctgaagcaagaggattgcttgaactcgggaggcggaggttgcagtgagctgagatcacaccactgtactccagcctCAGAGg
s panTro4.chr19              59831850 181 +  63644993 aagaccagcctggccaacacagtgaaaccccatctctactaaaaatacaaacattagttgggtgtggtggcgcatgccagtaattacagctactgggggctgaagcaagaggattgcttgaactcgggaggcggaggttgcagtgagctgagatcacaccactgtactccagcctcggAGg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56744740 181 +  60714840 gagaccagcctggccaacacagtgaaaccctgtctctactaaaaatacaaacattagctgggcgtggtggtgcacgcctgtaattacaggtactcggggctgaagcaagaggattgcttgaacttgggaggcggaggttgcagtgagctgagatcacaccactgcactccagcctcggAGg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103281953 181 - 106955855 gagaccagcctggccaacacagtgaaaccccgtctctactaaaaatacaaacattagctgggcgtggtggcgcacgcccataattacagctactcggggctgaagcaagaggattgcttgaactcgggaggcggaggttgcagtgagctgagatcacaccactgcactccaacctcggAGg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60570683 179 +  64156825 Aagaccagcctggccaacacagtgaaaccccatctctactaaacatacaaacattaggtaggcatggtggcacatgct-gtaattacagctactcggggctgaggcaagaggatcgctt-aattcgggaggctgaggttgcagtgagctgagatcgcaccactgcgctccagcctggAAGg
i rheMac3.chr19             I 1121 C 0
s macFas5.chr19              55697089 179 +  59248254 aagaccagcctggccaacgtggtgaaaccccatctctactaaacatacaaacattaggtaggcatggtggcacatgct-gtaattacagctactcggggctgaggcaagaggatcgctt-aattcgggaggctgaggttgcagtgagctgagatcgcaccactgcgctccagcctggAAGg
i macFas5.chr19             I 312 C 0
s papAnu2.chr19              47809690 179 +  51301725 gagaccagcctggccaacacagtgaaaccccatctctactaaacatacaaacattaggtgggcgtggtggcacacgct-gtaattacagctacccagggctgaggcaagaggatcgctt-aactcgggaggctaaggttgcagtgagctgagatcgcaccactgcgctccagcctggaagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47526145 180 +  50890351 gagaccagcctggccaacacagtgaaaccccatctctactaaacatacaaacattaggtgggcgtggtggcacacgct-gtaattacagctactcggggctgaggcaagaggatcgcttaaactcggcaggctgaggttgcagcaagctgagatcgcaccactgcgctccggcctggAAGg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19991395 703 - 122678785 I
e calJac3.chr22              45873754   3 +  49145316 I

a score=451536.000000
s hg38.chr19_GL949751v2_alt    830095 198 +   1002683 cctgtcatcccagccctttgggag-------------------------------------------------------------------gccgaagcaggcaggtcatctgaggttgggagttcaagaccagcctggccaacatggc-aaaacccc-gtttctactaaaaatatgaaaaaaattacctgggtat-gtggtgtgtgcctgtagtcccagctactccagaggctgGAAC-----------------------------------------------------------------------------ACAGT-GAGACTCTATCTC-----AAAAAAAAA-----------AA
s panTro4.chr19              59832031 203 +  63644993 cctgtaatcccagccctttgggag-------------------------------------------------------------------gccgaagcaggcaggtcatctgaggttgggagttcaagaccagcctggccaacatggc-aaaacccc-gtttctactaaaaatatgaaaaaaattacctgggtat-gtggtgtgtgcctgtagtcccagctactccagaggctgGAAC-----------------------------------------------------------------------------ACAGT-GAGACTCTATCTC-----AAAAAAAAAA------AAACAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56744921 264 +  60714840 cctgtaatcccagacctttgggagaccaaagccagcaggtcaTACCACTGCACTCCAGCCTCGGAGgcctgtaatcccagacctttgggaagccgaagccagcaggtcatctgaggtcgggagttcgagaccagcctggccaacatgcc-aaaacccc---ctctactaaaaatatgaaaaaaattagctgggtgt-gtggtgtgtgcctgtagtcccagctactccagagtctgGAAC-----------------------------------------------------------------------------AAAGCAAAGACTCTAGCTC-----AAAAAAAAC-----------AA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103282134 209 - 106955855 cctgtaatcccagccctttgggag-------------------------------------------------------------------gccgaagcgggcaggtcatctgaggtcaagagttcaagatcagcttggccaacatggc-aaaacccc-gtctctattaaaaatatgaaaaaaattacctgggtgt-gtggtgtgtgcatgtagtcccaggtactccggtggctgaaac-----------------------------------------------------------------------------aCAGC-GAGACTCTATCTC-----AAAAAAAAACTCGTCTCAAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60570862 206 +  64156825 cctgtaatcccagccctttgggag-------------------------------------------------------------------gccaaagcaggcaggtcatctgagattgggagttcgagaccagcctggc-----tggcaaaaacgcc-atctctactaaaaatatgaaaaaaattagccaggtgtggtggcgtgtgcctgtagtcccagctactcgggaggctgGAAA-----------------------------------------------------------------------------AGAGC-GAGACTCTATCTC-----AAAAAAAAAAACAAACAAACAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55697268 207 +  59248254 cctgtaatcccagccctttgggag-------------------------------------------------------------------gccaaagcaggcaggtcatctgagattgggagttcgagaccagcctggc-----tggcaaaaacgcc-atctctactaaaaatatgaaaaaaattagccaggtgtggtggcgtgtgcctgtagtcccagctactcgggaggctggaac-----------------------------------------------------------------------------agAGC-GAGACTCTATCTC----aaaaaaaaaaaacaaacaaacaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47809869 210 +  51301725 cctgtaatcccagccctttgggag-------------------------------------------------------------------gccgaagcaggcaggtCATCtcagattgggagttcgagaccagcctggc-----tggc-aaaacgcc-gtctctactaaaaatatgaaaaaaattagccaggtgtggtggcgtgtgcctgtagtcccagctactcgggaggctggaac-----------------------------------------------------------------------------agagc-cagactctatctcaaaaaaaaaaaaaaaacaaacaaacaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47526325 205 +  50890351 cctgtaatcccagccctttgggag-------------------------------------------------------------------gccgaagcaggcaggtcatctgagattgggagttcgagaccagcctggc-----tggc-aaaacgcc-gtctctactaaaaatatgaaaaaaattagccaggtgtggtggcgtgtgcctgtagtcccagctattcgggaggctggaac-----------------------------------------------------------------------------agAGC-GAGACTCTATCTC-----AAAAAAAAAACCAAACAAACAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45873757 282 +  49145316 cctgtaatccccgcgcttcggaag-------------------------------------------------------------------gtagaggcgggcacatcacttgaggtcgggagtttgagaccagcctggccaacacagg-gaaacccctgtctctactaaaaatac---aaaaattagctgggcatggtggtgcatgcctgtaattacagctactc--ggggctgaagcaggagaatcacttgaactcgggaggcagagattacagtgagctgagattgtgccattgcacaccagcctgggcgacaagagt-gaaactgtgtctc-----aaaaaaaaaaaagaa-aaagaa
i calJac3.chr22             I 3 C 0
e canFam3.chr1               19991395 703 - 122678785 I

a score=1042435.000000
s hg38.chr19_GL949751v2_alt    830293 326 +   1002683 AAATAGAAGACATGACTGGTGCAAAGACACATGCTCACAAGTGCTAGAATGGAATTCCTCGTCAGGTTCGTCCATCTGTGGACCCTTCCACTTTACCTGCTGGATGAAGCTCCTGGGACCCGCAGGGTGAGGTGGGACCTTGTAAAGCTGCAGAACGTCATGGGGTAGACCCAAGGGAAGGAG-TGCTGGGGTGGAGGAGGTCAAAACCATCCTCTTTT-------CTTCACTTCCCTTATCATCAGCAGACACTTGGGGCACCTACCTTTTAACCACAGAGACGGGACTCCAGAAAGGTAAGTAGACAGCTGGG-GCCATAGGCTCTGAAGGAA
s panTro4.chr19              59832234 326 +  63644993 AAATAGAAGACATGACTGGTGCAAAGACACATGCTCACGAGTGCTAGACTGGAATTCCTCGCCAGCTTTGTCCATCTGTGGACCCTTCCACTTTACCCGCTGGATGAAGCTCCTGGGACCTGCAGGGTGGGGTGGGACCTTGCAAAGCTGCAGAACGTCATGGGGTAGACCCAAGGGAAGGAG-TGCTGGGGCGGAGGAGGTCAAAACCATCCTCTTTT-------CTTCACTTCCCTTATTATCAGCAGACCCTTGGGACACCTACCTTTTAACCACAGAGATGGGACTCCAGAAAGGTAAGTAGACAGCTGGG-GCCATAGGCTCTGAAGGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56745185 326 +  60714840 AAATAGAAGACATAACTGGTGCAAAGACACATGCTCATGAGTGCTAGACTGGAATTCCTCCTCAGGTTTGTCCATCTGTGGACCCTTCCACTTTACCTGCTGGATGAAGCTCCTGGGACCTGCAGGGTGGGGTAGGACCTTGCAAAGCTGCAGAACGTCATGGGGTAGACCCAAGAGAAGGAG-TGCTGGGGTGGAGGAGGTCAAAACCATCCTCTTTT-------CTTCACTTCCCTTATTATCAGCAGACCGTTGGGATACCTACCTTTTAACCACAGAGACGGGACTCCAGAAAGGTAAGTAGACAGCTAGG-GCCATAGGCTCTGAAGGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103282343 326 - 106955855 AAATAGAAGACATGACTGGTGCAAAGACACAAGCTCATGAGTGCTAGACTGGAATTCATCTTCAGCTTTGTCCATCTGTGGACCCTTCCACTTTACCTGCTGGATGAAGCTCCTGGGACCTGCAGGATGGGGTGGGACCTTGCAAAGCTGCAGAATGTCATGGGGTAGACCCAAGAGAAGGAG-TGCTGGGGTGGAGGAGGTCAAAACCGTCCTCTTTT-------CTTCACTTCCCTTATTATCAGCAGACCCCTGGGACACCTACCTTGTAACCACAGAGACGGGACTCCAGGAAGGTAAGTAGACAGCTGAG-ACCGTAGGCCCTGAAGGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60571068 326 +  64156825 AAATAGAAGACATGATTGGTGCAAAGATACATGCTCATGAGTTCTAGACTGGAATTCCTCCTCCGGTGTGTCCATCTGTGGACCCTTCCGCTTTACCTGCTGGATGAAGCTCCTGGGACTTGCAGGGTAGGGTAGGACCTTGCAAAGCTGCAGAACGTCATGGGGCGGACCCAAGGGAAGGAG-GGCGGGGGCGGAAGACGTCAACATCATTCTCTTTT-------CTTCACTTCCCTTATTATCAGCAGACTCTTGGGACACCTGCCTTTTAACCAGAGAGACGGGACTCCAGAAAGGTAAGTAGACACCTGGG-GCCATAGGCTCTGAAGGAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55697475 326 +  59248254 aaaTAGAAGACATGATTGGTGCAAAGATACATGCTCATGAGTTCTAGACTGGAATTCCTCCTCCGGTGTGTCCATCTGTGGACCCTTCCGCTTTACCTGCTGGATGAAGCTCCTGGGACTTGCAGGGTAGGGTAGGACCTTGCAAAGCTGCAGAACGTCATGGGGCGGACCCAAGGGAAGGAG-GGCGGGGGCGGAAGATGTCAACATCATTCTCTTTT-------CTTCACTTCCCTTATTATCAGCAGACTCTTGGGACACCTGCCTTTTAACCAGAGAGACGGGACTCCAGAAAGGTAAGTAGACACCTGGG-GCCATAGGCTCTGAAGGAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47810079 326 +  51301725 aaatagaagacaTGATTTGTGCAAAGATACATGCTCATGAGTTCTAGACTGGAATTCCTCCTCAGGTTTGTCCATCTGTGGACCCTTCTGCTTTACCTGCTGGATGAAGCTCCCGGGACCTGCAGGGTAGAGTAGGACCTTGCAAAGCTGCAGAACGTCATGGGGTGGACCCAAGGGAAGGAG-GGCGGGGGCGGAAGACGTCAacatcattctctttt-------cttcacttccCTTATTATCAGCAGACTCTTGGGACACCTGCCTTTTAGCCACAGAGACGGGACTCCAGAAAGGTAAGTAGACACCTGGG-GCCATAGGCTCTGAAGGAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47526530 326 +  50890351 AAATAGAAGACATGATTGGTGCAAAGATACATGCTTATGAGTTCTAGACTGGAATTCCTCCTCAGGTTTGTCCATCTGTGGACCCTTCCGCTTTACCTGCTGGATGAAGCTCCTGGGACCTGCAGGGTAGGGTAGGACCTTGCAAAGCTGCAGAACGTCATGGGGTGGATCCAAGGGAAGGAG-CATGGGGGCAGAAGACGTCAACATCATTCTCTTTT-------CTTCACTTCCCTTATTATCAGCAGACTCTTGGGACACCTGCCTTTTAACCACAGAGACGGGACTCCAGAAAAGTAAGTAGACACCTGGG-GCCATAGGCTCTGAAGGAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45874039 316 +  49145316 aTGTAGAAGACGTGACCGTTGCAAAGACACACACTCATGAGTGCTAGAGTGGACTCCCTCCTCAGGCTTGTCCATCTGCGGACCCTTCCACTGTACCTGCTGGATGAAGCT-CTGGGACCTGCAGGGC-GGGTGGGACCT--------TGCAGAAGGTCATTGGGTATACCCAAGGGAAGGAG-CGCTGGGGTGGAGGAGGCCAACACCATCCCCTTTT-------CTTTACTTCCCTTATTGTTGGCAGACTCTGGGGACACCTACCTTTTATCCACAGAGACGGGGCTCCAGAAAGGTAAGTGGACACCTGGG-GCCGAGGGCTGTAAAGGAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19992098 319 - 122678785 AGATGGAAGACACATCTGGCATGAGGCC---------------CTGGAGCTGAATTCCCCCTTGGGTTTGCCTGCCCTTTGGCTCCTGCTCTCTACCTGCCAGACGAAGCCACTAGGACCTGGAGGTGGGGTGGGGACCTGGAAAAGCTGCAGAAGGTCATGGGGTCCATCCAAGGGGAGGAGAGGCTCCCTCAGCAGAGACCAACACCATCTCTTTTTCTCCCTACTTCACTTCCC-TATCATCCGCAGAACCTTGGGACACCTACTTGTTAGCCACAGAAGCAGAATTCCAGCAAGGTAAGCAAGCAATGGAGTGCTGCACACTGTGAAGGAA
i canFam3.chr1              I 703 I 37

a score=531260.000000
s hg38.chr19_GL949751v2_alt    830619 188 +   1002683 GGGGCTGGGCATAGAGTA--GACCTAGGAAGGGAATCTAAAT---GGGAACAAGAGGGTGTCCTT-----ggccaggcgcagtagctcacacctgtaatctcagccctttgggaggccgaggcgggcagatcatctgaggtcgggagttcaagaccagtctggccaacatggcgaaatcccatctctactaaaaatac
s panTro4.chr19              59832560 188 +  63644993 GGGGCTGGGCATAGAGTA--GACCTAGGAAGGAAATCTAAAT---GGGAACAAGAGGGTGTCCTT-----ggccaggcgcagtagctcacacctgtaatctcagccctttgggaggccaaggcgggcagatcatctgaggtcgggagttcgagaccagtctggccaacatggcgaaatcccatctctactaaaaatac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56745511 196 +  60714840 GGAGCTGGGTATAGAGTA--GACCTAGGAAGGAGATCGGGATGGAGGGAACAAGAGGGTGTCCTTGGCCAggccaggcacagtggctcacacctataatctcagccctttgggaggccgaggcgggcagatcatctgaggtcgggagttcgagaccggtctgaccaacatggcgaaaccccatctctactaaaaataa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103282669 191 - 106955855 GGAGCTGGGCATAGAGTA--GACCTAGGAAGGAGATTGAGATGGAGGGAACAAGAGGGTGTCCTT-----ggccaggcacagtggctcacacctgtaatctcagccctccaggaggccgaggcgggcagatcatctgaggtcgggagttcgagaccggcctggccaacatggcgaaaccccatctctactaaaaatac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60571394 193 +  64156825 GGAGCTGGGCATAGAGTAATGACCTGGGAAGGAGATCGGGATGAACGGAACAAGAGGGTGTCCTT-----ggccaggcgcagtggctcacgcctgtaatcccagccctttgggaggccgaggcgggcagatcatctgaggtcaggagttcgagactggtctggccgatatggcgaaaccccatctctactaaaaatag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55697801 193 +  59248254 GGAGCTGGGCATAGAGTAATGACCTGGGAAGGAGATCGGGATGAACGGAACAAGAGGGTGTCCTT-----ggccaggcgcagtggctcacgcctgtaatcccagccctttgggaggccgaggcgggcagatcatctgaggtcaggagttcgagactggtctggccgatatggcgaaaccccatctctactaaaaatag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47810405 192 +  51301725 GGAGCTGGGCATAGAGTAATGACCTGGGAAGGAGATCGGGATGAACGGAACAAGA-GGCgtcctt-----ggccaggcgcagtggcttacgcctgtcatcccagccctttgggaggccgaggcaggtagatcatctgaggtcaggagtttgagactggtctGGCcgatatggcgaaaccccatctctactaaaaatag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47526856 193 +  50890351 GGAGCTGGGCATAGAGTAATGACCTGGGAAAGAGATCGGGATGAACGGAACAAGAGGGTGTCCTT-----ggccaggtgcagtggctcacgcttgtaatcccagccctttgggaggccaaggcgggcagattatctgaggtcaggagttcgagactggtctggccaatatggcgaaaccccatctctactaaaaatag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45874355 193 +  49145316 GGAGCTGGGTGGAGAGTCCCGAGCAGGGAAGGAGATGGGGATCAGTGAAACAGGAGGGTGTCCTT-----ggccaggtgcggtagcccacgcctgtaatcccagcacactgggaggccaaggcaggcggatcatctgaggtcaggagtttgagaccagcctggccaatgtggggaaaccccatctctagcaaaaatac
i calJac3.chr22             C 0 I 299
e canFam3.chr1               19992417  37 - 122678785 I

a score=418864.000000
s hg38.chr19_GL949751v2_alt    830807 195 +   1002683 aaaaaaattagccaggcgtggtggcgtgtgcctgtagtcccagctacttgggaggctgagacaggagaatagcttgaacccaggaagtggaggttgcagtgagccg-agatcgtgccattgcactccagcctgggcgacaagactgaggctctgtct-caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
s panTro4.chr19              59832748 174 +  63644993 aaaaaaattagccaggcatggtggcgtgtgcctgtagtcccagctacttgggaggctgagacaggagaatagcctgaacccaggaagtggaggttgcagtgagccg-agatcgtaccattgcactccagcctgggcgacaagactgaggctctggct-c---------------------aaaaaaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56745707 183 +  60714840 aaaaaaattagccaggcgtggtggcgtgtgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacccaggaagtggaggtggcagtgagccg-agattatgccattgcactccagcctgggggacaagactgaggctctgttt-c------------aaaaaaaaaaaaaaaaaaaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103282860 164 - 106955855 aaaaaaattagccgggcatggtggcgtgtgcctgt-----------------atgctgaggcaggagaatagcttgaaccca-gaagcggaggttgcagtgagccg-agattgtgccattgcactccagcctgggagacaagactgaggctctgtct-c-------------aaaaaaaaaaaaaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60571587 173 +  64156825 ggaaaaattatccgggcatggtggtgcgtgtctgtagtcccagctacttgggtggctgaggcaggagaatcgcttgaacccgggaagtggaggttgcagtgagccg-agatagtgccactgtactccagcctgggcaacaagactgaggctccgtgtac-----------------------aaaaaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55697994 171 +  59248254 gaaaaaattatccgggcatggtggtgcgtgtctgtagtcccagctacttgggtggctgaggcaggagaatcgcttgaacccgggaagtggaggttgcagtgagccg-agatcgtgccactgtactccagcctgggcaacaagactgaggctccgtgtac-------------------------aaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47810597 171 +  51301725 aaaaaaattatccgggcatggtggtgcgtgcctgtagtcccagctacttgggtggttgaggcaggagaatcgcttgaacccgggaagtggaggttgcagtgagccg-agatcgcgccactgtactccagcctgggcaacaagactgaggctctgtgtac-------------------------aaaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47527049 170 +  50890351 aaaaaaattatccgggcatggtggtgcatgcctgtagtcccagctacttgggtggctgaggcaggagaatcacttgaacccgggaagtggaggttgcagtgagccg-agatcgtgccactgtactccagcctgggcaacaagactgaggctctgtgtac--------------------------gaaaaaaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45874847 154 +  49145316 acaaaaattagccaggtgtggtggcgctcacctgaagtcccagctactcgggaggctgagacgagag-------------------gtggaggttgcagggagctgaagatcgcactgttgtactccagcctgggcaacaagatcaaggctctgtct-c-----------------------aaaaaagaataaaaC
i calJac3.chr22             I 299 C 0
e canFam3.chr1               19992417  37 - 122678785 I

a score=777057.000000
s hg38.chr19_GL949751v2_alt    831002 212 +   1002683 aGAGGGTGTCCTTACATCCCTGTCAGCGATCACCCTGTTCTC---CTGCCTACAGACCATGCCCTCTGGGATCACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTTCTAGTCCTGGTGGCTCTAGTGTGGTTCCTGGTTGAAGACTGGCTCAGCAGGAAGAGGACTAGAGAGCGAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
s panTro4.chr19              59832922 212 +  63644993 aGAGGGTGTCCTTACATCCCTGTCAGCGATCACCCTGTTCTC---CTGCCTACAGACCATGCCCTCTGGGATCACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTTCTAGTCCTGGTGGCTCTAGTGTGGTTCCTGGTTGAAGACTGGCTCAGCAGGAAGAGGACTAGAGAGCGAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56745890 212 +  60714840 aGAGGGTGTCCTTACATCCCTGTCAGCGATCACCCTGTTCTC---CTGCCCACAGACCATGCCCTCTGGGATCACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTCCTGGTCCTGGTGGCTCTAGTATGGTTCCTGGTTGAAGACTGGTTCAGCAGGAGGAGGACTAGAGAGCGAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
i ponAbe2.chr19             C 0 M 1634
s nomLeu3.chr10             103283024 212 - 106955855 aGAGGGTGTCCTTACATCCCTGTCAGCGATCACCCTGTTCTC---CTGCCCACAGACCATGCCCTCTGGGATCACACTGCCCAGAATTTCCTTCGGATGGGCCTGGCCTTCCTGGTCCTGGTGGCTCTAGTGTGGTTCCTGGTTGAAGACTGGCTCGGCAGGAAGAGGACTAGAGAGCGAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60571760 212 +  64156825 aGAGGGTGTCCTTACATCCCTGTCAGCAATCACCCTGTTCTCCTGCTGCCCACAGACCTTGCCCTCTGGG---ACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTCCTAGTCCTGGTGGCTCTAGTGTGTCTCCTGGTTGAAGATTGGCTCAGCAGGAAGAGGACTAGAGAGCAAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55698165 215 +  59248254 aGAGGGTGTCCTTACATCCCTGTCAGCAATCACCCTGTTCTCCTGCTGCCCACAGACCTTGCCCTCTGGGACCACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTCCTAGTCCTGGTGGCTCTAGTGTGTCTCCTGGTTGAAGATTGGCTCAGCAGGAAGAGGACTAGAGAGCAAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47810768 215 +  51301725 agagggtgtcCTTACATCCCTGTCAGCGATCACCCTGTTCTCCTGCTGCCCACAGACCTTGCCCTCTGGGACCACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTCCTGGTCCTGGTGGCTCTAGTGTGTCTCCTGGTTGAAGATTGGCTCAGCAGGAAGAGGACTAGAGAGCAAGCCAGCAGAGCTTCCACCTGGGAAGGCAGGAGAAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47527219 215 +  50890351 aGAGCGTGTCCTTACATCCCTGTCAGCGATCACCCTGTTCTCCTGCTGCCCACAGACCTTGCCCTCTGGGACCACACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTCCTGGTCCTGGTGGCTCTAGTGTGTCTCCTGGTTGAAGACTGGCTCAGCAGGAAGAGGACTAGAGAGCAAGCCAGCAGAGCTTCCACTTGGGAAGGCAGGAGAAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45875001 212 +  49145316 AGAGGGTGTCCTTGGGTCCCTGTCAGCAATCACCCTGTTCTC---CTGCCCACAGAGCTTGCCCTCTGGGACCACACTGCCCAGAATCTCCTTCGGGTGGGCCTGGCCTTCCTGGTCCTGGTGGCTCTGGTGTGGCTCCTGGTTGAAGACTGGCTCAGCAGGAAGAGGACCAGAGGGCGAGCCAGCAGAACTTCCACTGGGCAATGCAGGAGAAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19992454 212 - 122678785 AGGTGGTGCCTGGCTATTCCTGTCAGTAATCAGTCTGTTCTT---CTCACCCCAGCCCCTGCCTTCTGGGATCACACTGCCCATAATATCCTTCAGATTGGTCTGGCTTTCCTGGTCCTGATGGCCCTCATGTGCCTCCTGGTTGATTACTGGCTTTGCAGGAAGAGGATACAAGAGCAAGCCAACAGGGCTTCACCTCAGGAATGCAGGAGAAG
i canFam3.chr1              I 37 C 0

a score=255064.000000
s hg38.chr19_GL949751v2_alt    831214 111 +   1002683 GCTG----AACACACAGACTCTTTGAA-GAATGACCATGAGACACAGTGGCCATGGGTGGATCTGAAAGCTGGTGTTGAGCCTGGGCGGCGTGAGCTCTGTGTTGGACCCACGGAG
s panTro4.chr19              59833134 111 +  63644993 GCTG----AACACAAAGACTCTTTGAA-GAATGACCGTGAGACACAGTGGCCGTGGGTGGATCTGAAAGCTGGTGTTGAGCCTGGGCCGCGTGAGCTCTGTGTTGGACCCACGGAG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103283236 109 - 106955855 GCCA----AATACAAAGACTC--TGAA-GAATGACCATGAGACACAGTGGCCATGGGTGGAACTGAAAGCTGGTGTTGAGCCTGGGCGGCGTGAGCGCTGTGTTGGACCCATGGAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60571972 113 +  64156825 GTTGAACAAACACAAAGACTC--TGAA-GAATGACCATGAGACGCAGTGGCCATGGGTGGAACTGAAAGCTGGTGTTGAGCCTCGGTGGCGTGAGCTCTGTGTCAGACCCACGGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55698380 113 +  59248254 GTTGAACAAACACAAAGACTC--TGAA-GAATGACCATGAGACGCAGTGGCCATGGGTGGAACTGAAAGCTGGTGTTGAGCCTCGGTGGCGTGAGCTCTGTGTCAGACCCACGGAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47810983 115 +  51301725 GTTGAACAAACACAAAGACTCTTTGAA-AAATGACCATGAGACGCAGTGGCCATGGGTGGAACTGAAAGCTGGTGTTGAGCCTGGGTGGCGTGAGCTCTGTGTCAGACCCGTGgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47527434 111 +  50890351 GTTG----AACACAAAGACTCTTTGAA-GAATGACCACGAGACGCAGTGGCCATGGGTGGAACTGAAAGCTGGTGTTGAGCCTGGGTGGCATGAGCTCTGTGTCAGACCCACGGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45875213  95 +  49145316 CTTG----AACACAAAGACTCTCTGAA-GAACGCCCGAGAGATGCGGCAGCCGTGGGTGGAACTGAAAGCCGGTGTTGAGC----------------CTGTGTTGAACCCACAGAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               19992666 112 - 122678785 GTTCAG--AACACAGAGAACCCCTGGACAAATGACCAAGAGATGTGCTGGCCACAGTTAGAGCTGAACACTGGCATTGACCTTGGGCTGTGTGAG--CTGTGTTGCACCCATGGAG
i canFam3.chr1              C 0 I 4
e ponAbe2.chr19              56746102 1634 +  60714840 M

a score=1158352.000000
s hg38.chr19_GL949751v2_alt    831325 530 +   1002683 GAGGGAGTCACTGCAGGGA-------AAGAGGGACACTGGCATTCCATTTGTCAGAGCATCCCGGACGATGCAGAGGGTGGGAGAACTACATGCTAAAtttc----------tttt----tttttttttttgagacagagtttt-ctcttgttgcccaggctggagtgcaatggcgcgatcttggctcactgcaacctctagctctccatccctcgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccac-cccagctaa--ttttgtatttttagtggagacggggtttctccctgtt-----ggctggtctcgaactcctgacctcaagtgat-ctccccgccttggcctcccaaagggctgggattacaggcataagccgctgcgcccagccACTGAATTTCTTCTGTAGACAAATCCTATGGTCTCTTCTAGGCTCTAACTATTTTTGTACCACTTACTGCAAACCATACTTTTAACCACTCTGGTCTTTTCTGAAAAGATCTCTCCTTCTTTAACAGGATGGCCATG
s panTro4.chr19              59833245 527 +  63644993 GAGGGAGTCACTGCAGGGA-------ACGAGGGACACTGGCATTCCATTTGTCAGAGCATCCCGGACGATGCAGAGGGTGGGAGAACTACATGCTAAAtttc-------------t----tttttttttttgagacagagtttt-ctcttgttgcccaggctggagtgcaatggcgcgatcttggctcactgcaacctctacctctccatccctcgggttcaagtgattctcctgcctcagcctcctgagtagctggaattacaggcatgcgccaccac-cccagctaa--ttttgtatttttagtggagacggggtttctccctgct-----ggctggtctcgaactcctgacctcaagtgat-ctccccgccttggcctcccaaagggctgggattacaggcataagccgctgcgcccagccACTGAATTTCTTCTGTAGACAAATCCTATGGTCTCTTCTAGGCTCTAACTATTTTTGTGCCACTTACTGCAAACCATACTTTTAACCACTCTGGTCTTTTCTGAAAAGATCTCTCCTTCTTTAACAGGAGGGCCATG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103283345 540 - 106955855 GAGGGAGTCACTGCAGGGA-------ACAAGGGACACTGGCATGCCATTTGTCAGAGCTTCCCAGACAATGCAGAGGGTGGGAGAACTACATGCTAAAtttcttgttt-ttttttt----tttttttttttgagacagagttttgctcttgttgcccaggctggagtgcaatggcgcgatcttggctcactgcaacctctacctctccatccctggggttcaagcgattctcctgactcagccccccgagtagctgggataacaggcatgcgccaccac-ctcggctaa--ttttgtatttttagcagagacggggtttctccctgtt-----ggctgttctcgaactcctgacctcaagtgat-ctccccgcctcggcctcccaaagggctgggattacaggcatgagctgccacgtgcagccACTGAATTTCTTCTGTAGACACATCCTACAGTCTCTTCTAGGCTCTAACTATTTTTGTGCCACTTACGGCAAACCATACTTTTAAGCACTCTGTTCTTTTCTGAAAAGCTCTCTCCTTCTTTAACAGGATGGCCACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60572085 554 +  64156825 GAGGGAGTCACTGCAGGGAACAGGGGACAGGGGACACTGGCATTCCATTTGTCAGAGCATCCCGGACGACGCAGAGGGTGGGAGAACTACATGCTAAGtttctttctggttttttt----tttttttttttgagacagagttttgctcttgttgcccaggctggagtgcaatggcgtgattttggctcactgcaacctctacctctccatcccttgggctcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgcctggctaa--ttttgtatttttagtagagacggggtttctccctgttggtcaggctggtcttgaactcctgatctcaagagat-ccccccgcctcggcctcccaaagggctgggattacaggcatgagctgccacgcccagccGCTGAATTTCTTTTGTAGACAAATCCTATGGTCTCTTCTAGGCTCTAAGTACTTTTGTGCCACTTACTGCAAACCATACTTTTAAGCACTCTGGTCTTTTCTGAAAAGATCTCTTCTTCTTTAACAGGATGGCCATG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55698493 554 +  59248254 GAGGGAGTCACTGCAGGGAACAGGGGACAGGGGACACTGGCATTCCATTTGTCAGAGCATCCCGGACGACGCAGAGGGTGGGAGAACTACATGCTAAGtttctttctggttttttt----gttttttttttgagacagagttttgctcttgttgcccaggctggagtgcaatggtgtgattttggctcactgcaacctctacctctccatcccttgggctcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgcctggctaa--ttttgtatttttagtagagacggggtttctccctgttggtcaggctggtcttgaactcctgatctcaagagat-ccccccgcctcggcctcccaaagggctgggattacaggcatgagctgccgcgcccagccGCTGAATTTCTTTTGTAGACAAATCCTATGGTCTCTTCTAGGCTCTAAGTACTTTTGTGCCACTTACTGCAAACCATACTTTTAAGCACTCTGGTCTTTTCTGAAAAGATCTCTTCTTCTTTAACAGGATGGCCATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811098 551 +  51301725 gaggaagtcactgcagggA-------ACAGGGGACACTGGCATTCCATTTGTCAGAGCATCCCGGACGACGCAGAGGGTGGGAGAACTACATGctaaatttctttctggttttttttttctttttttttttgagacagagttttgctcttgttgcccaggctggagtgcaatggcatgattttggctcactgcaacctctacctctccatcccttgggctcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgcctggctaa--ttttgtatttttagtagagacggggtttctccctgttggtcaggttggtcttgaactcctgatctcaagagat-ccccccgcctcggcctcccaaagggctgggattacaggcatgagctgccgcgccCGGCCGCTGAATTTCTTTTGTGGACAAATCCTATGGTCTCTTCTAGGCTCTAAGTATTTTTGTGCCACTTACTGCAAACCATACTTTTAACCACTCTGGGCTTTTCTGAAAAGATCTCTTCTTCTTTAACAGGATGgccatg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47527545 532 +  50890351 GAGGGAGTCACTGCAGGGA-------ACAGGGGACACTGGCATTCCGTTTGTCAGAGCATCCTGGACGATGCAGAGGGTGGGAGAACTACATGCTAAAtttctgtttg------------tttttttttttgagacagagttttgctcttgttgcccaggctggagtgca-----gtgattttggctcactgcaacctctacctctccatcccttgggctcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgcctggctaa--ttttgtatttttagtagagacgaggtttctccctgttggtcaggttggtcttgaactcctgatctcaagagatcccccccgcctcggcctcccaaagggctgggattacaggcatgagctgccgcgcccagccGCTGAATTTCTTTTGTAGACAAGTCCTATGGTCTCTTCTAGGTTCTAAGTATTTTTGTGCCACTTACTGCAAACCATACTTTTAACCACTCTGGTCTTTTCTGAAAAGATC---TCTTCTTTAACAGGATGGCCATG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45875308 524 +  49145316 GAGGGAGTCACTGCAGGAA-------ACAAGGGACAATGCCATTCCATTTGTCAGACCATCCCAGATGACACAGGAGGTGGGAGAA--ACAAGCTAAATTTCTTCGTA------------Atttttttcctgaggcagagtctggctc-tgtcatccaggctggagtgcagtggcgctatctcagctcactgaaacctccgcctccc--------aggttcgagtgattctcctgcctcagcctcctgagtagctgggattacatgtacgcaccaccacacctagctaattttttgtatttttaatagagacggggtttcaccgcactagccaggatggtctcgatctcccgacctca--tgat-----ccgcctcggcctcacaaagtgctgggattacaggcgtgagccaccacccctggccACTAAATTTCTTTTGTAGACAAATCCTATGGTCTCTTCTAGGCTCTAAGTATGTTTGTGCAACTTACTGCAAACCATACTTTTAACAGCTCTAGTCTTTTCTGAAAAGACCTCTCCTTCTCTAATAGAACGGCCTTG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               19992778   4 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M

a score=170769.000000
s hg38.chr19_GL949751v2_alt    831855 75 +   1002683 GAAATA--TTTTTTTCCTACTTTGGTCTT---------TTTTTCTTTCCTTTCTCTGCA-GGAAGCCATTCAAAATAGTTAATAACC
s panTro4.chr19              59833772 75 +  63644993 GAAATA--TTTTTTTCCTACTTTGGTCTT---------TTTTTCTTTCCTTTCTCTGCA-GGAAGCCATTCAAAATAGTTAATAACC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103283885 76 - 106955855 GAAATA--TTTTTTTCCTACTTTGGTCTT---------TTTTTCTTTCCTTTCTCTGCAGGGAAGCCATTCAAAATAGTTAATAACC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60572639 73 +  64156825 GAAATATTTTTTTTTTCTACTTTGGTC-------------TTTCTTCCCTTTCTCTGCA-GGAAGCCATTCAAAATAGTTAATGACC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55699047 73 +  59248254 GAAATATTTTTTTTTTCTACTTTGGTC-------------TTTCTTCCCTTTCTCTGCA-GGAAGCCATTCAAAATAGTTAATGACC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811649 73 +  51301725 gaaatattttttttttctactttggtc-------------tttcttccctttctctgca-ggAAGCCATTCAAAATAGTTAATGACC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528077 72 +  50890351 GAAATA-TTTTTTTTTCTACTTTGGTC-------------TTTCTTTCCTTTCTCTGCA-GGAAGCCATTCAAAATAGTTAATGACC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45875832 75 +  49145316 GAAATA--TTTTCTTCCTACTCTGGGCCT---------TATTTCTTCCCTTTCTCTGCA-GGGAAGCATTCaaaatagttaataacc
i calJac3.chr22             C 0 I 160
s canFam3.chr1               19992782 83 - 122678785 GGAACA--TTTCCTTCCTAGTTTGGTCTTTGTCTCTAGTTCTTCTTTCCTTT-GCTGCA-ATATATCATTCAAGATATTTAACAACT
i canFam3.chr1              I 4 C 0
e ponAbe2.chr19              56746102 1634 +  60714840 M

a score=103809.000000
s hg38.chr19_GL949751v2_alt    831930 38 +   1002683 AATATAGAATAGGTCTGTATCAAATGGTTCAGGAGGCA
s panTro4.chr19              59833847 38 +  63644993 AATATAGAATAGGTCTGTATCAAATGGTTCAGGAGGCA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103283961 38 - 106955855 AATATAGAATAGGTCTATACCAAATGGTTCAGGAGGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60572712 38 +  64156825 AATATAGAATAGGTTTGTATCGAATGGTTCAGGAGGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55699120 38 +  59248254 AATATAGAATAGGTTTGTATCGAATGGTTCAGGAGGCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811722 38 +  51301725 AATATAGAATAGGTCTGTATCGAATGGTTCAGGAGGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528149 38 +  50890351 AATATAGAATAGGTCTGTATCGAATGGTTCAGGAGGCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45876067 38 +  49145316 AATATAGAATAGGTCTGAATCAAATGGTTCAGGAGGCA
i calJac3.chr22             I 160 C 0
s canFam3.chr1               19992865 38 - 122678785 AGTACAGAATAGGCATTTATCAAGGGGAACATGAGCCA
i canFam3.chr1              C 0 I 79
e ponAbe2.chr19              56746102 1634 +  60714840 M

a score=437001.000000
s hg38.chr19_GL949751v2_alt    831968 199 +   1002683 TTGTGGCAACAACCAGTTGTAGAGAAGCAGCTTTATAAGTGAATCCTgccaggcacggtggctcacacctgtaatcccaacactttgggaggctgaggcgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaaCTCggccaggcacggtggct
s panTro4.chr19              59833885 199 +  63644993 TTGTGGCAACAACCAGTTGTAGAGAAGCAGCTTTATAAGTGAATCCTgccaggcacggtggctcacacctgtaatcccaacactttgggaggctgaggcgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattCggccaggcacggtggct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103283999 192 - 106955855 TTGTGGCAACAACCAGTCATAGAGAAGCACC-------GTGAATCCTgccgggcacggtggctcacacctgtaatcccaacactttgggaggctaaggcaggcagatcacctgaggtcaggagttcgagaccagccttgccaacacaattaaaccccatctctactaaaaatacaataattCAgccaggcacggtggct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60572750 198 +  64156825 TTGTGGCAACAGCCAGTCATAGAGAAGCAGCTTTATAAGTGAATCCTgccgggggcggtggctcatgcccataatcccaacactttgggagactgaggtgggcagatcacctgaggtaaggagttcgagaccagcctggccaacacgatgaacccttatctctactaaaaatacaaaaatt-agccaggtatggtggtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55699158 198 +  59248254 TTGTGGCAACAGCCAGTCATAGAGAAGCAGCTTTATAAGTGAATCCTgccgggggcggtggctcatgcccataatcccaacactttgggagactgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacacgatgaacccttatctctactaaaaatacaaaaatt-agccaggtatggtggcg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811760 198 +  51301725 TTGTGGCAACAGCCAGTCATAGAGAAGCAGCTTTATAAGTGAATCCTGCCGGGGGCGGTGgcttatgcccataatcccaacactttgggagactgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacacgatgaacccttatctctactaaaaatacaaaaatt-agccaggtgtggtggtg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528187 198 +  50890351 TTGTGGCAACAACCAGTCGTAGAGAAATAGCTTTGTAAGTGAATCCTgccgggggcggtggctcatgcccataatcccaacactttgggagactgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacacgatgaacccttatctctactaaaaatacaaaaatt-agccaggtatggtggca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45876105 199 +  49145316 TCGCGGCCACAACCAGTCACAGAGAAGCAGCTTTGTAAGTGAATCCTgctgggcgcggtgactcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattcagcccgacacagtggTT
i calJac3.chr22             C 0 I 2755
e canFam3.chr1               19992903  79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M

a score=31152.000000
s hg38.chr19_GL949751v2_alt    832167 17 +   1002683 catgcctgtaatcccag
s panTro4.chr19              59834084 17 +  63644993 catgcctgtaatcccag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284191 17 - 106955855 catgcctgtaatcccag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60572948 17 +  64156825 tgtgcctgtaatcccag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55699356 17 +  59248254 tgtgcctgtaatcccag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811958 17 +  51301725 tgtgcctgtaatcccag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528385 17 +  50890351 tgtgcctgtaatcccag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19992903 79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I

a score=430.000000
s hg38.chr19_GL949751v2_alt    832184 1 +   1002683 c
s panTro4.chr19              59834101 1 +  63644993 c
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284208 1 - 106955855 a
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60572965 1 +  64156825 c
i rheMac3.chr19             C 0 I 422
s macFas5.chr19              55699373 1 +  59248254 c
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811975 1 +  51301725 c
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19992903 79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I
e chlSab2.chr6               47528402 0 +  50890351 C

a score=51456.000000
s hg38.chr19_GL949751v2_alt    832185 134 +   1002683 actttgggaggccaaggtgggaggatcacctgaggtcaggagttcgaga-------------------------------gcagcctggccaacatggtgaaaccacatctc-------------tactaaaaatataaaaattagccaggtatg--gtggcgtgtgcttgtaatcccag
s panTro4.chr19              59834102 106 +  63644993 actttgggaggccaaggtgggaggatcacctgaggtcaggagttcgaga-------------------------------gcagcctggtcaacatggtgaaaccacatctc-------------tactaaaaatacaaaaattag------------------------------ccag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284209 133 - 106955855 actttgggaggccaaggcgggaggatcacctgaggtcaggagttcaaga-------------------------------ccagcctggccaacacaatgaaaccccatctc-------------tactaaaaatacaacaattagccaggtatg--gtggcgtgtgcttgtgtc-ccag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55699374 180 +  59248254 tacttaggaggctgaggcaggagaatagcttgaacccgcgaggcagaggctgcagtgagccaagatcgcaccactgcactccagcctgggtgatagagcaagactctgtctcaaaaaataaataaaaatacaaatacaaaaattagccaggcatgatgtgggacttgtctgtgatctcag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47811976 177 +  51301725 tacttgggaggctgaggc---agaatagcttgaacccgcgaggcagaggctgcagtgagccaagatcgtaccactgcactccagcctgggtgatagagcaagactctgtctcaaaaaataaatacaaatacaaatacaaaaattagccaggcatgatgtgggacatgtctgtgatcccag
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19992903  79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I
e chlSab2.chr6               47528402   0 +  50890351 C
e rheMac3.chr19              60572966 422 +  64156825 I

a score=53428.000000
s hg38.chr19_GL949751v2_alt    832319 49 +   1002683 ctactcaggaggctgaggcaggagaatagcttgaacccgggaggcggag
s panTro4.chr19              59834208 49 +  63644993 ctactcaggaggctgaggcaggagaatagcttgaacccgggaggcggag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284342 47 - 106955855 ctact-aggaggctgaggcaggagaatagcttgaacccaggaggcaga-
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55699554 49 +  59248254 ctactcaggaggctgaggcaggagaatcacttaaacccagaaagcagat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47812153 49 +  51301725 ctactcaggaggctgaggcaggagaatcacttgaacccagaaagcagat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528402 49 +  50890351 ctactcgtgagactgaggcaggagaatcacttgaacccagaaagcagac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19992903 79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I
e rheMac3.chr19              60572966 422 +  64156825 I

a score=204147.000000
s hg38.chr19_GL949751v2_alt    832368 133 +   1002683 gctgcagggagccaagatcgcaccactgcactccagcctacgtgacagagcaagattctgtctcaaaaaaaaaaagaaaaaaaaaa---aaTA--AGTGACTCCTGGCTGCATCCCAACCATACCCCAATTCCTTCTA
s panTro4.chr19              59834257 129 +  63644993 gctgcagggagccaagatcgcaccactgcactccagcctatgtgacagagcaagattctgtctcaaaaaagaaaag----aaaaaa---aata--aaTGAGTCCTGGCTGCATCCCAACCATACCCCAATTCCTTCTA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284389 129 - 106955855 gctgcagggagccaagatcgcaccactgcactccaacctgggtgacagagcaagactctgtctcaaaaaaaagaaa----ataaaa---aaaa--aGTGAGTCCTGGCTGCATCCCAACCATACCCCAATTCTTCCTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60573388 129 +  64156825 gctgcagtgagccgagatcacaccactgcactccatcctgggtgatagagcaaga--ctgtctcaaaaaaaataaa----agaaaa---aataataaTGAGTCCTGGCTACATCCCAACCACGCCCCAATTCCTCCTA
i rheMac3.chr19             I 422 I 1283
s macFas5.chr19              55699603 129 +  59248254 gctgcagtgagccgagatcacaccactgcactccatcctgggtgatagagcaaga--ctgtctcaaaaaaaagaaa----agaaaa---aataataaTGAGTCCTGGCTGCATCCCAACGACGCCCCAATTTCTCCTA
i macFas5.chr19             C 0 I 9
s papAnu2.chr19              47812202 129 +  51301725 gctgcagtgagccgagatcacaccactgcactccagcctgggtgatagagcaaga--ctgtctcaaaaaaaagaaa----agaaaa---aataataatgagtcCTGGCTGCATCCCAACGACGCCCCAATTCCTCCTA
i papAnu2.chr19             C 0 I 9
s chlSab2.chr6               47528451 134 +  50890351 actgcagtgagccgagatcacaccactgcactccatcctgggtgatagagcaagactctgtctcaaaaaaaagaaa----gaaaaaaGTAATAATAATGAGTCCTGGCTGCATCCCAACCACGCCCCAATTCCTCCTA
i chlSab2.chr6              C 0 I 56
e canFam3.chr1               19992903  79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I

a score=33908.000000
s hg38.chr19_GL949751v2_alt    832501 70 +   1002683 ACCACAGAATTATTCCATCTTCTCTTCCtttttttt---------ttttttctttttttttgtttgttttgttGGGACA
s panTro4.chr19              59834386 79 +  63644993 ACCACAGAATTATTCCATCTTCTCTTCCttttttttttttttttcttttttttttttttttgtttattttGTTGGGACA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284518 57 - 106955855 ACCACAGA---ATTCCATCTTCTCTTCCtttttttt-------------------ttttttgtttgttttgttGGGACA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55699741 57 +  59248254 ACCACAGA---ATTCCATCTTCTTtttgttttttgt-------------------ttttgtttttgttttgttgggacg
i macFas5.chr19             I 9 C 0
s papAnu2.chr19              47812340 49 +  51301725 ACCACAGA---ATTccatcttc--------ttttgt-------------------ttttgtttttgttttgttgggacG
i papAnu2.chr19             I 9 C 0
e canFam3.chr1               19992903 79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I
e chlSab2.chr6               47528585 56 +  50890351 I
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=40217.000000
s hg38.chr19_GL949751v2_alt    832571 155 +   1002683 GAATTTCACtttttttttttttaatgtaagttttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtgccatgttggtgtgctgcacccactaactcgtcatttaacattaggtatatctcctaatgctatcccttccccc
s panTro4.chr19              59834465 155 +  63644993 GAATTTCACtttttttttttttaatgtaagttttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtgccatgttggtgtgctgcacccactaactcgtcatttaacattaggtatatctcctaatgctatccctcccccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284575 154 - 106955855 GAATTTCAC-ttttttttttttaacataagttttagggtacatgtgcacaacgtacaggttagttacataagtatatatgtgccatgttggtgtgctgcacccactaactcctcatttaacattaggtgtatcttctaatgctatccctcccccc
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19992903  79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I
e chlSab2.chr6               47528585  56 +  50890351 I
e papAnu2.chr19              47812389   0 +  51301725 C
e macFas5.chr19              55699798   0 +  59248254 C
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=147890.000000
s hg38.chr19_GL949751v2_alt    832726 118 +   1002683 gagtttcacttttgtcacccaggctggaatgcagtggtgcaatcttggctcactgccacctccacctccagggttcaaatgattctcctgcctcagcctcctgaatagctgggattat
s panTro4.chr19              59834620 118 +  63644993 gagtttcacttttgtcacccaggctggaatgcagtggtgcaatcttggctcactgccacctccacctccagggttcaaatgattctcctgcctcagcctcctgaatagctgggattat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103284729 118 - 106955855 gagtttcacttttgtcactcagggtggaatgcagtggtgcagtcttggctcactgccacctccacctccagggttctagtgattctcctgcctcagcctcctgaatagctgggattac
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55699798 118 +  59248254 gaggttcactgttgttgcccaggatggagtgcagtggcgcgatctcagctcactgccacctccacctccagggttcaagcgattctcctgcctcagcctcctgaatagctgggactac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47812389 118 +  51301725 GAggttcactgttgttgcccaggatggagtgcagtggcgcgatctcagctcactgccacctccacctccagggttcaagcgattctcctgcctcagcctcctgaatagctgggactac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528641 118 +  50890351 gagtttcactgttgttgcccaggatggagtgcagtggcgcgatctcagctcactgccacctccacctccagggttcaagggattcgcctgcctcagcctcctgaatagctgggactac
i chlSab2.chr6              I 56 C 0
e canFam3.chr1               19992903  79 - 122678785 I
e ponAbe2.chr19              56746102 1634 +  60714840 M
e calJac3.chr22              45876304 2755 +  49145316 I
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=992123.000000
s hg38.chr19_GL949751v2_alt    832844 599 +   1002683 aggcatgcaccaccacgcccggctaatttttgtatttttagtagaaat-ggggtttcacaatgttggccagactggtcttgaactcctgacctcaggtgatccaccagcctcggcctcccaaagtgctggaattacaggtgtgagtcaccgtacccggccACCATCTTTGCTTCTTTATCCACACCTTGCcttgttcttcagggctctgcagagatatcatttcctcca--ag---------agtttccacaactccgactt--cacaaagatagcac--------ttttttttt---------tttttttgagac--agtctcactctgtagcccaagctggcgtgcagtggcacaatctcagctcactgcaaccttcgcctctggggctcaagcgattctccttcctcagcctcccaagtagctgggactagaggcgcgcgccaccacacccggttaa-ttttttttgcatctttagtagaggtagggtttcatcatgttgccctgggtggtctcaaactcctgagttcaggtgatccccccgccttggcctctcaaagtgctaggattacaggcgtgagccactgcgcccagccaagacaacactttcctcatcccaaagcacctgttaa
s panTro4.chr19              59834738 607 +  63644993 aggcatgcaccaccacgcccggctaatttttgtatttttagtagaaat-ggggtttcacaatgttggccagactggtcttgaactcctgacctcaggtgatccaccagcctcggcctcccaaagtgctggaattacaggtgtgagtcaccgtacccggccACCATCTTTGCTTCTTTATCCACACCTTGCcttgttcttcagggctctgcagagatatcatttcctcca--ag---------agtttccacaactccgactt--cacaaaggtagcacttttttttttttttttt---------tttttttgagac--agtctcactctgtagcccaagctggcgtgcagtggcacaatctcagctcactgcaaccttcgcctctggggctcaagcgattctccttcctcagcctcccaagtagctgggactagaggcacgtgccaccacacccggttaa-ttttttttgcatctttagtagagatagggtttcgtcgtgttgccctgggtggtctcaaactcctgagttctggtgatccccccgccttggcctctcagagtgctaggattacaggcgtgagccactgcgcccagccaagacaacactttcctcatcccaaagcacctgttaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56747736 601 +  60714840 aggcatgcaccaccatgcccagctgatttttgtatttttagtagaaatgggggtttcacaatgttggccagactggtcttgaactcctgacctcaggtgatccaccagcctcagcctcccaaagtgctgggattacaggtgtgagtcaccgcgcccggACACCAtcttcgcttctttatccataccttgccttgttcttcagggctctgcagagatatcatttcctccaagag---------agtttccacaactccaactt--cacaaaaatagctc-------tttttttttt---------tttttttgagacagagtctcactctgtagcccaagctggagtgcagtggcgcaatctcagctcactgcaaccttcacctctggggctcaagcgattctccttcctcagcctcccaagtagctgggactagaggcacgcgccaccacacccggttcatttttttttgcatttttagtagagatggggtttcatcatgttgccctgggtggtctcaaactcctgagctcaggtgatccccccaccttggcctcccaaagtgctgggatcacaggcgtgagccactgc-----gccaagacaacacttttctcatcccaaagcacctgttaa
i ponAbe2.chr19             M 1634 C 0
s nomLeu3.chr10             103284847 600 - 106955855 aggcatgcaccaccacgcccggctaatttttgtatttttagtagaaat-ggggtttcacaatgttggccagactggtcttgaactcctgacctcaggtgatccaccagcctcggcctcccaaagtgctgggattacaggtgtgagtcaccgtgcccggccACCAtcttctcctctttatccgcaccttgccttgttcttcagggctctgcagaggtatcatttcctccaagag---------agcttccacagctctgactt--cacgaagacagcac-----------gttttt---------tttttctgagacagagtctcactctgtagcccaagctggagtgcagtggcgcaatctcagctcactgcaaccttcgcctctggggctccagcgactctccttcctcagcctcccaagtagctgggactagaggcacgcgccaccacacccggttaa-ttttttttgcatttttagtagagatggggtttcatcatgttgccctgggtggtctcaaactcctgagctcaggtgatccccccgccttggcctcctaacgtgctgggattacaggcatgagccaccaggcctggccaagacaacacttttctcatcccagagcacctgttaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55699916 601 +  59248254 aggcatgcaccaccacgcctggttaatttttgtatttttagtagaaat-ggggtttcgtcatgttggccaggctggtctcgaactcctgacttcaggtgatccaccagcctcggcctcccaaagtgctggaattacaggtgggagccaccacgcctggccACCGTTCTCTCTTCTTTATCCATACCTTGCCTTGTTCTTCAGGGCTCTGCGTAGGTACCATTTCCTCCAAGAG--------TTATGGAAATAACTCTGACTTCACACAAAGACAGCAC---------tttttttt-----gttgtttttttgagacggagtctcactgtgtagcccaagctggagtgcagtggttcagtctcagctcactgcaaccttcgcctctggggctcaagcgattctctttgctcagcctcccaagtagctgggactagaggcacgcgccaccacacc--gttaa-ttttttgtgtgtttttagaagagatggggtt---tcatgttgccctgggtggtcttgaactcctgagctcaggtgatcgccctgccttgacctcccaaagtgctgggattacaggtgtgagccaccatgcctggccAAG---ACACTTTTCTCATCCCAAAGCACCTGCTAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47812507 601 +  51301725 aggcatgcaccaccacgcctggttaatttttgtatttttagtagaaat-ggggtttcgtcacgttggccaggctggtctcgaactcctgacttcaggtgatccaccagcgtcggcctcccaaagtgctggaattacaggtgtgagccaccacgcctggccaccgTTCTCTCTTCTTTATCCATACTTTGCCTTGTTCTTCAGGGCTCTGCGTAGATACCATTTCCTCCAAGAG---------AGTTTCCATAACTCTGACTTCACACAAAGAcagcac---------ttttttgt---------tttttttgagacggagtctcactgtgtagcccaagctggagtgcagtggttcaatcttagctcactgcaaccttcgcctctggggctcaagcgattctctttgctcagcctcccaagtagctgggactagaggcacgcgccaccatacccagttaa-ttttttgtgtgtttttagaagagatggggtttcatcatgttgccctgggtggtcttgaactcctgagctcaggtgatcgccctgccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcctggccaag---acacTTTTCTCATCCCAAAGCACCTGCTAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47528759 619 +  50890351 aggcatgcaccaccacgcctggttaatttttgtatttttagtagaaat-ggggtttcgtcatgttggccaggctggtcttgaactcctgacttcaggtgatccaccagcctcggcctcccaaagtgcgggaattacaggtgtgagccaccgcgcctggccACCGTTCTCTCTCCTTTATCCATACCTTGCCCTGTTCTTCAGGGCTCTGCATAGATACCATTTCCTCCAAGGGAGATACCATTTCCTCCATAACTCTGACTTCACACAAAGACAGCAC---------ttttttttgttttgttttttttttgagacagagtctcactgtgtagcccaagctggagtgcagtggttcaatctcagctcactgcaaccttcgcctctggggctcaagcgattctctttcctcagcctcccaagtagctgggactagaggcacgcgccaccacactcagttaa-ttttttgtgtgtttttagaagagattgggtttcatcatgttgccctgggtggtcttgaactcctgaggtcaggtgatcgccctgccttggcctcccaaagtgctgggattacaggtgtaagccaccatgcctggccAAG---ACACTTTCCTCATCCCAGAGCACCTGCTAA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19992903  79 - 122678785 I
e calJac3.chr22              45876304 2755 +  49145316 I
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=375173.000000
s hg38.chr19_GL949751v2_alt    833443 185 +   1002683 ttccctgtaacagcacttgaaccctgattcggcatgcatgtccattttcctgcctctaccgtgaactcgtgtgaattga-tctatgtcagatttagtggctgcattcacagctcccgcaactataacggggttctcgggaaatatatatcaaatgagtgaatGTATATAC-GGGGCTGTGGCACAGC
s panTro4.chr19              59835345 185 +  63644993 ttccctgtaacagcacttgaaccctgattcggcatgcatgtccattttcctgcctctaccgtgaactcgtgtgaattga-tctatgtcagatttagtggctgcattcacagctcccgcaactataatggggttctcgggaaatatatatcaaattagtgaatGTATATAC-GGGGCTGTGGCACAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56748337 185 +  60714840 ttccctgtaacagcacttgaaccctgatttggcatgcacgtccatcttcctgcctgtactgtgagctcctgtgacttga-tctatgtcagatttagtggctgcgttcacagctcccgcaactataacagggttctcgggaaatatatatcaaatgagtgaatGTATATAT-GGGGCTGTGGCACAGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103285447 181 - 106955855 ttccctgtaacagcacttgaaccctgattcg----gcacatccattttcctgcctctactgtgaactcgtgtgaattga-tctatgtcagatctagtggctgcgttcacagctcccgcaactataacagggttctcgggaaatacatatcaaatgagtgaatGTATATAC-GGGGCTGTGGCACAGC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55700517 186 +  59248254 TTCCTTGTAACAGCACCTGAACCCTGATTCGGCATGCATGTCCATTTTCCTGTCTCCGCCGTGAACGCGTGTGAATTGA-TCTATGTCAGATTTAGTGGCTGCGTTCACAGCTCCGGCAACTCTAAAGGGGTTCTCAGGAAATATATGTCAAATGAAGGAATGTATATACGGGGGCTGTGGCACAGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47813108 186 +  51301725 TTCCTTGTAACAGCACCTGAACCCTGATTCGGCATGCATGTCCATTTTCCTGTCTCCGCCGTGAACTCGTGTGAACTGA-TCTATGTCAGATTTAGTGGCTGCGTTCACAGCTCCGGCAACTCTAAAGGGGTTCTCAGGAAATATATGTCAAATGAAGGAATGTATATACGGGGGCTGTGGCACAGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47529378 186 +  50890351 TTCCTTGTAACAGCACCTGAACCCTGATTCGGCATGCATGTCCATTTTCCTGTCCCCGCTGTGAACTCATGTGAATTGA-TCTATGTCAGATTTAGTGGCTGCGTTCACAGCTCTGGCAACTCTAAAGGGGTTCTCAGGAAATATATGTCAAATGAAGGAATGTATATACGGGGGCTGTGGCACAGC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19992982 184 - 122678785 TCCCCTATAACAGCACAGGGGCTCTAACACTGCATACATATCCATTTTCCTGACTCTACAGTGAACTTGTGTGAATTTAGCCCATGTGGTGTCTGGTGGCTGTGCTCACAGCTCTTGCCAC--TAAGAAAGTCCCCCAGAAATATACGTCAGGTCAATGAGTATATAAAT-GAGGCTGTAGCACAGC
i canFam3.chr1              I 79 I 150
e calJac3.chr22              45876304 2755 +  49145316 I
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=370166.000000
s hg38.chr19_GL949751v2_alt    833628 192 +   1002683 CTGCA---------------------------------------ACTTGAGACTTCTCACTAGGGGTCTTGAAATGCTGTCTGGACACCACCATCGCTTTCCTCCCTGAGAACTTCTACT-TATCAACCCATTTATATACTCATCGCATGGGTCCTCACGCCCTCCCATTATTCTGGTGCCTCATGCCGGTCAAATTTATTCTCTAAATCTGATTTTTCCATTAAATAGcag
s panTro4.chr19              59835530 189 +  63644993 CTGCA---------------------------------------ACTTGAGACTTCTCACTAGGGGTCTTGAAATGCTGTCTGGACACCACCATCGCTTTCCTCCCTGAGAA---CTACT-TATCAACCCATTTATATACTCATCGCATGGGTCCTCACGCCCTCCCATTATTCTGGTGCCTCATGCCAGTCAAATTTATTCTCTAAATCTGATTTTTCCATTAAATAGcag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56748522 192 +  60714840 CTGCA---------------------------------------ACTTGAGACTTCTCACTAGGGGTCTTGAAATGCTGTCTGGACACCACCACCGCTTTCCTCCCTGAGAACTTCTACT-TATCAACCCATTTATATACTCATTGCATGGGTCCTCACGCCCTCCCATTATTCTGGTGCCTCATGCCAGTCAAATTTATTCTCTAAATCTGATTTTTCCGTTAAATatcag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103285628 177 - 106955855 CTGCA---------------------------------------ACT-------------TATGGGTCTTGAAATGCTGTCTGGACACCACCATCGCTTTCCTCCCTGAGAACTTCTACT-TATCAACCCATTTATGTACTCATCGCATGGGTCCTCACGCCCTCCCATTATTCTGGTGCCTCATGCCAGTCAAATTTATTCTCTAA--CTGATTTTTCTGTTAAATatcag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55700703 191 +  59248254 CTGCA---------------------------------------ACTTGAGACTTCTCACTAGGGGCCTTTAAATGCTGTCTGGACACCACCATCGCTTTCCTCCCTGAGAACTTCTACT-TATCAACCCATTTACATACTCACCACATGGG-CCCCACACCCTCCCATTATTCTGGTGCCTCATGCCAGTCAAATTTATTCTCTAAATCTGATTTTTCCGTTAAATatcaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47813294 191 +  51301725 CTGCA---------------------------------------ACTTGAGACTTCTCACTAGGGGCCTTTAAATGCTGTCTGGACACCACCATCGCTTTCCTCCCTGAGAACTTCTACT-TATCAACCCATTTACATACTCACCACATGGG-CCCCACACCCTCCCGTTATTCTGGTGCCTCATGCCGGTCAAATTTATTCTCTAAATCTGATTTTTCCGTTAAATATCAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47529564 191 +  50890351 CTGCA---------------------------------------ACTTGAGACTTCTCACTAGGGGCCTTTAAATGCTGTCTGGACACCACCATCACTTTCCTCCCTGAGAACTTCTACT-TATCAACCCATTTACATACTCATCACATGGG-CCCCACACCCTCCCACTATTCTGGTGCCTCATGCCAGTCAAATTTATTCTCTAAATCTGATTTTTCCGTTAAATatcaa
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               19993316 223 - 122678785 ctgcaggcagacactcaaccactgagccatccaggtgccccAGCACCTGAGACTCCTGATTATGGTCCTTAAAATGCTGTCTGGACC---------CTTTGTTCCTTACAAATTTTTATTCTATCAACCCATTAATATAACCATTATAGGGGTCCCTTCCCCCCACCAGTAATCTGACACCCCACATGGCTGAAACCCATTCTTTAAATCTGAGCTTTATGTTATATATCAG
i canFam3.chr1              I 150 I 8686
e calJac3.chr22              45876304 2755 +  49145316 I
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=345796.000000
s hg38.chr19_GL949751v2_alt    833820 204 +   1002683 cctggccaacacggtaaaaccccatctctactaaaaaatacaaaatattagccaggcgcagtggcttgcacccgtaatctcagctactcgggaggctgaggcagcagaatcacttgaacccgggaggcagaggttgtggtaagccgagattgcaccactgcactccagcctggtaacagagcgagactccctctcaaaataaat
s panTro4.chr19              59835719 204 +  63644993 cctggccaacacggtaaaaccccatctctactaaaaaatacaaaatattagccaggcgcagtggcttgcacccgtaatctcagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgtggtaagccgagattgcaccactgcactccagcctggtaacagagcgagactccctctcaaaataaat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56748714 204 +  60714840 cctggccaacacggtaaaaccccatctctactaaaaagtacaaaatattagccaggcgcagtggctcgcacccctaatctcagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgtggtgagccgagattgcgccactgcactccagcctggtaacagagtgagactccgtctcaaaataaat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103285805 204 - 106955855 cctggccaacacagtaaaaccccatctctactaaaaaatacaaaatattagccaggcgcagtggctcgcacccgtaatctcagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcagggggggtggtgagccgagattgcgccactgcactccagcctggtaacagagcgagactccgtctcaaaataaat
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55700894 202 +  59248254 cctgg-caacacgatgaaaccccgtctctactaaaaa-tacaacatattagccgggcgcagtgtctcgcacccgtaatctcagctactcgggaggctgaggcagaagaatcgcttgaacctgggaggtggaggttgcagtgagccgagctcacgccactgcactccagcctggtaacagagcgagactccatctctaaataaat
i macFas5.chr19             C 0 I 16
s papAnu2.chr19              47813485 202 +  51301725 CCtgg-caacacgatgaaaccccgtctctactaaaaa-tacaacatattagccaggcgcagtgtctcgcacccgtaatctcagctactcgggatgctgaggcagaagaatcgcttgaacctgggagttggaggttgtggtgagccgagatcacgccactgcactccagcctggtaacagagcgagactccatctctaaataaat
i papAnu2.chr19             C 0 I 16
s chlSab2.chr6               47529755 202 +  50890351 cctgg-caacacaatgaaaccccgtctctactaaaaa-tacaacatattagccgggcgcagtgtctcgcacccataatctcagcaactaaggaggctgaggcaggagaaccgcttgaacccgggaggtggaggttgcggtgagccaagatcacgccactgcactccagcctggtaacagagcgagactccgtctctaaataaac
i chlSab2.chr6              C 0 I 4
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45876304 2755 +  49145316 I
e rheMac3.chr19              60573517 1283 +  64156825 I

a score=344433.000000
s hg38.chr19_GL949751v2_alt    834024 142 +   1002683 aaaCTGCTGACTCGCGTATTTTTTCTTTACCCCAACTCATTCCTTACATGTAGgcacctgtaatcctagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcggtgagccaaaatcgtgcc
s panTro4.chr19              59835923 142 +  63644993 aaaCTGCTGACTTGCGTATTTTTTCTTTACCCCAACTCATTCCTTACATGTAGgcacctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcggtgagccaagatcgtgcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56748918 142 +  60714840 aaaCTGCTGACTTGCGTATTTTTTCTTTACCCCAACTCATTCCTTATATGTAAgcacctgtaatcccagctactcacaagggtgaggcaggagaatggcttgaacctgggaggcggaggttgcggtgagccgagatcgtgcc
i ponAbe2.chr19             C 0 I 2137
s nomLeu3.chr10             103286009 142 - 106955855 aaaCTGCTGACTTGCGTATTTTTTCTTTACCCTAACTCATTCCTTACATGTAGgcacctgtaatcccagctactcagaaggctgacgcaggagaatcgcttgaagctgggaggcggaggttgcggtgagccgagatcgtgcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60574800 142 +  64156825 AAACTGCTGACTTGCATATTTTTTCTTTACCCCAACTCATTCCTTACATGTAGAcacctgtcatcccagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggtggaggtcgcggtgagctgagatcgcacc
i rheMac3.chr19             I 1283 C 0
s macFas5.chr19              55701112 142 +  59248254 aaaCTGCTGACTTGCATATTTTTTCTTTACCCCAACTCATTCCTTACATGTAGAcacctgtcatcccagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggtggaggtcgcagtgagctgagatcgcgcc
i macFas5.chr19             I 16 C 0
s papAnu2.chr19              47813703 142 +  51301725 aaactgctgacttgcatattttttctttacccCAACTCATTCCTTACATGTagacacctgtcatcccagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcggtgagctgagatcgcgcc
i papAnu2.chr19             I 16 C 0
s chlSab2.chr6               47529961 142 +  50890351 aaaCTGCTGACTTGCATATTTTTTCTTTACCCCAACTCATTCCTTACATGTAGAcacctgtcatcccagctactcagaaggctgaggcaggagaatcacttgcacctgggaggcggaggtcgcagtaagctgagatcgcgcc
i chlSab2.chr6              I 4 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45876304 2755 +  49145316 I

a score=264156.000000
s hg38.chr19_GL949751v2_alt    834166 172 +   1002683 actgcactccagcctgggcgacagagcgagactccatctc--aaaaaaaaaaaaaaaaaaaCCACATAGGCTCAGTCTTTTCAGTATCTGCTTTACTGGTTCAGTAAAAGCCAGGAAACACAACTTTGTGGTAATC------------------------------TGAATGTTATTGAACTGTATTTTGTTCACTTTATTGTA
s panTro4.chr19              59836065 171 +  63644993 actgcactccagcctgggcgacagagcgagactccatctc---aaaaaaaaaaaaaaaaaaCCACATAGGCTCAGTCTTTTCAGTATCTGCTTTACTGGTTCAGTAAAAGCCAGGAAACACAACTTTGTGGTAATC------------------------------TGAATGTTATTGAACTGTATTTTGTTCACTTTATTGTA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103286151 174 - 106955855 actgcactccagcctgggcgacagagcgagactccatctcgaaaacaaaacaaaaaaaaaaCCACATAGGCTCAATCTTTTCAGTATCTGCTTTACTGGTTCAGCAAAAGCCAGGAAACATGACTTTGTGGTAATC------------------------------CGAATGCTATTCAACTGTATTTTATTTACTTTATTGTA
i nomLeu3.chr10             C 0 I 898
s rheMac3.chr19              60574942 163 +  64156825 acagcactccagcct-ggtgacaaagcgagactccatctc--------aaaaaaaaaaaaa--GTGTAGGCTCAATCTTTTCAGTATTTGTTTTACTGGTTCAGCAAAAGCCAGGAAACACAACTTTGTGGTAATC------------------------------CGAGTGTTATTCAACTGTATATGGTTTACTTTATTGTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55701254 165 +  59248254 actgcactccggcct-ggtgacaaagcgagactccatctc------aaaaaaaaaaaaaaa--GTGTAGGCTGAATCTTTTCAGTATTTGCTTTACTGGTTCAGCAAAAGCCAGGAAACACAACTTTGTGGTAATC------------------------------CGAGTGTTATTCAACTGTATATGGTTTACTTTATTGTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47813845 168 +  51301725 actgcactccggcct-ggtgacaaagtgagactccatctc---aaaaaaaaaaaaaaaaaa--gtgtaggctCAATCTTTTCAGTATTTGCTTTACTGGTTCAGCAAAAGCCAGGAAACACAACTTTGTGGTAATC------------------------------CGAGTGTTATTCAACTGTATATGGTTTACTTTATTGTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47530103 195 +  50890351 actgcactccggcct-ggtgacaaagcgagactctatctc------aaaaaaaaaaaaaaa--GTATAGGCTCAATCTTTTCAGTATTTGCTTTACTGGTTCAGCAAAAGCCAGGAAACACAACTTTGTGGTAATTGTGTTTTTCAACCGTGAGTGTTGTAAGTGGTAAGTGTTATTCAACTGTATATTGTTTACTTTATTGTA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45876304 2755 +  49145316 I

a score=363439.000000
s hg38.chr19_GL949751v2_alt    834338 342 +   1002683 AATACTAGTGAACAGTG---AATAAATGGTTGTATATTCCTAATaagaaaaaaa-aaaaaaaagacccaaagtacagcgagctgatgccgatctcatttcgcagaggtccgcctgctctcccctctccaagagtgtaatcctatgcttaataaacttatgccgctttgctatgtgtgtgtatcacacccaattctttgttcgaaacaccaagggcctggaacttcacagctttggctggtaac--GGGGAGCAGGGGTAAAGACATTTAAAAGCTGCT--TGtgttaaccataatcgccatcccat-atatcagacccccagaactaactcatcttataactgaata-----ttgt
s panTro4.chr19              59836236 344 +  63644993 AATACTGGTGAACAGTG---AATAAATGGTTGTATATTCCTAATaag-aaaaaa-aaaaaaaagacccaaagtacagcgagctgatgccgatctcatttcacagaggtccgcctgctctcccctctccaagagtgtaatcctatgcttaataaacttatgccgctttgctatatgtgagtatcacacccaattctttgttcgaaacaccaagggcctggaacttcacagcttcagctggtaacaGGGGGAGCAGGGGTAAAGACATTTAAAAGCTGCT--TGtgttaaccataatcgccatcccgt-atatcagacccccagaaccaactcatcttataactgaata----cttgt
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60575105 332 +  64156825 AATACTGGTGAACAGTGGTCAATAAATGGTTGTATATCCCTAATTAG------GAAAAaaaaagacccgaagtacagcaaactgacgccgatctcattttgcagaggtccacctgctctcccctctcc--gagtgtaatcctgtgcttaataaactgctgctgctttgctaggtgtgtgtatcacaacccatgctttgttcacaccaccaaggacccaggacttcacaccttcagctggtaa---------caGGggtaaggacatttaaaacctgct--cgtgttaaccataatcgtcatcgtgtaacattggatccccagaagtaactcatcttataactgaatactgt-----
i rheMac3.chr19             C 0 I 36
s macFas5.chr19              55701419 327 +  59248254 AATACTGGTGAACAGTGGTCAATAAATGGTTGTATATCCCTAATTAG------G-AAAaaaaagacccgaagtacagcaaactgacgccgatctcattttgcagaggtccacctgctctcccctctcc--gagtgtaatcctgtgcttaataaactgctgctgctttgctaggtgtgtgtatcacgacccatgctttgttcacaccaccaaggacccaggacttcacaccttcagctggtaa---------caGGGGTAAGGACATTTAAAACCTGCT--CGtgttaaccataatcgtcatcatgtaacattggatccccagaagtaactcatcttataactgaata---------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47814013 323 +  51301725 AATACTGGTGAACA-TGGTCAATAAATGGTTGTATATCcctaattag------g-aaaaaaaagaccCGAAGTACAGCAAACTGACGCCGATCTCATTTTGCAGAGGTCCGCCTGCTCTCCCCTCTCC--GAGTGTAATCCTGTGCTTAATAAA---CTTCTGCTTTGCTAGGTGTGTGTATCACGACCCATGCTTTGTTCACACCACCAAGGACCCAGGACTTCACACCTTCAGCTGGTAA---------CAGGGGTAAGGACATTTAAAACCTGCT--TGTGTTAACCATAATCGCCATCGTGTAACATTGGATCGCCAGAAGTAACTCATCTTATaactgaata---------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47530298 339 +  50890351 AATACTGGTGAACAGTGGTCAATAAATGGTTGTATATCCCTAATTAG--------AAAaaaaagacccgaagtatagcaaactgacgccgatctcattttgcagaggtccacctgctctcccctctctgagagtgtaatcctgtgcttaataaacttctgctgctttgctaggtgtgtgtatcacgacccatgctttgttcacaccaccaaggacccaggacttcacagcttcagctggtaacaGGGGAAGCAGGGGTAAGGACATTTAAAACCTGCTTGTGtgttaaccgtaatcgccattgtgtaacattgggtccccagaagtaactcatcttataactgaata---------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45876304 2755 +  49145316 I
e nomLeu3.chr10             103286325 898 - 106955855 I

a score=377.000000
s hg38.chr19_GL949751v2_alt    834680  9 +   1002683 gc--ttttttt
s panTro4.chr19              59836580 11 +  63644993 gcttttttttt
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45876304 2755 +  49145316 I
e nomLeu3.chr10             103286325 898 - 106955855 I
e chlSab2.chr6               47530637  0 +  50890351 C
e papAnu2.chr19              47814336  0 +  51301725 C
e macFas5.chr19              55701746  0 +  59248254 C
e rheMac3.chr19              60575437 36 +  64156825 I

a score=341851.000000
s hg38.chr19_GL949751v2_alt    834689 285 +   1002683 ttttttttttttttgagacgaagtcct--gctctgtcacccaggctggagtgcagtggcgcgatcttgact--ctgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaagtgcgtgccaccacgcccggctaatttttgtatttttagtagagacggggtttctccatgttggtctcaaactcctggtctcaggtgatccacccgccttggcctcccaaagtgctgggattacagacgtgagccaccacacccagct
s panTro4.chr19              59836591 287 +  63644993 ttttttttttttttgagacgaagtcct--gctctgtcacccaggctggagtgcagtggcgcgatcttgactcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaagtgcgtgccgccacgcccggctaatttttgtatttttagtagagacggggtttctccatgttggtctcaaattcccgatctcaggtgatccacccgccttggcctcccaaagtgctgggattacagacgtgagccaccacacccagct
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60575473 285 +  64156825 ctttttttttttttgagatcaagtc----tctctctctctcaggctggagttctgtggcacgatctcagctcactgcaacctctgcctctcgggttcaagcagttctcctgcctcggcctcctcagtagctgggattacaagtgcatgccaccacgcccagctaattttcgtatttttagtagagacagggtttctccatgttggtctcgaactcccgaccccaggtaatccacccaccttggcctcccaaagtgccgggatgacagacaggagccaccacgcccagct
i rheMac3.chr19             I 36 C 0
s macFas5.chr19              55701746 283 +  59248254 ctttttttttttttgagatcaag------tctctctctctcaggctggagttctgtggcgcgatctcagctcactgcaacctctgcctctcgggttcaagcagttctcctgcctcggcctcctcagtagctgggattacaagtgcatgccaccacgcccagctaattttcgtatttttagtagagacagggtttctccatgttggtctcgaactcccgaccccaggtaatccacccaccttggcctcccaaagtgccgggatgacagacaggagccaccacgcccagct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47814336 288 +  51301725 -cttttttttttttgagatgaagtctctttctcactcactcaggctggagttctgtggcgcgatctcagctcactgcaacctctgcctctcgggttcaagcagttctcctgccttggcctcctcagtagctgggattacaagtgcatgccaccacgcccagctaatttttgtatttttagtagagacagggtttctccatgttggtctcgaactcccgaccccaggtaatccacccaccttggcctcccaaagtgctgggatgacagacaggagccagcacgcccagct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47530637 280 +  50890351 ---cttttttttttgagacgatg------tctctctcactcaggctggagctctgtggcgcgatctcagctcactgcaacctctgcctcctgggttccagcagttctcctgcctcggcctcctcagtagctgggattacaagtgcaagccaccacgcccagctaatttttgtatttttagtagagacagggtttctccatgttggtctcgaactcccgacctcaggtgatccacccacctcggcctcctaaagtgccgggatgacagacaggagccaccacgcccagct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45876304 2755 +  49145316 I
e nomLeu3.chr10             103286325 898 - 106955855 I

a score=880354.000000
s hg38.chr19_GL949751v2_alt    834974 586 +   1002683 acttgtgctttttgaccaacatcttcctctcctaccacccccag-cccctgataacctccacctactctcac----ttctaggagatcaactgttctattttttttttttttttttttttttt------gagtctcgctctgcacacccaggctggagtgcagtgctgcaatctcggatcactgcaacctccgctttccgggttcaagcgattctcctgcctcagcctccagagtcgctgggattac-----tgagccaccgcgcccagccaGAAGACCCAC-------------------------------------------GCTCCCTAAGACATAACCCACACTGGTGGCCTTTGTtctgacttctcacctgtgctccccacccgctagaaactggcttctctccccacacttcctctgaagctgtctgtgtgaccaacactaatgagcttccttcctggaacatgcagtgacccttttcagcccttctcattattgctcccccacagttgtatttgacacgttgaccacttcctcctcgaaggactcacttctctggctttctcggacacttcttgctactcgttttcTGACGGT---TACAGTACCAACAGG-TTTGCAGGCACCTCCACCACCAGAGCCaa
s panTro4.chr19              59836878 580 +  63644993 a------ccttttgaccaacatcttcctctcctaccacccccagccccctggtaacctccacctactttcac----ttctaggagatcaactGttcta--ttttttttttttttttttttttt------gagtctcgctctgcacacctaggctggagtgcagtgctgcaatctcggatcactgcaacctccgcttcccgggttcaagcgattctcctgcctcagcctccagagtagctgggattac-----tgagccaccgcgcccagccaGAAGACCCAC-------------------------------------------GctccctaagacataacccacactggcggcctttgttctgacttctcacctgtgctccccacccgctagaaactggcttctctccccacgcttcctctgaagctgtctgtgtgaccaacactaatgagcttccttcctggaacacgcagtgaccctgctcagcccttctcattattgctcccccacagttgtatttgacacgttgaccacttcctcctcgaaggactcacttctctggctttctcggacacttcttgctactcgttttcTGACGGT---TACAGTACCAACAGGTTTTACAGGCGCCTCCACCACCAGAGCCaa
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60575758 593 +  64156825 acttgtgccttttgaccaacatcttcctcccctgccacgcccag-cccctggtaaccgccacctagtcttgc----ttct---aGATCAACCAC--------------tttttttttttttttgagacggagtcgcgctcggcacacccaggctggagtgcagtgctgccatctcggatcactgcaacctccgcttcccgggttcaagcgattctcctgcctcagcctccagagtagctgggattac-----tgagccaccgcgcccagcCAGGAGACCCACTCCCACTGACCCTCACTGGTC-CGTGGCTCT---GGGGGCCACGTTCCCTAAGACATAACCCACACTGGCAGCCTTTGCTCTGACCTCTCACCTGTGGTCCCCACCTGCTGGAAACCGGCTTCTCTGCCCACACTTCCTCTGAAGCTGTGTGTGTGACCAACCCTGATGAG----CTTCCTGGAACA--CAGTGACCCTGCTCAGTCCTTCTCATTATTGCTTCTCCATTGTTGTATTTCACACATTGACCACTTCCTCCTCAAAGGTGTCACCTCGCTGGCCCTCTCGGACACTTCTTGTGACTCGTTTTCTGACAGT-------------------TTTACCGGCACCCCCACCACCAGAGCCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55702029 608 +  59248254 acttgtgccttttgaccaacatcttcctcccctgccacgcccag-cccctggtaaccgccacctagtcttgcttctTTCT---AGATCAACCCCttt---tttttttttttttttttttttttgagacggagtctcgctctgcacacccaggctggagtgcagtgttgccatctcggatcactgcaacctccgcttcccgggttcaagcgattctcctgcctcagcctccagagtagctgggattac-----tgagccaccgcgcccagcCAGGAGACCCACTCCCACTGACCCTCACTGGTC-CGTGGCTCT---GGGGGCCACGTTCCCTAAGACATAACCCACACTGGCAGCCTTTGTTCTGACCTCTCACCTGTGGTCCCCACCTGCTGGAAACCGGCTTCTCTGCCCACACTTCCTCTGAAGCTGTGTGTGTGACCAACCCTGATGAG----CTTCCTGGAACA--CAGTGACCCTGCTCAGTCCTTCTCATTATTGCTTCTCCATTGTTGTATTTCACACATTGACCACTTCCTCCTCAAAGGTGTCACCTCGCTGGCCCTCTCGGACACTTCTTGTGACTCGTTTTCTGACAGT-------------------TTTACCGGCACCCCCACCACCAGAGCCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47814624 615 +  51301725 acttgtgccttttgaccaacatcttcctcccctgccacgcccag-cccctggtaaccgcCACCTAGTCTTGC----TTCTAGGAGATcaaccac--------------tctttttttttttttgagacggagtctcgctctgcacacccaggctggagtgcagtgctgctatctcggatcactgcaacctccgcttcccgggttcaagcgattctcctgcctcagcctccagagtagctgggattac-----tgagccaccgcacccagccaggagaTCCACTCCCACTGACCCTCACTGGTC-CGTGGCTCC--AGGGGGCCATGTTCCCTAAGACATAACCCACACTGGCAGCCTTTGTTCTGACCTCTCACATGTGGTCCCCACCTGCTGGAAACCAGCTTCTCTACCCACACTTCCTCTGAAGCTGTGTGTGTGACCAACCCTGATGAG----CTTCCTGGAACA--CAGTGACCCTGCTCAGTCCTTCTCATTATTGCTTCTCCATTGTTGTATTTCACACGTTGACCACTTCCTCCTCAAAGGTGTCACCTCGCTGGCCCTCTCGGACACTTCTTGCGACTCGTTTTCTGACAGTTTTACCAGCACCAACAGG-TTTACCGGCACCCCCACCGCCAGAGccag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47530917 604 +  50890351 acttgtgccttttgaccaacatcttcctctcctgccacgcccag-cccctggtaaccgccacctagtcttgc----ttct---aGATCAACCAt------------------tctttttttttgagatggagtctcgctctgcacgcccaggctggagtgcagtgctgcaatctcagatcactgcaacctctgcttcccgggttcaagcaattctcctgcctcagcctccagagtagctgggattac-----tgagccaccgtgcccagcCAGGAGACCCACTCCCACTGACCCTCACTAGTCACGT---TCT----GGGTCCACGTTCCCTAAGACATAACCCACACTGGCAGCCTTTGTTCTGACCTCTCACATGTGGTCCCCACCCGATGGAAACCGGCTTCTCTGCCCACACTTCCTCTGAAGCTGTGTGTGTGACCAACCCTGATGAG----CTTCCTGGAACA--CAGTGACCCTGCTCAGTCCTTCTCATTATTGCTTCTCCATTGTCGTATTTCACACGTTGACCACTTCCTCCTCAAAGGTGTCACCTCGCTGGCCTTCTCGGACACTTCTTGCGACTCGTTTTCTGACAGTTTTACCAGCACCAACAGG-TTTACCGGCACCCCCACCGCCAGAGCCAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45879059 613 +  49145316 acttctgcccattgaccaacatctcactccct--cctgccccag--cccggggaacctctacctactctcac----ttctaggagatcaacc----------------ttCCTCttttttttttaga--gggtctcactctgcacacccagcctggagtgcagtggcgcaatctcagctcactgcaacctccacttcccaggttgaagcgattctcctgcctcagcctccagagtaattgggattacaggcgtgagccaccgcgcccagcCAGAAGACCCACTCCCAGTGGCCCTCACTGGCC-CATGGCTCTGGGGGGGCCCGCGTTCCCTAAGGCATAACTCACACAGGCAGCCTTTGTTCTGACCTGTTGCGTGTGCTCCCCACCCGCTGGAAACTGGCCCCTCTCCCCACACCTGCTCTGAAGCTGTCTGTGTGACCAACGCTAATGAG----CTTCCTGGAACACACAGTGA-CCTGCTCAGCCGTTCTGATGACTGCTCCTCCACACTTGTATTTGACACATTGACCACTTCCTCCTCAAAGGAGTCAGTTCTCTGGTTCTCTCGGACACTTCCTGCTAGTCGTCTTCTGACGGT---TACAGCATGCACAGG-CTTACGGACGCCTCCAACACCAGAGCCGA
i calJac3.chr22             I 2755 I 8977
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e nomLeu3.chr10             103286325 898 - 106955855 I

a score=127565.000000
s hg38.chr19_GL949751v2_alt    835560 107 +   1002683 tcccagctactcgggaggctgaggcaggagaatcgttcaaacccgggaggcagaggttgcagtgagtcgagattgcgccactgcactccagcctgagtgacagactg
s panTro4.chr19              59837458 107 +  63644993 tcccagctactcgggaggctgaggcaggagaatcgttcaaacccgggaggcagaggttgcagtgagtcgagattgcgccactgcattccagcctgagtgacagactg
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60576351 101 +  64156825 tcccagctactcgggaggctgaggcaggagaatcgctggaacccgggaggcagaggttgcaatgaaccgagattgtg------ctctccagcctgggtgacagactg
i rheMac3.chr19             C 0 I 548
s macFas5.chr19              55702637 101 +  59248254 tcccagctacgcgggaggctgaggcaggagaatcgctggaacccgggaggcagaggttgcaatgaaccgagatcgtg------ctctccagcctgggtgacagactg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47815239 107 +  51301725 tcccagctacgcgggaggctgaggcaggagaatcactggaacccgggaggcagaggttgcaatgaaccgagatcgtgccactactctccagcctgggtgacagactg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47531521 107 +  50890351 tcccagctacacgggaggctgaggcaagagaatcgctggaacccgggaggcagaggttgcaatgaaccgagatcgtgccactactctccagactgggtgacagactg
i chlSab2.chr6              C 0 I 518
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e nomLeu3.chr10             103286325 898 - 106955855 I

a score=11690.000000
s hg38.chr19_GL949751v2_alt    835667 50 +   1002683 tga---ctcctcaaaaaaaaacaaaaacaaaaacaaaaaaaCTACagtcttgc
s panTro4.chr19              59837565 48 +  63644993 tga---ctcctcaaatacaa--aaaaacaaaaacaaaaaaaCTACagtcttgc
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55702738 41 +  59248254 agagtcctcctcaaaattaa--aaaaat----------aaaTTACAGTCTCGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47815346 41 +  51301725 agagtcctcctcaaaattaa--aaaaat----------aaattacagtctcgc
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e nomLeu3.chr10             103286325 898 - 106955855 I
e chlSab2.chr6               47531628 518 +  50890351 I
e rheMac3.chr19              60576452 548 +  64156825 I

a score=20405.000000
s hg38.chr19_GL949751v2_alt    835717 29 +   1002683 tctgtcgcccaggatgga----atgcagtggtg
s panTro4.chr19              59837613 29 +  63644993 tctgtcgcccaggatgga----atgcagtggtg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103287223 29 - 106955855 tttgtcactcagggtgga----atgcagtggtg
i nomLeu3.chr10             I 898 C 0
s macFas5.chr19              55702779 33 +  59248254 TGTGTCAACCAGGATGGAATGCATGCAGTGgtg
i macFas5.chr19             C 0 N 0
s papAnu2.chr19              47815387 33 +  51301725 tgtgttgcccaggatggaatgcatgCAGTGGTG
i papAnu2.chr19             C 0 N 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e chlSab2.chr6               47531628 518 +  50890351 I
e rheMac3.chr19              60576452 548 +  64156825 I

a score=58711.000000
s hg38.chr19_GL949751v2_alt    835746 322 +   1002683 ccatcttggctcactgcaacctctgcctgctggggtctagcgattctcctgcctcagccccccaaggagctgggactacaggcatgtgccgccacgcctggctaatttttgtatttttagtggagatgggggttttaccatgttagccaggttggtcttgaactcccgacctcatgtgatccgcccaccttggcctcccaaagtgcgaggattacag------gcccccgcacccagccTAGGATCCTGCACCTCTCTAGCCTagcagttctctgctgggtgattttgctctcca-----ctccagggg--acatttggcaatgcccatggtaat
s panTro4.chr19              59837642 322 +  63644993 ccatcttggctcactgcaacctctgcctgctggggtctagcgattctcctgcctcagccccccaaggagctgggactacaggcatgtgccgccacgcctggctaatttttgtatttttagtggagacgggggttttaccatgttagccaggttggtcttgaactcctgacctcatgtgatccgcccaccttggcctcccaaagtgctaggattacag------gcccccgcacccagccTAGGATCCTGCACCTCTCTAGCCTagcagttctctgctgggtgattttgctctcca-----ctccagggg--gtatttggtaatgcccatggtaat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103287252 313 - 106955855 cagtcttggctcactgccacctccacctccagggttctagtgattctcctgcctcagcctcctgaatagctgggattacaggcatgcaccaccacgcccggctaatttttgtatttttagtagaaat-ggggtttcacaatgttggccagactggtcttgaactcctgacctcaggtgatccaccagcctcggcctcccaaagtgctgggattacaggtgtgagtcaccgtgcccggcc-ACCATCTT-CTCCTCTTTATCC-----GCACTTTGC--------CTTGTTCTTCAGGGCTCTGCAGAGGTATCATT------TCCTCCAAGAGAG
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e chlSab2.chr6               47531628 518 +  50890351 I
e rheMac3.chr19              60576452 548 +  64156825 I

a score=132624.000000
s hg38.chr19_GL949751v2_alt    836068 238 +   1002683 ttttaattgtcatgacttgg-ggaggggttctactggcatctggtaggtagggtccaggggtgctgctcagcttcctacaatgcccag-ggcagccccagatggcag----------------------cagcaccaaggctgagaaacactgGCTCATGC------------AGAAAGC---AACCACCTTACACCCTTCAGTGCAGGGACAAAGGCAGGGTTACGAGTCCACGGAAACTCTCCAGTCTCAGCCTA-CGTAAGACGTGGCTATTTTT
s panTro4.chr19              59837964 238 +  63644993 ttttaattgtcatgacttgg-ggaggggctctactggcatctggtaggtagggtccaggggtgctgctcagcttcctacaatgcccag-ggcagccccagatggcag----------------------cagcaccaaggctgagaaacactgGCTCATGC------------AGAAAGC---AACCAGCTTACCCCCTTCAGTGCAGGGACAAAGGCAGGGTTTTGAGTCCACGGAAACTCTCCAGTCTCAGCCTA-CGTAAGACGTGGCTATTTTT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103287565 238 - 106955855 CTTCCACAGCTCCGACTTgg-gaaggggctctaccggcatctagtaggtagggtccaggaatgctgctcagcttcctacaatgcccag-ggcagccccAGATGGCAG----------------------CAGCCCCAAGGCTGAGAAACACTGGCTCATCC------------AGAAAGC---AACCACCTTACACACTTCAGTGTAGGGACAAAGGCAGGGTTATGAGTCCACGGAAACTCTCCAGTCTCAGCCTA-CGTAAGACGTGGCTATTTTT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55902572 276 +  59248254 tctttgttgtcataacctggcgcagggg--ctagtggcatcggctgggtagaggccagggaggcggctccacacccagcagcgctcagcagctgccccacaaggagaaggatctgccccaaaatgtggctagcgcccaggctgagaaaccctCACTCAAGACAATTTTCTGCGAGAAAACAATAACCACTTTAAACCATTCAATTTGAGGGCAAAGGCAGGGTTCCAAGTCCAAGGGCACTCTCCAAGCTCAGCTTAGGGTAGGACGTGTCTATTTTT
i macFas5.chr19             N 0 N 0
s papAnu2.chr19              47991677 275 +  51301725 TTTTTGTTGTCATAACCTGGCGCAGGGG--CTAGTGGCATCGgctgggtggaggccagggaggcGGCTCCACACCCAGCAGCGCTCAGCAGCTGCCCCACAAGGAAAAGGATCGGCCCCAAAATGTGGCTAGCGCCCAGGCTGAGAAACCCTCACTCAAGA-AATTTTCTGCGAGAAAACAATAACCACCTTAAACCATTCAATTTGAGGGCAAAGGCAGGGTTCCAAGTCCAAGGGCACTCTCCAAGCTCAGCTTAGGGTAGGACATGTCTATTTTT
i papAnu2.chr19             N 0 N 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e chlSab2.chr6               47531628 518 +  50890351 I
e rheMac3.chr19              60576452 548 +  64156825 I

a score=299668.000000
s hg38.chr19_GL949751v2_alt    836306 1191 +   1002683 Ctttcttattgtttttattcatttatttttcttgagacagagtcttgctctgtcgcccaggctggactgcagtggcgcgatctctgctcactgcaagctccgcctcccgggatcacaccattctc---------------------ctgggactacaggcgcccgccacctagcccggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgat---ctgacctcgtgatcctcccgcctcggcctctcaaagtgctgggattacaggtgtaagccaccgcacccggccTTATTCATTTATTTTTTGAGATAGAGTCTGAGCCCtttattttatttatttagagaccaagtctcgctctgttacccaggctggagtgcagtgtcgtggcctcagctcactgcaacaacctccgcctcccgggttcaagcgattctcccaccttggcctcccaaagtgctggcattacagacacccactaccatgcctggctaattttttgtacttttagtaagtaaagacagggtttcaccatcttggtcaggatggtctcgaactcctggcctcaagtgatcggcccgcctgggtctcccaaagtgatgagattacaggcgtgagcgaccacacTGGcctaatgtgtagttttttatctgtggcctcccttctgccctcccccttctgagactctgaagcccattacatcactctgcctttgtgtaccaacagcttagctcccactgagaacatacagagccaggcacggtggcggtggctcacgcctgtaatcccatcactttgggggtgctgaggcaggtgtatcgcctgaggccaggagttcaagaccagtctggccaacatggtgaaaccccatctctactaaaaatagaaaaatacatagctgggtgtggtggcacgtgcctataatcccagctactagggaggctgaggttggagaatcgcttgaacccaggaggcggaggttgcggtgagccaagatcacaccattgcactctagcctgggcaacaagagcaaaactgtcttaaaaaaaaaaaaaaaaagtgagaacatatggattctactcctgttagaataatggcctccagctccatccaaattgctggaaatgacattatttcattccttctaatggctgaatagtattccatggtacatagacaccacgttttcttt
s panTro4.chr19              59838202 1178 +  63644993 Ctttcttattgtttttattcatttatttttctcgagac--agtcttgctctgtcgcccaggctggactgcagtggcgcgatctcggctcactgcaagctccgcctcccgggatcacgccattctc---------------------ctgggactacaggcgcccgccacctagcccggctaattttttgtatttttaatagagacggggtttcaccatgttagccaggatggtctcgat---ctgacctcgtgatcctcccgcctcagcctctcaaagtgctgggattacaggtgtaagccaccgcacccggccTTATTCATTTATTTTTTGAGACAGAGTCTGAGCCC-----tttatttatttagagaccaagtctcgctctgttacccaggctggagtgcagtgtcgtggcctcagctcactgcaacaacctctgcctcccgggttcaagcaattctcccgccttggcctcccaaagtgctggcattacagacacccactaccatgcctggctaattttttgtacttttagtaagtaaagacagggtttcaccatcttggtcaggatggtctcgaactcctggcctcaagtgatcggcccgcctgggtctcccaaagtgatgagattacaggcgtgagcgaccacacTGGcctaatgtgtagttttttatctgtggcctcccttctgccctcccccttctgagactctgaagcccattacatcactctgcctttgtgtaccaacagcttagctcccactgagaacatacagagccaggtacggtggcggtggctcactcctgtaatcccagcactttgggggtgctgaggcaggtgtatcgcctgaggccaggagttcaagaccagtctggccaacatggtgaaaccccatctctactaaaaatagaaaaatacatagctgggtttggtggctggtgcctataatcccagctactagggaggctgaggttggagaatcgcttgaacccaggaggcggaggttgcggtgagccaagatcacaccattgcactctagcctgggcaacaagagcaaaactgtctt---aaaaaaaaaaaaaagtgagaacatatggattctactcccattagaataatggcctccagctccatccaaattgctggaaatgac---atttcattccttctaatggctgaatagtattccatggtacatagacaccacgttttcttt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103287803 1186 - 106955855 Cttttttattgtatttattcatttattttttttgagacagagtctcgct-tgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccggattcacgccattctcctgcctcagcctccccagtagctgggactataggcgcccgccaccacgcccggctaattttttgtagttttagtagagacggggtttcaccgtattagccaggatggtctcaatctcctgacctcgtgatcctcctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccTTATTCATTTATTTTTTGAGACAGAGTCTGAGCCAtttattttatttatttagagaccaagtctcgctctgttacccaggctggagtgcagtgtcgtggcctcagctcactgtaacaacttccgcctccccggttcaagcgattctcctgccttggcctcccaaagtgctgggattacagacacccactaccatgcccagctaattttttgtgtttttagtaagtaaagacagggtttccccatcttggtcaggctggtctcaaactcctggcctcaagtgagccacccgcctcggtctcccaaagtgatgggattacaggcatgcgcgaccacacTGGcctaatgtgtagttttttatctgtggcctcccttccgccctcccccttctgagcctttgaagcccattacatcactctgcctttgtgtaccaacagcttagctcccactgagaacatacagagccaggcacggtggcggtggctcacgcctgtaatcccagcactttgggggtgctgaggcaggtgcatcacctgaggccaggagttcaagaccagtctggccaacatggtgaaaccccatctctaatgaaaatagaaaaatacatagctgggcgtggtggca------------------------ggaggctgaggttggtgaatcgcttgaacccaggaggcagaggttgcggtgagccaagatcacaccactgcactccagcctgggcaacaagagcgaaactgtctt----aaaaaaaaaaaaagtgagaacatatggattctactcctgttagaataatggcctccagctgcatccaagttgctggaaatgacattatttcattccttctaatggctgaataggattccatggtatatagacaccacgttttcctt
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e chlSab2.chr6               47531628  518 +  50890351 I
e rheMac3.chr19              60576452  548 +  64156825 I

a score=92713.000000
s hg38.chr19_GL949751v2_alt    837497 1031 +   1002683 atccactgtagggaccagccccacagggtcggtgggtctctccctgtgtgcggcgacgagagagtgtagaaataaagacacaagacaaagagacaagagaaaaggcagctgggcccgggggaccactaccaccaatgcgcggagaccggtagtggccccgaatgtctggctgcgctgttatttattggatacaaggcagaaggggcagggtaaagagtgtgagtcacctccaatgataggtaaggtcacgtgggtcacgtgtccactggacagggggcccttccctgcctggcagccgaggc--agagagggagaggagacagagagaaagacagcttacgccattatttctgcatatcagggactattagtactttccctaatttactactgctatctagaaggcagagccaggtgtacaggatggaacatgaaggcggactaggagcgtgaccaccgaagcacagcatcacagggagacggttaggcctccggataactgcgggcgagcctgactgatgtcaggccctccacaagaggtggaggagcagagtcttctctaaactcccccggggaaagggagacccc-cccccccacccgctgcccctttcccggtctgctaagtagcgggtgttgttaattgacaccttttgctaccgctggaccatgatccgcttggtgacgggtgtcttcccagacgctggcgtcaccgctagaccaaggagccctctggtggccctgtccgggcataacagaaggctcgcactcttgtcttctggtcacacctcactatgtcccctcagctcctatctctgtatggcctggtttttcctaggctatgattatagagtgaggattattataatattggaataaaaagtaattgctaccggctaatgattaatgatactcatatataatcatatctaagatctatatctggtataacaattcttgttttatattttattatactggaacagctcgtgtcctctgtctcttgcctcggtgcctgggtgccttgccgcccaca
s panTro4.chr19              59839380 1025 +  63644993 atccactgtagggaccagccccacagggttggtaggtctctccctgtgtgcggcgacgagagagtgtagaaataaagacacaagacaaagagacaagagaaaaggcagctgggcccgggggaccactaccaccaatgcgcggagaccggtagtggccccgaatgtctggctgcgctgttatttattggatacaaggcagaaggggcagggtaaagagtgtgagtcacctccattgataggtaa---------ggtcacgtgtccactggacagggggcccttccctgcctggcagccgaggcagagagagagagaggagacagagagagagacagcttacgccattatttctgcatatcagggactattagtactttcactaatttaccactgctatctagaaggcagagccaggtgtacaggatggaacatgaaggcggactaggagcgtgaccaccgaagcacagcatcacagggagacggttaggcctccggataactgcgggcaggtctgactgatgtcaggccctccacaagaggtggaggagcagagtcttctctaacctcccccggggaaagggagaccccacccacccacccaccgcccctttcccggtctgctaagtagcgggtgttgttaattgacaccttttgctaccactggaccatgatccgcttggtgacgggtgtcttcccagacgctggcgtcaccgctagaccaaggagccctctggtggccgtgtccgggcataacagaaggctcgcactcttgtcttctggtcacacctcactatgtcccctcagctcctatctctgtatggcctggtttttcctaggctatgattatagagtgaggattattataatattggaataaaaagtaattgctaccaactaatgattaatgatactcatatataatcacatctaagatctatatctggtataactattcttgttttatattttattatactggaacagctcgtgtcctctgtctcttgcctcggcacctgggtggcttgccgcccaca
i panTro4.chr19             C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e ponAbe2.chr19              56749060 2137 +  60714840 I
e calJac3.chr22              45879672 8977 +  49145316 I
e nomLeu3.chr10             103288989    0 - 106955855 C
e chlSab2.chr6               47531628  518 +  50890351 I
e rheMac3.chr19              60576452  548 +  64156825 I

a score=32747.000000
s hg38.chr19_GL949751v2_alt    838528 61 +   1002683 atccactcattattcaatgggcacttcggttggttccacatctttgcaattgtgaatGGCT
s panTro4.chr19              59840405 61 +  63644993 atccactcattattcaatgggcacttcggttggttccacatctttgcaattgtgaatGGCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56751197 61 +  60714840 atccactcattagtcaatgggcactttggttggttccacatctttgcaactgtgaatGGCT
i ponAbe2.chr19             I 2137 C 0
s nomLeu3.chr10             103288989 61 - 106955855 atccactcattagtcaatgggcacttcggttggttccacatctttgcaattgtgaatGACT
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45879672 8977 +  49145316 I
e chlSab2.chr6               47531628 518 +  50890351 I
e rheMac3.chr19              60576452 548 +  64156825 I

a score=652268.000000
s hg38.chr19_GL949751v2_alt    838589 293 +   1002683 GAGCcagccattcttaactgggggtgattttgtccccatgggggtatctggccacatcccgagagg-ttttttggttgtcacgagttgcagtggggg------caggctcaggctcat-------------ccaagtccaggggtgctgctatacatcacgtgatacacaggacagtccttgc-----------tacggactgaattggtcccaccaaacgtcatgtacaagcccta-ccccagatgtgactctatttggacacagggcttttcagaggtaattaagGCTGGTCAGGCGCC-------------GTAATCACAGCACTTTAGGAGTTC
s panTro4.chr19              59840466 293 +  63644993 GAGCcagccattcttaactgggggtgattttgtccccatgggggtatctggccacatcccgagagg-ttttttggttgtcacgagttgcagtggggg------cagcctcagactcat-------------ccaagtccaggggtgctgctatacatcacgtgatacacaggacagtccTtgc-----------tacggactgaattggtcccaccaaacgtcatgtacaagcccta-ccccagatgtgactctatgtggacacagggcttttcagaggtaattaagGCTGGTCAGGCGCC-------------GTAATCACAGCACTTTAGGAGTTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56751258 303 +  60714840 GAGCcagccattgttaactgggggtgattttgtccccatggggacatctggccacatcccgaga-g-ctttttggttgtcacgagttgcagtggggg------caggctcaggctcat-------------ccaagtccaggggcgctgctatacatcacgtgatacacaggacagtcctcactacagaCTGAAtacggactgaattggtcccaccaaacttcacgtacaagcccta-ccccagatgtgactctatttggacacagggcttttcagaggtaattaagGCTGGCCAGGTGCC-------------GTAATCACGGCACTTTAGGAGTTC
i ponAbe2.chr19             C 0 I 275
s nomLeu3.chr10             103289050 294 - 106955855 GAGCcagccattcttaactgggggtgattttgtccccatgggggcatctggccgcatcccgagaggtttttttggttgtcaggagttgcagtggggg------caggctcaggctcat-------------ccaagtccaggggtgctgctatacatcatgtgataca-aggacagtccTtgc-----------tacggactgaattggtcccaccaaacttcacgtacaagccctagccccagatgtcactatatttggccacagcgcttttcagaggtaattaagGCTGGCCAGGCGCG-------------GTAATCACAGCACTTTAGGAGTTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60577000 325 +  64156825 GAGCcagccattcttaacttggggtgattttgtccccatggggacatctggccatatcccgaga-g-cttttcggttgtcatgagttgcagtgggggcaggttcaggctcaggctcatggtgtctcctgggcaaagtccaggtgtgctgctatgcatcatgtggcacacagcacagtccTtgt-----------cacggtctgaattggtcctgccaaacttcacgtaaaagccctagccccaggtgtgactctatttggacacagggcttttcagaggtaattaaTGCTggccaggcaccgtggctcacgcctgtaatcacagcactttaggagTTC
i rheMac3.chr19             I 548 C 0
s macFas5.chr19              55703290 325 +  59248254 GAGCcagccattcttaacttggggtgattttgtccccatggggacatctggccatatcccgaga-g-cttttcggttgtcatgagttgcagtgggggcaggttcaggctcaggctcatggtgtctcctgggcaaagtccaggtgtgctgctatgcatcatgtggcacacagcacagtccTtgt-----------cacggtctgaattggtcccgccaaacttcacgtacaagccctagccccaggtgtgactctatttggacacagggcttttcagaggtaattaaTGCTggccaggcaccgtggctcacgcctgtaatcacagcactttaggagTTC
i macFas5.chr19             N 0 C 0
s papAnu2.chr19              47815908 325 +  51301725 gagcCAGCCATTCTTAACTTGGGGTGATTTTGTCCCCATGGGGACATCTGGCCACATCCCGAGA-G-CTTTTCGGTTGTCACGAGTTGCAGTGGGGGCAGGTTCAGGCTCAGGCTCATGGTGTCTCCTGGGCAAAGTCCAGGTGTGCTGCTATGCATCATGTGGCACACAGGACAGTCCTTGT-----------CACGGTCTGAATTGGTCCCGCCAAACTTCACGTACAAGCCCTAGCCCCAGGCGTGATTCTATTTGGACACAGGGCTTTTCAGAGGTAATTAATgctggccaggcaccgtggctcacgcctgtaatcacagcactttaggagttc
i papAnu2.chr19             N 0 C 0
s chlSab2.chr6               47532146 317 +  50890351 GAGCcagccattcttaacttggggtgattttatccccatggggacatctggccacatcccaaga-g-cttttcagttgtcacgagttgcagtggggg------caggctcaggctcacggtgtctgctgggcaaagtccaggtgtgctgctctgcaccatgtggcacacaggacagtccTtgt-----------cacggtctcaattggtcccgccaaacttcacgtacaagccctagccccaggtgtga--ctatttggacacagggcttttcagaggtaattaaTGCTggccaggcaccgtggctcacgcctgtaatcacagcactttaggagTTC
i chlSab2.chr6              I 518 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45879672 8977 +  49145316 I

a score=401729.000000
s hg38.chr19_GL949751v2_alt    838882 175 +   1002683 TGTGTTTATTACTGGTAAGTGGGTAAGAgcccagtgtggcagctcacgcgtgtaatcccagcactttgggaagcgaaggcaaggggataactggaggccagcagttcaagacaagcctggtcaatacagcaagactccatctctat--aaaatattttaaaattagccaagcatgtt
s panTro4.chr19              59840759 170 +  63644993 TGTGTTTATTACTCGTAAGTGGGTAAGAgcccagtgtggcagctcacgcgtgtaatcccagcactttgggaggcgaaggcaaggggataactggaggccagcagttcaagacaagcctggtcaatacagcaagactccatctct-------atattttaaaattagccaagcatgtt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56751836 175 +  60714840 TGTGTTTATTACTCATAAGTGGGTAACagcccagtgtggcagctcacgcgtgtaatcccagcactttgggaggctaaggcaaggggataactggaggccagcagttcaagaccagcctggtcaatacagcaagactccatctctat--aaaatattttaaaattagccaagcatgtt
i ponAbe2.chr19             I 275 C 0
s nomLeu3.chr10             103289344 174 - 106955855 TGTGTTTATTA-TCGTAAGTGGGTAAGAgcccagtgtggcagctcacgcgtgtaatcccagcactttgggaggctaaggcaaggggataactggagaccagcagttcaagaccagctgggtcaatacagcgagactccatctctat--aaaatattttggaatgagccaagcatgtt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60577325 175 +  64156825 TGTGTTTATTACTTATAAGTGGGTAAGAgcccagtgtggcagctcacacgtgtaatcccagcacttcgggaggctgaggcaaggggataacttgaggtcaggagttcaagaccagcctggtcaatacagcaagaccccatctctat--aaaacattttaaagttagccaggcatgtt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55703615 175 +  59248254 TGTGTTTATTACTTATAAGTGGGTAAGAgcccagtgtggcagctcacacgtgtaatcccagcacttcgggaggctgaggcaaggggataacttgaggtcaggagttcaagaccagcctggtcaatacagcaagaccccatctctat--aaaacattttaaagttagccaggcatgtt
i macFas5.chr19             C 0 I 157
s papAnu2.chr19              47816233 175 +  51301725 TGTGTTTATTACTTATAAGTGGGTAAGAGCCCAGGGTGGcagctcacacgtgtaatcccagcactttgggaggctgaggcaaggggataacttgagatcaggagttcaagaccagcctggtcaatacagcaagaccccatctctgt--aaaacattttaaagttagccaggcatgtt
i papAnu2.chr19             C 0 I 157
s chlSab2.chr6               47532463 177 +  50890351 TGTGTTTATTACTTATAAGTGGGTAAGAgcccagtgtggcagctcacacgtgtaatcccagcactttgggaggctgaggcaaggggataacttgagatcaggagttcaagaccagcctggtcaatacagcaaagccccatctctattataaacattttaaagttagccaggcatgtt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45879672 8977 +  49145316 I

a score=311275.000000
s hg38.chr19_GL949751v2_alt    839057 233 +   1002683 tggcatgcacctgtaatcccagc-------tcaggaggctcaggtgggaggattccttga--------gtttaaggctgcagtgagctaagatcgcaccattgcactccaacccggctgtgggcaacacagcACCACCACCATCTTggctgggcacggtggctcacgcctgtcatgccagcactttgggaggccgaggcggg-tggctcacctgaggtcaggagtttgagactagcctggccaacatgg
s panTro4.chr19              59840929 233 +  63644993 tggcatgcacctgtaatcccagc-------tcaggaggctcaggtgggaggattccttga--------gtttaaggctgcagtgagctaagatcgcaccattgcactccgacccggCTGTGAGGAACACAGCACCACCACCATCTTggctgggcacagtggctcatgcctgtcatgccagcactttgggaggccgaggcggg-tggctcacctgaggtcaggagtttgagactagcctggccaacatgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56752011 234 +  60714840 tggcatgcacctgtaatcccagc-------tcaggaggcttaggtgggaggattccttga--------gtttaaggctgcagtgagctaagatcataccattgcactccagcccagctgtgagcaacagagcACCACCACCATCTTggctgggcgtggtggctcacgcctgtcatcccagcactttggaaggccgaggcgggatgggtcacctgaggtcaggagtttgagactagcctggccaacatgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103289518 207 - 106955855 tggcatgcacctgtaatcccagc-------tcagggggctcagctgggaggcctccttga--------gtttaaggctgcagggagctaagatcgcaccatcgcactccaacccggctgtgagcaacagagcACCACCACCATCTTGGCTGGGCGTAGTGGCTCA--------------------------Accaaggcggg-tgggtcacctgaggtcagaagtttgagactagcctggccaacatgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60577500 247 +  64156825 tggcacgcacctgtaatcccagctacttactcaggaggctcaggtgggaggatcgcttga-cccgggagttcaaggctgccatgagctaagattgcaccattgcactccaacctggctgtgagcaacagagcaacaccactatctTgactgggcacagtggctcacgcctgtaatcccaacactttgggaggccgaggcagg-tgggtcacctgaggtcaggagtttgagaccaacctggccaacatgg
i rheMac3.chr19             C 0 I 126
s macFas5.chr19              55703947 216 +  59248254 tggctcacgcctgtaatcccaac-act---ttgggaggccgaggcaggtgggtcacctgaggtcaggagtttgagaccaacctg-gccaacatgg------tgaaaccccatct--ctactaaaaacataaaaa----------ttaactgggggtggtagcaggcacacgtaatccca--gatacgggaggctgaggcatg-agaatcacttgaacctgggagatggaggttacagtgagc-------
i macFas5.chr19             I 157 C 0
s papAnu2.chr19              47816565 216 +  51301725 tggctcacgcctgtaatcccaac-act---ttgggaggccgaggcaggtgggtcacctgaggtcaggagtttgagaccaacctg-gccaacatgg------tgaaaccccatct--ctactaaaaacataaaaa----------ttaactgggggtGGTAGCAGGCACACGTAATCCCA--gatacgggaggctgaggcatg-agaatcgcttgaacttgggagatggaggttacagtgagc-------
i papAnu2.chr19             I 157 C 0
s chlSab2.chr6               47532640 247 +  50890351 tggcacgcacctgtaatcccagctacttactcaggagtctcaggtgggaggatcgcttga-cccgggagttcaaggctgccatgagctaagattgcaccattgcactccaacctggctgtgagcaacagagcaacaccactatctTgactgggcacagtggctcacgcctgtaatcccaacactttgggaggccgaggcagg-tgggtcacctgaggtcaggagtttgagaccaacctggccaacatgg
i chlSab2.chr6              C 0 I 128
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45879672 8977 +  49145316 I

a score=194977.000000
s hg38.chr19_GL949751v2_alt    839290 105 +   1002683 tgaaatcacgccactgcactccagcctaggcaaccaagtgagactctgtcCGCCCCACCACCCCACCAAA--AA---AAAGACTACTATCTTAAACAAAATCAAAATTTT
s panTro4.chr19              59841162 102 +  63644993 tgaaatcacgccactgcactccagcctaggcaaccaagtgagactctgtcCGCCCCACCACCCCACCAAA--AA---AAAA---ACTATCTTAAACAAAATCAACATTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56752245 107 +  60714840 tgaaatcAcaccactgcactccagtctaggcaaccgagtcagactctgtcCACCCCACCACCCCACCAAAACAA---AAAAACTACCATCTTAAACAAAATGAAAATTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103289725 105 - 106955855 tgaaatcacgccactgcactccagcctaggcaaccgagtgagactctgtccaccccaccaaaaaaaaaaa--aa---aaaaaCTACCTTCTTAAACAAAATCAAAATTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60577873 107 +  64156825 tgagatcacgccattgcactccagcctgggcagccgagtgagaccctgtcCACCCCACCACCCCACCAAA--AAAATAAAACCTACCATCttaaataaaatcaaaa-ttt
i rheMac3.chr19             I 126 C 0
s macFas5.chr19              55704163  94 +  59248254 tgagatcacgccattgcactccagcctg-------------gacCCTGTCCACCCCACCACCCCACCAAA--AAAATAAAACCTACGATCTTAAATAAAATCAAAA-TTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47816781 103 +  51301725 tgagatcacgccattgcactccagcctgggcagccgagtgagaccctgtccaccccaccaccccaccaaa--aaaataaaacctaccatct----taaaatcaaaa-ttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533015 105 +  50890351 tgagatcacaccattgcactccagcctgggcaactgagtgagaccctgtcCACCCCACCACCCCACCAAA--AAA--AAAACCTACTATCTTAAATAAAATCAAAA-TTT
i chlSab2.chr6              I 128 C 0
e canFam3.chr1               19993539 8686 - 122678785 I
e calJac3.chr22              45879672 8977 +  49145316 I

a score=1033785.000000
s hg38.chr19_GL949751v2_alt    839395 457 +   1002683 TAAGTAGATAAAATATTTAGGGG-AAAAAAACTTCAAT--TAAATATGCAGC--AGAGTCCGACCCAGATGTTTTCACTCCCAGCCTCTACCTACTATCTTTGTGTCTTTATTTTTAGCAAATTCTACACGGGAACTTCATGTGCATGTAGAACCCTAAATGTTGACTCAGCCCTACCTCTCATCACCTGACCACTTCCTTT-ATTCACGC----TGTCTCTACCACCCTTCCCATCGG----------TGTGAGCTGTATCCCGCT-AAACACTGTTACCACCCACAGCC----TGCATTACTACCAGCTGACTGTAGCCTTAAACACCACAGTGATCTCGAGCATTTGAGAAGACTTATCTTGACAAGGGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGAGGGCCTTCATGGGATCATTCAGTG-----CTGAAGCCACTCAACCTCCAGGTTTGGGTTAGTAAAAAGAACTTTGT
s panTro4.chr19              59841264 454 +  63644993 TAAGTAGATAAAATATTTAGGGG-AAAAAAACTTCAAT--TAAATATGCAGC--AGAGTCTGACCCAGATGTTTTCACTCCCAGCCTCTACCTACTATCTTTGTGTCTTTATTTTTAGCAAATTCTACACGGGAACTTCATGTGCATGTAGAACCCTAAATGTTGACTCAGCCCTACCTCTCATCACCTGACCACTTCCTTT-ATTCACGC----TGTCTCCACCACCCTTCCCATCGG----------TGTGAGCTGTATCCCGCT-AAACACTGTT---ACCCACAGCC----TGCATTACTACCAGCTGACTGTAGCCCTAAACACCACAGTGATCTCGAGCATTTGAGAAGACTTATCTTGACAAGGGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGAGGGCCTTCATGGGATCATTCAGTG-----CTGAAGCCACTCAACCTCCAGGTTTGGGTTAGTAAAAAGAACTTTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56752352 455 +  60714840 TAAGTAGATAAAATATTTAGGGG-AAAAAAACTTCAAT--TAAATATGCAGC--AGAGTCCGACCCAGATATTTTCACTCCCAGTCTCTACCTACTATCTTTGTGTCTTTATTTTTAGCAAACTCTACACAGGAACTTCATGCGCATGTAGAACCCTAAATGTTGACTCGGCCCCACCTCTCATCACCTGACCACTTCCTTT-ATTCACGC----TGTCTCCACCACCCTTCCCATTGG----------TGTGAGCTGTATCCCACTAAAACACTGTT---ACCCACAGCC----TGCATTACTAGCTGCTGACTGCGGCCCTAAACACCATGGTGATCTCGAGCATTTGAGAAGGCTTATCTTGACAAGGGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGAGGGCCTTCATGGTATCATTCAGTG-----CTGAAGCCACTCAATCTCCAGGTTCGGGTTAGTAAAAAGAACTTTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103289830 454 - 106955855 TAAGTAGATAAAATATTTAGGGG-AAAAAAACTTCAAT--TAAATATGCAGC--AGAGTCCAACCTAGACGTTTTCACTCCCAGCCTCTACCTACTATCTTTGTGTCTTTATTTTTAGCAAATTCTACACAGGAACTTCATGCCCATGCAGAACCCTACATGTTGACTCAGCCCCACCTCTCATCACCTGACCACTTCCTTT-ATTCACGC----TGTCTCCACCACCCTTCCCATTGA----------TGTGAGCTGTATCCCACT-CAACACTGTT---ACCCACAGCC----TGCGTTACCACCAGCTGACTGTAGCCCTAAACAGCACGGCGACCTCGAGCATTGGAGAAGACTTATCTTGACAAGGGCTCACGAAAGACAGCAACGCTCAACAGCAAGATAAATGAGGGCCTTCATGGGATCATTCAGTG-----CCAAAGCCACTCAACCTTCAGGTTTGCGTTAGTAAGAAGAACTTTGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60577980 445 +  64156825 taagtaaataaaatatttaGGGGAAAAAAAACTTC------AAATATGCAGC----AATCTGACCCAAACGTTTTCACTCCCAGCCTCTACCTGCTATCTTTGTGTCTTTATTTTTAGCAAATTCTACACAGGAACCTCACGCCCATGTAGAACCGTAAATGTTGACTCAGCCCCACCTGTCATGCCTGGACCACTTCCTTT-ATTCACGCTCAGTGTCTCCACCACACTTCCCACTGA----------TGTGAACTGTATCCCACT-AAACA--GTT---ACCCGAAGTC----TGCATCACTACCAGCTGACTGTAGCCCTAAACACCATGGCGATCTCGAGCGTTTG---AGATTTATCTTGACAAGGGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGACAGCCTTCATGGTGCCATTCAGTG-----CTGACGCCACTCAACCTCCAGGCTTGGGTTAGT---AAGAACTTTGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55704257 448 +  59248254 TAAGTAGATAAAATATTTAGGGGAAAAAAAACTTC------AAATATGCAGC----AATCTGACCCAAACGTTTTCACTCCCAGCCTCTACCTGCTATCTTTGTGTCTTTATTTTTAGCAAATTCTACACAGGAACCTCATGCCCATGTAGAACCGTAAATGTTGACTCAGCCCCACCTGTCATGACTGGACCACTTCCTTT-ATTCACGCTCAGTGTCTCCACCACACTTCCCACTGA----------TGTGAACTGTATCCCACT-AAACA--GTT---ACCCAAAGTC----TGCATCACTACCAGCTAACTGTAGCCCTAAACACCATGGCGATCTCGAGCGTTTGAGAAGATTTATCTTGACAAGGGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGACAGCCTTCATGGTGCCATTCAGTG-----CTGACGCCACTCAACCTCCAGGCTTGGGTTAGT---AAGAACTTTGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47816884 447 +  51301725 taagtagataaaatatttagggg-aaaaaaacttc------aaatatgcAGC----AATCTGACCCAAACGTTTTCACTCCCAGCCTCTACCTGCTAtctttgtgtctttatttttagcAAATTCTACACAGGAACCTCATGCCCACATAGAACCGTAAATGTTGACTCAGCCCCACCTGTCATGCCTGGACCACTTCCTTT-ATTCACGCTCAGTGTCTCCACCACACTTCCCACTGA----------TGTGAACTGTATCCCACT-AAACA--GTT---ACCCAAAGTC----TGCATCACTACCAGTTGACTGTAGCCCTAAACACCATGGCGATCTCCAGCGTTTGAGAAGATTTATCTTGACAAGAGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGACAGCCTTCATGGTACCATTCAGTG-----CTGAAGCCACTCAACCTCCAGGCTTGGGTTAGCAAAAAGAActt---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533120 447 +  50890351 TAAGTAGATAAAATATTTAGGGG-AAAAAAACTTC-------AATATGCAGC----AATCTGACCCAGATGTTTTCACTCCCAGCCTCTACCTACTATCTTTATGTCTTTATTTTTAGCAAATTCTACACAGGAACCTCATGCCCATGTAGAACTGTAAATGTTGACTCAGCCCCACCTGTCATGACCGGACCACTTCCTTT-ATTCACGCTCAGTGTCTCCACCACACTTCCCACTGA----------TGTGAACTGTATCCCACT-AAACA--GTT---ACCCAAAGTC----GGCATCACTACCAGCTGACTGTAGCCCTAAACACCATGGCGATCTCGAGCGTTTGAGAAGATCTATCTTGACAAGGGCTCACGAAAGACAGCAATGCTCAACAGCAAGATAAATGACAGCCTTCATGGTGCCATTCAGTG-----CTGAAGCCACTCAACCTCCAGGCTTGGGTTAGTAAAAAGAACC--GT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20002225 441 - 122678785 taaataaataaaaattaaaaaaa-taaaaaaaataaaTACCCAATAATCAACATAGATTCTGACCCAGACGTTCTCAATCATA------ACCCACCATCACTATATTTGTATCTTAAAAAAA------AAAAAAGCTTTGTATTCACGTGGAGAC-----------CTCAGCCTCACCTCCAATATCTTGATCACTTCCTCTAAACCATACTCAATTCCTCCACCACGCATCTCCCTGAAATCCTCCCCTGT---CCACACCCTGGT-AAACCCAGTC---ATCTGAAAGCCTAGTAAGCTGATATCCACTGAGTGGAACACCAAATACTACAGCAGCTATGAGGGCTTGAGCACATTTATCCTGATAAGAG------------GGCAACACCAAATGGTGGAAGAAACCCGGTCCTTCCTGGAACAACCCAGTGGCTAAGTTAAGCCACAGGGTTCCCATCCTTGAG---GTAAGAAGACCCCTAT
i canFam3.chr1              I 8686 I 5603
e calJac3.chr22              45879672 8977 +  49145316 I

a score=516917.000000
s hg38.chr19_GL949751v2_alt    839852 233 +   1002683 CAggccaggcacagtggctcacgcctgtcatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagttcaagaccagcctggctaacatggtgaaacctcgtctttactaaaaatac--aaaaattagccaggcatggtgacgcacacctctagtctcagctactccggaggctgggacagaagactcacttgaacccaggaggcagaggttgtagtgagcc
s panTro4.chr19              59841718 232 +  63644993 CAggccaggcacagtggctcacgcctgtcatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagttcaaaaccagcctggctaacatggtgaaacctcgtctttactaaaaatac--aaaaattagccaggcatggtgacgcacacctctagtctcagctactccagaggctgggacagaagactcac-tgaacccaggaggcagaggttgtagtgagcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56752807 233 +  60714840 CAggccaggcgcagtggctcacgcctgtcatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagttcaagaccagcctggctaacatggtgaaacctcgtctctactaaaaatac--aaaaattagccaggcatggtggtgcacacctctagtcccagctgctcaagaggctgggacagaagactcacttgaacccaagaggtggaggttgcagtgagcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290284 233 - 106955855 CAggccaggcgcagtggctcatgcctgtcatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagttcaagaccagcctggctaacatggtgaaacctcgtctctactaaaaatac--aaaaactagccaggcatggtgacgcacacctctagtcccagctactcgagaggctgggacagaagactcacttgaagccaggaggtggaggttgcagtgagcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60578425 234 +  64156825 CAGCccaggcacagtggctcacggctgtcatcccagcactttgggaggccaaggcaggcaggtcacctgaggtcaggagttcgaaaccagcctggttaacacggggaaaccctgtctctattaaaaatacaaaaaaatcagccaggcgtggtggtgtacacctctagtcccagctactcaggaggctggggcagaagactcacttgaacccagcaggtggaggttgcagtgag-c
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55704705 234 +  59248254 CAGCccaggcacagtggctcacggctgtcatcccagcactttgggaggccaaggcaggcaggtcacctgaggtcaggagttcgaaaccagcctggttaacacggggaaaccctgtctctactaaaaatac-aaaaaatcagccaggcgtggtggtgtacacctctagtcccagctactcaggaggctgggacagaagactcacttgaacccaggaggtggaggttgcagtgagcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47817331 201 +  51301725 -------------------------tgtcatcccagcactttgggaggccaaggcaggcaggtcacctgaggtcaggagttcgaaaccagcctggttaacatggggaaaccctgtctctactaaaaatac-aaaaaatcagccaggcgtggtggcgtacacctctagtcccagctactcaggaggctgggacagaagACTCACttgca--------gtggaggttgcagtgagcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533567 234 +  50890351 CAGCccagacacagtggctcacggctgtcgtcccagcactttgggaggccaaggcaggcaggtcacctgaggtcagcagttcaaaaccagcctggttgacacggggaaaccctgtctctactaaaaatac-aaaaaattagccaggcatggtggcatacacctctagtcccagctactcaggaggctgggacagaagactcacttgaacccaggaggtggaggttgcagtgagcc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45879672 8977 +  49145316 I

a score=77741.000000
s hg38.chr19_GL949751v2_alt    840085 26 +   1002683 aagatcgcaccactgcactccagcct
s panTro4.chr19              59841950 26 +  63644993 gagatcgcaccactgcactccagcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753040 26 +  60714840 aagatcgcaccactgcactccagcct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290517 26 - 106955855 aagatcgcaccactgcactccagact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60578659 26 +  64156825 aagatcacaccactgcgctccagcct
i rheMac3.chr19             C 0 I 28
s macFas5.chr19              55704939 26 +  59248254 aagatcacaccactgcgctccagcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47817532 26 +  51301725 gagatcacaccactgcgctccagcct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533801 26 +  50890351 aagatcacaccactgcgctccagcct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45888649 26 +  49145316 Aagatgatgccactgcgctccagcct
i calJac3.chr22             I 8977 C 0
e canFam3.chr1               20002666 5603 - 122678785 I

a score=20425.000000
s hg38.chr19_GL949751v2_alt    840111 71 +   1002683 gggcgaca--gaggcaagact-ccatctcaaaaaaaaaaaaaaaaaaaaaaagaaaagaAAACTTTGTCATACA
s panTro4.chr19              59841976 61 +  63644993 gggcgaca--gaggcaagact-ccatctcaaaaaaaaaaaaaaaagaa----------aaaaCTTTGTCATACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753066 57 +  60714840 gggcaaca--gaggggagact-ccatctcaagaaaaaaaaaaag--------------aaaaCTTTGTCATACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290543 68 - 106955855 gggcgaca--gaggcaagact-caatctcaaaaaaaaaaaaaaaaaaaaaaaagg---aaaaCTTTGTCATACA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55704965 29 +  59248254 aggaaacagcgagaTAAAACTGTCATCTT---------------------------------------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47817558 29 +  51301725 aggaaacagtgAGTCAAAACTGTCATCTT---------------------------------------------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533827 29 +  50890351 aggaaacagcgagacAAAACTGTCATCTT---------------------------------------------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45888675 47 +  49145316 gggcgaca-------aagact-ccatctcaaaaaacaaaaacaaa-------------------CTGTCATATA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e rheMac3.chr19              60578685 28 +  64156825 I

a score=206857.000000
s hg38.chr19_GL949751v2_alt    840182 72 +   1002683 AGCTTTCAACCTAAAGCATTAGCCATATGCCCGTGTTTTTGTGCCTGGGACCATGACAACTTTCCCCATATC
s panTro4.chr19              59842037 72 +  63644993 AGCTTTCAACCTAAAGCATTAGCCATATGCCCGTGTTTTTGTGCCTGGGACCATGACAACTTTCCCCATATC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753123 71 +  60714840 AGCTTTCAACCTAAAGCATTAGCCATATGCCCGTG-TTTTGTGCCTGGGACCATGACAAATTTCCCCTTATC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290611 72 - 106955855 AGCTTTCAACCTACAGCATTAGCCATATGCCCATGTTTTTGTGCCTGGGACCATGACAACTTTCCCCATATC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60578713 72 +  64156825 AGCTTTCAACCTAAAGCATTAGCCATATGCCCTTGTTTTTATGCCTGGAACCGTGACAACTTCCTCCATATC
i rheMac3.chr19             I 28 I 304
s macFas5.chr19              55704994 72 +  59248254 AGCTTTCAACCTAAAGCATTAGCCATATGCCCTTGTTTTTGTGCCTGGAACCGTGACAACTTCCCCCATATC
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47817587 71 +  51301725 AGCTTTCAACCTAAAGCATTAGCCATATGCCCTTG-TTTTGTGCCTGGGACCATGATAACTTCCcatatatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533856 72 +  50890351 AGCTTTCAACCTAAAGCATTAGCCATATGCCCTTGTTTTTGTGCCTGGAACCATGGCAACTTCCCCCATATC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45888722 72 +  49145316 AGCTTTCAACCTAAAGCCTCGGCTATATGCCCTCGTTTCTGTGCCTGGGACCATGGCAACCTCCCCCGTATC
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I

a score=2497.000000
s hg38.chr19_GL949751v2_alt    840254 10 +   1002683 AATGCtctta
s panTro4.chr19              59842109 10 +  63644993 AATGCtctta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753194 10 +  60714840 AATGCTCtta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290683 10 - 106955855 AATGCTCGTA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55705067  6 +  59248254 ----tttttt
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47817658  5 +  51301725 -----aattt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47533928  2 +  50890351 --------CA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45888794 10 +  49145316 CATGTTCTTA
i calJac3.chr22             C 0 I 142
e canFam3.chr1               20002666 5603 - 122678785 I
e rheMac3.chr19              60578785 304 +  64156825 I

a score=291844.000000
s hg38.chr19_GL949751v2_alt    840264 185 +   1002683 ----ttttttttttttcgagacaag-agttttgctcttattgcccaggctggagtgcagtggcacaatctcagctcaccgcaaactccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatacaccaccccaccc----------ggctaattttgtatttttagtagagac
s panTro4.chr19              59842119 189 +  63644993 ttttttttttttttttcgagacaag-agttttgctcttattgcccaggctggagtgcagtggcacaatctcagctcaccgcaaactccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatacaccaccacaccc----------ggctaattttgtatttttagtagagac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753204 182 +  60714840 ------tttttttttttgagac-ag-agttttgcttgtattgcccaggctggagtgcagtggcacgatctcagcttaccgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctaggattacaggcatgcaccaccacaccc----------ggctaattttgtatttttagtagagac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290693 191 - 106955855 -------ttttttttttgagac-ag-agttttgctcttattgcccaggcaggagtgcagtgacgcgatctcggctcaccgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctggaactacaggcatgcaccaccacgcccggctaattttggctaattttgtatttttagtagagat
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55705073 188 +  59248254 tttttttttttttttttgagac-ag-agttttgctcttgttgcccaggctggagtgcaatgatgtgatctcagctcaccacaacctccacctcccaggttcaagcgattctcctgcctcagcctctcaagtacctgggattacaggcatgcaccaccacgccc----------agctaattttgtattgttagtagagac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47817663 188 +  51301725 ttatttattttttttttgagac-gg-agttttgctcttgttgcccaggctggagtgcaatggtgtgatcttggctcactgcaacttccgcctcccaggttcaagcgattctcctgcctcagcctctcgagtacctcggattaccggcatgcaccaccacatcc----------agctaattttgtattgttagtagagac
i papAnu2.chr19             C 0 I 2924
s chlSab2.chr6               47533930 178 +  50890351 Attttttttttttttttgagac-agtagttttgctcttgttgcccaggctagagtgcaatggtgtgatctcagctcaccacaacctccacctcccg---------gattctcctgcctcagc--ctcgagtacctgggattacaggcatgcaccaccacgccc----------agctaattttgtattgttagtagagac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45888804 142 +  49145316 I
e rheMac3.chr19              60578785 304 +  64156825 I

a score=27768.000000
s hg38.chr19_GL949751v2_alt    840449 23 +   1002683 ggggtttctccatgttgaggctg
s panTro4.chr19              59842308 23 +  63644993 ggggtttctccatgttgaggctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753386 23 +  60714840 ggggtttctccatgttgaggccg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103290884 23 - 106955855 ggggtttccccatgttgAAGCTG
i nomLeu3.chr10             C 0 M 471
s macFas5.chr19              55705261 22 +  59248254 -gggtttcttcatgttcaggctg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47534108 23 +  50890351 ggggtttcttcatgttcaggctg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45888804 142 +  49145316 I
e papAnu2.chr19              47817851 2924 +  51301725 I
e rheMac3.chr19              60578785 304 +  64156825 I

a score=57863.000000
s hg38.chr19_GL949751v2_alt    840472 84 +   1002683 gtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcgcctggc
s panTro4.chr19              59842331 84 +  63644993 gtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcgcctggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753409 84 +  60714840 gtctcgaactcctgacctcaagtgatccgcccacctcagcctccctaactgctgggattacaggcatgagccaccgcgcccggc
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55705283 61 +  59248254 gtctcgaactcccgacctcaggtgatccacccgcctcggcctgccaaagtgctggaatcac-----------------------
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47534131 84 +  50890351 gtctcgaactcccaacctcaggtgatccacccgcctcggcctgccaaagtgctgggatcacaggcgtgagccaccgcgcccggc
i chlSab2.chr6              C 0 I 1
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45888804 142 +  49145316 I
e nomLeu3.chr10             103290907 471 - 106955855 M
e papAnu2.chr19              47817851 2924 +  51301725 I
e rheMac3.chr19              60578785 304 +  64156825 I

a score=1325.000000
s hg38.chr19_GL949751v2_alt    840556 10 +   1002683 TGCTCTTA---TT
s panTro4.chr19              59842415 10 +  63644993 TGCTCTTA---TT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753493 13 +  60714840 cACTCTTATTCTT
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45888804 142 +  49145316 I
e nomLeu3.chr10             103290907 471 - 106955855 M
e chlSab2.chr6               47534215  1 +  50890351 I
e papAnu2.chr19              47817851 2924 +  51301725 I
e macFas5.chr19              55705344  0 +  59248254 C
e rheMac3.chr19              60578785 304 +  64156825 I

a score=26130.000000
s hg38.chr19_GL949751v2_alt    840566 97 +   1002683 AAAATAGTCTCATCACCTACCGCAAGCGTG-GAGAGCCAAGTGAGGAGAGGGGTCAGTCCCTTTTGGCAGCGCCTGGAAGCCAGTGCTAACATCATGG
s panTro4.chr19              59842425 97 +  63644993 AAAATAGTCTCATCACCTACCGCAAGTGTG-GAGAGCCAAGTGAGGAGAGGGGTCAGTCCCTTTTGGCAGCACCTGGAAGCCAGTGCTAACATCATGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753506 96 +  60714840 CAAATAGTCTCATCACCTGCCGCGAGTTTG-GAAAGCCAAGTGAGGAGAGGGGTCAGTCCCTTTTAG-GGGACCTGGAAGCCAGTGCTAACATCATGG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55705344 24 +  59248254 -----------------------aagcgtg----agcca----------------------------ccgcgcccg---gcc----------------
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45888946 96 +  49145316 aaaataattTCACC-CCTACCAAAAGTCTGCTGGAGTCAAGTGAGGAGAGGGATCCATCACTTTGGTCAGCACCTGGAAGCCAGTGCTAACGCAAAG-
i calJac3.chr22             I 142 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e nomLeu3.chr10             103290907 471 - 106955855 M
e chlSab2.chr6               47534215  1 +  50890351 I
e papAnu2.chr19              47817851 2924 +  51301725 I
e rheMac3.chr19              60578785 304 +  64156825 I

a score=55779.000000
s hg38.chr19_GL949751v2_alt    840663 33 +   1002683 TGACAACTT---TTCATTCTTAAGGAAAATTGCGGA
s panTro4.chr19              59842522 33 +  63644993 TGACAACTT---TTCATTCTTAAGGAAAATTGCAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753602 33 +  60714840 CGACAACTT---TTCATTCTTAAGGAAAATTGCGGA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60579089 33 +  64156825 TGACAACTT---GTCATTCTTAAGGAAAATTGTGGA
i rheMac3.chr19             I 304 C 0
s macFas5.chr19              55705368 33 +  59248254 TGACAACTT---GTCATTCTTAAGGAAAATTGTGGA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47534216 33 +  50890351 TGACAACTT---TTCATTCTTAAGGAAAATTGTGGA
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45889042 36 +  49145316 TGACAACTTTTCTTCGTTCTTAAGGAAAATTGCAGA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e nomLeu3.chr10             103290907 471 - 106955855 M
e papAnu2.chr19              47817851 2924 +  51301725 I

a score=534078.000000
s hg38.chr19_GL949751v2_alt    840696 281 +   1002683 ----------------------------------------------------------------------------------------GTGACTTCTATGCATTTTCTATGAATGACCAAATACAGGGTGTGGAAAAGCTGTGTTTGCCATGGCAATGGGAAGCCGAGAGAAACGGGGAGGCGAGAGAGACAGAGACATACACAGAGACTCCCAGAGACAGCCACAC------AGACTCACACAGAAAC---------------------AGACAGACAggctgggctcggtggctcacgcctgtaatcccaccactctgggaggctgaggcgggtagatcacctgaggtcaggagtccgagaacagcctggccaacattgtgaaaccccgtctct
s panTro4.chr19              59842555 281 +  63644993 ----------------------------------------------------------------------------------------GTGACTTCTATGCATTTTCTATGAATGACCAAATACAGGGTGTGGAAAAGCTGTGTTTGCCATGGCAATGGGAAGCCGAGAGAACCGGGGAagcgagagagacagagacatacacagagactcccagagacagccacac------agactcacacagaaac---------------------agaCAGACAggctgggcgcagtggctcacgcctgtaatcccaccactctgggaggctgaggcgggtggatcacctgaggtcaggagtccgacaacagcctggccaacattgtgaaaccccgtctct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753635 275 +  60714840 ----------------------------------------------------------------------------------------GTGACTTCTATGCATTTTCTATGAATAACCAAATACACGGTGTGGAAAAGCTGTGTTTGCCGTGGCAATGGGAAGCAGAGAGAACCAGGGAGGTG--------AGAGACATACACAGAGACTCCCAGAGACAGCCACGC------AGACTCACacagaaac-------------------agagacagacgggctgggcccggtggctcacgcctgtaatcccaccactctgggaggccgaggcgggtggatcacctggggtcaggagttcgagaacagcctggccaacattgtgaaaccccgtctct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291378 278 - 106955855 ----------------------------------------------------------------------------------------GTGACTTCTATGCGTTTTCTATG-ATGACCAAATACAGGGTGTGGAAAAGCTGTGTTTGCCATGGCAATGGGAAGCAGAGAGAACCGGGGAGGGG--agagacagagacatacacagagactcccagagacagcca--c------agactcacacagaaac-------------------agagatagacaggctgggcgcggtggctcacgcctgtaatcccaccactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacgttgtgaaaccctgtctct
i nomLeu3.chr10             M 471 C 0
s rheMac3.chr19              60579122 275 +  64156825 ----------------------------------------------------------------------------------------GTGGCTTCTATGCATTTTATATGAATGACCAAATACAGGGTGTGGAAAAGCTGTGTTTGCCATGGCAATGGGAAGC--AGAGAACCGGGGAGGCG--agagacagagacat--acagagactcccagagacagccacac------agactcacacagaaac---------------------agacacaCAggctgggtgcagcgactcacacctgtgatcccagcactccgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaacagcctgcccaacgttgtgaaaccccatctct
i rheMac3.chr19             C 0 I 420
s macFas5.chr19              55705401 271 +  59248254 ----------------------------------------------------------------------------------------GTGGCTTCTATGCATTTTATATGAATGACCAAATACAGGGTGTGGAAAAGCTGTGTTTGCCATGGCAATGGGAAGC--AGAGAACCGGGGAGGCg--agagacagagacat--acagagactcccagagacagccacac------agactcacacagaaac---------------------agacacacaggctgggtgcagcgactcacacctgtgatcccagcgctctgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaacagcctgcccaacgttgtgaaaccctct----
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47534249 268 +  50890351 ----------------------------------------------------------------------------------------GTGGCTTCTATGCATTTTATATGAACGACCAAATACAGGGTGTGGAAAAGCTATGTTTGCCATGGCAATGGGAAGCAGAGAGAACTGGGGAGGCG--AGAGACAGAGACATACACAGAGACTCCCAGAGACAGCCACAC------AGACTCACACAGAAAC---------------------AG----ACAggctgggcgcggcgactcacacctgtaatcccagcgctctgggaggccgaggcgggtggatcacctgaggtcaggagtctgagaacagcctgcccaac---gtgaaaccctct----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45889078 380 +  49145316 GTGGCTTTTTgttccctgactgggaattgaacctgggccgcagcagtgagagcactgcatcgtaaccactagaccaccagggaGCAGAGTGGCTTCTATGCATTTTCTATGAATGACCAAATACAG---GTGTAAAAGCTGTGTTTCCCAGGGCAATGGGAAGTAAAGAGAAGGCGGCAGGCG--------AGAGACAT--ACACAGACTCCcagagacagccacacagagatagagacacacggagacagagacacaacagagagacagagacagaCA-gccaggtccagtggctcacatctgtaatcccagcactttgggaggccgagacaggtgaatcac--aaggtcaagagatcgagaccatcctggtcagcatggtgaaaccccatctct
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e papAnu2.chr19              47817851 2924 +  51301725 I

a score=45664.000000
s hg38.chr19_GL949751v2_alt    840977 32 +   1002683 agtaagaatac-aaaaaattagccaggcatggt
s panTro4.chr19              59842836 32 +  63644993 agtaagaatac-aaaaaattagccaggcatggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753910 32 +  60714840 agtaagaacac-aaaaagttagctgggcatggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291656 33 - 106955855 agtaagaatacaaaaaaattagccaggcatggt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55705672 32 +  59248254 agaaagagtac-aaaaaattagccgggcatggt
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47534517 32 +  50890351 agaaagaatac-aaaaaattagcccggcatggt
i chlSab2.chr6              C 0 I 225
s calJac3.chr22              45889458 31 +  49145316 actaaaaatac--aaaaattagctggctatggt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e papAnu2.chr19              47817851 2924 +  51301725 I
e rheMac3.chr19              60579397 420 +  64156825 I

a score=140751.000000
s hg38.chr19_GL949751v2_alt    841009 151 +   1002683 ggcacagggctgtaattccggctactcggaaggctgaggcaggagaatcacttgaacctgggaggcgc-ggttgcagtgagctgagatcacgccattgcactccag---------catgggcgacaagagtgaaactccgtctcaaaaaaaa-aaacaaaaa
s panTro4.chr19              59842868 145 +  63644993 ggcacagggctgtaattccagctactcggaaggctgaggcaggagaatcacttgaacctgggaggcgcaggttgcagtgagctgagatcacaccattgcactccag---------catgggcgacaagagtgaaactctgtctcaaaaa--------aaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56753942 148 +  60714840 ggcacacgactgtaattccggctactcggaaggctgaggcaggagaatctcttgaacctggtaggcggaggttgcagtgagccgagatcacaccattgcgctccag---------catgggcgacaagagtgaaacgccgtctcaaaaaaaa-----aaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291689 154 - 106955855 ggcatacgactgtaattccggctactcggaaggctgaggcagaagaatctcttgaacctggtaggcggaggttgcagtgagccaagatcatgctattgcactccagcatgggcgacatgggcgacaagagtgaaactccatctcaaaaa--------aaaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55705704 144 +  59248254 ggcacatgcctgtaattccagctactcgggaggctgaggcaggagaatctcttgaacccaggaggcggaggttgcagtgagccgagatcacgccattgcactccag---------cctggggaac-agagagaaactccgtctcaaaaa--------aaaga
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45889489 150 +  49145316 ggtgtacgcctgtagtcccagctactcgggaggctgaggcaggacgatgacttgaacccgaaaggcagaggttgcagcgaac-actcctacgccactgcactccc----------cactggtgac-agagcgagactccatttcaaaaaagaaaaacaaaaa
i calJac3.chr22             C 0 I 3
e canFam3.chr1               20002666 5603 - 122678785 I
e chlSab2.chr6               47534549 225 +  50890351 I
e papAnu2.chr19              47817851 2924 +  51301725 I
e rheMac3.chr19              60579397 420 +  64156825 I

a score=5022.000000
s hg38.chr19_GL949751v2_alt    841160 15 +   1002683 aaaaaaacgaaaGAA----
s panTro4.chr19              59843013 15 +  63644993 gaaaaagagaaagaa----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56754090 15 +  60714840 gaaagaacagagaga----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291843 15 - 106955855 aaaaaaaaaaaagaa----
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55705848 19 +  59248254 aaaaaaagaaagagacagc
i macFas5.chr19             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45889639  3 +  49145316 I
e chlSab2.chr6               47534549 225 +  50890351 I
e papAnu2.chr19              47817851 2924 +  51301725 I
e rheMac3.chr19              60579397 420 +  64156825 I

a score=81774.000000
s hg38.chr19_GL949751v2_alt    841175 155 +   1002683 CAGAGAGA--------------CACATACAAAGACAGAGAT------AGAAACGCCCAGCGacag------agacacacacagagaaacacagacagacacagagacacacacacagaaacagacacagagacagagagacaaaaagacagacacagagaaacaa--agagagacacacagag---
s panTro4.chr19              59843028 131 +  63644993 CAGagaga--------------cacatacaaagacagagat------agaaacgcccagcgacag------agagacacac------------------------acacagaaacagacacagagacagagaaagagagacaaaaagacagacacagagaaacaa--agagagacacacagag---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56754105 135 +  60714840 cagagaga--------------cacatacaaagacagagatacagagaaaaacgcccagagacag------agagacacac------------------------agagaaacacagagaaagagacagacacagagagacacac--acagaaagagacaaaaag--acagagacacagagaa---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291858 124 - 106955855 cagagagacagagacaaagagtcacatacaaagacagagatacgga-gaaaacacccagagacag------agagacac--------------------------acagagaaacagacacagcgatag--------------------agacacagagaaacaa--agagagac----agag---
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55705867 133 +  59248254 cagagaga--------------cacatacagagacagagatac----agaaacgcccagagacagacgcacagagacacac------------------------aaagagac--agacacacacacagaaacagcgatagagacacagagagagagacaa------aaagagatacagagaa---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47820775 144 +  51301725 cagagaga--------------cacatacagagacagagatac----agaaagacccagagacagacacacagagacacac------------------------aaagagacagagacacacacacagaaacagtgatagagacacagagacagagaaagacagacaaagagatacagagaaaaa
i papAnu2.chr19             I 2924 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45889639   3 +  49145316 I
e chlSab2.chr6               47534549 225 +  50890351 I
e rheMac3.chr19              60579397 420 +  64156825 I

a score=6888.000000
s hg38.chr19_GL949751v2_alt    841330 26 +   1002683 acagagagagagagagacacaTACAC
s panTro4.chr19              59843159 26 +  63644993 acagagacagagagagacacaTACAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56754240 12 +  60714840 acaaagatagag--------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291982 14 - 106955855 acagagaga------------cacac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60579817 26 +  64156825 acagagaaacaaagagagacaCACAC
i rheMac3.chr19             I 420 C 0
s macFas5.chr19              55706000 16 +  59248254 ----------acagagagacacacac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47820919 15 +  51301725 -----------aagagagagacacac
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45889639  3 +  49145316 I
e chlSab2.chr6               47534549 225 +  50890351 I

a score=208243.000000
s hg38.chr19_GL949751v2_alt    841356 96 +   1002683 ACACACACAGAGAGTAGGAGGCGGCCCGTGGGAGCCGAGCAGAACCAGCGTGAGGCAGGGCCATCTTCTGAATTAAAGGCAACAGTGACTGTAAGC
s panTro4.chr19              59843185 95 +  63644993 ACACACACAGAGAGTAGGAGGCGGCCCGTGGGAGCCAAGCAGAACCCGCGTGAGGCAGGGCCATCTTCTGAATTAAAGGCAAC-GTGACTGTAAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56754252 89 +  60714840 -------TAGGGAGTAGGAGCCGGCCCGTGGGAGCCAGGCAGAGCCGGCGTGAGGCACGGCCATCTTCTGAATTAAAGACTGCAGTGACTGTAAGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103291996 96 - 106955855 acacacagggagagTAGCAGCCAGCCCGTGGGAGCCAGGCAGAGCCGGCGTGAGGCAGGGCCATCTTCTGAATTAAAGGCAATAGTGACTGTAAGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60579843 96 +  64156825 ACACACACAGAAAGTAGGAGCCGGCCCGTCGGAGCCAGGCAGAGCCAGTGTGAGGCAAGGCCATCTTCTGAATTAAAGGCAACAGTGCCTGGAAGC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55706016 96 +  59248254 acacacaCAGAAAGTAGGAGCCGGCCCGTAGGAGCCAGGCAGAGCGAGTGTGAGGCAAGGCCATCTTCTGAATTAAAGGCAACAGTGCCTGGAAGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47820934 96 +  51301725 acacacacagaaagtaGGAGCCGGCCCGTAGGAGCCAGGCAGACCCAGTGTGAGGCAAGGCCATCTTCCGAATTAAAGGCAACAGTGCCTGGAAGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47534774 96 +  50890351 acaCACACAGAAAGTAGGAGCCGGCCCGTAGGAGCCAGGCAGAGCCAGTGTGAGGCAAGGCCATCTTCTGAATTAAAGGCAACAGTGCCTGTAAGC
i chlSab2.chr6              I 225 C 0
e canFam3.chr1               20002666 5603 - 122678785 I
e calJac3.chr22              45889639  3 +  49145316 I

a score=715126.000000
s hg38.chr19_GL949751v2_alt    841452 325 +   1002683 TTGTGCTTTGTGAGTAACAGGATAGATTAGAACA-GGGCTGGCTGCCCATGGCCCACGAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGTGCCAGCCAGGCC---------------CTGCgctgcttccatg-------------tccaaaggcacagctgagagctgatg----agagaccgcggggcccacagtgccaagcatatgaactatctggccc------------gttTGTCAATGCGTGGGTTGATCACATAAGTTATGATCACATAAGTCACAAAGA--------CACACTGATCACATAGATGC-ACCTGGCAGATAG-----TAGACCACATGGCGCCTGAGTTAGGGAAGAA--------AAGAAATAGAAGAATCAACCGAA
s panTro4.chr19              59843280 324 +  63644993 TTGTGCTTTGTGAGTAACAGGATAGATTAGAACA-GGGCTGGCTGTCCATGGCCCACGAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGTGCCAGCCAGGCC---------------CTGTGCTGCTTCCATG-------------TCCAAAGGCACAGCTGAGAGCTGATG----AGAGA-CGCGGGGCCCACAGTACCAAGCATATGAACTATCTGGCCC------------GTTTGTCAATGGGTGGGTTGATCACATAAGTTATGATCACATAAGTCACAAAGA--------CACACTGATCACATAGATGC-ACCTGGCAGCCAG-----TAGACCACGTGGTGCCTGAGTTAGGGAAGAA--------AAGAAATAGAAGAATCAACCGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56754341 318 +  60714840 TTGTGCTTTGTGAGTAACGGGATAGATTAGAACA-GGGCTGGCTGCCCATGGCCCACGAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGTGCCAGCCAGGCC---------------CTGTgctgcttccatg-------------tccaaaggcacagctgagcgctgatg----agagaccgtggggcccacagtgccaagcatattaactatctggccc------------gttTGTCAATGCATGGGT--------TAGGATATGAGCACATAAGTCACAAAGA--------CACACTGATCACACAGATGC-ACCAGACAGCTAGCAAACTAGACCAAGTGGTGTCTGAGTTAGGGAAG------------GACATAGAAGAATCAACCGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103292092 318 - 106955855 GTGTGCTTTGCAAGTAACAGGATAGATTAGAACA-GGGCTGGCTGCCCATGGCCCACGAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGCCCCAGCCAGACC---------------CTGCgctgcttccatg-------------tccaaaggcacagctgagagctgatg----agagaccacggggcccacagtgccacgcatattaactatctggccc------------gttTGTCAATGCATGGCT--------TAGGATATGAGCAAATAAGTCACAAAGA--------CATACTGATCACATAGATAC-ACCAGGCAGCTAGTAAACTAGACCAAGTGGTGCCCGAGTTAGGGAAG------------AAAATACAAGAATCAACGGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60579939 343 +  64156825 TTGT--TTCGTGGGTAACAGGATGGATTAGAACA-GGGTTGGCTGCCCGTGGCCCTCAAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGTGTGagccaggcccttggcacggatcatctgcactgcttccgtg-------------tacaaaggcacagctgagagctgatg----agagaccacggggcccacggtgccaagcatattaactatctggccc------------gttTGTCAACACGTGGGT--------TAGGATATGATCAAATAAGTCACAAAGA--------CACACCGATCACATAGATGC-ACCAGGCAGTTAGTAAACTAGACCAAGGGGTGCCTGAGTTAGAGAAAAAAAAGAAATAAGAAATAGAAGAATCAACAGAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55706112 336 +  59248254 TTGT--TTCGTGGGTAACAGGATGGATTAGAACA-GGGTTGGCTGCCCGTGGCCCTCAAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGTGTGagccaggcccttggcacggatcatctgcactgcttccgtg-------------tacaaaggcacagctgagagctgatg----agagaccacggggcccacggtgccaagcatattaactatctggccc------------gttTGTCAACGCGTGGGT--------TAGGATATGATCAAATAAGTCACAAAGA--------CACACCGATCACATAGATGCAACCAGACAGTTAGTAAACTAGACCAAGGGGTGCCTGAGTTAGGGAAGAA--------AAGAAATAGAAGAATCAACAGAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47821030 335 +  51301725 TTGT--TTCATGGGTAACAGGATGGATTAGAACA-GGGTTGGCTGCCCGTGGCCCTCAAGCTGTTTCTGG----------------------GAAGCCTCCGCAGGTGTGAGCCAGGCCTTTGGCACAGATCATCTGCACTGCTTCCGTG-------------TACAAAGGCACAGCTGAGAGCTGATG----AGAGACCACGGGGCCCACAGTGCCAAGCATATTAACTATCTGGCCC------------GTTTGTCAACGCGTGGGT--------TAGGATATGCTCAAATAAGTCACAAAGA--------CACACTGATCACATAGATGC-GCCAGGCACTTAGTAAACTAGACCAAGGCGTGCCTGagttagagaagaa--------aagaaatagaagaatcaACAGAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47534870 331 +  50890351 TTGT--TTCGTGGGTAACAGGATGGATGAGAACA-GGGTTGGCTGTCCGTGGCCCTCAAGCTGTTTCTGG----------------------GAAGCCTCCACAGGTGCGAGCCAGGCCCTTGGCACAGATCATCTGCActgcttccgtg-------------tacaaaggcacagctcagagctgatg----agagaccacggggcccacagtgccaagcatattaactatctggccc------------gttTGTCAACACGGGGGT--------TAGGATACGATCAAATAAGTCACAAAGA--------CACACCAATCACATAGATGC-ACCAGGCAGTTAGTAAACTAGACCAAGGGGTGCCTGAGTTAGAGAAGAA------------AATAGAAGAATCAACAGAA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20008269 390 - 122678785 TTGTCCTTCATAAGTAACAGAAGAGATTAGAAcaggggttggcaaactatggcccatgggccaaagctggcctattgcctatttttataaataaagttttattggaacacagccatacc--------cattcatttgcgtattgtctatggctctttgcacactacaacagcaaagt--ggaattgtcgtaacagtgaccatacagcttacag-acctaaaatattagctatctggctctttacagaaaaagttAACTACCTTCTGGGA--------TAGAATATCCTAAAACTAGTTAAGGAGGCCACAGACCACACTGATCATGTAGACTC-ATCAGACAACTTTTAAATTTAGCCAAGTAATACCTGAGCTAGGGCAAAA----AAAAAAAAAGAAAGAAAACCAACATAA
i canFam3.chr1              I 5603 C 0
e calJac3.chr22              45889639   3 +  49145316 I

a score=1416875.000000
s hg38.chr19_GL949751v2_alt    841777 458 +   1002683 TCATCCCTGAACTTCTTAGCAATACTTCCTCCTAGACAAAGCA--CAGAGTACCATGTTTA-TTGCAGGTTTGCTCCTGAGCATGTCAATAAACGCAGCTGCAACGAGAGTGCTCTAAC--TTTATTA---------TCCCTGTGAGAAAGTACATAGCGTCATGTGAAGGGGGTGCGTGACTCGTGCAGAATCTCCCAAAAA-TAGTGAGAAAACCAGTGTCAAATCCTACCTCTCGAC--AGACTCTAGTGTTAACATGTGACCCTCTGACCTGCATTCATAAGACATCTTAGAG--ACCCGAATCCCGCTTC---CTGTGTAATTCGTAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACGGAGGTGCCGTTGCCCCGGAAGCATTGCAATCAATAGTCAGCTTGGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGATTTCCAAATTAGTTTCATAGGTCTTCA
s panTro4.chr19              59843604 460 +  63644993 TCATCCCTGAACTTCTTAGCAATACTTCCTCCTAGACGAAGCA--CAGAGTACCATGTTTA-TTGCAGGTTTGCTCCTGAGCATGTCAATAAACGCAGCTGCAGCGAGAGTGCTCTAAC--TTTATTA---------TCCCTGTGAGAAAGTACATAGCGTGATGTGAAGGGGGTGCGTGACTCGTGCAGAATCTCCCAAAAA-CAGTGAGAAAACCAGTGTCAAATCCTACCTCTCGACATAGACTCTAGTGTTAACATGTGACCCTCTGACCTGCATTCATAAGACATCTTAGAG--ACCCGAATCCCGCTTC---CTGTGTAATTCGTAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACGGAGGTGCCGTTGCCCCGGAAGCATTGCAATCAATAGTCAGCTTGGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGACTTCCAAATTAGTTTCATAGGTCTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56754659 460 +  60714840 TCATCCCTGAACTTCTTAGCAATACTTCTTCCTAGACTAAGCA--CAGAGTACCATGTTTA-TTGCAGGTTTGCTCTTGAGCATGTCAATAAACGCAGCTGCAACGAGCGTGCTCTAAC--TTTATTA---------TCCCTTTGAGAAAGTACATAGCGTGATGTGAAGGGGGTGCGTGACTTGTGCAGAATCTCCCACAAA-CAGTGAGAAAACCAGTGTCAAGTCCTACATCTTGACACAGACTCTAGTGTTAACATGTGACCCTCTGACCTGCATTCCTAAGACATCTTAGAG--ACCCAATTCCCGCTTC---CTGTGTAACGCGTAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACCGAGGTGCCATTGCCCCGGAAGCATTGCAATCAATAGTCAGCTTCGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGATTTCCAAACTAGTTCCATAGCTCTTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103292410 457 - 106955855 TCATCCCTGAACTTCTTAGCAACACTTCCTCCTAGACTAAGCA--CAGAGTACCATATTTA-TTGCAGGTTT-CTCTTGAGCATGTCAATAAACGCAGCTGCAACGA--GTGCTCTAAC--TTTATTA---------TCCCTGTGAAAAAGTACATAGCGTGATGTGAAGGGGGTGCGTGACTGGTGCAGAATCTCCCAAAAA-CAGTGAGAAAACCAGTGTCAAATCCTATATCTTGACACAGACTCTAGTGTTAACATGTGACCCTCTGACCTGCATTCATAAGACACCTTAGAG--ACCCGATTCCCGCTTC---CTGTGTAATTCACAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACGGAGGTGCCGTTGGCCCAGAAGCATTGCAATCAATAGTCAGCTTCGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGATTTCCAGATTAGTTTCATAGGTCTTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60580282 458 +  64156825 TCATCCCTGAACTTCTCAGCGATACTTCTTCCTAGACTAAGCA--CAGAGTAGCATGTTTA-TGGCAGGTTTACCCTTGAGCATGTCAATAAACGCAGCTGCAACGAGAGTGCTC--AC--TTTATTA---------TCCCTGTGAGAAGGTGCGTAGTGTGATGTGAAGGGGGTGTGTGACTTGTGCAGAATCTCCCACAAA-CAGTGAGAAAACCAGTGTCAAATTTGACATCTTGACACAGACTCTAGTGTTAACACGTGACCCTCTGACCTTCATTCACAAAATATCTTGGAG--ACCAGATTCCCGCTTC---CTGTGTAATTCGTAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACGCAGGTGCCGTTGCCCCGGAAGCATTGCAATCAATTGTCAGCTTAGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGATTTCCAAATTAGTTTCATAGGTCTTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55706448 458 +  59248254 TCATCCCTGAACTTCTCAGCAATACTTCTTCCTAGACTAAGCA--CAGAGTAGCATGTTTA-TGGCAGGTTTACCCTTGAGCATGTCAACAAACGCAGCTGCAACGAGAGTGCTC--AC--TTTATTA---------GCCCTGTGAGAAGGTGCGTAGTGTGATGTGAAGGGGGTGTGTGACTTGTGCAGAATCTCCCACAAA-CAGTGAGAAAACCAGTGTCAAATTTGACATCTTGACACAGACTCTAGTGTTAACACGTGACCCTCTGACCTTCATTCACAAAATATCTTGGAG--ACCAGATTCCCGCTTC---CTGTGTAATTCGTAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACGCAGGTGCCGTTGCCCCGGAAGCATTGCAATCAATTGTCAGATTAGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGATTTCCAAATTAGTTTCATAGGTCTTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47821365 458 +  51301725 TCATCCCTGAACTTCTCAGCAATACTTCTTCCTAGACTAAGCA--CAGAGTAGCATGTTTA-TGGCAGGTTTACCCTTGAGCATGTCAATAAATGCAGCTGCAATGAGAGTGCTC--AC--TTTATTA---------TCCCTGTGAGAAGGTGCGTAGTGTGATGTGAAGGGGGTGTGTGACTTGTGCAGAATCTCCCACAAA-CAGCAAGAAAACCAGTGTCAAATTTGACATCTTGACACAGACTCTAGTGTTAACACGTGACCCTCTGACCTTCATCCACAAAATATCTTAGAG--ACCAGATTCCCGCTTC---CTGTGTAATTCGTAGAG-CGATCCCAGGCTGCTCAGCaaaaaaaGTCACAGCACGGAGGTGCCGTTGCCCCGGAAGCATTGCAATCAATTGTCAGCTTAggattcttttctttcacttcctcCAACAGCTTCTTGATTTCCAAATTAGTTTCATAGGTCTTCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47535201 458 +  50890351 TCGTGCCTGAACTTCTCAGCAATACTTCTTCCTAGACTAAGCA--CAGAGTAGCATGTTTA-TGGCAGGTTTACCCTTGAGCATGTCAATAAACGCAGCTGCAACGAGAGTGCTC--AC--TTTATTA---------TCCCCGTGAGAAGGTGCATAGTATGATGTGAAGGGGGTGTGTGACTTGTGCAGAATCTCCCACAAA-CAGCGAGAAAACCAGTGTCGAATTCGACATCTTGACACAGACTCTAGTGTTAACACGTGACCCTCTGACCTTCATTCACAAAATATCTTAGGG--ACCAGATTCCCGCTTC---CTGTGTAATTCGTAGAG-CGATCCCAGGCTGCTCAGCAAAAAAAGTCACAGCACGCAGGTGCCGTTGCCCCGGAAGCACTGCAATCAATTGTCAGCTTAGGATTCTTTTCTTTCACTTCCTCCAACAGCTTCTTGATTTCCAAATTAGTTTCATAGGTCTTCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45889642 438 +  49145316 TCATCCCTGAACTTCTTAGTAGT-----TTCCTAGACTGAGCA--CAAAGCACTGTATGTA-CTGCAGGTTTGCTCTTGGGCACGTCAATAAA--CAGCTCCAACGAGAATGCTCCAACTTTTTATTA---------TCCCGGTGAGAAAGTGCACAGCATGAAGTGAAGGGCGTGCGTGGCTTCTGCAGAATCTCCCACGAA-CAGCGAGAAAAGCAGTGTCAAGTCCTGC-----------------AGAGTTAACATGTGACCCTCTGACCCACATTCATACGGTATCTTAGAG--ACCAGATTCCCACTTC---TCATGTAATTCGTATGG-CAATCCCAGCCTGCTCAGCAAAAAGAGTCACAGCACCCAGGTGCGGCCTCCCCGGAAGCATCGCAGTCAATCGTCAGCTTGGGATTCTTTCCTTTCACTTCCTCCAGCAGCTTCTCGATTTCCAAACTAGTGTCATAGGTCTTCA
i calJac3.chr22             I 3 C 0
s canFam3.chr1               20008659 470 - 122678785 CCATCTATGAACTT---AGTAGTATTTTTTCCTAGACTAAGTATGCCAAGTATAAAGTTAACCCTTAAGTTAGGTCTTAGGTACATTAATAAGCACAGTTTCAAACAAAGTTCTTTGCT--TTTACTATAGCTTGTGTCCTTGTGAAATAACAGACATTTTGACATAAAGTACGTGTGTGACTTGTGCAGAATTTACCATAAACCAGAGAGAAAGCCAGCACTAAATGCTACATTTTGACCCA------ATAATTAACATATTACCCTCTGGTCTTCATTCGTGGTGTGTCTAAGAGAAATAAGATCACCCCTTCAAGACACATAGTCACTAAAGATGGTCTCAGGGTGTTCAAGACAGGAAGTCACAACATGGAGACCTGCTTGCTCTGGCATCACTGCATTCAATGGTCAGATCTGGATTGTGGCCTTTCACATCTTTCAGCAGCTTCTGGATTTCCACGCTAGACTTGTCTATCTCCA
i canFam3.chr1              C 0 C 0

a score=87095.000000
s hg38.chr19_GL949751v2_alt    842235 32 +   1002683 ACCTGGAGGGATCAGAGAACACAAATGTTCCC--------------------------
s panTro4.chr19              59844064 32 +  63644993 ACCTGGAGGGATCAGAGAACACAAATGTTCCC--------------------------
i panTro4.chr19             C 0 I 26
s ponAbe2.chr19              56755119 32 +  60714840 ACCTGGAAGGATCAGAGAACACAAATGTTCCC--------------------------
i ponAbe2.chr19             C 0 I 142
s nomLeu3.chr10             103292867 32 - 106955855 ACCTGGAGGGATCAGAGAACACAAATGTTCCC--------------------------
i nomLeu3.chr10             C 0 I 26
s rheMac3.chr19              60580740 32 +  64156825 ACCTGCAGGGATCAGAGAACACAAATGTTCCC--------------------------
i rheMac3.chr19             C 0 I 26
s macFas5.chr19              55706906 32 +  59248254 ACCTGCAGGGATCAGAGAACACAAATGTTCCC--------------------------
i macFas5.chr19             C 0 I 26
s papAnu2.chr19              47821823 32 +  51301725 ACCTGCAGGGATCAGAGAACACAAATGTTCCC--------------------------
i papAnu2.chr19             C 0 I 26
s chlSab2.chr6               47535659 32 +  50890351 ACCTGCAGGGATCAGAGAACACAAATGTTCCC--------------------------
i chlSab2.chr6              C 0 I 26
s calJac3.chr22              45890080 57 +  49145316 GCCTGGA-GGATCAGAGAACACAAATGTTTGCAGAGCGCCTACAGTTTCACTGTCCCA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C

a score=773357.000000
s hg38.chr19_GL949751v2_alt    842267 323 +   1002683 AGAAATTCATTCTCAACTACCCAGGATGCCTGAATATCTGTTTTCAAACACTCAAAGCAGGAAACGTTTTTGGGAttttct-gggggacagggtct-----tgctctgttgcccaggctggggtacagtggtgccatcttggctctctgcaacctccagctcccaagttcaagcaattctcatgcctcaggctcctgagtaactgtgattacaggtgtgcaccaccacgcttggctaagtt---ttgta-------tttacagt-----------------------agagatggggtttcgacatgttagccaggctgg-------------------------------tctcgaacttctggcctcaagtgatccatccacctcggcctc
s panTro4.chr19              59844122 324 +  63644993 AGAAATTCATTCTCAACTACCCAGGATGCCTGAATATCTGTTTTCAAACACTCAAAGCAGGAAACGTTTTTGGGATTTTCTGGGGGgacagggtct-----tgctctgttgcccaggctggggtacagtggtgccatcttggctctctgcaacctccagctcccaagttcaagcaattctcatgcctcaggctcctgaataactgtgattacaggtgtgcaccaccacgcttggctaagtt---ttgta-------tttacagt-----------------------agagatagggtttcgacatgttagccaggctgg-------------------------------tctcgaacttctggcctcaagtgatccatcgacctcggcctc
i panTro4.chr19             I 26 C 0
s ponAbe2.chr19              56755293 323 +  60714840 AGAAATACATTCTCAACTACCCAGGATGCCTGAATATCTGTTTTCAAACACTC-AATCAGGAAACGTTTTTGGGATCTTCTGCGGGgacagggtct-----tgctctgttgcccaggctggggtgcagtggtgccatcttggctctctgcaacctccagctcccaagttcaagcgattctcatgcctcaggctcctgagtaactgtgattacaggtgtgcaccaccacactcggctaagtt---ttgta-------tttacagt-----------------------agagacggggtttcgacatgttagccaggctgg-------------------------------tctcaaacttctggcctcaagtgatcagtccacctcggcctc
i ponAbe2.chr19             I 142 C 0
s nomLeu3.chr10             103292925 324 - 106955855 AGAAATTCATTCTCAACTAACCAGGATGCCTGAATATCTGTTTTCAAACACTCAAAGCAGGAAACGTTTTTGGGATTTTCTGGGGGgacagggtct-----tgctctgttgcccaggctggggtacagtggtgccattttggctctctgcaacctccagctcctgagttcaagcaattctcatgcctcaggctcctgagtaactgtgattacaggtgtgcaccaccacgctcggctaagtt---ttgta-------tttacagt-----------------------acagatggggtttcaacacgttagccaggctgg-------------------------------tctcgaacttctggcctcaagtgatccgtccacctcggcctc
i nomLeu3.chr10             I 26 C 0
s rheMac3.chr19              60580798 328 +  64156825 AGAAATTCATTCTCAACTACCCAGGATGCCTGAACATCTGTCTTCAAACACTCAAAGCAGGAAACGTTTTTGGGATTTT-TGGGGGGACAGGTTCTGGCTCTgctctgttgcccaggctggggtgcagtggtgccatcttggctctccgcaacctccaggtcccaggctaaagcgactctcatgccttagcctcctgagtaacggggattacaggtgtgcaccatcacgcttggctaagtt---ttgca-------tttacagt-----------------------agagatggcgtttcgacatgttagccaggctgg-------------------------------tctcgaacttctggcctcgagtgatccatccccctcggcctc
i rheMac3.chr19             I 26 C 0
s macFas5.chr19              55706964 328 +  59248254 AGAAATTCATTCTCAACTACCCAGGATGCCTGAACATCTGTCTTCAAACACTCAAAGCAGGAAACGTTTTTGGGATTTT-TGGGGGGACAGGTTCTGGCTCTgctctgttgcccaggctggggtgcagtggtgccatcttggctctccgcaacctccaggtcccaggttcaagcgactctcatgccttagcctcctgagtaacggggattacaggtgtgcaccatcatgcttggctaagtt---ttgca-------tttacagt-----------------------agagacggcgtttcgacatgttagccaggctgg-------------------------------tctcgaacttctggcctcgagtgatccgtccacctcggcctc
i macFas5.chr19             I 26 C 0
s papAnu2.chr19              47821881 346 +  51301725 AGAAATTCACTCTCAACTACCCAGGATGCCTGAACACCTGTTTTCAAACACTCAAAGCAGGAAACATTTTTGGGATTTT-TGGggggacagggtctggctctgctctgtggcccaggctggggtgcagtggtgccatcttggctctctgcaacctccaggtcccaggttcaagcgactctcatgccttagcctcc----taacagggattacaggtgtgcaccatcacgcttggctaagtt---tt-ta-------tttACAGGCTAAGTTTTGTAAATGCCGCCTAAGAGGTGGcatttcaacatgttagccaggctgg-------------------------------tctcgaacttctggcctcgagtgatccgtccacctcggcctc
i papAnu2.chr19             I 26 I 1232
s chlSab2.chr6               47535717 328 +  50890351 AGAAATTCACTCTCAACTACCCAGGATGCCTGAACACCTGTTTTCAAACACTCAAAGCAGGAAACGTTTTTGGGATTTT-GGGGAGGACAGGGTCTGGCTCTgctctgttgcccaggctggggtgcagtggtgccatcttggctctctgcaacctccaggtcccaggttcaagcgattctcatgtcttagcctcctgagtaacagggattacaggtgtgcgccaccacgcttggctaagtt---ttgta-------tttatagt-----------------------agaggcggcgtttcgacatgttagccaggctgg-------------------------------tctcgaacttctggcctcgagtgatccgtccacctcggcctc
i chlSab2.chr6              I 26 C 0
s calJac3.chr22              45890137 306 +  49145316 AGAAATTCA--CTCAGTTACCCAGGATGCCTGAATATGTTTTCttg---------------------tttcgttgttttttttagagacagggttt-----caccatgttagccaggatgg-------------------------tcccgatctactgacctcagg--------atccgcctgcctcagcctcccaaaattctgggattacaggcatgagccactgcgcccagcaggattcacttataaagctgcttcactgt--------------------------gactggttgtggccacaatgcccaggctggagtacaatggtgccatcttgactcactgcaacctccagttcctgggttcgagtgattctcatgcctcagcctc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C

a score=67054.000000
s hg38.chr19_GL949751v2_alt    842590 31 +   1002683 ccaaagccatgggattacagatgtgagccac
s panTro4.chr19              59844446 31 +  63644993 ccaaagccatgggattacagatgtgagccac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56755616 31 +  60714840 ccaaagccatgggattacagacatgagccat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293249 31 - 106955855 ccaaagccatgggattacagacgtgagccac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60581126 31 +  64156825 ccaaagccatgggattacagatgtgagccac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55707292 31 +  59248254 ccaaagccatgggattacagatgtgagccac
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47536045 31 +  50890351 ccaaagccatgggattacagatgtgagccac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45890443 31 +  49145316 ctgagtatctgtgattacaggtgtgcaccac
i calJac3.chr22             C 0 I 278
e canFam3.chr1               20009129  0 - 122678785 C
e papAnu2.chr19              47822227 1232 +  51301725 I

a score=3279.000000
s hg38.chr19_GL949751v2_alt    842621 2 +   1002683 ag
s panTro4.chr19              59844477 2 +  63644993 ag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56755647 2 +  60714840 gg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293280 2 - 106955855 ag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60581157 2 +  64156825 ag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55707323 2 +  59248254 ag
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47536076 2 +  50890351 ag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009129 0 - 122678785 C
e calJac3.chr22              45890474 278 +  49145316 I
e papAnu2.chr19              47822227 1232 +  51301725 I

a score=139371.000000
s hg38.chr19_GL949751v2_alt    842623 63 +   1002683 cacccagtcAGAAAAGTTTTCTAAAAAGAAATTTAGACCCACACAATGGGGA-TCCTTATAAGT
s panTro4.chr19              59844479 63 +  63644993 cacccagccAGAAAGGTTTTCTAAAAAGAAATTTAGACCCACACAATGGGGA-TCCTTATAAGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56755649 60 +  60714840 cacccggccAGAAACGTTTTCTAAA---AAATTTAGACCCACACAATGGGGA-TCCTTGTAAGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293282 63 - 106955855 cacccggccAGAAACGTTTTCTAAAAAGAAATTTAGATCCACACAAGGGGGA-TCCTTATAAGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60581159 63 +  64156825 cacccagccAGAAACATTTTCTAAAAAGAAATTTAGACCCACACAATGGGGA-TCCTTGTAAGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55707325 63 +  59248254 cacccagccAGAAACATTTTCTAAAAAGAAATTTAGACCCACACAATGGGGA-TCCTTGTAAGT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47536078 63 +  50890351 cacccagccAGAAACGTTTTCTAAAAAGAAATTTAGACACACACAATGGGGA-TCCTTATAAGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45890752 64 +  49145316 cacccggcTGGAAACATTTTCTAAAAAAGAATTTAGATCCACACAATGAGAATTCCTTATAAGT
i calJac3.chr22             I 278 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e papAnu2.chr19              47822227 1232 +  51301725 I

a score=249104.000000
s hg38.chr19_GL949751v2_alt    842686 147 +   1002683 CTAAGA----AAAAAAAGATTATggccaggcacggtgtctcgcacctgtagtcccagcactttgggaggccaaggcaggcagattgcttgagctccgcagttcaaggccagcctgggcaacacgg------------------------------------------------------------tgaaaccctgtctctacc--------aaaaatag
s panTro4.chr19              59844542 147 +  63644993 CTAAGA----AAAAAGAGATTATggccaggcacggtgtctcgcacctgtagtcccagcgctttgggaggccaaggcaggcagattgcttgagctccacagttcaaggccagcctgggcaacacag------------------------------------------------------------tgaaaccctgtctctacc--------aaaaatag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56755709 147 +  60714840 CTAAGA----AAAAAAAGATTATggccaggcccggtgtctcacacctgtagtcccagcactttgggaggccaaggcaggcagatcgcttgagctcagcagttcaagaccagcctgggcaacacgg------------------------------------------------------------tgaaaccgtgtctctacc--------aaaaatac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293345 120 - 106955855 CTAAGA----AAAAAAAGATTATggccaggcccggtgtctcacacctgtagtcccagaactttgggaggccaagtcaggcagattgcttgagctcagcagttcaa--------------------------------------------------------------------------------------catgtc-cagct--------aaaaatac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60581222 141 +  64156825 CTAAGA----AAAAAGA--TTATggccaggcacggtgtctcacacctgtagtcccagcactttgggaggccaaggctggcggattgc--------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn----------------------------------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55707388 145 +  59248254 CTAAGA----AAAAAGA--TTATggccaggcacggtgtctcacacctgtagtcccagcactttgggaggccaaggctggcagattgcttgagctcagcagttcaagaccagactgggcaacacag------------------------------------------------------------caaaaccctgtctctacc--------aaaaatac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47823459 153 +  51301725 ctaaaaatacaaaaaaa--t--tggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacaggcggatcac--gaggtcaggagatcgagaccatcctggctaacacgg------------------------------------------------------------tgaaaccccgtctctactaaaaaaaaaaaaatac
i papAnu2.chr19             I 1232 C 0
s chlSab2.chr6               47536141 144 +  50890351 CTAAGA----AAAAACAGCTTATggccaggcacggtgtctcacacctgtagtcccagcactttgggaggccaaggccggcagattgcttgagctcagcagttcaagacaagcctgggcaacacag------------------------------------------------------------cgaaaccctgtctct-----------aaaaatac
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45890816 135 +  49145316 CTAAGA----AAAAAAG-ATTATGGCCAGGCACAG-----------tgtaattccagctctttgggaggctgcaggaggcagatcacttgagctcaggagttcaagacctgcccaggtaacacag------------------------------------------------------------tgaaatcctgcctctacc--------aaaactac
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C

a score=732870.000000
s hg38.chr19_GL949751v2_alt    842833 451 +   1002683 aaaaagttagccaggaatgg----------------------------------------------tggtgcacgcctatagtcccagctactcgggaggcggaggcaagaggatcacttgagcccaggaggcggaggttgcaacgagctagagattgccctactgcactccagcct-ggtaacagagtaaaacatgccttt-aaaaaataaatttaaaaaaTAGATAATCAggctggtgcacggtgactcacgcctataattccagcactttgggaggccgaggcgggcagatcacctgaggtcaggaattcgaga-------------------------------ccagcctggccaac-atagtgaaaccccgtctc------------tactaaaaatac--aaaaattagctgggcatggtggcagacaactgtaataccagctactcaggaggctgagacaggagaatcgctttgaacctgggaggcagatgttgcagtgagc-----------------------------------------------------------------------------------------------caataccgcaccactgtactgcagcccgggtgaca-
s panTro4.chr19              59844689 447 +  63644993 aaaa----agccaggaatgg----------------------------------------------tggtgcacgcctatagtcccagctactcgggaggcggaggcaggaggatcacttgggcccacgaggcggaggtttcaacgagctagagattgccctactgcactccagcct-ggtaacagagtaaaacatgccttt-aaaaaataaatttaaaaaaCAGATAATCAggctggtgcacggtgactcacgcctataattccagcactttgggaggccgaggcgggcagatcacctgaggtcaggaattcgaga-------------------------------ccagcctggccagc-atagtgaaaccccgtctc------------tactaaaaatac--aaaaattagctgggcatggtggcagacaactgtaataccagctactcaggaggctgagacaggagaatcgctttgaacctgggaggcagatgttgcagtaagc-----------------------------------------------------------------------------------------------caatatcgcaccactgtactgcagcccgggtgcca-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56755856 448 +  60714840 aaaaagttagccaggaatgg----------------------------------------------tggtgcacgcctatagtcccagctactcgggaggctgaggcaggaggatcacttgagcccaggaggcagaggttgcaacgagctggagattgccctactgcactccagcctgggtaacagagtaaaacatgccttt-aaaaaataaatttaaaaaaTAGATAATCAggccggtgcacggtggctcacgcctataattccagcactttgggaggccaagacgggtggatcacctgaggtcaggaattcgaga-------------------------------ccagcctggccaac-atagtgaaaccccgtctc------------tactaaaaatac--aaaaattagctgggcgtggtggcagacaactgtaataccagctacttaggaggctgagacaggagaatcactttgaacctgggagaca----ttgcagtgagc-----------------------------------------------------------------------------------------------caatatcgcgccactgtactgcagcctgggtgaca-
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60581363 450 +  64156825 --------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------gaggctgaggcaggaggatcacttgagcccaggaggcggaggttgcaacaagatagagattgccctactgcactccagcctgggtaacacagtaaaacatgtctttaaaaaaataaaTTTGAAAACTAGATAATCAggccggggcatggtggctcatgcctataatcccagcactttgggagactgaggcgggcagatcacctgagattgggagttcaaga-------------------------------ccagcctgaccaac-atggagaaacaccatctc------------tactaacaatacaaaaaaattagccaggcatggtggcccatgctcaccatcccagctactcaggaggctgaggcaggagaattgc-ctgaacccgggaggcagaggttgcagtgagc-----------------------------------------------------------------------------------------------taaaattgcaccacggcactccagcctgggtaaca-
i rheMac3.chr19             C 0 I 700
s macFas5.chr19              55707533 452 +  59248254 aaaaagttaggcaggaatgg----------------------------------------------tgatgcatgcctatagtcccagctactcgggaggctgaggcaggaggatcacttgagcccaggaggcggaggttgcaacaagatagagattgccctactgcactccagcctgggtaacacagtaaaacatgtctttaaaaaaataaaTTTGAAAACTAGATAATCAggccggggcatggtggctcatgcctataatcccagcactttgggagactgaggtgggcagatcacctgaggtcaggagttcgaga-------------------------------ccagcctggccaac-atagtgaaaacccgtctc------------tactaaaaatac--aaaaattagctggttgtggtggcagacacctgaaataccagctactcaggaggctgagacatgagaatcactttgaacctgggaggtggacgttgcagtgagc-----------------------------------------------------------------------------------------------caatatcatgccactgtactgcaaccc-ggtgaca-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47823612 572 +  51301725 aaaaaactagccgggcgcag----------------------------------------------tggcgggcgcctgtagtcccaactactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagtttgcagtgagct-gagatccagccactgcactccagcctaggcggcagagcgagactccatctcaaaaaaaaaaattag------------------ccgggcatggtggcccatgctcgcaatcccagctactcaggaggctgaggcagaagaatcacttgaacctgggaggctgaggttgcagtgagcagagatcacaccattgccctctagcctgggcaataagagtgaaactccgtctcaaaaaagtaaaataaaataaatac--aaaaattagccaggcatgctggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgc-ttgaacccgggaggcagaggttgcagtgagcaggagaattgcttgaggcagTGTGAGAGAATTGCAGTGAGGCAGGATtgcagtgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagattgcaccactgcactccagcctgggcaaca-
i papAnu2.chr19             C 0 I 25
s chlSab2.chr6               47536285 452 +  50890351 aaaaagttagccaggaatgg----------------------------------------------tggtgcatgcctatagtcccagctactcgggaggctgaggcaggaggatcacttgagcccaggaggtggaggttgcaacaagatggagattgccctactgcactccagcctgggtaacacagtaaaacatgtcttt-aaaaaataaaTTCGAAAACTAGATAATCAggccggggcatggtggctcatgcctataatcccagcactttgggagactgaggcgggcagatcacctgaggtcaggagttcaaga-------------------------------ccagcctggccaac-attgtgaaaacctgtctc------------tactaaaaatac--aaaaattagctggttgtggtggcagacacctgaaataccagctactcaggaggctgagacatgagaatcactttgaacctgggaggcagacgttacagtgagc-----------------------------------------------------------------------------------------------caatatcgtgccactgtactgcaacctgggtgaca-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45890951 408 +  49145316 aaaa----agccaggaatgg----------------------------------------------tagtacacacctatagtcccagctagtcaggaggctgagacagcaggatcacttaagcgcaggaggcagaggttgcaacgagctggagatggccctactgca-tttagcctgggtaaca-----aaATATGTCTTT-----------------------------Aggccggcgc--ggtggctcatgcctgtaatcccagcactttgggaggccgagacgggtggatcac--gaggttgaga--ttgaga-------------------------------ccatcctggtcaac-gtggtgaaacgccgtctc------------gactaaaaatac--aaaaattagctggtcacggtggcgcgtgcctgtagtcccagctactggggaggctgaggcaggagaattgc-ctgaacccaggaggtggaggttgcggtgagc-----------------------------------------------------------------------------------------------caagatcgcatcattgcactccagcctgggtaacaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e nomLeu3.chr10             103293465   0 - 106955855 C

a score=20617.000000
s hg38.chr19_GL949751v2_alt    843284 14 +   1002683 gagcgagactctgc
s panTro4.chr19              59845136 14 +  63644993 gagcgagactctgc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56756304 14 +  60714840 gagtaagactctgt
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55707985 14 +  59248254 gagcaagactctgt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47824209 14 +  51301725 gaaaaagactttgt
i papAnu2.chr19             I 25 C 0
s chlSab2.chr6               47536737 14 +  50890351 gagcaagactctgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45891359 14 +  49145316 gagcaaaactccgt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e nomLeu3.chr10             103293465  0 - 106955855 C
e rheMac3.chr19              60581813 700 +  64156825 I

a score=4438.000000
s hg38.chr19_GL949751v2_alt    843298 3 +   1002683 ctc
s panTro4.chr19              59845150 3 +  63644993 ctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56756318 3 +  60714840 ctc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60582513 3 +  64156825 CTC
i rheMac3.chr19             I 700 C 0
s macFas5.chr19              55707999 3 +  59248254 ctc
i macFas5.chr19             C 0 I 606
s papAnu2.chr19              47824223 3 +  51301725 ctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47536751 3 +  50890351 ctc
i chlSab2.chr6              C 0 I 631
s calJac3.chr22              45891373 2 +  49145316 ct-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129 0 - 122678785 C
e nomLeu3.chr10             103293465 0 - 106955855 C

a score=21904.000000
s hg38.chr19_GL949751v2_alt    843301 14 +   1002683 caaa--------------------taaataaata
s panTro4.chr19              59845153 14 +  63644993 caaa--------------------taaataaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56756321 14 +  60714840 caaa--------------------taaataaata
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60582516 14 +  64156825 CAAA--------------------TAGATAAATA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55708608 34 +  59248254 caaacaagaaaaaGACTCTGTCTCCAAATAAATA
i macFas5.chr19             I 606 C 0
s papAnu2.chr19              47824226 14 +  51301725 caaa--------------------tagataaata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47537385 14 +  50890351 CAAA--------------------TAGATAAATA
i chlSab2.chr6              I 631 C 0
s calJac3.chr22              45891375 14 +  49145316 caaa--------------------aaaaTATATA
i calJac3.chr22             C 0 I 306
e canFam3.chr1               20009129  0 - 122678785 C
e nomLeu3.chr10             103293465  0 - 106955855 C

a score=1238589.000000
s hg38.chr19_GL949751v2_alt    843315 752 +   1002683 aaaaaTAGTGGCAAATCAAACCTTCAGTAGAACTAAGAGAATGCCAGAGTGAACCCCAGGGTTAATGATAGCAAACTTGGCTCTAACGTGGCTGCAGCATGCAAGCCTGTGTATGTGAACATGAGGGGTGGTGAttgtggagacactggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacaatcctcccaccttggcctcccaaagGAGGAACTGAGGAATGAGAAAAGAAAT-ACGCCCCAAACATATGACATAAGAGACCACAGGGGGCTAGAGATTTGTCACCAATAGTCCTTGGTGGCATTACAGACCTCGGTCCCACCAACAAGAGAAGCATGACACTATTTAGCTCAAGTTTCATGATATACCCCTAAAACCTTAAcccatttatgccagaggttacaattatttgaactgcagac--gtgtgaaaaatcgt------------accttgagcaggatataaataactcccacatgcttagcgttccaataatgcaacactgggcatCATGAAGCAGTTTACATGCGTATCATCTCTACAACTAAAATAACTCTTGAATAAGACAAGTGggctgtgcacagtggctcacgcctgcaatccgggtactttgtgaggccaagacaggaggatcgtttgaagccaggagtttgagaa---cctcggcaacacggccacacagtgcagcagagcaaaacgttgtctcag---------------------------------------aaaagaaaa-------------gacaaaGGCAAGAAGAAACTAAAGGTAGATTACGTTA
s panTro4.chr19              59845167 772 +  63644993 aaaaaTAGTGGCAAATCAAACCTTCAGTAGAACTAAGAGAATGCCAGAGTGAACCCCAGGGTTAGTGATAGCAAACTTGGCTCTAACGTGGCTGCAGCATGCAAGCCTGTGTATGTGAACATGAGGGGTGGTGAttgtggagacactggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacaatcctcccaccttggcctcccaaagAAGGAACTGAGGAATGAGAAAAGAAAT-ACGCCCAAAAC--ATGACATAAGAGACCACAGGGGGCTAGAGATTTGTCACCAATAGTCCTTGGTGGCATTACAGACCTCGGTCCCACCAACAAGAGAAGCATGACACTATTTAGCTCAAGTTTCATGATATACCCCTAAAACCTTAAcccatttatgccagaggttacaattatttgaactgcagac--gtgtgaaaaattgt------------accttgagcaggatataaataactcccacatgcttagcgttccaataatggaacactgggcatCATGAAGCAGTTTACATGCGTATCATCTCTACAACTAAAATAACTCTTGAATAAGACAAGTGggctgtgcacagtggctcacgcctgcaatcccggtactttttgaggccaagacaggaggatcgtttgaagccaggagtttgagaa---cctcggcaacatggccacacagtgccacagagcaaaacgttgtctcag-aaaagaaaa-----gaaaagaaaagaa-----------aaaagaaaa-------------gagaaagGCAAGAAGAAACTAAAGGTAGATTACGTTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56756335 762 +  60714840 aaaaaTAGTGGCGAATCAAACCTTCAGTAGAACTAAGAGAATGCCAGAGTGAACCCCAGGGTTAATGAGAGCAAACTTGGCTCTAACGTGGCTGCAGCATGCAAGCCTGTGTATGTGAACATGAGGAGTGGTGAttgtagagacactggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacgat-ctcccaccttggcctccca---gagGAACTGAAGAATGAGAACAGAAAT-ACGCCCAAAACATGTGACATAAGAGACCACAGGGGGCTAGAGATTTGTCAACAATAGTCCTTGGTGGCATGACAGACCTCGGTCCCACCAGCAAGAGAAGCATGACACTATTGAGCTCAAGTTTCATGATATACCCCTAAAACCTTAAcccatttatgccagaggttacaattatttgaactgcagacatgtgtgaaaaatcctaccttggcaatgaccttgagcaggatataaataactcccacatgcttagcgttccaataatggaacactgggcatCATTAAGCAGTTTACATGTGTATCATCTCTACAGCTAAAATAACTCTTGAATAAGACAAGTGGgctgtgcacagtggctcacgcctgcaatctcagtactttgtgaggccaagacaggaggatcgtttgaagccaggagtttgagaa---ccttggcaacacagcCACACAGTGCAACAGAGCAAAACGTTGTCTCAG---------------------------------------AAAAGAAAA-------------GAGAAAGGCAAGAAGAAACTAAAGGTAGATTATGTTA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60582530 736 +  64156825 AAAACTAGTGGCAAATCAAACCTTCAGTAGAACTAAGAGAATGCCAGAGTGAACCCCAGGGTTAATCATAGCAAACGTGGCTCTAACATGATAGCGGCATGCAACCCTGTGCATGTGAACATGAGGGGTGGTCAttgtagaggcactggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacaatcctcccaccttggcctcccagagGAGGAACTGAGGAATGAGAACAGAAATAACATCCAAAACATATGACATAAGAGACCACA--GGGTTAGAGATTTGTCACCAATAGTCCTTGGTGGCATTACAGATCATGGTCCCACTAGCAAGAGAAGCATGACACTGTATAGCTGAACTTTCAT-ATATACCCCTAAAATCTTAAcccatttatgccagaggttacaattatttgaagtgcagacatgtgtgaaaaatcgtaccttgggaatgaccttgagcaggatataaataactcccacatgcttagcattccaataatggaacactagacatCGTTAAGCAGTTTAAATGCGTATCATCTCTACAACTA----AACTCTTGAACAAGACAAGTGggctgtgcacagtggctcacgcctataatcctagtgctttgtgaggccaagacaggaggatcgctcgaagccaggagtttgagaacagccttggcaacatagcTACATAGTACAGCAGAGCAAAACATTGTCTaaagaaaaggaaa-----------------------------agggccggg--------------------------------------------------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55708642 808 +  59248254 AAAACTAGTGGCAAATCAAACCTTCAGTAGAACTAAGAGAATGCCAGAGTGAACCCCAGGGTTAATCATAGCAAACGTGGCTCTAACATGATAGCAGCACGCAACCCTGTGCATGTGAACATGAGGGGTGGTCAttgtagaggcactggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacaatcctcccaccttggcctcccagaggaggaactgagGAATGAGAACAGAAATAACATCCAAAACATATGACACAAGAGACCACA--GGGTTAGAGATTTGTCACCAATAGTCCTTGGTGGCATTACAGACCATGGTCCCACTAGCAAGAGAAGCATGACACTGTATAGCTGAACTTTCAT-ATATACCCCTAAAATCTTAAcccatttatgccagaggttacaattatttgaactgcagacatgtgtgaaaaatcgtaccttggcaatgaccttgagcaggatataaataactcccacatgcttagcattccaataatggaacactagacatCGTTAAGCAGTTTAAATGCGTATcatctctacaacta----aactcttgaacaagacaagtgggctgtgcacagtggctcacgcctataatcctagtgctttgtgaggccaagacaggaggatcgctcgaagccaggagtttgagaacagccttggcaacatagctacatagtacagcagagcaaaacattgtctcaagaaaaggaaaggacagaaaagggaaaagggtaag-----aggaaaggggaaagggaaaaa-gaaaaaggcaagaagaaaCT-GAGGTAGATTATGTTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47824240 794 +  51301725 aaaactagTGGCAAATCAAACCTTCAGTAGAACTAAGAGAATGCCAGAGTGAACCCCAGGGTTAATCATAGCAAACGTGGCTCTAACATGACAGCAGCATGCAACGCTGTGCTTGTGAACATGAGGGGTGGTCATTGTAGAGGCACtggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacgatcctcccaccttggcctcccagaggagGAACTGAGGAATGAGAACAGAAAT-ACGTCCAAAACATATGACATAAGAGACCACA--GGGTTAGAGATTTGTCACCAATAGTCCTTGGTGGCATTACAGACCATGGTCCCACTAGCAAGAGAAACATGACACTGTATAGCTCAACTTTCATGATATACCCCTAAAACCTTAACTCATTTATGCCAGAGGTTACAATTATTTGAACTGCAGAC--GTGTGAAAAATCGtaccttggcaatgaccttgagcaggatataaataactcccacatgcttagcgttccaataatggaacactagacATCGTTAAGCAGTTTACATGCGTA-----TCTACAACTA----AACTCTTGAACAAGACAAgtgggctgtgcacagtggctcacgtctgtaatcctagtactttgtgaggccaacacaggaggatccctcgaagccaggagtttgagaacagccttggcaacatagctaCATAGTACAGCAGAGCAAAACATTGtctcaagaaaaggaaaggacagaaaagggaaaagggaaaggggaaagggaaaaa-------------gaaaaaggcaagaagaaact-gaggtagattatgtta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47537399 800 +  50890351 AAAACTAGTGGCAAATCAAACCTTCAGTAGAACTAAGAGATTGCCAGAGTGAACCCCAGGGTTAATCATAGCAAACATGGCTCTAACATGACAGCAGCATGCAACCCTGTGCATGTGAACATGAGGGGTGGTCAttgtagaggcactggcttgctatgttgcccaggctggtctcaaactcctggcctcaaacgatcctcccaccttggcctcccagaggaggaactgagGAATGATAACAGAAAT-ACGTCCAAAACATATGACACAAGAGACCTCA--GGGTTGGAGATTTGTCACCAATAGTCCTTGGTGGCATTATAGACCATAGTCCCACTAGCAAGAGAAGCATGACACTGTATAGCTCAACTTTCATGATATACCCCTAAAATCTTAAcccatttatgccagaggttacaattatttgaactgcagacatgtgtgaaaaatcgtaccttgttaatgaccttgagcaggatataaataactcccacatgcttagcgttccaataacggaacactagacatCGTTAAGCAGTTTAAATGTGTATcatctcta----ta----aactcttgaacaagacaagtgggctgtgcacagtggctcacgcctataatcctagtactttgcgaggccaacgcaggaggatcgcttgaagccaggagtttgagaacagccttggcaacatagctacatagtacagcagagcaaaacattgtctcaggaaaaggaaa-----ggagagggaaaagggtaag-----gggaaaggggaaagggaaaaagaaaaaaggcaaGAAGAAACT-GAGGTGGACTATGtta
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465   0 - 106955855 C

a score=305770.000000
s hg38.chr19_GL949751v2_alt    844067 283 +   1002683 AAATAAGTCACTGAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacctgaggtcaggaattcgagaccagcctggccaacatagtgaaaccccatctctact-aaaaatac-aaaaaattagccgggcgtggtggcgggcgcct--------------------gtagtcccagctgctcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccgcttcactccagcctgggcgacagag
s panTro4.chr19              59845939 282 +  63644993 AAATAAGTCACTGAggccgggcgcagtggctcacgcctgtaatctcagcactttgggaggccgaggcgggcggatcac--gaagtcaggagatcaagaccatcctggctaacacagcgaaaccccgtctctact-aaaaatacaaaaaaattagccgggcatggtggcgggcgcct--------------------gtagtcccagctgctcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccgcttcactccagcctgggcgacagag
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60583266 248 +  64156825 ---------------------cgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcac--aaggtcagcagatcgagac------------gacggtgaaaccccgtctctact-aaaaatac-aaaaaattagccgggcgcggtggcgggcgcct--------------------gtagtcccagctactcaggaggctgaggcaggagaatggcgtaaacccaggaggcggagcttgcattgagccgagatcgtgccactgcactccagcctgggcgacagag
i rheMac3.chr19             C 0 I 413
s macFas5.chr19              55709450 275 +  59248254 AAATAAGTCATTGA-------Tgtggtggctcaagcctgtaaccccagcactctgggaggccgagacgggcagatcgc--aaggtcaggagatcgagaccaccctggctaacacggtgaaaccccgtctctactaaaaaatac-aaaaaactagccaggcgaggtggcgggcgcct--------------------gtagtcccagctactcaggaggctgaggcgggagaatggcatgaacccgggaggcggagcttgcagtgagctgagatctggccactgcactccagcctgggcgacacag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825034 274 +  51301725 aaataagtcattga-------tgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcat--gaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatac-aaaaaactagccgggcgtggtggcgggcgcct--------------------gtagtcccagctactcgggacgctgaggcgggagaatggcgtgaacccaggaggcagagcttgcagtgagctgagatccagccactgcactccagcctgggcgacaga-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47538199 295 +  50890351 aaataagttattga-------tgcagtggctcaagcctgtaattccagcactctgggaggccgagacgggcagatcgc--gaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatac-aaaaaactagctgggcgaggtggcgggcgcctgtagtcccagctactcgggagtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatgcggccactgcactccagcgcgggcgacagag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e ponAbe2.chr19              56757097   0 +  60714840 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465   0 - 106955855 C

a score=-4645.000000
s hg38.chr19_GL949751v2_alt    844350 65 +   1002683 actggagtctctgtctcaaaaaaaagacagattcaaaaaaaaagaCAGACT----------CCGTCTCAAAAAAA
s panTro4.chr19              59846221 75 +  63644993 actggagtctctgtctcaaaaaaaagacagattcaaaaaaaaagaCAGACTCAAAAAAAGACTGTCTCAAAAAAA
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55709725  2 +  59248254 -cg------------------------------------------------------------------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825308 22 +  51301725 acggga--ctccatctcaaaaaaa---------------------------------------------------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47538494 21 +  50890351 -caaga--ctccatctcaaaaaaa---------------------------------------------------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56757097  0 +  60714840 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465  0 - 106955855 C
e rheMac3.chr19              60583514 413 +  64156825 I

a score=3018.000000
s hg38.chr19_GL949751v2_alt    844415 5 +   1002683 AGACT
s panTro4.chr19              59846296 5 +  63644993 AGACT
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60583927 5 +  64156825 agact
i rheMac3.chr19             I 413 C 0
s macFas5.chr19              55709727 5 +  59248254 agact
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47538515 5 +  50890351 ataat
i chlSab2.chr6              C 0 I 14
e canFam3.chr1               20009129 0 - 122678785 C
e ponAbe2.chr19              56757097 0 +  60714840 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465 0 - 106955855 C
e papAnu2.chr19              47825330 0 +  51301725 C

a score=6419.000000
s hg38.chr19_GL949751v2_alt    844420 20 +   1002683 CCGTCTCAAAAAAAAATAAA
s panTro4.chr19              59846301 20 +  63644993 CCATCTCAAAAAAAAATAAA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60583932 18 +  64156825 ccgtctcaaaaaaaaata--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55709732 18 +  59248254 ccgtctcaaaaaaaaata--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825330  3 +  51301725 ---------------ata--
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56757097  0 +  60714840 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465  0 - 106955855 C
e chlSab2.chr6               47538520 14 +  50890351 I

a score=4633.000000
s hg38.chr19_GL949751v2_alt    844440 6 +   1002683 AAATAC
s panTro4.chr19              59846321 6 +  63644993 AAATAC
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60583950 6 +  64156825 aaatta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55709750 6 +  59248254 aaatta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825333 6 +  51301725 aaataa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47538534 6 +  50890351 aaatta
i chlSab2.chr6              I 14 C 0
e canFam3.chr1               20009129 0 - 122678785 C
e ponAbe2.chr19              56757097 0 +  60714840 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465 0 - 106955855 C

a score=902897.000000
s hg38.chr19_GL949751v2_alt    844446 535 +   1002683 AAATAAGTCATTGAAAAGATATACACGGGTCACAACTAAGGGAGCATCTGTAGGACGATCTTCTGAAAAGCTAAGACCCAGGACAGCTCTGGGAACTACCTATTTTTGGATATAATGATTAGGGgtgtgtg--------tgtgtgtgtgtgtgtgCTCATGCACACACATACACACAAGCTTCCAGTCTGTACTCCAGGATGATTTAAACTCTCAGTATGCCTAGGACTAAGTGTTTTGGGGGAAA-GTTGGACAATATTCAATTCACAGAGCATTTTAGAAAAGTATCTAATTTTTAAATTATCTCCTAAGCTAGGAGTGTGCTATAGAAAGATGCCTTAAGTTGATCCCTACAAAGAGTACACACACTCCC-AAAAAA--A-CTCTTCTCTGCATGGGAAATTCACCATGTGAAACAGCCATCCCAGggccgagcacagtggctcacgcctgtaatcccggcactttgagaggctgaggcaggtggatcacctgaggttgggagtttgagaccaacctgaccaacatggtgaaacccc-atctctac
s panTro4.chr19              59846327 533 +  63644993 AAATAAGTCATTGAAAAGATATACATGGGTCACAACTAAGGGAGCATCTGTAGGACAATCTTCTGAAAAGCTAAGACCCAGGACAGCTCTGGGAACTACCTATTTTTGGATATAATGATTAGGG--GTGTG--------TGTGTGTGTGTGTATGCTCATGCACACACATACACACAAGCTTCCAGTCTGTACTCCAGGATGATTTAAACTCTCAGTATGCCTAGGACTAAGTGTTTTGGGGGAAA-GTTGGACAATATTCAATTCACAGAGCATTTTAGAAAAGTATCTAATTTTTAAATTATCTCCTAAGCTAAGAGTGTGCTATAGAAAGATGCCTTAAGTTGATCCCTACAAAGAGTACACTCACTCCC-AAAAAA--A-CTCTTCTCTGCATGGGAAATTCACCATGTGAAACAGCCATCCCAGggccgggcacagtggctcacacctgtaatcccagcactttgagaggctgaggcaggtggatcacctgaggttgggagtttgagaccaacctgaccaacatggtgaaacccc-atctctac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56757097 505 +  60714840 AAATAAGTCATTGAAAAGATATACACAGTTCACAATTAAGGGAACATCTGTAGGACGATCTTCTGAAAAGCTAAGACCCAGGACAGCTCTGGGAACTACCTATTTTTGGATATAATGAT----------------------------------------TGCAAACACACACACACAAGCTTCCAGTCTGTACTCCAGGATGATTTAAACTCTCAGTATGCCTAGTACTAAGTGTTTTGGGGGGAATGTTGGACAATATTCAATTCACAGAGCATTTTAGAGAAGTATCTAATTTTTAAATTATCTCCTAAGCTAGGAGTGTGCTATAGAAAGATGCCTTAAGTTGATCCCTACAAAGAGTGCACCCACTCCC-AAAAAA--AGCTCTTCTCTGCATGTGAAATTCACCATGTGAAACAGCCATCCCAGggccgggcacagtggctcacacctgtaatcccagcattttgagaggctgaggcaggtggatcacctgaagttgggagtttgagaccaacctgaccaacatggtgaaacccc-atctctac
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60583956 535 +  64156825 aaataaGTCATTGAAAAGATATACATGGTTCACAATTAAGGGAACATCTGTAGGATGATTTTCTGAAAAGCTAAGACCCAGGACAACTCTGGGAACTACCTATTTTTGGATGTAGTGATGAGGG--GGGTG--------TGTGTGCGTGTGTACGCTCATGCACACACATACACTCAAGCTTCCAGTCTGTACTCCAGGATGATTTAAACTGTCAGTATGCCAAGTACTAAGTGTTTGGGGGGAAT-GTTGGACAATATTCAATTCACAGAGCATTTTACAGAAGTATCTAATTTTTAAATTATCTCCTAAGCTAGGAGTGTGCTATAGAAAGATGCCTTAAGTTGATTCCTACAAAGAGTGCACCCACTCCC-AAAAAACCA-CTCTTCTCTGCATGGGAAATTCACCATGTGAAACAGCCATCCCAGggctgggtgtggtggctcacacctgtaatcccagcactttgaggggctgaggcgggtggatcacctgaggttgggagtttgagaccaacctgaccaacatagtgaaaccct-gtttctac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55709756 535 +  59248254 aaataaGTCATTGAAAAGATATACATGGTTCACAATTAAGGGAACATCTGTAGGATGATCTTCTGAAAAGCTAAGACCCAGGACAACTCTGGGAACTACCTATTTTTGGATGTAGCGATGAGGG--GGGTG--------TGTGTGCGTGTGTACGCTCATGCACACACATACACTCAAGCTTCCAGTCTGTACTCCAGGATGATTTAAACTGTCAGTATGCCAAGTACTAAGTGTTTGGGGGGAAT-GTTGGACAATATTCAATTCACAGAGCATTTTACAGAAGTATCTAATTTTTAAATTATCTCCTAAGCTAGGAGTGTGCTATAGAAAGATGCCTTAAGTTGATTCCTACAAACAGTGCACCCACTCCC-AAAAAACCA-CTCTTCTCTGCATGGGAAATTCACCATGTGAAACAGCCATCCCAGggctgggtgtggtggctcacacctgtaatcccagcactttgaggggctgaggcgggtggatcacctgaggttgggagtttgagaccaacctgaccaacatagtgaaaccct-gtttctac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825339 535 +  51301725 aaataagtcatttaaaaGATATACATGGCTCACAATTATGGGAACATCTGTGGTACGATCCTCTGAAAAGCTAAGACCCAGGACAGCTCTGGGAACTACCTATTTTTGGATGTAGCGAtgaggg--gggtg--------tgtgtgcatgtgtgcgtgtgtacgCTCATGTACACACAAGCTTCCAGTCTGTACTCCAGGATGATTTAAACTGTCAGTATGCCAAGTACTAAGTGTTT-GGGGGAAT-GTTGGACAATATTCAATTCACAGAGCATTTTAGAGaagtatctaatttttaaattatctcctAAGCTAGGAGTGTGCTATAGAAAGATGCCTTAAGTTGATTCCTACAAAGAGTGCACCCACTTCC-AAAAAACCA-CTCTTCTCTGCATGGGAAATTCACCATGTGAAACAGCCATCCCagggctgggtgtgttggctcacacctgtaatcccagcactttgaggggctgaggcaggtggatcacctgaggttgggagtttgagaccaacctgaccaacatagtgaaaccctggtctctac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47538540 538 +  50890351 aaataaGTCATTTAAAAGATATACATGGTTCACAATTACGGGAACATCTGTGGGATGATCTTCTGAAAAGCTAAGACCCAGGACAACTCTGGGAACTACCTATTTTTGGATGTAGTGATGAGGG--GGCTGTGTGTGCATGTGTGCGTGTGTACGCTCATGCACACACATACACACAAGCTTCCAGTCTATACTCCAGGATGATCTAAACTGTCAGTAAGCCAAGTACTAAGTGTTG-GGGGGAAC-GTTGGACAATATTCAATTCACAGAGCATTTTAGAGAAATATCTAATTTTTAAATTATCTCCTAAGCTAGGAGTGTGCTACAGAAAGATGCC-----TTGATTCCTACAAACAGTGCACCCACTCCCAAAAAAAATA-CTCTTCTCTGCATGAGAAATTCACCATGTGGAACAGCCATCCCAGggccgggtgtgttggctcacacctgtaatcccagcactttgaggggctgaggcaggtggatcacctgaggttgggagtttgagaccaacctgaccaacatagtgaaaccct-gtctctac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e calJac3.chr22              45891389 306 +  49145316 I
e nomLeu3.chr10             103293465   0 - 106955855 C

a score=95115.000000
s hg38.chr19_GL949751v2_alt    844981 45 +   1002683 taaaaacta-----caaaaattggccaggtgcagtggctcatgcctgtaa
s panTro4.chr19              59846860 45 +  63644993 taaaaacta-----caaaaattggccaggtgccgtggctcatgcctgtaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56757602 45 +  60714840 taaaaacta-----caaaaattggccaggtgccgtgactcatgcctgtaa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60584491 45 +  64156825 tgaaaacta-----caaaaattggccaggtgcagtggctcatgcctgtaa
i rheMac3.chr19             C 0 I 274
s macFas5.chr19              55710291 45 +  59248254 tgaaaacta-----caaaaattggccaggtgcagtggctcatgcctgtaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825874 45 +  51301725 taaaaacta-----caaaaattggccaggtgtagtggctcatgcctgtaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539078 45 +  50890351 taaaaacta-----caaaaattgaccaggtgcagtggctcatgcctgtaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45891695 50 +  49145316 TAAAAACAAAGTGGCAAATCATGGCCATTTgtggtggttcacacctataa
i calJac3.chr22             I 306 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e nomLeu3.chr10             103293465  0 - 106955855 C

a score=253210.000000
s hg38.chr19_GL949751v2_alt    845026 161 +   1002683 tcccagcactttgggaggccaaggcgagaagatcacctgaggtcaggagctcgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcga-gcgactgtaatcctagctactcaggaggctgaggca
s panTro4.chr19              59846905 161 +  63644993 tcccagcactttgggaggccaaggcgagaagatcacctgaggtcaggagctcgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcga-gcgactgtaatcctagctactcaggaggctgaggca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56757647 161 +  60714840 tcccagcactttgggaggccaaggcgagaagatcacctgaggtcaggagctcgagaccagcctggccaacatggcaaaacaccgtctctactaaaaatacaaaaattagctgggcgtggtggcgg-gcgcctgtagtcctagctactcgggaggctgaggca
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55710336 161 +  59248254 ctccagcactttggaaggccaaggcaggcagatcacctgaggtcaggagctcaagaccagcctggccaatatggtgaaaccctgtctctactaaaagtacaaaaattagtcgggcgtggtggcaa-gcaactgtaatcccagctactcaggaggctgaggca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47825919 147 +  51301725 ctccagcactttggaaggccaaggcaggcagatcacctgaggtcaggagctcaagacca--------------gtgaaaccctgtctctactaaaagtacaaaaattagccgggcgtggtggcaa-gcgactgtaatcccagctactcaggaggctgaggca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539123 161 +  50890351 tcccagcactttagaaggccaaggcaggcagatcacctgaggtcaggagctcaagaccagcctggccaatatggtgaaatcccgtctctactaaaaatacaaaaattagccaggcgtggtggcaa-gcgactgtaatcccagctactcaggaggctgaggca
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45891745 156 +  49145316 tcccagcactttggg------aggcaggaggatctcatgaggtcatgagttcgagatcagcccaaccaacatggtaaatccccgtctgtactaaaaatacaaacattagctgggtgtggtggcaaggggactgtaatcgcagctactcaggaggctgaggca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e nomLeu3.chr10             103293465   0 - 106955855 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=27749.000000
s hg38.chr19_GL949751v2_alt    845187 28 +   1002683 ggagaatcacttgaacccaggaggcaga
s panTro4.chr19              59847066 28 +  63644993 ggagaatcacttgaacccaggaggcaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56757808 28 +  60714840 ggagaatcacttgaacccaagaggtgga
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55710497 28 +  59248254 ggaaaatcacttgaacccagggagcgga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47826066 28 +  51301725 ggaaaatcgcttgaacccagggagcgga
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45891901 21 +  49145316 ggagaatcgcttaaacccagg-------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e nomLeu3.chr10             103293465  0 - 106955855 C
e chlSab2.chr6               47539284  0 +  50890351 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=91418.000000
s hg38.chr19_GL949751v2_alt    845215 222 +   1002683 ggttgcactgagccgagatagcgccactgcactccagcctgggggacagagagagactctgtcttt-----------aaaaaaaaaaaaaaaaaaaaaaaattagccagctgtggtggtgtgtacctgtaatcccagctactcaggaggttgaggcaggaaaatcgcttcaacctgtgagaaggaggctgcagtgagtcaagatcgcgccactgcactccagcctgggcaac--a
s panTro4.chr19              59847094 235 +  63644993 ggttgtactgagccgagatagcgccactgcactccagcctgggcgacagagagagactctgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagccagctgtggtggtgtgtacctgtaatcccagctactcaggaggttgaggcaggaaaattgcttcaacctgtgagaaggaggctgcagtgagtcaagatcgcgccactgcactccagcctgggcaacaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56757836 217 +  60714840 ggttgcactgagctgagatagcgccactgcactccagcctgggcgacagagagagactctgtctt--------------aaaaaaaaaaaaaaaaaaaaaattagccagctgtggtg--gtgtacctgtaatcccagctactcaggaggttgaggcagaaaaatcgtttcaacctgtgagacagaggctgcagtgagtcaagatcgcgccactgcactccagcctgggcgac--a
i ponAbe2.chr19             C 0 I 6
s calJac3.chr22              45891922 217 +  49145316 --ttacagtgagctgagctagagccactgcattctaggctgggcaacagagtgagatttcatctc-------------agaaTACATATTATACACAAAAATTAgccaggcgtggtgctgcgtacctgtaatcccagctacagaggaggctga-gcaggagaatcacttgaacttgtgaagtaggggctgcagtgagtcaagactgcaccactgcactccagcctgggcaac--a
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e nomLeu3.chr10             103293465   0 - 106955855 C
e chlSab2.chr6               47539284   0 +  50890351 C
e papAnu2.chr19              47826094   0 +  51301725 C
e macFas5.chr19              55710525   0 +  59248254 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=2801.000000
s hg38.chr19_GL949751v2_alt    845437 11 +   1002683 --gtgagactcca
s panTro4.chr19              59847329 11 +  63644993 --gtgagactcca
i panTro4.chr19             C 0 C 0
s calJac3.chr22              45892139 13 +  49145316 gagcgagactcca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56758053  6 +  60714840 I
e nomLeu3.chr10             103293465  0 - 106955855 C
e chlSab2.chr6               47539284  0 +  50890351 C
e papAnu2.chr19              47826094  0 +  51301725 C
e macFas5.chr19              55710525  0 +  59248254 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=61169.000000
s hg38.chr19_GL949751v2_alt    845448 143 +   1002683 tcccaaaaagcaaaaaccaaaaaggccgggtgcaatggctcacctctgtaatcccaccactttgggaggccgaggcaggtggctcacctgaggtcaggagttcaagactagcctggccaacatggtgaaacccctctctacta
s panTro4.chr19              59847340 140 +  63644993 tcccaaaaagcaaaaaccaaaaaggccgggtgcaatggttcacctctgtaatc---ccactttgggaggccgaggcaggtggctcacctgaggtcaggagttcaagactagcctgggcaacatggtgaaacccctctctacta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56758059 143 +  60714840 tcccaaaaagcaaaaaacaaaaaggccgggtgcaatggctcacatctgcaatcccaccactttgggaggccaaggcaggtggctcacctgaggtcaggagttcaagactagcctggccaacatggtgaaacccctctctacta
i ponAbe2.chr19             I 6 I 7
s calJac3.chr22              45892152 131 +  49145316 tcccaaaaaggaaaaaa-aaaaagtccaggtacaatggctcatgtctgtaatcccagcactttggaaggccaagataggtggctcacccgaggtcaggagttc-agaccagcctggccaagatggtgaaatac----------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e nomLeu3.chr10             103293465   0 - 106955855 C
e chlSab2.chr6               47539284   0 +  50890351 C
e papAnu2.chr19              47826094   0 +  51301725 C
e macFas5.chr19              55710525   0 +  59248254 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=29303.000000
s hg38.chr19_GL949751v2_alt    845591 61 +   1002683 aaaaattagccaggcatggtggcaggcatctgtaattccagctacttgggagg-ccaaggtg
s panTro4.chr19              59847480 61 +  63644993 aaaaattagccaggcgtggtggcaggcatctgtaattccagctacttgagagg-ccaaggtg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103293465 61 - 106955855 aaaaattagccgggcgtggtggcaggcatctgtaatcccagctacttgggagg-ccaaggtg
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45892283 62 +  49145316 agaaattagctggatgtggtagtaggcacctgtaatcccagctacttgggaggcccaaggtg
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56758202  7 +  60714840 I
e chlSab2.chr6               47539284  0 +  50890351 C
e papAnu2.chr19              47826094  0 +  51301725 C
e macFas5.chr19              55710525  0 +  59248254 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=22225.000000
s hg38.chr19_GL949751v2_alt    845652 28 +   1002683 ggagaatcgcttgaacccaggaggtggg
s panTro4.chr19              59847541 28 +  63644993 ggagaatcgcttgaacccaggaggtggg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103293526 28 - 106955855 ggagaatcgcttgaacccaggaggtgga
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               47539284 28 +  50890351 agaaaatcgcttgaacccagggggtgga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45892345 28 +  49145316 ggagaattgcttgaacccgggacatgga
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56758202  7 +  60714840 I
e papAnu2.chr19              47826094  0 +  51301725 C
e macFas5.chr19              55710525  0 +  59248254 C
e rheMac3.chr19              60584536 274 +  64156825 I

a score=36775.000000
s hg38.chr19_GL949751v2_alt    845680 23 +   1002683 ggttgcagtgagccaagatcgca
s panTro4.chr19              59847569 23 +  63644993 ggttgcagtgagccaagatcgca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103293554 23 - 106955855 ggttgcattgagccaagatcgca
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55710525 23 +  59248254 gcttgcagtgagccgagatcgca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47826094 23 +  51301725 gcttgcagtgagccgagatcgca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539312 23 +  50890351 gcttgcagtgagccgagatcgta
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45892373 23 +  49145316 ggttccagtgagctgagatcata
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56758202  7 +  60714840 I
e rheMac3.chr19              60584536 274 +  64156825 I

a score=68094.000000
s hg38.chr19_GL949751v2_alt    845703 65 +   1002683 ccactgcactccagcctgggctacaagaacaaaactcc--gtctcaaaaaaaaaaaaagaaaaagaa
s nomLeu3.chr10             103293577 67 - 106955855 ccactgcactccagactgggctgcaagaacaaaactccccatctcaaaaaaaaaaaaagaaaaagaa
i nomLeu3.chr10             C 0 I 8
s macFas5.chr19              55710548 65 +  59248254 ccactgcactccagcctgggctacaagagcgaaactcc--gtctcaaaaaaaaaaaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47826117 65 +  51301725 ccactgcattccagcttgggttacAAGAGGgaaattcc--ttttcaaaaaaaaaaaaaaaaaaagaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539335 65 +  50890351 ccactgcactacagcctgggctacaagagcgaaactcc--atctcaaaaaaaaaaaaagaaaaaata
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45892396 63 +  49145316 tcactgcactccggcctaggctacaagagagaaactct--att--aaaaaaaaaaaaaaaaaaggaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e ponAbe2.chr19              56758202  7 +  60714840 I
e rheMac3.chr19              60584536 274 +  64156825 I
e panTro4.chr19              59847592  0 +  63644993 C

a score=4242.000000
s hg38.chr19_GL949751v2_alt    845768  4 +   1002683 --------aaaa
s ponAbe2.chr19              56758209  4 +  60714840 --------aaaa
i ponAbe2.chr19             I 7 C 0
s nomLeu3.chr10             103293652  4 - 106955855 --------aaaa
i nomLeu3.chr10             I 8 C 0
s macFas5.chr19              55710613  4 +  59248254 --------aaga
i macFas5.chr19             C 0 I 13
s papAnu2.chr19              47826182  4 +  51301725 --------aaaa
i papAnu2.chr19             C 0 I 8
s chlSab2.chr6               47539400  4 +  50890351 --------caaa
i chlSab2.chr6              C 0 I 1
s calJac3.chr22              45892459 12 +  49145316 agaaatacaaaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C
e rheMac3.chr19              60584536 274 +  64156825 I
e panTro4.chr19              59847592  0 +  63644993 C

a score=250450.000000
s hg38.chr19_GL949751v2_alt    845772 106 +   1002683 attagctggacatgttggcatgcctctaggcccagctactcatgaggctgaggcaggagaattgcttgaacctgagaggcagaggttgcggtgagccaagattgcg
s ponAbe2.chr19              56758213 106 +  60714840 attagccgggcatggtggcaggcctctaggcctagctactctggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgtggtgagccaagatcgcg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293656 106 - 106955855 attagctggacatgttggcatgcctctaggcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatctcg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60584810 106 +  64156825 attagctggacatgctggcgtgcctgtaggcccagctactcaggaggctgaggcaggagaattgcttgaacttgggaggcggaggttgcagtgagcctagatcgcg
i rheMac3.chr19             I 274 C 0
s macFas5.chr19              55710630 106 +  59248254 attagctggacatgctggcgtgcctgtaggcccagctactcaggaggctgaggcaggagaattgcttgaacttgggaggcggaggttgcagtgagccaagatcgcg
i macFas5.chr19             I 13 C 0
s papAnu2.chr19              47826194 106 +  51301725 attagctggacatgctggcgtgcctgtaggcccagttattcaggaggctgaggcaggagaattgcttgaacttgggaggcgggggttgcggtgagccaagatcgcg
i papAnu2.chr19             I 8 C 0
s chlSab2.chr6               47539405 106 +  50890351 attagctggacatgctggcatgcctgtaggcccagctactcaggaggctgaggcaggagaattgcttgaacttgggaggcggaggttgcggtgagccaagatcgcg
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45892471 106 +  49145316 attagctgggcgtgctggcacacctgtaggcccagctactcaggaggctgaggcaggagaattgcctgaacctgggaggcagaggttgcagtgagccaagatcaca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129   0 - 122678785 C
e panTro4.chr19              59847592   0 +  63644993 C

a score=135934.000000
s hg38.chr19_GL949751v2_alt    845878 89 +   1002683 ccactgcactccagcctgaatgacagagcacgactccatctcaaaaaaacaaaaacaaaaaacaaaacaaaacaaaa--caaaaAAC-CCAT
s panTro4.chr19              59847592 77 +  63644993 ccactgcactccagcctgaatgacagagcaagactccatctcaaaaaaacaaaa--------caaaacaaaacaaaa------AAAC-CCAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56758319 80 +  60714840 tcactgcactccagcctgagtgacagagcaagactccatctcaaaacaaaaaca---------aaaacaaaaacaaa--aaaaaaac-CCAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293762 84 - 106955855 ccattgcactccagcctgggtgacagagcaagactccatttcaaaacaaaaaac--------aaaaacaaaaaacaaaCAAAAAAACACCAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60584916 61 +  64156825 ccactgcactccggcctgggtgacagagcaagactccatgtc----------------------------aaaaaaa--aaaaaaaG-CCAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55710736 67 +  59248254 ccactgcactccggcctgggtgacagagcaagactccatgtc-------aaaaa---------------aaaaaaaa--aaaaaaaG-CCAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47826300 74 +  51301725 ccactgcattccggcctgggtgacagagcaagactccatgtcaaaaaaaaaaaa---------------aaaaaaaa--aaaaaaag-ccat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539511 60 +  50890351 ccactgcactccggcctgggtgacagagcaagactccatgtc-----------------------------aaaaaa--aaaaaaaG-CCAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45892577 57 +  49145316 ccactgcactccagcctgcgtgacagagcaagactccgtctc--------------------------------aaa--caaaaaaG-CTAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009129  0 - 122678785 C

a score=729774.000000
s hg38.chr19_GL949751v2_alt    845967 198 +   1002683 ACCTGAGTATCTTCAAGGATCCAGTTCTTTGTCTTAGAACCCCAAAGAGCTTAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGAGGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAATCC
s panTro4.chr19              59847669 198 +  63644993 ACCTGAGTGTCTTCAAGGACCCAGTTCTTTGTCTTAGAACCCCAAAGAGCTTAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGAGGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAACCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56758399 198 +  60714840 ACCTGAGTGTCTTCAAGCATCCAGTTCTTTGTCTTAGAACCCCAAAGAGCTTAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGAGGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAACCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103293846 198 - 106955855 ACCTGAGTGTCTTCAAGGATCCAGTTCTTTGTCTTAGAACCCCAAAGAGCTTAATTATGCCGCTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGATGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCACAGGCTGTTGAGGAAGAACATGGAAACCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60584977 198 +  64156825 ACCTGAGTGTCTTCAAGGATCCAGTTCTTTGTCTTAGAACCCTAAAGAGCTGAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGATGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAACCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55710803 198 +  59248254 ACCTGAGTGTCTTCAAGGATCCAGTTCTTTGTCTTAGAACCCTAAAGAGCTGAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGATGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAACCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47826374 198 +  51301725 accTGAGTGTCTTCAAGGATCCAGTTCTTTGTCTTAGAACCCTAAAGAGCTGAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGATGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAACCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539571 198 +  50890351 ACCTGAGTGTCTTCAAGGATCCAGTTCTTTGTCTTAGAACCCTAAAGAGCTGAATTATGCCACTCT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCAAGCTTCTGATTGCTGATGAGAGCAGATCCAAGATGCTGACAATAGAAAGGCATGAGGGAGCAGCTCCAGAGGCTGTTGAGGAAGAACATGGAAACCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45892634 198 +  49145316 ACCTGAGTGTCTTCAAGGATCCAGGTCTTTGTTTTAGAACCCCAAGGAGCTTAATGATGCCACTTT-TCCACAAATGATTCTGGCCCAGGTCCAGAGTTTCCAGCTTCTGATTGCTGATGAGAGCAGATCCAAGATGTTGGCAATAGAAAGGCAGAAGGGAGCAGCTCCAGAGGCTGTTGGGGAAGAACATGGAAACCC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20009129 197 - 122678785 ACCTGAGTATCTTTAGGGGGCCA--TTATTGTTTTAAAACCTCAAAGAGCACCATTATTCCACTCTGCCCTCAAGATATTCTGTCCTAGGTCCAGAGTTTCTAGCCACTGAATGCTGTTGAGAACAGGTGCGAGACCCTGACAACAGGAGGGAGTGATGGAATAGCCATAGAGCCTGTAGGGAAAGAGCACAGAAAACC
i canFam3.chr1              C 0 I 1851

a score=395019.000000
s hg38.chr19_GL949751v2_alt    846165 134 +   1002683 ACGCATTCACTGAGCAGGTAg-------------tggctcaagcgtgtaatcccaacacttcgggaggccaaggcgggtggatcacttgaggccaggtgttcgagaccagccttgccaacacggtcaaaccccatctctactaaaaa
s panTro4.chr19              59847867 134 +  63644993 ACGCATTCACTGAGCAGGTAg-------------tggctcacgcgtgtaatcccaacacttcgggaggccaaggcgggtggatcacttgaggccaggtgttcgagaccagccttgccaacacggtcaaaccccatctctactaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56758597 134 +  60714840 ACGCATTCACTGAGCAGgtgg-------------tggctcacgcctgtaatcccaacacttcgggaggccaaggcgggtggatcacttgaggccaggggttcgagaccagccttgccaacatggtcaaaccccatctctactaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103294044 134 - 106955855 ACACATTCACTGAGCAGGTAg-------------tggctcacacctgtcatcccaacactttgggaggccaaggcgggtggatcacttgaggccaggggttcgagaccagccttgccaacatggtcaaaccccatctctaataaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60585175 147 +  64156825 GTGCATTCACTGAGCAGGTAGTggccagatgccatggctcatgtctgtaatcccaacacttcaagaggccaaggcaggtggatcacttgaggccaggagctcgaaaccagccttgccaacatggtcaaaccccatctctattaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55711001 147 +  59248254 GTGCATTCACTGAGCAGGTAGTggccagatgccatggctcatgtctgtaatcccaacacttcaagaggccaaggcaggtggatcacttgaggccaggagctcgaaaccagccttgccaacatggtcaaaccccatctctattaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47826572 147 +  51301725 GTGCATTCACTGAGCAGGTAGTGGCCAGatgccatggctcatgtctgtaatcccagcacttcaagaggccaaggcaggtggatcacttgaggccaggagctcgaaaccagccttgccaacatggtcaaactccatctctattaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47539769 147 +  50890351 ATGCATTCACTGAGCAGGTAGTggccagatgccatggctcatgtctgtaatcccaacacttcaagaggccaaggcaggtggatcacttgaggccaggagctcgaaaccagccttgccaacatggtcaaaccccatctttattaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45892832 145 +  49145316 ATGCATTCACTGAGCAGGTAGGggccggatgccgtggctcacgcctgtaatcccagcactttgggaggcggaggcaggcggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccatctct--taaaaa
i calJac3.chr22             C 0 I 29
e canFam3.chr1               20009326 1851 - 122678785 I

a score=1029478.000000
s hg38.chr19_GL949751v2_alt    846299 459 +   1002683 tacaaagattaggcagggcgtggggacagacacctgtagccccagca-ccttgggaggccgaggagggtagatcacctgaggtcaggagttcgagaccagccaggccaacatggcaaaaccccatctctacaaaaaattagccatgcatggtggtgtgtgcctttaatgctagctacttgggaggctgaggcacaagaatcgcttcagcctgggaggcggaggttacagtgagcccagattgcgccactgcactccagcctgggcaatagaatgagactccatctcacaaatatataacataaaatgaaaatacaaaaattagccaggtatggtggaaccacctataattccagctactcga------gaggcaggagaatcgcctgaa-cca--ggaggcagaggttgtagttagccaacatatcaccactgcattccagcttgggtgaaagagtgagacttggtctc
s panTro4.chr19              59848001 459 +  63644993 tacaaagattaggtagggcgtggggacagacacctgtagccccagca-ccttgggaggccgaggagggtggatcacctgaggtcaggagttcgagaccagccaggccaacatggcaaaaccccatctctacaaaaaattagccatgcatggtggtgtgtgcctttaatgccagctacttgggaggctgaggcacaagaatcgcttcagcctgggaggcggaggttacagtgagccaagatcgcgccactgcactccagcctgggcaacagaatgagactccatctcacaaatatataacataaaatgaaaatacaaaaattagccaggtatggtggagccacctataattccaggtactcga------gaggcaggagaatcacctgaa-cca--ggaggcagaggttgtagtgagccaacatatcaccactgcattccagcttgggtgaaagagtgagacttggtctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56758731 458 +  60714840 tacaaagattaggcagggtgtgggggtaggcacctgtagccccagca-ccttgggaggccgaggagggtggatcacctgaggtcaggagttcgagaccagccaggccaacatggcgaaaccccatctctacaaaaaattagccgtgcatggtggtgtgtgcctttaatgccagctacttgggaggcggaggcacaagaatcgcttcagcctgggaggcggaggttacagtgagccaagatcgcgccactgtactccagcctgggcaacagaatgagactccatctcacaaatatataaaataaaatg-aaatacaaaaattagccaggtatgctggcaccacctgtaattccaactactcaa------gaggcaggagaatcgcttgaa-cca--ggaggcagaggttgtagtgagccaagatatcaccactgcattccagcttgggtgaaagagtgagacttggtctc
i ponAbe2.chr19             C 0 I 6
s nomLeu3.chr10             103294178 460 - 106955855 tacaaagattaggcagggcgtggggacaggcacctgtagccccagcattcttgggaggcagaggagggtggatcacctgaggtcaggagttcgagaccagccaggccaacatggcgaaaccccatctctacaaaaaattagccatgcatggtggtgtgtgcctttaatgccagctacttgggaggctgaggcacaagaatcgcttgagcctgggaggcggaggttacggtgagccaagatcacgccactgcactccagcctaggcaatagaatgagactccatctcacaaatatataaaat-aaatgaaaatacaaaaattagccaggtatagtggcgccacctgtaattccaactactcaa------gaggcaggagaatcgcttgaaccca--ggaggcagaggttgtagtgagccaacgtatcatcactgcattccagcttgggtgaaagagtgagacttggtctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60585322 462 +  64156825 tgcaaagatgaggcagggtgtggaggcaggcacctgtaatcccagca-ccttgggaggctaaggaaggtggatcacctgagttcaggagtttgagaccagccaggccaacatggtgaaaccccatctctacaaaaaattagccacacatggtggtgagtgcctttaatgccagctacttgggaaggtgaggcacaagaatcactggagcctgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacagagtgaaactccatctcataaataaat-acataaaacgaaaatacaaaaattagccaggtatggtgttgccacctgtcattccaactactcgagaggctgaggcaggagaattgcttgaaccca--ggaggcagaggttgtagtgagccgacatatcaccactgcactgcagcttgggtggaagagtgagactcggt---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55711148 467 +  59248254 tgcaaagatgaggcagggtgtggaggcaggcacctgtaatcccagca-ccttgggaggctaaggaaggtggatcacctgagttcaggagtttgagaccagccaggccaacatggtgaaaccccgtctctacaaaaaattagccacacatggtggtgagtgcctttaatgccagctacttgggaaggtgaggcacaagaatcactggagcctgggaggcagaggttgcagtgagtgaagatcatgccactgcactccagcctgggcaacagagtgaaactccatctcataaataaat-acataaaacgaaaatacaaaaattagccaggtatggtgttgccacctgtcattccaactgctcgagaggctgaggcaggagaattgcttgaacccaggggaggcagaggttgtagtgagccgagatcacaccactgcactccagcctgggcaacagagtgaaactccatctc
i macFas5.chr19             C 0 I 13180
s papAnu2.chr19              47826719 465 +  51301725 tgcaaagatgaGGCAGGGTGTgaaggcaggcacctgtaatcccagca-ccttgggaggctaaggaaggtggatcacctgagttcaggagtttgagaccagccaggccaacatggtgaaaccccatctctacaaaaaattagccacgcatggtggtgagtgcctttaatgccagctacttgggaaggtgaggcacaagaatcactggagcctgggaggcagagattgcagtgagcgaagatcgtgccactgcactccaggctgggcaacagagtgaaactccatctcataaataaat-ccatacaatgaaaatacaaaaattagccaggtatggtgtagCCACCTGTCATTCCAACTAGTcaagacgctgaggcaggagaattgcttgaaccca--ggaggcagaggttgtagtgagccaacatatcaccactacactgcagcttgggtggaagagtgagactcggtctc
i papAnu2.chr19             C 0 I 3
s chlSab2.chr6               47539916 465 +  50890351 tgcaaagatgaggcagggtgtggaggcaggcacctgtaatcccagca-ccttgggaggctaaggaaggtggatcacctgagttcaggagtttgagaccagccaggccaacatagtgaaaccccatctctacaaaaaattagccacgcatggtggtgagtgcctttaatgccagctacttgggaaggtgaggcacaagaatcgcttgagcctgggaggcagaggttgcagtgagccaggatcgtgccactgcactccagcctgggcaacagagtgaaactccatctcataaataaat-ccataaaatgaaaatacaaaaattagccaggtatggtgttgccacctgtcattccaactactcgagaggctgaggcaggagaattgcttgaaccca--ggaggcagaggttgtagtcagccaacatatcaccactgcactgcagcttgggtggaagagtgagactcggtctc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009326 1851 - 122678785 I
e calJac3.chr22              45892977  29 +  49145316 I

a score=330548.000000
s hg38.chr19_GL949751v2_alt    846758 172 +   1002683 aaacaaaacaaaacaaaaaaacaaGCAGCATATTTGCTGGGGCTCCAGTAGTGAGGAAAGGCAGAGGGG-AGTGAGCAGAAGAAATCCTTGTCCTC--AGAGT---TTTTAGT-------GACAGCAGACATCTCGATATGTTCTATTGAAGACAATGGATGATGGTATTAAAATAAACAGGGTA
s panTro4.chr19              59848460 172 +  63644993 aaacaaaacaaaacaaaaaaacaaGCAGCATATTTGCTGGGGCTCCAGTAGTGAGGAAATGCAGAGGGG-AGTGAGCAGAAGAAATCCTTGTCCTC--AGAGT---TTTTAGT-------GACAGCAGACATCTCGATATGTTCTATTGAAGACAATGGATGATGGTATTAAAATAAACAGGGTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56759195 175 +  60714840 aaacaaaacaaaacaaaaAAACAAGCAGCAtatttgctggggctccagtagtgaggaaatgcagaggggaagtgagcggaagaaatccttgtcctcatagagc---ttttagt-------GACAGCAGACATCTCGATGTGTTCTATTGAAGACAATGGATGATGGCATTAAAATAAACAGGGTA
i ponAbe2.chr19             I 6 C 0
s nomLeu3.chr10             103294638 172 - 106955855 aacaaaaaaaaaaaaaaaaaacaaGCAGCATATTTACTGGGGCTTCAGTAGTGAGGAAATGCAGAGGGG-AGTGAGCAGAGCAAATCCTTGTCCTT--AGAGT---TTTTAGT-------GACAGCAGACACCTCGATATGTTCTATTGAAGACAATGGATGATGGTATTAAAATAAACAGGGTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60585784 176 +  64156825 aaaaaaaaaaaaaaaaaaaaaaaaGGAACATTTGTGCTGGGAATCCAGTACTGAGGAAATGCAGAGAGG-AGTGAGATGAAGAAATCCT------C--AGAGTTTATTTTAGTGACAGCAGACAGCAGACATCCGGATGTGTTCTATTGCAGACAATGGATGATGGTATTAAAATAAACAGGGTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55724795 171 +  59248254 aaaaaaaaaaaaaaaaaaaaaaaaGCAACATATGTGCTGGGGATCCAGTACTGAGGAAATGCAGAGAAG-AGTGAGATGAAGAAATCCG----CAC--AGAGTTTATTTTAGT-------GACAGCAGACATCCGGATGTGTTCTATTGAAGACAATGGATGATGGTATTAAAATAAACAGGATA
i macFas5.chr19             I 13180 C 0
s papAnu2.chr19              47827187 158 +  51301725 aaaaaaaaaaaaaaaaaaaaaaaagcaacatatgTGCTGGGGATCCAGTACTGAGGAAATGCAGAGAGG-AGTgagatgaagaaa-------------------tattttagt-------gACAGCAGACATCTGGATGTGTTCTATTGAAGACAATGGATGACGGTATTAAAATAAACAGGATA
i papAnu2.chr19             I 3 C 0
s chlSab2.chr6               47540381 162 +  50890351 ---------aaaaaaaaaaaaaaaagaaCATTTGTGCTGGGGATCCAGTACTGAGGAAATGCAGAGAGG-AGTGAGATGAAGAAATCCT----CAC--AGAGTTTATTTTAGT-------GACAGCAGACATCCGGATGTGTTCTATTGAAGACAATGGATGATGGTATTAAAATAAACAGGGTA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009326 1851 - 122678785 I
e calJac3.chr22              45892977  29 +  49145316 I

a score=691481.000000
s hg38.chr19_GL949751v2_alt    846930 288 +   1002683 GAGGTAAGTCAAACAGAGAGGCATTGATTGGCTAGACTTATGCTGGTCATTTAAGTCCTCTT-------------------TTGGAAAGTGATATGAGGAAAGAAACTGAAGGATGGTAGATCATGAACCAGCATGCTAACTGGGGGAGGGAATCTTGTAAATAAAATACtgagctagtgagaaagtagaatgatttatggctcataacttacacgaggatccccca-----taaggccctgtaggccactgtagaagcctttgg------ttttgtttttttt----aaggcagagtttcactcttgttgccaaggctgga
s panTro4.chr19              59848632 292 +  63644993 GAGGTAAGTCAAACAGAGAGGCATTGATTAGCTAGACTTATGCTGGTCATTTAAGTCCTCTT-------------------TTGGAAAGTGATATGAGGCAAGAAACTGAAGGATGGTAGATCATGAACCAGCATGCTAACTGGGGGAGGGAATCTTGTAAATAAGATACtgagctagtgagaaagtagaatgatttatggctcataacttacacgaggatccccca-----taaggccctgtaggccactgtaaaagccttTGA------ttttgttttttttttttaaggcagagtttcactcttgttgccaaggctgga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56759370 281 +  60714840 GAGGTAAGTCAAACACAGAGGCATTG----GCTAGACTTATGCTGGTCATTTAAGTCCTCTT-------------------TTGGAAAGTGATATGAGGAAAGAAACTGAAGGATGGTAGATCATGAACCAGCATGCTAATTGGGGGAAGGAATCTTGTAAATAAAATACtgagctagtgagaaagtagaatgattt-tggctcataacttataagaggat--ccca-----taaggccctgtaggccactgtaaaagcctttgg------Atttttttttttt----aaggcagagtttcactcttgttgccaaggctgga
i ponAbe2.chr19             C 0 M 381
s nomLeu3.chr10             103294810 282 - 106955855 GAGGTAAGTCAACCAGAGAGGCATTG----GCTAGACTTATGCTGGTCATTTAAGTCCTCTT-------------------TTGGAAAGTGATATGAGGAAACAAACTGAAGGATGGTAGATCATGAACCAGCATGCAAATAGGGGAAAGGAATCTTGTCAATAAAATACTGAGCTAGTGAAAAAGTAGAATGATTT-TGGCTCATAACTTATAAGAGGAT--CCCA-----TAAGGATCTGTAGACCACTGTAAAAGCCTTCGA------ttttttttttttt---taagacagaggttagctcttgttgccaaggctgga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60585960 276 +  64156825 GAGGTAAGTCAACCAGAGAGGCACTG----GCTAGATTTATGCCAGTCATTTAAGTTCTCTC-------------------TGGGAAAGTGATATGAGGGAAAAAACTGAAGGATGTTAGATCATGAACCAGCTTGCTAATTGAGAGAAGGAATCTTGTCAATAAAATACtgagctagtaagaaagtagaatgattt-tggctcataactgataagacgag--acca-----taaggccctgtaggccactgtaaaagccttagA---------tttttttttt----aagac--agtttcgctcttgttgcccaggctgga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55724966 295 +  59248254 GAGGTAAGTCAACCAGAGAGGCACTG----GCTAGATTTATGCCGGTCATTTAAGTTCTCTCTGGGAAATCTTGTTCTCTTTGGGAAAGTGATAGGAGGAAAAAAACTGAAGGATGTTAGATCGTGAACCAGCTTGCTAATTGAGGGAAGGAATCTTGTCAATAAAATACtgagctagtaagaaagtagaatgattt-tggctcataactgataagacaag--acca-----taaggccctgtaggccactgtaaaagccttagA---------tttttttttt----aagac--agtttcgctcttgttgcccaggctgga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47827345 277 +  51301725 GAGGTAAGTCAACCAGAGAGGCACTG----GCTAGATTTATGCCAGTCATTTAAGTTCTCTC-------------------TGGGAAAGTGATATGAGGGAAAAAACTGAAGGATGTTAGATCGTGAACCAGCTTGCTAATTGGGGGAAGGAATCttgtaaataaaatactgagCTAGTGAGAAAGTAGAATGATTT-TGGCTCATAACTGGTAAGACGAG--ACCA-----TAAGGCCCTGTAGGCCACTGTAAAagccttaga--------ttttttttttt----aagac--agtttcgctcttattgcccaggctgga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47540543 278 +  50890351 GAGGTAAGTCAACCAGAGAGGCACTG----GCTAGATTTATGCCGCTGATTTaagttctctc-------------------tgggaaagtgatatgagggaaaaaactgaaggatgttagatcgtgaaccagcttgctaattgggggaagGAATCTTGTAAATAAAATACTGAGCTAGTGAGAAAGTAGAATGATTT-TGGCTCATAACTGATAAGACAAG--ACCA------------CTGTAGGCCACTGTAAAAGCCTTTGAttttttttttttttttttt----aagac--agtttcgctcttgttgcccaggctgga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45893006 243 +  49145316 GAGGTAAGTCAACCAGGGCAGCATTG----GCTAGATTTATGCTGGTCATTCAAGTCCTCTT-------------------TGGGAAAGTGATATGAGGAAAAAAACTGAAGAATGGTAGATCATGAACCA----GCTAATCTGGGGAAGGAATTTTGCTAATCAAATACtgagctagtgagaaagtagaataagtt-tggctcataacttacaagaagat--ctcataatgtaaggccctataggccactgtaaaagcctttaa------attttTTT-------------------------------------------
i calJac3.chr22             I 29 C 0
e canFam3.chr1               20009326 1851 - 122678785 I

a score=106621.000000
s hg38.chr19_GL949751v2_alt    847218 61 +   1002683 gtgcaatggcgtgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcct
s panTro4.chr19              59848924 61 +  63644993 gtgcaatggcgtgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103295092 61 - 106955855 gtgcaatggcaccatctcggctcactgcaacctctgcctcccaggttcaagtgattctcct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60586236 61 +  64156825 gtgcaatgacgtgatctcagctcactgcaacttctgcctcccaggttcaaatgattctcct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55725261 61 +  59248254 gtgcaatgacgtgatctcagctcactgcaacttctgcctcccaggttcaaatgattctcct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47827622 61 +  51301725 gtgcaatgacatgatctcggctcactgcaacttccgcctcccaggttcaagtgattctcct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47540821 61 +  50890351 gtgcaatgacgtgatctcggctcactgcaacttccgcctcccaggttcaagtgattctcct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45893249 24 +  49145316 --------------------------------tccacctctt--gttcaagcaattct---
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20009326 1851 - 122678785 I
e ponAbe2.chr19              56759651 381 +  60714840 M

a score=895896.000000
s hg38.chr19_GL949751v2_alt    847279 342 +   1002683 gccccagcctcccgagaatctaggattacagTCATAGCTGA---GATTACAGGAACAAG-----------------------------------------------------------------------ACACCAGGTAATCCACCC----GTTTGCATTGAGCTTTTGAGTCTTTGGAAATA--AAGGTATCACGGTCTGGCTTGAGGCTTGAAATATTCCTCAGGGGGATGGGTTAAG-------AAACTTCAGGAggccaggaatggtggctcatgcc--------tgtaatcccagcactttgggaggttgaggcaggtggatcacttgaggtcaggagtttgagaccagtctggctaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggtatggtggtgcacgcctgtaatcccaac
s panTro4.chr19              59848985 342 +  63644993 gcctcagcctcccgagaatctaggattacagTCATAGCTGA---GATTACAGGAACAAG-----------------------------------------------------------------------ACACCAGGTAATCCACCC----ATTTGCATTGAGCTTTTGAGTCTTTGGAAATA--AAGGTGTCACGGTCTGGCTTGAGGCTTGAAATGTTCCTCAGGGGGATGGGTTAAG-------AAACTTCAGGAggccaggaatggtggctcatgcc--------tgtaatcccagcactttgggaggttgaggcaggtggatcacttgaggtcaggagtttgagaccagtctggctaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggtatggtggtgcacgcctgtaatcccaac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56760032 346 +  60714840 GCCCCAGCCTCCCGAGAATCTAGGATTACAGGCATAGCTGA---GATTACAGGCACAAG-----------------------------------------------------------------------ACACCAGGTAATCCACCCCTTTATTTGCACTGAGCTTTTGAGTCTTTGGAAATA--AAGGTGTCACGGTCTGGCTTGAGGCTTGAAATGTTCCTCAGGGTGATGGGTTAAG-------AAACTTCAGGAggccaggaatggtggctcatgcc--------cataatcccagcactttgggaggctgaggcaggtggatcacttgaggtcaggagtttgagaccagtctggccaacatggtgaaaccccgtctttactaaaaatgcaaaaattagctgggtatggtggtgcacacctgtaatcccagc
i ponAbe2.chr19             M 381 C 0
s nomLeu3.chr10             103295153 357 - 106955855 gccccagcctcctgagaatctaggattacaggcATAGCTGGGATGATTACAGGCACAAG-----------------------------------------------------------------------ACACCAGGTAATCCACCCCTTTATTTGCACTGAGCTTTTGAGTGTTTGGAAATA--AAGGTGTCACAGTCTGGCTTGAAGCTTGAAATGTTCGTCAGGGTGATGGGTTAAG-------AAACTTCAGGAggccaggaacggtggctcatgcctacacgattacaatcccagcattttgggaggctgaggcaggtggatcgcttgaggtcaggagtttgagaccagtctggccaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggtatggtggtgcatgcctgtaatgccaac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60586297 329 +  64156825 gccccagcctccggagaatctag---------------------gattacaggcacaag-----------------------------------------------------------------------cca-cAGGTGATCCACTCCTTTATTTGCACTGAGCTTTTGAGTCTTTGGAAATAGTAAGGTGTCACGGTCTGGCTTGCAGCTTGAAATGTTCCTCAGGGTGATGGGTTAAG-------AAATTTCAGGAggacaggaacagtggctcatgcc--------tgtaatctcagtactttgggaagctgaggcaggtggatcacttgaggtcaggagttggagaccagcccggccaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggcatgatggtgcacccctgtaatcctagc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55725322 330 +  59248254 gccccagcctccgcagaatctag---------------------gattacaggcacaag-----------------------------------------------------------------------ccaccaGGTGATCCACTCCTTTATTTGCACTGAGCTTTTGAGTCTTTGGAAATAGTAAGGTGTCATGGTCTGGCTTGCAGCTTGAAATGTTCCTCAGGGTGATGGGTTAAG-------AAACTTCAGGAGGACAGGAAcagtggctcatgcc--------tgtaatcccagtactttgagaggctgaggcagggggatcacttgaggtcaggagttggagaccagcccagccaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggcatggtggtgcacccctgtaatcctagc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47827683 330 +  51301725 gccccagcctccggagaatctag---------------------gattacaggcacaag-----------------------------------------------------------------------ccaccaggTGATCCACTCCTTTATTTGCACTGAGCTTTTGAGTCTTTGGAAATAGTAAGGTGTCACGGTCTGGCTTGCAGCTTGAAATGTTCCTCAGGGTGATGGGTTAAG-------AAACTTCAGGAGgacaggaacagtggctcatgcc--------tgtaatcccagtactttgggaagctgaggcaggtggatcacttgaggtcaggagttgcagaccagccccgccaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggcatggtggtgcacccctgtaatcctagc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47540882 330 +  50890351 gccccagcctccggaaaatctag---------------------gattacaggcacaag-----------------------------------------------------------------------ccaccaGGTGATCCACTCCTTTATTTGCACTGAGCTTTTGAGTCTTTGGAAATAGTAAGGTGTCACGGTCTGGCTTGCAGCTTGAAATGTTCCTCAGGGCGATGAGTTAAG-------AAACTTCAGGAggacaggaacagtggctcttgcc--------tgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggtcaggagttggagaccagcccagccaacatggtgaaacctggtctctactaaaaatacaaaaattagctgggcatggtggtgcacccctgtaatcctagc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45893273 406 +  49145316 gccccagcctcctgagtagctga---------------------gattacagacgcgagctaccacacacagctaatttttgtgttttcagtagagacggggtttcgccatgttggtctggaacccctgaccctcaggtgatccatccCTTTATGTGCACTAAGCTTTTGAGCCTTTGGAACAA--AAGGTGTCATGGTCTGACTTGCCGTTTAGAACGTTCCTCAGGGTGATGGGAGAAGTTTCTTAAAACTTCAGGAggtcaggaatggcggcttatgcc--------tgcaatgccagcactttgggaaggcgaggcttgtggatcacttgaggtcaggaatttgagaccagcctggccaacatggtgaaaccaggtctgtattaaaaatacaaaaagtggccgggcacaatggctcaagcctgtaatcccagc
i calJac3.chr22             C 0 I 278
e canFam3.chr1               20009326 1851 - 122678785 I

a score=270628.000000
s hg38.chr19_GL949751v2_alt    847621 113 +   1002683 tactcagctcaatcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatcgcaccactgcactccagcctgggtgacaaagcgagactctgtctgaaaaa
s panTro4.chr19              59849327 113 +  63644993 tactcagctcaatcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatcgcaccactgcactccagcctgggtgacagagcgagactctgtctgaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56760378 113 +  60714840 tactcagctgaatcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatcacaccactgcactccagcctgggtgacagagtgagactctgtctgaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103295510 117 - 106955855 tgcttggctgaatcaggagaatcgcttgaaccttggaggctgaggttgcagtgagccaagcaagatggcatcactgcactccagcctgggtaacagagcgagactctgtctgaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60586626 113 +  64156825 tacttagctgaggcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatggcaccactgcactccagtctgggtgacagagcgagacttcgtctcaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55725652 113 +  59248254 tacttagctgaggcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatggcaccactgcactccagtctgggtgacagagcgagactccgtctcaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47828013 113 +  51301725 tacttagctgaggcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatggcaccactgcactccagtctgggtgacagagcgagactccgtctcaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47541212 113 +  50890351 tacttagctgaggcaggagaatcgcttgaaccttggaggctgaggttgcagtgagc----caagatggcaccactgcactccagtctgggtgacagagtgagactccgtctcaaaaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20009326 1851 - 122678785 I
e calJac3.chr22              45893679 278 +  49145316 I

a score=899236.000000
s hg38.chr19_GL949751v2_alt    847734 373 +   1002683 agaaaaaaaGTACCCTGTGTTCTAGTGTTTTTTTTCTTTACTCTACAGCAAAGCTAAGTAGTAATG-AC---GTGCAGATTCTCTTTGCATTAGGATTGCAGATTCTAGTTGGAAAATAGGTTGCATCCAAGAGATGCAACTGAC--AAACTTTGGGGAGAGAAGTGATGAA-----GAGCTCGCCATTCCATTTGTGGAGACTTTGCATTTTCT--GGGGGTGGTATCCCACCTATGGTTCCCTGGGTTTATGAGGTGGGGCAGGCTCACTGCTTCCTGATTACTGGATCCCAGCAGAAGCAGC-ATGCTGCTGAAGTCCAGGTCACTGGGGGCCATTGTTATATATATTTCACTTCTCCAGG---CCCTCTACCTGACTTTAGAAGTG
s panTro4.chr19              59849440 373 +  63644993 agaaaaaaaGTACCCTGTGTTCTAGTGTTTTTTTTCTTTACTCTACAGCAAAGCTAAGTAGTAATG-AC---GTGCAGATTCTCTTTGCATTAGGATTGCAGATTCTAGTTGGAAAATAGGTTGCATCCAAGAGATGCAACTGAC--AAACTTGGGGGAGAGAAGTGATGAA-----GAGCTCGCCATTCCATTTGTGGAGACTTTCCATTTTCT--GGGGGTGGTATCCCACCTATGGTTCCCTGGGTTTATGAGGTGGGGCAGGCTCACTGCTTCCTGATTACTGGATCCCAGCAGAAGCAGC-ATGCTGCTGAAGTCCAGGTCACTGGGGGCCATTGTTATCTATATTTCACTTCTCCAGG---CCCTCTACCTGACTTTAGAAGTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56760491 378 +  60714840 agaaaaaaaGTACCCTGTGTTCTAGTGTTTTTTTTCTTGTCTCTACAGCAAAGCTAAGTAGTAATG-ACATTATGCAGATTCTCTTCGCATTAGGATCGCAGATTCTAGTTGGAAAATAGGTTGCATCCAAGAGATGCAACTGAC--AAACTTGGGGGAGAGAAGTGATAAA-----GAGCTCACCATTCCATTTGTGGAGACTTTGCATTTCCTGGGGGGGGGGTATCCCACCTATGGTTCCCTGGGTTTATGAGGTGGGGCAGGCTCACTGCTTCCCGATTACTGGATCCCAGCAGAAGCAGC-ATGTTGCTGAAGTCCAGGTCACTGGGGGCCATTCTCATCTATATTTCACTTCTCCAGG---CCCTCTACCTGACTTTGGAAGTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103295627 376 - 106955855 acaaaaaaaGTACCCTGTGTTCTAGTGGTTTTTTTCTTGTCTCTACAGCAAAGCTAAGTAGTAATG-ATATTATGCAGATTCTCTTCACATTAGGATTGCAGATTCTAGTTGGAAAATAGGTTGCATCCAAGAGATGCAATTGAC--AAAGTTGGGGGAGAGAAGTGATGAA-----GAGCTCGCCATTCCATTTGTGGAGACTTTGCATTTCCT--GGGGGTGGTATCCCACCTGTGGTTCCCTGGGTTTATGAGCTGGGGCAGGCTCACTGCTTCCTGATTCCTGGATCCCAGCAGAAGCAGC-ATGTTGCTGAAGCCCAGGTCCCTGGGGGCCATTCTCATCTATATTTCACTTCTCCAGG---CCCTCTACCTTACTTTGGAAGTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60586739 372 +  64156825 ag-aaaaaaGTACCCTGTGTTCTGGTG-TTTTTTTCTTGTCTTTACAGCAAAGCTAAGTAATAATG-ACATGATGCAGATTCTCTTCTCATTAGGATTGCAGATTCTAGTTGGAAAATAGGGTGCATCCAAG-GATGCAACCGAC--AAGCTTCGGAGAGAGAAGTGATAAA-----CAGCTCACTGTTCCATTTGTGGAGGCTTTGCATTTCCT---GGGGTGGTATCCCATCTCCAGTTCCCT-GGTTTATGAGCTGGGGCAGGCTCACGGCTTCCTGATTACTGGATCCCAGCAGAAGCAGCCATGTTCCTGAAGTCCAGGTCACTGGGGGCCATTCTCACCTATATTTCACTTCTCCAGG---CTCTCTACATGACTTTGGAAGTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55725765 374 +  59248254 ag-aaaaaaGTACCCTGTGTTCTGGTG-TTTTTTTCTTGTCTTTACAGCAAAGCTAAGTAGTAATG-TCATGATGCAGATTCTCTTCTCATTAGGATTGCAGATTCTAGTTGGAAAATAGGGTGCATCCAAG-GATGCAACTGAC--AAGCTTCGGAGAGAGAAGTGATAAA-----CAGCTCACTGTTCCATTTGTGGAGGCTTTGCATTTCCT---GGGGTGGTATCCCATCTCCAGTTCCCTGGGTTTATGAGCTGGGGCAGGCTCAcggcttcctgattactggatcccagcagaagcagccatgttcctgaagtccaggtcactgggggccATTCTCACC--TATTTCACTTCTCCAGGCCCCCCTCCACATGACTTTGGAAGTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47828126 365 +  51301725 agaaaaaaagtacccTGTGTTCTcgtgttttttttcttgtctctacAGCGAAGCTAAGTAGTAATG-ACACGATGCAGATTATCTTCTCATTAGGATTGCAGATTCTAGTTGGAAAATAGGTTGCATCCAAG-GATGCAACTGAC--AAGCTTCGGAGAGAGA---------------AGCTCACTGTTCCATTTGTGGAGGCTTTGCATTTCCT---GGGGTGGTATCCCATCTCCAGTTCCCTGGGTTTATGAGCGGGGGCAGGCTCACGGCTTCCTGATTACTGGATCCCAGCAGAAGCAGCAATGTTCCTGAAGTCCAGGTCACTGGGGGCCATTCTCACCTATATTTCACCTCTCCAGG---CCCTCTACATGACTTTGGAAGTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47541325 374 +  50890351 agaaaacaaGTACCCTGTGTTCTCGTG-TTTTTTTCTTATCTCTACAGCAAAGCTAAGTAGTAATG-TCATGATGCAGATTCTCTTCTCATTAGGATTGCAGATTGTAGTTGGAAAATAGGTTGCATCCAAG-GATGCAACTTAC--AAACTTCGGAGAGAGAAGTCATAAA-----CAGCTCATTATTCCATTTGTGGAGGCTTTGCATTTCCT---GGGGTGGTATCCTATCTCCAGTTCCCTGGGTTTATGAGCTGGGGCAGGCTCACAGCTTCCTGATTACTGGATCCCAGGAGAAGCAGCAATGTTCCTGAAGTCCAGGTCACTGGGGGCCATTCTCACCTATATTTCACTTCTCCAGG---CCCTCTACATGACTTTGGAAGTG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20011177 370 - 122678785 AAAACAGAAACACCATACAttttgatg--ttctttctcatttctaca---aggctaggaaagcatgtacatgacccagattcagtttgcattag-------ggttttagttgtaaagcatgttgcatcaataagatgcatttaatggaggcttgtgaaggagaagtgatgtacagcccaGCCCACCATCCCATTGATGGAGCCACTGCATTTCAA--AGGGGCAATATTC-GTCCACAGTCCCCTGGGCAC-CAAGCTGGGGAAGTCTCTGTGTGCCCTGCTCACTAGATCCCAGTAGAAGCAGT-GTTCTCCTGAAGCCTACTCTGCTAGAGGCCATCCCCATCTGTATCCCACTCCTCCAGG---CCCTCAGAATAACCCtgaaagtg
i canFam3.chr1              I 1851 I 236
e calJac3.chr22              45893679 278 +  49145316 I

a score=798474.000000
s hg38.chr19_GL949751v2_alt    848107 390 +   1002683 CCCACCCACATATATTCAGTTTCTGGAGGGGTTTGATCTTAAAACTGGATCCGAAGTGATACAGTCTGAGATATTGAAAACATAGAAATTggccgggcgtggtggctcacgcctgtaatcccagcactttggaaggccaaggcgggcagatca--tgaggtcaggagatcgagaccatcctggctaacactgtgaaaccc-atctctactaaaaatacaaaaaaaattagccaggcacggtggcgggcatctgtagtcccagctactcaggaggctgaggcaggagaatagcgagaacccgggaggaagaggttgcagtaagccgagatcgcgccactgcactccagcctgggcaactagaacgaggctccgtctc----a-------aaaaaaaaaaaaaaaa
s panTro4.chr19              59849813 388 +  63644993 CCCACCCACATATATTCAGTTTCTGGAGGGGTTTGCTCTTAAAACTGGATCCGAAGTGATACAGTCTGAGATATTGAAAACATAGAAATTggccaggcgtggtggctcacgcctgtaatcccagcactttggaaggccaaggcgggcagatca--tgaggtcaggagattgagaccatcctggctaacactgtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcacggtggcgggcgtctgtagtcccagctactcaggaggctgaggcaggagaatagcgagaacccgggaggaagaggttgcagtgagccgagatcacgccactgcactccagcctgggcaactagaacgaggctccgtctc----a-------aaacaaaaaaaaa---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56760869 384 +  60714840 CCCACCCACCTGTATTCAGTTTCTGGAGGGGTTTACTCTTAAAACTGCATCCAAAGTGAT--AGTCTGAGATACTGAAAACATAGAAATTggccgggcgtggtggcccacgcctgtaatcccagcactttgggaggccgaggcaggcagatca--tgaggtcaggagatcgagaccatcctggctaacactgtgaaaccccatctcttctaaaaatacaaaaaaaattagccgggcatggtggcgggcgtctgtagtcccagctactcgggaggctgaggcaggagaatagcgagaacccgggaggaagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaactagagcgaggctccatctc----a-------aaaaaaataaa-----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103296003 351 - 106955855 CCCACCCACCTATATTCAGTTTCTGGAGGGGTTTGCTCTTGAAACTGCATTCA--------------------------------------gctgggcgtggtggctcatgcctataatcccagcactttgggaggctgaagcaggcggatcacctgaagtcaggagttcgagaccagcctgaccaacatggggaaaccccgtctctactaaaaatac----agaattagccgggcatggtggcacatgcctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacaaaagtgaaactccttctc----a-------aaaaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 I 302
s rheMac3.chr19              60587111 392 +  64156825 ACCACCCACCTATATTCAGTTTCTGGAGGGGTTTGCTCTTAAAACTGGATCCAAAGTGATACAGTCTGAGATACTGAAAACATAGAAATTgaccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccaagacaggcggatca--tgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctactaaaaatac--aaaaaattagctgggcgtggtggcgggcatctgtagtcccagctacccaggaggctgaggcaggagaatctcttgaacctgggaggtggaggttgcagtgagccaagatcatgccattgcactccagcctgggcgac-agagcgagactccatgtcaaataaataaataaataaata-------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55726139 388 +  59248254 CCCACCCACCTATATTCAGTTTCTGGAGGGGTTTGCTCTTAAAACTGGATCCAAAGTGATACAGTCTGAGATACTGAAAACATAGAAATTgaccgggcgtggtggctcacgcctgtaatctcagcactttgggaggccaagacaggcggatca--tgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctactaaaaatac--aaaaaattagctgggcgtggtggcgggcatctgtagtcccagctacccaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagccaagatcatgccattgcactccagcctgggcgac-agagcgagactccatgtc----aaaaaaataaataaata-------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47828491 380 +  51301725 CCCACCCACCTATATTCAGTTTCTGGAGGGGTTTGCTCTTAAAACTGGATCCAAAGTGATACAGTCTGAGATATtgaaaacatagaaattgaccgggtgcagtggcttacacctgtaattccagcactttgggaggccgagacaggcggatca--tgaggtcaggagatcaacaccatcctggctaacacagtgaaaccccatctctactaaaaatac--aaaaaattagctgggcgtggtggcgggcatctgtagtccaagctacccaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagccaagatcatgccattgcactccagcctgggcgac-agagcgagactccatatc------------aaataaata-------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47541699 382 +  50890351 CCCACCCACCTATATTCAGTTTCTGGAGGGGTTTGCTCTTAAAACTGGATCCAAAGTGATGCAGTCTGAGATAGTGAAAACATAGAAATTgaccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatca--tgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctactaaaaatac--aaaaaattaactgggtgtggtggcgggcatctatagtcccagctacccaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagccaagatcacgccattgcactccagcctgggcaactagagcgagactctgtgtc----a-------aaaaaaaaa-------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20011547 236 - 122678785 I
e calJac3.chr22              45893679 278 +  49145316 I

a score=292195.000000
s hg38.chr19_GL949751v2_alt    848497 131 +   1002683 aagaaaaCATAGAAATTAAGGATTTCCAGATTTCCAAACACTTTAAAAATGAggccaggcatgatggctcatgcctgtaatcctagcacattgggaggccgaggtgggaggattccttgagcaccagaatt
s panTro4.chr19              59850201 129 +  63644993 --gaaaacatagaaaTTAAGGATTTCCAGATTTCCAAACACTTTAAAAATGAggccaggcatgatggctcacgcctgtaatcctagcacactgggaggctgaggtgggaggattccttgagcaccagaatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761253 129 +  60714840 --gaaaacatagaaaTTAAGGATTTCCAGATTTCCAAACACTTTAAAAACGAggccaggcatgatggctcatgcctgtaatcctagcacattgggaggccgaggtgggaggattccttgagcaccagaatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103296656 131 - 106955855 aagaaaacatagaaaTTAAGGATTTCCAGATTTCCAAACACTTTAAAAATGAggccaggcatgatggctcatgcctgtaatcctagcacgttgggaggccgaggtgggaggattctttgagcaccagagtt
i nomLeu3.chr10             I 302 C 0
s rheMac3.chr19              60587503 129 +  64156825 --aataaaACAGAAATTAAGGATTTCCAGATTTTGAAAAACTTTAAAAACGAggccgggcgtgatggctcatgcctgtaatcctagcacgttgggaggccgaagtgggaggattccttgagtctccgagtt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55726527 129 +  59248254 --aataaaacagaaaTTAAGGATTTCCAGATTTTGAAAAACTTTAAAAACGAggccgggcgtgatggctcatgcctgtaatcctagcacgttgggaggccgaagtgggaggattccttgagtctccgagtt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47828871 128 +  51301725 --aataaaacagaaattaaggATTTCCAGattttgaaaaactttaaaaacgaggccaggcgtgatggctcatgcctgtaatcctagcacgttgggaggccgaagtgggaggatt-cttGAGTCTccgagtt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47542081 129 +  50890351 --aagaaaacaaaaaTTAAGGATTTCCAGATTTCAAAAAACTTTAAAAACGAggccaggcatgatggctcatgcctgtaatcctagcacattgggaggccgaagtgggaggattccttgagtctccgagtt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20011547 236 - 122678785 I
e calJac3.chr22              45893679 278 +  49145316 I

a score=577089.000000
s hg38.chr19_GL949751v2_alt    848628 214 +   1002683 caaaaccagcccgggaaagatgac--aagacctcatctctacagaaaacagttacctggccatggtaatacatgcctgtagagccagctactcaggaggctgaggtgggagaaccgatcaagcctggaagaccgaagccgcagtgagccgtaatca--------ccccactgcactccaggctgggggacagagcaagaccctgtctc--------------aaaaaaagaaagaaag
s panTro4.chr19              59850330 214 +  63644993 caaaaccagcccgggaaagatgac--aagacctcatctctacagaaaacagttacctggccatggtaatacatgcctgtagagccagctactctggaggctgagttgggaggcccgatcaagcctggaagaccgaagccgcagtgagccgtaatca--------ccccactgcactccaccctgggggacagagcaagaccctgtctc--------------aaaaaaagaaagaaag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761382 214 +  60714840 caaaaccagcccgggaaagatgac--aagacctcatctctacagaaaacagttagctggccatggtaatacatgcctgtagacccagctactcaggaggctgaggtgggaggaccaatcaagcctggaagagtgaagccgcagtgagctgtgatca--------ccccactgcgctccagcctgggggacagagcaagaccctgtctc--------------aaagaaagaaaggaag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103296787 214 - 106955855 caaaaccagcccgggaaagatgac--aagaccccatctctacagaaaacagttagctggccatggtaacacatgcctgtagacccagctgctcaggaggctgaggtgggagggccgaacaagcccggaagactgaagccacagtgagccgtgatca--------ccccactgcactccagcttgggggacagagcaagaccctgtctc--------------aaagaaagaaaggaag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60587632 224 +  64156825 caaaaccagcctggaaaagatgac--aagacctcttctctacagaaaaaagttagctggccatggtaatacatgcctgtagtcccagctactcaggaggctgaggtgggaggaccaatcaagcatggaagactgaagccgcagtgagccgtgatca--------caccactgcactccagcctgggggacggagcaagaccctgtctc----aaaaaaaaaaaaaaaaagaaagaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55726656 222 +  59248254 caaaaccagcctggaaaagatgac--aagacctcatctctacagaaaaaagttagctggccatggtaatacatgcctgtagtcccagctactcaggaggctgaggtgggaggaccgatcaagtctggaagactgaagccgcagtgagccgtgatca--------caccactgcactccagcctgggggacggagcaagaccctgtctc------aaaaaaaaaaaaaaagaaagaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47828999 225 +  51301725 caaaaccagcctggaaaagatgac--aagacctcatctctacagaaaaaagttAGCTGGCCATGGtaatacatgcctgtagtcccagctactcaggaggctgaggtgggaggactgatcAAGCCTGGAAGACTGaagccgcagtgagctgtgatca--------caccactgcactccagcctgggggacggagcaagaccctgtctc---aaaaaaaaaaaaaaaaaggaaagaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47542210 207 +  50890351 caaaaccagcctggaaaaga-------------------------------ttagctggccatggtaatacatgcctgtagtcccagctactcaggaggctgaggtgggaggaccgatcaagcctggaagactgaagccacagtgagccgtgatcacaccactgcaccactgcactccagcctgggggacagagcaagatcctgtctcaaaaaaaaaaaaaaaaaaaaagaaagaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45893957 205 +  49145316 caaaaccaacctgggaaagatgatcagagacctcatctctacacaaaaatgttagctggccatggtaatccatacctatagtcccagctactcaggaagctgaggtgggaagacccattaagcctggaaggttgaagctgcagtgagtcgtgatca--------caccacagtgccccagcctggggaacagagcaagaccctatctc-------------------------gaaaa
i calJac3.chr22             I 278 C 0
e canFam3.chr1               20011547 236 - 122678785 I

a score=918616.000000
s hg38.chr19_GL949751v2_alt    848842 277 +   1002683 aagaaaaagaaaaTCGCCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAATGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGATACTCAAGTCCAGGTTTGTGAGGCTGCAGGCTTCTTGGAGCGCCTCTGAGAGATATCTACAGCCAAGCTTGGTTATGCTGCATTGCTGTAACCTACAGGATAATCAAAGGAAGAGAAGCCTGTTATCCCTCTGGCTAACGCCCTGTGAAGCA---GTTATTTCCAACACTATATACCTTCCAC
s panTro4.chr19              59850544 277 +  63644993 aagaaaaagaaaaTCGCCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGACACTCAAGTCCAGGTTTGTGAGGCTGCAGGCTTCTTGGAGCGCCTCTGAGAGATATCTACAGCCAAGCTTGGTTATGCTGCATTGCTGTAACCTACAGGATAATCAAAGGAAGAGAAGCCTGTTATCCCTCTGGCTAACACCCTGTGAAGCA---GTTATTTCCAACACTATATACCTTCCAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761596 277 +  60714840 aagaaaaagaaaaTCACCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGAGACTCAAGTCCAGGTTTGTGAGGCTGCAGGCTTCTTGGAGCGCCTCTGAGATATATCTACAGCCAAGCTTGGTTATGCTGCATTGCTGTAACCTGCAGGATAATCAAAGGAAGAGAAGCCTGTTATCCCTCTGGCTAACGCCCTGTGAAGCA---GTTATTTCCAACACTATATACCTTCCAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103297001 273 - 106955855 ----aaaagaaaaTCGTCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGAGACTCAAGTCCAGGTGTGTGAGGCCGCAGGCTTCTTGGAGTGCCTCTGAGAGATATCTACAGCCAAGCTTGGTTATGCTGCATTGCTGTAACCTGCGGGATAATCAAAGGAAGAGAAGCCTGTTATCCCTCTGGCTAACGCCCTGTGAAGCA---GTTATTTCCAACACTATATACCTTCCAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60587856 276 +  64156825 aaGAAAAAGGAAATTGCCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGAGACTCAAGTCCAGGTTTGTGAGGCTGCAAGCTTCTTGGAGTGCCTCTGAGAGATATCTACAGCCACGCTTGGTTATGCTGCATTGCTGTAACCTGCAGGATAATCAAAGGAAGAGAAGCCTGTTA-CCGTCTGGCTAATGCCCTGTGACGTA---GTTATTTCCAGCACTGTATACCTTCCAC
i rheMac3.chr19             C 0 I 703
s macFas5.chr19              55726878 276 +  59248254 aagaaaAAGGAAATTGCCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGAGACTCAAGTCCAGGTTTGTGAGGCTGCAAGCTTCTTGGAGTGCCTCTGAGAGATATCTACAGCCACGCTTGGTTATGCTGCATTGCTGTAACCTGCAGGATAATCAAAGGAAGAGAAGCCTGTTA-CCGTCTGGCTAATGCCCTGTGACGTA---GTTATTTCCAGCACTGTATACCTTCCAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47829224 277 +  51301725 aagaaaaaggaaatcgcCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGAGACTCAAGTCCAGGTTTGTGAGGCTGCAGGCTTCTTGCAGTGCCTCTGAGAGATATCTACAGCCACGCTTGGTTATGCTGCATTGCTGCAACCTGCAGGATAATCAAAGGAGGAGAAGCCTGTTATCCCTCTGGCTAATGCCCTGTGATGTA---GTTATTTCCAGCACTGTATACCTTCCAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47542417 274 +  50890351 aagaaaaagaaaaTCACCTACCGTAGGTGTTTTAGGTTACAGTTTGGATTCTCTAACGCCTGACAGAGAATCCACAATCCACGAGCTATCTGGTTGAGACTCAAGTCCAGGTTTGTGAGGCTGCACGCTTCTTGGAGTGCCTCTGAGAGATATCTACAGCCACGCTTGGTTATGCTGCATTGCTGTAACCTGCAGGATAATCAAAGGAAGAGAAGCCTGTTATCCGTCTGCCTAATGCCCTGTGAC------GTTATTTCCAGCACTGTATACCTTCCAC
i chlSab2.chr6              C 0 I 3
s calJac3.chr22              45894162 280 +  49145316 agagaaaaaaaaGTCACCTACCGTAAGTGTTTTAGGTTACAGTCTGGATTCTCTAACGCCTTGCAGAGAATCCACAATCCACACCCTATGTGGTTGAGGCTCAAGTCCAAGTCTGTGAGGCTGCAGACTCCTTGGAGAACCTTCGAGATAGGTCTGCAGCCACGCTTGGTTATGTTGCATTGCTGTAACCTGCAGGATCATCACATGAAGAGAGGCCTGTTATCCCTCGGACTTATGCCCTGCGAAGTGGCTGTCACTCCCAGCACCATATATCTTCCGC
i calJac3.chr22             C 0 I 3
s canFam3.chr1               20011783 263 - 122678785 AAAATGAGCAAAAGTACCTACCCTAGACATCTTAGGTTACAATTTGGCTTCTTCAAGGCCTTGCAGAGAAACCATGATCTGGTACCTATAGGATTGAGACCCAGATCCAAGTTTGTTATGCTGGAATCTTCTTTAAGAAGCTTTAAGATGTGTCTGTAGACACATCTGGTTATGTTGCAGTGTGATAATCTGCA-------------AAGACAATCCCGTTC-ATCTCTGGCTTACACCCTGTAAGATG---GTTACTTCCAACAGCACACACCTTCTAC
i canFam3.chr1              I 236 C 0

a score=294.000000
s hg38.chr19_GL949751v2_alt    849119 1 +   1002683 T
s panTro4.chr19              59850821 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761873 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103297274 1 - 106955855 C
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727154 1 +  59248254 C
i macFas5.chr19             C 0 C 0
s canFam3.chr1               20012046 1 - 122678785 T
i canFam3.chr1              C 0 I 23589
e calJac3.chr22              45894442 3 +  49145316 I
e chlSab2.chr6               47542691 3 +  50890351 I
e papAnu2.chr19              47829501 0 +  51301725 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=910.000000
s hg38.chr19_GL949751v2_alt    849120 1 +   1002683 T
s panTro4.chr19              59850822 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761874 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103297275 1 - 106955855 T
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727155 1 +  59248254 T
i macFas5.chr19             C 0 I 1
e canFam3.chr1               20012047 23589 - 122678785 I
e calJac3.chr22              45894442 3 +  49145316 I
e chlSab2.chr6               47542691 3 +  50890351 I
e papAnu2.chr19              47829501 0 +  51301725 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=63774.000000
s hg38.chr19_GL949751v2_alt    849121 118 +   1002683 ATATActggaatgcagtgctgcactcttggctcactgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctcccaagtagctgggattataggtgcccgccaccTATA
s panTro4.chr19              59850823 118 +  63644993 ATATActggaatgcagtgctgcactcttggctcactgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctcccaagtagctgggattataggtgcccgccaccTATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761875 118 +  60714840 ATATActggaatgcagtgctgcaatcttggctcactgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctcccaagtagctgagatgatagttgcctgccaccTATA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103297276 118 - 106955855 ATATAccggaatgcagtgctgcaatcttggctcactgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctcccaagtagctgggattataggtgactgccaccTATA
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e calJac3.chr22              45894442   3 +  49145316 I
e chlSab2.chr6               47542691   3 +  50890351 I
e papAnu2.chr19              47829501   0 +  51301725 C
e macFas5.chr19              55727156   1 +  59248254 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=251041.000000
s hg38.chr19_GL949751v2_alt    849239 218 +   1002683 taaccagacttggtggtgcacgcctgtagtgccagctac-tcagaagactgaggcaggagaatcgcttgaatccgggaggcagaggctgcagtgagctgagatcgcgccactgcactccagcccgggcgacagagcgagactccgtctcaagaaaacaacaa--------caaca-acaaaaaGTATTTATATAAAACATAGGTGGCAGGTAGGAATTGACCCATGAA
s panTro4.chr19              59850941 218 +  63644993 taaccagacttggtggtgcgcgcctgtagtgccagctac-tcagaagactgaggcaggagaatcgcttgaatccgggaggcagaggctgcagtgagctgagatcgtgccatggcactccagcccgggcgacagagcgagactccgtctcaagaaaaaaacaa--------caaca-aaaaaaaGTATTTATATAAAACATAGGTGGCAGGTAGGAATTGACCCATGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56761993 214 +  60714840 taaccaggcttggtggtgcacgcctgtaataccagctac-tcagaaggctgaggcaggagaatcgcttgaatctgggaggcagaggctgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagcaagactccgtctcaagaaaa----aa--------caaca-acaaaaaGTATTTATAAAAAACACAGGTGGCAGGTAGGAATTGACCCATGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103297394 218 - 106955855 taaccaggcttggtggcgcgcacctgtagtaccagctac-tcagaaggctgaggcaggacaatcgcttgaatccaggaggcagaggctgcagtaagctgagatcacgccactgcactccagccggggcgacagagtgagactccgtctcaagaaaaaaacaa--------caaca-aaaaaaaGTATTTATAAAAAACATAGGTGGCAGGCAGCAATTGACCCATGAA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19               3519994 225 -  59248254 taaccaggcttggtggtgcgtgcctgtagtaccagctac-tcagaaggctgaggtaggagaatcgcttgaatcc-ggaggcagaggctgcagtgagctgagatcgcaccaccgcactccaacctgggcaacagagcgagactccgtctcaagaaaaaaataaaaaaaaCTCAACCAAAAAACCTTATTTATA-AAAACATAGGTGGCAGGTTGGAATTGACCCATGAA
i macFas5.chr19             n 1 C 0
s papAnu2.chr19               3470877 224 -  51301725 taaccaggcttggttgTGCgtgtctgtagtaccagctacttcagaaggctgaggtaggagaatcgcttgaatcc-ggaggcagaggctgcagtgagctgagatcgcaccaccgcactccagcctgggcaacagagcgagactccgtctcaagaaaaaaataaaaaaaactcaaCC-AAAAACCTTATTTAT--AAAACCTAGGTAGCAGGTTGGAATTGACCCATGAA
i papAnu2.chr19             n 0 T 54731
e canFam3.chr1               20012047 23589 - 122678785 I
e calJac3.chr22              45894442   3 +  49145316 I
e chlSab2.chr6               47542691   3 +  50890351 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=-1182.000000
s hg38.chr19_GL949751v2_alt    849457 3 +   1002683 -CTG
s panTro4.chr19              59851159 3 +  63644993 -CTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56762207 3 +  60714840 -CTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103297612 3 - 106955855 -CTG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19               3520219 2 -  59248254 -TT-
i macFas5.chr19             C 0 T 51553
s papAnu2.chr19              47829501 3 +  51301725 CTT-
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e calJac3.chr22              45894442 3 +  49145316 I
e chlSab2.chr6               47542691 3 +  50890351 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=372757.000000
s hg38.chr19_GL949751v2_alt    849460 180 +   1002683 GAGCTATATACTTCCAGGTGGGCTTGCACAT-AAAAGCATGCAAATGggccgggcacagtggctcacgcctataatcacagca--gtgggaggccaagacgggcagatcatttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctact------aaaaaatacaaaaatC
s panTro4.chr19              59851162 180 +  63644993 GAGCTATATACTTCCAGGTGGGCTTGTACAT-AAAAGCATGCAAATGgaccgggcacagtggctcatgcctataatcacagca--gtgggaggccaagacgggcagatcatttgaggtcaggagttcaagaccagtctggccaacatggtgaaaccccatctctact------aaaaaatacaaaaatt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56762210 179 +  60714840 GAGCTATACATTTCCAGGTGGGCTTGTACAT-AAAAGCATGCAAATGggcccagcacagtggctcacgcctataatcacagca--gtgggaggccaagatgggcagatcacttgaggtcaggagttcaagaccagcctggcaaacatggtgaaaccccatctctact-------aaaaatacaaaaatC
i ponAbe2.chr19             C 0 I 1170
s nomLeu3.chr10             103297615 180 - 106955855 GAGCTATATACTTCCAGGTGGACCTGTACAT-AAAAGCATGCAAATGggccgggcacagtggctcacgcctataatcacagca--gtgggaggccaagacgggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctact------aaaaaatacaaaaatc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727157 186 +  59248254 GAGCTGTCTACTTGCAGGTGGGCTTGTACATAAAAAGCATGCAAAT-ggcccagtgcagtggctcatgcctataatcccagca--gtgggaggccgagacgggtagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaatcccatttctacttaaaaaaaaaaatacaaaaata
i macFas5.chr19             I 1 I 8
s papAnu2.chr19              47829504 182 +  51301725 GAGCTATCTACTTCCAGGTGGGCTTGTACAT-AAAAGCATGCAaat-ggcccagtgcagtggcttatgcctataatcccagca--gtgggaggccgagacgggtagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaat-ccatctttacttaaaaaaaaaaaaaaaaaaa--
i papAnu2.chr19             C 0 I 3
s chlSab2.chr6               47542694 180 +  50890351 GAGCTATCTACTTCCAGGTGGGCTTGTACAT-AAAAGCATGCAAATGggcccagcacagtggctcatgcctataatcccagca--gtgggaggccga---ggtcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaatcccatttctacttaaaaaaaaaaa---aaaaata
i chlSab2.chr6              I 3 I 8
s calJac3.chr22              45894445 179 +  49145316 GAGCTATATACTTCCAGGCGGGCTTGCACAT-TAAAGCATGCGAATGggccaggcgcggtggctcatgcctgtaatcccagcactgtgggaggcagagaggggcagatcacttga-gtcagtagttcaagaccagcctggccaacatggtgaaacctcgtctctacc-------aaaaatacaaaaat-
i calJac3.chr22             I 3 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=66477.000000
s hg38.chr19_GL949751v2_alt    849640 46 +   1002683 Gggccgggcgcggtggctcaaacctgtaatctcagcactttgggag
s panTro4.chr19              59851342 46 +  63644993 Gggccaggcgcggtggctcaaacctgtaatctcagcactttgggag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103297795 46 - 106955855 gggccgggcgcactggctcaagcctgtaatctcagcacttacgcag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727351 46 +  59248254 ggtccagacacagtggctcaagcctgtaatcccagcactttgggag
i macFas5.chr19             I 8 C 0
s papAnu2.chr19              47829689 46 +  51301725 ggtccagacacagtggctcaagcctgtaatcccagcgctttgggag
i papAnu2.chr19             I 3 C 0
s chlSab2.chr6               47542882 46 +  50890351 ggtccagacacagtggctcaagcctgtaatcccagcactttgggag
i chlSab2.chr6              I 8 I 298
s calJac3.chr22              45894624 46 +  49145316 gagccgggcatggtggcgcgtgcctgtaatcccagctactcaggag
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=15286.000000
s hg38.chr19_GL949751v2_alt    849686 19 +   1002683 accaaggtgggtgaatcac
s panTro4.chr19              59851388 19 +  63644993 accaaggtgggtgaatcac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103297841 19 - 106955855 accaaggtgggtgaatcac
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727397 19 +  59248254 gctgagacaggcagatcac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47829735 19 +  51301725 gctgaggcaggcagatcac
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45894670 19 +  49145316 gctgaagcaggagaattgc
i calJac3.chr22             C 0 I 521
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e chlSab2.chr6               47542928 298 +  50890351 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=46618.000000
s hg38.chr19_GL949751v2_alt    849705 67 +   1002683 --aagatcaggagttcaagaccagcctggccaaagtggtgaaaccccatctttactaaataca-aaaatt
s panTro4.chr19              59851407 67 +  63644993 --gagatcaggagttcaagaccagcctggccaaagtggtgaaaccccatctttactaaataca-aaaatt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103297860 67 - 106955855 --gagatcaggagttcaagaccagcctggccaaagtggtgagaccccatctttactaaataca-aaaatt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727416 70 +  59248254 ctgaggtcgggagttcgagaccagcctgaccgacatggagaaattccgtctccactaaaaatacaaaatt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47829754 70 +  51301725 ctgaggtcgggagttcaagaccagcctgaccgacatggagaaattccgtatctactaaaaatacaaaatt
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e calJac3.chr22              45894689 521 +  49145316 I
e chlSab2.chr6               47542928 298 +  50890351 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=46885.000000
s hg38.chr19_GL949751v2_alt    849772 146 +   1002683 agctgggcacgatggctcacacctgtaatctcagcactttgggaggctgaggcagacagatcacctgaggtcgggagttcaaga-------------------------------ccagcctaagcaatatg-gagaaa-cccgtctctactaaaa------------------------------------------------------------------atac---aaaattagccaggtgtggt
s panTro4.chr19              59851474 146 +  63644993 agctgggcacgatggctcacacctctaatctcagcactttgggaggctgaggcagatggatcacctgaggtcgggagttcaaga-------------------------------ccagcctaagcaatatg-gagaaa-cccatctctactaaaa------------------------------------------------------------------atac---aaaattagccgggtgtggt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103297927 147 - 106955855 agctgggcacaatggctcacacctgtaatctcagcactttgggaggctgaggcagatggatcacctgaggtcgggagttcgaga-------------------------------ccagcctaagcaacatg-gagaaaccccgtctctactaaaa------------------------------------------------------------------atac---aaaattagccgggtgtggt
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47829824 248 +  51301725 agctgggtgtggtggcccatgcctgtaatcccagctactcgggggtctgaggcaagagaattgcttgaacttgggagatgaaggttgcggtaagcagagatcgcgccattgcactccagcctgggcaccaagagtgaaattctgtttcaaaaaaaaaaaaaaaaaaatatatatatatatatatatacacacacacacacacacagagacacacatatacatatacacaaaaattagccgggtgtggt
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e calJac3.chr22              45894689 521 +  49145316 I
e chlSab2.chr6               47542928 298 +  50890351 I
e macFas5.chr19              55727486   0 +  59248254 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=32208.000000
s hg38.chr19_GL949751v2_alt    849918 144 +   1002683 ggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaactggggagacggaggttgtggtgagcagagattgcaccattgcactccagcctgggcaaga---gcgaaactccatctcaaaaaaaaaaaa
s panTro4.chr19              59851620 147 +  63644993 ggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaactggggagacggaggttgcagtgagcagagattgcaccattgcactccagcctgggcaagaagagcgaaactccatctcaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47830072 144 +  51301725 ggtgcacgcctgtaatcctagctactcaggaggctgaggtaggagaattacttgaacccaggaaccagaggttgcagtgagccaagattgcaccactgcattccagcctgggtgaca---gtgagactccatgcaaaaaaaaaaaaa
i papAnu2.chr19             C 0 T 165
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e calJac3.chr22              45894689 521 +  49145316 I
e nomLeu3.chr10             103298074   0 - 106955855 C
e chlSab2.chr6               47542928 298 +  50890351 I
e macFas5.chr19              55727486   0 +  59248254 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=1719.000000
s hg38.chr19_GL949751v2_alt    850062 18 +   1002683 aaattagccaggtgtggc
s panTro4.chr19              59851767 18 +  63644993 aaattagccaggtgtggc
i panTro4.chr19             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e calJac3.chr22              45894689 521 +  49145316 I
e nomLeu3.chr10             103298074  0 - 106955855 C
e chlSab2.chr6               47542928 298 +  50890351 I
e papAnu2.chr19              47830216 165 +  51301725 T
e macFas5.chr19              55727486  0 +  59248254 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=76880.000000
s hg38.chr19_GL949751v2_alt    850080 302 +   1002683 ggcccatgcctgtaatcctagctactcaggaggctgaggtaggag----aattacttgaacccaggaagcggaggttgcagtgagccaagatcgcaccactgcactccagcctggtgacagagagagactg---ttaaaaaaaaaaaaaaaa--CATCCAAATGGCCTTCTGATTCCATCCATTTCCAGCTCTGCCTGGGACaacagcttaggctctgggttcagaccgacccaggacaggatctgagccctgggtcacttattttctgcgtgGTTAGATTATGGAAATTTCACTTTCCCTGTCATTTTAT
s panTro4.chr19              59851785 307 +  63644993 ggcccatgcctgtaatcctagctactcaggaggctgacgtaggag----aattacttgaacccaggaagcggaggttgcagtgagccaagatcgcaccactgcactccagcctggtgacagagagagactcagtttaaaaaaaaaaaaaaaaaTCATCCAAATGGCCTTCTGATTCCATCCATTTCCAGCTCTGCCTGGGACaacagcttaggctctgggttcagaccgacccaggacaggatctgagccctgggtcacttattttctgcgtgGTTAGATTATGGAAATTTCACTTTCCCTGTCATTTTAT
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103298074 308 - 106955855 ggcccatgcctgtaatcctagctactcaggaggctgaggtaggagaattaattacttgaacccaggaagcagaggctgcagtgagccaagatcacaccactgcactccagcctggtgacagagagactcag---ttagaaaaaaaaaaaaaaaTCATCCAAATGGCCTTCTGATTACATCCATTTCCAGCTCTGCCTGGGACAATATCTTAGGCTCTGGGTTTAGACCGACCCAGGACAGGATCTGAGACCTGGATCAGTTATTTTCTGCACGGTTAGATTATGGAAATTTCACTTCCCTTGTCATTTTAT
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e calJac3.chr22              45894689 521 +  49145316 I
e chlSab2.chr6               47542928 298 +  50890351 I
e papAnu2.chr19              47830216 165 +  51301725 T
e macFas5.chr19              55727486   0 +  59248254 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=49139.000000
s hg38.chr19_GL949751v2_alt    850382 128 +   1002683 TTCATGTTTAAGttttgtctttaactgacacattctacatatataggggtatagtgtgatgttttggtgcaggta--------cac------ttcgtataacgatcaGGTAGGTGACTGTT--------------------TGTTTAACAATAGTTATTCTA
s panTro4.chr19              59852092 128 +  63644993 TTCATGTTTAAGttttgtctttaactgacacattctacgtatataggggtatagtgtgatgttttggtgcaggta--------cac------ttcgtataatgatcGGGTAGGTGACTGTT--------------------TGTTTAACAATAGTTATTCTA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103298382 124 - 106955855 TTCACGTTTAGGttttgtctttaattgacacattctacgtatataggggtatagtgtgatgttttggtgcaggta--------cac------atcatataacaatcaGGCAGGTGAC------------------------TGTTTAACAATAGTTATTCTA
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45895210 158 +  49145316 TTCATGTTTAGGttttgtctttaaatgacacattctatatatttcggagcacagtgtgatgtttcggtgcacgtatcatgtatcacctgataattgtataattatcaagtaagTGACTTTTTTTTCTTTTTTTTTGTTTGCTGTTTAACAA----TACTCTA
i calJac3.chr22             I 521 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e chlSab2.chr6               47542928 298 +  50890351 I
e papAnu2.chr19              47830216 165 +  51301725 T
e macFas5.chr19              55727486   0 +  59248254 C
e rheMac3.chr19              60588132 703 +  64156825 I

a score=73418.000000
s hg38.chr19_GL949751v2_alt    850510 127 +   1002683 Agccaggcacagtggctcatgcctggaacgccagcactttgggaggccgaggcaggcagatcacttaaggccaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaacctcatctccactaaaagtg
s panTro4.chr19              59852220 126 +  63644993 Agccaggcacagtggctcatgcctg-aacgccagcactttgggaggccgaggcaggcagatcacctaaggccaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaacctcatctctactaaaagtg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103298506 127 - 106955855 Agccaggcacagtggctcatgcctggaaccccagcactttgggaggccgaggcagacagaacacctgaggccaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaaccccatctctactaaaagta
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727486 159 +  59248254 agctgggtgtggtggcccatgcctgtaatcccagctcctcgggggtctgaggcaggtgaatcacttgaacttgggagacgaaggttgcggtaagcagagattgcgccattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaaaaaaa
i macFas5.chr19             C 0 I 69
s calJac3.chr22              45895368 126 +  49145316 Agcggggcgtggtggctcacgcctgtaatcccagcactttgggtggccgaggcaggtggatcacataaggtcaggagtttgaga-------------------------------ccagcctggccagtatg-gtgaaacttcatctctactaaagta-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e chlSab2.chr6               47542928 298 +  50890351 I
e papAnu2.chr19              47830216 165 +  51301725 T
e rheMac3.chr19              60588132 703 +  64156825 I

a score=211373.000000
s hg38.chr19_GL949751v2_alt    850637 129 +   1002683 caaaaattagccagg-catggtggagggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaagttgcagtcagccaagattacaccactgcattccagtc
s panTro4.chr19              59852346 130 +  63644993 caaaaattagccggggcatggtggagagcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaagttgcagtcagccaagattacaccactgcattccagtc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103298633 129 - 106955855 caaaaattagccagg-catggtggagggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcggtgagccgagattacaccactgcactccagtc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55727714 129 +  59248254 caaaaattagccggg-tgtggtggtgcacgcctgtaatcctagctactcaggaggctgaggtaggagaattacttgaacccaggaaccagaggttgcagtgagccaagatcacaccactgcattccagcc
i macFas5.chr19             I 69 C 0
s papAnu2.chr19              47830051 129 +  51301725 caaaaattagccggg-tgtggtggtgcacgcctgtaatcctagctactcaggaggctgaggtaggagaattacttgaacccaggaaccagaggttgcagtgagccaagattgcaccactgcattccagcc
i papAnu2.chr19             T 165 C 0
s chlSab2.chr6               47543226 129 +  50890351 caaaaattagccggg-tgtggtggtgcacgcctgtaatcctagctactcaggaggctgaggtaggagaattacttgaacccaggaaccagaggttgcagtgagccaagatcacaccactgcattccagcc
i chlSab2.chr6              I 298 C 0
s calJac3.chr22              45895494 129 +  49145316 caaaaattagctggg-cgtggcggcaggcacctagaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagattgcaccactgcattccagcc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I
e rheMac3.chr19              60588132 703 +  64156825 I

a score=43594.000000
s hg38.chr19_GL949751v2_alt    850766 25 +   1002683 tgggcgacagagtgagacttcatcc
s panTro4.chr19              59852476 25 +  63644993 tgggcgacagagtgagacttcatcc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103298762 25 - 106955855 tgggcgacagagtgagacttcatcc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60588835 25 +  64156825 tgggggacagggtgagactccgtcc
i rheMac3.chr19             I 703 C 0
s macFas5.chr19              55727843 25 +  59248254 tgggtgacagagtgagactccatcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47830180 23 +  51301725 tgggtgaca--gtgagactccatgc
i papAnu2.chr19             C 0 I 256
s chlSab2.chr6               47543355 25 +  50890351 tgggtgacagagtgagactccacgc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45895623 24 +  49145316 -tggcagcagagtgagactgtcttt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I

a score=526161.000000
s hg38.chr19_GL949751v2_alt    850791 265 +   1002683 aaaaaaaaaa---aaaTGAATCTCAGAAATGACCACTAGCTAGAATTTCTGAACAGGAACAGGTCTTCAACCCTATGCAATCTCTTGAATATTTTTCTAACCATAATTTTAATGTGAACAGGTAGCTCACGCTGGGCTTCTTTCCATATAACAAGATTCAGCCAACTATAGTTCGTGGGTCAATTCCAACCTGCCACCTATGTCTTTTACAAATAAGGAttttt-gttgagtttttttt---tgtttttttcttgagacggagtctcactct
s panTro4.chr19              59852501 271 +  63644993 aaaaaaaaaagaaaaaTGAATCTCAGAAATGACCACTAGCTAGAATTTCTGAACAGGAGTATGTCTTCAACCCTATGCAATCTCTTGAATATTTTTCTAACCATAATTTTAATGTGAACAGGTAGCTCACGCTGGGCTTCTTTCCATATAACAAGATTCAGCCAACTATAGTTCGTGGGTCAATTCCAACCTGCCACCTATGTCTTTTATAAATAAGGATTTTT-GTTGAGttttttttgtttgtttttttcttgagacggagtctcactct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103298787 263 - 106955855 aaaaaaagaa---aaaagaaTCTCATAAATGAACACTAGCTAGAATTTCTGAACAGGAATAGGTCTTCAACCCTATGCAATCTCTTGAATATTGTTCTAACCATAATTTTAATGTGAACAGGCAACTCATGCTGGGCTTCTTTCCTTATAACAAGATTCAGCCAACCACAGTCCATGGGTCAATTCCAACCTGCCACCTATGTTTTTTATAAATAAGGAttttt-gttgagtttttttt-----tttttttcttgagacagagtctcactct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60588860 263 +  64156825 -aaaaaaaaa---aaaaaaaTCTCAGAAATGAACACTAGCTAGAATTTCCGAACAGGAATAGGTCTTCAACCCTACGTAATCTCTTGAATATTGTTCTAACCACGATCTTAATGTGAACAGGTAACTCAGGCCGGGCTTCTACCCATGTAACAAGATTCAGCCAACAACAATTCATGGGTCAATTCCAACCTGCCACCTATGT-TTTTATAAATAAGGTTTTTTGGTTGAGtttttttt----atttttttcttgagacggagtctcgctct
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55727868 263 +  59248254 -aaaaaaaaa---aaaaaaaTCTCAGAAATGAACACTAGCTAGAATTTCCGAACAGGAATAGGTCTTCGACCCTACGCAATCTCTTGAATATTGTTCTAACCACGATCTTAATGTGAACAGATAACTCAGGCCGGGCTTCTACCCATGTAACAAGATTCAGCCAACAACAATTCATGGGTCAATTCCAACCTGCCACCTATGT-TTTTATAAATAAGGTTTTTTGGTTGAGtttttttt----atttttttcttgagacggagtctcgctct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47830459 259 +  51301725 ---aaaaaaa---aaaaaatactcagaaatgAACACTAGCTAGAATTTCCGAACAGGAATAGGTCTTCGACCCTATGCAATCTCTTGAATATTGTTCTAACCACGATCTTAATGTGAACAGGTAACTCAGGCTGAGCTTCTTCCCATGTAACAAGATTCAGCCAACAACAGTTCATGGGTCAATTCCAACCTGCTACCTA-GG-TTTTATAAATAAGG-TTTTTGGttgagtttttttt----atttttttcttgagacggagtctcgctct
i papAnu2.chr19             I 256 C 0
s chlSab2.chr6               47543380 264 +  50890351 aaaaaaaaaa---aaaaaaaTCTCAGAAATGAACACTAGCTAGAATTTCCAAACAGGAATAGGTCTTCAACCCTATGCAATCTCTTGAATATTGTTCTAACCACGATCTTAATGTGAACAGGTACCTCAGGCTGGGCTTCTTCCCACGTAACAAGATTCAGCCAACTACAGTTCGTGGGTCAATTCCAACCTGCCACCTAGGT-TTTTATAAATAAGGTTTTTTGGTTGCGtttttttt----atttttttcttgagacagagtctcgctct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45895647 225 +  49145316 ---aaaaaga---aaaagaaTCTCAGAAATGAACACTAGCTAGAATTTCTGAACAGGAATAGGTCTTCAACCCTATGCAAACTCTTGAATGTTGTTCTAACCATGATTTCAATGTGAACAGGTAGCACACACTGAGCTGCTTCCCACATAACAAGATTCAGCCAGCAACAATTCATGGGCCAATTCCAGCCTGACACCTGTG-----------------------------------------Gtttctttcttcaggtggaatctcactaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I
e ponAbe2.chr19              56762389 1170 +  60714840 I

a score=2024382.000000
s hg38.chr19_GL949751v2_alt    851056 739 +   1002683 gtcgcccgggctggagtgcagtggcgccatctcagctcactgcagcctctgcctcccagattcaagcgattctcctacctcagccttctg-agtagctggtactat-aggcacgcaccaccaagcctggttaatttttgtattttttagtagcgatgggttttcaccatgttggccaggctggtctcgaacct--------taggtgatctgcccaccATTcaccacctgttccccaataacctatggaaataaaaGTTTA-AAAAAAGGTGCCACTGGCCCTACCACATAACTCAATCTACCTCCAATAGCAGGCAGTACTATGTCATAGGAATTTGAAAGAACACACACAAAGCATCAGATCCGAGAACCAACTACTCATCTCAAATCTTCCTTCATAGCAGGAAGAGGCTCTGCTGACATGCAAATATTAACATGTTTCTACCTGTATCTGCCTGGtttttttt-------gtttctttgtttttttgagaaggagtcttgttctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaacctccgccttccaggttcacgccattctcctgtctcatcctcccaagtagctgggactacaggcatccgccaccacacctggctaatttttggtatttttagtacagacagggtttcaccatgttaaccaggatggtctccatctcctgacctcatgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagc
s panTro4.chr19              59852772 744 +  63644993 gtcgcccaggctggagtgcagtggcgccatctcagctcactgcagcctctgcctcccggattcaagcgattctcctacctcagccttctg-agtagctggtactat-aggcacgcaccaccaagcctggttaatttttgtattttttagtagcgacgggttttcaccatgttggccaggctggtcttgaacct--------taggtgatctgcccaccATTcaccacctgttccccaataacctatggaaataaaaGTTTA-AAAAAAGGTGCCACTGGCCCTACCACATAACTCAATCTACCTCCAATAGCAGGCAGTACTATGTCATAGGAATTTGAAAGAACACACACAAAGCATCAGATCCGAGAACCAACTACTCACCTCAAATCTTCCTTCATAGCAGGAAGAGGCTCTGCTGACATGCAAATATTAACATGTTTCTACCTGCATCTGCCTGGTttttttttttgtttgtttctttgtttttttgagaaggagtcttgttctgtcgcccaggctggagtgcagtggtgca--ctcagctcactgcaacctccgccttccaggttcatgccattctcctgtctcatcctcccaagtagctgggactacaggcatccgccaccacacctggctaatttttggtatttttagtacagacagggtttcaccatgttaaccaggatggtctccatctcctgacctcatgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56763559 735 +  60714840 gtcacccaggctggagtgcgtaggcgccatctcagctctctgcagcctttgcctgccagattcaagcgatt-tcctacctcagccttctg-agtagctggtactat-aggggagcaccaccaagcctggttaatttttgtattttttagtagcgacaggttttcaccatgttggccaggctggtctcgaacct--------taggtgatctgcccaccATTcaccacctgttccccaataacctatggaaatagaaGTTTA-AAAAAAGGTGTCACTGGCCCTACCATATAACTCAATCTACCTCCAATAGCAGGCAGTACTATGTCATAGGAATTTGAAAGAACATACACAAAGCATCAGATCCGAGAACCAACTGCTCATCTCAAATCTTCCTTCATAGCAGGAAGAGGCTCTGCTGACATGCAAATATTAACATGTTTCTACCTGTATCTGCCTGGtttttttt-------gtttgtttatttgtttg---aggagtctcgctctgttgcccaggctggagtgcagcggtgcgatctcggctcactgcaacctccgccttccaggttcacgccattctcctgtctcagcctcccaagtagctgggactacaggcatccgccaccacacctggctaatttttggtatttttagtacagacagggtttcaccatgttaaccaggatggtctccatctcctgacctcatgatccacccgcctcggcctcccaaagtgttgggattacaggcgtgagc
i ponAbe2.chr19             I 1170 C 0
s nomLeu3.chr10             103299050 734 - 106955855 gtcacccaggctggagtgcagtggcgccatctcagctcactgcagcctctgcctcccggattcaagcgattctcctacctcagccttctg-agtagctggtactat-aggcacgcaccaccaagcctggttaatttttgtattttttagtagcaacgggttttcaccatgttggccaggctggtctcgaacct--------taggtgatctgcccaccATTcactacctgttccccaataacctatggaaataaaaTTTT--TCAAAAGGTGTCACTGGCCCTACCATATAACTCAACCTACCTTGAATAGCAGGCGGTACCATGTCATAGGAATTTGAAAGAACACACACAAAGCATCTGATCCAAGAACCAACTGCTTATCTCAAATCTTCCTTCATGGCAGGAAGAAGCTCTGCTGACATGCAAATATTAACATGTTTCTACCTGTATCTGCCTGGtttttttt-------g----tttgtttttttgagaagaagtcttgctctgttgcccaggctggagggcagtggcgcgatctcggctcactgcaacttccgccttccaggttcatgccattctcctgtctcagcctcccaagtagctgggactacaggcatccgccaccacacctggctaatttttggtatttttagtacagacagggtttcaccatgttaaccaggatggtctccatctcctgacctcatgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60589123 730 +  64156825 gttgcccaggttggagtacggtggcgcgatctcagctcactgcagcctctgcct-ccggattcaagcgattctcctacctcagccttctg-agtagctggtactac-aggcacgcaccaccaagcctggttaatttttgtattttttagtagagacgggttttcaccatgttggccgggttggtctcgaaccc--------taggtgatttgcccgccATTcaccacctgttccctaataacctatggaaataaaaaTTTT-ACAAAAGGTGTCACTGGCCCTACCATGTAACTTAATCTACCTCCAATAGCAGGCAGTGCTATGTCATATGAATTTGAAAGAACACACACAAAGCATCAGATCCAAGAACCAATTGCCCATCTCAAATCTTCCTTCGTAGCAGGAAGAGGTTCTGCAGACATGCAAATATTAGCATGCTTCTACCTGTATCTGCCTG----ttttt-------g----ttgttgtttttgagacagagtctcgctctgtcacccaggctggagtgcagtggtgagatcttggcttgctgcaacctccgccttccgggtttatgccattctcctgtctcagcctcccaagtagctgggactacaggcacccaccaccatgcctggctaatttttggtatttttagtggatacggggtttcaccatgttagccaggatggtcttggtctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55728131 730 +  59248254 gttgcccaggttggagtgcggtggtgcgatctcagctcactgcagcctctgcct-ccggattcaagcgattctcctacctcagccttctg-agtagctggtactac-aggcacgcaccaccaagcctggttaatttttgtattttttagtagagacgggttttcaccatgttggccgggttggtctcgaaccc--------taggtgatttgcccgccATTcaccacctgttccccaataacctatggaaataaaaaTTTT-ACAAAAGGTGTCACTGGCCCTACCATGTAACTTAATCTACCTCCAATAGCAGGCAGTGCTATGTCATATGAATTTGAAAGAACACACACAAAGCATCAGATCCAAGAACCAATTGCCCATCTCAAATCTTCCTTCGTAGCAGGAAGAGGTTCTGCAGACATGCAAATATTAGCATGCTTCTACCTGTATCTGCCTG----ttttt-------g----ttgttgtttttgagacagaatctcgctctgtcacccaggctggagtgcagtggtgagatcttggcttgctgcaacctccgccttccgggtttatgccattctcctgtctcagcctcccaagtagctgggactacaggcacccactaccatgcctggctaatttttggtatttttagtggatacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47830718 731 +  51301725 gttgcccaggctggagtgcggtggtgcgatctcagctcactgcagcctctgcct-ccggattcaagcgattctcctacctcagccttctgaagtagctggtactac-agacacGCAcaaccaagcctggttaatttttttattttttagtagagatgggttttcaccatgttggccgggttggtctcgaaccc--------taggtgatttgcccgccattcaccacctgttccccaataacctatggaaataaaaatttt-acaaaaggtGTCACTGGCCCTACCATATAACTCAATCTACCTCCAATAGCAGGCAGTGCTATGTCATATGAatttgaaagaacacacacaaagcatCAGATCCAAGAACCAATTGCCCATCTCAAATCTTCCTTCGTAACAGGAAGAGGTTCTGCAGACATGCAAATATTAGCATGCTTCTACCTGTATctgcctg----ttttt-------g----ttgttgtttttgagacggagtctcgctctgtcacccaagctggagtgcagtggtgagatcttggctcgctgcaacctccgccttccgggtttatgccattctcctgtctcagcctcccaagtagctgggactacaggcacccaccaccatgcccggctaatttttggtaattttagtggatacggggtttcaccatgttagccaggatggtcttgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47543644 730 +  50890351 attgcccaggttggagtgcggtggcgcgatctcagctcactgcagcctctgcct-ccggattcaagcgattctcctacctcagccttctg-agtagctggtactac-aggcacgcaccaccaagcctggttaatttttgtattttttagtagagacgggttttcaccatgttggctgggttggtctcgaaccc--------taggtgatttaccagccATTcaccacctgtttcccaataacctatggaaataaaaaTTTT-ACAAAAGGTGTCACTAGCCCCACCCTATAACTCAATCTACCTCCAATAGCAGGCAGTGCTATGTCATATGAATTTGAAAGAACACACACAAAGCATCAGATCCAAGAACCAATTGCCCATTTCAAATCTTCCTTCATAACAGGAAGAGGTTCTGCAGACATGCAAATATTAGCATGCTTCTACCTGTATCTGCCTG----ttttt-------g----ttgttgtttttgagacggagtctcgctctgtcacccaggctggagtgcagtggtgagatcttggctcactgcaccctccgccttctgggttcacgccattctcctgcctcagcctctcaagtagctgggactacaggtacccaccaccatgcccaggtaatttttggtatttttagtggatacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45895872 684 +  49145316 atcg-ccaggctggagtgcagtggcacgatctcagctccctgcaacctctgcctcccagatctaagtgattctcctgcctcagcctcccg-agtagctggtactacaaggcttgccccaccacgccaggctaatttttata-tttttagtagagagggggtttcac---attggccaggctggtctcgaaccccttgaccttaggtgatctgcccaccATTCACCACCCGTTCTCCAATAATGTGTGGAAATAAAAATTTTAAAAAAAGATGTCACTGGCCCTACCACATAACTCAATCTACCTCTGATAGCAGAGAGTAC--TGTCATGTGAATTTGAAAGAACATCCACAAAGCATCAGATCCAAGAATGAATTGGCCATCTCAAATCTTCCTTCACAGCAGCAAGAGG---------CATGAAAATATTAACAGATTTTTACCTGTCTCTGCCCG--tttcttt-------t----tttttttttttgagatggagtctcactctgtgacccaggctggagagcaatgatgtgatgtcggctcaccacaacctctgcccct-------------------------------------------gattacaggcacacaccaccacgcctggctgattttttgtctttttagtagagacaaggtttcaccttgttagccaggatggtctccatctcctgaccttgtgatctgcccaccttggcctcccaaagtgttgggattacaggggtgagc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20012047 23589 - 122678785 I

a score=278913.000000
s hg38.chr19_GL949751v2_alt    851795 123 +   1002683 caccacgcctggccTCTGCCTGTTCT------------TTAATTCTTACCAGGTTTTTAAAAGTTACATTTG--------AAATGAATTAACAAGTACTTTCATGTCTCTCCTGCTTGAATTCA-TGTG----------------------------------------------------------------------------CACACACACACACAC--
s panTro4.chr19              59853516 123 +  63644993 caccacgcctggccTCTGCCTGTTCT------------TTAATTCTTACCAGGTTTTTAAAAGTTACATTTG--------AAATGAATTAACAAGTACTTTCATGTCTCTCCTGCTTGAATTCA-TGTG----------------------------------------------------------------------------CACACACACACACAC--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56764294 122 +  60714840 caccgcgcctggccTCTGCCTGTTCT------------TTAATTCCTACCAGGTTTTTAAAAGTTACATTTG--------AAATGAATTAACAAGT-CTTTCATCTCTCTCCTGCTTGAATTCA-CGTG----------------------------------------------------------------------------CACACACACACACAC--
i ponAbe2.chr19             C 0 I 435
s nomLeu3.chr10             103299784 123 - 106955855 cactgtgcctggccTCTGCCTGTTCT------------TTAATTCTTACCAGGTTTTTAAAAGTTACATTTG--------AAATGAATTAACAAGTACTTTCATCTCTCTCCTGCTTGAATTCA-CGTG----------------------------------------------------------------------------cacacacatacacac--
i nomLeu3.chr10             C 0 I 14
s rheMac3.chr19              60589853 165 +  64156825 caccgtgcctggccTCTGCCTATTCT------------TTAATTCTTATCAAGTTCTTAAAAGTTACATTTG--------AAATGAATTAACCAGTACTTTCTTATCTCTCCTGCTGGAATTCA-CTCGCATGcacacgtgcgcacacacacgcacgcgcacata----------------------------------catacacacacacacacacac--
i rheMac3.chr19             C 0 I 18
s macFas5.chr19              55728861 197 +  59248254 caccgtgcctggccTCTGCCTATTCT------------TTAATTCTTATCAAGTTCTTAAAAGTTACATTTG--------AAATGAATTAACCAGTACTTTCTTCTCTCTCCTGCTGGAATTCA-CTCGCATGCACACGTGCGCACACACACGCATGCGcacatacacatacacacac--acacacacacacacacacgcacgcgcacacacacacacac--
i macFas5.chr19             C 0 I 18
s papAnu2.chr19              47831449 176 +  51301725 caccgtgcctggcctctgcctATTCT------------TTAATTCTTGTCAAGTTCGT-AAAGTTACATTTG--------AAATGAATTAACCAgtactttcttctctcttctgcttgaaTTCA-CTtgcatgcacacgtgcgcacgcacatgc----------------------acatacacacatacacatacacatacacacacacacacacacac--
i papAnu2.chr19             C 0 I 18
s chlSab2.chr6               47544374 137 +  50890351 caccgtgcccggccTCTGCCTATTCT------------TCAATTCTTATCAAGTTCTTAAAAGTTACATTTG--------AAATGAATTAACCAGTACTTTCTTCTCTCTCCTCCTTGAATTCA-CTTGCATGCACACGTGCG--------------------------------------------------------------CGcacacgcacacac--
i chlSab2.chr6              C 0 I 18
s calJac3.chr22              45896556 120 +  49145316 caccacacccagcc----------------------------TTCTTACCAAGTTCTTACCAGTTACATTTT--------AAATGAATTA---AGGACTTCCATATCTCTCCTGCTTGAATTca-cata----cacacgcgcacacgca--------------------------------------------------------cgcacacacgcacac--
i calJac3.chr22             C 0 I 2
s canFam3.chr1              102623198 144 + 122678785 CACTATGTCTTGCTTTTTTTTTTTTTAACATCCTCTTGCCAGGTCTCATCAGATCTGTCAGTATCATACTTGGGGTATTCAGAGAAGCTATTAAATGCTTGCA--TCTGTGCTACTTGAATCCAGTATG----------------------------------------------------------------------------CACATGCACACAAATAA
i canFam3.chr1              n 23589 C 0

a score=1041552.000000
s hg38.chr19_GL949751v2_alt    851918 291 +   1002683 CCAGCAGGGACTTACACCAAGGTCTGCAGTTTACAATCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCAATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTTCTTGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAACTGGCTTCTGTAAGACGACAGTTTTCCAACCTGCAAAAATATGAAACAAATGGTAGAAGGATGAGAACATTTCCACAACTCCAACCTGCTCAGTGATGTCCACATGCTAGGGTACTCAGCTTCAGCCCTTCCTGT
s panTro4.chr19              59853639 291 +  63644993 CCAGCAGGGACTTACACCAAGGTCTGCAGTTTACAATCAGGGTAACTCAAGCCTTCACACAGAAACTTCACCCCTGTATCCCCAATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTTCTTGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAACTGGCTTCTGTAAGACGACAGTTTTCCAACCTGCAAAAATATGAAACAAATGGTAGAAGGATGAGAACATTTCCACAACTCCAACCTGCTCGGTGATGTCCACATGCTAGGGTACTCAGCTTCAGCCCTTCCTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56764851 291 +  60714840 CCAGCAGGGACTTACACCAAGGTCTGCAGTTTACACTCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCAATGAGGTTCTTGGCCAAGCACAGGTGTGTCAGCTTCTTGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAACTGGCTTCTGTAAGACGACAGTTTTCCAACCTGCAAAAATATGAAACAAAAGGTAAAAGGATGAGAACATTTCCACAACTCCAACCTGCTTGGCGATGTCCACATGCTAGGGTCCTCAGCTTCAGCCCTTCCTGT
i ponAbe2.chr19             I 435 C 0
s nomLeu3.chr10             103299921 291 - 106955855 ccaacaGGGACTTACACCAAAGTCTGCAGTTTACAGTCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCAATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTTCTGGCTGACAACCAAGACAGCAGCAAGGTCCTTACAACTGGCTTCTGTAAGACGACAGTTTTCCAACCTGCAAAAATATGAAACAAATGGTAAAAGTATGAGAACATTTCCACAACTCCAACCTGCTTGGCGATGTCCACGTGCTAGGGTCCTCAGCTTCAACCCTTCCTGT
i nomLeu3.chr10             I 14 C 0
s rheMac3.chr19              60590036 291 +  64156825 CCAGCAGAGACTTACACCAAGGCCTGCAGTTTACACTCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCGATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTGCTGGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAGCTGGCTTCTGTAAGACGACAGTTTTCTAACCTGCAAAAGTATGAAACAAATGGTAAAAGGATGAGAACATTTCCACAACTCCAACCTGCTTGGCGATATCCACATGCTAGGGTCCTCAGCTTCAGCCCTCCCTGT
i rheMac3.chr19             I 18 C 0
s macFas5.chr19              55729076 291 +  59248254 CCAGCAGAGACTTACACCAAGGCCTGCAGTTTACACTCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCGATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTGCTGGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAGCTGGCTTCTGTAAGACGACAGTTTTCTAACCTGCAAAAGTATGAAACAAATGGTAAAAGGATGAGAACATTTCCACAACTCCAACCTGCTTGGCGATATCCACATGCTAGGGTCCTCAGCTTCAGCCCTCCCTGT
i macFas5.chr19             I 18 I 303
s papAnu2.chr19              47831643 291 +  51301725 ccagcaGAGACTTACACCAAGGCCTGCAGTTTACACTCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCAATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTGCTGGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAACTGGCTTCTGTAAGACGACAGTTTTCCAACCTGCAAAAGTATGAAACAAATGGTAAAAGGATGAGAACATTTCCACAACTCCAACCTGCTTGGCGATGTCCACATGCTAGGGTCCTCAGCTTCAGCCCTCCCTGT
i papAnu2.chr19             I 18 C 0
s chlSab2.chr6               47544529 291 +  50890351 CCAGCAGAGACTTACACCAAGGCCTGCAGTTTACACTCAGGGTAACTCAAGCCCTCACACAGAAACTTCACCCCTGTATCCCCGATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGCTGCTGGCTGACAACCAAGACAGCAGCAAGGTCCTTGCAACTGGCTTCTGTAAGACGACAGTTTTCTAACCTGCGAAAGTATGAAACAAATGGTAAAAGGATGAGAACATTTCCACAACTCCAACCTGCTTGGCGATGTCTACATGCCAGGGTCCTCAGCTTCAGCCCTCCCTGT
i chlSab2.chr6              I 18 C 0
s calJac3.chr22              45896678 290 +  49145316 CCAGCAGGGACTTACACCAGGGTCTGCAGTTTACAGTCGGGGTAACTCAAGCCCTCACACAGCAACTCCACCCCTCTATCCCCGATGGGGTTCTTGGCCAAGCACAGGTGTGTCAGATGCTGGTTGACAATCAAGACATTAGCAAGCTCCTTGCAACTGGCTTCTGTAAGACGACAGTTTTCCAACCTGCAAAAACATGAAACACATGGTCACATGATAAGAACGCTTCCCAAACTCCAACCTGCTC-GCCATGTCCACGTGCCGGGGTCCTCAGCATCTGCCCTGCCCGT
i calJac3.chr22             I 2 C 0
s canFam3.chr1              102623342 290 + 122678785 CTAGCATGGACTTACACCAGCATCTGTAGTTGACAGTCAGGGTAACTCAAGCCTTCACACAGAAGCTTTACCCCATCATCTCCCAGAGTGTTCTTTGCCAAACTCAGGTGCGTCAGCCTCTGGTTGACAATCAAAGCTGAAGAGAGCTCTTTGCAACAGGCTTCTGTAAGTTGACAGTTTTCCAACCTGCCAAAGCACCACACAAATGGTAAGAGGGTGAGAACATTTCCAAAAC-CCAATTTTCTTGGCTGTCCCTAAAGGCCAGAGGCCCCATCTATGGCTCATCTTGT
i canFam3.chr1              C 0 I 16

a score=206281.000000
s hg38.chr19_GL949751v2_alt    852209 71 +   1002683 TCATCCCCTGC--CCTCTGTCCTGTGGGAGTCATCATG-------------GCCACAAAAGAGCAGGAAGGCGAGAAGGCCAAGAT
s panTro4.chr19              59853930 71 +  63644993 TCATCCCCTGC--CCTCTGTCCTGTGGGAGTCATCATG-------------GCCACAAAAGAGCAGGAAGGCGAGAAGGCCAAGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765142 71 +  60714840 TCATCCCCTGC--TCTCTGTCCTGTGTGAGTCATCACG-------------GCCACAAAAGAGCAGGAAGGCGAGAAGGCCAAGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103300212 71 - 106955855 TCATCCCCTGC--CCTCTGTCCTGTGCGAGTCATCACG-------------GCCACAAAAGAGCAGGAAGGCGAGAAGGCCAAGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60590327 71 +  64156825 TCATCCCCTGC--CCCCTGTCCTGTGCAAGTCATCACG-------------GCCACGAAAGACCAGAAATGCGAGAAGGCCAAGAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55729670 71 +  59248254 TCATCCCCTGC--CTTCTGTCCTGTGCAAGTCATCACG-------------GCCACGAAAGACCAGAAATGCGAGAAGGCCAAGAT
i macFas5.chr19             I 303 C 0
s papAnu2.chr19              47831934 71 +  51301725 TCATCCCCTGC--CCCCTGTCCTGTGCAAGTCATCACG-------------GCCACGAAAGACCAGAAATGCGAGAAGGCCAAGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47544820 71 +  50890351 TCATCCCCTGT--CCTCTGTCCTGTGCAAGTCATCATG-------------GCCACAAAAGACCAGAAATGCGAGAAGGCCAAGAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45896968 70 +  49145316 TAATCCCCTGC--CCTCTGTCCTGAGCG-GTCGTCACA-------------GCCGCAAAAGACCGGGAATGCGAGAAGGCCAAGAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102623648 83 + 122678785 tcatctatagcatctatagctctatagcTCTCATCATGTGCTTAACACTCAATCATGAAGGA---AGGATGAGGGAATGATAAGAT
i canFam3.chr1              I 16 C 0

a score=94809.000000
s hg38.chr19_GL949751v2_alt    852280 41 +   1002683 GCAGCGGTCCACCTGGAGCCATCACAGGACACAGGTG-----------------------------ttgt
s panTro4.chr19              59854001 41 +  63644993 GCAGCGGTCCACCTGGAGCCATCACAGGACACAGGTG-----------------------------ttgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765213 50 +  60714840 GCAGCGGTCCACCTGCAGCCATCACAGGACACCGGTGttctttcg--------------------tttgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103300283 70 - 106955855 GCAGCAGTCCACCTGGAGCCATCACAGGACACAGGTGTTCTTTCGtttgttttttttttttttttttttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60590398 41 +  64156825 GTTGCGGTCCACCTGGAGCCGTCACAGGACACAGGTG-----------------------------ttgt
i rheMac3.chr19             C 0 I 180
s macFas5.chr19              55729741 41 +  59248254 GTAGCGGTCCACCTGGAGCCATCACAGGACACAGGTG-----------------------------ttgt
i macFas5.chr19             C 0 I 181
s papAnu2.chr19              47832005 41 +  51301725 GTAGCGGTCCACCTGGAGCCCTCACAGGACACAggtg-----------------------------ttct
i papAnu2.chr19             C 0 I 693
s chlSab2.chr6               47544891 41 +  50890351 GTAGCGGTCCACCTGGAGCCGTCACAGGACACAGGTG-----------------------------ttct
i chlSab2.chr6              C 0 I 9
s calJac3.chr22              45897038 39 +  49145316 GCAGCGGGCCACCTGTAACCATCTCAGGAAGCAGCTG-----------------------------TT--
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102623731  0 + 122678785 C

a score=27454.000000
s hg38.chr19_GL949751v2_alt    852321 11 +   1002683 ttttgagacgg
s panTro4.chr19              59854042 11 +  63644993 ttttgagacgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765263 11 +  60714840 ttttgagacag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103300353 11 - 106955855 ttttgagacgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60590619 11 +  64156825 ttttgagacgg
i rheMac3.chr19             I 180 C 0
s macFas5.chr19              55729963 11 +  59248254 ttttgagacgg
i macFas5.chr19             I 181 C 0
s papAnu2.chr19              47832739 11 +  51301725 ttttgagacgg
i papAnu2.chr19             I 693 C 0
s chlSab2.chr6               47544941 11 +  50890351 ttttgagatgg
i chlSab2.chr6              I 9 I 175
e canFam3.chr1              102623731  0 + 122678785 C
e calJac3.chr22              45897077  0 +  49145316 C

a score=273560.000000
s hg38.chr19_GL949751v2_alt    852332 106 +   1002683 agtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggttcactgccaatcgccgcctcccaggtttacaccattctgctgactcagcctcctgagta
s panTro4.chr19              59854053 106 +  63644993 agtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggttcactgccaatctccgcctcccaggtttacaccattctcctgactcagcctcctgagta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765274 106 +  60714840 agtctcgctctgtcgcccaggctggagtgcagtggcacgatctcagctcactgccaatctccgcctcccgggttcacgccattctcctgactcagcctcctgagta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103300364 105 - 106955855 agtctcgctctgtcgcccaggctggagtgcagtggtgcaatctcggctcactg-caagctccgccgcccaggttcacgccattctcctgcctcagcctcctgagta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60590630 106 +  64156825 agtctcgctctgtcgcccaggctggagtacattggcgctatctcggctcactgcaaagctctgcctcctgggttcacaccattctcctgccttagtctcccgagta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55729974 106 +  59248254 agtctcgctctgtcgcccaggctggagtacattggcgctatctcggctcactgccaagctctgcctcctgggttcacaccattctcctgccttagtctcccgagta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47832750 106 +  51301725 agtctcactctgtcgcccaggctggagtacattggcgctatctcggctcactgccaagctctgcctcctgggttcacaccattctcctgccttagtctcccgagta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47545127 106 +  50890351 agtctcgctctgtcgcccaggctggaatgcattggcgctatctcggctcactgccaagctccgcctcctgggttcacgccattctcctgccttagtctcccgagta
i chlSab2.chr6              I 175 C 0
s calJac3.chr22              45897077  80 +  49145316 -------------------------Tgtgcagtggcgccatctcggctcacag-caacctccacctcccgggctcaagcgattctcctgcctcagcctcctgagta
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102623731   0 + 122678785 C

a score=288747.000000
s hg38.chr19_GL949751v2_alt    852438 132 +   1002683 gctgggactacaggcgc-----------------------ccaccacacctggataattttttgtattttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcttgacctcgtgatctccccgccttggcctcccaacgt
s panTro4.chr19              59854159 155 +  63644993 gctgggactacaggcccacctactgggtataaaaaattatccaccacacctggataattttttgtattttttagtagagacggagttttaccatgttagccaggatggtctcgatctcttgacctcgtgatctccccgccttggcctcccaacgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765380 132 +  60714840 gctgggactacaggcac-----------------------ccaccacgcctggataattttttgtattttttagtagagatggggtttcaccgtgttagccaggatggtctcaatctcttgacctcgtgatccacccgccttggcctccaaacgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103300469 132 - 106955855 gctgggactacaggcgc-----------------------ccaccacgcctggataatttttcgtattttttagtagagacggggtttcaccatgttagccaggatggtctcaatctcttgacctcgtgatctgcccgccttggcctcccaacgt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60590736 135 +  64156825 gctgggactacgggcgcccg--------------------ccaccgcacccggctaattttttgtattttttagtagaggtggggtttcaccatgttagccaggatggtctcgatctcttggcctcgtgatccgcccgccttggtctcccaaagt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55730080 135 +  59248254 gctgggactacaggcgcccg--------------------ccaccgcacccggctaattttttgtattttttagtagagatggggtttcaccatgttagccaggatggtctccatctcttgacctcgtgatccgcccgccttggtctcccaaagt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47832856 135 +  51301725 gctgggactacaggcgcccg--------------------ccaccgcacccggctaattttttgtattttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcttgacctcgtgatccgcccgccttcgtctcccaaagt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47545233 124 +  50890351 gctgggactacaggcgccca--------------------ccaccgcacccggctaattttctgtattttttagtagagacggggtttcactgtgttagccagcatggtctcgatctcttgaccttgtgatccgcccgccttc-----------t
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102623731   0 + 122678785 C
e calJac3.chr22              45897157   0 +  49145316 C

a score=386734.000000
s hg38.chr19_GL949751v2_alt    852570 139 +   1002683 gctgggatt--acaggcatgagccaccgcacccggccTG--Tttttggtatttttaatagaaacagggtttcaccatgttggccaggttggtctcgaactcctgaactcagatgatccgcccacct----ctc------tgctgagattacag
s panTro4.chr19              59854314 139 +  63644993 gctgggatt--acaggcatgagccaccgcacccggccTG--Tttttggtatttttaatagaaacagggtttcaccatgttggccaggttggtctcgaactcctgaactcagatgatccgcccacct----ctc------tgctgagattatag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765512 139 +  60714840 gctgggatt--acaggcatgagccaccgcgcccggccTG--Tttttggtatttttaatagagacacggtttcaccacgttggccaggttggtctcaaactcctgaactcagatgatccgcccacct----ctc------tgctgagattacag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103300601 139 - 106955855 gctgggatt--acaggcgtgagccaccgcgcccagccTG--Tttttggtatttttaatagagacagggtttcaccatgttggccaggttggtctcgaactcctgaactcagatgatctgcccacct----ctc------tgctgagattacag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60590871 151 +  64156825 gctgggctt--acagacgtgagccaccacacccaccctgttttttttgtatttttaatagagacggggtttcgccatgttggccagggtggtctcgaactcctgaactcagatgatccgcccacctcagcctcccaaagtggtgagattacag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55730215 151 +  59248254 gctgggatt--acaggcgtgagccaccacacccaccctgttttttttgtatttttaatagagacggggtttcgccatgttggccaggttggtctcgaactcctgaactcagatgatccgcccacctcagcctcccaaagtgctgagattacag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47832991 151 +  51301725 gctgggatt--acaggcgtgagccaccacacccaccctgttttttttgtatttttaatagagacagggtttcgccatgttggccaggttggtctcgaactcctgaactcagatgatccgcccacctcagcctcccaaagtgctgagattacag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47545357 150 +  50890351 gctgggatt--acaggcgtgagccaccgcacccaccctg-tttttttatatttttaatagagacagggtttcaccatgttggccaggttggtctcgaactcctgaactcagatgatccgcccacctcagcctcccaaagtgctgagattacag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45897157 150 +  49145316 gctgggatgcaccagacatgcacagccacagctg-tcag--tttttggtattcttagtggagacagggttttgccatgttggccaggttggtctcgaactcctgacctcagatgatctaccctcttcggcctcccaaagtgctgagattacag
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102623731   0 + 122678785 C

a score=1190693.000000
s hg38.chr19_GL949751v2_alt    852709 372 +   1002683 gcaggagccaccgtgccggg--ccTGAAG-------CAGGTGTTTATTTCAGCAAGAGGCGCCACGTGGGTGGCGCAGTAAGT-CAGGTGTTACC-----CTTTCTCTTCTATAGCCCCAGAACTA-AACCAGAGCTGCCCATGGGAAGAGGAG----ACTTACGACAACATCTGCAGGAAGTGTTTTGGGCGTGTCATGGTCTTGTACAGCAACATGGCACCCTCATCCAGGAGCACATTGGCTGAGAGACGCAGGTGCTTCAGGGACTGGTTGGCTTTGAGGACATAGAAGAATTCAGCCCACTGCTCCGGGGTGGCACAGTGACCTCCCAACCTGTGAAAAGAGTGGGAA-AAGTCATTCTTCTGGGAGGACAGAGTATACCCTATCAGC
s panTro4.chr19              59854453 372 +  63644993 gcaggagccaccgtgccggg--ccTGAAG-------CAGGTGTTTATTTCAGCAAGAGGCACCACGTGGGTGGTGCAGTAAGT-CAGGTGTTACC-----CTTTCTCTTCTATAGCCCCAGAACTA-AACCAGAGCTGCCCATGGGAAGAGGAG----ACTTACGACAACATCTGCAGGAAGTGTTTTGGGCGTGTCATGGTCTTGTACAGCAACATGGCACCCTCATCCAGGAGCACATTGGCTGAGAGACGCAGGTGCTTCAGGGACTGGTTGGCTTTGAGGACATAGAAGAATTCAGCCCACTGCTCCGGGGTGGCACAGTGACCTCCCAACCTGTGAAAAGAGTGGGAA-AAGTCATTCTTCTGGGAGGACAGAGTATACCCTATCAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56765651 372 +  60714840 acaggagccaccgcgcccgg--ccTGAAG-------CAGGTGTTTATTTCAGCGAGAGGCGCCACGTGGGTGGCGCAGTAAGT-CAGGTGTTACC-----CTTTCTCTTCTATGGCCCCAGAACTA-AACCAGAGCTGCCCGTGGGAAGAGGAG----ACTTACGACAACATCTGCAGGAAGTGTTCTGGGTGTGTCATGGTCTTGTACAGCAACTTGGCACCCTCGTCCAGGAGCACATTGGCTGAGATGTGCAGGTGCTTCAGGGACTGGTTGGCTTTGAGGACATAGAAGAATTCAGCCCACTGCTCCGGGGTGGCACAGTGACCTCCCAACCTGTGAAAAGAGTGGGAA-AAGTCATTCTTCTGGGAGGACAGAGTATACCCTATCAGC
i ponAbe2.chr19             C 0 I 20
s nomLeu3.chr10             103300740 372 - 106955855 gcaggagccaccgcgcccag--ccTGAAG-------CAGATGTTTATTTCAGCGAGAGGCGCCACGAGGGTGACGCAGTAAGT-CAGGTGTTACC-----CTTTCTCTTCTATGGCCCCAGAACTA-AACCAGAACTGCCCGTGGGAAGAGGAA----ACTTACGACAACATCTGCAGGAAGTGTTCTGGGTGTGTCATGGTCTTGTACAGCAACTGGGCACCCTCGTCCAGGAGCACATTGGCTGAGAGATGCAGGTGCTTCAGGGACTCATTGGCTTTGAGGACATAGAAGAATTCAGCCCACTGCTCTGGGGTGGCACAGTGACCTCCCAACCTGTGAAAAGAGTGGGAA-AAGTCATTCTTCTGGGAGGACAGAGTACACCCTATCAGC
i nomLeu3.chr10             C 0 I 12
s rheMac3.chr19              60591022 371 +  64156825 gca-gagccaccatgcccag--ccTGAAG-------CAGGTGTTTATGTCAGCGAGAGGTGCCACGTGGGTGGCCCAGCAAGT-CAGGTGTTACC-----CTGTCTCTTCTATGGCCCCAGAGCTA-AACCGGAGCTGGCCGTGGGAAGAGGAT----ACTTACGACAACATCTGTAGGAAGTGTTTTGGGTGTGTCATGGTCTTGTACAGCAACTTGGCACCCTCGTCCAGGAGCACACTGGCTGAGAGGTGCAGGTGCCTCAGGGACTGGTTGGCTTTGAGGACATAGAAGAAATCAACCCACTGCTCCGAGGTGGCACAGTGACCTCCCAACCTGTGAAAAGCGTGGGAA-AAGTCATTCTTCTGGGAGGACAGAGTATAACCTATCAtt
i rheMac3.chr19             C 0 I 2
s macFas5.chr19              55730366 371 +  59248254 gca-gagccaccatgcccag--ccTGAAG-------CAGGTGTTTATGTCAGCGAGAGGTGCCACGTGGGTGGCCCAGCAAGT-CAGGTGTTACC-----CTTTCTCTTCTATGGCCCCAGAGCTA-AACCGGAGCTGCCCGTGGGAAGAGGAG----ACTTACGACAACATCTGTAGGAAGTGTTTTGGGTGTGTCATGGTCTTGTACAGCAACTTGGCACCCTCGTCCAGGAGCACACTGGCTGAGAGGTGCAGGTGCCTCAGGGACTGGTTGGCTTTGAGGACATAGAAGAAATCAACCCACTGCTCCGAGGTGGCACAGTGACCTCCCAACCTGTGAAAAGGGTGGGAA-AAGTCATTCTTCTGGGAGGACAGAGTATAACCTATCAGC
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47833142 371 +  51301725 gca-gagccaccatgcccag--cctgaag-------caGGTGTTTATGTCAGCGAGAGGTGCCACGTGGGTGACCCAGCAAGT-CAGGTGTTACC-----CTTTCTCTTCTATGGCCCCAGAGCTA-AACTGGAGCTGCCCGTGGGAAGAGGAG----ACTTACGACAACATCTGTAGGAAGTGTTTTGGGTGTGTCATGGTCTTGTACAGCAACTTGGCACCCTCGTCCAGGAGCACACTGGCTGAGAGGTGCAGGTGCCTCAGGGACTGGTTGGCTTTGAGGACATAGAAGAAATCAACCCACTGCTCCGAGGTGGCACAGTGACCTCCCAACCTGTGAAAAGCGTGGGAA-AAGTCATTCTTCTAGGAGGACAGAGTATAACctatcagc
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               47545507 371 +  50890351 gca-gagccaccatgcccag--ccTGAAG-------CAGGTGTTTATGTCAGCGAGAGGTGCCATGTGGGTGGCCCAGCAAGT-CAGGTGTTACC-----CTTTCTCTTCTATGGCCCCAGAGCTA-AACCGGAACTGCCCGTGGGAAGAGGAG----ACTTACGACAACATCTGTAGGAAGTGTTTTGGGTGTGTCATGGTCTTGTACAGCAACTTGGCACCCTCGTCCAGGAGCACACTGGCTGAGAGGTGCAGGTGCCTCAGGGACTGGTTGGCTTTGAGGACATAAGAGAAATCAGCCCACTGCTCCGAGGTGGCACAGTGACCTCCCAACCTGTGAAAAGCATAGGAA-AAGTCATTCTTCTGGGAGGACAGAGTATAACCTATCAgt
i chlSab2.chr6              C 0 I 320
s calJac3.chr22              45897307 370 +  49145316 gcatgagtcaccatgcccag--ccTGAAG-------CGGGTGTTTCTATCAGGGAGAGGTACCACGTGGGCAGCCCAGCAAGT-CGGGTGTTACA-----GTTTCCCTTCTCTTTTACCTGACCCA-CACCAGAGCTCCCCATGGGAAGAG-------ACTCACGACAACTTCTGCAGCAAGTTCGTTGGGTGTCCTATGGTCTCATACAGCAACTTGGCACCCTCGTCCAGGAGCAGATTGGCTGAGAGGTGTAGGTGCCTCAGGGACTGGTTCGCTTTGAGAAGAAAGGAGAAATCCGCCCACTGCTCTGGGGTGGCCGAGTGGCCTCCAAACCTGTGGGAAGAGTGGGAGTCAGTCATTCGTTTGTGAGGACAGAGAGCACCAGATCAGC
i calJac3.chr22             C 0 I 5
s canFam3.chr1              102623731 383 + 122678785 GCATGAGCCA-CATACCTGGGACCAGAAATGGGAACCAGGTGTCCACATCAGTAGGAGGTCCCATATGGGTAGTCCAGCAAATCCAGATTTTACCCACTGCTCTTCCCTATGTGGCCCCAAACATAGGAAAAGAGATGCTCCCAGGGAGAGAGGCAGTACTTACGACAGTCTCTGCAGGAAGCATTTTGGGTGTCTCAGAGTTGTGCACAGCAACTTGGCACTCTCATCTGGGAGCTCATTGGCTGTGAGGTTCAGGCATGTCAGGGACTGGTTGATTTTGAGGGAGGAGGAGAGATGGGCCCATTGCTGAGTGGTGGCAGAACAAGATACCAACCTGCCAGAAGAATGGGAACACATTATTTTTTTTAAAG---------TAtttttttaac
i canFam3.chr1              C 0 C 0

a score=41193.000000
s hg38.chr19_GL949751v2_alt    853081 11 +   1002683 ttttttttttt
s panTro4.chr19              59854825 11 +  63644993 ttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56766043 11 +  60714840 ttttttttttt
i ponAbe2.chr19             I 20 C 0
s nomLeu3.chr10             103301124 11 - 106955855 ttttttttttt
i nomLeu3.chr10             I 12 C 0
s rheMac3.chr19              60591395 11 +  64156825 ttttttttttt
i rheMac3.chr19             I 2 C 0
s macFas5.chr19              55730739 11 +  59248254 ttttttttttt
i macFas5.chr19             I 2 C 0
s papAnu2.chr19              47833515 11 +  51301725 ttttttttttt
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               47546198 11 +  50890351 ttttttttttt
i chlSab2.chr6              I 320 C 0
s calJac3.chr22              45897682 11 +  49145316 ttttttttttt
i calJac3.chr22             I 5 C 0
s canFam3.chr1              102624114 11 + 122678785 ttttatttatt
i canFam3.chr1              C 0 I 3380

a score=359343.000000
s hg38.chr19_GL949751v2_alt    853092 126 +   1002683 ---------------gagacagagtttcactctgttgcccagtctggaatgcaaaggcgtgatctcacctcactgcagcctccgcctcccgggttcaagctattctcctgcctcagcctccgaagtagctgggattacagg
s panTro4.chr19              59854836 126 +  63644993 ---------------gagacagagtttcactctgttgcccagtctggaatgcaaaggcgtgatctcacctcactgcagcctccgcctcccgggttcaagctattctcctgcctcagcctccgaagtagctgggattacagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56766054 126 +  60714840 ---------------gagacagagtttcactctgttacccagtctggaatgcaaaggcgtgatctcacctcactgcagcctccacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103301135 126 - 106955855 ---------------gagacagagtttcactctgttgcccagtctggagtgcaaaggtgtgatctcacctcactgcagcctccgcctcccgggttcaagccattcttctgcctcagcctcccaagtagctgggatgacagg
i nomLeu3.chr10             C 0 M 100
s rheMac3.chr19              60591406 126 +  64156825 -------------gggggac--agtttcactctgtcacccaggctggagtgcaatggcgtgatctcacctcactgcagcctccacctcccgggttcaagcaattctcctgcctcagcctcccaagcagctgggattacagg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55730750 139 +  59248254 tttttttttttgggggggac--agtttcactctgtcacccaggctggagtgcaatggcgtgatctcacctcactgcagcctccacctcccgggttcaagcaattctcctgcctcagcctcccaagcagctgggattacagg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47833526 128 +  51301725 tttt-----------gggac--agtttcactctgtcacccaggctggagtgcaatggcgtgatctcacctcactgcagcctccacctcccgggttcaagcaattctcctgcctcagcctcccaagcagctgggattacagg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47546209 124 +  50890351 ---------------gagac--agtttcactctgtcacccaggctggagtgcaatggcgtgatctcacctcactgcagcctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagcagctgggattacagg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45897693 141 +  49145316 ttttttttttttaaggagacagagtttcaccctgttgctggggctggagcccaatggcacaatctcggctcactgcagcctccgcctcccaggttcaagcaattctcctgcctcaacctctcaagtagctaggattacagg
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102624125 3380 + 122678785 I

a score=171564.000000
s hg38.chr19_GL949751v2_alt    853218 85 +   1002683 ----------cattc---gccaatttttgtatttttagtagagacgggatttcaccatgttggccacactggtcttgaactcctgacctcaggtgatc
s panTro4.chr19              59854962 85 +  63644993 ----------cattc---gccaatttttgtatttttagtagagacaggatttcaccatgttggccacactggtcttgaactcctgacctcaggtgatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56766180 85 +  60714840 ----------catac---gccaatttttgtatttttagtggagatgggatttcaccatgttggccacactggtcttgaactcctgacctcaggtgatc
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60591532 85 +  64156825 ----------cacac---gccaatttttgtatttttagtagagatgggatttcaccatgttgaccatgctggtcttgaactcctgacctcaggtaatg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55730889 85 +  59248254 ----------cacac---gccaatttttgtatttttagtagagatgggatttcaccatgttgaccatgctggtcttggactcccgacctcaggtaatc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47833654 85 +  51301725 ----------cacac---gccaatttttgtatttttagtagagatgggatttcaccatgttgaccatgctggtcttgaactcccgacctcaggtaatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47546333 85 +  50890351 ----------cacac---gccaatttttatatttttagtagagatgggatttcaccatgttgaccatgctggtcttgaactcccgacctcaggtaatc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45897834 86 +  49145316 cacatggcaccatgcccggctaatttttgta-ttttattaaagaggg-----------gtttgccaggctggtctcaaactcctgacgtcaggtgatt
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102624125 3380 + 122678785 I
e nomLeu3.chr10             103301261 100 - 106955855 M

a score=614228.000000
s hg38.chr19_GL949751v2_alt    853303 214 +   1002683 cacccaccttggcctaccgaagtactgggattacaggtgtgagccaccgcgcctggcc-CAGATCAGCTTCTTCTGCTTCACTTCCCAAGACATTATGTCTTTGGTTTATCTCATTCTA--CTCATGCCTCCAACCCTGGCCTGAATTACTGGAGAGATCTAATGTTGCCTCTGCTTCTTCAAGTATCCCCATGGCCATTAGGGTAACATCCAGCCA
s panTro4.chr19              59855047 214 +  63644993 cacccaccttggcctcccgaagtgctgggattacaggcgtgagccaccgcgcctggcc-CAGATCAGCTTCTTCTGCTTCACTTCCCAAGACATTATGTCTTTGGTTTATCTCATTCTA--CTCATGCCTCCAACCCTGGCCTGAATTATTGGAGAGATCTAATGTTGCCTCTGCTTCTTCAAGTATCCCCATGGCCATTAGAGTAACATCCAGCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56766265 214 +  60714840 cacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcacctggcc-CAGATCAGCTTCTTCTGCTTCACTTCCCAAGACATTATGTCTTTCGTTTATCTCATTCTA--CTCATGTCTGCAACCCTGGCCTGAATTATTGGAGAGATCTAATGTTGCCTCTGCTTCTTCAAGTATCCCCATGGCCATTAGAATAACATCCAGCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103301361 214 - 106955855 cacccacctcggcctcacaaagtgcagggattacaggcgtgagccaccatgcctggcc-CAGATCAGCTTGTTATGCTTCACTTCCCAAGACAATATGTCTTTGGTTTATCTCATTCTA--CTCATGTCTCCAACCCTGGCGTGAATTATTGGAAAGATCTAATGTTGCCTCTGCTTCTTCAAGTATCCCCATAGCCACTAGAGTAACATCCAGCCC
i nomLeu3.chr10             M 100 C 0
s rheMac3.chr19              60591617 213 +  64156825 cacccacctcggcctctcaaagtgctgggattacaggtgtgagccaccacgcccggcT-CAGATCAGCTTCTTCTGCTTCACTTCCCAAAACG-TACGTCTTTGGTTTATCTCATTCTA--CTCATGTCTCCAACCCTGGCCTGAATTATTGGAGAGATCTAATCTTTCCTCTGCTCTTTCAAGTATCCCCATGGCCATTAGAGTAACATCCAGCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55730974 213 +  59248254 cacccacctcggcctctcaaagtgctgggattacaggtgtgagccaccacgcccggcT-CAGATCAGCTTCTTCTGCTTCACTTCCCAAAACG-TACGTCTTTGGTTTATCTCATTCTA--CTCATGTCTCCAGCCCTGGCCTGAATTATTGGAGAGATCTAATCTTTCCTCTGCTCTTTCAAGTATCCCCATGGCCATTAGAGTAACATCCAGCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47833739 211 +  51301725 cacccacctcggcctctcaaagtgctgggattacaggtgtgagccaccacacctggct-cacatTAG---CTTCTGCTTCACTTCCCAAAACATTATGTCTTTGGTTTATCTCATTCTA--CTCATGTCTCCAACTCCGGCCTGAATTATTGGAGAGATCTAATCTTTCCTCTGCTCTTTCAAGTATCCCCATGGCCATTAGAGTAACATCCAGCCa
i papAnu2.chr19             C 0 I 5286
s chlSab2.chr6               47546418 214 +  50890351 cacccacctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcT-CAGATCAGCTTCTTCTGCTTCACTTCCCAAAACGTTACGTCTTTGGTTTATCTCATTCTA--CTCATGTCTCCAACCCTGGCCTGAATTATTGGAGAGATCTAATCTTTCCTCTGCTCCTTCAAGTATCCCCATGGCCATTAGAGTAACATCCAGCCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45897920 216 +  49145316 cgcccacctcggcctcccaaa-tgctgggattaaaggtgtgagccaccacacccggccTCTTATCAGCTTCTTATGCTTCACTTCCCAAAACACTGTGTCTTTGGTTTATCTCATTTTACTCTCCTTTCTCCAACCCTGGCCTGAATTATTGGAGAAATCTAATCTTTCCTCTGCTTCTTCAAGTTTCCTCATGGCCACTGGAGCTACGTCCAGCCT
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102624125 3380 + 122678785 I

a score=1159471.000000
s hg38.chr19_GL949751v2_alt    853517 533 +   1002683 CTTCTCCAAGAGATTGTAATACAATTCTGTGCAATGTTTCACCAAAACGGCCTGTGTGGATGATTTTGCAGGGGGGAAAAAAAAAttttttttttgagacaggatctcgctctgttgcccaggctggagtgcagtggcatgatcacaggtcaccacaac--ctgtctcctgggctcaaatgatcctccc-acctcagcatccactgtagctgggactaGAAGGGGCAA----ATTGATGCTTAATACTCAAAATAAAAATTTTATCCTggccaggcgcagtggttcatgcctgtaatcctagcactttggga---ggccgagacaggcggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccct-gtctctattaaaaatacaaacatttgccaggcgtggtggtgcacgcctgtaaccccagctactcgggaagctgaggcag---aactgcttg-aacccaggaggcggaggttgcagtgaa-cgagatcgcgccactgcgctccagcctgggtgacaagaataaaact
s panTro4.chr19              59855261 540 +  63644993 CATCTCCAAGAGATTGTAATACAATTCTGTGCAATGTTTCACCAAAACGGCCTGTGTGGATGATTTTGTAGGCGG-AAAAAAAAAtttttttttttagacaggatctcgctctgttgcccaggctggagtgcagtggcatgatcacaggccaccacaac--ctgtctcctgggctcaaatgatcctccc-acctcagcatccactgtagctgggactaGAAGGGGCAAGCAAATTGATGCTTAATACTCAAAATAAAAATTTTATCCTggccaggtgcagtggttcatgcctgtaatcctagcactttggga---ggccgaggcaggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctattaaaaatacaaacatttgccaggcgtggtggtgtatgcctgtaaccccagctactcgggaagctgaggcaggagaactgcttg-aacccaggaggcagaggttgcagtgaa-cgagatcgcaccactgcactccagcctgggtgacaagaataaaact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56766479 533 +  60714840 CATCTCCAAGAGATTGTAATACAATTCTGTGCAATGTTTCACCAAAATGGCCTGTGTGGAGGATTTTGTAGGGGG---AAAAAAAttttttttttgaaacagcatatcgctctgttgcccaggctagagtgcagtggcatgatcacaggtcaccacaac--ctgtctcctgggctcaaatgatcttccc-acctcagcctccagtgtagctgggactaGAAGGGGCAA----ATTGATGCTTAATACTCAAAATAAAATTTTTATCCTggccaggtgcagtggttcatgcctgtaatcctagcactttggga---ggccgaggcaggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaacccc-gtctctattaaaaatacaaacatttgccaagcgtggtggtacatgcctgtaaccccagctactcgggaagctgaggcaggagaactgcttg-aacccaggaggcagaggttgcagtgaa-tgagatcgcactactgcactccagcctgggcaacaagagtaaaact
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103301575 530 - 106955855 CATCTCCAAGAGATTGTAATACAATTCTGTGCAATGTTTCACCAAAACGGCCTGTGTGGATGATTTTGTAGGGGG---AAAAAAAttttttttttgagacaggatctcgctctgttgcccaggctggagtgcagtggcatgatcacaggtcaccacaac--ctgtctcctgggctcagatgatcctccc-acctcagcctccagtgtagctggaactaGAAAGGGCAA----ATTGATGCTTAATACTCAAAATAAAAATTTTATCCTggccaggtacagtggttcatgcctgtaatcctagcactttggga---ggccgaggcaggtggttcacttgagatcaggagttcgagaccagcctggccaacatggtgaaacccc-gtctctattaaaaatacaaacatttggcaggcgtggtggtgcgtgcctgtaacccgagctacttgggaggctgaggcaggagaactgcttg-aacccaggaggcagaggttgcagtgaa-tgagatcgcaccactgcactccagcctgg---acaagaggaaaact
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60591830 540 +  64156825 CATCTCCAAGAGACTGTAATACAATTCTGTGCAATGTTTCACCAAAATGGCCTGTGTGGAAGATTTTGTAGGGAA---GAAAAAA-AttttttttgagacaggatctcgctctgttgcccaagctggagtgcagtggcatgatcacagctcaccacaacctctgtctcctgggctcaaatgatcctcccaacctcagcctctagtgtagctgggactaGAAGGGGCAA----ATTGATGCTTAATACTCAAAATAAAAATTTTATCCTggccaggtgcagtggctcatgcctgcaatcctagcactttgggatccggcccaggcaggtggatcacttgaggtcagaagttcaagaccagcctggccaacgtggtgaaacccc-gtctctactaaaaatacaaacatttgttgggcatggtggtacatgcctgtaatcccagctgcttgggaggctgaggcaggagaatcgcttgaaacccaggaggcataggttgctgtgagccgagatcgcaacactgcactccagccttggtgacaagagtaaaact
i rheMac3.chr19             C 0 I 7
s macFas5.chr19              55731187 538 +  59248254 CATCTCCAAGAGACTGTAATACAATTCTGTGCAATGTTTCACCAAAATGGCCTGTGTGGATGATTTTGTAGGGAA---GAAAAAA-Attttttttgagacaggatctcgctctgttgcccaagctggagtgcagtggcatgatcacagctcaccacaac--ctgtctcctgggctcaaatgatcctcccaacctcagcctccagtgtagctgggactaGAAGGGGCAA----ATTGATGCTTAATACTCAAAATAAAAATTTTATCCTggccaggtgcagtggctcatgcctgcaatcctagcactttgggatccggccgaggcaggtggatcacttgaggtcagaagttcaagaccagcctggccaacgtggtgaaacccc-gtctctactaaaaatacaaacatttgttgggcatggtggtgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaacccaggaggcataggttgctgtgagccgagatcgcaacactgcactccagccttggcgacaagagtaaaact
i macFas5.chr19             C 0 I 112
s chlSab2.chr6               47546632 527 +  50890351 CATCTCCAAGAGACTGTAATACAATTCTGTGCAATGTTTCGCCAAAATGGCCTGTGTGGATGATTTTGTAGGGGG---GAAAACAttttttttttgagacaggatttcgctctgttgcccaagctggagtgcagtggcatgatcacagctcaccacaacctctgtctcctgagctcaaatgatcctcac-acctcagcctccagtgtagctgggactaGAAGGGGCAA----ATTGATGCTTAATACTCAAAATAAAAATTTTATCCTggccaggtgcagtggtccatgcctacaatcctagcactttggga---ggccgaggcaggtggatcacttgaggtcagaagttcaagaccagcctggccagcgtggtgaaacccc-gtctctactaaaaatacaaacatttgccgggcatagtggtgcatgcctgtaatcccagctactcgagaggctgaggcaggagaatcgcttg-aacccaggaggcataggttgctgtgagccgagatcgcaacactgcactccag---------caagagtaaaact
i chlSab2.chr6              C 0 I 7
s calJac3.chr22              45898136 530 +  49145316 CGTCTCCAAGAGACTGTAATAGAATTCTGTGTAACGTTTCACCAACAGGGCCTGTGGGGATGA-TTTGTAGGGGA---AAA-----Gttgtttttgagacaggaactcgctctgttgcccaggctggagtgcagtggcgtgatcatggctcagcaccacctctgtctccagggctcaagcaatcctcct-acctgggactccagcatagctgggactagaagggggaa----attgatgcttaatactcaaaataataagtttatcctggccaggcaggatggcttttgcctataatcccagcacttgggga---ggcagaggcaagttgatcacttgaggccaggagttcgagacaagcctggccagcatggtgaaccccc-atctctactaaaaatacaaaaattagctgggtgtggtggtgtgtgcctgtaatcccaggtacttgggaggctgagacaggagaatcacttg-aacccgggaggcagaggttgcagtgagctgagatcatgccattgcactccagcctgggtgacaagaataaaact
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102624125 3380 + 122678785 I
e papAnu2.chr19              47833950 5286 +  51301725 I

a score=28256.000000
s hg38.chr19_GL949751v2_alt    854050 25 +   1002683 gtctcaaagaaaaaaaaaaaaaaaa
s panTro4.chr19              59855801 24 +  63644993 gtctcaaagaaaaaaaaaaaaaaa-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767012 22 +  60714840 gtctcaaagaaaaaaaaaaaaa---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103302105 22 - 106955855 gtctcaaagaaaaaaaaaaaaa---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60592377 22 +  64156825 ccctcaaaaaaaaaaaaaaaac---
i rheMac3.chr19             I 7 C 0
s chlSab2.chr6               47547166 25 +  50890351 ctctcaaaaaaaagaaaaaaaaaaa
i chlSab2.chr6              I 7 I 1
s calJac3.chr22              45898666 23 +  49145316 --gtcaaaaaaaaaaaaaaaaaaaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102624125 3380 + 122678785 I
e papAnu2.chr19              47833950 5286 +  51301725 I
e macFas5.chr19              55731725 112 +  59248254 I

a score=1074725.000000
s hg38.chr19_GL949751v2_alt    854075 533 +   1002683 aagaTTCTCAT-TGAGTGCAGAGAaggttgcatgctccttatgaatacctaactcctgatgatctgagattgatgatccattctcctcagGCTCCCAAAGTGCGAGGATCAT-GCACTCCATA-GGATCAGGCACCAACGATTAGCTCCTGTGCC---tgatctgagatcgaacagtttcatcccaaaactacccccaaaccc--gtctgtggaaaaaactgtcttgtgcaaaaccggcccgcggtgcagaaaaggctgggggccactgCTCTCAATCCCAACAATTAGGCAAGGTGCAGTCAGGAATAGCATGTCCCTAAAGCTGGAACCCAGCACAGAATTCGGGGTGTTTCTTTGCATGGATAGCTGGTTATGCAACACAGAAGACAAGCTGGTGGGGGAAAGAGGAGAGGCCGACTCCCCCACACAGGCCTGTTTGAGGAATACATTCCCTGTCTGGGACGGCATCTGGAGTGGTTACCCTTTTTCCTAGATCCCCCAGCAACACGGTGCAGTGGACTCCAGGTGCTGGGGAGAGCC
s panTro4.chr19              59855825 529 +  63644993 --gaTTCTCAT-TGAATGCAGAGGaggttgcaggctccttatgaatacctaactcctgatcatctgagattgatgatccattctcctcaggctcccaaagtgcggggatcaT-GCACTCCATA-GGATCAGGCACCAATGATTAGCTCCTGTGCC---tgatctgagattgaacagtttcatcccaaaactacccccaaaccc--gtctgtggaaaaa-ctgtcttgcgcaaaaccggcccgcggtgcagaaaaggctgggggccactgCTCTCAATCCCAACAATTAGGCAAGGTGCAGTCAGGAACAACATGTCCCTAAAGCTGGAACCCAGCACAGAATTCGGGGTGTTTCTTTCCATCGATAGCTGGTTATGCAACACAGAAGACAAGCTGGCGGGGGAAAGAGGAGAGGCCGACTCCCC-ACACAGGCCTGTTTGAGGAATACATTCCCTGTCTGGGACGGCATCTGGAGTGGTTACCCTTTTTCCTAGATCCCCCGGCAACGCGGTGCAGTGGACTCCGGGTGCTGGGGAGAGCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767034 531 +  60714840 --GATTCTCA--TGAGTGCAGAGAaggttgcatgctctttatgagtacctaactcctgatgatctgagattgatgatccatttacctctggctcccaaagtgctgggatcatagCACTGCATA-AGATCAAGCACCAACGATTAGCTCCTGTGCC---tgatctgagattgaacggtttcatcccaaaactacccccaaacccctgtctgtggaaaaa-ctgtcttgcacaaaaccgacccctggtgcagaaaaggctgggggccactgCTCTCAAACCCAACAGTTTGGCAAGGAGCAGTCAGGAATAGCACATCCCTAAAGTTGGAACCCAGCACAGAATTCCGGGTGTTTCTTTGCATCAGTAGCTGGTTATGCAACACAGAAGTCAAGCTGGCAGGGGAAAGAGGAGAGGCTGACTCCCC-ACACAGGCCTGTTTGAGGAATACATTGCCTGTCTGGGACGGCATCTGGAGTGGTTACCCTTTTTCCTAGATCCGCCGGCAACACGGTGCAGTGGACTCCAGGTACTGGGGAGAGCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103302127 531 - 106955855 --GATTCTCA--TGAGTGCAGAGAaggttgcatgctccttctgagtaccgaactcctgatgatctgagattgatgatccattcacctcaggctcccaaagtgctgggatcatagCACTGCATA-GGATCAAGCACCAACGATTAGCTCCTGTGCC---tgatctgagattgaacagtttcatcccaaaactacccgcaaacccctgtctgtggaaaaa-ctgtcttgcacaaaaccgggccccggtgcagaaaaggctgggggccactgCTCTCAATCCCAACAGTTAGGCAAGGTGCAGTCAGGAATAGCACGTCCCTAAAGCTGGAACCCAGCACAGAATTCGGGGTGTTTCTTTGCATTGATAGCTGGTTATGCAACACAGAAGTCAAGCTGGCGGGGGAAAGAGGAGAGGCTGACTCCAG-ACACAGGCCTGTTTGAGGAATACACTCCCTGTCTGGGATGGTATCTGGAGTGTTTATCCTTTTTCCTAGATCCCCCTGCAACACGGTGCAGTGGACTCCGGGTACTAGGGAGAGCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60592399 536 +  64156825 aaGATTCTCATAGAAGTACAGAGAaggttgcatgctcc--atgagtacctaactcctgatgatctgagattgaTgatccattcacctcagactcccaaagtgctgggatcatagCACTGCATAGGGCTCAGGCACCAACAATCAGCTTCagtgcccgatgatctgagattgaacagtttcatcccaaaacta-ccccgaacctctttctatggaataa-ttctcttgcacaaaatcggcccccattgcagaaaaggctgggggccgctgCTCTCCATCCCAACATGTAGGCAAGCTGCAGTCAGGAATAGCACGTCCCTAGAGCCGGAACACAGCACAGAATTCGGGGGGTTTCTTTGCATCGAGAGCTGGTTATGCGACGCAGAAGCCAAGCTGGCGGGGGAAAGAGGAGAGGCTGACTCCCC-ACACAGGCCTGTTTGAGGAATACATTCCCCGTCTGGGACGGCATCCAAAGTGGTTACCCTTTTCCCTAGATCCCCCGGCAACGTGGTGCAGCGGACTCTGGGTACTGGGGAGAGCG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55731837 538 +  59248254 AAGATTCTCATAGAAGTGCAGAGAaggttgcatgctccatatgagtacctaactcctgatgatctgagattgatgagccattcacctcagactcccaaagtgctgggatcatagCACTGCATAGGGATCAGGCACCAACAATTAGCTTCagtgcccgatgatctgagattgaacagtttcatcccaaaacta-ccccgaacctctgtctatggaataa-ttctcttgcacaaaatcggcccccattgcagaaaaggctgggggccgctgCTCTCCATCCCAACATGTAGGCAAGCTGCAGTCAGGAATAGCACGTCCCTAGAGCCGGAACACAGCACAGAATTCGGGGGGTTTCTTTGCATCGAGAGCTGGTTATGCGACGCAGAAGCCAAGCTGGCGGGGGAAAGAGGAGAGGCTGACTCCCC-ACACAGGCCTGTTTGAGGAATACATTCCCCGTCTGGGACGGCATCCAAAGTGGTTACCCTTTTCCCTAGATCCCCCGGCAACGCGGCGCAGCGGACTCTGGGTACTGGAGAGAGCG
i macFas5.chr19             I 112 C 0
s chlSab2.chr6               47547192 539 +  50890351 aaGATTCTCATAGGAGTGCAGAGAaggttgcacgctccatgtgagtacctaactcctgatgatctgagattgatgatccgtttacctcagactcccaaagtgctgggatcatagCACTGCATAGGGATCAGGCAGCAACAATTAGCTTCagtgcccgatgatctgagattgaacagtttcatcccaaaactacccccgaacctctgtctatggaataa-ttctcttgcacaaaatcggcccccattgcagaaaaggctggggaccgctgCTCTCCATCCCAACATGTAGGCAAGCTGCAGTCAGGAATAGCACGTCCCTAAAGCCGGAACACAGTACAGAATTCGGGGTGTTTCTTTGCATCGAGAGCTGGTTATGCGACCCAGAAGTCAAGCTGGCGGGGGAAAGAGGAGAGGCTGACTCCCC-ACACAGGCCTGTTTGAGGAATACATTCCCTGTCTGGGACAGCATCCAAAGTGGTTACCCTTTTCCCTAGATCCCCTGGCAACGTGGTGCAGCGGACTCTGGGTACTGGGGAGAGCG
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45898689 479 +  49145316 aggaatctcataggactat-gagaaggttgcatgctccctgtgagtccctaactcctaatgatctg-gactgatgatctatccgcctcaggctcccaaagtactgggatcacCTCACTGCACGGGGATCAGGCACCA-------------GAgcctgatgatctgagattgaacagtttcatcccaaaacttcccccaaacccctgtctgtggaaaac-ctgtcttgcacaaaaccggtccccagtgcagaaaaagctggcggccgctgCTCTCAATCCCAGCAGGTAGGCGAGAGGCAGTCAGGGGTAGCCCGTTTCTAAAGCTGGAACACAGCACAGAGTTCTGGGTGTTTCTTTGCATGGAGAGCTGGTCATGTCACACCGAAGTCAAGCTGGTGGGGG---GAAGAGAGGCTGACACCCC-ACACAGGCCTGTTTGAGGGATATGTTTCCTGCCTG------------------------------------------GCAACGCGGTGTAGAGGACTCCGGGTCCTCGGGAGAGCC
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102624125 3380 + 122678785 I
e papAnu2.chr19              47833950 5286 +  51301725 I

a score=234680.000000
s hg38.chr19_GL949751v2_alt    854608 94 +   1002683 GTGACCGTGAGACCCACCTCAGGTACTGCAGGTTGCATTTATGATTTCTGAGCAGGTCACACAGCATCAGCATCATCGTGCGTTCCCACTCGAT
s panTro4.chr19              59856354 94 +  63644993 GTGACCGTGAGACCCACCTCAGGTACTGCAGGTTGCATTTATGATTTCTGAGCAGGTCACACAGCATCAGCATCATCGTGCGTTCCCACTCGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767565 94 +  60714840 GTGACCGTGAGACCCACCTCAGGTACTGCAGGTTGCATTTATGATTTCTGAGCAGATCACACAGCATCAGCATCATTGTGCGTTCCCACTCGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103302658 94 - 106955855 GTGACCGTGAGACCCACCTCAGGTACTGCAGTTTGCATTTATGATTTCTGAGCAGATCACACAGCATCAGCATCATCGTGCGTTCCCACTCGAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60592935 94 +  64156825 GAGACCGTGAGACCCACCTCAGGTACTGCAGGTTGCATTTGTGATTTCTGAGCAGATCACACAGCAGCAGCAGCATCGTGCGTTCCCACTCGAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55732375 94 +  59248254 GAGACCGTGAGACCCACCTCAGGTACTGCAGGTTGCATTTGTGATTTCTGAGCAGATCACACAGCAGCAGCAGCATCGTGCGTTCCCACTCGAT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47547731 94 +  50890351 GAGACCGTGAGACCCACCTCAGGTACTGCAGGTTGCATTTGTGATTTCTGACCAGATCACACAGCAGCAGCAGCATCGTGCGTTCCCACTCGAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45899168 94 +  49145316 AAGACCGTGAGACGCACCTCAGGTACTGGAGGTTGCCTCTGGGAGTCCTGAACAGGTCACACATCAGCAGCAGCATCGTGCGTTCCCACTCGAT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102627505 88 + 122678785 GTGATGGTGAGATATACCTGAGGTATTGCAGATTACATTTTGGGTGTCTCAAGATTTCACACAAAATGGGAAGCATATCA---TTCTGGTC---
i canFam3.chr1              I 3380 C 0
e papAnu2.chr19              47833950 5286 +  51301725 I

a score=351939.000000
s hg38.chr19_GL949751v2_alt    854702 114 +   1002683 GTGCCCTGCCAGGGTCAGGTGCGTGAGGGTCTTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTACGCGGTGTCAGGGGTGACGTTTTTAATCCTAGGGAAAAGCAGAAGAGA
s panTro4.chr19              59856448 114 +  63644993 GTGCCCCGCCAGGGTCAGGTGCGTGAGGGTCTTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTACGCGGTGTCAGGGGTGACGTTTTTAATCCTAGGGAAAAGCAGAAGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767659 114 +  60714840 GTGCCCTTCCAGGGTCAGGTGCGTGAGGGTCTTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTACGCAGTGTCAGGGGTGACGTTTTTAATCCTAGGGAAAAGCAGAAGAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103302752 114 - 106955855 GTGCCCTTCCAGAGTCAGGTGCGTGAGGGTCTTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTACGCAGTGTCAGGGGTGACGTTTTTAATCCTAGGGAAAAGCAGAAGAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60593029 114 +  64156825 GTGCCCTTCCAGGGTCAGGTGCGTGAGGGTCCTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTAAGCAGTGTCAGGGGTGACGTTTTTAATCCTAGGGAAAAGCAGGAGAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55732469 114 +  59248254 GTGCCCTTCCAGGGTCAGGTGCGTGAGGGTCCTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTAAGCAGTGTCAGGGGTGACGTTTTTAATCCTAGGGAAAAGCAGGAGAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3416370 112 -  51301725 GTG-CCTTGCAGGGTCAGATGCGTTACAGTCTTGTGACCTCGAAGAGCTAGGCAGAGGTTCCGATGAGCATCAGCTGGGAAAACGTTTTTGAACCTAgggaaaa-caaaagtga
i papAnu2.chr19             T 54731 I 1199
s chlSab2.chr6               47547825 114 +  50890351 GTGCCCTTCCAGGGTCAGGTGCGTGAGGGTCTTCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTAAGCAGTGTCAGGGGTGACATTTTTAATCCTAGGGAAAAGCAGAAGAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45899262 114 +  49145316 ATGCCCTTCCAGGGTCAGGTGAGTGAGGGTCGGCTTCCCAATGAAAGCAAGACAGAAGTCCCGGTAAGCACTGTCAGGGGTGACGTTTTTAATCCTAGGAAAAAGCAAGAGAGA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102627593 113 + 122678785 ATTTCCTTGGAGAGTCAGATGCGTGAGAGTCTCATGACCACCAAAAGCAATGCAGAAGTTTCTATAAGCGTCTGCTGGGAAAATATTTTTGAGGCTAGGGAAAGG-ATAAGAAA
i canFam3.chr1              C 0 C 0

a score=157049.000000
s hg38.chr19_GL949751v2_alt    854816 75 +   1002683 TTCCACTTGGAGTGATTAATACTCACATTGTGTGGAGGCATGTATAAACAAAAAGCTGTTTCACATTTAGAAATT
s panTro4.chr19              59856562 75 +  63644993 TTCCACTTGGAGTGATTAATCCTCACATTGTGTGGAGGCATGTATAAACAAAAAGCTGTTTCACATTTAGAAATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767773 75 +  60714840 TTCCACTTGGAGTGATTAATCCTCACATTGCGTAGAGGCGTGTATAAACAAAAAGCTGTTTCCCATTTAGAAATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103302866 54 - 106955855 ---------------------CTCACATTGTGTAGCGGCATGTATAAACAAAAAGCTGTTTCACATTTAGAAATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60593143 75 +  64156825 TTCCACTTTGAGCGAGCAATCCTCACGTTGTGTAGAGACATGTATAAACGAAAAGCTGCTTCACATTTAGAAACT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55732583 75 +  59248254 TTCCACTTTGAGCGAGCAATCCTCACATTGTGTAGAGACATGTATAAACGAAAAGCTGCTTCACATTTAGAAACT
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47547939 75 +  50890351 TTCCACTTTGAGCGAACAATCCTCACATTGTGTAGAGACATGTATAAACAAAAAGCTGTTCCACATTTAGAAACT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45899376 75 +  49145316 TTCCACTTGGAGTGTTTAATCCTCACATTGTGTAGAGGCATGTATAAACAAAAAGCTGTTTCAGATTTAGAAACT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102627706 59 + 122678785 -------------GGTGAAATCTTGCATT---TATATATACATGAGAACAAAGGGCTGCAACAGGTTTAAACACT
i canFam3.chr1              C 0 I 1798
e papAnu2.chr19               3416482 1199 -  51301725 I

a score=315927.000000
s hg38.chr19_GL949751v2_alt    854891 137 +   1002683 ATTAGAAGTTCTTggccgggtgcagtggctcgtgtctgtaaccccagcactttgggaggctgaggcaggaggataacctgaggtcaggagtctgagaccaacctgggcaacatggtgaaactccatctctacaaaaa
s panTro4.chr19              59856637 137 +  63644993 ATTAGAAGTTCTTggccgggtgcagtggctcgtgtctgtaaccccagcactttgggaggctgaggcaggaggataacctgaggtcaggagtctgagaccaatctgggcaacatggtgaaactccatctctacaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767848 137 +  60714840 ATTAGAAGTTCTTggccaggtgcagcggctcacgtctgtaaccccagcactttgggagactgaggcaggaggataacctaaggtcagaagtctgagaccaacctgggcaacatggtgaaaccccatctctacaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103302920 137 - 106955855 ATTAGAAGTTCTTggccgggtgcagcggctcatggctgtaaccccagcactttgggaggctgaggcaggaggataacctgaggtcaggagtctgagaccaacctgggcaacattgtgaaaccccatctctacaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60593218 137 +  64156825 ATTAGAAGTTCTTggccaggcacggcggctcgtgtctgtaatcccagcactttgggaggccgaggcaggaggatcacccgaggtcaggagttcgagaccagcctgggcaacatgttgaaaccccatctctacaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55732658 137 +  59248254 Attagaagttcttggccaggcacggcggttcgtgtctgtaatcccagcactttgggaggccgaggcaggaggatcacccgaggtcaggagttcgagaccagcctgggcaacatgttgaaaccccatctctacaaaaa
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47548014 137 +  50890351 ATTAGAAGTTCTTggccaggcacggcggctcgtgtctgtaatcccagcactttgggaggccgaggcaggaggatcacccgaggtcaggagttcgagaccagcctgggcaacatggtgaaaccccatctctacaaaaa
i chlSab2.chr6              C 0 I 1094
s calJac3.chr22              45899451 135 +  49145316 ATTAGAAGTTCCTggccaggcgcggtggctcacgtctgtaat--tggctctttgggaggccgaggcaggaggataacccgaggtcaaaagttcgagaccagcctgggcaacatggtgaaagcccatctctacaaaaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e papAnu2.chr19               3416482 1199 -  51301725 I

a score=254.000000
s hg38.chr19_GL949751v2_alt    855028 3 +   1002683 at----a
s panTro4.chr19              59856774 3 +  63644993 at----a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767985 7 +  60714840 atacaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103303057 7 - 106955855 atacaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60593355 3 +  64156825 at----a
i rheMac3.chr19             C 0 I 870
s macFas5.chr19              55732795 3 +  59248254 at----a
i macFas5.chr19             C 0 I 4
s calJac3.chr22              45899586 1 +  49145316 ------a
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I

a score=65174.000000
s hg38.chr19_GL949751v2_alt    855031 106 +   1002683 aat---------------tagct-------------------------ggggccgaggcaggcagatcgcctgaggtcaggagttcgagaccagcctggccaacatggggaagccccgtctctactaaaaatacaaaaatta--gctg
s panTro4.chr19              59856777 106 +  63644993 aat---------------tagct-------------------------ggggccgaggcaggcagatcgcctgaggtcaggagttcgagaccagcctggccaacatggcgaagccccgtctctactaaaaatacaaaaatta--gctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56767992 106 +  60714840 aat---------------tagct-------------------------ggggccgaggcaggcggaccgcctgaggtcaggagttcgagaccagcctggccaacatggcaaagccccgtctctactaaaaatacaaaaatta--gctg
i ponAbe2.chr19             C 0 I 442
s nomLeu3.chr10             103303064 106 - 106955855 aat---------------tagct-------------------------ggggccgaggcaggtggatcgcctgaggtcaggagctcgagaccagcctggccaacatggcgaagccctgtctctactaaaaatacaaaaatta--gctg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55732802 148 +  59248254 aatgaaggccaggtgcagtagctcacgtctataatcccagcactttgggagtccgaggcaagagaatcacttgaggtcaggagtttgagaccagtctgggcaacatggtgaaaccccaactccacaaaaaatacaaaaattaAggccg
i macFas5.chr19             I 4 C 0
s calJac3.chr22              45899587  16 +  49145316 ----------------------------------------------------------------------------------------------------------------------------------atacaaaaatta--gctc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=68481.000000
s hg38.chr19_GL949751v2_alt    855137 156 +   1002683 cacatggaggggcatgcttgtagtcccaggtattcgggaggctgaggtaggagaatcacttgaatccaggaggcagaggttgcagtgagccgagaccgcaccactgcactccagcctgggcaacagagcaagactccatctc------aaaagaaaaaaaaa
s panTro4.chr19              59856883 156 +  63644993 cacatggaggttcatgcttgtagtcccaggtatttgggaggctgaggtaggagaatcacttgaatccaggaggcagaggttgcagtgagccgagaccgcgccactgcactccagcctgggtaacagagcaagactccgtctc------aaaagaaaaaaaaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103303170 149 - 106955855 cacatggaggtgcacgcttgcagtcccaggtattcgggagcctgaggtaggagaatcacttgaatccaggaggcagagtttgcagtg----gagatca---------agaccatcctggctaacacggtgaaaccccatctctactaaaaatacagaaaaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55732950 127 +  59248254 agcacagtggctcacgcctgtaatcccagcactttgggaggccgagacgggcggatcac---------gaggtcag---------------gagatcg---------agaccatcctggctaacacagtgaaaccccgtctctact--aaaaatacaaaaaa
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45899603 155 +  49145316 ggcatggtggtgggcacctgcaatcccagctacttgagagtttgaggcaggagaattgcttaaacccgggaggtagaggctgcagtgagccaagactgcaccactgcactccagcctgg-tgacagagcaagactccgtctc------agaagaaaataaaa
i calJac3.chr22             C 0 I 164
e canFam3.chr1              102627765 1798 + 122678785 I
e ponAbe2.chr19              56768098 442 +  60714840 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=7831.000000
s hg38.chr19_GL949751v2_alt    855293 18 +   1002683 TTCgccgggtgtggtggc
s panTro4.chr19              59857039 18 +  63644993 TTTgctgggtgtggtggc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103303319 18 - 106955855 ttagccgggtgtggtggc
i nomLeu3.chr10             C 0 I 39
s macFas5.chr19              55733077 18 +  59248254 ttagctgggcgtggtaac
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e ponAbe2.chr19              56768098 442 +  60714840 I
e calJac3.chr22              45899758 164 +  49145316 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=41853.000000
s hg38.chr19_GL949751v2_alt    855311 269 +   1002683 tcacgcctgtaatcccagcactttgggaggccgaggccgaggcgggtggatcacgaggtcaggagatcaaga-------------------------------ccatcctggctaacacggtgaaaccccgtctt-----------------tactaaaat----------------------------------------------------------------------------------------tacaaaaaactagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcagggcttgcagtgagccgagattgctgcactgcactccagcctggggaacatagcgagactgtctc-
s panTro4.chr19              59857057 269 +  63644993 tcatgcctgtaatcccagcactttgggaggccgaggccgaggcgggtggatcacgaggtcaggagatcaaga-------------------------------ccatcctggctaacacggtgaaaccccgtctc-----------------tactaaaat----------------------------------------------------------------------------------------tacaaaaaactagccgggcgtggtggcaggcgcctgtagtcccagctactagggaggctgaggcaggagaatggcgtgaacccgggaggcagggcttgcagtgagccgagattgcagcactgcactccagcctggggaacatagcgagactgtctc-
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55733095 402 +  59248254 gggcgcctgtagtcccagctactcgggaggctgaggc--aggagaatgg--catgaacctgggaggcggaggttccagcgagccgagattgcgccactgcactccagcctgggcgacaaagtgagactccatgtcaacaacaacaacaaaaatacaaaaaTTAGCgggggccaagacaggcaggtcacctgaggtcaggagttcgaggccagcctgaccaacatggtgaagccccgtctctactaaaaatacaaaaaattagccgggtattatggtgggtacttgtagtcccagctactcgggagactgaagcaggagaatggtgggaacccaggaggtggaggttgcagtgagccgagatcacgccactacactccagcctgggcgacacagcacgactccatct
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e ponAbe2.chr19              56768098 442 +  60714840 I
e calJac3.chr22              45899758 164 +  49145316 I
e nomLeu3.chr10             103303337  39 - 106955855 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=1803.000000
s hg38.chr19_GL949751v2_alt    855580 9 +   1002683 aaaaaaaaa
s panTro4.chr19              59857326 9 +  63644993 aaaaaaaaa
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103303376 8 - 106955855 -aaaaaaga
i nomLeu3.chr10             I 39 I 1
s macFas5.chr19              55733497 6 +  59248254 -aaagaa--
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e ponAbe2.chr19              56768098 442 +  60714840 I
e calJac3.chr22              45899758 164 +  49145316 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=290064.000000
s hg38.chr19_GL949751v2_alt    855589 360 +   1002683 aaaaaaa-GTCaagaagcagaggatcaggaaaaacaactaaggggtactaggcttaatacttgggtgacaaaataatctgtacaacaaactcctatgacacacggttacctgtgtaactaacctgtacttgtaccTACTTTTTGGTTTGTTTTGGTAACAAAACAAACCAAAAAAAA-------------GATAGCTGGggccaggcatggtggctcatgcctgtaatcccagcactttcgaagaccgaggcaggcgcatcaccttaggtcaggagttcgagacaagcctggccaagatggagaaaattccacctctactaaaaacacaagaTTAAgtcattgcactccagcgcctaggtgacagagtgaaact
s panTro4.chr19              59857335 361 +  63644993 aaaaaaaaGTCaagaagcagaggatcaggaaaaacaactaaggggtactaggcttaatacttgggtgacaaaataatctgtacaacaaactcctatgacacacagttacctgtgtaactaacctgtacttgtaccTACTTTTTGGTTTGTTTTGGTAACAAAACAAACCAAAAAAAA-------------GATAGCTGGggccaggcatggtggctcatgcctgtaatcccagcactttcgaagaccgaggcaggcgcatcaccttaggtcaggagttcgagacaagcctagccaagatggagaaaattccacctctactaaaaacacaagaTTAAgtcattgcactccagcacctaggtgacagagtgaaact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56768540 361 +  60714840 AAAAAAA-TTCaagaagcagaggatcaggaaaaacaactaatgggtattaggcttaatacttgggtgacaaaataatctgtaaaacaaactcctatgacacatgtttacctgtgtaactaaccggtacttgtaccTACTTTTTGGTTTGTTTTGGTAACAAAACAAAACAAAAAAAA------------TGATAGCTGGggccaggcatggtggctcatgcctgtaatcccagcacttttgaagaccgaggcaggcgcatcaccttaggtcaggagttcgagaccagcctggccaagatggagaaaattccgcctctactaaaaacacaagattaagtcattgcactccagcgtctaggtgacagagtgaaact
i ponAbe2.chr19             I 442 C 0
s nomLeu3.chr10             103303385 373 - 106955855 aaaaaaa-TTCaagaagcagaggatcaggaaaaacaactaatgggtactaggcctaatacttgggtgacaaaataatctgtacaacaaactcctatgccacacatttacctgtgtaactaacctatacttgtatcTACTTTTTGGTTTGTTTTGGTaacaaaacaaaccaaaaaaaaaaaaaaaaaaaaaGATAGCTGGggccaggcatggtggctcatgcctgtaatcccaacacttttgaagaccgaggcaggcgcatcaccttaggtcaggagttcaagaccagcctggccaagatggagaaaattctgcctctactaaaaatacaagattaagccATTGCACTCCAGCGCCTAGGTGACAGAGTGAAACT
i nomLeu3.chr10             I 1 M 100
s macFas5.chr19              55733503 350 +  59248254 aaaaaCA-CTCaagaagcagaggatcaggataaacaactaatggatactaggctcaatacctgggtgataa---aatctgtacaacaaactcccatgacacacgtttacctgtgtaactaacctgcaattgtacctactTTTTGGTTTGCTTTGGTAACAAACCAA---AAAAAAAA-------------GATAGCT-Gggccaggcatggtggttcatgcctgtaatcccagcacttttgaaggccaaggcgggtgcatcaccttaggtcagaagtttgagaccagcctggccaacatggag-aaattccacctctactaaaaacacaagattgcaccactgcactccagcg--tgggtgacagagtgaaatt
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e calJac3.chr22              45899758 164 +  49145316 I
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=5856.000000
s hg38.chr19_GL949751v2_alt    855949 11 +   1002683 ctgtctcagaa
s panTro4.chr19              59857696 11 +  63644993 ctgtctcaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56768901 11 +  60714840 ctgtctcaaaa
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55733853 11 +  59248254 ctgtctcaaaa
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e calJac3.chr22              45899758 164 +  49145316 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=5487.000000
s hg38.chr19_GL949751v2_alt    855960 17 +   1002683 aaaataaaaa-ataaaaA
s panTro4.chr19              59857707 17 +  63644993 aaaataaaaa-ataaaaA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56768912 18 +  60714840 aaaaaaaaaaGGGGGGGG
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55733864 17 +  59248254 aaaaaaaaaa-aaaaaaa
i macFas5.chr19             C 0 I 27
s calJac3.chr22               3198172 17 -  49145316 AATATTAAAA-ATGTAAA
i calJac3.chr22             n 164 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=-819.000000
s hg38.chr19_GL949751v2_alt    855977 2 +   1002683 AG-
s panTro4.chr19              59857724 2 +  63644993 AG-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56768930 2 +  60714840 AG-
i ponAbe2.chr19             C 0 C 0
s calJac3.chr22               3198189 3 -  49145316 ACT
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3416482 1199 -  51301725 I
e macFas5.chr19              55733881 27 +  59248254 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=90560.000000
s hg38.chr19_GL949751v2_alt    855979 88 +   1002683 Gggccaggtgcagcggctcatgcctataatcccagcactttggaaggccgaggcaggcaaatcacctgaggtcaggagctcgagatca
s panTro4.chr19              59857726 88 +  63644993 Gggccaggtgcagcggctcacgcctataatcccagcactttggaaggccaaggcaggcaaatcacctgaggtcaggagctcgagatca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56768932 88 +  60714840 Gggccaggtgcagcggctcacgcctataatcccagcactttgggaggccgaggcaggcgaatcccctgaggtcaggagctcgagatca
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19               3468668 86 -  59248254 Gggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgagacaggcggaacac--gaggtcaggagatcgagatca
i macFas5.chr19             T 51553 C 0
s papAnu2.chr19               3417681 72 -  51301725 gggccgggtgcggtggctcacgcctgtaatcccaacactttgggaggccgagacggacggatcac--gaggtca--------------
i papAnu2.chr19             I 1199 M 70
s calJac3.chr22               3198192 86 -  49145316 Tggccaggcgcggtggctcaagcctataatcccagcactttgggaggccgaggcgggtggatcac--gaggtcaagagatcgagacca
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=4645.000000
s hg38.chr19_GL949751v2_alt    856067 8 +   1002683 gcctgggc
s panTro4.chr19              59857814 8 +  63644993 gcctgggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769020 8 +  60714840 gcctgggc
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19               3468754 8 -  59248254 tcctggct
i macFas5.chr19             C 0 C 0
s calJac3.chr22               3198278 8 -  49145316 tcctggtc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19               3417753 70 -  51301725 M
e rheMac3.chr19              60593358 870 +  64156825 I

a score=41419.000000
s hg38.chr19_GL949751v2_alt    856075 40 +   1002683 aacacggtgaaaacctgtctgtgctaaaagtac--aaaatta
s panTro4.chr19              59857822 40 +  63644993 aacacggtgaaaacctgtctctgctaaaagtac--aaaatta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769028 40 +  60714840 aacacagtgaaaacctgtctctactaaaaatac--aaaatta
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19               3468762 42 -  59248254 aacacagtgaaaccccgtctctactaaaaacacaaaaaatta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3417824 42 -  51301725 aacacagtgaaaccccgtctttaataaaaacacaaaaaatta
i papAnu2.chr19             M 70 I 1583
s calJac3.chr22               3198286 41 -  49145316 aacatggtgaaaccctgtctctactaaaaatac-aaaaatta
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=65453.000000
s hg38.chr19_GL949751v2_alt    856115 65 +   1002683 gccgggcaaggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgctt
s panTro4.chr19              59857862 65 +  63644993 gccgggcaaggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgctt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769068 65 +  60714840 gcctggcaaggtggcacatgcctgtaatcccagctactcaggaggctgaggcagaagaattgctt
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19               3468804 65 -  59248254 gctgggcatggtggtgggcgcctgtagtcccagctacttgggaggctgaaccaggagaatggcat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47839236 65 +  51301725 gccaggcatggtggttcatgcctgtaatcccagcacttttgaaggccaaggcgggtgcatcacct
i papAnu2.chr19             I 5286 I 61
s calJac3.chr22               3198327 65 -  49145316 gctgggcacggtggtgcgtgcctgtagtcccagctcctcaggaggctgaggcaggagaattgctt
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=18681.000000
s hg38.chr19_GL949751v2_alt    856180 29 +   1002683 gaacctgggaggtggaggatgc-agtgagc
s panTro4.chr19              59857927 29 +  63644993 gaacctgggaggtggaggatgc-agcgagc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769133 29 +  60714840 caacctgggaggcggaggatgc-ggtgagc
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19               3468869 30 -  59248254 gaacccgggaggtggaacttgcaagtgagc
i macFas5.chr19             C 0 C 0
s calJac3.chr22               3198392 29 -  49145316 gaccccaggaggcggaggttgc-ggtgagc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19              47839301 61 +  51301725 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=51543.000000
s hg38.chr19_GL949751v2_alt    856209 54 +   1002683 tgagatcgcgccattgcactccagcc--------tgggcaacaagagtaaatctccgtctca
s panTro4.chr19              59857956 54 +  63644993 tgagatcgcgccattgcactccagcc--------tgggcaacaagagtaaatctccgtctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769162 54 +  60714840 tgagatcgcgccattgcactccagcc--------tgggcaacaagagtaaatctccgtctca
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19               3468899 60 -  59248254 cgagattgtgccactgcactccagcactccagcctgggcgtca--agtgagactccatctca
i macFas5.chr19             C 0 I 67842
s papAnu2.chr19              47839362 53 +  51301725 caagattgcaccactgcactccagcg--------tgggtgaca-gagtgaaattctgtctca
i papAnu2.chr19             I 61 I 2
s calJac3.chr22               3198421 54 -  49145316 cgagatcgagccattgcactccagcc--------tgggtaacaagggtgaaactctgtctca
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt    856263 2 +   1002683 cc
s panTro4.chr19              59858010 2 +  63644993 cc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769216 2 +  60714840 cc
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e calJac3.chr22               3198475 0 -  49145316 C
e nomLeu3.chr10             103303758 100 - 106955855 M
e chlSab2.chr6               47548151 1094 +  50890351 I
e papAnu2.chr19              47839415 2 +  51301725 I
e macFas5.chr19               3468959 67842 -  59248254 I
e rheMac3.chr19              60593358 870 +  64156825 I

a score=32876.000000
s hg38.chr19_GL949751v2_alt    856265 18 +   1002683 aaaaaaaaaaaaaaaaaa
s panTro4.chr19              59858012 18 +  63644993 aaaaaaaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769218 18 +  60714840 aaaaaaaaaaaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103303861 18 - 106955855 AAAaaaaaaaaaaaaaaa
i nomLeu3.chr10             M 100 C 0
s rheMac3.chr19              60594228 18 +  64156825 aaagaaaagaaaagaaga
i rheMac3.chr19             I 870 C 0
s papAnu2.chr19              47839417 18 +  51301725 aaaaaaagaaagaaaaga
i papAnu2.chr19             I 2 I 8
s chlSab2.chr6               47549245 18 +  50890351 aaaagaaagaaaagaaga
i chlSab2.chr6              I 1094 C 0
s calJac3.chr22               3198475 14 -  49145316 ----aaaaaaaaaaaagt
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e macFas5.chr19               3468959 67842 -  59248254 I

a score=7212.000000
s hg38.chr19_GL949751v2_alt    856283 3 +   1002683 aaa
s panTro4.chr19              59858030 3 +  63644993 aaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769236 3 +  60714840 gac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103303879 3 - 106955855 aaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594246 3 +  64156825 aaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55733908 3 +  59248254 aaa
i macFas5.chr19             I 27 C 0
s papAnu2.chr19              47839443 3 +  51301725 aaa
i papAnu2.chr19             I 8 C 0
s chlSab2.chr6               47549263 3 +  50890351 aaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3198489 3 -  49145316 aaa
i calJac3.chr22             C 0 I 39388
e canFam3.chr1              102627765 1798 + 122678785 I

a score=11547.000000
s hg38.chr19_GL949751v2_alt    856286  8 +   1002683 --gaCagctg
s panTro4.chr19              59858033 10 +  63644993 aagaCagctg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103303882  8 - 106955855 --gacagctg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594249  8 +  64156825 --catagctg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55733911  8 +  59248254 --catagctg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47839446  8 +  51301725 --catagctg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549266  8 +  50890351 --gatagctg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e ponAbe2.chr19              56769239  0 +  60714840 C
e calJac3.chr22               3198492 39388 -  49145316 I

a score=100053.000000
s hg38.chr19_GL949751v2_alt    856294 53 +   1002683 gaaaatccccaaatacatggagatgaaacagcacatttccaaatt---------taaaaaac
s panTro4.chr19              59858043 53 +  63644993 gaaaatccccaaatacatggagatgaaacagcacatttccaaatt---------taaaaaac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103303890 53 - 106955855 gaaaatccccaaatacatggagatgaaacagcacatttccaaatT---------TAAAAAAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594257 56 +  64156825 gaaaatccccaaatccatggagatgaaacaacacatttctaaatT------AAAAAAAAAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55733919 55 +  59248254 gaaaatccccaaatccatggagatgaaacaacacatttctaaatT-------TAAAAAAAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47839454 55 +  51301725 gaaaatccccaaatCCATGGAGATgaaacaacacatttctaaatt-------aaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549274 62 +  50890351 gaaaatccccaaatccatggagatgaaacaacacatttctaaatTTaaaaaaaaaaaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45899922 51 +  49145316 gaaaaCCCCCCAAAACATGGAGATGAAACAACACATTTCTATACT-----------TATTTT
i calJac3.chr22             I 164 C 0
e canFam3.chr1              102627765 1798 + 122678785 I
e ponAbe2.chr19              56769239  0 +  60714840 C

a score=814675.000000
s hg38.chr19_GL949751v2_alt    856347 242 +   1002683 aaaagtacaagaagCTTAGTCATCGTTCA-GGGTCTTCCTTGCA-AGATGAGCTTCTACTTACTCCACTTTCTGCAGATGACAGGTGCTACGGGTTACGTGGTCACAAAGAATCCGCACAGAAGAGTCACTCAGGAAGCTTTGTTTCACTTCCAGAAACTTGAGGTTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCTGTCCAGAGGCGAAGAGAGCGAAGATCCTGCCGAGCCCAGTTCGGAA
s panTro4.chr19              59858096 242 +  63644993 aaaagtacaagaagCTTAGTCATGGTTCA-GGGTCTTCCTTGCA-AGATGAGATTCTGCTTACTCCACTTTCTGCAGATGACAGGTGCTACGGGTTACATGGTCACAAAGAATCCGCACAGAAGAGTCGCTCAGGAAGCTTTGTTTCACTTCCAGAAACTTCAGGTTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCGAAGAGAGCGAAGATCCTGCCGAGCCCAGGTCGGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769239 234 +  60714840 ---------agaaGCTTAGTCATGGTTCAGGGGTCTTCCTTGCA-AGATGAGCTTCTGCTTACACCACTTTCTGCAGATGACAGGTGCTACGGGTTATGTGGTCACAAAGAATCCGCACAGAAGAGTCGCTCAGGAAGCTTTGTTTCACTTCCAGAAACTTCAGGTTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCAAAGAGAGCGAAGATCCTGCCGAGCCCAGTTCGGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103303943 242 - 106955855 AAAAGTACAGGAAGCTTAGTCACGGTTCA-GGGTCTTCCTTGAA-AGATGGGCTTCTGCTTACTCCACTTTCTGCAGATGACAGGTGCTACGGGTTACGTGGTCACAAAGAATCCGCACAGAAAAGTCGCTCAGGAAGCTTTGTTTCACTTTCAGAAACTTCAGGTTGCTATTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCGAAGAGAGCGAAGATCCTGCCGCGCCCAGTTCGGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594313 242 +  64156825 AAAAGTGCAAGAAGCTGAGTCATGGTTCA-GGGTCTCCCCTGCA-AGATGAGTTTCTGCTTACTCCACTTTCTGCAGATGGCAGGTGCTACGGGTTATGTGGTCACAAAGAATCCGCACAGAAGAGTCGCTCAGGAAGCTTTGTTTCACTTCTAGAAACTTCAGATTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCGAAGAGAGCGAAGATCCTGCTGAGCCCAGCTGGGAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55733974 242 +  59248254 AAAAGTGCAAGAAGCTGAGTCATGGTTCA-GGGTCTCCCCTGCA-AGATGAGTTTCTGCTTACTCCACTTTCTGCAGATGACAGGTGCTACGGGTTATGTGGTCACAAAGAATCCGCACAGAAGAGTCGCTCAGGAAGCTTTGTTTCACTTCTAGAAACTTCAGATTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCGAAGAGAGCGAAGATCCTGCTGAGCCCAGCTGGGAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47839509 242 +  51301725 aaaagtgcaagaagCTGAGTCATGGTTCA-GGGTCTCCCTTGCA-AGATGAGTTTCTGCTTACTCCACTTTCTGCAGATGACAGGTGCTACGGGTTATGTGGTCACAAAGAATCCGCACAGAAGAGTCGCTCAGGAAGCTTTGTTTCACTTCTAGAAACTTCAGATTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCGAAGAGAGCGAAGATCCTGCTGAGCCCAGCTGGGAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549336 242 +  50890351 aaaaGTGCAAGAAGCTGAGTCATGGTTCA-GGGTCTCCCTTGCA-AGATGAGTTTCTGCTTACTCCACTTTCTGCAGATGACAGGTGCTACGGGTTATGTGGTCACAAAGAATCCGCACAGAAGAGTCACTCAGGAAGCTTTGTTTCACTTCTAGAAACTTCAGATTGCTGTTTGAGCTGAAGAGAGAGCAGAAATCCGTCCAGAGGCGAAGAGAGCGAAGATCCTGCTGAGCCCAGCTGGGAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45899973 242 +  49145316 TAAAGTGCAAGGAGCTTAGTCATGGTTCA-GGATCTTCCCTGCA-AGAGGAGCTTCTCCTTACTCTGCTTTCTGCAGGTGACAGGTGTTACGGACTATGTGGTCACAAAGAACCCGCACGGACGACTCGCTCAGGAAGCTTTGTCTCACTTCCAGAAACTTCAGATTGCTGTTCAAGCTGACGAGAGAGCAGAAATCCTTCCAGACGTGAAGGGACTGAAGATCCTGCCGCGCCCAGTTTGGAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102629563 243 + 122678785 AAAAATGTAAGGAGCTTGGTTATGCCCTA-GGGGTTTTCATCCAGGGGTTAGCTTCTACTTACACCACTTTCTGAAGATTATGGGTAGCAGAGGTTATTTTTTCACAGAGAATTCTCACAGATGAGGCACTAAGGAAGCTCTGACTGATGTCTAGAAATATCAGGTTTTTATTTGAGTCAAACATGGAACAGAAGTCTATCCAGAAAGGAAGCACGTGTTGATCATTCTGGGACCTGTTGGGAA
i canFam3.chr1              I 1798 I 1947

a score=208830.000000
s hg38.chr19_GL949751v2_alt    856589 90 +   1002683 TGGTTAGGTAAGTGCACCTGCAGGAGAACACACGTTCATCTCTTAGGACTAGTACCTGCATGGTGAGATGGGCATCTGCAAACCACAttt
s panTro4.chr19              59858338 90 +  63644993 TGGTTAGGTAAGTGCACCTGCAGGAGAACACACGTTCCTCTCTTAGGACTAGTACCTGCATGGCGAGATGGGCGTCTGcaaaccacattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769473 90 +  60714840 TGGTTAGGTAAGTGCACCTGCAGTAGAACACACGTTCATCTCTTATGACTAGTACCTGCATGGTGAGATGGGTGTCTGcaaaccacattt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304185 90 - 106955855 TGGTCAGGTAAGTGCACCTGCAAGAGAACACATGTTCATCTCTTATGACTAGTACCTGCATGGCGAGATGGGTGTCTGCAAACCACACtt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594555 90 +  64156825 GGGTTACGTAGGTGCACCTGCGGGAGAACACACGTTCGTCTCCTATGCCTAGTACCTGCGTCGGGGGACGGGGGTCTGcaaaccacattt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55734216 90 +  59248254 GCGTTACGTAGGTGCACCTGCGGGAGAACACACGTTCGTCTCCTATGCCTAGTACCTGCGTCGGGGGACGGGGGTCTGCAAACCACAttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47839751 90 +  51301725 GGGTTACGTAGCTGCACCTGCGGGAGGACACACATTCGTCTCCTATGCCTAGTACCTGCGTCGGGGGACGGGTGTCTGCAAACCAcattt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549578 90 +  50890351 GGGTTACGTAGGTGCACCTGCGGGAGAACACACGTTCGTCTCCTATGCCTAGTACCTGCGTCAGGGGACGGGTGTCTGCAAACCACAttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45900215 73 +  49145316 GGGTGAAGTAACTGTCCCTGCGGGAGCGCACA-GTT---------------GTCACCGCAT-GTGGGATGGGTGACTGCAAACCACtttt
i calJac3.chr22             C 0 I 2278
e canFam3.chr1              102629806 1947 + 122678785 I

a score=264314.000000
s hg38.chr19_GL949751v2_alt    856679 110 +   1002683 caatggcaaaaaccacaattacttttgcaccaacctaaAACAGTGTCTATAGTAAACAATATTGCATCACATGCTTTGCTACCAGTATAGATCTTAAGTTTTACAAAAAA
s panTro4.chr19              59858428 110 +  63644993 caatggcaaaaaccacaattacttttgcaccaacctaaAACAGTGTCTATAGTAAACAATATTGCATCACATACTTTGCTACCAGTATAGATCTTAAGTTTTACAAAAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769563 110 +  60714840 caacggcaaaaaccacaattacttttgcaccagcctaaAACAGTGTCGATAGTAAACAATATTGCATCACATACTTTGCTACCAGTATAGATCTTAAGTTTTACAAAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304275 108 - 106955855 caatggcaaaaaccacaattacttttgcaccaacctaaA--Agtgtctatagtaaacaatattgcatcacatactttgctacgagtatagatcttaagttttacaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594645 110 +  64156825 cagtggcaaaaaccacaattacttttgcaccaacctaaAACAGTGTCTATAGTAAGCAATATTGAATCACATACTTTGCTAGGAGTATAGATCTTAAGTTTTACAAAAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55734306 110 +  59248254 caatggcaaaaaccacaattacttttgcaccaacctaaAACAGTGTCTATAGTAAGCAATATTGAATCACATACTGTGCTAGGAGTATAGATCTTAAGTTTTACAAAAAA
i macFas5.chr19             C 0 I 810
s papAnu2.chr19              47839841 110 +  51301725 caatggcaaaaaccacaattacttttgcaccaacctaaaacAGTGTCTATAGTAAGCAATATTGAATCACATACTTTGCTAGGAGTATAGATCTTAAGTtttacaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549668 110 +  50890351 caatggcaaaaaccacaattacttttgcaccaacctaaAACAGTGTCTATAGTAAACAATATGGAATCACATACTTTGCTAGGAGTATAGATCTTAAGTTTTACAAAAAA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102629806 1947 + 122678785 I
e calJac3.chr22              45900288 2278 +  49145316 I

a score=1179.000000
s hg38.chr19_GL949751v2_alt    856789 1 +   1002683 A
s panTro4.chr19              59858538 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769673 1 +  60714840 A
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304383 1 - 106955855 a
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60594755 1 +  64156825 A
i rheMac3.chr19             C 0 I 1213
s papAnu2.chr19              47839951 1 +  51301725 g
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549778 1 +  50890351 A
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102629806 1947 + 122678785 I
e calJac3.chr22              45900288 2278 +  49145316 I
e macFas5.chr19              55734416 810 +  59248254 I

a score=8948.000000
s hg38.chr19_GL949751v2_alt    856790 8 +   1002683 ATAAAATA
s panTro4.chr19              59858539 7 +  63644993 -TAAAATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769674 7 +  60714840 -TAAGATA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304384 7 - 106955855 -tAAAATA
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47839952 8 +  51301725 ataaaata
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47549779 8 +  50890351 ATAAAATA
i chlSab2.chr6              C 0 I 732
e canFam3.chr1              102629806 1947 + 122678785 I
e calJac3.chr22              45900288 2278 +  49145316 I
e macFas5.chr19              55734416 810 +  59248254 I
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=4422.000000
s hg38.chr19_GL949751v2_alt    856798 8 +   1002683 ATAGATAA
s panTro4.chr19              59858546 8 +  63644993 ATAGATAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769681 8 +  60714840 ATAGATAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304391 8 - 106955855 ATAGATAA
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1              102629806 1947 + 122678785 I
e calJac3.chr22              45900288 2278 +  49145316 I
e chlSab2.chr6               47549787 732 +  50890351 I
e papAnu2.chr19              47839960 0 +  51301725 C
e macFas5.chr19              55734416 810 +  59248254 I
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=21077.000000
s hg38.chr19_GL949751v2_alt    856806 20 +   1002683 ggctgagtgaggtggctcat
s panTro4.chr19              59858554 20 +  63644993 GCctgagtgaggtggctcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769689 20 +  60714840 ggctgagtgaggtggctcat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304399 20 - 106955855 ggctgagtgaggtggctcat
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55735226 20 +  59248254 ggccgggcgcggtggctcac
i macFas5.chr19             I 810 C 0
s papAnu2.chr19              47839960 19 +  51301725 -gccaggtgtggtggctcac
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              102629806 1947 + 122678785 I
e calJac3.chr22              45900288 2278 +  49145316 I
e chlSab2.chr6               47549787 732 +  50890351 I
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=280811.000000
s hg38.chr19_GL949751v2_alt    856826 245 +   1002683 gcc-----tgtaatcccaacactttgctaggccaaagtgggaagatcacttgagcccaggagtttaagac-caacttgggctagaaactgaga-cccccatctctac-aaaaaaat--aaaataattaa-ccgggcaaggtggtgcacgcccatagtcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatcgcgccactgcactccagcctggggga
s panTro4.chr19              59858574 245 +  63644993 gcc-----tgtaatcccaacactttgctaggccaaagtgggaagatctcttgagcccaggagtttaagac-cagcctgggctagaaactgaga-cccccatctctcc-aaaaaaat--aaaataattaa-ctgggcaaggtggtgcacgcccgtagtcccagctactggggaggctgaggcaggagaatcacttgaacccgggaggcggagcttgcagtgagccaagatcacgccactgcactccagcctggggga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769709 244 +  60714840 gcc-----tgtaatcccaacactttgctaggccaaagtgggaagatcacttgagcccaggagtttaagac-cagcctggacaagaaactgaga-cccccatctctac--aaaacat--aaaataattaa-ccgggcaaggtggtgcacgcccgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggagcttgcagtgagccaagatcatgccactgcactccagactgggcga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304419 245 - 106955855 gcc-----tgtaatcccaacactttgctaggccaaagtgggaagatcacttgagcccaggagtttaagac-cagcctgggaaagaaactgagaccccccatctccac--agaaaat--aaaataattaa-ccgggcaacatggtgcacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcga
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55735246 233 +  59248254 gcc-----tgtaatcccagcactttgggaggccgaggcgggcggatcac--aaggtcaggagatcgagac-------------cacggtgaaa-cc-ccgtctctactaaaaatacaaaaaaaaattag-ccgggcgcggttgtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47839979 215 +  51301725 accctccttggcctctcagcactttgggaggccgaggcgggcagatcac--aaggtcaggagattgagactcatcctggctaacacagtgaaa-cctccgtctctactaaaaatac--aagaaaattagtctgggcgtggtgacgggcgtctgtagtcccagctactcgcgag----------------------------------agagcttgcagtgagcagagat-gcg-cactgcactctagcctgggtga
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45902566 228 +  49145316 gcc-----tgtaatcccagcacttt------cagaagcaggga-----cctgaggtcaggag----agac-cagcctggccaacgtgatgaaa-ccccc-tctctat--taataat--acaaaaattag-ctgggcgcggtggctcatgcctgtaatcccagctactaatgaggccggggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcatgccattgcacttcagcctgggtga
i calJac3.chr22             I 2278 C 0
e canFam3.chr1              102629806 1947 + 122678785 I
e chlSab2.chr6               47549787 732 +  50890351 I
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=28850.000000
s hg38.chr19_GL949751v2_alt    857071 19 +   1002683 c-agagcgagactccgtctc
s panTro4.chr19              59858819 19 +  63644993 c-agagcgagactccgtctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56769953 19 +  60714840 c-agagcgagactccgtctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304664 19 - 106955855 c-agagcgagactccgtctc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55735479 19 +  59248254 c-agagcgagactccgtctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47840194 18 +  51301725 c-agagc-agactctgtctc
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45902794 18 +  49145316 ctagagcaaaact--gtctc
i calJac3.chr22             C 0 I 7
s canFam3.chr1              102631753 19 + 122678785 C-AAAACAAGGTCTGGTTCC
i canFam3.chr1              I 1947 C 0
e chlSab2.chr6               47549787 732 +  50890351 I
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=23841.000000
s hg38.chr19_GL949751v2_alt    857090 11 +   1002683 aaaaataaaaa
s panTro4.chr19              59858838 11 +  63644993 aaaaaaaaaaa
i panTro4.chr19             C 0 I 2
s ponAbe2.chr19              56769972 11 +  60714840 agaaaaaaaaa
i ponAbe2.chr19             C 0 I 5
s nomLeu3.chr10             103304683 11 - 106955855 aaaaaaaaaaa
i nomLeu3.chr10             C 0 I 5
s macFas5.chr19              55735498 11 +  59248254 aaaaaaaataa
i macFas5.chr19             C 0 I 11
s papAnu2.chr19              47840212 11 +  51301725 aaaaaaaaaaa
i papAnu2.chr19             C 0 M 1271
s chlSab2.chr6               47550519 11 +  50890351 aaaaaaaaaaa
i chlSab2.chr6              I 732 C 0
s calJac3.chr22              45902819 11 +  49145316 aaaaaaaaaaa
i calJac3.chr22             I 7 I 3
s canFam3.chr1              102631772  7 + 122678785 --AAAGAAA--
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=348909.000000
s hg38.chr19_GL949751v2_alt    857101 211 +   1002683 GCCCCAATTCCTAATTGCCAAGTCGTG-TCTCCACGTTGAAC-ATGAAGCT---GGAAAGAAGTCCAGCCAGAGGGAAATTCTGACAGTAAGCGACAGGGCAAAGGAGACG--CTGGCCTCTTCCTAGTGGAGCG---TGG------------------GATGGGAAAACA-----------------------GTTCTTACCTTTCAAATTCAATGTCCAGTTCAAAATCCATGTAATTCTCCAGGAACACCCCCTTTGCT
s panTro4.chr19              59858851 211 +  63644993 GCCCCAATTCCTAATTGCCAAGTCGTG-TCTCCACGTTGAAC-GTGAAGCT---GGAAAGAAGTCCAGCCAGAGGGAAATTCTGACAGTAAGTGACAGGGCAAAGGAGACG--CTGGCCTCTTCCTAGTGGAGCG---TGG------------------GATGGGAAAACA-----------------------GTTCTTACCTTTCAAATTCAATGTCCAGTTCAAAATCCATGTAATTCTCCAGGAACACCCCCTTTGCT
i panTro4.chr19             I 2 C 0
s ponAbe2.chr19              56769988 209 +  60714840 GCCCCAATTCCTAATTGCCAAGTCGTG-TCTCCACGTTGAAC-GTGAAGCT---GGAAAGAAGTCCAGCCAGAGGGAAAT--TGACAGTAAGCGACAGGGCAAAGGAGACG--CAGGCCTCTTCCTAGTGGAGCG---TGG------------------GATGGGAAAACA-----------------------GTTCTTACCTCTCAAATTCAATGTCCAGTTCAGAATCCATGTAATTCTCCAGGAACACCCCCTTTGCT
i ponAbe2.chr19             I 5 C 0
s nomLeu3.chr10             103304699 211 - 106955855 aCCCCAATTCCTAATTGCCAAGTCGTG-TCTCCGCGTTGAAC-GTGAAGCT---GGAAGGAAGTCCAGCCAGAGGGAAATTCTGACCGTTAGCGACAGGGCACAGGAGACG--CTGGCCTCTTCCTAGTGGAGCG---TGG------------------AATGGGAAAGCA-----------------------GTTCTTACCTCTCAAATTCAATATCCGGTTCAAAACCCACGTAATTCTCCAGGAACACCCCCTTTGCT
i nomLeu3.chr10             I 5 C 0
s macFas5.chr19              55735520 181 +  59248254 -------------------aaat-------------taaaaaaataaaaaa---ataaGAAAGTCCAGCCAGAGGGAAATTGTGACCGTCAGCCACAGGGCACAGGAGACG--CCGGCCTCTTCCTAGTGGAGCG---TGG------------------GTTGGGAAAACA-----------------------GTCCTTACCTCTCAAATTCAATGTCTGCTTCGAAATCCACGTAATTCTCCAGGAACACCCCCTTTGCT
i macFas5.chr19             I 11 C 0
s papAnu2.chr19               3419449 180 -  51301725 ------------------------------------------------------aaaaaagagtccaaaaAGAGGGAATTCCTGACCCTAAGCCACAGCACATAGGAGGCT--CTGGCCTCTTCCTAAGGGCGCA---TGGGATGAGGCTAAACGACCAGTCGAGTGAAAG-----------------------GTTCCTACCTCTCAGCCTCAGCATTGGATTCAGACGCAGCGACATTCTCCGGGAGCGTCTCCTTTCTT
i papAnu2.chr19             I 1583 I 3
s chlSab2.chr6               47550530 205 +  50890351 GCCCCAATTCCTAATTGTCAAATCGCG-TCTCCGTGTTGAACTGTGAAGCT---GGAAGAAAGTCCAGCCAGAGGGAAATTCTGACCGTCAGCCAC-------AGGAGACG--CTGGCCTCTTCCTAGTGGAGCG---TGG------------------GATGGGAAAACA-----------------------GTTCTTACCTCTCAAATTCAATGTCTGGTTCGATATCCACGTAATTCTCCAGGAACACCCCCTTTGCT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45902833 207 +  49145316 aaCCCAATTCCTAATTGACAAATCGTA-TCTGTGTGTTGAAC-ATGAAGC-------AGGAAGACCAGCCAGAGGGAAATTCTGACCTTAAGCTACAAGGCACAGGAGACA--CTGGCCTCCTCCTGGTGGAACG---TGG------------------GATGGGAAAGTC-----------------------GTTCTTACCTCTCTAACTCCAAGTCCGGTTCAAGGTCCACGTAATTCTCCAGGAACACCCCCTTTGCT
i calJac3.chr22             I 3 C 0
s canFam3.chr1              102631779 243 + 122678785 GATCCCATCCCTAATCCGAACATTGTGTTCCCCACCTTGAAG-AGCAAGCTAGCAGAAGAAATTCTGGCAAGAAGAAAATTCTGATCCTATGCCAAGGGAGCGGGGGGACACTCTGCCCTGTTTCTAACGCAGGGGATGAG------------------GCTGAAAAAGCAAGCTAACAGAGTGAACAGTGAGGATTCTTACCGGTCAGCCTGGTCCTCTGATTCTGACACAGCATCATTCTCCAGAAACATCCCCTTTTCT
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60594756 1213 +  64156825 I

a score=125033.000000
s hg38.chr19_GL949751v2_alt    857312 38 +   1002683 ACCTGCAGTGAGAGTTTCTGCAAGTCTTGACAATGCTT
s panTro4.chr19              59859062 38 +  63644993 ACCTGCAGTGAGAGTTTCTGCAAGTCTTGACAATGCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56770197 38 +  60714840 ACCTGCAGTGAGAGTTTCTGCAAGTCTTGACAATGCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304910 38 - 106955855 ACCTGCAGTGAGAGTTTCTGCAAGTCTTGACAATGCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60595969 38 +  64156825 ACCTGCAGTGACATTTTCTGCAAGTTTTGACAGTGCTT
i rheMac3.chr19             I 1213 I 49
s macFas5.chr19              55735701 38 +  59248254 ATCTGCAGTGAGACTTTCTCCAAGTCTCGACAATGCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3419632 38 -  51301725 ACCTGCAGTGACATTTTCTCCAAGTTTGGACAGTGCTT
i papAnu2.chr19             I 3 C 0
s chlSab2.chr6               47550735 38 +  50890351 ACCTGCAGTGAGACTTTCTCCAAGTCTGGACACTGCTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45903040 38 +  49145316 ACCTGCAGCGAGAGTTTCTCCAAGTCTGGACAGTGCTT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102632022 38 + 122678785 ATCTGCAGCCACATTTTCTGCAAGCTTTCACAATGCTT
i canFam3.chr1              C 0 C 0

a score=88309.000000
s hg38.chr19_GL949751v2_alt    857350 52 +   1002683 CAGGCTGAAGGAACAATGCATCACTTCAGAAGTATTTGTCAGGTGAATAGAA
s panTro4.chr19              59859100 52 +  63644993 CAGGCTGAAGGAACAATGCCTCACTTCAGAAGTATTTGTCAGGTGAATAGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56770235 52 +  60714840 CAGGCTGAAGGAACAATGCATCACTTCAGAAGTATTTGTCAAGTGAATAGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103304948 52 - 106955855 CAGGCTGAAGGAACACTGCATCATTTCAGAAATATTTGTCAAGTGAACAGAA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55735739 52 +  59248254 CAGGCTGAAGGAACAGTGCATCATTTCAGAAGTATTTGTCAAGTTAATAGAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3419670 49 -  51301725 GAAGCAGAATGATGACGGCGCAATGTCTACTGCATTT---AAGTGCAGGGAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47550773 52 +  50890351 CAGGCTGAAGGAACAGTGCATGATTTCAGAAGTATTTGCCAACTTAATAGAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45903078 52 +  49145316 CAGGCTGAAATAACACTGCACCATCTCAGACTTACTTGTCAAGTGAACAGAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102632060 52 + 122678785 GAGGCAAAAGGATGCATGCATGATGTCTGAGGTATCTTTGAAAACCAGGGAC
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60596007 49 +  64156825 I

a score=209419.000000
s hg38.chr19_GL949751v2_alt    857402 64 +   1002683 ATTTCCTTGAACGGGGCCACCACCACCTTCGCCAGCTCCTCCTCCTGAGACTCATACAGGCAGC
s panTro4.chr19              59859152 64 +  63644993 ATTTCCTTCAACGGGGCCACCACCACCTTCGCCAGCTCCTCCTCCTGAGACTCATACAGGCAGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56770287 64 +  60714840 ATTTCCTTGAAAGGGGCCACCACCACCTTCGCCAGCTCCTCCTCCTGAGACTCATACAGGCAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103305000 64 - 106955855 ATTTCCTTGAACGGGGCCACTACGACCTTCGCCAGCTCCTCCTCCTGAGACTCATACAGGCAGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60596056 64 +  64156825 ATTTCTTTGAACTGAGCCATCACCTCCTTCACCAGCTCGTCCTCCTGAGACTCGTACAGACAGC
i rheMac3.chr19             I 49 I 55
s macFas5.chr19              55735791 64 +  59248254 ATTTTCTTGAGCGGGGCCACCACCACCTTCGCCAGCTCCTCCTCCTGAGACTCGTACAGGCAGC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3419719 64 -  51301725 ATTTCTTTGAACTGAGCCATCACCTCCTTCACCAGCTCGTCCTCCTGAGACTCGTACAGACAGC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47550825 64 +  50890351 ATTTTCTTGAGCGGGGCCACCACCACCTTCGCCAGCTCCTCCTCCTGAGACTCGTACAGGCAGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45903130 64 +  49145316 ATTTCCCTGAACGGGGCCATCACCGCCTTCGTCAGCTCCCCCTCCTGAGACTCATACAGGCAGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102632112 64 + 122678785 ACTTCTGTCACCTGGACCATGGCTTCCTTCACAAGCTGCTCCTCCTGGGATTCATAGAGACAGT
i canFam3.chr1              C 0 C 0

a score=95886.000000
s hg38.chr19_GL949751v2_alt    857466 58 +   1002683 CCAAGACCTCCTTCAGGTCGGTCAC---GGATAAGGGCTTATTTGCATGAAGATGTGCTTT
s panTro4.chr19              59859216 58 +  63644993 CCAAGACCTCCCTCAGGTCGGTCAC---GGATAAGGACTTATTTGCATGAAGATGTGCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56770351 58 +  60714840 CCAAGACTTCCTTCAGGTCGGTCAT---GGATAAGGGCTTATTTGCATGAAGATGTGCTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103305064 58 - 106955855 ACAAGACCTCCTTCAGGTCGGTCAT---GGATATGGACTTATTTGCATGAAGATGTGCTTT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55735855 58 +  59248254 ACAAGACCTCCTTCAGGTCTGTCAT---GGATAAGGGCTTATCGGCATGAAGACTGGCTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3419783 55 -  51301725 AGAGGAGCTCCTTCAGGTCCGCCAC---CGTGGAATGTCCATTCTTACGACTTATGTC---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47550889 58 +  50890351 ACAAGACCTCCTTCAGGTCTGTCAT---GGATAAGGGCTTATTGGCATGAAGATTGGCTTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45903194 58 +  49145316 ACAAGAGCTCCCTCAGGCCTGCCAT---CGACGACGGCTTCTTTACGTGAAGATTCGCTCT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102632176 61 + 122678785 GCAAAGTCTCCTTCGTGTCTGTCACCGAGGAGAAGGGTCTGTTCTCAGGAGACCCTACCCT
i canFam3.chr1              C 0 C 0
e rheMac3.chr19              60596120 55 +  64156825 I

a score=175702.000000
s hg38.chr19_GL949751v2_alt    857524 52 +   1002683 GCATTGCAGCAATTCCTGTTTGATGTCCGGTGACATCCGGCAGCCAAAAGTG
s panTro4.chr19              59859274 52 +  63644993 GCACCGCAGCAATTCCTGTTTGATGTCCGGTGACATCCGGCAGCCAAAAGTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56770409 52 +  60714840 GCATCGCAGTAATTCCTGTTTGATGTCTGGTGATATCCGGCAGCCAAAAGCG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103305122 52 - 106955855 GCATCGCAGCAACTCCTGTTTGATGTCTGGTGACATCTGGCAGCCAAAAGTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60596175 52 +  64156825 GCATCGCAGCAATTCCTGTTTGATCTCTGGTGACATCCGCCAGCCAAAGGTG
i rheMac3.chr19             I 55 C 0
s macFas5.chr19              55735913 52 +  59248254 GCATCGCAGCAATTCCTGTTTGATCTCCGGTGACATCTGGCAGCCAAAAGTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3419838 52 -  51301725 GCATCGCAGCAATTCCTGTTTGATCTCTGGTGACATCCGGCAGCCAAAGGTG
i papAnu2.chr19             C 0 I 48039
s chlSab2.chr6               47550947 52 +  50890351 GCATCGCAGTAATTCCTGTTTGATCTCCGGTGACATCCGGCAGCCAAAGGTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45903252 52 +  49145316 GCACCGCAGCAGTTCCTGTTTGATCTCCCGTGACATCACGCAGCCGAAAGTG
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102632237 52 + 122678785 GCATTCCAGCAGTTCCTGCTTGACCTTGGTGGACACCAGGCAGCCAAAAGTC
i canFam3.chr1              C 0 C 0

a score=3698472.000000
s hg38.chr19_GL949751v2_alt    857576 1051 +   1002683 GCCTCCAACTCCTTGGCTCTCTTCTCGTTAGCGAGGCCGAATAAGAAGTGTCCTACTTGAATCAGGTCGGGGTTCTTGAGTCTTTCTTCTCCGGAAAGCAGCTTCTGTACGTCCCCGATGTCCCAGGCGTGG-CCGTCCCT--------GTCCTCCCCCTCCTCCTTCTCCAGGGCGTAGAACAGGGCAGTGAGAAACTGCTGGAAGCTGAGGTGGATGAAGGAGTAGCAGCCTTTGGAGACTCTGTCCTGGCGGAGGATGTCTCCGTCCAGGAACAGACGGAGGTCGGACTCCTGCACCCCGAGCCTTTCCAGGTCCTCTCGGTGGAACACGGACATCTGCGCCCACAGGCCCTGCGCGGCCAGGAGGCTCAGCGTCCGCAGCGCGCCCCGCAGCTGTG------------CGCCCTGCGGG------AACCGGCTGCAGAGGAAACGCAGGAACAGCCCCGTGCGGGTGAGGCAGGTGGGGACCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACAATCCAGCACACCGCGGGGGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATTAGCTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAAGCCCTCCACCCTTACGTAGATCGGCTGCTGCGCCAGGAGCTGGAGGTCCCTCAGTGCCCTGGGCCGCGTGGTGACCAGCAAGGCTGCCCTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACGGGCACCGGCTTCTTCTTCTCCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCATCAAGGCCATCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCAGGGGCCCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAACGCGTATCTGAGCGTCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGCG
s panTro4.chr19              59859326 1051 +  63644993 GCCTCCAACTCCTTGGCTCTCTTCTCGTTAGCGAGGCCGAATAAGAAGTGTCCTACTTGAATCAGGTCGGGGTTCTTGAGTCTTTCTTCTCCGGAAAGCAGCTTCTGTACGTCCCCAATGTCCGAGGTGTGG-CCGTCCCT--------GTCCTCCTCCTCCTCCTTCTCCAGGGCGTAGAACAGCGCAGCGAAAAACTGCTGGAAGCTGAGGTGGATGAAGGAGTAGCAGCCTTTGGAGACTCTGTCCTGGCGGAGGATGTCTCCGTCCAGGAACAGACGGAGGTCGGACTCCTGCACCCCGAGCCTTTCCAGGTCCTCTCGGTGGAACACGGACATCTGCGCCCACAGGCCCTGCGCGGCCAGGAGGCTCAGCGTCCGCAGCGCGCCCCGCAGCTGTG------------CGCCCTGCGGG------AACCGGCTGCAGAGGAAGCGCAGGAACAGCCCCGTGCGGGTGAGGCAGGTGGGGACCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCACACCGCGGGGGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATTAGCTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAAGCCCTCCACCCTTACGTAGATCGGCTGCTGCGCCAGGAGCTGGAGGTCCCTCAGTGCCCTGGGCCGCGTGGTGACCAGCAGGGCTGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACGGGCACCGGCTTCTTCTTCTCCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCATCAAGGCCATCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCAGGGGCCCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAACGCGTATCTGACCGTCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGCG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56770461 1048 +  60714840 GCCTCCAACTCGTTGGCTCTCTTCTCGTTAGCGAGGCCGAATAAGAAGTGTCCTACTTGGATCAGGTCGGGGTTCCTGACTCTTTCTTCTCCGGAAAGCAGCTTCTGTATGTCCCCAATGTCCCAGGCGTGG-CCGTCCCT--------GTCCT---CCTCCTCCTTCTCCAGGGCGTAGAACAGCCCAGCGAAAAACTGCTGGACGCTGAGGTGGATGAAGGAGTAGCAGCCTTTGGAGACTCTGTCCTGGCGAAGGATGTCTCCGTCCAGGAACAGACGGAGGTCGGACTCCTGCACCCCGAGCCTTTCCAGGTCCTCTTGGTGGAACACGGACATCTGCGCCCACAGGCCCTGCGCGGCCAGAAAGCTCAGCGTCCGCAGCGCGCCCTGCAGCTGTG------------CGCCCTGTGGG------AACCGGCTGCAGAGGAAGCGCAAGAACAGCCCCGTGCGGGTGAGGCAGGTGGGGACCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCACACCGCGGGGGCCGACCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATCAGCTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAAGCCCTCCACCCTTATGTAGATTGGCTGCTGCGCCAGGAGCTGGAGGTCCCTCAGTGCCCTGGGCCGCGTGGTGACCAGCAGGGCGGCCTTGGGTAACATATACCTGTTCAGCAAACTCCCCAGGAGGACGGGCACCGGCTTCTTCTTCTCCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCTTCAAGGCCGTCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAACTCAGGCCAGTCTTTGGAGATTAGCTCTGCAAAACTGCACGGGCCCATGTGGCTGAGCTCCTTGCAGCTGAGGTAGAACGCGTATCTGACCGTCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103305174 1051 - 106955855 GCCTCCAGCTCCTTGGCTCTCTTCTCATTAGCGAGGCCGAATAAGAAGTGTCCTACTTGAATCAGGTCGGGGTCCTTGAGTCTTTCTTCTCCGGAAAGCAGCTTCTGCACGTCCCCAATGTCCCAGGCGTGG-CCGTCCCT--------GTCCTCTTCCTCCTCCTTCTCCAGGGCGTAGAACAGCGCAGCGAAAAACTGCTGGAAGCTGAGGTGGATGAAGGAGTAGCAGCCTTTGGAGTCTCTGTCCTGGCGGAGGATGTGTCCGTCCAGGAACGGGCGGAGGTCGGACTCCTGCACCCCGAGCCTTTCCAGGTCCTCTCGGTGGAGCACAGACATCTGCGCCCACAGCCCCTGCGCGGCCAGGAGGCTCAGCTTCCGCAGCGCGCCCCGCAGCTGTC------------CGCCCTGCGGG------AACTGGCTGCAGAGGAAGCGCAGGAACAGCCCCGTGCGGGTGAGGCAAGTGGGGGCCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCACACCGCCGGGGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATCAGCTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAAGCCCTCCACCCTTATGTAGATTGGCTGCTGCGCCAGGAGCTGTAGATCCCTCAGTACCCTGGGCCGCGTGGTGACCAGCAGGGCGGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACCGGCACCGGCTTCTTCTTCTCCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGAACTTTCAGCTCATCAAGGCCATCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCAGGGGCCCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAACGCGTATCTGACCGTCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGCG
i nomLeu3.chr10             C 0 M 207
s rheMac3.chr19              60596227 1051 +  64156825 GCCTCCAACTCCTTGACTCTCTTCTCATTAGCCAGGCCGAACAAGAAGCGTCCTGCCTGGATCAGGTCGGGGTTCTTGAGTCTTTCTTCTTCGGAAAGCAGCTTCTGCACGTCCCCAATGTCCCAGGCATGG-CCGTCCCT--------GtcctcctcctcctcctcctccAGGGCGTAGAACAGCGCAGTGAGAAACTGCTGGAAGCTGAGGTGGATGAAGGAGTAGCAGCCTTTGGCGACTCCGTCCTGGCGGAGGATGTCTCTGTCCAGGAACAGGCGGAGGTCGGACTCCTGCACCCCAGCGCTTTCCAGGTCCTCTCCGTGGAGCACGGACATCTGCGCCCACAAACTCTGCGCGGCCAGGAGGCTCAGCGCCCGCAGCGCGCCCCGGAGCTGTG------------CGCCCTGCGGG------AACTGGCTGCAGAGGAAGCGCAGGAACAGCCCCGTGCTGGTGAGGCAGGTGGGGGCCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCACACCGCGGGCGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATCAGCTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAACCCCTCCACCCTTATGTAGATGGGCTGCTGCACCAGGAGCTGGAGGTCCCTCAGGGCCCTGGGCCGCGTGGTGACCAGCAGGGTTGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACCGGCACCGGCTTCTGCTGCTCCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCATCAAGGCCGTCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCACGGGCCCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAAAGCGTATCTGACAGTCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55735965 1051 +  59248254 GCCTCCAACTCCTTGACTCTCTTCTCATTAGCCAGGCCGAACAAGAAGTGCCCTACTTGGATCAGGTCGGGGTTCTTGAGTCTTTCTTCTTCGGAAAGCAGCTTCTGCACGTCCCCAATGTCCCAGGCATGA-CCGTCCCT--------GtcctcctcctcctcctcctccAGGGCGTAGAACAGCGCAGTGAGAAACTGCTGGAAGCTGAGGTGGATGAAGGAGTAGCAGCCTTTGGCGACTCCGTCCTGGCGGAGGATGTTTCTGTCCAGGAACAGGCGGAGGTCGGACTCCTGCACCCCAGCGCTTTCCAGGTCCTCTCCGTGGAGCACGGACATCTGCGCCCACAAACCCTGCGCGGCCAGGAGGCTCAGCGCCCGCAGCGCGCCCCGGAGCTGTG------------CGCCCTGCGGG------AACTGGCTGCAGAGGAAGCGCAGGAACAGCCCCGTGCTGGTGAGGCAGGTGGGGGCCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCACACCGCGGGCGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATCAGCTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAACCCCTCCACCCTTATGTAGATGGGCTGCTGCACCAGGAGCTGGAGGTCCCTCAGGGCCCTGGGCCGCGTGGTGACCAGCAGGGTTGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACCGGCACCGGCTTCTGCTGCTCCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCATCAAGGCCGTCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCACGGGCCCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAAAGCGTATCTGGCAGTCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47841511 1048 +  51301725 GCCTCCAACTCCTTGACTCTC-TCTCATTAG-CAGGCCGAATAAGAAGTGCCCTACTTGGATCAGGTCGGGGTTCTTGAGTCTTTCTTCTTCGGAAAGCAGCTTCTGCACGTCCCCAATGTCCCAGGCATGGCCCgtccct--------gtcctcctcctcct--ttctgcaGGGCGTAGAACAGCGCAGTGAGAAACtgctggaagctgaggtggatgaaGGAGTAGCAGCCTTTGGAGACTCTGTCCTGGCGGAGGATGTCTCTGTCCAGGAACAGGCGGAGGTCGGACTCCTGCACCCCGGCCCTTTCCAGGTCCTCTCCGTGGAGCACGGACATCTGCGCCCACAAACCCTGCGCGGCCAGGAGGCTCAGCGCCCGCAGCGCGCCCCAGAGCTGTG------------CGCCCTGCGGG------AACTGGCTGCAGAGGAAGCGCAGGAACAGCCCCGTGCTGGTGAGGCAGGTGGGGGCCGGGTCCTCCCCCTTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCACACCGCGGGTGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATCAACTCAAAGGCACGCATGGCTTGGTCCTCGTCTCCGAAGTGTCTCAGGAAATAGGCCCTCCTGTCCGACTCCAGGAACCCCTCCACCCTTATGTAGGTGGGCTGCTGCACCAGGAGCTGGAGGTCCCTCAGGGCCCTGGGCCGCGTGGTGACCAGCAGGGTTGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACCGGCACCGGCTTCTGCTGCGTCCAGTCCCCGCAGATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCATCGAGGCCGTCGACCACGAACAGGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCACGGGCCCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAAAGCGTATCTGACCATCGGGCTGAGGTTGCAGTCTGTCCAGTCCAGCATACACTTTTTGGCCAGTG
i papAnu2.chr19             M 1271 C 0
s chlSab2.chr6               47550999 1051 +  50890351 GCCTCCAACTCCTTCACTCTCTTCTCATTAGCCAGGCCGAATAAGAAGTGCCCTACTTGGATCAGGTCGGGGTTCTTGAGTCTTTCTTCTTCGGAAAGCAGCTTCTGCACGTCCCCAATGTCCCAGGCATGG-CCGTCCCT--------GtcctcctcctcctccttctccAGGGCGTAGAACAGCGCAGTGAGAAACTGCTGGAAGCTGAGGTGGATGAAGGAGTAGCAGCTTTTGGAGACTCTGTCCTGGTGGAGGATGTCTCTGTCCAGGAACGGACGGAGGTCGGACTCCTGCACCCCAGCGCTTTCCAGGTCCTCTCTGTGGAGCACGGACATCTGCGCCCACAAACTCTGCGCGGCCAGGAGGCTCAGCGCCCGCAGAGCGCCCCGGAGCTGTG------------CGCCCTGCGGG------AACTGGCTGCAGAGGAAACGCAGGAACAGCTCCGTGCTGGTGAGGCAGGTGGGGGCCGGGTCCTCCCCATTCTCCATCTGCAGCTTCAGAGTCGTGCACACGATCCAGCATACCGCGGGCGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTCCTCATCAACTCAAAGGCACGCATGGCTTGGTCCTCCTCTCCAAAGTGTCTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAACCCTTCCACCCTTATGTAGATGGGCTGCTGCACCAGGAGCTGGAGGTCCCTCAGGGCCCTGGGCCGCGTGGTGACCAGCAGGGTTGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAAGAGGACCGGCACCGGCTTCTGCTGCTTCCAGTCCCCGCATATGTCCTGGATCAGCG------CCCCAGGTGGGACTTTCAGCTCATCAAGGCCGTCGACCACGAACAAGATTCTCTGTGCTTGGGCTAGGATGCTTGGAATGTCATCCTGCAATTCAGGCCAGTCTTTGGAGATCAGCTCTGCAAAACTGCACGGGCGCATGCGGCTGAGCTCCTTGCAGCTGAGGTAGAAAGCGTATCTGACCGTCGGGCTGAGGTTGCAGTCTGACCAGTCCAGCATACACTTTTTGGCCAGTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45903304 1048 +  49145316 GTCTCCAACTCCGCGGCTCTCTTCTCGTTGGCAAGGCCGAATAAGAAGTGTCCCGCTTGGATCAGGTCGGGGTTCTGGACTCTTTCTTCTCCAGAAAGCAGCCTCTGCACATCCCCAATGTCCCAGGCGTGG-CCGTCCCT--------GTCCT---CCTCCTCCTTCTCCAGGGCGTAGAACAGCGCAGTGAAAAACTGCTGGAAGCTGAGGTGGAGGAAGGAGTAGCAGTCTTTAGAGTCTCTATCCTGGCGGAGGATGCCTCTGTCCAGGAACGGGCGGAGGTCGGACTCCTGCACCCCGAAGCTCTCCAGGTCCTCTCTGTGGAACACGGACATCTGCGCCCACAGGCCCTGCGCAGCCAGGATGCTCAGCGCCCGCAGCGTGCCCCCGAGCTGTG------------CACCCTTCGGG------AAGCGGCTGCAGAGAAAGTGCAGGAACAGCCCCGTGCAGGTGTGGCAGGTGGTGGCCGGGTCCTCCCCATTCTCCATCTGCAGCTTCAGACTCGTGCACACCATCCAGCACACCGCGGGCGCCGAGCCCAGCTGGAACAGGGCCGCGTTGCTTCTCATCAGCTCAAAGGCACGCGTGGCTTGGTCCTCCTCTCCAAAGTGTGTCAGGAAATAGGCCCTCCTGTCCTCCTCCAGGAACCCCTCCACCCTTATGTAGATGGGCTTCTCGGCCAGGAGCTGCAGGTCCCTCAGGGACCTGGGCCGTGTGGTGACCAGCAGGGCGGCCTTGGGTAACATCTTCCTCTTCAGCAAACTCCCCAGGAGGACCGGCACCGGCTTCGGCTTCAGCCAGTCCCCGCAGATGTCGTAGATCAGCG------CCCCGGGGGGCACTCTCAGCTCATCGAGGCCGTCGACCACAATCAGGATTCTCTGTGCTTGGGCGAGGATGTCTGGAATGTCATCCTGCAATTCCGGCTGGTCTCTGGCGATCAGCTCTGCAAAACTGCACGGGCCCAGCCGGCTGAGCCCCTTGCAGCTGAGGTAGAAAGCGTACCTGGCCTTTGGGCCGAGGTTGTAGTCTTTCCAGTCCAGCATACACTTCTTGGCCAGCG
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102632289 1081 + 122678785 ATCCCCAGCTCCCTGGCCCTCTTTTCATTGGTGAGGCCAAATAGGAAGTGCCCCACGGGGGCTAGGTAGGGGTTCTTGAGTCCTTCTTCCTTGGAGAGGAGCCTCTGCACATTCCCAGCATCCCAGCTAGGG-C--TTCCTGCTGGAAGGTCTTGGTGGTCCTGGCTCCCCAGAATGTAGAGGGCAGCGGCCAGGAACTGCTGGACACTCAGGTGGAGGAAGCAGTAGCAGCCCTCACAGTCTCTGCTCTTCTGGAGGATATTCCTGTTCAGGAAAGGGTGCAGGTCAGACTCATGCACACCCAGCCTGAGCAGGTCATGTCCATCAAACACTGAGGTCTGTGTCCACACGCCCTCAGTGGCCAGCAGGCACAGAGCGTGCAGAGTAGACCTGAGGTGCAGCCCCAGACAGCTGCCCTGCGCGGGCGCAAACTGGCTGCAGAGGAAACGCAGCAACAACGATGTGGTGGTCTGGCAGGTGGGGCCAGGGTCCTCACCCTCGTCCATCTGCAGCTTCAGGCAGGTGCACACCATCCAGCACACAGCGGGTGCCGCGCCCATTTGGAACAGCGTTGCATTGCTCTTCATCAGGTGGAAAGCACGCAGCGCCTGAGCCTCCTCTCCAAAGTGTCTCAGGAAATACGCCTTCCTGTCACACTCTGAGAGCCCCTCGATCTCCACGAAGAGTGGCTGCTCCACCATGAGCCGCAGCTCCCTTAGGGCCTCGGGCCGTGTGGTGACCAGTAGGGCGGCCGTGGGTAAGAGCTTTCTCTTCAGTAAGCTCCCCAGGAGGGTGGACGCAGGCCTCTGTGTCTTCCAGTCCACACACAGGTCGTGCACCAGCGCCTCCACCCCTGAGGGCACGCGCAGCTCCTCGAAAGCATCAATGACAAACAGGAGTTTCTGTGCCTGGGTCAGGACCTGTGCAAGGGCATCCTGCAGGTCTGGGGCACTCTGGGCCAGGAGTTCTATGAAGGAGCACATCCCCTTGCGGCTGAGCGCCTTGCAGCTGAGATAGAAGGCAGTGGGGCAGGTCTGTGCAAGGCTGTCCTCTGTCCAGTCCAGCATGCACTTCTTGGCCAGAG
i canFam3.chr1              C 0 C 0

a score=163138.000000
s hg38.chr19_GL949751v2_alt    858627 45 +   1002683 TGGTTTTCCCCACGCCTGCGGGGCCGTGCAGCACCACCGTGTAAG
s panTro4.chr19              59860377 45 +  63644993 TGGTTTTCCCCACGCCCGCGGGGCCGTGCAGCACCACCGTGTAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771509 45 +  60714840 TGGTTTTCCCCACGCCCGCGGGGCCGTGCAGCACCACTGTGTAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10               3617664 44 + 106955855 TGGTTTT-CCCAAGGCTGCAGGACCGTGCAGCACCACCGTGTAGG
i nomLeu3.chr10             n 0 I 31972
s rheMac3.chr19              60597278 45 +  64156825 TGGTTTTCCCCACGCCCGCGGGGCCGTGCAGCACCACGGTGTAAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737016 45 +  59248254 TGGTTTTCCCCACGCCCGCGGGGCCGTGCAGCACCACGGTGTAAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47842559 45 +  51301725 TGGTTTTCCCCACGCCCGCGGGGCCGTGCAGCACCACGGTGTAAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552050 45 +  50890351 TGGTTTTCCCCACGCCCGCGGGGCCGTGCAGCACCACGGTGTAAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904352 45 +  49145316 TGGTTTTCCCCACACCCGCAGGACCGTGCAGAACCACCGTGTAAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102633370 45 + 122678785 TGGTCTTCCCAACGCCCGCAGGACCATGCAGCACCACCGTGTGTG
i canFam3.chr1              C 0 C 0

a score=388882.000000
s hg38.chr19_GL949751v2_alt    858672 165 +   1002683 GTGTTAGCTTCCTGGGTGTTCTGGGATTCAAGAATGGAATGAACCGTTGGTTTCTCAGAGTGACGTCGTCATGGAAATTGTCAATGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CAAAGACTGTTTCTCCATTGAATTTCTCCATCCTTCCTTTTCACCTGCAG
s panTro4.chr19              59860422 165 +  63644993 GTGTTAGCTTCCCGGGTGTTCTGGGATTCAAGAATGGAATGAACCGTTGGTTTCTCAGAGTGACGGCGTCATGGAAATTGTCAATGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CGAAGATTGTTTCTCCATTGAATTTCTCCATCCTTCCTTTTCACCTACAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771554 165 +  60714840 GTGTTAGCTTCCTGGGTGTTATGGGATTCAAGAATGGAATGAACCGTAGGTTTCTCAGAGTGACGTCGTCATGGAAACTGTCAATGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CAAAGATTGTTTCTCCATTGAATTTCTCCGTCCTTCCTTTACACCTGCAG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60597323 165 +  64156825 GTGTTAGCTTCCTCGGTGTGCTGGGATTCAAGAATGGAATGAACCGTTGGTTTCTCTGAATGACGTCGTCATGGAAACTGTCAATGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CAAAGATTGTTTCTGCACTGAATTTCTCTGTCCCTCCTTTTCACCTGCAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737061 165 +  59248254 GTGTTAGCTTCCTCGGTGTGCTGGGATTCAAGAATGGAATGAACCGTTGGTTTCTCTGAATGACGTCGTCATGGAAACTGTCAATGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CAAAGATTGTTTCTGCACTGAATTTCTCTGTCCCTCCTTTTCACCTGCAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47842604 165 +  51301725 GTGTTAGCTTCCCGGGTGTTCTGGGATTCAAGAATGGAATGAACCGCTGGTGTCTCAGAATGACGTCGTCATGGAAACTGTCAATGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CAAAGATTGTTTCTGCATTGAATTTCTCCGTCCCTCCTTTTCACCTGCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552095 165 +  50890351 GTGTTAGCTTCCCGGGTGTTCTGGCATTCAAGAATGGAATGAACCGTTGGTTTCTCCGAATGACGTCGTCATGGAAACTGTCAGTGTCTCCTTGCCAAAAGGTGTTCTTCCAGAC---CAAAGATTGTTTCTGCATTGAGTTTCTCCGTCCCTCCTTTTCACCTGCAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904397 165 +  49145316 GGGCTGGCTGCGTGGGTCTTCTGGGATTCAAGAATGGAATGAACCTTTGGTTTCTCTGAGTGACATGGTCGTGGAAATTGTCACTGTCTCCTCGCCAAAAAGTGTTCCGCGAGAC---CAAAGACTGTTCGTCAGTCACGTTTCTCCATCCTTCCTTCTCACCTGCAG
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102633415 165 + 122678785 GAAATGGTCCTGCAAGCATTTTAGGATTACAGAATGGGATCAGTGTCTCATATTTCTGGGTGACAGTG---TGAATGTTTTCACTGGCTCCAGGCCAAAAGTTCTTCTTCCACATTTGCTGGACCTTCTCTTTCAATATACTTATATACTTATCTTGTTTACCTTCAG
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10               3617708 31972 + 106955855 I

a score=20106.000000
s hg38.chr19_GL949751v2_alt    858837 5 +   1002683 TGACA
s panTro4.chr19              59860587 5 +  63644993 TGACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771719 5 +  60714840 TGACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306436 5 - 106955855 TGACA
i nomLeu3.chr10             M 207 C 0
s rheMac3.chr19              60597488 5 +  64156825 TGACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737226 5 +  59248254 TGACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47842769 5 +  51301725 TGACA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552260 5 +  50890351 TGACA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904562 5 +  49145316 TGACA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102633580 5 + 122678785 TGATA
i canFam3.chr1              C 0 I 30

a score=161631.000000
s hg38.chr19_GL949751v2_alt    858842 61 +   1002683 GCCCATAGGACAGTTGAGGTTGATGATGATGATTTTCTG--AATTATTTTGTCAAGTACCAGA
s panTro4.chr19              59860592 63 +  63644993 GCCCATAGGACAGTTGAGGTTGATGATGATGCTCTTCTGAAAATTACTTAGTCAAGTACCAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771724 63 +  60714840 GCCCATAGGACAGTTGAGGCTGATGATGATGCTCTTCTGAAAATTACTTTGTCAAGTACCAGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306441 63 - 106955855 GCCCATAGGACAGTTGAGGCTGATGATGATGCTCTTCTGAAAATTACCTTGTCAAGTACCAGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60597493 63 +  64156825 GCCCACAGGACAGTTCAGGTTGATGATTACACTCTTCTGAAAATAACTTTGCCAAGTACCAGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737231 63 +  59248254 GCCCACAGGACAGTTCAGGTTGATGATTACACTCTTCTGAAAATAACTTTGCCAAGTACCAGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47842774 63 +  51301725 GCCCATAGGACAGTCGAGGTTGATGATTACGCTCTTCTAAAAATAACTTTGCCAAGTACCAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552265 63 +  50890351 GCCCATAGGACAGTTGAGGTTGATGATTACACTCTTCTGAAAATTACTTTGCCAAGTACCAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904567 62 +  49145316 GACCACAGGACAGGTGAGGTTGGGGA-GATATTCATCTGAAAATGACTGTGTAAAGTACCAGA
i calJac3.chr22             C 0 I 1893
e canFam3.chr1              102633585 30 + 122678785 I

a score=39240.000000
s hg38.chr19_GL949751v2_alt    858903 16 +   1002683 AATGAGggccaggcac
s panTro4.chr19              59860655 16 +  63644993 AATGAGggccaggcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771787 16 +  60714840 AATGAGggccaggcac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306504 16 - 106955855 AATGAGggccaggcac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60597556 16 +  64156825 AATGAGggccgggtac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737294 16 +  59248254 AATGAGggccgggtac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47842837 16 +  51301725 AATgagggccgggtac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552328 16 +  50890351 AATGAGggccgggtac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102633585 30 + 122678785 I
e calJac3.chr22              45904629 1893 +  49145316 I

a score=10476.000000
s hg38.chr19_GL949751v2_alt    858919 3 +   1002683 ggt
s panTro4.chr19              59860671 3 +  63644993 ggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771803 3 +  60714840 ggt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306520 3 - 106955855 ggt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60597572 3 +  64156825 ggt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737310 3 +  59248254 ggt
i macFas5.chr19             C 0 I 541
s papAnu2.chr19              47842853 3 +  51301725 ggt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552344 3 +  50890351 ggt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3237880 3 -  49145316 ggt
i calJac3.chr22             I 39388 C 0
e canFam3.chr1              102633585 30 + 122678785 I

a score=785473.000000
s hg38.chr19_GL949751v2_alt    858922 267 +   1002683 gtctcatgcttgtaatcccggcactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatagtgaaaccccatctctactaaaaatacaaaacattagctgggggtagtggcggccgcctgtaatcccggctactcaggaggctgaggc-agagaattgcttgaacccgggaggcagaggttgcaatgagcagagacggagccactacactccagcctgggctac-agagcaagattccgtc
s panTro4.chr19              59860674 267 +  63644993 gtctcatgcttgtaatcccggcactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatagtgaaaccccatctctactaaaaatacaaaacattagctgggggtagtggcggccgcctgtaatcccagctactcaggaggctgaggc-agagaattgcttgaacccgggaggcggaggttgcaatgagcagagacggagccactgcactccagcctgggctac-agagcaagattccatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56771806 267 +  60714840 ggctcatgcttgtaatcccagcactttgggaggccgaggtgggtggatcacttgagatcaggagttccagaccagcctggccaagatagtgaaatcccatctctactaaaaatacaaaacattagctgggggtagtggcgggcgcctgtaatcccagctactcaggaggctgaggc-agagaattgcttgaacccgggaggcggaggttgcaatgagcaaagacggagccactgcactccagcctgggctac-agagcaagattccgtc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306523 266 - 106955855 ggctcatgcttgtaatcccagcactttgggaggccgaggtgggtggatcacttaaggtcagaagttcaagaccagcctggccaagatagtgaaatcccatctctactaaaaatac-aaacattagctgggggtagcggcgggcgcctgtaatcccagctactcaggaggctgagtc-acagaattgcttgaacccaggaggcggaggttgcaatgagcagagacggagccactgcactccagcctgggctac-agagcaagatcccgtc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60597575 267 +  64156825 ggctcacgcctgtaatcccagcacttcgggaggccgaggtgggtggatcacttgaggtcaggagttcaagaccaacctggccaagatagtgaaaccccgtctctaccaaaaatacaaaacattagctgggggtagtggcgggcgcctgtaatcccagctactcaagaggctgaggc-agagaattgcttgaacccgggaggcggaggttgcaatgagcagagatggaaccactgcacgccagcctgggggac-agagcaagattccgtc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55737854 267 +  59248254 ggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccaacctggccaagatagtgaaaccccgtctctactaaaaatacaaaacattagctgggggtagtggcgggcccctgtaatcccagctactcaagaggctgaggc-agagaattgcttgaacccgggaggcggaggttgcaatgagcagagatggaaccactgcacgccagcctgggggac-agagcaagattccgtc
i macFas5.chr19             I 541 C 0
s papAnu2.chr19              47842856 267 +  51301725 ggctcacgcctgtaatcccagcacttcaggaggccgaggtgggtggatcacttgaggtcaggagttcaaaaccaacctggccaagatagtgaaaccccgtctctactaaaaatacaaaacattagctgggggtagtggcgggcgcctgtaatcccagctactcaagaggctgaggc-agagaattgcttgaacccgggaggtgggggttgcaatgagcagagatggaaccactgcactccagcctgggggac-agagcaagattctgtc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552347 267 +  50890351 ggctcacgcctgtaatcccagcacttcgggaggcccaggtgggtggatcacttgaggtcaggagttcaagaccaacctggccaagatagtgaaaccccgtctctactaaaaatacaaaacattagctgggggtagtggcgggcacctgtaatgccagctactcaagaggctgaggc-agagaattgcttgaagccgggaggtagaggttgcaataagcagagatggaaccactgcactccagcctgggagac-agagcaagattctgtc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3237883 267 -  49145316 ggctcacgccgataatcccagcactttgggaggctgaggcgggtggatcac--gaggtcaagagattgagaccatcctggttgacatggtgaaaccccgtctctactaaacatacaaaaaattagctgggcacggtggcgcatgcctgtaatcccagctactcaggaggctgaggcgggagaatcgcctgaacccaggaggcggaggttgcggtgagccgagatcgcgccattgcactccagcctgggtgacaagagcgaaactccgtc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102633585  30 + 122678785 I

a score=2101.000000
s hg38.chr19_GL949751v2_alt    859189  3 +   1002683 tc----------a
s panTro4.chr19              59860941  3 +  63644993 tc----------a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772073  3 +  60714840 tc----------a
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306789  3 - 106955855 tc----------a
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60597842  3 +  64156825 tc----------a
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55738121  3 +  59248254 tc----------a
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47843123  2 +  51301725 tc-----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552614 13 +  50890351 tcaaaaaaagaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3238150  3 -  49145316 tc----------a
i calJac3.chr22             C 0 T 27878
s canFam3.chr1              102633615  3 + 122678785 TC----------A
i canFam3.chr1              I 30 C 0

a score=575906.000000
s hg38.chr19_GL949751v2_alt    859192 204 +   1002683 ----aaaaaaaaaaaaaC--TACCAGAAATGAATAAAACCAGGAAGAAGTGATGCACCTTGCATGCTCTCAAACACCAAACTCAT----GACCATAGGACCGTATTTACCCACCTGGCTTTGCTAACTCCGAGTCTTCTTCTGCATCTCCCAGCTCAGGATTATCTATTTCTTGCACCTGTCCGTCCTCTGTAAAATAC---TTAGATGTAAGCCTG
s panTro4.chr19              59860944 201 +  63644993 ----aaaaaaaaaaaa-----gccagaaatgaataaaaCCAGGAAGAAGTGATGCACCTTGCACGCTCTCAAACACCAAACTCAT----GACCACAGGACCGTATTTACCCACCTGGCTTTGCTAACTCCGAGTCTTCTTCTGCATCTCCCAGCTCAGGATTATCTATTTCTTGCACCTGTCCGTCCTCTGTAAAATAC---TTAGATGTAAGCCTG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772076 200 +  60714840 ----aaaaaaaaaGTA------CCAGAAATGAATAAAACCAGGAAGAAGTGATGCACCTTGCACGCTCTCAAACATCAAACTCAT----GACCACAGGACTGTATTTACCCACCTGGCTTTGCTAACTCCGAGTCTTCTTCTGCATCTTCCAGCTCAGGATTATCTGTTTCTTGCACCTGTCCATACTCTGTAAAATAC---TTAGATGTAAGCCTG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306792 195 - 106955855 ----aaaaaaaaaaaG----TACCAGAAATGAAGAAAACCAGGAAGAAGTGATGCACCT-------TCTCAAACACCCAACTCAT----GACCACAGGACCGTATTTACCCACCTGGCTTTGCTAACTCCGAGTCTTCTTCTGCATCTCCCAGCTGAGGATTATCTATTTCTTGCACCTGTCCGTCCTCTGTAAAATAC---TTAGACGTAAGCCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60597845 206 +  64156825 ----aaaaaaaaaaaaaaaaTACCAGAAATGAAGAAAACCAGGAAGAAGTGATGCACCTTGCACGCTCTCAAACACCACACTCAT----GACCACAAGACCGTATTTACCCACCTGGCTTTGCTAACTCTGAGTCTTCTTCTGCATCTCCCAGCTGAGGGTTATCTATTTCTTGCACCTGTCCGGCCTCTGTAAAATAC---TTAGATGTAAGCCTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55738124 206 +  59248254 ----aaaaaaaaaaaaaaaaaaCCAGAAATGAAGAAAACCAGGAAGAAGTGATGCACCTTGCACGCTCTCAAACACCACACTCAT----GACCACAAGACCGTATTTACCCACCTGGCTTTGCTAACTCTGAGTCTTCTTCTGCATCTCCCAGCTGAGGGTTATCTATTTCTTGCACCTGTCCGGCCTCTGTAAAATAC---TTAGATGTAAGCCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47843125 206 +  51301725 ----aaaaaaaaaaaaaaaataccagaaatgaagaaaaccaggaagaaatgatGCACCTTGCACGCTCTCAAACACCACACTCAT----GACCACACGACCGTATTTACCCACCTGGCTTTGCTAACTCTGAGTCTTCTTCTGCATCTCCCAGCTGAGGGTTATCTATTTCTTGCACCTGTCCGGCCTCTGTAAAATAC---TTAGATGTAAGCCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552627 206 +  50890351 ----aaaaaaaaaaaaaaaGTACCAGAAATGAAGAAAACCAGGAAGAAGTGATGCACCTTGCACGCTCTCAAACACCACACTCAT----GACCACACGACCATATTTACCCACCTGGCTTCACTAACTCTGAGTAGTCTTCTGCATCTCCCAGCTGAGGGTTATCTATTTCTTGCACCTGTCCGGCCTCTGTAAAATAC---TTAGATGTAAGCCTG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45906522 196 +  49145316 ------AAGAAAACACGAATCACT--AAATGAAGAAAACCAGGAAGAAGTGATGCGCCTTGCACCTTCCCAAACGCCGAAGTCGC----GACGAGAC-----TGTTCACCCACCTGGCTTTGCTGACTCCAAGTCTTCTTCTAAGTCTCCCAGCTCAGGGTTATCTACTTCTTCCATCTGTCTGTCCTCTGTAAAATAC---ACAGACG-GAGCCTG
i calJac3.chr22             I 1893 T 1914
s canFam3.chr1              102633618 203 + 122678785 TTAGGAAAAAAAAATACCTGTGTCAAGTAAGAACATGATAATAGAGAAGTTATCAA------GAACTACCTGACACTAAGCTCATCCAGGAAGATAGGA-------TACAGACCTGGCTTTTCTCCTTTCAAACCTTCCTTTGCTTCTTCTGGATTTGTGACATCTTCTTCCTGTACTTGTGTAAATGCTGCAAAATACAAATTAAA-GTGAGCATG
i canFam3.chr1              C 0 C 0

a score=94449.000000
s hg38.chr19_GL949751v2_alt    859396 31 +   1002683 ACACAGTAATTTACACTTCGTAAATCAGACA
s panTro4.chr19              59861145 31 +  63644993 ACACAGTAATTTACACTTCGTAAATCAGACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772276 31 +  60714840 ACACAGTAATTTACACTTCGTAAATCAGACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103306987 31 - 106955855 ACACAGTAATTTACACTTCGTAAATCAGACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60598051 31 +  64156825 ACACAGCAATTTGCACTGCGTAAATCAGACA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55738330 31 +  59248254 ACACAGTAATTTGCACTGCGTAAATCAGACA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47843331 31 +  51301725 ACACAGCAATTTGCACTGCGTAAATCAgaca
i papAnu2.chr19             C 0 I 540
s chlSab2.chr6               47552833 31 +  50890351 ACACAGCAATTTGCACTGCGTAAATCAGACA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904804 31 +  49145316 TCATGGTCATTTGTACTTCCTGAATCAGGCA
i calJac3.chr22             T 1914 C 0
s canFam3.chr1              102633821 31 + 122678785 ACACAAAAATGTGAATTTCTTTTATCAGAGA
i canFam3.chr1              C 0 C 0

a score=4095.000000
s hg38.chr19_GL949751v2_alt    859427 1 +   1002683 T
s panTro4.chr19              59861176 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772307 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103307018 1 - 106955855 T
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60598082 1 +  64156825 T
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55738361 1 +  59248254 T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47843902 1 +  51301725 T
i papAnu2.chr19             I 540 C 0
s chlSab2.chr6               47552864 1 +  50890351 T
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904835 1 +  49145316 T
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102633852 1 + 122678785 T
i canFam3.chr1              C 0 I 3195

a score=49715.000000
s hg38.chr19_GL949751v2_alt    859428 19 +   1002683 TATTGTACATAAAGTGTCA
s panTro4.chr19              59861177 19 +  63644993 TATTGTACATAAAGTGTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772308 19 +  60714840 TATTGTACATAAAGTGTCa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103307019 19 - 106955855 TATTGTACATAAAGCGTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60598083 19 +  64156825 TATTATGCATAAAGTGTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55738362 19 +  59248254 TATTATACATAAAGTGTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47843903 19 +  51301725 TATTATACATAAAGTGTca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552865 19 +  50890351 TATTATACATAAAGTGTCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45904836 19 +  49145316 TGTAGAAAAGAAAGCATCA
i calJac3.chr22             C 0 I 4633
e canFam3.chr1              102633853 3195 + 122678785 I

a score=565980.000000
s hg38.chr19_GL949751v2_alt    859447 261 +   1002683 gccaggcatggtggctcatgcctgtaatcacagcactttggaaggctgaggtgggcggatcacaaggtcaggagatcaagaccagcctggccaacatggcaaaaccccatctctactaaaaatac-----aaaaaaaaa-aaaattagccaggtgtggtgaaacacgcctgtaatcccagctactccggaggctgagataggagaatcacttgaacccagaggcggaggttgcagtgagcccagatctcgccactgcactccagcct
s panTro4.chr19              59861196 260 +  63644993 gccaggcatggtggctcatgcctgtaatcacagcactttggaaggctgaggtgggcagatcacaaggtcaggagatcaagaccagcctggccaacatggcaaaaccccatctctactaaaaatac------aaaaaaaa-aaaattagccaggtgtggtggaacacgcctgtaatcccagctactccggaggctgagataggagaatcacttgaacccagaggcgtaggttgcagtgagcccagatctcaccactgcactccagcct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772327 247 +  60714840 gccaggcatggtggctcacgcctgtaatcacagcactttggaaggctgaggtgggcggatcacaaggtcaggacatcaagaccagcctggccaacatggcaaaaccccatctctactaaaaatac-------aaaaaaa-aaaattagccaagtgtggtggcacacgcctgtaatcccagctactccagaggctgagataggagaatcactt-aacccagaggcagaggttgcagtgagcacagatctcaccactg-----------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103307038 247 - 106955855 gccaggcatggtggctcacgcctgtaatcacagcactttggaaggctgaggtgggtggatcacaaggtcaggagatcaagaccagcctggccaacatggcaaaaccccatctctactaaaaatac-------aaaaaaa-aaaattagccaggtgtggtggcacacacctgtaat-ccagctactcgggaggctgagataggaaagtcgcttgaacccagaggcggaggttgcagtgagcccagatctcaccactg-----------
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60598102 266 +  64156825 gctgggcgtggcggctcacgcctgtaatcccagcactttgagaggctgaggtgggcaaatcacaaggtcaggagctcaagatcagcctggccaatgtggcaaaaccccatctctactaaaaataccaaaaaaaaaaaaa-aaaattagccaggtatgatggcacaggcctgtaatcccagctactcgggaggctgagataggagaatcacttgaacctggaggcggaggttgcagtgagccaagatctcaccactgcactccagcct
i rheMac3.chr19             C 0 I 1440
s macFas5.chr19              55738381 252 +  59248254 gccgggcgtggcggctcacgcctgtaatcccagcactttgagaggctgaggtgggcaaatcacaaggtcaggagctcaagaccagcctggccaatgtggcaaaaccccatctctactaaaaatacc---aaaaaaaaaa-aaaattagccaggtatgatggcacaggcctgtaatcccagctactcgggaggctgagataggagaatcacttgaacctggaggcggaggttgcagtgagccaagatctcaccactg-----------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47843922 256 +  51301725 gccgggcgcggcggctcacgcctgtaatcccaacactttggaaggctgaggtgggcagatcacaaggtcaggaactcaagaccagcctggccaacatggcaaaaccccatctctactaaaaataccaaaaaaaaaaaaataaaaaaagccaggtatgatggcacaggcctgtaatcccagctactcgggaggccgagatagaagaatcacttgaacctggaggcggaggttgcagtgagccaagatctcaccactg-----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47552884 262 +  50890351 gccaggcgcggcggctcatgcctgtaatcccagcactttgggaggctgaggtgggcaaatcacaaggtcaggagctcaagaccagcctggccaatgtggcaaaaccccatctctactaaaaatacc----aaaaaaaaa-aaaattagccaggtatgatggcacaggcctgtaatcccagctactcgggaggctgagatagaagaatcacttgaacctggaggcggaggttgcagtgagccaagatctcaccactgcactccagcct
i chlSab2.chr6              C 0 I 1475
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I

a score=50840.000000
s hg38.chr19_GL949751v2_alt    859708 46 +   1002683 tacactccagcctgggcgacagaacgagactccatctcaaaaaaaa
s panTro4.chr19              59861456 40 +  63644993 tacactccagcctgggcgacagagcgagactccatctc------aa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56772574 44 +  60714840 --cactccagcctgggcgacagagcgagactccatctcaaaaaaaa
i ponAbe2.chr19             C 0 I 2071
s nomLeu3.chr10             103307285 44 - 106955855 --cactccagcctgggcgacagagcgagactccatctcaaaagaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55738633 44 +  59248254 --cactccagcctgagtgacagagcgagactctgtctcaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47844178 44 +  51301725 --cactccagcctgggcaacagagtgagaccctgtctcaaaaaaaa
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I
e chlSab2.chr6               47553146 1475 +  50890351 I
e rheMac3.chr19              60598368 1440 +  64156825 I

a score=1365.000000
s hg38.chr19_GL949751v2_alt    859754 1 +   1002683 a
s panTro4.chr19              59861496 1 +  63644993 a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774689 1 +  60714840 a
i ponAbe2.chr19             I 2071 C 0
s nomLeu3.chr10             103307329 1 - 106955855 a
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55738677 1 +  59248254 a
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47844222 1 +  51301725 a
i papAnu2.chr19             C 0 I 1452
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I
e chlSab2.chr6               47553146 1475 +  50890351 I
e rheMac3.chr19              60598368 1440 +  64156825 I

a score=1820.000000
s hg38.chr19_GL949751v2_alt    859755 2 +   1002683 aa
s panTro4.chr19              59861497 2 +  63644993 aa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774690 2 +  60714840 aa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103307330 2 - 106955855 aa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55738678 2 +  59248254 aa
i macFas5.chr19             C 0 I 1404
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I
e chlSab2.chr6               47553146 1475 +  50890351 I
e papAnu2.chr19              47844223 1452 +  51301725 I
e rheMac3.chr19              60598368 1440 +  64156825 I

a score=2115.000000
s hg38.chr19_GL949751v2_alt    859757 5 +   1002683 aaaaa
s panTro4.chr19              59861499 5 +  63644993 aaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774692 5 +  60714840 acaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103307332 5 - 106955855 aaaaa
i nomLeu3.chr10             C 0 I 1724
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I
e chlSab2.chr6               47553146 1475 +  50890351 I
e papAnu2.chr19              47844223 1452 +  51301725 I
e macFas5.chr19              55738680 1404 +  59248254 I
e rheMac3.chr19              60598368 1440 +  64156825 I

a score=1228.000000
s hg38.chr19_GL949751v2_alt    859762 6 +   1002683 aaaaaa
s panTro4.chr19              59861504 6 +  63644993 aaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774697 6 +  60714840 acaaaa
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I
e nomLeu3.chr10             103307337 1724 - 106955855 I
e chlSab2.chr6               47553146 1475 +  50890351 I
e papAnu2.chr19              47844223 1452 +  51301725 I
e macFas5.chr19              55738680 1404 +  59248254 I
e rheMac3.chr19              60598368 1440 +  64156825 I

a score=15540.000000
s hg38.chr19_GL949751v2_alt    859768 6 +   1002683 aaaTGA
s panTro4.chr19              59861510 6 +  63644993 aaaTGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774703 6 +  60714840 aaaTGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309061 6 - 106955855 AAATGA
i nomLeu3.chr10             I 1724 C 0
s rheMac3.chr19              60599808 6 +  64156825 AAATGA
i rheMac3.chr19             I 1440 C 0
s macFas5.chr19              55740084 6 +  59248254 AAATGA
i macFas5.chr19             I 1404 C 0
s papAnu2.chr19              47845675 6 +  51301725 AAATGA
i papAnu2.chr19             I 1452 C 0
s chlSab2.chr6               47554621 6 +  50890351 AAATGA
i chlSab2.chr6              I 1475 C 0
e canFam3.chr1              102633853 3195 + 122678785 I
e calJac3.chr22              45904855 4633 +  49145316 I

a score=19904.000000
s hg38.chr19_GL949751v2_alt    859774 6 +   1002683 CCAGGA
s panTro4.chr19              59861516 6 +  63644993 CCAGGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774709 6 +  60714840 CCAGGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309067 6 - 106955855 CCAGGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60599814 6 +  64156825 CCAGGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55740090 6 +  59248254 CCAGGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47845681 6 +  51301725 CCAGGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47554627 6 +  50890351 CCAGGA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              102637048 6 + 122678785 CTAGGA
i canFam3.chr1              I 3195 C 0
e calJac3.chr22              45904855 4633 +  49145316 I

a score=1077798.000000
s hg38.chr19_GL949751v2_alt    859780 346 +   1002683 CACC-------CCAGGTTCTACTTACCCATCATCTCAGCCTTTGCCATCTTACACAATTCCGTGAGATTCATCTCTTCCAAGATGTTCACAGTCGCATTCCTTATCCAATTTTCTGAGGAGGTGTTGACCAGAATTTCTGCCAGTTTCTTGCCATCAGCCTCTTCCACCTCAGACCATGGGGTCTTCTGTAGCACGTCTTCGAGGGGAAAAGCCCATAAAAGGGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGAGTCCACTCTAGCTGGGGCGATG---TCATAGTGCTCCGAGTATGAGACCTTAGGTTAAGGC--TGAAGA--ACTG-GGGGGAAA
s panTro4.chr19              59861522 346 +  63644993 CACC-------CCAGGTTCTACTTACCCATCATCTCAGCCTTTGCCATCTTACACAATTCCGTGAGATTCATCTCTTCCAAGATGTTCACAGTCGCATTCCTTATCCAATTTTCTGAGGAGGTGTTGACCAGAATTTCTGCCAGTTTCTTGCCATCAGCCTCTTCCACCTCAGACCATGGGGTCTTCTGTAGCACGTCTTCGAGGGGAAAAGCCCATAAAAGGGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGAGTCCACTCTAGCTGGGGCGATG---TCATAGTGCTCCGAGTATGAGACCTTAGGTTAAGGC--TGAAGA--ACTG-GAGGGAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56774715 346 +  60714840 CACC-------CCAGCTTCTACTTACCCATCATCTCAGCCTTTGCCATCTTACACAATTCCATGAGATTCATCTCTTCCAAGATGTTCACAGTCGCATTCCTTATCCAATTTTCTGAGGAGGTGTTGACCAGAATTTCTGCCAGTTTCTTGCCATCGGCCTCTTCCACCTCAGACCATGGGGTCTTCTGTAGCACGTCTTCGAGGGGAAGAGCCCATAAGAGGGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGAGTCCACTCTAGCTGGGGCGATG---TCATAGTGCTCCAAGTATGAGACCTTAGGTTAAGGC--TGAAGA--ACTG-GGGGGAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309073 347 - 106955855 CACC-------CCAGGTTCTACTTACCCAGCATCTCAGCCTTTGCCATCTTACACAATTCCGTGAGATTCATCTCTTCCAAGATGTTCACAGTTGCATTCCTTATCCAATTTTCTGAGGAGGTGTTGACCAGAATTTCTGCCAGTTTCTTGCCATCAGCTTCTTCCACCTCAGACCATGGGGTCTTCTGTAGCACGTCTTCCAGGGGGAGAGCCCATAAAAGGGATTTGAAACTCTTTAATTCATCCTCATTCAGCTGCTCCAGAAGGGTCTCCAGAGTCCACTGTAGCTGGGTTGCCA---TCATAGTGCTCCAAGTATGAGACCTCAGGTTAAGGC--TGAAGA--ACTGCGGGGGAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60599820 345 +  64156825 CACC-------CCAGGTTCTACTTACCCAGCATCTCAGACTTTGCCATCTTACACAATTCTGTGAGGTTCATCTCTTCCAAGACAGTCACAGTTGCACTCCTTATCCAATTTTCTGAGGACGTGTGGATTAGAATTTCTGCCAGCTTCTTGCTGTCAGCCTCTTCCACCTCAGACCATGGGGCCTTCTGCAGCACATCTTCCAGGGGAAGAGCCCTTAAGAGGGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGCGTCCACTCGAGCTGTGGCGATG---TCATAGTGCTCCACGTATGAGACCTTAGGTTAAGGC--TAAAGA--ACTG-GGAGAAA-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55740096 345 +  59248254 CACC-------CCAGGTTCTACTTACCCAGCATCTCAGACTTTGCCATCTTACACAATTCTGTGAGGTTCATCTCTTCCAAGACAGTCACAGTTGCACTCCTTATCCAATTTTCTGAGGACGTGTGGATTAGAATTTCTGCCAGCTTCTTGCCGTCAGCCTCTTCCACCTCAGACCATGGGGCCTTCTGCAGCACGTCTTCCAGGGGAAGAGCCCTTAAGAGGGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGCGTCCACTCGAGCTGTGGCGATG---TCATAGTGCTCCACGTATGAGACCTTAGGTTAAGGC--TGAAGA--ACTG-GGAGAAA-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47845687 345 +  51301725 CACC-------GCAGGTTCTACTTACCCAGCATCTCAGCCTTTGCCATCTTACACAATTCTGTGAGGTTCATCTCTTCCAAGACAGTCACAGTTGCACTCCTTATCCAATTTTCTGAGGACGTGTGGATTAGAATTTCTGCCAGCTTCTTGCCGTCAGCCTCTTCCACCTCAGACCACCGGGTCTGCTGCAGCACGTCTTCCAGGGGAAGAGCCCTTAAGAGGGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGCGTCCACTCGAGCTGTGGCGATG---TCATAGTGCTCCACGTATGAGACCTTAGGTTAAGGC--TGAAGA--actg-ggagaaa-
i papAnu2.chr19             C 0 I 314
s chlSab2.chr6               47554633 345 +  50890351 CACC-------CCAGGTTCTACTTACCCAGCATCTCAGACTTTGCCATCTTACACAATTCCATGAGGTTCATCTCTTCCAAGACAGTCACAGTTGCACTCCTTATCCAATTTTCTGAGGATGTGTTGATTAGAATTTCTGCCAGCTTCTTGCCATCAGCCTCTTCCACCTCAGACCACGGGGTCTTCTGCAGCACGTCTTCGAGGGGAAGAGCCCTTAAGAGCGATTTGAAACTCTTTAATTCATCCTCGTTCAGCTGCTCCAGAAGGGTCTGCAGCGTCCACTCGAGCTGTGGCGATG---TCATAGTGCTCCACGTATGAGACCTTAGGTTAAGGC--TGAAGA--ACTG-GGAGAAA-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45909488 346 +  49145316 CATT-------CCGTGTTCTGCTCACCCAGCAACTCCACCTTTGCCATCTCAGACAATTCGGGGAGATTCAGCTCTTCGAAGACCTTCACAGTCGCGTTCCTTATCCAGCATTCTGAGGATGTGTTGACCAGAATTTCTGCCAGTTTCCTGCCGTTGGCTTCTTCCACCTCCGACCACGGGGTCTTCTGTAGCACATCTTCTAGGGGAAAAGCCCTCAAGATGGACTTGAAAGTCCCCAATTCACCCTCGCTCAGCTGCTCCAGAAGGGTCTGCAGAGTGTACTGCAGCTGTGGTAATG---TCATGGTGCTCCACGTGTGACAGCTTAGGTCAAGGC--CAAAGA--TCTA-GGGGAAAA
i calJac3.chr22             I 4633 C 0
s canFam3.chr1              102637054 359 + 122678785 CACCATGTGGGCTTGTTTCTACTTACCCCTGAGCTCATCCTTTGCTCTCTCAGACAGATCGGTTCGGTTCATCTTGTCAAAAATCTGGATGGTCACCATCTCTACCCAGTGGCTGGGGCAGTGGTTGATAAGAATTTCTGCCAGCTGCTTCCCATCGGCCTCCTCTACCTCTGTCGCAGGGATGTGCTGTAATTCATCTTGTAGGGAAAGGGGCCTCAACAGAGACTTGAACTGGCTCAGCTCATCCTGGGCAAACTGTTCTAGAAGGGGCTGCAGGTTGAAACCCAGCTGTGCAGAAGGTTCCATCTTGTTCTACATGAGAGATCTGAGCTTTGGGCATTAAAGAAGAATA-AGGGAAG-
i canFam3.chr1              C 0 C 0

a score=42929.000000
s hg38.chr19_GL949751v2_alt    860126 17 +   1002683 AAAGGAAAAACAGTTCA
s panTro4.chr19              59861868 17 +  63644993 AAAGAAAAAACAGTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56775061 17 +  60714840 AAAGAAAAAACAGTTCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309420 17 - 106955855 AAAGAAAACACAGTTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60600165 17 +  64156825 AAAGAAACAACAGTTCA
i rheMac3.chr19             C 0 I 480
s macFas5.chr19              55740441 17 +  59248254 AAAGAAACAACAGTTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47846346 17 +  51301725 aaagaaaaaacaattca
i papAnu2.chr19             I 314 C 0
s chlSab2.chr6               47554978 17 +  50890351 AAAGAAACAACAGTTCA
i chlSab2.chr6              C 0 I 318
s calJac3.chr22              45909834 13 +  49145316 ----AAGGAACAGTTCA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102637413 13 + 122678785 AAATGAAAGAGAG----
i canFam3.chr1              C 0 C 0

a score=1219.000000
s hg38.chr19_GL949751v2_alt    860143 1 +   1002683 C
s panTro4.chr19              59861885 1 +  63644993 C
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56775078 1 +  60714840 C
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309437 1 - 106955855 C
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55740458 1 +  59248254 T
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47846363 1 +  51301725 t
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45909847 1 +  49145316 C
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102637426 1 + 122678785 C
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               47554995 318 +  50890351 I
e rheMac3.chr19              60600182 480 +  64156825 I

a score=4435.000000
s hg38.chr19_GL949751v2_alt    860144 2 +   1002683 GA
s panTro4.chr19              59861886 2 +  63644993 GA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56775079 2 +  60714840 GA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309438 2 - 106955855 CA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60600662 2 +  64156825 GA
i rheMac3.chr19             I 480 C 0
s macFas5.chr19              55740459 2 +  59248254 gg
i macFas5.chr19             C 0 I 598
s papAnu2.chr19              47846364 2 +  51301725 gA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47555313 2 +  50890351 GA
i chlSab2.chr6              I 318 C 0
s calJac3.chr22              45909848 2 +  49145316 AA
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102637427 2 + 122678785 GA
i canFam3.chr1              C 0 C 0

a score=174733.000000
s hg38.chr19_GL949751v2_alt    860146 65 +   1002683 GTTACCATCATTAAATGAAACCACAGTTTCCTGTGTGCCAAGAACAAGA-----CTGTTCCTGCTGTACA
s panTro4.chr19              59861888 65 +  63644993 GTTACCATCATTAAATGAAACCACAGTTTCCTGTGTGCCAAGAACAAGA-----CTGTTCCTGCTGTACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56775081 63 +  60714840 GTTACCATCATTAAATGAAAC--CAGTTTCCTATGTACCAAGAACAAGA-----CTGTTCCTGCTGCACC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309440 65 - 106955855 GTTACCATCATTAAATGAAACCACAGTTGCCTATGTGCCAAGAACAAGA-----CTGTCCCTGCAGCACC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60600664 65 +  64156825 GTTACCATCATTAAATGAAACAACAGCTGCCTATGTGCTGAGAATGAGA-----CTGTTCCCGCTGCACC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55741059 65 +  59248254 GTTACCATCATTAAATGAAACAACAGCTGCCTATGTGCTGAGAATGAGA-----CTGTTCCCGCTGCACC
i macFas5.chr19             I 598 C 0
s papAnu2.chr19              47846366 70 +  51301725 GTTACCATCATTAAATGAAACAACAGCTGCCTGTGTGGCGAGAATGAGACTGTTCTGTTCCCGCTGCACC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47555315 65 +  50890351 GTTACCATCATTAAATGAAACAACAGCTGCCTGTGTGCCGAGAATGAGA-----CTGTTACCGCTGCACC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45909850 61 +  49145316 GTTACCATCATTCAATGAAA--ACAGTGGCCTGTGTGCCGAGAACAA-------CTGTCCGTGCCGTACC
i calJac3.chr22             C 0 C 0
s canFam3.chr1              102637429 65 + 122678785 ATCAGTATTCCTACTTCAAATGACAGTTGCCTCTGTGCCAAGAACTGGG-----CAATTATCACTGCCCA
i canFam3.chr1              C 0 n 0

a score=93711.000000
s hg38.chr19_GL949751v2_alt    860211 39 +   1002683 GTGAGTGGTAAAATATTCCAAAGACTGAATTAAGAGACT
s panTro4.chr19              59861953 39 +  63644993 GCGAGTGGTAAAATATTCCATAGACTGAATTAAGAGACT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56775144 39 +  60714840 ATAAGTGGTAAAATATTACATAGACTGAATTAAGAGACG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309505 39 - 106955855 ATGAGTGGTAAAATATTATGTAGACTGAATTAAGAGACG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60600729 39 +  64156825 AGGAGTGCTAAAATATTACGTAGACTGAATTAAGAGACG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55741124 39 +  59248254 AGGAGTGCTAAAATATTACGTAGACTGAATTAAGAGACG
i macFas5.chr19             C 0 T 568
s papAnu2.chr19              47846436 39 +  51301725 AGGAGTGCTAAAATATCACGTAGACTGAATTAAGAGACG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47555380 39 +  50890351 AGAAGTGCTAAAATATTACATAGACTGAATTAAGAGACG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45909911 38 +  49145316 CTGAGTGGTGAAACGTGAGGTAGACCGAATTAAGAGAT-
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I

a score=96484.000000
s hg38.chr19_GL949751v2_alt    860250 34 +   1002683 GAAAATCTGGCCCAGCACggtggctcacgcctgc
s panTro4.chr19              59861992 34 +  63644993 GAAAATCTggcccagcacggtggctcatgcctgc
i panTro4.chr19             C 0 I 42
s ponAbe2.chr19              56775183 34 +  60714840 GAAAATCTGgcccagcacggtggctcatgcctgc
i ponAbe2.chr19             C 0 I 42
s nomLeu3.chr10             103309544 34 - 106955855 GAAAATCTGACCCAgcacagtggctcatgcctgt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60600768 34 +  64156825 GAAAATCTggcccagcacagtggctcatgcctgc
i rheMac3.chr19             C 0 I 1826
s macFas5.chr19              55740595 34 +  59248254 aaaaaattagccgggcgcggtggctcacgcctgt
i macFas5.chr19             T 568 I 40
s papAnu2.chr19              47846475 34 +  51301725 GAAAAtctggcccagcacagtggctcatgcctgc
i papAnu2.chr19             C 0 I 42
s chlSab2.chr6               47555419 34 +  50890351 GAAAATCTggcccagcacagtggctcatgcctgc
i chlSab2.chr6              C 0 I 1731
s calJac3.chr22              45909949 34 +  49145316 GGAAATCTggctgggcgcggtggctcacgcctgt
i calJac3.chr22             C 0 I 42
e canFam3.chr1              102637494  0 + 122678785 I

a score=36953.000000
s hg38.chr19_GL949751v2_alt    860284 52 +   1002683 ggccaggagttcgagacc-------agcctggctaacttggtaaaa-----------AGAACGAACAAAA
s panTro4.chr19              59862068 52 +  63644993 ggccaggagttcgagacc-------agcctggctaacttggtaaaa-----------AGAACGAACAAAA
i panTro4.chr19             I 42 C 0
s ponAbe2.chr19              56775259 52 +  60714840 ggccaggagttcgagacc-------agcctggctaacttggtaaaa-----------AGAACGAACAAAA
i ponAbe2.chr19             I 42 C 0
s macFas5.chr19              55740669 54 +  59248254 ggtcaggagatcgagaccatggtgaaaccccgtttctactaaaaat-----------agaaaaaa-----
i macFas5.chr19             I 40 I 2
s papAnu2.chr19              47846551 52 +  51301725 ggccaggagttcaagacc-------agcctggctaacgtggtaaaA-----------AGAacgaaccaaa
i papAnu2.chr19             I 42 I 597
s calJac3.chr22              45910025 62 +  49145316 ggtcgggagtttgagacc-------agcctggccaacatggcaaaaccgtccctactaaaactacaaaa-
i calJac3.chr22             I 42 I 2
e canFam3.chr1              102637494  0 + 122678785 I
e nomLeu3.chr10             103309578  0 - 106955855 C
e chlSab2.chr6               47555453 1731 +  50890351 I
e rheMac3.chr19              60600802 1826 +  64156825 I

a score=27420.000000
s hg38.chr19_GL949751v2_alt    860336 39 +   1002683 ggctgggcacggtggctcacgcctgtaatcccagcactt
s panTro4.chr19              59862120 39 +  63644993 ggccgggcacggtggctcacgcctgtaatcccagcactt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56775311 39 +  60714840 ggccgggcacggtggctcatgcctgtaatcccagcactt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309578 13 - 106955855 --------------------------aatctcagcactt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55740725 39 +  59248254 agctgggcgcagtggcgggcgcctgtagtcccagctact
i macFas5.chr19             I 2 C 0
s calJac3.chr22              45910089 39 +  49145316 agccggacatggtggcccatgcctgtaatcccagctact
i calJac3.chr22             I 2 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47846603 597 +  51301725 I
e rheMac3.chr19              60600802 1826 +  64156825 I

a score=132689.000000
s hg38.chr19_GL949751v2_alt    860375 262 +   1002683 tgggaggccgaggcggatggat--cacgatatcaggagatcgaga-------------------------------ccatcctggctaac-acagtgaaacccctgcctctact-aaaaaaatacaaaaaattagcagggcgtggtggcgggcacctgtagtccc-------------------------------------------------------------------------------------------agctactcgggaggctgaggcaggagaatggtgtgaacccgggaagtggagcttgcagtgagcagagatctcaccattgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaa
s ponAbe2.chr19              56775350 262 +  60714840 tgggaggccgaggcgggtggat--cacgatgtcaggagatcgaga-------------------------------ccatcctggctaac-acagtgaaacacctgtctctact-aaaaaaatacaaaaaattagccgggcatggtggcgggcacctgtagtccc-------------------------------------------------------------------------------------------agctactcgggaggctgaggcaggagaatggtgggaacccgggaggcggagcttgcagtgagctgagatagcgacactgcactccagcctgggtgacagagcgaaactcggtctcaaaaaaaaaaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309591 263 - 106955855 tgggaggctgaggcaggcggat--cacaaggtcaggagatggaga-------------------------------ccgtcctggctaac-acagtgaaacccccgcctctactaaaaaaaatacaaaaaattagccaggcgtagtggcaggcacctgtagtccc-------------------------------------------------------------------------------------------agctactcaggtggctgaggcaggagaatggtgtgaacacgggaggcggagcttgcagtgagcagagatcgcgccattgcactccagcctgggcaacagagccagactccatctcaaaaaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55740764 274 +  59248254 cgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggtgac-agagcaagactcc-gtctca----aaaaaaaaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtccc-------------------------------------------------------------------------------------------agctactcaggagactgaggcaggagaatggcgtgaaacc-----------------ctgagccgagattgcaccactgcactccagcctgggcgacagagccagactccgtctcaaaaaaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45910128 366 +  49145316 tgggaggctgagacaggagaatcgctccaacccaggaggtggaggttgcagtgagccactatact-----------ccagcctgggcaacaagagcgtaactcc-atctc-----aaaaa-----aaaaaaaTGTCAgggcacggtggcccacacctgtaatcccatcactttagtagactgaggtgggtggatcactggagtctggggagttagagaccagcctgagcaacaaggcaaaaccctgtctctactctagctacttggggggctgaggcaggaggatttcttgtgcccagaaagttgaggctgcagtgaggcaagatcacagcactgcattccagcctgagtgacaaggtgagactctgcctcaaaaaaaaaaaaaaaaa
i calJac3.chr22             C 0 I 372
e canFam3.chr1              102637494   0 + 122678785 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47846603 597 +  51301725 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=1998.000000
s hg38.chr19_GL949751v2_alt    860637 5 +   1002683 aaaaa
s ponAbe2.chr19              56775612 5 +  60714840 aaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103309854 5 - 106955855 aaaaa
i nomLeu3.chr10             C 0 I 18
s macFas5.chr19              55741038 5 +  59248254 gaaag
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e calJac3.chr22              45910494 372 +  49145316 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47846603 597 +  51301725 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=1403.000000
s hg38.chr19_GL949751v2_alt    860642 6 +   1002683 aaaaga
s nomLeu3.chr10             103309877 6 - 106955855 AAAAGA
i nomLeu3.chr10             I 18 C 0
s macFas5.chr19              55741043 6 +  59248254 aaaaaa
i macFas5.chr19             C 0 I 1144
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56775617 0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47846603 597 +  51301725 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=13630.000000
s hg38.chr19_GL949751v2_alt    860648 168 +   1002683 aTACAAAGAATGAAGGGTcagtggtatgctagggccagcccgtgctgcctaatgggggcttcctatatgtacctataccaacgtccatgggctgtgatttcacactgatagtacaaaatcacaaggggagtgtttatgccacagaaatcagcaaacacggcagggcgc
s nomLeu3.chr10             103309883 159 - 106955855 ATACAAAGAATGAAGGGTcagtggtatgctagggccagcccgtgctggctaatgggggcttcctacatgtacctataccaacatccatgggctgtgatttcacactgatagtacaaaatcacaa---------tcataccacagaaatcagcaaacacggcagggcgt
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56775617   0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47846603 597 +  51301725 I
e macFas5.chr19              55741049 1144 +  59248254 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=59802.000000
s hg38.chr19_GL949751v2_alt    860816 413 +   1002683 ggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggataacctgaggtcgggagctcaagaccagcctgaccaacacggcgaaac-cccatctctactaaaaatacagaaatta--caggcg--------ggtgcctgtaatcccagctactcaggaggccgagacaggagaatcacacttgaacctgggaggtggaggttgca-tgatctgagatcacgccattgcactcgagcctcggcaacaagaacaagactctgtctcaaacaaacaaaaaaacaaatcagcaaacactacaaaccaagacttcctcgccaccaaccctcagagccacttgtttaacatttcagcccaccactgAATGACACATTGAAAACAAATAGCAAGAGGACAGATATAAATATAACTGTACT
s nomLeu3.chr10             103310042 423 - 106955855 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtccggagctcgagaccagcctgaccaacacagcgaaac-cctgtctctactaaaaatacaaaaattaaccaggcgtggtggcaggtgcctataatcccagctactcaggaggccaagacaggagaatcacacttgaacctgggaggtggaggttgca-tgatccgagatcacgccattgcactcgagcctgggcaacaagaacaaaactctgtctcaaacacacaaaaaaagaaatcagcaaacactacaaaccaagacttcctcgccaccaaccccaagagccacttgtttaacatttcagcccaccactgAATGACACATCGAAAACAAATAGCAGGAGGACAGATATAAATATAACTGTACT
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47847200 307 +  51301725 ggtggctcaggcctggaatcccagcac-ttgggaggccaaggcaggtggatcacctgatgtcagccatttgagaccagcctggcccacgtggaGAAacgcccgtctctactaaaaatatagaagccagccaggcgtagtggcaggaacctgtaatcccaggtacttgggaggctgaggcaagagaat--cgcttgaacccaggaggcagaggttgcagtgagccgagatggcaccattggactccagcctgggcaacaagagcgaaactccgttt-----aaataaatgaattaatta----------------------------------------------------------------------attaaat----------aaataaataa------------------------------
i papAnu2.chr19             I 597 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56775617   0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e macFas5.chr19              55741049 1144 +  59248254 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=225527.000000
s hg38.chr19_GL949751v2_alt    861229 475 +   1002683 ggccgggtatggtggctcaggcctggaatcccagcactttgggaggctgaggcaggtggatcgcctgatgtcaggagtttgagacccgcctggcccacatggtgaaaccccatctctactaaaaatacaaaagctagccaagtgtagtggtaggaacctgtaatcccaggtacgtgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatagcgccattgtactccagcctgggcaacaagagcgaaactctatctcaaaaaaaaa----------------aaaCttagccaggcctggtggaa---catacccgtagtcccagatacttgggaggctgacacaggaggattgtttgagcctacgatttggaggttgcagtgagccagccactgcacgcc-agcctgggtgacagagtgaggccctgtctcaaaaGTAAGTAACTAATggccgggtgcggtggctcac
s nomLeu3.chr10             103310465 491 - 106955855 ggccgggcacggtggctcaggcctggaatctcagcactttgggaggccaaggcaggcagatcacctgacgtcaggagtttgagaccagcctggcccacatggtgaaaccccatctctactaaaaatacagaagctagccagacgtattggcaggaacctgtaatcccagggacttgggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccgagatggtgccattgtactacagcctgggcaacaagagcaaaactccttctcaaaaaaaaataataataataataataaTCttagccaggcctggtggag---catacctgtagtcccagatacttgggaggctgacacaggaggatcgtttgagcttgcgatttggagattgcagtgagccagccactgcactcc-agcctgggtgacagagtgaggcactgtctcaaaaGTAAGTAACTAATggctgggcgcagtggctcac
i nomLeu3.chr10             C 0 I 759
s macFas5.chr19              55742193 486 +  59248254 ggccaggtgcagtggctcacgcctgtaatcccagcacgttgggaggcggaggcagcaggatcacctgatgtcagacgtttgagaccagcctggcccacgtggagaaaccccgtctctactaaaaatatagaagccagccaggtatagtggcaggaacctgtaatcccaggtacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatggcgtcattgtactccagcctgggcaacaagagcgaaactctgtctcaaaaaaaaa-----aaaaaaaaaaaaatcgtagccaggcctggtggtggtacatgcctgtagtcccagatacttgggaggctgacccaggagaatcgtctgagcctgcgatttggaggttgcagaa----agccactgcactccttgcctgggtgacagagtgaggccctgtctcaaaaGTAAGTAACTAATggctgggcgcggtggctcac
i macFas5.chr19             I 1144 C 0
s papAnu2.chr19              47847507 486 +  51301725 ggccaggtgcagtggctcacgcccgtaatcccagcacgttgggaggcggaggcagcaggatcacctgatgtcagacgtttgagaccagcctggcccacgtggagaaaccccgtctctactaaaaatatagaagccagccaggtgtagtggcaggaacctgtaatcccaggtacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatggcgtcattgtactccagcctgggcaacaagagcgaaactctgtctcaaaaacaaa-----acaaaacaaaaaatcgtagccaggcctggtggtggtacatgcctgtagtcccagatacttgggaggctgacccAGGAGAATCGTCTGAGCCTGCGAtttggaggttgcagag----agccactgcactccttgcctgggtgacacagtgaggccctgtctcaaaactaagTAActaatggctgggcgcggtggctcac
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56775617   0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=65923.000000
s hg38.chr19_GL949751v2_alt    861704 260 +   1002683 gcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtc---aggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaacaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgg-gaggctgaggcaggagaatggcgggaacccgg--gaggcggagcttgcagtgagcggagatcgcgccaccgcactccagcctgggcgacagagcgagactccgtct
s nomLeu3.chr10             103311715 219 - 106955855 gcctgtaatcccagcactttaggaggccaaggcaggcggatcacgaggtc---------------------------------------------tctactaaaaatacaaaaaattaaccaggcatggtggcaggcgcctgtagtcccagctactcagagaggctgaggcaggagaatggcgggaacccgg--gaggcggagcctgcagtgagccgagatggagtcactgcactccagcctgggcgacagagcgagactccgtct
i nomLeu3.chr10             I 759 I 20
s macFas5.chr19              55742679 219 +  59248254 acctgtaatcccaacactttgggaggctgaggcagcaggatcccttgaatctggggagttggagaccagcctgagaagcaaggccaaaacctatctctact----------------------------------------------ctagctacttgg-ggagctgaggcaggaggatttcttgagcccggaaaaagctgaggctgcagtgagtcaagatcgtactactgcattctagcctgggtgacaaagtgagactctgcct
i macFas5.chr19             C 0 I 26
s papAnu2.chr19              47847993 219 +  51301725 acctgtaatcccaacacttcgggaggctgaggcagcaggatcccttgaatctggggagttggagatcagcctgagcagCAAGGCCAAAACCTATCTCTACT----------------------------------------------ctagctacttgg-ggagctgaggcaggagaatttcttgagcccagaaaaagctgaggctgcagtgagtcaagatcgcactactgcattctagcctgggtgacaaagtgagattctgcct
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56775617   0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=-125.000000
s hg38.chr19_GL949751v2_alt    861964 1 +   1002683 G
s papAnu2.chr19              47848212 1 +  51301725 c
i papAnu2.chr19             C 0 I 26
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56775617 0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e nomLeu3.chr10             103311934 20 - 106955855 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e macFas5.chr19              55742898 26 +  59248254 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    861965 18 +   1002683 GGTTGGGGGGGCGGGGGG
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56775617  0 +  60714840 C
e calJac3.chr22              45910494 372 +  49145316 I
e nomLeu3.chr10             103311934 20 - 106955855 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47848213 26 +  51301725 I
e macFas5.chr19              55742898 26 +  59248254 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159  0 +  63644993 C

a score=182.000000
s hg38.chr19_GL949751v2_alt    861983 2 +   1002683 AA
s ponAbe2.chr19              56775617 2 +  60714840 aa
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e calJac3.chr22              45910494 372 +  49145316 I
e nomLeu3.chr10             103311934 20 - 106955855 I
e chlSab2.chr6               47555453 1731 +  50890351 I
e papAnu2.chr19              47848213 26 +  51301725 I
e macFas5.chr19              55742898 26 +  59248254 I
e rheMac3.chr19              60600802 1826 +  64156825 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=8211.000000
s hg38.chr19_GL949751v2_alt    861985 4 +   1002683 GAGG
s ponAbe2.chr19              56775619 4 +  60714840 GAGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103311954 4 - 106955855 GAGG
i nomLeu3.chr10             I 20 C 0
s rheMac3.chr19              60602628 4 +  64156825 GAGG
i rheMac3.chr19             I 1826 C 0
s papAnu2.chr19              47848239 4 +  51301725 gagg
i papAnu2.chr19             I 26 C 0
s chlSab2.chr6               47557184 4 +  50890351 GAGG
i chlSab2.chr6              I 1731 C 0
s calJac3.chr22              45910866 4 +  49145316 GAGG
i calJac3.chr22             I 372 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e macFas5.chr19              55742898 26 +  59248254 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=205284.000000
s hg38.chr19_GL949751v2_alt    861989 107 +   1002683 CAGCCTGGAAAATAAATAACAGAAAAAGTGACTTGCCAAGCCCGGGTGCTGATAGAGGTGGACAGCTTTACCCTTGGAGGGAACAGCAAATC-TTTTTCCCCAGCTGT
s ponAbe2.chr19              56775623 107 +  60714840 CACCCTGGAAAATAAATAACAGAAAAAGTGACTTGCCAAGCCCGGGTGGTGATAGAGGTGGACAGCTTTACCCTTGGAGGGAACAGCAAATC-TTTTTCCCCAGCTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103311958 104 - 106955855 CAGCCTGGAGAATAAATAACAT----TGTGACTTGCCAAGCCTGGGTGGTGACAGAGGTGGACAGCTTTACCCTTGGAGGGAACAGCAAATCTTTTTTCCCCAGCTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60602632 104 +  64156825 CAGCCTGGAAAATAAATAACAG--AAAATGACTTGCCAAGCCCAGGTGGTGATAGAGGTGGACAGCTTTACCCTTGCAGGGAACAGCAACT--TTTTTCCCCAGCTGT
i rheMac3.chr19             C 0 I 1680
s macFas5.chr19              55742924 104 +  59248254 CAGCCTGGAAAATAAATAACAG--AAAATGACTTGCCAAGCCCAGGTGGTGATAGAGGTGGACAGCTTTACCCTTGGAGGGAACAGCAACT--TTTTTCCCCAGCTGT
i macFas5.chr19             I 26 C 0
s papAnu2.chr19              47848243 103 +  51301725 cagcctggaaaataaataacag--aaaatgattTGCCAAGCCCAGGTGGTGATAGAGGTGGACAGCTTTACCCTTGGAGGGAACAGCAGC---TTTTTCCCCAGCTGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47557188  99 +  50890351 CAGCCTGGA----AAATAACAG--AAAATGACCTGCCAAGCCCAGGTGGTGATAGAGGTGGACAGCTTTACCCTTGGAGGGAACAGCAAC---TTTTTCCCCAGCTGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45910870 101 +  49145316 CAGGCTGGAAAACGAA-AACGG--AAAGTGACTGGCCAAGCCCAGGTGGTGGCAGAAGTGGACAGCTTTACCCT---GAGGAAGGGCAGCTC-TTTCTCCTCAGCTTT
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=4011.000000
s hg38.chr19_GL949751v2_alt    862096 2 +   1002683 GA
s ponAbe2.chr19              56775730 2 +  60714840 GA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103312062 2 - 106955855 GA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55743028 2 +  59248254 GA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47848346 2 +  51301725 GA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47557287 2 +  50890351 GA
i chlSab2.chr6              C 0 I 1464
s calJac3.chr22              45910971 2 +  49145316 GA
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e rheMac3.chr19              60602736 1680 +  64156825 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=4899.000000
s hg38.chr19_GL949751v2_alt    862098 5 +   1002683 CGtgt
s ponAbe2.chr19              56775732 5 +  60714840 GGtgt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103312064 5 - 106955855 GGtgt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55743030 5 +  59248254 GGTAT
i macFas5.chr19             C 0 I 1534
s papAnu2.chr19              47848348 5 +  51301725 GGTAT
i papAnu2.chr19             C 0 I 1593
s calJac3.chr22              45910973 5 +  49145316 GGTAT
i calJac3.chr22             C 0 I 1761
e canFam3.chr1              102637494 0 + 122678785 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e rheMac3.chr19              60602736 1680 +  64156825 I
e panTro4.chr19              59862159 0 +  63644993 C

a score=151294.000000
s hg38.chr19_GL949751v2_alt    862103 679 +   1002683 ggggaaaaggaggacagatcagactgttactgtgtctatgtagaaagaaatagacataagagactccattttgttctgtactaagaaaaattcttctgccttgagatgctgttaacctgtaaccctagccccaaccctgtgctcccagaaacatgtgctgtgtcacac-gtgggtttagggctatgcaggatgtgctttgttaaacagatgcttgaaggcagcatgcttgttaaaagtcatcaccactctctaatctcaagcacccagggacacaatacactgcggaaggctgcagggacctctgcctagaaaagccaggtattgtccaaagtttctccccatgtgatagcctgagataaggcctcgtgggaagggaaagaccagaccgtaccccagcccgacacccgtaaagggtctgtgctgaagaggattagtataagaggaaggcctttttgcagt-----taagaggaaggtatctgtctcctgctcgtccctgggcaatggaatgtctcggtgtaaaacccgatggtatgttccatccaccgagataggggaaaaccgccttagggctggaggtgacacatgctggcagcaatactgctctttaatgcaccagatatgtttatgtatgagcacatc-aaggcacagcacatttcctaaccttgtttatgacac--agacatt
s ponAbe2.chr19              56775737 678 +  60714840 ggagaaaagaagtagaaatcagactgttactgtgtctatgtagaaagaagtagacataagagactccattttgttctgtactaagaaaaattcttctgccttgagatgctgttaacctgtaaccctacccccaaccctgtgctcccagaaacatgtgctgtgtcatttaatgggtttacggctatgcaggatgtgctttgttaaacaaatgcttgaaggcagtatgcttgttaaaagtcatcacca--ctctaatctcaagcacccagggacacaaaacactgcggaaggccgcagggacttctgcctaggaaagccaggtactgtccaaggtttctccccgtgtgatagcctaagatatggcctcctgggaagggaaagacctgaccttcccctagcccgacacccgtaaagggtctgtgcttaagaggattagtaaaagaggaagccctctttgcagt-----taagaggaaggcatctgtctcctgctcgtccctgggcaatggaatgtctcggtgtaaaacccgatggtatgtttcttctactgagatagaagaaaaccgccttagcactggaggtgggacatgctggcggcaatactgctctttaatgcaccag--atgtttatgtatgtgaacatcaaaagtaca-cacattttctaaccttgtttatgacacagagacatt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103312069 657 - 106955855 ggggcaaaggag---agatcagactgttactgtgtctatgtagaaagaagtagacataagagactccattttgttctgtactaagaaaaattcttctgccttgagatgctgttaacctgtaaccctacccccaaccctgtgcacgcagaaacatgtgctgtgtcgtttaatggatttagggctatgcgggatgtgctttgttaaacaaatgcttgaaggcagtatgcttgttaaaagtcatcaccactctctaatctcaagcacccagggacacaaaacac-gcagaaggccgcagggacctctgcctaggaaagccaggtattgtccaaggtttctccccatgtgatagtctgaaacatggcctcgtgggaagggaaagacctgaccgtcccctag-------------------ctgtg-----gaggattagtgaaagaggaagacttctttgcagttgagataagaggaaggcatctgtctcctgctcatctgtgggcaatagaatgtctc-gtgtaaaactcgattgtatgttccatctactgagatagaagaaaaccgccttagggctggaggtcagacatgctggtggcaatactgctctttaatacaccagctatgtttatgtatgtgcacatcaaagcgacaccatattttctaagcttgtttatgacag--agacatt
i nomLeu3.chr10             C 0 I 246
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45910978 1761 +  49145316 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e papAnu2.chr19              47848353 1593 +  51301725 I
e macFas5.chr19              55743035 1534 +  59248254 I
e rheMac3.chr19              60602736 1680 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=40282.000000
s hg38.chr19_GL949751v2_alt    862782 520 +   1002683 tgctcacatgttttcctgctgaccctctccccactgttaccctattgtcctgccacatccccgtctccgagatggtagagataatgaccaataaatactgaaggaactcagagacccggccggcgcgggtc-------tcctga---------------gcccacttttctttctgtgtactttgtctctgtgtctctttcttttctcagtctctcgtcccacctgacaagaaacacccacaggtgtggaggggcaggccaccccttcaGTGAGGTATAATTACATATATCCTattttaggatggagcaggaagagcatgagagcccaggagttccagaccagcctgggcgacacaaggagaccttgtctctaTTTTTTAAGTAtttttaaagtaatatatacaacgtttacttgtcaaagtgtacagcatggagcgatgttatatatacagtgaaatgattaccacaatccagctaattaacatatccactgcttcatatagttgcctttcgtttttgcagtgacaacgcttgatgtactt
s ponAbe2.chr19              56776415 535 +  60714840 tgttcacatgttctccagctgaccctctccccactattaccctattgtcctgccacacccc--tctctgagatggtagagataatgatcaataaatactgaaggaactcag-gaccaggctggcgcgggtcctccgtatgctgagcgccggtccccagggcccacttttctttctctatattttgtctctgtgtc----tcttttctcagtctctcatcccacccgacaagaaacacctacaggtgtggaggggcaggccaccccttcaGTGAGGTATAATTACATATATACAattttaggactgagcaggaagagcatgtgagcccaggacctccagaccagcctgggcaacacaaggagaacttgtctctaTTTTTTAAGTAttttaaaagtaatatatacaatgtttacttatcaaagtgtacagcatggagcgatgttatatatacagtgaaatgattaccacaatccagctaattaacatatctgctgcctcatatagttgcctttcctttttgcagtgagaacgcttgatctactt
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e papAnu2.chr19              47848353 1593 +  51301725 I
e macFas5.chr19              55743035 1534 +  59248254 I
e rheMac3.chr19              60602736 1680 +  64156825 I
e panTro4.chr19              59862159   0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    863302 59 +   1002683 agaaaaattcaggGTTTTTTggccaggcacggtggctcacgcctgtaatcccagcacta
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56776950  0 +  60714840 C
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e papAnu2.chr19              47848353 1593 +  51301725 I
e macFas5.chr19              55743035 1534 +  59248254 I
e rheMac3.chr19              60602736 1680 +  64156825 I
e panTro4.chr19              59862159  0 +  63644993 C

a score=23363.000000
s hg38.chr19_GL949751v2_alt    863361 268 +   1002683 tgggaggccgaggcgggcagatcacaaggtgaggagctcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcttgaacctgggaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcgagtgagactccctctcaaaaaaaaaaaaaaaaagaaaagaaa
s panTro4.chr19              59862159 261 +  63644993 tgggaggccgaggcgggcagatcacaaggtgaggagctcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaaattagccaggcatggtggcgggcgcctgtagccccagctacttgggaggctgaggcaggataatggtgtgaacctgggaggcggagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgagtgagactccctctcaaaaaaaaaaaaaaa-------gaaa
i panTro4.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56776950   0 +  60714840 C
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e papAnu2.chr19              47848353 1593 +  51301725 I
e macFas5.chr19              55743035 1534 +  59248254 I
e rheMac3.chr19              60602736 1680 +  64156825 I

a score=315912.000000
s hg38.chr19_GL949751v2_alt    863629 1247 +   1002683 agaaaaaTTCAGGGttttttttttctttttcagaa--agtcttgctctgtcgcccaggctggagtgcaatggtgcgaggcttaccacaacctcctcttcccgggttcaagcgattctcctgcctc-ggcctcccaagtagctgggattacaggtatgccccaccacacctaattttttttgtatttttagtacaaacggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccacctcagcctcccaaagtgctgggattacaggtatgagccaccaggcctggccAAGTATTTTTTTTCCCAAGTACAtttttttcttttttt--cttttttttgagatggagtctccctctgttgcccaggctggagtgcagtggcacaatctcgactcactgcaacctccacctcccaggttcaagtgattctagtgcctcagcctctcaagaagctgggattacaggcgcaccgcatcacgccgggctagtttttgtatttttagtagagacagggtttcttgtttttttctgagatggagtcttgctctgtcacccaggctggagtgcagtggcgcgatctgggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactatgcccagctaattttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatcttctgacctcgtgatccgcccgcctcggcctcccatagtgctgggattacaggcgtgagccaccgcgcccggccgagacagggtttctctatgttggccaggctggcctcgaactcctgacctcagctgatccacccgcctcggcctcccaaagtgctgggatcacaggcgtgagccaccgcatctggccATTTACAttttttttttttttt--gatgcagcatttcactctggttgcccaggctggagtgcagtggcgcaatctcagctcaccgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacgcccagctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcccggcctcaggtgatctgaaagtgctgggattacaggcgtgagccaccgcgcccagccTACtttttttttttttt-------------
s panTro4.chr19              59862420 1219 +  63644993 agaaaaaTTCAGGGttttttttttctttttcagaa--agtcttgctctgtcgcccaggctggagtgcaatggtgcgaggcttaccacaacctcctcttcccgggttcaagcgattctcctgcctc-agcctcccaagtagctgggattacaggtatgcgccaccacacctaattttttttgtatttttagtacaaacggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccacctcagcctcccaaagtgctgggattacaggtatgagccaccaggcctggccAAGTATTTTTTTTCCCAAGTACAtttttttttcttttt-----ttttttgagatggagtctccctctgttgcccaggctggagtgcagtggcacaatctcgactcactgcaacctccacctcccaggttcaagtgattctagtgcctcagcctctcaagaagctgggattacaggcgcaccgcatcacgcctggctagtttttgtatttttagtagagacagggtttcttggttttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggcgcgatctgggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactatgcccagctaattttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatcttctgacctcgtgatctgcccgcctcggcctcccatagtgctgggattacaggcgtgagccactgcacccggccgagacagggtttctctatgttggccaggctggcctcgaactcctg----------------------------------------GGATCACAGGCGTGAGCAACCGCATCTGGCCATTTACAtttttttttttttttttgatgcggcatttcactctggttgcccaggctggagtgcagtggcgcaatctcagctcaccgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacgcccagctaattttgtatttttagcagagatggggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatctgaaagtgctgggattacaggcgtgagccaccgcgcccagccTACttttttttttttttttttttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56776950 1253 +  60714840 agaaaaattcaggGtttcttttttctttttcagaaagagtcttgctctgtcgcccaggctggagtgcaatggtgcgaggcttaccacaacctcctcctcccaggttcaagcgattctcctccctcaggcctcccaagtaggtgggattacaggcatgcgccatcacacctaattttttttgtatttttagtacagacggggtttcaccatgttggccaggctgatcttgaactcctgacctcaggtgatctgcccgcctcagcctccgaaagtgctgggattacaggtatgagccaccaggcccggccAAGTA-TTTTTTTCCCAAGTACAtttttttcttttttttttttttttttgagacggagtctccctctgttgccca-gctggagcgcagtggcacaatctccactcactgcaacctccacctcccaggttcaagtgattctagtgcctcagcctctcaagaagctgggattacaggcgcactgcgtcacgcctggctagtttttgtatttttagtagagacagcatttctggtttttttttgagacagagtcttgctctgtcccccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcttcagcctcccgagtagctgggactacaggcgcctgccactatgcccatctaattttttttgtatttttagtagagacagggtttcaccgtgttacccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccgagacagggtttctctatgttggccaggctggcctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggatcacagttgtgaccaaccgcatctggccATCTACAttttttttttttttg-ggatgcgccgtttcactctggttgcccaggctggagtgcagtggctcaatctcagctcaccgcaacctctgcctcccgggttcaggtgattctcctgcctcagcctcccaagtagctgggattacaggcatgtgccaccacgcccagctaattttgcatttttaatagagatggggtttctccatgttggtcaggctggtctcaaactcccaatctcaggtgatctgaaagtcctgggattacaggtgtgagccaccatgcccagccTACtttttttttttttt-----------tt
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              102637494    0 + 122678785 I
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726  246 - 106955855 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e papAnu2.chr19              47848353 1593 +  51301725 I
e macFas5.chr19              55743035 1534 +  59248254 I
e rheMac3.chr19              60602736 1680 +  64156825 I

a score=2730.000000
s hg38.chr19_GL949751v2_alt    864876 3 +   1002683 aaa
s panTro4.chr19              59863639 3 +  63644993 aaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56778203 3 +  60714840 aaa
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55744569 3 +  59248254 aaa
i macFas5.chr19             I 1534 C 0
s papAnu2.chr19              47849946 3 +  51301725 aaa
i papAnu2.chr19             I 1593 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47557289 1464 +  50890351 I
e rheMac3.chr19              60602736 1680 +  64156825 I

a score=18023.000000
s hg38.chr19_GL949751v2_alt    864879 18 +   1002683 cagggtcttcatctcatc
s panTro4.chr19              59863642 18 +  63644993 cagggtcttcatctcatc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56778206 18 +  60714840 cagggtctccatctcatc
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55744572 17 +  59248254 cagggttacc-tctcatc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47849949 17 +  51301725 cagggtcacc-tctcatc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47558753 18 +  50890351 cagggtcaccatctcatc
i chlSab2.chr6              I 1464 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e rheMac3.chr19              60602736 1680 +  64156825 I

a score=968054.000000
s hg38.chr19_GL949751v2_alt    864897 574 +   1002683 caggctggagtgcagtggctcaatcacacctcattgcagcccccacctcctggctcaggtgatcctcccacctcaccccacaagtagcttggacacagcacaaggtctggccttctttgttttttgagacggagtcgcactctgtctcccaggctggagtgcagtggcgcgatctcagctcattgcaacct-ccccctcctaggtttaagctattctcctgcctcaaccttccaagtaactgggattacaggcatgcaccaccacacctggctaatttttgtgtttttagtagagacagggtttcaccattttgggcaggctggtctcaaacttctggcctcaagtgatccacccgcctcggcctcccaaagtgttgggataacaggcatgaaccactgtgcctggccttatatttttttgtaatgacagagttttaccatgttgcccaggctagtctcaatctcctgaactcCTCTAAACTATATTTG-AATAGAAGTCCTTAAGACA---TTAggccaggcgtggtggctcacacctggaatcccagcactttgggaggccgaggcagacagattac
s panTro4.chr19              59863660 575 +  63644993 caggctggagtgcagtggctcaatcacacctcattgcagcccccacctcctggctcaggtgatcctcccacctcaccccacaagtagcttggacacagcacaaggtctggccttctttgttttttgagatggagtcgcact--gtctcccaggctggagtgcagtggcacgatctcagctcattgcaacct-ccccctcctaggtttaagctattctcctgcctcaaccttccaagtaactgggattacaggcatgcaccaccacacctggctaatttttgtgtttttagtagagacagggtttcaccattttgggcaggccagtctcgaactcctggcctcaagtgatccacccgcctcggcctcccaaagtgttgggataacaggcatgaaccactgtgcctggccttgtatttttttgtagtgacagagttttaccatgttgcccaggctagtctcaatctcctgaactcCTCTAAACTATATTTG-AATAGAAGTCCTTAAGACAACATTAggccaggcacggtggctcacacctggaatcccagcactttgggaggccgaggcagacggattac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56778224 578 +  60714840 caggctggagtgcagtggctcaatcacacctcattgcagcccccacctgccggctcaggtgatcctcccacctcaccccacaagtagcttggacacagcacaaggtctggccttctttgttttttgagacggggtcccactctgtctcccaggctggagtgcagtggtgagatctcagctcattgcaacct-ccccctcccaggtttaagctattctcctgcctcaactttcgaagtaactgggattacaggcatgcaccaccatacctggctaatttttgtgtttttagtagagatggggtttcaccattttgggcaggctggtctcgaactcctggcttcaagtgatccacccgcctcggcttcccaaagtgttgggataacaggcatgaaccactgtgcctggccttgtatttttttgtagagacagagttttaccatgttgcccaggctagtctcaatctcctgagctcCTCTAAACTATATTTGAAATAGAAGTCCTTAAGACAACATTAggccaggtgcggtggctcacgcctggaatcccagcactttgggaggccgaggcagacggattac
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60604416 516 +  64156825 caggctggagtgca-gtgcacaatcacacctcattgcagcccccacctcccgactcaggtgatcctcccacctcaccccacaagtagcctggacacagcacgcggtctggccttctttgttttttgagacggagtctccctctgtgtcccagactggagtgcagtggcacgatctcagctctctgcaacctccccccttcccggtttaagccattctcctgcctcaaccttccaactaacagggattacaggcatgcaccactacacctggctaacttttgtgtttt----------------------------------------------------------tgattcgcccatctcggcctcccaaagtgttgggataacaggcatgagccattgtgactggccttgt-cttttttggagagac--agttttaccatgttgcccagactagtctcaaactcctgagctcCTCTAAACTATATTTG-AATAGAAGTCCTTAAGACAACATTAggccaggcgcggtggctcacgcctggaatcccagcactttgggaggccgaggcaggcggatcac
i rheMac3.chr19             I 1680 C 0
s macFas5.chr19              55744589 573 +  59248254 -aggctggagtgca-gtgcacaatcacacctcattgcagcccccacctcccgactcaggtgatcctcccacctcaccccacaagtagcctggacacagcacgcggtctggccttctttgttttttgagacggagtctccctctgtgtcccagactggagtgcagtggcacgatctcagctcactgcaacctccccccttccaggtttaagccattctcctgcctcaaccttccaactaacagggattacaggcatgcaccactacacctggctaacttttgtgtttttagtagagacggggtttcaccattttgggcaggctagtctcgaactcctggcctcaaatgattcgcccatctcggcctcccaaagtgttgggataacaggcatgagccattgtgactggccttgt-cttttttggagagac--agttttaccatgttgcccagactagtctcaaactcctgagctcCTCTAAACTATATTTG-AATAGAAGTCCTTAAGACAACATTAggccaggcgcggtggctcacgcctggaatcccagcactttgggaggccgaggcagacggatcac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47849966 571 +  51301725 -aggctggagtgcaggggcacaatcacacCTCattgcagcccccacctcccgactcaggtgatcctcccacctcacctcacaAGTAGCCTGGACACAGCACGAGGTctggccttctttgttttttgagacggagtctccctctgtgtcccagactggagtgcagtggcgcgatctcagctcactgcaacctccccccttccaggtttaagccattctcctgcctcaaccttccaactaattgggattacaggcatgcaccactacacctggctaacttttgtgtttttagtagagacggggtttcaccattttgggcaggctggtctcgaactcctggcctcaaatgattcgcccacctcggcctcccaaagtgttgggataacaggcatgagccactgtgactggccttgt-cttttttggagagac--agttttaccatgttgcccagactagtctcaaactcctgagctcctcTAAACTATATTTG-AATAGAAGTCCTTAAG---acattaggccaggcgcggtggctcacgcctggaatcccagcactttgggaggccgaggcagacggatcac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47558771 571 +  50890351 -aggctggagtgcagtggcacaatcacacctcattgcagcccccacctcccggctcaggtgatcctcctacctcaccccacaagtagcctggacacagcatgaggtccggccttctttg--ttttgagacggagtctccctctgtgtcccagactggagtgcagtggcgcgatctcagttcactgcaacct-ccccctcccaggtttaagccattctcctgcctcaaccttccaactaactgggattataggcatgcaccaccacacctggctgatttttgtgtttttagtagagacggggtttcaccattttgggcaagctggtctcgaactcctggcctcaaatgatttgcccacctcggcctcccaaagtgttgggataacaggcatgagccactgtgactggccttgt-cttttttggagagac--agctttaccatgttacccagactagtctcaaactcctgagctcCTCTAAACTATATTTG-AATAGAAGTCCTTAAGACAACATTAggccaggcgcggtggctcacgcctggaatcccagcactttgggaggccgaggcagacggatagc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45910978 1761 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=462384.000000
s hg38.chr19_GL949751v2_alt    865471 232 +   1002683 ctaaagtcaggagttcaagaccagcctggccaacatggtgagaccccgtctctactaaaaatacaaaaattagctgggcatggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgggtgaacccaggaggcggagtttgcagcgaaccaagatcacgccactgcactccagcctgggcgacagagggagactccgtctcaaaaaaaaaaaa--------------
s panTro4.chr19              59864235 232 +  63644993 ctaaagtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggcggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgggtgaacccaggaggcggagtttgcagtgaaccaagatcacgccactgcactccagcctgggcgacagagggagactccatctcaaaaaaaaaaaa--------------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56778802 232 +  60714840 ctaaagtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaatattagccaggcgtggtggcacatgcctgtaagcccagctactcaggaggctgaggcaggagaatggcggctgaaccctggaggcggagcttgcagtgagcccagatcgcgccactgcactccagcctgggcgacagagggagactccgtctcaaaaaaaaaaaa--------------
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60604932 220 +  64156825 ctaaagtcaggagttcaagaccagcctagccaacatggtgaaaccctgtgtctactaaaaatacaaaaattagctgggcgtagtggcgggtgcctgtaatccccgctactcaggagactgaggcaagaaa----------atcccaggaggcggaggttgcagtgagcagagatcatgccactgtacgcgagcctgggca--agagtgagactctgactaaaaaaaaaaaaa--------------
i rheMac3.chr19             C 0 I 17
s macFas5.chr19              55745162 220 +  59248254 ctaaagtcaggagttcaagaccagcctagccaacatggtgaaaccctgtgtctactaaaaatacaaaaattagctgggcgtggtggcgggtgcctgtaatcccagctactcaggagactgaggcaagaaa----------atcccaggaggcggaggttgcagtgagcagagatcacgccactgtacaccagcctgggca--agagtgagactctgtctaaaaaaaaaaaaa--------------
i macFas5.chr19             C 0 I 6
s papAnu2.chr19              47850537 220 +  51301725 ctaaagtcaggagttcaagaccagcctggccaacatggtgaaaccctgtgtctactaaaaatacaaaaattagctgggcgtggtggcgggtgcctgtaatcccaggtactcaggagactgaggcaagaaa----------atcccaggaggcagaggttgcagtgagcagagatcatgccactgcacaccagcctgggca--agagtgagactctgtctaaaaaaaaaaaaa--------------
i papAnu2.chr19             C 0 I 3
s chlSab2.chr6               47559342 229 +  50890351 ctaaagtcaggagttcaagaccagcctggccaacatggtgaaaccctgtgtctactaaaaatacaaaaattagctgggcgtggtggcgggtgcctgtaatcccagctactcaggagactgaggcaagaaaa-atcacttgatcccaggaggcggaggttgcagtgagcagagatcatgccactgcactccagcctgggca--agagtaagactctgtcttaaaaaaaaaaaa--------------
i chlSab2.chr6              C 0 I 22
s calJac3.chr22              45912739 244 +  49145316 ctgaggtcaggaattcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaactagccaggtgtggtgatgcgtgcctgttatcacagctactcgggaggctaagacagaaga--atcactggaacccgagaggtggagtttacagtgggcggagatcccaccactgcactccagcctgggtgacggagtgagactctatctccaaaaaaaaaaaaaaaaaaaaaaaaa
i calJac3.chr22             I 1761 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=1368.000000
s hg38.chr19_GL949751v2_alt    865703  8 +   1002683 a---------TCAAAGA
s panTro4.chr19              59864467 17 +  63644993 aaaaaaaaaaTCAAAGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56779034 10 +  60714840 a-------aTTCAAAGA
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55745388  8 +  59248254 ---------agaaaaga
i macFas5.chr19             I 6 I 10
s papAnu2.chr19              47850760  8 +  51301725 ---------agaaaaga
i papAnu2.chr19             I 3 I 10
s chlSab2.chr6               47559593  8 +  50890351 ---------agaaaaga
i chlSab2.chr6              I 22 I 10
s calJac3.chr22              45912983  8 +  49145316 ---------aTCAAAAG
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e rheMac3.chr19              60605152 17 +  64156825 I

a score=176666.000000
s hg38.chr19_GL949751v2_alt    865711 81 +   1002683 TCCTTCCAGCATCCTCGCACCAACCATTAAGGCTT-GGGAAGGGCTA---TGGTGGAAACTCAACCAATAGCTTCTTCTCCCTTA
s panTro4.chr19              59864484 81 +  63644993 TCCTTCCAGCATCCTCGCACCAACCATTAAGGCTT-GGGAAGGGCTA---TGGTGGAAACTCAACCAATAACTTCTTCTCCCTTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56779044 84 +  60714840 TCCTTCCAGCACCCTCACACCAACCATTAAGGCTT-GGGAAGGGCTATGGTGGTGGAAACTCAACCAATAATTTCTTCTCCCTTA
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60605169 82 +  64156825 TCCTTCCAGCATCCTCACACCAACCATTAAGGCTTAGGGAAGGGCTA---TGGTGGAAACTCAACCAATAATGTCTTCTCCCTTA
i rheMac3.chr19             I 17 C 0
s macFas5.chr19              55745406 81 +  59248254 TCCTTCCAGCATCCTCACACCAACCATTAAGGCTT-GGGAAGGGCTA---TGGTGGAAACTCAACCAATAATGTCTTCTCCCTTA
i macFas5.chr19             I 10 C 0
s papAnu2.chr19              47850778 81 +  51301725 tcctTCCAGCATCCTCACACCAACCATTAAGGCTT-GGGAAGGGCTA---TGGTGGAAACTCAACCAATAATGTCTTCTCCCTTA
i papAnu2.chr19             I 10 C 0
s chlSab2.chr6               47559611 81 +  50890351 TCCTTCCAGCATCCTCACACCAACCATTAAGGCTT-GGGAAGGGCTA---TGGTGGAAACTCAACCAATAGTGTCTTCTCCCTTA
i chlSab2.chr6              I 10 C 0
s calJac3.chr22              45912991 67 +  49145316 --------------TCACACCAACCGTCAGGGGTT-GGGAAGGGCCA---TGGGGGAAACTCAACCAATAATTACTCCTCCCCGG
i calJac3.chr22             C 0 I 259
e canFam3.chr1              102637494  0 + 122678785 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=12834.000000
s hg38.chr19_GL949751v2_alt    865792 6 +   1002683 AACGAG
s panTro4.chr19              59864565 6 +  63644993 AACGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56779128 6 +  60714840 AACGAG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60605251 6 +  64156825 AATGAG
i rheMac3.chr19             C 0 I 120
s macFas5.chr19              55745487 6 +  59248254 AACGAG
i macFas5.chr19             C 0 I 119
s papAnu2.chr19              47850859 6 +  51301725 AACGAG
i papAnu2.chr19             C 0 I 119
s chlSab2.chr6               47559692 6 +  50890351 AACGAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45913317 6 +  49145316 AAAGAA
i calJac3.chr22             I 259 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=781.000000
s hg38.chr19_GL949751v2_alt    865798 1 +   1002683 A
s panTro4.chr19              59864571 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56779134 1 +  60714840 G
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55745612 1 +  59248254 G
i macFas5.chr19             I 119 C 0
s papAnu2.chr19              47850984 1 +  51301725 G
i papAnu2.chr19             I 119 C 0
s chlSab2.chr6               47559698 1 +  50890351 G
i chlSab2.chr6              C 0 I 119
s calJac3.chr22              45913323 1 +  49145316 G
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e rheMac3.chr19              60605257 120 +  64156825 I

a score=102333.000000
s hg38.chr19_GL949751v2_alt    865799 50 +   1002683 AGACAAAGAAATCGATGCAAGAACCAGCACTCACCTCCCTCAGGTCAGGT
s panTro4.chr19              59864572 50 +  63644993 AGACAAAGAAATCGATGCAAGAACCAGCACTCACCTCCCTCAGGTCAGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56779135 50 +  60714840 AGACAAAGAAATCGATGCAGGAACCAGCACTTACCTCCCTTAGGTCAGGT
i ponAbe2.chr19             C 0 I 121
s rheMac3.chr19              60605377 50 +  64156825 AGACAAATAAATTGATTCAAGAACCAGCACTCACCTCCCTTAGGTCTGGA
i rheMac3.chr19             I 120 C 0
s macFas5.chr19              55745613 50 +  59248254 AGACAAATAAATTGATTCAAGAACCAGCACTCACCTCCCTTAGGTCTGGA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47850985 50 +  51301725 AGACAAATAAATTGATTCAAGAACCAGCACTCACCTCCCTTAGGTCTGGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47559818 50 +  50890351 AGACAAATGAATTGATTCAAGAACCAGCACTCACCTCCCTTAGGTCTGGA
i chlSab2.chr6              I 119 C 0
s calJac3.chr22              45913324 49 +  49145316 AGACGAAGAAACTGATGCAAGCATCAGCACTCACCTCCGT-AGAGCAGGA
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=2128422.000000
s hg38.chr19_GL949751v2_alt    865849 1072 +   1002683 CTTGCTTCCAGCCTGTGTTTCCTGCAAAGGAAACGGATAAAAAG-------GGGAGGTCT----CTGGCCCTTGGTACGCTAGGTGGAGAGACAGCTTTCCCGCCCAGGGTGGAACCGCCCCACTGAGATTAACATTGGGTGGCTCCCAACCACTGACCTCAGGCTCACCTTGACATCAcctgggccccatcctcagggatttggctgtaattgggcttcagtgggctttggagaattacggcttgctgaatctccccaggtgagattaatgtgcaATTCCCTTCCTAGACCACCCGGGCCAGGTGTGATAGGCGACAGAACAGGAAA-TACACATTTTGGGTTTTGCAGGGTACCTGGCTCCCAGCTTTAAAAACTCTTGTAGAGa-aaaaaaattaaacaaaaataaa-----taaaaatt---aaaaaaaaAGAGGACAAAAACTCCCGTGACTTCCTAAGTTACAAATACAATAAGTCTACTTTGTggccaactgtggtgcctcctgcctataaatcccagcaggctgagaggcctaggccagtggatccctaggggccaggagtttgataccagcctaggcaacatagcaagatgccatctcttcaaaaatatttaataattagccatgcataggctgggcgtggtagctcatgcctgtagtcccagcaatttgggaagccgaggcgggtggatcacctgaggtcaggagttggaga-------------------------------ccagactggccaacgtg-gtgaaactctgtctc--------tactaaacatacaaaaaattagccaggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgagacaggacaatcacttgaactagggaggtggagggtg-agtgaggcacgatcacgccattgcactccagcctgggtgacaagagcaaga--ct-gtct----caaaaacaaaaac-aaaaaa-attagccatacatgatgggctgcacctgtaatcccagctattcaggaggctgaggtgggaggatcacctga------gctcaggagtttgaggctgcagtgagctgtgactg-gccatctcactccagcctaggccacagagtgagacccagtctcaaaaaaa
s panTro4.chr19              59864622 1073 +  63644993 CTTGCTTCCAGCCTGTGTTTCCTGCAAAGGGAACGGATAAAAAG-------GGGAGGTCT----CTGGCCCTTGGTACGCGGGGTGGAGAGACAGCTTTCCCGCCCAGGGTGGAGCCGCCCCACTGAGATTAACATTGGGTGGCTCCCAACCACTGACCTCAGGCTCACCTTGACATCAcctgggccccatcctcagggattcggctgtaattgggcttcagtgggctttggagaattacggcttgctgaatctccccaggtgagattaatgtgcaATTCCCTTCCTAGAGCACCCGGGCCAGGTGTGATAGGCAACAGAACAGGAAA-TACACATTTTGGGTTTTGCAGGGTACCTGGCTCCCAGCTTTTAAAACTCTTGTAGAGa-aaaaaaattaaacaaaaataaa-----taaaaatt---ttttaaaaaGAGGACAAAAACTCCCATGACTTCCTAAGTTACAAATACAATAAGTCTACTTTGTggccaactgtggtgcctcctgcctataaatcccagcaggctgagaggcctaagccagtggatccctaggggccaggagtttgataccagcctaggcaacatagcaagatgccatctcttcaaaaatatttaataattagccatgcataggctgggcgtggtagctcatgcctgtagtcccagcaatttgggaggccgaggcgggtggatcacctgaggtcaggagttggaga-------------------------------ccagactggccaacgtg-gtgaaactctgtctc--------tactaaacatacaaaaaattagccaggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgagacaggacaatcacttgaactagggaggtggagggtg-agtgaggcacgatcacgccattgcactccagcctgggtgacaagagcaaga--ct-gtct----caaaaacaaaaacaaaaaaa-attagccatacatgatgggctgcacctgtaatcccagctattcaggaggctgaggtgggaggatcacctga------gcccagaagtttgaggctgcagtgagctgtgactg-gccacctcactccagcctaggccacagagtgagacccagtctcaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56779306 1080 +  60714840 CTTGCTTCCAGCCTGTGTTTCCTGCAAAGGAAATGGATAAAAAG-------GGGAGGTCTCTGACTGGCCCTTGGTACGTTGGGTGGAGGGAGAGCTTTCCCACCCAGGGTGGAGCCGCCCCACTGAGATTAACATTGGGTGGCTCCCAACCACTGACCTCAGGCTCACCTTGACATCACCT-ggccccgtcctcagggattcggctgtaattgggctgcagtgcgctttggagaatcacggcttgctgaatctcccctggtgaaattaatgtgcaATTCCCTTCCTAGACCACCCGGGGCAGGTGTGATAGGCGACGGAACAGGAAA-TACACATTTTGGGTTTTGCAGGGTACCTGGCTCCCAGCTTTAAAAATTCTTGTAGAGa-aaaaaaaataaacaaaaataaa-----taaaaattaaaaaaaaaaaaGAGGATAAAACCTCCAGTGACTTCCTAAGTTACAAATACAATAAGTCTACTTTGTGGCCAACTATggttgctcctgcctataaatctcagcaggctgagaggcctaggccagtggatccctaggggccaggagtttgagaccagcctaggcaacagagcaagaagccatctctacaaaaatatttaataattagccatgcataggctgggcgtggtagctcacgcctgtagtcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttggaga-------------------------------ccagactggccaacatg-gtgaaaccctgtctc--------tactaaacatacaaaaaattagccaggtgtggtggcgggtgccta-aatcccagctactcgggaggctgagacaggacaatcacttgaactcaggaggtggagggtgcagtgaggcaagatcacgccattgcactctagcctgggtgacaggagcaagactct-gtct----caaaaacaaaaac-aaaaaa-attaaccatacatgatgggctgcacctgtaatcccagctattcaggaggctgaggtgggaggatcacctga------gcccaggagtttgaggctgcagtgagctgtgactg-gccacctcactccagcctgggccacagagtgagaccctgtctcaaaaaaa
i ponAbe2.chr19             I 121 I 1391
s rheMac3.chr19              60605427 1082 +  64156825 CTTGCTTCCAGCCTGTATTTTCTGCAAAGGAACTGGATAAAAAG-------GGGAGGTCTCTGATTGGCCCTCAGTACGCAGGGTGGAG----ACCTTTCCTGCCCAGGGTGGAGCCACCCCACTGAGATTAACATTGGGCGATTCCCAACCGCTGACCTCAGACTCACCTTGACATCAcctgggccccatcctcagggattcagctgtaattgggctgcagtgggctttggggaagcactgcttgttgaatctccccaggtgaggttaatgtgcaATTCCCTTCCTAGACCACCGGGGTCAGGTGTGATAGGTGACAGAACAGGAAA-TACACATTTTGGATTTTGCAAGGTACCTGGCTCCCAGCTCTAGAAACGCTTGCAGAGa-aaaaaaattaaacaaaaataaataaattaaaattt---ttaaaaGAAGAGGATAAAAACTTTTGTGACTTCCTAAGTTACAAATAAAACAAGTCTACTTTGTggccaactgtggtggctcctgcctataaatcccagcaggccgagaggcctaggccaggagatctctaggggccaggagtttgagaccagcctaggcaacatagcaagatgcattctctacaaaaatatttaataattagccatgcataggctgggcgtggtagctcatgcctgtattcccagcactttgggaggccgaggtgggtgtatcacctaatgtcaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaaccctgtctc--------tactaaaaatac-aaaaattagccaggcgtggtagcgggtgcctctaatcccagctacttgggaggctgagacacgagaatcacttgaacccaggaggcagaggttgcagtgacgtgagatcacgccattgcactccagtctgggtgacaagagcaaga--ct-gtctcaaacaaaaacaagaac-aaaaaacattatccatacatgatggcctgcacctgtaatcccagctattcaggaggctgagctgggaggatgacctga------gcccaggagtttgaggctgcagtgagctgtgattgtgccaccccacttcagcctgggccacagag-gagaccctgtctcaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55745663 1082 +  59248254 CTTGCTTCCAGCCTGTATTTTCTGCAAAGGAACTGGATAAAAAG-------GGGAGGTCTCTGATTGGCCCTCAGTACGCAGGGTGGAG----ACCTTTCCTGCCCAGGGTGGAGCCACCCCACTGAGATTAACATTGGGCGATTCCCAACCGCTGACCTCAGACTCACCTTGACATCAcctgggccccatcctcagggattcagctgtaattgggctgcagtgggctttggggaagcactgattgttgaatctccccaggtgaggttaatgtgcaATTCCCTTCCTAGACCACCGGGGTCAGGTGTGATAGGTGACAGAACAGGAAA-TACACATTTTGGATTTTGCAAGGTACCTGGCTCCCAGCTCTAGAAACGCTTGCAGAGA-AAAAaaattaaacaaaaataaataaattaaaATTT---TTAAAAGAAGAGGATAAAAACTTTTGTGACTTCCTAAGTTACAAATAAAACAAGTCTACTTTGTggccaactgtggtggctcctgcctataaatcccagcaggccgagaggcctaggccagcagatctctaggggccaggagtttgagaccagcctaggcaacatagcaagatgcattctctacaaaaatatttaataattagccatgcataggctgggcgtggtagctcatgcctgtattcccagcactttgggaggccgaggtgggtgtatcacctgatgtcaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaaccctgtctc--------tactaaaaatac-aaaaattagccaggcgtggtagcgggtgcctctaatcccagctacttgggaggctgagacacgagaatcacttgaacccaggaggcagaggttgcagtgacgtgagatcacgccattgcactccagtctgggtgacaagagcaaga--ct-gtctcaaacaaaaacaagaac-aaaaaacattatccatacatgatggcctgcacctgtaatcccagctattcaggaggctgagctgggaggatgacctga------gcccaggagtttgaggctgcagtgagctgtgattgtgccaccccacttcagcctgggccacagag-gagaccctgtctcaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47851035 1082 +  51301725 CTTGCTTCCAGCCTGTATTTTCTGCAAAGGAACTGGATAAAAAG-------GGGAGGTCTCTGATTGGCCCTCAGTACACAGGGTGGAG----ACCTTTCCTGCCCAGGGTGGAGCCACCCCACTGAGATTAACATTGGGCGATTCCCAACCGCTGACCTCAGACTCACCTTGACATCACCTGGGCCCCATCCTCAGGGATTCAGCTGTAATTGGGCTGCAGTGGGCTTTGGGGAAGCACTGCTTGTTGAATCTCCCCAGGTGAGGTTAATGTGCAATTCCCTTCCTAGACCACCGGGGTCAGGTGTGATAGGTGACAGAACAGGAAA-TACACATTTTGGATTTTGCAGGGTACCTGGCTCCCAGCTCTAAAAATgcttgcagaga-aaaaaaattaaacaaaaataaataaattaaaattt---ttaaaagaagaggataaaaaCTTTTGTGACTTCCTAAGTTACAAATAAAACAAGTCTACTTTGTGGCCAactgtggtggctcctgcctataaatcccagcaggCCGAGAGGCCTAGGCCAGCAGATCTCTagggaccaggagtttgagaccagcctaggcaacatagcaagatgcattctctacaaaaatatttaataattagccatgcataggctgggcgtggtagctcatgcctgtattcccagcactttgggaggccaaggtgggtgtatcacctgatgtcaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaaccctgtctc--------tactaaaaatat-aaaaattagccaggcgtggtagtgggtgcctgtaatcccagctacttgggaggctgagacaggagaatcacttgaaccctggaggcagaggttgcagtgaggcgagagcacgccattgcactccagtctgggtgacaagagcaaga--ct-gtctcaaacaaaaacaaaaac-aaaaaacattatccATACATgatggcctgcacctgtagtcccagctattcaggaggctgaggtgggaggatgacctga------acccaggagtttgaggctgcagtgagctgtgattgtgccacctcacttcagcctgggccacagag-gagaccctgtctcaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47559868 1081 +  50890351 GTTGCTTCCAGCCTGTATTTTCTGCAAAGGAACTGGATAAAAAG-------GGGAGGTCTCTGATTGGCCCTCAGTACGCAGGGTGGAG----ACCTTTCCTGCCCAGGGTGGAGCCACCCCACTGAGATTAACATTGGGCGATTCCCAACCGCTGACCTCAGACTCACCTTGACATCAcctgggccccatcctcagggattcagctgtaattgggctgcagtgcgctttggggaagcacggcttgttgaatctccccaggtgaggttaatgtgcaATTCCCTTCCTAGACCACCAGGGTCAGGTGTGATAGGTGACGGAACAGGAAA-TACACATTGTGGATTTTGCAGGGTACCTGGCTCCCAGCTCTAAAAACGCTTGCAGAGA-AAAAaaattaaacaaaaataaataaattaaaATTT---TTAAAAAAAGAGGATAAAAACTTTTGTGACTTCCTAAGTTACAAATAAAGTAAGTCTACTTTGTggccaactgtggtggctcctgcctatagatcccaggaggccgagaggcctaggccagcggatccctaggggccaggagtttgagaccagcctaggcaacatagcaagatgcattctctacaaaaatatttaataattagccatgcataggctgggcgtggtagctcatgcctgtattcccagcactttgggaggccgaggtgggtggatcacctgagatcaggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaaccctgtctc--------tactaaaaatac-aaaaattagccaggcgtggtagcgggtgcctctaatcccggctactcgggaggctgagacaggagaatcacttgaacccaggaggcagaggttgcagtgagatgagatcacgccattgcactccagtctgggtgacaagagcaaga--ct-gtctcaaacaaaaacaaaaac-aaaaaa-attatccatacatgatggcctgcacctgtaatcccagctattcaagaggctgaggtgggaggatgacctga------gcccaggagtttgaggctgcagtgagctgtgattgtgccacctcacttcagcctgggccacaaag-gagaccctgtctcaaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45913373 1021 +  49145316 CTTGCTTCCGGCCGGTGTTTTCTGCGAAGGACTTGGGTAATAAGAGGGTCAGGGAGCTCTGGGATTGG-CCTGGGGACCCGGGGTGGAGGCAGGTGTTTCCCGCCCAGGGTGGAGCTG-CCCACCGAGATTAACACTGCTTGGCTCCCAACCACTGACCTCAGACTAACCTTGACATCAcctgggccccatcctccgggattcagctgtcattgggctgcagtgggctttgggg-agcagggcttgctgaaagtccccaggtgaggttaatgtgcag-----TTCCTAGACCACCGAGGTCAGGTGTGATCGGCGACAGAACAGGACATTATACATTTTCAGTTTTATGGGGTCGCTGGCTCCCAGCTCCAAAAACTCATGTAAAGAGAAAAAAATTAAACGTAAATAAA-------TGTTTT---TTAAAAAAA---GATAAA----------------------------------------------ggccgggcgtcgtggctcacgcctgta-atcccagcactttgggaggccgaggcgggtggatcac--gaggtcaagagatcgagaccatcctggtcaacatggtgaaaccccgtctctactaaaaatacaaaaaatta-----------gctgggcatggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggcggagattgcggtgagcagagatcgtgccattgcactccagcctgggtaacaagagcgaaactccgtctcaaaaacaaaaccaaaccaaaaaaagataaa--aaGTCTTGTGACG---gcctgtaatcccagcactttgggaggcggaagtgggtggatcac--gaggtcaggagttcaaga-------------------------------ccagtctggccaatatgatgaaac--ctcatctctactaaaaat-------acaaaa-attatctgggcatagtggcatgtgcccgtaatcccagctactcgggaagctgaggcaggagaatcgcttgaaccgggacctgggaggcggaggttacagtgagccaagattgagccacctcactccagcctgggctacagagaaagactccgtctcaaaaaga
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494    0 + 122678785 I
e nomLeu3.chr10             103312726  246 - 106955855 I

a score=6926.000000
s hg38.chr19_GL949751v2_alt    866921 11 +   1002683 taaaTAGATAA----
s panTro4.chr19              59865695 11 +  63644993 taaaTAGATAA----
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60606509  7 +  64156825 ----taaataa----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55746745  7 +  59248254 ----taaataa----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47852117  7 +  51301725 ----taaataa----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47560949  7 +  50890351 ----taaataa----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45914394 11 +  49145316 ----taaaaaaagaa
i calJac3.chr22             C 0 I 7610
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56780386 1391 +  60714840 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=461783.000000
s hg38.chr19_GL949751v2_alt    866932 360 +   1002683 CTGATATTTAA------tttttttttttggatggagtcttgctctgtggcccaggctggagtgcagtggtgcaatctccattc-ttgcaacctctgccttccaggttcaagcaattctgatgcctcagcttcccaagtagctgggactgcaggcacatgccaccatgcccaactaattttttgtatttttagtagagacagggtttcaccatattggtcaggctggtctcaaactcctgatgtcaggt--------------------------------gatTACAGGCATGAGCCACCGCACCTGGCCTAAAATTGTTTTTAAATAAAACAGTGTATGTTGTGGAAAGCATTCAGCACAGAATTTTGGTAGTTTAAACTGTTAATTTAATGGAAGCA
s panTro4.chr19              59865706 361 +  63644993 CTGATATTTAA-----ttttttttttttggatggagtcttgctctgtggcccaggctggagtgcagtggtgcaatctcggttc-ttgcaacctctgccttccaggttcaagcaattctgatgcctcagcctcccaagtagctgggactgcaggcacatgccaccatgcccaactaattttttgtatttttagtagaggcagggtttcactatattggtcaggctggtctcaaactcctgatgtcaggt--------------------------------gatTACAGGCATGAGCCACCACACCTGGCCTAAAATTGTTTTTAAATAAAACAGTGTATGTTGTGGAAAACATTCAGCACAGAATTTTGGTAGTTTAAACTGTTAATTTAATGGAAGCA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60606516 392 +  64156825 CTGATATTTAA--TGttttttttttttgagatggagtctcgctctgtggtccaggctggaatgcagtagtgcagtctcagttcactgcaacctccgctccccaggttcaagcaattcttgtgcctcagcctcccgagtagctgggactgaaggcacacaccaccatgcctgactaattttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcaaactcctgatgtcaggcaatccacccacctcggccttccaaagtgctgggattacaggcaggagccaccgcacctggccTAAAATTGTTTTTAAATAAAACAGCGTATGTTGTGGAAAGCATTCAGCACAGAATTTTGG-----TAAACTGTTAATTTAACGGAAGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55746752 394 +  59248254 CTGATATTTAAttttttttttttttttgagatggagtctcgctctgtggtccaggctggaatgcagtagtgcagtctcagttcactgcaacctccgctccccaggttcaagcaattcttgtgcctcagcctcccgagtagctgggactgaaggcacacaccaccatgcctgactaattttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcaaactcctgatgtcaggcaatccacccacctcggcctcccaaagtgctgggattacaggcatgagccaccgcacctggccTAAAATTGTTTTTAAATAAAACAGCGTATGTTGTGGAAAGCATTCAGCACAGAATTTTGG-----TAAACTGTTAATTTAACGGAAGCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47852124 392 +  51301725 cggatatttaa--ttttttttttttttgagatggagtctcgctctgtggtccaggctggaatgcagtagtgcagtctcagttcactgcaacctccgcttcccaggttcaagcaattctcgtgcctcagcctcccgagtagctgggactgcaggcacatgccaccatgcctgactaattttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcgaactcctgatgtcgggtgatccacccacctcggcctcccgaagtgctgggattacaggcatgagccactgcacctggcctaaaattgtttttaaataaaacagtgtATGTTGTGGAAAGCATTCAGCACAGAATTTTGG-----TAAACTGTTAATTTAATGGAAGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47560956 391 +  50890351 CTGATATTTAA---tttttttttttttgagatggagtctcgctctgtggtctaggctggagtgcagtagtgcagtctcagttcactgcaacctccgcttcccaggttcaagcaattctcatgcctcagcctcccgagtagctgggactgcaggcacatgccaccatgcctgactaattttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcaaactcctgatgtcaggcgatccacccacctcggcctcccgaagtgctgggattacaggcatgagccaccacacctggccTAAAATTGTTTTTAAATAAAACAGTGTATGTTGTGGAAAGCATTCAGCACAGAATTTTGG-----TAAACTGTTAATTTAATGGAAGCA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56780386 1391 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=917661.000000
s hg38.chr19_GL949751v2_alt    867292 559 +   1002683 AATGGTCCCACAAATGAAGATGTATATATCAGTTGCAGCATGCCATCTATAGAAATAGGCACTATGGAggcctggcatggtggctcacacctgtaatccctgcactttggaaggctgaggcaggtggatcatctgaggtcagcagttcgagaccaacctgggcaacatggcaaaa-aa-cc----cctggctactaaaaat-aaagaattagccaggcatggtggtgtgcacctgtaatcccagctactcaggaggctgaggcgtaagaattgattgaacctgggagttggaggttgccgtgagccgagattgcaccactgcgctccagcctgggcgacagagactccatcttt------aaaaaaaaaaa------------aaaaagaTggccaggcgcagtggttcatgaatgtaatcccagcactttgggaggctgaggcgggaggactgcctgagtccaggagttcaagaccagcctgggcaatatggcgagactccctctctgaagaaaaagaaaaTAAAAACAATAAAAATAAATTATATTCTAGCTGAC--AAAA-----AGAGAGAGAGAGTATATTTTGTT
s panTro4.chr19              59866067 569 +  63644993 AATGGTCCCACAAATGAAGATGTAAATATCAGTTGCAGCGTGCCATCTACAGAAACAGGCACTATGGAggcctggcatggtggctcatgcctgtaatccctgcactttggaaggctgaggcagctggatcatctgaggtcagcagttcgagaccaacctgggcaacatggcaaaa-aa-cc----cctggctactaaaaat-aaagaattagccaggcatggtggtgtgcacctgtaatcccagctactcaggaggctgaggcatgagaattgattgaacctgggagttggaggttgcagtgagccgagattgcaccactgcgctccagcctgggagacagagacaccatctttaaaaaaaaaaaaaaaaa------------aaaaagaTggccaggcgcagtggttcatgaatgtaatcccagcactttgggaggctgaggcaggaggactgcctgagtccaggagttcaagaccagcctgggcaatatggcgagactccctctctgaaaaaaaagaaaaTAAAAACAATAAAAATAAATTATATTCTAGCTGAC--AAAAA-AAGAGAGAGAGAGAGTATATTTTGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56781777 558 +  60714840 AATGGTCCCACAAATGAAGATGTATATATCAGTTGCAGCATGCCATTTATAGAGATAGACACTATGGAggctgggcacggtggctcatgcctgtaatccctgcactttggaaggctgaggcgggtggatcatctgaggtcaggagttcgagaccaacctgggcaacatggcaaaaccc-cc----cctggcaactaaaaat-aaaaaattagccaggcatggtggtgtgcacctgtaatcccagctactcaggaggctgaggcatgagaattgattgaacctgggaggcggaggttgcagtgagccgagattgcacgactgcgctccagcctgggcgacagagactccatctt---------aaaaaacaa------------aaaaaGATggccaggcgcaatggttcatgaatgtaatcccagcactttgggaggctgaggcgggaggactgcctgagtccaggagttcaagaccagcctgggaaatattgcgagactccctctctgaaaaaaaagaaaaTAAAAACAATAAAAATAAATTATATTCTAGCTGAC--AAAAA----AAAGAGAGAGAGTATATTTTGTT
i ponAbe2.chr19             I 1391 C 0
s rheMac3.chr19              60606908 585 +  64156825 AACGGTCCCACAAATGGAGACGGATATATCAGCAGCAGCATGCCAGCTATAGAGACAGGCACTGTGGAggccggacacggtagctcacgcctgtaatccctgtacttcggaaggccaaggtgggtgtatcatctgaggtcaggagttcgagaccaacctgggcaacatgacaaaa-ca-ccccctcctcgctactaaaaat-aaaaaattagccaggcatggtgctatgcacctgtaatcccagctactcaggaggctgaggcatgagaattgattgaacctgggagccggagaatgcagtgagcccagattgtaccactgcactccagcctgggcgacagagactccatctt--aaaaaaaaaaaaaaaaaGAGAGAGAGAGAGAGAGATggccagccgcagtgattcacgaatggaatcccagcattttgggaggctgaggcgcgaggatggcctgagtccaggagttcaagaccagcctaagtgacatggtgagactccctctctgaaaaaaaagaaaaTAAAAACAATCAAAATAAATTCTATTCTAGCTGAC-AAAAAAAAAAAAAGAGAGAGAGTATATTTTGTT
i rheMac3.chr19             C 0 I 308
s macFas5.chr19              55747146 582 +  59248254 AATGATCCCACAAATGGAGACGGATATATCAGCGGCAGCATGCCAGCTATAGAGACAGGCACTGTGGAggccggacacggtagctcacgcctgtaatccctgtacttcggaaggccaaggtgggtggatcatctgaggtcaggagttcgagaccaacctgggcaacatgacaaaa-ca-ccccctcctcgctactaaaaat-aaaaaattagccaggcatggtgctatgcacctgtaatcccagctactcaggaggctgaggcatgagaattgattgaacctgggagccggagaatgcagtgagcccagattgtaccactgcactccagcctgggcgacagagactccatctt----aaaaaaaaaaaaaaagagagagagagagaGAGATggccagccgcagtgattcacgaatggaatcccagcattttgggaggctgaggcgcgaggatggcctgagtccaggagttcaagaccagcctaagtgacatggtgagactccctctctgaaaaaaaagaaaaTAAAAACAATCAAAATAAATTCTATTCTAGCTGAC--AAAAAAAAAAAAGAGAGAGAGTATATTTTGTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47852516 579 +  51301725 AATGGTCCCACAAATGGAGACGGATATATCAGCGGCAGCATGCCAGCTATAGAGACAGGCACtgtggaggccgggcacggtagctcacgcctgtaatccctgtacttcggaaggccaaggcgggtggatcatctgaggtcaggagttcgagaccaacctgggcaacatgacaaaa-caccCCCCTCctcgctactaaaaat-aaaaaattagccaggcatggtgctatgcacctgtaatcccagctactcaggaggctgaggcatgagaattgattgaacctgggagccggaagatgcagtgagcccagattgtaccactgcactccagcctgggcgacagagactccatctt----aaaaaaaaaaaaaa----agagagagagagagatggccaGCTGCAGTGATTCACGaatggaatcccagcattttgggaggctgaggcgggaggatggcctgagtccaggagttcaagaccagcctgagtgacacggtgagactccctctctgaaaaaaaagaaaataaaaacaatcaaaataaattctattctagctgac--aaaaaaaaaaaagagagagagtataTTTTGTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47561347 546 +  50890351 AATGGTCCCACAAATGGAGACGGATATATCAGCGGCAGCATGCCAGCTGTAGAGACAGgcactgtggaggccgggcacgg------------------cctg-------------------------agcatctgaggtcaggagttcgagaccaacctgggcaacatgacaaaa-ca-ccccctcctcgctactaaaaatgaaaaaattagccaggcatggtgctatgcacctgtaatcccagctactcaggaggctgaggcatgagaattgattgaacctggaaggcggaggttgcagtgagcccagattgcaccactgcactccagcctgggcgacagagactccatcttaaaaaaaaaaaaaaaaaaaaagagagagagagagagaTggccagtcgcagtgattcacaaatgtaatcccagcattttgggaagctgaggcacgaggatggcctgagtccaggagttcaagaccagcctgagcaacatggtgagactccctctctgaaaaaaaagaaaaTAAAAACAATGATAATAAATTCTATTCTAGCTGACCAAAAAAAAAGAGAGAGAGAGAGTATATCTTGTT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=1378495.000000
s hg38.chr19_GL949751v2_alt    867851 782 +   1002683 AAAACATTTGGCCTTTAGTCCTAGAGCAGCTATGGAGAGATAAACATGAAAGAGGTATCTCTTGTTATACATACCCAGGCCCTGCAACCACACCTGAGtttatgtaaatgaggtgacttttggaaagcccctagataaccccacaagtgcgagggactggctgccaaagaaaccgtcagtgattagacattgggaactttcagccccaggctccaagtggcctccagggaggggagaggggctgaaggttgaattgattatgaactgccagctatgtg---atcagcattgcccacctaaggaatcctccataaaccccaaaagaaaagggtttgggccgggtgtcctgtggctcatgcccgtaatcccaacgctttggg--aggcctagatgggaggattgcttgagcccaagaattctaggccagtctggacaaaatagcaagaccctggctctac----aaaaaataaaaaattagccaggcgtggtggagtgcacctgtagacccagctactcaggaggctgaggcatgagaatcacttgaacgcaggagacagaggctgcagtgagctgagatagcgccactgcactccagcctgggtgacggagttagactgtctc-------------aaaaaa-----aaaaaaaaccaggaaagagttcagaagagcttcctggttggtgaacccgggtgcattcgtgtgccaggactgtggtgcaccccaggtccacagggacagaagctcctgcacttcggactcctctaaacctccccctacgcatctcttccttggctgttcattt
s panTro4.chr19              59866636 793 +  63644993 AAAACATTTGGCCTTTAGTCCTAGAGCAGCTATGGAGAGATAAACATGAAAGAGGTATCTCTTGTTATGCATACCCAGGCCCTGCAACCACACCTGAGtttatgtaaatgaggtgacttttggaaagcccctagataaccccacaagtgcgggggactggctgccaaagaaaccatcagtgattagacattgggaactttcagccccaggctccaagtggcctccagggaggggagaggggctgaaggttgaattgattatgaactgccagctatgtg---atcagcattgcccacctaaggaatcctccataaacctcaaaagaaaagggtttgggccgggcgtcatttggctcatgcctgtaatcccaacactttgggtagggcctagatgggaggattgcttgagcccaagaattctaggccagtctggacaaaatagcaagaccctggctctac----aaaaaataaaaaattagccaggcgtggtggagtgcacctgtagacccagctactcaggaggctgaggcatgagaatcacttgaacgcaggaggcagaggctgcagtgagctgagatagcgccactgcactccagcctgggtgacggagttagactgtctc-aaaaaaaaa---aaaaaa-----aaaaaaaaacaggaaagagttcagaagagcttcctggttggtgaacccgggtgcatccgtgtgccaggactgtggtgcaccccaggtccacagggacagaagcttctgcactttgggctcctctaaacctccccctacgcatctcttccttggctgttcattt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56782335 799 +  60714840 AAAACATTTGGCCTTTAGTCCTAGAGCAGCTATGGAAAGATAAACATGAAAGAGGTATCTCTTGTTTTGTATACCCAGGCCCTACAACCACATCTGAGCttatgttaatgaggtgacttttggaaagcccctagataaccccacaagggcgggggactggctgccaaagaaaccgtcagtgattagacattgggaactttcagccccaggctccaagtggcctccagggaggggagaggggctgaaggttgaattgattatgaactgccagctatgtg---atcagcattgcccacctaaggaatcctccataaaccccaaaagaaaagggtttgggccgggcatcatgtggctcatgcctgtaatcccaacactttggg--aggcctagatgggaggactgcttgagcccaagaattctagaccagtctggacaaaatagcaagaccctggctctac----aaaaaataaaaaattagccaggcgtggtggagtgcacctgcagacccagatactcaggaggctgaggcatgagaatcacttgaacgcaggaggcagaggctgcagtgagctgagatagcgccactgcactccagcctgggtgacggagtgagactgtctc-aaaaaaaaaaacaaaaaacaaacaaaaaaaaacaggaaagagttcagaagagcttcctggttggtgaatcggggtgcatccgtgtgccaggactatggtgcaccccaggtccacagggacagaagctcctgcacttgggactcctctaaacctcctcctgtgcatctcctccttggctgttcattt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60607801 786 +  64156825 aaaGCATTTGACCTTTAGTCCTAGAGCAGCTATGGAGAGAGAAAGGTAAAAGAGGTATCTCTTGTTATGCATGGCCAGGCCCTCCAACCACACCTGAGtttatgttaacgaggtgatttttggaaagcccctagataaccccacaagggcgggggactggctgccgatga------caacgattagacattaggaactttcagccccaggctccaagtgtcctccagggaggggagaggcgccgaaggttgaattgattatgaactgccagctatgtgatcatcagcatagcccacctaaggaatcctccagaaactccaaaaggaaagggtttgggccgggcgtcctgtggctcatgcctgtaatcccaacactttggg--aggcctagatgggaggattgcttgagcccaagaattctagaccagtctggacaagatagcaagaccctagctctac--aaaaaaaatgaaaaatgagccaggcatggtggagtgcacctgtggaccccgctactcaggaggctgcggtgtgagaatcacttgaacgcaggaggcagaggctgcagtgagttgagatcacgccactgcactccagcctgggtgacggagtgagactgtctc-----aaaaa---aaaaaa-----aaacaaaaacacgaaagagttcagaagagcttcctggttggtgaactggggtgcacccatgtgccaggactgtggtgcaccccaggcccacagggacagaaactcctgcactcgggactcctctgaacctcccccaatgcatctcctccttcactgttcattt
i rheMac3.chr19             I 308 C 0
s macFas5.chr19              55747728 791 +  59248254 AAAGCATTTGACCTTTAGTCCTAGAGCAGCTATGGAGAGAGAAAGGTAAAAGAGGTATCTCTTGTTATGCATGGCCAGGCCCTCCAACCACACCTGAGtttatgttaacgaggtgatttttggaaagcccctagataaccccacaagggcgggggactggctgccgatga------caacgattagacattaggaactttcagccccaggctccaagtgtcctccagggaggggagaggctccgaaggttgaattgattatgaactgccagctatgtgatcatcagcatagcccacctaaggaatcctccagaaactccaaaaggaaagggtttgggccgggcgtcctgtggctcatgcctgtaatcccaacactttggg--aggcctagatgggaggattgcttgagcccaagaattctagaccagtctggacaagatagcaagaccctagctctac--aaaaaaaatgaaaaattagccaggcatggtggagtgcacctgtggaccccgctactcaggaggctgcggtgtgagaatcacttgaacgcaggaggcagaggctgcagtgagttgagatcacgccactgcactccagcctgggtgacggagtgagactgtctcaaaaaaaaaa---aaaaaa-----aaaaaaaaacacgaaagagttcagaagagcttcctggttggtgaactggggtgcacccatgtgccaggactgtggtgcaccccaggtccacagggacagaaactcctgcactcgggactcctctgaacctcccccaatgcatctcctccttcactgttcattt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47853095 770 +  51301725 AAAGCATTTGACCTTTAGTCCTAGAGCAGCTATGGAGAGAGAAAGGTAAAAGAGGTATCTCTTGTTATGCATGGCCAGGCCCTCCAACCACACCTGAGTTTATGTTAACGAGGTGATTTTTGGAAAGCCCCTAGATAACCCCACAAGGGCGGGGGACTGGCTGCCGATGA------CAACGATTAGACATTAGGAACTTTCAGCCCCAGGCTCCAAGTGGCCTTCAGGGAGGGGAGAGGCGCTGAAGGTTGAATTGATTATGAACCGCCAGCTATGTG---ATCAGCATTGCCCACCTAAGGAATCCTCCAGAAACTCCAAAAGGAAAGGGTTTGGGCCGGGCAtcatgtggctcatgcctgtaatcccaacactttggg--aggcctagatgggaggaatgcttgagcccaagaattctagaccagtctggacaaaatagcaagaccctggctctacaaaaaaaaaatgaaaaattagccaggcatggtggagtgcacctgtggacccagctactcaggaggctgaggcgtgagaatcacttgaacgcaggaggcagaggctgcagtgagttgagatcacgcca--------cagcctgggtgacggagtgagactgtctc---------------aaaa-----aaaaaaaaacacgaaagaGTTCAGAAGAGCTTCCTGGTTGGTGAACCGGGGTGCACCCATGTGCCAGGACTGTGGTGCACCCCAGGTCCACAGGGACAGAAACTCCTGCACTCGGGACTCCTCTAAACCTCCCCCAATGCATCTCCTCCTTCGCTGTTCAttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47561893 783 +  50890351 AAAGCATTTGACCTTTAGTCCTAGAGCAGCTATGGAGAGAGAAAAGTGAAAGAGGTATCTCTTGTTATGCATGGCCAGGCCCTACAACCACACCTGAGtttatgttaacgaggtgatttttggaaagcccctagataaccccacaatcgcgggggactggctgccgatga------cagcgattagacattaggaactttcagccccaggctccaagtggcctccaggaaggggagaggcgctgaaggttgaattgattatgaaccgccagctatgtgatcatcagcatagcccacctaaggaatcctccataaactccaaaaggaaaaggtttgggccgggcgtcatgtggctcatgcctgtaatcccaacactttggg--aggcctagatgggaggattgcttgagcccaagaattctagaccagtctggacaaaatagcaagaccctggctctac-aaaaaaaaatgaaaaattagccaggcgtggtggagtgcacctgtggacccagctactcaggaggctgaggcgtgagaatcacttgaatgcaggaggcacaggctgcagtgagttgagatcacgccactgcactccagcctgggtgacggagtgagactgtctc---------a---aaaaaa-----aaaaaaaaacatgaaagagttcagaagagcttcctggttggtgaaccggggtgcacccatgtgccaggactgtggtgcaccccaggtccacagggacagaaactcctgcactcgggactcctctaaacctcccccaatgcatctcctccttcgctgttcattt
i chlSab2.chr6              C 0 I 2884
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I

a score=20176.000000
s hg38.chr19_GL949751v2_alt    868633 16 +   1002683 gtatcctttaaaatat
s panTro4.chr19              59867429 16 +  63644993 gcatcctttaaaatat
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56783134 16 +  60714840 atatcctttaaaatat
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60608587 16 +  64156825 acatcctttaaaatat
i rheMac3.chr19             C 0 I 3003
s macFas5.chr19              55748519 16 +  59248254 atatcctttaaaatat
i macFas5.chr19             C 0 I 2920
s papAnu2.chr19              47853865 16 +  51301725 atatcctttaaaatat
i papAnu2.chr19             C 0 I 5245
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47562676 2884 +  50890351 I

a score=178653.000000
s hg38.chr19_GL949751v2_alt    868649 735 +   1002683 gaaagggcgggttgcccctccacacctgtgggcatttctcgttaggtggaaggagagacttggaaaagaaagagacac--agacaaagtatagagaaagaaataaggggacccaggggaccagcattcagcatatggaggatcccgccagcttctgagttcccttagtatttattgatcattttggggtgtttctcagagagggggatgtggcagggtcataggataatagtggagggaaggtcagcagataaacacgttaacaaaggtctctgcatcatagacaaggtaaagaactaagtgctgtgctttagatatgcatacacataaacatctcaatgccttacggagcagtattgctgcccgcatgtcccacctccagccctaaggcggttttcccctatctcagtatatggaatatacaatcggggtttacacccatacattccattgcccagggacgagcaggagacagatgccttcctcttgtctcaactgcaaagaggtgttccttcctcttttactaatccgcctcagcacagaccctttactggtgtcgggctgagggacggtcaggtctttcccttcccatgagaccata--tttcaggctatcacatggggagaaaccctggacaatacctggct--ttcctaggcagaggtccctgcggccttccgcagtgtttgt--gtccctgggtacttgagattagggagtggtga-tgactcttaaggagcatgctg
s panTro4.chr19              59867445 735 +  63644993 gaaagggcaggttgcccctccacacctgtgggcatttctcgttaggtggaaggagagacttggaaaagaaagagacac--agacaaagtatagagaaagaaaaaagggggcccaggggaccagcgttcagcacacggaggatcccgccagcttctgagtttccttagtatttattgatcattttggggtgtttctcggagagggggatgtggcagggtcataggataatagtggagagaaggtgagcaggtaaacacataaacaaaggtctctgcatcatagacaaggtaaagaactaagtgctgtgctttagatatgcacacgcataaacatctcaatgccttacagagcagtattgctgccctcaagtcccacctccagccctaaggcggttttcccctatctcagtagatggaatatacaatcggggtttacacccatacattccattgcccagggacgagcaggagacagatgacttcctcttgtctcaactgcaaagaggtgttccttcctcttttactaatcctcctcagcacagaccctttacgggtgtcgggctgggggacggtcaggtctttcccttcccacaaggccata--tttcaggctatcacatggggagaaaccctggacaatacctggct--ttcctaggcagaggtctctgcggccttccgcagtttttgt--gtccctgggtacttgagattagggagtggtga-tgactcttaaggagcatgctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56783150 741 +  60714840 gaaggggtgggttgcctctccacacctgtgggcatttctcgttaggtggaacaagagacttggaaaagaaagagacacagagacaaagtatagagaaagaaaaaagggggcccaggggagcggcgttcagcacacggaggatccc-caggcctccgagttcccttagtatttattgatcattcttcagtgtttctcggagaggaggatgtggcaggatcacaggataatagtggagagagggtcagcaggtgaacacgtgaacaaagg--tctgcatcatagacaaggtaaagaattcagtgctgtgctttagatatgtatacacataaacatctcagtgccttgaagagcagtattgctgccctcatgtcccacctccagccctaaggctgttttcccctatctcagtagatggaatatacaatcggggtttacacccagacattccattgcccagggacgagcaggagacagatgccttcctctggcctcaactgcaaagaggccttcctttctcttctactaatcctcctcagtacagaccctttacgggtgttgggctgggggacggtcagatctttcccttcccaggaggccatatctctcaggctatcacatggggagaaaccttggacaatacctggctaagggcaaggcagaggtccctgcggccttccgcagtgttttttaatcgctgggtacttgaaattagggagtggtgagtgactcttaactagcatgctg
i ponAbe2.chr19             C 0 I 7626
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47562676 2884 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e macFas5.chr19              55748535 2920 +  59248254 I
e rheMac3.chr19              60608603 3003 +  64156825 I

a score=314621.000000
s hg38.chr19_GL949751v2_alt    869384 3528 +   1002683 ccttcaagcatttgtttaacaaagcacatcttgcacagcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacagggttgggggtaaggtcatagattaacagcatctcaaggcagaagaatttgtcttagtacagaacaaaatgaagtctcctgtgtctacttctttctacacagacacagttacaatctgatctctctttcttttccccacaAAAATATCCTTTGTAgaccaggcacagtggctcaggcctgtaatcccagcactttgggaggctgaggcagatggatcacttaaggtcaggagtttgagaccagcccagccagcatggtgaaactgcgtctctacaaaaatacaaaaattagcggggcatggtagttcaacgcctgtaatcccagctactcgagaggctgaggcagaattgtttgaacccgggaggcagaggcagaggttgcagtgagccgaggtcgcacgactgcactccagcctgggtgcaacagagtgagactccatctcaaaaaacaaaaaacaaaaacaaaaacaaaacaaaaaatgaaaacccacttttagtaaaaaaaataaaaatgaaaaaatgtgaatcaggctgcactctggcccacatcctggctgctgtgtatcacgtggctctagacactgcacttttgcctcctcatcattgctgtagataggatttctgacagcagggtcattagacgaa--tttttttttttttttgagacggagtctcgctctgtcgcccaggctggagggcagtggcgcaatctctgctcactgcaagctccgcctcccgggttcacacaattctcctgcctcagcctcccgaatagctgggactacaggtgcctgcaaccatgcctggctaattttttttgtatttttagtagagacgcggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatcctcccgcctaggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccccattagacaaatttgtatctgcacggttcctacagataaactctgggacattagaattataaggcttttgtttaaggatggtttcagatgtttttcagaccttgaattccagccaaatagctgacactaaccagtttgaagaccccagtgaggaatgggatcagcatgagaacactgcgtcttcatgcccctgtctccgccagcagtcagcatggccacactctggcccacaccaaaacacttaaaaaccctagccccggccgggtgcagaggctcacacctgtaactccagcactttgggaggccaaggcaggtgaatcacctgaggtcaagagttcaagaccagcctggccaacatagtgaaaccccgtttctactaaaaacacaaaaaattagtcgggcgtggtagcgggtgcctgtaaccccagctactcaggaggctgaggcaagagaattacttgaacctgggaggcggaggttgcagtgagcaaagatcctgccactgcactccagcctgggtgacaaagcaaaactccatctcaaaaa--aaaaaaaaaccctagacccaaacttctgggggagatggattggaggtttcctcccatctcctcattcctcagccctgtgattaaacttccttctcttctgcaacacagtgacccggcaaattgactcacagcgtgcattgggcaacggacctactgtcagaggcgtgtaaccagggcaactccatcttgaataggagctgactaaaataaggctgagacctaccgggctgcattcccagacagttaaggcattctcca--------aaaaaaacaaaaatgacaggcacggtggcccagcactttgggaggccgaggcgggtggattacccgaagtagagtttgagaccagcctggccaacacggtgaaaccccgtctctactgaaaatacaaaaattagtcaggcgtggtggctcgtgcctgtaatcccacctacttgcgaggctgaggcaggagaatcgcttgagccggggaggcggaggttgcagtaaaaag-aaaaaaaaaagcattctaagtcacaggatgagataagtcagcacaagatacaggtcataaggaccttgctgataacacaggtagcaatgtagcaggaccagccacagacaaaactcctcagacaccgagttaaagaagaaaggggtttatccggccaggggcatcggcaagactcccgtctcaagagccgagatccccaagtgagcaattcctgtcccttttaagggctcacaactctaagggggtgtgcgtgagagggtcgtgatcgactgagcaagcagggggtacgtgactgggggctgcatgcactggtaatcagatccaaacaaaacaggatagggattttcacagtgcttttctatacaatgtctgtaatctatagataaccgattaggtcaggggtcaatctttaactaccaggcccagggtgtggcgccgggctgtctgcttgtggatttcattcctgggccgcggggc------------------------------------tgtctgcttgtggatttcattcctggggcgcggggctgtctgcttgtggatttcatttctgccttttagtttttactttttctttctttggaggtggaaattgggcataagacaatatgaggggtggtctcctcccttagcaataaagaatccagccaggccgggcgcggtggctcacacctgtaatcccagcactttcgggggctgaggcgggtggatcacacggtcaggagattgagaccatcctggctaacacggtgaaa--ccatctctactaaaaaaaaaaaatacaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacccgggtgatggagcttgcagtgagcggagatcgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaataaaaaataaataaaaataaataaagcatccagtcaaactccatcaaaaccaagatagtgacgagagtaacctctggttgtcctcaccgctccactcccagcagccccatgacagtttacaaatgccatggcaatgtcaggaagttaccctatgctgtctaaaaaggggaggcatgaataatccaccccttgtttagcatatccatagaaataaccataaaaatgggcaaccggccgggcgcggtgg-tcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaatcccatctctactaaaaaaaaatacaactaattagctgggtgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcctgaacccaggaggcggagcttgcagtgagccgagatagtgccactgcactctggcctggtgaaagagcgagactccgtctcaaaaaaaaaaaaaaaaaaa
s panTro4.chr19              59868180 3545 +  63644993 ccttcaagcatctgtttaacaaagcacaccctgcacagcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacggggttgggggtaaggtcatagattaacagcatctcaaggcagaagaatttgtcttagtacagaacaaaatggagtctcctgtgtctacttctttctacacagacacagttacaatctgatctctctttcttttccccacaAAAATATCCTTTGTAgaccaggcacagtggctcaggcctgtaatcccagcactttgggaggctgaggcagatggatcacttaaggtcaggagtttgagaccag-ccagccaacatggtgaaactgcgtctctacaaaaatacaaaaattagccgggcatggtagctcaatgcctgtaatcccagctactcgagaggctgaggcagaattgtttgaacctgggaggcagaggcagaggttgcagtgagccgagatcgcacgactgcactccagcctgggtgcgacagagtgagactctatctcaaaaaac------taaaaacaaaaacaaaacaaaaaaTGAAAACCCGCttttagtaaaaaaaataaaaatgaaaaaatgtgaatcaggctgcactctggcccacgtcctggctgctgtgtatcacgtggctctagacactgcacttttgcctcctcatcattgctgtagataggatttctgacagcagggtcattagatgaatttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcaatggcgcaatctctgctcactgcaagctccgcctcctgggttcacacaattctcctgcctcagcctcccgaatagctgggactacaggtgcctgcaacaatgcccggctaattttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccccattagacgaatttgtatctgcacggttcctacagataaactctgggacattagaattataaggcttttgtttaaggatgg-----------tttcagaccttgaattccagccaaatagctgacactaaccagtttgaagaccccagcgaggaatgggatcagcatgagaacaccgcgtcttcatgtccctgtctccgccagcagtcagcatggccacactctggcccacaccaaaacacttaaaaaccctagccctggccgggtgcagaggctcacacctgtaactccagcactttgggaggccaaggcaggtgaatcacctgaggtcaagagttcaagaccagcctggccaacatagtgaaaccccgtttctactaaaaacacaaaaaattagtcgggcgtggtagcgggtgcctgtaaccccagctactcaggaggctgaggcaagagaattacttgaacctgggagggggaggttgcagtgagcaaagatcctgccactgcactccagcctgggtgacaaagcaaaactccatctcaaaaaacaaaaaaaaaccctagacccaaacttctggggcagatggattggaggtttcctcccatctcctcattcctcagtcctgtgattaaacttccttctcttctgcaacacagtgacccggcaaattgactcacagcgtgcattgggcaacggacctactgtcagaggcgtgtaaccagggcaactccatcttgaataggagctgactaaaataaggctaagacctaccgggctgcattcccagacagttaaggcattctccaaaaaaaacaaaaaaacaaaaatgccaggcacggtggcccagcactttgggaagccgaggcaggtggattacccgaagtagagtttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagtcaggcgtggtggctcgtgcctgtaatcccagctacttgcgaggctgaggcaggagaatcgcttgagccggggaggcggaggttgcagtaaaaagaaaaaaaaaaagcattctaagtcacaggatgagataagtcagcacaagatacaggtcataaggaccttgctgataacacaggtcgcaatgtagcaggaccagccacagacaaaactcctcagacaccgagttaaagaagaaaggggtttattcggccaggggcatcggcaagactcccgtctcaagagccgagatccccaagtgagcaattcctgtcccttttaagggctcacaactctaagggggtgcgcgtgagagggtcgtgatcgattgagcaagcagggggtacgtgactgggggctgcatgcaccggtaatcagatccaaacaaaacaggatagggattttcacagtgcttttctatacaatgtctgtaatctatagatgaccgattaggtcaggggtcaatctttaactaccaggcccagggtgtggcgcggggctgtctgcttgtggatttcattcctggggcgcggggctgtctgcttgtggatttcattcctggggcgccgggatgtctgcttgtggatttcattcctggggcgcggggctgtctgcttgtggatttcatttctgccttttagtttttactttttctttctttggaggtggaaattgggcataagacaatatgaggggtggtctcctcccttagcaataaagaatccagccaggccgggcgcggtggctcacgcctgtaatcccagcactttggggggccgaggcgggcggatcacaaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctact-------aaaaatacaaaaaattagccgggcttggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggtgatggagcttgcagtgagccgagatcgcgccaccgcactccagcctgggtgacagagcaagactccgtctcaaaaaaataaaaaat------aaataaataaagcatccagtcaaactccatcaaaaccaagatagtgacgagagtaacctctggttgtcctcaccgttccactcccagcagccccatgacagtttacaaatgccatggcaatgtcaggaagttaccctatgcggtctaaaaaggggaggcatgaataatccaccccttgtttagcatatccatagaaataaccataaaaatgggcaaccggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcc-aggcgggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctact-aaaaaaaatacaacaaattagctgggcgtggtggcgggcgcctgtagtcccagctactcgggaggttgaggcaggagaatggcctgaacccaggaggcggagcttgcagtgagccgagatagtgccactgcactctggcctggtgaaagagcgagactccgtctc--aaaaaaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
e canFam3.chr1              102637494    0 + 122678785 I
e ponAbe2.chr19              56783891 7626 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726  246 - 106955855 I
e chlSab2.chr6               47562676 2884 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e macFas5.chr19              55748535 2920 +  59248254 I
e rheMac3.chr19              60608603 3003 +  64156825 I

a score=174656.000000
s hg38.chr19_GL949751v2_alt    872912 235 +   1002683 aaaaaGGGCAACCGAggccggacgtggtggcttacgcctgtaatcccaacactttgggaggccgaggcgggcatatcacctgagctcaggaggtcaagatcagcctggccaacatggtgaaaccccatctcttactaaaaatacaaaaattagccagacgtgatggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaactgaagtgattcaag
s panTro4.chr19              59871725 235 +  63644993 aaaaaGGGCAACCAAggccggacgtggtggcttacgcctgtaatcccaacactttgggaggccgaggcgggcatatcacctgagctcaggaggtcgagatcagcctggccaacatggtgaaaccccatctcttactaaaaatacaaaaattagccagacgtgatggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaactcaagtgattcaag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56791517 228 +  60714840 aaaatgggcaaccaaggctgggcttggtggctcactcctgtaatcccaacacttcaggaggctgaggcgggcagatcacctgaggtcaggaggtcgagatcagcctggccaacatggtgaaaccccatctcttactaaaaatacaaaaattagccagacctgatggcaggcgcctgtaatcccagctactcaggaggccgaggcaggagaatcacttgaacccagg-------aa
i ponAbe2.chr19             I 7626 C 0
s macFas5.chr19              55751455 221 +  59248254 aaaatgggcaaccaaggctgggtgtggtggctcacgcctgtgatcccaaccctttcagaggcctacacaggtggatcacctgaggtcaggaggtcgagatcagcctggccaacatggtgaaaccccatctcttactaaaaataaaaaaattag-------tgatggcgcgcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccggg-------ag
i macFas5.chr19             I 2920 C 0
s chlSab2.chr6               47565560 221 +  50890351 aaaatgggcaaccaagaccgggtgtggtggctcatgcctggaatcccaacactttcagaggcctatgcaggcagatcacctgaggtcaggaggtggacatcagcctggccaacatggtgaaacctcatctcttactaaaaatacaaaaattag-------tgatggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccagg-------ag
i chlSab2.chr6              I 2884 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e rheMac3.chr19              60608603 3003 +  64156825 I

a score=331917.000000
s hg38.chr19_GL949751v2_alt    873147 283 +   1002683 gcagaggtttcagtgagccaagatcacgccactgcactccagcctgggcgacaagagcaaaactccatctc--aaaaaaaataagggcaactagcagccctatgggctgctgtctatggagtagctattcttttactccttcactttcctaataagcttgcttccactttactccatagtctcgccctgaattctttctggtatgagattcaagaacccACCATGCCCAGCTCGTCCTTACTTGCTTTTAAAAAATATCATTGGTggccgggcgcggtggctcac
s panTro4.chr19              59871960 283 +  63644993 gcagaggtttcagtgagccaagatcacgccactgcactccagcctgggcgacaagagcaaaactccatctc--aaaaaaaataagggcaaccagcagccctatgggctgctgtctatggagtagctattcttttactccttcactttcctaataagcttgctttcactttactccatagtctcgccctgaattctttctggtatgagattcaagaacccACCATGCCCAGCTCGTCCTTACTTGCTTTTAAAAAATATCATTGGTggccgggcgcggtggctcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56791745 282 +  60714840 gcagaggttgcagtgagccaagatcacaccattgcact-cagccggggcgacaaaagcaaaactccatctc--aaaaaaaataagggcaaccaggagccctacgggctgctgtctatggagtagctattcttttactccttcactttcctaataagcttgctttcactttactccatgatcttgccctgaattctttctggcatgagattcaagaacccACCATGCCCAGCTCGTCCTTACTTGCTTTTAAAAAGTATCATTGCTggccgggcgcggtggctcac
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60611606 274 +  64156825 gcagaggttgcagtgagccgagatcgcgccattgcactccagtcttggcaataagagtaaaactccctctcaaaaaaaaaataagggcaaccagcagccc-----------gtctatggagtagctattcttttattcgttcactttcctaataagcttgctttcactatactccatggacctgccctgaattctttctggcgtgagattcaagaacccactATGCCCAGCCCATCCTTACTTGCTTTTAAAAAGTATCATTGGTGgctggacatggtggctcac
i rheMac3.chr19             I 3003 C 0
s macFas5.chr19              55751676 274 +  59248254 gcagaggttgcagtgatctgagatcacgccattgcactccagcctgggcaacaagagcaaaactccatctcaaaaaacaaataagggcaaccagcagccc-----------gtctatggagtagctattcttttattcgttcactttcctaataagcttgctttcactatactccatggacctgccctgaattctttctggcgtgagattcaagaacccactATGCCCAGCCCATCCTTACTTGCTTTTAAAAAGTATCATTGGTggctggacaccgtggctcac
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47565781 274 +  50890351 gcggaggttgcagtgatctgagatcacgccattgcactccagcctgggcaacaaaagcaaaactccatctccaaaaaaaaataaaggcaactagcagccc-----------gtctgtggagtagctattcttttattccttcactttcctaataagcttgctttcactatactccatggacctgccccgaattctttccggcgtgagattcaagaacccactATGCCCAGCCCATCCTTACTTACTTTTAAAAAGTATCATTGGTggccggacacagtggctcac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e papAnu2.chr19              47853881 5245 +  51301725 I

a score=110530.000000
s hg38.chr19_GL949751v2_alt    873430 136 +   1002683 gcctgcaatcccagcactttgggaggccaaggctggcggatcacctgaggtccgaagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaatac-aaaaaaattagctgggtgtggtggtgcgt
s panTro4.chr19              59872243 136 +  63644993 gcctgcaatcccagcactttgggaggccaaggctggcggatcacctgaggtccgaagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaatac-aaaaaaattagctgggtgtggtggtgcgt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56792027 137 +  60714840 gcctgtaatcccagcacttcaggaggccaaggctggcagatcacctgaggtcagaagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaatacaaaaaaaattagctgggcgtggtggcacgt
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55751950 137 +  59248254 gcttgtaatcccagcactttgggaggacaaggcgagcggatcacctgaggtcagatgttcaagaccagcctgaccaacatggagaaactccatctgtactaaaatacaaaaaaaatcagctggctgtggtggtgcat
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47566055 137 +  50890351 gcctgtaatcccagcactttcggaggccaaggcgggcggatcacctgaggtcagacgttcgagaccagcctgaccaacatggagaaaccccatctgtactaaaatacaaaaaaaattagctgggtgtggtggtggat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e rheMac3.chr19              60611880   0 +  64156825 C

a score=172977.000000
s hg38.chr19_GL949751v2_alt    873566 145 +   1002683 gcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggtggcagaggttgcagtgagccaagatcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaa------------------------------------aaataaataaataaa
s panTro4.chr19              59872379 145 +  63644993 gcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggtggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggcaacaagagtgaaactctgtctcaa------------------------------------aaataaataaataaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56792164 157 +  60714840 gccggtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccccggtggcagaggttgcagtgagccgagatcatgccattgcactccaacctgggcaacaagagtgaaactctgtctcaa------------------------aaataaataaataaataaataaataaa
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60611880 145 +  64156825 gcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggaggtggcagtgagccgagatcgcaccactgcactccagcctgggcaacaagagtgtaactccatctcaa------------------------------------aaataaataaataaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55752087 181 +  59248254 gcctgtaattccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggcggaggtggcagtgagccgagatcgcaccactgcactccagcctggacaacaagagtgaaactgcatctcaaaactaaataaataaataaataaataaataaataaataaataaataaataaa
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47566192 144 +  50890351 gcctgtaattccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggaggtggcagtgagccgagagcgcaccactgcactccagcctgggcaacaagagt-taactccatctcaa------------------------------------aaataaataaataaa
i chlSab2.chr6              C 0 I 1756
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e papAnu2.chr19              47853881 5245 +  51301725 I

a score=175847.000000
s hg38.chr19_GL949751v2_alt    873711 222 +   1002683 aTCATTGGAATAATTTTCTTCTTTAGGAAGAGCAGCCTTGggccaggcatggtggcacatgcctggaatccccgaactttgggcagcccaggtaggtggattgcttgagtt----------caagagttccagaccagcctggacaacatgatgaaacctcttcttgatcaaatatacagaatttcgactgagcacagtggctgtaagcccagcatgttgggaagctgaggt
s panTro4.chr19              59872524 222 +  63644993 aTCACTGGAATAATTTTCTTCTTTAGGAAGAGCAGTCTTGggccaggcatggtggcacatgcctggaatccccgaactttgggaagcccaggcaggtggattgcttgagtt----------caagagttccagaccagcctggacaacatgacgaaacctcttcttgatcaaatatacaaaaTTTCGACTGAGCACAGTGGctgtaagcccagcatgttgggaagctgaggt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56792321 222 +  60714840 ATCATTGGAATAATTTTCTTCTTTAGGAACAGCAGCCTTGggccaggcatggtggcacatgcctggaatcccagaactttgggaagcccaggcaggtggattgcttgagtt----------caagagttccagaccagcctggacaacatgacaaaacctcttctccatcaaatatacaaaatttcgactgagcacagtggctgtaatctcagcacattgggaagccgaggt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60612025 229 +  64156825 aTCAGTGGAATAATT---TTCTTTAGGAAGAGCAGCCTTGAgccaggcatggtggcacatgcctggaatcccaggactttgggaagcccaggcaggtggattgcttgagcttccacctgcctgggagttccagaccagcctgaacaacatgacaaaacctcatctcaataaaatataccaaatttcgattgagcctggtggctgtaatcccagcatgttgggaagccgaggT
i rheMac3.chr19             C 0 I 1441
s macFas5.chr19              55752268 228 +  59248254 ATCAGTGGAATAATT---TTCTTTAGGAAGAGCAGCCTTGAgccaggcatggtggcacatgcctggaatcccaggactttgggaagcccaggcaggtggattgcttgagcttccacctgcctgggagttccagaccagcctgaacaacatgacaaaacctcatctcaataaaaTATACCAAATTTCGATTGAGCCTGGTGGctgtaatcccagcatgttgggaagccgagg-
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I

a score=70725.000000
s hg38.chr19_GL949751v2_alt    873933 211 +   1002683 gggtgaatcatttgaggtcagaccagcctgactaacatggcgaaaccccatctctacaaaaaatacaaaagttagccagga--ggtcgtgggcgcctgtggtcccagctactcgggaggctgaggcaggagaatgacgtgaatcccggagtcgtaggttgcagtgagccaagatcgtgccactgcacttcagcctgggcgacacagcaagact
s panTro4.chr19              59872746 211 +  63644993 gggtgaataatttgaggtcagaccagcctgactaacatggcgaaaccccatctctacaaaaaatacaaaagttagccagga--ggtcgtgggcgcctgtggtcccagctactcgggaggctgaggcaggagaatgacgtgaaccccggagtcgtaggttgcagtgagccaagatcgtgccactgcacttcagcctgggcgacacggcaagact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56792543 211 +  60714840 gggtgaatcatttgaggtcagaccagtctgactaacatggtgaaaccccatctctactaaaaatacaaaaattagccagga--ggtggtgggcgcccgtggtcccagctactcgggaggctgaggcagaagaatggtgggaacccgggaggcggagcttgcagtgagccgagatcatgccactgcactccagcctgggcgaaagagcaagact
i ponAbe2.chr19             C 0 I 1814
s macFas5.chr19              55752496 139 +  59248254 ----------tttgaagtcagaccagc----ctaacatggtgaaaccccatgtctactaaaaatacaaaaattagccaggcatgggggtgaacgtccataatctcagctactcgggaggctgaggcatgacaatcacttgaacccgggaggct------------------------------------------------------------
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=212369.000000
s hg38.chr19_GL949751v2_alt    874144  984 +   1002683 gaggttgcagtgagctgtgatcctcaacctcctgggttcaagggattgtcgagcctcagcctcccaagtagctgggattatagacattcgctcccatgcctggctaatttttgtattGCAAAAATGCACTCCagcctagatgacaggactgcactccagcctggatgacagagcaagactgtgtctcaaaaataaataaataaataaataaataGCCAACTgtgatcgtgcatgcctgtagtcccagctactcaggaggccaaggcaggaggatcacttgagactgggaggtcatggctacagtgagccatgatctcgcaactgcactccagcctgggcaacagagggagaGA--------------------------------------------------------------------------------------------------------------------aaggaaggaaggagggaaggagggaaggagggaagggaaggagggaaaggaagtcagtcttgtgggacaaggaaggaaggaagga----agTCAGTcagtcttgtgggactcagccctgaacctttgggatctgatgctgtccccaggtagggagtgtcagaactaaatcaaaggagaggacacccagctggtctctgctggagaactggttgttggtggggagaaacatacatttttggtgaagtattctgtgttgagtgtgaaagtaggaaaaacaGgactgggtatggtggttcatgcctgtcattccaggattttgggaggccaaggcaggcggatcacttgaggtcaggactttgagaccaccctggtgaacatggcaaaaccccatctctactaaaaaaaaatacaaaaattagctgggcgcggtggcaggtgcctgtaataccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctgagattgtgcctttgcactccagcctgggagacagagcaagactctccctcaaaa--aaaaaaaaaggccgggcgcagtggctcacgcctataatatcagcactttgggaggccgaggcaggT
s panTro4.chr19              59872957  990 +  63644993 GGGGTTGCAGTGAGCTGTGATcctcaacctcctgggttcaagggattgtcgagcctcagcctcccgagtagctgggattatagatgttcgctcccatgcctggctaatttttgtatCGCAAAAATGCACTCCagcctagatgacaggactgcactccagcctggatgacagagcaagactgtgtctcaa----aaataaataaataaataaataGCCAACTgtgatggtgcatgcctgtagtcccagctactcgggaggccaaggcaggaggatcacttgagactgggaggtcacggctacagtgagccgtgatctcgcaactgcactccagcctgggcaacagagggagaGAaag------------------------------------------------------------------------------------------------------------gaaggaaggaaggaaggagggaaggagagaaggagggaagggagggagggaaaggaagTCAGTCTTGTGGGACAAGGAAGGAAGGAAGGAAGTCAGTCAGTcagtcttgtgggactcagccctgaacctttgggatctgatgctgtccccaggtagggagtgtcagaactaaatcaaaggagaggacacccagctggtctctgctggagaactggttgttggtggggagaaacatacatttttggtgaagtattctgtgttgagtgtgaaagtaggaaaaacaGgactgggcatggtggctcatgcctgtcattccaggattttgggaggccaaggcaggcggatcacttgaggtcaggactttgagaccaccctggtgaacatggcaaaatcccatctctact--aaaaaaatacaaaaattagctgggcgcggtggcaggtgcctgtaataccagctactcgggaggctgaggcaggggaatcacttgaacccgggaggcggaggttgcagtgagctgagattgtgcctttgcactccagcctgggagacagagcaagactctccctcaaaa--aaaaaaaaaggccgggcgcagtggctcacgcctataatatcagcactttgggaggccgaggcaggT
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55752635 1014 +  59248254 gaggttgcagtgaactgtgatcATCAACAC---------------------------------------------AATTGCAAAAA------------------------TTGCAATACAAAAATGCACTCCAGCCTAGATGACAGGACTGCACTccaggctggatgacagagcaagactgtgtctcaa-------taaataaataaataaatagccaactgtgatggtacatgcctctagtaccagctactcaggaggccaaggcaggaggatcatttgagactgggaggtaaaggctgcagtgagccgtgatctcgtaactgcactccagcctgggcaacagagggagaGgaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagaagagaagagaaggagaaagagagagagagagagagaGAGggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg--aaggaaggaag------gaaggaaggaaggaaggaagga----ag---ggcagtcttgtgggactcagccctgaacctgtgggatctgatgctgtccccaggtagagagtgtcagaaccgaaccaaaggagaggacacccagctggtctctgctggagaactggttgttggtggggagaaacaaacatttttggtgaagtattctgtgttgagtgtgaaagtaggaaaaacaGggccgggcgccgtggcgcatgcctgtcatcccaggattatgggaagccagggcaggcagatcacttgaggtcaggactttgagactaccctggtgaacatggcgaaatcccatctctaat-taaaaaaatacaaaaattagctgggcgcagtggagcgcacctgtaataccagctactccggaggatgaggcaggagaatcacttgaatctgggaggcggaggttacagtgagccgagattgtgccactgctctccagcctgggagatagagcaagactccatctcaaaaacaaacaaaCAggccaggcgctgtggctcaagcctgtaatcccagcactttgggaggccgagacgggc
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102637494    0 + 122678785 I
e ponAbe2.chr19              56792754 1814 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726  246 - 106955855 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=3645.000000
s hg38.chr19_GL949751v2_alt    875128 7 +   1002683 ggatcac
s panTro4.chr19              59873947 7 +  63644993 ggatcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56794568 7 +  60714840 ggattac
i ponAbe2.chr19             I 1814 C 0
s macFas5.chr19              55753649 7 +  59248254 ggatcac
i macFas5.chr19             C 0 I 584
e canFam3.chr1              102637494 0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=610591.000000
s hg38.chr19_GL949751v2_alt    875135 2366 +   1002683 tgacacccaacaccacgccttctaattttttgcatttttagtagaaacggggtttcaccatgttggccaggcttgtctcgaactcctgtcctctggtgatccacctgccttggcctcccaaagtgctggaattacaggcgtgaaccCAGCAACTTTTCCCCCTTTTATCATACCTTAATTTGCCTCCACCACCCCCAGAAGCTCCAAGTCTCTACGCCTTTTCatttatgtatgtatgtatttatttatttatttatttattttattttgagacagggtctccctctatctcccaggctgcagtgcagtggcgtgatcttggcccactgcaacctccacctcccgggttcaagtaatcctcctgtctcagcct----cccaagtagctgggattacagggcacaccaccacacctggctaatttttgtatttttagtggagactgggtttcaccctgttgtccaggctagtctcaaactcccgacgtcaggtgatccacccatttcggttcccaaagtgttgagattacagaccgtgagccactgGGACG---GACACCCCTACTCCTTTCttcttcttc-------ttctttttttttttttttttgagatggagtctccctttgaagcccaggctggagtacaatggtgcgat-----cttagctcactgcagtttcctcctcccgggttcaagtgattctcctgcctcagcctccggagtagctgggattacaggcacacaccaccacaccagctaatttttgtatttttagcagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccaccttggcctcccaaactgctgggatcacaggcgtgagccactgcacccTACACTCTTAtactcctttctgtagctcaggcagctagatgagcttcaatcatctggcccttcctccagtctcacatttttgtgggactcctgtgcatacataattgaatctggtttttcttctgtcaaactgttttgtgtcaatgtaattcatagcccatccaaagaacctaggagggtggagggaatccattttctctcctccacaCTggagggccatggagcccaagagttcaagactggcccggtgtacaaagtgagacccagtctctatttaaaaaaGATGGGGAGGGggccgggcacggtgtctcacgcctgtaattccagcactttgggaggcccaggtgggtggatcacctgaggtcaggagtccgagactagcctggccaaggtggtgagaccgtgtctttactaaaaatacaaaattagcttggtatggtggcaggagcctgtaatcccagctacttggaaggctagggcaggagaatcgcttgGTTTGGGATTTTCTCCCTGAGGCACTTGCTATCTCCAGGATTATGGGTCTCAGGTGAAagaaagacaaagaaggagagagagac--agagagggacagggaaagagaaTTTCAGACTTATCTAACATTGACACTTAGGAGAAGTAGGGAGAAAGAGGTGGGAAAATAAAGTGGCTAGGTAAAAATGAACATGTCAGTAACAATAATAGCATTAACAATAACTAGTATTgccgggtgcagtggctcacgcctctaatcccagcactttgggacgccgaggtgggcgaatcacaaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaagttagctagctgggcatagtggtgcatgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaacccgggaggcaaaggttgcagtgagtcaagatcaggccactgcactccagcccaagggacagagtgagactctgtctca------------------aataataataataataataaCTAGTggccaggcacagtggctcacgcctgtaatcccagtgtagcaggacgagccacagacaaaaacctctcagacaccgagttgtagaaggaagggc-tttattcagctgggagcatcggcaagctactgtcttaaaatccaagctcctcgagtgcacagtttctgtcccttttaagggctcacaacactaaagactgcgcatgaaagggtca----tgattgagcaatctaggggatacataacaggggtttcgtgcactgctggtcagagagaa--agaatagggcagggagtttcacagtgttcttctatacaatgcctggaatctatggataacatcgggttctaagtcatgagttgatttttatctactaggtttacgccaggcaggcccaggcctggtttcgggtctggttttgggtctggtgcctggcgccgggctacctgcctttggtttcacttccttgtttttttct
s panTro4.chr19              59873954 2364 +  63644993 tgacacccaacaccacgccttctaattttttgcatttttagtagaaacggggtttcaccatgttggccaggcttgtctccaactcctgtcctctggtgatccacctgccttggcctcccaaagtgctggaattacaggcgtgaaccCAGCAACTTTTCCCCCTTTTATCATACCTTAATTTGCCTCCACCACCCCCAGAAGCTCCAAGTCTCTACGCCTTTTCATTTATGTATGTATG----------------TATGTAttttattttgagacagggtctccctctatctcccaggctgcagtgcagtggcgtgatcttggcccactgcaacctccgcctcccgggttcaagtaatcctcttgtctcagcct----cccaagtagctgggattacagggcacaccaccacacccggctaatttttgtatttttagtggagactgggtttcaccctgttgtccaggctagtctcaaactcctgacgtcaggtgatccacccatttcggttcccaaagtgttgagattacaga-cgtgagccaccgGGACG---GACATCCCTACTCCtttcttcttcttc-------------ttttttttttttttgagatggagtctccctttgtagcccaggctggagtacaatggtgcgat-----ctcagctgactgcaacctccgcctcctgggttccagtgatcctcctgcctcagcctccagagtagctgggattacaggaacacaccaccacaccggctaatttttgtatttttagcagagatggggtttcatcatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacgttggcctcccaaagtgctgggatcacaggcgtgagccacctcacccTACACTCTTAtactcctttctgtagctcaggcagctagatgagcttcaatcatctggcccttcctccagtctcacatttttgtgggactgctgtgcatacataattgaatctggtttttcttctgtcaaactgttttgtgtcaatgtaattcatagcccatccaaagaacctaggagggtggagggaatccattttctctcctccacaCTggagggccatggagcccaagagttcaagactggcccggtgtacaaagtgagacccagtctctatttaaaaaaGATGGGGAGGGggccgggcacggtgtctcacacctgtaattccagcactttgggaggcccaggtgggtggatcacctgaggtcaggagtccaagactagcctggccaaggtggtgagaccgtgtctttactaaaaatacaaaattagcttggtatggtggcaggagcctgtaatcccagctacttggaaggctagggcaggagaatcgcttgGTTTGGGATTTTCTCCCTGAGACACTTGCTATCTCCAGGATTATGGGTCTCAGGTgaaagaaagacaaagaaggagagagagacagagagagggacagggaaagagaATTTCAGACTTATCTAACATTGACACTTAGGAGAAGTAGGGAGAAAGAGGTGGGAAAATAAAGTGGCTAGGTAAAAATGAACATGTCAGTAACAATAATAGCATTAACAATAACTAGTATTgccgggtgcggtggctcacgcctctaatcccagcactttgggatgccgaggtgggcgaatcacaaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaagttagctagctgggcatagtggtgcatacctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaacccgagaggcaaaggttgcagtgagtcaagatcaggccactgcactccagcccaagggacagagtgagactctgtctcaaataataataataataataataataataataataataaCTAGTggccaggcacagtggctcacgcctgtaatcccagtgtagcaggacaagccacagac-aaaacctctcagacaccgagttgtagaaggaagggc-tttattcagctgggagcatcggcaagctactgtcttaaaatccaagctcctcgagtgcacagtttctgtcccttttaagggctcacaacactaaagactgcgcatgaaagggtcg----tgattgaacaatctaggggatacgtaacaggggtttcgtgcactgctggtcagagagaaacagaacagggcagggagtttcacaatgttcttctatacaatgcctggaatctatggataacatcgggttctaagtcatgagttgatttttatctactaggtttacgccaggcaggcccaggcctggtttcgggtctggttttgggtctggtgcctggtgcccggctacctgcctttggtttcacttccttgtttttttct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56794575 2374 +  60714840 tgacacctaccaccacgcctgctaattttttgtatttttagtataaagggggtttcaccatgttggccaggcttgtctcgaactcctgtcctctggtgatccacctgcctcggcctcccaaagtgctggaattacaggcatgaaccCAGCAACTTttcccccttttatcataccttaatttgcctccaccacccccagaagctccaagtctctactccttttcatgtatgtatgtatg----tatgtatgtatgtatttattttattttgagacagggtctccctctatcttccaggctggagtgcagtggcgtgatcttggcccactgcaacctccacctcccaggttcaagtaatcctcctgtctcagcctcccgcccgagtagctgggattacagggcacaccaccacgcctggctaatttttgtatttttagtggagaccgggtttcaccctattgtccaggctagtctcaaactcctgatgtcaggtgatccacccatttcggttcccaaagtgttgagattacaga-cgtgagccatcgggacggacgacacccctacttctttcttcttcttctttttttttttttttttttttttttttgagatggagtctccctttgtagcccaggctggagtacaatggtgcgatctcagctcagctcactgcagtttcctcctcccgggttcaagtgattttcctgcctcagcctccagagtagctgggattacaggcacgtaccaccacactggctaatttttgtatttttagcagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcagaagatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgcaccctacacttt--tactgctttctgtagctcaggcagctaaacgagcttcaatcatctggcccttcctccagtcccacatttttgtgggattcctgtgcatacacaattgaatctggtttttcttctgtcagactgttttgtgtcaatgtaattcacaacccatccaaagaacctaagagggtggagggaatccattttctctcctccacaCTggagggccatggagcccaggagttcaagaccggcccagtgtacaaagtgagacccagtctctagttaaaaaagaGGGGGAGGGagccgggcacagtgtctcacgcctgtaattccagcactttgggaggcccaggtgggtggctcacctgaggtcaggagtccaagaacagcctggccaaggtggtgaaaccccatctttactaaaaatacaaaattagcttggtatggtggcaggagcctgtaatcccagctacttggaaggctagggcagcagaatcacttgGTTTGGGATTTTCTCTCTGAGACACTTGCTATCTCCAGGATTATGGGTCTCAGGTgaaagaaagacacagaaggagagagagacagagagagggacaggaaaagagaATTTTAGACTTATCTAACATTGACACTTAGGAGAAGTAGGGAGAAAGAGGTGGGAAAATAAAGTGCCAAGGTAAAAATGAACACGTCAGTAACAATAATAGCATTAACAATAACTAGTATTgccgggtgtggtggctcacgcctctaatcccagcactttgggatgccaaggcgggcgaatcatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaagttagctagctgggcacagtggtgcacgcctgtaatcccagctactagggaggctgaggcaggaggatcgcttgaacccgggaggcaaaggttgcagtgagtcaagatcaggccactgcactccagcccaagggacagagtgagactctgtctca------------------aataataataataataataaCCAGTggccaggtgcagtggctcacacctgtaaccccagtgtagcaggacgagccacagac-aaaacctctcagacacagagttgtagaagaaagggcttttattcagctgggagcatcggcaagctactgtcttaaaatccaagttcctcgagtgcacaatttctgtcccttttaagggctcacaacactaaagattgtgcacgaaagggtcgtgattgattgagccatctaggggatacgtaacaggggtttcatgcactggtggtcagagtgaaacagaacagggcagggagtttcacaatgttcttctatacaatgcctggaatctgtggataacatcgggttctaagtcatgagttgatttttatctactaggttgacgccaggcaggcccaggc------------ctggttttgggtctggtgcctggcgccgggctgcctgcctttggtttcacttgcttgcttttttct
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1              102637494    0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726  246 - 106955855 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e macFas5.chr19              55753656  584 +  59248254 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=26207.000000
s hg38.chr19_GL949751v2_alt    877501 298 +   1002683 ttttc--------------------------------tttttttttttttttgagacagagtcttgctctgtcgctaaggctggagtgcagtggcacaatctcggctcactgcaagctccgcctcctggattcaagcaattctgctgcctcatccttccgagtagctgggattacaggcgcacgccaccatgcccggctaatttttgtatttttaatagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccgg
s panTro4.chr19              59876318 330 +  63644993 ttttctttttctttttttttttctttttctttttctttttttttttctttttgagacagagtcttgctctgtcgcttaggctggagtacagtggcgcaatctcggctcactgcaagctccgcctcctggattcaagcaattctgctgcctcatcctcccgagtagctgggattacaggcgcacgccactatgcccggctaatttttgtatttttaatagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccgg
i panTro4.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56796949   0 +  60714840 C
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103312726 246 - 106955855 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e macFas5.chr19              55753656 584 +  59248254 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=3791.000000
s hg38.chr19_GL949751v2_alt    877799 17 +   1002683 cctccttgttttttttc
s panTro4.chr19              59876648 17 +  63644993 cctccttgtttttttct
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103312972 17 - 106955855 cttccttgcttttttct
i nomLeu3.chr10             I 246 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56796949  0 +  60714840 C
e calJac3.chr22              45914405 7610 +  49145316 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e macFas5.chr19              55753656 584 +  59248254 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=32374.000000
s hg38.chr19_GL949751v2_alt    877816 62 +   1002683 taaaacaagtactgagtataaaacaatataaaacaatatgagacggtttctctcttccctca
s panTro4.chr19              59876665 62 +  63644993 taaaacaagtactgagtataaaacaatataaaacaatatgagacggtttctctcttccctca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56796949 62 +  60714840 taaaacaggtactgagtataaaacaatatagaacaatatgagagggtttctctcttccctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103312989 62 - 106955855 taaaacaggtactgagtataaaacagtataaaacaatatgagagggtttctctctttcctca
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e chlSab2.chr6               47566336 1756 +  50890351 I
e papAnu2.chr19              47853881 5245 +  51301725 I
e macFas5.chr19              55753656 584 +  59248254 I
e rheMac3.chr19              60612254 1441 +  64156825 I

a score=72867.000000
s hg38.chr19_GL949751v2_alt    877878 58 +   1002683 ccagcactttgggaggctgaggcaggtggatcacaaggtcagAGTGGAT--------------agcacttta
s panTro4.chr19              59876727 58 +  63644993 ccagcactttgggaggctgaggcaggtggatcacgaggtcagAGTGGAT--------------agcactttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56797011 72 +  60714840 ccagcacttcgagaggctgaggcgggtggatcacgaggtcagAGTGGATCATGAGGTCAGATcagcactttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103313051 55 - 106955855 ccagcacttcaggaggctgaggagggtggatcacaaggtca---tgaTc--------------agcactttg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60613695 54 +  64156825 ccagcactttgggaggctgaggcaggcagattatgaggtca----gATc--------------agcacttcc
i rheMac3.chr19             I 1441 C 0
s macFas5.chr19              55754240 53 +  59248254 ccagcactttgggaggctgaggcaggcagattacg-ggtca----gATc--------------agcacttcc
i macFas5.chr19             I 584 C 0
s papAnu2.chr19              47859126 54 +  51301725 ccagcactttgggaggctgaggcaggcagattacgaggtca----gatC--------------AGCACTTcc
i papAnu2.chr19             I 5245 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e chlSab2.chr6               47566336 1756 +  50890351 I

a score=327855.000000
s hg38.chr19_GL949751v2_alt    877936 134 +   1002683 ggaggttgaggtgggaggatcccttgagcccaggagctcaagtccagcctgggcaacatagcaagacccccatttccaattttagtgtatgtgctgccaaagcaaatacTCTGAGACCCTGTTTCTACAAAAAA
s panTro4.chr19              59876785 134 +  63644993 ggaggttgaggtgggaggatcccttgagcccaggagctcaagtccagcctgggcaacatagcaagacccccatttccaaTTTTAGTGTATGTGCTGCCAAAGCAAGTACTCTGAGACCCTGTTTCTACaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56797083 128 +  60714840 ggaggttgaggtgggaggaccccttgagcccaggaactcaagtccagcctgggcaacatagcaagaccccCATTTCCAATTTTA------GTGCTGCCAAAGCAAGTACTGTGAGACCCTGTTTCTACAAAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103313106 134 - 106955855 ggaggttgaggtaggaggatcccttgagcccaggagctcaagtccagcctgggcaacatagcaagaccccCATttccgattttagtgtacgtgctgccaaagcaagtacTGTGAGACCCTGTTTCTACAAAAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60613749 134 +  64156825 ggaggttgaagtgggaggatccagtcagcccaggagctcgagtacaacctgggcaacatagcaagaccccCATttccgattttagtatatgtgctgccaaagcaagtacTGTGAGACCCTGTTTCTACAAAAAA
i rheMac3.chr19             C 0 I 10
s macFas5.chr19              55754293 134 +  59248254 ggaggttgaagtgggaggatcccttgagcccaggagctcaagtccaacctgggcaacatagcaagacccccatttccgattttagtatatgtgctgccaaagcaagtactgtgagaccctgtttctacaaaaaa
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47859180 134 +  51301725 ggaggttgaagtgggaggatcccttgagcccaggagctcaagtccaacctgggcaacatagcaagacccccatttccgattttagtatatgtgctgccaaagcaagtactgtgagaccctgtttctacaaaaaa
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               47568092 134 +  50890351 ggaggttgaagtgggaggatcccttgagcctaggagctcaagtccaacctgggcaacatagcaagaccccCATttccgattttagtgtatgtgctgccaaagcaagtacTGTGAGACCCTGTTTCTACAAAAAA
i chlSab2.chr6              I 1756 I 1
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I

a score=21675.000000
s hg38.chr19_GL949751v2_alt    878070 82 +   1002683 TAAAAAAATTAAAATTAGT-GCTTGG----AAAAAAAAATTAGTGCTTGACCAGGAGGCAAGCACACCTCCTCATCCTCTCATGGAT
s panTro4.chr19              59876919 82 +  63644993 taaaaaaattaaaa-taGT-GCTTGG---AAAAAAAAAATTAGTGCTTGACCAGGAGGCAAGCACACCTCCTCATCCTCTCATGGAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56797211 86 +  60714840 TGAAAAAATAAAAATGAGT-GCTTGGAAAAAAAAAAAAAAAAGTGCTTGGCCAGGAGGCAAGCACACCTCCTCATCCTCTCACGGAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103313240 84 - 106955855 TAAAAAAATAAAAATTAGT-GCCTGG--AAAAAAAAAAATTAGTGCTTGACCAGGAGGCAGGCACACCTCCTCATCCTCTCATGGAT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55754428 19 +  59248254 aaaaaaaaTAAAAATTAGT--------------------------------------------------------------------
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47859315 19 +  51301725 ttaaaaaataaaaattagt--------------------------------------------------------------------
i papAnu2.chr19             I 1 C 0
s chlSab2.chr6               47568227 20 +  50890351 GTAAAAAATAAAAATTAGTG-------------------------------------------------------------------
i chlSab2.chr6              I 1 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e rheMac3.chr19              60613883 10 +  64156825 I

a score=118359.000000
s hg38.chr19_GL949751v2_alt    878152 49 +   1002683 GTCTGTCTGTAGAAAGTAAATGGAGACAGCTTCATTTTACCCAACTGCT
s panTro4.chr19              59877001 49 +  63644993 GTCTGTCTGTAGAAAGTAAATGGAGACAGCTTCATTTTACCCAACTGCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56797297 49 +  60714840 GTCTGTCTGTAGAAACTAAACGGAGACAACTTCATTTTACCCAACTGCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103313324 49 - 106955855 GTCTGTCTGTAGAAACTAAATGGAGACAGCTTCATTTTACCCAACTGCT
i nomLeu3.chr10             C 0 I 321
s rheMac3.chr19              60613893 49 +  64156825 GTCTGTCTGTAGAAAATAAATGGAGACAGCTTCATTTTACCCAACTGCT
i rheMac3.chr19             I 10 C 0
s macFas5.chr19              55754447 47 +  59248254 --CTGTCTGTAGAAAATAAATGGAGACAGCTTCATTTTACCCAACTGCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47859334 47 +  51301725 --ctgtCTGTAGAAAATAAATGGAGACAGCTTCATTTTACCCAACTGCT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47568247 46 +  50890351 ---TGTCTGTAGAAAATAAATGGAGACAGCTTCATTTTACCCAACTGCT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I

a score=1641847.000000
s hg38.chr19_GL949751v2_alt    878201 727 +   1002683 CCGTTTTAGGTCCGCTCCTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGGGAGCCGACTCCCGGCTGCAGAG-----------------------CCTTGTCAGAAGCAGGCAATGTACACAGAGACCCAAGGCCTGGTGTAGACAGGCTTTCACAGACCTGGGCATTTTGTTGAATTGTTTTTGAATTGTGGTTTCTTATCAGTTCATCCGATACTCTGTTCTAACCACGTAGTTCCTCTTTTGGATCTCCAAACCCCTTTGCAGGTTCCATCTACCCGAACCAAACTCACTTATTCCAACAGAAGTCTGGTGTTTCTTGTTTTTTTTGtttgtttgtttctttcgttttgttttttgagatgttgtctccctctatcacccaggctggagtgcagtggcgagatctcagctcactgcaacctctgcttcccgggttcaagcaattctcctccctcagcctcctgggtagctgggattacaggtgcctgccgccacacccagctaacttttgtatttttagtagagacgggatttcaccatgttggccaggctagtctcgagctcctgacctcaagtgatccacccatctcagcctcccaaagtgctgggattacagccttaagccaccgcgctcaaccAGAAGTCTGTTTAAATCCATCCTTCTCCCCAgccacccatgagttatgtgaccttggggttgctacttaacatttcagtctcaatttcctcaatagaacaaaagttag
s panTro4.chr19              59877050 742 +  63644993 CCGTTTTAGGTCCGCTCCTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGGGAGCCAACTCCCGGCTGCAGACTGACAAGGCTGACAAGGCTGACTCCTTGTCAGAAGCAGGCAGTGTACACAGAGACCCAAGGCCTGGTTTAGACAGGCTTTCACAGACCTGGGCATTTTGTTGAATTGTTTTTGAATTGTGGTTTCTTATCAGTTCATCCGATACTCTGTTCTGACCACGTAGTTCCTCTTTTGGATCTCCAAACCCCTTTGCAGGTTCCATCTACCCGAACCAAACTCACTTATTCCAACAGAAGTCTGGTGTTTCTTGttttt--------tttgtttcttttgttttgttttttgagatgttgtctccctctatcgcccaggctgcagtgcagtggcaagatctcggctcactgcaacctctgcttcccgggttcaagcaattctcctccctcagcctcctgagtagctgggattacaggcgcctgccgccacacccagctaacttttgtatttttagtagagaccggatttcaccatgttggccaggctggtctcgagctcctgacctcaagtgatccacccatctcagcctcccaaagtgctgggattacagccttaaaccactgcgctcaaccAGAAGTCTGTTTAAATCCATTCTTCTCCCCAgccacccaagatttatgtgaccttggggttgctacttaacattacagtctcaatttcctcaATAGAACAAaagttag
i panTro4.chr19             C 0 I 1
s ponAbe2.chr19              56797346 723 +  60714840 GTGTTTTAGGTCCGCTCTTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGGGAGCCAACTCCCGGCTGCAGAA-----------------------CCTTGTTAGAAGCAGGCAATGTACACAGAGACCCAAGGCCTGGTTTAGACAGGCTTTCACAGACCTGGGCATTTTGTTGAATTGTTTTTGAATTGTGGTTTCTTATCAGTTCATCCAATACTCTTTTCTGGCCATGTAGTTCCTCTTTTAGATCTCCAAACGCCTTTGCAGGCTCCATCTACCCGAACCAAACTCACTTATTCCAACAGAAGTCTGGTTTTTCTTGGGTTT-TTGtttgtttgtttcttttgttttgttttttgagatgttgtctccctctatcgcccaggctggagtgcagtggcgagatctcggctcactgcaacct---cttcctgggttcaagcaattctcctccctcagcctcctgagtagctgggattacaggcgcccaccgccacacccagctaacttttgtatttttagtagagacgggatttcaccgtgttggccaggctggtctccagctcctgaactcaagtgatccacccatcttggcctcccaaagtgctgagattacaggcttaagccactgcgctcagccAGAAGTCTGTTTAAATCCATCCTTCTCCCCAgccacccatgagttatgtgaccttggggttgctacttaacatttcagtctcaatttcctcaATACAACAAAAGTTAG
i ponAbe2.chr19             C 0 I 1
s nomLeu3.chr10             103313694 721 - 106955855 cggccCTAGGTCCACTCTTGAGCTTCTGTTGTTCCCAGTCATGCAACCCTGGGAACCGACTCCTGGCTGCAGAG-----------------------CCTTGTCAGAAGCAGGCAATGTACACAGAGACCCAAGGCCTGGTTTAGACAGGCCTTCACAGACCTGGGCATTTTGTTGAATTGTTTTTGAATTGTGGTTTCTTATCAGTTCATCCAATACTCTGTTCTGGCCACGTAGTTCCTCTTTTGGATCTCCAAACGCCTTTGCAGGCTCCATGTACCCGAACCAAACTCACTAATTCCAACAGAAGTCTGGTTTTTCTTGTTTTT---GtttgtttgtttgttttgttttgttttttgagatgttgtctccctctatcgcccaggctggagtgcagtggcaagatctcgactcactgcaacctctgcttcccaggtgcaagtaattctcctccctcagcctcctgagtaggtgggattacaggcgcccactgccatgcccagctaacttttgtatttttagtagagatgggatttcaccatgtgggccaggctggtctcgagctcctgacctcaagtgatccacccacttcggcctcccaaagtgctgggattacagctgtaagccaccatgctcagccAGAAGTCTGTTTAAATCCGTCCTTCTCCCTAgccacccatgagttatgtgaccttgtggttgctacttaacatttcagtctcaatttcctcaatagaacaaaagc---
i nomLeu3.chr10             I 321 C 0
s rheMac3.chr19              60613942 701 +  64156825 GTGTTTTAGGTCTGCCCTTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGAGAGCCGACTCCTGGCTGCAAAG-----------------------CCTTGTTAGAAGCAGGCAATGTACACAGAGACCCAAGGCCTGATTTAGACAGGCTTTCACAGACCTGGGCATTTTGTTGAGTTGTTTTTGAATTGTGGTTTCTTATCAGTTCATCCAATACTCTGTTCTGACCACGTAGTTCCGCTTTTGGATCTCCAAACGCCTTTGCAGGCTCCATCTACCCGAACCAAACTCATTTATTCCAACAGAATTCTGG------------------------GGtttgttttgttttg--tgttgagaccttgtctccctctattgcccgggctggagtgcagtggcgagatctcggcttattgtggcctccccttcctgggttcaagcaattctcctccctcagcctcctgaatagctgggattacaggcacctgctgccacacccagctaacttttgtatttttagtacagacgggatttcaccatgttgaccaggctggtctcgagctcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacagccatgagccaccacgctcagccAGAAGCCTGTTTAAATCCATCCTTCTCCCTAgccacccatgagttatgtgatcttggggttgctacttaccatttcagtctcaatttcctcaAtagaacataagttag
i rheMac3.chr19             C 0 I 1276
s macFas5.chr19              55754494 701 +  59248254 GTGTTTTAGGTCTGCCCTTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGAGAGCCGACTCCTGGCTTCAGAG-----------------------CCTTGTTAGAAGCAGGCAATGCACACAGAGACCCAAGGCCTGATTTAGACAGGCTTTCACAGACCTGGGCATTTTGTTGAATTGTTTTTAAATTGTGGTTTCTTATCAGTTCATCCAATACTCTGTTCTGACCACGTAGTTCCGCTTTTGGATCTCCAAAAGCCTTTGCAGGCTCCATCTACCCGAACCAAACTCATTTATTCCAACAGAAGTCTGG------------------------GGtttgttttgttttg--ttttgagaccttgtctccctctattgcccaggctggagtgcagtggcgagatctcggcttattgtgacctccccttcctgggttcaagcaattctcctccctcagcctcctgaatagctgggattacaggcacctgctgccacacccagctaacttttgtatttttagtacagacgggatttcaccatgttgaccaggctggtctcgagctcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacagccatgagccaccacgctcagccAGAAGCCTGTTTAAATCCATCCTTCTCCCTAgccacccatgagttatgtgatcttggggttgctacttaccatttcagtctcaatttcctcaAtagaacataagttag
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              47859381 701 +  51301725 GTGTTTTAGGTCTGCCCTTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGAGAGCCGACTCCTGGCTGCAGAG-----------------------CCTTGTTAGAAGCAGGCAATGTACACAGAGACCCAAGGCCTGATTTAGACAGGCTTTCACAGACCTGGGcattttgttgaattgtttttGAATTGTGGTTTCTTATCATTTCATCCAATACTCTGTTCTGGCCACGTAGTTCCTCTTTTGGATCTCCAAACGCCTTTGCAGGCTCCATCTACCCGAACCAAACTCATTTATTCCAACAGAAGtctgg------------------------ggtttgttttgttttg--ttttgagaccttgtctccctctatcgcccaggctggagtgcagtggcaagatctcggcttaTTGtgacctccccttcctgggttcaagcaattctcctccctcagcctcctgaatagctgggattacaggcacctgccgccacacccagctaacttttgtatttttactacagacgggatttcaccatgttgaccaggctggtctcgagctcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacagccgtgagccactatgctcagccagAAGTCTGTTTAAATCCATCCTTCTCCCTAGCCACCCATGAGTTATGTGATCTTGGGGTTGCTACTTACCATTTCAGTCTCAATTTCCTCAATAGAACATAAGCTAG
i papAnu2.chr19             C 0 I 1
s chlSab2.chr6               47568293 701 +  50890351 GCGTTTTAGGTCTTCCCTTGAGCTTCTGTTGTTCCCAGCCATGCAACCCTGAGAGCCGACTCCTGGCTGCAGAG-----------------------CCTTGTAAGAAGCGGGCAATGTACACAGAGACCCAAGGCCTGGTTTAGACAGGCTTTCACAGACCGGGGCATTTTGTTGAATTGTTTTTGAATTGTGGTTTCTTATCAGTTCATCCAATACTCTGTTCTGGCCACGTAGTTCCTCTTTTGGATCTCCAAACCCCTTTGCAGGCTCCATCTACCCGAACCAAACTCACTTATTCCAACAGAAGTCTGG------------------------Gttttgttttgttttg--ttttgagaccttgtctccctctgttgcccaggctggagtgcagtggcgagatctcggtttattgtgacctccccttcctgggttcaagcaattctcctccctcagcctcctgaatagctgggattacaggcacctgccgccacacccagctaacttttgtatttttagtacagacgggatttcaccatgttgaccaggctgatcttgagctcctgacctcaagtgatccacccacctcggccccccaaagtgctgggattatagccgtgagccaccacgctcagccAGAAGTCTGTTTAAATCCATCCTTCTCCCTAGCCACCCATGAGTTATGTGATCTTGGGGTTGCTACTTACCATTTCAGTCTCAATTTcctcaatagaacataagttag
i chlSab2.chr6              C 0 I 8
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I

a score=2360.000000
s hg38.chr19_GL949751v2_alt    878928 7 +   1002683 aagaatt--
s panTro4.chr19              59877793 5 +  63644993 aagaa----
i panTro4.chr19             I 1 C 0
s ponAbe2.chr19              56798070 5 +  60714840 AAGAA----
i ponAbe2.chr19             I 1 C 0
s nomLeu3.chr10             103314415 5 - 106955855 aagaa----
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55755196 7 +  59248254 aagaa--tt
i macFas5.chr19             I 1 C 0
s papAnu2.chr19              47860083 5 +  51301725 AAGAA----
i papAnu2.chr19             I 1 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e chlSab2.chr6               47568994 8 +  50890351 I
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=11813.000000
s hg38.chr19_GL949751v2_alt    878935 17 +   1002683 gtaACAAAAGATAGttt
s panTro4.chr19              59877798 15 +  63644993 -taacaaaagatag-tt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56798075 16 +  60714840 -TAACAAAAGATAATTT
i ponAbe2.chr19             C 0 I 36
s nomLeu3.chr10             103314420 16 - 106955855 -taACAAAAGATAATTT
i nomLeu3.chr10             C 0 M 2680
s papAnu2.chr19              47860088 16 +  51301725 -taacaaaagataattt
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e chlSab2.chr6               47568994  8 +  50890351 I
e macFas5.chr19              55755203  0 +  59248254 C
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=273.000000
s hg38.chr19_GL949751v2_alt    878952 1 +   1002683 t
s panTro4.chr19              59877813 1 +  63644993 t
i panTro4.chr19             C 0 C 0
s papAnu2.chr19              47860104 1 +  51301725 t
i papAnu2.chr19             C 0 I 295
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56798091 36 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e chlSab2.chr6               47568994 8 +  50890351 I
e macFas5.chr19              55755203 0 +  59248254 C
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=-247.000000
s hg38.chr19_GL949751v2_alt    878953 7 +   1002683 attttta
s panTro4.chr19              59877814 3 +  63644993 att----
i panTro4.chr19             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56798091 36 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e chlSab2.chr6               47568994 8 +  50890351 I
e papAnu2.chr19              47860105 295 +  51301725 I
e macFas5.chr19              55755203 0 +  59248254 C
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=66820.000000
s hg38.chr19_GL949751v2_alt    878960 297 +   1002683 tttttatttttattttttgagatggagtcttgctctgtcacctaggctggagtgcagtggtgtgatggtggctcactgcaagctccgcctcccggattcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccgtgcccagctaatttttttaatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatccgcttgcctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccag
s panTro4.chr19              59877817 297 +  63644993 tttttatttttattttttgagatggagtcttgctctgtcacccagactggagtgcagtggtgtgatcttggctcactgcaagctccgcctcccggattcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccgtgcccagctaatttttttaatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgacctc--gtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56798127 298 +  60714840 tttttttcttttttttttaagacagagtctggctctgttgcccaggctggagtgcaatggcgcaatcttggctcaccacaacctccgcctcctgggttggagcaatcctcctgtctcagccttccgagtagctgggattacaggtgtgcaacaccacacccggctaatttttgt-atttttagtagagatggggtttcaccattttggccaggctggtcttgaactcctgacctcaggtgacccacctacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccag
i ponAbe2.chr19             I 36 I 902
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e chlSab2.chr6               47568994   8 +  50890351 I
e papAnu2.chr19              47860105 295 +  51301725 I
e macFas5.chr19              55755203   0 +  59248254 C
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=100.000000
s hg38.chr19_GL949751v2_alt    879257 1 +   1002683 c
s panTro4.chr19              59878114 1 +  63644993 c
i panTro4.chr19             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56798425 902 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e chlSab2.chr6               47568994 8 +  50890351 I
e papAnu2.chr19              47860105 295 +  51301725 I
e macFas5.chr19              55755203 0 +  59248254 C
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=87397.000000
s hg38.chr19_GL949751v2_alt    879258 174 +   1002683 ACaaaagataatttcttaatcccatgcatttgagtcttaaaaaaatattctatataattccaaggtcaaagaagaaataacaaagggcatttttaaaaatgctagaactgagtggtggtgaaattgctgttgaaatgtgtttgttgcactgatggaaatttataaatgtaaata
s panTro4.chr19              59878115 174 +  63644993 acaaaagataatttcttaatcccatgcatttgagtcttaaaaaaatattctatataattctaaggtcaaagaagaaataacaaagggcattttttaaaatgctagaactgagtggtggtgaaattgctgttgaaatgtgtttgttgcactgatggaaatttataaatgtaaata
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55755203 173 +  59248254 acaaaagataatttcttagtcccatgtgtttgagtcttaaaaaaa-attctatataattcataggtcaaagaagaaataacaaagggtattttttaaaatgttagaactgagtggtggtgaaatagctgttgaaatgtgtgtgttgcactgatagaaacttataaatgtaaata
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47569002 173 +  50890351 acaaaagataatttcttagtcccatgtgtttgagtcttaaaaaga-attctatataattcataggtcaaagaagaaataacaaagggtattttttaaaatgttagaactgagtggtggtgaaatggctgttgaaatgtgtgtgttgcactgatggaaacttataaatgtaaata
i chlSab2.chr6              I 8 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56798425 902 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47860105 295 +  51301725 I
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=51963.000000
s hg38.chr19_GL949751v2_alt    879432 78 +   1002683 tttatatt-aaaatataaaaTAATGggccaggcatagtggctcacacctgtaatctcagtactttgggaggccaaggcg
s panTro4.chr19              59878289 78 +  63644993 tttatatt-aaaatataaaaTAATGggccaggcatagtggctcacacctgtaatctcagtactctgggaggccaaggcg
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55755376 77 +  59248254 tttatatt-aaaatataaaa-aaTGggccaggcatagtggttcacacctgtaatctcagtactttgggaggtcaaggcg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47860400 78 +  51301725 tctattttaaaaagaggggg-agggggccgggcacggtgtctcacgcctataattccatcactttgggacgcccaggtg
i papAnu2.chr19             I 295 C 0
s chlSab2.chr6               47569175 77 +  50890351 tttatatt-aaaatataaaa-aaTGggccaggcatagtggttcacacctgtaatctcagtactttgggaggtcaaggca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56798425 902 +  60714840 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=757385.000000
s hg38.chr19_GL949751v2_alt    879510 717 +   1002683 ggagggccat-ggagcccaggagttcaagaccggcccggtgtacaaagtgagacccagtctctagttaaaaaaGAGGGGGAGTGggccaggcacagtgtctcacgcctgtaattccagcactttgggaggccaaagcaggtggatcacccgaggtcaggagtccaaga-------------------------------ccagcccg-gccaaggtggtgaaaccccgtgtc---------tactaaaaa----tacaaaattagctt-----ggtatggtggcgggagcctataatccca------------gctagggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacaacagagagacttcatctctaaataaataaataaataaataaaagaaaaTACAAATTTTTT-AAAAAAGGTACTGTggctgggcgtggtggttcacacctgtaatcccagcactttgggaagccgaggcaggtggatctcagatcaggagttcaagaagagcctggccagcatggtgaaaacctatctgtactaaaaattagcctggcatggtggcaggtgcctgt--------------aggaggctgaggcaagagaattgcttgagccccggaggcagaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgagagtctgtctcaaaaaggaaaca-aaaaaaaaaGTACCTCCAAATTATGGTAGGGTGTCCATA
s panTro4.chr19              59878367 709 +  63644993 ggagggccat-ggagcccaggagttcaagaccggcccggtgtacaaagtgagacccagtctctagttaaaaaagaGGGGGAGAGggccggacacagtgtctcacgcctgtaattccagcactttgggaggccaaagcaggtggatcacccgaggtcaggagtccaaga-------------------------------ccagcccg-gccaaggtggtgaaaccccgtgtg---------cactaaaaa----tacaaaattagctt-----ggtatggtggcgggagcctgtaatccca------------gctagggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacaacagagagacttcatctc--------taaataaataaataaaggaaaatacaaaTTTTTT-TAAAAAGGTACTGTggctgggcgtggtggttcacacctgtaatcccagcactttgggaagccgaggcaggtggatctcagatcaggagttcaagaagagcctggccaacatggtgaaaacctatctgtactaaaaattagcctggcatggtggcaggtgcctgt--------------aggaggctgaggcaagagaattgcttgagccccggaggcagaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgagagtctgtctcaaaaaggaaaga-aaaaaaaaaGTACCTCCAAATTATGGTAGGGTGTCCATA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56799327 719 +  60714840 ggagggccat-gaagcccaggagttcaagacccgcccagtgtacaaagtgagacccagtctctaGTTAACAAAGAGGGGGAGGGggccgggcacggtgtctcacacctgtaattccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtccaaga-------------------------------ccagcccg-gccaaggtggtgaaaccccgtctc---------tactaaaaa----tacaaaattagctt-----ggtatggtggcgggagcctgtaatcccagctacttggaaggctagggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacaacagagagatttcatctc--------aaaataaataaataaaagaaaatacaaaTTTTTT-TAAAAAGGTACTGTggctgggcgtggtggttcacacctgtaatcccagcacttcgggaagccgaggcaggtggatctcagatcaggagttcaggaagagcctggccaacatggtgaaaacctatctgtactaaaaattagcctggcatggtggcaggtgcctgt--------------aggaggctga-gcaagagacttgcttgagacctggaagcggaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgagagtctgtctcaaaaaggaaac--aaaaaaaaaGTACCTCCAAATTATGGTAGGGTGCCCATA
i ponAbe2.chr19             I 902 C 0
s macFas5.chr19              55755453 737 +  59248254 ggagggccat-ggagcccaggagttcaagaccagcccggtgtacaaagggagacccagtctctatttaaaaaaGAGGGGGAGGGggccgggcacggtgtctcacgcctgtaattccatcactttgggacgcccaggtgggtagatcatctgaggtcaggagtccgaga-------------------------------ccagcctg-gccaaggtggtgaaacactgtctc---------tactaaaag----tacaaaattagctt-----ggtatggtggcgggaacctgtaatcccacctgcttggaaggctagggcgggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctgtgcaacaacagcgagactctgtctc--------aaaataaataaataaaagaaaaTACATTTTTTTTTAAAAAAGGCACTGTgactgggcatggtggttcacacctgtaatcccagcactttgggaagacgaggcaggtggatctgagatcaggagttcaagaagagcctggccaacatggtgaaataccgtctctgctaaaaattagcctggcatggtggcaggcgcctgtaatcccagctacccaggaggctgaggcaggagaattgcttgaacccaggaggcagagattgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagctagactctgtctcaaaaaggaaacaaaaaaaaaaGGTATCTCCAAATTATGGTAGGGTGTCCATA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47860478 713 +  51301725 ggtggatcatctgaggtcaggagtccgagaccagcctggccaaggtggtgaaaccctgtctctactaaaaataca----aaattagcttggtatggtggcaggagcctgtaatcccagctgcttggaaggctagggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctgtgcaacaacagtgagacgctgtctcaaaataaataaataaaagaaaatacaaattttttttaaaaaggcactgTGACgtaaa----------------------------------------------aacccaggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcgac-acagcgagactccgtctc--------aaaaaaaaaaaaaaaaa------------------aaaaaaggcactgtgactgggcatggtggttcacacctgtaatcctagcactttgagaagccgaggcaggtggatctgagatcaggagttcaagaagagcctggccaacatggtgaaataccatctctactaaaaattagcctggcatggtggcaggtgcctgtaatcccagctacccaggaggctgaggcaggagaattacttgaacctgggaggcagagattgcagtgagccgagatcacgccactgcactccagcctgggcaacagagcgagactctgtctcaaaaagg------aaaaaaaaggtacCTCCAAATTATGGTAGGGTGTCCATa
i papAnu2.chr19             C 0 M 526
s chlSab2.chr6               47569252 733 +  50890351 ggagggccat-ggagcccaggagttcaagaccagcctggtgtacaaacggagacccagtctctatttaaaaaaGAGGGGGCGGGggccgggcacggtgtctcacgcctgtaattccatcactttgggacgcccaggtgggtggatcatctgaggtcaggagtccgaga-------------------------------ccagcctg-gccaaggtggtgaaacactgtctc---------tactaaaag----tacaaaattagctt-----ggtatggtggcgggagcctgtaatcccacctgcttggaaggctagggcgggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctatgcaacaacagtgagactctgtctc--------aaaataaataaataaaagaaaatacaaaaTTTTTTTTAAAAGGCATTGTgactgggcatggtggttcacacctgtaatcccagcactttgggaagccgaggcaggtggatctgagatcaggagttcaagaagagcctggccaacatggtgaaataccgtctctgctaaaaattagcctggcatggtggcaggcacctgtaatcccagctacccaggaggctgaggccggagaattgcttgaacccaggaggcagagattgcagtgagccgagatcacgccactgcactccagcctgggcaacagagctagactctgtctcaaaaagg----aaaaaaaaaaGGTATCTCCAAATTATGGTAGGGTGTCCATA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=258713.000000
s hg38.chr19_GL949751v2_alt    880227 301 +   1002683 TTAAGAAGGTAGAAAAAggtcgggggaagtgg---atgcctgtaatcccagaactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaagaacagcctggccaaaagggtatggtgaaaccccatctctactagaactacaaaattagccgggcgtggtggtacatgcctgtaatcccagctacacaggagtctgaggcaggagaatcacaggaaaccggcaggcagaggttgcagtgagctgagatcgcgccattgcactccagcctgggcgacaagagcaaaactccatctc
s panTro4.chr19              59879076 304 +  63644993 TTAAGAAGGTAGAAAACGGTGGGGGGAAgtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaagaacagcctggccaacagggtatggtgaaaccccgtctctactagaactacaaaattagccaggcgtggtggtacctgcctgtaatcccagctacacaggagtctgaggcaggagaatcacaggaaaccggcaggcagaggttgcagtgagctgagatcgcaccattgcactccagcctgggcgacaagagcaaaactccatctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56800046 304 +  60714840 TTAAGAAGATAGAAAAAAGTGGGGGGAAgtggctcgtgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaagaacagcctgaccaacagggtatggtgaaaccccgtctctactagaactacaaaattagccgggcatggtggtgcatgcctgtaatcccagctacacaggagtctgaggcaggagaatcacaggaaaccggcaggcagaggttgcagcgagctgagatcgcaccattgcactccagcctgggcgacaagagcaaaactccgtctc
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55756190 304 +  59248254 TTAAGAAGGTAGAAAAAGGTGGGGGGAAgtggctcatgcctgtaatcccagcactttgggaggctaaggcaggtggatcacctgaggtcaggagttcaagaacagcctggccaacacggtatggtgaaaccccgtctctaataaaaatacaaaatttgccggctgtggtggtgtctgcctgtaatcccagctacacaggagtctgaggcaggagaatcacaagaacctggcaggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggtgacaagagcgaaactccatctc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47569985 304 +  50890351 TTAAGAAGGTAGAAAAAGGTAGGGGGAAgtggctcatgcctgtaatcccagcactttgggaggctaaggcaggtggatcacctgaggtcaggagttcaagaacagcgtggccaatacggtatggtgaaaccctgtctctactaaaaatacaaaattagccggctgtggtgatgcctgcctgtaatcccagctacacaggagtctgaggcaggagaattacaagaacctggcaggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggtgacaggagcgaaactccatctc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e calJac3.chr22              45914405 7610 +  49145316 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47861191 526 +  51301725 M
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=8945.000000
s hg38.chr19_GL949751v2_alt    880528 7 +   1002683 aaaaaaa
s panTro4.chr19              59879380 7 +  63644993 aaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56800350 7 +  60714840 aaaaaag
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55756494 7 +  59248254 aaaaaaa
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47570289 7 +  50890351 aaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45922015 7 +  49145316 aaaaaaa
i calJac3.chr22             I 7610 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47861191 526 +  51301725 M
e rheMac3.chr19              60614643 1276 +  64156825 I

a score=61855.000000
s hg38.chr19_GL949751v2_alt    880535 53 +   1002683 -------------aaaaaaa----gaaaaaatgaaaaagaATTTATTGAAATGTGCAGTCTGAAAACTGC
s panTro4.chr19              59879387 57 +  63644993 -------------aaaaaaaaaatgaaaaaatgaaaaAGAATTTATTGAAATGTGCAGTCTGAAAACTGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56800357 52 +  60714840 -------------aaaaaa-----gaaaaaaagaaaaagaaTTTATTGAAATGTGCAGTCTGAAAACTGC
i ponAbe2.chr19             C 0 M 882
s rheMac3.chr19              60615919 51 +  64156825 -------------AAAAAAA----AAAAAAAAGAAAAATAATTCACTGAAATGTG--GTCTGAAAACTGC
i rheMac3.chr19             I 1276 C 0
s macFas5.chr19              55756501 44 +  59248254 ------------------------aaaaaaaagaaaaataaTTCACTGAAATGTG--GTCTGAAAACTGC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47570296 44 +  50890351 ------------------------aaaaaaaagaaaaataaTTCACTGAAATGTG--GTCTGAAAACTGC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45922022 66 +  49145316 agaagaagaaggagaagaag----aaaaagaacgaaaagaaTTTATTGAAATGTGCAGCCTAAAAACTGC
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47861191 526 +  51301725 M

a score=7255.000000
s hg38.chr19_GL949751v2_alt    880588 7 +   1002683 TCCT-GCA
s panTro4.chr19              59879444 7 +  63644993 TCCT-GCA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60615970 8 +  64156825 TCCTGGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55756545 8 +  59248254 TCCTGGCA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47570340 8 +  50890351 TCCTGGCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45922088 8 +  49145316 TCCTGGCA
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47861191 526 +  51301725 M

a score=44024.000000
s hg38.chr19_GL949751v2_alt    880595 54 +   1002683 CATTTTCATTCATCCTTCCTATTCCCTCCATCCCTCA---Atttttttttttttttt
s panTro4.chr19              59879451 57 +  63644993 CATTTTCATTCATCCTTCCTATTCCCTCCATCCCTCAtttttttttttttttttttt
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60615978 54 +  64156825 CATTTTCATTCATCCTTCCTATTCCCTCCATCCCTCA---Ctttttttttttttttt
i rheMac3.chr19             C 0 I 8
s macFas5.chr19              55756553 54 +  59248254 CATTTtcattcatccttcctattccctccatccctca---ctttttttttttttttt
i macFas5.chr19             C 0 I 5
s chlSab2.chr6               47570348 53 +  50890351 CATTTTCATTCATCCTTCCTATTCCCTCCATCCCTTC---Cttttttttttttttt-
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45922096  0 +  49145316 C
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47861191 526 +  51301725 M

a score=3135.000000
s hg38.chr19_GL949751v2_alt    880649 10 +   1002683 gagacagagt
s panTro4.chr19              59879508 10 +  63644993 tagacagagt
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55756612 10 +  59248254 gagacagagt
i macFas5.chr19             I 5 C 0
s chlSab2.chr6               47570401  8 +  50890351 gagac--agt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45922096  0 +  49145316 C
e nomLeu3.chr10             103314436 2680 - 106955855 M
e papAnu2.chr19              47861191 526 +  51301725 M
e rheMac3.chr19              60616032  8 +  64156825 I

a score=41653.000000
s hg38.chr19_GL949751v2_alt    880659 49 +   1002683 ttcgctcttgttgcccaggctggagtgcaatggcacgatctcagctcac
s panTro4.chr19              59879518 49 +  63644993 ttcgctcttgttgcccaggctggagtgcaatggcacgatctcagctcac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317190 49 - 106955855 Ttcgctcttgttgcccaggctggagtataatggcgtgatctcagctcac
i nomLeu3.chr10             M 2680 C 0
s macFas5.chr19              55756622 49 +  59248254 tttgctcttgttgtccaggctggaatgcaatggcgcaatctcagctcac
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47570409 49 +  50890351 tttgctcttgttgtccaggctggaatgcaatggcgcaatctcagctcac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45922096  0 +  49145316 C
e papAnu2.chr19              47861191 526 +  51301725 M
e rheMac3.chr19              60616032  8 +  64156825 I

a score=107846.000000
s hg38.chr19_GL949751v2_alt    880708 229 +   1002683 tgcaacctctgcctcccaggttccagccattttcctgcctcagcctccagaatagctggaattacaggcatctgccactacgcctggctaattttttgtgtatttttagtagagatgggatttcaccatgttggtcaggctgatctcgaact-cctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgaatcaccacgcccggccCC
s panTro4.chr19              59879567 229 +  63644993 tgcaacctctgcctcccaggttccagcgattttcctgcctcagcctccagaatagctggaattacaggtatctgccactacgcctggctaattttttgtgtatttttagtagagatggggtttcaccatgttggtcaggctgatctcgaact-cctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgaaccaccacgcccggccCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317239 214 - 106955855 tgcaacctctgcctcccaggttcaagcgattttcctgcctcagcctccagaatagctggaattacaggcacctgccactacgcctagctaattttttgtgtatttttagtagagatgg-------tcat--------ggctggtctccaact-cccgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggtatgaaccaccacacctggccCC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55756671 230 +  59248254 ggcaacctctgcctcccaggttcaagcaattttcctgcctcagcctccagaatagctggaattacaggcacctgccaccacgtccagctaatgttttgtgtatttttagtacacacggggtttcaccatgttggtcaggctggtctcaaactgcccgacctcaggtgatccacatgcctcggcttcccaatgtgctgggattacaggagtgaaccaccacacctggcccc
i macFas5.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45922096   0 +  49145316 C
e chlSab2.chr6               47570458   0 +  50890351 C
e papAnu2.chr19              47861191 526 +  51301725 M
e rheMac3.chr19              60616032   8 +  64156825 I

a score=273.000000
s hg38.chr19_GL949751v2_alt    880937 1 +   1002683 T
s panTro4.chr19              59879796 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317453 1 - 106955855 T
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45922096 0 +  49145316 C
e chlSab2.chr6               47570458 0 +  50890351 C
e papAnu2.chr19              47861191 526 +  51301725 M
e macFas5.chr19              55756901 0 +  59248254 C
e rheMac3.chr19              60616032 8 +  64156825 I

a score=13278.000000
s hg38.chr19_GL949751v2_alt    880938 40 +   1002683 CATTTTCTTTTCTTtctttctttcttt-tttgtttgtttgt
s panTro4.chr19              59879797 40 +  63644993 CACTTTCTTTTTATtctttctttcttt-tttgtttgtttgt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317454 39 - 106955855 CACTTTCTTTTT-TTCtttctttcttt-cttttttgtttgt
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45922096 40 +  49145316 CATTTTCTTTCC-ttatttatttatttatttatttatttat
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e chlSab2.chr6               47570458  0 +  50890351 C
e papAnu2.chr19              47861191 526 +  51301725 M
e macFas5.chr19              55756901  0 +  59248254 C
e rheMac3.chr19              60616032  8 +  64156825 I

a score=16933.000000
s hg38.chr19_GL949751v2_alt    880978 30 +   1002683 ttttgagacagagtcttgctc-tgtcaccca
s panTro4.chr19              59879837 30 +  63644993 ttttgagacagagtcttgctc-tgtcaccca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317493 30 - 106955855 ttttgagacggagtctcgttc-tgtcgccca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60616040 31 +  64156825 ttttgagacagagttttgctcttgttgtcca
i rheMac3.chr19             I 8 C 0
s calJac3.chr22              45922136 28 +  49145316 ttttgagatggagtctccctc-tgtcaga--
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e chlSab2.chr6               47570458  0 +  50890351 C
e papAnu2.chr19              47861191 526 +  51301725 M
e macFas5.chr19              55756901  0 +  59248254 C

a score=16576.000000
s hg38.chr19_GL949751v2_alt    881008 14 +   1002683 ggctggagtgcagt
s panTro4.chr19              59879867 14 +  63644993 ggctggagtgcagt
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317523 14 - 106955855 ggctggagggcagt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60616071 14 +  64156825 ggctggaatgcaat
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47861717 14 +  51301725 ggctggaatgcaat
i papAnu2.chr19             M 526 C 0
s calJac3.chr22              45922164 14 +  49145316 ggctggagtgcagc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e chlSab2.chr6               47570458  0 +  50890351 C
e macFas5.chr19              55756901  0 +  59248254 C

a score=138265.000000
s hg38.chr19_GL949751v2_alt    881022 87 +   1002683 ggcgcgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggc
s panTro4.chr19              59879881 87 +  63644993 ggcgcgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctaggactacaggc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103317537 87 - 106955855 ggtgacatctcggctcactgcaagctccacctcccgggttcatgccatcctcctgcctcagcctcctgagtagctgggactacaggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60616085 87 +  64156825 ggcgcaatctcagctcacggcaacctctgcctcccaggttcaagcaattttcctgcctcagcctccagaatagctggaattacaggc
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47861731 87 +  51301725 ggcgcaatctcagctcacggcaacctctgcctcccaggttcaagcaattttcctgcctcagcctccagaatagctggaattacaggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47570458 87 +  50890351 ggcgcaatctcagctcacagcaacctctgcctcccaggttcaagcgattttcctgcttcagcctccagaatagctggaattacaggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45922178 87 +  49145316 ggcgagatctcggctcaccacaacctcctcctcctggattcaagcgattctcctgcctcagcctcccaagtagctgggattacaggc
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e macFas5.chr19              55756901  0 +  59248254 C

a score=159098.000000
s hg38.chr19_GL949751v2_alt    881109 157 +   1002683 gcccgccaccacgcccggctaa--ttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctccatct-cctgacctc--gtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgaggcaccacactgggc------------------------------------cCCC
s nomLeu3.chr10             103317624 156 - 106955855 gcccgccaccacgcccggctaa--ttttttgtatttttagtagagacggggtttcaccgtgtcagccaggatggtctcgatct-cctgacctc--gtgatccgcccgcctcggcctcccaaagtgctgggattccaggcgtgagccaccgcgccgggc------------------------------------cCC-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60616172 161 +  64156825 acctgccaccacgcccagctaatgttttgtgtatttttagtacacacggggtttcaccatgttggtcaggctggtctcaaactgccagacctcaggtgatccacctgcctcggcttcccaatgtgctgggattacaggagtgaaccaccacacctggc------------------------------------cCC-
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47861818 161 +  51301725 acctgccaccacgcccagctaatgttttgtgtatttttagtacacacggggtttcaccatgttggtcaagctggtctcaaactgcccgacctcaggtgatccacctgcctaggcttcccaatgtgctgggattacaggcgtgaaccaccacacctggc------------------------------------ccc-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47570545 161 +  50890351 acctgccaccacgcccagtcaatgttttgtgtatttttagtacacacggggtttcaccatgttggtcaggctggtctcaaactgcccgacctcaggtgatccacctgcctcggcttcccaatgtgctgggattacaggcatgaaccaccacacctggc------------------------------------cCC-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45922265 193 +  49145316 acacaccaccatgcccagctaat-ttttttgtatttttagtagagacagggtttcatcatgttggccaggatggtctcaatct-cttgacctt--gtgatccaccctcctcggcctcccaaagcgctgggattacaggcgtaaaccaccgcgcccggccTGGCAGATTTCATTCATCCTTTCTCTTCCCTCCATCCC-
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e macFas5.chr19              55756901   0 +  59248254 C
e panTro4.chr19              59879968   0 +  63644993 C

a score=1161886.000000
s hg38.chr19_GL949751v2_alt    881266 717 +   1002683 TCACTTTCTTATTCTTTCTAGGATAGGCAACTGA-GCGCGGCAGTGAAGAGCTGGGCTTCCGGAAGCTGACAGCTGTTTGTGATCTTCAAgacctcagacaggttttctaaatatgccttgccttcattttctcaaggaaagtgaaaaatgggtaggatcatggcaatcactactgtgtagcaat-gtttagaggacttaataagtaaacacaGggtcaagcatggtggctcacaccggaaatcccagcactttggga-ggccgt---ggtgggaagattgcttaagcccatggggttgagaccagcctgggcaacatagtgagacctccatctctataaaa-aatacaaaaatctagtcaggcgtgatggcg-tatgcctgtagccttcagtaagctatgattgtgccactgcacaccagcctaggcgacagagtgagaccctgtctcaaaaagaa------aaaacgaaaagaaaTATAGATGTACATATACATATGTTGGTTCTAAAACATGAAAAAggctgggcgcggtggttcgtgcctgcaacccaagcactttgggaggccgaggcgggcggatcacgaggtcaagagtttgagaccagcctggccaacatagtgaaaccccatctctactaaaaatac------------------aaaaaAAAggctaggcgcagtggctcatgcctgtaatcctagcactttgggaggccgaggtgagcagattacctgaggttgggag
s nomLeu3.chr10             103317780 733 - 106955855 TCACTTTCTTATTCTTTTTAGGATAGGCAACTGAAGCACAGCAGTGAAGAGATGGGCTTCCGGAAGCTGACAGCTGTTTGTGATCTTCAAGACCTCCGGCAGGTTTTAAAAATATGCCTTGCCTTCATTTTTTCAAGGAAAGTGAAAAAAGGGTAGGATCATGTCAATCGCTACTGTTTGGCAACAGTTTGGAGGAAGTAATAAGTAAATACAGggtcaagcatggtggctctcagtggaaaccccagcactttgggagggccgt---ggtgggaaggatgcttaagcccaaggggtagagaccagaatgggcaacatagtgagagccccgtctctataaaa-aacacaaaaatatagtcaggcgtgatggcg-tatgcctgtagcagtcagtgagctatgattatgccactgcacaccagcctaggcgacagagtgagaccctgtctcaaaaagaa------aaaacgaaaagaaaTATACATGTACATATACATATATTGGTTCTAAAACATGAAAAAggccgggcgtggtagctcatgcctgcaacccaagcacttcgggagtccgaggcggacggatcacgaggtctgaagtttgagaccaccctggccaacatagtgaaactccgtctctactaaaaatac-----aaaaaAAAAAAAAAAAAAAAAggctaggcgcagtggctcacgcctgtaatcctagcactttgggaggccgaggtgagcggattacctgaggttgggag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60616333 732 +  64156825 TCACTTCCTTATTCTTCCTAGGATTGGCAACTGA-GCGCAGCAGTGAAGAGCTGGGCTTCCAGAAGCTGACAGCTGTTCGTGATCTTCAAGATCTCAGGCAGGTTTTCTAAATATACCTTGCCTTCATTTTCTCAAAGAATGTGAAAAATGGGTAAGGTCATGGCAATCACTACTGTGTAGCAAA-GTTTAGAGGACCTAATAAGTAAACACAGggtcaagcatggtggttcacgctggaaatcccagcacttcggga-ggccgt---ggtaggaagattgcttaagcccatggggttgagaccagcctgggcaacatagtgagacccccgtctctacaaaa-aatacaaaaatctagtaagacatgatgccg-tatgcctgtagccttcagtgagctatgattgtgccactgcacaccagcctaggtgac--agtgagaccctatctcaaaaagaaaaaaacaaaaaGGAAAGAAATATAGATGTACATATACATATATTGGTTCTAAAACATGGAAAAggccgggcacggtggctcctgcctgcaatccaaacacttcgggaggccgaggcgggcagatcactaggtcaggagtttgagaccagcctggccaacatagtgaaacctcgtctctactaaaaatac-------aaaaaaATAAAAATAAAAAggctaggcacagtggctcatgcctgtaatcctagcactttgggaggccgaggtgggtagattacctgaggttgggag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55756901 732 +  59248254 tcacttccttattcttcCTAGGATAGGCAACTGA-GCGCAGCAGTGAAGAGCTGGGCTTCCAGAAGCTGACAGCTGTTCGTGATCTTCAAGATCTCAGGCAGGTTTTCTAAATATACCTTGCCTTCATTTTCTCAAAGAATGTGAAAAATGGGTAAGGTCATGGCAATCACTACTGTGTAGCAAA-GTTTAGAGGACCTAATAAGTAAACACAGggtcaagcatggtggttcacgctggaaatcccagcacttcggga-ggccgt---ggtaggaagattgcttaagcccatggggttgagaccagcctgggcaacatagtgagacccccgtctctacaaaa-aatacaaaaatctagtaagacatgatgccg-tatgcctgtagccttcagtgagctatgattgtgccactgcacaccagcctaggtgac--agtgagaccctatctcaaaaagaaaaaaacaaaaaGGAAAGAAATATAGATGTACATATACATATATTGGTTCTAAAACATGGAAAAggccgggcgcggtggctcctgcctgcaatccaaacacttcgggaggccgaggcgggcagatcactaggtcaggagtttgagaccagcctggccaacatagtgaaacctcgtctctactaaaaatac-------aaaaaAATAAAAATAAAAAggctaggcacagtagctcatgcctgtaatcctagcactttgggaggccgaggtgggtagattacctgaggttgggag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47861979 735 +  51301725 tcacTTCCTTATTCTTCCTAGGATTGGCAACTGA-GCGCAGCAGTGAAGAGCTGGGCTTCCAGAAGCTGACAGCTGTTCGTGATCTTCAAGACCTCAGgcaggttttctaaatataccttGCCTTCATTTTCTCAAAGAATGTGAAAAATGGGTAAGGTCATGGCAATCACTACTGTGTAGCAAA-GTTTAGAGGACCTAATAAGTAAATACAgggtcaagcatggtggctcacactggaaatcccagcacttcggaa-ggccat---ggtaggaagattgcttaagcccatggggttgagaccagcctgggcaacatagtgagacccccgtctctacaaaa-aatacaaaaatctagtaAGACATGATGCCA-TATGCCTGTAgccttcagtgagctatgattgtgccactgcacaccagcctaggtgac--agtgagaccctatctcaaaaagaaaa----aaaaaggaaagaaatatagatgtacatatacatataccagTTCTAAAACATggaaaaggctgggcgcggtggcttctGCCTGCAATCcaaacacttcgggaggctgaggcgggcagatcacgaggtcaggagtttgagaccagcctggccaacatagtgaaacctcgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaggctaggcgcagtggctcatgcctgtaatcctagcactttgggaggccgaggtgggcagattacctgaggttgggag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47570706 731 +  50890351 TCACTTTCTTATTCTTCCTAGGATTGGCAACTGA-GCGCAGTAGTGAAGAGCTGGGCTTCCAGAAGCTGACAGCTGTTCGTGATCTTCAAGATCTCAGGCAGGTTTTCTAAATATAGCTTGCCTTCATTTTCTCAAAGAATGTGAAAAATGGGTAGGGTCATGGCAATCACTACTGTGTAGCGAA-GTTTAGAGGACCTAATAAGTAAATACAGggtcaagcatggtggttcacgctggaaatcccagcacttcggga-ggccgt---ggtaggaagattgcttaagcccatggggttgagaccagcctgggcaacatagtgagacccccgtctctacaaaa-aatacaaaaatctagtaagacatgatgccg-tatgcctgtagccttcagtgagctatgattgtgccactgcacaccagcctaggtgac--agtgagaccctatctcaaaaagaaaaaaacaaaaaGGAAAGAAATATAGATGTACATATACATATATTGGTTCTAAAACATGAAAAAggccgggcgcggtggctcctgcctgcaatccaaacacttcgggaggctgaggcgggcggatcacgaggtcaggagtttgagaccagcccggccaacatagtgaaacctcgtctctacaaaaaatac--------aaaaaatAAAAATAAAAAggctaggcacagtggctcatgcctgtaatcctagcactttgggaagccgaggtgggcagattacctgaggttgggag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45922458 714 +  49145316 TCACTTTCTGACTCTTTCTAGAAT-----------------------AGAGCTGGGCTTCC-GAAGCTCACAGCTGTTTGTGATCTTCAAGACCTCAGACAGGTTTTCTAAATATTTCTTCCCTTCATTTTCTCAAGGAACGTGAAAAGTGGGTAGGATCCTGGCAATCCCTGCTGTGGAGGAAA-GCTTAGAGGACCCAGTAAGTCAATAGAGggtcaagcatggtggctcatggctgaaatcccagcactctggga-ggccatggcggcgggaagatcgcttaagcccatgaggttgagaccagcctgggcaacatcgtgagatcaccatctctacaaaacaatatccaaatctagtcaggcatgagggcattatgcctgtagcctgcagtgagctatgattgtgccactgcactccagccagggcgacagagtgagaccctgactcaaaaagaa-acaacaaaaagaAAAGAAATACAGATGTAGACAGACATATGTTGGTTCTAAAGCATGAAAAAggctgggcacggtggctcacgcctgtaatcccagcactctgggagtccaatgccggcacatcaagaggtcaggagtttgagaccagcttggccaacatagtgaaaccctatctctactaaaaatac--------aaaaaaaaacaaaaaactagccgggtgtgctggcgggcgtctgtagtcccagctacttgggaggtggaggcaggaaaatcacttgaacccaggag
i calJac3.chr22             C 0 I 1621
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e panTro4.chr19              59879968   0 +  63644993 C

a score=97417.000000
s hg38.chr19_GL949751v2_alt    881983 83 +   1002683 ttcaagaccaccctgtcc-aacatggtgaaaccccatctctactaaaaata-agaaaattagccgggtacagtggcacgcgcctg
s nomLeu3.chr10             103318513 84 - 106955855 ttcaagaccagcctggcc-aacacggtgaaaccccatctctactaaaaatacaaaaaattagccgggtacagtggcacgcacctg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60617065 84 +  64156825 ttcaagaccaacctggccaaacatggtcaaaccccatctctactaaaaata-caaaaattagccgggtgcagtggcacacgcctg
i rheMac3.chr19             C 0 M 676
s macFas5.chr19              55757633 84 +  59248254 ttcaagaccaacctggccaaacatggtcaaaccccatctctactaaaaata-caaaaattagccgggtgcagtggcacacgcctg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47862714 84 +  51301725 ttcaaaaccaacctggccaaacatggtcaaaccccatctctactaaaaata-caaaaattagccgggtgccgtcacacgcgcctg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47571437 84 +  50890351 ttccagaccaacctggccaaacatggtcaaaccccatctctactaaaaata-caaaaattagcccggtgcagtggcacgtgcctg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e panTro4.chr19              59879968  0 +  63644993 C

a score=120684.000000
s hg38.chr19_GL949751v2_alt    882066 184 +   1002683 taatcccagctattcaggaggctgaggcaggagaatcgcttgaactctggaggcggaggttgcagtgagccaagattgcgccactgcactccagcccgggcgacagtgccagactcagtctcagaaaaaaaaaaagc----------------------------------------------------------------------------------------aaaacaaaca-------aagaaACATGAAAAAAAGCTATAAAACCCAACttttt
s nomLeu3.chr10             103318597 176 - 106955855 taatcccagctcttcaggaggctgaggcaggagaatcgcttgaactctggaggcagaggttgcagtgaactgagatcgcgccactgcactacagcccgggcgacagtgcaagaatcagtctc---aaaaaaaaaagc----------------------------------------------------------------------------------------aaaacaaac------------aacatgaaaaaaaGCTATAAAACCCAACTTTTT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55757717 269 +  59248254 taatcccagctactcaggaggctgaggcaggagaatcgcttgaactctagaggaggaggttgcagtgagccgagatggtgccactgcactccagcccaggcgacagtg--agactctgtctccaaaaaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCaaaacaaaa--------aaaaaacatgaaaaaaagcaataaaaCTCAACTTTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47862798 189 +  51301725 taatcccagctactcaggaggctgaggcaggagaatcgcttaaactctggaggaggaggttgcagtgagccgagatggtgccactgcactccagccccggcgacagtg--agactcagtctcaaaaaaaaaaaaaaa----------------------------------------------------------------------------------------aaaaaaaaaagcaaaacaaaaaaaatgaaaaaaagctataaaactcAACTTTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47571521 178 +  50890351 taatcccagctactcaggaggctgaggcaggagaatcgcttgaactctgaaggaggaggttgcagtgagctgagatggtgccactgcactccagcccgggcgacagtg--agactctgtctccaaaaaaacaaagc-----------------------------------------------------------------------------------------aaaacaa----------aaaaaaCATGAAAAAAAGCTATAAAATTCAACTTTTT
i chlSab2.chr6              C 0 I 9
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e rheMac3.chr19              60617149 676 +  64156825 M
e panTro4.chr19              59879968   0 +  63644993 C

a score=2670.000000
s hg38.chr19_GL949751v2_alt    882250 9 +   1002683 tcttttttt
s nomLeu3.chr10             103318773 9 - 106955855 AGTCTTATT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55757986 9 +  59248254 AGTCTTATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47862987 9 +  51301725 AGTCTTATT
i papAnu2.chr19             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e chlSab2.chr6               47571699 9 +  50890351 I
e rheMac3.chr19              60617149 676 +  64156825 M
e panTro4.chr19              59879968 0 +  63644993 C

a score=91.000000
s hg38.chr19_GL949751v2_alt    882259 1 +   1002683 t
s papAnu2.chr19              47862996 1 +  51301725 T
i papAnu2.chr19             C 0 I 300
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e nomLeu3.chr10             103318782 0 - 106955855 C
e chlSab2.chr6               47571699 9 +  50890351 I
e macFas5.chr19              55757995 0 +  59248254 C
e rheMac3.chr19              60617149 676 +  64156825 M
e panTro4.chr19              59879968 0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    882260 466 +   1002683 tttgagacggagtctcactctgtcgcccagggtggagtgcagtggtgcggtctcggctcactgcaacctccgcctcctgggttcaagcaattctctgcttcagcctcccaagtagctgggattacaggcacccgccaccacgcccgactaattttttgtatttttagttgagacggggtttcatcatcttggccaggctggtcttgaagtcctgacctcgtgatccacccgccttggcctcccaaagtgctggaattacaggcgtgagccaccgcgcccggccAAAACCCAACTTTTTAGTCTTATTTATATGGTGtttttttttttttttttttttttgagatggagccttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggt
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e nomLeu3.chr10             103318782   0 - 106955855 C
e chlSab2.chr6               47571699   9 +  50890351 I
e papAnu2.chr19              47862997 300 +  51301725 I
e macFas5.chr19              55757995   0 +  59248254 C
e rheMac3.chr19              60617149 676 +  64156825 M
e panTro4.chr19              59879968   0 +  63644993 C

a score=13576.000000
s hg38.chr19_GL949751v2_alt    882726 153 +   1002683 gcccgccaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggc
s panTro4.chr19              59879968 153 +  63644993 gcccaccaccatgccaggcaaattttttgtatttttagtagagacggggtttcaccgtgttagccaggattgtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggc
i panTro4.chr19             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e nomLeu3.chr10             103318782   0 - 106955855 C
e chlSab2.chr6               47571699   9 +  50890351 I
e papAnu2.chr19              47862997 300 +  51301725 I
e macFas5.chr19              55757995   0 +  59248254 C
e rheMac3.chr19              60617149 676 +  64156825 M

a score=24200.000000
s hg38.chr19_GL949751v2_alt    882879 26 +   1002683 TATATGTTTACAAAATTAATACTGCC
s panTro4.chr19              59880121 26 +  63644993 TATATGTTTACAAAATTAATACTGCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103318782 26 - 106955855 TATATGTTTACAAAATTAATACTGCC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55757995 26 +  59248254 TATATGTTTACAAAATTAATACTGCC
i macFas5.chr19             C 0 I 278
s chlSab2.chr6               47571708 26 +  50890351 TATATGTTTACAAAATTAATACTGCC
i chlSab2.chr6              I 9 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e papAnu2.chr19              47862997 300 +  51301725 I
e rheMac3.chr19              60617149 676 +  64156825 M

a score=2865.000000
s hg38.chr19_GL949751v2_alt    882905 2 +   1002683 Ag
s panTro4.chr19              59880147 2 +  63644993 Ag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103318808 2 - 106955855 Ag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55758299 2 +  59248254 ag
i macFas5.chr19             I 278 C 0
s papAnu2.chr19              47863297 2 +  51301725 ag
i papAnu2.chr19             I 300 C 0
s chlSab2.chr6               47571734 2 +  50890351 Ag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e calJac3.chr22              45923172 1621 +  49145316 I
e rheMac3.chr19              60617149 676 +  64156825 M

a score=45357.000000
s hg38.chr19_GL949751v2_alt    882907 33 +   1002683 ccaggcacggtggctcacgcctgtaatcccagc
s panTro4.chr19              59880149 33 +  63644993 ccaggcacggtggctcacgcctgtaatcccagc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103318810 33 - 106955855 ccaggcacggtggctcacgcctgtaatcccagc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55758301 32 +  59248254 ccgggtgtggtggggg-cgcctgtggtcccagc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863299 32 +  51301725 ccgggcctggtggggc-cgcctgtagtcccagc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47571736 33 +  50890351 ccaggcacggtgggtcacacctgtaatcccagc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45924793 33 +  49145316 ctgggcatggtggctcaagcctgtaatcccagc
i calJac3.chr22             I 1621 C 0
e canFam3.chr1              102637494  0 + 122678785 I
e ponAbe2.chr19              56800409 882 +  60714840 M
e rheMac3.chr19              60617149 676 +  64156825 M

a score=118763.000000
s hg38.chr19_GL949751v2_alt    882940  83 +   1002683 actttaggaggctgaggctggcagatcacctgaggtcaggagtttgagac-------------------------------cagcctggccagcatggcaaaaccccgtct-----cta
s panTro4.chr19              59880182  83 +  63644993 actttaggagggtgaggctggcagatcacctgaggtcaggagtttgagac-------------------------------cagcctggccagcatggcaaaaccccgtct-----cta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801291  83 +  60714840 actttaggaggctgaggctggcagatcacctgaggtcaggagtttgagac-------------------------------cagcctggccagcatggcaaaaccccgtct-----cta
i ponAbe2.chr19             M 882 C 0
s nomLeu3.chr10             103318843  83 - 106955855 actttaggaggctgaggctggcggatcacctgaggtcaggagtttgagac-------------------------------cagcctggccagcatggcaaaaccccgtct-----cta
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55758333 119 +  59248254 tactcgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgagccgagatcgcgccattgcactccagcctgggtgacagagcgagactccgtttaaaaaaaa
i macFas5.chr19             C 0 I 3
s papAnu2.chr19              47863331 114 +  51301725 tactggggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgagccgagatcgcgccattgcactccagcctgggtgacagagcgagactctgttt-----aaa
i papAnu2.chr19             C 0 I 3
s chlSab2.chr6               47571769  83 +  50890351 actttaagaggctgagactggtggatcacctgaggtcaggagtttgagat-------------------------------cagcctgggcagcatggcaaaactccgtct-----cta
i chlSab2.chr6              C 0 I 306
s calJac3.chr22              45924826  81 +  49145316 actttgggaggccgaagtaggtggatca--tgaggtcaggagtttgagac-------------------------------cagcctgaccaagatggtgaaaccctgtct-----cta
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e rheMac3.chr19              60617149 676 +  64156825 M

a score=-2136.000000
s hg38.chr19_GL949751v2_alt    883023 4 +   1002683 tt----ga
s panTro4.chr19              59880265 4 +  63644993 ct----ga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801374 4 +  60714840 ct----ga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103318926 8 - 106955855 ctaaaaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55758455 4 +  59248254 ----aaaa
i macFas5.chr19             I 3 C 0
s papAnu2.chr19              47863448 4 +  51301725 ----aaaa
i papAnu2.chr19             I 3 C 0
s calJac3.chr22              45924907 4 +  49145316 ct----ga
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e chlSab2.chr6               47571852 306 +  50890351 I
e rheMac3.chr19              60617149 676 +  64156825 M

a score=227109.000000
s hg38.chr19_GL949751v2_alt    883027 107 +   1002683 aaaaaatacaaaaattaaccaggcgttgtggcgcatgcttgtaatctcagctactc--gggaggctgaggcaggggaatcacttgaagccggcaggcggaggctgcggg
s panTro4.chr19              59880269 107 +  63644993 aaaaaatacaaaaattagccaggcgttgtggcgcatgcttgtaatctcagctactc--gggaggctgaggcaggggaatcgcttgaagccggcaggcggaggctgcggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801378 107 +  60714840 aaaaaatacaaaaattagccaggcgttgtggcgcatgcttgtaatctcagctactc--gggaggctgaggcaggggaatcgcttgaacccggcaggcggaggctgcggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103318934 107 - 106955855 aaaaaatgcaaaaatcagccaggcgttgtggcgcatgcttgtaatcccaaatactc--aggaggctgaggcaggagaatcgcttgaacccggcaggcggaggctgcggg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55758459 107 +  59248254 aaaaaattgaaaaattagccaggcgttgcggcgcatgcctgtaatcccagctactc--gggtggctgaggcaggagaatcgctcgaacccaggaggcggaggctgcaag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863452 107 +  51301725 aaaaaattcaaaaattagccaggcgttgcggcgcatgcctgcaatcccaggtactc--gggtggctgaggcaggagaatcgctcgaacccgggaggcggaggctgcaag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572158 107 +  50890351 aaaaaattcaaaaattagccaggtgttgcggcgcatgcctgtaatcccagctactc--gggtggctgaggcaggagaatcgctcgaacccgggaggcggaggctgcaag
i chlSab2.chr6              I 306 C 0
s calJac3.chr22              45924911 106 +  49145316 ---aaatacaaaaattagcgaggtgtggtggcaggcgcctgtaatcccagatactcaggggaggctcaggcaggagaatcatttgaacccaagaggcggagattgcagt
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494   0 + 122678785 I
e rheMac3.chr19              60617149 676 +  64156825 M

a score=159877.000000
s hg38.chr19_GL949751v2_alt    883134 62 +   1002683 gagccgagatcgtgccgttgcactccagcctggggaac-agagcaagactcca--ttaaaaataa
s panTro4.chr19              59880376 62 +  63644993 gagccgagatcgtgccgttgcactccagcctggggaac-agagcaagactcca--ttaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801485 62 +  60714840 gagccaagatcgtgccattgcactccagcctggggaac-agagcaagactcca--ctaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319041 62 - 106955855 gagccgagatcctgccattgcattccagcctgggcaac-agagcaagactcca--ctaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60617825 62 +  64156825 gagccgagatcatgccattgcactccagcctgggcaac-taaacaagactcca--ttaaaaataa
i rheMac3.chr19             M 676 C 0
s macFas5.chr19              55758566 62 +  59248254 gagccgagatcatgccattgcactccagcctgggcaac-taaacaagactcca--ttaaaaataa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863559 62 +  51301725 gagccgagatcacgccattgcactccaacctgggcaac-taaacaagactcca--ttaaaaataa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572265 62 +  50890351 cagccgagatcacgccattgcactccagcctggacaac-taaacaagactcca--ttaaaaataa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925017 65 +  49145316 gagctgaaattgtgccattgcagtccagcttgggcaacaagagtgaaactctgtctcaaaaatta
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494  0 + 122678785 I

a score=-5763.000000
s hg38.chr19_GL949751v2_alt    883196 3 +   1002683 aa----t
s panTro4.chr19              59880438 2 +  63644993 aa-----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801547 7 +  60714840 aaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319103 7 - 106955855 aaaaaaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47863621 1 +  51301725 ------t
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572327 1 +  50890351 ------t
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925082 6 +  49145316 -attatt
i calJac3.chr22             C 0 C 0
e canFam3.chr1              102637494 0 + 122678785 I
e macFas5.chr19              55758628 0 +  59248254 C
e rheMac3.chr19              60617887 0 +  64156825 C

a score=-4658.000000
s hg38.chr19_GL949751v2_alt    883199 5 +   1002683 --aataa
s panTro4.chr19              59880440 3 +  63644993 --aaT--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801554 3 +  60714840 --aaT--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319110 5 - 106955855 --aaaaa
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47863622 2 +  51301725 --aa---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572328 2 +  50890351 --aa---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925088 2 +  49145316 --aa---
i calJac3.chr22             C 0 I 13
s canFam3.chr1               20035636 5 - 122678785 aaaat--
i canFam3.chr1              I 23589 C 0
e macFas5.chr19              55758628 0 +  59248254 C
e rheMac3.chr19              60617887 0 +  64156825 C

a score=979316.000000
s hg38.chr19_GL949751v2_alt    883204 313 +   1002683 taaTACTGTGAATGTGAAACTGATGAACTTGGTGCTTTTCATGCGTCTCATA-GTTGACGTGTCATTGATATTTCACTTGAAATACGGTTGGATTTTTATTAATAATATACCTGGGGTGATGGGAGAAGGTAGCCAATCACAGCTGAGGCTTCTAAGcggtgattctcagcctcggccgcaatcacaattatctgggactctcgaaagaactccagggtctgggcagtcccagtgtaaccaatcaagcagaatctctaggcgttcgtgctttgaaatgaggctccacataggtaagtttaacaggcagtcaaga
s panTro4.chr19              59880443 313 +  63644993 TAATACTGTGAATGTGAAACTGATGAACTTGGTGCTTTTCATGCGTCTCATA-GTTGACGTGTCATTGATATTTCACTTGAAATACGGTTGGATTTTTATTAATAATATACCTGGGGTGATGGGAGAAGGTAGCCAATCACAGCTGAGGCTTCTAAGcggtgattctcagcctcggccgcaatcacaattatctgggactctcgaaagaactccagggtctgggcagccccagtgtaaccaatcaagcagaatctctgggcgttcgtgctttgaaatgaggctccacataggtaagtttaacaggcagtcaaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56801557 313 +  60714840 TAGTACTGTGAATGTGAAACTGATGAACTTGGTGCTTTTCATGTGTCTCATA-GTTGACGTGTCATTGATATTTCACTTGAAATACGGTTGGATTTTTATTAATAATATATCTGGGGTGATGGGAGAAGGTAGCCAATCACAGCTGAGGCTTCTAAGcggtgattctcagcctcagcggcaatcacaattatctggggctctcgaaagaactccagggtctgggcagcgccagtctgaccaatcaagcagaatctctgggcgtTCGTGCTTTGAAATGAGGCTCCAGATAGGTAAGTTTAACAGGCAGCCAAGA
i ponAbe2.chr19             C 0 I 1096
s nomLeu3.chr10             103319115 313 - 106955855 aaaTACTGTGAGTGTAAAACTGATGAACTTGGTGCTTTTCATGTGTCTCATA-GTTGACGTGTCATTGATACTTCACTTGAAGTACGGTTGGATTTTTATTAATAATATACCTGGGGTGATGGGAGAAGGTAACCAATCACAGCTGAGGTTTCTAAGcggtgattttcagcctcggcggcaatcacaattatctgggactctctaaagaactccagggtctgggccgccccagtctgaccaatcaagcagaatctctgggcgtttgtgctttgaaatgaggctccagataggtaagtttaacaggcagctaaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60617887 304 +  64156825 taaTACTGTGAGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTA-GTTGACGTGTCATTGATAGTTCACTTGAAATGCGGTTGGATTTTTAT---TAATATACTTGGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGCGGTGATcctca------gcggcaatcacaattatctgggactctttaaagaactccagggtctgggcagccgcagtttaactcatcaaccagcatctctgggcgttcgtgctttgaaatgaggccccagatgggtaagtttaacaggcagcctaga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55758628 304 +  59248254 taaTACTGTGAGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTA-GTTGACGTGTCATTGATAGTTCACTTGAAATGCGGTTGGATTTTTAT---TAATATACTTGGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGCGGTGATcctca------gcggcaatcacaattatctgggactctttaaagaactccagggtctgggcagccgcagtttaactcatcaaccagcatctctgggcgttcgtgctttgaaacgaggccccagatgggtaagtttaacaggcagcctaga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863624 307 +  51301725 taatactgtgaGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTA-GTTGACGTGTCATTGATATTTCACTTGAAATGCGGTtggatttttattaataatatacttGGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGCGGTGATTCTCA------GCGGCAATCACAATTATCTGGGACTCTTTAAAGAACTCCAGGGTCTGGGCAGCTGCAGTTTAACTCATCAACCAGCATCTCTGGGCGTTCGTGCTTTGAAATGAGGCCCCAGATGGGTAAGTTTAACAGGCAGCCTAGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572330 307 +  50890351 taaTACTGTGAGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTA-GTTGACATGTCATTGATATTTCACTTGAAATGCGGTTGGATTGTTATTAATAATATACTTAGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGcagtgattctca------gcggcaatcacaattatctgtgactctttaaagaactccagggtctgggcagccgcagtttaactcatcaaccggcatctctgggcgttcgtgctttgaaatgaggccccagatgggtgagtttaacaggcagcctaga
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925103 306 +  49145316 taatACCGCCAGTGTAAAACTGATGAATTTGGTGCTTTTCATGTGTCCCATA-GTTGACGTGTCATTGATACTTAACTGGAAATGCAGTTGGATTTTTATTAAGAATATGCCTCGTGTGGT-GGAGAAGGGAGCCAGTCGCAGCTGAGGCTTCTAAGcggtgattctcagacca-tcagcaatcgtaattatctgggactc----aagaactccagtatctgagcggcccgaatctgaccaatcaaccagaatctctgggtgtttgtactttaaaatgaggccccagataggtaagttt-acaggcagccaagg
i calJac3.chr22             I 13 C 0
s canFam3.chr1               20035641 303 - 122678785 taatattgtcagtataaaactggtgaacttg--gctattgatgtatcttttgtatttacatgtcacttacatttaacatgaaatgttggtggacttttag---------atctggtatgaCAGAAGGGGGTGGCTATTCACAGCTGAACTTCCTGAGcagtgattctcaagattggctgcaattaaaatcatctggagatctttaaaaaacttcagtgactgggcagcccccatctgattaacaaatcagaatatctgggaaccgacactttcaaatgatgccccagggaggtgggttctacatgtggacaagg
i canFam3.chr1              C 0 C 0

a score=99099.000000
s hg38.chr19_GL949751v2_alt    883517 57 +   1002683 tggaggaccacAGGT---GGAGATCGGGAAGCTCA-GGTGAAGGACCG-CCCCCCAACACCC
s panTro4.chr19              59880756 57 +  63644993 tggaggaccacAGGT---GGAGATCGGGAAGCTCA-GGTGAAGAACCG-CCCCCCAACACCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56802966 57 +  60714840 ttgagaaccacAGGT---GGAGATGGGGAAGCTCA-GGTGAGGAATCG-CCGCCCACCACCC
i ponAbe2.chr19             I 1096 C 0
s nomLeu3.chr10             103319428 58 - 106955855 ctgagaaccacAGGT---GGAGATCGGGAAGGTCA-GGTGAGGAATCGCCCCCCCACCACTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60618191 47 +  64156825 ttgagaaccacAGGT---GCAGAACCGGAAGCTCA-GGTCAGGCATTG----------A-CC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55758932 47 +  59248254 ttgagaaccacAGGT---GCAGAACCGGAAGCTCA-GGTCAGGCATTG----------A-CC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863931 48 +  51301725 TTGGGAACCACAGGT---GCAGATCCGGAAGCTCA-GGTCAGGCATTG----------Accc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572637 47 +  50890351 ttgggaaccacAGGT---GCAGATCCGGAAGCTCA-GGTCAGGCATTG----------A-CC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925409 50 +  49145316 ttgagaaccacAGGT---GTAGATGGGGAAGCTCA-GGTGAGGAGTCA--------GCACCC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20035944 51 - 122678785 ttaagaacctctgGTCTAGGAGAAGGTGAGGCTCACACTAAGGAAATG----------GTC-
i canFam3.chr1              C 0 C 0

a score=14825.000000
s hg38.chr19_GL949751v2_alt    883574 14 +   1002683 CCCGCCCCCAAAAG
s panTro4.chr19              59880813 14 +  63644993 CCCGCCCCCAAAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803023 14 +  60714840 CCCGCCCCCAAATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319486 14 - 106955855 CCCGTCCCCAAACG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60618238 11 +  64156825 CCCGCCCCC---CG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55758979 11 +  59248254 CCCGCCCCC---CG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863979 11 +  51301725 cccgccccc---cG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572684 11 +  50890351 CCCGCCCCC---CG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20035995  3 - 122678785 ----TCC-------
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45925459  0 +  49145316 C

a score=635579.000000
s hg38.chr19_GL949751v2_alt    883588 227 +   1002683 ACCTCTCAGTAATTCCGGTGGATACAGGAAGTGCTCAGCAACGATTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGAGAAAGAAGCC---TTAATAGA-GCTTTCTCAACCTGCAGCCCTCATCTCCGCCGGCGAGTAGGGCCAGGTGTTGG-GAGGTGAGTAGCTCTCCGGCAGCTCTGCAACTTCATTTCTTTATTTCTCCATTCCACAGT---------------T--------GGTAAAATttctcct---
s panTro4.chr19              59880827 227 +  63644993 ACCTCTCAGTAATTCCGGTGGATACAGGAAGTGCTCAGCAACGATTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGAAAGAGAAGCC---TTATTAGA-GCTTTCTCAACCTGCAGCCCTCATCGCCGCCGGAGAGTAGGGCCAGTTGTTGA-GAGGTGAGTAGCTCTCCGGCAACTCTGCAACTTCATTTCTTTATTTCTCCATTCCACAGT---------------T--------GGTAAAATttctcct---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803037 227 +  60714840 ACCTCTCAGTAGTTCCGGTGGATACAGGAAGTGCTCAGCAAGGATTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGAAAGAGAAGCC---TTATTAGA-GCTTTCTCCACCTACAGCCCCCATCGCCGCCGGAGAGTAGGGCCAGGTGTTGG-GTGGTGAGTAGCTCTCCGGCAAGTCTGCAACTGCATTTGTTTATTTCTCCATTCCATAGT---------------T--------GGTAAAATTTCTCCt---
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319500 227 - 106955855 ACCCCCCAGTAATTCCGGTGGATACAGGAAGTGCTCAGCAGCGATTACGCCCCGTGGGCCAATCACAGGGC-TGCGGCCGAACGAGAAGCC---TTATTAGA-GCTTTCTCAACCTACAGCCCTCACCGCCGCCGGAGAGTAGGGCCAGGTGCTGG-GAGGTGAGTGGCTCTCCGGCAACTCTGCAACTTCCTTTCTTTATTTCTCCATTCCACAGT---------------T--------GGTAAAAtttctcct---
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60618249 228 +  64156825 ACCTTTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGGTTTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGA--GAGGAGCCTTTTTATTAGC-GCTTTCTCAGCCTCCATCCCTCAGTGCCGCCGGGGAGTGGTGCCAGGTGTTAC-GAGGTGAGTATCTCTCCGGCAACTCTGCAACTTCATTTCTTTCTTTCTCCATTCCACAGT---------------T--------GGTAAAATGTCTCCT---
i rheMac3.chr19             C 0 T 590
s macFas5.chr19              55758990 228 +  59248254 ACCTTTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGGTTTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGA--GAGGAGCCTTTTTATTAGC-GCTTTCTCAGCCTCCATCCCTCAGTGCCGCCGGGGAGTGGTGCCAGGTGTTAC-GAGGTGAGTATCTCTCCGGCAACTCTGCAACTTCATTTCTTTCTTTCTCCATTCCACAGT---------------T--------CGTAAAATGTCTCCt---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863990 226 +  51301725 ACCTCTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGGATTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGA--GAGAAGCCTTTTTATTAGA-ACTTTCTCGGCCTACATCCCTCAGTGCCGCCGGGGAGTGGTGCCAGGTGTTAG-GAGGTGAGTAGCTCTCCGGCAGCTCTGcaacttcatttctttatttctcccttccaCAGT---------------t--------ggtaaaatttcct-----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572695 228 +  50890351 ACCTTTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGAATTACGCCCCGAGGGCCAATCACAGGGC-TGCGGCCGA--GAGAAGCCTTTTTATTAGA-ACTTTCTCGGCCTACGTCGCTCAGTGCCGCCGGGGAGTGGGGCCAGGTGTTAG-GAGGTGAGTAGCTCTCCGGCAGCTCTGCAATTTCATTTCTTTATTTCTGCATTCCACAGT---------------T--------GGTAAAAtttctcct---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925459 239 +  49145316 GCCTCCCAGGATTCCTGGTGGGTACAGGAAGTGCCCAGCAATGGTCAGGCCCTGAGGACCAATCACAGG---TGGGGCAGAAAGAGAAACCTTTTTATTAGC-GCCTTCTCAGCCTCCGGCACTCAG---AGCCGGGGAGTAGGGCCAGGCCTTGG-GAGGTGAGTAGCTGCTGGGCAACCCTGCGGCTTCATTTCTGTGTTTCTCCATTCCACAGTTAGTTGTTGTCTCTAT--------GGTAAAAttcctcc----
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20035998 233 - 122678785 ACCTATCAGTAACCATGCTGGATGCAGGAAGTTCTTTGCAATGG----GTCCCAAGGGCCAATCACAGAGCTTGAGGCAGAACAAGAGACTCCTTTATCGGAGGCTTTTTACACCTGCAGCACTCA---CAACCAGAGAGGAGC-CCTGGTGCTGGAGAGGTAAGTAACATCCCTGCTTCTTT---ACTTCATTTCTCCATTTCCTTATTCAACTGT---------------TAAATCCGCAATAAAAATCTTCCTCCC
i canFam3.chr1              C 0 C 0

a score=1530.000000
s hg38.chr19_GL949751v2_alt    883815 16 +   1002683 tttatttcatata-ttt
s panTro4.chr19              59881054 16 +  63644993 tttatttcatata-ttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803264 17 +  60714840 tttatttcatatatttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319727  6 - 106955855 ttt-----------ttt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759218 12 +  59248254 ----ctttttttt-ttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864216  5 +  51301725 -----------tt-ttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572923 14 +  50890351 --ttttttttttt-ttt
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20036231 15 - 122678785 -TTTCTTTGAATA-TTT
i canFam3.chr1              C 0 I 5018
e calJac3.chr22              45925698  0 +  49145316 C
e rheMac3.chr19              60618477 590 +  64156825 T

a score=307678.000000
s hg38.chr19_GL949751v2_alt    883831 156 +   1002683 ttttt---ctgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctctgctcactgcaagctc---cgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaa
s panTro4.chr19              59881070 156 +  63644993 ttttt---ttgagacgaagtctcgctctgtcgcccaggctggagtgcggtggcccgatctcggctcactgcaagctc---cgcctcccgggttcccgccattctcccgcctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccggctaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803281 156 +  60714840 ttttt---ttgggacgaagtctcgctctgtcgcccaggctggagtgaggtggcgcgatctcggctcactgcaagctc---cgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccagctaa
i ponAbe2.chr19             C 0 I 1
s nomLeu3.chr10             103319733 156 - 106955855 ttttt---ttgagacggaatctcgctctgtcgcccaggctggggtgcattggcgccatcttggctcactgtgagctc---cgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccaggcctggctaa
i nomLeu3.chr10             C 0 I 13
s macFas5.chr19              55759230 157 +  59248254 ttttt-aattgagacagagtcttgctgtgtcgcccaggctggggtgtagtggggagatctcggctcactgcaaactc---cgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggcg-ccgccaccacgcccggctaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864221 155 +  51301725 ttttt---ttgagacggagtctcactctgtcgcccaggctggagtgcagtggcctgatctcagctcac-gcaagctc---cacctcctgggtttacgccattctcctgcctcagcctcccgagtacctgggactacaggcgcccgccacttcgcccggctaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572937 158 +  50890351 tttttaaattgagacagagtctcgctgtgtcgcccaggctggagtgcagtggggagatttcagctcactgcaagctc---cgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggcg-ccgccaccacgcccggctaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925698 150 +  49145316 ttttt---ttgagac--agtctcactttgtcacccgggctagagtgcagtggtgcaatcaca------ttcaagcttgaacacctcccaggttcaagggagtttcatgcctcagcctcctgagtagct-ggactataggcatgagccaccacacatggccaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 590 +  64156825 T

a score=2202.000000
s hg38.chr19_GL949751v2_alt    883987 4 +   1002683 --tttt
s ponAbe2.chr19              56803438 4 +  60714840 --tttt
i ponAbe2.chr19             I 1 C 0
s nomLeu3.chr10             103319902 4 - 106955855 --tttt
i nomLeu3.chr10             I 13 C 0
s macFas5.chr19              55759387 4 +  59248254 --tttt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864376 4 +  51301725 --gttt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47573095 4 +  50890351 --tttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925848 4 +  49145316 CATT--
i calJac3.chr22             C 0 T 938
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=5993.000000
s hg38.chr19_GL949751v2_alt    883991 5 +   1002683 ttgta
s ponAbe2.chr19              56803442 5 +  60714840 ttgta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319906 5 - 106955855 ttgta
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759391 5 +  59248254 ttgca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864380 5 +  51301725 ttgta
i papAnu2.chr19             C 0 T 1070
s chlSab2.chr6               47573099 5 +  50890351 ttgca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45925852 938 +  49145316 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=910.000000
s hg38.chr19_GL949751v2_alt    883996 1 +   1002683 t
s ponAbe2.chr19              56803447 1 +  60714840 t
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319911 1 - 106955855 t
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759396 1 +  59248254 t
i macFas5.chr19             C 0 T 1080
s chlSab2.chr6               47573104 1 +  50890351 t
i chlSab2.chr6              C 0 T 947
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45925852 938 +  49145316 T
e papAnu2.chr19              47864385 1070 +  51301725 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=2211.000000
s hg38.chr19_GL949751v2_alt    883997 8 +   1002683 ttttagta
s ponAbe2.chr19              56803448 8 +  60714840 ttttagta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319912 8 - 106955855 ttttagta
i nomLeu3.chr10             C 0 T 980
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45925852 938 +  49145316 T
e chlSab2.chr6               47573105 947 +  50890351 T
e papAnu2.chr19              47864385 1070 +  51301725 T
e macFas5.chr19              55759397 1080 +  59248254 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=100.000000
s hg38.chr19_GL949751v2_alt    884005 1 +   1002683 g
s ponAbe2.chr19              56803456 1 +  60714840 g
i ponAbe2.chr19             C 0 T 893
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45925852 938 +  49145316 T
e nomLeu3.chr10             103319920 980 - 106955855 T
e chlSab2.chr6               47573105 947 +  50890351 T
e papAnu2.chr19              47864385 1070 +  51301725 T
e macFas5.chr19              55759397 1080 +  59248254 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    884006 8 +   1002683 gtggctca
e canFam3.chr1               20036246 5018 - 122678785 I
e ponAbe2.chr19              56803457 893 +  60714840 T
e calJac3.chr22              45925852 938 +  49145316 T
e nomLeu3.chr10             103319920 980 - 106955855 T
e chlSab2.chr6               47573105 947 +  50890351 T
e papAnu2.chr19              47864385 1070 +  51301725 T
e macFas5.chr19              55759397 1080 +  59248254 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=15805.000000
s hg38.chr19_GL949751v2_alt    884014 103 +   1002683 cgcctgtaatcccagcactttaggaggctgaggctggcagatcacctgaggtcgggagtttgaga-------------------------------ccagcctggccagcatggcaaaaccccgtct--------ctattga
s macFas5.chr19              55758317 142 +  59248254 cgcctgtggtcccagctactcgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgagccgagatcgcgccattgcactccagcctgggtgacagagcgagactccgtttaaaaaaaaaaaaaaa
i macFas5.chr19             T 1080 C 0
s papAnu2.chr19              47863315 137 +  51301725 cgcctgtagtcccagctactggggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgagccgagatcgcgccattgcactccagcctgggtgacagagcgagactctgttt-----aaaaaaaaaa
i papAnu2.chr19             T 1070 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e ponAbe2.chr19              56803457 893 +  60714840 T
e calJac3.chr22              45925852 938 +  49145316 T
e nomLeu3.chr10             103319920 980 - 106955855 T
e chlSab2.chr6               47573105 947 +  50890351 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226   0 +  63644993 C

a score=3276.000000
s hg38.chr19_GL949751v2_alt    884117 6 +   1002683 aaaaaa
s macFas5.chr19              55758459 6 +  59248254 aaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863452 6 +  51301725 aaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572158 6 +  50890351 aaaaaa
i chlSab2.chr6              T 947 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e ponAbe2.chr19              56803457 893 +  60714840 T
e calJac3.chr22              45925852 938 +  49145316 T
e nomLeu3.chr10             103319920 980 - 106955855 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226 0 +  63644993 C

a score=91751.000000
s hg38.chr19_GL949751v2_alt    884123 84 +   1002683 tacaaaaattaaccaggcgttgtggcgcatgcttgtaatctcagctactc--gggaggctgaggcaggggaatcacttgaagccgg
s nomLeu3.chr10             103318940 84 - 106955855 tgcaaaaatcagccaggcgttgtggcgcatgcttgtaatcccaaatactc--aggaggctgaggcaggagaatcgcttgaacccgg
i nomLeu3.chr10             T 980 C 0
s macFas5.chr19              55758465 84 +  59248254 ttgaaaaattagccaggcgttgcggcgcatgcctgtaatcccagctactc--gggtggctgaggcaggagaatcgctcgaacccag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863458 84 +  51301725 ttcaaaaattagccaggcgttgcggcgcatgcctgcaatcccaggtactc--gggtggctgaggcaggagaatcgctcgaacccgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572164 84 +  50890351 ttcaaaaattagccaggtgttgcggcgcatgcctgtaatcccagctactc--gggtggctgaggcaggagaatcgctcgaacccgg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45924914 86 +  49145316 tacaaaaattagcgaggtgtggtggcaggcgcctgtaatcccagatactcaggggaggctcaggcaggagaatcatttgaacccaa
i calJac3.chr22             T 938 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e ponAbe2.chr19              56803457 893 +  60714840 T
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226  0 +  63644993 C

a score=106635.000000
s hg38.chr19_GL949751v2_alt    884207 87 +   1002683 caggcggaggctgcggggagccgagatcgtgccgttgcactccagcctggggaac-agagcaagactcca--ttaaaaataaaataataa
s ponAbe2.chr19              56802564 87 +  60714840 Caggcggaggctgcggggagccaagatcgtgccattgcactccagcctgcgtaac-agagcaagactcca--ctaaaaaaaaaaaaaaaa
i ponAbe2.chr19             T 893 I 2
s nomLeu3.chr10             103319024 87 - 106955855 caggcggaggctgcggggagccgagatcctgccattgcattccagcctgggcaac-agagcaagactcca--ctaaaaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 I 4
s macFas5.chr19              55758549 79 +  59248254 gaggcggaggctgcaaggagccgagatcatgccattgcactccagcctgggcaac-taaacaagactcca--ttaaaaataa--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863542 82 +  51301725 gaggcggaggctgcaaggagccgagatcacgccattgcactccaacctgggcaac-taaacaagactcca--ttaaaaataataa-----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572248 82 +  50890351 gaggcggaggctgcaagcagccgagatcacgccattgcactccagcctggacaac-taaacaagactcca--ttaaaaataataa-----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925000 90 +  49145316 gaggcggagattgcagtgagctgaaattgtgccattgcagtccagcttgggcaacaagagtgaaactctgtctcaaaaattaattattaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 590 +  64156825 T
e panTro4.chr19              59881226  0 +  63644993 C

a score=431795.000000
s hg38.chr19_GL949751v2_alt    884294 200 +   1002683 -------------taaTACTGTGAATGTGAAACTGATGAACTTGGTGCTTTTCATGCGTCTCATAGTTGACGTGTCATTGATATTTCACTTGAAATACGGTTGGATTTTTATTAATAATATACCTGGGGTGATGGGAGAAGGTAGCCAATCACAGCTGAGGCTTCTAAGcggtgattctcagcctcggccgcaatcacagttatctgggactc
s ponAbe2.chr19              56802653 200 +  60714840 -------------TAGTATTGTGAATGTGAAACTGATGAACTTGGTGCTTTTCATGTGTCTCATAGTTGACGTGTCATTGATATTTCACTTGAAATACGGTTGGATTTTTATTAATAATATATCTGGGGTGATGGGAGAAGGTAGCCAATCACAGCTGAGGCTTCTAAGcggtgattctcagcctcagcggcaatcacaattatctggggctc
i ponAbe2.chr19             I 2 C 0
s nomLeu3.chr10             103319115 200 - 106955855 -------------aaaTACTGTGAGTGTAAAACTGATGAACTTGGTGCTTTTCATGTGTCTCATAGTTGACGTGTCATTGATACTTCACTTGAAGTACGGTTGGATTTTTATTAATAATATACCTGGGGTGATGGGAGAAGGTAACCAATCACAGCTGAGGTTTCTAAGcggtgattttcagcctcggcggcaatcacaattatctgggactc
i nomLeu3.chr10             I 4 C 0
s rheMac3.chr19              60617887 191 +  64156825 -------------taaTACTGTGAGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTAGTTGACGTGTCATTGATAGTTCACTTGAAATGCGGTTGGATTTTTAT---TAATATACTTGGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGCGGTGATcctca------gcggcaatcacaattatctgggactc
i rheMac3.chr19             T 590 C 0
s macFas5.chr19              55758628 191 +  59248254 -------------taaTACTGTGAGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTAGTTGACGTGTCATTGATAGTTCACTTGAAATGCGGTTGGATTTTTAT---TAATATACTTGGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGCGGTGATcctca------gcggcaatcacaattatctgggactc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863624 194 +  51301725 -------------taatactgtgaGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTAGTTGACGTGTCATTGATATTTCACTTGAAATGCGGTtggatttttattaataatatacttGGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGCGGTGATTCTCA------GCGGCAATCACAATTATCTGGGACTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572330 194 +  50890351 -------------taaTACTGTGAGTGTAAAACCGATGAACTTGGTGCTTTTCATGTGTCTCGTAGTTGACATGTCATTGATATTTCACTTGAAATGCGGTTGGATTGTTATTAATAATATACTTAGGGTGGTGGGAGAAGGTAGCCAGTCACAGCTGAGGCTTCTAAGcagtgattctca------gcggcaatcacaattatctgtgactc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925090 211 +  49145316 ttaattaattaattaatACCGCCAGTGTAAAACTGATGAATTTGGTGCTTTTCATGTGTCCCATAGTTGACGTGTCATTGATACTTAACTGGAAATGCAGTTGGATTTTTATTAAGAATATGCCTCGTGTGGT-GGAGAAGGGAGCCAGTCGCAGCTGAGGCTTCTAAGcggtgattctcagacca-tcagcaatcgtaattatctgggactc
i calJac3.chr22             C 0 I 158
e canFam3.chr1               20036246 5018 - 122678785 I
e panTro4.chr19              59881226   0 +  63644993 C

a score=250576.000000
s hg38.chr19_GL949751v2_alt    884494 166 +   1002683 tcgaaagaactccagggtctgggcagtcccagtgtaaccaatcaagcagaatctctaggcgttcgtgctttgaaatgaggctccacataggtaagtttaacaggcagtcaagatggaggaccacAGGTGGAGATCCGGAAGCTCAGGTGAAGGACCGCCCCCCAAC
s ponAbe2.chr19              56802853 166 +  60714840 tcgaaagaactccagggtctgggcagcgccagtctgaccaatcaagcagaatctctgggcgttcgtgctttgaaatgaggctccagataggtaagtttaacaggcagccaagattgagaaccacAGGTGGAGATGGGGAAGCTCAGGTGAGGAATCGCCGCCCACC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319315 166 - 106955855 tctaaagaactccagggtctgggccgccccagtctgaccaatcaagcagaatctctgggcgtttgtgctttgaaatgaggctccagataggtaagtttaacaggcagctaagactgagaaccacAGGTGGAGATCGGGAAGGTCAGGTGAGGAATCGCCCCCCCAC
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              60618078 158 +  64156825 tttaaagaactccagggtctgggcagccgcagtttaactcatcaaccagcatctctgggcgttcgtgctttgaaatgaggccccagatgggtaagtttaacaggcagcctagattgagaaccacAGGTGCAGAACCGGAAGCTCAGGTCAGGCATTGA--------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55758819 158 +  59248254 tttaaagaactccagggtctgggcagccgcagtttaactcatcaaccagcatctctgggcgttcgtgctttgaaacgaggccccagatgggtaagtttaacaggcagcctagattgagaaccacAGGTGCAGAACCGGAAGCTCAGGTCAGGCATTGA--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863818 158 +  51301725 TTTAAAGAACTCCAGGGTCTGGGCAGCTGCAGTTTAACTCATCAACCAGCATCTCTGGGCGTTCGTGCTTTGAAATGAGGCCCCAGATGGGTAAGTTTAACAGGCAGCCTAGATTGGGAACCACAGGTGCAGATCCGGAAGCTCAGGTCAGGCATTGA--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572524 158 +  50890351 tttaaagaactccagggtctgggcagccgcagtttaactcatcaaccggcatctctgggcgttcgtgctttgaaatgaggccccagatgggtgagtttaacaggcagcctagattgggaaccacAGGTGCAGATCCGGAAGCTCAGGTCAGGCATTGA--------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45925301 158 +  49145316 I
e panTro4.chr19              59881226   0 +  63644993 C

a score=17672.000000
s hg38.chr19_GL949751v2_alt    884660 18 +   1002683 ACCCCCCGCCCCCAAAAG
s ponAbe2.chr19              56803019 18 +  60714840 ACCCCCCGCCCCCAAATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319482 18 - 106955855 ACTCCCCGTCCCCAAACG
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              60618236 13 +  64156825 --CCCCCGCCCCC---CG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55758977 13 +  59248254 --CCCCCGCCCCC---CG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863976 14 +  51301725 -ccccccgccccc---cG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572682 13 +  50890351 --CCCCCGCCCCC---CG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45925301 158 +  49145316 I
e panTro4.chr19              59881226  0 +  63644993 C

a score=442370.000000
s hg38.chr19_GL949751v2_alt    884678 219 +   1002683 ACCTCTCAGTAATTCCGGTGGATACAGGAAGTGCTCAGCAACGATTACGCCCCGAGGGCCAATCACAGGGCTGCGGCCGAGAGAGAAGCC---TTATTAGAGCTTTCTCAACCTGCAGCCCTCATCTCCGCCGGCGAGTAGGGCCAGGTGTTGGGAGGTGAGTAGCTCTCCGGCAGCTCTGCAACTTCATTTCTTTATTTCTCCATTCCACAGT---------------TGGTAAAA
s ponAbe2.chr19              56803037 219 +  60714840 ACCTCTCAGTAGTTCCGGTGGATACAGGAAGTGCTCAGCAAGGATTACGCCCCGAGGGCCAATCACAGGGCTGCGGCCGAAAGAGAAGCC---TTATTAGAGCTTTCTCCACCTACAGCCCCCATCGCCGCCGGAGAGTAGGGCCAGGTGTTGGGTGGTGAGTAGCTCTCCGGCAAGTCTGCAACTGCATTTGTTTATTTCTCCATTCCATAGT---------------TGGTAAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103319500 219 - 106955855 ACCCCCCAGTAATTCCGGTGGATACAGGAAGTGCTCAGCAGCGATTACGCCCCGTGGGCCAATCACAGGGCTGCGGCCGAACGAGAAGCC---TTATTAGAGCTTTCTCAACCTACAGCCCTCACCGCCGCCGGAGAGTAGGGCCAGGTGCTGGGAGGTGAGTGGCTCTCCGGCAACTCTGCAACTTCCTTTCTTTATTTCTCCATTCCACAGT---------------TGGTAAAA
i nomLeu3.chr10             C 0 I 524
s rheMac3.chr19              60618249 220 +  64156825 ACCTTTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGGTTTACGCCCCGAGGGCCAATCACAGGGCTGCGGCCGA--GAGGAGCCTTTTTATTAGCGCTTTCTCAGCCTCCATCCCTCAGTGCCGCCGGGGAGTGGTGCCAGGTGTTACGAGGTGAGTATCTCTCCGGCAACTCTGCAACTTCATTTCTTTCTTTCTCCATTCCACAGT---------------TGGTAAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55758990 220 +  59248254 ACCTTTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGGTTTACGCCCCGAGGGCCAATCACAGGGCTGCGGCCGA--GAGGAGCCTTTTTATTAGCGCTTTCTCAGCCTCCATCCCTCAGTGCCGCCGGGGAGTGGTGCCAGGTGTTACGAGGTGAGTATCTCTCCGGCAACTCTGCAACTTCATTTCTTTCTTTCTCCATTCCACAGT---------------TCGTAAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47863990 220 +  51301725 ACCTCTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGGATTACGCCCCGAGGGCCAATCACAGGGCTGCGGCCGA--GAGAAGCCTTTTTATTAGAACTTTCTCGGCCTACATCCCTCAGTGCCGCCGGGGAGTGGTGCCAGGTGTTAGGAGGTGAGTAGCTCTCCGGCAGCTCTGcaacttcatttctttatttctcccttccaCAGT---------------tggtaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572695 220 +  50890351 ACCTTTCAGTAATTCCGGCGGATACAGGAAGTGCTCAGCAGGAATTACGCCCCGAGGGCCAATCACAGGGCTGCGGCCGA--GAGAAGCCTTTTTATTAGAACTTTCTCGGCCTACGTCGCTCAGTGCCGCCGGGGAGTGGGGCCAGGTGTTAGGAGGTGAGTAGCTCTCCGGCAGCTCTGCAATTTCATTTCTTTATTTCTGCATTCCACAGT---------------TGGTAAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925459 232 +  49145316 GCCTCCCAGGATTCCTGGTGGGTACAGGAAGTGCCCAGCAATGGTCAGGCCCTGAGGACCAATCACAGG--TGGGGCAGAAAGAGAAACCTTTTTATTAGCGCCTTCTCAGCCTCCGGCACTCAG---AGCCGGGGAGTAGGGCCAGGCCTTGGGAGGTGAGTAGCTGCTGGGCAACCCTGCGGCTTCATTTCTGTGTTTCTCCATTCCACAGTTAGTTGTTGTCTCTATGGTAAAA
i calJac3.chr22             I 158 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e panTro4.chr19              59881226   0 +  63644993 C

a score=6044.000000
s hg38.chr19_GL949751v2_alt    884897 8 +   1002683 Tttctcct
s ponAbe2.chr19              56803256 8 +  60714840 TTTCTCCt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320243 8 - 106955855 tttttttt
i nomLeu3.chr10             I 524 C 0
s rheMac3.chr19              60618469 8 +  64156825 TGTCTCCT
i rheMac3.chr19             C 0 I 1812
s macFas5.chr19              55759210 8 +  59248254 TGTCTCCt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864210 6 +  51301725 tttcct--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572915 8 +  50890351 tttctcct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45925691 7 +  49145316 ttcctcc-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e panTro4.chr19              59881226 0 +  63644993 C

a score=191197.000000
s hg38.chr19_GL949751v2_alt    884905 153 +   1002683 tttatttcatatatttttttt---ct-gagacggagtctcgctctgtcgcccaggctggagtgcggtggcgcgatctcggctcactgcaagctc---cgcctcccgggttcaggccattctcctgcctcagcctcccgagtagctgagactacaggcacc
s ponAbe2.chr19              56803264 154 +  60714840 tttatttcatatatttttttt---tttgggacgaagtctcgctctgtcgcccaggctggagtgaggtggcgcgatctcggctcactgcaagctc---cgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggcgcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320251 150 - 106955855 tttttttc---tttttttttt---tt-gaaacgaagtctggctctgtcgctcaggctggagtgcaatggtgcaatcttggcccactgcaagctc---cgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759218 151 +  59248254 ----ctttttttttttttttt-aatt-gagacagagtcttgctgtgtcgcccaggctggggtgtagtggggagatctcggctcactgcaaactc---cgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggcgcc
i macFas5.chr19             C 0 I 28
s papAnu2.chr19              47864216 141 +  51301725 -----------tttttttttt---tt-gagacggagtctcactctgtcgcccaggctggagtgcagtggcctgatctcagctcac-gcaagctc---cacctcctgggtttacgccattctcctgcctcagcctcccgagtacctgggactacaggcgcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47572923 154 +  50890351 --tttttttttttttttttttaaatt-gagacagagtctcgctgtgtcgcccaggctggagtgcagtggggagatttcagctcactgcaagctc---cgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggactacaggcgcc
i chlSab2.chr6              C 0 I 28
s calJac3.chr22              45925698 131 +  49145316 ----------------ttttt---tt-gagac--agtctcactttgtcacccgggctagagtgcagtggtgcaatcaca------ttcaagcttgaacacctcccaggttcaagggagtttcatgcctcagcctcctgagtagctg-gactataggcatg
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 1812 +  64156825 I
e panTro4.chr19              59881226   0 +  63644993 C

a score=4140.000000
s hg38.chr19_GL949751v2_alt    885058 20 +   1002683 tgccactatgcccagctaat------------------------------
s ponAbe2.chr19              56803418 20 +  60714840 cgccaccacgcccagctaat------------------------------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320401 20 - 106955855 catcaccacgctcggctaat------------------------------
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47864357 19 +  51301725 cgccacttcgcccggctaa-------------------------------
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45925829 50 +  49145316 agccaccacacatggccaaCATTGAATAGCTTTTCTTTCtttcttttctt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e chlSab2.chr6               47573077 28 +  50890351 I
e macFas5.chr19              55759369 28 +  59248254 I
e rheMac3.chr19              60618477 1812 +  64156825 I
e panTro4.chr19              59881226  0 +  63644993 C

a score=5570.000000
s hg38.chr19_GL949751v2_alt    885078 9 +   1002683 -ttttttgta
s panTro4.chr19              59881226 9 +  63644993 -ttttttgta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803438 9 +  60714840 -ttttttgta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320421 8 - 106955855 --tttttgta
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47864376 9 +  51301725 -gtttttgta
i papAnu2.chr19             C 0 I 1
s calJac3.chr22              45925879 9 +  49145316 ttttttttt-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e chlSab2.chr6               47573077 28 +  50890351 I
e macFas5.chr19              55759369 28 +  59248254 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=204850.000000
s hg38.chr19_GL949751v2_alt    885087 120 +   1002683 tttttagtagagacggggtttcac-catgttggccaggctgg-------------------------------tctcagt----------------------ccgcctcggcctcccaaggtgccgggattacaggcgtgagccaccgcgcccagccttttttttttttttttt
s panTro4.chr19              59881235 129 +  63644993 tttttattagagacggggtttcac-catgttggccaggctgg-------------------------------tctcagtctcctgacctc--gtgatccgcccgcctcggcctcccaaggtgccgggattacaggcgtgagccaccgcgcccagcc-----------tttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803447 129 +  60714840 tttttagtagagacagggtttcac-catgttggccaggctgg-------------------------------tctcagtcttctgacctt--gtgatccgcccgcctcggcctcccaaggtgccgggattacaggcgtgagccaccgcgcccagcc-----------tttttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320429 115 - 106955855 tttttagtaaagacggggtttcac-catgttggccaggatgg-------------------------------tctcagtctcctgacctt--gtgatccgcccgcctcggcctctcaaagtgtcgggattacagg-----------------GGCC--------ttttttttt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759397 139 +  59248254 tttttggtagagactgggtttcac-cgtgttagccaggatag-------------------------------tctcgatctcctgacctt--gtgagccacccgcctcgacctcccaaagtgctgggatttcaggcgtgagccaccgcgcccggtc-ttcttttttttttttt
i macFas5.chr19             I 28 C 0
s papAnu2.chr19              47864386 139 +  51301725 tttttagtagagacggggtttcac-cgtgtcagccaggatgg-------------------------------tctcgatctcctgacctc--gtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcc-tttttttttttttttt
i papAnu2.chr19             I 1 I 12
s chlSab2.chr6               47573105 139 +  50890351 tttttagtagagactgggtttcac-cgcgttagccaggatgg-------------------------------tctcgatctcctgacctt--gtgagccgcccgcctcgacctcccaaagtgctgggatttcaggcgtgagccaccgcgcccggtc-CTttttttttttcttt
i chlSab2.chr6              I 28 I 1
s calJac3.chr22              45925888 170 +  49145316 tttttttttgagtcggagttttgctcttgttacccaggctggagtgcaatggcgcgatctcggctcaccgcaacctccgcctcctgggttcaggcaattctcctgcctcagcctcctgagtagctgggactacaggcacgcgccaccatgcccagct-aatttttgtattt---
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=5618.000000
s hg38.chr19_GL949751v2_alt    885207 9 +   1002683 ttttttttt
s panTro4.chr19              59881364 9 +  63644993 ttttttttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803576 8 +  60714840 tttttttt-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320544 9 - 106955855 ttttttttt
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               47573245 9 +  50890351 tttcttttt
i chlSab2.chr6              I 1 I 240
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926058 0 +  49145316 C
e papAnu2.chr19              47864525 12 +  51301725 I
e macFas5.chr19              55759536 0 +  59248254 C
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=134.000000
s hg38.chr19_GL949751v2_alt    885216 4 +   1002683 cttc
s panTro4.chr19              59881373 4 +  63644993 cccc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103320553 4 - 106955855 tttt
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e ponAbe2.chr19              56803584 0 +  60714840 C
e calJac3.chr22              45926058 0 +  49145316 C
e chlSab2.chr6               47573254 240 +  50890351 I
e papAnu2.chr19              47864525 12 +  51301725 I
e macFas5.chr19              55759536 0 +  59248254 C
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=10590.000000
s hg38.chr19_GL949751v2_alt    885220 9 +   1002683 tcttttttg
s panTro4.chr19              59881377 9 +  63644993 tcttttttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803584 9 +  60714840 tcttttttg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320557 9 - 106955855 ccttttttg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759536 7 +  59248254 --ttttttg
i macFas5.chr19             C 0 I 4
s chlSab2.chr6               47573494 9 +  50890351 tcttttttg
i chlSab2.chr6              I 240 C 0
s calJac3.chr22              45926058 7 +  49145316 --ttagtag
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e papAnu2.chr19              47864525 12 +  51301725 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=210405.000000
s hg38.chr19_GL949751v2_alt    885229 144 +   1002683 ----agggtcttactctgtttcccaggctggagcgctgtggcaggatctcggctcactgaacccttgacctctcaggttcaagcagtcctcacgcctcagcctttgaagtagctgggaccgtgggagggtgccaccacatctgttctg
s panTro4.chr19              59881386 144 +  63644993 ----agggtcttactctgtttcccaggctggagcgctgtggcaggatctcggctcactgaacccttgacctctcaggctcaagcaatcctcacacctcagcctctgaagtagctgggaccgtgggagggtgccaccacatctgttctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803593 144 +  60714840 ----agggtcttactctgtttcccaggctggagcgcagtggcaggatctcggctcactgaagccttgacctctcaggctcaagcaatcctcacacttcagcctctgaagtagctgggaccgtgggagggtgccaccacatctgttctg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320566 144 - 106955855 ----agggtcttactctgtttctcaggctggagcgctgtggcaggatctccgctcactgaagccttgacctctcaggctcaagcaatcctcacacctcagcctctgaagtagctgggaccgtgggagggtgccaccacatctgttctg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759547 139 +  59248254 ----ggagtctcgctctgtcacccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggtttacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcc-----cg
i macFas5.chr19             I 4 C 0
s papAnu2.chr19              47864537 138 +  51301725 ----agagtctcgctgtgtcgcccaggctggggtgcagtggggagatctcagctcactgcaaactccgcctcccgggttcccgccattctcctgccccagcctcccgagtagctgggactacaggcg-ccgccaccacgcc-----cg
i papAnu2.chr19             I 12 C 0
s chlSab2.chr6               47573503 144 +  50890351 ----agggtcttactctgtttcccaggctggagcattgtggcaggatctcagctcaccggagccttgacctcttgggcgcaagcaatcctcgcacctgagcctctgaagtagctgggaccgtgggagggtgccaccacatctctcatg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45926065 115 +  49145316 agacggggtttcaccttgttgaccaggatgg-------------------------------tctcgatctcttgacctcatg--atccacccgccttggcctcccaaagtgctgggattataggcgtgagccaccgcgcccggccTG
i calJac3.chr22             C 0 I 482
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=33797.000000
s hg38.chr19_GL949751v2_alt    885373 46 +   1002683 gctaataatattat--tattaccactgtttgcagagactcactagatg
s panTro4.chr19              59881530 46 +  63644993 gctaataatattat--tattaccactgtttgtagagactcactagatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803737 46 +  60714840 gctaataataatat--tattaccactgtttgtagagactcactagatg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320710 46 - 106955855 gctaataataatat--tattaccactgtttgtagagactcactagatg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759686 29 +  59248254 gctagt-------t--ttttgtattttttagtagagac----------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864675 29 +  51301725 gctaat-------t--ttttgcattttttggtagagac----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47573647 41 +  50890351 gctaaa-------taatattatcactctttgtagggactcactagatg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926180 482 +  49145316 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=211798.000000
s hg38.chr19_GL949751v2_alt    885419 130 +   1002683 tagggtcttaatatgttgccgaagctggtctctaactcctgggctcaagcgatcttcctgcctcagactcccaaaat-tctgggattataggcaggtgccaccgcgcccggccTAAATCTTTTCTTCTGTT
s panTro4.chr19              59881576 125 +  63644993 tagggtcttagtatgttgccgaagctggtctctaactcctgggctcaagcgatcttcctgcctcagactcccaaagt-tctgggattacaggcaggtgccaccgcgcccggccTAAA-----TCTTCTGTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803783 130 +  60714840 tagggtcttagtatgttgccgaagctggtctctaactcctgggctcaagcgatcttcatgcctcagactcccaaagt-tctgggattacaggcaggagccaccgcgcctggccTAAATCTTTTCTTCTGTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320756 130 - 106955855 tagggtcttagtatgttgcggaagctggtctctaactcctgggctcaagcgatcttcctgcctcagactcccaaact-cctgggattacaggcaggagccactgcgcccggccTAAATCTTTTCTTCTGTT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759715 127 +  59248254 -ggggtttcaccgtgttaaccaggatggtctggatctcccgacctc--gtgatccgcccgtctcggcctcccaaagt-gctgggattacaggcttgagccaccgcgcccggcctttttttttttttttctt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47864704 127 +  51301725 -ggggtttcaccgtgttagccaggatggtctccatctcctgacctt--gtgagcctcccgcctcgacctcccaaagt-gctgggatttcaggcgtgagccaccgcgcccggtctttttttttttttttttt
i papAnu2.chr19             C 0 I 1181
s chlSab2.chr6               47573688 131 +  50890351 tagggtgttagtatgttgcccaagctggtctctaactcccgggctccagagatcttactgcctcagactcccaaaatggctagaattacaggcaagagccaccgttcccggccTAAATCTTGTCTTCTGTT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45926662 130 +  49145316 tggggtttctccatgttggtcaggctggtctcgaactcctgacctcagatgatccgcctgcctcagcctcccaaagt-gctggaattacagggaggagccgcctcgcccagGCTAAACCTTTTCATCTGTT
i calJac3.chr22             I 482 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=3279.000000
s hg38.chr19_GL949751v2_alt    885549 2 +   1002683 AG
s panTro4.chr19              59881701 2 +  63644993 AG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803913 2 +  60714840 AG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320886 2 - 106955855 AG
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55759842 2 +  59248254 gg
i macFas5.chr19             C 0 I 1169
s chlSab2.chr6               47573819 2 +  50890351 AG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45926792 2 +  49145316 AG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e papAnu2.chr19              47864831 1181 +  51301725 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=48227.000000
s hg38.chr19_GL949751v2_alt    885551 54 +   1002683 AAATTAAGTGGTTCTGCCTGTCTcagtgg--ctcacgcctgtaatcgcagcgcttt
s panTro4.chr19              59881703 56 +  63644993 AAATTCAGTGGTTCTGCCTGTCTCAGTGGCTctcacgcctgtaatcgcagcgcttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803915 53 +  60714840 AAACTCAGTGG-TCTGCCTGTCTcagtga--ctcacgcctgtaatcgcagcgcttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320888 54 - 106955855 AAATACAGTGGTTCTGCCTGTCTCCgtgg--ctcacgcctgtaatcgcagcgcttt
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               47573821 54 +  50890351 AAGTTCAGTGGTTCTgccggtctcggtgg--ctcacacctgtaataccagcgctgt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45926794 50 +  49145316 AAATTCAGTGGTTTGGGCAA----GGTGG--CTCATGTCTGTCATCCTAGCACCtt
i calJac3.chr22             C 0 I 3424
e canFam3.chr1               20036246 5018 - 122678785 I
e papAnu2.chr19              47864831 1181 +  51301725 I
e macFas5.chr19              55759844 1169 +  59248254 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=96956.000000
s hg38.chr19_GL949751v2_alt    885605 130 +   1002683 gggaggccgaggcgggaggatcacctgaggtcgggagttcgagaccagcctgaccaacatgtagaaaccccatctctactaaaaatataaaattaggtgggcgtggtagcgcatacttgtaatcctagct
s panTro4.chr19              59881759 130 +  63644993 gggaggccgaggcgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatgtagaaaccccatctctactaaaaatatacaattaggtgggcgtgggagcgcatgcttgtaatcccagct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56803968 130 +  60714840 gggaggccgaggcgggcggatcacctgaggtcgggagttcgagaccagcctgatcaacatgtagaaaccccatctctcctaaaaatgtaaaattaggtgggcgtggtagcgcatgcctgtaatcccagct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103320942 130 - 106955855 gggaggccgaggtgggcggatcactggaggtcgggagttcgagaccagcctgaccaacttgtagaaaccccatctctactaaaaatataaaattaggtgggcgtggtggctcatgcctgtaatcccagct
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               47573875 113 +  50890351 gggagggcaaggcgggcagatcacctgaggtga-----------------tgaccaacatgtagaaaccccgtctccactaaaagtataaaatgaggtgggcatggtggagcatgcctgtaatcccagct
i chlSab2.chr6              C 0 I 464
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I
e papAnu2.chr19              47864831 1181 +  51301725 I
e macFas5.chr19              55759844 1169 +  59248254 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=3559.000000
s hg38.chr19_GL949751v2_alt    885735 7 +   1002683 actcagg
s panTro4.chr19              59881889 7 +  63644993 actcggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804098 7 +  60714840 actcggg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321072 7 - 106955855 actcagg
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I
e chlSab2.chr6               47573988 464 +  50890351 I
e papAnu2.chr19              47864831 1181 +  51301725 I
e macFas5.chr19              55759844 1169 +  59248254 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=6111.000000
s hg38.chr19_GL949751v2_alt    885742 3 +   1002683 agg
s panTro4.chr19              59881896 3 +  63644993 agg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804105 3 +  60714840 agg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321079 3 - 106955855 agg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55761013 3 +  59248254 agg
i macFas5.chr19             I 1169 C 0
s papAnu2.chr19              47866012 3 +  51301725 agg
i papAnu2.chr19             I 1181 C 0
s chlSab2.chr6               47574452 3 +  50890351 agg
i chlSab2.chr6              I 464 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I
e rheMac3.chr19              60618477 1812 +  64156825 I

a score=358358.000000
s hg38.chr19_GL949751v2_alt    885745 175 +   1002683 ctgaggcaggagaatcacttgaacccgggaagcggaggttgcggggagcctagatcataccattgctctccagcctgcgcagcaagagagaaactgtctc----aaaaaataaaataaaataaaaTTCAGTGGTTCTGACTGGGGAAAGAGTAGCAGATGCTTAGATCTAGAGAGACTC
s panTro4.chr19              59881899 170 +  63644993 ctgaggcaggagaatcacttgaacccgggaggcggaggttgcggggagcctagatcataccattgctctccagcctgcgcagcaagagagaaactgtctc----aa-----aaaataaaataaaaTTCAGTGGTTCTGATTGGGGAAAGAGTAGCAGATGCTTAGATCTAGAGAGACTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804108 170 +  60714840 ctgaggcaggagaatcacttgaacccgggaggcggaggttgtggggagccgagatcataccattgctctccagcctgcacagcaagagagaaactgtctc----aa-----aaaataaaataaaaTTCAGTGGTTCTGACTTGGGAAAGAGTAGCAGATGCTTAGATCTAGAGAGACTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321082 165 - 106955855 ctgaggcgggagaattgtttgaacctgggaggcggaggtttcggggagccgggatcataccattgctctccagcctgcacagcaagaaagaaaccgtctc----aa----------aaaataaaGTCCAGTAGTTCTGAATTGGGAAAGAGTAGCAGATGCTTAGATCTAGAGAGACTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60620289 168 +  64156825 ctgaggcaggagaatcccttgaacccaggaggcggaggttggggggatccgagttcgtgccactgcactccagcctgggcagcaagagagaaactctctc-----------aaaaaaaaaaaaaaTGCAGTGGTTCTGACTTGGGAAAGAGTAGCAGATGCTTAGATCTAGAGTGTCTC
i rheMac3.chr19             I 1812 C 0
s macFas5.chr19              55761016 174 +  59248254 ctgaggcaggagaatcccttgaacccgggaggcggaggttgcggggatccgaggtcgtgccactgcactccagcctgggcagcaagagagaaactctctcaaaaaa-----aaaaaaaaaaaaaaTGCAGTGGTTCTGACTTGGGAAAGAGTAGCAGATGCTTAGATCTAGAGTGTCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866015 173 +  51301725 ctgaggcaggagaatcccttgaacccgggaggtggaggttgtggggatccgaggtcatgccactgcactccagcctgggcagcaagagagaaactgtcta-acaaa-----aaaaaaaaaaaaaattcagtggttCTGACTTGGGAAGGAGTAGCAGATGCTTAGATCTAGAGTGTCTC
i papAnu2.chr19             C 0 M 256
s chlSab2.chr6               47574455 166 +  50890351 ctgaggcaggagaatcccttgaacccgggaggcggaggttgcggggatccgaggtcgtgccactgcactccagcctgggcagcaagcgagaaactgtctc-------------aaaaaaaaaaaaTTCAGCGGTTCTGACTTGGGAAAGAGTAGCAGATGCTTAGATCTAGAGTGTCTC
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I

a score=229315.000000
s hg38.chr19_GL949751v2_alt    885920 168 +   1002683 TAGTTAAGGTTGGCTCATAAGAGGATAGTTGTGTGTGCTTTTATTTCTGTTCTCTTGGGGGATTTAGGATAGAGCTATAGAGAGCTCC---AAAAAAAAAAATATATTGGAACAGGTCAGATGCTGTGGTTGCTGTGTGTGGAGTCCTGGGCAGTGCTAAGGTTTTGTGTC
s panTro4.chr19              59882069 168 +  63644993 TAGTTAAGGTTGGCTCATAAGAGGATAGTTTTGTGTGCTTTTATTTCTGTTCTCTT---GGATTTAGGATAGAGCTATAGAGAGCTCCAAAAAAAAAAAAAAAATGTTGGAACAGGTCAGATGCTGTGGTTGCTGTGTGAGGAGTCCTGGGCAGTGCTAAGGTTTTCTGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804278 161 +  60714840 T-----ACGTTGGCTCACAAGAGGATAGTTTTGTGTGC-TTTATTTCTGTTCTCTTGGGGGATTTAGGATAGAGCTATAGAGAGCTCC----AAAAAAAAAATATGTTGGAACAGGTCAGATGCTGAGGTTGCTGTGTGTGGAGTCCTGGGCGGTGCTAAGGTTTTGTGTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321247 166 - 106955855 TAGTTTATGTTGGCTCATAAGAGGATAGGTTTGTGTGCTTTTATTTCTGTTCTCTTGGGGGATTTAAGATAGAGCTATAGAGAGCTCC-----AAAAAAAAATACATTGTAACAGGTCAGATGCTGTGATTGCTGTATGTGTAGTCCTGAGCAGTGCCCACGTTTTGCATC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60620457 151 +  64156825 TAGTTTACATTGGTTCATAAGAGGATAAGTTTGTGTGCTTTTATTTCTGTTCTCTTGGGGGATTTAGAATAGAGCT-----------C----AAAAAACAAAAA---TGGAACAGGTCAGATGCTGTGGTTGCTGTGTGTGGAGTCCTGGGCGGTGCTGAGG--TTGTGTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55761190 151 +  59248254 TAGTTTACATTGGTTCATAAGAGGATAAGTTTGTGTGCTTTTATTTCTGTTCTCTTGGGGGATTTAGAATAGAGCT-----------C----AAAAAACAAAAA---TGGAACAGGTCAGATGCTGTGGTTGCTGTGTGTGGAGTCCTGGGCGGTGCTGAGG--TTGTGTC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47574621 153 +  50890351 TAGTTTACATTGGTTCATAAGAGGATAAGTTTGTGTGCTTTTATTTCTGTTCTCTTGGGGGATTTAGAATAGAGCT-----------C--AAAAAAAAAAAAAA---TGGAACAGGTCAGATGCTGTGGTTGCTGTGTGTGGAGTCCTGGGCGGTGCTGAGG--TTGTGTC
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I
e papAnu2.chr19              47866188 256 +  51301725 M

a score=399977.000000
s hg38.chr19_GL949751v2_alt    886088 192 +   1002683 TAATGAGTCCTCTTAACAAGAAGGTATTGTTTTT-TAT--TCACTGAGGTGAGGGAGCCTCTTAG-CATCATTCTAGTCCAGCTTCCGGACCTGAGTCTTATGCAAATACCTATGCCAGTTGCCATTCTCACGCTATTCACAGCTATCATATAAAGAGGTGTTATACCCTTTCTGTAAAGTTTTTGTTGCTACTG--C
s panTro4.chr19              59882237 191 +  63644993 TAATGAGTCCTCTTAA-AAGAAGGTATTGTTTTT-TAT--TCACTGAGGTGAGGGAGACTCTTAC-CATCATTCTAGTCCAGCTTCCGGACCTGAGTCTTATGCAAATACCTATGCCAGTTGCCATTCTCACGCTATTCACAGCTATCATATAGAGAGGTGTTATACCCTTTCTGTAAAGTTTTTGTTGCTACTG--C
i panTro4.chr19             C 0 I 325
s ponAbe2.chr19              56804439 191 +  60714840 TAATGAGTCCTCTTAA-CAGAAGGTATTGTCTTT-TAT--TCACTGGGGCGACAGAGCCTCTTAG-CAGCGTTCTAGTCCAGCTTCCGGACCTGAGTCTTATGCAAATACCTATGCCAGTTGCCATTCTCACGCTATTCACAGCTATCATATAGAGAGGTGTTACACCCTTTCTGTAAAGTTTTTGTTGCTACTG--C
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321413 193 - 106955855 TAATGAGTCCTCTTAA-CAGAAGGTATTGTCTTT-TATAAACATTGAGGTGACGAAGCCTCTTAG-CATTGTTTTAGTCCAGCTTCCAGACCTGAGTCTTATGCAAATACCTATGCCAGTTGCCATTCTCAAGTTATTCACAGCTATCATCTAGAGAGGTGTTATACCCTTTCTGTAAAGTTTTTGTTGCTGCTA--t
i nomLeu3.chr10             C 0 I 1
s rheMac3.chr19              60620608 184 +  64156825 TAATGAGTCCTCTTAA-CAGAAGGTATTGTCTTT-TAT--TCATTGAGGTGGTGGAGCCTCTTAT-CCTCATTCTATTCCAGCTTCTGGACCTGAGTCTTATGCAAATACCTATGCTAGTTGTCATTCTCACGTTATTCA-------CATATAGAGAGGTGTTACACCCTTTCTGTAAAGTTTTTGTTGCTACTG--C
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55761341 184 +  59248254 TAATGAGTCCTCTTAA-CAGAAGGTATTGTCTTT-TAT--TCATTGAGGTGGTGGAGCCTCTTAT-CCTCATTCTATTCCAGCTTCTGGACCTGAGTCTTATGCAAATACCTATGCTAGTTGTCATTCTCACGTTATTCA-------CATATAGAGAGGTGTTACACCCTTTCTGTAAAGTTTTTGTTGCTACTA--C
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866444 192 +  51301725 TAATGAGTCCTCTTAA-CAGAAGGTATTGTCTTTCTAT--TCATTGAGGTGGTGGAGCCTCTTATACCTCATTCTATTCCAGCTTCTGGACCTGAGTCTTATGCAAATACCTATGCTAGTTGTCATTCTCACGTTATTCACAGCTAGCATATAGAGAGGTGTTACACCCTGTCTGTAAAG-TTTTGTTGCTactg--c
i papAnu2.chr19             M 256 C 0
s chlSab2.chr6               47574774 185 +  50890351 TAATGAGTCCTCTTAA-GAGAAGGTATTGTCTTT-TAT--TCATTGAGGTGGTGGAGCCTCTTAT-CCTCATTCTATTCCAGCTTCTGGACCTGAGTCTTATGCAAATACCTATGCTAGTTGTCATTCTCA-GCAGCTAG-------CATATAGAGAAGTGTTACACCCTTTCTGTAAAGTTTTTGTTGCTACTGGTA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I

a score=696.000000
s hg38.chr19_GL949751v2_alt    886280 2 +   1002683 TA
s ponAbe2.chr19              56804630 2 +  60714840 TA
i ponAbe2.chr19             C 0 I 4
s nomLeu3.chr10             103321607 1 - 106955855 t-
i nomLeu3.chr10             I 1 C 0
s rheMac3.chr19              60620792 2 +  64156825 TA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55761525 2 +  59248254 TA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866636 2 +  51301725 ta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47574959 2 +  50890351 TA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I
e panTro4.chr19              59882428 325 +  63644993 I

a score=2680.000000
s hg38.chr19_GL949751v2_alt    886282 1 +   1002683 --t
s panTro4.chr19              59882753 1 +  63644993 --t
i panTro4.chr19             I 325 C 0
s ponAbe2.chr19              56804636 1 +  60714840 --t
i ponAbe2.chr19             I 4 C 0
s nomLeu3.chr10             103321608 1 - 106955855 --t
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60620794 3 +  64156825 TAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55761527 3 +  59248254 TAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866638 3 +  51301725 tat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47574961 3 +  50890351 TAT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45926844 3424 +  49145316 I

a score=173328.000000
s hg38.chr19_GL949751v2_alt    886283 73 +   1002683 tttttttttt------ttttttttgagacaaagtctagctctgtttcccaggctggagtacagtggcgctatctcagct
s panTro4.chr19              59882754 73 +  63644993 tttttttttt------ttttttttgagacaaagtctagctctgtttcccaggctggagtacagtggcgctatctcagct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804637 73 +  60714840 tttttttttt------ttttttttgagacaaagtctagctctgtttcccaggctggagtacaatggcgctatctcagct
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321609 73 - 106955855 tttttttttt------ttttttttgagacaaagtctagctctgttgcccaggctggagtacaatggtgctatctcagct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60620797 71 +  64156825 ATATATAAtt------ttgttgttgagacaaag--tagctctgtttcccaggctggagcgcaatggcactacctcagct
i rheMac3.chr19             C 0 I 438
s macFas5.chr19              55761530 71 +  59248254 ATATATAAtt------ttgttgttgagacaaag--tagctctgtttcccaggctggagcgcaatggcgctacctcagct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866641 77 +  51301725 atatataattttgttgttgttgttgagacaaag--tagctctgtttcccaggctggagtgcaatggcgctacctcagct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47574964 74 +  50890351 ATATATAAtt---ttgttgttgttgagacaaag--tagctctgtttcccaggctggagtgcaatggcgctacctcagct
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45930268 73 +  49145316 tttttttttt------tttgttttgagacagcgttttgctctgttgcccaggctggagtgcagtggcacagtctcagct
i calJac3.chr22             I 3424 C 0
e canFam3.chr1               20036246 5018 - 122678785 I

a score=385887.000000
s hg38.chr19_GL949751v2_alt    886356 179 +   1002683 cactgcaacttccacctcccaggttcaagcaattctcgtgcctcagccttctaagtagctgggactacagccgcctgtcacca-acctggctaattttcgtatttttagtcgatatagggtttcactatgttggccaggctggtctcaagctccagacctcaggtgatcctcccaccttg
s panTro4.chr19              59882827 179 +  63644993 cactgcaacttccacctcccaggttcaagcaattctcgtgcctcagccttctaagtagctgggactacagccgcctgtcacca-acctggctaattttcgtatttttagtcgatatagggtttcactatgttggccaggctggtctcaagctccagacctcaggtgatcctcccaccttg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804710 174 +  60714840 gactgcaacctccacttcccaggttcaagcaattct-----ctcagcctcctaagtagctgggacgacagccgcctgtcagca-acctggctaattttcgtatttttagtcgatatagggtttcactatgttggccaggctggtctcaagctccagacctcaggtgatcctcccatctcg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321682 178 - 106955855 cagtacagcctccacctcccaggttcaagcaattctcgtgcctcagcctcttaagtaggtgagactacagccgcctgtcacc--acgtggctaattttcatatttttagtcgatatggggtttcactacgttggccaggctggtctcaagctccagacctcaggtgatcctcccgcctcg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55761601 174 +  59248254 cactgcaacctccacctcccaggttcaagcaattctcgtacctc------ctaagtagctgggcctacagccgcctgtcaccatgtccagctagttttcgtatttttagtcgatagagggtttcactatgttggccaggctggtctcaagctccagacctcaggtaatcctcccgcttcg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866718 180 +  51301725 cactgcaacctccacctcccaggttcaagcaattctcgtacctcagccttctaagtagctgggcctacagccgcctgtcaccatgtccagctagttttcgtatttttagtcaatagagggtttcactatgttggccaggctggtctcaagctccagacctcaggtgatcctcccgcttcg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47575038 180 +  50890351 cactgcaacctccacctcccaggttcaagcaattctcgtacctcagcctcctaagtagctgggcctacagccgcctgtcaccatgtccagctagttttcatatttttagtcgatagagggtttcactatgttggccaggctggtctcaagctccagacctcaggtgatcctcctgcttcg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45930341 180 +  49145316 cactgcaacctccaccccccaggttcaagcaattgtcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccacacgtggctaattttcatatttttagtagggggcgggtttcaccatgttggccaggctagtctcaaactcctgacctcagatgatccttccacctcg
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60620868 438 +  64156825 I

a score=59431.000000
s hg38.chr19_GL949751v2_alt    886535 42 +   1002683 gactcccaaagtgctgtgattacaggcgtgagccaccgcacc
s panTro4.chr19              59883006 42 +  63644993 gactcccaaagtgctgtgattacaggcgtgagccaccgcacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804884 42 +  60714840 gcctcccaaagtgctgcaattacaggcgtgagccaccccacc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321860 42 - 106955855 gcctcccaaagtgctgggattacaggtgtgagccatcccacc
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47866898 42 +  51301725 gcctccctaagtgctggtattacaggcgtgagccaccccagc
i papAnu2.chr19             C 0 I 28
s chlSab2.chr6               47575218 39 +  50890351 gcctccctaagtgctggtattacaggcatgagccaccCc---
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45930521 42 +  49145316 gcctcccaaagtgctgggatgataagcgtgagccactatgcc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e macFas5.chr19              55761775  0 +  59248254 C
e rheMac3.chr19              60620868 438 +  64156825 I

a score=54718.000000
s hg38.chr19_GL949751v2_alt    886577 72 +   1002683 cggccCTGttgtt---tttaaaatagagacagggtc---ttaagttgccaggctggtctggaacttctggactggagt
s panTro4.chr19              59883048 75 +  63644993 cggccCTGttgttgtttttaaaatagagacagggtc---ttatgttgccaggctggtctggaacttctggactggagt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56804926 75 +  60714840 cggccCTGTTGTCGTTTTTAAAAtagagacagggtc---ttatgttgccaggctggtctggaacttctggactggagt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321902 75 - 106955855 cggccCTGCTGttgtttttaaaatagagacagggtc---ttatgttgccaggcttgtctggaacttctggactggagt
i nomLeu3.chr10             C 0 C 0
s calJac3.chr22              45930563 76 +  49145316 ccgccCTGCTGCTGtttttgaaatagagacagagttttgttacattaacaggctggtctagaacttctgggctgga--
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e chlSab2.chr6               47575257  0 +  50890351 C
e papAnu2.chr19              47866940 28 +  51301725 I
e macFas5.chr19              55761775  0 +  59248254 C
e rheMac3.chr19              60620868 438 +  64156825 I

a score=3611.000000
s hg38.chr19_GL949751v2_alt    886649 14 +   1002683 gat-cacccacctga
s panTro4.chr19              59883123 14 +  63644993 gat-cacccacctga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805001 15 +  60714840 gatccacccacctca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321977 15 - 106955855 gatccacccacctca
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47866968 14 +  51301725 ggc-caccaccccca
i papAnu2.chr19             I 28 C 0
s chlSab2.chr6               47575257  1 +  50890351 --------------a
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45930639  9 +  49145316 ------cccaccaca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e macFas5.chr19              55761775  0 +  59248254 C
e rheMac3.chr19              60620868 438 +  64156825 I

a score=549830.000000
s hg38.chr19_GL949751v2_alt    886663 273 +   1002683 gcttcccaaagtgcggggattgcaagcgtcagccaccacccccagTGTTGTGTTTT--------TGTTTGTTTTAccaggctggagtgcagtggtgcgatcacagctcactgcagccttaacttccctggctcaggtgatcctcccacctcagcctcctcagtagctgggactacaggtgcatgccactatgcccagcacaatttttttt-ttttttgtattt-ttttgtagagacagggttttgccatgttgcccaggctggtctcaaactc-------caagcaatcc
s panTro4.chr19              59883137 267 +  63644993 gcttcccaaagtgcggggattacaagcgtcagccaccacccccagTGTTGTGTTTT--------TGTTTGTTTTAccaggctggagtgcagtggtgcgatcacagctcactgcagccttaacttccctggctcaggtgatcctcccacctcagcctcctcagtagctgggactacaggtgcatgccgctatgcccagcacaatttttttt-------gtattt-ttttgtagagacagggttttgccatgttgcccaggctggtctcaaactc-------caagcaatcc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805016 271 +  60714840 gcttcccaaagtgcggggattacaagcgtcagccaccacccccagTGTTGTGTTTT--------TGTTTGTTTTAcctggctggagtgcagtggtgtgaccaaagctcactgcagccttaacttccctggctcaggtgatcctcccacctcagcctcctcagtagctgggactacaggtgcatgccactatgcccagcacatctttttat---ttttttattt-ttttgtagagacagggttttgccatgttgcccaggctggtcttagactc-------caagcaatcc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103321992 271 - 106955855 gcttcccaaagtgcggggattacaaacatcagccaccacccccagTGTTGTGTT------------TTTGTTTTAccaggctggagtgcagtggtgcgatcacagctcactgcagccttaacttctctagctcaggtgatcctcccacctcagcctcctcagtagctgggaccacaggtgcatgccactatgcccagcacattttttttttttttttgtatttctttcgtagagacagggttttgccatgttgcccaggctggtctcaaactc-------caagcagtcc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55761775 270 +  59248254 gcctccctaagtgcggggattacaagcgtcagccaccacccccagTGTTGTGTT------------TTTGTTTTAccaggctagagtgcagtggtgcgatcacagctcactgcagccttaacttccctagctcaggtgatcctcccacctcagtgtcctgagtagctgggactacaggtgcatgccactatgcccagcgcttttttgtttgtttgtttgcttt-ttttgtggagacagagttttgccatgttggccagtctggtctgaaactc-------caagcaatcc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47866982 258 +  51301725 gcctcccaaagtgcggggattacaagcctcagccaccacccccagtgttgtgtt------------tctgttttaccaggctggagtgcagtggtgcgatcacagctcactgcagccttaacttccctagctcaggtgatcctcccgcctcagcatcctgagtagctgggactacaggtgcatgccactatgcccagcactttt-------tttgtttg------tttgtagagacagagttttgccatgttggccaggctggtctgaaactc-------taagcgatcc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47575258 262 +  50890351 gcttcccaaagtgcggggattacaagcctcagccaccacccccagTGTTGTGTT------------TTTGTTTTAccaggctggagtgcagtggtgcgatcacagctcactgcagccttaacttccctagctcagttgatcctcccacctcagcgtcctgagtagctgggactacaggtgaatgccactatgcccagcacttt--------tttgtttgcttt-ttttgtagagacagagttttgccatgttggccaggctggtctgaaactc-------caagcaatcc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45930648 281 +  49145316 gctttccaaagtgctgggatgacaagcgtgagccaccgcacccggTGtttttttttttctgttattttttttttaccaggctggggtgcagtggtgtgattgtggctcactgcagccttaaa-tcctgggctcaggtgatcctcccacttcagcctccttagtagctgggattacaggtgcatgccaccgtgcccagcacatga-------atttttgtattt-tttggtagagagagggttttgccatgctctccaggctggtctcaaactccttggcgcaagcaatcc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60620868 438 +  64156825 I

a score=396688.000000
s hg38.chr19_GL949751v2_alt    886936 142 +   1002683 tcccaccttggcttcccaaagtgtttggggttccaggtgtgagccatggccccccggccAGCTTCAGTAAAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCACTAAGTTATCTTTAA------GCCtttttttttttt---
s panTro4.chr19              59883404 141 +  63644993 tcccaccttggcttcccaaagtgtt-ggggttccaggtgtgagccatggccccccggccAGCTTCAGTAAAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCGCTAAGTTATCTTTAA------GCCtttttttttttt---
i panTro4.chr19             C 0 I 12
s ponAbe2.chr19              56805287 136 +  60714840 ccccaccttggcttcccaaagtgtt-ggggttccaggtgtgagccatggccccccggccAGCTTCAGTACAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCACTAACTCATCTTCAA------GCCttttttt--------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322263 140 - 106955855 tcccgccttggcttcccaaagtgtt-ggggttccaggcgtgagccatggccccccggccAGCTTCAGTAAAGTAAAAGCCACACACCTGTGTCCTGA-ACCAGGCTCCACCACTAACTCATCTTCAA------GCCtttttttttttt---
i nomLeu3.chr10             C 0 I 23
s rheMac3.chr19              60621306 140 +  64156825 tcccgccttggcttcccaaagtgct-ggggttacaggtgtgagccacgg-cccccagccagcttcagtaAAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCTCTAACTCATCTTCAA------GCCtttttctttttt---
i rheMac3.chr19             I 438 I 1988
s macFas5.chr19              55762045 140 +  59248254 tcccgccttggcttcccaaagtgct-ggggttacaggtgtgagccacgg-cccccagccAGCTTCAGTAAAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCTCTAACTCCTCTTCAA------GCCtttttttttttt---
i macFas5.chr19             C 0 I 11
s papAnu2.chr19              47867240 140 +  51301725 tcccaccttggcttcccaaagtgct-gggattacaggtgtgagccacgg-gcCCCAGCCAGCTTCAGTAAAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCTCTAACTCATcttcaa------gctcttttttttttt---
i papAnu2.chr19             C 0 I 17
s chlSab2.chr6               47575520 140 +  50890351 ttccgccttggcttcccaaagtgct-ggggttacaggtgtgagccatgg-cccccagccAGCTTCAGTAAAGTAAAAGCCACACACCTGTGTCCTGAGACCAGGCTCCACCTCTAACTCATCCTCAA------GCCtttttttttttt---
i chlSab2.chr6              C 0 I 15
s calJac3.chr22              45930929 149 +  49145316 tcccaccttggcttcccaaagtgtt-ggtgttacaagtgtgagccacgg-cacctggtcAGCTTCAGTAAAGTAAAAGCCAGACACCTGTGTCCTGAGACCAGGCTCCACCACTCACTCACCTTCAACTCAATGttttttccttttttttt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I

a score=41621.000000
s hg38.chr19_GL949751v2_alt    887078 24 +   1002683 --gagacagtttcactcttgtcgccc
s panTro4.chr19              59883557 24 +  63644993 --gagacagtttcactcttgtcaccc
i panTro4.chr19             I 12 C 0
s ponAbe2.chr19              56805423 24 +  60714840 --gagacagtttcactcttgtcaccc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322426 24 - 106955855 --ttgacagtttcactcttgtcgccc
i nomLeu3.chr10             I 23 C 0
s macFas5.chr19              55762196 24 +  59248254 --gagacagtttcactcttgttgccc
i macFas5.chr19             I 11 C 0
s papAnu2.chr19              47867397 24 +  51301725 --gagacagtttcactcttgttgccc
i papAnu2.chr19             I 17 C 0
s chlSab2.chr6               47575675 24 +  50890351 --GAGACAGTTTCACTCTTGTTGCCC
i chlSab2.chr6              I 15 I 1446
s calJac3.chr22              45931078 24 +  49145316 tagatggagtctagctctc-tcacc-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60621446 1988 +  64156825 I

a score=185907.000000
s hg38.chr19_GL949751v2_alt    887102 124 +   1002683 caggctggagtgcagtggcgccatgtcagctcaccacaacctctgcctcccactcccaggttcaagcgattctcctgcctcagcctcccaagtagctggaactacaggcacctgccaccacgcc
s panTro4.chr19              59883581 124 +  63644993 caggctggagtgcagtggcgccatgtcagctcaccacaacctctgcctcccactcccaggttcaagcgattctcctgcctcagcctcccaagtagctggaactacaggcacctgccaccacacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805447 124 +  60714840 caggctggagtgcagcggtgccatgtcagctcaccacaacctccgcctcccactctcgggttcaagcgattctcctgcctcagcctcccaagtagctggaactacaggcgcacaccaccacact
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322450 124 - 106955855 caggctggagtgcaatggcaccatgttggctcaccacaacctctgcctcccactcccgggttcaagcaattctcccgcctcagcctcccaagtagctggaactatgggtgcccgccaccagacc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55762220 113 +  59248254 caggctggagttcaatg-----------gctcaccacaccctcggcctcccactcccgggttctagcgattctcctgcctcagcctcccaagtagccaggactacaggcatgtgtcaccacgcc
i macFas5.chr19             C 0 I 1478
s papAnu2.chr19              47867421  75 +  51301725 caggctggagttcaatg-----------gctcaccaca--------------------------------------gcctcagccccccaagtagccgggactacaggcatgtgtcaccacacc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47577145 115 +  50890351 caggctggagtgcagtggcgccatctcagctcactgca------agctctgcctcccgggttcatgccattct---gcctcagcctcccgagtagctgggactacaggtgcccaccaccacgcc
i chlSab2.chr6              I 1446 C 0
s calJac3.chr22              45931102 117 +  49145316 caggctggagtgcaatggcacaatctcgtctcactgcaacccctgc------ctcctgagttcaagcgattttcctgcttaaggctctcgagtagctgtgactacaggcacacaccacc-cact
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60621446 1988 +  64156825 I

a score=125174.000000
s hg38.chr19_GL949751v2_alt    887226 61 +   1002683 cggctaattttt-tgtattttt--agtagagacggggtttcactgtgttagccaggatggtctc
s panTro4.chr19              59883705 61 +  63644993 cggctaattttt-tgtattttt--agtagagacggggtttcactgtgttagccaggatggtctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805571 61 +  60714840 cggctaattttt-tgtattttc--agtagagacggggtttcactgtgttagcaaggatggtctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322574 61 - 106955855 cggctaattttt-tgtattttt--agtagagacggggtttcactgtgttagccaggatggtctc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55763811 61 +  59248254 cggctaattttt-tgtattttt--agtagagatggggtttcactgttttagccaggatggtctt
i macFas5.chr19             I 1478 C 0
s papAnu2.chr19              47867496 60 +  51301725 cgactaa-tttt-tgtactttt--agtagagacggggtttcatcatattggccaggctggtctc
i papAnu2.chr19             C 0 I 1592
s chlSab2.chr6               47577260 61 +  50890351 cggctaatgttt-tgtattttt--agtagagacggggtttcactgttttagccagaatggtctt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45931219 64 +  49145316 tggccaccttttgtatattttttaaatagagatggggtttcaccatgttggccaggctggtctt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60621446 1988 +  64156825 I

a score=71186.000000
s hg38.chr19_GL949751v2_alt    887287 33 +   1002683 gatctcctgacctca--cgatccgcccgcctcggc
s panTro4.chr19              59883766 33 +  63644993 gatctcctgacctca--cgatccgcccacctcggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805632 33 +  60714840 gatctcctgacctca--tgatccgcccgcctcggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322635 33 - 106955855 gatctcctgacctcg--tgatccgcccacctcagc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55763872 33 +  59248254 gatctcctgacctca--tgatccacctgcctcagc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47869148 33 +  51301725 gatctcctgacctcg--tgatccacctgcctcagc
i papAnu2.chr19             I 1592 C 0
s chlSab2.chr6               47577321 33 +  50890351 gatctcctgacctcg--tgatccacctgcctcagc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45931283 35 +  49145316 gaactcctgaccccaagtgatctgcctgcttcagc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e rheMac3.chr19              60621446 1988 +  64156825 I

a score=125391.000000
s hg38.chr19_GL949751v2_alt    887320 42 +   1002683 ctcccaaagtgctgggattgcaggcgtgagccaccgcgcccg
s panTro4.chr19              59883799 42 +  63644993 ctcccaaagtgctgggattgcaggcgtgagccaccgcgcctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805665 42 +  60714840 ctcccaaagtgctgggattacaggcgtgagccactgcgccgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322668 42 - 106955855 ctcccaaagtgctgggattacaggcgtgagccactgcgtccg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60623434 42 +  64156825 ctcccaaagtgctgggattacaggcgtgagccaccgtgcctg
i rheMac3.chr19             I 1988 C 0
s macFas5.chr19              55763905 41 +  59248254 -tcccaaagtgctgggattacaggcgtgagccaccgtgcctg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47869181 41 +  51301725 -tcccaaagtgctgggattacaggcgtgagccaccgtgcctg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47577354 41 +  50890351 -tcccaaagtgctgggattataggcgtgagccaccgtgcctg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45931318 42 +  49145316 ctcccaaagcgctgggattacaggtatgagccatctcacctg
i calJac3.chr22             C 0 I 1750
e canFam3.chr1               20036246 5018 - 122678785 I

a score=129125.000000
s hg38.chr19_GL949751v2_alt    887362 54 +   1002683 gcTGTGTGTTTGCATTATCATATTCAGCCCAGTTTTCACGAAGTTTCTTGTCTC
s panTro4.chr19              59883841 54 +  63644993 gcTGTGTGTTTGCATTTTCATATTCACCCCAGTTTTCACGAAGTTTCTTGTCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805707 54 +  60714840 gctGTGTGTTTGCATTTTCTTATTCACCCCAGTTTTCACAAAGTGTCTTGTCTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322710 54 - 106955855 gcTGTGTGTTTGCATTTTCATATTCACCCCAGTTTTCACGAAGTGTCTTGTCTC
i nomLeu3.chr10             C 0 I 123
s rheMac3.chr19              60623476 54 +  64156825 gctgtgtgtttgcattttcaCATTCACCCCAGTTTTCATGAAGTGTCTTATCTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55763946 54 +  59248254 gcTGTGTGTTTGCATTTTCACATTCACCCCAGTTTTCATGAAGTGTCTTATCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47869222 54 +  51301725 gctgtgtgTTTGCATTTTCACATTCACCCCAGTTTTCATGAAGTGTCTTATCTC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47577395 54 +  50890351 gcTGTGTGTTTGCATTTTCACATTCACCCCAGTTTTCATGAAGTGTCTTATCTC
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45931360 1750 +  49145316 I

a score=440166.000000
s hg38.chr19_GL949751v2_alt    887416 188 +   1002683 CTGGGTGATCCACGTAGCTCCCCACTTCCTTATCTGATCTATGCTTGTCCTTTCATTGTTGTGTTACTACTTTGCTATAATGAGAGAGTGTTTTCGCTTTATAGGTTAACTTTTAGAACCTGAGCAGCCCCTCAGGGAAAACCCTGACAGTAGCTGGTTATTTTGCAATTAGAAAAACTAGCTGGGCA
s panTro4.chr19              59883895 188 +  63644993 CTGGGTGATCCACATAGCTCCCCACTTCCTTATCTGATCTATGCTTGTCCTTTCATTGTTGTGTTACTACTTTGCTATAATGAGAGAGTGTTTTCGCTTTATAGGTTAACTTTTAGAACCTGAGCAGCCCCTCAGGGAAAACCCTGACAGTAGCTGGTTATTTTGCAATTAGAAAAACTAGCTGGGCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805761 188 +  60714840 CTGGGTGATCCACATAGCTCCCCACTTCCTCATCTGATCTATGCTTGTCCTTTCATTGTTGTGTTACTACTTTGCTATAATGAGAGAGTGTTTTCGCTTTACAGGTTAACTTTTAGAACCTGAGCAGCCCCTCGGAGAAAACCCTGACAGTAGCTGGTTATTTTGCAATTAGAAAAACTAGCTGGGCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103322887 188 - 106955855 CTGGGTGATCCACATAGCTCCCCACTTCCTCATCTGATCTATGCTTCTCCTTTCATTGTTGTATAACTACTTTGCTATAATGAGAGAGTGTTTTTGCTTTATAGGTTAACTTTTAGAACCTGAGCAGCCCCTCAGGGAAAACCCTGACAGTAGCTGGTTATTTTGCAATTAGAAAAACTAGCTGGGCA
i nomLeu3.chr10             I 123 C 0
s rheMac3.chr19              60623530 186 +  64156825 CTGGGTGATCCACATAGCTTTCCACTTCCTCATCCGATCTATGCTTGTCCTTTCATTGTTGTGTTACTACTTTGTTGTAAT--GAGAGTGTTTTTACTTCATAGGCTAACTTTTAGAGCCTGAGCAGTCCCTCAGGGAAAACCCTAACAGTAGCTGGTTATTTTGCAATGAAAATAACTAGCTGGGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55764000 188 +  59248254 CTGGGTGATCCACATAGCTTTCCACTTCCTCATCCGATCTGTGCTTGTCCTTTCATTGTTGTGTTACTACTTTGTTGTAATGAGAGAGTGTTTTTACTTCATAGGCTAACTTTTAGAGCCTGAGCAGTCCCTCGGGGAAAACCCTAACAGTAGCTGGTTATTTTGCAATGAAAATAACTAGCTGGGCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47869276 182 +  51301725 CTGGGTGATCCACATAGCTTTCCACTTCCTCATCCGATCTATGCTTGTCCTTTCATTGTTGTGTTACTGCTTTGTTGTAATGAGAGAGTGTTTTTACTTCATAGGCTAACTTTTAGAGCCTGAGCAGTCCCTCAGGGAAAACCCTAACA------GGTTATTttgcaattaaaataactagCTGGGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47577449 188 +  50890351 CTGGGTGATCCACATAGCTTTCCACTTCCTCATCCGATCTATGCTTGTCCTTTCATTGTTGTGTTACTACTTGGTTGTAATGAGAGAGAGTTTTTACTTCATAGGCTAACTTTTAGAGCCTGAGCAGTCCCTCAGGGAAAACCCTAACAGTAGCTGGTTATTTTGCAATTAGAAAAACTAGCTGGGCA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20036246 5018 - 122678785 I
e calJac3.chr22              45931360 1750 +  49145316 I

a score=1676010.000000
s hg38.chr19_GL949751v2_alt    887604 630 +   1002683 ctgaggcaggtgaatcac--gaggtcaggagttcgagaccagcctggccaacttggtgaaacccccc-------atctctactaaaaatacaaaaaaattagctgggcacagtggtgaatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaatccgggaggcagaggttgtagtgagccgagattgcagcactgcactccagccagggtgac-aaagtgagactccgtctcaaaaaaaaaaaaaaaaaaaata------------caaaaaGtagctgagc---gtggtggtgggtgcccata--atcccagctagtcgggaggctgaggcaggagaactgtttgaacctgggaggcagaggttgcagtgagctgagatcgtactactgtactccagcctgggctgcagagtgaaa--ctatctcaaaaataagtaaataaaagtaaaaTGAGTTGAggtcttgctctgttgcccagatgggagtgcagtggcacaatcaaggctcactgcagtttcagtctcccaggctcaagcaatcctcccactgcagcctcctgagtagctgggactacaggcatgtaccaccacccactgct---aacttatttttcatggagatgggggtctcactatgttgcccaggc
s panTro4.chr19              59884083 630 +  63644993 ctgaggcaggtgaatcac--aaggtcaggagttcgagaccagcctggccaacttggtgaaaccccccccccccaatctctactaaaaatacaaaaaa-ttagctgggcacagtggtgaatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaatccgggaggcagaggttgtagtgagccgagattgcagcactgcactccagccagggtgac-aaagtgagactctgtctcaaaaaaaaaaaaaaaaaaaa------------------aaGGagctgagc---gtggtggtgggtgcccata--atcccagctagtcgggaggctgaggcaggagaattgtttgaacctgggaggcagaggttgcagtgagctgagatcgtactactgtactccagcctgggctgcagagtgaaa--ctctctcaaaaataagtaaataaaaataaaaTGAGTTGAggtcttgctctgttgcccagatgggagtgcagtggcacaatcaaggctcactgcagtttcagtctcccaggctcaagcaatcctcccactgcagcctcctgagtagctgggactacaggcatgtaccaccacccactgct---aacttatttttcgtggagatgggggtctcactatgttgcccaggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56805949 617 +  60714840 ccaaggcgggtgaatcac--gaggtcaggagtttgagaccagcctgg-caacttggcgaaaccccc--------atctctactaaaaatacaaaaaa-ttagctgggcatagtggtgaatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaatcccggaggcggaggttccagtgagccgagattgcagcactgcactccagccagggtgac-aaagtgagattccgtctcaaaaaaaaaaatacaaa---------------------aaGtagctgagc---gtggtggtgggtgcccata--atcccagctactcgagaggctgaggcaggagaattgtttgaacctgggaagcagaggttgcagtgagctgagatcgtactactgcactccagcctgggcagcagagtgaaa--ctgtctcaaaaataagt-aataaaaataaaaTGAGTTGAggtcttgctctgttgcccagatgggagtgcagtggcacaatcaaggctcactgcagtttcagtctcccaggctcaagtgatcctcccaccgcagcctcctgagtagctgggactacaggcatgtaccaccacccactgct---aacttattttttgtggagatgggggtctcactatgttgcccaggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103323075 642 - 106955855 ccgaggtgggtgaatcac--gaggtcaggagttcgagaccagcctggccaacttggtgaaaccccc--------atctgtactaaaaatacaaaaaa-ttagctgggcatagtggtgaatgcctgtaatcccagctactcgggaggctgagacaggagaattgcttgaatccgggagatagaggttgcagtgagccgagattgcagcactgcactccagccagggtgac-aaagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCAAAAAGtagccgagcgtggtggtggtgggtgcccata--atcccagctactcgggaggctgaggcaggagaattgtttgaacctgggaggcggaggttgccgtgaactgagatcatactactgcactccagcctgggcagcagagtgaaa--ctgtctcaaaaataagtaaataaaaataaaatgagctgaggtcttgctctgttgtccagatgggagtgcagtggcacaatcaaggctcactgcagtttcaatctcccaggctcaagcaatcctcccatcgcagcctcctgagtagctgggcctacaggcatgtacc-ccacccactgct---aacttactttttgtggagatgggggtctcactatgttgcccaggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60623716 612 +  64156825 Tcgaggtgggcgaatcag--gaggtcaggagttcgagaccaacctggccaacttggtgaaacccc---------atctctactaaaaatacaaaaa--ttagctgggcatagtggtgaacacctgtaatcccagctgcacgggtggctgaggcaggagaattgcttgaatccgggaggtggaggttgcagcgagctgagattgtagcagtgcactccagccagggtgac---agtgacactccgtctcaaaaaaaat----aaata--------------------aaGtagctgagt---gtggtggtgggtgcccata--atcccagctactcggaagactgaggcaggagaattgtttgaacctgggaggcggaggttgcaatgagctgagatcataccactgtactccagcctgggcagcagagtgaaa--ctatctcaaaaataagtaaataaaagtaaaaCgagatgaggtttcactctgttgtccagatgggagtgcagtggcaccatcaagcctcactgcagtttcaatctcccaggctcaagcgatcctcccacctcggcctcctgagttgctgggactacaggcatgcaccaccacccactgct---aacttattttttgtggagatgggggtctcactgtgttgcccaggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55764188 613 +  59248254 Tcgaggtgggcgaatcag--gaggtcaggagttcgagaccaacctggccaacttggtgaaacccc---------atctctactaaaaatacaaaaa--ttagctgggcatagtggtgaacacctgtaatcccagctgcacgggtggctgaggcaggagaattgcttgaatccgggaggtggaggttgcagcgagctgagattgtagcagtgcactccagccagggtgac---agtgacactccgtctcaaaaaaaataaaaaaata--------------------aaGtagctgagt------gtggtgggtgcccata--atcccagctactcggaagactgaggcaggagaattgtttgaacctgggaggcggaggttgcaatgagctgagatcataccactgtactccagcctgggcagcagagtgaaa--ctatctcaaaaataagtaaataaaagtaaaaCgagatgaggtttcactctgttgcccagatgggagtgcagtggcaccatcaagcctcactgcagtttcaatctcccaggctcaagcgatcctcccacctcggcctcctgagttgctgggactacaggcatgcaccaccacccactgct---aacttattttttgtggagatgggggtctcactgtgttgcccaggc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47869458 614 +  51301725 TCGAGGCGGGcgaatcag--gaggtcaggagttcgagaccaacctggccaacttggtgaaacccc---------atctctactaaaaat-caaaaa--ttagct-ggcatagtggtgaacacctgtaatcccagctacacgggtggctgaggcaggagaattgcttgaatccgggaggtggaggttgcagtgagctgagattgtagcaatgcactccagccagggtgac---agtgacactccgtctcaaaaaaaataaaaaaata--------------------aagtagctgagt---gtggtggtgggtgcccata--atcccagctactcggaagactgaggcaggagaattgtttgaacctgggaggcggaggttgcagtgagctgagatcacaccactgaactccaaccagggcagcagagtgaaa--ctgtctcaaaaataagtaaataaaagtgaAACGAGAttaggtttcactctgttgcccagatgggagtgcagtggcacaatcaagcctcactgcagtttcaatctcccaggctcaagcgatcctcccacctcggcctcctgagttgctgggactataggcatgcaccaccagccACTGCT---aacttattttttgtggagatgggggtctcactgtgttgcccaggc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47577637 614 +  50890351 Tcgagaggggcgaatcag--gaggtcaggagttcgagaccaacctggccaacttggtgaaacccc---------atctctactaaaaatacaaaaa--ttagctgggcatagtggtgaacacctgtgatcccagctacacgggcagctgaggcaggagaattgcttgaatccgggaggtggaggtcgcagcgagctgagattgtagcagtgcactccagccagggtgac---agtgacactccgtctcaaaaaaaa--aataaata--------------------aaGtagctgagt---gtggtggtgggtgcccata--atcccagctactcggaagactgaggtaggagaattgtttgaacctgggaggcggaggttgcagtgagctgagatcataccactgtactccagccagggcagcagagtgaaa--ctatctcaaaaataagtaaataaaagtaaaaCgagatgaggtttcactctgttgcccagatgggagtgcagtggcaccaccaggcctcactgcagtttcagtctcccaggctcaagcgatcctcccacctcggcctcctgagttgctggggctacaggcacgtaccaccacccactgct---aacttattttttgtggagatgggggtctcactgtgttgcccaggc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45933110 622 +  49145316 ccaaagtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggaaaaacctt---------ctttctcctaaaaatacaaaaaa-gtatccaggtgtggtggtgcacacctgtaatcccagctactcgggaggccgaggcgggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatggtgccattgcacttcagcctgggcaatgagagcgaaactccatctcaaaataaataataaaataaaat----------------gaggagctgggt---gcggtgg-gcatgcacgtgtcatctcatctactgaggaggctgaggcaggagaatggcttgaaaccagcaggcggaggttgcagtgagccaagatcatgccattgcactccagcctgggggagaaagtgagactctgtctcaaaaataa---aat-aaattaaaaagagaTGAggtcctgctctgttgcccagatgggagtgcagtgggacaatcaagg------gcagttttaacctcccaggttcaagcgatcctcccacctcagcctcctgagtagccgggactgcagctgcacaccaccccctcctaccatgaacttattttttgtggaaatgggggtctcactatgttgcccaggc
i calJac3.chr22             I 1750 C 0
e canFam3.chr1               20036246 5018 - 122678785 I

a score=1358383.000000
s hg38.chr19_GL949751v2_alt    888234 422 +   1002683 tggGAGTTTGTTCTTGAAGAAGCAGGGTAGATGGTGA--GTGTCCTTGTTCGTGGCACAGCAGGAACTGGCATTTGAGACAGGAGTGCTAATCACCATCCCTCTCCACTCCTCCCTTGATTGTC---------------ATCACAGCTCCCACGTGGGACAAGATGGTGTCTTCGGCGCAGATGGGCTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGTTGAGCAAGTTCAAGTATCTGATCACGACCTTCTCCCTGGCACACGAGCTCCAGAAGATCCCCCACAAGGAGGTAGACAAGGCTGATGGGAAGCAACTGGTAGAAATCCTCACCACCCATTGTGACAGCTACTGGGTGGAGATGGCGAGCCTCCAGGTCTTTGAAAAGATGCACCGAATGGATCTGTCTGAGAGAGCAAAGGATGAAGTC
s panTro4.chr19              59884713 410 +  63644993 tggGAGTTTGTTCTTGAAGAAGCAGGGTAGATGGTGA--GTGTCCTTGTTCATGGCACAGCAGGA------------GACAGGAGTGCTAATCACCATCCCTCTCCATTCCTCCCTTGATTCTC---------------ATCACAGCTCCCACGTGGGACAAGATGGTGTCTTCGGCGCAGATGGGCTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGTTGAGCAAGTTCAAGTATCTGATCACGACCTTCTCCCTGGCACACGAGCTCCAGAAGATCCCCCACAAGGAGGTAGACAAGGCTGATGGGAAGCAACTGGTAGAAATCCTCACCAGCCATTGTGACAGCTACTGGGTGGAGATGGCGAGCCTCCAGGTCTTTGAAAAGATGCACCGAATGGATCTGTCTGAGAGAGCAAAGGATGAAGTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56806566 422 +  60714840 tggGAGTTTGTTCTTGAAGAAGCAGGGTAGATGGTGA--GTGTCCTTGTTCATGGCACAGTGGGGACTGGCATTTGAGACAGGAGTGCTAATCACCATCCCTCTCCATTCCTCCCTTAATTCTC---------------ATCAGAGCTCCCACGTGGGACAAGATGGTGTCTTCTGCGCAGATGGGCTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGTTGAGCAAGTTCAAGTTTCTGATCACGACCGCCTCCCTGGCACATGAGCTCCAGAAGATCCCCCACAAGGAGGTAGACAAGGCTGATGGGAAGCAACTGGCAGAAATCCTCACCAGCCATTGTGACAGCTACTGGGTGGAGATGGCGAGCATCCAGGTCTTTGAAAAGATGCACCGAATGGATCTGTCTCAGAGAGCAAAGGATGAACTC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103323717 422 - 106955855 tggGAGTTTGTTCTTGAAGAAGCAGGGTAGATGGTGA--GTGTCCTCGTTCATGGCACAGTGGGGACTGGCATTTGAGACAGGAGTGCTAATCACCATCCCTCTCCATTCCTCCCTTAATTCTC---------------ATCACAGCTCCCACGTGGGACAAGATGGTGTCTCCGGCGCCGATGGGCTTCAACCTGCCGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGTTGAGCAAGTTCAAGTCTCTGATCACGACCGTCTCCCTGGCAAATGAGCTCCAGAAGATCCCCCACAAGGAGGTAGACAAAGCTGATAGGAAGCAACTGGCAGAAATCCTCACCAGCCATTGTCACAGCTACTGGGTGGAGATGGCGACCATCCAGGTCTTTGAAAAGATGCACCGAATGGATCTGTCTGAGAGTGCAAAGGACGAACTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624328 421 +  64156825 tggGAGTTTGTTCTTGAAGAAGCAGGGTAATGTGAGA--GTTCCCTTGTTCATGGCACCGAGGGGACTGGCA-CTGAGACAGGAGTGCTGATCACCATCCCTCTCCATTCCTCCCTTAATTCTC---------------CTCAGAACTCCCACGTGGGACAAGATGGTGTCTTCGACCCAGGTGAACTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGCTGAGCAAGTTCAAGTCTCTGCTCAGGACAGTCTCCCTGGGAAATGAGGTCCAGAAGATCCCCCAGAAGGAGGTAGACGAGGCGGATGGGAAGCAACTGGCGGAAATCCTCATCAGCCACTGTCACAGCTACTGGACGGAGTTGGCGACCATCCAGGTCTTTGAAAAGATGCATCGAGTGGATCTGTCTGAGAGAGCAAAGGACGAACTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55764801 421 +  59248254 tggGAGTTTGTTCTTGAAGAAGCAGGGTAATGTGAGA--GTTCCCTTGTTCATGGCACCGAGGGGACTGGCA-CTGAGACAGGAGTGCTGATCACCATCCCTCTCCATTCCTCCCTTAATTCTC---------------CTCAGAACTCCCACGTGGGACAAGATGGTGTCTTCGACCCAGGTGAACTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGCTGAGCAAGTTCAAGTCTCTGCTCAGGACAGTCTCCCTGGGAAATGAGGTCCAGAAGATCCCCCAGAAGGAGGTAGACGAGGCGGATGGGAAGCAACTGGCGGAAATCCTCATCAGCCACTGTCACAGCTACTGGACGGAGTTGGCGACCATCCAGGTCTTTGAAAAGATGCATCGAGTGGATCTGTCTGAGAGAGCAAAGGACGAACTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870072 420 +  51301725 tgggagtttGTTCTTGAAGAAGCAGGGTACTGTGAGG--GTGCCCTTGTTCATGGCACAGAGGGGACTGGCA-TTGAGACAGAAGTGCTGATCACCATCCCTCTCCGTTCCTCCCTTAATTCTC---------------ATCAGAACTCCCACGTGGGACAAGATGGTGTCTTCGACCGAGGTGAACTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGCTGAGCAAGTTCAAGTCTCTGCTCAGGACAGTCTCCTTGGGAAATGAAGTCCAGAAGATCCCCCAGAACGAGGTAGACGAGGCGGATGGGAAGCAACTGGCGGAAATCCTCATCAGCCATTGTCACAGCTACTGGACGGAGTTGGCGACCATCCAGGTCTTTG-AAAGATGCACCGAGTGGATCTGTCTGAGAGAGCAAAGGACGAACTC
i papAnu2.chr19             C 0 M 192
s chlSab2.chr6               47578251 421 +  50890351 tggGAGTTTGTTCTTGAAGAAGCAGGGTAATGTGAGA--GTGCCCTTGTTCATGGCACTGAGGGGACTGGCA-TTGAGACAGGAGTGCTGATCACCATCCCTCTCCATTCCTCCCTTAATTCTC---------------ATCAGAACTCCCACGTGGGACAAGATGGTGTCTTCGACCCAGGTGAACTTCAACCTGCAGGCTCTCCTGGAGCAGCTCAGCCAGGATGAGCTGAGCAAGTTCAAGTCTCTGCTCAGGACAGTCTCCCTGGGAAATGAGGTCCAGAAGATCCCCCAGAAGGAGGTAGACGAGGCGGATGGGAAGCAACTGGCGGAAATCCTCATCAGCCATTGTCACAGCTACTGGACGGAGTTGGCGACCATCCAGGTCTTTGAAAAGATGCACCGAGTGGATCTGTCTGAGAGAGCAAAGGATGAACTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45933732 408 +  49145316 tggGAATTTGTTCTTGAAGAAGCAGGGTAGATGGTGACTGTATGCTTGTCCATGGCACAGAGGGGACTGGCT-GTGAGACAGGGGTGCTGAC---------------GTCCTCCCTTCATTCTC---------------ACTGGAGCTCCCAAGTGGGACGAGATGGTGTCTTCTGTGCCACTGGACTTCAACCTGCAGGCTCTTCTGGAGCAGCTCAGCCAGGATGAGTTGAGCCAGTTCAAGTCTCTGATCAGGACCATCACCCTGGGAAATGAGCTACAGAAGATCCCCCAAACAGAGGTAGACGAGGCTGATGGGAAGCAACTGGCAGAAATCCTCACCAGCCATTGCCCCAGCTACTGGATGGAGACGGCCACCATCCAGGTCTTTGAAAAGATGCACCGGGTGGATCTGTCTGAGAGAGTGAAGGATGAACTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20041264 437 - 122678785 TGGGAGTTGGTTCCTAAAGCAGCAGGTTGGGCAGTGATAATTGCCCAGTTCTTGGCACAGAGGCAACTGTCATTTGAAGTAGGAATACTGAT--TCGCTCTCTTTCATTTCTTCCCTTATTCTTCTTTAATGCCCAAAGCTCAGATCTCTCATGTAGAACAAGATGGAACCTTCTGCACAGCTGGGTTTCAACCTGCAGCCCCTTCTAGAACAGTTTGCCCAGGATGAGCTGAGCCAGTTCAAGTCTCTGTTGAGGCCCCTTTCCCTACAAGATGAATTACAGCACATCCCTGCGACAGAGGTAGAGGAGGCCGATGGGAAGCAGCTGGCAGAAATTCTTATCAACCACTGCCCCAGCCACTGGGTAGAGATGGTGACCATCCAGATTTTTGACAAGATGAACCGAACCGATCTGTCTGAGAGAGCAAAGGATGAGCTC
i canFam3.chr1              I 5018 C 0

a score=167046.000000
s hg38.chr19_GL949751v2_alt    888656 65 +   1002683 AGAGGTGAGTGGAAATCGGTCCACACTGTGTCCTAGGAGGAAGCAGGCGTCCTCTCCAGGACTTT
s panTro4.chr19              59885123 65 +  63644993 AGAGGTGAGCGGAAATCGGTCCACACTGTGTCCTAGGAGGAAGCAGGCGTCCTCTCCAGGACTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56806988 65 +  60714840 AGAGGTGAGTGGAAATCGGTCTACACTGTGTCCTAGGAGGAAGCAGGCGTCCTCTCCAGGACTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324139 65 - 106955855 AGAGGTGAGTGGAAATCGGTCCACCCTGTGTCCTAGGAGGAAGCAGGTGTCCTCTCCAGGACTTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624749 63 +  64156825 AGAGGTGAGCAGAAATCGGTCCGCACTGTGTCCTAGGAGGAAGCAGGCGACCTCTCCAGGACT--
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765222 63 +  59248254 AGAGGTGAGCAGAAATCGATCCGCACTGTGTCCTAGGAGGAAGCAGGCGACCTCTCCAGGACT--
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47578672 63 +  50890351 AGAGGTGAGCAGAAATCGGTCCACACTGTGTCCTAGGAGGAAGCAGACGACCTCTCCAGGACT--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45934140 65 +  49145316 AGAGGTGAGCGGAACTCGGTCCACACTGTGTCTTAGGGGAAAGCAGAAGTCCTCTCCAGGATGTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20041701 65 - 122678785 AGGGGTAAGTAGAAACAAGCCCACATGGTGTCCTAGGAGGAAGGAGGAGTAGCCTCCAGGGTTTT
i canFam3.chr1              C 0 I 8
e papAnu2.chr19              47870492 192 +  51301725 M

a score=23042.000000
s hg38.chr19_GL949751v2_alt    888721 13 +   1002683 AGAAATTCAGAAg
s panTro4.chr19              59885188 13 +  63644993 AGAAATTCAGAAg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807053 13 +  60714840 AGAAATTCAGAAg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324204 13 - 106955855 AGAAATTCAGAAg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624812  8 +  64156825 -----TTCAGAAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765285  8 +  59248254 -----TTCAGAAg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47578735  8 +  50890351 -----TTCAGAAg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45934205 13 +  49145316 AGGAATTCAGAAG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041766  8 - 122678785 I
e papAnu2.chr19              47870492 192 +  51301725 M

a score=83506.000000
s hg38.chr19_GL949751v2_alt    888734 46 +   1002683 gccaggcgcgctggctcacgcctgtcgtcccagccctttgggaggc
s panTro4.chr19              59885201 46 +  63644993 gccaggggcgctggctcatgcctgtcgtcccagcactttgggaggc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807066 46 +  60714840 gccaggcgtgctggctcacgcctgtcatcccagcactttgggaggc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324217 46 - 106955855 gccaggcacgctcgctcacgcctgtcatcccagcactttgggaggc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624820 46 +  64156825 gccaggcgcactggctcacgcctgtcatcccagcactttgggaggc
i rheMac3.chr19             C 0 I 19
s macFas5.chr19              55765293 46 +  59248254 gccaggcgcactggctgacgcctgtcatcccagcactttgggaggc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47578743 46 +  50890351 gccaggcgcactggctcacgcctgtcatcccagcactttgggaggc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041766  8 - 122678785 I
e calJac3.chr22              45934218  0 +  49145316 C
e papAnu2.chr19              47870492 192 +  51301725 M

a score=104210.000000
s hg38.chr19_GL949751v2_alt    888780 93 +   1002683 tgaggcggttggaccacctgagggtcaggagtttgagaccag-cctgaccaacatggtgatgaaacagcatctctactaaaaatacaaaaattt
s panTro4.chr19              59885247 90 +  63644993 tgaggcggttggaccacctgagggtcaggagtttgagaccag-cctgaccaacatgg---tgaaacagcatctctactaaaaatacaaaaattc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807112 91 +  60714840 cgaggtggttggatcacctgagggtcaggagtttgagaccagccctgaccaacatgg---tgaaacagcatctctactaaaaatacaaaaatta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324263 90 - 106955855 cgaggcggttggatcacctgagggtcaggagtttgagaccag-cctgaccaacatgg---tgaaacagcatctctactaaaaatacaaaaatta
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55765339 89 +  59248254 caacttgggtggatcacctga-ggtcaggagtttgaaaccag-cctgaccaacatga---tgaaaccgcatctctactaaaaatataaaaatta
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47578789 89 +  50890351 cgacttgggtggatcacctga-ggtcaggagtttgaaaccag-cctgaccaacatgg---tgaaaccgcatctctactaaaaatataaaaatta
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041766  8 - 122678785 I
e calJac3.chr22              45934218  0 +  49145316 C
e papAnu2.chr19              47870492 192 +  51301725 M
e rheMac3.chr19              60624866 19 +  64156825 I

a score=93606.000000
s hg38.chr19_GL949751v2_alt    888873 55 +   1002683 gctggacgtggtggcagacacctgtaatcccagctactccgggaggctgaggcag
s panTro4.chr19              59885337 55 +  63644993 gctggacgtggtggcagacacctgtaatcccagctactccgggaggctgaggcag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807203 54 +  60714840 gctggttgtggtggcagacacctgtaatccccgctact-cgggaggctgaggcag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324353 54 - 106955855 gctgggcgtggtggcagacacctgtaatcccagctact-tgggaggcggaggcag
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55765428 54 +  59248254 gccaagcgtggtggcagacacctgtaatcccagctact-cgggaggctgaggcag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870686 54 +  51301725 gccgagcgtggtggcagacacatgtaatcccagctact-cgggaggctgaggcag
i papAnu2.chr19             M 192 C 0
s chlSab2.chr6               47578878 54 +  50890351 gccgggcgtggtggcagacacctgtaatcccagctact-caggaggctgaggcag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041766  8 - 122678785 I
e calJac3.chr22              45934218  0 +  49145316 C
e rheMac3.chr19              60624866 19 +  64156825 I

a score=199493.000000
s hg38.chr19_GL949751v2_alt    888928 103 +   1002683 gagaatcacttaaatctaggaggcgggggttgctatgagccgagatcacgccattgcaccccagcctgggcaacaagagc-aaaattctgtctc--aaaaaaaaaa
s panTro4.chr19              59885392 105 +  63644993 gagaatcacttaaatccaggaggcgggggttgctatgagccgagatcacgccattgcaccccagcctgggcaacaagagc-aaaattctgtctcaaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807257 101 +  60714840 gagaatcacttaaatccaggaggcaggggttgctatgagccgagatcacgccattgcaccccagcctgggcaacaagagcaaaaattctgtctc-----aaaaaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324407 102 - 106955855 gagaatcacttaaacccaggaggcgggggttgctatgagctgagatcacgccattgcaccccagcctgggcaacaagagc-aaaattccatctc---aaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624885  96 +  64156825 gagaatcccttgaacccaggaggtggaggttgcagtgagccgagatcacgccattgcactccagcctgggcaac--gagc-aaaactcggtctc-------aaaaa
i rheMac3.chr19             I 19 C 0
s macFas5.chr19              55765482  96 +  59248254 gagaatcccttgaacccaggaggtggaggttgcagtgagccgagatcacgccattgcactccagcctgggcaac--gggc-aaaactcggtctc-------aaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870740  96 +  51301725 gaggatcccttgaacctgggaggcggaggttgctgtgaaccaagatcacgccactgcactccagcctgggcaac--gagc-aaaactccgtctc-------aaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47578932  96 +  50890351 gagaatcccttgaacccaggagatggaggttgctgtgagctgagatcacgccactgtactctagcctgggcaac--gagc-aaaacttggtctc-------aaaaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041766   8 - 122678785 I
e calJac3.chr22              45934218   0 +  49145316 C

a score=12245.000000
s hg38.chr19_GL949751v2_alt    889031 5 +   1002683 agaaa
s panTro4.chr19              59885497 5 +  63644993 agaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807358 5 +  60714840 aaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324509 5 - 106955855 aaaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624981 5 +  64156825 agaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765578 5 +  59248254 agaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870836 5 +  51301725 agaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47579028 5 +  50890351 agaaa
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20041774 5 - 122678785 AGGCA
i canFam3.chr1              I 8 C 0
e calJac3.chr22              45934218 0 +  49145316 C

a score=258319.000000
s hg38.chr19_GL949751v2_alt    889036 81 +   1002683 TGGCATTGAGGCTTGGAGAGGGACTGCTTGTTCTGAATGCAGGTGCTGGATCTTCATAAACCCTGGTGTCTGTCCTGGTCC
s panTro4.chr19              59885502 81 +  63644993 TGGCATTGAGGCTTGGAGAGGGACTGCTTGTTCTGAACGCAGGTGCTGGATCTTCATAAACCCTGGTGTCTGTCCTGGTCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807363 81 +  60714840 TGGCATTGAGGCTTGGAGAGGGACTGCTTGTTCTGAACACAGGTGCTGGATCTTCATAAACCCTGGTGTCTGTCCTGGTCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324514 81 - 106955855 CGGCATTGAGGCTTGGAGAGGGACTGCTTGTTCTGAACACAGGTGCTGGATCGTCATAAACCCTGGTGTCTGTCCTGGTCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60624986 81 +  64156825 TGGCATTGAGGCTTAGAGAGGGACTGCTTGTTCTGAATACAGGTGCTAGATCTTCATCAACTCTGGTGTCTGTCCTGGTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765583 81 +  59248254 TAGCATTGAGGCTTAGAGAGGGACTGCTTGTTCTGAATACAGGTGCTAGATCTTCATCAACTCTGGTGGCTGTCCTGGTCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870841 80 +  51301725 tggcaTTGAGGC-TAGAGAGGGACGGCTTGTTCTGAACGCAGGTGCTAGATCTTCATCAACTCTGGTGTCTGTCCTGGTCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47579033 81 +  50890351 TGGCATTGAGGCTTAGAGAGGGACTGCTTGTTCGTAACACAGGTGCTAGATCTTCATCAACTCTGGTGTCTGTCCTGGTCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45934218 81 +  49145316 TGGCATTAAGGCTTAGCGAGAGCCTGCCTGTCCTGAACACAGATGCCAGATCTTCATAAACTCTGATGTCTGTCCTGGTCC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20041779 71 - 122678785 TAACATTGAACCCTGAAGAGG--CCACCTGTCCTGAACCCAAATGCTAGACCTTCATAAAGTCTAGTGG-TGTC-------
i canFam3.chr1              C 0 C 0

a score=2044.000000
s hg38.chr19_GL949751v2_alt    889117 8 +   1002683 TTATTTTC
s chlSab2.chr6               47579114 8 +  50890351 TTATTTTC
i chlSab2.chr6              C 0 I 6
s calJac3.chr22              45934299 8 +  49145316 TTACTATC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20041850 8 - 122678785 TTCCATTC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56807444 0 +  60714840 C
e nomLeu3.chr10             103324595 0 - 106955855 C
e papAnu2.chr19              47870921 0 +  51301725 C
e macFas5.chr19              55765664 0 +  59248254 C
e rheMac3.chr19              60625067 0 +  64156825 C
e panTro4.chr19              59885583 0 +  63644993 C

a score=2198.000000
s hg38.chr19_GL949751v2_alt    889125 22 +   1002683 TACCTACttctttttttttttt
s calJac3.chr22              45934307 22 +  49145316 TACCTAttttttgttttgtttt
i calJac3.chr22             C 0 I 796
s canFam3.chr1               20041858 22 - 122678785 TAGCTATTTCTACTCTGTCCTG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56807444  0 +  60714840 C
e nomLeu3.chr10             103324595  0 - 106955855 C
e chlSab2.chr6               47579122  6 +  50890351 I
e papAnu2.chr19              47870921  0 +  51301725 C
e macFas5.chr19              55765664  0 +  59248254 C
e rheMac3.chr19              60625067  0 +  64156825 C
e panTro4.chr19              59885583  0 +  63644993 C

a score=227.000000
s hg38.chr19_GL949751v2_alt    889147 7 +   1002683 tttttgt
s canFam3.chr1               20041880 7 - 122678785 GTATTGT
i canFam3.chr1              C 0 I 933
e ponAbe2.chr19              56807444 0 +  60714840 C
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103324595 0 - 106955855 C
e chlSab2.chr6               47579122 6 +  50890351 I
e papAnu2.chr19              47870921 0 +  51301725 C
e macFas5.chr19              55765664 0 +  59248254 C
e rheMac3.chr19              60625067 0 +  64156825 C
e panTro4.chr19              59885583 0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt    889154 899 +   1002683 ccttttatttttttattttttattttattattAttattttttttattatactttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctccccccaccccaccacagtccccagagtgtgatgttccccttcctgtgtccatgtgatctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgtgatagtttactgagaatgatggtttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcattgtattccatggtatatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgctgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcatttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatccccacaccgacttccacaatggttgaactagtttacagtcccaccaacagtgtgaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtcgttcgcccactttttgatggggttgtttgtttttttcttgtaaa
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56807444   0 +  60714840 C
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103324595   0 - 106955855 C
e chlSab2.chr6               47579122   6 +  50890351 I
e papAnu2.chr19              47870921   0 +  51301725 C
e macFas5.chr19              55765664   0 +  59248254 C
e rheMac3.chr19              60625067   0 +  64156825 C
e panTro4.chr19              59885583   0 +  63644993 C

a score=23180.000000
s hg38.chr19_GL949751v2_alt    890053 14 +   1002683 ttATTTTCTACCTA
s panTro4.chr19              59885583 14 +  63644993 TTATTTTCTACCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807444 14 +  60714840 TTATTTTCTACCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324595 14 - 106955855 TTATTTTCTACCTG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60625067 14 +  64156825 TTATTTTCAACCTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765664 14 +  59248254 TTATTTTCGACCTG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870921 14 +  51301725 TTATTTTCGACCTG
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e chlSab2.chr6               47579122  6 +  50890351 I

a score=162032.000000
s hg38.chr19_GL949751v2_alt    890067 72 +   1002683 TTTCTATCGCTTTCAGGTATCGTACAGTTGGCCTAACATATCTGTGGATTTAACCAATCCTAGATCAAAAAT
s panTro4.chr19              59885597 72 +  63644993 TTTCTATCGCTTTCAGGTATCGTACAGTTGGCCTAACATATCTGTGGATTTAACCAATCCTAGATCAAAAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807458 72 +  60714840 TTTCTATCCCTTTCAGGTATCGTACAGTTGGCCTAACATATCTGTGGATTTAACCAATCCTAGATCAAAAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103324609 72 - 106955855 TTTCTATCCCTTTCAGGTATCGTACAGTTGGCCTAACATATCTGTGGACTTAACTAATCCTAGATCAAAAAT
i nomLeu3.chr10             C 0 M 692
s rheMac3.chr19              60625081 72 +  64156825 TTTCTATCCCTTTCAGGGATCGTACCGTTGGCCTGACATATCTGTGGATTTAACCAATCCCAGATCAAAAAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765678 72 +  59248254 TTTCTATCCCTTTCAGGGATCATACCGTTGGCCTGACATATCTGTGGATTTAACCAATCCCAGATCAAAAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47870935 72 +  51301725 TTTCTATCCCTTTCAGGGATCGTACCGTTGGCCTGACATATCTGTGGATTTATACAATCCCAGATCAAAAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47579128 70 +  50890351 TTTCTGTCCCTTTCAGGGATCATACCATTGGCCTGATATATC--TGGATTTCACCAATCCCAGATCAAAAAT
i chlSab2.chr6              I 6 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I

a score=343871.000000
s hg38.chr19_GL949751v2_alt    890139 225 +   1002683 AATGGGGGCAAAGACAATTAAAAATAACAATACAATAAAATGCACATGAACTATGGTTATTTAACTCttcttgagagaggatctcactctgtcacccaggctggaatttagcagcacgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagccgggattacaagcatgtcccaccatgcctggctga----tttt
s panTro4.chr19              59885669 225 +  63644993 AATGGGGGCAAAGACAATTAAAAATAACAATACAATAAAATGCACATGAACTATGGTTATTTAACtcttcttgagagaggatctcactctgtcacccaggctggaatttagcggcacgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcggcctcccgagtagccgggattacaagcatgtcccaccacgcctggctga----tttt
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807530 225 +  60714840 AATGGGGGCGAAGACAATTAAAAATAACAATACAATAAAATGCACATGAACTATGGTTATTTAACTCttcttgagagaggatctcactctgtcgcccaggctggaatttagtggcacgatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagccgggattacaagcatgtcccaccacgcctggctga----tttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60625153 213 +  64156825 AATGGGGGCAAAGACAATTAAAAAT-----TACAATAAAATGCACATGAACTGTGGttattt---ctctcttgagagaggatctcgctctgtcacccaggctggggtgcagtggcatgatctcggctcactgcagcctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagccagaattacaagcacgtcccaccatgcctggctga--------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765750 213 +  59248254 AATGGGGGCAAAGACAATTAAAAAT-----TACAATAAGATGCACATGAACTGTGGttattt---ctctcttgagagaggatctcgctctgtcacccaggctggggtgcagtggcatgatctcggctcactgcagcctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagccagaattacaagcacgtcccaccatgcctggctga--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871007 213 +  51301725 AATGGGCGCAAAGACAATTAAAAAT-----GACCATAAAATGCACATGAACTGTGGTCATTT---CTCTCTTGagagaggatcttgctctgtcacccaggctggggtgcagtggcatgatctcagctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagccaggattacaggcacgtcccaccacgcctggctga--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47579198 186 +  50890351 AATGGGGGCAAAGACAGTTAAAAAT-----TACAATAAAATGCACATGAACTGTGGTTATTT---CTCTCTTGAGAGAGGATCTCGCTCTGTCACCcag-------------------------------tgcaacctctgcctcctgggttcaagcgattctcctgccttagcctcccgagtagccagaattacaggcacgtcccaccatgcctggctgatttt----
i chlSab2.chr6              C 0 I 338
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103324681 692 - 106955855 M

a score=1890.000000
s hg38.chr19_GL949751v2_alt    890364 13 +   1002683 ttttttttttttt-
s panTro4.chr19              59885894 13 +  63644993 ttttttttttttt-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807755 13 +  60714840 ttttttttttttt-
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60625366  5 +  64156825 ---------tttta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765963  5 +  59248254 ---------tttta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871220  5 +  51301725 ---------tttta
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103324681 692 - 106955855 M
e chlSab2.chr6               47579384 338 +  50890351 I

a score=189888.000000
s hg38.chr19_GL949751v2_alt    890377 114 +   1002683 ttt-------gtattctaaatagagatggggtttcaccatgttagccaggatagtctcgatgtcgtgacctcatgatctgcccgcctcggcctcccaaagtgttgggattacaggcgtgag
s panTro4.chr19              59885907 111 +  63644993 ----------gtattttaaatagagatggggtttcaccatgttagccaggatagtctcgatgtcgtgacctcatgatctgcccgcctcggcctcccaaagtgttgggattacaggcgtgag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807768 121 +  60714840 tttttttttggtattttaaatagagatggggtttcaccatgttagccaggatagtctcgatgtcctgacctcgtgatctgcccacctcggcatcccaaagtgttgggattacaggcgtgag
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60625371 112 +  64156825 ttt-------gtgttttaaatacagatggggtttcaccatgttagccaggatagtctc--tgtcctgacctcgtgatctgcctactttggcctcccaaaatgttgacattacaggcgtgag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55765968 112 +  59248254 ttt-------gtgttttaaatacagatggggtttcaccatgttagccaggatagtctc--tgtcctgacctcgtgatctgcctactttggcctcccaaaatgttgagattacaggcgtgag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871225 114 +  51301725 ttt-------gtattttaaatagagatggggttttaccatgttagccaggatagtctcgatgtcctgacctcgtgatctgcccactttggcctcccaaaatgttgggattacaggcgtgag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47579722 112 +  50890351 ttt-------gtgttttaaatagagattgagtttcaccatgttagccaggatagtctc--tatcctgacctcgtgatctgcccgctttggcctcccaaaatgttgagatgacaggcgtgag
i chlSab2.chr6              I 338 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103324681 692 - 106955855 M

a score=578072.000000
s hg38.chr19_GL949751v2_alt    890491 272 +   1002683 ccaccgcacccagccAGCAAGTGCATTTAGAACTACTCT--ACTTTCTACCCCATAACt----------ttt--------ttttttgtttgtttgagacaagtctcactctgtcacccaggatggagtgcagcagcacaatctcagcttattgcaactcccg-ccccctgggttcaagtgtttctcctgcatcagcctcttgaatagctaggattatacaggcacctgccactgtgcctggctaaattttgtattttaata-------------gagatggggtttcacta-tgttggccaggctgg
s panTro4.chr19              59886018 272 +  63644993 ccaccgcacccagccAGCAAGTGCATTTAGAACTACTCT--ACTTTCTACCCCATAACt----------ttt--------ttttttgtttgtttgagacaagtctcactctgtcacccaggatggagtgcagcagcacaatctcagcttattgcaactcccg-ctccctgggttcaagcgattctcctgcatcagcctcttgaatagctaggattatacaggcacctgccactgagcctggctaaattttgtattttaata-------------gagatggggtttcacta-tgttggccaggctgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56807889 283 +  60714840 ccaccgcacccagccAGCAAGTGCATTTAAAACAACTCT--ACTTTCTACCCCATAACtttttttacacttt--------ttttttgtttgtttgagacaagtctcactctgtcacccaggatggagtacagtggcacaatctcagcttattgcaactcccacccccccgggttcaagcgattctcctgcatcagcctcttgaatagctagggttatacaggcacctgccactgcgcctggctaaattttgtattttaata-------------gagatggggtttcacta-tgtcggccaggctgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103325373 294 - 106955855 CCACTGCACCCAGCTAGCAAGTGCATTTAAAACAACTCTAAACTTTCTACCCCATAACt----------tttttttacgcttttttttttgtttgagacaagtctcactctgtcgcccaggatggagtgcagtggcacaatctcagcttattgcaactcccg-ccccccgggttcaagcgattctcctgcatcagcctcttgagtagctgggattatacaggcacctgccactgcgcctggctaaattttgtttttttgtgtttttttttttttgaga--gagtttcactcttgttgcccaggctgg
i nomLeu3.chr10             M 692 I 48
s rheMac3.chr19              60625483 271 +  64156825 ccactgcacccagccAGCTAGTGCATTTAAAACAACTCT--ACTTTCTACCCCACAACT----------TTATTTTACA-Ctttttgtttgtttgagacgagtctcactctgtcgtacaggatggagtgcagtggcgcaatctcagttca--------tctg-ccccccgggttccagcgattctcctgcatcagcctcctgagtagctgggattatacaggcacctgccactgtgcctggctaaattttgtattttaata-------------gagacgggatttcacta-tgttggacaggctgc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766080 271 +  59248254 ccactgcacccagccAGCTAGTGCATTTAAAACAACTCT--ACTTTGTACCCCACAACT----------TTATTTTACA-Ctttttgtttgtttgagacgagtctcactctgtcgtgcaggatggagtgcagtggcacaatctcagttca--------tctg-ccccctgggttccagcgattctcctgcatcagcctcctgagtagctgggattatacaggcacctgccactgtgcctggctaaattttgtattttaata-------------gagacgggatttcacta-tgttggacaggctgc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871339 279 +  51301725 ccaccgcacccagccagctaGTGCATTTAAAACAACTCC--ACTTTCTACCCCATAAct----------ttattttaca-ctttttgtttgtttgaaacaagtctcactctgtcatgcaggatggagtgcggtggcgcaatctcagttcattgcaacctcca-ccccccgggttcaagcgattctcctgcatcggcctcctgagtagctgggattatacaggcacctgccactgtgcctggctaaattttgtattttaata-------------gagacaggatttcacta-tgttggacaggctgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47579834 278 +  50890351 ccaccgcgcccagccAGCTAGTGCGTTTAAAACAACTCT--ACTTTGTACCCCACAACT----------TTATTTCACA-C-TTTGGtttgttggagacgagtctcactctgtcaagcaggatggagtgcagtggcgcaatctcagttcgttgcatcctccg-ccccccgggttcaagtgattctcctgcatcagcctcctgagtagctgggattatacaggcacctgccactgtgcctggctaagttttgtattttaata-------------gagacgggatttcacta-tgttggacaggctgg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I

a score=27078.000000
s hg38.chr19_GL949751v2_alt    890763 15 +   1002683 tcttgaactcctgac
s panTro4.chr19              59886290 15 +  63644993 tcttgaactcctgac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808172 15 +  60714840 tcttgaaatcctgac
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60625754 15 +  64156825 tcttgaactcctgat
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766351 15 +  59248254 tcttgaactcctgat
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871618 15 +  51301725 tcttgaactcctgat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580112 15 +  50890351 tcttgaactcctgat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103325667 48 - 106955855 I

a score=351887.000000
s hg38.chr19_GL949751v2_alt    890778 187 +   1002683 cacgtgatcaacccgcctcagcctcccaatgtgctggaattacaggtgtgagccgccatgcccagcTACACtttttttt------gaaacggggtctcgttttcttgctcaggctggagtacaatggggcaatcacagctcactgcagccttgacctcccagacttgagcaatcctaccactatggcctccca
s panTro4.chr19              59886305 187 +  63644993 tatgtgatcaacccgcctcagcctcccaatgtgctggaattacaggtgtgagccaccatgcccagcTACACtttttttt------gaaacggggtctcattttcttgctcaggctggagtacaatggggcaatcacagctcactgcagccttgacctcccagacttgagcaatcctgccactatggcctccca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808187 187 +  60714840 cacgtgatcaacccgcctcagcctcccaatgtgctggaattacaggtgtgagccactatgcccagctACACtttttttt------gaaacggggtctcattttcttcctcaggctggagtacaatggggcaatcacagctcactgcagcctcgacctcccagacttgagcaatcctgccactatagcctccca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103325715 162 - 106955855 caagcgattctcctgcctcagcctccctagtagctgggattataggcatgtgccaccacgcctggctaagtttgtatttttagtagagacggtgtttctccatgttggtcaggctg-------------------------------atctcgaactcccgacctcaggtgatccgcctgcctcggcctccca
i nomLeu3.chr10             I 48 I 45
s rheMac3.chr19              60625769 185 +  64156825 tgtgtgatcaaaccgcctcagcctcccaatgtgttggaattacaggcgtgagccgcca--cCTGGCTATACTGtttttt------gaaacagggtctcgccttgtggctcaggctggagtacagtggggcaatcatagctcattgcagcctcgacctcccagactcgagcaatcctgccactatagcctccca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766366 185 +  59248254 tgcgtgatcaaaccgcctcagtctcccaatgtgttggaattacaggcgtgagccgcca--cCTGGCTATACTGtttttt------gaaacagggtctcgctttgtggctcaggctggagtacagtggggcaatcatagctcattgcagcctcgacctcccagactcgagcaatcctgccactatagcctccca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871633 185 +  51301725 tgcGTGATCAaaccgcctcagtctcccaatgtgttggaattacaggcgtgagccgcca--cctggctatactttttttt------gaaacggggtctcactttgtggctcaggctggagtacactggggcaatcacagctcactgcagcctcgacctcccagactcgaGCAATCCTGCCACCATAGCCTCCTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580127 185 +  50890351 tgcgtgatcaaaccgcctcagtctcccagtgtgttggaattacaggcgtgagccacca--cCTGGCTATACTGtttttt------gaaacggggtctcgctttgtggctcaggctggagtacagtggggcaatcacagctcactgcagcctcgacctcccagactcgagcaatcctgccactatagcctccca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I

a score=29624.000000
s hg38.chr19_GL949751v2_alt    890965 26 +   1002683 ccacacctcgctcattcttgtatata
s panTro4.chr19              59886492 26 +  63644993 ccacacctcgctcattcttgtatata
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808374 26 +  60714840 ctacacctcactgattcttgtatttt
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60625954 22 +  64156825 ccacacctcgctgatctttgta----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766551 22 +  59248254 ccacacctcgctgatctttgta----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871818 23 +  51301725 CCACGCCTCgctgatctttgtat---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580312 23 +  50890351 ccacacctcgctgatctttgtat---
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103325877 45 - 106955855 I

a score=267396.000000
s hg38.chr19_GL949751v2_alt    890991 133 +   1002683 tatatattttt-----gtagagatagggtttcaccatgttgcccaggctggtctcgaacttctgtgggctcaaccgatcctcctgccttggcttcccacagtcctgggatcagaaacatgagccacagtgcctggccA
s panTro4.chr19              59886518 135 +  63644993 ttttttttttt---ttgtagagatagggtttcaccatgttgcccaggctggtctcgaacttctgtgggctcaaccgatcctcctgccttggcttcccacagtcctgggatcagaaacatgagccacagtgcctggccA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808400 138 +  60714840 ttttttttttttttttgtagagatagggtttcaccatgttgcccaggctggtctcgaacttctgtaggctcaaccaatcctcctgccttggcttcccaaagtcctgggatcagaaacatgagccacagtgcctggccA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103325922 129 - 106955855 tttgtatttta-----atagagatggggtttcattatgttggccaggctggtcttgaactcctgaccgtgtgatcaa----cccgcctcggcttcccaatgtgctggaattacaggtgtgagccaccatgtccagcTA
i nomLeu3.chr10             I 45 I 1552
s rheMac3.chr19              60625976 129 +  64156825 ----ttttttt-----gtagagacagggtttcaccatgttgccgaggctggtctgaaactcctgtgggctcagctgatcctcctgacttggcttcccaaagtcctgggatcagaaacatgagccacagtgcctggccA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766573 129 +  59248254 ----ttttttt-----gtagagacagggtttcaccatgttgccgaggctggtctgaaactcctgtgggctcagctgatcctcctgacttggcttcccaaagtcctgggatcagaaacatgagccacagtgcctggccA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871841 129 +  51301725 ----ttttttt-----gtggagacagggtttcaccatgttgctgaggctggtctgaaactcctgtgGGCTCAGCtaatcctcctgacttggcttcccaaagtcctgggatcagaaacatgagccacagtgcctggcca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580335 129 +  50890351 ----ttttttt-----gtagagacagggtttcaccatgttgccgaggctggtctgaaactcctgtgggctcagctgatcctcctgacttggcttcccaaagtcctgggatcagaaacatgagccacagtgcctggccA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I

a score=254955.000000
s hg38.chr19_GL949751v2_alt    891124 147 +   1002683 Gtgcagctttatttacagtaaccaagatatagagtcagtctaagtgaccatcagtggatgaataaaaaat---gtgcccgttgggtaccctgcctactgcctgggttatgagattgttggg----accccaagccttaAAAAGGAAACATGGTA
s panTro4.chr19              59886653 147 +  63644993 Gtgcagctttatttacagtaaccaagatacagagtcagtctaagtgaccatcagtggatgaatagaaaat---gtgcccgttgggtaccctgcctactgcctgggttatgagattgttggg----accccaagccttaAaaaggaaacatggta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808538 147 +  60714840 Gtgcagctttatttacagtaaccaagatatagggtcagtctaagtgaccatcagtggatgaatagaaaat---gtgcctgttgggtaccctgcctactgcctgggttatgagattgttggg----accccaagcctcaAaaaggaaacatggta
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60626105 150 +  64156825 GTTcagctttatttactgttaccaagatacagagtcagtctaagtgaccatcactggataaatggaaaatgtggtgcccgttgggtacactgcctactgcctgggttacgagattattggg----accccaagcctcaAaaaggaaacatggta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766702 148 +  59248254 Gtgcagccttatttacagttaccaagatac--agtcagtctaagtgaccatcactggataaatggaaaatgtggtgcccgttgggtacactgcctactgcctgggttatgagattattggg----accccaagcctcaAaaaggaaacatggta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47871970 148 +  51301725 gtgCAGCTTTATTTACAGTTACCAAGATAG--AGTCAGTCTAAGTGACCATCACTGGATGAATGGAAAATGTGGTGCCTGTTGGGTACACTGCCTACTGCCTGGGTTATGAGATTATTGGG----ACCCCAAGcctcaaaaaggaaatatggta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580464 154 +  50890351 GtgcagctttatttacagttaccaagatacagagtcagtctaagtaaccatcactggatgaatggaaaatgtggtgcctgttgggtacactgcctactgcctgggttatgagattattgggacccaccccaagcctcaAAAAGGAAACATGGTA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45934329 796 +  49145316 I
e nomLeu3.chr10             103326051 1552 - 106955855 I

a score=534334.000000
s hg38.chr19_GL949751v2_alt    891271 252 +   1002683 ggccgggcacagtggctcacgcctgtaatcacagcactttgggaggccaaggcgggtggatcacttgaggccaggagtttgagaccagtcaggccaatgtggtgaaaccctgtctctactaaaaata-taaaaaaatcagccgggcgtggtggcacactcctgtagtcccagctacttgggaggctgaggc-aggaggattgcttgaaccagagagtcagaggttgcagtgagccaagatcgtgccactgcgct
s panTro4.chr19              59886800 250 +  63644993 ggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacttgaggccaggagtttgagaccagtcaggccaatgtggtgaaaccgtgtctctactaaaaata-taaaaaaatcagccgggcgtggtggcacactcctgtagtgccagctacttgggaggctgaggc-aggaggattgcttgaaccagagagtcag--gttgcagtgagccaagatcgtgccaatgcact
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808685 254 +  60714840 ggctgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacttgaggccaggagtttgagaccagtcaggccaatgtggtgaaaccctgtctctactaaaaatatttaaaaaattagccgggtgtggtggcacactcctgtagtctcagctacttgggaggctgaggcaaggaggattgcttgaaccagggagtcagaggttgcagtgagccaagatcgtgccactgcact
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60626255 252 +  64156825 ggctgggcacggtggctcacgcctgtaatcccatcactttaggagaccaaggcgggtggatcacttgaggccaggagtttgagagcagcctggccaacgtggggaaaccctgtctctactaaaaata-caaaaaaattagccaggcatggtggtgggcgcctgtagtcccagctacttgggaggctgagga-aagaggagtgctggaaccagggagttggaggttgcagtgagctgagattgtaccatttcact
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55766850 252 +  59248254 ggctgggcacggtggctcacgcctgtaatcccatcactttaggagaccaaggcgggtggatcacttgaggccaggagtttgagagcagcctggccaacgtggggaaaccctgtctctactaaaaata-caaaaaaattagccaggcatggtggtgggcgcctgtagtcccagctacttgggaggctgaggc-aagaggatcgctggaaccagggagttggaggttgcagtgagctgagattgtaccatttcact
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872118 252 +  51301725 ggctgggcacggtggctcacacctgtaatcccatcactttaggagaccaaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacgtggtgaaaccctgtctctactaaaaata-caaaaaaattatccaggcgtggtggtgggcacctgtagtcccagctacttgggaggctgaggc-aggaggatcacttgaaccagagacttggaggttgcagtgagctgagactgcaccattgcact
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580618 252 +  50890351 ggctggccacggtggctcaagcctgcaatcccatcacttcaggagaccaaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacgtggggaaaccctgtctctactaaaaata-caaaaaaattagccaggcatggtggtgggcacctgtagtcccagctacttgggaggctgaggc-aggaggatcgctggaaccagggagttggaggttgcagtgagctgagattgcaccgtttcact
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935125 248 +  49145316 ggccaggcgcagtagctcacgcctgtaaccccagcactctgggaggccgaggcaggtggatcac--aaggtcaggagttcaagaccagcctggccaagatgttgaaaccccgtctctactaaaaata-c--aaaaattagctgggcatggtggtgcatgcctgtaatcccagctactcgggaggctgaggc-aggagaatcacttgaacccgggaggcggaggctacagtgagctgagatcgtgtaactgcact
i calJac3.chr22             I 796 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e nomLeu3.chr10             103326051 1552 - 106955855 I

a score=112967.000000
s hg38.chr19_GL949751v2_alt    891523 42 +   1002683 ccagcctgggtgac--agcaagactccatctc---aaaaaaaaaaaa
s panTro4.chr19              59887050 42 +  63644993 ccagcctgggtgac--agcaagactccatctc---aaaaaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808939 42 +  60714840 ccagcctgggtgac--agcaagactccatctc---aaaaaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103327603 42 - 106955855 ccagcctgggtgac--agcaagactccatctc---aaaaaaaaaaaa
i nomLeu3.chr10             I 1552 C 0
s rheMac3.chr19              60626507 45 +  64156825 ccagcctgtgtgacggagcaagactcccactc--aaaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55767102 44 +  59248254 ccagcctgggtgacggagcaagactccctctc---aaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872370 42 +  51301725 --agcctgggtgacggagcaagactccctctc---aaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580870 47 +  50890351 ccagcctgggagacagagcgagactccctctcaaaaaaaaaaaaaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935373 44 +  49145316 ccagccttaatgacggagcaagactccatctc---aaaaaaaaaaaa
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I

a score=817.000000
s hg38.chr19_GL949751v2_alt    891565 5 +   1002683 caaa--c
s panTro4.chr19              59887092 4 +  63644993 aaaa---
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808981 5 +  60714840 aaaa--g
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103327645 7 - 106955855 aaaaaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60626552 4 +  64156825 aaaa---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55767146 4 +  59248254 aaaa---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872412 4 +  51301725 aaaa---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580917 4 +  50890351 aaaa---
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45935417 0 +  49145316 C

a score=139229.000000
s hg38.chr19_GL949751v2_alt    891570 63 +   1002683 aaaCATGGTATTAATTACACAAT-GGAATACTCCTCAACCTTAAGGAACTCCTATCTTTTTATT
s panTro4.chr19              59887096 61 +  63644993 --acatggtattaattacacaat-ggaatactcctcaaccttaaggaaatcctatcttttTATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56808986 63 +  60714840 aaacatggtattaattacacaat-ggaatactcctcaaccttaaggaaatcctatcttttTATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103327652 63 - 106955855 aAACATGGTATTAATTACATAAT-GGAATACTCCTCAAACTTAAGGAAATCCTATCGTTTTATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60626556 56 +  64156825 ----ttggtattaattacacaat-ggaatactcttcaaccttaaggaaatcctgtcttc---tg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55767150 56 +  59248254 ----ttggtattaattacacaat-ggaatactcttcaaccttaaggaaatcctgtcttc---tg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872416 56 +  51301725 ----ttgatactaattacacaat-ggaatactcttcaaCCTTAAGGAAATcctctcttc---tt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580921 57 +  50890351 ----TTGGTATTAATTACACAATGGGAATACTCTTCAACCTTAAGGAAATCCTGTCTTC---TG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22               3210275 63 -  49145316 AAACATGGTATTATTTACACCAT-GAAATACTCTTCGATCTTAAGGAAATCCTATTCAAAAATA
i calJac3.chr22             T 27878 n 0
e canFam3.chr1               20041887 933 - 122678785 I

a score=55788.000000
s hg38.chr19_GL949751v2_alt    891633 19 +   1002683 TAAAAATTGCCAGTTTTAT
s panTro4.chr19              59887157 19 +  63644993 TAAAAATTGCCAGTTTTAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809049 19 +  60714840 TAAAAATTGCCAGTTTTAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103327715 19 - 106955855 TAACAATTGCCAGTTTTAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60626612 19 +  64156825 taaaaaTTGCCAGTTTTAT
i rheMac3.chr19             C 0 I 394
s macFas5.chr19              55767206 19 +  59248254 taaaaaTTGCCAGTTTTAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872472 19 +  51301725 taaaaattgccAGTTTTAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580978 19 +  50890351 TAAAAATTGACAGTTTTAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935417 19 +  49145316 aaaaaaTTGCCGTTTTTAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I

a score=60650.000000
s hg38.chr19_GL949751v2_alt    891652 28 +   1002683 TTCAGCTAGAGATCACTTTTTAGCATAA
s panTro4.chr19              59887176 28 +  63644993 TTCAGTTAGAGATCACTTTTTAGCATAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809068 28 +  60714840 TTCAGCTAGAAATCACTTTTTAACATAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103327734 28 - 106955855 TTCAGCTAGAGATCACTTTTTAGCATAA
i nomLeu3.chr10             C 0 I 304
s macFas5.chr19              55767225 28 +  59248254 TTCAGTTGGAGATCACTTCTTAGCATAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872491 28 +  51301725 TTCAGTTGGAGATCACTTCTTAGCATAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47580997 28 +  50890351 TTCAGTTGGAGATCACCTCTTAGCATAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935436 28 +  49145316 TCCAGGTAGAGATCACTCCTTAGCGTAA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e rheMac3.chr19              60626631 394 +  64156825 I

a score=37777.000000
s hg38.chr19_GL949751v2_alt    891680 17 +   1002683 TGTTTCCTGTCTTTAAC
s panTro4.chr19              59887204 17 +  63644993 TGTTTCCTGTCTTTAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809096 17 +  60714840 TGTTTCCTGTCTTTAAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103328066 17 - 106955855 TGTTTCCTGTCTTTAAC
i nomLeu3.chr10             I 304 C 0
s macFas5.chr19              55767253 17 +  59248254 TATTTCCTATCTTTAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872519 17 +  51301725 TATTTCCTATCTTTAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47581025 17 +  50890351 TATTTTCTATCTTTAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935464 17 +  49145316 TGTTTCCTGTCTTTAAT
i calJac3.chr22             C 0 I 9
e canFam3.chr1               20041887 933 - 122678785 I
e rheMac3.chr19              60626631 394 +  64156825 I

a score=23937.000000
s hg38.chr19_GL949751v2_alt    891697 13 +   1002683 -AATGGGTGAGGGT
s panTro4.chr19              59887221 13 +  63644993 -GATGGGTGAGGGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809113 13 +  60714840 -GATGGGTGAGAGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103328083 13 - 106955855 -GATGGATGAGGGt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55767270 14 +  59248254 GGATGGGTGAGGGt
i macFas5.chr19             C 0 I 314
s papAnu2.chr19              47872536 14 +  51301725 GGATGGgtgagggt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47581042 14 +  50890351 GGATGGGTGAGGGt
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45935481  9 +  49145316 I
e rheMac3.chr19              60626631 394 +  64156825 I

a score=1903.000000
s hg38.chr19_GL949751v2_alt    891710 18 +   1002683 -------tttttttttttttttttt
s panTro4.chr19              59887234 12 +  63644993 -------tttttttttttt------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809126 14 +  60714840 -------TTTTTTGTTGTT----GT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103328096 12 - 106955855 -------ttgtttttttgg------
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55767598 18 +  59248254 ttttttcctttttttttt-------
i macFas5.chr19             I 314 C 0
s papAnu2.chr19              47872550 18 +  51301725 ttgttttttttttttttt-------
i papAnu2.chr19             C 0 I 266
s chlSab2.chr6               47581056 17 +  50890351 -ttttggttttttttttt-------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45935481  9 +  49145316 I
e rheMac3.chr19              60626631 394 +  64156825 I

a score=2251.000000
s hg38.chr19_GL949751v2_alt    891728 13 +   1002683 ggtttggtttgga
s panTro4.chr19              59887246  8 +  63644993 -----ggtttgga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809140 13 +  60714840 TGTTTGGTTTGGA
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45935481  9 +  49145316 I
e nomLeu3.chr10             103328108  0 - 106955855 C
e chlSab2.chr6               47581073  0 +  50890351 C
e papAnu2.chr19              47872568 266 +  51301725 I
e macFas5.chr19              55767616  0 +  59248254 C
e rheMac3.chr19              60626631 394 +  64156825 I

a score=3273.000000
s hg38.chr19_GL949751v2_alt    891741 12 +   1002683 ttttggtttt--gc
s panTro4.chr19              59887254 12 +  63644993 ttttggtttt--gc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809153 12 +  60714840 TTTTGGTTTT--AG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103328108 11 - 106955855 -tttggtttt--gg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55767616  6 +  59248254 ------tttttt--
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872834 10 +  51301725 ttttggtttt----
i papAnu2.chr19             I 266 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45935481  9 +  49145316 I
e chlSab2.chr6               47581073  0 +  50890351 C
e rheMac3.chr19              60626631 394 +  64156825 I

a score=50103.000000
s hg38.chr19_GL949751v2_alt    891753 22 +   1002683 ttttgagtcgaagtttcactct
s panTro4.chr19              59887266 22 +  63644993 ttttgagtcgaagtttcactct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809165 22 +  60714840 TTTTGAGACAAAGTTTCACTCT
i ponAbe2.chr19             C 0 I 756
s nomLeu3.chr10             103328119 22 - 106955855 ttttgagacgaagtttcactct
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60627025 22 +  64156825 ttttgagacgaagtttcactct
i rheMac3.chr19             I 394 C 0
s macFas5.chr19              55767622 22 +  59248254 ttttgagacgaagtttcactct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872844 21 +  51301725 -tttgagacgaagtttcactct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47581073 18 +  50890351 ----gagacgaagtttcactct
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45935481  9 +  49145316 I

a score=449109.000000
s hg38.chr19_GL949751v2_alt    891775 264 +   1002683 tgtctcccaggctagagtgcaatggcgcgatctcggctcactgtgacctcctcctcccaggtttaagtgattctcctgcctcagcctccagagtagctgggattacaggcgcctaccaccatgcccgctaatttttgtattttagtagagacagggttttaccatgttgaccagactggtctcgaactcccgacctcaggt--------------gatctgcccacctcagcctcccagagtgctgggattacaggtgtgagcaaccatgcccggccA
s panTro4.chr19              59887288 264 +  63644993 tgtctcccaggctagagtgcaatggcgcgatctcggctcactgtgacctcctcctctcaggtttaagtgattctcctgcctcagcctccagagtagctgggattacaggcgcctaccaccatgcctgctaatttttgtattttagtagagacagggttttaccatgttgaccagactggtctcgaactcccgacctcaggt--------------gatctgcccacctcagcctcccagagtgttgggattacaggtgtgagcaaccatgcccggccA
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103328141 264 - 106955855 tgtcgcccaggctagagtagaatggcacagtctcggctcactgcgacctcctcctcccgggtttaagtgattctcctgcctcagcctccagagtagctgggattacaggcgcctaccaccacgcccgctaatttttgtattttagtagagacggggtttcaccatgttgaccagactggtctcgaactaccgacctcaggt--------------gatctgcccacctcggcctcccaaagtgttgggattacaggtgtgagcaaccacgccgggccG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60627047 276 +  64156825 tgtcacccaggctagagtagaatgtcacggtctcggctcactgcaacctccgcctcccgggaaggagtggttctcctgcctcagcctcccaagcagctgggattacaggcgcctaccaccatgctcgctaatttttgtattttagtagagatggggcttcaccatgtgggccagactgatctcaaactcccgatctcaggtgatctgcccacctcgatctgcccacctcggcctccc--agtgttgggattacaggcgtgagcaaccatgcccagccA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55767644 276 +  59248254 tgtcacccaggctagagtagaatgtcacagtctcggctcactgcaacctccgcctcccgggaaggagtggttctcctgcctcagcctcccaagcagctgggattacaggcgcctaccaccatgctcgctaatttttgtattttagtagagatggggcttcaccatgtgggccagactgatctcaaactcccgatctcaggtgatctgcccacctcgatctgcccacctcggcctccc--agtgttgggattacaggcgtgagcaaccatgcccagccA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47872865 276 +  51301725 tagcgcccaggctagagtagaatgtcacggtctcggctcactgcaacctccgcctcccgggagggagcgattctcctgcctcagcctcccaagcagctgggattacaggcgcctaccaccacgctcgctaatttttgtattttagtagagatggggcttcaccatgtgggccagactgatctcaaactcccgatctcaggtgatctgcccacctcgatctgcccacctcggcctccc--agtgttgggattacaggcgtgagccaccatgcccagccg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47581091 276 +  50890351 tgtcacccaggctagagtagaatggcatggtctcggctcactgcaacctctgcctcccgggagggagtgattctcttgcctcagcctcccaagcagctgggattacaggcgcctaccaccatgctcgctaatttttgtattttagtagagatggggcttcaccatgtgggccagactgatctcaaactcccaatctcgggtgatctgctcacctcgatctgcccacctcagcctccc--agtgttgggattacaggcgtgagcaaccatgcccagccG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56809187 756 +  60714840 I
e calJac3.chr22              45935481   9 +  49145316 I

a score=132655.000000
s hg38.chr19_GL949751v2_alt    892039 62 +   1002683 AGGGTTTTTAACTTTAGCTGACCTCCGGAGGTTACAAGTTTGAAAACGGCAGGAGGAAACCC
s panTro4.chr19              59887552 62 +  63644993 AGGGTTTTTAACTTTAGCTGACCTCCGGAGGTTACAAGTTTGAAAACGGCAGGAGGAAACCC
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103328405 59 - 106955855 AGGGTTTTTAACTCTAGCTGGCCTCCGGAGGTTACAAGTTTGAAAA---CAGGAGGAAACCC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60627323 62 +  64156825 AGGGGTTTTACCTCTAGCTGGCCTCCGGATGTTACAAGTTTGAAAATAGAAGGAGGAAACCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55767920 62 +  59248254 AGGGTTTTTACCTCTAGCTGGCCTCCGGATGTTACAAGTTTGAAAATAGAAGGAGGAAACCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47873141 62 +  51301725 agggTTTTTACCTCTAGCTGGCCTCCGGAGTTTACAAGTTTGAAAATAGGAGAAGAAAACCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47581367 62 +  50890351 AGGGTTTTTACCTCTAGCTGGCCTCCAGAGGTTACAAGTTTGAAAATAGGAGGAGGAAACCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935490 62 +  49145316 AGGGTTTTTAAGTCTAGCTGGCCTCCAGAGGTCACAAATTGGAAAATAGCAGGAGAAAACCC
i calJac3.chr22             I 9 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56809187 756 +  60714840 I

a score=2305838.000000
s hg38.chr19_GL949751v2_alt    892101 872 +   1002683 AGAGAGTTGTAAACTTACGAAGGTCTGGGCTC-TGAAAAAGATACAAATTTTCTTTCCATGCCAATAGCGCTCACACAGACATGGTGAATGTTCCTGAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCACCCCCACAAAGTGACAC---------AAGGCAAGGATTCTTGGTATGCCCAGGGGAAGTAGTGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAGACTAAGCCGATTTTCCGGAAAAA-GGCT-AAAACTACAAAGAAGATTGTGCTAAGGC---TTGAGTGCCTTGAGCCCAACTGCAGATCTA--AGAATGCTGGCTATTAAAAGATACAAGCAgccaagcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggtgg--gcggatcacaaggtcaggagtctgagaccagcctggccaaaatggtgaaaccccatctctactaaaaatacaaaacttagctgggca-tggtggtgtatgcctatagtcccagctactcaggaagctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagattgtgc-----cactccagcctgggcaacagagtgacactctgtctc--------------aaaaaaaaaa------GATGCAAGCATTTTGAACTGGAAGGAGAT---AAGAGAAAGGAACAAGTGATCCAGTTCTAAGTGTCATCTT---TTCTTTTATGAAGGCAATAAAATCTTGAGCTTATGGTAAA-ATG-CAAAATTTT-------CCCCCCTTCTCCTTTTTCAGAAGCAGCTTTGAAATCCTTTAATAAAA-GGAAGCCTCTATCATTAGGTAAGTTACCTCATTTATAACTTTTATTCTTCATG-TGAGA-TCTGGGGA-CTCGGGCCTTTGTTTT----
s panTro4.chr19              59887614 880 +  63644993 AGAGAGTTGTAAACTTACGAAGGTCTGGGCTC-TGAAAAAGATGCAAATTGTCTTTCCATGCCAATAGCGCTCACACGGACATGGTGAATGTTCCTGAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCACCCCCACAAAGTGAAAC---------AAGGCAAGGATTCTTGGTATGCCCAGGGGAAGCAGTGTCATGACAGGAAGCAGAGTGGCTATGGTGGGCAGACTAAGCCGATTTTCCGGAAAAAAGGCT-AAAACTACAAAGAAGATTGTGCTAAGGC---TTGAGTGCCTTGAGCCCAACTGCAGATCTA--AGAATGCTGGCTATTAAAAGATACAAGCAgctgagcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggtgg--gcggatcacaaggttaggagtctgagaccagcctggccaaaatggtgaaaccccatctctactaaaaatacaaaacttagccaggca-tggtggtgtatgcctgtagtcccagctactcaggaagctgaggcaggagaatcgcttgaacgtgggaggcagaggttgcagtgagccaagattgtgc-----cactccagcctgggcaatagattgacactctgtctc--------------aaaaaaaaaaaaaaaagaTGCAAGCATTTTGAACTGGAAGGAGAT---AAGAGAAAGGAACAAGTGATCCAGTTCTAAGTGTCATCTT---TTTTTTTATGAAGGCAATAAAATCTTGAGCTTATGGTAAA-ATG-CAAAATTTT------TCCCCCCTTCTCCTTTTTCAGAAGCAGCCTTGAAATCGTTTAATAAAA-GGAAGCCTCTATCATTAGGTAAGTTACCTCATTTATAACTTTTATTCTTCATG-TGAGA-TCTGGGGA-CTCGGGCCTTTGTTTT----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56809943 874 +  60714840 AGAGAGTTGTAAACTTACGAGGGTCTGGGCTCTTAAAAAAAATGCAAATTTTCTTTCCATGCCGATAGCGCTCACACAAACATGGTGAATGTTCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAGCCCCACAAAGTGACAC---------AGGGCAAGGATTCTTGGTATGCCCAGGGGAAGCAGTGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAGACTAAGCCGATTTTCCAGAAAAA-GGCT-AAAACTACAAAGAAGATTGTGCTGAGGC---TTGAGTGCCTTGAGCCCAACTGCAGATCTA--AGAATGCTGCCTATTAAAAGATACAAGCagccgagcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggtgg--gcggatcacaaggtcaggagtttgagaccagcctggccaaaatggtgaaaccccatctctactaaaaatacaaaacttagccaggca-tggtggtgtatgcctgtagtcccagctactcaggaagctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgtgc-----cactccagcctgggcaacagagtgacactctgtctc--------------aaaa------------GATGCAAGCATTTTGAACTGGAAGGAGAT---AAGAGAAAGGAACAAGTGATCCAGTTCTAAGTGTCATCTT---TTCTTTTATGAAGGCAATAAAATCTTGACCTTATGTTAAA-ATGCCAAAATTTTT-----TCCCCCCTTCTCCTTTTTCAGAAGCAGCTTTGAAATCGTTAAATAAAAGGGAAGCCTCTATCATTAGGTAAGTTACCTCATTTATAACTTTTATTCTTCATGCTGAGATTCTGGGGATCTCGGGCCTTTGTTTT----
i ponAbe2.chr19             I 756 C 0
s nomLeu3.chr10             103328464 873 - 106955855 AGAGAGTTGTAAACTTACGAGGGTCTGGGCTC-TGAAAAAGATGCAAATTTTCTTTCCATGCCGATAGCGCTCACACAAACATGGTGAATGTTCCTAAAACCCGCCAGACTTTCTGTAAGAAGTGTGGCAAGCACCACCCCCACAAAGTGACAC---------AGGGCAAGGATTCTTGGTATGCCCAGGGGAAGCAGTGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAGACTAAGCCGATTTTTCGGAAAAA-AGCTAAAAACTACAAAGAAGATTGTGCTAAGGCTCATTGAGTGCCTTGAGCCCAACTGCAGATCTA--AGAATGCTGGCTATTAAAAGATACAAGCAgccgagcgtggtggcttacgcctgtaatcccaacactttgggaggccaaggtgggcgcggatcacaaggtcaggagtttgagaccagcctggccaaaatggtgaaaccctatctctactaaaaatacaaaacttagccgggcattggtggtgtatgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcagaggtagcagtgagccaagatcgagc-----cactccagcctgggtgacagagtgacactctgtctc--------------aaaaaaaaaaaa----GATGCAAGCATTTTGAACTGGAAGGAGGT---AAGAGAAAGGAACAAGTGATCCAGTTCTAAGTGTCATC--------TTTTATGAAGGCAATAAAATCTTGAGCTTATGTT-AA-ATG-CAAAATTTT------TCCCCCCTT---CTTTTTCAGAAGCAGCTTTGAAATCGTTTAATAAAA-ACAAGCCTCTATCATTAGGTAAGTTACCTCATTTACAACTTTTATTCTTCATG-TGAGA-TCTGGGGA-CTTGGGCCTTTGTTTT----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60627385 858 +  64156825 AGAGAGTTGTAAACTTACGAGGGTCTGGGCTC-TGAAAAAGATGCAGAGTTTCTTTCTGTGCCGATCGCGCTCACACAAACATGGTGAATGTTCCTAAAACCCACCGGACTTTCTGTAAGAGGTGTGGCAAGCACCATCCCCACAGAGTGACAC---------AGGGCAAGGCTT-TTGGTGTGCCCAGGGGAAGCAGTGTTACGCCAGGAAGCAGAGTGACTACGGTGGGCAGACTAAGCCAATCTTCTGGAAAAA-GGCT-AAAACTACAAAGAAGATTGTGCTAAGGC---TTGAGTGCGTTGATCCTATCTGCAGATCTA--AGGATGCTGGC---TAAAAGATACAAGCggccgggagcggtggctcatgcctgtaatcccagcattttgggaggccaaggtag--acggatcatgatgtcaggagtttgagaccagcctggccaaaatggtgaaaccccatctgtactaaaaatataaaacttagccaggca-tggtggtgcgtgcctgtagtcccagctactcaggaggctgaggcagcagaatcacttgaacctgggagacggaggttgcagtgagccaagatcttgc-----cactccagcctgggtgacagagtgaga--ctatctc---------------aaaaaaaaaaaaaaaGCTGCAAGCATTTTGAACT--GAGGATAT--------AAAAGACCAAGTGATCCAGTTCTAAGTGTTGTC--------TTTTATGAAGGTGATAAAATCTTGAGTTTATATTAAA-ATG-CAAATCTC-------CCCTCCGTTTTCCTTTTTCAGAAGCAGCTTTGAAATCATTTAATAAAC-ACAAGCCTTTATCATTAGGTAAGTTA-CTCATTTATAACTTTTATTCTTCATG-TGAGA-TTTGAGGA-CTTGGGGCTTTGTTTT----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55767982 861 +  59248254 AGAGAGTTGTAAACTTACGAGGGTCTGGGCTC-TGAAAAAGATGCAGAGTTTCTTTCTGTGCCGATCGCGCTCACACAAACATGGTGAATGTTCCTAAAACCCACCGGACTTTCTGTAAGAGGTGTGGCAAGCACCATCCCCACAGAGTGACAC---------AGGGCAAGGCTT-TTGGTGTGCCCAGGGGAAGCAGTGTTACGCCAGGAAGCAGAGTGACTACGGTGGGCAGACTAAGCCAATCTTCTGGAAAAA-GGCT-AAAACTACAAAGAAGATTGTGCTAAGGC---TTGAGTGCGTTGATCCTATCTGCAGATCTA--AGGATGCTGGC---TAAAAGATACAAGCAgccgggagcggtggctcatgcctgtaatcccagcattttgggaggccaaggtag--acggatcatgatgtcaggagtttgagaccagcctggccaaaatggtgaaaccccatctgtactaaaaatataaaacttagccaggca-tggtggtgtgtgcctgtagtcccagctactcaggaggctgaggcagcagaatcacttgaacctgggagacggaggttgcagtgagccaagatcttgc-----cactctagcctgggtgacagagtgaga--ctatctc--------------aaaaaaaaaaaaaaaaGCTGCAAGCATTTTGAACTGGGAGGATAT--------AAAAGACCAAGTGATCCAGTTCTAAGTGTTGTC--------TTTTATGAAGGTGATAAAATCTTGAGTTTATATTAAA-ATG-CAAATCTC-------CCCCCCGTTTTCCTTTTTCAGAAGCAGCTTTGAAATCATTTAATAAAA-ACAAGCCTTTATCATTAGGTAAGTTA-CTCATTTATGACTTTTATTCTTCATG-TGAGA-TTTGAGGA-CTTGGGGCTTTGTTTT----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47873203 880 +  51301725 AGAGAGTTGTAAACTTAAGAGGGTCGGGGCTC-TGAAAAAGATGCAGAGTTTCTTTCTGTGCCGATCGCGCTCACACAAACATGGTGAATGTTCCTAAAACCCGCCAGACTTTCTGT--GAGGTGTGGCAAGCACCATCCCCACAGAGTGACAC---------AGGGCAAGGATT-TTGGTGTGCCTAGGGGAAGCAGTGTTATGGCAGGAAGCAGAGTGATTATGGTGGGCAGACTAAGCCAATTTTCTGGAAAAA-ggct-aaaactacaaagaagattGTGCTAAGGC---TCGAGTGCGTTGAGCCTATCTGCAGATCTA--AGGATGCTGGC---TAAAAGATACAAgcggccaggagcggtggctcatgcctgtaatcccagcactttgggaggccaaggtag--acggatcatgatgtcaggagtttgagaccagcctggccaaaatggtgaaaccccatctgtactaaaaatataaaacttagccaggca-tggtggtgcgtgcctgtagtcccagctactcaggaggctgaggcagcagaatcgcttgaacctgggagacagaggttgcagtaagccaagatcttgc-----cactccagcctgggtgacagagtgaga--ctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatgcaagcaTTTTGAACTGGGAGGATAT--------AAAAGACCAAGTGATCCAGTTCTAAGTGTTGTC--------TTTTATGAAGGTGATAAAATCTTGAgtttatattaaa-atg-caaatctcccccccaccccccgttTTCCTTTTTCAGAGGCAGCTTTGaaatcatttaataaaa-acaagCCTTTATCATTAGGTAAGTTA-CTCATTTACGACTTTTATTCTTCATG-TGAGA-TTTGGGGA-CTTGGGGGTTTGTTTT----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47581429 855 +  50890351 AGAGAGTTGGAAACTTACGAGGGTCTGGGCTC-TGAAAAAGATGCAGAGTTTCTTTCTGTGCCGATCGCGCTCACACAAACGTGGTGAATGTTCCTAAACCCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCGCCATCCCCACAGAGTGACAC---------AGGGCAAGGATT-TTGGTATGCCCAGGGGAAGCAGTGTTAGGGCAGGAAGCAGAGTGACTACGGTGGGCAGACTAAGCCAGTTTTCTGGAAAAA-GGCT-AAAACTACA---AAGATTGTGCTAAGGC---TC--GTGCGTTGAGCCTATCTGCAGATCTA--AGGATGCTGGC---TAAAAGATACAAGCggccaggcgcagtggctcacgcctgtaatcctagcactttgggaggccgaggtgg--acggatcacgaggtcaggagtttgagaccagcctggccaaaacggtgaaaccccatctgtactaaaaatacaaaacttagccacgca-tggtggtgcatgcctgtagtcccagctactcaggaggctgaggcagcagaatcgcttgaacctgggagacggaggttgcagtgagccaagatcttgc-----cactctagcctgggtgaca----gaga--ctgtctc--------------aaaaaaaaaaaaaaaaGATGCAAGCATTTTAAAATGGGAGGAGAT--------AAAAGACCAAGTGATCCAGTTCTAAGTGTTGTC--------TTTTATGAAGGCAATAAAATCTTGAGTTTATATTAAA-ATG-CAAATCCCCCC----CCCCCCATTTTCCTTTTTCAGAAGCAGCTTTGAAATCATTTAATAAAA-ACAAGCCTTTATCATTAGGTAAGTTA-CTCATTTACGACTTTTATTCTTCATG-TGAGA-TTTGGGGA-GTTGGGGCTTTGTTTT----
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45935552 906 +  49145316 AGAGAGTCGTACACTTACGAGGGGCTGGGCTC-TTAAAAAGATGCAGATTTTCTTTCCGGGCCAATAGTGCCCATGCAAACACAGTGAATGTTCCCAAAAGCCACCAGACTTTCTGTAAGAAGTGTGGCAAGCAGCAATCCCACGAAATGGCACAGTACGAGAAGGGCAGGGATTCTC--TATGCCCAGGGAAAGCGGTGTTACGACAGACAGCAGAGTGGCTATAGTGGGCAGCGTACGCCGATTTTCCGAAAAAA-GGCT-AAAAATACA---AAGACTGTGCTAAGGT---TTGGCTGCGTGGAGCCCCACTGCAGATCTAAGAGAATGCTGGCTGTTAAAAGATGCAAGCggccgggcgcggtggctcacgcctgtaatcccagcactttaggaggccgaggcgg--gtggatcgcgaggtcaggagttcaagaccagcctggccaagatgttgaaaccccgtctctactaaaaatacaaaaattagctgggcg-cggtggcatgtgcccgtaatcctacctactcaggaggctgaggcaggagaattgcctgaacctgggaggtggaggttacagtgagctgagattgtgccattgcactccagcctgggtgactgagtaagactcggtctc-------aaaaaaaaaaaaaaaaaaaaaaagaTGCAAGCATTTTCAACTGGGAGCAGGTAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTGAGTGTCATCTTTTATTTTATTATGAAGACAATAAAATCTTGCGTTTCTTTTAAACATG-TAAATTT--------CTCCCCCTTTTTCTTTTTCAGAAGCAGCTTTGAGATCATTTAATAAAA-ACAAGCCTCTACCATTAGGTAAATTACCTCATTGACAACTATTATTCTTCATG-TGAGG-TTTGGGGA-CTGAGGGCTGCTtttttttt
i calJac3.chr22             C 0 I 2503
e canFam3.chr1               20041887 933 - 122678785 I

a score=49894.000000
s hg38.chr19_GL949751v2_alt    892973 29 +   1002683 AAGGAGAATG--TGCTGAGCACTAAGAATGC
s panTro4.chr19              59888494 29 +  63644993 AAGGAGAATG--TGCTGAGCACTAAGAATGC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56810817 29 +  60714840 AAGGAGAATG--TGCCGAGCACTAAGAATGC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103329337 29 - 106955855 AAGGAGAATG--TGCTGAGCACTAAGAATGC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60628243 29 +  64156825 AAGAAGAGGC--TGCTGACTACTAAGAATGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55768843 29 +  59248254 AAGAAGAGGC--TGCTGACTACTAAGAATGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47874083 31 +  51301725 AAGAAGAGACTGTGCTGACTACTAAGAATGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47582284 31 +  50890351 AAGAAGAGACAGTGCTGTCTACTAAGAATGT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45936458 2503 +  49145316 I

a score=864378.000000
s hg38.chr19_GL949751v2_alt    893002 302 +   1002683 AAAGAAATGCCGGACTTAGCATCCCTGCTCCCAGGGCGGAGCTGGTCTCGCAGGTGCGTAGCAGTAAGACCTGGGAAGCTGAAACACGATCGCGTTTGTTGGAAATCTATAAATACATACAAAGCGGGGAAGGGTAAGCTTGGCCTTTGAATCTGGATAAGGTAGAGAC-ttttcttttttgagatggaggcttgctctgtcacctaggctgaagtgcagtggtacgacctcggctgactgcaacctctacctcctgggttcaagcagttctcctgcctcagcctctagaatagctgggatta
s panTro4.chr19              59888523 302 +  63644993 AAAGAAATGCCGGACTTAGCATCCCTGCTCCCAGGGCGGAGCTGGTCACACAGGTGCGTAGCAGTAAGACCTGGGAAGCTGAAACACGATCGCGTTTGTTGGAAATCTATAAATACATACAAAGCGGGGAAGGGTAAGCTTGGCCTTTGAATCTGGATAAGCTAGAGAC-ttttcttttttgagatggaggcttgctctgtcacctaggctgaagtgcagtggtacgacctcggctgactgcaacttccacctcctgggttcaagcagttctcctgcctcagccttgggaatagctgggatta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56810846 301 +  60714840 AAAGAAATGCCGGACTTCGCATCCCTTCTCCCAGGGCGGACCTGGTCACGCAGGTGCATAGCAGTAAGACCTGGGAAGCTGAAACACGATAGCGTTTGTTGAAAATCTATAAATACATACAAAGCGGGGAAGGGTAAGCTTGGCCTTTGAATCTGGATAAGCTAGAGAC--tttcttttttgagatggaggcttgctctgtcacctaggctgaagtgcagtggtacgacctcggctgactgcaacctccacctcccgggttcaagcagttctcctgcctcagcctctggagtagctgggatta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103329366 302 - 106955855 AAAGAAGTGCCGGACTTCGCACCCCTGCTTCCAGGGCGGAGCTGGTCATGCAGGTGCATAGCAGTAAGACCTGGGAAGCTGAAACACGATAGCGTTTGTTGGAAATCTATAAATACATACAAAGCAGGGAAGGGTAAGCTTGGCCTTTGAATCTGGATAAGCTAGAGAC-TTTGGttttttgagatggaggcttgctctgtcgcctaggctgaagtgcagtgatatgacctcggctgactgcaacctccacctcccgggttcaagcagttctcctgcttcagcctctggagtagctgggatta
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60628272 300 +  64156825 AAAGAAATGCCGGACTTCTCATCCCTGCTCCCAGGACGGAGCCGGTCACACAGGTGGGTAGCAGTAAGCCCTGGGAAGCTGAAACACGATAGCATTTGTTGGAAATCTATAAATACATACAAAGTGGGGAAGGGTAAGCTTGGCCTTTGAAAGTGGATAAGCTAGAGAC---ttcttttttgagatggagccttgctctgtcgcctaggctggagtgcagtggcacaatctcagctgactgcaacctccgcctcccggcttcaagcaattctcctgcctcagcctctggagtagctgggatta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55768872 300 +  59248254 AAAGAAATGCCGGACTTCTCATCCCTGCTCCCAGGACGGAGCCGGTCACACAGGTGGGTAGCAGTAAGCCCTGGGAAGCTGAAACACGATAGCATTTGTTGGAAATCTATAAATACATACAAAGTGGGGAAGGGTAAGCTTGGCCTTTGAAAGTGGATAAGCTAGAGAC---ttcttttttgagatggagccttgctctgtcgcctaggctggagtgcagtggcacaatctcagctgactgcaacctccgcctcccagcttcaagcaattctcctgcctcagcctctggagtagctgggatta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47874114 302 +  51301725 AAAGAAATGCCGGACTTCTCATCCCTGCTCCCAGGACGGAGCCGGTCACACAGGTGGGTAGCAGTAAGCCCTGGGAAGCTGAAACACGGTAGCATTTGTTGGAaatctataaatacatacaaagtgGGGAAGGGTAAGCTTGGCCTTTGAAACTGGATAAGCtagagac-ttttcttttttgagatggagtcttgctctgtcgcctaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctctggagtagctgggatta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47582315 302 +  50890351 AAAGAAATGCCGGACTTCTCATCCCTGCTCCCAGGATGGAGCCGGTCACACAGGTGGGTAGCAGTAAGCCCTGGGAAGCTGAAACACGATAGTATTTGTTGGAAATCTATAAATACATACAAAGTGGGGAAGGGTAAGCTTGGCCTTTGAAACTGGATAAGCTAGAGAC-ttttcttttttgagatggagtcttgctctgtcacctaggctaaagtgcagtggcacaatctcggctcactgcaacctccgcctcccgggttcaagcagttctcctgcctcagcctctggagtagctgggatta
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45938961 303 +  49145316 aaagaaaTCCCAGCGTTCTCATCCCTGCTCCCAGGGAGGAGCTGGTTATGCAGGTGGAGAGCAGTAAGACCTGGGAAGCTGAAACACGATAGTATTTGTTGGAAACTGGTACATACATACCCAGTAGGGAAGGATAAGCTTGGCCTTTCAATATGGATAAGCTAGAGACtttttcttttttgagatggagtctggctctgttgcctaggctggagtgcagtggtgcaatcatggttcactgcagccttgacctcccaggctcaggtgatcctcctgcctcagcctcccaaagtgctggggtca
i calJac3.chr22             I 2503 I 1
e canFam3.chr1               20041887 933 - 122678785 I

a score=301963.000000
s hg38.chr19_GL949751v2_alt    893304 136 +   1002683 caggtacctgccaccaggcccggctaattttttgtggtgtt----------tgtagagatggggtttcaccatgatggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcagcgtcccaaaatgctgggatta
s panTro4.chr19              59888825 135 +  63644993 caggtgcctgccaccaggcccggctaattttttgtggtttt----------tgtagagatggggtttcaccatgatggccaggctggtcttgaactc-tgacttcaagtgatctgcccacctcagcgtcccaaaatgctgggatta
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56811147 136 +  60714840 caggtgcctgccaccaggcccggctaattttttgtggtttt----------tgtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcagtgtcccaaaatgctgggatta
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103329668 134 - 106955855 cgggtgccggtcaccaggcctggctaattttttgtggtttt----------tgtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgccca-ctcagtgtccc-aaatgctgagatta
i nomLeu3.chr10             C 0 T 64436
s rheMac3.chr19              60628572 146 +  64156825 caggcacccaccaccaggcctggctagatttttgtggtttttatagagatgtatagagatggggtttcactatgttggccgggctggtcttgaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctggaattg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55769172 146 +  59248254 caggcacccaccaccaggcctggctagatttttgtggtttttatagagatgtatagagatggggtttcactatgttggccgggctggtcttgaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctggaattg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47874416 136 +  51301725 caggcacccaccaccaggcctggctagatttttgtggtttt----------tatagagatggggtttcactatgttggccaggctggtcttgaactcctaacctcaagtgatctgcccacctcagcctcccaaagtgctggaattg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47582617 136 +  50890351 caggcacccaccaccaggcctggctagatttttgtggtttt----------tatagagatgaggtttcactatgttggccaggctggtcttgaactcctaacctcaagtgatctgcccacctcagcctcccaaaatgttggaattg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45939264   1 +  49145316 I

a score=334363.000000
s hg38.chr19_GL949751v2_alt    893440 237 +   1002683 tgggc----atgagccaccacCACACCCGGttttgttttttttttttttttttttttt-----------ttttttttttttttgaaacagggcttcactctgtcacttaggctggagtg-----gtgcaatcatggttcactgcagccttgacctcccaagctctggtgatcctcctgcctcagcctcctgagtagctgggaccacaggcacttgccaccatgcctggctaatttttttcactttttgtagagacag
s panTro4.chr19              59888960 224 +  63644993 taggc----atgagcaaccaccacacccggcttt------------------tttttt-----------ttttttttttttttgaaacagggcttcactctgtcacttaggctggagtgcagtggtacaatcatggttcactgcagccttgacctcccaagctctggttatcctcctgcctcagcctcctgagtagctgggaccacaggcacttgccaccatgcctggctaatttttttcactttttgtagagacag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56811283 221 +  60714840 taggc----gtgagtcaccCCCACACCTGAC---------------------tttttt-----------ttgttttgttttttgaaacagggcttcactctgtcacttaggctggagtgcagtggtgcaatcatggctcactgcagccttgacctcccaggctctggtgatcctcctgcctcagcctcctgagtagctgggaccacaggcacctgccatcacgcctggctaatttttttcactttttgtagagacag
i ponAbe2.chr19             C 0 T 90216
s rheMac3.chr19              60628718 213 +  64156825 taggtgtgagtgagtta---ccacacctggc---------------------ttttct-------------------gtttttgaaacgggacttcactctgtcacttaggctggagtgcagtggtgcaatcatggctcactgcagccctgaccacccaggcttaggcaatcctcctgcctcagcctcctgagtagctgggaccacaggcacttgccacccctcctggctaa-ttttttcactttttgtagagacag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55769318 212 +  59248254 taggtgtgagTGAGTTA---CCACACCTGGC---------------------tttttt--------------------tttttgaaacgggacttcactctgtcacttaggctggagtgcagtggtgcaatcatggctcactgcagccctgaccacccaggcttaggcaatcctcctgcctcagcctcctgagtagctgggaccacaggcacttgccaccccacctggctaa-ttttttcactttttgtagagacag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47874552 211 +  51301725 caggc----gtgagtca---ccacacctggc---------------------cttttt-----------------ttttttttgaaacaggactttgctctgtcacttaggctggagtgcagtggtgcaatcacggctcactgcagccttgaccacccaggcttaggcgatcctcctgcctcagcctcctgagtagctgggaccacaggcacttgccaccccgcctggctaa-ttttttcactttttgtagaaacag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47582753 229 +  50890351 caggg----atgagtca---ccacacctggT---------------------TGtttttttttttttttttttttttttttttgaaacaggacttcgctctgtcacttaggctggagtgcagtggtgcaatcatggctcactgcagccttgaccacccaggcttaagcgatcctcctgcctcagcctcctgagtagctgggaccacaggcacttgccacctggcctggctaatttttttcactttttgtagagacag
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45939264   1 +  49145316 I
e nomLeu3.chr10             103329802 64436 - 106955855 T

a score=111518.000000
s hg38.chr19_GL949751v2_alt    893677 85 +   1002683 ggtcttgctatgttgcccaggctggcctcgaattactaaactcaatcagtcctcctgcctcaccctcccaaactgctggggtaca
s panTro4.chr19              59889184 85 +  63644993 ggtcttgctatgttgcccaggctggtctcgaattactaaactcaatcagtcctcccgcctcaccctcccaaactgctggggtatg
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60628931 85 +  64156825 ggtcttgctatgttgcccaggctggtcttgaattactaaacttaatcagtcctcccaccttatcctcccaaagtgctggggtaca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55769530 85 +  59248254 ggtcttgctatgttgcccaggctggtctcgaattactaaacttaatcagtcctcccaccttatcctcccaaagtgctggggtaca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47874763 85 +  51301725 ggtcttgctatgttgtccaggctggtctcgaattactaagctcaatcagtcctcccacctcatcctcccaaagtgctggggtaca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47582982 85 +  50890351 ggtcttgctatgttgcccaggctggtctcgaattactaaacttaatcagtcctcccacctcatcctcccaaagtgctggggtaca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e calJac3.chr22              45939264  1 +  49145316 I
e nomLeu3.chr10             103329802 64436 - 106955855 T

a score=93204.000000
s hg38.chr19_GL949751v2_alt    893762 49 +   1002683 ggtgtgagccatgacacctggccCTTACCAGCTACTTATATCCTGAAGA
s panTro4.chr19              59889269 49 +  63644993 ggtgtgagccatgacacctggccCTTACCAGCTACTTATATCCTGAAGA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60629016 49 +  64156825 ggtgtgagccatgacacctggccCTTACCAGCTATTTATATCCTGAAGA
i rheMac3.chr19             C 0 I 2
s macFas5.chr19              55769615 49 +  59248254 ggtgtgagccatgacacctggccCTTACCAGCTATTTATATCCTGAAGA
i macFas5.chr19             C 0 I 337
s papAnu2.chr19              47874848 49 +  51301725 ggtgtgagccatgacacCTGGCCCTTACCAGCTACTTATatcctgaaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47583067 49 +  50890351 ggtgtgagccatgacccctggcTCTTACCAGCTATTTACATCCTGAAGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45939265 49 +  49145316 ggtgtgagccatgacacctggcCCTTACCAACTATTTATATCCTGAAGA
i calJac3.chr22             I 1 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e nomLeu3.chr10             103329802 64436 - 106955855 T

a score=1336.000000
s hg38.chr19_GL949751v2_alt    893811 2 +   1002683 tt
s panTro4.chr19              59889318 2 +  63644993 tt
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55770001 2 +  59248254 tt
i macFas5.chr19             I 337 I 4
s chlSab2.chr6               47583116 2 +  50890351 tt
i chlSab2.chr6              C 0 I 4
s calJac3.chr22              45939314 1 +  49145316 -t
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e nomLeu3.chr10             103329802 64436 - 106955855 T
e papAnu2.chr19              47874897 0 +  51301725 C
e rheMac3.chr19              60629065 2 +  64156825 I

a score=16526.000000
s hg38.chr19_GL949751v2_alt    893813 27 +   1002683 attattattttttttttttttgagata
s panTro4.chr19              59889320 25 +  63644993 tttttt--tttttttttttttgagata
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60629067 25 +  64156825 tttttt--ttttttttttttggagacg
i rheMac3.chr19             I 2 C 0
s macFas5.chr19              55770007 25 +  59248254 tttatt--tttttttttttttgagacg
i macFas5.chr19             I 4 C 0
s papAnu2.chr19              47874897 18 +  51301725 ---------ttttttttttttgagata
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45939315 20 +  49145316 -------ttttgtttgtttttgagaca
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e nomLeu3.chr10             103329802 64436 - 106955855 T
e chlSab2.chr6               47583118  4 +  50890351 I

a score=98946.000000
s hg38.chr19_GL949751v2_alt    893840 169 +   1002683 gagtctctct------ctgttgcccaggctggagtgcagtggcgtgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagt-agctgggactacaggcgcccaccaccacgcctggctaattttttt-gtgtttttagtagagacgg
s panTro4.chr19              59889345 170 +  63644993 gagtctcaat------ctgtcacccaggctggagtgcagtggcgcgatcccggctcactgcaagctccgcctcccgggttcacgtcattctcctgcctcagcctcccgagt-agctgggactacaggcgcccaccaccacgcccggctaattttttttgtgtttttagtagagacgg
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60629092 168 +  64156825 gagtctcgct------ctgtagcccaggctgcagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctccggcctcagcctccggagt-agctgggactacaggcgcctgccacctcacccggctattttttgt-at-ttcttagtagagacgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55770032 173 +  59248254 gagtctcgctctgtcactgtagcccaggctgcagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctccggcctcagcctccggagt-agctgggactacagg-ggctgccacctcgcccagctattttttgt-at-ttcttagtagagacgg
i macFas5.chr19             C 0 C 0
s calJac3.chr22              45939335 167 +  49145316 gggtcttgct------ctgttgccctggcttgattgcggtggcaagatcatagttcattacagcctcaaccttccaggctccggtgatcatccgacctcagcctccctttcgaactgggact-cagttgtgcactgccatacctgactaatatttgt-a--tttttggtagagacag
i calJac3.chr22             C 0 I 715
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e nomLeu3.chr10             103329802 64436 - 106955855 T
e chlSab2.chr6               47583118   4 +  50890351 I
e papAnu2.chr19              47874915   0 +  51301725 C

a score=53878.000000
s hg38.chr19_GL949751v2_alt    894009 120 +   1002683 ggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccCCTGAAGA----TTGTG----
s panTro4.chr19              59889515 120 +  63644993 ggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctcccagagtgctgggattacaggcgtgagccaccgcgcccagccCCTGAAGA----TTGTG----
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60629260 122 +  64156825 ggtttcaccgtgttacccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcT------GAttttttttttttt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55770205 118 +  59248254 ggtttcaccgtgttacccaggatggtctcgatctcctgacctcgtgatccgcccatctcggcctcctaaagtgctgggattacaggcttgagccaccgcgcccggcc------GA----ttttttttt
i macFas5.chr19             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e calJac3.chr22              45939502 715 +  49145316 I
e nomLeu3.chr10             103329802 64436 - 106955855 T
e chlSab2.chr6               47583118   4 +  50890351 I
e papAnu2.chr19              47874915   0 +  51301725 C

a score=9370.000000
s hg38.chr19_GL949751v2_alt    894129 10 +   1002683 ttttgagatg
s panTro4.chr19              59889635 10 +  63644993 ttttgagatg
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60629382 10 +  64156825 ttttgagatg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55770323 10 +  59248254 ttttgagatg
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47583122 10 +  50890351 ttttgagatg
i chlSab2.chr6              I 4 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e calJac3.chr22              45939502 715 +  49145316 I
e nomLeu3.chr10             103329802 64436 - 106955855 T
e papAnu2.chr19              47874915  0 +  51301725 C

a score=368992.000000
s hg38.chr19_GL949751v2_alt    894139 292 +   1002683 gggtcttgctgtgttgctccggcttgattgcagtggcacagtcatagctcattgcagcctcaaccttccaggctccagagatcctcttacctcagcctcctgagtagctgggactacaggtgtgcactgccacacctgactaatatttgtatttttggtagggacagtttcactatgttgccagatatggtgtcaaactcctggtctcaagtgatcctcccaccttggcctcccaaagtgctgggattacagacatgattcaccacacctggccATGAAGAC-----------------------------tttttttttt
s panTro4.chr19              59889645 283 +  63644993 gggtcttgctatgttgctccggcttgattgcagtggtgcagtcatagctcattgcagcctcaaccttccaggctccagagatcctcttacctcagcctcctgagtagctgggactacaggtgtgcactgccacacctgactaatatttgtatttttggtagggacagtttcactatgttg---------gtgtcaaactcctggtctcaagtgatcctcccaccttggcctcccaaagtgctgggattacagacatgattcaccacacctggccATGAAGAC-----------------------------tttttttttt
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60629392 292 +  64156825 ggttcttgctctgttgccctggcttgattgcggtggcacaatcatagctcattgcagcctcaaccttccaggcttcagagatccttttacctcagactcctgagtagctggaactacaggtgtgccctgccacacctgactaatatttgtatttttggtggggacagtttcactgtgttgccagatacggtgtcaaactcctggtgtcaagtgatcctcccaccttggcctcccagagtgctggggttacagacatgattcaccacacctggccATGAAGAC-----------------------------tttttatttt
i rheMac3.chr19             C 0 T 77969
s macFas5.chr19              55770333 292 +  59248254 ggttcttgctctgttgccctggcttgattgcggtggcacaatcatagctcattgcatcctcaaccttccaggcttcagagatccttttacctcagactcctgagtagctggaactacaggtgtgccctgccacacctgactaatatttgtatttttggtggggacagtttcactgtgttgccagatacggtgtcaaactcctggtctcaagtgatcctcccaccttggcctcccagagtgctggggttacagacatgattcaccacacctggccATGAAGAC-----------------------------tttttatttt
i macFas5.chr19             C 0 I 30
s papAnu2.chr19              47874915 317 +  51301725 ggatcttgctctgttgccctggcttgattgtggtggcacaatcatagctcattgcagcctcagccttccaggctccagagatcctcttacctcagcctcctgagtagctgggactacaggtgtgccctgccacacctgactaatatttgtatttttggtggggacagtttcactgtgttgccagatatggtgtcaaactcctggtctcaagtgatcctcccaccttggcctcccagagtgctggggttacagacatgattcaccacacctggccatgaagacttttattttt----ttagtattatttttatttttatttt
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               47583132 321 +  50890351 ggatcttgctctgttgccctggcttgattgcggtggcacaatcatagttcattgcagcctcaaccttccaggctccagagatcctcttacctcagactcctgagtagctggaactacaggtgtgctctgccacacccgactaatacgtgtatttttggtggggacagtttcactctgttgccagatacagtgtcaaactcttggtctcaagtgatcctcccaccttggcctcccagagtgctggggttacagacatgattcaccacacctggccATGAAGACtttttattttattattattattatttttatttttatttt
i chlSab2.chr6              C 0 I 2
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e calJac3.chr22              45939502 715 +  49145316 I
e nomLeu3.chr10             103329802 64436 - 106955855 T

a score=218958.000000
s hg38.chr19_GL949751v2_alt    894431 299 +   1002683 t-ggacaaagtctcactctgttgcccaggatggaatgcagtggcatgatctcagctcactgcaacctctgacctccgcctccc-ggttcaagtgattctcttgcctcagcctcccgagtagctgggattataggtgtctgccaccaagcccagctaatttttgtaattttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacgtgcctcagcctcccaaagtgttgggattacaggtgtgagtcactgcgcctggtcTCATGAAGACCtt
s panTro4.chr19              59889928 300 +  63644993 ttggacaaagtctcactctgttgcccaggatggaatgcagtggcatgatctcagctcactgcaacctctgacctccgcctccc-agttcaagcgattctcttgcctcagcctcccgagtagctgggattacaggtgtctgccaccaagcccagctaatttttgtaattttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccgcgtgcctcagcctcccaaagtgttgggattacgggtgtgagtcactgcgcctggtcTCATGAAGACCtt
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55770655 272 +  59248254 -ttgacaaagtcttactcttttgcccaggatggaattcagtggcatgatcttggctcactgtaac--ctgacctccgcctcccgggttcaagcgattctcttgccgcagcctccagagcagctgggattacaggcacccgccaccacacccagcta--------------------------atttcaccatgtttgtcaggctggtctcaaactcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattataggtgtgagccactgtgcccagccTCATGAAGACCtt
i macFas5.chr19             I 30 C 0
s papAnu2.chr19              47875234 298 +  51301725 -ttgac--agtctcacgctgtcacccaggatggaatgcagtggcatgatcttggctcactgtaacctctgacctccgcctcccgggttcaaaagattctcttgCCATAGCCTccggagtagatgggattacaagcacccgccaccacgtctggctaatttttgtaattttagtagagacaggatttcaccatgttcgtcaggctagtctcgaactcctgacctcgtgatccacctgcctcagtctcccaaagtgctgggattataggtgtgagccactgtgcccggcctcgtGAAgacctt
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               47583455 296 +  50890351 -ttgacaaagtct----cttttgcccaggatggaatgcagtggcatgatcttggctcactgtaacctctgacctccgcctcctgggttcaagcgattctcttgccgcagcctccggagtagctgggattacaggcacccaccaccacacccggctaatttttgtaattttagtagagacaggagttcaccatgttcgtcaggctggtcttgaactcctgacctcatgatccacctgcctcagcctcccaaagtgctgggattataggtgtgagccactgtgcccagccTCATGAAGACCtt
i chlSab2.chr6              I 2 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56811504 90216 +  60714840 T
e calJac3.chr22              45939502 715 +  49145316 I
e nomLeu3.chr10             103329802 64436 - 106955855 T
e rheMac3.chr19              60629684 77969 +  64156825 T

a score=940392.000000
s hg38.chr19_GL949751v2_alt    894730 442 +   1002683 ttttgagacagagtcttgctctgtcacccaggctggagtgcagtggtacaatct-------cactgcagcctccgcctcccaggttcaagtga-ttctcctgccttagcctcccaagtagctgggattacaggcgcctaccaccacgtctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactgctgacctcaaatgaactgtctgcctcagcctcacaaagtactgggattacaggcatgagccacctcacctggTGGTGAAGACTCTAAAGGCTCTTCTCAGATCAGCCTTTGTCCTGAATTTCACATGCCCGTGTCCAGTTCCCTCCCCAGCATCTTTTCAGGAGTTCCATGGACTCACCTCTTCATTATCCAGGGTTAAGCTGCAGATATTGTTATTAGGATTCCACCttgttct
s panTro4.chr19              59890228 439 +  63644993 ttttgagacagagtcttgctctgtcacccaggctggagtgcagtggtacaatct-------cactgcagcctccgcctcccaggttcaagtga-ttctcctgccttagcctcccgagtagctgggattacaggcgcctaccaccacgtctggctaatttttgtatt---agtagagacagcgtttcaccatgttggccaggctggtctcaaactgctgacctcaaatgaactgtctgcctcagcctcacaaagtactgggattacaggcatgagccacctcacctggTGGTGAAGACTCTAAAGGCTCTTCTCAGATCAGCCTTTGTCCTGAAGTTCACATGCCCGTGTCCAGTTCCCTCCCCAGCATCTTTTCAGGAGTTCCATGGTCTCGCCTCTTCATTATCCAGGGTTAAGCTGCAGATATTGTTATTAGGATTCCACCttgttct
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56721288 449 +  60714840 ttttgagacagaatctcgttctgttgcccagggtggagtgcagtggtgcaatctctcctcacactgcaacctccccctcccaggttgaagaaa-ttctcatgcatcagcctcctaagtaactgggaccacaggcgtgcaccactgcaccaggctactttttgtatttttagtagagatggggttttgccatgttgcccaggctagtctcaaactcctggcctcaagtgatctgtctgcctcggcctcacaaagtgctgggattacaggcgtgagccaccTGGTCTGGtggtgaagactctaaaggctcttctcagaccagcctttgtcctgaatttcacatgcccgtgttcagttgcctccccagcatctTTTCAGGAGTTCCACAGACTCGCCCCTTCATTATCCAGGGTTAAGCTGCAGATATTCTTATTAGGATTCCACCTTGTTCT
i ponAbe2.chr19             T 90216 I 99025
s nomLeu3.chr10             103265366 423 - 106955855 ttttgagacagaatctcgttctgttgcccaggctggagtgcagtggtgcaatctctgctcacactgcaacctccacctcccaggttgaagcaa-ttctcatgcatcagcctcctaagtaactgggaccagaggcgtgcaccaccgcaccaggctactttgtgtatttttagtagagacggagttttgccatgttgcccaggctcgtctcaaactcctggcctcaagtgatctgtctgcctcggcctcacaaagtgctgggattacaggcgtgagccaccTCACGTGGtggtgaagactctaaaggctcttctcagaccagcctttgtcctgaagttcacatgcctgtgtccagttgcctccccagcatctTTTCAGGAGTTCCACGGACTCGCCCCTTCATTATCCAGGGTTAAGCTGCAGATA--------------------------
i nomLeu3.chr10             T 64436 C 0
s rheMac3.chr19              60551715 449 +  64156825 ttttgagacagaatctcgttctgtcgcccaggctggagtgcagtggcacaatctctgttcacactgcaccctccacctcccaggttgaagcaa-ttctcgtgcgtcggcctcctaagtaactgggaccacaggcgtgcaccaccgcaccaggctactttttgtatttttagtagagatggggttttgccatgtcgcccaggctagtctcaaactcctggcctcaagtgatctgtctgcctcggcctcacaccgtgctgggattacaggcgtgagccaccacgcctggTGGTGAAGACTCTAAAGGCTCTTCTCAGACCAGCCTTTGTCCTGAGGGTCACATGCCCGTGTCCAGTTACCTCTCCAGCATCTTTTCAGGAGTTCCATGGACTCGCCCCTTCATTATCCAGGGTTGAGCTACAGATATTCTGATTAGGATTCCACCTAGTTCT
i rheMac3.chr19             T 77969 I 78069
s macFas5.chr19              55770927 435 +  59248254 ttttgagacag--tcttgctctgtcacccaggctagagtacagtggtacaatct-------cactgcagcctccgcctcccagattcaagagatttctcctgcctcagtctccctagtagctgggattacaggtgcctaccaccacgcctggctaattttcgtattttcagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgagctcaagtgatctgtctgcctcagcctcacaacgtgctgggattacaggcgtgagccaccacgcctggTGGTGAAGACTCTAAAGGCTCTTCTCAGACCAGCCTTTGTCCTGAGGGTCACATGCCCGTGTCCAGCTGCCTCCCCAGCATCTTTTCAGGAGTTCCATGGACTCGCCCCTTCATTATCCAGGGTTAAGCTCCAGAT------ATTAGGATTCCACCttgttct
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47875532 434 +  51301725 ttttgagacag--tcttgctctgtcacccaggctagagtacagtggtacaatct-------cactgcagcctccacctcccaggttcaagaga-ttctcctgcctcagtctccctaggagctgggattacaggcgcctaccaccacgcctggctaattttcgtattttcagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgagctcaagtgatctgtctgcctcggcctcacaacgtgctgggattacaggcgtgagccaccgcgcctggtggtGAAGACTCTAAAGGCTCTTCTCAGACCAGCCTTTGTTCTGAGGGTCACATGCCCGTGTCCAGCTGCCTCCCCAACATCTTTTCAGGAGTTCCATGGACTCGCCCCTTCATTATCCAGGGTTAAGCTGCAGAT------ATTAGGATTccaccttgttct
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47583751 433 +  50890351 ttttgagacag--tcttgctctgtcacccaggctagagtacagtggtacaatct-------cactgcagcctccgcctcccaggttcaagagatttctcctgcctca-tctccctagtagctgggattacaggtgcctaccaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatctgtctgcctcagcctcacaaagtgctgggattacaggcatgagccacctcgcctggTGGTGAAGACTCTAAAGGCTCTTCTCAGACCAGCCTTTGTCCTGAGGTTCACATGCCCGTGTCCAGTTACCTCCCCAGCATCTTTTCAGGAGTTCCATGGACTCGCCCCTTCATTATCCAGGGTTAAACTGCAAAT------GTTAGGATTCCACCttgttt-
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e calJac3.chr22              45939502 715 +  49145316 I

a score=620.000000
s hg38.chr19_GL949751v2_alt    895172 5 +   1002683 -ctctc
s panTro4.chr19              59890667 4 +  63644993 -cttt-
i panTro4.chr19             C 0 C 0
s macFas5.chr19              55771362 4 +  59248254 -tttt-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47875966 5 +  51301725 ttttt-
i papAnu2.chr19             C 0 I 3
s chlSab2.chr6               47584184 5 +  50890351 ttttt-
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I
e calJac3.chr22              45939502 715 +  49145316 I
e nomLeu3.chr10             103265789 0 - 106955855 C
e rheMac3.chr19              60552164 78069 +  64156825 I

a score=215144.000000
s hg38.chr19_GL949751v2_alt    895177 141 +   1002683 tttttttttttttttttgatacggagtctcgcttgctcttttg-ccaggctgaagtgcagtggagcgatcttggctcactgcaatctccgcctcctgggttcaagcaattcccttgcctcagcctcgcaagtagctgggact
s panTro4.chr19              59890671 140 +  63644993 -ttttttttttttttttgagacggagtctcgcttgctcttttg-ccaggctgaagtgcagtggagcgatcttggctcactgcaatctccgcctcctgggttcaagcaattcccctgcctcagcctcgcaagtagctgggact
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103265789 133 - 106955855 --ttcttttctttttttgagac--agtctc----gctctgtcgcccaggctggagtgcagtggcgcagtctcggctcactgcaacctccatctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggac-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630233 141 +  64156825 ttttttcttttttttttgagattgagtctcacttgctttgttg-ccaggctggagcgcagtggcgcaatcgtggctcacttcagtctccgcctcctgggttcaagcaattcccctgcctcagcctcccaagtacctgggact
i rheMac3.chr19             I 78069 I 8
s macFas5.chr19              55771366 140 +  59248254 ttttttcttttttttttgagattgagtctcacttgctttgttg-ccaggctggagcgcagtggcgcaatcgtggctcacttcagtctccgcctcctgggttcaagcaattcccctgcctcagcctcccaagtacctgggac-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47875974 141 +  51301725 tttttttttttttttttgagatggagtctcacttgctttgttg-ccaggctggaacgcagtggcgcaatcgtggctcacttcagtctccgcctcctgggttcaagcagttcccctgcctcagcctcccaagtacctgggact
i papAnu2.chr19             I 3 C 0
s chlSab2.chr6               47584189 136 +  50890351 ttgttttttttttttttgagatggagtctc----gctttgttg-ccaggctggagctcagtggcgcaatcttggctcactgcagtctccgcctcctgggttcaagcaattcccctgcctcagcctcccaagtacctgggac-
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I
e calJac3.chr22              45939502 715 +  49145316 I

a score=4871.000000
s hg38.chr19_GL949751v2_alt    895318 10 +   1002683 tacaggtaac
s panTro4.chr19              59890811 10 +  63644993 tacaggtaac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103265922  9 - 106955855 tacaggt-gc
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55771506  9 +  59248254 tacagtt-gg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876115  8 +  51301725 -acagtt-gc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584325  9 +  50890351 tacagtt-gc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I
e calJac3.chr22              45939502 715 +  49145316 I
e rheMac3.chr19              60630374  8 +  64156825 I

a score=233999.000000
s hg38.chr19_GL949751v2_alt    895328 140 +   1002683 acaccaccatgcccggctaattttttg---ttttagtagagacggggcttcaccatgttggccgggatggtctcgatctcctgac-ctcatgatccgcctgccttggcctcccaaagtgttggg-ttacaggcatgagccaccat
s panTro4.chr19              59890821 141 +  63644993 acaccaccatgcccggctaattttttg---ttctagtggagacggggcttcaccatgttggccaggatggtctcgatctcctgac-ctcatgatccgcctgcctcggcctcccaaagtgttgggattacaggcgtgagccaccat
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103265931 144 - 106955855 ccgccaccacgcccagctaattttttgtatttttagtagagacagtgtttcaccgtgttatccaggatggtctcgatcttctgac-ctcaggatctacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgT
i nomLeu3.chr10             C 0 I 66588
s rheMac3.chr19              60630382 143 +  64156825 gcaccaccatgcccggctaattttttgtg-ttttagtagagatggggcttcaccctgttggccaggatggtctcaatctcctgac-ttaatgatccacctgcctcggcctcccaaagtgttgggattacaggcgtgagccacccc
i rheMac3.chr19             I 8 C 0
s macFas5.chr19              55771515 143 +  59248254 gcaccaccatgcccggctaattttttgtg-ttttagtagagatggggcttcaccctgttggccaggatggtctcaatctcctgac-ttaatgatccacctgcctcggcctcccaaagtgttgggattacaggcgtgagccacccc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876123 143 +  51301725 tcaccaccatgcccggctaattttttgtg-ttttagtagagatggggcttcaccctgttggccaggatggtctcaagctcctgac-ttaatgatccacctgcgtcggcctcccaaagtgttgggattacaggcgtgagccacccc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584334 144 +  50890351 tcaccaccatgcccggctaattttttgtg-ttttagtagagatagggcatcaccctattggccaggatggtctcaatctcctgacactaatgatccacctgcctcggcctcccaaagtgttgggattacaggcgtgagccacccc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I
e calJac3.chr22              45939502 715 +  49145316 I

a score=6141.000000
s hg38.chr19_GL949751v2_alt    895468 6 +   1002683 gcccgg
s panTro4.chr19              59890962 6 +  63644993 gcccgg
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60630525 6 +  64156825 acccga
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55771658 6 +  59248254 acccga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876266 6 +  51301725 acccga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584478 6 +  50890351 acccaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I
e calJac3.chr22              45939502 715 +  49145316 I
e nomLeu3.chr10             103266075 66588 - 106955855 I

a score=353475.000000
s hg38.chr19_GL949751v2_alt    895474 201 +   1002683 cTGATTCCACCTTGTTCTTACATTCTTTCCCAGTTCATTTTAAATTTATCTACCTCATCAGAAACTAGGGGGTTAGGCCTggcaggcagatcacctgaggttgggagttcgagaccagcctgaccaacgtagagaaaccctgtctgtactaaaaatacaaaattagccaggtatggtggcacattcctgtaatcccagcta
s panTro4.chr19              59890968 201 +  63644993 cTGATTCCACCTTGTTCTTACATTCTTTCCCAGTTCATTTTAAATTTATCTACCTCATCAGAAACTAGGGGGTTAGGCCCggcaggcagatcacctgaggttgggagttcaagaccagcctgagcaacgtggagaaaccctgtctgtactaaaaatacaaaattagccaggtatggtggcgcattcctgtaatcccagcta
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103332663 201 - 106955855 CTGATTCCACCTTCTTCTTACATTCTTTCCCAGTTCATTTTAAATTTATTTACCTCATCAGAAACTAGGGAGTTAGGCCCggcaggcagatcacctgaggttgggagttcgagaccagcctgaccaacatggagaaaccctgtgtgtactaaaaatacaaaattcgccaggtatggtggcgcatgccggtaatcccagcta
i nomLeu3.chr10             I 66588 C 0
s rheMac3.chr19              60630531 201 +  64156825 cTGATTCCACCTTGTACTTATATTCTTTCCCAGTTCATTTTAAATTTATCTACCTCATCAGAAACTAGGGAGTTAGGCCCCgcagacagataacctgaggttgggagcttgagaccagcctgaccaacatggagaaaccctgtctgtactaaaaatacaaaattagccggacatggtggcccatgaccctcgtcccagcta
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55771664 201 +  59248254 cTGATTCCACCTTGTACTTATATTCTTTCCCAGTTCATTTTAAATTTATCTACCTCATCAGAAACTAGGGAGTTAGGCCCCgcagacagataacctgaggttgggagcttgagaccagcctgaccaacatggagaaaccctgtctgtactaaaaatacaaaattagccggacatggtggcccatgaccgtcgtcccagcta
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876272 201 +  51301725 cTGATTCCACCTTGTACTTATATTCTGTCCcagttcattttaaatttatctacCTCATCAGAAACTAGGGAGTTAGGCCCCGCAGacagataacctgaggttgggagctcgagaccagcctgaccaacatggagaaaccctgtctgtactaaaaatacaaaattagccggacatggtggcgcatgcccgtcgtcccagcta
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584484 201 +  50890351 ccGATTCCACCTTGTACTTATATTCTTTCCCAGTTCATTTTAAATGTATCTACCTCATCAGAAACTAGGGAGTTAGGCCCCgcaggcagataacctgaggttgggagctcgagaccagcctgacaaacatggagaaaccctgtctgtactaaaaatacaaaattagccggacatggtggcgcatgcccgtcgtcccagcta
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I
e calJac3.chr22              45939502 715 +  49145316 I

a score=114166.000000
s hg38.chr19_GL949751v2_alt    895675 53 +   1002683 ctccggaggccgaggcaggagaatcacttgaacccaggaggcggagg--ttgcag
s panTro4.chr19              59891169 53 +  63644993 ctcgggaggccgaggcaggagaatcacttgaaaccaggaggctgagg--ttgcag
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103332864 53 - 106955855 ctcgggaggctgaggcaggagaatcacttgaacccaggaggcagagg--ttgcag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630732 53 +  64156825 ctcaggaggctgaggcaggagaatcacttcaacccaggaggcagagg--ttgcag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55771865 53 +  59248254 ctcaggaggctgaggcaggagaatcacttcaacccaggaggcagagg--ttgcag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876473 53 +  51301725 ctcaggaggctgaggcaggagaatcacttcaacccaggaggcagagg--ttgcag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584685 53 +  50890351 ctcaggagactgaggcaggagaatcacttgaacccaggaggcagagg--ttgcag
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45940217 53 +  49145316 ctcaggaggctgaggcaggagagaagcttgaacccaggagatggagggatcgt--
i calJac3.chr22             I 715 C 0
e canFam3.chr1               20041887 933 - 122678785 I
e ponAbe2.chr19              56721737 99025 +  60714840 I

a score=253887.000000
s hg38.chr19_GL949751v2_alt    895728 140 +   1002683 tgagc-cgacatcacaccatt-gcattccag-cctgggcaacaagagcaaaactacatctcaaaaaaaaa-------------------------gaaaaaCTAGGCAGTTAATCCTCAAAGCCTTT-CCAGTGGCCTTATGCGTGAGTA----GTTtgtgtg-------tgtgtgtgtg
s panTro4.chr19              59891222 142 +  63644993 tgagc-cgagatcgcaccatt-gcattccag-cctgggcaacaagagcaaaactacgtctcaaaaaaaaaa-----------------------agaaaaaCTAGGCAGTTAATCTTCAAAGCCTTT-CCAGTGGCCTCATGCATGAGGG----gtgtgtgtg-------tgtgtgtgtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56820762 141 +  60714840 tgagc-cgagatcgcaccattggcactccagccctgggcaacaagagcaaaactacatctcaaaaaaaaa-------------------------gaaaaTCTAGGCAGTTAATCCTCAAAGCCTTTCCCAGTGG-CTTATGCATGAgt-----gtgtgtgtg-------tgtgtctgtg
i ponAbe2.chr19             I 99025 I 126
s nomLeu3.chr10             103332917 143 - 106955855 ggagc-agagatcgcaccatt-gcactccag-cctgggcaacaagagtgaaactacctctcaaaaaaaa--------------------------gaaaaaCTAGGCAGTTAATCCTCAAAGCCTTT-CCAGTGGCCTTATGCGTGAGTACTCtgtgtgtgtg-------tgtgtgtgtg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630785 123 +  64156825 tgagc-cgagatcgcgccact-gcactccag-cccgggcaacaagagcgaaactccgtctcaa--------------------------------gaaaaaTTAGGCAGTTAATCCTCAAAGCCTTT-CCAGTGACCTTATGCGTGAGTA----CTGTGTGTG-----------------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55771918 123 +  59248254 tgagc-cgagatcgcgccact-gcactccag-cccgggcaacaagagtgaaactccgtctcaa--------------------------------gaaaaaTTAGGCAGTTAATCCTCAAAGCCTTT-CCAGTGACCTTATGCGTGAGTA----Ctgtgtgtg-----------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876526 130 +  51301725 tgagc-cgagatcgcgccact-gcactccag-cccgggcgacaagagcgaaactccgtctcaa--------------------------------gaaaaattaGGCAGTTAATCCTCAAAGCCGTT-CCAGTGACCTTATGCGTGAGTA----CTGTGAGTACTGTGCG----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584738 123 +  50890351 tgagc-cgagattgcgccact-gcactccag-cccgggcaacaagagcgaaactctgtctcaa--------------------------------gaaaaaTTAGGCAGTTAATCCTCAAAGCCTTT-CCAGTGACCTTATGCGTGAGTA----Ctgtgtgtg-----------------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45940270 145 +  49145316 tgagcaagttattgtaccgag-gcacatcag-cttacgaaacacagacgaaagtctatctcaagacaaatatagggaaataaaaaTCGATAAGTAAAGAAAGTAGGGAGCTAATCCTCAAAGCCTTT-CCAAGCA-TTTATGTGTGAGT-------------------------------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I

a score=30663.000000
s hg38.chr19_GL949751v2_alt    895868 27 +   1002683 tgtgtg-----------------------------------tgtgtgtgtgtgtgt--------CTTTCA
s panTro4.chr19              59891364 35 +  63644993 tgtgtg-----------------------------------tgtgtgtgtgtgtgtgtgtgtgtCTTTCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821029 27 +  60714840 tgtgtg-----------------------------------tctgtgtgtgtgtgt--------TTTTCA
i ponAbe2.chr19             I 126 C 0
s nomLeu3.chr10             103333060 27 - 106955855 tgtgtg-----------------------------------tgtgtgtgtgtgtgt--------CTTTCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630908 21 +  64156825 -----------------------------------------TGTCTGTGTGTCTGT--------TTTTCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55772041 21 +  59248254 -----------------------------------------tgtctgtgtgtctgt--------TTTTCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876656 62 +  51301725 TGAGTACTGTGAGCCGTTCCAGTGACCTTATGCGTGagtactgtgtgtgtgtctgt--------ttttca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584861 21 +  50890351 -----------------------------------------tgtctgtgtgtctgt--------TTTTCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45940415 19 +  49145316 -------------------------------------------CCTGCGGTAATGT--------GTTTCA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20041887 933 - 122678785 I

a score=83355.000000
s hg38.chr19_GL949751v2_alt    895895 39 +   1002683 CACCATGTGTTCTGAACTACTTAGGAA--TTCTC--------ACCAGAA
s panTro4.chr19              59891399 39 +  63644993 CACCATGTGTTCTGAACTACTTAGGAA--TTCTC--------ACCGGAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821056 39 +  60714840 CACCATGTGTTCTGAACTACTAAGGAA--TTCTC--------ACCAGAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333087 39 - 106955855 CACCATGTGTTCTGAACTACTTAGGAA--TTCTC--------ACCAGAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630929 37 +  64156825 CGCCTTGAGTTCTGAACT--TTTAGAA--TTCAC--------ACCAGAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55772062 37 +  59248254 CGCCTTGAGTTCTGAACT--TTTAGAA--TTCAC--------ACCAGAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876718 37 +  51301725 cGCCTTGAGTTCTGAACT--TTTAGAA--TTCGC--------ACCAGAA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584882 37 +  50890351 CACCTTGAGTTCTGAACT--TTTAGAA--TTCGT--------ACCAGAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45940434 41 +  49145316 CCCCATGAGATATGAAATCAATAGGAGTCTTCTC--------ACCAGAA
i calJac3.chr22             C 0 I 328
s canFam3.chr1               20042820 47 - 122678785 CACTGTGTGTTCTCAACTACACAGGAA--GCAACCATAGGAAGCCAGAA
i canFam3.chr1              I 933 I 1

a score=80680.000000
s hg38.chr19_GL949751v2_alt    895934 28 +   1002683 AGGCACATAAACCTGGGATCATGGCCTA
s panTro4.chr19              59891438 28 +  63644993 AGGCACGTAAACCTGGGATCATGGCCTA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821095 28 +  60714840 AGGCACGTAAACCTGGGATCATGGCCTA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333126 28 - 106955855 AGGCACGTAAACCTGGGATCATGGCCTA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630966 28 +  64156825 AGGCACCTAAACCTGGGATCATGGCCTA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55772099 28 +  59248254 AGGCACCTAAACCTGGGATCATGGCCTA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876755 28 +  51301725 AGGCACCTAAACCTGGGATCATGGCCTA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584919 28 +  50890351 AGGCACCTAAACCTGGGATCATGGCCTA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20042868 28 - 122678785 AGACATGTAAGCCTGAGATAGTAACTTG
i canFam3.chr1              I 1 C 0
e calJac3.chr22              45940475 328 +  49145316 I

a score=965021.000000
s hg38.chr19_GL949751v2_alt    895962 327 +   1002683 ATGTACTTTCACTTTTACATCCAGTACCTTATCAACGTCCTTTTTAG-------------TACCTAATCTAGGCTTCACTACTGAGACTCAGGGGTCCAACTTGAGCCATCTTGGAGTCCC--------------------ACTGCCAGCACAGCAACAGGCCTGTAATGC-CGCCC--TTTTTCTCCAGGGATAACACGG---AAAGAACGACCA---CCTCTAGACGTGGACGAAATGCTGGAGCGCTTCAAAACAGAAGCACAAGGTGGGTGTCAGGACCTCCAATGTTGGAGTCAGCTGA-GGAAGC-CCCCCGTTCTTGCTGCTATCT--------CCTGTTCCTTTGAAGAACCCCATCTCTCTCCAATCTTT--
s panTro4.chr19              59891466 327 +  63644993 ATGTACTTTCACTTTTACATCCAGTACCTTGTCAACGTCCTTTTTAG-------------TACCTAATCTAGGCTTCACTACCGAGACTCAGTGGTCGAACTTGAGCCATCTTGGAGTCCC--------------------ACTGCCAGCACAGCAACAGGCCTGTAACGC-CCCCC--TTTTTCTTCAGGGATAACAAGG---AAAGAACGACCA---CCTCTAGACGTGGACGAAATGCTGGAGCGCCTCAAGACAGAAGCACTAGGTGGGTGTCAGGACCTCCAGTGTTGGAGTCAGCTGA-GGAAGC-CGCCCATTCTTGCTGCTTTCT--------CCTGTTCCTTTGAAGAACCCCATCTCTCTCCAGTCTTT--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821123 342 +  60714840 ATGTACTTTCACTTTTACATCCAGTACCTTGTCAACATCCTTTTTAGTAATCTAGTAAATTACCTAATCTAGACTTAACTATTGAGACTCAGTGGTCGAACTTGAGCCATCTTGGAGTCCC--------------------ACTGCCAGCACAGCAACAGGCCTGTAATGCGCCCCC--TTTTTCTTCAGGGATAACACGG---AAAGAACAACCA---CCTCTAGACGTGGAGGAAATGCTGGAGCACTTCAAAGCAGAAGCACTAGGTGGGTGTCAGGACCTCCGATGTTGGAGTCAGCTGAGGGAAGC-CGCCCCTTCTTGCTGCTTTCT--------CCTGTTCCTTTGAAGAACCCCATCTCTCTCCAATCTTT--
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333154 342 - 106955855 ATGTACTTTCACTTTTACATCCAGTACCTTGTCCACATTCTTTTTAGTAATCTAGTAAATTACCTAATCTAGGTTTAACTATTGAGACTCAGTGGTCGAACTTGAGCCATCTTGGAGTCCC--------------------ACTGCCAGCACAGCAACAGGCCTGTAATGTCCCCCC--TTTTTCTTCAGGGGTAACACGG---AAAGAACGACCA---CCTCTAGACCTGGAGGAAATGCTGGAACGCTTCAAAGCAGAAGCACTAGGTGGGTGTCAGGACCTCCGACGCTGGAGTCAGCCAAGGGAAGC-CGCCCCTTCTTGCTGCTTTCT--------CCTGTTCCTTTGAAGAACCCCATCTCTCTCCAATCTTT--
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60630994 341 +  64156825 ATGTACTTGCACTTTTACATCCAGTACCTCGTCAACATCCTTTTTAGTAATCTAGTAAATTACCTCATCTTGGCTTAACTATTGAGACTCAGTGGTC-CACTTGAGCCATCTTGGAGGCCC--------------------ACTGCCAGCACAGCAACAGGCCAGTAATGCCCCCCC--TTTTTCTTCAGGGATAACACGG---AAAGAAAGACAA---CCTGTAGACGTGGAGGAAATGCTGGAGCGTTTCAAAGCAGGAACACTAGGTGGGTGACAGGACCTCCAATGCTGGAGTCAGCTGAGGGAAGC-TGCCCCTTCTTGCTGCTTTCT--------CCTGTTCCTTTTAAGAACCCTGTCTCTTTCCGATCTTT--
i rheMac3.chr19             C 0 I 307
s macFas5.chr19              55772127 341 +  59248254 ATGTACTTGCACTTTTACATCCAGTACCTCGTCAACATCCTTTTTAGTAATCTAGTAAATTACCTCATCTAGGCTTAACTATTGAGACTCAGTGGTCGCACTTGAGCCATCTTGGAGGCCC--------------------ACTGCCAGCACAGCAACAGGCCAGTAATGCCCCCCC--TTTTTCTTCAGGGATAACACGG---AAAGAAAGACAA---CCTGTAGACGTGGAGGAAATGCTGGAGCGTTTCAAAGCAGGAACACTAGGTGGGTGACAGGACCTCCGATGCTGGAGTCAGCTGAGGGAAGC-TGCCCCTTCTTGCCGCTTTCT--------CCTGTTCCTTTTAAGAACCCCGTCTCTTTCCGATCTT---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47876783 342 +  51301725 ATGTACTTGCACTTTTACATCCAGTACCTCGCCAACATCCTTTTTAGTAATCTAGTAAATTACCTCATCTAGGCTTAACTATTGAGACTCAGTGGTCGCACTTGAGCCATCTTGGAGGCCC--------------------ACTGCCAGCACAGCAACAGGCCAGTAATGccccccc--TTTTTCTTCAGGGATAACACGG---AAAGAAAGAGAA---CCTGTAGACGTGGAGGAAATGCTGGAGCGTTTCAAAGCAGGAACACTAGGTGGGTGACAGGACCTCCGATGCTGGAGTCAGCTGAGGGAAGC-TGCCCCTTCTTGCTGCTTTCT--------CCTGTTCCTTTTAAGAACCCTGTCTCTTTCCGATCTTT--
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47584947 342 +  50890351 ATGTACTTGCACTTTTACATCCAGTACCTCGTCAACATCCTTTTTAGTAATCTAGTAAATTACCTAATCTAGGCTTAACTACTGAGACTCAGTGGTCGCACTTGAGCCATCTTGGAGGCCC--------------------ACTGCCAGCACAGCAACAGGCCAGTAACGCCCCTCC--TTTTTCTTCAGGGATAACACGG---AAAGAAAGACAA---CCTATAGACGTGGAGGAAATGCTGGAGCGTTTCAAAGCAGGAACACTAGGTGGGTGACAGGACCTCCGATGCTGGAGTCAGCTGAGGGAAGC-TGCCCCTTCTTGCTGCTTTCT--------CCTGTTCCTTTTAAGAACCCCGTCTCTTTCCAATCTTT--
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45940803 347 +  49145316 ACATACTTCCATTTTTATATCCAGTACCTTGTCAACATCGACTGTCCTAAGCTAGTAAATTAGCTAATCTAGGCGTAAGTATTGAGACTCAGTGGTTGCATTTGAGCCAGCCTGGAGTCCC--------------------ACGGCCAGCACAGCCACAGGCCTGTAGTGTCCCCTCTATTTTTTTTCAGAGACAATACGG---AAAGGAGAACCAGAGCCTGTAGACCTGGATGAAATGCTGGTGCACTTCAAGGCAGAAGCACAAGGTGGGTGTTAGGACCTCCGACGTCAGAGTCCGCTGAGGGAAGC-TGCCCTCTCCTGCCGCTTTCT--------CCTGTTCCTCTGGAGAACCCCAACTCTCCCCAATCTCA--
i calJac3.chr22             I 328 I 2
s canFam3.chr1               20042896 354 - 122678785 ACACATTTTAA-TTTTATCTCTAAGATCAGGTTAATGTCCTTTTTATGTAACTGG---------------GGGTTTAAGTA-TGAGACCCAGTTGTC-AACATGCGCATTCTTGAAGTCCTCTCTCCTAGGCAGAAGTTTAAGTACTGACATAGTTACAGGACTATAATG--CCTCC--TCTTTTCTCAGGGATCACCAGGACTACAGAACTAAAA---TGTGCAAACCTGGAAGAACCCCCAGAGCATGTAGAAGAAAAAGATTCAGGTTGGTCTTAGAACACCCAGAGTTGGAACAAGCCAAGCGACACATACCCCACCATGTTGTGTTCTCTCCACCCCCTTTCCTTTCTGGGAGCTCCATTTC--CCCAACCTCATT
i canFam3.chr1              C 0 C 0

a score=220421.000000
s hg38.chr19_GL949751v2_alt    896289 73 +   1002683 TCCTCCACTATTCTTAATGTGCCCACTGTCTCCTGGAGAATGCCAACCTCCCTTCCGTAAGAATAGAGGGAAG
s panTro4.chr19              59891793 73 +  63644993 TTCTCCACTATTCTTAATGTGCCCACTGTCTTCTGGAGAATGCCAACCTCCCTTCCATAAGAATAGAGGGAAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821465 69 +  60714840 TTCTCCACTATTCTTAATGTGCCCACTGTCTCCTGGAGAATGCCAACCTC----CCATAAGAATAGAGGGAAG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333496 73 - 106955855 CTCTCCACTCTTCTTAATTTGCCCACTGTCTCCCGGAGAATGCCAACCTCCCTTCCATAAGAATAGAGGGAAG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60631642 73 +  64156825 TCCTCCACTATTCTTAATCTGCCCACTGTCTCCTAGAGAATTCCAACCTCCCTTCCCTAAGAATAACGGGAAG
i rheMac3.chr19             I 307 C 0
s macFas5.chr19              55772468 73 +  59248254 TCCTCCACTATTCTTAATCTGCCCACTGTCTCCTAGAGAATTCCAACCTCCCTTCCGTAAGCATAGCGGGAAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47877125 73 +  51301725 TCCTCCACTATTCTTAATCTGCCTACTGTCTCCTGGAGAATTCCAACCTCCCTTCCATAAGCATAGCGGGCAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47585289 73 +  50890351 TTCTCCACTATTCTTAATCTGCCTACTGTCTCCTGGAGAATTCCAACCTCCCTTCCGTAAGAATGGCGGGAAG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45941152 73 +  49145316 TTCTCCACTATTTTTAATTTGCCTACTGTCTACTGGAGAATGCCAAACTCCCTTCCATAAGAATAGAGGAAAg
i calJac3.chr22             I 2 I 398
s canFam3.chr1               20043250 72 - 122678785 TTCTCCACTACTAATAGT-TATCAGTTGTCTCAGAGGAAATGCCTTCCTCCCTCACTTAACAACAAAGTGAGG
i canFam3.chr1              C 0 C 0

a score=20214.000000
s hg38.chr19_GL949751v2_alt    896362 9 +   1002683 AACGAACGT
s panTro4.chr19              59891866 9 +  63644993 AACGAACAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821534 9 +  60714840 AACGAACGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333569 9 - 106955855 AACGAACGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60631715 9 +  64156825 AACAAACGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55772541 9 +  59248254 AACAAATGT
i macFas5.chr19             C 0 I 368
s papAnu2.chr19              47877198 9 +  51301725 AACAAATGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47585362 9 +  50890351 AACAAATGT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20043322 9 - 122678785 AATGACCAC
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45941225 398 +  49145316 I

a score=102825.000000
s hg38.chr19_GL949751v2_alt    896371 78 +   1002683 TGCAGAGAATTAGAAC----TCAGTTTGTAGAAAGTTAGGAGCACAGCGCAGAG--AGtttttg--tttttgtttttg-ttttgaga
s panTro4.chr19              59891875 72 +  63644993 TGCAGAGAATTAGAAC----TCAGTTTGTAGAAAGTTAGGAGCACGATGCAGAG--AGtttttg--tttttgtttt-------gaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821543 72 +  60714840 TGCAGAGAATTAGAAC----TCAGTTTGTAGAAAGTTAGGAGCACGGTGCAGAG--AGtttttg--tttttgtttt-------gaga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333578 79 - 106955855 TGCAGAGAATTAGAAC----TCAGTTTGTAGAAAGTTAGGAGCACGGTGCAAAG--AGttcttg--tttttgtttttgtttttgaga
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60631724 66 +  64156825 TGCGGAGAATTAGAAC-----CAGTCTGTAGAAAGTTAGGAGCATGGTGCAG-------Gtttg--tttttgtttt-------gaga
i rheMac3.chr19             C 0 C 0
s papAnu2.chr19              47877207 66 +  51301725 TGCGGAGAATTAGAAC-----CAGTCTGTAGAAAGTTAGGAGCGTGGTgcag-------ttttg--tttatgtttt-------gaga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47585371 66 +  50890351 TGTGGAGAATTAGAAC-----CAGTCTGTAGAAAGTTAGGAGCATGGTGCAG-------ttttg--tttttgtttt-------gaga
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20043331 79 - 122678785 TGAAGAGAACTGGAATTCTTTCAGTTCACGGAAAATT-GGTGTACTGTATGGAGTTACTCTTTAATTTTTCAATTT-------CAGA
i canFam3.chr1              C 0 I 1335
e calJac3.chr22              45941225 398 +  49145316 I
e macFas5.chr19              55772550 368 +  59248254 I

a score=75913.000000
s hg38.chr19_GL949751v2_alt    896449 50 +   1002683 cag----tttctctgttggccaggttggaatgcaatggcgcgatctcggctcac
s panTro4.chr19              59891947 50 +  63644993 cag----tttctctgttggccaggctggaatgcaatggcgcgatctcggctcac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821615 50 +  60714840 cag----tttctctgttgcccaggctggaatgcaatggcgagatctcggctcac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103333657 54 - 106955855 cggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60631790 52 +  64156825 tggag--tttctctgtcgcccaggctggaatgcagtggcgcgatctcagctcac
i rheMac3.chr19             C 0 M 226
s papAnu2.chr19              47877273 52 +  51301725 tggag--tttctccgtcgcccaggctggaatgcagtggtgcgatctctgctcac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47585437 52 +  50890351 tggag--tttctctgttgcccaggctggaatacagtggtgcgatctctgctcac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e macFas5.chr19              55772550 368 +  59248254 I

a score=125908.000000
s hg38.chr19_GL949751v2_alt    896499 117 +   1002683 tgtaacctccacctcccaggttcaagcgattctcctgattctcctgactcagcctc-ctgagtagctgggattataggcacctgccaccacacccagctaattttttttttttttttt
s panTro4.chr19              59891997 117 +  63644993 tgtaacctccacctcccaggttcaagcgattctcctgattctcctgactcagcctc-ctgagtagcggggattataggcacctgccaccacacccagctaattttttttttttttttt
i panTro4.chr19             C 0 I 2
s ponAbe2.chr19              56821665 117 +  60714840 tgtaacttccacctcccaggttcaagcgattctcctgattctcctgactcagcctc-ctgagtagccaggattataggcacctgccaccacacccaactaattttttttttttttttt
i ponAbe2.chr19             C 0 I 9
s nomLeu3.chr10             103333711 108 - 106955855 tgcaagctccgcctcccgggttcacgc---------cattctcctgcctcagcctctccgagtagctgggactacaggcgcccgccaccacg-ccggctaattttttttttgtatttt
i nomLeu3.chr10             C 0 I 5
s papAnu2.chr19              47877325 114 +  51301725 tgcaacctccacctcccaggttcaagcaattctcctgaccctcctgcctcagcctc-ctgagtagctgggattgcaggtgcctgccaccacacccagctaatttttttttttttt---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47585489 114 +  50890351 tgcaacctccacctcccaggttcaagcgattctcctgactctcctgcctcagcctc-ctgagtagctgggattgcaggtgcctgccaccacacccagctaatttttttttttttt---
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e macFas5.chr19              55772550 368 +  59248254 I
e rheMac3.chr19              60631842 226 +  64156825 M

a score=187842.000000
s hg38.chr19_GL949751v2_alt    896616 132 +   1002683 gagacgaag--------------------------------------------------------------------------------------------------tcttgttct-------------tgtcacccaggctggagtatagtggcaccatccctgttcactgcaacctccgcctcccagattcaag---------tgattgtcctgtctcagcctcctgagtagctgggactacaggtgcat
s panTro4.chr19              59892116 132 +  63644993 gagacgaag--------------------------------------------------------------------------------------------------tcttgttct-------------tgtcacccaggctggagtatagtggcaccatcccttttcactgcaacctccgcctcccagattcaag---------tgattgtcctgtctcagcctcctgagtagctgggactacaggtgcat
i panTro4.chr19             I 2 C 0
s ponAbe2.chr19              56821791 132 +  60714840 gagacgaag--------------------------------------------------------------------------------------------------tcttgttct-------------tgtcacccaggctggagtatagtggcaccatccctgttcactgcaacctccgcctcccagattcaag---------tgattgtcctgcctcagcctcctgagtagctgggactacaggtgcat
i ponAbe2.chr19             I 9 C 0
s nomLeu3.chr10             103333824 251 - 106955855 gagacagggtttcaccgtggtctcgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaagcgtgagccaccacacccggcctttgtttttgttttgagacagtttctctgtcgcccaagctggaatgcaatggcacgatctcggctcactgtaacctccacctcccaggtccaagcaattctcctgattctcctgactcagccgcctgagtagccggga-tataggcgcct
i nomLeu3.chr10             I 5 C 0
s macFas5.chr19              55772918 132 +  59248254 gagacgaag--------------------------------------------------------------------------------------------------tcttgttct-------------tgtcatccaggctggagtacagtggtatcatccctgttcactgcagcctccgcctcccaggttcaag---------tgattctcctacctcagcctcccaagtagctgggattataggtgcac
i macFas5.chr19             I 368 C 0
s papAnu2.chr19              47877439 132 +  51301725 gagatgaag--------------------------------------------------------------------------------------------------tcttgttct-------------tgtcatccaggctggagtacagtggtatcatccctgttcactgcagcctccgcctcccaggttcaag---------tgattctcctacctcagcctcccaagtagctgggattacaggtgcac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47585603 132 +  50890351 gagatgaag--------------------------------------------------------------------------------------------------tcttgttct-------------tgtcatccaggctggagttcagtggtatcatccctcttcactgcagcctccgcctcccaggttcaag---------tgattctcctacctcaacctcccaagtagctgggattacaggtgcat
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e rheMac3.chr19              60631842 226 +  64156825 M

a score=176858.000000
s hg38.chr19_GL949751v2_alt    896748 102 +   1002683 gccaccacgcccagctaatt-----tttttttgtacttttagtagagacaggtttcaccatctcattcagggtgg------------------------tctcaaactcctgacctcaaga-----------gatctgct--cc
s panTro4.chr19              59892248  99 +  63644993 gccaccacgcccagctaatt-----tttttt-gtacttttagtagagacaggtttcaccatctcagtcaggctgg------------------------tctcgaactcctgacctc--ga-----------gatctgcc--cc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56821923 102 +  60714840 gccaccacgcccagctaatt-----tttttttgtatttttagtagagacaggtttcaccatctcagtcaggctgg------------------------tcttgaactcctgacctcaaga-----------gatctgca--cc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103334075 135 - 106955855 gccaccacacccagcTAACt-----ttttttttttttttttg-agacaaagtcttgttcttgtcacccaggctggagtatagtggcaccatccctgttcactgcaacctctgcctcccagattgaagtgattgtcctgcc--t-
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60632068 105 +  64156825 gccaccaagcccagctaattttttctttttttatatttttagtagagacaggtttcaccatctcagtcaggctgg------------------------tctcgaactcctgacctcaaga-----------gatctgcc----
i rheMac3.chr19             M 226 C 0
s macFas5.chr19              55773050 105 +  59248254 gccaccaagcccagctaattttttctttttttatatttttagtagagacaggtttcaccatctcagtcaggctgg------------------------tctcaaactcctgacctcaaga-----------gatctgcc----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47877571 107 +  51301725 gccaccaagcccagctaattttttctttttttgtatttttagtagagacaggtttcaccatctcagtcaggctgg------------------------tctcgaactcctgacctcaaga-----------gatctgcccc--
i papAnu2.chr19             C 0 M 318
s chlSab2.chr6               47585735 105 +  50890351 gccaccaagcccagctaattttttctttttttgtatttttagtagagacaggtttcaccatctcagtcaggctgg------------------------tctcgaactcctgacctcaaga-----------gatctgcc----
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I

a score=210.000000
s hg38.chr19_GL949751v2_alt    896850 8 +   1002683 acccaccc
s panTro4.chr19              59892347 2 +  63644993 ------cc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822025 2 +  60714840 ------cc
i ponAbe2.chr19             C 0 I 2
s rheMac3.chr19              60632173 3 +  64156825 -----ccc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55773155 3 +  59248254 -----ccc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47585840 3 +  50890351 -----ccc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103334210 0 - 106955855 C
e papAnu2.chr19              47877678 318 +  51301725 M

a score=49644.000000
s hg38.chr19_GL949751v2_alt    896858 50 +   1002683 ccaagtctcccgaagtgctgggattacaggcgagagccaccgtacccggc
s panTro4.chr19              59892349 50 +  63644993 cccagtctcccaaagtgctgggattacaggcgtgagccaccgtacccggc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103334210 48 - 106955855 --cagcctcctgagtagctgggactacaggtgcatgccaccacgcccagc
i nomLeu3.chr10             C 0 M 880
s rheMac3.chr19              60632176 50 +  64156825 ttcagcctcccaaagtgctgggatcacaggcatgagccacagcacgcggc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55773158 50 +  59248254 ttcagcctcccaaagtgctgggatcacaggcatgagccacagcacgcggc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47585843 50 +  50890351 ttcagcctcccaaagtgctgggatcacaggcatgagccacagcacgcggc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e ponAbe2.chr19              56822027  2 +  60714840 I
e calJac3.chr22              45941225 398 +  49145316 I
e papAnu2.chr19              47877678 318 +  51301725 M

a score=165380.000000
s hg38.chr19_GL949751v2_alt    896908 200 +   1002683 cTTCTTTAAATTATTTAAAAGTTGACAGGTggccaggtgtggtggctctcacctataatctcccagcactttgggaggctgaggcgggtggatca--------agagatcgagaccatcctggccaacatggtgaaaccc-aactctactaaaaacacaaaaattagccgggtgtggtggcacccgcctgtagtcccagctactcagga
s panTro4.chr19              59892399 209 +  63644993 cTTCTTTAAATTATTTAAAAGTTGACTGGTggccaggtgtggtggctcacacctataatctcccagcactttgggaggctgaagcgggtggatcacgagatcaagagatcgagaccgtcctggccaacatggcgaaaccccaactctactaaaaacacaaaaattagccgggtatggtggcacccgcctgtagtcccagctactcagga
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60632226 209 +  64156825 cTTCTTTAAATTCTTTACAAGTTGACAGGTggccaggcacggtagctcacacctgtaatctcccagcactttgggaggctgaggcgggtgggtcgtgagttcaagagattgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcgtgtacctgtagtcccagctactcagaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55773208 209 +  59248254 cTTCTTTAAATTCTTTACAAGTTGACAGGTggccaggcacggtagctcacacctgtaatctcccagcactttgggaggctgaggcgggtggatcgtgagttcaagagattgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcgtgtacctgtagtcccagctactcagaa
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47585893 207 +  50890351 cTTCTTTAAATTCTTTACAAGTTGACAGGTggccaggcacggtagctcacgcctgtaatctcccagcactttgggaggctgaggcgggtggatcgtgagttc--gagattgagactatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcgcgtaccggtagtcccagctactcagaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e ponAbe2.chr19              56822027   2 +  60714840 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103334258 880 - 106955855 M
e papAnu2.chr19              47877678 318 +  51301725 M

a score=247646.000000
s hg38.chr19_GL949751v2_alt    897108 223 +   1002683 ggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagattgtgccactgcactccagcctggcaacagtgcgagactccatctt-aaaaaaaaaaaaaaaaaa--TTGACAGGCATAAATGTATTTATGGTACATTGCTCAGACAACTTTAATATAAACAACTTACAGAGAAAATTGAGTCTTTTGGGTAGGTGACTTGCCTGAGCTG
s panTro4.chr19              59892608 225 +  63644993 ggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagattgtgccactgcactccagcctggcaacagtgcgagactccatctt-aaaaaaaaaaaaaaaaaaaaTTGACAGGCATAAATGTATTTATGGTACATTGCTCAGACAACTTTAATATAAACAACTTACAGAGAAAATTGAGTCTTTTGGGTAGGTGACTTGCCTGAGCTG
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103335158 220 - 106955855 ggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccaagatcgtgccactgcactccagcctggcaacagcgtgagactccatctc-aaaaaaaaaaaaaaa-----TTGACAGGCATAAATGTATTTATGGTACATTGTTCAGACAACTTTAATATAAACAACTCACAGAGAAAATTGAGTCTTTTGGGTAGGTGACTTGCCTGAGCTG
i nomLeu3.chr10             M 880 C 0
s rheMac3.chr19              60632435 205 +  64156825 ggctgaggcaggagaatcccttgaacctgggaggcagaggttgtagtgagctgagatcgtgccgctgtactccagcctggtgatagagcgagactccgtctcaaaaaaaaa------------TTGACAGGTATAAATGTATTTATGGTACATTGTTCAGACAACTT-----TAAACAACTC----AGAAAATTGAGTCTTATGGGTAGGTGACTTGTCTGAGCTG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55773417 204 +  59248254 ggctgaggcaggagaatcccttgaacctgggaggcagaggttgtagtgagctgagatcgtgccgctgtactccagcctggtgatagagcgagactccgtctc-aaaaaaaa------------TTGACAGGTATAAATGTATTTATGGTACATTGTTCAGACAACTT-----TAAACAACTC----AGAAAATTGAGTCTTATGGGTAGGTGACTTGTCTGAGCTG
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47586100 206 +  50890351 ggctgaggcaggagaatcccctgaacctgggaggcagaggttgtagtgagctgagatcgtgccgctgtactccagcctggcaatagagcgagactctgtctc-aaaaaaaa------------TTGACAGGTGTAAATGTATTTATGGTACATTGTTCAGACAACTT-----TAAACAACTC--AGAGAAAATTGAGTCTTATGGGTAGGTGACTTGTCTGAGCTG
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e ponAbe2.chr19              56822027   2 +  60714840 I
e calJac3.chr22              45941225 398 +  49145316 I
e papAnu2.chr19              47877678 318 +  51301725 M

a score=415354.000000
s hg38.chr19_GL949751v2_alt    897331 267 +   1002683 ACTTTGTGAT-AGG-ttttttctg-----------ttttttttgtttttgaaatagagtctcactctgtcatgcaggctggagtgcagtggccccatcttggctcactgcaatctctgcctcctgggttc-aaggggtcttcctgccacagcctccccaggtgctgggacta-taggtgcccaccac--tatgcctggctaacttttgtgtttttagtacagatggggtttcaacagggtagccaggttggtctagaactcctgacctcaagtgatccacctac
s panTro4.chr19              59892833 266 +  63644993 ACTTTGTGAT-AGG-ttttttctg-----------ttttttt-gtttttgaaatagagtctcactctgtcgtgcaggctggagtgcagtggcccgatcttggctcactgcaatctctgcctcccgggttc-aagggatcttcctgccacagcctccccaggtgctgggacta-taggtgcccaccac--tatgcctggctaactgttgtgtttttagtacagatggggtttcaccagggtagccaggttggtctggaactccttacttcaagtgatccacctac
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103335378 260 - 106955855 ACTTTGTGAT-AGGtttttttctg-----------ttttttttgtttttgaaatagagtctca--ctgtcacgcaggctggagtgcagtggcccgatcttggctcactgcaatctctgcctcctgggttc-aagggatcttcctgccatagcctccccaggtgctgggactg-taggtgcccaccactatatgcctggcta--------gtttttagtacagatggggtttcgccagggtagccaggttggtctggagctcctgacctcaagtgatccacctac
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60632640 266 +  64156825 ACTTTGTGATCAGG-ttttttctg--gg-----------tttttttctggaaatggagtctcactgtgtcacgcaggctggagtccagtggctcgatctcggctcactgcaatctctgcctcccaggttctaagggatgtttctgccgcagcctccccaggtactgggactactaggtgcccaccac--tatgcctggctaacttttgtgtttttagtacagat--agtctccccagggtagccaggttggtctggaactcctaacctcaagtaatctgcctac
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55773621 266 +  59248254 ACTTTGTGATCAGG-ttttttctg--gg-----------tttttttctggaaatggagtctcactgtgtcatgcaggctggagtccagtggctcgatctcggctcactgcaatctctgcctcccaggttctaagggatgtttctgccgcagcctccccaggtactgggactactaggtgcccaccac--tatgcctggctaacttttgtgtttttagtacagat--agtctccccagggtagccaggttggtctggaactcctaacctcaagtaatctgcctac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878000 272 +  51301725 aCTTTGTGATCAGg-ttttttctgttgg-------tttttttttttctcaaaatggagtctcactgtgtcacgcaggctggagtccagtggcttgatctcggctcactgcaatctctgcctcccaggttctaaggGATGTTTCTGCCGCAGCCTCCCCAGGTACTGGGACTagtaggtgcccaccac--tatgcctggctaacttttgtgtttttagtacagat--agtcTCCCCAGGgtagccaggttggtctggaactcctaacctcaagtaatctgcctac
i papAnu2.chr19             M 318 C 0
s chlSab2.chr6               47586306 277 +  50890351 ACTTTGTGATCAGG-TTttttctg--ttttttttttttttttttttctcaaaacggagtctcactgtgtcacgcaggctggagtccagtagcttgatctcggctcactgcaatctctgcctgctaggttctaagggatgtttctgccgcagcctccccaggtacgggaactactaggtgcccaccac--tatgcctggctaacttttgtgtttttagtacagat--agtctccccagggtagccaggttggtctggaactcctaacctcaagtaatctgcctac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e ponAbe2.chr19              56822027   2 +  60714840 I
e calJac3.chr22              45941225 398 +  49145316 I

a score=401953.000000
s hg38.chr19_GL949751v2_alt    897598 183 +   1002683 ctcggtctcctaaagtgctgggattacagctgtgaaccaccgcacctagccTGTGATCAGTTTCAGATCAGCCTTGCTTACTC-CACATTCCCTCTTATCTTCCTGGTAGCAtttttgttttttcttgagaaagagttttgcccttgtcgcccaggctagagtgcaatggtgtgatctcggctc
s panTro4.chr19              59893099 183 +  63644993 ctcggtctcctaaagtgctgggattacagctgtgaaccaccgcacctagccTGTGATCAGTTTCAGATCAGCCTTGCTTACTC-CACGTTCCCTCTTATCTTCCTGGTAGCAtttttgttttttcttgagaaagagttttgcccttgtcgcccaggctagagtgcaatggtgtgatctcggctc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822029 183 +  60714840 ctcagtctcccaaagtgctgggattacaggtgtgaaccaccgcacccagccTGTGATAAGTTTCAGATCAGCCTTGCTTACTC-CACGTTCCCTCTTATCTTCCTGGTAGCAtttttgttttttcttgagaaagagtttcgcccttgttgcccaggctggagtgcaatggtgtgatctcggctc
i ponAbe2.chr19             I 2 C 0
s nomLeu3.chr10             103335638 183 - 106955855 ctcggtctcccaaagtgctgggattacaggtgtgaaccaccacacccagccTGTGATCAGTTTCAGATCAGCCTTGCTTACTC-CACGTTCCCTCTTATCTTCCTGGTAGCAtttttgttttttcttgagaaagagtttcacccttgtcgcccaggctggagtgcagaggtgtcatcttggctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60632906 180 +  64156825 ctgggtctcccaaagtgctaggattgcgggtgggagctaccacacccagccTGCGATCAGTTTAAGATCAGCCTTGCTTACTCTCATGTTCCCTTTTATCTTCCTGGTAGCAtttttgttttgtctt----cagagtttctcccttgtcgcccaggctggagtgcactggcgtgatcttggctc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55773887 180 +  59248254 ctgggtctcccaaagtgctaggattacaggtgggagctaccacacccagccTGCGATCAGTTTAAGATCAGCCTTGCTTACTCTCATGTTCCCTTTTATCTTCCTGGTAGCAtttttgttttgtctt----cagagtttctcccttgtcgcccaggctggagtgcaatggcgtgatcttggctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878272 180 +  51301725 ctgggtctcccaaagcgctaggattcgAGGTgggagctaccacacccagcctgtgatCAGTTTAAGATCAGCCTTGCTTACTTTCACGTTCCCTTTTATCTTCCTggtagcatttttgttttgtctt----cagaGTTTCTcccttgtcgcccaggccggagtgcaatggcgtgatcttggctc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47586583 180 +  50890351 ctgggtctcccaaagtgctaggattacaggtgtgagctaccacacccagccTGTGATCAGTTTAAGATCAGCCTTGCTTACTCTCATGTTCCCTTTTATCTTCCTGGTAGCAtttttgttttgtctt----cagagtttctcccttgtcacccaggctggagtgcaatggcgtgatcttggctc
i chlSab2.chr6              C 0 I 2936
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I

a score=491456.000000
s hg38.chr19_GL949751v2_alt    897781 232 +   1002683 gccacaacctccacctcccaggttcaagtgatt---ctgcctcagcctcccgagtagctgggatcataggcgcccaccaccacatctggctaatttttgc------------------------------------atttgttagttttatttttagtag--acagggtttcaccatgttgggcaggctggtcttgaactcctgacctcaggtgatccacccacttcggcctcccaaagtgc-tgggattacaggcatgagccaccgtacctag
s panTro4.chr19              59893282 228 +  63644993 gccacaacctccacctcccaggttcaagtgatt---ctgcctcagcctcctgagtagctgggatcataggcgcccaccaccacatctggctaatttttgc------------------------------------atttgtt----ttatttttagtag--acagggtttcaccatgttgggcaggctggtcttgaactcctgacctcaggtgatccacccacttcggcctcccaaagtgc-tgggattacaggcatgagccaccgtacctag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822212 231 +  60714840 accacaacctccacctcccaggttcaagtgatt---ctgcctcagcctcccgagtagctgggatcataggcgcccaccaccacatctggctaatttttgc------------------------------------atttttta---gtatttttagtagacacagagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgc-tggaattacaggcatgagccaccgtacctag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103335821 235 - 106955855 accacaacctccacctcccaggttcaagtgatt---ctgccgcagcctcccgagtagctgggatcataggcgcccaccaccacatctggctaatttttgc------------------------------------attttttagttttatttttagtagacgcagggtttcaccatgttggccaggctggtcttgaactcctgagctcaggtgatccacccccctcggcctcccaaagcgcttgggattacaggcgtgagccaccgtgcctgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60633086 230 +  64156825 accacaacctccacctcccagattcaagcgattcttctgcctcagcctcccaagtagctgggattataggcgcccaccaccacaactgactaa-------------------------------------------ttttttttttttttttttgtgtagacatagggtctcaccgtgtttgtcaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgc-taggattacaggtgtaagccactgtacctag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55774067 273 +  59248254 accacaacctccacctcccagattcaagcgattctcctgcctcagcctcccaagtagctgggattataggcgcccaccaccacatctggctaattttttttttcttttttttttttttcttctttttcttttttttttttttttttttttttttttgtagacatagggtctcgccgtgtttgtcaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgc-taggattacaggtgtaagccactgtacctag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878452 250 +  51301725 accacaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattataggtgcccaccaccacatctggctaagttttttttctttttctttt-----------------------tctttttttttttttttttagtagacatagggtctcgccgtgtttgtcaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgc-taggattacaggtgtaagccactgtacctag
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47589699 239 +  50890351 accacaatctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattataggcgcccaccaccacatctggctaattttttttt----------------------------------tttttttttttttttttttagtagacatagggtctcgccatgtttgtcaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgc-taggattacaggtgtaagccactgtacctag
i chlSab2.chr6              I 2936 C 0
e canFam3.chr1               20043410 1335 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I

a score=321473.000000
s hg38.chr19_GL949751v2_alt    898013 120 +   1002683 ccCACATTGAC-TTTTGATACAGCAAGTA---------TTTCTTGCTATGGCTCTGTATAATAGAGGTGAGTAACTTGGTTGAAGGAATTGTTTGCCCTGTTCATCTCTCTAGACACGGCCAATGTCATT
s panTro4.chr19              59893510 120 +  63644993 ccCACATTGAC-TTTTGATACAGCAAGTA---------TTTCTTGCTATGGCTCTGTATAATAGAGATGAGTAACTTGGTTGAAGGAATTGTTTGCCCTGTTCATCTCTCTAGACCCGGCCAATGTCATT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822443 118 +  60714840 ccCACATTGGC---TTGATACAGCAAGTA---------TTTCTTGTTATGGCTCTGTATGATAGAGGTGAGTAACTTGGTTGAAGGAATTGTTTGCCCTGTTCATCTCTCTAGACCCGGCCAATGTCATT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336056 120 - 106955855 tcCACATTGAC-TTTTGATATAGCAAGTA---------TTTCTTGCTATGGCTCTGTAGAATAGAGGTGAGTAACTTGGTTGAAGGAATTGTTTGCCCTGTTCATCTCTCTAGACCTGGCCAATGTCATT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60633316 120 +  64156825 ccCACATTGAC-TTTTGATAGAGCAAGTA---------TTTCTTGTTATGGCTCTGTAGAATACAGGTGAGTAACTTGGTTGAAGGAATTGTTTGCCCTGTTCATCTCTCTAGACTTGGCCAATGTCATT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55774340 120 +  59248254 ccCACATTGAC-TTTTGATAGAGCAAGTA---------TTTCTTGTTATGGCTCTGTAGAATACAGGTGAGTAACTTGGTTGAAGGAATTGTTTGCCCTGTTCATCTCTCTAGACGTGGCCAATGTCATT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878702 120 +  51301725 cccaCATTGAC-TTTTGATAGAGCAAGTA---------TTTCTTGTTACGGCTCTGCAGAATAGAGGTGAGTAACTTGGTTGAAGGAATCGTTTGCCCTGTTCATCTCTCTAGACATGGCCAATGTCATT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47589938 120 +  50890351 ccCACATTGAC-TTTTGATAGAGCAAGTA---------TTTCTTGTTACGGCTCTGTAGAATAGAGGTGAGTAACTTGGTTGAAGGAATCGTTTGCCCTGTTCATCTCTCTAGACATGGCCAATGTCATT
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20044745 127 - 122678785 cTCACATTGATTTTTTGATAGAGCAATTAGAACAAATGTTTATTGTTATAGTTCCACAGAGGAGAGGCATGTAACTTGGTTTAGAATGTCATTTGCTCTGTTCATCTCTATAAACCTATCTGTCGCC---
i canFam3.chr1              I 1335 C 0
e calJac3.chr22              45941225 398 +  49145316 I

a score=14227.000000
s hg38.chr19_GL949751v2_alt    898133 9 +   1002683 CCTGGCACA
s panTro4.chr19              59893630 9 +  63644993 CCCGGCACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822561 9 +  60714840 CCCAGCACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336176 9 - 106955855 CCCAGCACA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60633436 9 +  64156825 CCCAGCACA
i rheMac3.chr19             C 0 C 0
s chlSab2.chr6               47590058 9 +  50890351 CCCAGCACA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20044872 9 - 122678785 CCTGCCACA
i canFam3.chr1              C 0 I 62
e calJac3.chr22              45941225 398 +  49145316 I
e papAnu2.chr19              47878822 0 +  51301725 C
e macFas5.chr19              55774460 0 +  59248254 C

a score=4114.000000
s hg38.chr19_GL949751v2_alt    898142  6 +   1002683 CAATC-----t
s panTro4.chr19              59893639  6 +  63644993 CAATC-----t
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822570 11 +  60714840 CAATCtttttt
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336185 10 - 106955855 CAATC-ttttt
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60633445  6 +  64156825 CAATC-----T
i rheMac3.chr19             C 0 I 1
s chlSab2.chr6               47590067  6 +  50890351 CAATC-----T
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e papAnu2.chr19              47878822  0 +  51301725 C
e macFas5.chr19              55774460  0 +  59248254 C

a score=150209.000000
s hg38.chr19_GL949751v2_alt    898148 289 +   1002683 ttttttttcttgagatggagtctcactctgttgcccagactggagtgcagtggtgcaatcttggcccactgcaacctctgctacccaggttcaagcgattctcctgcctcagcctcccaaatagctgggagtacaggtgtgtgccaccacgcccagctaattttttgtattttagtagagacagggtttcaccgtgttagtcaggatggtctggatctcctaacctcgtgatccgtccgcctcagcctcccaaagtgctgggatgacaggcgtgagccactgtgcccag
s panTro4.chr19              59893645 289 +  63644993 ttttttttcttgagatggagtctcgctctgttgcccagactggagtgcagtggtgcaatcttggcccactgcaacctctgctacccaggttcaagcgattctcctgcctcagcctcccaaatagctgggagtacaggtgtgtgccaccacgcccagctaattttttgtattttagtagagacagggtttcaccgtgttagccaggatggtctggatctcctaacctcgtgatccgcccgccgtggcctcccaaagtgctgggatgacaggcgtgagccactgtgcccgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822581 289 +  60714840 tttttttttttgagacggagtcttgctctgtcacccagactggagtgcagtggtgcaatcttggcccactgcaacctctgccacccaggttcaagcgattctcctgcctcagcctcccaagtagctgggagtacaggcgtgtgccaccacacccagctgattttttgtattttagtagagacggggtttcaccgtgttagccaagatggtctcaatctcctaacctcgtcatctgtccacctcagcctcccaaagtgctgggatgacaggcgtgagccactgtgcccgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336195 289 - 106955855 tttttttttttgagacagagtcttgctctgtcgcccagactggagtgcagtggtgcaatgttggcccactgcaacttctaccacccaggttcaagcgattctcctgcctcagcctcccaagtagctgggagtacaggcgtgtgccaccacgcccagctaattttttgtattttagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctaacctcgtgatcctcctgcctcggcctcccaaagtgctgggattacaggcgtgatccaccgtgcccgg
i nomLeu3.chr10             C 0 C 0
e canFam3.chr1               20044881  62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e chlSab2.chr6               47590073   0 +  50890351 C
e papAnu2.chr19              47878822   0 +  51301725 C
e macFas5.chr19              55774460   0 +  59248254 C
e rheMac3.chr19              60633451   1 +  64156825 I

a score=18578.000000
s hg38.chr19_GL949751v2_alt    898437 15 +   1002683 ccTAGCACACAATCT
s panTro4.chr19              59893934 15 +  63644993 ccTAGCACACAATCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822870 15 +  60714840 ccTAACACACAGTCT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336484 15 - 106955855 ccTAGCACACAACCT
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55774460 15 +  59248254 CCCAGCACACAATCT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878822 15 +  51301725 CCCAGCACACAATCT
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e chlSab2.chr6               47590073  0 +  50890351 C
e rheMac3.chr19              60633451  1 +  64156825 I

a score=1179.000000
s hg38.chr19_GL949751v2_alt    898452 1 +   1002683 T
s panTro4.chr19              59893949 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822885 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336499 1 - 106955855 T
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55774475 1 +  59248254 C
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878837 1 +  51301725 T
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47590073 1 +  50890351 T
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e rheMac3.chr19              60633451 1 +  64156825 I

a score=197263.000000
s hg38.chr19_GL949751v2_alt    898453 92 +   1002683 GACAAAGAATTTCGGTGCGACTTGGGGTACTGTGGTGCCTGCTCTATCATCATGCTTCAGCA------GGAAATGTGGGTGAATAGTGCCTGGTGGCA
s panTro4.chr19              59893950 92 +  63644993 GACAAAGAATTTCGGTGCGACTTGGGGTACTGTGGTGCCTGCTCTATCATCATGCTTCAGCA------GGAAATGTGGGTGAATAGTGCCTGGTGGCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822886 92 +  60714840 GTCAAAGAATTCCAGTGCGACTTGGGGTACTGTGGAGCCTGCTCTATCATCATGCTTCAGCA------GGAAATGTGGGTGAACAGTGCCTGGTGGCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336500 92 - 106955855 GACAAAGAATTCCGGTGCGACTTGGGGCACTGTGGAGCCTGCTCCATCATCATGCTTCAGCG------GGAAATGTGGATGAACAGTGCctggtggca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60633452 91 +  64156825 GACAAAGAATTCCAGTGAGACTGGGGGCACTGTGGAGCCTGCTGTCT-GTCATGCTTCAGCA------GGAAATGGGGGTGAATAGTGCTTggtggca
i rheMac3.chr19             I 1 I 3
s macFas5.chr19              55774476 91 +  59248254 GACAAAGAATTCCAGTGAGACTGGGGGCACTGTGGAGCCTGCTGTCT-GTCATGCTTCAGCA------GGAAATGGGggtgactagtgcttggtggca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878838 97 +  51301725 GACAAAGAATTCCAGTGAGACTGGGGGCACTGTGGAGCCTGCTGTCT-GTCATGCTTCAGCAGGAAATGGAAATGGGGGTGAATAGTGCTTGGTGGCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47590074 91 +  50890351 GACAAAGAATTCCAGTGAGACTGGGGGCACTGTGGAGCCTGCTGTCT-GTCATGCTTCAGCA------GGAAATGGGGGTGAACAGTGCTTggtggca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I

a score=3075.000000
s hg38.chr19_GL949751v2_alt    898545 3 +   1002683 TGG
s panTro4.chr19              59894042 3 +  63644993 TGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822978 3 +  60714840 TGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336592 3 - 106955855 tgg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55774567 3 +  59248254 cga
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878935 3 +  51301725 CGA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47590165 3 +  50890351 cga
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e rheMac3.chr19              60633543 3 +  64156825 I

a score=9292.000000
s hg38.chr19_GL949751v2_alt    898548 12 +   1002683 CAGGTAAAGAAA
s panTro4.chr19              59894045 12 +  63644993 CAGGTAAAGAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822981 12 +  60714840 TGGGTAAGGAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103336595 12 - 106955855 tgggtaaagaaa
i nomLeu3.chr10             C 0 I 608
s chlSab2.chr6               47590168 12 +  50890351 cgggtaaagaaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e papAnu2.chr19              47878938  0 +  51301725 C
e macFas5.chr19              55774570  0 +  59248254 C
e rheMac3.chr19              60633543  3 +  64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt    898560 1 +   1002683 T
s panTro4.chr19              59894057 1 +  63644993 T
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822993 1 +  60714840 T
i ponAbe2.chr19             C 0 C 0
s chlSab2.chr6               47590180 1 +  50890351 t
i chlSab2.chr6              C 0 T 3383
e canFam3.chr1               20044881 62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103336607 608 - 106955855 I
e papAnu2.chr19              47878938 0 +  51301725 C
e macFas5.chr19              55774570 0 +  59248254 C
e rheMac3.chr19              60633543 3 +  64156825 I

a score=77455.000000
s hg38.chr19_GL949751v2_alt    898561 298 +   1002683 Gttttgttttgtttttttttttgagacagtcttgctctgtcacccaagctggagtgcagtggcgcaatctcggctcactgcaagctccatctcccgggttcacgccatt---ctgcctcagcctccccagtagctgggactacaggcgcccgccacacgcccggctaattttttgtatttgtagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttatgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccG
s panTro4.chr19              59894058 296 +  63644993 Gtttttgttt--ttttttttttgagacagtcttgctctgtcacccaagctggagtgcagtggcgcgatctcggctcactgcaagctccgtctcccgggttcacgccatt---ctgcctcagcctccccagtagctgggactacaggcgcctgccacacgcccggctaaatttttgtatttgtagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttatgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56822994 299 +  60714840 Gttttttttt--ttttttttttgagacagtcttgctctgtcgcccaggctggagtgcagtggcgcaatctcagatcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccacacgcccagctagttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccgcctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccG
i ponAbe2.chr19             C 0 C 0
e canFam3.chr1               20044881  62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103336607 608 - 106955855 I
e chlSab2.chr6               47590181 3383 +  50890351 T
e papAnu2.chr19              47878938   0 +  51301725 C
e macFas5.chr19              55774570   0 +  59248254 C
e rheMac3.chr19              60633543   3 +  64156825 I

a score=481905.000000
s hg38.chr19_GL949751v2_alt    898859 387 +   1002683 Cgggtaaagaaatttatgaagacaatcgtaggtaaaggaaggcagatttattggagaaagtaggaaaagacattggcagagagaccccagcgggcaggttgtcatgag--tagctcactgccaggagaccaaagcttcctgcagattttatagaatagggcttgggctgattgataat-----gtcaacagggggtttaacttgcggtcttctttcagcagaagtgtttgataaactgaggcgtttcatggcaaacagggagtttgtg---agctctgtgtgtgatctggccaggaaggccaaacatcttgggccg-tatctcctggaccataaaagcagacctggcccagtgcagtggttcatgcctgcaatcccagcactttgggaggctgaggtg
s panTro4.chr19              59894354 389 +  63644993 Cgggtaaagaaatttatgaagacaatcgtaggtaaaggaaggcagatttattggagaaagtaggaaaagacattagcagagagactccagcgggcaggttgtcatgagagtagctcactgccaggagaccaaagcttcctgcagattttatagaatagggcttgggctgattgataat-----gtcaacagggggtttaacttgcagtcttctttcagcagaagtgtttgataaactgaggcgtttcatggcaaacagggagtttgtg---agctctgtgtgtgatctggccaggaaggccaaacatcttgggccg-tatctcctggaccataaaagcagacctggcccagtgcagtggttcacgcctgtaatcccagcactttgggaggctgaggtg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56823293 390 +  60714840 CAggtaaagaaatttatgaagacaatcgtaggtaaacaaaggcagatttattggagaaagtaggaaaagacattggcagagagaccacagcaggcaggttgtcatgagagaagctcactgccaggagaccaaagcttcctgcagattttatagaatagggcttgggctgattgataat-----gtcaacagggggtttaacttgcagtcttctttcagcagaggtgtttgataaactgaggcgtttcatggcaagcagggagtttgtg---agctctgtgtgtgatctggccaggaaggccaaacatcttgggccgtTATCTCCTGGACCATAAAAGCAGACCTggcccagtgcagtggttcatgcctgtaatcccagcacttagggaggccgaggtg
i ponAbe2.chr19             C 0 I 521
s rheMac3.chr19              60633546 392 +  64156825 cgggtaaagaaatttatcaagacaatcgtatgtaaagaaaggcagatttattggagaaagtaggagaagacattggc----agaccacagcaggcaggctgtcacgggagaaactcactgccaggagaccacagcttcctgcagattttatagaatagggcttgggctgattgataaggtcaagtcaacaggcggtttaacttgccatcttccttcagcagacatgtttgataaactgaggcgtttcatggcaagcagggagtttgtgagcagctgtgtgtgtgatctggtcaggaaggctaaacatcttggacca-tatctcctggaccataaaagcagacctggcccggcacagtggttcaca-ctgtaatcccagcactttgggaggctgaggtg
i rheMac3.chr19             I 3 C 0
s macFas5.chr19              55774570 392 +  59248254 cgggtaaagaaatttatcaagacaattgtatgtaaagaaaggcagatttattggagaaagtaggagaagacattggc----agaccacagcaggcaggctgtcacgggagaaactcactgccaggagaccacagcttcctgcagattttatagaatagggcttgggctgattgataaggtcaagtcaacaggcggtttaacttgccatcttccttcagcagacatgtttgataaactgaggcgtttcatggcaagcagggagtttgtgagcagctgtgtgtgtgatctggtcaggaaggctaaacatcttggacca-tatctcctggaccataaaagcagacctggcccggcacagtggttcaca-ctgtaatcccagcactttgggaggctgaggtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47878938 393 +  51301725 CGGGTAAAGAAATTTATCAAGACAATcataggtaaagaaaggcagatttattggAGAAAGTAGGAGAAGACATTGGC----AGACCACAGCAGGCAGGCTGTCACGAGAGAAGCTCACTGCCAGGAGACCACAGCTTCCTGCAGATTTTATAGAATAGGGCTTGGGCTGATTGATAAGGTCAAGTCAACAGGCGGTTTAACTTGCCATCTTCCTTCAGCAGACGTGTTTGATAAACTGAGGCGTTTCATGGCAAGCAGGGAGTTTGTGAGCAGCTGTGTGTGTGATCTGGTCAGGAAGGCTAAACATCTTGGACCA-TATCTCCTGGACCATAGAAGCAGACCTGGCccggcgcagtggttcacacctgtaatcccagcactttgggaggctgaggtg
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20044881  62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103336607 608 - 106955855 I
e chlSab2.chr6               47590181 3383 +  50890351 T

a score=194839.000000
s hg38.chr19_GL949751v2_alt    899246 234 +   1002683 ggtggatcatctgaggtcagcagttttagactggcctggccaacatggcgaaaccccatctctactaaaaatacaaaaattagcctagacgcagtggcacatgcctgtaattccagttacttgggaagctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagattgcgccactgcactccagcctgggcaacagagtgagactgtctcaaacaga----------
s panTro4.chr19              59894743 234 +  63644993 ggtggatcacctgaggtcagcagttctagactggcctggccaacatggcgaaaccccgtctctactaaaaatacaaaaattagcctagacgcagtggcacatgcctgtaattccagttactcgggaagctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagattgcgccactgcactccagcctgggcaacagagtgagactgtctcaaacaga----------
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60633938 241 +  64156825 ggtggatcacctgaggtcagtagttctagaccggcctggccaacatgacgaaaccccgtctctactaaaaatacaaaaattagcc-agacgcagtggcgcatgtctataattccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagattgcgccactgcattccagcctgggcaac--agtgagactgtctcaaaaaaaaaaaaaaaaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55774962 241 +  59248254 ggtggatcacctgaggtcagtagttctagaccggcctggccaacatgacgaaaccccgtctctactaaaaatacaaaaattagcc-agacgcagtggcgcatgtctgtaattccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagattgcgccactgcattccagcctgggcaac--agtgagactgtctcaaaaaaaaaaaaaaaaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47879331 240 +  51301725 ggtggatcacctgaagtcagtagttctagaccggcctggccaacatgacgaaaccctgtctctactaaaaatacaaaaattagcc-cgacgcagtggctcatgtctgtaatcccagctactcgggaggccgaggcaggagaatcacttgaacccgggaggcggaggttgtagtgagccaagattgccccactgcactccagcctgggcaac--agtgagactgtctc-aaaaaaaaaaaaaaaa
i papAnu2.chr19             C 0 C 0
e canFam3.chr1               20044881  62 - 122678785 I
e ponAbe2.chr19              56823683 521 +  60714840 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103336607 608 - 106955855 I
e chlSab2.chr6               47590181 3383 +  50890351 T

a score=74384.000000
s hg38.chr19_GL949751v2_alt    899480 70 +   1002683 cctatagctgacctgtttcctcttgtttgtatgccctgaaccatggaggaaagcttatttatttatttta
s panTro4.chr19              59894977 70 +  63644993 cctatagctgacctgtttcctcttgtttgtatgccctgaaccatggaggaaagcttatttatttatttta
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60634179 62 +  64156825 cctatagctgacctgtttcctcttgtttgtatgttctaaaccatggaagaaagcttgttttt--------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55775203 62 +  59248254 cctatagctgacctgtttcctcttgtttgtatgttctaaaccatggaagaaagcttgttttt--------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47879571 62 +  51301725 cctgtagctGACCTGTTTCCTCTTGTTTGTATGTTCTAAACCATGGAAGAAAGCttgtttta--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47586798 62 +  50890351 CCTATAGCTGACCTGTTTCCTCTTGTTTGTATGTTCTAAACCATGGAAGAAAGCttgtttta--------
i chlSab2.chr6              T 3383 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e ponAbe2.chr19              56823683 521 +  60714840 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103336607 608 - 106955855 I

a score=150873.000000
s hg38.chr19_GL949751v2_alt    899550 120 +   1002683 ttgag--atggagtcttgctctgttgcccagggtggagtgcagtagtgcgatctcttactacaacctccatctcccaggttcaagcaattctcgagcctcttggcctcccaagtagctgaga
s panTro4.chr19              59895047 120 +  63644993 ttgag--atggagtcttgctttgttgcccagggtggagtgcagtagtgcgatctcttactacaacctgcacctcccaggttcaagcaattctcgagcctcttggcctcccaagtagctgaga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56824204 120 +  60714840 ttgag--atggagtcttgctctgttgcccagggtggagtgcagtagtgtgatctcttactgcaacctccacctcccaggttcaagcaattctcgagcctctcggcctcccaagtagctgaga
i ponAbe2.chr19             I 521 C 0
s rheMac3.chr19              60634241  86 +  64156825 ttgag--atggagtattgctctgttgcccaggctggagcgctg------gatctcttactgcaac-------------------------ctcgcgtctctcagcctcccaagtagctg---
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55775265  86 +  59248254 ttgag--atggagtattgctctgttgcccaggctggagcgctg------gatctcttactgcaac-------------------------ctcgcgtctctcaacctcccaagtagctg---
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47879633 111 +  51301725 ttgag--atggagtattgctctgttgcccaggctggagcgctg------gatctcttactgcaacctccacctcccaggttcaagcaattctcacgcctctcagcctcccaagtagctg---
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47586860 113 +  50890351 ttgagatatggagtattgctctgttgcccaggctggagcgctg------gatctcttactgcaacctccacctcccaggttcaagcaattctcgcacctctcagcctcccaagtagctg---
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20044881  62 - 122678785 I
e calJac3.chr22              45941225 398 +  49145316 I
e nomLeu3.chr10             103336607 608 - 106955855 I

a score=116766.000000
s hg38.chr19_GL949751v2_alt    899670 64 +   1002683 ttacaggcatgcgccaccacgcctggctaatttttgcatttttagtagagatggggtttctgtg--
s panTro4.chr19              59895167 64 +  63644993 ttacaggcatgcgccaccacgcctggctaatttttgcatttttagtagagatggggtttctgtg--
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56824324 64 +  60714840 ttacaggcgtgtgccaccacgcctggctaatttttgcatttttagtagagatggggtttctgtg--
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60634327 55 +  64156825 ---------tgcaccactacgcctggctactttttgcatttttagtaaagacggggtttctctg--
i rheMac3.chr19             C 0 I 2
s macFas5.chr19              55775351 55 +  59248254 ---------tgtaccactacgcctggctactttttgcatttttagtaaagacggggtttctctg--
i macFas5.chr19             C 0 I 2
s papAnu2.chr19              47879744 55 +  51301725 ---------tgcaccactacgcctggctactttttgcatttttggtaaagacggggtttctctg--
i papAnu2.chr19             C 0 I 2
s chlSab2.chr6               47586973 55 +  50890351 ---------tgcaccactacgcctggctactttttgcatttttagtaaagacggggtttctctg--
i chlSab2.chr6              C 0 I 2
s calJac3.chr22              45941623 66 +  49145316 ttaaaggctcacaccaccacacttggctaatttttgtatttttagtagatatggagtttctccatg
i calJac3.chr22             I 398 C 0
e canFam3.chr1               20044881 62 - 122678785 I
e nomLeu3.chr10             103336607 608 - 106955855 I

a score=465551.000000
s hg38.chr19_GL949751v2_alt    899734 196 +   1002683 ttggccaggctggtctcgaactcctgagctcaagtgatccaccccacctcagcctcccaaagttctgggattataggcatgagc-----caccacacctggccggaaaacacatttgtagcttatttgctttatctgatcccgtgccccc-----cctcccccccgccccatcagcctgcctccttttctctaattgggactccac
s panTro4.chr19              59895231 200 +  63644993 ttggccaggctggtctcgaactcctgagctcaagtgatccaccc-acctcagcctcccaaagttctgggattataggcatgaac-----caccacacctggccggaaaacacatttgtagcttatttgctttatctgatcccgcgccccctgccccccccccccacccccatcagcctgcctccttttctctaattgggactccac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56824388 185 +  60714840 ttggccaggctggtctccaactcctgagctcaagtgatccaccc-acctcagtctcccaaagttctgggattataggcatgagc-----caccacacctggccggaaaacatatttgtagcttatttgctttatctgatt---------------ctcgccccccgccccatcagcctgactccttttctctaattgggactccac
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103337215 186 - 106955855 ttggccagggtggtctcgaactcctgagctcaagtgatccgccc-acctcagccttccaaagtgctgggattataggcatgagc-----caccacgcctggccAGaaaacatatttgtagcttgtttgctttatctgtttt--------------ctcccccggggtcctgtcagcctgactccttttccctaattgggactccac
i nomLeu3.chr10             I 608 C 0
s rheMac3.chr19              60634384 184 +  64156825 ttggccaggctggtctggagctcctgagctcaagtgatccgccc-acctcagcttcccaaagtgctgggattagagacatgagc-----cgtcacacctggccggaaaacatatttgtagctcacttgctttatctgtt----------------tctccagctggtcctgtcagcttcactccttttccctcactgggactccac
i rheMac3.chr19             I 2 C 0
s macFas5.chr19              55775408 184 +  59248254 ttggccaggctggtctggagctcctgagctcaagtgatccgccc-acctcagcttcccaaagtgctgggattagagacatgagc-----cgtcacacctggccggaaaacatatttgtagctcacttgctttatctgtt----------------tctccagctggtcctgtcagcttcactccttttccctcattgggactccac
i macFas5.chr19             I 2 C 0
s papAnu2.chr19              47879801 184 +  51301725 ttggccaggctggtctggaactcctgagctcaagtgatccgccc-acctcagcttcccaaagggctgggattagagacatgagc-----cgTCACACCTGGCCGGAAAACATACTTGTAGCTCACTTGCTTTATCTGTT----------------TCTCCAGCTGGTCCTGGTAGCTTCACTCCTTTTCCCTCATTGGAACTCCAC
i papAnu2.chr19             I 2 C 0
s chlSab2.chr6               47587030 189 +  50890351 ttggccaggctggtctggaactcccgagctcaagtgatccgccc-acctcagcttcccaaagtgctgggattagagacatgagcACTTTAGTCACACCTGGCTggaaaacatatttgtagctcacttgctttatctgtt----------------tctccagctggtcctgtcagcttcactccttttccctcactgggactccac
i chlSab2.chr6              I 2 C 0
s calJac3.chr22              45941689 180 +  49145316 ttggccaggctggtctcgaactccggagctcaagtgatctgccc-acctcggcctccgaaaatattgggattataggcatgagc-----cactgcaccGAGCTggaagac--atttataacttatttgctctatctgt-----------------tgccctctgggtcctgtcagc-tgactccttttccctgtttgggactccac
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20044881  62 - 122678785 I

a score=569806.000000
s hg38.chr19_GL949751v2_alt    899930 213 +   1002683 aGGAAATACACCTGATTTTGTGTCAATCTCACATGAGTTTGTATTTTGTAGCGTTTACAGAAACG---AAA---GGAAATGTCATCTGCCTGGGTAAA------GAAGTCT------TTAAAGGAAAAAAGCCAGGTCTGTACCATATCTTCCTGCAGGG---AGCTTGGGATCAGATTTCTCTTTATAAACTTGAAGTCCTCTTA--ACTTTCCTATGTAACACAAAGCatt------------tat
s panTro4.chr19              59895431 213 +  63644993 aGGAAATACACCTGATTTTGTGTCAAGCTCACATGAGTTTGTATTTTGTAGCGTTTCCAGAAACG---AAA---GGAAATGTCATCTGCCTGGGTAAA------GACGTCT------TTAAAGGAAAAAAGCCAGGTCTGTACCATATCTTCCTGCAGGG---AGCTTGGGATCAGGTTTCTCTTTATAAACTTGAAGTCCTCTTA--ACTTTCCTATGTAACACAAAGCATT------------TAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56824573 220 +  60714840 GGGAAATACACCTGATTTTGTGTCACGCTCACATGAGTTTGTATTTTGTAGCATTTACAGAAACC---AAAGAGGGAAATGTCACCTGCCTGGGTAAA------GAAGTCT------TTAAAGGAGAAAAGCCAGGTCTGTACCATATCTTCCTGCAGTG---AGCTTGGGATCAGGTTTCTCTTTATAAACTTGAAGTCCTCTTA--ATTTTCCTATGTAACACAAAGCATTtat--------gtat
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103337401 212 - 106955855 aGGAAATACACCTGATTTTGTGTCAAGCTCACATGAGTTTGTATTTTGTAGCGTTTACAGAAACG---GAG---GAAGATGTCACCTGCCTGACTAAA------GAAGTCT------TTAAAGGAGAAAAGCCAGGTCTGTACCATATCTTCCTGCAGTG---AGCTTGGGATCAAGTTTCTCTTTATAAACTTGAAGTCCTCTTA--ACTTTCCTATGTGACACAAAGCAT-------------TAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60634568 228 +  64156825 aGGAAATACACCTGATTTTGTGTCACGTTCACATGAGTTTGTATTTTGTAGAGTGCACAGAAACA---GAG---GAAGACGTCACCGTCCTGACT---------GAAGTCTTCAAAGTCAAAGGAGAAAAGTCAGGTCTGTACTGTATCTTCCTGCAGTG---AGGTTGGGATCAGGTTTCTCTTTATAAACTTGAAGTCCTCTTA--ACTTTCCTATGTAACACAAAGCGtgtatgtatgtacgtgt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55775592 228 +  59248254 aGGAAATACACCTGATTTTGTGTCACGTTCACATGAGTTTGTATTTTGTAGAGTGCACAGAAACA---GAG---GAAGACGTCGCCGTCCTGACT---------GAAGTCTTCAAAGTCAAAGGAGAAAAGTCAGGTCTGTACCGTATCTTCCTGCAGTG---AGGTTGGGATCAGGTTTCTCTTTATAAACTTGAAGCCCTCTTA--ACTTTCCTATGTAACACAAAGCGtgtatgtatgtatgtgt
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47879985 228 +  51301725 AGGAAATACACCTGATTTTGTGTCACGTTCACATGAGTTTGTATTTTGTAGAGTGCACAGAAACA---GAG---GAAGACGTCACCGTCCTGACT---------GAAGTCTTCAAAGTCAAAGGAGAAAAGTCAGGTCTGTACCGTATCTTCCTGCAGTG---AGGTTGGGATCAGGTTTCTCTTTATAAACTTGAAGTCCTCTTA--ACTTTCCTATGTAACACAAAgcgtttatgtatgtatgtat
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47587219 228 +  50890351 aGGAAATACACCTGATTTTGTGTCACGTTCACATGAGTTTGTATTTTGTAGAGTGCACAGAAACA---GAG---GAAGACGCCACCGTCCTGACT---------GAAGTCTTCAAAGTCAAAGGAGAAAAGTCAGGTCTGTACTATATCTTCCTGCAGTG---AGGCTGGGATCAGGTTTCTCTTTATAAACTTGAAGTCCTCTTA--ACTTTCCTATGTAACACAAAGCGtgtatgtatgtatgtat
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45941869 196 +  49145316 aGGAAATTCACCTGTTTTTGTGTCAAGCTTACATGAGTTTGTACTTTTTCGCGTTTACAGAAACA---GAG---GAAGATGTCAGCAGCCTGAGAGAAGC---TGAAGCCT------TGAAAAAAGAAATGCCAGGTCTGTATCCTGTCTTCCTGGGGTGAGCAGCTTGGGGTCAGGTTTCGCTTTCTAAACTTCAAGTCCttttt--ttttt-----------------------------------
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20044943 215 - 122678785 AAGAAATTCACAT--TTTTGTGTCATGCTCACTTTAATTTGTATTTTGCAGCATTTACACAAGTACAGGAA---GAAGATGTCACAAATCCAGAAGAAGCAAAGGAAGGTT------TGAAAGGAGAAAAGCCAGGTCTGTATCCTATCTTCCTGGA-TG---AGCTTAGTGTCAGGTAGTTCTTGATAACTT-----CTCTATTATCATGTTCTTACTTGACAC-AGGTATTTTT------------
i canFam3.chr1              I 62 C 0

a score=844500.000000
s hg38.chr19_GL949751v2_alt    900143 324 +   1002683 ttatgtatgtatgt----atCgagacggagttttgctcttgttgcccaggctggagtgccgtggcgtgatctcgactcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgactggctaattttt-tatttttagtagagacaaggtttcttcatgttggtcaggctggtgttgaactcccaatgtcaggtgatctgcctgcctcgacctcccaaagggctgggattacaggcatgagccactgtgcccggcc---------------------------AACACAAGGCATTTTGTTATTTTGG
s panTro4.chr19              59895644 324 +  63644993 TTATGTATGTATGT----ATCgagacggagttttgctcttgttgcccaggctggagtgccatggcgtgatctcgactcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgactggctaattttt-tgtttttagtagagacaaggtttctttatgttggtcaggctggtgttgaactcccaatgtcaggtgatgtgcctgcctcgacctcccaaagggctgggattacaggcatgggccactgtgcccggcc---------------------------AACACAAGGCATTTTGTTATTTTGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56824793 324 +  60714840 gtatgtatgtatgt----atCgagacggagttttgctcttgttgtccaggctggagtgccgtggcatgatcttgactcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctggaattacaggcctgcgccaccatgaccggctaattttt-aatttttagtagagacaaggtttcttcatgttggtcaggctggtcttgaactcccaatgtcaggtgatctgcctgcctcggcctcccaaagggctgggattacaggcatgagccaccgcgcccggcc---------------------------AACACAAGGCATTTTGTTATTTTGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103337613 324 - 106955855 TGATGTATGTATGT----ATCgagatggagtttcgctcttattgcccaggctggagtgccgtggcgtgatctcgactcactgcaacctctgcctcccaggttcaagcgattcgcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccatgaccggctaatgttt-tatttttagcagagacaaggtttcttcatgttggtcaggtcggtcttgaactcccaacctcaggtgatctgcctgcctcagcctccgaaagggctgggattacaggcatgagccaccgcgcccggcc---------------------------AACACAAGGCATTTTGTTATTTTGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60634796 319 +  64156825 gtatatatgtatgt----attgagacacagtttcactcttgttgcccaggctggagtgccatggcatgatctctgttcactgcaacctccgtctcccaggttcaagcaatt---ctgcctcagcctcccgagtagctgggaatacaggcgtgctccaccacacccagctaacttat---tttttagtagagacaaggtttcttcatgttggtcaggctggtcttgaactcccaacctcaggtgatcggcctgcctcggcctcccaaagggctgggattacaagtgtgagcccccgcgcccagcc---------------------------AACACAAGACATTTTGTTGTTCTGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55775820 319 +  59248254 gtatatatgtatgt----attgagacacagtttcactcttgttgcccaggctggagtgccatggcatgatctctgttcactgcaacctccgtctcccaggttcaagcaatt---ctgcctcagcctcccgagtagctgggaatacaggcgtgctccaccacacccagctaacttat---tttttagtagagacaaggtttcttcatgttggtcaggctggtcttgaactcccaacctcaggtgatcggcctgcctcggcctcccaaagggctgggattacaagtgtgagccaccgcgcccagcc---------------------------AACACAAGACATTTTGTTGTTCTGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47880213 323 +  51301725 gtatatatgtatgtatgcattgagacacagtttcactcttgttgcccaggctggagtgccatggcatgatctctgctcactgcaacctccgtcttccaggttcaagcaatt---gtgcctcagcctcccaagtagctgggaatacaggtgtgctccaccacacccagctaacttat---tttttagtagagacaaggtttcttcatgttggtcaggctggtgttgaactcccaacctcaggtgatcggcctgcctcggcctcccaaagggctgggattacaagtgtgagccaccgcgcccagcc---------------------------aacacaaGGCATTTTGTTGTTCTGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47587447 319 +  50890351 gtatatatgtatgt----attgagacacagtttcactcttgttgcccaggctggagtgccatggcatgatctctgctcactgcaacctccgtctcccaggttcaagcaatt---gtgcctcagcctcccgagtagctgggaatacaggcgtgctccaccacacccagctaacttat---tttttagtagagacaaggtttcttcatgttggtcaggctggtcttgaactcccaacctcaggtgatctgcctgcctcggcctcccaaagggctgggattacaagtgtgagccaccgcgcccagcc---------------------------AACACAAGGCATTTTGTTGTTCTGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45942065 321 +  49145316 -------------t----a-----atggagtctcactc-tgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgcctcctgggttcaaagaattct-ctgcctcagcctcccaagaagctgggactataggc--gcaccaccacgcccagctaatttttgtatttttagtagaggtggggtttcgccatgttggtcaggctggtcttgaacttctgaccc---gtgaactgcccgcctccgcctcccaacgtgctgggattacaggtgtgagccgccgcactcggccTCAAGTCCTCTTTTTACGCTCCTGTGTAACGGAAAGCA------TGCTTTGT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20045158   0 - 122678785 C

a score=980283.000000
s hg38.chr19_GL949751v2_alt    900467 305 +   1002683 TTTTCCCTATGGGTAACTGATTGCATC----CTCTCTCCCTTCCCTCCTCACCAATGATAAAGACAAAGACAATAGGTGCAGGTATATATTGAAGACGAAGTTCCGGGAGATGTGGAAGAG------CTGGCCTGGAGATAGCAAAGAGGTCCAGGTTATGGCTGAGAGATACAAGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCATACACGGTGGTGCTGTATGGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCCAGAAACTAATGCTAGACTGGGCAGAGGACAACCTCATCC
s panTro4.chr19              59895968 305 +  63644993 TTTTCCCTGTGGGTAACTGATTGCATC----CTCTCTCCCTTCCCTCCTCACCAATGATAAAGACAAAGACAATAGGTGCAGGTATATATTGAAGACGAAGTTCCGGGAGATGTGGAAGAG------CTGGCCTGGAGACAGCAAAGAGGTCCAAGTTATGGCTGAGAGATACAAGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCATACACGGTGGTGCTGTATGGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCCAGAAACTAATGCTAGACTGGGCAGAGGACAACCTCATCC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56825117 309 +  60714840 TTTTCCCTATGGGTAACTGATTGCATCCTCTCTCTCTCCCTTCCCTCCTCACCAATGATAAAGACAAAGACAATAGGTACAGGTATATATTGAAGACGAAGTTCCGGGAGATGTGGAAGAG------CTGGCCTGGAGATAGCAAAGAGGTCCAGGTTATGGCTGAGAGATACAAGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCATACACGGTGGTGCTGTATGGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCCAGAAACTAATGCTAGACTGGGCAGAGGACAACCTCATCC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103337937 302 - 106955855 TTTTCCCTATGGGTAACTGATTGCATCCTCTGTCTCTCCCTTCCCTCCTCACCAATGAT------AAAGACAATAGGTACAGGTATATATTGAAGACGAAGTTCCGGGAGATGTGGAAGAG------CTGGCCTGGCGATAGCAAAGAGGTCCAGGTTATGGCTGAGAGATACAAGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCCTACACGGTGGTGCTGCACGGTCCTGCA-GCCTTGGGAAAACCACGCTGGGCCCAGAAACTAATGCTAGACT-GGCAGAGGACAACCTCACCC
i nomLeu3.chr10             C 0 M 100
s rheMac3.chr19              60635115 297 +  64156825 TTTTCCCTATGGATAACTGATTACATC------CTCTCCCTTCCCTCCTCACCAAAGAT------AACGAGGATAGGTACAGGCTTATACTGAAGACGAAGTTCCGGGAGATGTGGCAGAG------CTGGCCTGGAGACAGCAAAGAGGTCCATGCTATGGCTGAGAGATACAGGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCACACACAGTGGTGCTGCACAGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCAATAAACTAATGCTGGACTGGACAGAGGATGACCTCATCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55776139 299 +  59248254 TTTTCCCTATGGATAACTGATTACATC----CTCTCTCCCTTCCCTCCTCACCAAAGAT------AACGAGGATAGGTACAGGCTTATACTGAAGACGAAGTTCCGGGAGATGTGGCAGAG------CTGGCCTGGAGACAGCAAAGAGGTCCATGTTATGGCTGAGAGATACAGGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCACACACAGTGGTGCTGCACAGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCAATAAACTAATGCTGGACTGGACAGAGGACAACCTCATCC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47880536 299 +  51301725 TTTTCCCTATGGATAACTGATTacatc----ctctctcccttccctcctcaccAAAGAT------AACGAGGATAGGTACAGGCTTATACTGAAGACGAAGTTCCGGGAGATGTGGCAGAG------CTGGCCTGGAGACAGCAAAGAGGTCCATGTTATGGCTGAGAGATACAGGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCACACACAGTGGTGCTGCACAGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCAATAAACTAATGCTGGACTGGACAGAGGACAACCTCATCC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47587766 299 +  50890351 TTTTCCCTATGGATAACTGATTACATC----CTCTCTCCCTTCCCTCCTCACCAAAGAT------AACGAGAATAGGTACAGGCTTATACTGAAGACGAAGTTCCGGGAGATGTGGCAGAG------CTGGCCTGGAGACAGCAAAGAGGTCCATGTTATGGCTGAGAGATACAGGATGCTGATCCCATTCAGCAACCCCAGGGTGCTTCCCGGGCCCTTCTCACACACCGTGGTGCTGCACAGTCCTGCAGGCCTTGGGAAAACCACGCT-GGCCAATAAACTAATGCTGGACTGGACAGAGGACAACCTCATCC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45942386 301 +  49145316 TTTTTGCTGTGAATTACCAATTGCATC--TTGTCTATTCCTTCCCTCCCCACTGAAGGG------AAAGAGGACAGGCACAGGAGCATACTGAAGATGAAGTTCCGGCAGATGTGGGAGGC------CTGGCCCGGAGCCAGCAGAGGGGTCCAAGCTGTGGCTCAGAGATACATGACTCTGATCCCATTCAGCAACCCCAGGATACTTCCCGGGCCCTTCCCACACACGGTGGTGCTCCACGGCCCTGCCGGCCTTGGGAAAACCACGCT-GGCCAAGAGATTAATGTTGGACTGGACAGAGGACAACCTCAGCC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20045158 305 - 122678785 TTTTCCTAATGAATAACCAGCTATATC----CTATTTCCAACCTCTTATCACTGAAGGT------AAACAAGATAAGTATATAAGTATATTGAAAGAGAAGGTCCAGCAAATGTGGAAGAAGAACTTTTGGCCTGGAGCCAGTGAAAACATTCACACTGTCACCCAGAAATATGAGACACTGATCCCATTCTGTAATCCTAAAATGCTTGCAGGACCATTTCCACACACGGTGGTGCTGCATGGTCCTGCGGGCGTTGGGAAGACCACTCT-GGCCAAGAAGTGCATGCTGGACTGGACAGAGGACAGCCTTGCAC
i canFam3.chr1              C 0 C 0

a score=281822.000000
s hg38.chr19_GL949751v2_alt   900772 92 +   1002683 ACAAATTCAAATATGCGTTCTACCTCAGCTGCAGGGAGCTCAGCCGCCTGGGCCCGTGCAGTTTTGCAGAG---CTGGTCTTCAGGGACTGGCCT-
s panTro4.chr19             59896273 92 +  63644993 ACAAATTCAAATATGCGTTCTACCTCAGCTGCAGGGAGCTCAGCCGCCTGGGCCCGTGCAGTTTTGCAGAG---CTGGTCTTCAGGGACTGGCCT-
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56825426 92 +  60714840 ACAAATTCAAATATGCGTTCTACCTCAGCTGCAGGGAGCTCGGCCGCCTGGGCCCGTGCAGTTTTGCAGAG---CTGATCTCCAAAGACTGGCCT-
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10              3649680 90 + 106955855 ACGG--TCAGATACGCGTTCTACCTCAGCTGCAAGGAGCTCAGCCGCATGGGCCCCTGCAGTTTTGCAGAG---CTGATCTCCAAAGACTGGCCT-
i nomLeu3.chr10             I 31972 I 1248
s rheMac3.chr19             60635412 92 +  64156825 AGAAATTCAAATACGCTTTCTACCTCAGCTGCAGGGAGCTCAGCCGCCTGGGCCCGTGCAGTTTTGCACAG---ATGGTCTTCAGGGACTGGCCT-
i rheMac3.chr19             C 0 C 0
s macFas5.chr19             55776438 92 +  59248254 AGAAATTCAAATACGCTTTCTACCTCAGCTGCAGGGAGCTCAGCCGCCTGGGCCCGTGCAGTTTTGCACAG---ATGGTCTTCAGGGACTGGCCT-
i macFas5.chr19             C 0 C 0
s papAnu2.chr19             47880835 92 +  51301725 AGAAATTCAAATATGCATTCTACCTCAGCTGCAGGGAGCTCAGCCGCCTGGGCCCGTGCAGTTTTGCAGAG---ATGGTCTTCAGGGACTGGCCT-
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6              47588065 92 +  50890351 AGAAATTCAAATACGCTTTCTACCTCAGCTGCAGGGAGCTCAGCCGCCTGGGCCCGTGCAGTTTTGCAGAG---ATGGTCTTCAGGGACTGGCCG-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22             45942687 92 +  49145316 ACAAATTCAAATACGCTTTCTACCTCAGCTGCAAAAGGCTCAGCCGCCTGGGCCTGTGCAGTTTTGCAGAG---CTGGTCTTCAGGGACTGGCCG-
i calJac3.chr22             C 0 C 0
s canFam3.chr1              20045463 92 - 122678785 AGACCTGCCCCACTGCCTTCTATCTCAGCTGCAAGGCGCTCAGCCGCAAGGGGATGTGCTCCTTCATAGAACTCCTGGCCC----AGAGTGCCCCA
i canFam3.chr1              C 0 C 0

a score=4250211.000000
s hg38.chr19_GL949751v2_alt    900864 1266 +   1002683 GAATTGCAGGATGACATTCCACACATCCTAGCCCAAGCACGGAAAATCTTGTTCGTGATTGACGGCTTTGATGAGCTGGGAGCCGCACCTGG------GGCGCTGATCGAGGACATCTGCGGGGACTGGGAGAAGAAGAAGCCGGTGCCCGTCCTCCTGGGGAGTTTGCTGAACAGGGTGATGTTACCCAAGGCCGCCCTGCTGGTCACCACGCGGCCCAGGGCCCTGAGGGACCTCCGGATCCTGGCGGAGGAGCCGATCTACATAAGGGTGGAGGGCTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGACGAGGACCAAGCCATGCGTGCCTTTGAGCTAATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCCCCCGCGGTGTGCTGGATCGTGTGCACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACCCGGTCCCCACCTGCCTCACCCGCACGGGGCTGTTCCTGCGTTTCCTCTGCAGCCGGTT------CCCGCAGGGCG------------CACAGCTGCGGGGCGCGCTGCGGACGCTGAGCCTCCTGGCCGCGCAGGGCCTGTGGGCGCAGACGTCCGTGCTTCACCGAGAGGATCTGGAAAGGCTCGGGGTGCAGGAGTCCGACCTCCGTCTGTTCCTGGACGGAGACATCCTCCGCCAGGACAGAGTCTCCAAAGGCTGCTACTCCTTCATCCACCTCAGCTTCCAGCAGTTTCTCACTGCCCTGTTCTACACCCTGGAGAAGGAGGAGGAAGAGGA--------TAGGGACGGCCACACCTGGGACATTGGGGACGTACAGAAGCTGCTTTCCGGAGTAGAAAGACTCAGGAACCCCGACCTGATCCAAGCAGGCTACTACTCCTTTGGCCTCGCTAACGAGAAGAGAGCCAAGGAGTTGGAGGCCACTTTTGGCTGCCGGATGTCACCGGACATCAAACAGGAATTGCTGCGATGCGACATAAG---TTGTAAGGGTG---GACA---TTCAACGGTGACAGACCTGCAGGAGCTCCTCGGCTGTCTGTACGAGTCTCAGGAGGAGGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACGTTGTGCCATCTTCATTCTGCGTCAAGCACTGTCGAAACCTGCAGAAAATGTCACTGCAGGTAAT---AAAGGAGAATCTCCCGGAGAATGTCACTGCGTCTGAATCAGACGCCGAGGTTGAGAGGTGAGAACCGT-----TTCACTCTACCAG-----TCGTTCCATCTTT
s panTro4.chr19              59896365 1266 +  63644993 GAATTGCAGGATGACATTCCACACATCCTAGCCCAAGCACGGAAAATCTTGTTCGTGATTGACGGCTTTGATGAGCTGGGAGCCGCACCTGG------GGCGCTGATCGAGGACATTTGCGGGGACTGGGAGAAGAAGAAGCCGGTGCCCGTCCTCCTGGGGAGTTTGCTGAACAGGGTGATGTTACCCAAGGCCGCCCTGCTGGTCACCACGCGGCCCAGGGCCCTGAGGGACCTCCGGATCCTGGCGGAGGAGCCGATCTACGTAAGGGTGGAGGGCTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGACGAGGACCGAGCCATGCGTGCCTTTGAGCTAATGAGGAGCAACGCGGACCTGTTCCAGCGGGGCTCGGCCCCCGCGGTGTGCTGGATCGTGTGCACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACCCGGTGCCCACCTGCCTCACCCGCACGGGGCTGTTCCTGCGCTTCCTCTGCAGCCGGTT------CCCGCAGGGCG------------CACAGCTGCGGGGCGCGCTGCGGACGCTGAGCCTCCTGGCCGCGCAGGGCCTGTGGGCGCAGACGTCCGTGCTCCACCGAGAGGATCTGGAAAGGCTCGGGGTGCAGGAGTCCGACCTCCGTCTGTTCCTGGACGGAGACATCCTCCGCCAGGACAGAGTCTCCAAAGGCTGCTACTCCTTCATCCACCTCAGCTTCCAGCAGTTTCTCACTGCCCTGTTCTACGCCCTGGAGAAGGAGGAGGAGGAGGA--------CAGGGACGGCCACACCTCGGACATTGGGGACGTACAGAAGCTGCTTTCCGGAGTAGAAAGACTCAGGAACCCCGACCTGATCCAAGCAGGCTACTACTACTTCGGCCTCGCTAACGAGAAGAGAGCCAAGGAGTTGGAGGCCACTTTTGGCTGCCGGATGTCACCGGACATCAAACAGGAATTGCTGCGATGCGACATAAG---CTGTAAGGGTG---GACA---TTCAACGGTGACAGACCTGCAGGAGCTCCTCGGCTGTCTGTACGAGTCTCAGGAGGAGGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAGGAAATATCCCTGCACTT---AAATGCAGTAGACGTTGTGCCATCTTCATTCTGCGTCAAGCACTGTCGAAACCTGCAGAAAATGTCACTGCAGGTAAT---AAAGGAGAATCTCCCGGAGAATGTCACTGCGTCTGAATCAGACGCCGAGGTTGAGAGGTGAGAACCGT-----TTCACTCTACCAG-----TCGTTCCATCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56825518 1266 +  60714840 GAATTGCAGGATGACATTCCACACATCCTAGCTCAAGCACAGAAAATCTTGTTCGTGATTGACGGCTTTGATGAGCTGGGAGCTGCACCTGG------GGCGCTGATCCAGGACATGTGCAGGGACTGGGAGAAGAAGAAGCCGGTGCCTGTCCTCCTGGGGAGTTTGCTGAACAGGTATATGTTACCCAAGGCCGCCCTGCTGGTCACCACGCGGCCCAGGGCACTGAGGGACCTCCGGTTCCTGGTGGAGGAGCCAATCTACATAAGGGTGGAGGGCTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGACGAGGACCAAGCCACGCGTGCCTTTGAGCTGATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGGTCGGCCCCCGCGGTGTGCTGGATCGTGTGCACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACACGGCCCCCACCTGCCTCACCCGCACGGGGCTGTTCCTGCGCTTCCTCTGCAGCCGGTT------CCCGCAGGGCG------------CACAGCTGCGGGGCGCGCTGTGGATGCTGAGCTTTCTGGCCGCGCAGGGCCTGTGGGCGCAGATGTCTGTGCTCCACCGAGAGGACCTGGAAAGGCTCAGGGTGCAGGAGTCCGACCTCCGTCTGTTCCTGGACGGAGACATCCTCCGCCAGGACACAGTCTCCAAAGGCTGCTACTCCTTCATTCACCTCAGCTTCCAGCAGTTTCTCACTGCGCTGTTCTACGCCCTGGAGAAGGAGGAGGAGGAGGA--------CAGGGACGGCCACGCCTGGGACATTGGGGACATACAGAAGCTGCTTTCCGGAGAAGAAAGACTCAGGAACCCCGACCTGATCCAAGCAGGATACTACTCCTTTGGCCTCGCTAACGAGAAGAGAGCTAAGGAGCTGGAGGCCACTTTTGGCTGCCGGATATCACCGGACATCAAACAGGAATTGCTGCAATGCGACATAAG---TTGTAAGGGTG---GACA---TTCAACGGTGACAGACCTGAAGGAGCTCCTTGGCTGTCTGTACGAGTCTCAGGAGGAAGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACGTTGTGCCATCTTCATTTTGCCTCAAGCACTGTCAAAACCTGCAGAAAATGTCACTGCAGGTAAT---ACAGGCAAATCTCCCGGAGAATGTCACTGCGTCTGAATCAGACGCTGAGGTTGAGAGGTAAGAACCGT-----TTCACTCTACCAG-----TCGTTCCATCTTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103338339 1266 - 106955855 GAATTGCAGGATGACATTCCACACATCCTAGCCCAAGCACAGAAAATCTTGTTCGTGATTGACGGCTTTGATGAGCTGGGAGCCCCACCTGG------GGCGCTGATCCAGGACATCTGCGGGGATTGGGAGAAGAAGAAGCCGGTGCCGGTCCTCCTGGGGAGTTTGCTGAAGAGGAGTATGTTACCCAAGGCCGGCCTGCTGGTCACCACGCGGTCCCGGGCCCTGAGGGATCTCCGGCTCCTGGCAGAGGAGCCGATCTACATAAGGGTGGAGGGCTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGACGAGGACCAAGCCATGCGTGCCTTTGAGCTGATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCCCCGGCGGTGTGCTGGATCGTGTGCACGACTCTGAAGCTGCAGATGGAGAAGGGCGAGGACCTGGCCCCCACCTGCCTCACCCGCACGGAGCTGTTCCTGCGCTTCCTCTGCAGCCGGTT------CCCGCAGGGCG------------CACAGCTGCGGGGCGCGCTGCGGAAGCTGAGCCTCCTGGCCGCGCAGGGGCTGTGGGCGCAGATGTCTGTGCTCCACCGAGAGGACCTGGAAAGGCTCGGGGTGCAGGAGTCCGACCTCCGCCCGTTCCTGGACGGACACATCCTCCGCCAGGACACAGTCTCGAAAGGCTGCTACTCCTTCATCCACCTCAGCTTCCAGCAGTTTCTCGCTGCGCTGTTCTATGCCCTggagaaggaggaggaggagga--------CAGGGACGGCCACGCCTGGGACATTGGGGACGTACAGAAGCTGCTTTCCGGAGGAGAAAGACTGAGGAACCCCGACCTGATTCAAGCAGGATACTACTCCTTCGGCCTCGCTAATGAGAGGAGAGCCAAGGAGCTGGAGGCCACTTTTGGCTGCCGGATTTCACCAGACATCAAACAGGAATTGCTGCGATGCGACGTAAG---TTGTAAGGGTG---GACA---TTCAACGATGACAGACCTGAAGGAGCTCCTCGGCTGTCTGTACGAGTCTCAGGAGGAGGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACGTTGTGCCATCTTCATTCTGTGTCAAGCACTGTCGAAACCTGCAGAAAATGTCACTGCAGGTCAT---AAAGGCGGAGCTCCCAGAGAATGTCACTGTGTCTGAATCAGACGCTGAGGCTGAGAGGTAAGAACCGT-----TTCAGTTTACCAG-----TGGTTCCATAttt
i nomLeu3.chr10             M 100 I 819
s rheMac3.chr19              60635504 1261 +  64156825 GAACTGCAGGATGACATTCCACACATCCTAGCCCAAGCACATAAAATCTTGTTCGTGATTGACGGTTTCGATGAGCTGGGAGCCCCACCTGG------GGCGCTGATCCAGGACATCTGCGGGGACTGGGAGCAGCAGAAGCCGGTGCCGGTCCTCCTGGGGAGTTTGCTGAAGAGGAAGATGTTACCCAAGGCAACCCTGCTGGTCACCACGCGGCCCAGGGCCCTGAGGGACCTCCGGTTCCTGGCAGAGCAGCCCATCTACATAAGGGTGGAGGGGTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGACGAGGACCAAGCCATGCATGCCTTTGAGCTGATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCGCCCGCGGTGTGCTGGATCGTGTGTACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACCCGGCCCCCACCTGCCTCACCAGCACGGGGCTGTTCCTGCGCTTCCTCTGCAGCCAGTT------CCCGCAGGGCG------------CACAGCTCCGGGGCGCGCTGCGGGCGCTGAGCCTCCTGGCCGCGCAGAGTTTGTGGGCGCAGATGTCCGTGCTCCACGGAGAGGACCTGGAAAGCGCTGGGGTGCAGGAGTCCGACCTCCGCCTGTTCCTGGACAGAGACATCCTCCGCCAGGACGGAGTCGCCAAAGGCTGCTACTCCTTCATCCACCTCAGCTTCCAGCAGTTTCTCACTGCGCTGTTCTACGCCCTggaggaggaggaggaggagga--------CAGGGACGGCCATGCCTGGGACATTGGGGACGTGCAGAAGCTGCTTTCCGAAGAAGAAAGACTCAAGAACCCCGACCTGATCCAGGCAGGACGCTTCTTGGTCGGCCTGGCTAATGAGAAGAGAGTCAAGGAGTTGGAGGCCACCTTTGGCTGGCGGATGTCACCAGAGATCAAACAGGAATTGCTGCGATGCGACGTAAG---TCGTAAGAATG---GACA---TTTCACTGCGGCAGACCTGAGGGAGCTCCTCTGCTGTCTGTACGAGTCTCAGGAGGACGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACATTGCGCCGTCTTCATTCTGCTTCAAGCACTGTCAAAACTTGCAGAAAATGTCACTGCAGGTGATAAAAAAGGAGACGCTCCCGGAGAATGTCGCTGCGTCTGAATCCAACGCTGAGGCTGAGAGGTAGGAACC-T-----TTCACTCGACCGG-----TCGTTT-------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55776530 1261 +  59248254 GAACTGCAGGATGACATTCCACACATCCTAGCCCAAGCACAGAAAATCTTGTTCGTGATTGACGGTTTCGATGAGCTGGGAGCCCCACCTGG------GGCGCTGATCCAGGACATCTGCGGGGACTGGGAGCAGCAGAAGCCGGTGCCGGTCCTCCTGGGGAGTTTGCTGAAGAGGAAGATGTTACCCAAGGCAACCCTGCTGGTCACCACGCGGCCCAGGGCCCTGAGGGACCTCCGGTTCCTGGCAGAGCAGCCCATCTACATAAGGGTGGAGGGGTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGATGACGACCAAGCCATGCGTGCCTTTGAGCTGATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCGCCCGCCGTGTGCTGGATCGTGTGTACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACCCGGCCCCCACCTGCCTCACCAGCACGGGGCTGTTCCTGCGCTTCCTCTGCAGCCAGTT------CCCGCAGGGCG------------CACAGCTCCGGGGCGCGCTGCGGGCGCTGAGCCTCCTGGCCGCGCAGGGTTTGTGGGCGCAGATGTCCGTGCTCCACGGAGAGGACCTGGAAAGCGCTGGGGTGCAGGAGTCCGACCTCCGCCTGTTCCTGGACAGAAACATCCTCCGCCAGGACGGAGTCGCCAAAGGCTGCTACTCCTTCATCCACCTCAGCTTCCAGCAGTTTCTCACTGCGCTGTTCTACGCCCTggagaaggaggaggaggagga--------CAGGGACGGCCATGCCTGGGACATTGGGGACGTGCAGAAGCTGCTTTCCAGAGAAGAAAGACTCAAGAACCCCGACCTGATCCAGGCAGGACGCTTCTTGTTCGGCCTGGCTAATGAGAAGAGAGTCAAGGAGTTGGAGGCCACCTTTGGCTGGCGGATGTCACCAGAGATCAAACAGGAATTGCTGCGATGCGACGTAAG---TCGTAAGAATG---GACA---TTTCACGGCGGCAGACCTGAGGGAGCTCCTCTGCTGTCTGTACGAGTCTCAGGAGGACGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACATTGCGCCGTCTTCATTCTGCTTCAAGCACTGTCAAAACTTGCAGAAAATGTCACTGCAGGTGATAAAAAAGGAGACGCTCCCGGAGAATGTCGCTGCGTCTGAATCCAACGCTGAGGCTGAGAGGTAGGAACC-T-----TTCACTCGACCGG-----TCGTTT-------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47880927 1258 +  51301725 GAACTGCAGGATGACATTCCACACATCCTAGCCCAAGCACAGAAAATCTTGTTTGTGATTGACGGTTTTGATGAGCTGGGAGCCCCACCTGG------GGCGCTGATCCAGGACATCTGCGGGGACTGGGAGCAGCAGAAGCCAGTGCCGGTCCTCCTGGGGAGTTTGCTGAAGAGGAAGATGTTACCCAAGGCAACCCTGCTGGTCACCACGCGGCCCAGGGCCCTGAGGGACCTCCGGTTCGTGGCAGAGCAGCCGATCTACATAAGGGTGGAGGGGTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGACGAGGACCAAGCCATGCGTGCCTTTGAGTTGATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCGCCCGCGGTGTGCTGGATCGTGTGCACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACCCGGCCCCCACCTGCCTCACCAGCACGGGGCTGTTCCTGCGCTTCCTCTGCAGCCAGTT------CCCGCAGGGCG------------CACAGCTCTGGGGCGCGCTGCGGGCGCTGAGCCTCCTGGCCGCGCAGGGTTTGTGGGCGCAGATGTCCGTGCTCCACGGAGAGGACCTGGAAAGCGCTGGGGTGCAGGAGTCCGACCTCCGCCTGTTCCTGGACAGAGACATCCTCCGCCAGGACAGAGTCTCCAAAGGCTGCTACTCCttcatccacctcagcttccagcaGTTTCTCACTGCGCTGTTCTACGccctggaga---aggaggaggagga--------cagggacGGCCATGCCTGGGACATTGGGAACGTGCAGAAGCTGCTTTCCAGAGAAGAAAGACTCAAGAACCCCGACCTGATCCAGGCAGGACGCTTCTTGTTCGGCCTGGCTAATGAGAAGAGAGTCAAGGAGTTGGAGGCCACCTTTGGCTGCCGGATGTCACCAGAGATCAAACAGGAATTGCTGCGATGCGACATAAG---TCGTAAGAATG---GACA---TTCCACGGTGGCGGACCTGAAGGAGCTCCTCTGCTGTCTGTACGAGTCTCAGGAGGACGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACATTGCGCCGTCATCATTCTGCTTCAAGCACTGTCCAAACTTGGAGAAAATGTCACTGCAGGTGATAAGAAAGGAGACGCTCCCGGAGAATGTCGCTGCGTCTGAATCCAATGCTGAGGCTGAGAGGTAGGAACC-T-----TTCACTCGACTGG-----TCGTTT-------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47588157 1261 +  50890351 GAACTGCAGGATGACATTCCACACATCCTAGCCCAAGCACAGAAAATCCTGTTCGTGATTGACGGTTTCGATGAGCTGGGAGCCCCACCTGG------GGCGCTGATCCAGGACATCTGCGGGGACTGGGAGCAGCAGAAGCCGGTGCCGGTCCTCCTGGGGAGTTTGCTGAAGAGGAAGATGTTACCCAAGGCAAACCTGCTGGTCACCACGCGGCCCAGGGCCCTGAGGGACCTCCGGTTCCTGGCAGAGCAGCCAATCTACATAAGGGTGGAGGGGTTCCTGGAGTCGGACAGGAGGGCCTATTTCCTGAGACACTTTGGAGAGGAGGACCAAGCCATGCGTGCCTTTGAGTTGATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCGCCCGCGGTGTGCTGGATCGTGTGCACGACTCTGAAGCTGCAGATGGAGAAGGGGGAGGACCCGGCCCCCACCTGCCTCACCAGCACGGAGCTGTTCCTGCGTTTCCTCTGCAGCCAGTT------CCCGCAGGGCG------------CACAGCTCTGGGGTGCGCTGCGGGCGCTGAGCCTCCTGGCCGCACAGAGTTTGTGGGCGCAGATGTCCGTGCTCCATGGAGAGGACCTGGAAAGCGCTGGGGTGCAGGAGTCCGACCTCCGCCTGTTCCTGGACAGAGACATCCTCCGCCAGGACAGAGTCTCCAAAGGCTGCTACTCCTTCATCCACCTCAGCTTCCAGCAGTTTCTCACTGCGCTGTTCTACGCCCTggagaaggaggaggaggagga--------CAGGGACGGCCATGCCTGGGACATTGGGGACGTGCAGAAGCTGCTTTCCAGAGAAGAAAGACTCAAGAACCCCGACCTGATCCAGGCAGGACGCTTCTTATTCGGCCTGGCTAATGAGAAGAGAGTCAAGGAGTTGGAGGCCACCTTTGGCTGCCGGATGTCACCAGAGATCAAACAGGAATTGCTACAATGCGACATAAG---CCGTAAGAATG---GACA---TTCCACGGTGGCAGACCTGAAGGAGCTCCTCTGCTGTCTGTACGAGTCTCAGGAGGACGAGCTGGTGAAGGAGGTGATGGCTCAGTTCAAAGAAATATCCCTGCACTT---AAATGCAGTAGACATTGCGCCATCTTCATTCTGCTTCAAGCACTGTCCAAACTTGCAGAAAATGTCACTGCAGGTGATAAAAAAGGAGACGCTCCCGGAGAATGTCGCTGCATCTGAATCCAACACTGAGGCTGAGAGGTAGGAACC-T-----TTCACTCGACTGG-----TCGTTT-------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45942779 1266 +  49145316 GAATTGCAGGGTGACGTTCCAGACATCCTCGCCCAAGCACAGAAAATCCTGTTCGTGGTCGACGGCCTCGATGAGCTGGGAGCCCCACCCGG------GGCGCTGATCCACGACATCTGCGGGGACTGGCTGAAGCCGAAGCCGGTGCCGGTCCTCCTGGGGAGTTTGCTGAAGAGGAAGATGTTACCCAAGGCCGCCCTGCTGGTCACCACGCGGTCCTGGGCCCTGAGGGACCTCCGGCCCCTGATGGAGCAGCCCATCTACATAAGGGTGGAGGGGTTCCTGGAGGAGGACAGGAGGGCCTATTTCCTGACACACTTTGGAGAGGAGGACCAAGCCACGCGTGCCTTTGAGCTGATGAGAAGCAACGCGGCCCTGTTCCAGCTGGGCTCGGCGCCCGCGGTGTGCTGGATGGTGTGCACGAGTCTGAAGCTGCAGATGGAGAATGGGGAGGACCCGGCCACCACCTGCCACACCCGCACGGGGCTGTTCCTGCACTTTCTCTGCAGCCGCTT------CCCGAAGGGTG------------CACAGCTCGGGGGCACGCTGCGGGCGCTGAGCATCCTGGCTGCGCAGGGCCTGTGGGCGCAGATGTCCGTGTTCCACAGAGAGGACCTGGAGAGCTTCAGGGTGCAGGAGTCCGACCTCCGCCCGTTCCTGGACAGAGGCATCCTCCGCCAGGATAGAGACTCTAAAGACTGCTACTCCTTCCTCCACCTCAGCTTCCAGCAGTTTTTCACTGCGCTGTTCTACGCCCTGGAGA---AGGAGGAGGAGGA--------CAGGGACGGCCACGCCTGGGACATTGGGGATGTGCAGAGGCTGCTCTCTGGAGAAGAAAGAGTCCAGAACCCCGACCTGATCCAAGCGGGACACTTCTTATTCGGCCTTGCCAACGAGAAGAGAGCCGCGGAGTTGGAGACCACTTTCGGCTGCGTGATGTCACGGGAGATCAAACAGGAACTGCTGCGGTGCGACATCAT---TTGTGAGGAGGACAGATA---CTCAACCTTGACGGACCTGAAGGAGGTCTTACACTGTCTGTACGAGTCTCAGGAGGGGGAGCTGGTGAAGGCGGTGATGGCCCCGTTGAAAGAAATATCCGTGCACTT---AAGCGCTGCAGACATTGTGCCCTCTTCCTTCTGCCTCAAGCATTGTCGGAACTTGGAGAAAATGTCACTGCAGGTGAT---AAAGGCAAAGCTCCCGGAGAATGTCACTGCCTCTGAATCAGATGCTGAGGCTGAGAGGTAAGAACCGT-----TTCTCTCCACTGG-----TCCTTCCGTCTTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20045555 1308 - 122678785 GACCTGCAGGATGCCCTTGCACAGGTCCTGACCCAGGCACAGAAACTCCTGTTTGTCATTGATGCTTTCGAGGAGCTGCGCGTGCCCTCAGGGGTGGAGGCGCTGGTGCACGACCTGTGTGTGGACTGGAAGACACAGAGGCCTGCGTCCACCCTCCTGGGGAGCTTACTGAAGAGAAAGCTCTTACCCACGGCCGCCCTACTGGTCACCACACGGCCCGAGGCCCTAAGGGAGCTGCGGCTCATGGTGGAGCAGCCACTCTTCGTGGAGATCGAGGGGCTCTCAGAGTGTGACAGGAAGGCGTATTTCCTGAGACACTTTGGAGAGGAGGCTCAGGCGCTGCGTGCTTTCCACCTGATGAAGAGCAATGCAACGCTGTTCCAAATGGGCGCGGCACCCGCTGTGTGCTGGATGGTGTGCACCTGCCTGAAGCTGCAGATGGACGAGGGTGAGGACCCTGGCCCCACCTGCCAGACCACCACATCGTTGTTGCTGCGTTTCCTCTGCAGCCAGTTTGCGCCCGCGCAGGGCAGCTGTCTGGGGCTGCACCTCAGGTCTACTCTGCACGCTCTGTGCCTGCTGGCCACTGAGGGCGTGTGGACACAGACCTCAGTGTTTGATGGACATGACCTGCTCAGGCTGGGTGTGCATGAGTCTGACCTGCACCCTTTCCTGAACAGGAATATCCTCCAGAAGAGCAGAGACTGTGAGGGCTGCTACTGCTTCCTCCACCTGAGTGTCCAGCAGTTCCTGGCCGCTGCCCTCTACATTCTGGGGAGCCAGGACCACCAAGACCTTCCAGCAGGAA--GCCCTAGCTGGGATGCTGGGAATGTGCAGAGGCTCCTCTCCAAGGAAGAAGGACTCAAGAACCCCTACCTAGCCCCCGTGGGGCACTTCCTATTTGGCCTCACCAATGAAAAGAGGGCCAGGGAGCTGGGGATGACTTTTGGCTGCCTGGTGTCCACCAAGGTCAAGCAGGAACTGCTGGAATGCAGGGTAGGGTCTCCTGAGAACA---GACCCTTCTCCTCGGTGACAGACACGAAGGAGACTTTGCACTGTCTCTATGAATCCCAGGAGGAGCAGCTTGTGAAGGAAGCCATGGTCCAGGTGACAGAAGTGTCCCTGGTTTTCAAAGATACCTCAGACATCATGCATGCATCCTTTTGCCTCAAGCATTGTGAAAGCTTGCAGAAAATGTGGCTGCAGATAGA---AAAGGGGATGTTTCTGGAGAATGATGCTGTGTCAGAATCAGAGGACCAGGCTGACCGGTAAGAATCCTCACTGTTCACTCTGTTAGCTTGCTTTTTC-------
i canFam3.chr1              C 0 C 0

a score=5033.000000
s hg38.chr19_GL949751v2_alt    902130 2 +   1002683 AG
s panTro4.chr19              59897631 2 +  63644993 AG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56826784 2 +  60714840 AG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60636765 2 +  64156825 AA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55777791 2 +  59248254 AA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882185 2 +  51301725 AG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47589418 2 +  50890351 AG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45944045 2 +  49145316 AG
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20046863 2 - 122678785 AG
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             103339605 819 - 106955855 I

a score=141121.000000
s hg38.chr19_GL949751v2_alt   902132 49 +   1002683 CCTCATCCCATGCCCCCTTAGGAAGAGGCCAGAG---CCTCCTATGCACTGT
s panTro4.chr19             59897633 49 +  63644993 CCTCATCCCATGCCCCCTTAGGAAGAGGCCAGAG---CCTCCTATGCACTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56826786 49 +  60714840 CCTCATCCCATGCACCCTTAGGAAGAGGCCAGAG---CCTCCTATGCACTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10              3651018 49 + 106955855 TCCCATTCCACGCTCCACTAGGAAGAGGCCAGCG---TCTCCTGTGCCCTGT
i nomLeu3.chr10             I 1248 I 3527
s rheMac3.chr19             60636767 49 +  64156825 CCTCATCCCATGCGCCCTTAGGAAGAGGCCAGAG---CCTCCTATGTGCTGT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19             55777793 49 +  59248254 CCTCATCCCATGCGCCCTTAGGAAGAGGCCAGAG---CCTCCTATGTGCTGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19             47882187 49 +  51301725 CCTCATCCCATGCGCCCTTAGGAAGAGGCCAGAG---CCTCCTATGTGCTGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6              47589420 49 +  50890351 CCTCATCCCATGCGCCCTTGGGAAGAGGCCAGAG---CCTCCTATGTGCTGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22             45944047 48 +  49145316 CCTCATCCCAGGGCCCCTTAGGAGGAGGCCAGAG---CTTCCTGGG-ACTGT
i calJac3.chr22             C 0 C 0
s canFam3.chr1              20046865 48 - 122678785 CCTCATCCCCTGCG---TTAGAAACAGGGCAGAGTGTCCCCCCGCTCCCTT-
i canFam3.chr1              C 0 C 0

a score=117386.000000
s hg38.chr19_GL949751v2_alt    902181 54 +   1002683 GGCTTAGGGTCAGGAATTCCCTCTTGTTGGAC---TCtttgtttgttttt-------gttttga
s panTro4.chr19              59897682 54 +  63644993 GGCTTAGGGTCAGGAATTCCCTCTTGTTGGAC---TCtttgtttgttttt-------gttttga
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56826835 62 +  60714840 GACTTAGGGTCAGGAATTCCCTCTTGTTGGAC--ttttttgtttgttttttgttttgtttttga
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103340424 54 - 106955855 GGCTTAGGGTCAGGAATTCCCTCTTGTTGGAC--TCttttgtttgtttgt--------ttttgg
i nomLeu3.chr10             I 819 C 0
s rheMac3.chr19              60636816 46 +  64156825 GGCTTAGGCTCAGGAATTCCCTCTTTTTGGAC---TCtttttttttta---------------a
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55777842 52 +  59248254 GGCTTAGGCTCAGGAATTCCCTCTTTTTGGAC---tcttttttttttgtt-------tttt--a
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882236 53 +  51301725 GGCTTAGGGTCAGGAATTCCCTCTttttggac---tcttttttttttttt-------tttt-ga
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47589469 54 +  50890351 GGCTTAGGGTCAGGAATTCCCTCTTTTTGGAC---TCttttttttttttt-------tttttGA
i chlSab2.chr6              C 0 I 1410
s calJac3.chr22              45944095 55 +  49145316 GGCTTAGAGTCGGAAATTCCCTCTTGCTGGGC--ttcctttcttgttgct-------gttttga
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20046913 57 - 122678785 GGCATAGGATCAGAATTTTCTTCTTGCCAGAATTTCTTCTGCTAGCTTGC-------TCTTCAA
i canFam3.chr1              C 0 C 0

a score=10075.000000
s hg38.chr19_GL949751v2_alt    902235 7 +   1002683 gat-ggag
s panTro4.chr19              59897736 7 +  63644993 gat-ggag
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56826897 7 +  60714840 gat-ggag
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103340478 8 - 106955855 gataggag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60636862 7 +  64156825 gac-ggag
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55777894 7 +  59248254 gac-ggag
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882289 5 +  51301725 gac---ag
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45944150 7 +  49145316 gat-ggat
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20046970 7 - 122678785 GGT-GGGG
i canFam3.chr1              C 0 I 1762
e chlSab2.chr6               47589523 1410 +  50890351 I

a score=190724.000000
s hg38.chr19_GL949751v2_alt    902242 83 +   1002683 tcttgctctgtcgctcaggctggagc------gcagtggcgcgatcttggctccctgcaacctccgcctcccgggttcaagtgattctt
s panTro4.chr19              59897743 83 +  63644993 tcttgctctgtcgcccaggctggagc------gcagtggcgcgatcttggctcactgcaacctctgcctcccgggttcaagtgattttc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56826904 83 +  60714840 tcttgctctatcgcccaacctggagc------gcagtggcgtgatcttggctcactgcaacctctgcctcctgggttcaagcgattctc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103340486 83 - 106955855 tcttgctctgtcacccaggctggagc------gcagtggcatgatcttggctcactgcaacctctgcctcccgggttcaagcgattctc
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60636869 83 +  64156825 tcttgctctgtcacccaggctggagc------gcagtggcacgatcttggctcactgcaacctctgcctcccgggttcaagcgattctc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55777901 83 +  59248254 tcttgctctgtcacccaggctggagc------gcagtggcacgatcttggctcactgcaacctctgcctcccgggttcaagcgattctc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882294 83 +  51301725 tctcgctctgtcacccaggctggagc------gcagtggcacgatcttggctcactgcaacttctgcctcccaggttcaagcgattctc
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45944157 89 +  49145316 tcttgctctgttgcccatgctggagctggagtgcagtggtgggatctcagctcactgcaacctccacctcccaagttcaagcaattctc
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20046977 1762 - 122678785 I
e chlSab2.chr6               47589523 1410 +  50890351 I

a score=838699.000000
s hg38.chr19_GL949751v2_alt    902325 336 +   1002683 ctgcctcagcctcctgagtagctgggactacaggcgcctgccaccttgcccggctaatttttatattttcattagagacgggatctcagcatgttggccagtctggtcttgaactccgcctgacctcaggtgatccacctgcctcagcc-tccaaag---tgggattacaggcatgattcaccatgcccggccCAAATATAt-ttttttaagacagggtcttgctgtgttgctcaggctgga--------gtacagtggtgaaatc--agctcactgcatcctcaaacttctgggttcaagtgat-------------gttcctgagtacctgggatgacaggtattaagtgtgcaccatcatg
s panTro4.chr19              59897826 337 +  63644993 ctacctcagcctcctgagtagctgggactacaggcgcctgccaccttgcctggctaatttttatattttcattagagacgggatctcagcatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctgcctcagccttccaaag---tgggattacaggcatgattcaccatgcccggccCAAATATAt-tttttgaagacagggtcttgctgtgttgctcaggctgga--------gtacagtggtgaaatc--agctcactgcagcctcaaacttctgggttcaagtgat-------------gttcctgagtacctgggatgacagttattaaatgtgtaccatcatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56826987 339 +  60714840 ctgcctcagccttctgagtagctgggactacaggcgcccaccaccttgcttggctaatttttatattttcagtagagatgggatctcaccatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctgcctcagcctcccaaag---tgggattacaggcatgattcaccatgcccggccCAAATAttt-ttttttaagacagggtcttgctctgttgctcaggctgga--------gtacagtggcgcaatcatagctcactgcagcctcaaacttctgggttcaagtgtt-------------gttcctgagtacctgggatgacaggtattaggtgtgcaccatcatg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103340569 347 - 106955855 ctgcctcagcctcctgagtagctgggactacaggcacccgctgtcttgcctggctaatttttatattttcagtagagacgggatctcaccatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctgcctcagcctcccaaag---tgggattacaggcatgattcaccatgcctggccCAAATATAt-ttttttaagacagggtcttgctctgttgctcaggctggagtacagtggtacagtggtgcaatcatagctcactgcagcctcaaacttcggggttcaagtgaa-------------gttcctgagtacctgggatgacaggtattaggtgtgaaccatcatg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60636952 331 +  64156825 ctgcctcagcctcctgagtagctggg---------acctgtcaccatgcccggctagtttttgtatttttagtagagacagagtctcaccatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctgcctcagcctcccaaag---tgggaatacaggcatgattcaccgcgcccggccCAAATATCTAttttttaaggcagggtcttgctctgttgctcaggctgga--------gtacaatggtgcaatcatagctgactgcagcttcaaacttctgggctcaagtgaa-------------gctcctgggtacctaggatgacaagtattaggtgtgcaccatcgtg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55777984 331 +  59248254 ctgcctcagcctcctgagtagctggg---------acctgtcaccatgcccggctagtttttgtatttttagtagagacagagtctcaccatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctgcctcagcctcccaaag---tgggaatacaggcatgattcaccgtgcccggccCAAATATCTAttttttaaggcagggtcttgctctcttgctcaggctgga--------gtacaatggtgcaatcatagctgactgcagcttcaaacttctgggctcaagtgaa-------------gctcctgagtgcctaggatgacaagtattaggtgtgcaccatcgtg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882377 340 +  51301725 ctgcctcagcctcctgagtagctgggactacaggtacctgtcaccatgcccggctagattttgtatttttagtagagacagagtctcgccatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctacctcagcctcccaaag---tgggaatacaggcatgattcaccgtgcccagcccaaatatctattttttaaggcagggtcttgctctgttgctcaggctgga--------gtacaatggtgcaatcatagctgactgcagcttcaaacttctgggctcaagtgat-------------gctcctgagtacctgggatgacaggtattAGGTGTGCACCATCGTG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47590933 340 +  50890351 ctgcctcagcctcctgagtcactgggactataggtacctgtcaccatgcccggctagtttttgtatttttggtagagacagagtctcgccatgttggccagtctggtcttgaactcctcctgacctcaggtgatccacctgcctcagcctcccagag---tgggaatacaggcatgattcaccgtgcccggccCAAATATCTAttttttaaggcagggtcttgctctgttgctcaggctgga--------gtacaatggtgcaatcatagctgactgcagcttcaaacttctgggctcaagtgat-------------gctcctgagtacctgggatgacaggtattaggtgtgcaccatcgtg
i chlSab2.chr6              I 1410 C 0
s calJac3.chr22              45944246 299 +  49145316 ctacctcagcctcctgagtagctagaattgcaggcatgcaccaccatgcctggctaatttttgtatttctagaagagatggggtctcaccatgttgcccaagcccctctcgaactctg---gacctcaaataatccacctgctttggcctctcaaagtgctgtgactatagatccaagccatcactcccggcc----TTTTT-TTTTTT---------TTTTTTTAAGTTG--AAGGCTGGA---------------------------------------cttaaactcttgggctcaagcaatccttctgccttaggctccaaagtagctgggacta-------gaggtgtgcactgccatg
i calJac3.chr22             C 0 I 892
e canFam3.chr1               20046977 1762 - 122678785 I

a score=122096.000000
s hg38.chr19_GL949751v2_alt    902661 91 +   1002683 tccagctaacttaagtgggggtttttttttgtgtttttttttttttttttttttttggaaagacaaaatctcactatgttgtccaggctgg
s panTro4.chr19              59898163 74 +  63644993 cccagctaacttaagtggggg-----------------ttttttttgcttttttttggaaagacaaaatctcactatgttgtccaggctgg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56827326 82 +  60714840 cccag------taagtggg---ttttttgtttttttgtgtttttttttttttttttggaaagacagaatctcactatgttgcccaggctgg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103340916 78 - 106955855 cccagctaacttacgtggg---tttttt----------ttttttttttttttttccggaaagacagaatctcactatgttgcccaggctgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60637283 61 +  64156825 ctcagctaacttaagtga--------------------ctttttttttt--------gaaag--agaatctcactatgttgcccaggctgg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55778315 67 +  59248254 ctcagctaacttaagtga--------------------ctttttttttt--tttttggaaag--agaatctcactatgttgcccaggctgg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882717 69 +  51301725 CTCAGCTAActtaagtga--------------------ctttttttttttttttttttaaag--agaatctcactatgttgcccaggctgg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47591273 63 +  50890351 ctcagctaacttaagtga--------------------ctttttttttt------tttaaag--agaatctcaccatgttgcccaggctgg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45945437 63 +  49145316 cccagcctttttt-------------------------tttttttttttttttttttgagac--agagtcttgctctgttg-ccaggctgg
i calJac3.chr22             I 892 I 80
e canFam3.chr1               20046977 1762 - 122678785 I

a score=23278.000000
s hg38.chr19_GL949751v2_alt    902752 18 +   1002683 tcttgaactcccaaagca
s panTro4.chr19              59898237 18 +  63644993 tcttgaactcccaaagca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56827408 18 +  60714840 tcttgaactcccaaagca
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103340994 18 - 106955855 tcttgaaatcccaaagca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60637344  7 +  64156825 tcttga-----------a
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55778382  7 +  59248254 tcttga-----------a
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882786 18 +  51301725 tcttgaactctcaaagca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47591336 18 +  50890351 tcttgaactcTCAAAGCA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20046977 1762 - 122678785 I
e calJac3.chr22              45945500 80 +  49145316 I

a score=985349.000000
s hg38.chr19_GL949751v2_alt    902770 409 +   1002683 ctgagattacaggcatgagttaccacacgccctgcctgaatatttcttattgatatgtatagatatgtatatTCCCAATC-------------tttttttttttttttgagacggagtttcactctttttcccaggtcggagtgaagtggctcgatctcggctcactgcaacctccgccccaccaggttcaatgattctcctgcctcagcctcatgagtagctgggattacagccacccacgaccatgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccaggcaggtctcgaactcccgacctcaggtgatccacccgcctcagcctcacaaagtgctaggattataggcgtgagtcaccgtgcccggtcTATATTCTCTATCTTTTATCAATGATGTGCTT
s panTro4.chr19              59898255 422 +  63644993 ctgagattacaggcatgagttaccacacgccctgccTGAATATTTCTTATTGATATGTATAGATATGTATATTCCCAATCttttttttttttttttttttttttttttgagacggagtttcactctttttcccaggttggagtgaagtggcttgatctcggctcactgcaacctctgccccaccaggttcaatgattctcctgcctcagcctcatgagtagctgggattacagccacccacgaccatgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccaggcaggtctcgaactcccgacctcaggtgatccacctgcctcagcctctcaaagtgctaggattataggcgtgagtcaccgtgcccagtcTATATTCTCTATCTTTTATCAATGATGTGCTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56827426 399 +  60714840 ctgggattacaggcatgagctaccacacgccctgccTGAATATTTCTTACTGGTATGTATAGATATGTATATTCCCAA---------------tttttttttttttttgagacggagtttcactctttttctcaggttggagtgaagtggctcgatctcagctcactgcaacctccgccccaccaggttccatgattctcctgcctcagcctcatgagtagctgggattacagccacccacgaccatgcccagctaatttttgtacttttagtagagatggggtttcaccatgttggccaggcagatctcaaactcctgacctgaggtgatccacctgcctcagcctcacaaagtgctaggattataggcgtgagccaccgtgcccagtcT--------TCTCTTTTATCAATGATGTGCTT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341012 422 - 106955855 ctgggattacaggcatgagctaccacacACCCTGCCTGAATATTTCTTATTGATATGTATAGATATGTATATTCCCAATCttttttttttttttttttttttttttttgagacagcgtttcactctttttcccaggttggagtgaagtggctcgatctcggctcactgcaacctccgccccaccaggttcaatgattctcctgtctcagcctcataagtagctgggattacagccacccatgaccatgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccaggcaggtctcgaactcctgacctcaggtgatccacccgcctcagcctcacaaagtgctaggattacaggtgtgagccaccgtgcccggtcTGTATTCTCTATCTTTTATCAATGATGTGCTT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60637351 389 +  64156825 ctGGGATCACAGACATGAGGTACCATACACCCTGCCTAAATATTTTTTATTGACATGTATA---------------------------tttttttttttttttttttggtgacagcgtttcactcttttgcccaggttggagtgaagtggcccaatctcagctcactgcaacctccaccccaccaggttcattgattctcctgcctcagcctcacgagtagctgggattacctccacccacaaccacgcccggctaatttttgtacttttagtagagacaaggtttcaccatgttggccaggctggtttcgaactcctgacctcaggtgatcccaccgcctcagccttacaaagcagtaggattagaggcatgagccaccgtacccggccTGTAT------TCTTTTATCAGTGATGTGCTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55778389 404 +  59248254 ctGGGATCACAGACATGAGGTACCATACACCCTGCCTAAATATTTTTTATTGACATGTATA----------TTCACGAtt--tttttttttttttttttttttttttGGTgacagcgtttcactcttttgcccaggttggagtgaagtggcccaatctcagctcactgcaacctccaccccaccaggttcactgattctcctgcctcagcctcacgagtagctgggattacctccacccacaaccacgcccggctaatttttgtacttttagtagagacaaggtttcaccatgttggccaggctggtttcgaactcctgacctcaggtgatcccaccgcctcagccttacaaagcactaggattacaggcatgagccaccgtgcccggccTGTAT------TCTTTTATCAATGATGTGCTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47882804 397 +  51301725 ctgggatcacagacatgaggtACCATACACCCtgcctaaatattttttattgacatGTATA----------TTCacgat---------tttttgttgttgttgttgttgagacaacgtttcactcttttgcccaggttggagtgaagtggctcgatctcagctcactgcaacctccaccccaccaggttcaatgattctcctgcctcagcctcacgagtagctgggattacctccacccacaaccacgcccagctaatttttgtacttttagcagagacaaggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatcccaccacctcagcctcacaaagcactaggattacaggcatgagccaccgtgcccggcctgtat------tcTTTTATCAATGTTGTGCTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47591354 391 +  50890351 CTGGGATCACAGACATGAGGTACCATACACCCTGCCTAAATATTTCTTATTGACATGTATA----------GTCACAGT---------Ctttttcttttttttt----gagacagcgtttcactc--ttgcccaggttggagtgaagtggctcgatctcagctcactacaacctccaccccaccaggttcaatgattctcctgcctcagcctcacaagtagctgggattacctccacccacaaccacgcccagctaatttttgtacttttagtagagacaaggtttcaccgtgctggccaggctggtctcgaactcctgacctcaggcgatcccgccgcctcagcctcacaaagcactaggattacaggcgtgagccaccgtgcctggccTGTGT------TCTTTTATCAATGATGTGCGT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45945580 315 +  49145316 ctgggactacaggcgcacgccaccaa-------gcccagcTAAT--------------------------------------------ttttttttctttttctttttgagacagagtttcacttttttgcctaggttggagtgaaatggcacaatctcagctcactgca--------------------------------------------------------attgcaggcacccgccaccatgcccagctaattttcatatttttagtagagactgggttttgccatgttggtcaggctggtctccaactcttgacctcaggtgatttacctgcctcagcctcccaaagcgctaggattacaggtgtgagccaccatgcccACACTGTATTCCCAATCTTTTATCTATGATATGTTT
i calJac3.chr22             I 80 C 0
e canFam3.chr1               20046977 1762 - 122678785 I

a score=156376.000000
s hg38.chr19_GL949751v2_alt    903179 53 +   1002683 AGCATTTTAACTTATTTTTACCCTCTATTGGA-TTTTTGTCTAAGAAGAATAGG
s panTro4.chr19              59898677 53 +  63644993 AGCATTTTAACTTATTTTTACCCTCTATTGGA-TTTTTGTCTAAGAAGAATAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56827825 53 +  60714840 AGCATTTTAACTTATTTTTACCCTCTATTGGA-TTTTTGTCTAAGAAGAACAGG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341434 53 - 106955855 AGCATTTTAACTTATTTTTACCCTCTACTGGA-TTTTTGTGTAAGAAGAATAGG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60637740 50 +  64156825 AGCATTTTAACTTATTTTTACCCTCTGTTGGA-TTTTTGTGT---AAGAGTAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55778793 50 +  59248254 AGCATTTTAACTTATTTTTACCCTCTGTTGGA-TTTTTGTGT---AAGAGTAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47883201 51 +  51301725 agcattttaacttatttttaccCTCTGTTGGATTTTTTGTGT---AAGAGTAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47591745 50 +  50890351 AGCATTTTAACTCATTTTTAGACTCTGTGGGA-TTTTTTTGT---AAGAATAGG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45945895 53 +  49145316 AGCATTTTAACTTATTTTTACCCTCTATTGGA-TTTTTGTGTAAGAAGTATAAG
i calJac3.chr22             C 0 I 481
s canFam3.chr1               20048739 53 - 122678785 agaaTTTTGGCTTATTCTGACCCTCTGTAAGA-TTCTTGTGCAAGAAATTTGAG
i canFam3.chr1              I 1762 C 0

a score=1268441.000000
s hg38.chr19_GL949751v2_alt    903232 397 +   1002683 TTCTTTCTCCTGTGATGCTTCTTGGGTGTTGAGTTGTCTGATGGTGGTGCTAATAAGTGATTACATGGTCCAGCTTTCAATTG----------TACTCATTTGTCAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCCGTGATGGACACACA----------------------TTTGGTGTAA-CCC--TTTCTTCTCTTCCCTATAGATCCCAGGATGATCAGCACATGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGATCAAATAAGGATCTGATGGGTCTAGCAATCAATGATAGCTTTCTCAGTGCCTCCCTAGTAAGGATCCTGTGTGAACAAATAGCCTCTGACACCTGTCATCTCCAGAGAGTGGTGTAAGTAGAAACTAATTCATGAACTCAAATCCTTAGGGTATGAAAAT
s panTro4.chr19              59898730 398 +  63644993 TTCTTTCTCCTGTGATGCTTCTTGGGTGTTGAGTTGTCTGATGGTGGTGCTAATAAGTGATTACATGGTCCAGCTTTCAATTA----------TACTCATTTGTCAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCCGTGATGGACACACA----------------------TTTGGTGTAACCCC--CTTCTTCTCTTCCCTATAGATCCCAGGATGATCAGCACATGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGATCAAATAAAGATCTGATGGGTTTAGCAATCAACGATAGCTTTCTCAGTGCCTCCCTAGTAAGGATCCTGTGTGAACAAATAGCCTCTGACACCTGTCATCTCCAGAGAGTGGTGTAAGTAGAAACTAATTCGTGAACTAAAATCCTTAGGGTGTGAAAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56827878 395 +  60714840 TTCTTTGTCCTGTGATGCTTTTTGGGTGTTGAGTTGTCTGATGGTGGTGC---TAAATGATTAAATGGTCCAGTTTTCAATTA----------TACTTATTTGTTAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCCGTGATGGACATACA----------------------TTTGGTGTAACCCG--CTTCTTCTCTTCCCTGTAGATCCCAGGATGATCAGCACGTGCTTCCTTTCTGGATGGACCTTTGTTCCATATTTGGCTCAAATAAGGATCTGATGGGTCTAGCAATCAATAATAGCTTTCTCAGTGCCTCCCTAGTAAGGATCCTGTGTGAAGGAATAGCCTCTGACACCTGTCATCTCCAGAGAGTGGTGTAAGTAGAAACTAATTCGTGAACTGAAATCCTTAGGGTGTGAAAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341487 392 - 106955855 TTCTTTCTCCTGTGATGCTTCTTGGGTGTTGAGTTGTCTGATGGTGGTGC---TAAATGATTAAATGGTCCAGCTTTCAGTTA----------TACTTATTTGTTAGGGGTATATGCACAGAGAAACCCTAAATACTTCAGCCGTGATGGACACACA----------------------TTTGATGTAACCCC-----CTTCTCTTCCCTGTAGATCCCAGGATGATGAGCACGTGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGCTCAAATAAGGATCTTATGGGTCTAACAATCAATAATAGCTTTCTCAGTGCCTCCCTAGTAAGGATCCTGTGTGAACAAATAGCTTCTGACACCTGTCATCTCCAGAGAGTGGTGTAAGTAGAAACTAATTCATGAATTAAAATCCTTAGGGTGTGAAAAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60637790 401 +  64156825 TTCTTTCTTCTGTGATGCTTCTTGGCTGTTGAGTTGTCTGATGGTGGTGC---CAAAAGATTAAATGGTCCAGCTTTCAGTTATACTTATTTCTACTTATTTGTTAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCCATGATGAACCTACA-----------------------TTGATGTAACCCC-----TTTCTCTTCCCTATAGATCCCAGGATGATCAGGACATGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGCTCAAATAAGGATCTGATGGGTCTAGAAATCAATAATAGCTTTCTGAGTGCCTCCCTAGTAAAGATCCTGTGTGAACAGATAGCCTCTGACAACTGTCATCTCCAGAGACTGGTGTAAGTAGACACTAATTCATGAACTAAAATCCTAAGGGTGTGAAAAT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55778843 401 +  59248254 TTCTTTCTTCTGTGATGCTTCTTGGCTGTTGAGTTGTCTGATGGTGGTGC---CAAAAGATTAAATGGTCCAGCTTTCAGTTATACTTATTTCTACTTATTTGTTAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCCATGATGAACCTACA-----------------------TTGATGTAACCCC-----TTTCTCTTCCCTGTAGACCCCAGGATGATCAGGACATGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGCTCAAATAAGGATCTGATGGGTCTAGAAATCAATAATAGCTTTCTGAGTGCCTCCCTAGTAAAGATCCTGTGTGAACAGATAGCCTCTGACAACTGTCATCTCCAGAGACTGGTGTAAGTAGACACTAATTCATGAACTAAAATCCTAAGGGTGTGAAAAT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47883252 401 +  51301725 TTCTTTCTTCTGTGATGCTTCTTGGGTGTTGAGTTGTCCGATGGTGGTGC---CAAAAGATTAAATGGTCCAGCTTTCAGTTACACTTATTTCTACTTATTTGTTAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCcatgatgaacctaca-----------------------ttgatgTAACCCC-----TTTCTCTTCCCTGTAGATCCCAGGATGATCAGGACATGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGCTCAAATAAGGATCTGATGAgtctagaaatcaataatagctTTCTGAGTGCCTCCCTAGTAAAGATCCTGTGTGAACAGATAGCCTCTGACAACTGTCATCTCCAGAGAGTGGTGTAAGTAGACACTAATTCATGAACTAAAATCCTAAGGGTGTGAAAAT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47591795 401 +  50890351 TTCGTTCTTCTGTGATGCTGCTTAGGTGTTGAGTTGTGTGATGGTAGTGC---CAAATGATTAAATGGTCCAGCTTTCAGTTATACTTATTTCTACTTATTTGTTAGGGGTATATGCCCAGAGAAACCCTAAATACTTCAGCCATGATGAACCTACA-----------------------TTGATGTAACCCC-----TTTCTCTTCCCTGTAGATCCCAGGATGACCAGGACATGCTTCCTTTCTGGACGGACCTTTGTTCCATATTTGGCTCAAATAAGGATCTGATGGGTCTAGAAATCAATAACAGCTTTCTGAGTGCCTCCCTAGTGAGGATCCTGTGTGAACAGATAGCCTCTGACAGTTGTCATCTCCAGAGAGTGGTGTAAGCAGACACTAATTCATGAACTAAAATCCTAAGGCTGTGAAAAT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45946429 395 +  49145316 TTCTTTCTCCTGTGATGTGTCTTGGGCATTGAGTTGTCTGACAGTGGTGA---TAAATGATTAAATGGTCCAGCTTTCAATTC----------TACTTGTGTATTAGGGGTGTGTGCCCAGAGAAGCCCTAAACACTTTGGCCATGACGGATGCACG----------------------TTTGATGTGACCCC--CTTCTTCCTTTCCCTGCAGATCCCAGGATGATCAACACCTGCTTCCTTTCTGGACGGATCTTTGTTCCGTATTTGGCTCAAACAAGGATCTAATCACTCTAGAAATCAATAATAGCTTTCTTAGTGCCTCACTGTTACGGATCCTGTGTGAACAAATAGCTTCTGACACCTGTCATCTCCAGAGAGTGGTGTAAGTAGAAACTAATTCATGAACTAAAATCCTTAGGATGTGAAAGt
i calJac3.chr22             I 481 I 305
s canFam3.chr1               20048792 415 - 122678785 --TTTTTTCCAGTGACATGTCTTAGGTGATGAATTGTCTGATAGTGACAC---TAAGTCATTAAATCATCTGACTTTTAGAGT------------TCTATTTACTAGGAGTGTGTGCCCAGAGCAACCCTAAATATCTTCATGATGTTGGACAAATGTTATATTTTCTCTCCAGCAATCTTTGGTAAATTCCTTCCTTTGCCTTTTCCCAACAGGTCCCAGAATGATCAACACGTGCTTCCTTTCTGGATAGACTTCTGTTCCATGTTTGACTCAAATAAAAACCTGATATTTCTAGACATCAGTCAGAGCTTCCTTAGTGCCTCATCTGTGAGAATTCTCTGTGAAAAAATAACCTCTGCTACCCATAATCTTCAGAAAGTGGTGTAAGTAGAAGCTAACCCCTGGATGAAAACCCCTAGGGCATAACCAA
i canFam3.chr1              C 0 C 0

a score=-899.000000
s hg38.chr19_GL949751v2_alt    903629 2 +   1002683 GG----
s panTro4.chr19              59899128 2 +  63644993 GG----
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828273 2 +  60714840 GT----
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341879 2 - 106955855 GT----
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638191 2 +  64156825 GT----
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55779244 2 +  59248254 GT----
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47883653 2 +  51301725 GT----
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47592196 2 +  50890351 GT----
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20049207 6 - 122678785 GCTCCT
i canFam3.chr1              C 0 C 0
e calJac3.chr22              45946824 305 +  49145316 I

a score=121335.000000
s hg38.chr19_GL949751v2_alt    903631 37 +   1002683 TACAATGTTAA-----------CATCGGAGCAATATTCAGATTCCTGT
s panTro4.chr19              59899130 37 +  63644993 TACAATGTTAA-----------CATTGGAGCAATATTCAGATTCCTGT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828275 37 +  60714840 TACAATTTTAA-----------CGCTGTAACAATATTCAGATTCCTGT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341881 37 - 106955855 TACAATTTTAA-----------CATTGGAGCAATATTCAGATTCCTGT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638193 37 +  64156825 TACAATTTTAA-----------TATTGGAACAATATTCAAATTCCTGT
i rheMac3.chr19             C 0 I 304
s macFas5.chr19              55779246 37 +  59248254 TACAATTTTAA-----------TATTGGAACAATATTTAAATTCCTGT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47883655 37 +  51301725 TACAATTTTAA-----------TATTGGAACAATATTCAAATTCCTGT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47592198 37 +  50890351 TACAATTTTAA-----------TATTGGAACAGTATTCAAATTCCTGT
i chlSab2.chr6              C 0 I 314
s calJac3.chr22              45947129 37 +  49145316 TACATTTTTAA-----------TATTGGAGCAATATTCAAATTCCTGT
i calJac3.chr22             I 305 C 0
s canFam3.chr1               20049213 48 - 122678785 TACATTTTTAAGGCTCCATTTTTATTGGAGCAATATTTGAATTCCTTT
i canFam3.chr1              C 0 C 0

a score=1808.000000
s hg38.chr19_GL949751v2_alt    903668 2 +   1002683 AC
s panTro4.chr19              59899167 2 +  63644993 AC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828312 2 +  60714840 CC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341918 2 - 106955855 CC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55779283 1 +  59248254 -C
i macFas5.chr19             C 0 I 303
s papAnu2.chr19              47883692 1 +  51301725 -C
i papAnu2.chr19             C 0 I 352
s calJac3.chr22              45947166 2 +  49145316 CC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20049261 2 - 122678785 TC
i canFam3.chr1              C 0 C 0
e chlSab2.chr6               47592235 314 +  50890351 I
e rheMac3.chr19              60638230 304 +  64156825 I

a score=247639.000000
s hg38.chr19_GL949751v2_alt    903670  87 +   1002683 TAGACTC---TTAAGTGCTCGAGACACAGGGAATTGAGAGAGTCCTGT---CCTTAAATTTATTTTGTGGGATAATCGTATAAAGTAATTT----------------CT
s panTro4.chr19              59899169  87 +  63644993 TAGACTC---TTAAGTGCTCAAGACACAGGGAATTGAGAGAGTCCTGT---CCTTAAATTTATTTTGTGGGGTAATCGTATAAAGTAATTT----------------CT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828314 103 +  60714840 TAGACTC---TTAGGTGCTCAAGACACAGGGAATTGAGAGAGTCTTGT---CCTTAAATTTGTCTTGTGGGATAATCGTATAAAGTAATTTAGTAATTTAGAAATTACT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103341920  87 - 106955855 TAGACTT---TTAAGTGCTCAAGACACAGGGAATTGAGGGAGTCCTGT---CCTTAAATGTGTCTTGTGGGATAATCATATAAAGTAATTT----------------CT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638534  85 +  64156825 TAGACTC---TTAAGTGCTGAAGACACAGAGAATTGA--GAGTCCTGT---CCTTAAATTTGTCTCGTGGGATAATCGTAGAAAGTAATTT----------------TT
i rheMac3.chr19             I 304 C 0
s macFas5.chr19              55779587  85 +  59248254 TAGACTC---TTAAGTGCTGAAGACACAGAGAATTGA--GAGTCCTGT---CCTTAAATTTGTCTCGTGGGATAATCGTAGAAAGTAATTT----------------TT
i macFas5.chr19             I 303 C 0
s papAnu2.chr19              47884045  85 +  51301725 taGACTC---TTAAGTGCTCAAGACACAGAGAATTGA--GAGTCCTGT---CCTTAAATTTGTCTCGTGGGATAATCGTAGAAAGTAATTT----------------tt
i papAnu2.chr19             I 352 C 0
s chlSab2.chr6               47592549  85 +  50890351 TAGACTC---TTAAGTACTCAAGACACAGGGAATTGA--GAGTCCTGT---CCTTAAATTTGTCTCATGGGATAATCGTATAAAGTAATTT----------------TT
i chlSab2.chr6              I 314 C 0
s calJac3.chr22              45947168  88 +  49145316 TAGACTC----TAAGTGCTCAAGACACGAGGAATTGAGAGAGTCCTACCAGCCTTAAATTTGTCTTGTGGGATAATCATATAAAGTAACTT-----------------T
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20049263  86 - 122678785 CAGAATCCAACTGGGCATTCAAGACATAAGAAGTTGAGATGGTCCATA---CCATACATTTGTCTACTG----AAGCATATGAAGTAATTT----------------TT
i canFam3.chr1              C 0 I 1652

a score=556.000000
s hg38.chr19_GL949751v2_alt    903757  2 +   1002683 A-------------G
s panTro4.chr19              59899256  2 +  63644993 A-------------G
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828417 15 +  60714840 AAATTACTTTATACG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342007  2 - 106955855 A-------------G
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638619  2 +  64156825 A-------------G
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55779672  2 +  59248254 A-------------G
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47884130  2 +  51301725 a-------------g
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47592634  2 +  50890351 A-------------G
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947256  2 +  49145316 A-------------G
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I

a score=230973.000000
s hg38.chr19_GL949751v2_alt    903759 106 +   1002683 Gggctgggcatggtggttcacacttgtaattccaacacttcgggaggccgaggcagacagatcacttgaggtcaggagttcgagaccagcctggccaacgtgacaa
s panTro4.chr19              59899258 106 +  63644993 Gggctgggcatggtggttcacacttgtaattccaacacttcgggaggccgaggcagacagatctcttgaggtcaggagttcgagaccagcctggccaacatgacaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828432 106 +  60714840 Aggcagggcatggtggttcacacctgtaattccaacacttcgggaggccgaggcagacagatcacttgaggtcaggagttcgagaccagcctggccaacattacaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342009 106 - 106955855 Gggctgggcatagtggttcacacctgtaattccaacacttcgggaggctgaggcagacagatcacttgaggtcaggagttcgagaccagcctggccaacatgacaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638621 106 +  64156825 Gggtcgggcacagtggctcacacctgtaattccaacacttcgggaggccgaggcagatagatcacttgaggtcaggagtttgagaccagcctggccaacatgacaa
i rheMac3.chr19             C 0 I 46
s macFas5.chr19              55779674 106 +  59248254 Gggtcgggcacagtggctcacacctgtaattccaacattttgggaggccgaggcagacagatcacttgaggtcaggagttccagaccagcctagccaagatggcaa
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47884132 105 +  51301725 gggccgggcatggtggctcacacctgtaattccaacactttgggaggccgaggcagacagatcacttg-ggtcaggagttccagaccagcctagccaagatggcaa
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45947258 106 +  49145316 Tggcagggcacagtggctcacaccagtaatctcagcactttgggaggctgaggcgtatggataacttgacataaggggttcaagaccagcctggccaacatggtga
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e chlSab2.chr6               47592636   0 +  50890351 C

a score=130769.000000
s hg38.chr19_GL949751v2_alt    903865 82 +   1002683 aaccctgcctctactaaaaata----caaaaattatccaggcgtggtggcaggcacctgtaatatcagctacttgggaggctgagg-------
s panTro4.chr19              59899364 82 +  63644993 aaccctgcctctactaaaaata----caaaaattatccaggcgtggtggcaggcacctgtaatatcagctacttgggaggctgagg-------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828538 82 +  60714840 aaccctgcctctactaaaaata----caaaaattatccaggcgtggtggcaggcacctgtaatatcagctacttgagaggctgagg-------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342115 82 - 106955855 aactctgcctctactaaaaata----caaaaattatccaggcatggtgacaggcacctgtaatctcagctacttaggaggctgagg-------
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55779780 82 +  59248254 aaccccgcctctactaaaaata----caaaaattatccgggcgtggtggcgggcgcctgtaataccagctacttcggaggctgagg-------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47884237 82 +  51301725 aaccccgcctctactaaaaata----caaatattatccgggcgtggtggcgggcgcctgtaatagcagctacttcggaggctgagg-------
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45947364 93 +  49145316 aaccccatctctactaaaaatatttttaaaaattagccagctctggtggcaggtgcctgtaatcccagctacttgggatgttgagggttgagg
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e chlSab2.chr6               47592636  0 +  50890351 C
e rheMac3.chr19              60638727 46 +  64156825 I

a score=105742.000000
s hg38.chr19_GL949751v2_alt    903947 130 +   1002683 caggagaattacttgaacccaggaggcggaggt----tgcagtgaaccaagatcctgccactggactccagtctgagtgacagagcgagactgcgtctcaaaaaaaaaaaaaaa----aaaaaagaaaaagaaaaaaa
s panTro4.chr19              59899446 123 +  63644993 caggagaattacttgaacccaggaggcggaggt----tgcagtgaaccgagatcctgccactggactccagtctgagtgacagagcgagactcggtctcaaaaaaaaaaaaaaa-----------aaagagaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828620 117 +  60714840 caggagaattgcttgaacccaggaggcggaggt----tgcagtgaaccaagatcttgccactagactccagtctgagtgacagagcgagactctgtctcaaaaaaaaaaaaaaa-----------------gaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342197 112 - 106955855 cgggagaattccttgaacccaggaggcggaggt----tgcagtgaaccgagatcctgccactggactccagcctgagtgacagagcgagactctgtctccaaaaaaaaaaGGCG----------------------GG
i nomLeu3.chr10             C 0 C 0
s papAnu2.chr19              47884319 136 +  51301725 --taagagtcgcttgagtccgggaggtggagtttgcatgcagtgagctgagatcgcgccgctgtgctccagcctgcgcgacagagtgagactccatctcaaaaaaaaaaacaatctataaagatttaaaataaaaaaa
i papAnu2.chr19             C 0 C 0
s calJac3.chr22              45947457 112 +  49145316 caggagaattgcttgaacccaggaggcagaggt----tgcagtgagctgagatcatgccactgcactgcagcctgagcaaac-----agactccatctcaaaaaaaaaaaaaaG-----------------TTAAAAG
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e chlSab2.chr6               47592636   0 +  50890351 C
e macFas5.chr19              55779862   0 +  59248254 C
e rheMac3.chr19              60638727  46 +  64156825 I

a score=166047.000000
s hg38.chr19_GL949751v2_alt    904077 149 +   1002683 Gggccgggcacaatggctcacgcctgtagtcccagcactttgggggcccaagg-tggggggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgcaagaccctgtctctacgaaaaatacaaaaatttgccaggtgtc
s panTro4.chr19              59899569 149 +  63644993 Gggccgggcacaatggctcacgcctgtagtcccagcactttgggggcccaagg-cggggggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgcaagaccctgtctctacaaaaaatacaaaaatttgccaggtgtc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828737 149 +  60714840 Gggccgggcacaatggctcacgcctgtagtcccagcacttcgggggcccaagg-cggagggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgcaaaaccctgtctctactaaaaatacaaaaatttgctaggtgtg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342309 147 - 106955855 Gggccgggcacagtggctcacgcctgtaatcccagcactttgggggcccgagg-cggggggatcacctgaggtcaggagttcgagaccagcctggccaagatg--gcaaaaccctgtctctactaaaaatacaaaaatttgccaggcgtg
i nomLeu3.chr10             C 0 C 0
s chlSab2.chr6               47592636 146 +  50890351 Gggccgggcacggtggctcacacctgtaattccagcactttgggaggccaagg-cagacagatcacttgaagtcaggagttccagaccagcctagccaagatg--gcaaaaccccgcctctactaaaaatac-aaaattatccgggcgtg
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947569 148 +  49145316 Gggctgggggcggtggctcacgcctggaatcccagcactttgggaagtcaaggccaggggaatcacttgaggtcaggagttcaagactaacctggccaagatg--gcaaaaccctatctctactaaaaatataaaaattagctgggcgag
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e papAnu2.chr19              47884455   0 +  51301725 C
e macFas5.chr19              55779862   0 +  59248254 C
e rheMac3.chr19              60638727  46 +  64156825 I

a score=57877.000000
s hg38.chr19_GL949751v2_alt    904226 42 +   1002683 gtggcaggtgcctataatcccagctactccggatgctgaggg
s panTro4.chr19              59899718 42 +  63644993 gtggcaggtgcctataatcccagctactccggatgctgaggg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828886 42 +  60714840 gtggcaggtgcctataatcccagctattccagatgctgaagg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342456 42 - 106955855 gtggcaggtgcctataatcccagctactccggatgctgaggg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638773 41 +  64156825 gtggcgggcgcctgtaataccagctacttcggaggccgagg-
i rheMac3.chr19             I 46 C 0
s chlSab2.chr6               47592782 41 +  50890351 gtggcgggcgcctgtaataccagctactctggaggctgagg-
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947717 41 +  49145316 gtggcaggcacctgtaactccaggaactcttgaggctgggg-
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e papAnu2.chr19              47884455  0 +  51301725 C
e macFas5.chr19              55779862  0 +  59248254 C

a score=207987.000000
s hg38.chr19_GL949751v2_alt    904268 101 +   1002683 --taggagtcgcttgaatccgggaggcagagtttgctttgcagtgagccgagatcgcgccactgcactc---cagcctgggcaacagagtgagactccatctcaaa
s panTro4.chr19              59899760 104 +  63644993 --taggagtcgcttgaatccgggaggcagagtttgctttgcagtgagccgagatcgcgccactgcactccagcagcctgggcaacagagtgagactccatctcaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56828928 101 +  60714840 --taggagtcacttgagtccgggaggcagagtttgctttgcagtgagccgagatcacgccactgcactc---cagcctgggcgacagagtgagactccatctcaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342498 101 - 106955855 --taggagttgcttgaatccaggaggcagagtttgctttgcagtgagcgaagatcgtgccactgcattc---cagcctgggcgacagagtgagactccatctcaaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638814 100 +  64156825 --taagagtcacttgagtccgggaggtggagttcgc-atgcagtgagccgagatcgtgccactgcgctc---cagcctgtgcaacagagtgagactccatctcaaa
i rheMac3.chr19             C 0 I 31
s macFas5.chr19              55779862 100 +  59248254 --taagagtcacttgagtccgggaggtggagtttgc-atgcagtgagctgagatcgtgccactgcgctc---cagcctgtgcgacagagtgagactccatctcaaa
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47592823 100 +  50890351 --taagagtcgcttgagtccgggaggtggagtttgc-atgcagtgagctgagatcgcgccactgcactc---cagcctgggcgacacagtgagactccatctcaaa
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947758  96 +  49145316 caggagaatcacttgaatcagggagatgaaggttgc-----agtgagccgagatcatgccactgcactc---cagcctgggtgac--ggtgagactctatctcaaa
i calJac3.chr22             C 0 I 3
e canFam3.chr1               20049349 1652 - 122678785 I
e papAnu2.chr19              47884455   0 +  51301725 C

a score=8350.000000
s hg38.chr19_GL949751v2_alt    904369 11 +   1002683 ga---aaaaaaaaa
s panTro4.chr19              59899864 11 +  63644993 ga---aaaaaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829029 12 +  60714840 ga--gaaaaaaaaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342599 14 - 106955855 gaaaaaaaaaaaaa
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55779962  7 +  59248254 -------aaaaaaa
i macFas5.chr19             C 0 I 2
s chlSab2.chr6               47592923 11 +  50890351 ---aaaaaaaaaaa
i chlSab2.chr6              C 0 I 25
s calJac3.chr22              45947857 11 +  49145316 ---gaaaaagaaaa
i calJac3.chr22             I 3 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e papAnu2.chr19              47884455  0 +  51301725 C
e rheMac3.chr19              60638914 31 +  64156825 I

a score=17182.000000
s hg38.chr19_GL949751v2_alt    904380 16 +   1002683 TCTGTAAAGATGGACA
s panTro4.chr19              59899875 16 +  63644993 TCTGTAAAGATGGACA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829041 16 +  60714840 TTTGTAAAGATGGACA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342613 16 - 106955855 TCTGTAAAGATGGACA
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55779971 16 +  59248254 tatataaagatttaaa
i macFas5.chr19             I 2 I 4
s calJac3.chr22              45947868 16 +  49145316 TCTGTAAAGATGGACA
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e chlSab2.chr6               47592934 25 +  50890351 I
e papAnu2.chr19              47884455  0 +  51301725 C
e rheMac3.chr19              60638914 31 +  64156825 I

a score=1911.000000
s hg38.chr19_GL949751v2_alt    904396 1 +   1002683 A
s panTro4.chr19              59899891 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829057 1 +  60714840 A
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342629 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55779991 1 +  59248254 a
i macFas5.chr19             I 4 I 1
s chlSab2.chr6               47592959 1 +  50890351 A
i chlSab2.chr6              I 25 I 1
s calJac3.chr22              45947884 1 +  49145316 A
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e papAnu2.chr19              47884455 0 +  51301725 C
e rheMac3.chr19              60638914 31 +  64156825 I

a score=2104.000000
s hg38.chr19_GL949751v2_alt    904397 4 +   1002683 AAAT
s panTro4.chr19              59899892 4 +  63644993 AAAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829058 4 +  60714840 AAAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342630 4 - 106955855 AAAT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638945 3 +  64156825 aaa-
i rheMac3.chr19             I 31 C 0
s macFas5.chr19              55779993 3 +  59248254 aaa-
i macFas5.chr19             I 1 C 0
s chlSab2.chr6               47592961 3 +  50890351 AAA-
i chlSab2.chr6              I 1 C 0
s calJac3.chr22              45947885 4 +  49145316 AAAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I
e papAnu2.chr19              47884455 0 +  51301725 C

a score=5576.000000
s hg38.chr19_GL949751v2_alt    904401 2 +   1002683 TT
s panTro4.chr19              59899896 2 +  63644993 TT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829062 2 +  60714840 TT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342634 2 - 106955855 TT
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638948 2 +  64156825 tt
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55779996 2 +  59248254 TT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47884455 2 +  51301725 tt
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47592964 2 +  50890351 TT
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947889 2 +  49145316 CT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20049349 1652 - 122678785 I

a score=147935.000000
s hg38.chr19_GL949751v2_alt    904403 63 +   1002683 AAACATGGAAAAAATAGTTCCTAAAGTTTAAATATATCG-----AGCCCCTGGTTTCCATTTAAGTAC
s panTro4.chr19              59899898 63 +  63644993 AAACATGGAAAAAATAGTTCCTAAAGTTTAAATATATCG-----AGCCCCTGGTTTCCATTTAAGTAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829064 63 +  60714840 AAACATGGAAAAAATAGTTCCTAAAGTTTAAATATATTG-----AGCCCCTGGTTTCCATTTAAGTAC
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342636 63 - 106955855 AAACATGGAAAAAATAGTTGCTAAAGTTTAAATATATTG-----AGCCCCTGGTTTCTATTGAAGTAC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60638950 54 +  64156825 aaaCATGGAAAAAAT---------AGCCTAAATATATTG-----AGCCCCTAGTTTCTATTTAAGTAC
i rheMac3.chr19             C 0 I 911
s macFas5.chr19              55779998 54 +  59248254 AAACATGGAAAAAAT---------AGCCTAAATATATTG-----AGCCCCTAGTTTCTATTTAAGTAC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47884457 54 +  51301725 aaacatggaaaaaat---------agtctaaataTATTG-----AGCCCCTAGTTTCTATTTAAGTAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47592966 54 +  50890351 AAGCATGGAAAAAAT---------AGTCTAAATATATTG-----AGCCCCTAGTTTCTATTTAAGTAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947891 67 +  49145316 AAACATGGAGAAAAA-GTTTCTGAAGTTTAAATACATTGTTTTTAAACTTGTATTTCTGTTTAAGTGC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20051001 56 - 122678785 aaaTATGAACAAAGT---TTCCAGTGTTTAAACCTGTTG----CAGCCCTTTGTTCTCATGTA-----
i canFam3.chr1              I 1652 C 0

a score=3848.000000
s hg38.chr19_GL949751v2_alt    904466 3 +   1002683 GAT
s panTro4.chr19              59899961 3 +  63644993 GAT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829127 3 +  60714840 GAT
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342699 3 - 106955855 GAC
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55780052 3 +  59248254 AAC
i macFas5.chr19             C 0 I 1009
s papAnu2.chr19              47884511 3 +  51301725 AAC
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47593020 3 +  50890351 AAC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947958 3 +  49145316 AAT
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20051057 0 - 122678785 C
e rheMac3.chr19              60639004 911 +  64156825 I

a score=3276.000000
s hg38.chr19_GL949751v2_alt    904469 1 +   1002683 A
s panTro4.chr19              59899964 1 +  63644993 A
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829130 1 +  60714840 A
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342702 1 - 106955855 A
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60639915 1 +  64156825 a
i rheMac3.chr19             I 911 C 0
s macFas5.chr19              55781064 1 +  59248254 a
i macFas5.chr19             I 1009 C 0
s papAnu2.chr19              47884514 1 +  51301725 A
i papAnu2.chr19             C 0 I 707
s chlSab2.chr6               47593023 1 +  50890351 A
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947961 1 +  49145316 A
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20051057 0 - 122678785 C

a score=263710.000000
s hg38.chr19_GL949751v2_alt    904470  95 +   1002683 CAGGTGTACACACTAAAGATTTCAC-TTTCGTTC--------TCTTTTCCCTAGGTTCAAAAACA-TTTCCCCAGCTGATGCTCATCG--GAACCTCTGCCTAGCTC
s panTro4.chr19              59899965  95 +  63644993 CAGGTGTACACACTAAAGATTTCAC-TTTCGTTC--------TCTTTTCCCTAGGTTCAAAAACA-TTTCCCCAGCTGATGCTCATCG--GAACCTCTGCCTAGCTC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829131 107 +  60714840 CAGGTGTACACACTAAAGATTTAACTTTTCGTTCTCTATGCGTCTTTTCCCTAGGTTCAAAAACATTTTCCCCAGCTGTATTTAATCGTCTAACCTCTGCCTAGCTC
i ponAbe2.chr19             C 0 I 457
s nomLeu3.chr10             103342703  95 - 106955855 CAGATGTGTACACTCAAGATTTCAC-TTTCATTC--------TCTTTTCCCTAGGTTCAAAAACA-TTTCCCCAGCTGATGCTCTTCG--GAACCTCTGCCTAGCTC
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60639916  90 +  64156825 caGGTATAGACACTCAAGATTTCAC-TTT-------------TGTTTTCCCTAGGTTCAAAAACA-TTTTCCCAGCTGATGCTTATCG--GAACCTCTGCCTAGCTC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55781065  90 +  59248254 caGGTATAGACAGTCAAGATTTCAC-TTT-------------TGTTTTCCCTAGGTTCAAAAACA-TTTTCCCAGCTGATGCTTATTG--GAACCTCTGCCTAGCTC
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47885222  90 +  51301725 cAGGTATAGACACTCAagatttcac-ttt-------------tgttttcccTAGGTTCAAAAACG-TTTTCCCAGCTGATGCTCATCG--GAACCTCTGCCTAGCTC
i papAnu2.chr19             I 707 C 0
s chlSab2.chr6               47593024  90 +  50890351 TAGGTATAGACACTCAAGATTTCAC-TTT-------------TGTTTTCCCTAGGTTCAAAAACA-TTTCCCCAGCTGATGCTCCTCG--GAACCTCTGCCTAGCTC
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45947962  93 +  49145316 GAGATACAGACACTCAACATTTCAC-TTTGGT----------GCTTTTTTCTAGGATCAAAAACA-TCTCCCCAGCTGATGCGTATCG--GAATCTCTGCCTAGCTC
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20051057  91 - 122678785 ----TATATAAATGCAAGATTTCAC-CTTTCTTA--------TCCTTTCCCTAGCCTCAAAAATA-TTTTCCCAGCAGACGCTTATAG--AAACTTCTGCATTGCTT
i canFam3.chr1              C 0 C 0

a score=143331.000000
s hg38.chr19_GL949751v2_alt    904565 42 +   1002683 TTCGAGGTCACAAGACTGTAACGTATCTGACCCTTCAAGGCA
s panTro4.chr19              59900060 42 +  63644993 TTCGAGGTCACAAGACTGTAACGTATCTGACCCTTCAAGGCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829695 41 +  60714840 TTCGAGGTCACAAGACTGTAACGTATCTGA-CCTTCAAGGCA
i ponAbe2.chr19             I 457 C 0
s nomLeu3.chr10             103342798 42 - 106955855 TTCGAGCTCACAAGACTGTAACGTATCTGACCCTTCAAGGCA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60640006 42 +  64156825 TTCGAGGTCACAAGACTGTAACGCATCTGACCCTTCAAGGCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55781155 42 +  59248254 TTCGAGGTCACAAGACTGTAACGCATCTGACCCTTCAAGGCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47885312 42 +  51301725 TTCGAGGTCACAAGACTGTAACGCATCTGACCCTGCAAGGCA
i papAnu2.chr19             C 0 M 50
s chlSab2.chr6               47593114 42 +  50890351 TTCGAGGTCACAAGACTGTAACACATCTGACCCTTCAAGGCA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948055 42 +  49145316 TTCAAGGTCAAAAGACTGTAACATATCTAAGACTTCGAGGCA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20051148 42 - 122678785 TTGGTGGTCATGAGACTCTCACGCATCTGACTCTCCAAGGAA
i canFam3.chr1              C 0 C 0

a score=109291.000000
s hg38.chr19_GL949751v2_alt    904607 42 +   1002683 ATGACCAGGATGA-TATGTTTCCC-GCATTGTGTGAGGTCTTGA
s panTro4.chr19              59900102 42 +  63644993 ACGACCAGGATGA-TATGTTTCCC-GCATTGTGTGAGGTCTTGA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829736 44 +  60714840 ATGACCAGAATGATTATGCTTCCCGGCATTGTGTGAGGTCTTGA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342840 42 - 106955855 ATGACCAGAATGA-TATGCTTCCC-ACATTGTGTGAGGTCTTGA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60640048 42 +  64156825 CTGACCAGAAGGA-TATGCTTCCT-GCATTGTGTGAGGTCTTGA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55781197 42 +  59248254 CTGACCAGAAGGA-TATGCTTCCT-GCATTGTGTGAGGTCTTGA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47593156 42 +  50890351 CTGACCAGAAGGA-TATGCTTCCC-GCATTGTGTGAAGTCTTGA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948097 42 +  49145316 GTGCCCAGAACGA-TACGCTTCCT-GCACTGTGTGAGGTCCTGA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20051190 42 - 122678785 ATGACCAGAATGA-TATGCTTCCC-ATTTTGTGTGAAATCTTGA
i canFam3.chr1              C 0 C 0
e papAnu2.chr19              47885354 50 +  51301725 M

a score=795717.000000
s hg38.chr19_GL949751v2_alt    904649 252 +   1002683 GACATCCAG-AATGTAACC-TGCGATATCTCGGGTATATCTC-TTAATCATTAAAATCCTTCATCATACAAACATAAGCTACCACAAGCTTATGTGGCAATTTTGTGTAAATAAGAA--------AAAGTTCGTTATTCTGACTAGAAACAGTA---CTAAGGGCAGATGACCCAGGATGCAGCATGGGCTGAACTTGAGTTTCTACTTGCCTTGAACAGTAAACACCCTGGACAACCATACGTGAGGACCCT------GAATCCAAAGAAA
s panTro4.chr19              59900144 252 +  63644993 GACATCCAG-AATGTAACC-TGCGATATCTCGGGTATATCTC-TTAATCATTAAAATCCTTCATCATACAAACATAAgctaccacaagcttatgtggcaattttgtgtaaataagaa--------aaagttcgttattctgactagaaacagta---ctaagggcagatgacccaggatgcagcatgggctgaacttgagtttctacttgccttgaacagtaaacaacctggacaaccatacgtgaggaccct------gAATCCAAAGAAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56829780 253 +  60714840 GACATCCAGAAATGTAACCTTGCGATATCTCGGGTATATCTCTTTAATCATTAAAATGCTTCATCATACAAAC--Aggccaccacaagcttatatggcaattttgtgtaaataagaa--------aaagTTCGTTATTCTGACTAGAAACAGTA---CTAAGGGCAGATGACCCGGGATGCAGCATGGGCTGAACTTGAGTTTCTACTTGccttgagcagtgaacaacctggacaaccatacgtgaggaccct------gAATCCAAAGAAA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103342882 249 - 106955855 GACATCCAG-AATGTAACC-TGCGATATCTCGGGTATATGTC-TTAATCATTAAAATCCTTCATCATACAAAC---AGCTACCACAAGCTTATATGGCAATTTTGTATAAACaagaa--------aaagttcattattctgactagaaacagta---ctaagggcagatgacccaggatgcagcatgggctgaacttgggtttctacttgccttgagcagtaaacaacctggacaaccatatatgaggaccct------gAATCCAAAGAAA
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60640090 249 +  64156825 GACACCCAG-AATGTAACC-TGCGATATCTCGGGTATATCTC-TTCATCGTTAAAATCCTTCGTCCTACGAAC---AGCTACCACAAGCTTTTGTGGCAATTTTGTGTAAATGAGAA--------AAAGTTTGTTATTCTGACTAGAAACAGTA---CTAAAGGCAGATGACCCAGGAGACAGCATGGGCTGAACTTGAGTTTCTACCTGccttgagcagtaaacaacctggacaaccatacgtgaggaccct------gAATCTGAGGAAA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55781239 249 +  59248254 GACACCCAG-AATGTAACC-TGCGATATCTCGGGTATATCTC-TTCATCGTTAAAATCCTTCGTCATACGAAC---Agctaccacaagcttatgtggcaattttgtgtaaatgagaa--------aaagtttgttattctgactagaaacagta---ctaaaggcagatgacccaggagacagcatgggctgaacttgagtttctacctgccttgagcagtaaacaacctggacaaccatacgtgaggaccct------gAATCTGAGGAAA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47885406 254 +  51301725 GACACCCAG-AATGTAACC-TGCGATATTTCGGGTATATCTC-TTCATCGTCAAAATCCTTCGCCATACAAAC---AGCCGCCACAAGCTCATGTGGCAATTTTGTGTGAATG-GGA--------AAAGTCCGTTATTCTGACTAGAAACAGTA---CTAAAGGCAGATGACCCAGGAGACAGCATGGGCTGAACTCGAGTTTCTACTTGCCTTGAGCAGTAAACAACCTGGACAACCATACGTGAGGACCCTGAATCCGAATCCGAGGAAA
i papAnu2.chr19             M 50 C 0
s chlSab2.chr6               47593198 249 +  50890351 GACACCCAG-AATGTAACC-TGCGATATCTTGGGTATATCTC-TTCATCATTAAAATCCTTCGTCATACAAAC---Agctaccacaagcttctgtggcaattttgtgtaaatgaaaa--------aaagttcgttattctgactagaaacagta---ctaaaggcagatgatccaggagacagcatgggctgaacttgagtttctacttgccttgagcagtaaataacctgggcaaccatacatgaggaccct------gAATCCGAGGAAA
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948139 245 +  49145316 GGCACCCAA-AATGTAACC-TGCAGTATCTCGGGTACACCTC-TTCGTCATGAAAACCCTTCCTCATACCAGC---Agctaccac-agcttatacggcaattttgtgtcaattagga--------aaagttggtga--ctgactagaaacagta---ttaagggcagatgtcccaggatacagcatgggttgaacttgagtttccacttg-cttgagcagtgaacaacctggacaaccatacgtgaggaccct------gAGTCCAGAGAAA
i calJac3.chr22             C 0 C 0
s canFam3.chr1               20051232 262 - 122678785 GACACCCAA-AATGTAATC-TGCAATACCTCAGGTATATCTC-ACCATCACTGAAAACTTCCAGCATGTGAAC-AGAGTTCCTACAAGCCTATATAGCAATTTTGAATAAAGTAGGAGGGGTGGGGAAATCCCTTATTCTGATTAGAAACTGTACTCCTCCAGGCACATGCCACAGAACAGAAAATGGGCTAGACTTTAGTTTCCCCTTGTACTGATCATTGAGCAACCTGGGCAACCATCCACAACAGGCCT------GAGTCCAAAAAAA
i canFam3.chr1              C 0 I 20

a score=762651.000000
s hg38.chr19_GL949751v2_alt    904901 323 +   1002683 CTCCCAGAATC---TTTATC---------ATCttttttttttttttt-------------atgaagtcttgctctgttgcccaggccaaagtgcaatggcacgatcttggctcactgcaacctctgtctcctgggttcaagtaattctgctgcctcagcctcccaagttgctgggattacaggcacccgccaccacgcccggctaatttttgtgcattt-------------agtggagctggtttcgccaca-ttgccaggctgg-------------------------------tctcgaactcatgacctcaggtgacctgccctcctc-aggctcccaaagtgctgggattataggcatgagccaccatgcccagccAGAGTCCTTATG
s panTro4.chr19              59900396 327 +  63644993 CTCCCAGAATC--ttttatc---------atcttttttttttttttttt----------aatggagtcttgctctgttgaccaggccaaagtgcaatggcacgatcttggctcactgcaacctctgtctcctgggttcaagtaattctgctgcctcagcctcccaagttgctgggattacaggcacccgccaccatgcccagctaatttttgtgcattt-------------agtggagctggtttcgccaca-ttgccaggctgg-------------------------------tctcgaactcatgacctcaggtgacctgcccccctc-aggctcccaaagtgctgggattataggcgtgagccaccatgcccagccAGAGTCCTTATG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830033 333 +  60714840 CTCCCAGAATC---tttatc---------ttcctttttttttttttttt----ccttcagatggagtcttgctctgttgcccaagccgaagtgcagtggcacgatcttggctcactgcaacatctgcctcccaggttcaagtaattctgctgcctcagcctcccaagtagctgggattacaggcacccgccaccatacctggctaatttttgcgctttt-------------agtagagatggtttcgccaca-ttgccaggctgg-------------------------------tcttgaactcatgacctcagatgacctgccccccccgaggctcccaaagtgctgggattatagacgtgagccaccatgcccagccAGAGTCCTTATG
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103343131 337 - 106955855 CTCCCAGAATC---TTTATC---------ttctttttttttttttttttttttccttcagatggagtcttggtctgttgcccaggccgaagtgcaatggcacgatcttggctcactgcagcctctgcctcccgggttcaagtaattctgctgcctcagcctcccaagtagctgggatcacaggcacccgccaccacacctggctaatttttgtgctttt-------------agtagagatggttttgccacg-ttgccaggctgg-------------------------------tcttgaactcatgacctcaggtgacctgccccccctgaggctcccaaagcactgggattataagtgtgagccactatgcccagccAGAGTCCTTATG
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60640339 317 +  64156825 TTCCCAGAATC---tttatc---------------tttttttttttttt---------agatgaagtcttgccctgttgcccaggccgaagtacgatggcacaatcttgactcactgcaacctctgcccctcgagttcaactaatt---ctgcctcagcctcgcaagtagctgggattacaggcac---ccaccacgcccggctaacttctgtgctttt-------------agtagagactgttttggcacatttgccaggctgg-------------------------------tcttgaactcatgacctcaggtgacctgccccctctcaggctcccaaagtgctgggattataggcgtgagccactgtgcccagccAGAATCCGTATG
i rheMac3.chr19             C 0 I 7
s macFas5.chr19              55781488 317 +  59248254 TTCCCAGAAtc---tttatc---------------tttttttttttttt---------agatgaagtcttgccctgttgcccaggccgaagtacgatggcacaatcttgactcactgcaacctctgcccctcgagttcaagtaatt---ctgcctcagcctcgcaagtagctgggattacaggcac---ccaccacgcccggctaacttctgtgctttt-------------agtagagactgttttggcacatttgccaggctgg-------------------------------tcttgaactcatgacctcaggtgacctgccccctctcaggctcccaaagtgctgggattataggcgtgagccactgtgcccagccAGAATCCTTATG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47885660 319 +  51301725 TTCCCAgagtc---tttatc------------ttttttttttttttttt---------agatgaagtcttgccctgttgcccaggccgaagtACGATGGCACAATctttactcactgcaacctctgcccctcgggttcaagtaatt---ctgcctcagcctcccaagtagctgggattacaggcac---ccaccacgcccggctaacttctgtgctttt-------------agtagagactgtttCGGCACATttgccaggctgg-------------------------------tattgaactcatgacctcaggtga-ctgccccctctcaggctcccaaagtgctggcattataggcgtgagccaccgtgcccagccagaatccttatg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47593447 331 +  50890351 TTCCCAGAATC---TTTTGCtttttttttttttttttttttttttttgt---------agatgaagtcttgccctgttgcccaggccaaagtgcaatggcatgatcttgactcactgcaacctctgcctccagggttcaagtaatt---ctgcctcagcctcccaagtagctgggattacaggcac---ccaccacgcccggctaacttctgtgctttt-------------agtagagact-tgtcggcacatttgccaggctgg-------------------------------tattgaactcatgacctcaggtgacctgccccctctcagcctcccaaagtgctgggattataggtgtgagccaccgtgcccagccAGAATCCTTATG
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948384 354 +  49145316 CTCCCAGAATCATCTTTACC---------tttttttttttttttttttt-----tttgagatgga----------gttgtccaggctggaatgcagtggcatgatctcagctcactgaaacctctgcctcccatgttcaagcaattctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaaaacacccagctaacttttgtgcttttttttttcttttgaggcggag----tcttgctctg-tcaccaggctggaatgtggtagtgcaatcttggctcaccgcaacctctgcctcctgggttcaagtga-ttctcctgtctcagccttctgagtagctgggactgcagatatgaaccaacatgcccagctaa----------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20051494  20 - 122678785 I

a score=-2283.000000
s hg38.chr19_GL949751v2_alt    905224 31 +   1002683 TTTTGGTTTTGGTTTTGGttttttctttt------tc
s panTro4.chr19              59900723 29 +  63644993 TTTTGGTTTTGGttttttctttttctttt--------
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830366 23 +  60714840 TTTTGGttttggt------tttttctttc--------
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103343468 37 - 106955855 TTTTGGTTCTGGTTTTTTCTTTTCCTTTTtttttttt
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55781805  8 +  59248254 -------------TTCCCttt----------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47885979 16 +  51301725 -------------ttcccttttttttttt--------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47593778 24 +  50890351 -------------TTCCCTttttttttttgttttttt
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948738  5 +  49145316 -------------------ttttt-------------
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20051494 20 - 122678785 I
e rheMac3.chr19              60640656  7 +  64156825 I

a score=88794.000000
s hg38.chr19_GL949751v2_alt    905255 33 +   1002683 ttttttctttttgagatggagtctcgctctgtc
s panTro4.chr19              59900752 33 +  63644993 ttctttttttttgagatggagtctcgctctgtc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830389 33 +  60714840 ttttttttttttgagatggagtctcgctctgtc
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10             103343505 33 - 106955855 ttttttttttttgaaatggagtctcactctgtc
i nomLeu3.chr10             C 0 M 613
s rheMac3.chr19              60640663 33 +  64156825 ttttttttttttgagatggagtcttgctctgtc
i rheMac3.chr19             I 7 C 0
s macFas5.chr19              55781813 33 +  59248254 ttttctttttttgagatggagtcttgctctgtc
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47885995 33 +  51301725 ttttttttttttgagatggagtcttgctctgtc
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47593802 33 +  50890351 tgttttttttttgagatggagtcttgctctgtc
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948743 33 +  49145316 gtatttttagtagagatggagtttcaccatgtt
i calJac3.chr22             C 0 C 0
e canFam3.chr1               20051494 20 - 122678785 I

a score=408333.000000
s hg38.chr19_GL949751v2_alt    905288 221 +   1002683 acccaggctggagtgcgttggtatgatctcaggtcactgcagcctccacctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattac--aggtgcacaccaccacacctggttaa-tttttgtattattagtagagatggagttttaccacattggccaggctggtctcgaactcatgacctcaggtgatctacccccc-cacccccacc
s panTro4.chr19              59900785 221 +  63644993 accaaggctggggtgcaatggtatgatctcaggtcactgcagcctccacctcccaggttgaagtgattctcctgcctcagcctcctgagtagctgggattac--aggtgcataccaccacacctggttaa-tttttgtattattagtagagatggagttttaccacattggccaggctggtctcgaactcatgacctcaggtgatccacccgcc-cacccccacc
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830422 216 +  60714840 acccaggctggagtgcaatggtataatctgagctcactgcagcctccacctaccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattac--aggtgcacaccaccacacctggttaa-tttttgtattcttagtagagatggagttttaccacattggccaggctggtctcgaactcatgacctcaggtgatccacc--cc-caccccc---
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60640696 211 +  64156825 tcccaggctggagtgcaatggcatgatctcagctcattgcaacctctacctcctgggttcaagtgattctcctgcatcagcctcctgagtagctgggagtac--aagcacgcgccaccatacctggttga-tttttgtattcttagtagaaatggggttttatcacattggccaggctggtctcgaactcatgacctcaggtgatccatcctcc-----------
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55781846 211 +  59248254 tcccaggctggagtgcaatggtatgatctcagctcattgcaacctctacctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattac--aagcacgcgccaccatacctggttaa-tttttgcattcttagtagaaatggggttttatcacattggccaggctggtctcgaactcatgacctcaggtgatccatcctcc-----------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47886028 211 +  51301725 tcccaggctggagtgcaatggtatgatctcagctcattgcaacctctacctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattac--aagcacgcgccaccatacctggttaa-tttttgtattcttagtagaaatagggttttatcacattggccaagctggtctcgaactcatgaccccaggtgatccatcctcc-----------
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47593835 211 +  50890351 tcccaggctggagtgcaatggtatgatctccgctcattgcaacctctacctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattac--aagcacgcgccaccatacctagttaa-tttttgtattcttagtagaaatggggttttatcacattggccaggctggtctcgaactcatgacctcaggtgatccatcctcc-----------
i chlSab2.chr6              C 0 C 0
s calJac3.chr22              45948776 193 +  49145316 ggccaggctg-------------------------------atctcgaactcctgacctccaatgacccacccaccttggccttcaaaat-gctgggattaccaaagtgtgagccactgcgcctggctgattttttgtatttttagtagagacagggtttcaccatgttggccagtctggtctcaaactcctgacctcaagtgatctgctcacctcagccttacc
i calJac3.chr22             C 0 N 0
e canFam3.chr1               20051494  20 - 122678785 I
e nomLeu3.chr10             103343538 613 - 106955855 M

a score=92288.000000
s hg38.chr19_GL949751v2_alt    905509 61 +   1002683 ccaccccgccgtcggcctcccaaagtgaggcatgagccaccgtgcccagccCAGAATCTTT
s panTro4.chr19              59901006 61 +  63644993 ctaccccgccgtcggcctcccaaagtgaggcgtgagccaccgtgcccagccCAGAATCTTT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830638 50 +  60714840 -----------ccggcctcccaaagtggggtgtgagccaccgtgcccagccCAGAATCTTT
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60640907 50 +  64156825 -----------tcggcctcccaaactggggcgtgagccaccgtgcccagccCAGAATCTTT
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55782057 50 +  59248254 -----------tcggcctcccaaagtggggcgtgagccaccgtgcccagccCAGAATCTTT
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47886239 50 +  51301725 -----------tcggcctcccaaagtggggcgtgagccactgtgcccggcccagaatcTTT
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47594046 50 +  50890351 -----------tcggcctcccaaagtggggcgtgagccaccgtgcccggccCAGAATCTTT
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051494 20 - 122678785 I
e nomLeu3.chr10             103343538 613 - 106955855 M

a score=472308.000000
s hg38.chr19_GL949751v2_alt    905570 242 +   1002683 ATCTTCTATCAGAGATCATTCACTCATGGTTCATGCTTCTCCTGTATGATGATTCAGAATACCAGCTATTG--------ACATTTTTCAAGCAAGAACCCTTCAGGAACATCAAGTTGCCCCTTTTCTGTTAGTCCTCTGGTTTGAGAGCTCTCCCCTTGGGAAGCTGTCCA-GTGGCTGCCCAGGCGATGAGAACCTACATGCATCATGGGGTTCCATGAAGCCTCACTTGGCCACACTGGTGTAGTAGG
s panTro4.chr19              59901067 240 +  63644993 ATCTTCTCTCAGAGATCATTCACTCATGGTTCATGCTT---CTGTATGATGATTCAGAATACCAGCTATTG--------ACATTTTTCAAGCAAGAACCCTTCAGGAACATCAAGTTGCCCCTTTTCTGTTAGTCCTCTGGTTTGAGAGCTCTCCCCTTGGGAAGCTGTCCACGTGGCTGCCCAGGTGATGAGAACCTACATGCGTCATGGGGTTCCATGAAGCCTCACTTGGCCACACTGGTGTAGTAGG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830688 235 +  60714840 ATCTTCTATC--AGATCATTCACTCATGGTTCATGCTTCTCCTGTATGATGATTCAGAATACCAGCTATTG--------ACATTTTTCAAGCAAGAACCCTTCAGGAACATCAAGTTGCCCCTTTTCTGTTAGTCCTCTA--TTGAGAGCTCTCCCCTTGGGAAGCTGTCCACGTGGCTGCCCAGGTGATGAGAACCATCATGCA----AGGAGTTCATGAAGCCTCACTTGGCCACATTGGTGTAGTAGG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60640957 241 +  64156825 AGCTTCTGTCAGAGATCATTCAC-CATGGTTCATGCTTCT-CTTTATGATGATTCAGAATACCGGCTATTG--------ACATTTTTCAAGCAAGATCCCTTCAGGAACATCGAGTTCCCCCTTTTCTGTTAGTCCTCTGGTTTGAGAGCTCTCCCCTTGGGAAGCTCTCCACGTGGCTGCCCAGGTGATGGGAACCGTCATGTGTCATGGGGTTCCGTGGAGCCTCACTTGGCCACACTGGCATAGTAGG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55782107 242 +  59248254 AGCTTCTGTCAGAGATCATTCAC-CATGGTTCATGCTTCTGCTGTATGATGATTCAGAATACCAGCTATTG--------ACATTTTTCAAGCAAGATCCCTTCAGGAACATCGAGTTGCCCCTTTTCTGTTAGTCCTCTGGTTTGAGAGCTCTCCCCTTGGGAAGCTCTCCACGTGGCTGCCCAGGTGATGGGAACCATCATGTGTCATGGGGTTCCGTGGAGCCTCACTTGGCCACACTGGCATAGTAGG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47886289 242 +  51301725 AGCTTCTGTCAGAGATCATTCAC-CATGGTTCATGCTTCTCCTGTATGATGATTCAGAATACCAGCTATTG--------ACTTTTTTCAAGCAAGATCCCTTCAGGAACATCGAGTTGCCCCTTTTCTGTTAGTCCTCTGGTTTGAGAGCTCTCCCCTTGGGAAGCTCTCCACGTGGCTGCCCAGGTGATGGGAACCATCATGTGTCATGGGGTTCCATGGAGCCTCACTTGGCCACACTGGCATAGTAGG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47594096 241 +  50890351 AGCTTCTGTCAGAGATCATTCAC-CATGGTTCATGCTTCTCCTGTATGATGATTCAGAATACCGGCTATTG--------ACATTTTTCAAGCAAGATCCCTTCAGGAACAGCGAGTTGCCCCTTTTCTGTTAGTCCTCTGGTTTGAGAGCTCTCCCCTTGGGAAGCTCTCCACGTGGCTGCCCAGGTGAT-GGAACCATCATGTGTCATGGGGTTCCATGGAGCCTCACTTGGCCACACTGGCATAGTAGG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20051514 246 - 122678785 ATCCTCTATCAGAGAGAATTGGTTTATGGTT--TGTTTCTCCTGTC--ATGATTCAGAATACCAGATTCTGTCCAGTATCCTCTGTCCAGGCAAAGATACTTTGGGAGCAACAGATTTTCCTTCTCTTGGTAGTCCTCTGGGTTGAAAGATCTCCCCTTGGGATATTCTCCACATGATAGCTCTGGTGAGTATTGTCATTACTCATCATGGGGTTCCATTGATCCTCGCTTGACCACATTTG-ATAATAGG
i canFam3.chr1              I 20 I 2524
e nomLeu3.chr10             103343538 613 - 106955855 M

a score=83448.000000
s hg38.chr19_GL949751v2_alt    905812 53 +   1002683 TGGTCATTGGCCTCAAATTATTGCCCTGggccaggcgcagtggctcacgcctg
s panTro4.chr19              59901307 53 +  63644993 TGGTCATTGGCCTCAAATTATTGCCCTGggccaggcgcagtggctcacgcctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830923 52 +  60714840 TGGTCATTGGCCTCAAATTATTGCCCTGggccaggcgcagtggctcacg-ctg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60641198 51 +  64156825 TGGTCACTGGCCTC--ATTGTTCCCCTGggccaggcacagtaggtcacgtctg
i rheMac3.chr19             C 0 I 347
s macFas5.chr19              55782349 51 +  59248254 TGGTCACTGGCCTC--ATTGTTCCCCTGggccaggcacagtaggtcacgtctg
i macFas5.chr19             C 0 I 16
s papAnu2.chr19              47886531 53 +  51301725 TGGTCACTGGCCTCAAATTGTTCCCCTGGGCCAAACACAGTAGGTCACgcctg
i papAnu2.chr19             C 0 I 16
s chlSab2.chr6               47594337 53 +  50890351 TGGTCACTGGCCTCAAATTGTTCCCCTGggccaggcacagtaggtcacgcctg
i chlSab2.chr6              C 0 I 16
e canFam3.chr1               20051760 2524 - 122678785 I
e nomLeu3.chr10             103343538 613 - 106955855 M

a score=462741.000000
s hg38.chr19_GL949751v2_alt    905865 383 +   1002683 ggaggccgaggtgggtggatcacttgaggtcaggagttcaagaccggcctggtcaacatggtgaaactctgtctctactaataatacaaaaa-----ttagctgggcatgttggcgcacgcctgtagtcccagctactcaggaggctgaggcaggagcatcatttgaacctgagaggcggaggttgcagtgagctgagatcacaccaccgcactccagtctgggcaacagtgtgagactgtctc-----------aaaaaaaaaaaaaaaaaTCTTggctgggtgcggtagctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcac--aaggtcaggagttcaagaccagcctggccaacatggtgaaaccccacgtctactaaaaa
s panTro4.chr19              59901360 386 +  63644993 ggaggccgaggtgggtggatcacttgacgtcacgagttcaagaccggcctggtcaacatggtgaaactctgtctctactaataatacaaaaa-----ttagctgggcatgtttgcgcacacctgtagtcccagctactcaggaggctgaggcgggagcatcatttgaacctgagaggcggaggttgcagtgagctgagatcacaccaccgcactccagtctgggcaacagtgtgagactgtctcaa--------aaaaaaaaaaaaaaaaaaaCTTggctgggtgcggtagctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcac--aaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatgtctactaaaaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56830975 398 +  60714840 ggaggccgaggcgggtggatcacttgaggtcaggagttcaagaccagcctggtcaacatagtgaaaccccgtctctactaataatacaaaaattagcttagctgggcatgttggcgcgcgcctgtagtcccagctactcaggaggctgaggcaggagaatcatttgaacctgagaggcggaggttgccgtgagctgagatcacaccaccgcactccagcctgggcaacagtgtgagactgtctcaaaaataaataaataaataaataaaGAGTCTTggccgggtgcggtggctcatgcctgt-atcccagcactttgggaggccaaggtgggtggatcac--gaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatgtctactaaaaa
i ponAbe2.chr19             C 0 C 0
s macFas5.chr19              55782416 386 +  59248254 ggaggctgaggc-agtgaatcacttgaagtcaggagttagaaaccagcctggttaacatggtgaaaccccgtctctactaataatacaaaaa-----ttagcgaggcgtgttggcacacgcctgtggtcccagttactcaggaggcggaggcaggagaatcatttaaacctgagaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctggtcaacagtgcgagactatctca---------aaaaaaaaaaaaaaaaaaTCTTgaccgggtgcggtggctcatgcctgtaatgacagcacttcaggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccagtctggccaacatggtgaaaccccatctctactaaaaa
i macFas5.chr19             I 16 C 0
s papAnu2.chr19              47886600 383 +  51301725 ggaggctgaggc-agtgaatcacttgaagtcaggagttagaaaccagcctggttaacatggtgaaaccccgtctctactaataatacaaaaa-----ttagcggggcgtgttggcacacgcctgtagtcccagttactcaggaggcggaggcaggagaatcatttaaacctgagaggcggaggttgcagtgagctgagatcacaccactgcactccagcctggtcaacagtgcgagactatctc------------aaaaaacaaaaaaaaatcttggccgggtgcggtggctcatgcctataatcccagcacttcaggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccggtctggccaacatggtgaaaccccatctctactaaaaa
i papAnu2.chr19             I 16 C 0
s chlSab2.chr6               47594406 385 +  50890351 ggaggctgaggc-agtgaatcacttgaagtcaggagttagaaaccatcctggttaacatggtgaaaccccgtctctactaataatacaaaaa-----ttagcggggcgtgttggcacacgcctgtagtcccagttattcaggaggcagaggcaggagaatcatttaaacctgagaggcggaggttgcagtgagctgagatcacaccactgcactccagcctggtcaacagtgcgagactatctc----------aaaaaaaaaaaaaaaaaaTCTTggccgggtgcggtggctcatgcctataatcccagcatttcaggaggccaaggtgggtggatcacttgaggtcaggagttcaagaccagtctggccaacatggtgaaaccccatctctactaaaaa
i chlSab2.chr6              I 16 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e nomLeu3.chr10             103343538 613 - 106955855 M
e rheMac3.chr19              60641249 347 +  64156825 I

a score=266322.000000
s hg38.chr19_GL949751v2_alt    906248 152 +   1002683 tacaaaaacattagctgggcatggtggcgcgtgcctgtaatcccagctactcatggaggctgatgcaagagaattgcttgaacctaggaggcagaggtagcagtgagccaagatcacgccattgcactccagcctgggcaacagagcaaaac
s panTro4.chr19              59901746 152 +  63644993 tagaaaaacattagccgggcatggtggcgcgtgcctgtaatcccagctactcgtggaggctgatgcaagagaattgcttgaacctaggaggcagaggtagcagtgagccaagatcacaccattgcactccagcctgggcaccagagcaaaac
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56831373 149 +  60714840 tacaaaaaaattagccgggcatggtggcgcgtgcctgtaatcccagctactt---gaggctgatgcaagagaattgcttgaacctaggaggcagaggtagcagtgagccaagatcatgccattgcactccagcctgggcaacagagcaaaac
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60641596 152 +  64156825 tacaaaaatattagccgggcatggtggcaggcgcctgtaatcccagctactcgtgggggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatcacgccattgtactccagcctgggcaacagagcaaaac
i rheMac3.chr19             I 347 C 0
s macFas5.chr19              55782802 152 +  59248254 tacaaaaatattagccgggcatggtggcaggcgcctgtaatcccagctactcgtgggggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtaagccaagatcacgccattgtactccagcctgggcaacagagcaaaac
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47886983 149 +  51301725 tacaaaaatattagccgggcatggtggcaggcacctgtaatcccagctactc---ggggctgaggctggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatcacgccattgtactccagcctgggcaacagagcaaaac
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47594791 152 +  50890351 tacaaaaatattagctgggcatggtggcgggtgcctgtaatcctagctactcgtgggggttgaggcaggagaattgcttgaacccaggaggcagaggttggagtgagccaagatcacgccattgtactccagcctgggcaacagagcaaaac
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e nomLeu3.chr10             103343538 613 - 106955855 M

a score=856502.000000
s hg38.chr19_GL949751v2_alt    906400 403 +   1002683 tccatctcgaggacag-aaaaaaaaTTGATTGCTCTGGCTCTACTGAT-ACAATCTTAGGCTGCTTAATGGGATCTT------AGTTGAATAGGATGCTGTACATCTTACAGGTATTGGAAGGTTG-AATGAAA------CCAAGCCCATGCATTCAATAGTGGCTGCTATCATTACTAACCGTTGCAATTACCCTCTTTTCTT-TTTGCCTGAGAATAATGGGATGCAGGGTGAGGGGGAATATTGGGTGAATTAAAGATTTGGGTCACTAAtttcttt-ctttttttctcaagatatagtcttgctctgtctcctaggctggagtgcagtgccacaatcttggttcactgcaacctctgcctcccgggttcaagtgattcttctccgtcaacctcccaagtagctgggattacaggca
s panTro4.chr19              59901898 406 +  63644993 tccatctcgaggacag-aaaaaaaaTTTATTGCTCTGGCTCTACTGAT-ACAATCTTAGGCTGCTTAATGGGATCTTC---TCAGTTGAATAGGATGCTGTACATCTCACAGGTATTGGAAGGCTG-AATGAAA------CCAAGCACATGCATTCAATAGTGGCTGCTGTCATTACTAACCGTTGCAATTACCCTCTTTTCTT-TTTGCCTGAGGATAATGGGATGCAGGGTGAGGGGGAATATTGGGTGAATTAAAGATTTGGGTAACTAAtttcttt-ctttttttctcgagatatagtcttgctctgtctcctaggctggagtgcagtgccacaatcttggttcactgcaacctctgcctcccgggttcaagtgattcttctccgtcaacctcccgagtagccgggattacaggca
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56831522 407 +  60714840 tccatctcgaggacag-aaaaaaaaTTTATTGTTCTGGCTCTACTGAT-GAAATCTTAGGCTGCTTAATGGGATCTTC---TCAGTTGAATAGGATGCTGTACATCTCACAGGTATTTGAAGGTTG-AATGAAACCAAATCCAAGCACATGCATTCAATAGTGGCTGCTGTCATTACTAACCATTGC-ATTACCCTCTTTTCTTGTTTACATGAGAATAATGGAATGCAGGGTGAGGGGGAATATTGGGTGAATTAAAGATTTGGGTCACTAAttt------tttttttctcgagatatagtcttgctctgtctaccaggctggagtgcagtgccacagtcttggttcactgcaacctctgcctcctgggttcaagtgattcttctccgtcaacctctcgagtagctgggattacaggcA
i ponAbe2.chr19             C 0 M 186
s nomLeu3.chr10             103344151 408 - 106955855 TCCATCTTGAGGACAGAAAAAAAAATTTATTGCTCTGGCTATACTGAT-ACAATCTTAGGCTGTTTAATGGGATCTTC---TCAGTTGAATAGGATGCTGTACATCTCACAGGTATT-GAAGGTTG-AATGAAACCAAATCCAAGCACAGGTATTCAATAGTGGCTACTGTCATTACTAACCATTACAATTACCCTCTTTTCTTTTTTACATGAGAATAATGGGATGCAGGGTGAGGGGGAATATTGGGTGAATTGAAGATTTGGGTCACTAAtttcttt-cttttttcctcgagatatagtcttgctctgtctcccaggc-----tgcagtgccacaatcttggttcactgcaacctctgcctcctgggttcaagtgattcttctgcgtcagcctcccaagtagctgggattacaggca
i nomLeu3.chr10             M 613 C 0
s rheMac3.chr19              60641748 408 +  64156825 tccatctcaagggtaa-aaaaa------aTTGCTCTGGCTCTACTGATAACGATCCTAGGCTGCTTAATGGGATCTTCTTGTCAGTTGAATGGGATACTGTACGTCTCACAGGTATTTGAAGGTTGAAATGAAACCAGATCCAAGCCCATGTATTCAATAGTGGCTGCTGTCGTCACTAACCACTACAATTACCCTCTTTTCTTTGTTACATGAGAATAATGGGGTACAGGGTGAGGGGGAACATCGAGTAAATTAAAGATGTGGGTCACTAATCTAt---ttttttttctcgag--atagtcttgctctgtctcccaggctggagtgcagtgccacaatcttggttcactgcaacctcggcctcccaggttcaagtgattctcctgcctcaacttcctgagtagctgggattacaggca
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55782954 407 +  59248254 tccatctcgagggtaa-aaaaa------aTTGCTCTGGCTCTACTGATAACGATCCTAGGCTGCTTAATGGGATCTTCTTGTCAGTTGAATGGGATACTGTACGTCTCACAGGTATTTGAAGGTTGAAATGAAACCAGATCCAAGCCCATGTGTTCAATAGTGGCTGCTGTCGTCACTAACCACTACAATTACCCTCTTTTCTTTGTTACATGAGAATAATGGGGTACAGGGTGAGGGGGAACATCGAGTAAATTAAAGATGTGGGTCACTAATCTA----ttttttttctcgag--atagtcttgctctgtctcccaggctggagtgcagtgccacaatcttggttcactgcaacctcggcctcccaggttcaagtgattctcctgcctcaacttcctgagtagctgggattacaggca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47887132 411 +  51301725 tccatctccagggtaa-aaaaa------aTTGCTCTGGCTCTACTGATAACGATCCTAGGCTGCTTAATGGGATCTTCTTGTCAGTTGAATGGGATACTGTACATCTCACAGGTATTTGAAGGTTGAAATGAAACCAGATCCAAGCCCATGTATTCAATAGTGGCTGCTGTCGTCACTAACCACTACAATTACCCTCTTTTCTTTGTTACATGAGAATAATGGGGTACAGGGTGATGGGGAACATCGAGTAAATTAAAGATGTGGGTCactaatctatttcttttttttctggag--gtagtcttgctctgtctcccaggctggagtgcagtgccacaatcttggttcactgcagcctcggcctcccaggttcaagtgattctcctgcctcaacttcctgagtaactgggattacaggca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47594943 409 +  50890351 tccatctcgagggtaa-aaaaa------aTTGCTCTGGCTCTACTGATAACGATCCTAGGCTGCTTAATGGGATCTTCTTGTCAGTTGAGTGGGATACTGTACATCTCACAGGTATTTGAAGGTTGAAATGAAACCAGATCCAAGCCCACGTATTCAATAGTGGCTGCCGTCATCACTAACCACTACAATTACCCTCTTTTCTTTGTTACATGAGAATAATGGGGTACAGGGTGAGGGGGAACATCGAGTAAattacagatgtgcgtcactaatctatc--tcttttttcttgag--atagtcttgctctgtctcccaggctggagtgcagtgccacaatcttggttcactgcaacctcggcctcccaggttcaagtgattctcctgcctcaacttcctgagtagctgggattacaggca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I

a score=597560.000000
s hg38.chr19_GL949751v2_alt    906803 360 +   1002683 cccacctgtatttttgtatttctagtattttgtatttctagtagagacagggttacgccatgctggtggccagggtggtctcaaactcctgacctcgggcaatccaccacacccagctaa-tttttggtatatttagtagagccggggtt--tcaccgtgttggctgggctggtctcgaactcctgacctcaagtga--CATCCATCTTCCAAAATgctgggattacagccatgtgccaccacgcccagctaattcttgtatttttaggagaaatggggtttcatcatgttgttccggctggtcttaaactcctggcctcatgatccacctgccttggcctgccaaagtcctgggattacaggca
s panTro4.chr19              59902304 360 +  63644993 cccacctgtatttttgtatttctagtattttgtatttctagtagagacagggttacaccatgctggtggccagggtggtctcaaactcctgacctcgggcaatccaccacacccagctaa-tttttggtatatttagtagagccggggtt--tcaccgtgttggctgggctggtctcgaactcctgacctcaagtga--CATCCATCTTCCAAAATgctgggattacagccatgtgccaccacgcccagctaattcttgtatttttaggagaaatggggtttcatcatgttgtcccggctggtcttaaactcctggcctcatgatccacctgccttggcctgccaaagtcctgggattacaggca
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103344559 362 - 106955855 cccggctgtattcttgtatttctaatattttgtatttctagtagagacagggttacaccatgctggtggccaaggtggtctcaaactcctgacctcaggcaatccaccacacccagctaa-tttttggtatatttagtacagccggggttaacaaacatgttggccaggctggtctcgaactcctgacctcaagtga--cacccatctTCCAAAATgctgggattacagccatgtgccaccatgcccagctaattcttgtatttttaggagaaacagggtttcatcatgttgtcctggctggtcttaaattcttggcctcatgatccacctgccttggcctgccaaagtgctcggattacaggca
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60642156 346 +  64156825 cccagctgtat----------------ttttgtatttctagtagagacagggttacgccatgctggtggccagggtggtctcaaactcctgacctcggg-aatcccccacgcccagctaatttttttatgtctttagtagagatggggtt--tcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgccttccaaaatgctgggattacagccacgtgccaccctgcccagctaattcttgtatttttaggagaaacggggtttcatcatgttgtcctgcctggtcttaaactcctcgcctcatgatctacctgccttggcctgccaaagtactgggattacaggcA
i rheMac3.chr19             C 0 M 331
s macFas5.chr19              55783361 346 +  59248254 cccagctgtat----------------ttttgtatttctagtagagacagggttacgccatgctggtggccagggtggtctcaaactcctgacctcggg-AATCCCCCACGCCCAGCTAAtttttttatgtctttagtagagatggggtt--tcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccatctgccttccaaaatgctgggattacagccacgtgccaccctgcccagctaattcttgtatttttaggagaaacggggtttcatcatgttgtcctgcctggtcttaaactcctcgcctcatgatctacctgccttggcctgccaaagtactgggatcacaggca
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47887543 345 +  51301725 cccagctgtat----------------ttttatatttctagtatagacagggttacaccatgctagtggccagggtagtctcaaactcttgaccttggg-aatcccccacgcccagctaa-ttttttatgtctttagtagagacggggtt--tcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgccttccaaaatgctgggattacagccacgtgccaccctgcccagctaattcttgtagtTTTAGGAGaaacgggatttcatcatgttgtcctggctggtcttaaactcctcgcctcatgatctacctgccttggcctgccaaagtactgggatcacaggca
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47595352 345 +  50890351 cccagctgtat----------------ttttgtatttttagtagagacagggttacaccatgctggtggccagggtagtctcaaactcctgacctcggg-aatcccccacgcccagctaa-ttttttatgtctttagtagagacggggtt--tcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgccttccaaaatgctgggattacagccacgtgccaccctgcccagctaattcttgtatttttaggagaaacggggtttcatcatgttgtcctggctggtcttaaactcctcgcctcatgatctacctgccttggcctgccaaagtactgggatcacaggca
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e ponAbe2.chr19              56831929 186 +  60714840 M

a score=15048.000000
s hg38.chr19_GL949751v2_alt    907163 12 +   1002683 tgagccactgtg
s panTro4.chr19              59902664 12 +  63644993 tgagccactgtg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103344921 12 - 106955855 tgagccactgtg
i nomLeu3.chr10             C 0 C 0
s macFas5.chr19              55783707 12 +  59248254 tgagccaccatg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47887888 12 +  51301725 tgagccaccatg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6               47595697 12 +  50890351 tgagccaccatg
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e ponAbe2.chr19              56831929 186 +  60714840 M
e rheMac3.chr19              60642502 331 +  64156825 M

a score=533922.000000
s hg38.chr19_GL949751v2_alt    907175 363 +   1002683 cccagccACTCATTTCTTATGAATTTATTCTAACACATTTTCCGGATGAA--CAGGGCACCTTGAAACATAGGTTAGTGggctgggta--------tggtggctcctgcctgtaatcccagtactttgggaggcctaggctggtgtatcgcttgaagtcaggagttt---tttgttttgagacggagtcttgctctgtcgcccaggctagagtgcagtgg------------------------------agtgatctcggcttactgcaacctccgcctcctgggttcaagtgattctcttgcctcagcctcctgagtagctgggactacaggcacgtgtcgccacgcccatctaa----------cttttgtatgtttagtagagccggggtttcaccatgttggccaggatgg
s panTro4.chr19              59902676 363 +  63644993 cccagccACTCATTTCTTATGAATTTATTCTAACACATTTTCCGGATGAA--CAGAGCACCTTGAAACATAGGTTAGTGggctgggta--------tggtggctcctgcctgtaatcccagtgctttgggaggcctaggctggtgtatcgcttgaagtcaggagttt---tttgttttgaaacggagtcttgctctgtcgcccaggctagactgcagtgg------------------------------agtgatctcggcttactgcaacctccgcctcctgggttcaagtgattctcttgcctcagcctcctgagtagctgggactacaggcacgtgtcaccacgcccatctaa----------cttttgtatgtttagtagagccggggtttcaccatgttggccaggatgg
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103344933 370 - 106955855 cctagccACTCATTTCTTATGAATGTATTCTAACACATTTTCTGGATGAA--CAGAGCACCTTGAAACATAGGTTAGTGGGCTGGGCACTGTGGGTTAgtggctcatgcctgtaatcccagtactttgggaggcctaggctggtgtatcacttgaagtcaggagttt---tttgtattgagacagagtcttgctctgttgcccaggctagagtgcagtgg------------------------------agtgatctcggctcattgtaacctctgcctcctgggttccagtgattctcttgcctcagcctcccgagtagctgggactacaggcacgtgtcgccacgcccagctaa----------ttttggaatg-ttaataaaaatgggggttctccctggttgtcagactgg
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19              60642833 345 +  64156825 CCCAGCCACTCATTTCTTACGAATTTATTCTAACACATTTTCCGGATGAACACAGAGCACCTTGAAACGTAGGTTAGTGgactgggca--------tggtgcctcatacctgtaatcccagtactttgggaggcctaggctggtgtatcacttgaagtcaggagtttttgtttgttttgagatggagtcttgctctgtcacccaggctggagtgcagtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------tcccaggttcaagca---attctgccttagcctcctgagtagttgggactacaggtgcgcgccaccacacccagctaa----------ttttcgtatgtttagtagagctggggtt---------------------
i rheMac3.chr19             M 331 C 0
s macFas5.chr19              55783719 343 +  59248254 cccagccACTCATTTCTTACGAATTTATTCTAACACATTTTCCAGATGAACACAGAGCACCTTGAAACGTAGGTTAGTGgactgggca--------tggtgcctcatacctgtaatcccagtactttgggaggcctaggctggtgtatcacttgaagtcaggagtttttgtttgttttgagatggagtcttgctctgtcacccaggctggagtgcagtgg------------------------------agtgatcttggctcactgcaacctccacctcctgggttcaatt----ctcttgcctcagcctcctgagtagctgggactacaggcatgcgccaccacacccagctaa----------ttttcgtatgtttagtagagctggggtt---------------------
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              47887900 374 +  51301725 cccagccactcaTTTCTTACGAATTTATTCTAACACATTTTCCGGATGAACGCAGAACACCTTGAAACGTAGGTTAGtggactgggca--------tggtgcctcatacctgtaatcccagtactttgggaggcctaggctggtgtatcacttgaagtcaggagtttttgtttgttttgagatggagtcttgctctgtcgcccaggctggagtgcagtgg------------------------------agtgatcttggctcactgcaacctccacctcctgggttcaatt----ctcttgcctcagcctcctgagtagctgggactacaggcatgcgccaccacgcccagctaatttcttttcttttctttttttttttttgagacggagtctcgctctgtcgcccaggctgg
i papAnu2.chr19             C 0 I 563
s chlSab2.chr6               47595709 343 +  50890351 cccagccACTCATTTCTTACGAATTTATTCTAACACATTTTCCAGATGAACACAGAGCACCTTGAAACATAGGTTAGTGgactgggca--------tggtgcctcctacctgtaatcccagtactttgggaggcctaggctggtgtatcacttgaagtcaggagtttttgtttgttttgagatggagtcttgctctgtcgcccaggctggagtgcagtgg------------------------------agtgatcttggctcactgcaacctccacctcctgggttcaatt----ctcttgcctcagcctcctgagtagctgggactacaggcatgtgccaccacgcccagctaa----------ttttcgtatgtttagtagagctggggtt---------------------
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e ponAbe2.chr19              56831929 186 +  60714840 M

a score=22839.000000
s hg38.chr19_GL949751v2_alt    907538 18 +   1002683 tctcaaactcctgacctc
s panTro4.chr19              59903039 18 +  63644993 tctcaaactcctgacctc
i panTro4.chr19             C 0 C 0
s nomLeu3.chr10             103345303 18 - 106955855 tcccaaactcccaacctc
i nomLeu3.chr10             C 0 M 3096
s rheMac3.chr19              60643178 18 +  64156825 tctcgaactcctgacctc
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784062 18 +  59248254 tctcgaactcctgacctc
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47596052 18 +  50890351 tctcgaactcctgacctc
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e ponAbe2.chr19              56831929 186 +  60714840 M
e papAnu2.chr19              47888274 563 +  51301725 I

a score=54710.000000
s hg38.chr19_GL949751v2_alt    907556 64 +   1002683 ctgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccattgccccggccA
s panTro4.chr19              59903057 64 +  63644993 ccgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccattgccccggccA
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60643196 64 +  64156825 gtgatctgcccgcctcggcctcccaaagtgttgggattacaggtgtgcgccattgccctggccA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784080 64 +  59248254 gtgatctgcccgcctcggcctcccaaagtgttgggattacaggtgtgcgccattgccctggccA
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47596070 64 +  50890351 atgatctgcccgcctcggcctcccaaagtgttgggattacaggtgtgcgccattgccctggccA
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e ponAbe2.chr19              56831929 186 +  60714840 M
e nomLeu3.chr10             103345321 3096 - 106955855 M
e papAnu2.chr19              47888274 563 +  51301725 I

a score=284334.000000
s hg38.chr19_GL949751v2_alt    907620 234 +   1002683 aagttaggagtttgagaccagcctggccaacatggtaaaaccccatctctactaaaaaatacaaaaattagccaggcaagatggcatttgcctgtaatcccagctactcaggaggctgaggcgggagaatctcttgaatctgggaggcagaggttgctgtgagctgagatcgcgccactacactccagccagggcgacagagcataaataactccctttcaaaaaaCCAAACAA
s panTro4.chr19              59903121 234 +  63644993 aagttaggagtttgagaccagcctggccaacatggtaaaaccccatctctactaaaaaatacaaaaattagccaggcaagatggcatttgcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaatccaggaggcagaggttgctgtgagctgagatcacgccactacactccagccagggcgacagagcataaataactccctttcaaaaaaCCAAACAA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56832115 234 +  60714840 aagttaggagtttgagaccagcctggccaacatggtaaaaccccatctctactaaaaaatagaaaaattagctaggcaagatggcattcgcctgtaatcccagccactcaggaggctgaggcgggagaatctcttgaatccaggaggcagaggttgctgcgagctgagatcgcgccactacactccagccagagtgacacagcataaataactccctttcaaaaaaccaaacaa
i ponAbe2.chr19             M 186 C 0
s rheMac3.chr19              60643260 229 +  64156825 aagttaggagtttgagaccaggctggccaacatggtgaaaacccgtctctact-aaaaatacaaaaattagccaggcaagagggcacgcgtctgtaatcccagctactcgggaggctgagacaggagaattgcttgaatccaggaggcagaggttgctgtgagctgagattatgccactacactccagcctgggtgacacagc----ataattccctttcaaaaaaccaaacaa
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784144 229 +  59248254 aagttaggagtttgagaccaggctggccaacatggtgaaaacccgtctctact-aaaaatacaaaaattagccaggcaagatggcacgcatctgtaatcccagctactcgggaggctgagacaggagaattgcttgaatccaggaggcggaggttgctgtgagctgagattatgccactacactccagcctgggtgacacagc----ataattccctttcaaaaaaccaaacaa
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47596134 229 +  50890351 aagttaggagtttaagaccaggctggccaacatggtgaaaacccgtctctact-aaaaatacaaaacttagccaggcaagatggcacgcgcctgtaatcccagctactcgggaggctgagacaggagaattgcttgaatccaggaggcggaggttgctgtgagctgagattatgccactacactccagcctgggtgacacagc----ataattccctttcaaaaaaccaaacaa
i chlSab2.chr6              C 0 C 0
e canFam3.chr1               20051760 2524 - 122678785 I
e nomLeu3.chr10             103345321 3096 - 106955855 M
e papAnu2.chr19              47888274 563 +  51301725 I

a score=202859.000000
s hg38.chr19_GL949751v2_alt    907854 150 +   1002683 TGAAACATAGGTTAGCGGAGTCTGCATCCAACATTAGAGTCAGATTGACTAAG--Ttctgtatttccagctgattcctgggcgatgttggtgccactggtct---gaccaccctttgacaactgctgctccagataattcaagtcggggtataac
s panTro4.chr19              59903355 150 +  63644993 TGAAACATAGGTTAGCGGAGTCTGCATCCAACATTAGAGTCAGATTGACTAAG--Ttctgtatttccagctgattcctgggcgatgttggtgccgctggtct---gaccaccctttgacaactgctgTTCCAGATAATTCAAGTCGGGGTATAAC
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56832349 148 +  60714840 tgaaaCA-----TAGCGGACTCTGCATCCAACATTAGAGTAAGATTGACTAAG--TTCTTTatttccagctgattcctgggcgatgttgatgccgctggtctggggaccaccctttgacaactactgCTCCAGATAATTCAAGTCGGGGTATAAC
i ponAbe2.chr19             C 0 I 557
s rheMac3.chr19              60643489 155 +  64156825 tgaaacataggttagtggactctgcatccaacatttgagtcaggttgactgaggctcatgtatttccagctgattcctggacaatgctgatgccactggtctggggaccatcctttgacaatcactgCTCCAGATAATTCAATTCGGGGTGTAAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784373 155 +  59248254 tgaaacataggttagtggactctgcatccaacatttgagtcaggttgactgaggctcatgtatttccagctgattcctggacaatgctgatgccactggtctggggaccatcctttgacaatcactgCTCCAGATAATTCAAGTCGGGGTGTAAC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47596363 155 +  50890351 tgaaaCATAGGTTAGTGGACTCTGCATCCAACATTTGAGTCAGGTTGActgaggttcatgtatttccagctgattcctggacaatgctgatgccactggtctggggaccatcctttgacaatcactgCTCCGGATAATTCAAGTCGGGGTGCAAC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20054284 138 - 122678785 TAAAACAGAAATCAGTGgattctgcatctggagttt------------ctgaggatt-tgtgtttctaactgcttgccagatgatgctgatgcagctggtccagggatcacactttg----ccactgCTCTATGTAATTTATTCTAGGACATGAC
i canFam3.chr1              I 2524 C 0
e nomLeu3.chr10             103345321 3096 - 106955855 M
e papAnu2.chr19              47888274 563 +  51301725 I

a score=49156.000000
s hg38.chr19_GL949751v2_alt    908004 56 +   1002683 acaac------cagtgagatgtaaacc-aaagacgattccacg-gttagattctcaagaatgaC
s panTro4.chr19              59903505 56 +  63644993 ACAAC------CAGTGAGATGTAAACC-AAAGACGATTCCGCG-GTTAGATTCTCAAGAATGAC
i panTro4.chr19             C 0 C 0
s rheMac3.chr19              60643644 56 +  64156825 ATAAC------CAGTGAGATATAAATC-AAAGATGATTCCGTG-ATTAGATTCTCAAGAATAAC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784528 56 +  59248254 ATAAC------CAGTGAGATATAAATC-AAAGATGATTCCGTG-GTTAGATTCTCAAGAATAAC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47596518 56 +  50890351 ATAAC------CAGTGAGCTATAAATC-AAAGATCATTCCGTG-GTTAGATTCTCAAGAATAAC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20054422 64 - 122678785 ATAATGTGGTAAAATGAGGGGTAAACCTGGAGACTGTATCAAGCGTTTGGTTATCAAGAATGAT
i canFam3.chr1              C 0 C 0
e ponAbe2.chr19              56832497 557 +  60714840 I
e nomLeu3.chr10             103345321 3096 - 106955855 M
e papAnu2.chr19              47888274 563 +  51301725 I

a score=8313.000000
s hg38.chr19_GL949751v2_alt    908060 7 +   1002683 TTGTTCT
s panTro4.chr19              59903561 7 +  63644993 TTGTTCT
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56833054 7 +  60714840 TTGTTCT
i ponAbe2.chr19             I 557 C 0
s rheMac3.chr19              60643700 7 +  64156825 GTATTCC
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784584 7 +  59248254 GTATTCC
i macFas5.chr19             C 0 C 0
s chlSab2.chr6               47596574 7 +  50890351 GTATTCC
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20054486 7 - 122678785 GTGTTCT
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             103345321 3096 - 106955855 M
e papAnu2.chr19              47888274 563 +  51301725 I

a score=211631.000000
s hg38.chr19_GL949751v2_alt    908067 162 +   1002683 ---------gccgggcgcggtggctca-cgcctgtcatcccagcactctgggaggccgaggtgggcagatcacctgagattgggagtttgagaccagcctgaccaacatggagaga--cccccacctctactgaaaatacaaaattagctgggcatgttggtgcatggtgcatg
s panTro4.chr19              59903568 157 +  63644993 ---------gccgggcgcggtggctca-cgcctgtcatcccagcactttgggaggccgaggtgggcagatcacctgaggttgggagtttgagaccagcctgaccaacatggagagacccccccacctctactgaaaatacaaaattagctgggcatg-----gc--ggtgcatg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19              56833061 154 +  60714840 ---------gccgggcgcagtggctcg-cgcctgtcatcccagcactttgggaggccgaggtgggcagatcacctgaggttgggagtttgagaccagcctgaccaacatggagaga---ccccacctctactgaaaatacaaaaatagctgggcatg-----gt--ggtgcatg
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19              60643707 154 +  64156825 ---------gctgggcacgctggctta-cgcctgtaatcccagcacgttgggagaccaaggcaggtggatcgcctgaggtcaggaggtcgagaccagcctgaccaacgtggagaaa---ccccgtctctactaaaaatacaaaatcagccaggcgtg-----gt--ggtgcatg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19              55784591 154 +  59248254 ---------gctgggcacgctggctta-cgcctgtaatcccagcacgttgggagaccaaggcaggtggatcgcctgaggtcaggaggtcgagaccagcctgaccaacgtggagaaa---ccccgtctctactaaaaatacaaaatcagccaggcgtg-----gt--ggtgcatg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19               3467929 142 -  51301725 ---------gccaggtgtggtggctca-cacctgtaatcccagcactttgagaggccgaggtgggtggattacctgaggtcgggagttcaagaccagcatggtcaacatggtgaaa---tcccatctctactaaaaatacaaaa------------a-----tt--ggcgtgtg
i papAnu2.chr19             I 48039 C 0
s chlSab2.chr6               47596581 154 +  50890351 ---------gctgggcacgctggctaa-cgcctgtaatcccagcacgatgggagaccaaggcaggtggatcgcctgaggtcaggagtttgagaccagcctgaccaacgtggagaaa---ccccgtctctactaaaaatacaaaatcagccgggcgtg-----gt--ggtgcatg
i chlSab2.chr6              C 0 C 0
s canFam3.chr1               20054493 106 - 122678785 gggatccctgggtggcgcagtggtttagcgcctgc----------ctttg---gcccagggcg---cgat--cctggagacctgggatcgaatcc-----------catgttgggc---tcccggtgc----------------------------------at--ggagcctg
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10             103345321 3096 - 106955855 M

a score=11228.000000
s hg38.chr19_GL949751v2_alt   908229 4 +   1002683 cctg
s panTro4.chr19             59903725 4 +  63644993 cctg
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56833215 4 +  60714840 cctg
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10              3654594 4 + 106955855 cctg
i nomLeu3.chr10             I 3527 C 0
s rheMac3.chr19             60643861 4 +  64156825 cctg
i rheMac3.chr19             C 0 C 0
s macFas5.chr19             55784745 4 +  59248254 cctg
i macFas5.chr19             C 0 C 0
s papAnu2.chr19              3468071 4 -  51301725 cctg
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6              47596735 4 +  50890351 cctg
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              20054599 4 - 122678785 cttc
i canFam3.chr1              C 0 I 84

a score=166148.000000
s hg38.chr19_GL949751v2_alt   908233 83 +   1002683 cagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgctgtgagccgagat--------tgcgcc-----------a
s panTro4.chr19             59903729 83 +  63644993 cagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgctgtgagccaagat--------tgcgcc-----------a
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56833219 83 +  60714840 cagtcccagctactcgggaggctgaggcaggaatatcagttgaacccaggaggcagaggttgctgtgagccgagat--------cgcgcc-----------a
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10              3654598 94 + 106955855 tcatcccagctacttgggaggctgaggcagaagaatggcttgaacccgggaggcggaggctgcagtgaggtgagat--------cacacctttgcactccag
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19             60643865 91 +  64156825 caatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggtggcggaggttgctatgagctgagactgccattgcattcc-----------a
i rheMac3.chr19             C 0 I 1
s macFas5.chr19             55784749 91 +  59248254 caatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggtggcggaggttgctgtgagctgagactgccattgcattcc-----------a
i macFas5.chr19             C 0 I 1
s papAnu2.chr19              3468075 83 -  51301725 taatcccagctgcttgggaggctgaggcaggagaattgcttgaacccgggaggtggaggctgcagtgaggtgagat--------cacgcc-----------a
i papAnu2.chr19             C 0 I 6558
s chlSab2.chr6              47596739 83 +  50890351 caatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggtggcggaggttgctgtgagccgagac--------tgtgcc-----------a
i chlSab2.chr6              C 0 I 11
e canFam3.chr1              20054603 84 - 122678785 I

a score=55278.000000
s hg38.chr19_GL949751v2_alt   908316 37 +   1002683 cctgggcaacaagagtgagactcagtctc----------aaaaa----aaa
s panTro4.chr19             59903812 31 +  63644993 cctgggcaacaagagtgag----agtctc------------aca----aaa
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56833302 47 +  60714840 cctgggcaacaagagtgagactcagtctcaaaaaaaaaaaaaaa----aaa
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10              3654692 42 + 106955855 actgggcaac-agagtgaaactctgtctc----aaaaaaaaaaa----aaa
i nomLeu3.chr10             C 0 C 0
s rheMac3.chr19             60643957 42 +  64156825 cctgggcaacaagagtgagactccgtctc---------aaaaaaaaacaaa
i rheMac3.chr19             I 1 C 0
s macFas5.chr19             55784841 38 +  59248254 cctgggcaacaagagtgagactccgtctc---------aaaaaa----aaa
i macFas5.chr19             I 1 C 0
s papAnu2.chr19             47888837 38 +  51301725 cctgggcaacaagactgagactccgtctc---------aaaaaa----aca
i papAnu2.chr19             I 563 C 0
s chlSab2.chr6              47596833 35 +  50890351 cctgggcaacaagactgagactccgtcac---------aaaaaa-------
i chlSab2.chr6              I 11 C 0
e canFam3.chr1              20054603 84 - 122678785 I

a score=49099.000000
s hg38.chr19_GL949751v2_alt   908353 30 +   1002683 aaaaaaaaTG------------ACGTGGTCCT------------ATTTCTCCCA
s panTro4.chr19             59903843 30 +  63644993 aaaaaaaaTG------------ACGTGGTCCT------------ATTTCTCCCA
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56833349 30 +  60714840 aaaaaaaaTG------------ACTTGGTCCT------------ATTTCTCCCA
i ponAbe2.chr19             C 0 C 0
s nomLeu3.chr10              3654734 54 + 106955855 aaaaaaaaGGCTGATAGGGTGTACTCTGTCCTCCCAGAAGAATGACTTTTCCCA
i nomLeu3.chr10             C 0 I 1131
s rheMac3.chr19             60643999 30 +  64156825 aaaacaaaaa------------aCTTGTTCCC------------ATTTCTCCCA
i rheMac3.chr19             C 0 C 0
s macFas5.chr19             55784879 30 +  59248254 aaaaaaaaaa------------aCTTGTTCCC------------ATTTCTCCCA
i macFas5.chr19             C 0 C 0
s papAnu2.chr19             47888875 30 +  51301725 caacaaaaaa------------acttgtTCCC------------ATTTCTCCCA
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6              47596868 23 +  50890351 -------aaa------------aCTTGTTCCC------------ATTTCTCCCA
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              20054687 30 - 122678785 AAAAAAAATA------------ATGTGTTCCC------------ATTCTTCTGG
i canFam3.chr1              I 84 C 0

a score=401368.000000
s hg38.chr19_GL949751v2_alt   908383 168 +   1002683 CAGGTTGGTGTCTTGTTCCGCTACCACTCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGTCAACCAGTCCCTGACGTGCGTAAACCTCTCCGACAATGAGCTTCTGGATGAGGGTGCTAAGTTGCTGTACACAACTTTGAGACACCCCAAGTGCTTTCTGCAGAG
s panTro4.chr19             59903873 168 +  63644993 CAGGTTGGTGTCTTGTTCCGCTACCACTCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGTCAACCAGTCCCTGACGTGCGTAAACCTCTCCGACAATGAGCTTCTGGATGAGGGTGCTAAGTTGCTGTACACAACTTTGAGACACCCCAAGTGCTTTCTGCAGAG
i panTro4.chr19             C 0 C 0
s ponAbe2.chr19             56833379 168 +  60714840 CAGGTTGGTGTCTTGTTCCACTACCACTCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGTCAACCAGTCCCTGACGTGCGTAAACCTCTCCGACAATGAGCTTCTGGATGAGGGTGCTAAGTTGCTGTACACAACTTTGAGACACCCCAAGTGCCTTCTGCAGAG
i ponAbe2.chr19             C 0 C 0
s rheMac3.chr19             60644029 168 +  64156825 CAGGCTGGTGTCTTGTTCTGCTACCACCCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGCCAACCGGTCCCTGATGTGCGTAAACCTCTCCGACAGTGAGCTCCTGGATGAGGGTGCCAAGTTGCTGTACACAACTTTGAGGCACCCAAAGTGCTTCCTGCAGAG
i rheMac3.chr19             C 0 C 0
s macFas5.chr19             55784909 168 +  59248254 CAGGCTGGTGTCTTGTTCTGCTACCACCCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGCCAACCGGTCCCTGATGTGCGTAAACCTCTCCGACAATGAGCTCCTGGATGAGGGTGCCAAGTTGCTGTACACAACTTTGAGGCACCCAAAGTGCTTCCTGCAGAG
i macFas5.chr19             C 0 C 0
s papAnu2.chr19             47888905 168 +  51301725 CAGGCTGGTGTCTTGTTCTGCTACCACTCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGCCAACCGGTCCCTGATGTGCGTAAACCTCTCCGACAATGAGCTCCTGGATGAGGGTGCCAAGTTGCTGTACACAACTTTGAGACACCCAAAGTGCTTCCTGCAGAG
i papAnu2.chr19             C 0 C 0
s chlSab2.chr6              47596891 168 +  50890351 CAGGCTGGTGTCTTGTTCTGCTACCACTCAGCAGTGGGCTGATCTCTCCTTGGCCCTTGAAGCCAACCGGTCCCTGATGTGCGTAAACCTCTCCGACAATGAGCTCCTGGATGAGGGTGCCAAGTTGCTGTACACAACTTTGAGGCACCCAAAGTGCTTCCTGCAGAG
i chlSab2.chr6              C 0 C 0
s canFam3.chr1              20054717 168 - 122678785 CAGGTTGGTATCTTGTTCTGCCACCACTCAGCAATGGGCCCATCTCTCCTCCTCCCTCAAAATCAACCAGTCCCTGACATGCCTGAACCTCACAGCCAATGAGCTCCCAGATGAGAGTGCCAAGTTGCTGTGCACAACTCTGAGACACCCAAAATGCTTCCTGCAGAG
i canFam3.chr1              C 0 C 0
e nomLeu3.chr10              3654788 1131 + 106955855 I

a score=1199461.000000
s hg38.chr19_GL949751v2_alt       908551 486 +   1002683 GTTGTCGTAAGTCTCTCC-TCTCTTAC--AGAGCAGCTGTGCTTTCG-ATCTGGGGCCACA----GACGAGCAAT-GGTCATGCCTGACTTGGCTG---------TATGGAACCTCTCGCTGATGTGAACACCTG-TTCCCATGTTTAGATCCAGGCCGATGGCCTGTGAATTTTGTTCTTCTCTCATTCCTATTCCTTCATAGGATCACCAGTGCATGATAGAAGGTGGGGAGTT--------------------------------CACAAGAAGGGGCTTTTGGATG------CTGGCACTTGTGGAGCTAGCCGGGAAGGTTGAA-GTTGGACCTGTC--AACCGTGTTGCCATT--TGTGATTCTTTTG--------TAGGTTGGAAAACTGTCACCTTACAGAAGCCAATTGCAAGGACCTTGCTGCTGTGTTGGTTGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAACCCCATTGGGAATACAGGGGTGAAGTTTCTGTGTGAGGGCTTGAGGTACCCCGAGTGTAAACTGCAGACCTTGGT
s panTro4.chr19                 59904041 485 +  63644993 GCTGTCGTAAGTCTCTCC-TCTCTTCC--AGAGCAGCTGTGCTTTCG-ATCTGGGGCCACA----GACGAGCAAT-GGTCATGCCTGACTTGGCTG---------TATGGAACCTCTCGCTGATGTGAACACCTG--TCCCATGTTTAGATCCAGGCCGATGGCCTGTGAATTTTATTCTTCTCTCATTCCTATTCCTTCATAGGATCACCAGTGCATGATAGAAGGTGGGGAGTT--------------------------------CACAAGAAGGGGCTTTTGGATG------CTGGCACTTGTGGAGCTAGCCGGGAAGGTTGAA-GTTGGAAATGTC--AACCGTGTTGCCATT--TGTGATTCTTTTG--------TAGGTTGGAAAACTGTCACCTTACAGAAGCCAATTGCAAGGACCTTGCTGCTGTCTTGGTTGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAACCCCATTGGGAATACAGGGGTGAAGTTTCTGTGTGAGGGCTTGAGGTACCCCGAGTGTAAACTGCAGACCTTGGT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56833547 486 +  60714840 GTTGTCGTAAGTCTCTCG-TCTCTTCC--AGAGCAGCTGTGCTTTCG-ATCTGGGGCCACA----GACGAGCAGT-GGTCATGCCTGACTTGGCTG---------TATGGAACCTCTCGCTGATGTGAACACCTG-TTCCCATGTTTAGATCCAGGCCGATGGCCTGTGAATCTTGTTCTTCTCTCTTTCCTATTCCTTCATAGGATCACCAGTGCATGATAGAGGGTGGGGGGTT--------------------------------CACAAGAAGGGGCTTTTGGATG------CTGGCACTTGTGGAGCTAGCCGGGAAGGTTGAA-GTTGGAAATGTC--AACCGTGTTGCCATT--TGTGATTCTTCTG--------CAGGTTGGAAAACTGTCACCTTACAGAAGCCAATTGCAAGGACCTTGCTGCTGTCTTGGTTGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAACCCCATTGGGGATACAGGGGTGGAGTTGCTGTGTGAGGGCTTGAGGTACCCCGAGTGTAAACTGCAGACCTTGGT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                 60644197 482 +  64156825 GTTGTCGTAAGTCCCTCCTTTTCTTCC--AGAGCAGCTGTGGTTTCG-GTCTGGGGCCATA----GACGGGGCGT-GGTCACGCCTGACTTGGCTG---------TTTGCAACCTCTCGCTGATGTGAACAGCTG-CTCCCATGTTTAGATCCAGGCCGATGGCTTGTGAATCTTG---TTCTCTCCTTCCTGTTCCTTCATAGGATCACCAGCGTGTGACAGAGGGTGGGGCGTT--------------------------------CACAAGAAGGGGCTTTCGGATG------CTGGCATT--TGGAGATAGCCGAGAAGGTTGAA-GTTGGAAATGTC--AACCATGTTGCCATT--TGTGATTCTTTTG--------CAGGTTGGAAAACTGTCACCTGACAGAAGCCAATTGCAAGGACCTTGCTGCTGTTTTGGTGGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAACTCCCTCAAGGATACAGGGGTGAAGTTTCTTTGTGAGGGCCTGAGCTACCCCGAGTGTAAACTGCAGGCCTTGGT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55785077 482 +  59248254 GTTGTCGTAAGTCTCTCCTTTTCTTCC--AGAGCAGCTGTGGTTTCG-GTCGGGGGCCATA----GACGGGGCGT-GGTCACGCCTGACTTGGCTG---------TTTGCAACCTCTCGCTGATGTGAACACCTG-CTCCCATGTTTAGATCCAGGCCGATGGCTTGTGAATCTTG---TTCTCTCCTTCCTGTTCCTTCATAGGATCACCAGCGTGTGACAGAGGGTGGGGCGTT--------------------------------CACAAGAAGGGGCTTTCGGATG------CTGGCATT--TGGAGATAGCCGAGAAGGTTGAA-GTTGGAAATGTC--AACCATGTTGCCATT--TGTGATTCTTTTG--------CAGGTTGGAAAACTGTCACCTGACAGAAGCCAATTGCAAGGACCTTGCTGCTGTTTTGGTGGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAACTCCCTCAAGGATACAGGGGTGAAGTTTCTGTGTGAGGGCCTGAGCTACCCCGAGTGTAAACTGCAGGCCTTGGT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47889073 482 +  51301725 GTTGTCGTaagtctctccttttcttcc--agaGCAGCTGTGGTTTCG-ATCTGGGGCCATA----GACGGGGCGT-GGTCACGCCTGACTTGGCTG---------TTTGGAACCTCTCGCTGATGTGAACACCTG-CTCCCATGTTTAGATCCAGGCCGATGGCTTGTGAATCTTG---TTCTCTCATGCCTGTTCCTTCATAGGATCACCAGCGTGTGACAGAGGGTGGGGCGTT--------------------------------CACAAGAAGGGGCTTTCGGATG------CTGGCATT--TGGAGATAGCCGAGAAGGTTGAA-GTTGGAAATGTC--AACCGTGTTGCCATT--TGTGATTCTTTTG--------CAGGTTGGAAAACTGTCACCTGACAGAAGCCAATTGCAAGGACCTTGCTGCTGTTTTGGTGGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAACTCCCTCAAGGATACAGGGGTGAAGTTTCTGTGTGAGGGCCTGAGCTACCCCGAGTGTAAACTGCAGGCCTTGGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47597059 482 +  50890351 GTTGTCGTAAGTCTCTCCTTTTCTTCC--AGAGCAGCTGTGGTTTCG-ATCTGGGGCCATA----GACAGGGAGT-GGTCACGCCTGACTTGGCTG---------TTTGGAACCTCTCGCTGATGTGAACACCTG-TTCCCATGTTTAGATCCAGGCCGATGGCTTGTGAATCTTG---TTCTCTCATGCCTGTTCCTTCATAGGATCACCAGCGTGTGACAGAGGGTGGGGCGTT--------------------------------CACAAGAAGGGGCTTTCGGATG------CCGGCATT--TGGAGATAGCCGAGAGGGTTGAA-GTTGGAAATGTC--CACCGTGTTGCCATT--TGTGATTCTTTTG--------CAGGTTGGAAAACTGTCACCTGACAGAAGCCAATTGCAAGGACCTTGCTGCTGTTTTGGTGGTCAGCCGGGAGCTGACACACCTGTGCTTGGCCAAGAATTCCCTCAAGGATACAGGGGTGAAGTTTCTGTGTGAGGGCCTGAGCTACCCCGAGTGTAAACTGCAGGCCTTGGT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random        0 489 +    138250 GTTGTCGTAAGTGTCT---TCTCTT-C--AGAGCAGCTGTGGTTTCC-GTCTGGGGCGGTA----GATGAGAAAC-GGTCATGGCTGGCTTGGCTG---------TGTGGAGCCCCTCGCTGATAGGAACCCCTG-TTCCCATGTTGAGATCTGGACAGATGGCTTCTCAGTCTTGTTCTTCTCTCGTTCCTCCTCCTTCAGATGATCACCAGGGTGTGAGAGAGGGTGGGGAGTT--------------------------------CACGAGAA-GGGCTTTGGGATG------CTAGCGTT--TGGAGATGGCCGAGAAGGCTGAA-ATTGGAAATGTC-TCACCATGTTGCCATT--TGTGATTCTTTTGTTCTAACACAGGTTGGAAAACTGTCACCTTACAGAAGCTGATTGCAAGGACCTGGCTGCCGTTTTGGTTGTCAGCCGGGAGCTGATGCACCTGTGCTTGGCCGAAAACCCCCTCGGGGATACAGGGGTGAAGTTTCTGTGTGAGGGCTTGAGTTACCCCGAGTGTAAACTACAGACCCTGGT
i calJac3.chr22_GL285922_random N 0 I 8
s canFam3.chr1                  20054885 543 - 122678785 ACTGTCGTAAGTACTGCC-TCTCTCCCTGGGAGCATCTCTTTTCCTATGTTTGGGGCCACATAGGGAAGAGCAGTGGGTAAAATCTGGATTTGCTGGACTACCCATATGGGACCTCCTACTGATGTGGACACCTGGTTCCCATTTCTGGTCCCAGGTATGTGGCTCATGCATCTTATCATTCCCTCATCCTTCCTTCATGATTGAGTGTTAAGCACATGATGAGAgctatagagctatagatgctatagatgagctatagatgTTAAGCACAAGATGAGCCAT--AGATGGGGCCTCTGGCCTT--TAGGGACAGCCAAGAAAATTGGGTTTTGGAAATGTTCTCACCCTCTTACCATTTGTGTGGTGCTTTGG--------CAGGTTGGAAAACTGTCAACTTACAGAAGCCTGTTGCAAAGAGCTCTCTTCAGCTTTGATTGTCAACCAGAGGCTGACGCACCTGAGTTTGGCAAAGAACACTCTGGGAGATGATGGGGTAAAGCTTCTGTGTGAAGGCTTGAGTTACCCTGACTGTCAACTACAGATGCTGGT
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                  3654788 1131 + 106955855 I

a score=146230.000000
s hg38.chr19_GL949751v2_alt       909037  86 +   1002683 GTAAGTCCGTGCTGGCTGC----------------------------------------------------C--TGTGTGCGTGGGTGTATATGCACACGCCCCCCAC-------------CTCCGGGTTTGAGTAGGGTGGTTATGAGAACA
s panTro4.chr19                 59904526  86 +  63644993 GTAAGTCCGTGCTGGCTGC----------------------------------------------------C--TGTTTGCGTGGGTGTATATGCACACACCCCCCAC-------------CTCCGGGTTTGAGTAGGGTTGTTATGAGAACA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834033  86 +  60714840 GTAAGTCCGTGCTGGCTGC----------------------------------------------------C--TGTGTGCGTGGGTGTATATGCACACACCCCCCAC-------------CTCCGGGTTTGAGTAGGGTGGTTATGAGAACA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                  3655919  77 + 106955855 GTAAGTCCCtgttgggggt----------------------------------------------------g--tgtgtgtgtgtgtgtatgtgtgtgCAC----------------------GTGAATTCAAGCAGGAGAGAGATGAAAGTA
i nomLeu3.chr10                 I 1131 C 0
s rheMac3.chr19                 60644679 125 +  64156825 GTAAGTCTGCACTGGCtgc------------gtgtgtgtgtgtgtgtgtgtgtgtgtacatagctggctgcc--tgtgtgtgtgtgtgtatgtACATA-GCCCCCCAC-------------CTCTGGGTTCTAGTAGGGTGGTTATGAGAACA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55785559 139 +  59248254 GTAAGTCTGCACTGGCTGCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACATAGCTGGCTGCCtgtgtgtgtgtgtgtgtatgtACATA-GCCCCCCAC-------------CTCTGGGTTCTGGTAGGGTGGTTATGAGAACA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47889555  83 +  51301725 GTAAGTCTGTGCTGGctgc----------------------------------------------------c----tgagtgtgtgtgtgtgtacata-gtcCCCCAC-------------CTCCAGGTTCTAGTAGGGTGGTTATGAGAACA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47597541  83 +  50890351 GTAAGTCCGTGCTGGCTGC----------------------------------------------------C----TGTGTGTGTGTGTATGTACATA-GCTCCCCAC-------------CTCCGGGTTCTAGTAGGGTGGTTATGAGAACA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      497  96 +    138250 CCAAGTCCCTGCTGACTGC----------------------------------------------------C--TGTGTGCGTGGATGTATATGCATA---CCCCCATGCGCACACACACACGCTGGGTTCGAGTACGGTGTTTATAAGAATA
i calJac3.chr22_GL285922_random I 8 I 317
s canFam3.chr1                  20055428  64 - 122678785 GTAAGTCCATGCTAGTTAT----------------------------------------------------T----------TGTGTGCATGTGCATA-------------------------CTGGATTCAAGTAGCACAGATGCAAGCA--
i canFam3.chr1                  C 0 C 0

a score=38330.000000
s hg38.chr19_GL949751v2_alt       909123 16 +   1002683 C---TTAAT---TCCTCTAAAA
s panTro4.chr19                 59904612 16 +  63644993 C---TTAAT---TCCTCTAAAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834119 16 +  60714840 C---TTAAT---TCCTCTAAAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                  3655996 19 + 106955855 CTTGTTAAT---TCATTTCAAA
i nomLeu3.chr10                 C 0 n 0
s rheMac3.chr19                 60644804 16 +  64156825 C---TTAAT---TCCTCTAAAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55785698 16 +  59248254 C---TTAAT---TCCTCTAAAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47889638 16 +  51301725 C---TTAAT---TCCTCTAAAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47597624 16 +  50890351 C---TTAAT---TCCTCTACAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      910 16 +    138250 C---TTAAT---TTCTCTCAAT
i calJac3.chr22_GL285922_random I 317 C 0
s canFam3.chr1                  20055492 19 - 122678785 ---TTTAATAGCTTCTCTGAAT
i canFam3.chr1                  C 0 C 0

a score=67997.000000
s hg38.chr19_GL949751v2_alt       909139 31 +   1002683 GTTCCAAGCATGATGCTAATG---ACAACTGGTA
s panTro4.chr19                 59904628 31 +  63644993 GTTCCAAGCATGATGCTAATG---ACAACTGGTA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834135 31 +  60714840 GCCCCAAGCATGATGCTAATG---ACAACTGGTA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                 60644820 34 +  64156825 GCCCCAAGCATGATGCTAATGGTTACAACTGGTG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55785714 34 +  59248254 GCCCCAAGCATGATGCTAATGGTTACAACTGGTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47889654 34 +  51301725 GCCCCAAGCATGATGCTAATGGTTACAACTGGTG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47597640 31 +  50890351 GCCCCAAGCATGATGCTAATGGTtagtagta---
i chlSab2.chr6                  C 0 I 17
s calJac3.chr22_GL285922_random      926 34 +    138250 GCTCCAAGCATGATGCTAATGTTTATAACTGGTG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                  20055511 30 - 122678785 ACCCCAAGTATGATACTGAC----AGATCTGATG
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                  3656015  0 + 106955855 I

a score=58567.000000
s hg38.chr19_GL949751v2_alt       909170 28 +   1002683 AGACCTGGGTAGATGATGGTAGGAAAAA
s panTro4.chr19                 59904659 28 +  63644993 AGACCTGGGGAGATGATGGTAGGAAAAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834166 28 +  60714840 AGACCTGGGGCGATGATGATAGGAAAAA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                 60644854 28 +  64156825 AGATCTGGGGAGATGGTGATAGGAAAAA
i rheMac3.chr19                 C 0 I 19
s macFas5.chr19                 55785748 28 +  59248254 AGATCTGGGGAGATGGTGATAGGAAAAA
i macFas5.chr19                 C 0 I 37
s papAnu2.chr19                 47889688 28 +  51301725 AGATCTGGGGAGATGGTGATAGGaaaaa
i papAnu2.chr19                 C 0 I 7
s calJac3.chr22_GL285922_random      960 28 +    138250 AGACCTGGGGAGACGATGATAGGAAAAA
i calJac3.chr22_GL285922_random C 0 I 6
s canFam3.chr1                  20055541 28 - 122678785 AGACCTGGCAAGAGGATGTTAAAAAAAA
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                  3656015  0 + 106955855 I
e chlSab2.chr6                  47597671 17 +  50890351 I

a score=112972.000000
s hg38.chr19_GL949751v2_alt       909198 72 +   1002683 agtataagtagtagtaga-gt-----------------------------agtagtaataTTCTATAGGGATTTGGGGAATGTAGCTGGTTTTCGGG---------TTTTT
s panTro4.chr19                 59904687 65 +  63644993 AGTATAAGTAGT-----A-GT-----------------------------AGTAGTAAT-TTCTATAGGGATTTGGACAATGTAGCTAGTTTTCAGG----------GTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834194 76 +  60714840 AGTATAAGTAGT-----A-GT-----------------------------AGCAGTAATATTCTATAGGGATTTGGAGAATGTAGCTGGTTTTCAGGGTTCtttttttttt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                 60644901 70 +  64156825 agtagtagtagt-----a-gt-----------------------------agtagtaataTTCTATAGGGATTTGGAGAATGTAGCTGGTTTTCAGG------GTTTTTTT
i rheMac3.chr19                 I 19 C 0
s macFas5.chr19                 55785813 70 +  59248254 agtagtagtagt-----a-gt-----------------------------agtagtaATATTCTATAGGGATTTGGAGAATGTAGCTGGTTTTCAGG------GGTTTTTT
i macFas5.chr19                 I 37 C 0
s papAnu2.chr19                 47889723 70 +  51301725 agtagtagtagt-----a-gt-----------------------------agtagtaatatcCTATAGGGATTTGGAGAACGTAGCTGGTtttcagg------ggtttttt
i papAnu2.chr19                 I 7 C 0
s chlSab2.chr6                  47597688 48 +  50890351 agtagtagtagt-----a-gt-----------------------------agtagtaATATTCTATAGGGATTT----------------------G------GTTTTTTT
i chlSab2.chr6                  I 17 C 0
s calJac3.chr22_GL285922_random      994 87 +    138250 AGAAGTAGTAGT-----A-GTATAAAAAAAGAAGAAAATGAAAATAAAAAAGTAGTAATATTCTGTAGGGATTTGGAGGATGTAGCTG--------G----------tttt
i calJac3.chr22_GL285922_random I 6 C 0
s canFam3.chr1                  20055569 66 - 122678785 --AAAAAGCAAG-----ACAT-----------------------------AGTGTCAATATTCCATAGGAATTTGGGGGATGTAGCTGATTTCCAGG------GTTTT---
i canFam3.chr1                  C 0 I 1311
e nomLeu3.chr10                  3656015  0 + 106955855 I

a score=441966.000000
s hg38.chr19_GL949751v2_alt       909270 234 +   1002683 TTTTTCC----------------------------------------TCTTTATGTATGTATGTAttttagagatgggatctcgccgtgttgcctaggctggtctcaaactcctgagctcaagagatctgcctgccttggcctcccaaagtgctagaattacaggcatgagccatgtcaccccatgctG-TGTTTTCTCTTAATCTGTGTTCTTAGAACTATAAC--TGTAACATAAATTGCATGCAA-TTGGTTGTAAATGGAATTCATTTACTTAT--------
s panTro4.chr19                 59904752 234 +  63644993 TTTTTCC----------------------------------------TCTTTATGTAtgtatgtattttagagatggggtctcaccatgttgcctaggctggtctcaaactcctgagctcaagagatctgcctgccttggtctcccaaagtgctagaattacaggcatgagccaTGTCACCCCATGCTG-TGTTTTCTCTTAATCTGTGTTCTTAGAACTATAAC--TGTAACATAAATTGCATGCAA-TTGGTTGTAAATGGAATTCATTTACTTAT--------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834270 199 +  60714840 tttttcc----------------------------------------tctttatgtatgtatgtattttagagatggggtctcgccatattgcctaggctggtctcaaactcctgagctcaagagatctgcctgccttggcctcccaaaatgctagaattacaggcatgagccaTGTCACTCCATGCTG-TGTTTTCTCTTAATCTGTGTTCTTAGAACTATAAC--TGTAACATAAATTGC--------------------------------------------
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                 60644971 272 +  64156825 TTTTTCCATTTGGAGAATGTAGCTGGTTTTCAG--GGGGTTTTTTTTTTCCTCTTTATGCATGTAttttagagatggggtctcgctatgttgcccaggctggtcttaaactcccgagcgcaagaggtctgcctgccttggcctcctaaagtgctaggattacaggcatgagccatctcgcccCACGCTG-TGTTTTCTCTTAATCTGTGTTCTTAGACCTATCATTGTGTAACATAAATTGCATGCAA-TTGGTTGTAAATGGAATTCATTTATTT----------
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55785883 234 +  59248254 TTTTTTC----------------------------------------CTCCTCTTTATGCATGTAttttagagatggggtctcgctatgttgcccaggctggtctcaaactcccgagcgcaagaggtctgcctgccttggcctcccaaagtgctaggattacaggcatgagccatctcgcccCACGCTG-TGTTTTCTCTTAATCTGTGTTCTTAGACCTATCATTGTGTAACATAAATTGCATGCAA-TTGGTTGTAAATGGAATTCATTTATTT----------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47889793 235 +  51301725 ttttttt----------------------------------------ctcctctttatgcatgttttttagagatggggtctcgctctgttgcctaggctggtctcaaactcccgagcgcaagaggtctgcctgccttggcctcccaaagtgctaggattacaggcgtgagccatctcgCCCCATGCTG-TGTTTTCTCTTAATCTGTGTTCTTAGACCTCTAATTGTGTAACATAAATTGCATGCAGTTTGGTTGTAAatggaattcatttattt----------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47597736 271 +  50890351 TTTTTTCCTCCTCTTTATGCATGTATTTTAGAGATGGGGTCTCG---CTCCTCTTTATGCATGTAttttagaggtggggtctcgctctgttgtctaggctggtttcaaactcctgagcgcaagagatctgcctgccttggcctcccaaagtgctaggattacaggcatgagccatctcgcccCACGCTG-TGTTTTCTCTTAATCTGTGTTCTTAGACCTATAGTTGTGTAACATAAATTGCATGCAA-TTGGTTGTAAATGGAATTCATTTATTT----------
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     1081 243 +    138250 ctttttc----------------------------------------tctttttttatgtatatattttagacgtggggtcttaccatgttgcctaggctggtctcaaactcctgagctcaagccatctgcccatcttggcctcccaaaatgctgggattacaggcctgagccatcgcacccCACCTTGTTTTTTTCTCTTAATCTGTGTTCTTAGAACTATAGCTGTATAACGCAAATCACAGGTAA-TTGGTTGTAGATGGAAGCTATTTTCTT--TCTCttat
i calJac3.chr22_GL285922_random C 0 I 314
e canFam3.chr1                  20055635 1311 - 122678785 I
e nomLeu3.chr10                  3656015   0 + 106955855 I

a score=71079.000000
s hg38.chr19_GL949751v2_alt       909504 45 +   1002683 TTTTTAATGAATGATTTGCAAATCAGGTAGTCTTCTGGGCCAGTG
s panTro4.chr19                 59904986 45 +  63644993 TTTTTaatgaatgatttgcaaatcaggtagtcttctgggccagtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                 56834469 24 +  60714840 ---------------------ATCAGGTAGTCTTCTGGGCCAGTG
i ponAbe2.chr19                 C 0 I 3879
s rheMac3.chr19                 60645243 36 +  64156825 ---------aatgatttgcaaatcaggtagtcttctgggccatcg
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55786117 36 +  59248254 ---------aatgatttgcaaatcaggtagtcttctgggccatcg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47890028 36 +  51301725 ---------aatgatttgcAAATCAGGTAGTCTTCTGGGCCATCG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47598007 36 +  50890351 ---------aatgatttgcaaatcaggtagtcttctgggccatcg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     1638 45 +    138250 TTTTTaatgaacgatttgcaaatcacgcagcctcctgagccagtg
i calJac3.chr22_GL285922_random I 314 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e nomLeu3.chr10                  3656015  0 + 106955855 I

a score=230024.000000
s hg38.chr19_GL949751v2_alt       909549 134 +   1002683 TACGCTCAGACTCCCAATGGAAGCTATTGGAAGCTACATGCTCAATGTGATCCTCCTTTTAATACTAAAATCACAGGACACGTggcctggcatagtggctcacgcctataatcccatcaccttgggaggccgaa
s panTro4.chr19                 59905031 134 +  63644993 tacgctcagactccCAATGGAAGCTATTGGAAGCTACATGCTCAATGTGATCCTCCTGTTAATACTAAAATCACAGGACACGTggcctggcacagtggctcacgcctataatcccagcactttgggaggccaaa
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                 60645279 134 +  64156825 taggctcagactccCGACGGAAGCTATTGGAAGCTACATGCTCAATATGATCTTCCTGTCAATACTAAAATCACAGGACAGGTggcctggcacagtggctcacgcctgtaatcccagcactttgggaggctgaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                 55786153 134 +  59248254 taggctcagaCTCCCGACGGAAGCTATTGGAAGCTACATGCTCAATATGATCTTCCTGTCAATACTAAAATCACAGGACAGGTggcctggcacagtggctcacgcctgtaatcccagcactttgggaggctgaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                 47890064 134 +  51301725 TAGGCTCAGACTCCCAGTGGAAGCTATTGGAAGCTACATGCTCAATATGATCTTCCTGTTAATACTTAAATCACAGGACAggtggcctggcacagtggctcacgcctgtaatcccagcaccttgggaggccgag
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47598043 134 +  50890351 taggctcagaCTCCCAATGGAAGCTATTGGAAGCTACATGCTCAATATGATCTTCCTGTTAATACTAAAATCACAGGACAGGTggcctggcacagtggctcacacctgtaatcccagcaccttgggaggccgag
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     1683 132 +    138250 taggct--GACTCTCTGGGGAAGCTATTGGAAGCTACACGCTCAATATAATCCTCCCGTTAATACTAAAATCATAGGATGGGTAgccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015   0 + 106955855 I

a score=-1300.000000
s hg38.chr19_GL949751v2_alt       909683 3 +   1002683 gc-a
s panTro4.chr19                 59905165 2 +  63644993 gc--
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                 60645413 3 +  64156825 gca-
i rheMac3.chr19                 C 0 I 639
s papAnu2.chr19                 47890198 2 +  51301725 gc--
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47598177 2 +  50890351 gc--
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     1815 2 +    138250 gc--
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015 0 + 106955855 I
e macFas5.chr19                 55786287 0 +  59248254 C

a score=119109.000000
s hg38.chr19_GL949751v2_alt       909686 154 +   1002683 aggcagatcccttgagggcaggagttcaagaccagcctgcccaacatggtgaaacattgtctctctactaaaaatacaaaaattagtcacgcatggtgggacatgcctgtaatcccagttactcaggaggctaaggcaggagaatcacttgaac
s panTro4.chr19                 59905167 154 +  63644993 aggcagatcccttgagggcaggagttcgagaccagcctgcccaacatggtgaaacattgtttctctactaaaaatacaaaaattagtcaggcatggtgggacatgcctgtaatcccagttactgagaaggctaaggcaggagaatcacttgaac
i panTro4.chr19                 C 0 I 891
s papAnu2.chr19                 47890200 154 +  51301725 aggaagatcccttgaggccaggagttcaagaccagcctggccaatatggtgaaacatcgtctctctactaaaaatacaaaaattagctggggatggtgggatatgcctgtaatcccagttactcaggaggctaaggcaggagaatcacttgaac
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47598179 154 +  50890351 aggaagatcccttgaggccaggagttcaagaccagcctggccaatatggtgaaacatcgtctctctactaaaaatacgaaaattagctggggatggtgggacatgcctgtaatcccagttactcaggaggctaaggcaggagaatcacttgaac
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     1817 152 +    138250 gggcagatcccttaagggcagaagttcaagaccagcctggccaacacagtgaaacccca--tctctactaaaaattaaaaaattagccaggcggggtgatatatgtctgtaatcccagttactcagaaagctgagtcaggagaatcacttgaac
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015   0 + 106955855 I
e macFas5.chr19                 55786287   0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I

a score=109358.000000
s hg38.chr19_GL949751v2_alt       909840 266 +   1002683 ttcggaggtggaggttgcagtgagctgagatggcaccactgaagtccagtctggccaatagagca--agactctctc-aaaaaaaaaaaaTTATAGGACAAATCTTTAGAAAGGAATTGGggcctggcatggtggctcatgcctgtaatctcagcactttaggaggc------gggcagaacacctgaggtcaggagtttgagaccagcctggctgatgcagtgaaaccctgtctctactaaaaatacaaaaattagctaggcgtggtggtatgg
s papAnu2.chr19                 47890354 270 +  51301725 ctgggaggtggaggttgcagtgagctgagattgcaccacttctgtacagtctgggcaatagaacaagacacTCTCTC----CAAGAAAAATTATAGGACACGTCTTTAGAAAGGAATTGAGttctggcgcggtggctcacgcctgtagtctcagcactttgggaggccgaggtgggcagatcacctgaggtcaggagcttgagaccagcccgaccaacgtggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgt-gtggtgTGG
i papAnu2.chr19                 C 0 M 377
s chlSab2.chr6                  47598333 265 +  50890351 ctgggaggtggaggttgcagtgagctgagattgtaccacttctctacagtctgggcaataga-----acactctctc----caagaaaaaTTACAGGACACATCTTTAGAAAGGAATTGAGTTCTggcacggtggctcatgcctgtagtctcagcactttgggaggccggggtgggcagatcacctgaggtcaggagcttgagaccaacccggccaacgtggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgt-gtggtgtgg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     1969 273 +    138250 tcggaaggcagacgttgcagtgagctgagactgcaccactgcagtccagtctgggaaatagagta--agactgtttaaaaaaaaaaaaaaTTACGGGACGAATCTTTAGAAAGGAATTAGggctgggcactgtggctcacgcctgtaatctcagcactttcagaggccaaggcgggcaggtcacctgaggtcaggagtttgagaccagcctggccaatattgtgaaaccccgtctctactgaaaatacaaaaattagctgggcatggtggtgcgt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015   0 + 106955855 I
e macFas5.chr19                 55786287   0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I
e panTro4.chr19                 59905321 891 +  63644993 I

a score=31368.000000
s hg38.chr19_GL949751v2_alt       910106 166 +   1002683 tcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaagtcgggagg------ttgcagtgagccgagatcgtgccagcctgggtgacagaacgagattgtctcaaaa----------aaaaaaaaaaaTTGTATCTGCACTGATGGTTTCTGTTCAGAGATTCGATTTTA
s chlSab2.chr6                  47598598 180 +  50890351 tcctgtaatcccagctacttgggaggctgaagcaggagaatcacttgaagccaggaggcagagcttgcagggagccaagatcgtgccagcctgggcaacagaacgagattgtctcaaaaaataaaaaataaaaaataaaaTTG--TCTGCACTGATGGTTTCCGTTCAGAGATTCGATTTTG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     2242 166 +    138250 gcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggagc-agaggttacagtgagccgagatggc----acctgggtgacagaacaagactgtctcaaaaaacaaaaca-aaacaaaaaaaCTGTGTCTGCACTGATGGTTTCTGTTCAGAGA----------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015   0 + 106955855 I
e papAnu2.chr19                 47890624 377 +  51301725 M
e macFas5.chr19                 55786287   0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I
e panTro4.chr19                 59905321 891 +  63644993 I

a score=23234.000000
s hg38.chr19_GL949751v2_alt       910272 87 +   1002683 TGTTAACATCTCTGGTAttttttttttt----tttttttaag-atg--------gagttttactc---ttgcccacgctgg----caatggcatgatctaggctcac
s papAnu2.chr19                 47891002 98 +  51301725 TGTTAACatctctggtattttttttttttttctttttttaagtatg--------gagtcttgctc-tgttgcccaggctggagtacaatggcgtgatcttggctcat
i papAnu2.chr19                 M 377 C 0
s chlSab2.chr6                  47598778 91 +  50890351 TGTAAACATCTCTGGTAttttttttt------cttttttaag-atg--------gagtctagctc-tgttgcccaggctggagtgcaatggcgtgatcttggctcct
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     2408 84 +    138250 ------------------Ctttttttct----cttttttgag-acggagcttcagagtttcgctcttgttgcccagcctggagtgcagaggcacaatctcggctgag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015  0 + 106955855 I
e macFas5.chr19                 55786287  0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I
e panTro4.chr19                 59905321 891 +  63644993 I

a score=11630.000000
s hg38.chr19_GL949751v2_alt       910359 27 +   1002683 tgcaacctccggct-tcaaggaggttga
s panTro4.chr19                 59906212 27 +  63644993 tgcaacctccggct-tcaaggaggttga
i panTro4.chr19                 I 891 C 0
s papAnu2.chr19                 47891100 22 +  51301725 tgcaacttccggct-tcaag-----cga
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47598869 22 +  50890351 tgcaacttccggct-tcaag-----cga
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     2492 28 +    138250 cacaacctctgcctctctgggaggtgga
i calJac3.chr22_GL285922_random C 0 I 59
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e nomLeu3.chr10                  3656015  0 + 106955855 I
e macFas5.chr19                 55786287  0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I

a score=216936.000000
s hg38.chr19_GL949751v2_alt       910386 483 +   1002683 ttctcctgcctcagcctcctgagtagctgggattacaggcactcaccaccacgccgggctaatttttatatttttagtagagatgggatttcaccatgttggccaggttggtctcgaact---gacctcatgatccgcccgcctcagccttccaaagtgctaggatttacaggcatgagccactgcgtccagccAT--ACATATCTCTGGTATTCTTTGTCTCTAACATCACCTCCAACAGTTAGGAACTGTCCTCTTCCTATGAAGTAAC--TAATCTAGGATATGTACCTGGCATCTGAAAACTACCCACTTAAATTTAATGACATATTCAGTTCATGGCTGGAGACGATGAGTAGAAGGAAAGGATTCTTCCCACACCCACTATATCTAGGCCCTGAAACATTAAAAAAGAAGTCCCACAAGCAGTGAGATGTCACCGACTCACTAACTGTATCTTCAAATGAATGTCTAGTTTTTTTGGTtgtgtg
s panTro4.chr19                 59906239 485 +  63644993 ttctcctgcctcagcctcccgagtagctgggattacaggcactcaccaccacgccgggctaatttttgtgtttttagtagaaactggatttcaccatgttggccaggctggtctcgaactcctgacctcatgatccgcccgcctcagccttccaaagtgctgggatt-acaggcatgagccactgcgcccagccAT--ACATATCTCTGGTATTCTTTGTCTCTAACATCACCTCCAACAGTTAGGAACTGTCCTCTTCCTATGAAGTAAC--TAATCTAGGATATGTACCTGGCATCTGAAAACTACCCACTTAAATTTAATGACATATTCAGTTCATGGCTGGAGACGATGAGTAGAAGGAAAGGATTCTTCCCACACCCACTATATCTAGGCCCTGAAACACTAAAAAAGAAGTCCCACAAGCAGTGAGATGTCACCCACTCACTAACTGTATCTTCAAATGAATGTCTAGTTTTTTTGGTTGTGTG
i panTro4.chr19                 C 0 C 0
s papAnu2.chr19                 47891122 462 +  51301725 ttctcctgcctcagcctcctgagtagctgggactacaggcgc---ccaccacgtctggataatttttgtatttttagtagagatggg-tttcaccacgttggccaggctggtctcgaactcttgacctcgtgatctgcccacctcagtcttccaaagtgctgggatt-acaggaatgagccaccgcgcctggcc----atacaTCTCTGGTATTCTTTGTTTCTAACATCACCTCCAACAGTTGGGAACTGTCATCTTCCTATAAAGTAGCTTTAATCTAGGATATGCACCTGGCATCTGAAAACTA-CCAC-----TTTAATGACATACTCAGTTCGTGGCTGGA---GATGGGTAGAAG----GGATTCTTCCTACACCCACTATATTTAGGCCCTGAAACACTAAAACCGAAGTCCCACAGGCAGTGAGATGTCACTCACTTGC------CATCTTCAAATTAATGTCTAGTTTTCTTGGttttgtg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                  47598891 470 +  50890351 ttctcctgcctcagcctcctgagtagctgggactacaggcacccaccaccacatctggctaatttttgtatttttagtagagatggg-tttcaccacgttggccaggctggtctcgaactcttgacctcatgatctgcccacctcagtcttccaaagtgctggaatt-acaggcatgagccaccgcacctggccATGTATACATCTCTGGTATTCTTTGTCTCTAACATCACCTCCAACAGTTGGGAACTGTCATCTTCCTATAAAGTAGCTTTAATGTAGGGTATGCACCTGGCATCTGAAAACTACCCAC-----TTTAATGACATACTGAGTTCGTGGCTGGA---GATGGGTAGAAG----GGATTCTTCCTACACCCACTATATTTAGGCCCTGAAACACTAAAACCGAAGTCCCACAGGCAGTGAGATGTCACTCACTTGC------TATCTTCAAATTAATGTCTAGTTTTCTTGGTTTTGTG
i chlSab2.chr6                  C 0 I 349
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e calJac3.chr22_GL285922_random     2520  59 +    138250 I
e nomLeu3.chr10                  3656015   0 + 106955855 I
e macFas5.chr19                 55786287   0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I

a score=6355.000000
s hg38.chr19_GL949751v2_alt       910869 82 +   1002683 tgtgtgtggtgtgtggtgtgtgtgGTATTTTTTTGGGGGGGGGGGGGTTTTCttttttttttttttttggtttttttttttt
s panTro4.chr19                 59906724 73 +  63644993 TG------GTGTGTGGTGTGTGTGGTATTTTTTTGGGGGGGGGG---TTTTCtttttttttttttttggttttttttttttt
i panTro4.chr19                 C 0 I 2
s papAnu2.chr19                 47891584 48 +  51301725 ---------tatgc-atgtgtgtggt-tttttttgt-----------ttttgttttgtttttttttttga------------
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e calJac3.chr22_GL285922_random     2520 59 +    138250 I
e nomLeu3.chr10                  3656015  0 + 106955855 I
e chlSab2.chr6                  47599361 349 +  50890351 I
e macFas5.chr19                 55786287  0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt       910951 1 +   1002683 g
s panTro4.chr19                 59906799 1 +  63644993 g
i panTro4.chr19                 I 2 C 0
s papAnu2.chr19                 47891632 1 +  51301725 g
i papAnu2.chr19                 C 0 I 305
s chlSab2.chr6                  47599710 1 +  50890351 g
i chlSab2.chr6                  I 349 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e calJac3.chr22_GL285922_random     2520 59 +    138250 I
e nomLeu3.chr10                  3656015 0 + 106955855 I
e macFas5.chr19                 55786287 0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I

a score=119847.000000
s hg38.chr19_GL949751v2_alt       910952 239 +   1002683 atagtcttgctctgtcgcccaggctggaatgcagtggctccatctcagctcactgcaacctccacctcctgagttcaggtgtgattctcctgcctcagcctcccagggattaaggtgcatgccaccacgcccagctaacttctttatttttagtagagacgagttttcaccatgttggtcaagctggtctcgaattcctgacctcaggtgatccacccacctcagcctcccaaagtgct
s panTro4.chr19                 59906800 237 +  63644993 atagtcttgctctgtcacccaggctggaatgcagtggctccatctcagctcactgcaacctccacctcctgagttcaggcg--attctcctgcctcagcctcccaggaattaaggtgcatgccaccacgcccagctaacttctgtatttttaggagagacgagttttcaccatgttggtcaagctggtctcgaattcctgacctcaggtgatccacccacctcagcctcccaaagtgct
i panTro4.chr19                 C 0 C 0
s papAnu2.chr19                 47891938 237 +  51301725 aTAGTCTTGCTcagtcgtccaggctagagtgcagtggtgccatctcagctcactgcaacctccgcctcctgagttcaagcg--attctcctgcctcagcctcccagggattaaggtgcacaccaccacgcctagctaacttctgtgtttttagtagagacgaagtttcaccacgttggtcaggctggtctcgaactgctgacctcaggtgatccgcccacctcagcctcccacagtgct
i papAnu2.chr19                 I 305 C 0
s chlSab2.chr6                  47599711 237 +  50890351 atagtcttactcagtcatccaggctggagtgcagtggtgccatctcagctcactgcaacctccgcctcctgagttcaagcg--attctcctgcctcagcctcccagggattaaggtgcacgccaccacacccagctaacttctgtgtttttagtagagacgaagtttcaccacattggtcaggctggtctcgaactgctgacctcaggtgatccgcccacctcagcctcccacagtgct
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                  20055635 1311 - 122678785 I
e ponAbe2.chr19                 56834493 3879 +  60714840 I
e calJac3.chr22_GL285922_random     2520  59 +    138250 I
e nomLeu3.chr10                  3656015   0 + 106955855 I
e macFas5.chr19                 55786287   0 +  59248254 C
e rheMac3.chr19                 60645416 639 +  64156825 I

a score=136297.000000
s hg38.chr19_GL949751v2_alt        911191 164 +   1002683 gggattacaggtgtgagccaccgtgccggccCCCTCAATTCAACTTTTTGATCCATGCCCCTATTTTGCTAAGTTGTCAACTTCCCTTTAGTCTTATGTGGGTTTTCCTCCATT--ACAGTCATGGAAGTTTCTAGAAGGCCGGGTAGGGT-----------------------ctttgagaggccgag
s panTro4.chr19                  59907037 164 +  63644993 gggattacaggtgtgagccaccgtgccggccCCCTCAATTCAACTTTTTGATCCATGCCCCTATTTTGCTAAGTTGTCAACTTCCCTTTAGTCTTATGTGGGTTTTCCTCCATT--ACAGTCATGGAAGTTTCTAGAAGGCCGGGTAGGGT-----------------------ctttgagaggccgag
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103348417 166 - 106955855 GGGATTACAGGTGTGAGCCACCGTGCCAGCCCCCTCAATTCAACTTTTTGATCCATGCCCCTATTTTGCTAAGTTGTCAACTTCCCTTTAGTCTTATGTGGGTTTTCCTCCATTACACAGTCAGGGAAGTTTCTAGAAGGCCAGTTATGGT-----------------------ctttgggaggccgag
i nomLeu3.chr10                 M 3096 C 0
s papAnu2.chr19                  47892175 189 +  51301725 gggattacaggcgtgagccattgtgccggTCCCCTCAATTCAACTTTTTGATCCATGCCCCTATTTTGCTAAGTTGTCAACTTCTCTTTAGTCTTATGTGGGTTTTCCTCCATCACACAGTCATGGAAGTTTCTAGAAGactaggtacggtggctcacgcctgtaatcccagcactttgggaggctgaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47599948 189 +  50890351 gggattacaggcgtgagccatcgtgcTGGTCCCCTCAATTGAACTTTTTGATCCATGCCCCTATTTTGCTAAGTTGTCAACTTCCCTTTAGTCTTATGTGGGTTTTCCTCCATCACACAGTCATGGAAGTTTCTAGAAggctaggtacggtggctcacgcctgtaatcccagcactttgggaggctgaa
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20055635 1311 - 122678785 I
e ponAbe2.chr19                  56834493 3879 +  60714840 I
e calJac3.chr22_GL285922_random      2520  59 +    138250 I
e macFas5.chr19                  55786287   0 +  59248254 C
e rheMac3.chr19                  60645416 639 +  64156825 I

a score=298201.000000
s hg38.chr19_GL949751v2_alt        911355 261 +   1002683 gcaggtggatcatgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctttactaaaaatacaaaaattagccaggcgtggtgtcgga-gcctgtaatcccagcttacttgggagggtgaggcagagaattgcttgaacctgggaggcggaagttgcagtgagctgagattgtgccactgtactccagcctgggtgtcagagcgaga--ctgtctcaaaaaaaaaaaaaaaa------------aaGTTTCTATACATTCATA
s panTro4.chr19                  59907201 259 +  63644993 gcaggtggatcatgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctttactaaaaatacaaaaattagccaggcgtggtgtcgga-gcctgtaatcccagcttacttgggagggtgaggcagagaattgcttgaacctgggaggcggaggttgcagtgagctgagattgtgccactgtactccagcctgggtgtcagagcgaga--ctgtctcaaaaaaaaaaaaaaaa--------------GTTTCTATACATTCATA
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103348583 276 - 106955855 gcaggtggatcatgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctttactaaaaatacaaaaattagccatgcatggtgtcagatgcctgtaatcccagcttacttgggagggtgaggcagagaattgcttgaacccgggaggtggaggttgcagtgagccgagattgtgccactgtactccagcctgggcgtcagagcgagactctgcctcaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAGTTTCTATACATTCATA
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55786287 252 +  59248254 gcagatggatcataaggtcaggagttcaagaccagcctggctaatac-gtgaaaccccatctttactaaaaatac-aaaattagccaggcgcggtgtcggatgtctgtaatcccagc-tacttaggagggtgaggcagagaattgcttgaacccaggaggcggaggttgcagtgagccgagactgtgctcctgtactccaacctgggcgtcagagcaaga--ctgtctca-----gaaaaaaaaa--------------GTTTCTGTACATTCACA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47892364 251 +  51301725 gcaggtggatcatgaggtcaggagttcaagaccagcctggctaatac-gtgaaatcccatctttactaaaaatac-aaaattagccaggcgtgatgtcggatgtctgtaatcccagc-tgcttgggagggtgaggcagagaattgcttgaacccaggaggcggaggttgcagtgagccaagactgtgctcCTGTACTCCAACCCGGGCGTCAGAGCGAga--ttgtctca------aagaaaaaa--------------gtttctgtACATTCACA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47600137 252 +  50890351 gcaggtggatcatgaggtcaggagttcaagaccagcctggctaatac-gtgaaaccccatctttactaaaaatac-aaaattagccaggcgtggtgtcagatgtctgtaatcccagc-tacttgggagggtgaggcagagaattgcttgaacccaggaggcggaggtcgcagtgagccaagactgtgctcctgtactccaacctgggcgtcagagcgaga--ctgtctca-----gaaaaaagaa--------------GTTTCTGTACATTCACA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20055635 1311 - 122678785 I
e ponAbe2.chr19                  56834493 3879 +  60714840 I
e calJac3.chr22_GL285922_random      2520  59 +    138250 I
e rheMac3.chr19                  60645416 639 +  64156825 I

a score=781045.000000
s hg38.chr19_GL949751v2_alt        911616 494 +   1002683 AAGTTTCAAGATTTGGGGGTGTGTTTTCACTTCTCCATCGTCATGGACTCCAATCTGCCATCTATTTCCAAGGCCCTTCCAGGTCCTGTGTCCCTCAGCTAGTGGTATGCTTCACTTGGGACCCAGAGATACATGGGCATTATAGTTCAAATTATAATTAAGT-TTAGAACTCTATTGAGACAGAAGAAAGAAAACAGAGC-TAAGGTGAAATATCTCTGATAATCTGTGTTGGTTAATATCTAGGATCCTAGTACCAGAT-ATGTTGGAGTGTGAGCTGGTGTCTTCTGCCTGTAAGACACTACCTCTCTAGCAACTGAATTTAGCAAATACAATCgtaatcccagcatgttagggaggccagggtgggcagatcatctgaggtcgggagttcaagaccagcctggccaacatggggaaaccctgtctctactaaaaatacaaaacttagctgggtgtggtggcacgcgca----------------------------------tgtgtgtacacacacac----acccccct
s panTro4.chr19                  59907460 492 +  63644993 AAGTTTCAAGATTTGGGGGTGTGTTTTCACTCCTCCATCGTCATGGACTCCAATCTGCCATCTATTTCCAAGGCCCTTCCAGGTCCTGTGTCCCTCAGCTAGTGGTATGCTTCACTTGGGACCCAGAGATACATGGGCATTATAGTTCAAATTATAATTAAGT-TTAGAACTCTATTGAGACAGAAGAAAGAAAACAGAGC-TAAGGTGAAATATCTCTGATAATCTGTGTTGGTTAATATCTGGGATCCTAGTACCAGAT-ATGTTGGAGTGTGAGCTGGTGTCTTCTGCCTGAAAGACACTACCTCTCTAGCAACTGAATTTAGCAAATACAATCgtaatcccagcacgttagggaggccagggtgggcagatcgtctgaggtcgggagttcaagaccagcctcgccaacatggggaaaccctgtctctactaaaaatacaaaacttagctgggtgtggtggcacgcgca----------------------------------tgcgtgtacacacacac------ccccct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56838372 478 +  60714840 AAGTTTCAAGATTTGGGGGTGTGTTTTCACTCCTCTGTCGTCATGGGCTCCAATCTGCCATCTATTTCCAAGGCCCTTCCAGGTCCTGTGTCCCTCAGCTAGTGGTATGCTTCACTTGGGACCCAGAGATACATGGGCATTATAGTTCAAATTATAATTAAGT-TTAGAACTCTATTGAGACAGAAGAAAGA------AGC-TAAGGTGAA--------------CTGTGTTGGTTAATATCTAGGATCCTAGTAGCAGAT-ATGTTGGAGTGTGAGCTGGTGTCTTCTGCCTGTAAGACACCACCTCTCTAGCAACTGAATTTAGGAAACAGAATCgtaatcccagcacgttagggaggccagggtgagcagatcgtctgaggtcgggagttgaagaccaacctggccaacatggggaaaccctgtctctactaaaaatacaaaacttagctgggtgtggtggcatgcgaa----------------------------------cgcgtgtacacacacacacacacacccct
i ponAbe2.chr19                 I 3879 C 0
s nomLeu3.chr10                 103348859 496 - 106955855 AAGTTTCAAGATTTAGGGGTGTGTTTTCACTCCTCCGTCATCATGGGCTCCAATCTGCCATCTATTTCCAAGGTCCTTCCAGGTCCTGTGTCCCTCAGCTAATGGTATACTTCTCTTGGGACCCAGAGATAAATGGGCATTATAGTTCAAATTATAATTAAGT-TTAGAACTCTATTGAGACAGAAGAAAGAAAACAGAGC-TGAGGTGAAATATCTCTGATAATCTGTGTTGGTTAATATCTAGGATCCTAGTACCAGAC-ATGTCAGAGTCTGAGCTGGTGTCTTCTGCCTGTAAGACACTACCTCTCTAGCAACTGAATTTAGGAAATAGAATCgtaattccagcacgttagggaggccagggtgggcagaccgtctgaggtcgggagttcaataccagcctggccaacatggggaaaccctgtctctactaaaaatacaaaacttagctgggtgtggtggcacgtgca----------------------------------cacgcatacacacacac--acacacctct
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55786539 530 +  59248254 AACCTTTAAGATTTGGGGGGATGTTTTCACTCCTCTGTCGTCATGGGCTCCAATCTGCCCTCTATTTCCATGGCCCTTCCAGGTCCTGTGTCCCTCGGCTAGTGGTATGCTTTGCTTGGGACCCAAAGATATGTGGGCATTATAGTTCGAATTATAGTTAAGGTTTAGAACTCTATTGAGACAGAAGAAAGAAAACAGAACTTAAGGTGAAATCTGTCTGATAAGCTGTGTTGGTTGGTATCTCAGATCTTACTACCAGAT-ACGTTGGAGTCTGAGCTGGCGTCTTTTGCCTGTAAGACACTACCTCTCTAGCAACTGAATTTAGGAAATAGAATtgtaatcccagcacattagggaggccaggatgggcagatcatctgaggccgggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacagaatttagccgggtgtggtggtacacacacacacacacacacacacacacacacacacacacacacacacacacacacac----acaacacg
i macFas5.chr19                 C 0 I 13
s papAnu2.chr19                  47892615 486 +  51301725 GACCTTTAAGATTTGGGGATATGTTTTCACTCCTCTGTTGTCATGGGCTCCAATCTGCCCTCTATTTCTATGGCCCTTCCAGGTCCTGTGTCCCTCAGCTAGTGGTATGCTTTGCTTGGGACCCAAAGATATGTGGGCAT--TAGTTCAAATTATAGTTAAGG-TTAGAACTC--ttgagacagaagaaagaaaacagaacttaAGGTGAAATCTGTCTGATAAGCTGTGTTGGTTGGTATCTCAGATCCTACTACCAGATAACGTTGGAGTCTGAGCTGGCGTCTTTTGCCTGTAAGACACTACCTCTCTAGCAACTGAATTTAGGAAAtagaattgtaatcccagcacattagggaggccaggatgggcagatcatctgaggccgggagttcgagaccagcctggccaacgtggtgaaaccctgtctctactaaaaatacagaacttagctgggtgtggtggtacacaca----------------------------------------cacacacacac----aaaacacg
i papAnu2.chr19                 C 0 I 13
s chlSab2.chr6                   47600389 481 +  50890351 GACCTTTAAGATTTGGGGGTATGTTTTCACTCCTCTGTCATCATGGGCTCCAATCTGCCCTCTTTTGCCATGGCCCTTCCAGGTCCTGTGTCCCTCAGCTAGTGGTATACTTTGCTTGGGACCCAAAGATATCTGGGCATTATAGTTCAAATTATAGTTAAGG-TTAGAACTCTATTGAGACAGAAGAAAGAAAACGGAACTTAAGGTGAAATCTGTCTGATAAGCTGTGTTGGTTGGTATCTCAGATCTTACTACCAGAT-ACGTTGGAGTCTGAGCTGGCAGCTTTTGCCTGTAAGACACTACCTCTCTAGCAACTGAATTTAGGAAATAGAATtgtaatcccagcacattagggaggccaggatgggcagatcatctgaggccgggagttcgagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatacagaacttagccgggtgtggtggtacacaca------------------------------------------------cac----acaacacg
i chlSab2.chr6                  C 0 I 13
e canFam3.chr1                   20055635 1311 - 122678785 I
e calJac3.chr22_GL285922_random      2520  59 +    138250 I
e rheMac3.chr19                  60645416 639 +  64156825 I

a score=276494.000000
s hg38.chr19_GL949751v2_alt        912110 120 +   1002683 gtaatcccagctactcggaaggctggggcacaagaatcgcgtgaaaccaggaggcggaggttgaagtgagccaccgtgccaGCTgagaatcctttttacttctccaacttctgttggcca
s panTro4.chr19                  59907952 120 +  63644993 gtaatcccagctactcggaaggctggggcacaagaatcgcgtgaacccaggaggtggaggttgaagtgagccACCGTGCCCGCTgagaatcctttttacttctccaacttctgttggcca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56838850 120 +  60714840 gtaatcccagctactcagaaggctgggacacaagaatcgcgtgaacccaggaggcggaggttgaagtgagccaccgtgcccactgagaatcctttttacttcttcaacttctgttggcca
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103349355 117 - 106955855 gtaatcccagctactcggaaagctggggcacaagagtcgcgtgaacccaggaggcagaggttgaagtgagccACCGTGCCCGCTgagaatcttttttactt---caactcttgttggcca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646055 120 +  64156825 gtaatcccagatattcggaaaactggggcatgagaatcgcgtgaaccggggaagcggaggttgaagtgagccaccgtgccTGCTgaggatcctttttacttctccagcttctgttggcca
i rheMac3.chr19                 I 639 C 0
s macFas5.chr19                  55787082 120 +  59248254 gtaatcccagatattcggaagactggggcatgagaatcgcgtgaacccgggaagcagaggttgaagtgagccACCGTGCCCGCTgaggatcctttttacttctccagcttctgttggcca
i macFas5.chr19                 I 13 C 0
s papAnu2.chr19                  47893114 120 +  51301725 gtaatcccagatattcggaagactggggcatgagaatcgcgtgaactcaggaagcggaggttgaagtgagccactgtgcctgctgaGGATCCTTTTTACTTCTCCAGCTTCTGttggcca
i papAnu2.chr19                 I 13 C 0
s chlSab2.chr6                   47600883 120 +  50890351 gtaatcccagatattcggaacactggggcatgagaatcgcgtgaacccgggaagcggaggttgaagtgagccACCGTGCCCGCTAAGGATCCTTTTTActtctccagcttctgttggcca
i chlSab2.chr6                  I 13 C 0
e canFam3.chr1                   20055635 1311 - 122678785 I
e calJac3.chr22_GL285922_random      2520  59 +    138250 I

a score=451126.000000
s hg38.chr19_GL949751v2_alt        912230 164 +   1002683 cctgcattccttggcttgtgg-cccttcctccaa---------cttcggcagagcatcttcaaacgttgccctggctcccttatca-cgtcacctcctgctggctttgactctca-gctccctcttatgaggatccctgtgattg-ctggacctacccaaataa----accaggatataaa
s panTro4.chr19                  59908072 164 +  63644993 cctgcattccttggcttgtgg-cccttcctccag---------cttcagcagagcatcttcaaacgttgccctggctcccttatca-cgtcacctcctgctggctttgactctca-gctccctcttatgaggatccctgtgattg-ctggacctacccaaataa----accaggatataaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56838970 164 +  60714840 cctgtattccttggcttgtgg-cccttcctccaa---------cttcagcacagcgtcttcacacgttgctctggctcccttatca-cgtcacctcctgctggcttggactctca-gctccctcttatgaggatccctgtgattg-ctggacctacccaaataa----accaggatataat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103349472 163 - 106955855 cctgcattccttggcttgtgg-cccttcctccaa---------cttcagcagagcatctg-aaacgttgctctggctcccttatca-cgtcacctcctgctggctttgacgctca-gctccctcttacgaggatccctgtgattg-ctggacctacccaaataa----accaggatataaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646175 164 +  64156825 cctgcattccttggcttgtgg-cccttcctccag---------cttcagcagagcatcttcaaacattgctctggctcccttatca-cgtcacctcctgctggctttgactgtca-gctccctcttacgaggatccctgtgattt-ctggacctacccaaataa----accaggatataaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55787202 164 +  59248254 cctgcattccttggcttgtgg-cccttcctccag---------cttcagcagagcatcttcaaacattgctctggctcccttatca-cgtcacctcctgctggctttcactgtca-gctccctcttacgaggatccctgtgattt-ctggacctacccaaataa----accaggatataaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47893234 164 +  51301725 cctgcattccttggcttgtgg-cccttCCTCCAG---------CTTCAGCAGAGCATCTTCAAACATTGCTCTGGCTCCCTTATCA-CGCCACCTCCTGCTGGCTTTGACTCTCA-GCTCCCTCTTACAAGGATCCCTGTGATTT-CTGGACCTACCCAAATAA----ACCAGGATATAAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601003 164 +  50890351 cctgcattccttggcttgtgg-cccttcctccag---------cttcagcagagcatcttcaaacattgctctggctcccttatca-catcacctcctgctggctttgactctca-gctccctcttacgaggatccctgtgattt-ctggacctacccaaataa----accaggatataaa
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20056946 181 - 122678785 cctgcatcccttggctcatggtcccttccttcatggccaaagccagcagcatagtgtcttcaaatgtccttctgtctttctcatcacctttcccccctgctggctttgactctcattctccttcttataaggatccttgtaattaccttggctcacctggataatctccccacctcctaga
i canFam3.chr1                  I 1311 C 0
e calJac3.chr22_GL285922_random      2520  59 +    138250 I

a score=216064.000000
s hg38.chr19_GL949751v2_alt        912394 77 +   1002683 ccatctt--aagatgctcagtcacctcta-----cgaggtcccttttg----------------ctcgcaggtgccaggagttgggacttggacatcttt
s panTro4.chr19                  59908236 77 +  63644993 ccatctt--aagatgctcagtcacctcta-----cgaggtcccttttg----------------ctcgcaggtgccaggagttgggacttggacatcttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839134 77 +  60714840 ccatctt--aagatgctcagtcacatcta-----cgaggtcccttttg----------------ctcgcaggtgccaggagttgggacttggacatcttt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103349635 77 - 106955855 ccatctt--aagatgctcagtcacatctt-----ctaggtcccttttg----------------ctcgcaggtgccaggagttgggacttggacatcttt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646339 81 +  64156825 gcatctt--aagaagctcagtcacatctaagatgcaaggtcccttttg----------------ctcacaggtgccagaagttgggacttggacatctt-
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55787366 81 +  59248254 gcatctt--aagaagctcagtcacatctaagatgcaaggtcccttttg----------------ctcacaggtgccagaagttgggacttggacatctt-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47893398 81 +  51301725 GCATCTT--AAGAAGCTCAGTCACATCTAAGATGCGAGGTCCCTTTTG----------------CTCACAGGTGCCAGGAGTTGGGACTTGGACATCTT-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601167 81 +  50890351 gcatctt--aagaagctcagtcacatctaagatgcaaggtcccttttg----------------ctcacaggtgccaggagttgggacttggacatctt-
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      2579 77 +    138250 ccatctcaaaagaTTCTCAGTCACTTCTA-----GGAGGTCCCTGTTG----------------CTGGCAGG-Gccagaggttaggacttggacatctt-
i calJac3.chr22_GL285922_random I 59 C 0
s canFam3.chr1                   20057127 87 - 122678785 ---tcct-----ttattcaaccacacctg-----caaagtcccctttgtatgtaacataacatattcacagggaccagggattatcacatagacatcttt
i canFam3.chr1                  C 0 I 106

a score=103333.000000
s hg38.chr19_GL949751v2_alt        912471 33 +   1002683 aggggaggccattcttctgtccaccacaCCACC
s panTro4.chr19                  59908313 33 +  63644993 aggggaggccattcttctgtccaccacaCCACC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839211 33 +  60714840 aggggaggccattcttctgtccaccacaCCACC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103349712 32 - 106955855 gggggaggccattcttctgtccaccacGCCA-C
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646420 32 +  64156825 -ggggaggccattcttctgtccaccacGCCACC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55787447 32 +  59248254 -ggggaggccattcttctgtccaccacGCCACC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47893479 32 +  51301725 -GGGGAGGCCATTCTTCTGTCCACCACGCCACC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601248 32 +  50890351 -ggggaggccattcttctgtccaccgcGCCACC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      2656 33 +    138250 gggggaggccattcttctgtccaccacaCCACC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057214 106 - 122678785 I

a score=999828.000000
s hg38.chr19_GL949751v2_alt        912504 308 +   1002683 CCATGATTCCATTTCCATGTCACCACTGTCTC-TAAGTGTGTCT--AACCCACGGCTCAAGAGTCAAA------------GGTGCATCACAGCAGTGAGAACTCACAGGTTCGGGTTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTTTGGAACTGCGACATAACTAGCGATGGCTGCTGCGATCTCACAAAGCTTCTCCAAGAAAAATCAAGCCTGTTGTGTTTGGATCTGGGGCTGAATCACATAGGAGTTAAGGGAATGAAGTTCCTGTGTGAGGCTTTGAGGAAACCACTGTGCAACTTGAGATGTCTGTGGTGAGTTA
s panTro4.chr19                  59908346 298 +  63644993 CCATGATTCCATTTCCATGTCACCACTGTCTC-TAA------------CCCACGGCTCAAGAGTCAAA------------GGTGCATCACAGCAGTGAGAACTCACAGGTTCGGGTTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTTTGGAACTGCGACATAACTAGCGATGGCTGCTGCGATCTCGCAAAGCTTCTCCAAGAAAAATCAAGCCTGTCGTGTTTGGATCTGGGGCTGAATCACATAGGAGTTAAGGGAATGAAGTTCCTGTGTGAGGCTTTGAGGAAACCACTGTGCAACTTGAGATGTCTGTGGTGAGTTA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839244 308 +  60714840 CCATGATTCCATTTCCATGTCACCACTGTCTC-TAAGTGTGTCT--AACCCACGGCTCAAGAGTCAAA------------GGTGCATCACACCAGTGAGAACTCACAGGTTCGGGTTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTTTGGAACTGCAACATAACTAGCAATGGCTGCTGCAATCTCGCAAAGCTTCTCCAAGAAAAATCAAGCCTATCGTGTTTGGATCTGGGGCTGAATTACATAGGAGTTAGCGGAATGAAGCTCCTGTGTGAGGCTTTGAGGAAACCACTGTGCAACTTGAGATGTCTGTGGTGAGTTA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103349744 309 - 106955855 CCACGATTCCATTTCCACGTCACCATTGTCTC-TAAGTGTGTCTAAAACCCACGGCTC-AGAGTCGAA------------GGTGCATCACACCACTGAGAACTCACAGGTTCGGGTTTTCTTTCTTCCTGTGGTTGATTTCTAGGCTATGGAACTGCGACATAACTAGCGATGGCTGCTGCGATCTTGCAAAGCTTCTCCAAGAAAAATCAAGCCTATCGTGTTTGGATCTGGGGCTGAATCACATAGGAGTTATCGGAGTGAAACTCCTGTGCGAGGCTTTGAGGAAACCACTGTGCAACTTGAAATGTCTGTGGTGAGTTA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646452 308 +  64156825 CCATGATTCCATTTCCAGGTCACCATTGTCTCTTAAGCGTGTCTAAAACCCATGGCTC---AGTCGAA------------GGTGCCTCACACCAGTGAGAACTCACAGGTTCAGGCTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTGTGGAACTGCGACATCACGAGCGATGGCTGCTGCAGTCTCGCAAAGCTCCTCCAAGAAAAATCAAGCCTGTCGTGTTTGGATCTTGGACTGAATCACATAGGAGTTACCGGAGTGAAGGTCCTGTGCGAGGCTTTGAGCAAACCACTGTGCAACTTGAGATGTCTGTGGTGAGTTA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55787479 310 +  59248254 CCATGATTCCATTTCCAGGTCACCATTGTCTCTTAAGCGTGTCTAAAACCCATGGCTC-AGAGTCGAA------------GGTGCCTCACACCAGTGAGAACTCACAGGTTCAGGCTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTGTGGAACTGCGACATCACGAGCGATGGCTGCTGCAGTCTCGCAAAGCTCCTCCAAGAAAAATCAAGCCTGTCGTGTTTGGATCTTGGACTGAATCACATAGGAGTTACCGGAGTGAAGGTCCTGTGCGAGGCTTTGAGCAAACCACTGTGCAACTTGAAATGTCTGTGGTGAGTTA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47893511 309 +  51301725 CCATGATTCCATTTCCAGGTCACCATTGTCTC-TAAGCGTGTCTAAAACCCACGGCTC-AGAGTCGAA------------GGTGCCTCACACCAGTGAGAACTCACAGGTTCGGGCTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTGTGGAACTGCGACATCACGAGCGATGGCTGCTGCAGTCTCGCAAAGCTCCTCCAAGAAAAATCAAGCCTGTCGTGTTTGGATCTTGGACTGAATCACATAGGAGTTACCGGAGTGAAGGTCCTATGCGAGGCTTTGAGCAAACCACTGTGCAACTTGAGATGTCTGTGGTGAGTTA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601280 309 +  50890351 CCATGATTCCATTTCCAGGTCACCATTGTCTC-TAAGCGTGTCTAAAACCCACGGCTC-AGAGTCGAA------------GGTGCCTCACACCAGTGAGAACTCACAGGTTTGGGCTTGCTTTCTTCCTGTGGTTGATTTCTAGGCTGTGGAACTGCGACATCACAAGCGATGGCTGCTGCAGTCTCGCAAAGCTCCTCCAAGAAAAATCAAGCCTGTCGTGTTTGGATCTTGGACTGAATCACATAGGAGTTACCGGAGTGAAGGTCCTGTGCGAGGCTTTGAGCAAACCACTGTGCAACTTGAGATGTCTGTGGTGAGTTA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      2689 307 +    138250 CCATGATTCCA-TTCCATGTCACCATTGCCTC-TAAGAGCGTCCGAAGCCCATGGCTC-GGAGCTGAA------------GGTGCATCACACCAGCGAGAACTAACAGGTTTGGATTTTC-TTCTTTGTGTGGGTGATTTCTAGGCTGTGGAACTGTGACATAACTAGCAAAGGCTGCTGTCACCTCGCAAAGCTTCTCCACGAAAAATCAAGCCTAACGAACTTGGATCTGGGGCGGAATGACATAGGAGTTCCCGGAGTGCAGGGCCTATGTGAGGCTTTGAAGAAACCACTGTGTAACTTGAAACGTCTGTGGTGAGTCA
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20057320 313 - 122678785 CCATGATTTCATTTCCATGTC-CCATTGTCTG-AAAGCTTGTCTAAATCCTGCAGCTT-GAGGTCAACAACATTGGTTTTGGTGTATCTCCTCAGGGAAGACTCA-------GAGTTTACTTTCTTCATGTGATTGATTTCTAGGCTTTGGTATTGCAGCATAACCAGTGGTGGCTGCAATCATCTGTCAACACTTCTCCAGCAAAATTCAAACCTTACCCACTTGGATCTGGGGCTGAATCACATAGGGATTACTGGACTGAAGTTTCTGTGTGAGGCTTTGAAGAACCCAATGTGTAACCTCAAATGCCTATGGTAAGTTA
i canFam3.chr1                  I 106 I 3553

a score=363709.000000
s hg38.chr19_GL949751v2_alt        912812 158 +   1002683 ACTTATAAGTTCAACTTCCTATACTTACACCTTACTGAATCTGTGGCTAGTGTAAAATAATCAGTGAAGCCGACTTCCCAAGTTATATAATTGAGAGGACCTTTATAGAGTCGATCGAGCATTTACTAGGATGGTTAAAGGAATAAGTtctagtctat
s panTro4.chr19                  59908644 158 +  63644993 ACTTATAAGTTCAACTTCCTATACTTACACCTTACTGAATCTGTGGCTAGTGTAAAATAATCAGTGAAGCCGACTTCCTAAGTTATATAATTGAGAGGACCTTTATAGAGTCAATCGAGCATTTACTAGGATGGTTAAAGGAATGAGTTCTAGTCTAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839552 158 +  60714840 ACTTATAAGTTCAACTTCCTATACTTATACCTTATTGAATCTGTGGCTAGTGTAAAATAATCAGTGAAGCTGACTTCCCAAGTTATATAATTGAGAGGACTTCTATAGAGTCGATCGAGCATTTACTAGGATGGTTAAAGGAATAAGTTCTAGTCTAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350053 153 - 106955855 ACTTATAAGTTCAACTTCCTATGCTTATACCTTATCGAATCTGTGGCTAAT-----AGAATCAGTGAAGCCAACCTCCCAAGTTATATAATTGACAGGACTTGGATAGAGTCAATTGAGCATTCACTAGGATGGTTAAAGGAATAAGTTCTAGTCTAT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646760 143 +  64156825 ACTTATAAGTTCAACTTCCTCTACTTAGACCTTATTGAATCTGTGGCTAACGTGAAGCAATCAGTGAAACCG--------------GTAATTGAGAGGACTCGGATAGAGTCAACCGAGCTTTCACTAAGGTAGTTAAAGGAAT-AGTTCTAGTCTAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55787789 143 +  59248254 ACTTATAAGTTCAACTTCCTCTACTTAGACCTTATTGAATCTGTGGCTAACGTGAAGCAATCAGTGAAACCG--------------GCAATTGAGAGGACTCGGATAGAGCCAACCGAGCTTTCACTAAGATAGTTAAAGGAAT-AGTTCTAGTCTAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47893820 157 +  51301725 ACTTATAAGTTCAACTTCCTCTACTTAGACCTTATTGAATCTGTGGCTAATGTAAAGCAATCAGTGAAACTGACTTCCCAAGTTATGTAATTGAGAGGACTTGGATAGAGTCAACCGagctttcactaagatagttaaAGGAAT-AGTTCTAGTCTAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601589 143 +  50890351 ACTTATAACTTCAACTTCCTCTACTTAGACCTTATCGAATCTGTGGCTAATGTAAAGCAATCAGTGAAACCG--------------GTAATTGAGAGGACTTGGATAGAGTCAACCGAGCTTTCACTGAGATAGTTAAAGGAAT-AGTTCTAGTCTAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      2996 155 +    138250 CCTCATAAGTTCAACTTACTACGTTTACACCTTATTGAATCTGTGTCTAATGTAAAACAATCGGGGAAGGAGACTCCTC-GGTGAGATAATTGAGAGGACCTGAAT--GGTCAGTCGAGCATGCACTAGGATGGCTAGAGGAGTATGTTCTAGTCTGT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I

a score=20570.000000
s hg38.chr19_GL949751v2_alt        912970 24 +   1002683 gtctaagttttt----gttttttttttt
s panTro4.chr19                  59908802 23 +  63644993 GTCTAAGttttt-----ttttttttttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839710 12 +  60714840 G----------------ttttttttatt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350206 28 - 106955855 GTCTGAGttttttgtttgttgttttttt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646903 21 +  64156825 GTCTAAGTCTC-------tttttttttt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55787932 19 +  59248254 GTCTAAGtctc---------tttttttt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47893977 24 +  51301725 GTctaagtctct----cttttttttttt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601732 24 +  50890351 GTCTAAGtcttc----tttttttttttt
i chlSab2.chr6                  C 0 I 146
e canFam3.chr1                   20057633 3553 - 122678785 I
e calJac3.chr22_GL285922_random      3151  0 +    138250 C

a score=281449.000000
s hg38.chr19_GL949751v2_alt        912994 188 +   1002683 ctt-----gaagttttgctcttgtcacataggctggagtgcagtggcgtgatcttggctcactgcaacctccgcctcccaggttcaagcaattctcttgcttcagcttcccgagtagctgggattacaggcgcccgccaccatgcccagctaa-ttcttgta-tttttagtagagacagggtttcgccatgttga
s panTro4.chr19                  59908825 188 +  63644993 ctt-----gaagttttgctcttgtcacataggctggagtgcagtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcaattctcttgcttcagcttcccgagtagctgggattacaggcacccgccaccatgcccagctaa-ttcttgta-tttttagtagagacagggtttcgccatgttga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839722 186 +  60714840 ctt-----gaagctttgctcttgt--cataggctggagtgcaatggcgtgatcttggctcactgcaacctccgcctctcaggttcaagcagttctcttgcctcagcttcccaagtagttgggattacaggcgcccgccaccatgcccagctaa-tttttgta-tttttagtagagacagggtttcgccatgttga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350234 193 - 106955855 cttgaggcgaagttttgctcttgtcacataggctggagggcaatggcgtgatcttggctcactgcaacatccgcctcccggattcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgcccagctaa-tgtttgta-tttttagtagagacagggtttcgccatgttga
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60646924 189 +  64156825 ttt-----gagacggagtctttgtcgcccaggctggagtgcagtggccggatcgcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccacctcgcccagctag-ttgttgtattttttagtagagacggggtttcaccaggttag
i rheMac3.chr19                 C 0 I 21
s macFas5.chr19                  55787951 190 +  59248254 ttt-----gagacggagtctttgtcgcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccacctcgcccggctagttttttgtattttttagtagagacggggtttcaccaggttag
i macFas5.chr19                 C 0 I 2
s papAnu2.chr19                  47894001 190 +  51301725 ttt-----gagacagagtctttgtcgcccaggctggagtgcagtggccggatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacgggcgcccgccacgttgcccagctagttttttacattttttagtagagacggggtttcaccaggttag
i papAnu2.chr19                 C 0 I 2
e canFam3.chr1                   20057633 3553 - 122678785 I
e calJac3.chr22_GL285922_random      3151   0 +    138250 C
e chlSab2.chr6                   47601756 146 +  50890351 I

a score=27932.000000
s hg38.chr19_GL949751v2_alt        913182 25 +   1002683 aggttcatctcaaactcctgacctc
s panTro4.chr19                  59909013 25 +  63644993 aggttcatctcaaactcctgacctc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839908 25 +  60714840 aggttcatctcaaattcctgacctc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350427 25 - 106955855 aggttcatctcaaactcctgacctc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55788143 25 +  59248254 aggatggtctcgatctcctgacctc
i macFas5.chr19                 I 2 C 0
s papAnu2.chr19                  47894193 25 +  51301725 aggatggtctcgatctcctgacctc
i papAnu2.chr19                 I 2 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e calJac3.chr22_GL285922_random      3151  0 +    138250 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=910.000000
s hg38.chr19_GL949751v2_alt        913207 1 +   1002683 a
s panTro4.chr19                  59909038 1 +  63644993 a
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839933 1 +  60714840 a
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350452 1 - 106955855 a
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55788168 1 +  59248254 a
i macFas5.chr19                 C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e calJac3.chr22_GL285922_random      3151 0 +    138250 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218 0 +  51301725 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=18759.000000
s hg38.chr19_GL949751v2_alt        913208 33 +   1002683 ggtgatccgcccatctcggcctcccaaagtgct
s panTro4.chr19                  59909039 33 +  63644993 ggtgatccgcccatctcggcctcccaaagtgct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56839934 33 +  60714840 ggtgatccacccatctcggcctcccaaagtgct
i ponAbe2.chr19                 C 0 I 153
s nomLeu3.chr10                 103350453 33 - 106955855 ggtgatccgcccatctcggcctcccaaagtgct
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e calJac3.chr22_GL285922_random      3151  0 +    138250 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218  0 +  51301725 C
e macFas5.chr19                  55788169  0 +  59248254 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=13704.000000
s hg38.chr19_GL949751v2_alt        913241 56 +   1002683 gggattacaggcgtgagccactgcgccaggccctatgtctaagttctagtctgtgt
s panTro4.chr19                  59909072 56 +  63644993 gggattacaggcgtgagccactgcgcccggccCCAGATGGAGGTTCTAGTCTGTGT
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103350486 56 - 106955855 gggattacaggcgtgagccactgcgcccggccCTATGTGTAAGTTCTAGTCTGTGT
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e ponAbe2.chr19                  56839967 153 +  60714840 I
e calJac3.chr22_GL285922_random      3151  0 +    138250 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218  0 +  51301725 C
e macFas5.chr19                  55788169  0 +  59248254 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=5214.000000
s hg38.chr19_GL949751v2_alt        913297 11 +   1002683 catgCAAAGAA
s panTro4.chr19                  59909128 11 +  63644993 TATGCAAAGAA
i panTro4.chr19                 C 0 M 393
s nomLeu3.chr10                 103350542 11 - 106955855 CATGCAAAGAA
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random      3151 11 +    138250 CATGCAAAGAC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e ponAbe2.chr19                  56839967 153 +  60714840 I
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218  0 +  51301725 C
e macFas5.chr19                  55788169  0 +  59248254 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=7827.000000
s hg38.chr19_GL949751v2_alt        913308 51 +   1002683 CACCTGTGAAATTTTAAGGATACAGTGCCTCAAGCCATTCAGCCAAAAGCC
s nomLeu3.chr10                 103350553 50 - 106955855 CACCTGTGAAATGTTAAGGATACAGTG-CTCAAGCCATTCAGCCCAAAGCC
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random      3162 50 +    138250 CAGCCATGGCATTTTGAGGATACAAGGCCTCAAGCCATTCAGATGAAATC-
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e ponAbe2.chr19                  56839967 153 +  60714840 I
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218  0 +  51301725 C
e macFas5.chr19                  55788169  0 +  59248254 C
e rheMac3.chr19                  60647113 21 +  64156825 I
e panTro4.chr19                  59909139 393 +  63644993 M

a score=1146.000000
s hg38.chr19_GL949751v2_alt        913359 2 +   1002683 AC
s ponAbe2.chr19                  56840120 2 +  60714840 AC
i ponAbe2.chr19                 I 153 C 0
s nomLeu3.chr10                 103350603 2 - 106955855 AC
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random      3212 2 +    138250 AC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218 0 +  51301725 C
e macFas5.chr19                  55788169 0 +  59248254 C
e rheMac3.chr19                  60647113 21 +  64156825 I
e panTro4.chr19                  59909139 393 +  63644993 M

a score=83351.000000
s hg38.chr19_GL949751v2_alt        913361 99 +   1002683 TGCCCAGCACCCCACATTCAGAGAGGTGGGAATTGggccaggcacagtggctcatacctgtaatcccagcacttcgggaggccgaagcgggcggatcac
s panTro4.chr19                  59909532 99 +  63644993 TGCCCAGCACCCCACATTCAGAGAGGTGGGAATTGggccaggcacagtggctcacacctgtaatcccagcacttcgggaggccgaagtgggcggatcac
i panTro4.chr19                 M 393 C 0
s ponAbe2.chr19                  56840122 99 +  60714840 TGCCCAGCACCCCACATTCAGAGAGGTAGGAATTAggccaggcatggtggctcacacctgtaatcccagcactttgggaggccgaagcgggcggatcac
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350605 99 - 106955855 TGCCCAGCACCCCACAGTCAGAGAGGTAGGAATTGCgcccggcacggtggctcacacctgtaatcccagcactttgggaggccgaagtgggcggatcac
i nomLeu3.chr10                 C 0 M 100
s calJac3.chr22_GL285922_random      3214 98 +    138250 TG-CCAACACCCCACATTCAGAGAGGTAGGAATTGggccgggcgcggtggctcacacctgtaatcccagcactttgagaggccgaagcaggtggatcac
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218  0 +  51301725 C
e macFas5.chr19                  55788169  0 +  59248254 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=172382.000000
s hg38.chr19_GL949751v2_alt        913460 444 +   1002683 ttaaggtcaggagctcaagaccagcctggccaacttga---aactccatctctactaaaa-tataaaaattagccgagcatagtagtgggtgcctcttttttttttttttttttttttgagat--agtttcactcttgttgcccaggctgtagtgtaatggcgcgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgccttagcctcccacatagctgcaaataaacaggcatgtgccaccatgcctggctaa--ttttgtatttttagtatagacggggtttctccatgttggtcaggctggtctcgacctccggacct----------------------------------------caggtgagagccaccgtgcccagccagtaggtgcctt------------------------------------taatcccagctacttgggaggctgaggcaggagaatcacttgaaccctggaggcagaggttgcagtgagctgagatcc
s panTro4.chr19                  59909631 447 +  63644993 ttaaggtcaggagctcaagaccagcctggccaacttgatgaaactccatctctactaaaaatataaaaattagccgagcgtagtagtgggtgcctctttttgttttttttttttttt-gagat--agtttcattcttgttgcccaggctgtagtgcaatggcgcgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgccttagcctcccacgtagctgcaaataaacaggcatgtgccaccatgcctggctaa--ttttgtatttttagtatagacggggtttctccatgttggtcaggctggtctcgacctcccgacct----------------------------------------cgggtgagagccaccgtgcccagccagtaggtgcctt------------------------------------taatcccagctacttgggaggctgaggcaggagaatcacttgaaccctggaggcagaggttgcagtgagctgagatcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56840221 438 +  60714840 ttgaggtcaggagctcaagaccagcctggccaacttggtgaaactccatctctactaaaaatataaaaattagccgagtgtagtagtggatgcctctttttttttttttttttt----gagac--agtttcacccttgttgtccagactggagtgcaatggcacgatctcagctcactg------ccacctcctgggttcaagtgattctcctgccttaacctcccaagtagctggaaataaacaggcatgtgccaccacgcctggctaa--ttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgacctcccgacct----------------------------------------caggtgagagccactgcgcccagccagtaggtgcctt------------------------------------taatcccagctacttgggaggctgaggcaggagaatcacttgaaccctggagatggaggttgcagtgacctgagatcc
i ponAbe2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random      3312 470 +    138250 ttgaggtcaggagttcaagattagcctggcagacatggtgaaaccccatctc----------------------------------------------------tttttttttt----gagacggagtttcgctcttgttacccaggctggagtgcaatggcgcgatctcggctcaccgaaacctctgcctcctgggttcaggcaattctcctgcctcagcctcccgagtagctgggatt--acaggcacgcaccaccatgcccagccaattttttatatttttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttgaccttatgatccacctgcctcggcctcccaaaatgctgcaattacaggtgtgagccaccgcgcctggccttgtgaaaccccatctctactaaaaatccaaaatttagcctggcatggtaatcccagctgctcaggaggctgaggcagcagaatcccttaaacccaggaggtggaggttgcagtgagctgagatca
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e nomLeu3.chr10                 103350704 100 - 106955855 M
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218   0 +  51301725 C
e macFas5.chr19                  55788169   0 +  59248254 C
e rheMac3.chr19                  60647113  21 +  64156825 I

a score=236145.000000
s hg38.chr19_GL949751v2_alt        913904 338 +   1002683 tgtcactacactccatcctgggctacaagagcaagactccatctcaggaaaaaataaaaaa------GAGGTAGGAATTAGATATCGTGCCAGAAAATGCTGGCTCTATCAGCAGGTGAGTGGTCTCAACTTGGCTATCTTACAAATACCTTGTGAGTTAGCTACAATCAGATGCACTTGAACCTGGAATCCTATCT-GGGAGGCAATCTTAAAAGAATTTGACTCGGGATgggcaaggtggctcatgcctgtaatcctggcattttgggagtccaaggcaggtagattgcttgaggccaagaatttaaaaacagcctggccaacacaatg-aagccctgtctcta
s panTro4.chr19                  59910078 330 +  63644993 tgtcactacactccatcctgggcgacaagagcaagactccatctcaggaaaaaataaaaaa------GAGGTAGGAATTAGA--------CAGAAAATGCTGGCTCTATCAGCAGGTGAGTGGTCTCAACTTGGCTATCTTACAAATCCCTTGTGAGTTAGCTACAATCAGATGCACTTGAACCTGGAATCCTACCT-GGGAGGCAATCTTAAAAGAATTTGACTCGGGATgggcaaggtggctcatgcctgtaatcccggcattttgggagtccaaggcaggtagattgcttgaggccaagaatttaaaaacaggctggccaacacaatg-aagccctgtctcta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56840659 338 +  60714840 tgtcactacactccatcctgggcgacaagagcaagactccatctcaggaaaaaataaagaa------GAGGTAGGAATTACACATCATGCCAGAAAATGCTGGCTCTATCAGCAGGTGAGTGGTCTCAACTTGGCTATCTTACAAATCCCTTGTGAGTTAGCTACAGTCAAATGCACTTGAACCTGGACTCCTACCT-GGGAGGCAATCTTAAAAGAATTTGACTCCGGATgggcaaggtggctcatgcctgtaatcccggcattttgggagtccaaggtaggtagattgcttgaggccaggaatttaaaaacagcctggccaacacaatg-aaaccctgtctcta
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103350804 343 - 106955855 tgtcactatactccatcctgggcgacaagagcaagactccatctcaggaaaaaaaaaaaaaaaaaAGGGGGTAGGAATTGGACATCGTGCCAGAAAATGCTGGCTCTATCAGCAGGTGAGTGGTCTCAACTTGGCTATCTTACAAATCCCTTGTGAGTTACCTACAGTCAAATGCACTCGAACCTGGAATCCTGCCCGGGGAGGGAATCTTAAAATAATTTGACTCCAgctgggcaaggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcggatcac--gaggtcaggagatcgagaccagcctggccaacgtggtg-aaaccctgtctcta
i nomLeu3.chr10                 M 100 C 0
s calJac3.chr22_GL285922_random      3782 314 +    138250 catcgttgcactccatcctgggtgacaagagcgagactccctctcagaaaaaaa-------------GACGCAGGAATTGGACCTCATGCCAGAAAAT-------------GCAGGTGAATGGTCTCAAACCAGCTGTCGTACAGATCCCATGTGAGTTAGGTACAATCTAATGCACTTGAACCTGAAATCCTCCCT-GGAAGGGAATCTT-----AATTTGATTGCAGTTgggtgaagtggctcatgcctgtaatcccagcattttgggagtctaaggcgggcagactgcttgaggccaacaatttaaaaacagcctggccagtacaatgcaaactctgtctcta
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218   0 +  51301725 C
e macFas5.chr19                  55788169   0 +  59248254 C
e rheMac3.chr19                  60647113  21 +  64156825 I

a score=201823.000000
s hg38.chr19_GL949751v2_alt        914242 468 +   1002683 ctgaaagtacaaaaatccgctgagcatggctgtgtac--ctctgctcccagttactcaggaggctgaggtgggaggatcacttgagcctgggaggaagaagttacagcgaattgagatcacgtcacctcactccagcctgggtgac--agtgagatcctgtctcaaaaaaaaaaaaaaaacaaaaaaaacaaaggcgcctttttaatcactcactgacacgtgtagaggagcaaaaagtttgagttgcTGGTTGgcccaggaggtcaaggctgcagtgagccaagatggcgttaccacactccagcctgggcaaccgagtgagaccgtgtttcaaa----aaataaaGTggcagggtgcagtggctcatgcctgtaattccagcactttgggaggccgaggcaggtggatcacctaaggtcaggagttcgtagaccagcctgtctctactaaagagaca-ggtgaaaccctgtctct
s panTro4.chr19                  59910408 457 +  63644993 ctgaaagtgcaaaaatccgctgagcgtggctgtgtac--ctctgctcccagttactcgggaggctgaggtgggaggatcacttgagcctgggaggaagaagttacagtgagctgagatcacgtcacctcactccagcctgggtgac--agtgagatcctgtctcaaaaaaaaaaaaaa-----------caaaggcgcctttttaatcactcactgacacgtgtagaggagcaaaaagtttgagttgcTGGTTGgcccaggaggtcaaggctgcagtgagccaagatggcgttaccacactccagcctgggcaaccgagtgggaccgtgtttcaaa----aaataaaGTggccgggtgcagtggctcatgcctgtaattccagcactttgggaggccgaggcaggtggatcacctaaggtcaggagttcgtagaccagcctgtctctactaaagagaca-ggtgaaaccctgtctct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56840997 446 +  60714840 ctaaaagtacaaaaatcagctgagcgtggctgtgtac--ctctgctcccagttactcgggaggctgaggtgggaggatcacttgagcctgggaggaagaagttacagtgaactgagatcacgtcacctcactccagcctgggtgac--agtgagatcctgtctcaaaaa---------------------aaaGGCGCCTTTTTAATCACTCACTGACACATGTAGAGGAGCAAAAAGTTTGAGTTGCTGGTTGgcccaggaggtcaaggctgcagtgagccaagctggtgttaccacactccagcctgggcaactgagtgagaccatgtttcaaa----aaaTTAAGTggccgggtgcagtggctcatgcctgtaattccagcactttgggaggctgaggcaggtggatcacctaaggtaaggagtttg-agaccagcctgtctctactaaagagaca-ggtgaaaccctgtctct
i ponAbe2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random      4096 432 +    138250 ctaaaagtacaaaaattagctgggcatggctgtgcacgtctgtgctctcagctactcaggaggctgaagtgggagaatcacttgagcctgggaggaagaagttacagtgaactgaga----------gcactccagcctggatgacagagtgagatcctgtctcaaaaaaaaaaaaaaaaa---------aaaGGCACCTTTTTAATCACTCACTGACACGGGCAGAGGGGCAAAAAGTTTGAGTT---------------aggtcgaggctgcagtgagccaagatggtgccaccacactccagcctgggcaacagagtgagaccttgtctcaaaagagaaaagaaGTggctgggcacggtggctaacactagtaatcccagcactttgggagactgaggcgggtggatcaactgagatcaggagttcg-agaccagcctggcc----------aacatggtgaaaccacgtctct
i calJac3.chr22_GL285922_random C 0 I 1
e canFam3.chr1                   20057633 3553 - 122678785 I
e nomLeu3.chr10                 103351147   0 - 106955855 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218   0 +  51301725 C
e macFas5.chr19                  55788169   0 +  59248254 C
e rheMac3.chr19                  60647113  21 +  64156825 I

a score=141056.000000
s hg38.chr19_GL949751v2_alt        914710 191 +   1002683 ctaaaaccacaaaaatcaggcaggcatggtggcacatagctataatctcatctacttg-------gaggcacgagaactgcttgaatccaggaggcagaggctacagtgagccgagatcatgccacagcactccagccctggcgagagagcaagact--gtctcaa---agaataaCTTCAAAGATGGaagt-------tatttaacctc
s panTro4.chr19                  59910865 191 +  63644993 ctaaaaccacaaaaatcaggcgggcatggtggcacatagctataatctcatctactcg-------gaggcacgagaactgcttgaatccgggaggcagaggttacagtgagccgagatcatgccacagcactccagccttggcgagagagcaagact--gtctcaa---agaataaCTTCAAAGATGGaagt-------tatttaacctc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56841443 189 +  60714840 ataaaaccacaaaaattaggcgggcatggtggcacatagctataatctcatctacttg-------gaggcacaagaactgcttgaatccaggaggcagaggttacagtgagccgagatcatgccacagcactccagccttggcgatagagcgagact--gtctcaa---agaataaCTTCAAAGATGGAAGT-------TATTTAAc--c
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351147 191 - 106955855 ctaaaaccacaaaaattagccgggcgtggtggcacatagctataatctcatctattgg-------gaggcacgagaactgcgtgaattcaggaggcagaggttacagtgagctgagatcatgccacagcactccagccttggcaatagagcgagact--gtctcta---agaataactttaaagacggaagt-------tatttaacctc
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random      4529 210 +    138250 ttaaaaacacaaaaattagccaggcatggtggcacatagccataatctcgtctatttgggagactgaggcacgagaattgcttgaatctgggaggccgaggttgcagtgacccaggatcaccccatagcactcaagcctcgatgacagagcgagactccatctcaaaaGagagtaacttataagatggaagttacttaatacttaaccgc
i calJac3.chr22_GL285922_random I 1 C 0
e canFam3.chr1                   20057633 3553 - 122678785 I
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218   0 +  51301725 C
e macFas5.chr19                  55788169   0 +  59248254 C
e rheMac3.chr19                  60647113  21 +  64156825 I

a score=337210.000000
s hg38.chr19_GL949751v2_alt        914901 371 +   1002683 tctgctcaaaagcctcagtgcttccctatgtcaatccaggtaaaatcctatattgacgatggcttcagggtcttctgtgagctggccactgcttacctatgacctcatct-tgacaatcctccctgtctca--ctcatgcccgctgcctggatgttctattttacgtgtcagtcacatgtatcttcagggcctctgcacaagctatttctctgcctggagaactcccccccgag----ctctatgactcggtctcttcacccc-------------ctCACCT-----CCAACCATTGTAGCCAGAA-CCCCCAGTTATTCCCTG--TACCCCTTGCCCTTCAGAACCCCT-------------CATCGCCTCCATAT-TTTCCTGTTAGCAGATGAGCCCTGAGGGCGGAGA
s panTro4.chr19                  59911056 371 +  63644993 tctgctcaaaagcctcagtgcttccctatgtcaatccaggtaaaatcctatattgacaatggcttcagggtcttctgtgagctggccaccgcttacctatgacctcatct-tgacaatcctccctgtctca--ctcatgcccgctgcctggatgttctattttacgtgtcagtcacatgtatcttcagggcctctgcacaagctatttctctgcctggagaactcccccccgag----ctctatgacttggtctcttcacccc-------------cttACCT-----CCAACCATTGTAGCCAGAA-CCCCCAGTTATTCCCTG--TACCCCTTGCCCTTCATAACCCCT-------------CATCGCCTCCATAT-TTTCCTGTTAGCAGATGAGCCCTGAGGGCGGAGA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56841632 369 +  60714840 tccgctcaaaagcctcagtgcttccctatgtcaatccaggtaaaatcctatattgacaatggcctcagggtcttctgtgagctggccaccgcttacctatgacctcatgt-tgacaatcctccctggctca--ctcatgcccgctgcctggatgttctatttcacatgtcaatcacatgtatcttcagggcctctgcacaagctatttctctgcctggagaact-ccccccGAG----CTCTATGACTCAGTCTCTTCACCCC-------------CTCACCT-----CCAACCATTGTAGCCAGAA-CCCTCAGTTATTCCCTG--TACCCCTTGCCCTTCATAACCCCT-------------CATCACCTCCATAT-TTTCCTGTTAGCAGATGAG-CCTGAGAGCAGAGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351338 370 - 106955855 tctgctcaaaagcctcagtgcttccctatgtcaatctaggtaaaatcctatattgacgacggcctcgccgtcttctgtgagctggccaccgcttacctatgacctcatct-tgacaatcctccctggctca--ctcctgcccgctgcctggatgttctattttacgtgtcaatcacatgcatcttcagggcctctgcacaagctatttctctgcctggagaact-ccccctgag----ctctatgacttggtcccttcacccc-------------ATCACCT-----CCAACCACTGTAGCTAGAA-CCCCCAGTTATTCCCTG--TACCCCTTGTCCTTCATAACCCCT-------------CATCACCtccatat-tttcctattagcagatgagccctgagggcggaga
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random      4739 349 +    138250 tctgctcaaaaccttcagctcttccctaggtcaatccaaataaaattctgtgtttacggtggcctcagggt---------------cacctcttacctgtgtcctcatct-ctacagtcctccctggctcactctcatgccggctgcctggatgttctgttctacatgtcaatcacatgcaaccccagggcctttgcacaagctctttctctgcctggagaacc----cccaaa----ctctgtgacccagtctctttaccct-------------gtcatct-----ccaacCATT-TAGCTGGAA-CTCCCAGTTACTCCCTGTATACACCTCGACCTT---AACCCCT-------------TGGACACTCCATAT-TTTCCTGTT---AGATGAGTCTTGAGGGCAGAGT
i calJac3.chr22_GL285922_random C 0 I 8
s canFam3.chr1                   20061186 401 - 122678785 tctggtcaaaatctccagtggttccccatctcgtcccaagtaaaatctgaagtttacaatggcctaagggccttttgtgaaatggctccctcttatctgtgacctcatctcttacaaccctccctggttcactctcaagctggctgtcttgatat--tgttttacatgataatcctccatgacctcaggacctttgcataagctatttctctgcctgaggaactcctactccagatctctctatggttcattctcttcacccctgaggtcttcatattgacctataggtcaactattgtagtgagcatcccccaatt----------ctccttttgcctttcatgacccttattggatatggcacaccacatatatctgtttcctattagcacatgagctcagagggaagaga
i canFam3.chr1                  I 3553 C 0
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218   0 +  51301725 C
e macFas5.chr19                  55788169   0 +  59248254 C
e rheMac3.chr19                  60647113  21 +  64156825 I

a score=1314.000000
s hg38.chr19_GL949751v2_alt        915272 1 +   1002683 C
s panTro4.chr19                  59911427 1 +  63644993 C
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842001 1 +  60714840 C
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351708 1 - 106955855 c
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                   3536801 1 -  59248254 c
i macFas5.chr19                 I 67842 C 0
s calJac3.chr22_GL285922_random      5096 1 +    138250 T
i calJac3.chr22_GL285922_random I 8 C 0
s canFam3.chr1                   20061587 1 - 122678785 c
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218 0 +  51301725 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=5407.000000
s hg38.chr19_GL949751v2_alt        915273 11 +   1002683 Gtt----------ttgtttgt
s panTro4.chr19                  59911428 11 +  63644993 Gtt----------ttgtttgt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842002 11 +  60714840 Gtt----------ttgttggt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351709 21 - 106955855 tttgttgttgttgttgttgtt
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                   3536802 11 -  59248254 gtt----------ttatgtat
i macFas5.chr19                 C 0 I 3
s calJac3.chr22_GL285922_random      5097 11 +    138250 GTT----------TTGTTTTT
i calJac3.chr22_GL285922_random C 0 I 57
e canFam3.chr1                   20061588  0 - 122678785 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e papAnu2.chr19                  47894218  0 +  51301725 C
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=129168.000000
s hg38.chr19_GL949751v2_alt        915284 93 +   1002683 ttttt--gagaccggagtctcactct-gtcacccaggctggagtgcaatggcgcgatctcggctcactgcaacctccgcctcctgggttcaagcga
s panTro4.chr19                  59911439 94 +  63644993 ttttt-tgagaccggagtctcactct-gtcacccaggctggagtgcaatggcgccatctcggctcactgcaacctccgcctcctgggttcaagcga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842013 93 +  60714840 ttttt--gagactggagtcccactct-gtcacccagactggagtgcagtggcgcgatctcggctcactgcaacctccgcctcctgggttcaagcga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351730 94 - 106955855 tttttttgagact-gagtctcactct-gtcacccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcaa
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                   3536816 92 -  59248254 tttat--gaga-tggagtttcactct-gttgcccaggctggagtgcagtggcatgatcttcactcactgcaacctctgcctcccaggctccagtga
i macFas5.chr19                 I 3 C 0
s papAnu2.chr19                   3474716 92 -  51301725 tttat--gaga-tggagtttcactct-gttgcccagcctggagtgcagtggcacgatcttcgctcactgcaatctctgcctcccaggctccagtga
i papAnu2.chr19                 I 6558 C 0
s calJac3.chr22_GL285922_random      5165 93 +    138250 ttttt--gaga-cagagtttccttccggttgcccaggctggagtgcaatgacacaatcactgctcactgcaaactccagctcccgggttcaagcga
i calJac3.chr22_GL285922_random I 57 C 0
e canFam3.chr1                   20061588  0 - 122678785 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=16475.000000
s hg38.chr19_GL949751v2_alt        915377 12 +   1002683 ttctcctgcccc
s panTro4.chr19                  59911533 12 +  63644993 ttgtcctgcccc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842106 12 +  60714840 ttctcctgcccc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351824  9 - 106955855 tt---ctgcctc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                   3536908 12 -  59248254 ttcttgtgcctc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                   3474808 12 -  51301725 ttcttgtgcctc
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random      5258 12 +    138250 ttctcctgcttc
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20061588 12 - 122678785 ttctcttgttcc
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47601756 146 +  50890351 I
e rheMac3.chr19                  60647113 21 +  64156825 I

a score=93418.000000
s hg38.chr19_GL949751v2_alt        915389 108 +   1002683 agcctcctgagtagctgggattacaggtgcctgtcaccacgcccagctaacttctgtatatttagtagagacacggttttaccatgtta----ggttggtcttgaactcctt
s panTro4.chr19                  59911545 108 +  63644993 agcctcctgagtagctgggactacaggtgcctgtcaccatgcccagctaacttttgtatatttagtagagacacggttttaccatgtta----ggttggtcttgaactcctt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842118 107 +  60714840 agcctcctgagtagctgggactacaggtgcctgtcaccatgcccggctaacttttgtatttttagtagagacagggttttaccatgtta----ggctggtcttgaactcc-t
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351833 107 - 106955855 agccttccgagtagctgggattacaggtgcccgccaccacgcccagctaacttttgtacttttagtagagacagggttttaaggtgtta----ggctggtcttgaactcc-t
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                   3536920 103 -  59248254 accttcccaagtagctggcattaaaggcactcaccaccatgtgtggctaatt--------ttttgtagagacggggtttcaccatgttggcctggctggtctcaaactcc-t
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                   3474820 103 -  51301725 accttcccaagtagctggcattaaaggcactcaccaccatgcgtggctaatt--------ttttgtagagatggggtttcaccatgttggcctggctggtctcaaactcc-t
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random      5270  42 +    138250 agcctcccaaatagctgggactgtaggcacacaccaccacgc----------------------------------------------------------------------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20061600   0 - 122678785 C
e chlSab2.chr6                   47601756 146 +  50890351 I
e rheMac3.chr19                  60647113  21 +  64156825 I

a score=10904.000000
s hg38.chr19_GL949751v2_alt        915497 8 +   1002683 gacctcag
s panTro4.chr19                  59911653 8 +  63644993 gacctcag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842225 8 +  60714840 gacctcag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351940 8 - 106955855 gacctcag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60647134 7 +  64156825 gacctca-
i rheMac3.chr19                 I 21 C 0
s macFas5.chr19                   3537023 8 -  59248254 gaactcag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                   3474923 8 -  51301725 gaactcag
i papAnu2.chr19                 C 0 n 0
e canFam3.chr1                   20061600 0 - 122678785 C
e calJac3.chr22_GL285922_random      5312 0 +    138250 C
e chlSab2.chr6                   47601756 146 +  50890351 I

a score=1314.000000
s hg38.chr19_GL949751v2_alt        915505 1 +   1002683 g
s panTro4.chr19                  59911661 1 +  63644993 g
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842233 1 +  60714840 g
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351948 1 - 106955855 a
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                   3537031 1 -  59248254 g
i macFas5.chr19                 C 0 n 0
s papAnu2.chr19                  47894218 1 +  51301725 g
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601902 1 +  50890351 g
i chlSab2.chr6                  I 146 C 0
e canFam3.chr1                   20061600 0 - 122678785 C
e calJac3.chr22_GL285922_random      5312 0 +    138250 C
e rheMac3.chr19                  60647141 0 +  64156825 C

a score=189574.000000
s hg38.chr19_GL949751v2_alt        915506 71 +   1002683 tgatccatccacctcggcctcccaaagtgctgggattacaggcgtgaaccaccgtgcccggccTGAGACTT
s panTro4.chr19                  59911662 71 +  63644993 tgatccatccacctcggcctcccaaagtgctgggattacaggcgtgaaccagcgtgccctgccTGAGACTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842234 71 +  60714840 tgatccatccacctcggcctcccaaagtgctgggattacaggcgtgaaccactgtgcccggccTGAGACTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103351949 71 - 106955855 tgatccatccaccttggcctcccaaagtgctgggattacaggcgtgagcccccgcgcccagcctgagactt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60647141 71 +  64156825 tgatccgcccacctgggcctccaaaagtgctgggattacaggcgtgagccaccgcgcccggccTGAGACTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55788169 71 +  59248254 tgatccgcccacctgggcctccaaaagtgctgggattacaggcgtgagccaccgcgcccggccTGAGACTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47894219 71 +  51301725 tgatccgcccacctgggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggcctaagactT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601903 71 +  50890351 tgatccacccgtcttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccTGAGACTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      5312 51 +    138250 ------------------ctcccaaagtgctgaga-cacaggcctgagccactgcgcccggcc-GAGACTT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20061600  0 - 122678785 C

a score=1168560.000000
s hg38.chr19_GL949751v2_alt        915577 362 +   1002683 C---TGTTGGTCATGCAGATCCCCAACACACGAGGGTGGGCTTGGCTTGCCGGAGGGCATCGATCAGCACTGGCTGCATTAACGTGTTGATTTCTGTGTTTCCCC---AGGTTGTGGGGATGTTCCATCCCTCCGTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCGTCACTCTGGACCTGGGTCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTGAAACCTTGACATGTTCCAGTGGCACCCTCCGGACACTCAGGTATGATCCATTTACTTCCCCATCAGGCTTTCTCCAGAGTGGTAGGTTT--AGGGGAAGCATAATGACATGGACCTGCTGTAGGAGA------CT
s panTro4.chr19                  59911733 362 +  63644993 C---TGTTGGTCATGCAGATCCCCAACACACGAGGGTGGGCTTGGCTTACCGGAGGGCATCGATCAGCACTGGCTGCATTAACGTGTTGATTTCTGTGTTTCCCC---AGGTTGTGGGGATGTTCCATCCCTCCGTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCGTCACTCTGGACCTGGGTCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTGAAACCTTGACATGTTCCAGTGGCACCCTCCGGACACTCAGGTATGATCCATTTACTTCCCCATCAGGCTTTCTCCAGGGTGGTAGGTTT--AGGGGAAGCATAATGACATGGACCTGCTGTAGGAGA------CT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842305 361 +  60714840 C---TGTTGGTCATGCAGATCCCCAACACCCGAGGGTGGGCTTGGCTTACAGGAGGGCATCGATCAGCACTGGCTGCATTAACATGTTGATTTCTGTGTTT-CCC---AGGTTGTGGGGATGTTCCATCCCTCTGTTCAGTTGTGAAGACCTCTGTTCTGCCCTCAGCTGCAACCAGAGCCTCGTCACTCTGGACCTGGGTCAGAATCCCTTGGGTTCTAGTGGAGTGAAGATGCTGTTTGAAACCTTGACACATCCCAATGGCACCCTCCGGACACTCAGGTATGATCCATTTACTTCCCCATCAGGCTTTCTCCAGAGTGGTAGGTTT--AGGGGAAGCATAATGACATGGACCTGCTGTAGAAGA------CT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103352020 355 - 106955855 c---tgttggtcatacagatccccaacacccgagggggggcttggcttataggagggcatcgatcagcaccggccgaattaacgTGTTGATTTCTGTGTTTCCCC---AGGTTGTGGGGATGTTCCATCCCTCCGTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCGTCACTCTGGACCTGGGTCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTGAAACCTTGACACGTCCCAATGGCACCCTTCAGACACTCAGGT-------GTTTACTTCCCCATCAGGCTTTCTCCAGAGTGGCAGGTTT--AGGGGAAGCATAATGACATGGACCTGCTGTAGGAGA------CT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60647212 359 +  64156825 G---TGTTGGTCATGCAGGTCCCCAAGCCCCGAGGCTGTGCTTGGCTTATGGGAGGGCATCGATCAGCACCAGCTGAATCAACGTGCTCATTTCTGTGTTTCCTC---AGGTTGTGGGGGTGTTCCATCCCTCCCTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCATCACTCTGGACCTGGGCCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTAAAACCTTGACACGTCC---TGGCACCCTCCAGACACTCCGGTATGATCTATTTACTTCCCCATCAGGCTTCCTCCGGGGTGGTAGGTTT--AGGGGAAACATAATGACGTGGACCTGCTGTAGGAGA------CT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55788240 359 +  59248254 G---TGTTGGTCATGCAGGTCCCCAAGCCCCGAGGCTGTGCTTGGCTTATGGGAGGGCATCGATCAGCACCAGCTGAATCAACGTGCTCATTTCTGTGTTTCCTC---AGGTTGTGGGGATGTTCCATCCCTCCCTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCATCACTCTGGACCTGGGCCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTAAAACCTTGACACGTCC---TGGCACCCTCCAGACACTCCGGTATGATCTATTTACTTCCCCATCAGGCTTCCTCCGGGGTGGTAGGTTT--AGGGGAAACATAATGACGTGGACCTGCTGTAGGAGA------CT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47894290 365 +  51301725 G---TGTTGGTCATGCAGGTCCCCAAGCCCCGAGGCTGTGCTTGGCTTATGGGAGGGCATCGATCAGCACCAGCTGAATCAACGTGCTCAGTTCTGTGTTTCCTC---AGGTTGTGGGGATGTTCCATCCCTCCCTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCATCACTCTGGACCTGGGCCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTCAAACCTTGACACGTCC---TGGCACCCTCCAGACACTCCGGTATGATCCATTTACTTCCCCGTCAGGCTTCCTCCGGGGTGGTAGGTTT--AGGGGAAACATAATGACGTGGACCTGCTGTAGGAGACTGATCCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47601974 362 +  50890351 GTGTTGTTGGTCATGCAGGTCCCCAAGCCCCGAGGCTGTGCTTGGCTTATGGGAGGGCATCGATCGGCACCAGCTGAATCAGCGTGCTCATTTCTGTGTTTCCTC---AGGCTGTGGGGATGTTCTATCCCTCCCTTCAGTTGTGAAGACCTCTGCTCTGCCCTCAGCTGCAACCAGAGCCTCATCACTCTGGACCTGGGCCAGAATCCCTTGGGGTCTAGTGGAGTGAAGATGCTGTTTAAAACCTTGACACGTCC---TGGCACCCTCCAGACACTCCGGTATGATCTATTTACTTCCCCATCAGGCTTTCTCCGGGGTGGTAGGTTT--AGGGGAAACATAATGACGTGGACCTGCTGTAGGAGA------CT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      5363 361 +    138250 C---TGTTGCTCATGCAGATCCCCAACACCCAAGGGTGCACCTGACTCACAGGAGGGTGCCGGTCAGCACTGGCTGAACAAACGTGTTGATTTCTGCCTTTCCCC---AGGTTGTGGGGATGTTCCATCCCTCCGGCCAGCTGTGAGAACCTCTGCTGTGTCCTCAGCTGCAACCAGACCCTCATCACTCTGGACCTGGGCCAGAATTCCTTGGGGTATAGTGGAGTAAAGTTGCTGTTTGAAACCTTGACACGTCCAAATGGCACCCTCCAGACACTCAGGTACGATCCACGTACTCCCCC-TCAGGTATTCTCCGGGGTAGTAGGTTT--AGGGGAAGCATAATCACAGGAATCTGCCGTAGGAGA------CT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20061600 353 - 122678785 c---tgttg--------gatacccaacacccaggcgtatgtctggcatataggatggtatcagtaaacattggttgaatga-----CCTAATTTTGTGTCTCCCCTATAGGTTGTGGGGATGTGCCATCACTCCTTTCAGCTCTGAAATCCTCTCATCTGCCCTTGGCAGAAATCAGAGCCTGGTCACACTGGACCTGGGCCAGAATTCCTTGGGGTATAGTGGAATAAAGATGCTGTGTGATACCTTGAAACTTCACTGTTCCTCCCTCCGGACACTCAGGTATGATCCTCCTGCTGTTCAGT-GTTTTTCCTCCATGATGGTAGGTTTGCAAGGGGAGCACAAACCACAGGAATTGTTGTAGGCAA------CT
i canFam3.chr1                  C 0 I 757

a score=18278.000000
s hg38.chr19_GL949751v2_alt        915939 6 +   1002683 GATCTG
s panTro4.chr19                  59912095 6 +  63644993 GATCTG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842666 6 +  60714840 GATCTG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103352375 6 - 106955855 GATCTG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60647571 6 +  64156825 GATCCG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55788599 6 +  59248254 GATCCG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47894655 6 +  51301725 GATccg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47602336 6 +  50890351 GATCCG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      5724 6 +    138250 GATCCG
i calJac3.chr22_GL285922_random C 0 I 456
e canFam3.chr1                   20061953 757 - 122678785 I

a score=1822264.000000
s hg38.chr19_GL949751v2_alt        915945 733 +   1002683 gtagctgg-attacaggttcccgccatcacacccagccaatttctgtatttcacttggagaaacggggtttcaccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagcaaccgcacccggccACC-tttttttttttttt--------cctttgaggcaagaactcactatgt-tccccaggctggagtccagcagcacaatgatggctcgctgcaggctcgctccagctcctgggctcaagcaa---tcctgcctcagttcctgagtaggtaggtttataagcatgaaccattgcacccagcCACGGCTGC-CGTCTACCTGCTCATGATAGCCATTTGTCACTGGGCTGTGTTTTGTTTGTTGCATTTTGTCAGGGTTTTGGGGTTTTGTTTTGtttt--------ttctttctttttttttttttttttctgagatggagtctcactctgttgcccaggctggggtgcagtggt-------------tgctaactgcaacctccacctcccaggttccagctattctcatgcttcagcctcccaagtagctgggattacaggcatgcaccaccacacctaggtaatttttgtatttttagtagagacagggttttgccatgttggccagggtggtctcaaactcctgacctc-cgtgatttgcccacctcagcatcccaaagtgctgggattacaggcatgag--ccaccgcaccc
s panTro4.chr19                  59912101 705 +  63644993 gtagctgg-attacaggttcccgccatcacacccagccaatttctgtatttcacttggagaaacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagcaactgcacccggccACCttttttttttttttt--------cctttgaggcaagaactcactatgt-tccccaggctggagtccagcagcacaatgatggctcgctgcaggcttgctccagctcctgggctcaagcaatcctcctgcctcagttcctgagtaggtaggtttataagcatgaaccattgcacccagcCATGGCTGC-TGTCTACCTGCTCATGACAGCCAGTTGTCACTGGGCTGT-------------------------GTTTTGGGGTTTTGttttgtttt--------ttc-------ttttttttttttttctgagatggagtctcactctgttgcccaggctggggtgcagtggt-------------tgctaactgcaacctccacctcccaggttccagctattctcatgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacctaggtaatttttgtatttttagtagagacagggttttgccatgttggccagggtggtctcaaactcctgacctc-ggtgatttgcccacctcagcatcccaaagtgctgggattacaggcatgag--ccaccgcaccc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56842672 740 +  60714840 gtagctgg-attacaggttcccgccaccagacccagccaatttctgtatttta---gtagagacggggtttcaccatgttggtcaggctggtctcaaactcctgacctcagatgatcca-ctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccACCttttttttttttttttttttttacctttgaggcaagaactcactgtat-tccccaggct-gagtccagcagtacaatgatggctcgctgcaggctcgctccagctcctgggctcaagcaatcctcctgcctcagttcctgagtaactaggtttataagcatgaaccattgcacccagccaCGGCTGC-TGTCTGCCTGCTCATGAGAGCAAGTTGTCACTGGGCTGTGTTTTGTTTGTTGCATTTTGTCAGGGTTTTTGGGGTTCGTttttttgt--------ttt--ttgttttttgttttgttttctgagatggagtctcactctgttgcccaggctggagtgcagtggt-------------tgctaactgcaacttccacctcccaggttcaagctattctcatgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacctaggtaatttttgtatttttagtagagacagggttttgccatgttggccagggtgatctcgaacttttgacctc-ggtgatttgcccacctcagcgtcccaaagtgctgggattacaggcatgagccccaccgcaccc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103352381 730 - 106955855 gtagctgg-attacaggttcccgccaccacacccagccaatttctgtatttt--tagtagagacggggtttcaccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagctaccgtacccagcc-----------Ctttatt--------tcttcgaggcaagaactcactatgt-tccccaggctggagtccagcagcacaatgatggctcgctgcaggctagctccagctcctgggctcaagcaatccttctgcctccgttcctgagta-ctaggtttataagcatgagccattgca-ccAGCCACGGCTGC-TGTGTACCTGCTCATGAGAGCCAGTTGTCACTGGGCTGCgttttgtttgttgcattttatcagggttttggggttttgttttgttttgcttttcctttttttttttttttttttttttcctgagatggagtctcactctgttgcccaggctgggttgcaatggt-------------tgctaactgcaacctccacctcccaggttcaagctattctcatgcttcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaatttttgtatttttagtagagacagggttttgccatgttggccagggtgctctcgaactcttgagctt-ggtgatttgcccacctcagcgtcccaaagtgctgggattataggcatgag--tcactgcaccc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60647577 710 +  64156825 gtagctggaattacaggttcccgccaccacacccagctaa-ttctgtatttt--tagtagagacgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggtctcccaaagtgctgggattacaggcgtgaaccgctgcacccagcc---------Ctttttttt--------ccttggaggcaagaactcactctgt-tccccaggctggagtccagcagcacagtgatggctc-----------actccagttcctgggctcaagcaatcctcctacctcagttcctgagtagccaggtttgtaagcatgaaccattgcacccagccaTGGCTGCTTGTCTACCTGCTCACGAGAGCCAGTTGTCATTGGATTGTGTTTTGTTTGTTGGGTTTTGTTGGGGTTTTGG-gttttgttttgtttt----------------------gttttgttttctgagatggagtctcgctctgttgcccaggctggggtatagtggt---gtagtatctcagctaactgcaacctccgcctcccaggttcaggctattctcatgcctcagcctcccatgtagctgggattacaggcatacaccaccacacatagctaatttttgtatctttagtagagaca-ggttttgccgtgttggccagggtggtctcaaactcctgacctt-ggtggttcacccacctcagcatcccaaagtgctaggattacaggcatgag--ccaccgcaccc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55788605 710 +  59248254 gtagctggaattacaggttcccgccaccacacccagctaa-ttctgtatttt--tagtagagacgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggtctcccaaagtgctgggattacaggcgtgaaccgctgcacccagcc---------Ctttttttt--------ccttggaggcaagaactcactctgt-tccccaggctggagtccagcagcacagtgatggctc-----------actccagttcctgggctcaagcaatcctcctacctcagtttctgagtagccaggtttgtaagcatgaaccattgcacccagccaTGGCTGCTTGTCTGCCTGCTCACGAGAGCCAGTTGTCATTGGATTGTGTTTTGTTTGTTGGGTTTTGTTGGGGTTTTGG-gttttgttttgtttt----------------------gttttgttttCtgagatggagtctcgctctgttgcccaggctggggtatagtggt---gtagtatctcagctaactgcaacctccgcctcccaggttcaggctattctcatgcctcagcctcccatgtagctgggattacaggcatacaccaccacacatagctaatttttgtatctttagtagagaca-ggttttgccgtgttggccagggtggtctcaaactcctgacctt-ggtggttcacccacctcagcatcccaaaatgctaggattacaggcatgag--ccaccgcaccc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47894661 702 +  51301725 gtagctggaattacaggttcccgccaccacacccagctaa-ttctgtatttt--tagtagagatgggctttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccgcccgcctcggtctcccaaagtgctgggattacaggcgtgaaccgctgcacccagcc---------c-ttttttt--------ccTTGGAGGCAAGaactcactctgt-tccccaggctggagtccagcagCACAGTGATGGCTC-----------ACcccagttcctgggctcaagcaatcctcctacctcagttccTGAGTAGCCAGGTTTGTAAAcatgaaccattgcacccagccatgGCTGCTTGTCTACCTGCTCGCGAGAGCCAgttgtcattggattgtgttttgtttgttgggttttgttggggttttgg-----------gtttt----------------------gttttgttttctgagatggagtctcgctctgttgcccaggctggggtatggTGGTGTAGTAgtatctcagctaactgcaacctccgcctcccaggttcaggctattctcatgcctcagcctcccatgtagctgggattacaggcatacaccaccacacatagctaatttttgtatctttagtagagaca-ggttttgccgtgttggccagggtggtcttgaactcctgacctt-ggtggttcacccacctcagcatcccaaagtgctaggattacaggcatgag--ccaccgcaccc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47602342 705 +  50890351 gtagctggaattacaggttcccgccaccacacccagctaa-ttctgtatttt--tagtagagacgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggtctcccaaagtgctgggattacaggcgtgaaccgctgtacccagcc---------Ctttttttt--------ccttggaggcaagaactcactgtgt-tccccaggctggagtccagcagaacaatgatggctc-----------actccagttcctgggctcaagcaatcctcctacctcagctcctgagtagctaggcttgtaagcatgagccattggacccagccaTGGCTGCTTGTCTACCTGCTCACGAGAGCCAGTTGTCATTGGATTGTGTTTTGTTTGCTGGGTTTTGTTGGGGTTTTGG------Gttttgtttt----------------------gttttgttttctgagatggagtctcgctctgttgcccgggctggggtatagtggt---gtagtatctcagctaactgcaacctccgcctcccaggttcaggctattctcatgcctcagcctcccatgtagctgggattacaggcatacaccaccacacatagctaatttttgtatctttagtagagaca-ggttttgccgtgttggccagggtggtctcgaactcctgacctt-ggtggttcacccacctcagcatcccaaagtgctaggattacaggcgtgag--ccactgcaccc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      6186 686 +    138250 gtagctgggattacaggtggctgccaccacgcctggctgatttctgtatttt--tagtagagacagggttttaacatgttggctaggctgatctcgaactcctgacctcaggtgatctacctgtttcagcctcccaaagtgctgggattataggtgttagccaccatgaccagcc---------Cttttttgt--------tttttgaggcaagaactcactatgtccccccaggctggagtcgagcagcacgacgacagttcgctgcaggctcaccccacctcctgggctcaagccgtcctcctgcctcactcccggagtagctaggtttac---catgagccatggcacccagccaTGGCTGC-TGTCTATCTGCTCATGAGAGCCAGTTGTCACTGGGTTGTGTTTT-TTTGTTTGATTTTTTTGGTGGGGTGGGGA--------GGCtt----------------------------------gagaaggagcgttgctctgttgcccaggctggagtgcagtggt---gtgat-----atctaactgcaacccctgcctcccagg---------ttctcgtgcctcagccccccaagtaggtgggattacaggcataagccatcaaatccagctaatttttgtatttttagtagagacggggttttgccatgttggccagcctggtcttcaaatgctgacctcaggtaatccacctgccttggcctgccaaagtgctgggattacaggcatcag--ccaccacacc-
i calJac3.chr22_GL285922_random I 456 C 0
e canFam3.chr1                   20061953 757 - 122678785 I

a score=40910.000000
s hg38.chr19_GL949751v2_alt        916678 15 +   1002683 ggccTGAGTTGTATT-
s panTro4.chr19                  59912806 15 +  63644993 ggccTGAGTTGTATT-
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843412 15 +  60714840 ggccTGAGTTGTATT-
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103353111 15 - 106955855 ggcctgagttgtatt-
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60648287 15 +  64156825 agccTGAGTTGTATT-
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55789315 15 +  59248254 agccTGAGTTGTATT-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895363 15 +  51301725 agcctgagttGTATT-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47603047 15 +  50890351 agccTGAGCTGTATT-
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      6872  9 +    138250 ------AGCtatatt-
i calJac3.chr22_GL285922_random C 0 I 893
s canFam3.chr1                   20062710 16 - 122678785 GACCTGTGTTGTCTAC
i canFam3.chr1                  I 757 C 0

a score=481332.000000
s hg38.chr19_GL949751v2_alt        916693 218 +   1002683 TTGATACCATGGCATCAAAGAACCAAGAAGCCCCTTCCTAGGAATGTGGGAACTT-------------------------------CAGAAATTCTCACAAGCAATATACTCTACTGCTGGCTTAAAATAATCTTTATGTAGAAGAAACATAGATTACTTGTTTATTTAACATGAAACTCAGCCTAAGATACTTTGTAAGTCAAAAGACATATGGACACTAAGGGTTTTTTTAAGCTTTAA-----gtttgtt--t
s panTro4.chr19                  59912821 218 +  63644993 TTGATACCATGGCATCAAAGAACCAAGAAGCCCCTTCCTAGGAGTGTGGGAACTT-------------------------------CAGAAATTCTCACAAGCAATATACTCTACTGCTGGCTTAAAATAATCTTTATGTAGAAGAAACATAGATTACTTGTTTATTTAACATGAAACTCAGCCTAAGATACTTTGTAAGTCAAAAGACATATGGACACTAAGGGTTTTTTTAAGCTTTAA-----Gtttgtt--t
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843427 218 +  60714840 TTGATACCATGGCATCAAAGAACCAAGAAGCCCCTTCCTAGGAGTGTGGGAACTT-------------------------------CAGAAATTCTCACAAGCAATATACTCTACTGCTGGCTTAAAATAATCTTTATGTAGAAGAAACATAGATTACTTGTTTATTTAACATGAATCTCAGCCTAAGATACTTTGTAAGTCAAAAGACATATAGACACTAAGGTTTTTTTTAAGCTTTAA-----Gtttatc--t
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103353126 212 - 106955855 TCGATACCATGGCGTCAAAGAACCAAGAAGCCCCTTCCTAGGAGTGTGGGAACTT------------------------------CCAGAAATTCTCACAAGCAATATACTCTACTGCTGGCTCAAAATAATCTTTATGTAGAAGAAAC--AGATTACTTGTTTATTTAACACAAATCTCAGCCTAAGATACTTTGTAAGTCAAAAGACATATGGACACTAAGGGTTTTTTTAAGCTTTAA-----Gtt-------
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60648302 213 +  64156825 TCAATACCATGGC----AAGAACCAAG-AGCCCCTTCCTAGAAGTATGGGAACTT------------------------------CCAGAAATTCTCACAAGCAATATAGTCTACTGCTGGCTTAAAATAATCTTTATGTAGAAGAAACATAGATTACTTATTTACTTAACATGAAACTGAGCTTAAGATACTTTGCAAGTCAAAAGACATATGGATGTTAAGGG-CTTTTTAAGCTTTGA-----Gtttattt--
i rheMac3.chr19                 C 0 I 10
s macFas5.chr19                  55789330 212 +  59248254 TCAATACCATGGC----AAGAACCAAG-AGCCCCTTCCTAGAAGTGTGGGAACTT------------------------------CCAGAAATTCTCACAAGCAATATAGTCTACTGCTGGCTTAAAATAATCTTTATGTAGAAGAAACATAGATTACTTATTTACTTAACATGAAACTGAGCTTAAGATACTTTGCAAGTCAAAAGACATATGGACGTTAAGGG-CTTTTTAAGCTTTGA-----Gtttatt---
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895378 212 +  51301725 TCAATACCATGGC----AAGAACCAAG-AGCCCCTTCCTAGAAGTGTGGGAACTT------------------------------CCAGAAATTCTCACAAGCAATATAGTCTACTGCTGgcttaaaataatctttatgtaGAAGAAACATAGATTACTTATTTACTTAACATGAAACTGAGCTTAAGATACTTTGCAAGTCAAAAGACATATGGACGTTAAGGG-CTTTTTCagctttga-----gtttatt---
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47603062 217 +  50890351 TCAATACCATGGCGTCAAAGAACCAAG-ATCCCCTTCCTAGAAGTTTGGGAACTT------------------------------CCAGAAATTCTCACAAGCAATACAATCTACTGCTGGCTTAAAATAATCTTTATGTAGAAGAAACATAGATTACTTGTTTACTTAACACGAATCTCAGCCTAAGATACTTTGCAAGTCAAAAGACATCTGGACGTTAAGGG-CTTTTTAAGCTTTGA-----Gtttatt-t-
i chlSab2.chr6                  C 0 I 10
s canFam3.chr1                   20062726 218 - 122678785 TTGCTACCATGGCAACAAAGAACAGTA-CAACTTTTCTTGGTCTTACCCAAGCTTGTTTAAATACTCAGATGCAAAAACAAACAAAAAGAAATACTCAGATGCAATGTAGACAACCAATGGCTTGAAATGATAATTATGTAGAAGGAAC--AGATTATATATGTACTCAAC---------------AGGTAGCTTGCTAGTCAAAAG-------------AAGGG-ATTTATAGACTCTGACATTTGTTT------
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random      6881 893 +    138250 I

a score=3689.000000
s hg38.chr19_GL949751v2_alt        916911 9 +   1002683 gtttgttta
s panTro4.chr19                  59913039 9 +  63644993 gtttgttta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843645 9 +  60714840 atctattta
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103353338 4 - 106955855 -----ttta
i nomLeu3.chr10                 C 0 C 0
s canFam3.chr1                   20062944 9 - 122678785 CTGTGTTTA
i canFam3.chr1                  C 0 I 1205
e calJac3.chr22_GL285922_random      6881 893 +    138250 I
e chlSab2.chr6                   47603279 10 +  50890351 I
e papAnu2.chr19                  47895590 0 +  51301725 C
e macFas5.chr19                  55789542 0 +  59248254 C
e rheMac3.chr19                  60648515 10 +  64156825 I

a score=5543.000000
s hg38.chr19_GL949751v2_alt        916920 20 +   1002683 ttta-----ttatttatttTGGAGA
s panTro4.chr19                  59913048 25 +  63644993 tttatttatttatttattttggaga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843654 20 +  60714840 ttta----tttattta-tttggaga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103353342 20 - 106955855 ttta----tttatgtt-tttggaga
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55789542  9 +  59248254 ----------------ttttggaga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895590  9 +  51301725 ----------------ttttggaga
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20062953 1205 - 122678785 I
e calJac3.chr22_GL285922_random      6881 893 +    138250 I
e chlSab2.chr6                   47603279 10 +  50890351 I
e rheMac3.chr19                  60648515 10 +  64156825 I

a score=637.000000
s hg38.chr19_GL949751v2_alt        916940 13 +   1002683 C--AGTTTTACTCTT
s nomLeu3.chr10                 103353362 15 - 106955855 cagagttttgctctt
i nomLeu3.chr10                 C 0 I 1521
e canFam3.chr1                   20062953 1205 - 122678785 I
e ponAbe2.chr19                  56843674  0 +  60714840 C
e calJac3.chr22_GL285922_random      6881 893 +    138250 I
e chlSab2.chr6                   47603279 10 +  50890351 I
e papAnu2.chr19                  47895599  0 +  51301725 C
e macFas5.chr19                  55789551  0 +  59248254 C
e rheMac3.chr19                  60648515 10 +  64156825 I
e panTro4.chr19                  59913073  0 +  63644993 C

a score=0.000000
s hg38.chr19_GL949751v2_alt        916953 580 +   1002683 TTTTTTGGGGTGCATCttttttcttttttttttttttttttcctttttttttttttttttttttattgatcattcttgggtgtttctcacagagggggatttggcagggtcataggacaatagtggagggaaggtcagcagataaacaagtgaacaaaggtctctggttttcctaggcagaggaccctgcggccttccgcagcgtttgtgtccctgggtacttgagattagggagtggtgatgactcttaacgagcgtgctgccttcaggatctgtttaacaaagcatatcttgcaccgcccttaatccgtttaactctgagtggacacagcacatgtttcagagagcacggggttgggggtaaggtcacagatcaacaggatcccaaggcagaagaatttttcttagtacagaacaaaatggggggctgacccccccacctccctcccggacagggcggctggccggttagaggggctcctcacttcccattaggggcggccgggcagaggcgcccctcacctcccggacagggcggctggctgggcggggggctgacccccccacctccccGCCCGGC
e canFam3.chr1                   20062953 1205 - 122678785 I
e ponAbe2.chr19                  56843674   0 +  60714840 C
e calJac3.chr22_GL285922_random      6881 893 +    138250 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e chlSab2.chr6                   47603279  10 +  50890351 I
e papAnu2.chr19                  47895599   0 +  51301725 C
e macFas5.chr19                  55789551   0 +  59248254 C
e rheMac3.chr19                  60648515  10 +  64156825 I
e panTro4.chr19                  59913073   0 +  63644993 C

a score=1187.000000
s hg38.chr19_GL949751v2_alt        917533 2 +   1002683 ca
s panTro4.chr19                  59913073 2 +  63644993 ca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843674 2 +  60714840 ca
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55789551 2 +  59248254 cg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895599 2 +  51301725 cg
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20062953 1205 - 122678785 I
e calJac3.chr22_GL285922_random      6881 893 +    138250 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e chlSab2.chr6                   47603279 10 +  50890351 I
e rheMac3.chr19                  60648515 10 +  64156825 I

a score=484265.000000
s hg38.chr19_GL949751v2_alt        917535 276 +   1002683 gagttttactcttgttgtccagcctggagcgcaatggcgctatctcggcttactgcaacctccgcctcccgggttcaagaggttctcctccctcagcctcccaagtagctgggactacaggcatgtgccaccacacctggctaatcttgtatttttaatagagaca--gggtttctccatattggtcaggctggtctcgaactcctgacttcaggtgacccgcctgcctcagcctcccaaa-gtgctaagattacaggcgtgagccaccatgcctggcc
s panTro4.chr19                  59913075 275 +  63644993 gagttttactcttgttgcccagcctgg-gcgcaatggcgctatctcggctcactgcaacctccgcctcccgggttcaagaggttcttctccctcagcctcccaagtagctgggactacaggcatgtgccaccacacctggctaatcttgtatttttagtagagaca--gggtttctccatattggtcaggctggtctcgaactcctgacttcaggtgacccgcctgcctcagcctcccaaa-gtgctaagattacagccatgagccgccatgcctggcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843676 278 +  60714840 gagttttactcttgttgcccagcctggagtgcaatggcgctatctcggctcactgcaacctctgcctcccggattcaagaggttctcctccctcagcctcccaagtagctgggactacaggcatgtgccaccacacctggctaattctgtatttttagtagagacacggggtttctccatattggtcaggctggtctcgaactcctgacttcaggtgacctgcctgcctcagcctcccaaa-gtgctaagattacaggcatgagccaccacgcctggcc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60648525 275 +  64156825 gagttttgctcttgttgcccagcctggagtgcaatggtgctatctcagctcactgcaacctccgcctcccgggttcaagcagttctcctccctcagcctcccatgtagctgggattacaggcatctg-taccacgtctggctcattttgtatctgtagtagagacg--gggttgctccctgttggtcaggctggtctcgaactcccgacttcaggtgacccgcctgcctcagcctcccaaa-gtgctgggcttacaggcgtgagccaccgcgcctggcc
i rheMac3.chr19                 I 10 C 0
s macFas5.chr19                  55789553 275 +  59248254 gagttttgctcttgttgcccagcctggagtgcaatggtgctatctcagctcactgcaacctccgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggattacaggcatgtg-taccacgtctggctcattttgtatttttagtagagacg--gggttgctccctgttggtcaggctggtctcgaactcccgacttcaggtgacccgcctgcctcagcctcccaaa-gtgctgggattacaggcgtgagccaccgcgcctggcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895601 275 +  51301725 gagttttgctcttgttgcccagcctggagtgcaatggtgctatctcagctcactgcaacctccgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggactacaggcatgtg-taccacgtctggctcattttgtatttttagtagagacg--gggttgctccctgttggtcaggctggtctcgaactcccgactgcaggtgacccgcctgcctcagcctcccaaa-gtgctgggattacaggcgtgagccaccacgcctggcc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47603289 276 +  50890351 gagttttgctcctgttgcccagcctggagtgcaatggtgctatctcagctcactgcaacctccgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggatcacacgcatgtg-taccatgtctggctcattttgtatttttagtagagaca--gggttgctccatgttggtcaggctggtcttgaactcctgacttcaggtgacccgcctgcctcggcctcccaaaggtgctgggattacaggcatgagccaccgtgcctggcc
i chlSab2.chr6                  I 10 C 0
e canFam3.chr1                   20062953 1205 - 122678785 I
e calJac3.chr22_GL285922_random      6881 893 +    138250 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I

a score=57447.000000
s hg38.chr19_GL949751v2_alt        917811 25 +   1002683 TGCATCTCCTCTGTTTAAC-TGGTAC
s panTro4.chr19                  59913350 25 +  63644993 TGCATCTCCTCTGTTTAAC-TGGTAC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843954 25 +  60714840 TGCATCTCCTCTGTTTAAC-TGGTAC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60648800 26 +  64156825 TGCATCTCCTCTGTTTAACCTGGTAC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55789828 26 +  59248254 TGCATCTCCTCTGTTTAACCTGGTAC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895876 26 +  51301725 tgcatcTCCTCTGTTTAACCTGGTAC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47603565 26 +  50890351 TGCATCTCCTCTGTTTAACTTGGTAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      7774 25 +    138250 TGCATCTCCTCTGTTGAAC-TGGTAC
i calJac3.chr22_GL285922_random I 893 C 0
e canFam3.chr1                   20062953 1205 - 122678785 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I

a score=427888.000000
s hg38.chr19_GL949751v2_alt        917836 183 +   1002683 TCCGGGGTCCACTGAGTAGAAGTTGCCAAAGTGGGTGATAGAGCGGGTAAGCAGGTATTAGAGCTATAGCCCAGCTGTACTCAGCAATTCCAT-TTTCTGTGTATGATAATCAACAAGCATCTCAAACTGCACAATGGCTATATACCATTACAAGGTTAACCTGATGTTATGTTTTTCTCTATC
s panTro4.chr19                  59913375 183 +  63644993 TCCGGGGTCCACCGAGTAGAAGTTGCCAAAGTGGGTGATAGAGCGGGTAGGCAGGTATTAGAGCTATAGCCCAGCTGTACTCAGCAATTCCAT-TTTCTGTGTATGATAATCAACAAGCATCTCAAACTACACAATGGCTATATACCATTACAAGGTTAACCTGATGTTATGTTTTTCTCTATC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56843979 183 +  60714840 TCCGGGGTCCACCGAGTAGAAGTTGCCAAAGTGGGTGATAGAGCAGGTAGGCAGGTATTAGAGCTATAGCCCAGCTGTATTCAGCAATTTCAT-TTTCTGTGTATGATAATCAACAAGCATCTAAAACTACACAGTGGCTTTATACCATTACAAGGTTAATCTGATGTTATGTTTTTCTCTATC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60648826 180 +  64156825 TCTTGGGTCCACTGAGTAGAAGTTGCCAAAGTGGGTGATGGAGCAGGTAGGCAGGTATTAGAGCTACAGCCCAGCCACACTCAGCAATTGCAT-TTTCTGTGCATGATA---AACAAGAATCTAAAAATACACAGTGGCTTGATACCATTACAAGGTTAACCTGATGTTATGTTTTTCTCTATC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55789854 180 +  59248254 TCTTGGGTCCACTGAGTAGAAGTTGCCAAAGTGGGTGATGGAGCAGGTAGGCAGGTATTAGAGCTACAGCCCAGCCACACTCAGCAATTGCAT-TTTCTGTGCATGATA---AACAAGAATCTAAAAATACACAGTGGCTTGATACCATTACAAGGTTAACCTGATGTTATGTTTTTCTCTATC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47895902 180 +  51301725 TCTTGGGTCCACTGAGTAGAAGTTGCCAAAGTGGGTGATGGAGCAGGTAGGCAGGTATTAGAGCTATAGCCCAGCCACACTCAGCAATTGCAT-TTTCTGTGCATGATA---AACAAGAATCTAAAAATACACAGTGGCTTGATACCATTACAAGGTTAACCTGATGTTATGTTTTTCTCTATC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47603591 179 +  50890351 TCTTGGGTCCACTGACTAGAAGTTGCCAAAGTGGGTGATGGAGCAGGTAGGCAGGTATTAGAGCTACAGCCCAGCCGCACTCAGCAATT-CAT-TTTCTGTGCGTGATA---AACAAGAATCTAAAAATACACAGTGGCTTGATACCACTACAAGGTTAACCTGATGTTATGTTTTTCTCTATC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      7799 179 +    138250 TCCTGGGTCTCCCAAGTAGAAGTTGCCAAGGTGGGTGATGGAGCAGGTAGGCAGGTATTGGCGCTGTAGCCCAGCCGTACCCCGCAATTCCA--TTCCTCTGAATGATCATCAGCAAGCATCTAAAACTGCACAGTGGCTTTACACCATGACAGGGTTAATC---TGCTATCTTCTCCTCTATC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20064158 175 - 122678785 TCCTGGGTCCACGAAATAGAAGTTACCAAAGTGAGCTGTGTA----GTAGGCAGGTATTAGAATTAAATCCTGGATGTATCAATCAATTCCATCTCTCCAAACATGATA---CGAGATCACCCAAGATCATTCAACCATGCAAAAGCATTACAACATTAACCTGGTAT--TCTCTTTCCCTACC
i canFam3.chr1                  I 1205 C 0
e nomLeu3.chr10                 103353377 1521 - 106955855 I

a score=90709.000000
s hg38.chr19_GL949751v2_alt        918019 44 +   1002683 A---GATCAACATGGTTGAGAATA-------AGAGGAATG-AAAAAAAGGATTAA
s panTro4.chr19                  59913558 47 +  63644993 ATCAGATCAACATGGTTGAGAATA-------AGAGGAATG-AAAAAAAGGATTAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56844162 47 +  60714840 ATCAGATCAACATGGTTGAGAATA-------AGAGGAATG-AAAAAAAGGATTAA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60649006 42 +  64156825 A---GATCAACATGGTTGAGAATA---------AGGAATG-AAAAAAAGGATTAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55790034 44 +  59248254 A---GATCAACATGGTTGAGAATA-------AGAGGAATG-AAAAAAAGGATTAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47896082 44 +  51301725 A---GATCAACATGGTTGAGAATA-------AGAGGAATG-aaaaaaaggattaa
i papAnu2.chr19                 C 0 I 984
s chlSab2.chr6                   47603770 44 +  50890351 A---GATCAACATGGTTGAGAATA-------AGAGGAATGAAAAAAAAGGATTA-
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      7978 51 +    138250 A---GATCAACATGGCTGGGAACAAGAAGAAAGAGGAATG-AACAAAAGGATTAA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20064333  0 - 122678785 C
e nomLeu3.chr10                 103353377 1521 - 106955855 I

a score=436022.000000
s hg38.chr19_GL949751v2_alt        918063 291 +   1002683 AAAGAGAAATGAAAGTCTTTAATATTACAttttattatttacttcatttattttttagacaaaaatctcactctattgctcagg-ctggagtgcaggggcccgatctcagctcactgtaacctccgcctcccaggttcaagtgattctcctgtgtcagcttcctgagtagctgggattatagggatgcaccatcacacccaactaacttttatattttta-gta-----gagatggac-tttcac-catcttgcctaggctgg-------------------------------tctcaaactcctgacctcaagtgatctgcccacctca
s panTro4.chr19                  59913605 291 +  63644993 AAAGAGAAATGAAAGTCTTTAATTTTACAttttattatttacttcatttattttttagacaaaaatctcactctattgctcagg-ctggagtgcaggggcccgatctcagctcactgtaatctccgcctcccaggttcaagtgattctcctgtgtcagcttcctgagtagctgggattatagggacgcaccatcacacccaactaacttttatattttta-gta-----gagatggac-tttcac-catcttgcctaggctgg-------------------------------tctcaaactcctgacctcaagtgatctgcccacctca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56844209 292 +  60714840 AAAGAGAAATGAAAGTCTTTAATTTTACAttttattatttacttcatttattttttagacaaaaatctcactctattgctcagg-ctggagtacaggggcccggtctcggctcactgtaacctccacctcccaggttcaagtgattctcctgtgttagccccctgagtagctgggactatagggacgcaccatcatacccagctaacttttatattttta-gta-----gagatggacttttcac-catcttgcctaggctgg-------------------------------tctcaaactcctgacttcaagtggtctgcccacctcA
i ponAbe2.chr19                 C 0 M 764
s rheMac3.chr19                  60649048 282 +  64156825 AAAGAGAAATGAAAGTCTTTAATTTTACAttttatt---------atttatttttgagacaaaaatctcactctgttgctcagg-ctggagtgcagtggcccgatctcggctcactgtaacatccacctcccaggttcaagtgattcttctgtctcagcctcctaagtagctgggactataggcatgcaccatcacacccagctaacttttatattttta-gta-----gagatggac-tttcac-catcttgcctaggctgg-------------------------------tctcaaactcctgacctcaagtgatctgcccacctca
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55790078 282 +  59248254 AAAGAGAAATGAAAGTCTTTAATTTTACAttttatt---------atttatttttgagacaaaaatctcactctgttgctcagg-ctggagtgcagtggcccgatctcggctcactgtaacatccacctcccaggttcaagtgattcttctgtctcagcctcctaagtagctgggactataggcatgcaccatcacacccagctaacttttatattttta-gta-----gagatggac-tttcac-catcttgcctaggctgg-------------------------------tctcaaactcctgacctcaagtgatctgcccccctca
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47603814 276 +  50890351 AAAGAGAAATGAAAGTCTTTAATTTTGCAtttta-------------ttatttttgagacaaaaatctcactctgttgctcagg-ctggagtgcagtagcccgatctcggctcactgtaacatccacttcccaggttcaggtgattctcctgtctcagcctcctgagtagctgggactataggcacgtaccatcacacccagctaac--ttatattttta-gta-----gagatggac-attcac-catcttgcctaggctgg-------------------------------tctcaaactcctgacctcaagtgatctgcccacctca
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      8029 312 +    138250 AAAGGGAAATGAAAGTCTTTAAttgt--------tt---------atttatttctgagac-aagatctcattctgttgctcaggcctggagtgcagtggcctgatcttggctcactataacctctgcctcccagactgaagtgattctcctgcctcagcctcctgagtagctgcggctataggtgtgtacctccacacccagctaacttttatatatatatatatttatgagacggag-tttcactcttgttacccaggctggagtgcaatggcacgatctcggttcaccgcaacctccgccttctgggttcaagcagttctcctgcctca
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20064333   0 - 122678785 C
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e papAnu2.chr19                  47896126 984 +  51301725 I

a score=60030.000000
s hg38.chr19_GL949751v2_alt        918354 60 +   1002683 ctctcccaaagtgctggcattacaggcatgacccaccacatctggccTCATTTTATATTT
s panTro4.chr19                  59913896 60 +  63644993 ctctcccaaagtgctggcattacaggcatgacccaccacatctggccTCattttatattt
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60649330 60 +  64156825 ctctctcaaagtgctggcattataggcatgacccaccacatctggccTCattttatattt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55790360 60 +  59248254 ctctctcaaagtgctggcattataggcatgacccaccacatctggccTCATTTTATATTT
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47604090 57 +  50890351 ctctctcaaagtgctcgcattataggc---acccaccacatctggccTCATTTTATATTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      8341 60 +    138250 gcctcctgagtagctgggattacaggcacgtgccaccatgcccagcgaatttttgtgttt
i calJac3.chr22_GL285922_random C 0 I 1056
e canFam3.chr1                   20064333  0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e papAnu2.chr19                  47896126 984 +  51301725 I

a score=174713.000000
s hg38.chr19_GL949751v2_alt        918414 209 +   1002683 AAAAATAAAAAATAAGCAAATCAAGCCAGGTAcagtttaggcaacatggtaaaaccccaactctactaaaaatacaaaaattagctgagcatggtggcaggtgcctgtagtcccagctactcgggaggcagaggataggatggcttgaacccaagaggcacaggttgcagtgagctgagatggtaccactgcactccagcttgggcaac
s panTro4.chr19                  59913956 209 +  63644993 aaaaataaaaaataaGCAAATCAAGCCAGGTAcagtttaggcaacatggtaaaaccccaactctactaaaaatacaaaaattagctgagcatggtggcaggtgcctgtagtcccagctactcgggaggcagaggataggatggcttgaacccaagaggcacaggttgcagtgagctgagatggtaccactgcactccagcctgggcaac
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60649390 204 +  64156825 aaaaat---aaataaGC-AATCAGGCCAGGTGCGgtctgggcaacgtggtaaaaccccaactctattaaaaatac-aaaattagctgagcatggtggcaggcgcctgtagtcccagctactcaggaggcagaggataggatggcttgaaccctagaggcacaggttgcagtgagctgaggtggtgccactgcactctatcctgggcgac
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55790420 204 +  59248254 AAAAAT---AAATAAGC-AATCAGGCCAGGTGCGgtctgggcaacgtggtaaaaccccaactctattaaaaatac-aaaattagctgagcatggtggcaggcgcctgtagtcccagctactcaggaggcagaggataggatggcttgaaccctagaggcacaggttgcagtgagctgagatggtgccactgcactctatcctgggcaac
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47604147 204 +  50890351 AAAAAT---AAATAAGC-AATCAGGCCAGGTGCGgtctgggcaacatggtaaaaccccaactctattaaaaatac-aaaattagctgagcatggtggcaggcgcctgtagtcccagctactcaggaggcagaggataggatggcttgaaccctagaggcacaggttgcagtgagctgagatggtgccactgcactctatcctgggcaac
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20064333   0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M
e calJac3.chr22_GL285922_random      8401 1056 +    138250 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e papAnu2.chr19                  47896126 984 +  51301725 I

a score=1692.000000
s hg38.chr19_GL949751v2_alt        918623 3 +   1002683 aga
s panTro4.chr19                  59914165 3 +  63644993 aga
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60649594 3 +  64156825 aga
i rheMac3.chr19                 C 0 I 7
s chlSab2.chr6                   47604351 3 +  50890351 aga
i chlSab2.chr6                  C 0 I 7
e canFam3.chr1                   20064333 0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M
e calJac3.chr22_GL285922_random      8401 1056 +    138250 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e papAnu2.chr19                  47896126 984 +  51301725 I
e macFas5.chr19                  55790624 0 +  59248254 C

a score=26406.000000
s hg38.chr19_GL949751v2_alt        918626 319 +   1002683 gagactgtctttttttttttttttttttttttttttttttttttttttGAGAtcgcccaggctggagtacagtggcacgatctcggctcactgcaagctccgcctcccgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggcgtccgccaccacgcccggctaattttttgtatttttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctgctgacctcgtgatccacccgcctcagcctcctaaagtgctgggaattacaggcgtgagccatcacgccccacctg
s panTro4.chr19                  59914168 298 +  63644993 gagactgtcttttttttttttttttttt--------------------gagatcgcccaggctggagtacagtggcacgatctcggctcactgcaagctccgcctcccgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggcgtccgccaccacgcccggctaattttttgtatttttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcagcctcctaaagtgctggga-ttacaggcatgagccatcacgcctcacctg
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20064333   0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M
e calJac3.chr22_GL285922_random      8401 1056 +    138250 I
e nomLeu3.chr10                 103353377 1521 - 106955855 I
e chlSab2.chr6                   47604354   7 +  50890351 I
e papAnu2.chr19                  47896126 984 +  51301725 I
e macFas5.chr19                  55790624   0 +  59248254 C
e rheMac3.chr19                  60649597   7 +  64156825 I

a score=6095.000000
s hg38.chr19_GL949751v2_alt        918945 12 +   1002683 agactgtctttt
s panTro4.chr19                  59914466 12 +  63644993 agactgtcttta
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103354898 12 - 106955855 agactgtcttta
i nomLeu3.chr10                 I 1521 C 0
s macFas5.chr19                  55790624 10 +  59248254 agactgtctc--
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47897110 10 +  51301725 agactgtctc--
i papAnu2.chr19                 I 984 C 0
e canFam3.chr1                   20064333  0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M
e calJac3.chr22_GL285922_random      8401 1056 +    138250 I
e chlSab2.chr6                   47604354  7 +  50890351 I
e rheMac3.chr19                  60649597  7 +  64156825 I

a score=1092.000000
s hg38.chr19_GL949751v2_alt        918957 2 +   1002683 aa
s panTro4.chr19                  59914478 2 +  63644993 aa
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103354910 2 - 106955855 aa
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random      9457 2 +    138250 aa
i calJac3.chr22_GL285922_random I 1056 C 0
e canFam3.chr1                   20064333 0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M
e chlSab2.chr6                   47604354 7 +  50890351 I
e papAnu2.chr19                  47897120 0 +  51301725 C
e macFas5.chr19                  55790634 0 +  59248254 C
e rheMac3.chr19                  60649597 7 +  64156825 I

a score=25602.000000
s hg38.chr19_GL949751v2_alt        918959 13 +   1002683 aaaaaaaaaaaaa
s panTro4.chr19                  59914480 13 +  63644993 aaaaaaaaaaaga
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103354912 11 - 106955855 aaaaaaaaaaa--
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60649604 13 +  64156825 aaagaaaaaaaga
i rheMac3.chr19                 I 7 C 0
s macFas5.chr19                  55790634 13 +  59248254 aaagaaaaaaaga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47897120 13 +  51301725 aaagaaaaaaaga
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47604361 13 +  50890351 aaagaaaaaaaga
i chlSab2.chr6                  I 7 C 0
s calJac3.chr22_GL285922_random      9459 13 +    138250 aaaaaaaaaaaaa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20064333  0 - 122678785 C
e ponAbe2.chr19                  56844501 764 +  60714840 M

a score=101607.000000
s hg38.chr19_GL949751v2_alt        918972 39 +   1002683 aa--------aTCAATGTGGAACACTCC-TTTGCCACCTAGAATAATC
s panTro4.chr19                  59914493 47 +  63644993 aagaaagaaaaTCAATGTGGAACACTCC-TTTGCCACCTAGAATAATC
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103354923 38 - 106955855 ----------aTCAATGTGGAACACTCCTTTTGCCACCTAGAATAATC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60649617 39 +  64156825 aa--------aTCAATATGGAACACTCC-TTTGCCACGTAGAATAATC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55790647 39 +  59248254 aa--------aTCAATATGGAACACTCC-TTTGCCACGTAGAATAATC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47897133 39 +  51301725 aa--------atcaatatggAACACTCC-TTTGCCACCTAGAATAATC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47604374 39 +  50890351 aa--------aTCAATATGGAACACTCC-TTTGCCACCTAGAATAATC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      9472 39 +    138250 aa--------aTCAATATGGAATGCTCC-TTTGCCACACAGAATAATC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20064333 39 - 122678785 AA--------ATCAATATGGAACCCTGA-TTTGCAGCATACAGTAATC
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56844501 764 +  60714840 M

a score=1563064.000000
s hg38.chr19_GL949751v2_alt        919011 531 +   1002683 AGGAAAGGTGACCCATGCCCTGTGCCTCCT---------TAACAGAC-TTTCAGGTACTTGGGAATTTGAAACAAATCTCCTTGATGCACAAAGTAACCTTTTCTTCCCCCATTGT-ACCCCAGGTTGAAAATCGATGACTTTAATGATGAACTCAATAAGCTGCTGGAAGAAATAGAAGAAAAAAACCCACAACTGATTATTGATACTGAGAAACATCATCCCTGGGCAGAAAGGCCTTCTTCTCATGACTTCATGATCTGAAT-CCCCCCGAGTCATTCATTCTCCA-TGAAGTCATCGATTTTCCAGGTGTTGGTGAACTGCCTGTGACTCCTCTCCTCCCCGGCCCCTACCCCTCAGGGATAATGAGTTCATTGCTGGGCTAGATGT---TTTAGCCATGATTCTGCCTCTGTTTTAT-----ACCTGCACACATC-----CTTATCTTTGTTACATATGAAATATCTGTATCACGGGTATATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTGTTACTTAATAATGGGCTTTGACAAGTTAGAG
s panTro4.chr19                  59914540 531 +  63644993 AGGAAAGGTGACCCATGCCCTGTGCCTCCT---------TAACAGAA-TTTCAGGTACTTGGGAATTTGAAACAAATCTCCTTGATGCACAAAGTAACCTTTTCTTCCCCCATTGT-ACCCCAGGTTGAAAATAGATGACTTTAATGATGAACTCAATAAGCTGCTGGAAGAAATAGAAGAAAAAAACCCACAACTGATTATTGATACTGAGAAACATCATCCCTGGGAAGAAAGGCCTTCTTCTCATGACTTCATGATCTGAAT-CCCCCTGAGTCATTCATTCTCCA-TGAAGTCATCGATTTTCCAGGTGTTGGTGAACTGCCTGTGACTCCTCTCCTCCCCCGCCCCTACCCCTCAGGGATAATGAGTTCATTGCTGGGCTAGATGT---TTTAGCCATGATTCTGCCTCTGTTTTAC-----ACCTGCACACGTC-----CTTATCTTTGTTACATATGAAATATCTGTATCACGGGTATATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTGTTACTTAATAATGGGCTTTGACAAGTTAGAG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845265 530 +  60714840 AGGAAAGGTGACCCATGCCCTGTGCCTCCT---------TAACAGAC-TTTCAGGTCCTTGGGAATTTGAAACAAATCTCCTTCATGCACAAAGTAACCTTTTCTTCCCCCATTGT-ACCCCAGGTTGAAAATAGATGACTTTAATGATGAACTCAATAAGCTGCTGGAAGAAATAGAAGAAAAAAACCCACAACTGATTATCGATACTGAGAAACATGATCCCTGGAAAAAAAGGCCTTCTTCTCATGACTTCGTGATCTGAATCCCCCCCGAGTCATTCATTCTCCA-TGAAGTCATCGATTTTCCAGGTGTTGGTGAACTGCCTGTGACTC--CTCCTCCCCCGCCCCCACTCCTCGGGGATAATGAGTTCATTGCTGGGCTAGATGT---TTTAGCCATGATTCTGCCTCTGTTTTAC-----ACGTGCACACGTC-----CTTATCTTTGTTACATATGAAATATCTGTATCACGGGTATATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTGTTACTTAATAATAGGCTTTGACAAGTTAGAG
i ponAbe2.chr19                 M 764 C 0
s nomLeu3.chr10                 103354961 522 - 106955855 AGGAAAGGTGACCCATGCCCTGTGCCTCCT---------TAACAGAC-TTTCAGGTACTTGGGAATTTGAAACAAATCTCCTTGATGCACAAAGTAACCTTTTCTTCCCCCATTGT-ACCCCAGGTTGAAAATAGATAACTTTAATGATGAACTCGATAAGCTGCTGGAAGAAATAGAAGAAAACAACCCACAACTGATTATTGATACTGAGAAACATGATCCCTGGAAAAAAAGGCCTTCTTCTCATGACTTCATGATCTGAATCCCCCCTGAGTCATTCATTCTCCG-TGAAGTCATCGATTTTCCAGGTGTTGGTGAACTGCTGGTGACTC--CTCCTCCCCCGCCCCCACTCCTCAGGGATCATGAGTTCATTGCTGGGCTAGGTGT---TTTAGCCATGATTCTGCCTCTGTTTGAC-----ACGTGCACACGTC----------CTTTGTTACATATGAAATATCTGTATCACGGGTATATTGAGAGAAATAAAGGTGAGA--GCAATCACAAGTGAAGCTGTTACT---TAATGGGCTTTGACAAGTTAGAG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60649656 514 +  64156825 AGGAAAGGTGA----------------CCT---------CAACAGAA-TTTCAGGTACTTGGGAATTTGAA--AAATCTTCTTGATACACAAAGTAACCTTTTCCTCCCCCATTGT-ACCCCAGGTTGAAAATAGATGACTTTAATGATGAACTTGATAAGCTGCTGGAAGAAATAGAAGAAAACAACCCACAACTGATTATTGATACTGAGAAACATGATCCCTGGAAAAAAAGACCTTCTTCTCATGACTTCATGATCTGAATCCCCCCAGAGTCGTTCATTCTCCA-TGAAGTCGTTGATTTTCCAGGTGTTGGTGAACTGCCTGTGACTCCTCTTCTCCCCCGCCCCCACTCCTCAGGGATAATGAGCTCACTGCTAGGCTAGATGT---TTCAGCCATGGTTCTGCCTCTGTTTTAC-----ACGTGCACACGTC-----CTTAACTTTGTTACATATGAAATATCTGTATCACGGGTACATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTGTTACTTAATAATGGACTTTGACACGTTAGAG
i rheMac3.chr19                 C 0 I 305
s macFas5.chr19                  55790686 514 +  59248254 AGGAAAGGTGA----------------CCT---------CAACAGAA-TTTCAGGTACTTGGGAATTTGAA--AAATCTTCTTGATAAACAAAGTAACCTTTTCCTCCCCCATTGT-ACCCCAGGTTGAAAATAGATGACTTTAATGATGAACTCCATAAGCTGCTGGAAGAAATAGAAGAAAACAACCCACAACTGATTATTGATACTGAGAAACATGATCCCTGGAAAAAAAGACCTTCTTCTCATGACTTCATGATCTGAATCCCCCCAGAGTCGTTCATTCTGCA-TGAAGTCGTTGATTTTCCAGGTGTTGGTGAACTGCCTGTGACTCCTCTTCTCCCCCGCCCCCACTCCTCAGGGATAATGAGCTCACTGCTAGGCTAGATGT---TTCAGCCATGGTTCTGCCTCTGTTTTAC-----ACGTGCACACGTC-----CTTAACTTTGTTACATATGAAATATCTGTATCACGGGTACATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTGTTACTTAATAATGGACTTTGACACTTTAGAG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47897172 510 +  51301725 AGGAAAGGTGA----------------CCT---------CAACAGAATTTTCAGGTACTTGGGAATTTGAA--AAATCTTCTTGATACACAAAGTAACCTTTTCCTCCCTCATTGT-ACCCCAGGTTGAAAATAGATGACTTTAATGATGAACTCCATAAGCTGctggaagaaatagaagaaaacaacccACAACTGATTATTGATACTGAGAAACATGATCCCCGGaaaaaaaGACCTTCTGCTCATGACTTCATGATCTGAATCCCCCC-GAGTCGTTCATTCTCCA-TGAAGTCgttgattttccaggtgttggtGAACTGCCTGTGACTCCTCTTCTCCCCCGCCCCCACTCCTCAGGGATAATGAGTTCACTGCTAAGCTAGATGT---TTCAGCCATGGTTCTACCTCTGTTTTAC-----ACGTGCACACGTC-----CTTAACTTTGTTACATATGAAATATCTGTATCACTGGTACATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTG----TTAATAATGGACTTTGACACGTTAGAG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47604413 511 +  50890351 AGGAAAGGTGA----------------CCT---------CAACAGAA-TTTCAGGTACTTGGGAATTTGAA--AAATCTTCTTGATACACAAAGTAACCTTTTCCTCCCGCATTGT-ACCCCAGGTTGAAAATAGATGACTTTAATGATGAACTCCATAAGCTGCTGGAAGAAATAGAAGAAAACAACCCACAACTGATTATTGATACTGAGAAACATGATCCCTGGAAAAAAAGACCTTCTTCTCATGACTTCATGATCTGAATCCCCCCAGAGTCATTCATTCTCCA-TGAA---GTTGATTTTCCAGGTGTTGGTGAACTGCCTGTGACTCCTCTTCTCCCCCACCCCCACTCCTCAGGGATAATGAGTTCACTGCTAGGCTAGATGT---TTCAGCCATGGTTCTGCCTCTGTTTTAC-----ACGTGCACACGTC-----CTTAACTTTGTTACATATGAAATATCTGTATCACGGGTACATTGAGAGAAATAAAGGTGAGA--GCATTCACAAATGAAGCTGTTACTTAATAATGGGTTTTCACAAGTTAGAG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random      9511 514 +    138250 AGGAAAGGTGAGCCATGCTCTGTG---CCT---------------------------CTTGGAACTTTGAAACAAGTCTCCTTGACACAAAAAGTAACCTTTTCTTCCCCCATTGT-ACCCCAGGTTGAAAGTAGATGACTTTACTGATGAACTCGATACGCTGCTGACTGAGATAGAAGACAGCAACCCGCAGCTGACTATTGATACCGAGAGTCAAGAGCCCTGGAAGAAAAGGCCTTCTTCTCGCTACTTCACCGTCTGAATCCCCCCAGAGTCCTTCATTCTCAG-GGAAGACAAGCATTTCCCAGGTGTTGGTGAACTGCCTGCGACTC--CCCCCACCCTGCCCCCTCTCCTCGGGGA-AAGGAGCTGGTTGCTGGGCCAGGTGT---TTTAGCCGCGGTTCTGCCTCTGGTTCACGTAGAACCTGCATACGTC-----CTTGACCTTGTTACGTATGAAACGTCTGTATCACGGGTGTGTGGAGGGAAATAAAGGTGAGA--GCATTCGCAGATGAAGCTGTTACATAGTAATGGGCTGTGACCAGTTAGAG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20064372 521 - 122678785 AGTAAATATTGCCCCTGCC--------CCTGCTCTAAAGTATGAGAC-TTGCAGGCACTTGGGCATTTGGAATGAATCTCCTTGAAGCAACAAGAAACCTTCCTTTGTCCCATTGTAACTCCAGGTTGAAGATAGATGAATCTGATCCTCGAATCCAGAAGCTGCTAAAAGAAATCCAAGAATATGACCCACAACTGACCATCGAGAGTGATGACCAAGATCCAACCAATAACCGGCCTTCTTCACATGACTTCATTTTCTGAAT-CCCCTGGACTTATTCCTTCCCAAGTAAAATCCAGGATCATCAACATGATGTTGAACTTCCTCTGAGCC--------------------CTCTCAGTGAT-----GTTATGTGCTGGGCCAGATGTTACTGTATCCCTGGTTGTGCCTTCAGCTTCTATGAAACATGCACAGGTGGTTTACTTACCCCTATTATGGACAGAATGCCTATATCTTGAGTCTATCAAGAGCAATAAAGGTGTGAATGCATTCATGAAGGAGATTCT---TTATTAATGGATTCTGACCAAACATAG
i canFam3.chr1                  C 0 C 0

a score=17443.000000
s hg38.chr19_GL949751v2_alt        919542 6 +   1002683 --AAAAGA-
s panTro4.chr19                  59915071 6 +  63644993 --AAAAGA-
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845795 6 +  60714840 --AAAAGA-
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355483 6 - 106955855 --AGAAGA-
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60650475 6 +  64156825 --aaaaGA-
i rheMac3.chr19                 I 305 C 0
s macFas5.chr19                  55791200 6 +  59248254 --AAAAGA-
i macFas5.chr19                 C 0 I 317
s papAnu2.chr19                  47897682 6 +  51301725 --AAAAga-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47604924 6 +  50890351 --AAAAGA-
i chlSab2.chr6                  C 0 I 304
s calJac3.chr22_GL285922_random     10025 6 +    138250 --AAAAGA-
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20064893 9 - 122678785 ACAGAAAAA
i canFam3.chr1                  C 0 C 0

a score=7153.000000
s hg38.chr19_GL949751v2_alt        919548 3 +   1002683 TAT
s panTro4.chr19                  59915077 3 +  63644993 TAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845801 3 +  60714840 TAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355489 3 - 106955855 TGT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60650481 3 +  64156825 TAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55791523 3 +  59248254 TAT
i macFas5.chr19                 I 317 C 0
s papAnu2.chr19                  47897688 3 +  51301725 tat
i papAnu2.chr19                 C 0 I 585
s calJac3.chr22_GL285922_random     10031 3 +    138250 TAC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20064902 3 - 122678785 TAC
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=210578.000000
s hg38.chr19_GL949751v2_alt        919551  96 +   1002683 CTTA-CTGGGTAGAACCT----------GGGGGGTGGGGGAAG-TGACAGTGTTTAATTGCATTGATTTCTATTGCCTTGTCAATCTTTGCCTTGCCT---TGGTATTTCC
s panTro4.chr19                  59915080  96 +  63644993 CTTA-CTGGGTAGAACCT----------GGGGGGTGGGGGAAG-TGACAGTGTTTAATTGCATTGATTTCTATTGCCTTGTCAATCTTTGCCTTGCCT---TGGTATTTCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845804  96 +  60714840 CTTA-CTGGGGAGAACCT----------GGGGGGTGGGGGAAA-TGACAGTGTTTAATTGCATTCATTTCTATTCCCTTGTCAATCTTTGCCTTGCCT---TGGTATTTCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355492  95 - 106955855 CTCA-TTGGGGAGAACCT-----------GGGGCTGGGGGAAG-TGACCATGTTTAATTGCGTTGATTTCTATTGCCTTGTCAATCTTTGTCTTGCTG---TGGTAttttc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60650484 100 +  64156825 CTTA-CTGGGGAGAACCT----------GGGGGGTGGGGGAAGTTGACAGTGTTTAATTGCATTGATTTCTATTGCCTTGTCAATCTTTGCCTTGCCTTCTTGGTATTTCC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55791526 100 +  59248254 CTTA-CTGGGGAGAACCT----------GGGGGGTGGGGGAAGTTGACAGTGTTTAATTGCATTGATTTCTATTGCCTTGTCAATCTTTGCCTTGCCTTCTTGGTAtttcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898276 100 +  51301725 cTTA-CTGGGGAGAacct----------ggggggtgggggaagttgACAGTGTTTAATTGCATTGATTTCTATTGCCTTGTCAATCTTTGCCTTGCCTTCctggtatttcc
i papAnu2.chr19                 I 585 C 0
s calJac3.chr22_GL285922_random     10034  89 +    138250 CTTA-CTGGGGAGAACTT-----------GGGGGTGGGGGAGG--GACTGTGTTTAGTTGCATTGATTTCTGTCGCTTTGCCAGTCTTTGCCT--------TCGTAtttcc
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20064905 105 - 122678785 TTTATTTGGGGAGAACCTAACACAGAAGGAAAAACGGGGACAG--AAATGTTTGTGATCTCCTTGGTCTGT-TCACCTTGCCAGTCACTGCCCAGTTC---TGGCATTCCT
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=2092.000000
s hg38.chr19_GL949751v2_alt        919647 20 +   1002683 tttcttttttcttttctttt
s panTro4.chr19                  59915176 12 +  63644993 tttcttttttc--------t
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845900 11 +  60714840 tttcttttttc---------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355587 20 - 106955855 tttcttttatctttcttttt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60650584 20 +  64156825 Tttttttttttttttttttt
i rheMac3.chr19                 C 0 I 166
s macFas5.chr19                  55791626  6 +  59248254 tttttt--------------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898376  5 +  51301725 ttttt---------------
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065010  0 - 122678785 C
e calJac3.chr22_GL285922_random     10123  0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=53952.000000
s hg38.chr19_GL949751v2_alt        919667 45 +   1002683 tttttttttttttttttagac---tgagtttcactctgttgcccacgc
s panTro4.chr19                  59915188 45 +  63644993 ttctttcttttttttttagac---tgagtttcactctgttgcccacgc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845911 42 +  60714840 -tttttcttttttttttagac-----agtttcactctgttgcccatgc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355607 43 - 106955855 tttttttttttttttATAAAAGAATGAGTTTCATTCTGTTGCC-----
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55791632 46 +  59248254 ttttttctttttttttaagat--ttgaatttcactctgttgcccatgc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898381 46 +  51301725 ttttttttttttttttaagat--ttgaatttcactctgttgcccatgc
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     10123 45 +    138250 tttttctttctttcttgagat---ggagctgcactctgttgcccaggc
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20065010  0 - 122678785 C
e chlSab2.chr6                   47604930 304 +  50890351 I
e rheMac3.chr19                  60650604 166 +  64156825 I

a score=137868.000000
s hg38.chr19_GL949751v2_alt        919712 139 +   1002683 tggagtacactggcacgatctcagcttactacaacctggcaggttcaagcgattctcctgtctcagcctcctgagtagctgggattacaagcatcccccaccacacccggctaaatttttttgt---atttttaatagagat
s panTro4.chr19                  59915233 139 +  63644993 tggagtacactggcacgatttcagcttactacaacctcccaggttcaagcgattctcctgtctcagcctcctgagtagctgggattacaagcatcccccaccacacccggctaaatttttttgt---atttttaatagagat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56845953 139 +  60714840 tggagtacagtggcacgatctcagcttactacaacctctcaggttcaagcgattctcctgtctcagcctcctgagtagctgggattacaggcatccctcaccacacccagctaaatttttttgt---atttttagtagagat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355650  94 - 106955855 ---------------------------------------------caagcgattctcctgtttcagcctcatgagtagctgcgattacaggcatcccccaccacacccggctaaatttttttct---atttttagtagagat
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55791678 139 +  59248254 tggagtgcagtggcacgatctcagctcattacaacctcccaggttcaagcgatt---ctgtctcagcctcccgagtagctgggattacaggcattccccaccacacccagctaaattttttttttaaattcttagtacagat
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898427 139 +  51301725 tggagtgcagtggcacgatctcagctcactacaacctcccaggttcaagtgatt---ctgtcttagcctcccgagtagctgggattacaggcattccccaccacacccagctaatttttttttttatattcttagtacagat
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065010   0 - 122678785 C
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I
e rheMac3.chr19                  60650604 166 +  64156825 I

a score=374869.000000
s hg38.chr19_GL949751v2_alt        919851 242 +   1002683 gaggtttcaccatgttggccagtctggtctcaaactcctgacctcaagtgatccacccacctcagcctcccagagtgctgggattacaggcatgagccactgtacccggctttttttttttt--ctttttctt--tttcctcaagcatgag-----------tgttgctc---tgttgcccaggctggaatacagcagcatgatgatagctcactgcagcctcaagctcccaggttcaagcgatcctccagcctcagcct
s panTro4.chr19                  59915372 233 +  63644993 gaggtttcaccatgttggccagtctggtctcaaactcctgacctcaagtgatccacccacctcagcctcccagagtgctgggattacaggcatgagccactgtacccggctttttttttt-----------tt--tttcctcaagcacgag-----------tgttgctc---tgttgcccaggctggaatacagcagcatgatgatagctcactgcagcctcaagctcccaggttcaagcgatcctccagcctcagcct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56846092 243 +  60714840 gaggtttcaccatgttggccagtctggtcttaaactcctgacctcaagtgatccgtccacctcagcctcccagaatgctgggattaca-gcgtgagccactgcacccggctttttttttttttcctttttctt--tttcctcaagcatgag-----------tgttgctc---tgttgccctggctggaatacagcagcgtgatgatagctcgctgcagcctcaagctcccaggttcaagcgatcctccagcctcaacct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103355744 243 - 106955855 gaggtttcaccatgtcggccaggctggtctcaaactcctgacctcaagtgatccgcccacctcagcctcccagaatgctgggattacaggcacgagccactgcacccggcttttttttt------------tt--tcccctcaagcatgagtgttgttgctctgttgctc---tgttgcccaggctggaatccagcagcatggttatagctcactgcagcctcaagcacccaggttccagcgatcctccagcctcaacct
i nomLeu3.chr10                 C 0 I 837
s rheMac3.chr19                  60650770 235 +  64156825 gaggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccgcccacct-aaactcccagagtgctgggattataggcatgagccactgtacccagcctttttttttttt--------tt--cctcctcaagagtgag-----------tgttgctctgttgttgcccaggttggagtacaacagcacg---atagctcactgcagcctcaagcttgcaggttcaagtgatcctccagcctcaacct
i rheMac3.chr19                 I 166 C 0
s macFas5.chr19                  55791817 235 +  59248254 gaggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatccgcccacct-aaactcccagagtgctgggattataggcatgagccactgtacccagcctttttttttttt--------tt--tctcctcaagagtgag-----------tgttgctctgttgttgcccaggttggagtacaacagcacg---atagctcactgcagcctcgagctcgtaggttcaagtgatcctccagcctcaacct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898566 234 +  51301725 gaggtttcaccatgttgaccaggctggtctcaaactcctgacctcaagtgatccgcccacct-aaactcccagagtgctgggattataggcatgagccactgtacccggcccttttttttttc--------ttccccccctCAAGAgtgag-----------tgttgctc---tgttgcccaggttggagtacaacagcacg---atagctcactgcagcctcaagctcgcaggttcaagtgatgctccagcctcaacct
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065010   0 - 122678785 C
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=236535.000000
s hg38.chr19_GL949751v2_alt        920093 196 +   1002683 cctcagtagctgggactacaggtgcacaccaccaaaccaggccaatttttgtggga-----------ttttttttgaagacagggtctcactatgttgcccaggctgatctcaaactcccaggcgcaagtaatattcctgcctcagcctcccaaagtgctagga-ttacaggtgtgaaccactgtgcctagccTGTCTTGTTACTTGT
s panTro4.chr19                  59915605 195 +  63644993 cctcagtagctgggactacaggtgcacaccaccaaaccaggccaatttttgtggga------------tttttttgaagacagggtctcactatgttgcccaggctgatctcaaactcccaggcgcaagtaatattcctgcctcagcctcccaaagtgctagga-ttacaggtgtgaaccactgtgcctagccTGTCTTGTTACTTCT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56846335 195 +  60714840 cctcagtagctgggactacaggtgcacaccaccaaaccaggccaatttttgtggga------------tttttttgaagacagggtctcactatgtcgcccaggctgatctcaaactcccaggctcaagtaatattcctgcctcagcctcccaaagtgctggga-ttacaggtgtgagccaGTGTGTCTAGTCTGTCTTGTTACTTCT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60651005 207 +  64156825 cctcagtacctgtgactacagatgcacgccaccaaaccaggccagttcttggggttttttttttttcttttttttttgaacaggttctcactatgttgcccaggctggtctcaaactcccaggctcaagtaatattcctgcctcagcctcccaaagtgctggga-ttacaagtgtgagccactgtgcccagccTGCCTTGTTATTTCT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55792052 201 +  59248254 cctcagtagctgtgactacagatgcacgccaccaaaccaggccagttcttggggtttttt-------ttttttttcaagacagggtctcactatgttgcccaggctggtctcaaactcccaggctcaagtaatactcctgcctcagcctcccaaagtgctgggatttacaagtgtgagccactgtgcccagccTGCCTTGTTATTTCT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898800 199 +  51301725 cctcagtagctgtgactacagatgcacgccaccaaaCCAGGCCAgttcttggggttttt--------ttttttttgaagacagggtctcactatgttgcccaggctggtctcaaactcccaggctcaagtaatattcctgcctcagcctcccaaagtgctggga-ttacaagtgtgagccactgtgcccagcctgccttGTTATTTCT
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065010   0 - 122678785 C
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e nomLeu3.chr10                 103355987 837 - 106955855 I
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=185509.000000
s hg38.chr19_GL949751v2_alt        920289 125 +   1002683 TGACCTGCGTGGATCACTGCCTGCTGAGTATTACTTGCCAGAGGATTTCTCCTACCAA-TCTACAATA-----------TTTTAGGTGCTTCGGTGTAGCTCATATATGACCATGTCATTGCTCTGATTTTGCTTTT
s panTro4.chr19                  59915800 125 +  63644993 TGACCTGCGTGGATCACTGCCTGCTGAGTATTACTTGCCAGAGGATTTCTCCTACCAA-TCTACAATA-----------TTTTAGGTGCTTCGGTGTAGCTCATATATGACCATGTCATTGCTCTGATTTTGCTTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56846530 125 +  60714840 TGACCTGCGTGGATCACTGCCTGCTGAGTATTACTTGCCAGAGGATTTCTCCTACCAA-CCTACAGTA-----------TTTTAGGTGCTTGAGTGTAGCTCATATATGACCATGTCATTGCTCTGATTTTGCTTTT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60651212 124 +  64156825 TGACCTGCATGGATCACTGCCTGTTGAGTGTTACTTGCCAGAGGATTTCTCCTACCAA-CATCCAATA-----------TTTTAGGTGCTTCAGTGTAGCTCATATACAACCATGTCATTGCTCTGA-TTTGCTTTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55792253 124 +  59248254 TGACCTGCATGGATCACTGCCTGTTGAGTGTTACTTGCCAGAGGATTTCTCCTACCAA-CATCCAATA-----------TTTTAGGTGCTTCAGTGTAGCTCATATACGACCATGTCATTGCTCTGA-TTTGCTTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47898999 124 +  51301725 TGACCTGCATGGATCACTGCCTGTTGACTGTTACTTGCCAGAGGATTTCTCCTACCAA-CATACAATA-----------TTTTAGGTGCTTCAGTGTAGCTCATATACGACCATGTCATTGCtctga-tttgctttt
i papAnu2.chr19                 C 0 C 0
s canFam3.chr1                   20065010 127 - 122678785 TGATCTGTGTGGGTAGCTGCCTGATGG----TCTTCTTCAGAGTATTTCTCCTACCAATCCTACAACAGTTTGTAGCATTCTTAAGTGCTTCAGTGAAGCCCATATATGA-----TCATTTCTTTGA-TCAACTTTT
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e nomLeu3.chr10                 103355987 837 - 106955855 I
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=24787.000000
s hg38.chr19_GL949751v2_alt        920414 15 +   1002683 TAAAAATTCTAACTT
s panTro4.chr19                  59915925 15 +  63644993 TAAAAATTCTAACTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56846655 15 +  60714840 TAAAAATTCTAACTT
i ponAbe2.chr19                 C 0 T 32152
s nomLeu3.chr10                 103356824  9 - 106955855 taaaaatac------
i nomLeu3.chr10                 I 837 C 0
s rheMac3.chr19                  60651336 15 +  64156825 TAAAAATTCCAACTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55792377 15 +  59248254 TAAAAATTCCAACTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47899123 15 +  51301725 taaaaattccaactt
i papAnu2.chr19                 C 0 C 0
s canFam3.chr1                   20065137 15 - 122678785 TAGTAATTCCAACCT
i canFam3.chr1                  C 0 I 1307
e calJac3.chr22_GL285922_random     10168  0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=47356.000000
s hg38.chr19_GL949751v2_alt        920429 51 +   1002683 AAAATAGAATCT------Cggccaggcacggtggctcacacctgtaatcccagc-act
s panTro4.chr19                  59915940 51 +  63644993 AAAATAGAATCT------Cggccaggcacggtggctcacacctgtaatcccagc-act
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103356833 50 - 106955855 aaaaaaaaa--t------tagctgggcgtggtggcgggcgcctgtagtcccagctact
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60651351 57 +  64156825 AAAATAGAATCTTTTCTATTGCCAGGCACGGTGGCTTACATCTGTAATCGCAGC-act
i rheMac3.chr19                 C 0 I 864
s macFas5.chr19                  55792392 57 +  59248254 AAAATAGAATCTTTTCTATTGCCAGGCACGGTGGCTTACATCTGTAATCACAGC-act
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47899138 57 +  51301725 AAAATAGAATCTTTTCtattgccaggcacggtggcttacatgtgtaatcgcagc-act
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168  0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=8146.000000
s hg38.chr19_GL949751v2_alt        920480 16 +   1002683 tcgggaggctgaggtg
s panTro4.chr19                  59915991 16 +  63644993 tcgggaggctgaggtg
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103356883 16 - 106955855 tggagaggctgaggca
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55792449 14 +  59248254 --cctaagctcaggtg
i macFas5.chr19                 C 0 I 65
s papAnu2.chr19                  47899195 16 +  51301725 ttgggaggctgaggtg
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168  0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I
e rheMac3.chr19                  60651408 864 +  64156825 I

a score=217037.000000
s hg38.chr19_GL949751v2_alt        920496 502 +   1002683 ggtggat--cacgaagtcaggagttggaga------------------------------ccaacctggccaacgtggtgaaaccccgtctctactaaaaatataaaaaattagccaggcatggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttaaacccaggaggtggatgttgcactgtgctgaagactgcactactgcattccagcttgggcaacagagtgactccttctcc-----aaaaaaaaacaaaaTCTCATGGTATGCATAGTTTTTCACTATAGAGTCTCCATTATTTCCTTGTGATACAGAATTCCAAATTCAACAAAGCAGCAGTGCAAGCTCTACGctgtaaaaccacaaacaaaacgaactgtactataaagacaacactagttggcaaagttgcttctcatggggagac-------tt--tgttgctgtctgtgtttactggatgagcaaacaaatggacggtAAGGGGGAAAAAGAACAGTACAAATTTTTATTAAACACT-----AATCATG
s panTro4.chr19                  59916007 507 +  63644993 ggtggat--cacgaagtcaggagttggaga------------------------------ccaacctggccaacgtggtgaaaccccgtctctactaaaaatataaaaaattagccaggcatggtggtacatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttaaacccaggaggtggatgttgcactgtgctgaagactgcactactgcattccagcttgggcaacagagtgactccttctccaaaaaaaaaaaaaaaaaaaTCTCATGGTATGCATAGTTTTTCACTATAGAGTCTCCAGTATTTCCTTGTGATACAGAATTCCAAATTCAACAAAGCAGCAGTGCAAGCTCTACGctgtaaaaccacaaacaaaacgaactgtactataaagacaacactagttggcaaagttgcttctcatggggagac-------tt--tgttgctgtctgtgtttactggatgagcaaacaaatggacggtAAGGGGGAAAAAGAACAGTACAAATTTTTATTAAACACT-----AATCGTG
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103356899 533 - 106955855 ggagaatggcgtgaacccgggaggcagagcttgcagtgagcgagattgtgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaatatataaaaaattagacaggcatggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttaaacccaggaggtggaggttgcactgtgctgaagactgcattactgcattccagcttgggcaacagagtgactccttctccaaaaaaaaaaaaaaaaaaaTCTCATGGTATGCATAGTTTTTCACTACAGAGTCTCCAGTATTTCCTTGTGATACAGAATTCCAAATTCAACAAAGCAGCAGTGCAAGCTCTATGctgtaaaaccacaaacaaaaggaactgtactataaagacgacactagttggcaaagttgcttctcatggggAGAC-----------TGTTG----CTGTGTTTACTGGATGAGCAAACAAAT----GGTAAGGGGGAAAAATAACAGTACAAATTTTTATT-AATACTAATAAAATCATG
i nomLeu3.chr10                 C 0 I 2
s papAnu2.chr19                  47899211 492 +  51301725 ggcggat--cacaaggtcgggagttcgaga------------------------------ccagactggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgtggtggcacgtgcctgtaatctcagctacttgggaggctgaggcaggagaattgcttaaacccagaaggcggaggttgcattgagttgAAGACtgcgctattgcactctagcctgggcaac--agcaactctgtctca-----aaaaaaaacaaaaa---catggtatGCCTAGTTTTTCTCTATAGAGTCTCCAGGATTTCCTTGTGATACAGAATTCCAAGTTCAACAAAGCAACAGTGCAAGCTCTACACTGTAAAACCACAAACAAAAGGAACT--------------ACTCAAGTTGGCAAAGTTGCTTCTCATGGGGAGACAATAACTTTAACATTGCTGTCTGTGTTTACTGGATGAGCAAACAAATGGATGGTAAGGGGGAAAAATAACAGTACAAGTTTTTATTAAACact-----aataaaa
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I
e macFas5.chr19                  55792463  65 +  59248254 I
e rheMac3.chr19                  60651408 864 +  64156825 I

a score=171291.000000
s hg38.chr19_GL949751v2_alt        920998 271 +   1002683 tttttttttgtttgttttgagacagtttc-ttct-tgttgcccaggctggagtgcaatggcacgattttggctcactgcaacctccgcctccccgggttcaagcgattctcttgcctcgacctactgagtagctgggattataggcatgtgccaccaagcctggctaa-ttttgaatttttagcagagacggggtttttccatgttggtcaggctggtctcgaactcccgacctcaggtgatccaccagccttggtctcccaaagtgctgggat
s panTro4.chr19                  59916514 267 +  63644993 -ttttttttgtttgttttgagacagtttc-ctct-tgttgcccaggctggagtgcaatgacacgattttggctcactgcaacctccgcctccccgggttcaagcgattctcttgcctcgacctactgagtagctgggattacaggcatgtgccaccaagcctggctaa-ttttg---tattagcagagacggggtttttccatgttggtcaggctggtctcgaactcccgacctcaggtgatccaccggccttggtctcccaaagtgctgggat
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103357434 271 - 106955855 tttttgtttgttt-ttttgagacaggttcactct-tgttgcccatgctggagtgcaatggaactattttggctcattgcaacctccacctccccaggttcaagcgattctcctgcctcaacctcccaagtacctggtattatatgcatatgccaccccgcctacctaa-ttttgtatttttagcaaaaacggggtttttccatgttggtcaggctggtctccaactcccgaactcaagtgatccaccggccttggtctcccatagtgctgggat
i nomLeu3.chr10                 I 2 M 100
s macFas5.chr19                  55792528 273 +  59248254 ttctttttttttttctttgtggcagaatcttgctatgtcgcccaggctggagtgcaatggcacaatctcagctcattgcagcctccgcctcctc-atttcaagcaattctcccatctcagcctcccatgtagctgggaccacaggtgtgcaccactgcacccaggtaatttttgtattttttgtagagacagggtttcaccaggttgcccagactggtctcgaactactgagttcaggtgatctgcccagcttggcctccccaagtggtgggat
i macFas5.chr19                 I 65 C 0
s papAnu2.chr19                  47899703 269 +  51301725 --taacttttttttttttgagacagtttcactct-tgttgtccaggttggagtgcaatggcacgattttagcacaccgcaacctccacctcccctggttcaagcgattctcctgcctcggcctcccgagtagctgggattacaggtgc-cgccaccgcacctggctaa-ttttgtatttttagtagagacagggttttaccatgttgatcaggctggtctcgaagtcctaacctcaggtgatccacctgccttggtctcccaaagtgctgggat
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I
e rheMac3.chr19                  60651408 864 +  64156825 I

a score=42046.000000
s hg38.chr19_GL949751v2_alt        921269 127 +   1002683 tacaggtataagtcaccgcacctggcAACAtttttttcttttttttttttttttttttttttttttttGGTGGcagaatcttgctctttcacccaggctggaatgcaatggcacgatctcgggtcac
s panTro4.chr19                  59916781 120 +  63644993 tacagctatgagtcaccgcacctggcAACATttttttc-------cttttctttttttttttttttctggtggcagaatcttgctctttcacccaggctggaatgcaatggcacgatctcggctcac
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55792801 119 +  59248254 tgtatgtctgagccaccacacctggccAAAAGTAGtt--------ttaattttttttttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcacgatctcagctcac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47899972 107 +  51301725 tacaggcgtaagtcaccgcacccagcaaca--------------------tttctttttttttttctttgtggcagaatcttgctctgttgcccaggctggagtgcaatggcacgatctcagctcac
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e nomLeu3.chr10                 103357705 100 - 106955855 M
e chlSab2.chr6                   47604930 304 +  50890351 I
e rheMac3.chr19                  60651408 864 +  64156825 I

a score=165485.000000
s hg38.chr19_GL949751v2_alt        921396 236 +   1002683 tgcagcctccacctccccagtttaagcagttctcccatctcagcctcccatgtagctgggaccacaggtgtgcaccactgcacccaggtaa-tttttgcatttttggtagagatagggttttgccacgttgtccagactggtcttgaactcctgagctcaggtgatctgcccaccttggcctccccaaatgctgggattataggcatgagccaccacacctggtcAAAAGTAGTTTT
s panTro4.chr19                  59916901 236 +  63644993 tgcagcctccacctccccagtttaagcagttctcccatctcagcctcccatgtagctgggaccacaggtgtgcaccactgcacccaggtaa-tttttgtatttttggtagagatagggttttgccacgttgtccagactggtcttgaactcctgagctcaggtgatctgcccaccttggcctccccaaatgctgggattataggcatgagccaccacacctggTAAAAAGTAGtttt
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103357805 236 - 106955855 tgcagcctctacctcccaagtttaagcagttctcccatctcagcctcccatgtagctgggaccacaggtgtgcaccactgcacccaggtaa-tttttgtatttttggtaaagatagggtttcgccacgttgcccagactggtcttgaactcctgagctcaggtgatctgcccaccttggcctccccaagtgctgggattataggcatgagccaccacacctggtcAAAAGTAGTTTT
i nomLeu3.chr10                 M 100 C 0
s macFas5.chr19                  55792920 222 +  59248254 tgcaagctccgcctcctgggccgacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgcctccgcacccggctaattttttgtatttttagtagagacgggatttcactgtgttagccaggatggtctcgatctcctgacctt--gtgatccacccggctcggcctcccagactgctgggattacaggcgtgagccaccgcacccggc-------------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47900079 236 +  51301725 tgtagcctccacctccccatatcaagcaattctcccatctcagcctcccatgtagctgggaccacaggtgtgcaccactgcagccaggtaa-tttttgtattttttgtagagacagggtttcaccatgttgcccagactggtcttgaactactgagttcaggtgatctgcccagcttggcctctcCAAGTGGTGGGATTGTAtgtctgagccaccacacctggccaaaagtagtttt
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I
e rheMac3.chr19                  60651408 864 +  64156825 I

a score=209469.000000
s hg38.chr19_GL949751v2_alt        921632 166 +   1002683 AATATTTAAATTTAAAACTAAAAAAGTTAATCTCTCT-TCCTACTTTCATTTCTTCATCAGGGGCTATTGGTTTATTCCCACCGACTAGATCCAAGTTCTCTGATACTACCTTTAAACCACTCCATCACTTTCCAGTTCCACTGCATACAGTGTGGGCTTCTGAGGT
s panTro4.chr19                  59917137 166 +  63644993 aatatttaaatttaaaactaaaaaaGTTAATCTCTCT-TCCTACTTTCATTTCTTCATCAGGGGCTATTGGTTTATTCCCACCGACTAGATCCAAGTTCTCTGATACTACCTTTAAACCACTCCATCACTTTCCAGTTCCACTGCATACAGTGTGGGCTTCTGAGGT
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103358041 166 - 106955855 AATATTTAAATTTAAAACTAAAAAAATTAATCTCTCT-TCCTACTTTCATTTCTTCATCAGGGGCCATTGGTTTATTCTCACCGACTAGATCCAAGTTCTCTGATACTACCTTTAAACTACTCCATCACTTTCCAGTTCCACTGCATACAGTTTGGGCTTCTGAGGT
i nomLeu3.chr10                 C 0 I 16
s rheMac3.chr19                  60652272 167 +  64156825 AATATTTAAATTGAAAACTAAAAAAATTAATCTCACTCTTACACTTTCATTTCTTCATCAGGGGCCATTGGTTTATTTTTACCGACTAGATGCAAGTTCTCTGATACTACCTTTAAACCACTCCATCACTTTCCAGTTCCACTGCATACTGTGTGGGCTTCTGAGGT
i rheMac3.chr19                 I 864 C 0
s macFas5.chr19                  55793142 167 +  59248254 AATATTTAAATTGAAAACTAAAAAAATTAATCTCACTCTTACACTTTCATTTCTTCATCAGGGGCCATTGGTTTATTTTTACCGACTAGATCCAAGTTCTCTGATACTACCTTTAAACCACTCCATCACTTTCCAGTTCCACTGCATACTGTGTGGGCTTCTGAGGT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47900315 167 +  51301725 aatagttaaatttaaaactaaaaaaattaatcttactCTTACACTTTCATTTCTTCAACAGGGGCCATTGGTTTATTTTTACCGACTAGATCCAAGTTCTCTGATACTACCTTTAAACCACTCCATCACTTTCCAGTTCCACTGCATACTGTGTGGGCTTCTGAGTT
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e ponAbe2.chr19                  56846670 32152 +  60714840 T
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=129088.000000
s hg38.chr19_GL949751v2_alt        921798  92 +   1002683 TTCCTGGTTCAAGGTGTCCTTGTTCAATGCGGCATGG-GTCATTCCCTGAGCAtttt-----------------------tttttttttttgacagtctcgctccattgcccggtt
s panTro4.chr19                  59917303  99 +  63644993 TTCCTGGTTCAAGGTGTCCTTGTTCAATGTGGCATGG-GTCATTCCCTGAGCAtttt----------------gtttttgtttttttttttgacagtctcgctccattgcccggtt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56814518 100 +  60714840 TTCCTGGTTCAAGGTCTCCTTGTTCAATGGGGCACGGTGACATTCCCTGAGCAtttt----------------ttttttttttttttttttgacagtctcactccgttgcccggtt
i ponAbe2.chr19                 T 32152 C 0
s nomLeu3.chr10                 103358223  95 - 106955855 TTCCTGGTTCAACGTCTCCTTGTTCAATGGGGCATGG-GTCATTCCCTGAGCAtttt--------------------ttttttttttttttgacagtctcgctccattgcctggtt
i nomLeu3.chr10                 I 16 C 0
s rheMac3.chr19                  60652439 111 +  64156825 TTCCTGTTTCAAGGTCTCCTTACCCAACACAGCATAG-GTCATTCCCTGAGCATCCCCCCA----CTCttttttttttttttttttttttggacagtctcgctccattccctggtc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55793309 115 +  59248254 TTCCTGTTTCAAGGTCTCCTTATCCAACACAGCATAG-GTCATTCCCTGAGCATCCCCCCCGCCttttttttttttttttttttttttttGGACagtctcgctccattccctggtc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47900482  95 +  51301725 TTCCTGTTTCAAGGTCTCCTTATCCAACCCAGCACAG-GTCATTCCCTGagccccctcccc--------------------tttttttttggacagtctcGCTCCATTCcctggtc
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e calJac3.chr22_GL285922_random     10168   0 +    138250 C
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=121095.000000
s hg38.chr19_GL949751v2_alt        921890 56 +   1002683 tggagtgcagtggtgtgacctcggcttactgcagcctctgcctcccaagttcaagc
s panTro4.chr19                  59917402 56 +  63644993 tggagtgcagtggtgtgacctcggcttattgcagcctctgcctccgaagttcaagc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56814618 56 +  60714840 tggagtgcagtggtgtgatctcagcttactgcagcctctgcctcccaagttcaagc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103358318 56 - 106955855 tggagtgcagtggtgtgatctcggcttcctgcagcctcttcctcccaagttcaagc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60652550 56 +  64156825 tggagtgcagtggcgtgatctcggctcactgtaacctccgcctcccaagttcaagc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55793424 56 +  59248254 tgaagtgcagtggcgtgatctcggctcactgcaacctccgcctcccaagttcaagc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47900577 56 +  51301725 tggagtgcagtggcgtgatctcggctcactgcaacctccgcctcccaagttcaagc
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     10168 50 +    138250 tggagcgcagtggtgtgatttcaactcactgcaacctccgcctcccaggt------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I
e chlSab2.chr6                   47604930 304 +  50890351 I

a score=1040625.000000
s hg38.chr19_GL949751v2_alt        921946 442 +   1002683 aattctgcct--caggctcccggataatttttgcatttttagtagagaca-gggtttcaccgcgctggccaggctggtctcgaacccctaacctcaagcgatctgcctgcctcggtctcccaaagtgctgggattacagacataagctaccgtgcccggccTCCAGAGCATCTTTATTCTCAGTTTCAGCGGGAAGAAGGGGGAAGGTTGGTAAAAAGAGAGGCACAAAGTTTAAAAAGGACATTGCGTGAAGAAACTAaaggtttctccttctccacactattgaca-tttgggatcggatcactactcgttgggaaac---gtcctgtacatttccagggtgttcggcaccatccctagcctctaccccctagataccagctcacatcctcacagttaacagtgatcaaaaatgtctctgggcagtagaaaatatttcctgaaatgc
s panTro4.chr19                  59917458 441 +  63644993 aattctgcct--caggctcccggataatttttgcatttttagtagagaca-gggtttcaccgtgctggccaggctggtctcgaacccctaacctcaagcgatctgcctgcctcggtctcccaaagtgctgggattacagacataagctaccgtgcccggccTCCAGAGCATCTTTATTCTCAGTTTCAGCGGGAAGAAGGGAGAAGGTTGGT-AAAAGAGAGGCACAAAGTTTAAAAAGGACATTGCGTGAAGAAACTAaaggtttctccttctccacactattgaca-tttgggatcggatcactactcgttgggaaac---gtcctgtacatttccagggtgttcggcaccatccctagcctctaccccctagataccagctcacatcctcacagttaacagtgatcaaaaatgtctctgggcagtggaaaatatttcctgaaatgc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56814674 439 +  60714840 aattctgcct--cagccttccggataatttttgcatttttagtagagaca-gggtttcaccgtgttggccaggctggtcttgaacccctaacctcaagcgatcctcctgcctcggtctcccaaagtgctgggattacacacataagctaccgtgcccggccTCCAGAGCATCTTTATTCTCAGTTTCAGCGGGAAGAAGGGGGAAAGTTGGT-AAAAGAGAGGCACAAAGTTTGAAAAGGACGTTGCATGAAGAAACGAaaggtttctcattctccacactattgaca-tttggggtcagatcactacttgttgggaaacatggtcctgtacatttacagggtgtttggcaccatccctagcctctaccccctagataccag----catcctcacagtt-atgatgaccaaaaatgtctctgggcattagaatatatttcctgaaatgc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103358374 439 - 106955855 aattctgcct--caggctcctggataatttttgcatttttagtagagaca-aggtttcaccgtgttggccaggctggtcttgaacccctaacctcaagcgatccgcctgcctcagtctcccaaaatgctgggattacagacataagctaccgtgcccgaccTCCAGAGCATCTTTATTCTCAGTTTCAGCGGGAAGAAGGGGGAAAGGTGGT-AAAAGAGAGGCATAAAGTTTAAAAAGGACATTGCATGAAGAAACTAaaggtttctcattctccacactattgaca-tttggggtgagatcactgcttggtgggaagcatggtcctgtacatttacacggcgcctggcaccatccccagcctccaccccctggatgccag----catccccccagtg-atgatgatcaaaaacgtctctgggctgtagaaaatacttcctgaaatgc
i nomLeu3.chr10                 C 0 I 115
s rheMac3.chr19                  60652606 421 +  64156825 aattctgccccacacactcccggcaaatttttacatttttagt--agaca-ggatttcaccatgttggccaggctggtcttgaa---ctgacctcaagtgatccacctgcctcagcctcccaaagtgctggaattacagaaataagctaccgtgcccggccTCCAGAGCATCTTTATTCTCAGGTTCACTGGGAGGAAGGGGCGAAGTTGGT-AAAAGAGAGGCACAGAGTTTTAAAAGGAC-------------ACTAaaggtttctcattctccacactattgaca-tttggggtcagatcactacttgttaggaaacatggtcctctacatttacagtatgtttggcagcatccctagcctctacccactagataccag----catcct--cagtt-atgacgatcaaaaatgtctctgggcattagaaaatatttgctgaaatgc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55793480 423 +  59248254 aattctgccccacacactcccggcaaatttttacatttttagt--agaca-ggatttcaccatgttggccaggctggtcttgaa---ctgacctcaagtgatccacctgcctcagcctcccaaagtgctggaattacagaaataagctacagtgcccggccTCCAGAGCATCTTTATTCTCAGGTTCACTGGGAGGAAGGGGCGAAGTTGGT-AAAAGAGAGGCACAGAGTTTTAAAAGGAC-------------ACTAaaggtttctcattctccacactattgaca-tttggggtcagatcactacttgttaggaaacatggtcctctacatttacagtatgtttggcagcatccctagcctctacccactagataccag----catcctcacagtt-atgacgatcaaaaatgtctctgggcattagaaaatatttgctgaaatgc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47900633 425 +  51301725 aattctgccc--cagactcctggcaaatttttgcatttttagt--agacaggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattacagaaataaGCTACCGGGCCCGGCCTCCAGAGCATCTTTATTCTCAGGTTCACTGGGAGGAAGGGGGAAAGTTGAC-AAAAGAGAGGCACAGAGTTTTAAAAGGAC-------------ACTAAAGGTTTCTCATTCTccacactattgaca-tttggggtcAGATCACTACTTGTTAGGAAACATGGTCCTCTACATTTACAGTATGTTTGGCAGCATCCctagcctctacccactagataccag----CATCCTCACAGTC-ACGATGATCAAAAATGTCTCTggacattagaaaatatttactgaaatgc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47605234 423 +  50890351 aaTTCTGCCC--CAGactcccggcaaatttttgcatttttagt--agacaggggtttcaccatgttggccaggctggtcttgaactcctgacgtcaagtgatccacctgcctcagtctccgaaagtgctgggattacagaaataaactactgtgcccagGCTCCAGAGCATCTTTATTCTCAGGTTCACCGGGAGGAAGGGGGGAAGTTGGT-AAAAGAGAGGCACAGAGTTTTAAAAGGAC-------------ACTAaaggtttctccttctccacactattgaca-tttggggtcagatcactacttgttaggaaacatggtcctctacatttacagggtgtttggcagcatccctagcctctacccactagataccag----catcctcacagtt-acgacgatcaaaaatg--tctgggcattagaaaatattcactgaaaggc
i chlSab2.chr6                  I 304 C 0
s calJac3.chr22_GL285922_random     10218 346 +    138250 ---------------------------------------------------------------------------------------------ttaagcaatccacctgcctcagcctccccaagtgctggaatgacggacatgagctatcgcgcctggcCTCCAGAGCATCTTTATTCTCAGGTTCGGCAGGAGGAAGGGGGAAAGTTGGT-GAA--AGAGGCATGCAGTTTAAAAGGGACATTGCGTGAAGAAACc-aaggtttcttattgtccacactgttaacgttttgaggctagatcactgcttgctggttaacatggtcctgtacgttgataggg-gtttggcaccatccctagcctccactgaccagaggccag----catcctcacagct-atgatgaccaaaagtgtctctgagaattagaaaatacttcctgaaatgc
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I

a score=142638.000000
s hg38.chr19_GL949751v2_alt        922388 45 +   1002683 aaagttttcttaggttgagaaccattgTAATCTAGCCCCATCTTT
s panTro4.chr19                  59917899 45 +  63644993 aaagttttcttaggttgagaaccattgTAATCTAGCCCCATCTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815113 45 +  60714840 aaagttttcttaggttgagaaccattgTAATCTAGCCCCATCTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103358928 45 - 106955855 GAAGTTTTCTTAGGTTGAGAGCCATTGTAATCTAGCCCCATCTTT
i nomLeu3.chr10                 I 115 C 0
s rheMac3.chr19                  60653027 45 +  64156825 aaaattttcttaggttgagaaccattgTAATCTAGCCCCATCTTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55793903 45 +  59248254 aaaattttcttaggttgagaaccattgTAATCTAGCCCCATCTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47901058 45 +  51301725 AACATTTTCTTAGGTTGAGAACCATTGTAATCTAGCCCCATCTTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47605657 45 +  50890351 aaaattttcttaggttgagaaccattgTAATCTAGCCCCATCTTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     10564 45 +    138250 aaaatttccttaggttgtgaaccattgTGATCTAGCCCCATCTTT
i calJac3.chr22_GL285922_random C 0 I 288
e canFam3.chr1                   20065152 1307 - 122678785 I

a score=800544.000000
s hg38.chr19_GL949751v2_alt        922433 349 +   1002683 AGAGAAG-AAATTGAGTAACGGATCTACATCCATTGAGGAAC--TATCGACACCCCAGGGGCCCATGAAATGTAAACTCGCACTCACAATTAACCATCTTTCTCCAACGTGTGTATTTCATGTAGCCACACTCTCAGATGCCCACCCCCATGACCTACAAGTCCTAAACAGGGAAACCTGTGGCACATGGGTTC----ATGTGTGTCTGAATCTATA--CGTTCAGAGATGAACAAGTACTGCTCTCCCTA----------------TACCTGTGACCACTCGCCTCCGCCCATCACTGAATTCTGAAAATGTGGCCTCAGGCTCACAGCAGCATTAGCACTTGCTTGCTCTGGATCTCATCACATTGATGATC
s panTro4.chr19                  59917944 350 +  63644993 AGAGAAGAAAATTGAGTAACGGATCTACATCCATTGAGGAAC--TATGGACACCCCAGGGGCCCATGAAATGTAAACTCGCACTCACAATTAACCATCTTTCTCCAACGTGTGTATTTCATGTAGCCACACTCTCAGATGCCCACCCCCATTACCTACAAGTCCTAAACAGGGAAACCTGTGGCACATGGGTTC----ATGTGTGTCTGAATCTATA--CGTTCAGAGATGAACAAGTACTGCTCTCCCTA----------------TACCTGTGACCGCTCGCCTCCGCCCATCACTGAATTCTGAAAATGTGGCCTCAGGCTCACAGCAGCATTAGCACTTGCTTGCTCTGGATCTCATCACATTGATGATC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815158 364 +  60714840 AGAGAAG-AAATTGAGTAACGTATCTACATACATTTAGGAAC--TATTGACACCCTAGGGGCCCATAAAATGTAAACTTGTACTCATAATTAACCATCTTTCTCCAACGTGTGTATTTCATCTAGCCATACTCTCAGATGCCCACCCTCATGACCTA-AAGTCCTAAACAGTGAAACCTGTGGCACATGGGCTC----ATGTGTGTCTGAATCTATA--TGTTCAGAGATGAACAAGTACCGCTGTCCCTGTTTTCTTGCACCTCCTTACCTGTGACCACTCACCTCCGCCCATCACTGAATTCTGAAAATGTGGCCTCAGGCTCACAGCAGCTTTAGCACTTGCTTGCTCTGGATCTCATCACATTGATGATC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103358973 362 - 106955855 AGAGAAG-AAATTGAGTAAC--ATCTACATCCATTTAGGAAC--TATTGACACCCCAGGGGCCCATAAAATGTAAACTTGCACTCATAATTCACCATCTTTCTCCAATGTGTGTGTTTCATCTAGCCATACTCTCAGATGCCTACCCTCATGACCGACAAGTCCTAAACAGTGAAACCTGTGGCACGTGGTTTC-----TGTGTGTCTGAATCTGTA--TGTTCAGAGATGAACAAGTACTGCTGTCCCTATTTTCTTGCACCTCCTTACCTGTGACCACTCGCCTCCGCCCATCACTGAATTCTGAAAGTGTGGCCTCAGGCTCACAGCAGCATTAGCGTCTGCTTGCTCTGGATCTTATCACACTGATGATC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60653072 317 +  64156825 ACAGAAG-AAATTGAGTAATGTATCCACATCCATTTAGGAACTGTATTGATACCCCAGGGGCCCATAAAATGTAAACTTGCACTCATAATTAACCATCTTTCTCCAATGTGTGTACTTCATCTAGCCAAGCTCTCAGATGCCTACCCTCATGACCTACAAGTACTAAACAGTGAAACCTGTGGCACATGGGTTCGTTCATGTGTGTCTGAATCTAT----GTCCAGAGATGAACAAGTACTGCTGTCC--GTTTTCTTGCACCT---CACCTGTGACCACTCGCCTCTGCCCATCACTGAAT-----------------------------------------------TCTGGATCTCATCACATTGATGATC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55793948 317 +  59248254 ACAGAAG-AAATTGAGTAATGTATCCACATCCATTTAGGAACTGTATTGATACCCCAGGGGCCCATAAAATGTAAACTTGCACTCATAATTAACCATCTTTCTCCAACGTGTGTACTTCATCTAGCCAAGCTCTCAGATGCCTACCCTCATGACCTACAAGTACTAAACAGTGAAACCTGTGGCACATGGGTTCGTTCATGTGTGTCTGAATCTAT----GTCCAGAGATGAACAAGTACTGCTGTCC--GTTTTCTTGCACCT---CACCTGTGACCACTCGCCTCTGCCCATCACTGAAT-----------------------------------------------TCTGGATCTCATCACATTGATGATC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47901103 319 +  51301725 ACAGAAG-AAATTGAGTAATGTATCTACATCCGTTTAGGAACTGTATTGATACCCCAGGGGCCCATAAAATGTAAACTTGCACTCATAATTAACCATCTTTCTCCAACGTGTGTACTTCATCTAGCCAAGCTCTCAGATGCCTACCCTCATGACCTACAAGTACTAAACAGTGAAACCTGTGGCACATGGGTTCATTCATGTGTGTCTGAATCTAT----GTCCAGAGATGAACAAGTACTGCTGTCCCTGTTTCCTTGCACCT---CACCTGTGACCACTCGCCTCTGCCCATCACTGAAT-----------------------------------------------TCTGGATCTCATCACATTGATGATC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47605702 313 +  50890351 CCAGAAG-AAATTGAGTAATGTATCTACATCCGTTTAGGAACGGTATTGATACCCCAGGGGCCCATAAAATGTAAACTTGCACTCGTAATTAACCATCTTTCTCCAACGTGTGTACTTCATCTAGCCATGCTCTTAGATGCCTACCCTCACGACCTACAAGTAC------GTGAAATCTGTGGCACATGGGTTCGTTCATGTGTGTCTGAATCTAT----GTCCAGAGATGAACAAGTACCGCTGTCCCTGTTTTCTTGCACCT---CACCTGTGACCACTCGCCTCTGCCCATCACTGAAT-----------------------------------------------TCTGGATCTCATCACATTGATGATC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     10897 337 +    138250 aaggaag-aaaTTGAGTAATGTATGCACATTCGTTTAGGAACTGTATTGACACACCAGGGGTCCATAAAATGTAACCGTGCACTCATAATTGACCATCTTTCTCCAACGTGTGTATTTCATCTGGCC----------------GCCCTCATGACAGGTAAGTACTGAAAACTGAAA--TGGAGCACATGGG----------------TGAATCTGTAGGTGTTCAGAGGTGAACAAGTGCTGCTGTCT--TGTTTCTCACACCTCCTTACCTGTGACCGCCCACCTCTGCCCACCACTGAgttctgaaaatgtggcctcaggctcacagcagcattagcaCTTGCTTGCTCTCGATCTCCTCACATTGATGATC
i calJac3.chr22_GL285922_random I 288 I 316
e canFam3.chr1                   20065152 1307 - 122678785 I

a score=218854.000000
s hg38.chr19_GL949751v2_alt        922782 80 +   1002683 AAGAACAAAGTATTCACTGGGTTCTCTGCTAAGGATAC-AAAAAAAACCATTCCACAATTCCACGGCCATGTTTGCACCCA
s panTro4.chr19                  59918294 80 +  63644993 AAGAACAACGTATTCACTGGGTTCTCTGCTAAGGATCC-AAAAAAAACCATTCCACAATTCCACGGCCATGTTTGCACCCA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815522 80 +  60714840 AAGAACAAAGTATTCACTGGGTTCCCTGCTAAGGATAC-AAAAAAAACCATTCCACAATTCCATGGCCATGTTTGTACCCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103359335 80 - 106955855 GAGAAGAAAGCATTCACTGGGTTCTCTGCTAAGGATAC-AAAAAAAACCCTTCCACAGTTCCATGGCCATGTTTGCACCCA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60653389 79 +  64156825 AAGAACAAAG--TTCACTGGGTTCTCTGCTAAGGATACAAAAAAAAATCATTCCACAATTCCATGGCCATGTTTGCACCCG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55794265 79 +  59248254 AAGAACAAAG--TTCACTGGGTTCTCTGCTAAGGATACAAAAAAAAATCATTCCACAATTCCATGGCCATGTTTGCACCCG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47901422 78 +  51301725 AAGAATGAAG--TTCACTGGGTTCTCTGCTaaggatac-aaaaaaaatcattccacAATTCCATGGCCATGTTTGCACCCG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47606015 76 +  50890351 AAGAACGAAG--TTCACTGGGTTCT---CTAAGGATACAGAAAAAAATCATTCCACAATTCCATGGCCATGTTTGCACCCG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     11550 80 +    138250 aagaacaaaGTATTCACTGGGTTCTCTGATAAGGATAC-AAAAAAAATCATTCCACAGTCCCATGGCCGTGTTTGCACCCA
i calJac3.chr22_GL285922_random I 316 C 0
e canFam3.chr1                   20065152 1307 - 122678785 I

a score=194044.000000
s hg38.chr19_GL949751v2_alt        922862 68 +   1002683 GGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGCTTGGGA-AATGTTCCTGGAGC--AAAAAA-------AAGAGC
s panTro4.chr19                  59918374 70 +  63644993 GGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGCTTGGGA-AATGTT-CTGGAGC--AAAAAA----AATAAGAGC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815602 71 +  60714840 GGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGCTTGGGA-AATGTTCCTGGAGC--AAAAAA----AATAAGAGC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103359415 75 - 106955855 GGAACCACGAGGGCTGGGTTAGCCCAGATGATGGGCTCGGGA-AATGTTCCCGGAAC--AAAAAAAAACAATAAGAGC
i nomLeu3.chr10                 C 0 I 167
s rheMac3.chr19                  60653468 63 +  64156825 CGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGCTTGGGA-AGTGTTCTTGGAGC-------A-------AAAAGC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55794344 68 +  59248254 CGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGCTTGGGA-AGTGTTCCTGGAGC--AAAAAA-------AAAAGC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47901500 70 +  51301725 CGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGCTTGGGA-AGTGTTCctggagcaaaaaaaa-------aagagc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47606091 70 +  50890351 CGAACCACGAGGGCTGGGTTAGCCCAGATGGTGGGTTTGGGA-AGTGTTCCTGGAGCAAAAAAAA-------AAGAGC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     11630 69 +    138250 GAAACCACAAGGGCTGCGTTAGCCCAGGTGGTGGGTTTGGGCTAATGTT-CTGGAGC--AAAAAA------GCAGAAC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                  102786277 66 + 122678785 GGGATCACAGAGCCTGGCTCAGCCCAGATGGTGGGTTTGGGG-AGGGTCCCTGGAAG--GAAACA-------GAGG--
i canFam3.chr1                  n 1307 C 0

a score=32493.000000
s hg38.chr19_GL949751v2_alt        922930 10 +   1002683 CAGAAGTCAT
s panTro4.chr19                  59918444 10 +  63644993 CAGAGGTCAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815673 10 +  60714840 CAGAGGTCAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103359657 10 - 106955855 CAGAGGTCAT
i nomLeu3.chr10                 I 167 C 0
s rheMac3.chr19                  60653531 10 +  64156825 CAGAGGTCAT
i rheMac3.chr19                 C 0 I 113
s macFas5.chr19                  55794412 10 +  59248254 CAGAGGTCAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47901570 10 +  51301725 cagaggTCAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47606161 10 +  50890351 CAGAGGTCAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     11699 10 +    138250 CGGAGATCAT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                  102786343  9 + 122678785 -CTGGGTCAC
i canFam3.chr1                  C 0 C 0

a score=521908.000000
s hg38.chr19_GL949751v2_alt        922940 220 +   1002683 GAGAGCCTGACCCCCTCC----CCCAACGCG--------------------------------------CACACACACACACCACTCTCTACCTCCAAGCCTCATTTTCAGGCTT---------CTCAAAGCTAAGGTCACTCCCATGAGCTAAGCCGCGC---TTTTCTCAATCCTCAGCTCTTCCACAAGAATAGGAAGAACT------------------CTCTCCTGT-----TCAAGATCCTGTGGCTCAGCTGCAGCTCTGGAAGAAAGACCCCGGTGAGGGTC-TTGCTTT
s panTro4.chr19                  59918454 255 +  63644993 GAGAGCCTGACCCCCTCC----CCCAACGCGGGCGCGCGcacacacacacacacacacacacacacacacacacacacacacCACTCTCTACCTCCAAGCCACATTTTCAGGCTT------------AAAGCTAAGGTCACTCCCATGAGCTAAGCCGTGC---TTCTCTCAATCCTCAGCTCTTCCACAAGAATAGGAAGAACT------------------CTCTCCTGT-----TCAAAATCCTGTGGCTCAGCTGCAGCTCTGGAAGAAAGACCCCGGTGAGGGTC-TTTCTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815683 227 +  60714840 GAGAGCCTGATCCCTTCC----CCCAATGCG----------------------------------------CACACACACACCACTCTCTACCTCCAAGCCTCATTTTCAGGCTTTTCAGGCTTCTCAAAGCTAAGGTCACTCCCATGAGCTAAGCCGCGC---TTCTCTCAATCCTCAGCTCTTCCACAAGAATAGGAAGAACT------------------CCCTCCTGT-----TCAAGATCCTCTGCCTCAGCTGCAGCTCTGGAAGAAAGACCCCAGTGAGGGTC-TTTCTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103359667 240 - 106955855 GAGAGTCTGACCCCCTCC----CCCAATGCG------------------CGcacacacacacacacacacacacacacacCCCACTCGCTACCTCCAAGCCTCATTTTCAGGCTT---------CTTAAAGCCAAGGTCACTCCCATGAGCTAAGCCGCGC---TTCTCTCAGTCCTCAGCTCTTCCACCAGAATACGAAGACCT------------------CTCTGCTGT-----TGAAGATCCTCTGGCTCAGCTGCAGCTCTGGAGGAAAGACCCCGGTGACGGTC-TTTCTTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60653654 214 +  64156825 GAGAGCCTGATCCCCTCC----CTCAACACA--------------------------------------CACACACACACACCACT--TTACATCCAAGTCTCATTTTCAGGCTT---------TTCAAAGCTAAGATCACTCCCATGAGCTACGCCCGGC---TTCTCTCAATCCTCAACTCTTCCACGAGAATAGGAAGAACT------------------CTCTGCTGT-----TCGAGATCCTCTGGCTCAGCCGCAGCTCTGGAAGAAAGACCTCAGTGAGGGT-----CTTT
i rheMac3.chr19                 I 113 C 0
s macFas5.chr19                  55794422 214 +  59248254 GAGAGCCTGATCCCCTCC----CTCAacaca--------------------------------------cacacacacacaccacT--TTACATCCAAGTCTCATTTTCAGGCTT---------TTCAAAGCTAAGGTCACTCCCATGAGCTACGCCCGGC---TTCTCTCAATCCTCAACTCTTCCACGAGAATAGGAAGAACT------------------CTCTGCTGT-----TCGAGATCCTCTGGCTCAGCCGCAGCTCTGGAAGAAAGACCTCAGTGAGGGT-----CTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47901580 208 +  51301725 GAGAGCCTGATcccctc----------aaaa--------------------------------------cacacacacacaccact--ctaCATCCAAGTCTCATTTTCAGGCTT---------CTCAAAGCTAAGGTCACTCCCATGAGCTACGCCCGGC---TTCTCTCAATCCTCAGCTCTTCCACGAGAACAGGAAGAACT------------------CTCTGCTGT-----TCGAGATCCTCTGGCTCAGCCGCAGCTCTGGAAGAAAGACCTCGGTGAGGGT-----CTTC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47606171 208 +  50890351 GAGAGCCTGATCCCCTCC----CTCA----A--------------------------------------CACACACACACACCACT--CTACATCCAAGTCTCATTTTCAGGCTT---------CTCAAAGCTAAGGTCACTCCCATGAGCTACGCCGGGC-----CTCTCAATTCTCAGCTCTTCCATGAGAATAGGAAGAACT------------------CTCTGCTGT-----TCGAGATCCTCTGGCTCAGCCGCAGCTCTGGAAGAAAGACCTCGGTGAGGGT-----CTTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     11709 217 +    138250 GAGAGCCTGACCCCCTCC----CACA----G--------------------------------------CACATACGCATACCACTCTCTACCTCCAAGCCTCATTTTCAGGCTT---------CTCAAAGCTAAGGTCAATCCCATGAGTTAAGGTGCAC---GTTGCTCAATCCACAGCTGTTCCACAAGAATAGAAAGAACT------------------CTCTCCTGT-----TCAAGACCCTCTGGCACAGCCACAGCTCTGGCAGACAGACTTCGGTGAGGGTCATCCATTT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                  102786352 224 + 122678785 AAGGTCCTCTCCACCCTCAGTTCCCAACTCA--------------------------------------GCCCCAAACACCCAGAT--GTCCCCCC-----------TCTGTCAA---------CCCAGAGCT--GCTGATCTCCATCCCCCCTGCCTGGTGGGTATTCCCTGTCCCCAGT----------GAGGAGGTGGGACTGGGACCCCTGGGGACAGACTCACCTGCCTGCACTGAGTCCCTGGAGCCCACACTCAGCCCTGGAAGAGAGTCCCTATGAGAGGT--TTGCCCT
i canFam3.chr1                  C 0 n 0

a score=199254.000000
s hg38.chr19_GL949751v2_alt        923160 65 +   1002683 TCACAATCCCCAATCCCAGACCACATCCTGTG-CCCCAAAACAACTTCCATGGTAACCACATCCTT
s panTro4.chr19                  59918709 66 +  63644993 TCACAATCCCCAATCCCAGACCACATCCTGTGCCCCCAAAACAACTTCCATGGTAACCACATCCTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56815910 65 +  60714840 TCACAATCCCCAATCCCAGACCACATCCTGTA-CCCCAAAACAACTTCCATGGTAACCACGTCCTT
i ponAbe2.chr19                 C 0 I 113
s nomLeu3.chr10                 103359907 65 - 106955855 TCACACTCCCCAATCCCAGACCACATCCTGCG-CCCCAAAACAACTTCCATGGTAACCACATCCTT
i nomLeu3.chr10                 C 0 I 109
s rheMac3.chr19                  60653868 65 +  64156825 TCACAATCCCCAATCGCAGATCACATCCTGTG-CCCCAAAACAACTTCCATGGTCACCACATCCTT
i rheMac3.chr19                 C 0 I 295
s macFas5.chr19                  55794636 65 +  59248254 TCACAATCCCCAATCGCAGATCACATCCTGTG-CCCCAAAACAACTTCCATGGTCACCACATCCTT
i macFas5.chr19                 C 0 I 97
s papAnu2.chr19                  47901788 65 +  51301725 TCACAATCCCCAATCGCAGATCACATCCTGTG-CCCCAAAACAACTTCCATGGTCACCACATCCTT
i papAnu2.chr19                 C 0 I 97
s chlSab2.chr6                   47606379 65 +  50890351 TCACAATCCCCAATCACAGATCACATCCTGTG-CCCGAAAACAACTTCCATGGTCACCACATCCTT
i chlSab2.chr6                  C 0 I 97
s calJac3.chr22_GL285922_random     11926 65 +    138250 TCACAATCCCCAATCCCAGACCACAGCCTGTG-CCCCAAAACAACTTCCATGGTAACCACATCCCT
i calJac3.chr22_GL285922_random C 0 I 25
e canFam3.chr1                  102786576  0 + 122678785 I

a score=-2973.000000
s hg38.chr19_GL949751v2_alt        923225  5 +   1002683 CAGGA---------------------------------------------
s panTro4.chr19                  59918775  5 +  63644993 CAGGA---------------------------------------------
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103360081  5 - 106955855 CAGGA---------------------------------------------
i nomLeu3.chr10                 I 109 C 0
s calJac3.chr22_GL285922_random     12016 50 +    138250 CAGGCTTCTCGAGGCTTCCCCTACTCACCCAGACAGAGCAGTGTAGATCA
i calJac3.chr22_GL285922_random I 25 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e ponAbe2.chr19                  56815975 113 +  60714840 I
e chlSab2.chr6                   47606444 97 +  50890351 I
e papAnu2.chr19                  47901853 97 +  51301725 I
e macFas5.chr19                  55794701 97 +  59248254 I
e rheMac3.chr19                  60653933 295 +  64156825 I

a score=10270.000000
s hg38.chr19_GL949751v2_alt        923230 14 +   1002683 AGTGAA-GTCAGGCA
s panTro4.chr19                  59918780 14 +  63644993 AGTGAA-GTCAGGCA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56816088 14 +  60714840 AGTGAA-GTCAGGCA
i ponAbe2.chr19                 I 113 C 0
s nomLeu3.chr10                 103360086 14 - 106955855 AGTGAA-GTCAGGCA
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     12066 15 +    138250 AGTAAATGTCATGCA
i calJac3.chr22_GL285922_random C 0 I 4
e canFam3.chr1                  102786576  0 + 122678785 I
e chlSab2.chr6                   47606444 97 +  50890351 I
e papAnu2.chr19                  47901853 97 +  51301725 I
e macFas5.chr19                  55794701 97 +  59248254 I
e rheMac3.chr19                  60653933 295 +  64156825 I

a score=531889.000000
s hg38.chr19_GL949751v2_alt        923244 261 +   1002683 GGAAGTCAAGTCAGAAGAC--GGAATGggctgggcatggtggatcgcacctgtaatcccagcactttgggaggcagaggcaggtggatcacatgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaataccaaaagtagccaggcttggtggtgcatgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttaaa--cccggaaggcggaggttgcaatgagccgagat
s panTro4.chr19                  59918794 263 +  63644993 GGAAGTCAAGTCAGAAGACAGGGAATGggctgggcatggtggatcgcacctgtaatcccagcactttgggaggcagaggcaggtggatcacatgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaagtagccaggcgtggtggtgcatgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttaaa--cccagaaggcggaggttgcaatgagccgagat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56816102 261 +  60714840 GGAAGTAAAGTCAGAAGAC--GGAGTGggctgggcatggtggatcgcacctgtaatcccagcacttcgggaggcagaggcaggtggatcacataaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcgcatgcctgtaatcccagctactctggaggctgaggcaggagaatcagttaaa--cttggaaggcagaggttgcaatgagccgagat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103360100 263 - 106955855 GAAATTAAAGTCAGAAGACAGGGAGTGggctgggcgtggtggatcgcacctgtaatcccagcattttgggaggcagaggcaggtggatcacgtgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaactagccaggcgtggtggcgcatgcctgtaatcccagctactctggaggctgaggcaggaggattgcttaaa--cccggaaggtggaggttgcaacgaaccgagat
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55794798 254 +  59248254 GCAAGTAAAGTCGGAAGAC--GGGGTGggctgggcacggtgaatcgcacctgtaatcccagcacttcgggaggcggaggcgggtgtatcacatgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaatcagtcgggcgtggtggcgcatgcctgtagtcccagctactctggaggctgaggcaggagaatcgcttaaa--cccgggaggtggaggttgcagtgag-------
i macFas5.chr19                 I 97 C 0
s papAnu2.chr19                  47901950 257 +  51301725 GCAAGTAAAGTCGGAAGACAGggagtgggctgggcacggtgaatcgcacctgtaatcccagcacttcgggaggtggaggcgggtgtatcacatgaggtcaggagttcaagaccagcctggccaacataatcaaaccctgtctctactaaaaatacaaaaatcagccaggcatgg-gacacatgcctgtagtcccagctactctggaggctgaggcgggagaatcgcttaaaaccccggaaggtggaggttgcagtgag-------
i papAnu2.chr19                 I 97 C 0
s chlSab2.chr6                   47606541 254 +  50890351 GCAAGTAAAGTCGGAAGAC--GGAGTGggctgggcatggtgaatcgcacctgtaatcccagcacttcgggaggtggaggtgggtgtatcacatgaggtcaggagttcaagaccagcctggccaacataatcaaaccctgtctctactaaaaatacaaaaatcagccgggcgtagtgacacacgcctgtagtcccagctactctggaggctgaggcaggagaatcgcctaaa--ccccggaggtggaggttgcagtgag-------
i chlSab2.chr6                  I 97 C 0
s calJac3.chr22_GL285922_random     12085 234 +    138250 GCAAGTAAAGGCAG-------GAAGTG-----------------cacacctgtaatcccagcactttgggaggtggaggcgggtggatcacatgaggtcaagagtttgagaccagcctggtcaacattgtgaa--cccatctctactaaaaatac---atttagctgagcatggtagtgcatgtctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaa--cctaggagatggaggctgcagtgagatgagat
i calJac3.chr22_GL285922_random I 4 I 858
e canFam3.chr1                  102786576   0 + 122678785 I
e rheMac3.chr19                  60653933 295 +  64156825 I

a score=130651.000000
s hg38.chr19_GL949751v2_alt        923505  83 +   1002683 cgcaccattgcactccagcccgggggacag------------------------------aAAAaaaaatgtagctgagcatggtagtgcacgtctgtgatctcagctacttg
s panTro4.chr19                  59919057  82 +  63644993 cgcaccattgcactccagcct-ggggacag------------------------------aAAAaaaaatgtagctgagcatggtagtgcacgtctgtgatctcagctacttg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56816363  82 +  60714840 cgcaccatcgcactccagcct-ggggacag------------------------------aAAAaaaaatgtagctgagcatggtagtgcacgtctgtaatctcatctacttg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103360363  84 - 106955855 cgcaccattgcactccagcct-ggggacagaa----------------------------aaaaaaaaatgtagctgagcatggtagtgcacgtctgtaatctcagctacttg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55795052 106 +  59248254 ----ccattgcactttagcctgggggacagaatgagactccgtctcaaaaaa---aaaagaaaaaaaaaTGtagctgagcatggtattgcacgtctgtaatctcggctacttg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47902207 109 +  51301725 ----ccattgcacttcagcctgggggacagaatgagactccatctcaaaaaaaataaagaaaaaaaaaatgtagctgagCATGGTAttgcacgtctgtaatctcagctacttg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47606795 109 +  50890351 ----ccattgcacttcagcctgggggacagaatgagactccatctcaaaaagaaaaagaaaaaaaaaaaTGtagctgagcatggtattgcacgtctgtaatctcagctacttg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e calJac3.chr22_GL285922_random     12319 858 +    138250 I
e rheMac3.chr19                  60653933 295 +  64156825 I

a score=1055079.000000
s hg38.chr19_GL949751v2_alt        923588 475 +   1002683 ggagtctgaggcaggagaatcacttgaacccaggcggtggaggttgcagtgagccaagattgtaatagtccaatgtgttcaccttgcccactgcctagacagagctgattcgtcaagaca-gggaatcgcaatagagaataattcatgcagagctggctctacgagagaccagagttttattattattcaaatcagtgtctcccagcattcaggaagcg-------tttttaaggataacttggtgggtgggtgggaagccagtgagccaggagtgctgtttggtcagggatgaaatcgtgggagccaaagctatcttcttgcac----tcagttcctgagtggaggccaaaagataagatgggccagtttattgatatgggtggtgccagctgatccatcaagtacagggtctgcaagtt-----aaacgctgatcttagaagcagtttagggagggtcacaatcttgtagcctccagctgcatgactcct
s panTro4.chr19                  59919139 473 +  63644993 ggagtctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccaagattgtaatcgtccaatgtgttcaccttgcccactgcctagacagagctgattcatcaagaca-gggaatcgcaatagagaataattcatgcagagctgtctctacgagagaccagagttttattattattcaaatcagtgtctcccagcattcaggaagag-------tttttaaggataatttggtgggtgggtgggaagccagtgagccaggagtgctgtttggtcagggatgaaatcatgggagccaaagctatcttcttgcac----tcagttcctgagtggaggccaaaagataagatgggccagtttattgatatgggtggtgccagctgatccatcaagtacagggtctgcaaatt-----aagcgctgatcttagaagcagtttagggagggtcacaatcttgtagcctccagctgcatgactc--
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56816445 477 +  60714840 ggagtctgaggcaggagaatcgcttgaacccagaaggcggaggttgcagtgagccaagattgtaattgtccaaggtgttcaccttgcccactgcctagacagagctgattcatcaagaca-gggaatcgcaatagagaataattcatgcagagctggctctatgagagaccagagttttattattattcaaatcagtgtctcccagcattcaggaagaagac----tttttaaggataacttggtgggtgggtgggaagtcagtgagccaggagtggtgattggtttgggatgaaatcatgggagccaaagctatcttcttgcac----tcagttcctgagtggacgccaaaagataagatgggccagtttattgatat-ggtggtcccagctgatccatcaagtacagggtctgcaaata-----aagcactgattatagaagcagtttagggagggtcacaatcttgtagcctccagatgcatgactcat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103360447 478 - 106955855 ggagtctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccaagattgtaatcgtccaaggtgttcaccttgcccactgcctagacagagctgattcatcaagaca-gggaatcgcaatagagaatagttcatgcagagctggctctacgagagaccagagctttattattattcaagtcagtgtctcccagcattcaggaagaagaa----tttttaaggataacttggtgggtgggtgggaagccagtgagccaggagtgctgattggtcagggatgaaatcatgggagccaaagctatcttcttgcac----tcagttcctgagtggaggccaaaagataagatgggccagtttattgatatgggtggtgccagctgatccatcaagtacagggtctgcaaatt-----aagcactgatcttagaggcagtttagggagggtcacaatcttgtagcctccagctgcatgactcct
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60654228 482 +  64156825 ggaggctgaggcaggagaatcgcttgaacccgggagggggaggttgccgtgagccaagattgtaatcacccaaggtgttcaccttgcccactgcctagacagagctgattcatcaggacaggggagttgcattaagaaataattcatgcagagctggctctacgaaagaccagagtt---ttattactcaaatccgtgtctcccagcattcaggtagaagag-ttgttttaagggataactt----ggtgggtgggaagcccgtgggctaggagtgctgattggtcagggatgaaataatgggagtcaaagctatcttctcgaactcagtcagttcctgagtggaggccaaaagataagatgggccagtttattgagatgggtggtgccagctgatccatccagtgcaggttctgcaaattatctcaagcacttaccttagaagcagtttagggagggtcacaatcttgtagcctccagctgcatg--tcct
i rheMac3.chr19                 I 295 C 0
s macFas5.chr19                  55795158 482 +  59248254 ggagtctgaggcaggagaatcgcttgaacccaggaggtggaggttgccgtgagccaagattgtaatcacccaaggtgttcaccttgcccactgcctagacagagctgattcatcaggacaggggagttgcattaagaaataattcatgcagagctggctctacgaaagaccagagtt---ttattactcaaatccgtgtctcccagcattcagggagaagag-ttgttttaagggataactt----ggtgggtgggaagcccgtgggctaggagtgctgattggtcagggatgaaataatgggagtcaaagctatcttctcgaactcagtcagttcctgagtggaggccaaaagataagatgggccagtttattgagatgggtggtgccagctgatccatccagtgcaggttctgcaaattatctcaagcacttaccttagaagcagtttagggagggtcacaatcttgtagcctccagctgcatg--tcct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47902316 482 +  51301725 ggagtctgaggcaggagaatcgcttgaacccaggaggtggaggttgccgtgagccaagattgtaatCACCCAAGgtgttcaccttgcccactgcctagacagagctgattcatCAGGACAGGGGAGTTGCATTAGAAAataattcatgcagagctggctctaccagagaccagagtt---ttattactcaaatccGTGTCTCCCAGCATTCAGGGAGAAGAG-ttttttttAGggataactt----ggtgggtgggAAGCCCGTGGGctaggagtgctgattggtcagggatgaaatAATGGGAGTCAAAGCTATCTTCTCGAACTCAGTCAGTTCCTGAGTGGAGGCCAAAAGATAAGATGGGCCAGTTTATTGAgatgggtggtgccagctgatccatcaagtgcaggttCTGCAAATTATCTCAAGCACTTACCTTAgaagcagtttagggagggtcacaATCttatagcctccagctgcatg--tcct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47606904 474 +  50890351 ggagtctgaggcaggagaatcgcttgaacccaggaggtggaggttgccgtgagccaagattgtaatcacccaaggtgttcaccttgcccactgcctagacagagctgattcctcaggacaggggagttgcattagaaaa----tcatgcagagctggctctacgagagaccagag--------ttactcaaatcagtgtctcccagcattcagggagaagagtttttttttagggataactt----ggtgggtgggaagcccgtgggctaggagtgctgattggtcagggatgaaataatgggagtcaaagctatcctctcgaactcagtcagttcctgagtggaggccaaaagataagatgggccagtttattgagatgggtggtgccagctgatccatccagtgcaggttctgcaaattatctcaagcacttaccttagaagcagtttagggagggtcacaatcttgtagcctccagctgcatg--tcct
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e calJac3.chr22_GL285922_random     12319 858 +    138250 I

a score=859576.000000
s hg38.chr19_GL949751v2_alt        924063 311 +   1002683 aagtcataatttctaatctcgtggctaatgttcgtcctacagggccaatctagtccccaggcaacaaagaggtgtgctttggaaaagggctatcatctttgtttaaacta-----t-------aagtttctcccaa----agttcagcctatgcccaggaatgaaaaaggacagcttggaggttagaagcaaaatggagtcagt-----taaatctctttcactgtctcagtcataattttggaaaggtggtttcaagctggcacaactgcactccaccctaggagacagagcgagaccctgtc------------aaa----aaaaaaaaaaaaaaacaagaaGTGA
s panTro4.chr19                  59919612 298 +  63644993 ------------------------ctaatgttcgtcctacagggccaatctagtccccaggcaacaaagaggtctgctttggaaaagggctatcgtctttctttaaactataaact-------aagtttctcccaa----agttcagcctatgcccaggaatgaaaaa-gacagcttggaggttagaagcaaaatggagtcagt-----taaatctctttcactgtctcagtcataattttggaaaggtggtttcaagctggcacaactgcactccaccctaggcgacagagcgagaccctgtca-----aaaaaaaaa----aaaaaaaaaaaaaaacaaGAAGTGA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56816922 317 +  60714840 aaatcataatttctaatctcgtggctactgttcat-ctacagagccaatctagtccccaggcaacaaagaggtctcctttggaaaaggactatcatctttgtttaaactataaact-------aagtttctcccaa----agttcagcctatgcccaggcatgaaaaaggacagcttggaggttagaagcaaaatggagtcagt-----taaatctctttcactgtctcagtcataattttggaaaggtggtttcaagctggcacaactgcactccaccctaggtgacagagcgagaccctgcc----------aaaaa----aaaaaaaaaaaaaaCCAAGAAGTGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103360925 308 - 106955855 aaatcataatttctaatctcgtggctaatgttcatcctacagagccaatctagtccccaggcaacaaagaggtctgctttggaaaagggctatcgtctttgtttaaactataaact-------aagtttctcccaa----agttcagcctatgcccaggaatgaaaaaagacagcttggaggttagaagcaaaatggagtcagt-----taaatctctttcactgtctcagtcataattttggaaaggtggtttcaagctggcacaactgcactccaccttaggcgacagaacgagaccctgtc------------aaa----aaaaaaaa--------aagaaGTGA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60654710 333 +  64156825 aaatcataatttctaatctcgtggctaatgttagtcctacagagccaatctagtccccaggcaacaaagaggtctgctttgggaaagggctatcgtctttgtttaaaccataaact-------aagtttctcccaa----agttcagcctacacccaggaatgaaaaaggacagcttggaggttacaagtaaaatggagtcagttaagataagtctctttcactgtctcagtcataattttgcaaaagtggtttcaAGCTGACACAactgcactccaccctgggcgacacagcgagaccctgtcaagaacaaaagaaca----aaaaaCAAAAAAAAACAAGAGGTGA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55795640 326 +  59248254 aaatcataatttctaatctcgtggctaatgttagtcctacagagccaatctagtccccaggcaacaaagaggtctgctttgggaaagggctatcgtctttgtttaaaccataaact-------aagtttctcccaa----agttcagcctacacccaggaatgaaaaaggacagcttggaggttacaagcaaaatggagtcagt-----taagtctctttccctg--tcagtcataattttgcaaaagtggtttcaagctgacacaactgcactccaccctgggcgacacagcgagaccctgtcaagaaaaaaagaaca----aaaaacaaaaaaaaTCAAGAGGTGA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47902798 332 +  51301725 aaatcataatttctaatctcgtggctaatgttagtcctacagagccaatctagtccccaggcaacaaagaggtctgctttgggaaagggctatcGTCTTTGTTTAAAccataaact-------aagtttctcccaa----agttcagcctacacccaggaatgaaaaaggacagcttggaggttacaAGCAAAATGAAGTCAGTTAAGTtaaatctctttcactgtctcagtcataattttgcaaaggtggtttcaagctgacacaactgcactccaccctgggcgacacagcgagaccctgtcaagaaaaaaagaaca----aaaaacaaaaaaaa-caagaggtGA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47607378 337 +  50890351 aaatcataatttctaatctcgtggctaatgttagtcctacagagccaatctagtccccaggcaacaaacaggtctgctttgggaaagggctatcgtctttgtttaaaccataaact-------aagtttctcccaa----agttcagcctacacccaggaatgaaaaaggacagcttggaggttacaagcaaaatggagtcagttaagttaaatctctttcactgtctcagtcataattttgcaaaggtggtttcaagctgacacaactgcactccaccctgggcgacacagtgagaccctgtcaagaaaaacaaaacaaaacaaaaaaaaacaaaaaCAAGCGGTGA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     13177 329 +    138250 aaaccatgatttctaatcttgtggcta---ctagtcctacagtggcaatacagtccccaggcaagaaagaggtctgcttcgggaaagggctattgtctttgtttaaactataaactgcaaacgaagtttctccccaagttagttcagcccacgcccaggaatgaaaaaggacagcttggagtttagaagcaaaatggagtcagttaaattaaatctctttcactgtctcagtcataattttgcaaaggtggtttcaAgatcacataactgcacttcagcctgggtgacagaaccagaccctgac------------cca----aaaaaaaaaaaaaaaaaaaAAGCGG
i calJac3.chr22_GL285922_random I 858 I 10
e canFam3.chr1                  102786576   0 + 122678785 I

a score=155058.000000
s hg38.chr19_GL949751v2_alt        924374 65 +   1002683 AGTCAAGATAGGAGGTAAATTCGGAAGACAGGAAGTGGTGGTAGAAGACAAGAAGTGAAGTCATA
s panTro4.chr19                  59919910 57 +  63644993 AGTCAAGAT---AGGTAAATTCGGAAGACAGGAAGTGGTGGTAG-----AAGAAGTGAAGTCATA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56817239 65 +  60714840 AGTCAAGATAGGAAGTAAAGTCCGAAGACAGGAAGTGGTGGTAGAAGACAAGAAGTGAGGTCATA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103361233 65 - 106955855 AGTCAAGATAGGAAGTAACATCGGAAGACAGGAAGTGCTGGTAGAAGACAAGAAGTGAGGTCATA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60655043 65 +  64156825 AGTCAAGATAGGAAGGAAAGTCGGAAGACACCAAGTGGAGGTAGAAGACTAGAAATGATGTCATA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55795966 65 +  59248254 AGTCAAGATAGGAAGGAAAGTCGGAAGACACCAAGTGGAGGTAGAAGACTAGAAATGATGTCATA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47903130 65 +  51301725 AGTCAAGATAGGAAGGAAAGTCGGAAGACACCAAGTAGAGGTAGAAGACTAGAAATGATGTCATA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47607715 65 +  50890351 AGTCAAGATAGGAAGTAAAGTCGGAAGACACCAAGTGGCGGTAGAAGACTGGAAATGAGGTCATG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     13516 65 +    138250 AATCAAGACAGGAAGTAAAGTCAGCAGACAGGAAGTGATGGGAGAAAACAGGAAGTGAGGTCGTA
i calJac3.chr22_GL285922_random I 10 T 75
e canFam3.chr1                  102786576  0 + 122678785 I

a score=1542446.000000
s hg38.chr19_GL949751v2_alt        924439 576 +   1002683 CAGGAAGTAAAGTCAGAAGACAGGAAGTGAAGTAAGAAGACAGGAAGTGGTTGTAGAAGACAGGAAGTGAGGTCATACAGGAAGT-AAAATCAGAAGACAGGAAGTGACGTCAAACCAGGATTTGCAGTC-GGAGGCAGGCAAGAAGTGAAATCAGAAGACGGGAAGTGGCTGAGGGGAAC--GTCTTTTCTCTCTCCTGCTCAGCCCGAAGTGAACAGGTAGCATCAGGTGTGCCATTTCAGTGACTGGGCACAGCCCAGGCACCCACATCTCTCTGCAGCGCCTATTCTTGGAACACCAGAGACCTCTACACTATTTTCTGTTGCTTTTTTCCTTCATTTTCAGAGATGAGA-TCCTGGATTGAATGAC------TACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTATCTTGTTCTTTAATTTTGGTGTTGTTTGTTATGACT-------TGTTAGCCGTCTAGCACTCATAGCTTTGCATTTCCACTCTGCATTACTTGTATTTTTATTATTTTGTGATATTCGTAATAAT---TTATTATAAAACTGTGTTATT--TTTGGATATTTTTAAGTTAAAATGCGATTTTTT
s panTro4.chr19                  59919967 582 +  63644993 CAGGAAGCAAAGTCAGATGACAGGAAGTGAAGTAAGAAGACAGGAAGTGGTTGTAGAAGACAGGAAGTGAGGTCATACAGGAAGT-AAAATCAGAAGACAGGAAGTGACATCAAACCAGGACTTGCAGTC-GGAGGCAGGCAAGAAGTGAAATCAGAAGACAGGAAGTGGCTGAGGGGAAC--GTCTTTTCTCTCTCCTGCTCAGCCCGAAGTGAACAGGTAGCATCAGGTGTGCCATTTCAGTGACTGGGCACAGCCCAGGCACTCACATCTCTGTGCAGTGCCTATTCTTGGAACACCAGAGACCTCTACACTATTTTCTGTTGCTTTTTTCCTTCATTTTCAGAGATGAGA-TCCTGAATTGAATGACTTGAATTACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTATCTTGTTCTTTAATTTTGGTGTTGTTTGTTATGACT-------TGTTAGCCGTCTAACACACATAGCTTTGCATTTCCACTCTGCATTACTTGtatttttattattttgtaatatttgtaataat---ttattataaaaCTGTGTTATT--TTGGGATATTTTTAAGTTAAAATGCGATTTTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56817304 557 +  60714840 CAGGAAGCAAAGTCAGAAGACAGGAAGTGAAGTA--------------------AGAAGACAGGAAGTGAGATCATACAGGAAGTAAAAATCAGAAGACAGGAAGTGACGTCAAACCAGGA-TTGCAGTC-GGAGGCAGGCAAGAAGTGAAATCAGAAGACAGGAAGTGGCTAAGGGGAAC--GTCTT-----TCTCCTGCTCAGCCCGAAGTGAACAGGTGGCATCAGGTGTGCCATTTGAGTGACTGGGCGCAGCTCAGGCACCCACATCTCCCTTCAGCGCCTATTCTTGGAACACCAGAGACCTCTACACTATTTTCTGTTGCTTTTTTCCTTCATTTTCGGAGATGAGA-TCCTGGATTGAATGACTTGAATTACTGTGGAAAGCGATTGACCAAGGTAAGTCACAACTATCTTGTTCTTTAATTTTGGTGTTGTTTGTTATGACT-------TGTTAGCCGTCTAGCACACATAGCTTTGCATTTCCACTCTGCATTACTTGtatttttattattttgtaatatttgtaataat---ttattataaaaCTGTGTGATT--TTTGGATATTTTTAAGTTAAAATGCGGTTTTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103361298 581 - 106955855 CAGGAAGCAAAGTCAGAAGACAGGAAGTGAAGTA---AGACAGGAAGTGGTTGTAGAAGACAGGAAGTGAGGTCATACATCAAGT-AAAATCAGAAGACAGGAAGTGACGTCAAACCAGGACTTGCAGTC-GGAGGCAGGCAAGAAGTGAAATCAGAAGACAGGAAGTGGCTGAGGGGAAC--GTCTTTTCTCTCTCCTGCTCAGCCTGAAGTGAACAGGTAGCATCAGGTGTGCCATTTGAGTGACTGGGCACAGCTCAGGCACCCACATCTCCCTCCAGCGCCTATTCTTGGAACACCAGAGACCTCTACACTATTTTCTGTTGCTTTTTTCCTTCATTTTCAGAGATGATA-TCCTGGATTGAATGATTTGAATTACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTATCTTGTTCTTTAATTTTGGTGTTGTTTGTTATGACT-------TATTAGCCGTCTAGCACACATAGCTTTGTATTTCCACTCTGCattacttgtatttttattattttgtaatatttgtaataatttattattatAAAACTGTGTTATT--TT-GGATATTTTTAAGTTAAAATGCGATTTTTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60655108 576 +  64156825 TAGGAAGTAAAGTCAGAAGACAGGAAGTGAAG--------------------GTAGAAGACAGGAAGTGAGGTCATACAGGAGGC-AAAGTCAGAAGACAGGAAGTGATGTCAACCCAGGAAGTGCAGTC-GAAGGTAAGCAAGAAGTGAAGTCAGGAGACAGAAAGTGGCCGGGAGGAACTTGTCTTTCCCCTCTCCTCCGAAGCCCCAAGTGAACAGGTAGCGTCAGGTGTGCCCTTTGAGTGACTGGGCACAGCTCAGGCACCCACATCTCCCTCCAGCGCCTATTCTTTGAACACCAGAGACCTCTGCACTATTTTCTGTTGTTTTTTTCCTTCATTTTCCGAGACGAGG-TCCTGGATTGAGTGGCTTGAATTACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTATCTTGTTCTTTAATTTTGTTGTTGTTTGTTATGACTAATTGAATGTTAGCCTTCTAGCACACATAGCTTTGCATTTCCACTCTGCACTACTTGTATTTTTATTATTTTGTAGTATTTGTAATACTTTGTTATTTTAAAACTGTGTTATTAGTTTGGATATTTTGAAGTTAAAATGTGATTTTTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55796031 576 +  59248254 TAGGAAGTAAAGTCAGAAGACAGGAAGTGAAG--------------------GTAGAAGACAGGAAGTGAGGTCATACAGGAGGC-AAAGTCAGAAGACAGGAAGTGATGTCAACCCAGGAAGTGCAGTC-GAAGGTAAGCAAGAAGTGAAGTCAGGAGACAGAAAGTGGCCGGGAGGAACTTGTCTTTCCCCTCTCCTCCGAAGCCCCAAGTGAACAGGTAGCGTCAGGTGTGCCCTTTGAGTGACTGGGCACAGCTCAGGCACCCACATCTCCCTCCAGCGCCTATTCTTTGAACACCAGAGACCTCTGCACTATTTTCTGTTGTTTTTTTCCTTCATTTTCCGAGACGAGG-TCCTGGATTGAGTGGCTTGAATTACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTGTCTTGTTCTTTAATTTTGTTGTTGTTTGTTATGACTAATTGAATGTTAGCCTTCTAGCACACATAGCTTTGCATTTCCACTCTGCACTACTTGTATTTTTATTATTTTGTAGTATTTGTAATAATTTGTTATTTTAAAACTGTGTTATTAGTTTGGATATTTTGAAGTTAAAATGTGATTTTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47903195 574 +  51301725 TAGGAAGTAAAGTCAGAAGACAGGAAGTGAAG--------------------GTAGAAGACAGGAAGTGAGGTCATACAGGAGGC-AAAGTCAGAAGACAGGAAGTGATGTCAATCCAGGAAGTGCAGTC-GAAGGTAAGCAAGAAGTGAAGTCAGGAGACAGAAAGTGGCCGGGAGGAACTTGTCTTTCCCCTCTCCTCCGAAGCCCCAAGTGAACAGGTAGCGTCAGGTGTGCCCTTTGAGTGACTGGGCACAGCTCAGGCACCCACATCTCCCTCCAGCGCCTATTCTTTGAACACCAGAGACCTCTGCactattttctgttgcttttttccttcattttccgaGATGAGG-TCCTAGCTTGAATGGCTTGAATTACCATGGAAAGTGATTGACCAAGGTAAGTCACAACTATCTTgttctttaattttgttgttgtttgttatgACTAATTGAATGTTAGCCTTCTAGCACACATAGCTTTGCATTTCCACTCTGCActacttgtatttttattattttgtagtatttgtaataatttgttattttaaaac--tgttattagtttgGATATTTTGAAGTTAAAATGCGATTTTTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47607780 576 +  50890351 CAGGAAGTAAAGTCAGAAGACAGGAAGTGAAG--------------------GTAGAAGACAGGAAGTAAGGTCATACAGGAGGC-AAAGTCAGAAGACAGGAAGTGATGTCAATCCAGGAAGTGCAGTC-GAAGGTAGGCAAGAAGTGAAGTCAGGAGACAGAAAGTGGCCCGGAGGAACTTGTCTTTCCCCTCTCCTCTGAAGCCCCAAGTGAACAGGTAGCGTCAGGTGTGCCCTTTGAGTAACTGGGCACAGCTCAGGCACCCACATCTCCCTCCAGCGCCTATTCTTTGAGCACCAGAGACCTCTGCACTATTTTCTGTTGCTTTTTTCCTTCATTTTCCGAGATGAGG-TCCTGGATTGAATGGCTTGAATTACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTATCTTGTTCTTTAATTCCGTTGTTGTTTGTTATGACTAATTGAATGTTAGCCTTCTAGCACACATAGCTTTGCATTTCCACTCTGCACTACTTGTATTTTTATTATTTTGTAGTATTTGTAATAATTTGTTATTTTAAAACTGTGTTATTAGTTTGGATATTTTGAAGTTGAAATGCGATTTTTT
i chlSab2.chr6                  C 0 I 982
s calJac3.chr22_GL285922_random     13506 574 +    138250 CAGGAAGTGAAATC--AAGACAGGAAGTAAAGTCAGCAGACAGGAAGTGATGGGAGAAAACAGGAAGTGAGGTCGTACAGGTAGT-AAAGTCTGCAGACAGGAAGTGACGTTTACACCGGAAGTATTGTCAGAGGGCAGGCAGGAAGTGAAGTCAGAAGCCAAGAAGTGGCCAGGGAGAACTTGTCTTTCCCCTCTCCTCCTCAGCCCCAAGTGAAAAGGTAGCATCAGGTGTGCCATTTGAGTGACTGGACACAGCTCAGGCATCCACATCTCCCTTCAGC-------------CCATCAGAGACCTCTCCACTACCTTCTTTTGCTTTTTTCCTTCA-CTTCAGAGATGAAATTCCCAGATTGAACGGCTTCAATTACTATGGAAAGTGATTGACCAAGGTAAGTCACAACTACCTTGTTTTTTAATTATGTT----TTTGTTGTGACTAATTGAGTTTTAGCCTTTTAGCACACATAGCTTTGCATTTCCACTCTGCAGTACTTGCATTTTTATTACTTTGTAATGTTTGTAATGTG---TTATTATAAAGCTGTGTTATTGGTTTGG-CATTTTGAAGTTAAAATGTAATTTTTA
i calJac3.chr22_GL285922_random T 75 C 0
e canFam3.chr1                  102786576   0 + 122678785 I

a score=9821.000000
s hg38.chr19_GL949751v2_alt        925015 6 +   1002683 AACTAA---
s panTro4.chr19                  59920549 6 +  63644993 AACTAA---
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56817861 6 +  60714840 AACTAA---
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103361879 6 - 106955855 AACTAA---
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60655684 6 +  64156825 AACTAA---
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55796607 6 +  59248254 AACTAA---
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47903769 6 +  51301725 AACTAA---
i papAnu2.chr19                 C 0 I 1798
s calJac3.chr22_GL285922_random     14080 9 +    138250 AACTGCAAA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576 0 + 122678785 I
e chlSab2.chr6                   47608356 982 +  50890351 I

a score=3893.000000
s hg38.chr19_GL949751v2_alt        925021 2 +   1002683 GT
s panTro4.chr19                  59920555 2 +  63644993 GT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56817867 2 +  60714840 GT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103361885 2 - 106955855 GC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60655690 2 +  64156825 GT
i rheMac3.chr19                 C 0 I 845
s macFas5.chr19                  55796613 2 +  59248254 GT
i macFas5.chr19                 C 0 I 976
s papAnu2.chr19                  47905573 2 +  51301725 GC
i papAnu2.chr19                 I 1798 C 0
s calJac3.chr22_GL285922_random     14089 2 +    138250 GT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576 0 + 122678785 I
e chlSab2.chr6                   47608356 982 +  50890351 I

a score=781.000000
s hg38.chr19_GL949751v2_alt        925023 1 +   1002683 G
s panTro4.chr19                  59920557 1 +  63644993 G
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56817869 1 +  60714840 G
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103361887 1 - 106955855 G
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55797591 1 +  59248254 A
i macFas5.chr19                 I 976 C 0
s papAnu2.chr19                  47905575 1 +  51301725 A
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     14091 1 +    138250 G
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576 0 + 122678785 I
e chlSab2.chr6                   47608356 982 +  50890351 I
e rheMac3.chr19                  60655692 845 +  64156825 I

a score=472153.000000
s hg38.chr19_GL949751v2_alt        925024 162 +   1002683 GCAGTATGCAAAGCAAGTGGTTCAGAACTC-TCCCCCATTAATAAGTCTTCTCTCCTGAAAGAAACAATTTTGAGACTTCCTGTTCTTAATTCTGTTTAACAGCATACTTCTAAAAG-AAAAAGTGTATACTGTTATTATTTATTGTGTTACAAAAATATACAC
s panTro4.chr19                  59920558 162 +  63644993 GCAGTATGCAAAGCAAGTGTTTCAGAACTC-TCCCCCATCAATACGTCTTCTCTCCTGAAAGAAACAATTTTGAGACTTCCTGTTCTTAATTCTGTTTAACAGCATACTTCTAAAAG-AAAAAGTGTATACTGTTATTATTTATTGTGTTACAAAAATATACAC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56817870 157 +  60714840 GCAGTATGCAAAGCAAGTGTTTCAGAACTCTTCCCCCATCAATAAGTCTTCTCTCCTGAAGGAAACAATTTTGAGACTTCCTGTTCTGAATTCTGTTTAACAGCATACTTCT-------AAAAGTGTATACTGTTATTATTTATTGTGTTACAAAAATATACAC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103361888 162 - 106955855 GCAGTATGCAAAGCAAGTGTTTCAGAAGTC--TCCCCATCAATAAATTTTCTCTCCTGAAGGAAACAATTTTGAAACTTCCTGTTCTTAATTCTGTGTAACAGCATACTTCTAAAAGAAAAAAGTGTATACTGTCATTATTTATTGTGTTACAAAAATATACAC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60656537 162 +  64156825 GCAGTATGCAAAGCAGGTGTTTCAGAACTC-TCTCCCGTCAGTAAGTCTTCTCTCCTGAAGGAAACAATTTTGAGACTTCCTGTTCTTAATTCTGTTTAACAGCATACGTCTAAAAG-AAAAGATGTATACTGTTATTAtttattgtgttacaaaaatatacac
i rheMac3.chr19                 I 845 C 0
s macFas5.chr19                  55797592 162 +  59248254 GCAGTATGCAAAGCAGGTGTTTCAGAACTC-TCTCCCGTCAGTAAGTCTTCTCTCCTGAAGGAAACAATTTTGAGACTTCCTGTTCTTAATTCTGTTTAACAGCATACGTCTAAAAG-AAAAGATGTATACTGTTATTAtttattgtgttacaaaaatatacac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47905576 162 +  51301725 GCAGTATGCAAAGCAGGTGTTTCAGAACTC-TCTCCCATCAGTAAATCTTCTCTCCTGAAGGAAACAATTTTGAGACTTCCTGTTCTTAATTCTGTTTAACAGCatacttctaaaag-aaaagatgtatactattattatttattgtgttataaaaatatacac
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47609338 162 +  50890351 GCAGTATGCAAAGCAGGTGTTTCAGAACTC-TCTCCCATCAGTAAGTCTTCTCTCCTGAAGGAAACAATTTTGAGACTGCCTGTTCTTAATTCTGTTTAACAGCATACGTCTTAAAG-AAAAGATGTATACTGTTATTAtttattgtgttacaaaaatatacac
i chlSab2.chr6                  I 982 C 0
s calJac3.chr22_GL285922_random     14092 162 +    138250 GCAGTATGCAAAGCAAGTGTTTGAGAACTT-TCCCCCATCAATAAGTCTTCTCCCCTAAAGGAAACAGTTTTGAAACTTCCTGTTCTTAATTCTGTTTAACAGCTTACTTCTAAAAG-AAAACGTGTATGCTGTTATTAtttattttgttacaaaaatatacat
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I

a score=845.000000
s hg38.chr19_GL949751v2_alt        925186 1 +   1002683 G
s panTro4.chr19                  59920720 1 +  63644993 G
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56818027 1 +  60714840 G
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103362050 1 - 106955855 G
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47905738 1 +  51301725 a
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47609500 1 +  50890351 g
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                  102786576 0 + 122678785 I
e calJac3.chr22_GL285922_random     14254 0 +    138250 C
e macFas5.chr19                  55797754 0 +  59248254 C
e rheMac3.chr19                  60656699 0 +  64156825 C

a score=4820.000000
s hg38.chr19_GL949751v2_alt        925187 5 +   1002683 CACCT
s panTro4.chr19                  59920721 5 +  63644993 CACCT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56818028 5 +  60714840 CACCT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103362051 5 - 106955855 CACCT
i nomLeu3.chr10                 C 0 C 0
s chlSab2.chr6                   47609501 5 +  50890351 cacct
i chlSab2.chr6                  C 0 I 422
e canFam3.chr1                  102786576 0 + 122678785 I
e calJac3.chr22_GL285922_random     14254 0 +    138250 C
e papAnu2.chr19                  47905739 0 +  51301725 C
e macFas5.chr19                  55797754 0 +  59248254 C
e rheMac3.chr19                  60656699 0 +  64156825 C

a score=177412.000000
s hg38.chr19_GL949751v2_alt        925192 340 +   1002683 Ttcatgcacgtccgtgtgaagagaccaccaaacaggctttgtgtgagcaataaagcttttaatcacctgggtgcaggtgggctgagtctgacaagagagtcagcgaagggggataggggtggggccgttttataggatgtgggtaggtaaaggaaaattacagtcaaaggggggttgttctctggcgggcagagtcggggtcataaggtgctcagtaggggagcttttgagccagga-tgagccaggagaaggaatttcacaagacaatgtcatcagttaaggcaggaacaggccattttcgcttcttttgtggtggaatgtcatcagttaaggcacgaac
s panTro4.chr19                  59920726 338 +  63644993 Ttcatgcacgtccgtgtgaagagaccaccaaacagactttgtgtgagcaataaagcttttaatcacctgggtgcaggtgggctgagtccgaaaagagagtcagcgaagggggac--gggtggggccattttataggatttgggtaggtaaaggaaaattacagtcaaaggggggttgttctctggcgggcagagtgggggtcataaggtgctcagtaggggagcttttgagccagga-tgagccaggagaaggaatttcacaagacaatgtcatcagttaaggcaggaacaggccattttcgctttttttgtggtggaatgtcgtcagttaaggcaggaac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56818033 339 +  60714840 Ttcatgcacgtccgtgtgaagagaccaccaaacaggctttgtgtgagcaataaagcttttaatcacctgggtgtaggcaggctgagtccgaaaagagagtcagcgaagggagat-ggggtggggccgttttatgggatttgggtaggtaaaggaaaattacagtcaaaggggggttgttctctggcgggcagagtgggggtcacaaggtgctcagtgggggagcttttgagccagga-tgagccaggagaaggaatttcacaagacaatgtcatcagttaaggcaggaacaggccattttcacttcttttgtggtggaatgtcatcagttaaggCAGGAAC
i ponAbe2.chr19                 C 0 I 48100
s nomLeu3.chr10                 103362056 337 - 106955855 Ttcatgcgcgtccgtgtgaagagaccaccaaacaggctttgtgtgggcaataaagcttttaatcacctgggtgcaggtgggctgagtccgaaaagagagtcatctaagggagat-ggggtggggccgttttataggatttgggtaggtaaaggaaaattacagtcaaaggggg---gttctctggcgggcagagtgggggtcacaaggtactcagtaggggagcttttgagccaggattgagccaggagaaggaatttcacaagacaatgtcatcagttaaggcaggaacaggccattttcacttcttttgtggtggaatgtcatcagttaaggcaggaac
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e calJac3.chr22_GL285922_random     14254   0 +    138250 C
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739   0 +  51301725 C
e macFas5.chr19                  55797754   0 +  59248254 C
e rheMac3.chr19                  60656699   0 +  64156825 C

a score=73474.000000
s hg38.chr19_GL949751v2_alt        925532 293 +   1002683 cggccatctggatgtgtacgtgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgacattcctgtcttcttatattaataagaaaaataaaatgaaataggggtaaagtgttgggacagcaaaaatttttggggg-tggtatggagagataatgggtgatgtttctcaaggctgctttgagcaggattaggggcggcgtgggaacctaaagtgggagcgattaagctgaaggaagattttgtggtaaggggtgacattgtgggattgttaaaagaaacattt
s panTro4.chr19                  59921064 294 +  63644993 cggccatctggttgtgtacgtgcaggccacaggggatatgatggcttagcttgggctcagaggcctgacattcctgtcttcttatattaataagaaaaataaaatgaaataggggtaaagtgttgggacagcgaaaatttttgggggatggtatggagagataatgggcgatgtttctcagggctgcttcgagcaggattaggggcggcgtgggaacctaaagtgggagcgattaagctgaaggaagattttgtggtaaggcgtgatattgtggggctgttagaagaaacattt
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103362393 291 - 106955855 cggccatctggatgtgtacttgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgacattcctgtcttcttatattaataagaaaaataaaacgaaatagtggtaaagtgttgggacggcaaaaattttgggcgg-tggtatggagagataatgggagatgtttctcagggcttcttcgagtgggattaggggcggcgtgcgaacct-gagtgggagcgattaagctgaaggaagattttgtggtaaggggtgatattgtgggactgtta-aagaaacattt
i nomLeu3.chr10                 C 0 I 100
e canFam3.chr1                  102786576   0 + 122678785 I
e ponAbe2.chr19                  56818372 48100 +  60714840 I
e calJac3.chr22_GL285922_random     14254   0 +    138250 C
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739   0 +  51301725 C
e macFas5.chr19                  55797754   0 +  59248254 C
e rheMac3.chr19                  60656699   0 +  64156825 C

a score=153925.000000
s hg38.chr19_GL949751v2_alt        925825 1768 +   1002683 gtcatttagaattattggtgatggcctggatacagttttgtatgaattgaaaaactaaagggaataaggaaaggagaaaaacaggtattaaaggtctaagaattgggacgactcaggacatctaattagaaagtgcctaaggaggttcagcatagccttgccagcaaagat-tatttatttattttaagagttaacagtggcggtatggggatagtaccaggagataccagctgtgctggcttggagaaacagtgtaaactggcagtgtaaacaagagcagggcatgtgtgagtagttgagaacggtgaataggagtatgactagacagaagatagtagggatgacaagttttttggggcacaatctaagtTggtctggtgtctggaatgagactggggcctaataaaaaggagtgtctacacaggagcttaaatgggctgtatcttgtagcattccaaggacaggcctgaattctggaagcgaaaatggtaaaagtattgtccagtcctttttaagttggtggctgagcttggtgaggtgtgtttttaatagaccattagtctgtcactgaatactaagagcctgaaaaaatgcttggctgatttgactaataaaggctggtctgttagcagactgtatagaggtgggaaggctgaactgaggaattttgtctgacagaagggaatgacaaggctaaactgaagaattatgtctgacagaagggaagaaatgactgcggtggccttctcagaccctgtaggaaaggactgtacttacccagtgaaagtgtctacctagactaagaggtattttagttatcttactcggggcatgttgagtaaagctaatttgccagtcctgggcgggggcaaatccttgagcttgatgtgtagggaagggagggggcctgaataatccatgaggagtagtagaatagctgatgcaacactgagaagtgatttctttgaggatagatttccacaatggaaaggaaatgagaggttctaagaggctggctagtggcttgtaCcatagcatagcctgcctttgctggtgtgtggcgattaggcctggtggaaccgccatcaataaactaagtgtgatcagggtgagaaacagggaagaaggaaatgtggggaaatggggtgaacgtcaggtggatcagagagatgcagtcatgggggtcaggtgtggtatctggaataatgtgggaggccagattgaagtccgggccaggaacaatggtaattgtgggacttaacaaagagtgagtacagctgaaggagccagggagcagaaagtatatgcatcaggtgtgagtaagaaaatagattttggaaattatgagagctgtagagagtgagttgagcatagtttgtgattttgagggcctctaaaagtattaaagcagcggcagccacagcacgcagatatgagggctaggctaaaacagtaaggtcaagttgtttggacagaaaggctacagggtgtggtcctggctcttgtgtaagagttctgaccgcgctaaccatgcctaggaaggaaaggagttgttgttttgtagaaggtgctggggcttgagagatcagtcagacacgatcagcagggagagcacgtgtgtttttatgagaattatgccgagataggtaacagatgaggatgaactttgggcttgactgaagtaatgggggctgtctgtgaaaccttgcagcagtacagcccaggtaatttgctgagcctaatgggtgtcagggtcagtccaagtgaa
s panTro4.chr19                  59921358 1753 +  63644993 gtcatttagaattattggtgatggcctggatgcagttttgtacgaattgaaaaactaaatggaataagagaaggtgaaaaacaggcattaaaagtctaagaattgggaggacctaggacatctaattagagagtgcctaaggaggttcagcatagtcctgccagcaaagatgtatttatttattttaagagttaagagtggcggtttggggatagtaccaggagatatcagctgtgctggcctggagaaa-------------cagtgtaaacaagagcagggcatgtgtgagtagttgataacagtgaataggagtatgactagacagaagataggagggatgacaagttttttggggcacagtctaagtTGGTTtggtgtctggaatgagactggggcctaataaaaaggagtgtctatacaggagcttaaatgggctgtatcttgtagcattccgaggacaggcctgaattctggaagcgaaaatggtaaaagtattgtccagtcctttttaagttggtggctgagcttggtgaggtgtgtttttaatagaccattagtctgtcactgaatactaagagcctgaaaaaatgcttggctgatttgactaataaaggctggtctgttatcagactgtatagaggtgggaaggctgaactgaggaattatgtctgacagaagggaatgacaaggctaaactgaagaattatgtctgacagaagggaagaaatgactgcggtggccttctcagaccccataggaaaggactgtacttatccagtgaaagtgtctacctagactaagaggtattttagttatcttactcgaggcatgttgagtaaagctaatttgccagtcctgggtgggggcaaatccttgagcttgatgtgtagggaagggagggggcctgaataatccctgaggagtagtagaatagcagatggaacactgagaagtgatttctttgacgatagatttccacgatggaaaggaaatgagaggttctaagaggcgggctagtggcttgtaCTatagcatagcctgcctttgctggtgtgtggcgattaggcctggtggaaccaccatcaataaatcaagcgtgatcagggtgagaaacagggaagaaggaaatgtggggaaatggggtgaatgtcaggtggatcagagagatatagtcatgggggtcaggtgtggtatctggaataatgtgggaggccagactgaggtccggggcaggaacagtggtaattgtgggacttaacaaagagtgagtacagctgaaggagccggggagcagaaagtatatgcgtcaggtgtgagtaagaaaatagattttggaaattatgagagctgtagagagtgagttgagcatagtttgtgattttgagagcctctaaaagtattaaagcaccggcagctgctgctcacagacatgagggctagcctaaaacagtaaggtcaagttgtttggacagaaaggctatagggtgtggtcctggcttttgtgtaagaattccgaccgcgctaaccatgcctaggaaggaaagga---gttgttttgtagaaggtgctggggtttgagagatcagtcagacacgatcagcagggagagcacgtgtgtttttatgagaattatgccaagataggtaacagatgaggatgaactttgggcttgactgaagtaatgggggctgtctgtgaagccttgcagcagtacagcccaggtaatttggtgagcttaaagggtgtcagggtcagtccaagtgaa
i panTro4.chr19                 C 0 I 10
e canFam3.chr1                  102786576    0 + 122678785 I
e ponAbe2.chr19                  56818372 48100 +  60714840 I
e calJac3.chr22_GL285922_random     14254    0 +    138250 C
e nomLeu3.chr10                 103362684  100 - 106955855 I
e chlSab2.chr6                   47609506  422 +  50890351 I
e papAnu2.chr19                  47905739    0 +  51301725 C
e macFas5.chr19                  55797754    0 +  59248254 C
e rheMac3.chr19                  60656699    0 +  64156825 C

a score=0.000000
s hg38.chr19_GL949751v2_alt        927593 913 +   1002683 agcgaagagaggctgggacgaggggtgcaggggaatagtgaaaaaagcatctttaagatcaagcatggaatagtgagttgtggaggaaggtattgaggacaaaagagtgtaggggttgggcaccacagggtgcataggcaaaacaatttgataaggcgcagatcctgaactaatctgtaagacttttccggtttttggacaggtaaaatgggggaattgtaaggagagtttataggttttagaagcccatgctatagcaggcgagtgataacaggctttaatccttttaaagtgtgctgtgggatgggatattggcattgagcagggtaagggtgattaggttttaatgggatggtaacgggtatgtgatcagttgccagggaaggagtagagatgtcccatacttgtgggttaaggtgggggaataggagaggaagacgcgaaggaggctttgggttgaggagaagggtggcaatgagatgcggctgtagtccaggaatagtcagggaagcagataatttggttaaaatatctcggcctaataagggaactgggcaggtggggataactaaaaaagagtgcataaaagagtgttgtccaagttggcaccagagtgggggagttttcaggggtttagaagcctggccgtcaatacccacaacagttatggaggcaagagaaacaggcccttgaaaagaaggtaatgtggagtgggtagcctccgtattgactaaggcgacggacttaccttccaccgtgagtgttacccgaagctcggcatccgtgatggtctacagagcttccgaggcgattgggcagcatcagtcttcagccgctaagccgagaaggagtcagagagccttgggccagagttccaggggctctgggagtggctgccaggtgagttgaacag
e canFam3.chr1                  102786576   0 + 122678785 I
e ponAbe2.chr19                  56818372 48100 +  60714840 I
e calJac3.chr22_GL285922_random     14254   0 +    138250 C
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739   0 +  51301725 C
e macFas5.chr19                  55797754   0 +  59248254 C
e rheMac3.chr19                  60656699   0 +  64156825 C
e panTro4.chr19                  59923111  10 +  63644993 I

a score=13937.000000
s hg38.chr19_GL949751v2_alt        928506 154 +   1002683 tccgatttccagtggggtcccgcacagatgggacacggcttaggaggaatcctgggctgcaggcattccttggcctggtggtcagatttctggcacttgtagcaagctcctgggggaggaggttctggaggaacgcctggccgctgcggttcag
s ponAbe2.chr19                  56866472 153 +  60714840 tccgatttccagtggggtcctgcacagatgggacacggcttaggaggaatcctgggctgcaggcattccttg-cctggtggtcagatttctggcacttgtagcaagctcctgggggaggaggttctggaggaacgcctggccactgcggtttag
i ponAbe2.chr19                 I 48100 I 11
e canFam3.chr1                  102786576   0 + 122678785 I
e calJac3.chr22_GL285922_random     14254   0 +    138250 C
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739   0 +  51301725 C
e macFas5.chr19                  55797754   0 +  59248254 C
e rheMac3.chr19                  60656699   0 +  64156825 C
e panTro4.chr19                  59923111  10 +  63644993 I

a score=0.000000
s hg38.chr19_GL949751v2_alt        928660 5 +   1002683 ttccc
e canFam3.chr1                  102786576 0 + 122678785 I
e ponAbe2.chr19                  56866625 11 +  60714840 I
e calJac3.chr22_GL285922_random     14254 0 +    138250 C
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739 0 +  51301725 C
e macFas5.chr19                  55797754 0 +  59248254 C
e rheMac3.chr19                  60656699 0 +  64156825 C
e panTro4.chr19                  59923111 10 +  63644993 I

a score=163881.000000
s hg38.chr19_GL949751v2_alt        928665 1997 +   1002683 ttcttgtgtgctggagatgtggctggggtttgtctcacagtggaggcaaggaattgcaacttttttctattattgtacaccttgaaggcgaggttaattaaatcctgttgtggggtttgagggccggaatttaattttt-ggagttttatttaatgtcgggagcagattgggtaataaaatgtgtattaagaataagacggccttttgacttttaagggtctagggctgtaaagcttctcagggttgctggcgaacgagccatgaattgggctggatttttatatttgatgaaaaagagcctaaacactatctgatttgggataaagaaaaaggagcattaaccttgactatgcctttagctccagccacctttctaagagtaaattgctgggcaggtggaagagggctagtcactgaacgaaactgtaagctggaccaggtgtggggaggggaggtgataaaaagataatacggtggaggagcggaggctgaggaagaattgggacctagctcagcctggggaggaggg-agaggtcagacgggtctgtagaaaaggaagattagaaagactcagcgacgcttggggttgagactgaggggacaggcaggagggaaagaaggaagatttgggacgagttgcactgggcacagagactaggaagggactgatgtgtaaaagaatgcctggacgtcaggcacctcagaccgtttgcccattttacgacaagaattatttagatcttgcaggatggaaaaattgaaagtgctgttttctggctatttggaactgctgtccagtttgtattggggtcaagcggcattgcagaagaaaataaggcatttaggttttaggtcaggtgtgagttgaagaggttttaagtttttgagaacacaggccaagggagagaaggaggaggaatggagggtggaaggttgcccatagtgaaggaggcaagcctagagaaaagagagagtagagacacggagggaaggggttcgggagttcttaccttccagaaaagcgggaaaggggttgg-------------------ggcatggatataaggggttggggcacagagataagaggttggggcatggaaataagggatcagggtgcagagata-------------------------------------------cgaggttggggtacttgcccctc---tagaaaagcgggacttgccgctaagagtgaaggagaaggggttgggggtttcttgccccccagaaaggtggagaaggggtagagacatggagaggaggggttggggaacttgccccttccccagaaaagtgggacttgccactaagggtgaaggaccaaggcaggcatccctgcgtgatctgacacctctgaagcgtgggtatataatcagagaggcgtccctgcaatgattaaacgccaagggaaggctgccttccctagtccgtgaccggcgccggagttttgggtccacagataaaacgtgtctcctttgtctctaccagaaaatgaaaggaattgaaattaagagaagggagagattgaagagtggaaaggagaaagtggttgagggacagtgagagaggttggagaagagagtaagaagaggtcgcttacccaatttaaacttggtgagatgttccttgggctggtgggtctgaggacctgaggtcgtaggtggatctttttcacagagcaaagagcaaga---caggggattgatctcccaagggaggtcccccgatccaagtcacggcaccaaaTTtcatgtgcgtccatgtgaagagaccaccaaacaggctttgtgtgagcaataaagcttttaat--cacctgggtgcaggtgggctgagtccgacaagagagtcagcgaagggggat-ggggtggggccgttttataggatttgggtaggtaaaggaaaattacagtcaaagcggggttgttctctggcgggcagagtgggggtcacaaggtgctctgtaggggagcttttgagccaggatgagccaggagaaggaatttcacaagacaatgtcatcagttaaggca
s ponAbe2.chr19                  56866636 2059 +  60714840 ttcttgtgtgctggaggtgtggctggggtttgtctcacagtggaggcaaggaattgcaacttttttctattattgtacaccttgaaggtgaggttaattaaatcctgttgtggggtttgagggccggaatttaattttttggagttttatttaatgtcgggagcagattgggtaataaaatgtattttgagaataagacggccttttgaccttttagggtctagggctgtaaag--tgtcagggttgctgccgaacaagtcatgaactgggctggatttttatatttgatgaaaaagagcctaaacgctatctgatttgggataaagaaaaaggagcatgaaccttgactatgcctttagctctagccacctttttaagagtaaattgctgggcaggtgggggagggctagtcacagaacgaaac------ccggacccggtgtgaggaggggaggtgataaaatgattatagggtggaggagcagaggctgaggaagaagtgggacctacctcagcctggcaaggaggggagaggtcagatggatctgtagaaaaggaagattagaaagactcagcgacgcttggggttgggactgaggggacaggcgggagggaaagaaggaagatttgggacgagttgcgctgggcacagagactagggagggactcatatgtaaaagaatgcctggacatcaggcatctcagactgtttgcccattttacgacaagaattatttacatcttgcaggatggaaaaattgaaagtgtcattttccggctatttggaactactgtcaggtttgtattggggttaagcggcgttgcagaagaaaataaggcatttaggttttaggacaggtgtgacttgaagaggttttaagtttttgagaacacaggccaagggaga--agaaggaggaatggagggtggaaggttgcccatagtgaaggaggcaagcacagagaaaagagagagtagagacacggagggaaggggtttgggggttcttaccctccagaaaagcaggaaaggggttggtgcagagataagaggtcggggcacggaaataagggattggggcacagagataagaggttggggcatggaaataagggattggggtgcagagatataagaggttggggcacggaaataagggattggggcacgagatacgaggttggggtacttgtccctcctgtggaaaagcgggacttgccgctaagagtgaaggagaaggggttgggggtttcttgccccccagaaaggtggagaaggggtagagacacggagagaaggggctggggtacttgccctttccccagaaaagcgggacttgccgctaagggtgaaggaccaaggcaggcatccctgcgtggtctgatgcctctgaaacctgggtgaataatcagagaggcgtccctgcagtgattaaacaccaagggaaggctgccttccc-agtccgtgaccggcgccggaggtttgggtccacagataaaacgtgtctcctttgtctctaccagaaaatgaaaggaattgaaattaagagaagggagagattgaagagtggaaaggagaaagtggttgagggacagtgagagaggttggagaagagagtaagaagaggccgcttacctaatttaaacttggtgagatgtttcttgggctgataggtctgaggacccgaggtcgtaggtggatctttttcacggagcaaagagcaggaggacaggggattgatctcccaagggaggtcccccgatccgagtcacggcaccaaaTTtcatgtgtgtccatgtgaagagaccaccaaacaggctttgtgtgagcaacaaggctgtttatttcacctgggggcaggcaggctgagtccaaaaagagagtcagcgaagggagataggggtggggctgttttatgggatttgggtaggtaaaggaaaattacagtcaaaggggggttgttctctggcaggcagagtgggggtcacaaggtacccagtgggggagcttttgagcaacgatgagccaggagaagggatttggcgagagaatggcatcagttaaggca
i ponAbe2.chr19                 I 11 C 0
e canFam3.chr1                  102786576    0 + 122678785 I
e calJac3.chr22_GL285922_random     14254    0 +    138250 C
e nomLeu3.chr10                 103362684  100 - 106955855 I
e chlSab2.chr6                   47609506  422 +  50890351 I
e papAnu2.chr19                  47905739    0 +  51301725 C
e macFas5.chr19                  55797754    0 +  59248254 C
e rheMac3.chr19                  60656699    0 +  64156825 C
e panTro4.chr19                  59923111   10 +  63644993 I

a score=33411.000000
s hg38.chr19_GL949751v2_alt        930662 126 +   1002683 gtaacaggccattttcacttcttttgtggtggaatgtcatcagttaaggcaggaaccagccatatggatgtgtacgtgcaggtcacaggggatatgatggcttagcttgggctcagaggcctgaca
s panTro4.chr19                  59923121 126 +  63644993 GTAACaggccattttcccttcttttgtggtggaatgtcatcagttaaggcaggaaccggccatatggatgtgtatgtgcaggtcacagggtatatgatggcttagcttgggctcagaggcctgaca
i panTro4.chr19                 I 10 C 0
s ponAbe2.chr19                  56868695 126 +  60714840 ggaacaggccattttcacttcttttgtggtggaatgtcatcagttaaggcaggaaccggccatctggatgtgtacatgcaggccacaggggatatgatggcttagcttgggctcagaggcctgaca
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e calJac3.chr22_GL285922_random     14254   0 +    138250 C
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739   0 +  51301725 C
e macFas5.chr19                  55797754   0 +  59248254 C
e rheMac3.chr19                  60656699   0 +  64156825 C

a score=1500.000000
s hg38.chr19_GL949751v2_alt        930788 1 +   1002683 G
s panTro4.chr19                  59923247 1 +  63644993 g
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56868821 1 +  60714840 G
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60656699 1 +  64156825 g
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55797754 1 +  59248254 g
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     14254 1 +    138250 g
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576 0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47609506 422 +  50890351 I
e papAnu2.chr19                  47905739 0 +  51301725 C

a score=172329.000000
s hg38.chr19_GL949751v2_alt        930789 101 +   1002683 CACCTACCTAAAAAATTCCAATAGCACTAAAAGGGTGTGTACAAAATGCAGTGGC-TGACTAACCATCTCCTCCATTGCTCCGCCTAAGAGACACCCACTTT
s panTro4.chr19                  59923248 101 +  63644993 cacctacctaaaaaattccaatagcactaaaagggtgtgtacaaaatgcagtggc-tgactaatcatctcctccattgctccgcctaagagacacccacttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56868822 101 +  60714840 CACCTACCTAAAAAATTCCAATAGCACTAAAAGGGTGTGTACAAAATGCAGTGAC-TAACCAACCGTCTCTTCCATTGCTCCGCCTAAGAGACACCCACTTT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60656700 102 +  64156825 cacctccttaaaaaattccaatagcactaaaagggtgtgtacaaaatgcaatggcttaaccaaccgtctcttccattgctccacctaagagacacccacttt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55797755 102 +  59248254 cacctccttaaaaaattccaatagcactaaaagggtgtgtacaaaatgcaatggcttaaccaaccgtctcttccattgctccgcctaagagacacccacttt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47905739 101 +  51301725 cacctgCTTAAAAAATTCCAATAGCACTAAAAGGGTTTGTACAAAATGCAATGGC-TAACCAACCGTCTCTTCCATTGCTCCGCCTAAGAGACACCCACTTT
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     14255  97 +    138250 catctactttaaaattttcaatagcactaaaagggtatgtacaaaatgcaatggc-taaccaaccatctcttccattgct----ctaagagacacccacttt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47609506 422 +  50890351 I

a score=393349.000000
s hg38.chr19_GL949751v2_alt        930890 176 +   1002683 TAGCTGTTTTCTTTAGGAACTTGTTAATATTAGGTTTCTAAAAACATGTAACCATGTG---AATGAGCTTAGACTTACTGGATTCCTATCATAATAGGCGGGGCCTTAGTTATTCTACAGCGTTGTTCTTACTG----TTTTTTCTCTTCCAATGTTTATCTCTATGTCTGCATATCAACATT
s panTro4.chr19                  59923349 176 +  63644993 tagctgttttctttaggaacttgttaatattaggttgctaaaaacatgtaaccatgtg---aatgagcttagacttactggattcctatcataataggcggggacttagttattctacagtgttgttcttactg----ttttttctcttccaatgtttatctctatgtctgcatatcaacatt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56868923 176 +  60714840 TATCTGTTTTCTTTAGGAACTTGTTAATATTAGGTTTCTAAAAATGTGTAACCGTGTG---AATGAGCTTAGACTTACTGGATTCCTATCATAATAGGCAGGGACTTAGTTCTTCTACAGTGTTGTTCTTACTG----TTTTTTCTCTTCCAATGTTTATGTCTATGTCTGCATATCAACATT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60656802 173 +  64156825 tagctgttTTCTTTAGGAACTTGTTAATATTAGATTTCTAAAAATGTGTAACCATGTG---AATGAGCTTACACTTACTGGATTCCTATCATAATAGGCAGGGACTTAGTTCTTCTACAG---TGTTCTTACTG----TTTTTTCTTTTCCAATGTTTATGTCTACGTCTGCACATCAATATT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55797857 173 +  59248254 tagctgttTTCTTTAGGAACTTGTTAATATTAGATTTCTAAAAATGTGTAACCATGTG---AATGAGCTTACACTTACTGGATTCCTATCATAATAGGCAGGGACTTAGTTCTTCTACAG---TGTTCTTACTG----TTTTTTCTTttccaatgtttatgtctacgtctgcacatcaatatt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47905840 176 +  51301725 TAGCTGTTTTCTTTAGGAACTTGTTAATATTAGATTTCTAAAAATGTGTAACCATGTG---AATGAGCTTACACTTACTGGATTCCTATCATAATAGGCAGGGACTTCGTTCTTCTACAGTGTTGttcttactg----ttttttcttttccaatgttTATGTCTACGTCTGCACATCAATATT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47609928 176 +  50890351 TAGCTGTTTTCTTGAGGAACTTGTTAATATTAGATTTCTAAAACTGTGTAACCGTGTG---AATGAGCTTACACTTACTGGATTCCTATCATAATAGGCAGGGACTTAGTTCTTCTACAGTGTTGTTCTTACTG----TTTTTTCTTTTCCAATGTTTCTGTCTACGTCTGCACGtcaatatt
i chlSab2.chr6                  I 422 C 0
s calJac3.chr22_GL285922_random     14352 182 +    138250 tggctgttttcgttagg-tctttttaatattaggtttctaaaaatgtgTAACCATGTGAATAATGAACTTAGACTTACTAGATTCCTATCATAATAGGTGGGGACTTTGTTCTCCTACAGTGTTGTTCTTACTGTTTTTTTTTTCTCTTTCAATGTTTATGTCTACGTCTGCATATCAGTACT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=50167.000000
s hg38.chr19_GL949751v2_alt        931066 35 +   1002683 CAGTATCACAtttttttttt-------ttgagacagagtctc
s panTro4.chr19                  59923525 33 +  63644993 cagtatcacatttttttttt---------gagacagagtctc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56869099 41 +  60714840 CAGTATCACttttttttttttt-ttttttgagacagagtctc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60656975 42 +  64156825 CAGTATCACttttttttttttttttttttgagacagagtctt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55798030 37 +  59248254 cagtatccc-----tttttttttttttttgagacagagtctt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47906016 42 +  51301725 cagtatcacttttttttttttttttttttgagacggagtctc
i papAnu2.chr19                 C 0 I 299
s chlSab2.chr6                   47610104 40 +  50890351 cagtatcac--tttttttttttcttttttgagacagagtctt
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e calJac3.chr22_GL285922_random     14534  0 +    138250 C
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=460204.000000
s hg38.chr19_GL949751v2_alt        931101 234 +   1002683 actctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcagcctc--------------------------------agtctcctgagtagctgggactacaggcgtgtgccaccacgactggctaatttttgtatttttagtagagacagggtttcaccatgttggctgagctggtctcgatctcctgacctcgtgatctgcccacctcagcctcccgaagtgctgggattacaggcatgagccaccacgcccggc
s panTro4.chr19                  59923558 266 +  63644993 gctctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcagcctctgcctcctgggttcaagtgattctcctgcctcagtctcctgagtagctgggactacaggcgtgtgccaccacgactggctaatttctgtatttttagtagagacagggtttcaccatgttggccgagctggtctcgatctcctgacctcgtgatctgcccacctcagcctcccgaagtgctgagattacaggcatgagccaccacgcccggc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56869140 266 +  60714840 gctctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcagcctccgactcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccaccacgactggctaatttttgtatttttagtagagacagggtttcaccatgttagctgggctggtctcgatctcctgacctcgtgatctgcccacctcagcctcctgaagtgctgggattacaggcatgagtcaccacgcccggc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60657017 266 +  64156825 actctgtcacccagactggagtgcagcggcacaatctcagctcactgcagcctccacctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccaccacgactggctaatttttgtatttttagtagagacggggtttcgccatgttggccaggctgatctcgatcttctgaccgggtgatccgcccgcctcagcttcccaaagcgctgggattataggcatgagccaccacgcctggc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55798067 266 +  59248254 actctgtcacccaggctggagtgcagcggcacaatctcagctcactgcagcctccacctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccaccacgactggctaatttttgtatttttagtagagacggggtttcgccatgttggccaggctgatctcgatcttctgacctggtgatctgcccgcctcagcttcccagagcgctgggattataggcatgagccaccacgcctggc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47906357 266 +  51301725 actctgtcacccagactggagtgcagcggcacaatctcagctcactgcagcctccacctcctgggttcaagtgattctcctgcctcggcctcctgagtacctgggactacaggcgtgtgccaccacgactggctaatttttgcatttttagtagagacggggtttctccatgttggccaggctgatctcgatcttctgacctggtgatccgcccgcctcagcttcccaaagcactgggattataggcgtgagccaccatgcctggc
i papAnu2.chr19                 I 299 C 0
s chlSab2.chr6                   47610144 266 +  50890351 actctgtcatccagactgaagtgcagcagcacaatctcagctcactgcagcctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctggggctacaggcgtgtgccaccacgactggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctgatcttgatcttctgacctggtgatccgcccgcctcagcttcccaaagcgctgggattacaggcatgagccaccgcgcctggc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e calJac3.chr22_GL285922_random     14534   0 +    138250 C
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=413140.000000
s hg38.chr19_GL949751v2_alt        931335 201 +   1002683 cAGTATCACATGTTTATACCCACAGATATTCGCAGCCGAGAATTTTCGGGTAATATAACTTGCTTCTTTTATTTTTGTTGTTGTTATTGTTCCCCTAAAGTTTATAtttgttttttatttttattttcttttgaggcagggtctcactctgtcacccaggtttgacagcagtggtgcaatcatggctcactgcagcctcaa
s panTro4.chr19                  59923824 199 +  63644993 cagtatcacatttttatacccacagatattcgcagctgagaattttcgggtaatataacttgcgtcttttatttttgttgttgttattgttcccctaaagtttatat--gttttttatttttattttcttttgaggcagggtctcactctgtcacccaggtttgagagcagtggtgcaatcatggctcactgcagcctcaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56869406 201 +  60714840 cAGTATCACATTTTTATACCCACAGATATTCGCAGCTGAGAATTTTCAGGTAATATAACTTGCTTCTTTTATTTTTGTTGTTGTTATTGTTCCCCTAAAGTTTATAtttgttttttatttttattttcttttgaggcagggtctcactctgtcacccaggtttgagagcagtggtgccatcatggctcactgcagcctcaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60657283 183 +  64156825 cAGTATCACATTTTTATACCCACAGATATTCACAGCTGAGAATTTTCAGGTAATATAACTTGCTTCTTTTATTTTTGTGGTTG---TTGTTCCCCTAACGTTTATAtttgctctttatttttgttttcttttgaggcagggtct------------caggcttgagagcagtggtgcaatcatggctcactgcagcct---
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55798333 183 +  59248254 cagtatcacatttttatacccacagatattcacagctgagaattttcaggtaatataacttgcttcttttatttttgtggttg---ttgttcccctaacgtttatatttgctctttatttttgttttcttttgaggcagggtct------------caggcttgagagcagtggtgcaatcatggctcactgcagcct---
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47906623 186 +  51301725 cagtatcACATTTTTATACCCACAGATATTCACAGCTGAGAATTTTCAGGTAATATAacttgcttcttttatttttgttgttg---ttgttcccctaacgtttatatttgctctttatttttgttttcttttgaggcagggtct------------caggcttgagagcagtggtgcaatcatgactcactgcagcctcaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47610410 186 +  50890351 cagtatcacatttttatacccacagatattcacagctgagaattttcaggtaatataacttgctgcttttatttttgttgttg---ttgttcccctaacgtttatatttgctctttatttttgttttcttttgcggcagggtct------------caggcttgagagcagtggtgcaatcatggctcactgcagcctcaa
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     14534 192 +    138250 CAGTATCACATGTTTATACTCACAGATATTCACAGTTGAGAATTTTTAGGTAATATAACTTGCTTCCTTTATTTTTTTTTT-----TCCTTCCCCTAAAGTTTATATTTG----TCAttttcattttcttttgaggcagggcctcactctgtcagctaggcttgagagcagtggtgcagtcgtggctcactgcagcctcaa
i calJac3.chr22_GL285922_random C 0 I 104
e canFam3.chr1                  102786576   0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=385142.000000
s hg38.chr19_GL949751v2_alt        931536 201 +   1002683 cctccccgggctcaggtgatccccaacctcagcctcctgagtacctgagagtaggcatgtggtaccacacccagctaa-ttttttatattttttgtatatgagacaaggtttcaccatgttgcccaggctggtctcgaactcttaggctcaagcgatcccgcctcagcctcccaaagtgctggga-----------------------ttacaggtgtgagccac
s panTro4.chr19                  59924023 201 +  63644993 cctccccgggctcaggtgatccccaacctcagcctcctgagtacctgagagtaggcatgtggtaccacacccagctaa-ttttttatattttttgtatatgagacaaggtttcaccatgttgcccaggctggtctcgaactcttaggctcaagcgatcccgcctcagcctcccaaagtgctggga-----------------------ttacaggtgtgagccac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56869607 202 +  60714840 cctccctgggctcaggtgatccccaacctcagcctcctgagtacctgagagtaggcatgtggtaccacacccagctgatttttttgtattttttgtatatgagacaaggtttcaccatgttgcccaggctggtctcaaactcttaggctcaagcgatcccgcctcagcctcccaaagtgctggga-----------------------ttacaggtgtgagccac
i ponAbe2.chr19                 C 0 T 11733
s rheMac3.chr19                  60657466 201 +  64156825 -----------------------ctacctcagcctcctgagtatctgagagtaggcatgtggtaccacacccagctaa-ttttttgtattttttgtatatgagacgaggtttcaccatgttgcccaggctggtcttgaactcttaggctccagcgatcctgcctcattctctcagagtgctgggaGTGAGCCCACTCTGAGCCCACACTTACAGGTGTGAGCCAC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55798516 178 +  59248254 -----------------------ctacctcagcctcctgagtatctgagagtaggcatgtggtaccacacccagctaa-ttttttgtattttttgtatatgagactaggtttcaccatgttgcccaggctggtcttgaactcttaggctccagcgatcctgcctcattctctcagagtgctggga-----------------------ttacaggtgtgagccac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47906809 201 +  51301725 cctccccgggctcaggtgatccccaacctcagcctcctgagtatctgagagtAGGCATGTggtaccacacccagctaa-ttttttgtattttttgtatatgagacgaggtttcaccatgttgcccaggctggtcttgaactcttaggctccagcaatcctgcctcattctctcagagtgctggga-----------------------ttacaggtgtgagccac
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47610596 201 +  50890351 cctccccgggctcaggtgatccccaacctcagcctcctgagtacctgagagtaggtatgtggtaccacatccagctaa-ttttttgtattttttgtatatgagacgaggtttcaccatgttgcccaggctggtctcgaactcttaggctccagcgatcctgcctcattctcccaaagtgctggga-----------------------ttacaggtgtgagccac
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     14830 149 +    138250 CCTCcctgggctcaggtgatccccatcctccgtcttctgagtacctgagagtaggcacgtgctaccatacccagctaa--tttttgtgttttttgtatatgaggtggtgtttcacaatggcgtccaagctagtctgaaacttctgggctca--------------------------------------------------------------------------
i calJac3.chr22_GL285922_random I 104 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=155623.000000
s hg38.chr19_GL949751v2_alt        931737 94 +   1002683 tgtgccTAGGCTATACTGGTCTTTTTAAAATCTACTTAGTTTACTTGACCTCTAAAATTATTTTTCCTCTGTCTTCTGATAGCATCTCAGTATG
s panTro4.chr19                  59924224 92 +  63644993 tgtgcctaggctatactggtcttttaaaaatctacttagtttactTGACCTCTAAAATTATTTTTCCT--GTCTTCTGATAGCATCTCAGTATG
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60657667 94 +  64156825 TCTGCCTAGGCTATACCTGTCTTTTAAAAATCTACTTAGTTTACTTGACCTCTGTAATTATTTTTCATCTGTCTTCTGATAGCATCTCAGTATG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55798694 94 +  59248254 tctgcctaggctatacttgtcttttaaaaatctacttagtttacttgacctctgtaattatttttcatctgtcttctgatagcatctcagtatg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47907010 94 +  51301725 tctgcctagGCTatacttgtctttttaaaatctacttagTTTACTTGACctctgtaattatttttcatcTGTCTTCTGATAGCATCTCAGTATG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47610797 94 +  50890351 tctgcctaggctacacttgtctttttaaaatctacttagtttacttgacctctatcattatttttcatctgtcttctgatagcatctcagtatg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     14979 86 +    138250 --------ggcaatactTGTctttttaaaatctacttagtttacttgacctctataattatttttcctctttcttctaatagcttctcagtatg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e ponAbe2.chr19                  56869809 11733 +  60714840 T
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=57556.000000
s hg38.chr19_GL949751v2_alt        931831 24 +   1002683 ATTTTCCACTATGTTAAGACGAGG
s panTro4.chr19                  59924316 24 +  63644993 ATTTTCCACTATGTTAAGACAAGG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858076 24 +  60714840 ATTTTCCACTATGTTAAGACAAAT
i ponAbe2.chr19                 T 11733 C 0
s rheMac3.chr19                  60657761 24 +  64156825 ATTTTCCACTATGTTAAGACAAAT
i rheMac3.chr19                 C 0 I 335
s macFas5.chr19                  55798788 24 +  59248254 attttccactatgttaagacaaat
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47907104 24 +  51301725 ATTTTCCACTATGTTAAGACAAAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47610891 24 +  50890351 attttccactatgttaagacaaat
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     15065 24 +    138250 attttccactatgttaagacaagt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=49609.000000
s hg38.chr19_GL949751v2_alt        931855 21 +   1002683 AATTGACCCATTCTTACATTT
s panTro4.chr19                  59924340 21 +  63644993 AATTGACCCATTCTTACATTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858100 21 +  60714840 AATTGACCCATTCTTACATTT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60658120 21 +  64156825 AATTGACCCATTCTTACATTT
i rheMac3.chr19                 I 335 C 0
s macFas5.chr19                  55798812 21 +  59248254 aattgacccattctttttttt
i macFas5.chr19                 C 0 I 780
s papAnu2.chr19                  47907128 21 +  51301725 AATTGACCCATTCTTACATTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47610915 21 +  50890351 aattgacccattcttacattt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     15089 21 +    138250 aattgacccattattacattt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=205260.000000
s hg38.chr19_GL949751v2_alt        931876 117 +   1002683 GGAGGCTTCTCTAAGCAACTTTCCCATTCCCCCTTCACCCAAGCTGTGTGCTCACTAGCCCTGATTCACAGCCGTCGTCCTGGAACTTCTTGGTGCCATCCTTCTGTCTTTTCCcaa
s panTro4.chr19                  59924361 117 +  63644993 GGAGGCCTCTCTAAGCAACTTTCCCGTTCCCCCTTCACCCAAGCTGTGtgctcactagccctgattcacagccgtcgtcctggaacttctttgtgccatccttctgTCTTTTCCcaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858121 117 +  60714840 GGAGGCTTCTCTAGGCAACTTTCCCGTTCCCCCTTCACCCAAGCTGTGTGCTCACTAGCCCTGATTCACAGCCGTCGTCCTGGAACTTCTTTCTGCCATCCTTCTGTCTTTTCCcaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60658141 117 +  64156825 GGAGGTTTCTCTGAGCACACTTCCCGTTCCCCCTTCACCCAAGCTGTGTGCTCACCAGCCCTGATTCACAGCCGTCGTCCTGGAGCTTCTTTCTGCCATCCTTCTGTCTTTTcccaa
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47907149 117 +  51301725 GGAGGTTTCTCTGAGCACCCTTCCCGTTCCCCCTTCACCCAAGCTGTGTGCTCACTAGCCCTGATTCACAGCCGTCGTCCTGGAGCTTCTTTCTGCCATCCTTCTGTCTTTTCCCAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47610936 117 +  50890351 ggaggtttctctgagcaaccttcccgtttccctttcacccaagctgtttgctcactagccctgattcacagccgtcgtcctggagcttctttctgccatccttctgTCTTTTcccaa
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     15110 117 +    138250 gaagttttctctaagcaaccttcccattcccgctgcacctaagctgtgtgctcactagcccggattcacagctgtcatcctgaagcttctgtctgccgtccttctgTCTTTTCCcaa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e macFas5.chr19                  55798833 780 +  59248254 I

a score=11915.000000
s hg38.chr19_GL949751v2_alt        931993 5 +   1002683 gtgac
s panTro4.chr19                  59924478 5 +  63644993 gtgac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858238 5 +  60714840 gtgac
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60658258 5 +  64156825 gtgac
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55799613 5 +  59248254 gtgat
i macFas5.chr19                 I 780 C 0
s papAnu2.chr19                  47907266 5 +  51301725 GTGac
i papAnu2.chr19                 C 0 I 322
s chlSab2.chr6                   47611053 5 +  50890351 gtgac
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     15227 5 +    138250 gtgat
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576 0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=87402.000000
s hg38.chr19_GL949751v2_alt        931998 40 +   1002683 tcacctacctcaacctcccaaagtgccgggattacaggcg
s panTro4.chr19                  59924483 40 +  63644993 ccacctacctcaacctcccaaagtgctgggattacaggcg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858243 40 +  60714840 ccacctacctcaacctcccaaagtgctgggattacaggcg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60658263 40 +  64156825 ccacccacctcaacctcccaaagtgctgggattacaggca
i rheMac3.chr19                 C 0 I 332
s macFas5.chr19                  55799618 40 +  59248254 ccgcctgtctcagcctcccaaagtgctgggattacaggct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47907593 40 +  51301725 ccccccttctcggcctcccaaagtgctgggattacaggct
i papAnu2.chr19                 I 322 C 0
s chlSab2.chr6                   47611058 40 +  50890351 ccacccacctcaacctcccaaagtgctgggattacaggca
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     15232 40 +    138250 ccacccatctcaggctcctaaagtgctgggatgacaggcg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=67257.000000
s hg38.chr19_GL949751v2_alt        932038 33 +   1002683 tgagccactgtggccagccattcttttcctttt
s panTro4.chr19                  59924523 33 +  63644993 tgagccactgtggccagccattcttttcctttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858283 33 +  60714840 ttagccactgtggccagccattcttttcctttt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60658635 33 +  64156825 tgagccactgcgcccggccATTCTTTTCCTTTT
i rheMac3.chr19                 I 332 C 0
s macFas5.chr19                  55799658 33 +  59248254 tgagccactgcgcccggccATTCTTTTCCTTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47907633 33 +  51301725 tgagccactgcgcctggccattcttttcctttt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47611098 29 +  50890351 tgagccatcg----tggccattcttttcctttt
i chlSab2.chr6                  C 0 I 1988
s calJac3.chr22_GL285922_random     15272 33 +    138250 taagccaccattcccagccattcttttcctttt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576  0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=1738065.000000
s hg38.chr19_GL949751v2_alt        932071 781 +   1002683 ttaaaacaatttttatcttctttattttaagtagagatg-gggtctcactatgttgcccaggctggtcttgaactcctgggctcaagcgatcctcctgccttggcctcccacagtgctaggattacagacatgatccactgcacttggccCAgtggtacagttttacactcattagatggtcaagaaatgcctaaacgctataataaatatagaactttaccttgagaagacctaacatttccttcagaaagtaaatatgagaggggtGGAGACGGTGCATTATC-----TTATTTTTATGAttttaaaaatgtatacagaattgtacatatttatggggtggacagcaatattgcagtacatgtatacaacgtgctatgatcaaatcagggtaattgacatattcatcCC----TGTAtt-ttttgagacaaagtcaggcttcgtcacccgagctagagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagccattctcccacctcagccccctgagttgctgggagtatagggatgcaccaccacacctggctaatttttgtgttttt----ttgttttg--ttggtagagatgaggtttcaccatgttgcacaggctgatcttgTTTTCTAATGTGAAGGGAAGCGGGCAACGTGCTAGTTTTACACTAAGGAA----AATGAATGACATACCCAAACTGCCTGCAAGACCCGTTCTGAGAGACGAAA-GGAGATTTGTTAGACCGCAGTGGGAGATGGA------GTGAGGGTGAGAGTTTCTGGGG
s panTro4.chr19                  59924556 780 +  63644993 ttaaaacaatttttatcttctttattttaagtagagatg-gggtctcactgtgttgcccaggctggtctcgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgttaggattacagacatgatccactgcacttggccCAgtggtacagttttacactcattagatggtcaagaaatgcctaaatgctataataaatatagaactttaccttgagaagacctaacatttccttcagaaagtaaatatgagaggggtggagatggtgcattatC-----TTATttttattattttaaaaatttatacataattgtacatatttatggggtagacagcaatatttcaatacatgtatacaatgtgttatgatcaaatcagggtaattaacatattcatccc----tttatt-ttttgagacaaggtcaggctttgtcacccgagctagagcgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagccattctcccacctcagccccctgagttgctgggagtatagggatgcaccaccacacctggctaatttttgt-ttttt----ttgttttg--ttggtagagatggggtttcaccatgttgcacaggctgatcttgTTTTCTAATGTGAAGGGAAGCGGGCAACGTGCTAGTTTTACACTAGGGAA----AATGAATGACACACCCAAACTGCCTGCAAGGCCCGTTCTGAGAGACGAAA-GGAGATTTGTTAGACCGCAGTGGAAGATGGA------GTGAGGGTGAGAGTTTCTGGGG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56858316 792 +  60714840 tttaaacaatttttatcttctttattttaagtagagatg-gggtctcactatgttgcccaggctggtcttgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctaggattacagacatgatccattgcacttggccCAgtggtacagttttacactcattagatggtcaagaaatgcctaaatgctataataaatatagaactttaccttgcgaagacctaacatttccttcagaaagtaaatatgagaggggtGGAGATGGTGCAttatcttattttatttttattattttaaaaatttatacatagttgtacatatttatggggtagacggcaatatttcaatacatgtatgcaatgtgttatgatcaaatcagggtaattaacatattcatcactttatttatt-tttcgagacaaagtcaggctttatcacccgggctagagtgcagtggtgtgatcttagctcactgcaacctctgccttccaggctcaagccgttctcccacctcagccccctgagttgctgggagtatagggatgcaccaccacacgtggctaatttttg--ttttt----ttgttttt--ttggtacagatggggtttcaccatgttgcacaggctgaccttgTTTTCTAATGTGAAGGGAAGCGGGTAACGTGCTAGTTTTATACTAAGGAAAATGAATGAATGACATACCCAAACTGCCTGCAAGGCCCGTTCTGAGAGACGAAA-GGAGATTTGTTAGACTGCAGTGGAAGATGGA------GTGAGGGTGAGAGTTTCTGGGG
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60658668 771 +  64156825 TTAAAAAaatttttatcttc-----tttaagtagagatg-ggatctcactatgttgcccaggctggtcttgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctaggattacagacatgatccactgcacccgaccCAgtggtacagttttacacacattagatggtcaagaaatgcct-aatgcgataataagtatagaactttactttgagaagacctaacatttccttcagaaagtaaatatgagaggggtagagatggtgcattatCTTAttttatttttattattttaaaaatgtatacataattgtacatatttatggggtagacagcaatatttcaatacatgtgtacaatgtgttttgatcaaatcagggtaattagcatattcatcac----ttTGtttttttgagacatggtcgggctttgtcacccgggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagccgttctcccacctctgccccctgaggtgctgggagaatagggatgcaccaccacacctggctaatgtttg--ttgtt--------------ttggtagagatggggtttcaccatgttgcacaggccgatGTTGTTTTCTGATGTGAAGGGAAGAGGGCAACGTGCTAGTTTTATACTAAGGAA----AACGAATGACGTACCCAAACTGCCTGCACGGCCCGTTCTGAGAGACGAAA-GGAGATTTGTTAGACTGCAGTGGAAGATGGA------GTGAGGGTGAGAGTTTCTGGGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55799691 771 +  59248254 TTAAAAAaatttttatcttc-----tttaagtagagatg-ggatctcactatgttgcccaggctggtcttgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctaggattacagacatgatccactgcacccgaccCAgtggtacagttttacacacattagatggtcaagaaatgcct-aatgcgataataagtatagaactttactttgagaagacctaacatttccttcagaaagtaaatatgagaggggtagagatggtgcattatCTTAttttatttttattattttaaaaatgtatacataattgtacatatttatggggtagacagcaatatttcaatacatgtgtacaatgtgttttgatcaaatcagggtaattagcatattcatcac----ttTGtttttttgagacatggtcaggctttgtcacccgggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagccgttctcccacctctgccccctgaggtgctgggagaatagggatgcaccaccacacctggctaatgtttg--ttgtt--------------ttggtagagatggggtttcaccatgttgcacaggccgatGTTGTTTTCTGATGTGAAGGGAAGAGGGCAACGTGCTAGTTTTATACTAAGGAA----AACGAATGACGTACCCAAACTGCCTGCACGGCCCGTTCTGAGAGCCGAAA-GGAGATTTGTTAGACTGCAGTGGAAGATGGA------GTGAGGGTGAGAGTTTCTGGGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47907666 772 +  51301725 ttaaaaaaatttttatcttc-----tttaagtagagatg-ggatctcactatgttgcccaggctggtcttgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtcctgggattacagacatgatccactgcacccaacccagtGGTACAGTTTTACACGCATTAGATGGTCAAGAAATGCCT-AATGCGATAATAAGTATAGAACTTTACTTTGAGAAGACCTAACATTTCCTTCAGAAAGTAAATATGAGAGGGGTGGAGATGgtgcattatcttattttatttttattatttttaaaatgtatacataattgtacatatttatggggtaggcagcaatatttcaatacatgtgtacaatgtgttttgatcaaatcagggtaattagcatattcatcac----tttgttattttgagacatggtcgggctttgtcacccgggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagccgttctcccacctctgccccctgaGGTGCTGGGAGAATAGGGatgcacccccacacctggctaatgtttg--ttgtt--------------ttggtagagatggggtttcaccatgttgcacaggccgATGTTGTTTTCTGATGTGAAGGGAAGAGGGCAACGTGCTAGTTTTATACTAAGGAA----AACGAATGACGTACCCAAACTGCCTGCACGGCCCGTTCTGAGAGCCGAAAGGGAGATTTGTTAGACTGCAGTGGAAGATGGA------GTGAGGGTGAGAGTTTCTGGGG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47613115 771 +  50890351 TTAAAAAaatttttatcttc-----tttaagtagagctg-ggatctcactatgttgcccaggctggtcttgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctaggattacagacatgatccactgcacccgaccCAgtggtacagttttacacgcattagatggtcaagaaatgcct-aatgtgataataagtatagaacttgactttgagaagacctaacatttccttcagaaagtaaatatgagaggggtggagatggtgcattatCTTACtttatttttattattttaaaaatgtatacataattgtacatatttatggggtagacagcaatatttcagtacatgtgtacaatgggttttgatcaaatcagggtaatgagcatattcatcac----ttTGtttttttgagacatggtcgggctttgtcacccaggctggagtgcagtgatgtgatctcagctcactgcaacccctgcctcccaggctcaagccgttctcccacctctgcccactgaggtgctgggagaatagggatgcaccaccacacctggctaatgtttg--ttgtt--------------ttggtagagatggggtttcaccatgttgcacaggccgatGTTGTTTTCTGATGTGAAGGGAAGAGGGCAACGTGCTAGTTTTATACTAAGGAA----AACGAATGACGTACCCAAACTGCCTGCACAGCCCGTTCTGAGAGACGAAA-GGAGATTTGTTAGACTGCAGTGGAAGATGGA------GTGAGGGTGCGAGTTTCTGGGG
i chlSab2.chr6                  I 1988 C 0
s calJac3.chr22_GL285922_random     15305 792 +    138250 taaaaaaactttttctcttctttatttttagtggagacgcgggtctcactatgctgcccaggctggtcttgaactcctcggcttaagtgatcctcctgccttgcccacccgaagtgctaggattacagacgtgatccactgtaccTCGTGCAgtggtatagttttacactcattagatgatcaagaaatgcctaaatgccataataaatgtagaactctactttgagaagacctaatatttccttcagaaagtaattatgagaggggtGGAGATGGTGCAttatcttattttattttt---attttaaaaatttatacataattgtacatatttatggggtaggtaacaatatttcaatacatatataccatgtgttatgatcagat-gggataattagcatattcatcac----tttatt-ttttgagataaggtcgggctctgtcactcaggctggagtgcagcggtgtgatctcagctcactgcaacctctgcctcccggactcaaacccttctcccacctcagcccccggagttgctaggactataggcatgcatcaccacacctggccgatttttg--ttttctgttttgttttgttgtggtagagatggggtttcaccgtgtcgcacaggctgatcttgTTTTCTAAAGTGCAGGAAAGCAATCAACAGGCTAGTTTTACACTAATGAA----AATGAACGACATACCCAAACTGCCCGCAAGGCCTGTTCTAAGAAATGAGA-GGAG-TGAGTTAGACTGCAGTGGAAGATGGAGTTGGGGTTGGGGTGAGTGTTTCTGGGG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                  102786576   0 + 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=1384272.000000
s hg38.chr19_GL949751v2_alt        932852 578 +   1002683 AAA-ACCAGACA-AGAGCACAGAGGGCCAAAGGGAAGCACGGGAGGATTTTGCACAGAGGATGGAACAGAGTCAACCCTGAGAGCTGGGAACCTTAGAGATCCGTCTGGAGCCCATATTAGAGA-GGTTGAAGAAAGAGGCCAGTATG-TGGTCCAGCCAGGGTACCATGTCATCCACAGTGTGCAGG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAATGGAGGGTGCCCTcagacagagaggcagacagacagacagacaCTGGCCGAACGGCTCCCTGATGGAACACCAGGAGGAGGCAGCATGGCC--TCGTTTCCACAGCTGTAGCCTCTGCCCTCCTGCTTCCACGCTCCACACACGC------CAGTCTTTGAGTCGCCTCCCATGCCATGATCCCTCCCTTGGATACGACCGTGCC-TGGGGTTC-AGCGGTCATGAACATAACCCGCGGCTGTGAACATCCTGTCGGCCTCCATCCTGACCCCCGTTTGATTTCCGGGTCAGCGGGAGGGGCGGGAGGGGCGGAAGCGGCCTCTGCACAGCCCTGCCCCTGTGCCGCAGGCGCTTCCTCCGGCTG
s panTro4.chr19                  59925336 580 +  63644993 AAA-ACCAGACA-AGAGCACAGAGGGCCAAAGGGAAGCACGGGAGGATTTTGCACAGAGGATGGAACAGAGTCAACCCTGAGAGCTGGGAACCTTAGAGATCCGTCTGGAGCCCATATTAGAGA-GGTTGAAGAAAGAGGCCAGTATG-TGGTCCAGCCAGGGTACCATGTCATCCACAGTGTGCAGG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAATGGAGGGTGCCCTcagacagagaggcagacagacagacagacaCTGGCTGAACGGCTCCCTGATGGAACACCAGGAGGAGGCAGCCTGGCC--TCGTTTCCACAGCTGTAGCCTCTGCCCTCCTGCTTCCATGTTCCACACACAC----CACAGTCTTTGAGTCGCCTCCCATGCCACGATCCGTCCCTTGGATACGACCGTGCC-TGGGGTGC-AGTGGTCATGAACATAACCCGCGGCTGTGAACATCCGGTCGGCCTCCATCCTGACCCCCGTGTGATTTCCGGGTCTGCAGGAGGGGCGGGAGGGGCGGAAGCGGCCTCTGCACAGCCCTGCCCCTGTGCCGAAGGCGCTTCCTCCGGCTG
i panTro4.chr19                 C 0 I 681
s ponAbe2.chr19                  56859108 570 +  60714840 AAA-ACCAAAC---GAGCACAGAGGGCCAAGGGGAAGCACGGGAGGGTTTTTCACAGAGGGTGGAACAGAGTCAACCCTGAGAGCTGGGAACGTTAGAGATCCGTCTGGAGCCCATATTAGAGAGGGTTGAAGAAAGAGGCCAGTATG-TGGTCCAGCCAGGGTACCATGTCATCCACAGTGTGCAAG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAATGGAGGGTGCGCTcagacagagagccagacagacagacagacaCTGGCTGAACGGCTCCTTGAGGGAACACCAGGAGGAGGCAGCATGGCC--TCCTTTCCACAGCTGTAGCCTCTGCCCTCCTGCTTCCACGCTCCACACACGC----CACAGTCTTTGAGTCACCTCCCATGCCATGATCCGTCCCTTGGATACGACCATGCC-TGGGGTTC-AGTAGTCATGAACATAACCCGCGGCTGTGAACATCCGGTCGGCCTCCATCCTGACCCCCGTGTGATTTCTGGGTCT---------GCGGGAGGGGCGGAAGCGGCCTCTGCACAGCCCTGACCCTGTGCCGCAGGCGCTTCCTCCGGCTG
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60659439 566 +  64156825 GGACACGAGACA-AGAGCACAGACGGCCAAGGGGAAGCACGGGA-GGTCCTGCACAGAGGAGGGAACAGCGTCAGCCCTGAGAGCTGGGAACGTTAGAGGTCCGTGTGGAGCCCGTATTAGAGAAGCTTGAAGAAAGAGGACGGTATG-TGGTCCAGCCAGGGTACCGGGTCATCCACAGTGTGCAGG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAACGGA-GGTGCCCTCAGACAGAGAGC----CAGACAGACAGACACCGGCTGAACGGCTCCTTGATGGAACACCAGGAGGAGGCAGCATGGCC--TCCTTTCCACC-CTGTAGCCTCTGCCCTCCTGCTCCCATGCTCCACACACGC----CACAGTCTTTGAGTCGCCTCCCATGCCATGATCCGTCCCTTGGATACAACCATGCC-TGGGGTTC-AGTGGTCATGAACATAACCCGCGGCTGTGAACGTCCGGTCGGCCTCCATCCTGATCCCCGTGTGATTTCCGGGTCG---------GCGGGAGGGGCGGGAGCGGCCTCTGCACAGCCCTGACCCTGTGCCGCAAGCGCTTCCTCCGGCTG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55800462 566 +  59248254 GGACACGAGACA-AGAGCACAGACGGCCAAGGGGAAGCACGGGA-GGTTCTGCACAGAGGAGGGAACAGTGTCAGCCCTGAGAGCTGTGAACGTTAGAGGTCCGTGTGGAGCCCGTATTAGAGAAGCTTGAAGAAAGAGGACGGTATG-TGGTCCAGCCAGGGTACCGGGTCATCCACAGTGTGCAGG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAACGGA-GGTGCCCTcagacagagagc----cagacagacagacaCCGGCTGAACAGCTCCTTGATGGAACACCAGGAGGAGGCAGCATGGCC--TCCTTTCCACC-CTGTAGCCTCTGCCCTCCTGCTCCCATGCTCCACACACGC----CACAGTCTTTGAGTCGCCTCCCATGCCATGATCCGTCCCTTGGATACGACCATGCC-TGGGGTTC-AGTGGTCATGAACATAACCCGCGGCTGTGAACGTCCGGTCGGCCTCCATCCTGATCCCCGTGTGATTTCCGGGTCG---------GCGGGAGGGGCGGGAGCGGCCTCTGCACAGCCCTGACCCTGTGCCGCAAGCGCTTCCTCCGGCTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47908438 569 +  51301725 GGACACGAGACA-AGAGCACAGACAGCCAAGGGGACTCACAGGAGGGTTCTGCACAGAGGAGGGAACA--GTCAGCCCTGAGAGCTGGGAACGTTAGAGGTCCGTGTGGAGCCCGTATTAGAGAAGGTTGAAGAAAGAGGACGGTATG-TGGTCCAGCCAGGGTCCCGTGTCATCCACAGTGTGCAGG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAACGGA-GGTGCCCTcagacagagagccagacagacagacagacaccgGCTGAACGGCTCCTTGATGGAACACCAGGAGGAGGCAGCATGGCC--TCCTTTCCACC-CTGTAGCCTCTGCCCTCCTGCTCCCATGCTCCACACACAC----CACAGTCTTTGAGTCGCCTCCCATGCCATGATCCGTCCCTTGGATACGACCATGCC-TGGGGTTC-AGTGGTCATGAACATAACCCGCGGCTGTGAACATCCGGTCGGCCTCCATCCTGATCCCCGTGTGATTTCCGGGTCG---------GCGGGAGGGGCGGGAGCGGCCTCTGCACAGCCCTGACCCTGTGCCGCAGGCGCTTCCTCCGGCTG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47613886 567 +  50890351 GGACACGAGACA-A-AGCACAGAGGGCCAAGGGGAAGCACGGGAGGGTTCTGCACAGAGGAGGGAACAGAGTCAGCCCTGAGAGCTGGGAATGTTAGAGGTCCGTCTGGAGCCCGTATTAGAGAAGGTTGAAGAAAGAAGCCAGTATG-TGGTCCAGCCAGGGCACCGTGTCCTCCACAGTGTGCAGG----GAG---GAGGATG-GGGTCTCCA-CAGATTCCTTCCATCCCAAATGGA-GGTGCCCTcagacagagagc----cagacagacagacaCTGGCTGAACGGCTCCTTGATGGAACACCAGGAGGAGGCAGCATGGCC--TCCTTTCCACAGCCGTAGCCTCTGCCCTCCTGCTCCCATGCTCCACACACGC----CACAGTCTTTGAGTCGCCTCCCATGCCATGATCCGTCCCTTGGATACGACCATGCC-TGGGGTTC-GGTGGTCATGAACGTAACCCGCGGCTGTGAACATCCGGTCGGCCTCCATCCTGATCCCCGTGTGATTTCCGGGTCG---------GCGGGAGGGGCGGGAGCGGCCTCTGCACAGCCCTGACCCTGTGCCGCAGGCGCTTCCTCCGGCTG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     16097 544 +    138250 AAA-ACCAGAT---GAGCACAGAGGGCCAAGGGGAAGCATGGAG-GGTTCTGCGCAGAGGATGGAACAGAGTCGGCCGTGAGAGCTGGGAACGTTAGAGATTCATCTGGAGCCCGTATTACGGAAGGTTGAAGAAAGAGGCTGGTATG-TGGTCCAGCCAGGGTACCATGTGATCCACAGTGTGCAGG----GAG---G------------------AGACTCCTCCCATCCCAAATGGAGGGCGTCCTCGGACAGGGAGC--------CAGGCAGACACTAGCTGAACGGCTCCTTGATGGAGCACCAGGAGGAGGCAACATGGCC--TCCTTTCCAAG-CTGTAGCCTCAACCCTCCTGCTCCCATGCTCCACGTACAC----CACAGTGTTTGAGTTGTGTCCCATGCCATGATCCATCCCTTGGATATGACCATGCC-TGGGGTTC-ACTGGTTATGAGGAGAACCCGTGGCTGTGAACATCTGGTCGACCTCCATCCTGACTCCCGTGAGATTTCCGGGGCT---------GTGGGAGGGGTGGGAGTGGCCTCTGCATAGCCCTGACCCTGTGCCGCGGGCGCTTCCTCCGGCTG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20066459 551 - 122678785 AAA-AAAAAACACAAAATACAGGAGCCTACAGGGAACCATGGGAGTGTTTTGTACAGAGGATAGAACAGGGTCAGCTATGAGGCTTGGGGATA-CAGAGGTCAATCCATAACATGTATTAGGAAAGGCTG----AAGAGGTCAGTATGATGGTCCAGTTAGGTTGCCATAATATCCGTGATGTGCAAGCTATGAGTGAAAGGATGCTAGCATCCATTAGATACTCCCTATCCCAAATGAACAGAGTCCTTGGACAAAAAAC----CAAATAGACA---------TCAACAACTCCTTTATGGGGCATCACAGAGAAGACCCGTGACCCTCCTTCTCTACAGTCATAACCCCTATCTTCCTGCTCTTATGTTCCACACACTCCAAGCATGGTCTTTA---------------CACTCCCTACCTCATAGACACAACCAAGCCTTGAAGTTCTAATGGT-------GGGACCCATGGTTATGGCCATCTGGTCGACCCCCATCCTGATGACTGTGTGGTTTCTGGGTCT---------GTGGGAGGGGTGGGAGTGGCCTGTGGACAGCTCTGACCCGGAGCAACAGGGGTTTCTTTCTGCTG
i canFam3.chr1                  I 1307 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=515810.000000
s hg38.chr19_GL949751v2_alt        933430 234 +   1002683 TGCCAGTCCTCTGCCAGAAACCCCGCCAGGATTATTAGGATCACAGCCCCGAGGCATATCCGGACCAGGTTGCCCTTGGTGTAGTACTGGCGGGCAGGACCTGGAGGAATGAGGAGAGGCAGGAGCAGGTGA-AAGAGCCCACCTCCAGGACCCCCTCCAAGCCACAT-CTGGGCTTCTCA------------------GAGATCCTATTATTCTCTACTAGCTAGGGGATGCCGCTCACTTTCCTGGAGGGTC
s ponAbe2.chr19                  56859678 234 +  60714840 TGCCAGTCCTCTGCCAGAAACCCCGCCAGGAGTATTAGGATCACAGCCCCAAGGCATATCCGGACCAGGTTGCCCTTGGTGTAGTACTGGTGGACAGGACCTGGAGGAATGAGGAGAGGCAGGAGCAGGTAA-AAGAGCCCACCTCCAGGATCCCCTCCAAGCCACAT-CTGGGCTTCTGA------------------GAGATCCTATTATTCTCTACTAGCTAGGGGATGCCACTCGCTTTCCTGCAGGGTC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60660005 233 +  64156825 TGCCAGTCCTCTGCCAGAAACCCTGCCAGGAGTATTAGGATCACAGCCCCGAGGCATATGCGGACCAGGTTGCCCTTGGTGTAGTACTGGCGGGTGGGACCTGGAGGAATGAGGACAGGCAGGAGCGGGTGG-AAAAGCCCACCTCCAGGACCCTCTCCAAGCCACATCCTGGGCTTCTCA------------------GAGAGCCTGTTATTCTCCACTAGCT--GGGGTGCCATTCTCTTTCCTGGAGGGTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55801028 233 +  59248254 TGCCAGTCCTCTGCCAGAAACCCTGCCAGGAGTATTAGGATCACAGCCCCGAGGCATATGCGGACCAGGTTGCCCTTGGTGTAGTGCTGGCGGGCGGGACCTGGAGGAATGAGGACAGGCAGGAGCGGGTGA-AAAAGCCCACCTCCAGGACCCTCTCCAAGCCACATCCTGGGCTTCTCA------------------GAGAGCCTGTTATTCTCCACTAGCT--GGGGTGCCATTCTCTTTCCTGGAGGGTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47909007 233 +  51301725 TGCCAGTCCTCTGCCAGAAACCCTGCCAGGAGTATTAGGATCACAGCCCCGAGGCATATGCGGACCAGGTTGCCCTTGGTGTAGTGCTGGCGGGCGGGACCTGGAGGAATGAGGACAGGCAGGAGCGGGTCA-AAAAGCCCACCTCCAGGACGTTCTCCGAGCCACATCCTGGGCTTCTCA------------------GAGATCCTGTTATTCTCCACTAGCT--GGGATGCCATTCTCTTTCCTGGAGGGTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47614453 233 +  50890351 TGCCAGTCCTCTGCCAGAAACCCTGCCAGGAGTATTAGGATCGCAGCCCCGAGGCATATCCGGACCAGGTTGCCCATGGTGTAGTGCTGGCGGGCGGGACCTGGAGGAATGAGGACAGGCAGGAGCGGGTGA-AAAAGCCCACCTCCAGGACCCTCTCCGAGCCACATCCTGGGCTTCTCA------------------GAGATCCTGTTGTCCTCTACTAGCT--GGGATGCCATTCTCTTTCCTGGAGGGTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     16641 233 +    138250 TGCCAGTCCTCTGCCAGAAATCCCGCCAGGAGTATTAGGATCACAGCTCCGAGGCATATCCGGACCAGGTTGCCCTTGGTGTAGTACTGGCGGGAAGGACCTGGAGGAATGAGGAGAGGCAGGAGCAGGTGA-AGAAGCCCATCTCCAGGACCCCCTCCAAGCCACATCTTGGGCTTCTCA------------------GAGATCCTATTATCCTCTACCAGCT--GGGATGCCATTCTCTTTCCTGGAGGGTT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20067010 252 - 122678785 TGCCAATCTTCTGCCAGAATTCCCACCAGGAGTATTAGAATCACAGCTCCAAGGCATATCCGGACCAGATTGCCCTTGGTGTAGTGCTGGTGAGCAAGACCTGGAAGAATGAAGAGAGACAGGAGCAGGTGACAAAAGCCTATCTCCAGGACCCACTTCAAGGCGCATCTTGAGCTTCTCATAGCCATATCTCTCATTTGAGGTCCTATTATTCTCTGCTATCT--AGAATGCCAGTCTCCTTCCTAGAGAGTT
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I
e panTro4.chr19                  59925916 681 +  63644993 I

a score=1342667.000000
s hg38.chr19_GL949751v2_alt        933664 555 +   1002683 CCTCCCTTCCCGAGTAGGGGTCAGGGCCAGATGACCCCAATTCTCTAAGTAGCACCTCTCCCTCCTGTGCTCTCACAGGGCTCTGAGAC----AACTCCTCCCCAGACAC----AGATGCTGCCTCGTTATCTGATGCATTGCAAAAGAGAGGACAGTTATAAGGGGTGGG-GAAGAGATGGAATCTCTCTTTCTCTGACCCTTTTTAAAATCTCAACCTTCCCACCTGATCTTAATGCCCAATTCTGAACCCCATACGCTGATATTCTGCCTTT-------ACTCTACACACTGGAACCCAAGATCTGAGAGCTGCAGCCCCTGCGTAGACAAAGGAGTTGGCTTT-GGTGAAGAGACGGGTGAGAAGGAAGGGGGTCTGGAGAGGATGACTTACTCACCAGCTGGAGAGTCTGACTCCTTTGGACTGGCGGTGATACTCCTAGAAGTCTCTGGGAA-CCAAACAAAGGCTAAGTGT---GAAATGAAACCATATTCCCGCCCCCTGTCACTGTGCCTACTCCGAACACACACACACATGGGGAGGCACAATTCCACAGCATTTAAGAAAAGCAT
s panTro4.chr19                  59926597 546 +  63644993 CCTCCCTTCC-GAATAGGAGTCGGGGCCAGATGACCCCA-TCCTCTAAGTAGCAC---TCCCCTCTGTGTTCTCACAGGGCTATGAGAC----AACTCCTCCCCAGACAC----AGATGCTGCCTCGTTATCTGATGCATTGCAAAAGAGAGGACAGTTATAAGGGGTGGG-GAAGAGATGGAATTTCTCTTTCTCTGACCCTTTTTAAAATCTCAACCTTCCCACCTGATCTTAATGCCCAATTCTGAACCCCATATGCTGATATTCTGCCTTT-------ACTCTACACGCTGGAACCCAAGATCTGAGAGCTGCAGCCCCTGTGTAGACAAAGGAGTTGGCTTT-GGTGAAGAGACGGGTGAGAAGGAAGGGGGTCTGGAGAGGATGACTTACTCACCAGCTGGAGAGTCTGACTCCTTTGGACTGGCGGTGATACTCCTAGAAGTCTCTGGGAA-CCAAACAAAGGCTAAGTGT---GAAATGAAACCATATTCCCGCCCCCTGTCACTGTGCCTACTCCGAACACACACAC----GGGGAGGCACAATTCCACAGCATTTAAGAAGAGCAT
i panTro4.chr19                 I 681 C 0
s ponAbe2.chr19                  56859912 547 +  60714840 CCTCCCCTCCCAAGTAGGGGTCAGGGCCAGATGACCCCAATTCTCTAAGTAGCACCTCTCCCTCATGTGCTCTCACAGGGCTCTGAGAC----AACTCCTCCCCAGACAC----AGATGCTGCCTCGTTATCTGATGGGTTGCAAAAGAGAAGACAGTTATAAGGGGTGGG-GAAGAGATGGAATCTCTCTTTCTCTGACCCTTTTTAAAATCTCAACCTTCCCACCTGATCTTAATGCCCAATTCTGAACCCCATACGCTGATATTCTGCCTTT-------GCTCTACACACTGGAACCCAAGATCTGAGAGCTGCAGCCCCTGTGTAGACAAAGGAGTTGGCTTT-GGTGAAGAGACGGGTGGGAAGGAAGGGGGTCTGGAGAGGATGACTT----ACCAGCTGGAGAGTCTGACTCCTTTGGACTGGCGGTGATACTCCTAGAAGTCTCTGGGAA-CCAAACAAAGGCTAAGTGT---GAAATGAAACCATATTCCCGCCCCCTGCCACTGTTCCTACTCCTAACACACACAT----GGGGAGGCACAATTCcacagtatttaagaagagcat
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60660238 557 +  64156825 CGTCCCCTCCCGAGTAGGTGTCAGGGCCAGATGCCCCCAGTTCTCTAAGTAGCATCTCTCCCTCGTGTGCTCTCACAAGGCTCTGAGACAACTAACTCCGCCCCAGACAC----CGATGCCGCCTCCTTGCCTGATGTATTGCAAAAGGGAAGACAGTTATAAGGGGTGGG-GAAGAGATGGCATCTCTCTTTCTCTGACCCTTTTTAAAATCTCAACCTTCCCGCCTGGTCTTAATGCGCAATTCTGAACCCCATACGCTGATATTCTGCCTTC-------ACTCTACACACTGGAACCCAAGAGCTGAGAGCTGCAGCCCCTGTGTAGACAAAGGACTTGGCTTCGGGTGAAGAGATGGGTGAGAAGGAAGGGGGTCTGGAGAGGACGACTTACTCACCAGCTGGAGAGCCTGGCTCCTTTGGACTGGCAGTGATACTCCTAGAAGTCTCTGGGAA-CAAAAAAAAGGCTAAGTGT---GAAATGAAACCATATTCCCTTTCCC-ATCACCGTGCCTACTCCGAACACACACAC--GTGGGGAGGTCGAATTCCACAGCATTTAAGAAGCGCGT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55801261 557 +  59248254 CGTCCCCTCCCGAGTAGGTGTCAGGGCCAGATGCCCCCAGTTCTCTAAGTAGCATCTCTCCCTCGTGTGCTCTCACAAGGCTCTGAGACAACTAACTCCGCCCCAGACAC----CGATGCCGCCTCCTTACCTGATGTATTGCAAAAGGGAAGACAGTTATAAGGGGTGGG-GAAGACATGGAATCTCTCTTTCTCTGACCCTTTTTAAAATCTCAACCTTCCCGCCTGGTCTTAATGCGCAATTCTGAACCCCATACGCTGATATTCTGCCTTC-------ACTCTACACACTGGAACCCAAGAGCTGAGAGCTGCAGCCCCTGTGTAGACAAAGGACTTGGCTTCGGGTGAAGAGATGGGTGAGAAGGAAGGGGGTCTGGAGAGGACGACTTACTCACCAGCTGGAGAGCCTGGCTCCTTTGGACTGGCGGTGATACTCCTAGAAGTCTCTGGGAA-CAAAAAAAAGGCTAAGTGT---GAAATGAAACCATATTCCCTTTCCC-ATCACCGTGCCTACTCCGAACACACACAC--GTGGGGAGGTCGAATTCCACAGCATTTAAGAAGCGCAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47909240 556 +  51301725 CGTCCCCTCCTGAGGAGGTGTCAGGGCCAGATGACCCCAATTCTCTAAGTAGCATCTCTCCCTCGTGTGCTGTCACAGGACTCTGAGACAACTAACTCCGCCCCAGACAC----CGATGCTGCCTCCTTATCTGATGTATTGCAAAAGGGAAGACAGTTATAA-GGGTGGG-GAAGAGATggaatctctctttctctgaccctttttaaaatctcaaccTTCCCGCCTGATCTTAATGCGCAATTCTGAACCCCATACGCTGATATTCTGCCTTC-------ACTCTACACACTGGAACCCAAGAGCTGAGAGCTGCAGCCCCTGTGTAGACAAAGGACTTGGCTTTGGGTGAATAGATGGGTGAGAAGGAAGGGGGTCTGGAGGGGACAACTTACTCACCAGCTGGAGAGCCTGGCTCCTTTGGACTGGCGGTGATACTCCTAGAAGTCTCTGGGAA-CCaaaaaaaGGCTAAGTGT---GAAATGAAACCATATTCCCTCCCCC-GTCACTGTGCCTACTCCGAACACACACAC--GTGGGGAGGTCGAATTCCACAGCATTTAAGAAGAgcat
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47614686 554 +  50890351 CCTCCCCTCCCGAGTAGGTGTCAGGGCCAGATGACCCCAATTCTCTAAGTAGCGTCTCTCCCTCGTGTGCTCTCACAAGGCTCTGAGACAACTAACTCCACCCCAGACAC----CGATGCTGCCTCCTTATCTGATGTATTGCAAAAGGGAAGACAGTTATAA-GGGTGGG-GAAGAGATGGAA--TCTCTTTCTCTGACCCTTTTTAAAATCTCAACCTTCCCTCCTGATTTTAATGTGCAATTCTGAACCCCATACGCTGATCTTCTGCCTTC-------ACTCTACACACTGGAACCCAAGAGCTGAGAGCTGCAGCCCCTGTGTAGACAAAGGACTTGGCTTTGGGTG--GAGATGGGTGAGAAAGAAGGGGGTCTGGAGAGGACAACTTACTCACCAGCTGGAGAGCCTGGCTCCTTTGGACTAGCGGTGATACTCCTAGAAGTCTCTGGGAACCAAAAAAAAGGCTAAGTGT---GAAATGAAACCATATTCCCTCCCCCTGTCACTGTGCCTACTCCGAACACACACAC--ATGGGGAGGTCGAATTCCACAGCATTTAAGAAGAGCAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     16874 526 +    138250 CCCCCACTCCCCAGTAGGAGTCAGGGCAAGATGACCCCAATTCTCTAAGTAGCACCTCTCCCTCATGTGCCGTCACAGGGCTCTGAGAC----AACCCCTTCCCAGACAC------ATGCTGCCTTGTTAGCCAATGCGTTGCAAAAGAGAAGACAGTTATAAGGGGCGGG-GAAGAGATGGAA--TCTCTTTCTCTGACCCTTCAGAAAATCTCAACCTTCCCAGCTGAACTTAATGCCCAATTCTGAACCCCATACACTGATATTCCGCCTTC-------TCTCTACACACTGGAACCCAAGATCTCAGAGCTGCAGTTTCTGTATAGAGAAAGGAGTTGGCTTT------------GGGTGAGAAGGGAGAGGGTCTGGAGAGGATGACTC----ACCAGCTGGAGAGCCTGACTCCTTTGGACTGGTGGTGATACTCCTAGAAGTCTCTGGGAA-CCAAAAAAAGGCTAAGTGT---GAAATGAAACCATATTCCCTCCCCC-ATCACTGTCCCTACCCTTAACACACACAC---TTGGGAGGCAGAATTCCTTATTAC------AGAGCAT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20067262 526 - 122678785 CCTCCCCTCCTCACCAAGGATCAGGGCTAGATAAGCCAAATTCTCTAAATATCACTTC-----CACACACCCTCATGGGCCCCTGATGC----AACCCCTCCACACACACACACAGACACTACCTGGTTATTTGGCTAATTGCATTA-AAAAAACTGTCATAAAGGGCAGATAAAGAGATGGAATTTCTCTTTCCCTGATCCTTTAGAAATTTTCAACCTCCCCACCTGATCTTATTGCCCAATTCTGAGTTCCAAGGGCTTATATTTACCCTCCCCTTAATATTTTATATACCAGGACCCAAAATC--AGAGCTATAGCCTCTGCACAG-----------------------------GGGTGAGAATGAAGAGGGTCCAGAGAGGACCACTTACTCACCAGTTGGAGAGTCTGACCCCTTTGGAGAGACAGTGATAGTCCTAGAAGGCACTGGGAA-TCAAAAAGGA---AAGTATAAAGGAGTAAGACCATCTCCTGTAACCCTGTTCCTGC-CCCATCCCAAACACATGCCC---TTGTGAGGCAGAATCCCATGAC-TATAAGaggagcat
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=274203.000000
s hg38.chr19_GL949751v2_alt        934219 123 +   1002683 Gggccgggcacggtgcctcatgcctataatcccagcactttgggaggctgaggtaggaggctggcttgagtccaggagttcaagaccaacctgagcaacatag-aaaaaccctatctctac--aaa
s panTro4.chr19                  59927143 125 +  63644993 Gggccgggcacggtgcctcatgcctataatcccagcactttgggaggctgaggcaggaggctggcttgagtccaggagttcaagaccaacctgagcaacaaag-aaaaaccctatctctacaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56860459 123 +  60714840 gggccgggcacggtgcctcatgcctataatcccagcactttgggaggctgaggcaggaggctggtttgagtccaggagttcaagaccaacctgagcaacgtgg-aaaaaccctatctctac--aaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60660795 122 +  64156825 Gggccgggcacggtgcctcacgcctgtaatcccaacactttgggaggctgaggtgggaggctggcttgagtccaggcattgaagacctacctcagcaacatgg-aaaaaccctatctctac---aa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55801818 122 +  59248254 Gggccgggcacggtgcctcatgcctgtaatcccaacactttgggaggctgaggtgggaggctggcttgagtccaggcattgaagacctgcctcagcaacatgg-aaaaaccctatctctac---aa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47909796 122 +  51301725 gggccgggcatggtgcctcatgcctgtaatcccaacactttgggaggctgaggtgggaggctggctTGAGTCCAGGCATTGAAGACCCACCtcagcaacatgg-aaaaaccctatctctac---aa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47615240 123 +  50890351 Gggccgggcatggtgcctcatgcctgtaatcccaacactttgggaggctgaggtgggaggctggcttgagtccaggcgttgaagacccacctgagcaacatggaaaaaaccctatctctac---aa
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     17400 122 +    138250 Gggctgggcacagtggctcacccctgtaatcccagcactttgggaggctgaggcaggaggatggcttgagtccaagagttcaagaccagcctaagcaacttgg-aaaaatcctatctctac---aa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20067788   0 - 122678785 C
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=24892.000000
s hg38.chr19_GL949751v2_alt        934342 8 +   1002683 aaaataca
s panTro4.chr19                  59927268 8 +  63644993 aaaataca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56860582 8 +  60714840 aaaataca
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60660917 8 +  64156825 aaaataca
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55801940 8 +  59248254 aaaataca
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47909918 8 +  51301725 aaaataca
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47615363 8 +  50890351 aaaataca
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     17522 8 +    138250 aaaataca
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20067788 8 - 122678785 aaactaca
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=416263.000000
s hg38.chr19_GL949751v2_alt        934350 179 +   1002683 aaaattagccaggcgtggtggcacgtgccagtaatcccagctactcagtggaggctgaggcaggaagatcacctgagccctgggaggttgaggctgcagtgagccaggattgtaccactgcactctagcctgggaaacagagcgagaccctgtcc----------aaa-------------------aaaaaaaaagcaagaactgta
s panTro4.chr19                  59927276 182 +  63644993 gaaattagccaggcgtggtggcacgtgccagtaatcccagctactcagtgggggctgaggcaggaagatcacctgagccctgggaggttgaggctgcagtgagccaggattgtaccactgcactctagcctgggaaacagagcgagaccctgtcc-------aaaaaa-------------------aaaaaaaaagcaagaactata
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56860590 201 +  60714840 aaaattagccaggcgtggtggcatgtgccagtaatcccagctactcagtgggggctgaggcaggaagatcacctgagccctgggaggttgaggctgcagtgagccaggattataccactgcactctagcctgggaaacagagcaagaccttgtcc-------aaaaaaaaaaaaaaccaacaacaacaaaaaaaaaacaagaacaata
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60660925 178 +  64156825 aaaattagccaggcgtggtggcacgtgccagtaatcccagctactcagtgggggctgaggcaggaagatcacctgagccctgggaggtcgaggctgcagtgagccaggattgcaccactgcgctctagcctgggaaacagagcaagaccctgtcc-----------aa-------------------aaaaaaaaGgcgtgaactata
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55801948 179 +  59248254 aaaattagccaggcgtggtggcacgtgccagtaatcccagctactcagtgggggctgaggcaggaagatcacctgagccctgggaggtcgaggctgcagtgagccaggattgcaccactgcactctagcctgggaaacagagcaagaccctgtcc----------aaa-------------------aaaaaaaaagcgtgaactata
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47909926 180 +  51301725 aaaattagccaggcgtggtggcacgtgccagtaatcccagctactcagtgggggctgaggcaggaagatcacctgagccctgggaggtcgaggctgcagtgagccaggattgcaccactgcactctagcctgggaaacagagcaagaccctgccc---------aaaa-------------------aaaaaaaaagcatgaactaTA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47615371 189 +  50890351 aaaattagccaggcgtggtggcacttgccagtaatcctggctattcagtgggggctgaggcaggaagatcacctgagccctgggaggttgaggctgcagtgagccaggattgcaccactgcactctagcctgggaaacagagcaagaccctgtccaagaaaaaaaaaa-------------------aaaaaaaaaaaatgaactata
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     17530 179 +    138250 aaaattagcctggcatgatgacacatgcctataatcccagctactcagtgggggctgaggcaggaagatcacctgagccctgagaggttgaggctgcagtgagccaggattgctccactgcactccagcctgggaaccagagcaagaccgtatct----------caa-------------------aaaaaaaaagcatgaactaaa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20067796   0 - 122678785 C
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=497685.000000
s hg38.chr19_GL949751v2_alt        934529 206 +   1002683 gagtcaggctgtcctccagatttgaaccccaactctatcacctattagatgtcagttatctggcaagtgactcagcatctgtgagccag-ttcccc----atgtgtccaataaaattaacaagatcccttataggttgatgtgaaagtcaagataataataatggtagaaatataaagcaccgtgcttgacat---atgagcacctcatacgtg
s panTro4.chr19                  59927458 206 +  63644993 gagtcaggctgtcctccagatttgaactccaactctatcacctattagatgtcagttttctggcaagtgactccgcatctgtgagccag-ttcccc----atgtgtccaataaaattaacaagatcccttataggttgatgtgaaagtcaagataataataatggtagaaatataaagcacagtgcttgacat---atgagcacctcatacgtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56860791 206 +  60714840 gagtcaggctgtcct-cagatttgaaccccaactctatcacctattagatgtcagttatctggcaagtgactcagcatctgtgagccagtttcctc----gtgtgtccaataaaattaacaagatcccttataggttgatgtgaaagtcaaaataataataatggtagaaatataaagcacagtgcttgacat---atgagcatctcatacgtg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60661103 207 +  64156825 gagtcaggctgtcctccagatttgaaccccaactctatcacctgttagatgtgagctatctggcaagtgactcagcatctgtgagccggtttcccc----atgtgtccaataaaattaacgagatccctcataggttgatgtgaaagtcaagataataataacggtagtaatataaagcacggtgcttgacat---acgggcacctcatacgtg
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55802127 207 +  59248254 gagtcaggctgtcctccagatttgaaccccaactctatcacctgttagatgtgagttatctggcaagtgactcagcatctgtaagccggtttcccc----atgtgtccaataaaattaacgagatccctcataggttgatgtgaaagtcaagataataataacggtagtaatataaagcacggtgcttgacat---acgggcacctcatacgtg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47910106 207 +  51301725 GAGTCAGGCTGTCCTCCAGATTTGAACCCCAACTCTATCACCTGTTAGATGTGAGTTATCTGGCAAGTGACTCAGCATCTGTGAACCGGTTTCCCC----ATGTGTCCAATAAAATTAACGAGATCCCTCATAGGTTGATGTGAAAGTCAAGATAATAATAACGGTAGTAATATAAAGCACGGTGCTTGACAT---ACGGGCACCTCATACGTG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47615560 205 +  50890351 gagtcaggctgtcctccagatttgaaccccaactctatcacctgttagatgtgagctatctggcaagtgactcagcatctgtgaactggtttcccc----acatgtccagtaaaattaacgagatccct--taggttgatgtgaaagtcaagataataataacggtagtaatataaagcacggtgcttgacat---acaagcacctcatacgtg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     17709 181 +    138250 gaatcagcctgtc---cagatttgacacccaaggctatcactta---------------------------tcagcatctgtgaagcagttttccctcctatgtgtccagtaaaattaatgatatcccttataggttggtgtgaaagtcaagatgataat---ggcagtaaaacaaagcacgctgcttgacatataatgagcacctcatacatg
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20067796 206 - 122678785 gagttggg----catctagatttgaaccccagatctatccctaattagatgtggggcctctaccaaatgacttaacatctatgagccagttttccc----atctgtcaatgaaaataattataatacatcacaggttaatgtgaaatttaaatcaataacaataataacagcacaaggcacagttcttgacatatgataagcatcccacacgtg
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=2338.000000
s hg38.chr19_GL949751v2_alt        934735  6 +   1002683 ccagc-----t
s panTro4.chr19                  59927664 11 +  63644993 ccagctttttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56860997  6 +  60714840 ccagc-----t
i ponAbe2.chr19                 C 0 I 608
s calJac3.chr22_GL285922_random     17890  6 +    138250 tcagc-----t
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20068002  6 - 122678785 gcagc-----t
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47615765  0 +  50890351 C
e papAnu2.chr19                  47910313  0 +  51301725 C
e macFas5.chr19                  55802334  0 +  59248254 C
e rheMac3.chr19                  60661310  0 +  64156825 C

a score=180.000000
s hg38.chr19_GL949751v2_alt        934741 1 +   1002683 t
s panTro4.chr19                  59927675 1 +  63644993 t
i panTro4.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     17896 1 +    138250 c
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20068008 1 - 122678785 T
i canFam3.chr1                  C 0 I 29
e ponAbe2.chr19                  56861003 608 +  60714840 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47615765 0 +  50890351 C
e papAnu2.chr19                  47910313 0 +  51301725 C
e macFas5.chr19                  55802334 0 +  59248254 C
e rheMac3.chr19                  60661310 0 +  64156825 C

a score=2851.000000
s hg38.chr19_GL949751v2_alt        934742 22 +   1002683 tttttttttt-----ttttttgagaca
s panTro4.chr19                  59927676 22 +  63644993 tttttttttt-----ttttttgagaca
i panTro4.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     17897 27 +    138250 tctattcctcaagcatctcctgagaca
i calJac3.chr22_GL285922_random C 0 I 1074
e canFam3.chr1                   20068009 29 - 122678785 I
e ponAbe2.chr19                  56861003 608 +  60714840 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47615765  0 +  50890351 C
e papAnu2.chr19                  47910313  0 +  51301725 C
e macFas5.chr19                  55802334  0 +  59248254 C
e rheMac3.chr19                  60661310  0 +  64156825 C

a score=25501.000000
s hg38.chr19_GL949751v2_alt        934764 275 +   1002683 gagtctggctctgtctcccaggctggagtgcagtggcccgatgtcggctcacttcaacctccgcctcctgggctcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcgtccgccaccacgcccagctaagttttgtatttttagtagagatgggatttcaccatattggccaggttggttttgaactcctgaccttgtgatccgcccgcctaggcctcccaaagtgctgggattacaggcgtgagccactgcacccggccT
s panTro4.chr19                  59927698 275 +  63644993 gagtctggctctgtctcccaggctggagtgcagtggcccgatgtcggctcacttcaacctccgcctcctgggctcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcgtccgccaccacgcccagctaagttttgtatttttagtagagatgggatttcaccatattggccaggttggtctcgaactcctgaccttgtgatctgcccacctaggcctcccaaagtgctgggattacaggcgtgagccactgagcccagccT
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20068009  29 - 122678785 I
e ponAbe2.chr19                  56861003 608 +  60714840 I
e calJac3.chr22_GL285922_random     17924 1074 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47615765   0 +  50890351 C
e papAnu2.chr19                  47910313   0 +  51301725 C
e macFas5.chr19                  55802334   0 +  59248254 C
e rheMac3.chr19                  60661310   0 +  64156825 C

a score=23477.000000
s hg38.chr19_GL949751v2_alt        935039 18 +   1002683 CCAGCTCTCttattcctc
s panTro4.chr19                  59927973 18 +  63644993 CCAGCTCTCTTATTCCTC
i panTro4.chr19                 C 0 I 562
s rheMac3.chr19                  60661310 18 +  64156825 ccagttctcttatttctc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55802334 18 +  59248254 ccagttctcttattTCTC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47910313 18 +  51301725 CCAGCTCTCTTATTTCTC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47615765 18 +  50890351 ccagttctcttattTCTC
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20068009 29 - 122678785 I
e ponAbe2.chr19                  56861003 608 +  60714840 I
e calJac3.chr22_GL285922_random     17924 1074 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=500135.000000
s hg38.chr19_GL949751v2_alt        935057 429 +   1002683 aagtatctcctgagactcgccaggtactcagccatgtgctgggccatgggaacccaaatattaataagacattgtcaggccaggcatgacactggctgaatgcctgtaatcccagcactttgggaggccaaggtgggcggatcacctgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccgtctttactaaaaatacaaaaaatag-ctgggcatggtggcacacacctgtagtcccagctactcaggagccggagattgcagtgagctgagatcgcagagtgagccgaaatcacagatcacagagtgagcagagtgagactccgtctcaaaaacaacaacaaaaaacaaaaaaaccataagacattgtccatctgcggttcccagactattgcaggagaccaaaaagtaaagcgatt
s panTro4.chr19                  59928553 429 +  63644993 AAGTATCTCCTGAGACTCGCCAGGTACTCAACCATGGGGTGAGCCATGGGTACCCAAATATTAATAAGACATTGTCAggccaggcatgacactggctgaatgcctgtaatcccagcactttgggaggtcgaggtgggcggatcacctgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccgtctttactaaaaatacaaaaattag-ctgggcatggtggcacacacctgtagtcccagctactcaggagccggagattgcagtgagctgagatcgcagagtgagccgaaatcacagatcacagagtgagcagagtgagactccgtctcaaaaacaacaacaaaagacaaaaaaaCCataagacattgtccatctgcggttcccagactattgcaggagaccaaaaagtaaagtgatt
i panTro4.chr19                 I 562 C 0
s rheMac3.chr19                  60661328 403 +  64156825 gagtttctcctgagactggccaggtactcagccatgtgctgggccatgggaacccacatattaataagacattgtcaggccaggcatggcactggctgaacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacctgaggtcaagaaatggagaccatcctggccaacaaggtgaaaccccgtctctactaaaaatacgaaaattag-ctgggcgtggtgacgggcgcctgcagtcccagctactcaggagtcggaggttgc------------------agtgagccgaagtcacagatcccagagtgagcagagtgagactccgtctcaa----aacaac----aacaacaaaaacataagacattgtccatctgcggttctcagactattggaggagacagagaagtaaagcgatt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55802352 403 +  59248254 GAGTTTCTCCTGAGACTGGCCAGGTACTCAGccatgtgctgggccatgggaacccacatattaataagacattgtcaggccaggcatggcactggctgaacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaagaaatggagaccatcctggccaacaaggtgaaaccccgtctctactaaaaatacgaaaattag-ctgggcgtggtgacgggcgcctgcagtcccagctactcaggagtcggaggttgc------------------agtgagccgaagtcacagatcccagagtgagcagagtgagactccgtctcaa----aacaac----aacaacaaaaacataagacattgtccatctgcggttctcagactattggaggagacagagaagtaaagcgatt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47910331 420 +  51301725 GAGTTTCTCCTGAGACTTGCCAGGTACTCAGCCATGTGCTGGGCCATGGGAACCCACATATTAATAAGACATtgtcaggccaggcatggcacTGGctgaacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaagaaatgcagaccatcctggccaacaaggtgaaaccccatctcttctaaaaatacgaaaattagcctgagcgtggtggcgcacgcctgtagtcccagctactcaggagtgggaggttgcagtgagccgagatcgcagagTGAGCCGAAGTCACAGATCCCAGAGtgagcagagtgagactccgtctcaa----aacaac----aacaacaaaaacataagaCATTGTCCATCTGCGGTTACGAGATTATTGGAGGAGAC--AGAagtaaattgatt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47615783 413 +  50890351 GAGTTTCCCCTGAGACTTGCCGGGTAATCAGccatgtgctgggccatgggaacccacatattaataagacattgtcaggccaggcatggcactggctgaacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgaggtcaagaaatggagaccatcttggccaacaaggtgaaaccccgtctctactaaaaatacgaaaattag-ctgggcatggtggcgcacgcctgtagtcccagctactcaggagtcggaggttgcagtgagccgagatcgcagagtgagccgaagtcacagatcctagagtgagcagagtgagactccgtctcaa--------------aacaacaaaaacataagacattgtccatctgcggttcccagaccattggaggagac--agaagtaaagcaatt
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20068009  29 - 122678785 I
e ponAbe2.chr19                  56861003 608 +  60714840 I
e calJac3.chr22_GL285922_random     17924 1074 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=96876.000000
s hg38.chr19_GL949751v2_alt        935486 98 +   1002683 -tttttttttttt---taatacggagtctcactctgttgcccaggctggagtgctgtggtgtgatctcaggtcactgcaacctccaactcgtgagttcaagc
s panTro4.chr19                  59928982 96 +  63644993 -tttttttttaa-----aatacggagtctcactctgttgcccaggctggagtgctgtggtgtgatctcaagtcactgcaacctccaactcctgggttcaagc
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60661731 86 +  64156825 -tttttttttttc-----atatggagtctcactctgttgcccaggctgga----------gtgatctcagctcactgcaacctccaactcctgggttcaagc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55802755 87 +  59248254 -tttttttttttt----aatatggagtctcactctgttgcccaggctgga----------gtgatctcagctcactgcaacctccaactcctgggttcaagc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47910751 87 +  51301725 -tttatttttttt----aatatggagtttcagtatgttgcccaggctgga----------gtgatctcagctcactgcaatctccaactcctgggttcaagg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47616196 89 +  50890351 -tttttttttttt--taaatatggagtctcactctgttgcccaggctgga----------gtgatctcagctcactgcaacctccaactcctgggttcaagc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     18998 69 +    138250 tttttgtatttttagtagagacagggtttcaccatgttgaccaggatcgt-------------------------------ctcgatctcttgaccttgt--
i calJac3.chr22_GL285922_random I 1074 C 0
e canFam3.chr1                   20068009 29 - 122678785 I
e ponAbe2.chr19                  56861003 608 +  60714840 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=310586.000000
s hg38.chr19_GL949751v2_alt        935584 146 +   1002683 gattctcctgcctcagcctcccaagtagctggaattacaggtgcccaccaccacgcccggcta---------------------------atttttgtattttcagtagagacggggtttcagcatgttggccaggctggt------ctcctgacctcaggtgatccactcaccttggc
s panTro4.chr19                  59929078 146 +  63644993 aattctcctgcctcagcctcccaagtagctggaattacaggtgcccaccaccacgcccggcta---------------------------atttttgtattttcagtagagatggggtttcagcatgttggccaggctggt------ctcctgacctcaggtgatacactcaccttggc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56861611 146 +  60714840 gattctcttgcgtcagcctcccaagtagcgggaattacaggtgcccgccaccacgcctggcta---------------------------atttttgtattttcagtagagacggggtttcagcatgttggccaggctggt------ctcctgacctcaggtgatccacccaccttggc
i ponAbe2.chr19                 I 608 C 0
s rheMac3.chr19                  60661817 146 +  64156825 gattctcctgcctcagccttgcaagtagccggaattacaggtgcccgccaccacgcccggcta---------------------------atttttgtatttttagtagagacagggtttcaccctgttggccacactggt------cccctgacctcaggtgatccacccgccttggc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55802842 146 +  59248254 gattctcctgcctcagccttgcaagtagccggaattacaggtgcccgccaccacgcccggcta---------------------------atttttgtattttcagtagagacagggtttcaccctgttggccacactggt------cccctgacctcaggtgatccacccgccttggc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47910838 146 +  51301725 gattctcctgcctcagccttgcaagtagctggaattacaggtgcccgccaccacgcccggcta---------------------------atttttgtattttcagtagagacagggtttcaccatgttgcccaggctggt------ctcccgacctcaggtgatccacccgccttggc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47616285 146 +  50890351 gattctcctgcctcagccttgcaagtagctggaattacagttgcccgccaccacacccggcta---------------------------atttttgtattttcagtagagacagggtttcaccatgttggccagactggt------cccctgacctcaggtgatctacccgccttggc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     19067 179 +    138250 aatccaccctccttggcctcccaaagtgctgggattataggcgtgagccactgcgcccggccAATGCCCAATTCTTAACCCCCAGTAGAGatttttgtatttttagtaaagaataggtttcaccatgctggccaggctggtctcgaactccagacctcaggtgatccgcccaccttggc
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20068009  29 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=857856.000000
s hg38.chr19_GL949751v2_alt        935730 344 +   1002683 ctcccaaagtgctgggattacagacaaagcgataattttaatatactgtaaaaattgctgtaataggcagcccacaagacactgagcgagagcagaggaaaccat-cgatccagcctggacggtcaaggctttcttgaggaattgatgccatggggaaatggaagaaaaggcagagtgagtgggttgggtgcagagtcaggagaggttaggaagcctccaggagagCTTCAAGTGACTGTGTGTGGCTGAGAACAGCATGGGAA-TGCGTGGAAGGTATGCAGACAAAATTGGA------------GGGATCAACAGGGGCTGG------------ATATCTAAGCTCACAGAATAGCAAGCTGAGGAAT
s panTro4.chr19                  59929224 344 +  63644993 ctcctaaagtgctgggattacagacaaagtgataattttaatacactgtgaaaattgctgtaataggcagcccacaagacactgagcgagagcagaggaaaccat-cgatccagcctggacggtcaaggctttcttgaggaattgatgccatggggaaatggaagaaaaggcagagcgagtgggttgggtgcagagtcaggagaggttaggaagcctccagaagagCTTCAAGTGACTGTGTGTGGCTGAGAACAGCATGGGAA-TGCGTGGAAGGTATGCAGACAAAATTGGA------------GGGATCAACAGGGGCTGG------------ATATCTAAGCTCACAGAATAGCAAGCTGAGGAAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56861757 344 +  60714840 ctcccaaagtgctgggattacagacAAAGCGACAATTTTAATATACTGTGAAAATTGCTGTAATAGGCAGCCCACAAGACactgagcgagagcagaggaaaccac-cgatccagcctggacagacaaggctttcttgaggaattgacTCCATGGGGAAATGGAAGAAAAGGCAGAGCAAGTGGCTTGGGTGCAGAGTCAGGAGAGGTTAGGAAGCCTCCAGAAGAGCTTCAAGTGACTGTGTGTGGCTGAGAACAGCATGGGAA-TGTGTGGAAGGTATGCAGACAAGATTGGA------------GGGATCAACAGGGGCTGG------------ATATCTAAGCTCCCAGAACAGCAAGCTGAGGAAC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60661963 343 +  64156825 ctcccaaagtgcggggacgacag-caaagcgataattttaatacactgtgaaaattgctgtaatagacagcccacaagacactgagcaagagcagaggaagccac-caatccagcctggacggccaaggctttcgtgaggaattgaGGCCATGGGGAAATGGAAGAAAAGGCAGAGCAAGTAGATTGGATGCAGAGTCAGGAGAGGTTAGGAAACCTCCCGAAGAGATTCAAGTGACTGTGCGGGGCTGAGAACAGCGTGGGAA-TGAATGGAAGGTACGCAGACAAGATTGGA------------GGGATCAACAGTGGCTGG------------ATATCTACGCTCATGGAATAGCAAGCTGACGAAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55802988 343 +  59248254 ctcccaaagtgcggggacgacag-caaagcgataattttaatacactgtgaaaattgctgtaatagacagcccacaagacactgagcgagagcagaggaagccac-caatccagcctggacggccaaggctttcgtgaggaattgaGGCCATGGGGAAATGGAAGAAAAGGCAGAGCAAGTAGATTGGATGCAGAGTCAGGAGAGGTTAGGAAACCTCCCGAAGAGATTCAAGTGACTGTGCGGGGCTGAGAACAGCGTGGGAA-TGAATGGAAGGTACGCAGACAAGATTGGA------------GGGATCAACAGTGGCTGG------------ATATCTACGCTCATGGAATAGCAAGCTGACGAAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47910984 343 +  51301725 ctcccaaagtgtggggatgaCAG-CAAAGCGACAATTTTAATACACTGTGAAAATTGCTGTAATAGACAGCCCACAAGACACTGAGCGAGAGCAGAGGAAGCCAC-GAATCAAACCTGGACGGCCAAGGCTTTCATGAGGAATTGAGGCCATggggaaatggaagaaaaggcaGAGCAAGTAGATTGGATGCAGAGTCAGGAAAGGTTAGGAAGCCTCCCGAAGAGATTAAAGTGACCGTGTGGGGCTGAGAACAGCGTGGGAA-TGAATGGAAGGTGTGCAGACAAGATTGGA------------GGGATCAACAGTGGCTGG------------ATATCTAAGCTCATGGAATAGCAAGCTGACGAAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47616431 343 +  50890351 ctcccaaagtgcggggacgacag-caaagcgataattttaatatactgtgaacattgctgtaatagacagcccacaagacactgagcgagagcagaggaagccac-caatccagcctggacggccaaggctttcgtgaggaattgacGCCATGGGGAAATGGAAGAAAAGGCAGAGCAAGTAGATTGGATGCAGAGTCAGGAGAGGTTAGGAAGCCTCCAGAAGAGATTCAAGTGACTGTGTGGGGCTGAGAACAGCGTGGGAA-TGAATGGAAGGTATGCAGACAAGATTGGA------------GGGATCAACAGTGGCTGG------------ATATCTAAGCTCATGCAATAGCAAGCTGACAAAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     19246 345 +    138250 ctcccaaagtgctgggatgacaggcAAAGCGATCCTTGTAATATACTGTGAAATTTGCTGTAAGAGTCAGCCCACAGGACACTGAGCAAGAGCAGAGAAAACCAC-CAATGCAGCCTGGATGGTCAAGGTTTTCTTGAGGAATCGGTGCCATGGGGAAATGGAAGGAAAGGAAAAGCAAGTGGCTTGGGTGCAGAGGCAGGAGAGGATAGGGAGCCTCCAGAAGAGCTTCAGGTGCCTGTGTGTGGCTGAGAACAGCACGGGGACTGCATGGAAGGTATGCAGACAGGATTGGA------------GGGATCAGCAGCGGCTGA------------GTGTCTAAGCTCATGGAACAGCAAGCTGAACAAT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20068038 338 - 122678785 CTTACCAGGTGCTCAGCCAGCAG-ACAGGTGCATATTTTAATATACTGTGTAAATTGACATAACAGGCAGTCCATAGGA-------------CAGAGGAAGCTATACAACCCAGT---GTCATAAAAGGCTTTCCTGAGAGACTGAGGCCATGAGGAAATAGAAGGAAAAACAGAGCAAGTGGCTTGGATGCAGAATCAGGAGAAGATGCCAAGGATCCAGGAGAGCTTCATCTGACTCTGTGTGGCTAAGATTTGCATGAGGA-------------ATGAAGACAAGA--GGATCAACGGAGTCTGGGATGAGCAGTGGCTGATCTAAGGGCATTGGGCCTAAAAGCATTGAATATCAAGCTAAGAAAT
i canFam3.chr1                  I 29 I 1070
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=142241.000000
s hg38.chr19_GL949751v2_alt        936074 62 +   1002683 TGGAACTGCATCCTGAGGGTGATTGGGAGGTTCCGAACTGAAGATAGGGAAGGCTTCCATCA
s panTro4.chr19                  59929568 62 +  63644993 TGGAACTGCATCCTGAGGGTGATTGGGAGGTTCCGAACTGAAGATAGGGAAGGCTTCCATCA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862101 62 +  60714840 TGGAACTGCATCCGGAGGGTGATTGGGAGGTTCTGAACTGAAGATAGGGAAGGCTCCCATCA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60662306 62 +  64156825 TGGAACTGCATCCTGAGGGTGACTGGGAGGTTCTGAACTGAAGATAGAGAAGGACCCCATCA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55803331 62 +  59248254 TGGAACTGCATCCTGAGGGTGACTGGGAGGTTCTGAACTGAAGATAGAGAAGGACCCCATCA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47911327 62 +  51301725 TGGAACTGCATCCTGAGGGTGACTGGGAAGTTCTGAACTAAAGATAGGGAAGGACCCCATCA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47616774 62 +  50890351 TAGAACTGCATCCTGAGGGTGATTGGGAGGTTCTGAACTAAAGATAGGGAAGGACACCATCA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     19591 62 +    138250 TGGAACTGCATCCTGAGGGTGACCGGGAGGTCCTGAAGCGAAGATAGGGAAGGAGCCCACCA
i calJac3.chr22_GL285922_random C 0 I 6
e canFam3.chr1                   20068376 1070 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=522374.000000
s hg38.chr19_GL949751v2_alt        936136 310 +   1002683 C------AGAACTCCCTGGGATATgccgggcgcggtggctcatgcctccaatcccagcactttgggaggccgagacaggtggatcatgaggtcaggagttcaagaccagccttcccaagatgctgaaaccccgtctctactaaaa-tacaaaaattagccaggtgtggtggcatgcacctataatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggcagcagaggttacagtgagccgagatcgcaccactgcactccagcctgggcgacagagcaagactccacctcaaaaaaataaaaaa
s panTro4.chr19                  59929630 295 +  63644993 C------AGAACTCCCTGGGATATgccgggcgcggtggctcatgcctgcaatcccagcactttgggaggccgag----------------gtcaggagttcaagaccagcctgcccaagatgctgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggcacgcacctataatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggcagcagaggttacagtgagccgagatcgcaccactgcactccagcctgggcgacagagcaagactccacctcaaaaaaataaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862163 311 +  60714840 C------AGAACTGCCTGGGATATgccgggcgcagtggctcatgcctgcaatctcagcactttgggaggccgagacgggtggatcacgaggtcaggagttcaagaccagcctgcccaagatgctgaaaccccgtctctactaaaaatacaaaaattatccaggcgtggtggcacgcacctacaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggcggcagaggttacagtgagccgagatcgcaccactgcactccagcctgggcgacagagcaagactccacctcaaaaaaataaaaaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60662368 315 +  64156825 CAGGGTTAGAACTCTCTGGGATATgccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaagacgggtggatcccaaggtcaggagttcaacaccagcctggccaagatgctgaaaccccgtctataattaaaaaacaaaaattagccaggcgtggtggcgggcacctgtaatctcagctactg-ggaggctggggcaggagaatcgcttgaacccgggcagcagaggtaccagcgagccgagatctcgcccctgcactacatcctgggtgacagagcaagactctacctctaaaaaataaaaa-
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55803393 315 +  59248254 CAGGGTTAGAACTCTCTGGGATATgccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaagacgggtggatcccaaggtcaggagttcaagaccagcctggccaagatgctgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggcgggcacctgtaatctcagctactt-ggaggctggggcaggagaattgcttgaacccgggcagcagaggttacagcgagccgagatctcgcccctgcactacagcctgggtgacagagcaagactctacctctaaaaaataaaaa-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47911389 315 +  51301725 CAGGGTTAGAACTCTCTGAGatatgccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaagacgggtggattccaaggtcaggagttcaagaccagcctggccaagatgccgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggcacgcacctgtaatctcagctactt-ggaggctggggcaggagaatcgcttgaacccgggcagcagaggttacagtgagccaagatctcgccactgcactacagcctgggtgacagagcaagacaccacctctaaaaaataaaaa-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47616836 315 +  50890351 CAGGGTTAGAACCCTCTGGGATATgccggacgcagtggctcacgcctgtaatcccagcactttgggaggccgagatgggtggatcccaaggtcaggagttcaagaccagcctggccaagatgctgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggcgcgcacctgtaatctcagctactt-ggagtctgaggcaggagaatcgcttgaacccgggcagcagaggttacagcgagccgagatctcgccactgcactacagcctgggtgacagagcaagactccacctcaaaaaaataaaaa-
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20068376 1070 - 122678785 I
e calJac3.chr22_GL285922_random     19653   6 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=478413.000000
s hg38.chr19_GL949751v2_alt        936446 212 +   1002683 ta------gaaCTACGTGGGATCAGGTGCCTCAT-GAAAGCCAGAGTCATGTGGGCCCAGTGGAAGTATCTAACCTATTATCAGGGAATCTGTGAAGGTGT---TTAGTCTGGAAGGAAATGGAGA-TTTTCCAGGACAGGCAAGGGGAAAGAGAC--------TGAGGAAAGCGTATCTGCAGAGGCCTGGAGCGGTTAGAAGATGTGCTGTGTCCAGGTGCCTACAGTC
s panTro4.chr19                  59929925 218 +  63644993 taaaaatagaaCTATGTGGGATCAGGTGCCTCAT-GAAAGTCAGAGTCATGTGGGCCCAGTGGAGGTATCTAACCTATTATCAGGGAATCTGTGAAGGTGT---TTAGTCTGGAAGGAAATGGAGA-TTTTCCAGGACAGGCAAGGGGAAAGAGAC--------TGAGGAAAGTGTATCTGCAGAGGCCTGGAGCGGTTAGAAGATGTGCTATGTCCAGGCGCCTACAGTC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862474 218 +  60714840 taaaaatagaaCTATCTGGGATCAGGTGCCTCAT-GAAAGCCAGAGTCATGTGGGCCCAGTGGAGGTAGCTAACCTATTATCAGGGAATCTGTGAAGGTGT---TTAGTCTGGAAGGAAATGGCGA-TTTTCCAGGAAAGGCAAGGGGAAAGAGAC--------TGAGGAAAGCGTATCTGCAGAGGCCTGGAGCGGTTAGAAGATGTACTATGTCCAGGCGCCTACAGTC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60662683 207 +  64156825 ------tagaaCTCTC--GGATCAGGTACCTCAT-GAAAGCAAGAGTCCCGTGGGCCCAATGGAGATACCTCACC---TATTAGGGAATCCGTGAAGGTGT---TTAGTCTGGAAGGAAATGGGGA-TTTTCCAGGAAAGGCAAGGGGAAAGAGAC--------TGAGGAAAGCGTATCTGCAGAGGCCTGGAGTGGTTAGAAGATGTTCTAGGTCCAGGCGCCTACAGTC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55803708 207 +  59248254 ------tagaaCTCTC--GGATCAGGTACCTCAT-GAAAGCAAGAGTCCCGTGGACCCAATGGAGATACCTCACC---TATTAGGGAATCCGTGAAGGTGT---TTAGTCTGGAAGGAAATGGGGA-TTTTCCAGGAAAGGCAAGGGGAAAGAGAC--------TGAGGAAAGCGTATCTGCAGAGGCCTGGAGTGGTTAGAAGATGTTCTAGGTCCAGGCGCCTACAGTC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47911704 210 +  51301725 ------tagaactctc--GGATCAGGTACCTCAT-GAAAGCAAGAGTCCCGTGGGCCCAATGGAGATACCTCACCTGTTATCAGGGAATCCGTGAAGGCGT---TTAGTCTAGAAGGAAATGGGGA-TTTTCCAGGAAAGGCAAGGGGAAAGAGAC--------TGAGGAAAGCGTATCTGCAGAGGCCTGGAGTGGTTAGAAGATGTTCTAGGTCCAGGCGCCTACGGTC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47617151 212 +  50890351 ------TAGTACTCTCTGGGATCAGGTGCCTCGT-GAAAGCAAGAGTCCCGTGGGCCCAATGGAGATGCCTAACCTATTATCAGGGAATCCGTGAAGGTGT---TTAGTCTGGAAGGAAATGGGGA-TTTTCCAGGAGAGGCAAGGGGAAAGAGAC--------TGAGGAAAGCGTATCTGCAGAGGCCTGGAGTGGTTAGAAGGTGTACTAGGTCCAGGCGCCTACAGTC
i chlSab2.chr6                  C 0 I 92
s calJac3.chr22_GL285922_random     19659 218 +    138250 ------TAGAACCCTCTGCGATCAGGTGCCTCAT-GAAAGCCGGAGTCACGTGGGCCCAGCGGAGATAGCTAGCCTGTTATCAGGGAATCTGTGAAGGTGTTTATTAGTCTGGAAGGAAATGAC-A-CTTCCCAGGAAAAGCAAGGGGGAAGAAAC-TGCAGTGTGAGGAAGGCGTATCCGCAGAGCACTGGAGTGGTTAGA---TGTACGGTGTCCAGGCACCTACCCTC
i calJac3.chr22_GL285922_random I 6 C 0
s canFam3.chr1                   20069446 203 - 122678785 ------TAGAATTTGCTGGCATCAGGAATCGAGCAGAAAGCTAGAGTCAGGTGGACCCAGTCGAGATATCAGAACTATCCTCAAGGGATCTGC-AAGGTTT---TCTGTCTTGAGGAAAATTGATACTTTTCTAAGAAAAGGAAGGGGAAAGAGAGCTACAACATGAGGGAAGTATGT-TGCACAGAACTGCAGGAGTAAGAGGAAGCAGTGAG-----------------
i canFam3.chr1                  I 1070 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=8022.000000
s hg38.chr19_GL949751v2_alt        936658 4 +   1002683 TGTG
s panTro4.chr19                  59930143 4 +  63644993 TGTG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862692 4 +  60714840 TGTG
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60662890 4 +  64156825 TGTG
i rheMac3.chr19                 C 0 I 30
s macFas5.chr19                  55803915 4 +  59248254 TGTG
i macFas5.chr19                 C 0 I 30
s papAnu2.chr19                  47911914 4 +  51301725 TGTG
i papAnu2.chr19                 C 0 I 30
s calJac3.chr22_GL285922_random     19877 4 +    138250 TGTG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20069649 0 - 122678785 C
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617363 92 +  50890351 I

a score=332687.000000
s hg38.chr19_GL949751v2_alt        936662 157 +   1002683 TGCGTCC-GAGCATGGGCTCTACCTGGACACAGTGAGGAGC-GAGATTAAATACCTGG-ATCACAGCCGAGTCCAAA-GCCTAGGACT----------------TCATCCTGGGAGCAGTGCGTAGGGATGG----CGGTCGT-CCCGCCACAGCCTTG-----------------------------------------------------GCTCCGCCATCTTTGAAATGGCC
s panTro4.chr19                  59930147 161 +  63644993 TGCGTCC-GAGCACGGGCTCTACCTGGACACAGTGGGGAGC-GAGATTAAATACCTGG-ATCACAGCCAAGTCCAAA-GCCTAGGACT----------------TCATCCTGGGAGCAGTGCGTAGGGATGGGTGGCGGTCGT-CCCGCCACAGCCTTG-----------------------------------------------------GCTCCGCCATCTTTGAAATGGCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862696 162 +  60714840 TGCGTCC-GAGCACGGGCTCTACCTGGACACAGTGGGGAGC-AAGATTAAATACCTGGAATCACAGCCAAGTCCAAA-GCCTAGGACT----------------TTATCCTGGGAGCAGTGCGTAGGGATGGGTGGCGGTCTT-CCCGCCACAGCCTTG-----------------------------------------------------GCGCCGCCATCTTTGAAATGGCC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60662924 159 +  64156825 TGCGTCC-AAGCGCGGGCTCTGCCTGGACACAGCGGGGAGC-AAGATTAAATACTCGG-ATCACAGCCAAGTCCAAAGGCCTAGAACT----------------TTATCCTGGGAACAGTGTGTAGGGATAGCTGGCGGTGTT-CCCACCACAGCCTTG-----------------------------------------------------GCC---CCGTCTTTGAAATGGCC
i rheMac3.chr19                 I 30 C 0
s macFas5.chr19                  55803949 162 +  59248254 TGCGTCC-GAGCGCGGGCTCTGCCTGGACACAGCGGGGAGC-AAGATTAAATACTCGG-ATCACAGCCAAGTCCAAAGGCCTAGGACT----------------TTATCCTGGGAACAGTGTGTAGGGATAGCTGGCGGTGTT-CCCACCACAGCCTTG-----------------------------------------------------GCCCCGCCGTCTTTGAAATGGCC
i macFas5.chr19                 I 30 C 0
s papAnu2.chr19                  47911948 162 +  51301725 TGCGTCC-GAGCACGGGCTCTACCTGGACACAGTGGGGAGC-AAGATTAAATACTCGG-ATCACAGCCCAGTCCAAAGGCCTAGGACT----------------TTATCCTGGGAGCAGTGCGTAGGGATAGCTGGCGGTGTT-CCCACCACAGCCTTG-----------------------------------------------------GCCCCGCCGTCTTTGAAATGGCC
i papAnu2.chr19                 I 30 C 0
s chlSab2.chr6                   47617455 162 +  50890351 TGCGTCC-GAGCACGGGTTCTACCTGGACACAGTGGGGAGG-AAGATTAAATACTCGG-ATCACAGCCCAGTCCAAAGGCCTAGGACT----------------TTACCCTGGGAGCAGTGCGTAGGGATAGCTGGCGGCGTT-CCCGCCACAGCCTTG-----------------------------------------------------ACCCCGCCGTCTTTGAAATGGCC
i chlSab2.chr6                  I 92 C 0
s calJac3.chr22_GL285922_random     19881 232 +    138250 TGTGGCTAGACCATGGGCTCTATATGGACACAGGGAGGAGC-AAGATTAAATCCTTGG-ATCACAGCCAAGTCAGAAGGGCGCAGTCTTCCCATCACAGCCTCGTTATCCTGGGAGCGGTGCGTAGGGAAGGGCAGCAGTCTT-CCCATCACAGCCTTGTTATCCTGGGAGTGGTGCATAGGGAAGGGCAGCAGTCTTCCCATCACAGCCTTGCTCTGCCATCTTTGAAATGGCC
i calJac3.chr22_GL285922_random C 0 I 306
s canFam3.chr1                   20069649 115 - 122678785 ------------------------------CAATGGGGGACAAAGCTTACACACATGC-ATCAGAGCAAAGTCAGAA---------------------------T---------AGCAGCGTGTAGGAATGAGCAATGGTCTTCCCCATCAGCCCCTTG-----------------------------------------------------GCTCCACCATCTTTGAAATGGCA
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=300341.000000
s hg38.chr19_GL949751v2_alt        936819 119 +   1002683 CCATCACCCAAAACGCTCCTCCTTCTGAAC-CCCAGAGCTCCACTCTGCACCCATGCTCTAGCCTCACACCAAGGACTTTCTTGGTAAGAGACGGACAGTTCGGTGAAGT-GATTAAAAGC
s panTro4.chr19                  59930308 118 +  63644993 C-ATCACCCAAAATGCTCCTCCTTCTGAAC-CCCAGAGCTCCACTCTGCACCCATGCTCTAGCCTCACACCAAGGACTTTCTTGGTAAGAGACGGACAGTTCGGTGAAGT-GATTAAAAGC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862858 119 +  60714840 CCATTACCCAAAATGCTCCTCCTTCTGAAC-CCCAGAGCTCCACTCTGCACCCATGCTCTAGCCTCACACCAAGGACTTTCTTGGGAAGAGACAGACAGTTCAGTGGAGT-GATTAAAAGC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60663083 119 +  64156825 CCAATACCCAAAATGCTCCTCCTCCTGAAC-CCCAGAGCTCCCCTCTGCGCCCATGCTCTATCCTCACACCGAGGACTTTCCTGGGAAGAGACAGACAGTTCCGTGAAGC-GATTAAAAGC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55804111 119 +  59248254 CCAATACCCAAAATGCTCCTCCTCCTGAAC-CCCAGAGCTCCCCTCTGCGCCCATGCTCTATCCTCACACCGAGGACTTTCCTGGGAAGAGACAGACAGTTCCGTGAAGC-GATTAAAAGC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47912110 119 +  51301725 CCATTACCCAAAATGCTCCTCCTCCTGAAC-GCCAGAGCTCCCCTCTGCGCCCATGCTCTATCCTCACACCAAGGACTTTCTTGGGAAGAGACAGACAGTTCCGTGAAGC-GATTAAAAGC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47617617 119 +  50890351 CCGTTACCCAAAATGCTCCTCCTCCTGAAC-CCCAGAGCTCCCCTCTGCGCCCATGCTCCGTCCTCACACCGAGGACTTTCTTGGGATGAGACAGACAGTTCCGTGAAGC-GATTAAAAGC
i chlSab2.chr6                  C 0 T 5744
s calJac3.chr22_GL285922_random     20419 119 +    138250 CCATTACCCAAAATGCTCCTCCTCCTGAAC-CCCAGAACTCCACTCCACAGCCATGCTCCATCCTCACACCAAGGACCTTCTTGGGAAGAGACAGACAGTGTGGTGAAGC-GATGAAAAGC
i calJac3.chr22_GL285922_random I 306 C 0
s canFam3.chr1                   20069764 119 - 122678785 -CATTATCCAAAAACCTTATCTGTCTGCACACTCAGAGCCCACCTCCAT-CCCATCCTTGATCCTCAAACCAAGGACTTTATTTGGAAGAGTCAAGTTATCTCCTGAAGCAGACTTAAAGC
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=606449.000000
s hg38.chr19_GL949751v2_alt        936938 299 +   1002683 CTACAGGCTTAGATAATGGAAGAGAGAGCTCCGTCCTCACACTCCTTTCTGCTGAGCATGAAATGCCTGGTTACTCACCAGTTGTGAAGACTTCGTTTGTGAATGAGACGGTCAGTTCAGCGGTGGCTTCTGAGAATTCT---AAGAA---------AGCAA----------AACAATGTTAGGTCTTCCCCGTGGTTCCCTATATCCTCTAGATATCTCCATTCCCCTTTTGAGATATCTAGGCTCCCTGAAACCCCTT--TCTCTG--ACACACTGCACAGACACTGAAGACAGACAAATTCGAAAGG-TGTAAGACTTATCTT---
s panTro4.chr19                  59930426 308 +  63644993 CTACAGGCTTAGATAATGGAAGAGAGAGCTCCGTCCTCACACTCCTTTCTGCTGAGCATGAAATGCCTGGTTACTCACCAGTTGTGAAGACTTTGTTTGTGAATGAGATGGTCAGTTCAGCGGTGGCTTCTGAGAATTCT---AAGAATTATAAGAAAGCAA----------AACAACGTTAGGTCTTCCCCGTGGTTCCCTATATCCTCTAGATATCTCCATTCCCCTTTTGAGATATCTAGGCTCCCTGAAACCCCTT--TCTCTG--ACACACTGCACAGACACTGAAGACAGACAAATTCGAAAGG-TGTAAGACTTATCTT---
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56862977 310 +  60714840 CTATAGGCTTAGATAATGGAAGAGAGAGCTCCGTCCTCACACTCCTTTCTGCTGAGCATGAAATGCCTGGTTACTCCCCAGTTGTGAAGACTTTGTTTGTGAATGAGACGGTCAGTTCAGCGGTGGCTTCTGAGAATTTT---AAGAATTATAAGAAAGCAA----------AACAATGTTAGGTCTTCCCCGTGGTTCCCTATATCCTCTAGATATCTCCATTCCCCTTCTGAGATATCTAGGCTCCCTGAAACCCCTT--TCTCTGACACACACTGCACAGACACTGAAGACAGACAAATTCGAAAGG-TGTAAGACTTATCTT---
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60663202 310 +  64156825 CTATAGGCTTAGATAGTGGAAGAGAGAGCTCCGTCCTCACACTCCTTTCTGCTGAGCATGAAATGCCTGGTGACTCACCAGTTGTGAAGACTTTGTTTGTGAGTGAGACGGTCAGTTCAGTGGTGGCTTCTGAGAATTCT---AAGAATTATAAGAAAGCAA----------AACAATGTGAGGTCTTCCCCGTGGTTCCCTATATCCTCTAGATACCTCCATTCCTCTTCTGAGATGTCTAGGCTCCCTGAAACCCCTT--TCTCTGACACACACAGCGCAGACGCTGAATACAGACAGATTTAAAAGG-TGTAAGACTTATCTT---
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55804230 310 +  59248254 CTATAGGCTTAGATAGTGGAAGAGAGAGCTCCGTCCTCACACTCCTTTCTGCTGAGCATGAAATGCCTGGTGACTCACCAGTTGTGAAGACTTTGTTTGTGAGTGAGACGGTCAGTTCAGTGGTGGCTTCTGAGAATTCT---AAGAATTATAAGAACGCAA----------AACAATGTGAGGTCTTCCCCGTGGTTCCCTATATCCTCTAGATACCTCCATTCCTCTTCTGAGATGTCTAGGCTCCCTGAAACCCCTT--TCTCTGACACACACAGCGCAGACGCTGAATACAGACAGATTTAAAAGG-TGTCAGACTTATCTT---
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47912229 310 +  51301725 CTATAGGCTTAGATAGTGGAAGAGAGAGCTCCGTCCTCACACTCCTTTCTGCTGAGCATGAAATGCCTGGTGACTCACCAGTTGTGAAGACTTTGTTTGTGAGTGAAACGGTCAGTTCAGTGGTGGCTTCTGGGAATTCT---AAGaattataagaaagcaa----------aacaatgtGAAGTCTTCCCCGTGGTTCTCTATATCCTCTAGATACCTCCATTCCTCTTCTGAGATGTCTAGGCTCCCTGAAACCCCTT--TCTCTGACACACACAGCGCAGACGCTGAATACAGACAGATTCGAAAGG-TGTAAGACTTATCTT---
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     20538 315 +    138250 CTCTAGGCTTAGGCAGTGGAAGAGAGAGCTCTGTCCTCACGCTCCTTTCTGCTGAGCATGCAATGCCTGGTTACTCACCAGTTGTGAAGACTTTGTTTGTGAGTGAGATGATCAGTTTACTGGTGGCCTCTGGGAATGCTCAGGAGAATTACAAGAAAGCAA----------AACAATGTTAGGTCTTCCTCGTGGCTCCCTATATCCCCTAGATACCTCCATTGCCCTTGTGAAATATCTAGGCTCCCTGAAACCCCTTTCTCTCTGACGGACACTGCACAGACATTGAAGACAGACAAATTCAAAATG-TATAAGACttttttt---
i calJac3.chr22_GL285922_random C 0 I 8591
s canFam3.chr1                   20069883 305 - 122678785 CTACGGCCTTAGATGATGAAAGAGAAA--TCTATCTACATACTCCTTTCTACTGGGTTCCGAGTGCCTGATTACTCACCAATTGTGGAGCTCTTGTTGAGGTGCAAGTTGCTCTGTTTTCTGGAGGCTTCTGGGAATTCT---AAG-----CAAGAGGGTAATGAGAACATGGATAACATCAGATCTTCCCAGTGAGTCCCTAC------------TCTGCATACCCTTTCTGAGCTGTCTGGGCTTCCCAGAACCCCTT--TCTCTGGCACACACTGCATGAACACTGAGGAGAGAAAAAAGCAGAGGGCTATAAGACATGTTCTCTT
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=273656.000000
s hg38.chr19_GL949751v2_alt        937237 217 +   1002683 ----CCATGACCGGCTTAGTAAGAAGCAGatccgttcagcaattgatagacacttggttttttttccacgttttgctgttatgaatattgctgctgtgaacattgacgtacaggtttttgtgtgaacataagttttctgttctctt----------gggtacacacccaggggtggtggaatcactgggtcatacagtaactctgtgttttac------------tttttgaagaactaccag
s panTro4.chr19                  59930734 216 +  63644993 ----CCATGACCGGCTTAGTAAGAAGCAGatccgttcagcaattgatagacccttgggtttttt-ccacgttttgctgttatgaatattgctgctgtgaacattgacgtacaggtttttgtgtgaacataagttttctgttctctt----------gggtacacacccaggggtggtggaatcactgggtcatacagtaactctgtgttttac------------tttttgaagaaccaccag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56863287 211 +  60714840 ----CCATGACTGGCTTAGTAAGAAGCAGatccgttcatcaattgatagacacttgggttt----ccacgttttgttgttatgaatattgctgctgt-aacactgacatacaagtttttgtgtgaacataagttttctgttctctt----------gggtacacacccaggtgtggcagaattactgggtcatacagtaactctgtgttttac-------------ttttgaagaactaccag
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60663512 223 +  64156825 ----CCATCGCCGGCTGAGTAAGAAGCAGatctgttcatcagttgctgggcacttgggtttttt-ccacgttttgctattgtgaatattgctgctgtgaacattcacatacaagtttttgtgtgatcataagttttctgttctctt----------gggcacacacccaggtgtgattgaatcactgggtcatagagtaactctgtgttttacttttta-----ctttttgaaaaactaccag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55804540 223 +  59248254 ----CCATCGCCGGCTGAGTAAGAAGCAGatctgttcatcagttgctgggcacttgggtttttt-ccacgttttgctattgtgaatattgctgctgtgaacattcacatacaagtttttgtgtgatcagaagttttctgttctctt----------gggcacacacccaggtgtgattgaatcactgggtcatagagtaactctgtgttttacttttta-----ctttttgaaaaactaccag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47912539 223 +  51301725 ----CCATCGCCGGCTGAGTAAGAAGCAGATccgttcatcagttgatgggcacttgggttttTC-CCacattttgctattatgaatattgCTGCTGTGAACGTtcacatacaagtttttgtgtgatcATAAGTTTTCTGTTCTCTT----------GGGTACACACCCAGGGCTGATTGAATCACTGGGTCATAGAGTAActctgtgttttacttttta-----ctttttgaaaaactaccag
i papAnu2.chr19                 C 0 C 0
s canFam3.chr1                   20070188 237 - 122678785 CTATCTCTCAGTGGGTGCATAAGAAATGAatccattcatccactgatggacattacattatctc-ctttttggggctactatgaataatgttgccatgaacatttatgtacacatttt--tatgaacatgcattttttaatttcttaatttggggggagcatatagctacaagtg---gaatagctgagtcctgtgataattttatgatatggtcataggatattcttttgaggaaatgctga
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     20853 8591 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=113444.000000
s hg38.chr19_GL949751v2_alt        937454 109 +   1002683 act-tctttcttttttttct-------------------------tt--tttttttttttttgagacagagtctcattctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccacctcct
s panTro4.chr19                  59930950 102 +  63644993 act-tgtttctttttttt----------------------------------ttttttttttgagacggagtctcgttctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccacctcct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56863498  91 +  60714840 act-ttt---------------------------------------------ttctttttttgagacgaagtctcattctgttgcccaggctggagtacagtggcgcaatctcagctcactgcaacctccacctcct
i ponAbe2.chr19                 C 0 I 9605
s rheMac3.chr19                  60663735 131 +  64156825 actgtttttctttcttttcttttcttttttttctttttctt----tt--tttttttttttttgagacggagtctcgttctgttgcccaggctggagtgcaatggcgcgatctcagctcactgcaagctccgcctccc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55804763 135 +  59248254 actgTttttctttcttttcttttcttttttttctttttctttttctt--ttcttttttttttgagacggagtctcgttctgttgcccaggctggagtgcaatggcgcgatctcagctcactgcaagctccgcctccc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47912762 137 +  51301725 actgtttttctttcttttctttttttttttttctttttctttttctttgtttttttttttttgagacggagtctcgttctgttgcccaggctggagtgcagtggcgcgatctcagctcgctgcaacctccacctccc
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20070425   0 - 122678785 C
e calJac3.chr22_GL285922_random     20853 8591 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=267724.000000
s hg38.chr19_GL949751v2_alt        937563 205 +   1002683 gggttcaagcgattctcctccctcagcctcccgagtagctgggattacaggcacctgccatcacgcctggccaacttttttttttgtactttagtagaggcggggtttcaccatgttggccaggatggtctcgatctcctgacctcgtgatccaccctccttggcctctcaaagtgctgggattacaggctgcgcctggccacag
s panTro4.chr19                  59931052 205 +  63644993 gggttcaagcgattctcctccctcagcctcccgagtagctgggattacaggcatctgccaccacgcctggccaacttttttttttgtactttagtagaggcggggtttcaccatgttggccaggatggtctcgatctcctgaccttgtgatccaccctcctcagcctctcaaagtgctgggattacaggctgcgcctggccacag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873194 204 +  60714840 gggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccacgcccggccaac-tctttttttgtactttagtagaggcggggtttcaccatgttggcccggatggtctcaatctcctgacctcatgatccaccctcctcggcctctcaaagtgctgggattacaggctgcgcctggccacag
i ponAbe2.chr19                 I 9605 C 0
s rheMac3.chr19                  60663866 204 +  64156825 gggttcacgcgattctcctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggccaac-tttttttttgtactttagtagagattgggtttcaccatgtcggccaggatggtctcgatctcctgaccttgtgatccaccctcctcagcctctcaaagtgctgggatgacaggctgcgcctggccacag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55804898 204 +  59248254 gggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggccaac-tttttttttgtactttagtagagattgggtttcaccatgtcggccaggatggtctcgatctcctgaccttgtgatccaccctcctcagcctctcaaagtgctgggatgacaggctgcgcctggccacag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47912899 204 +  51301725 gggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgcccgccaccatgcctggccaac-tttttttttgtactttagtagagattgggtttcaccatgtcggccaggatggtctcgatctcctgaccttgtgatccaccctcctcagcctctcaaagtgctgggattacaggctgcgCCTGGCCACAG
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20070425   0 - 122678785 C
e calJac3.chr22_GL285922_random     20853 8591 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=174098.000000
s hg38.chr19_GL949751v2_alt        937768 121 +   1002683 actgtttttcaaagcagctgcaccattttatattcccaccagcaatataagaaggttc------ttccaaatcctcaccaatacttcttgt------------------ccgtttgttttgttttaaaaatcatagtcatcctag
s panTro4.chr19                  59931257 121 +  63644993 actgtttttcaaagcagctgcaccattttatattcccaccagcaatacaagaaggttc------ttccaaatcctcaccaatacttcttgt------------------ccgtttgttttgttttaaaaatcatagtcatcctag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873398 120 +  60714840 actgtttttcaaagcagctgcaccattttatattcccaccagcaatacaagaaggttc------ttccaaat-ctcaccaatacttctcgt------------------ctgtttgttttgttttaataatcacagtcatcctag
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664070 121 +  64156825 actgtttttcaaggcagctgcaccattttatattcccaccagcaatacaggaaagttc------ttccaaatcctcaccaatacttcctgt------------------ccgtttgttttattttaacaatcacagccatcctag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55805102 119 +  59248254 actgtttttcaaggcagctgcaccattttatattcccaccag--atacaggaaggttc------ttccaaatcctcaccaatacttcctgt------------------ccgtttgttttattttaacaatcacagccatcctag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47913103 121 +  51301725 ACTGTTTTTCAaggcagctgcaccattttatattcccaccagcaatacagGAAGGTTC------TTCCAAATCCTCACCAATACTTCTTGT------------------ccgtttgttttattttaataatcacaGCCATCCTAG
i papAnu2.chr19                 C 0 C 0
s canFam3.chr1                   20070425 145 - 122678785 actgttttccacagcagcaacatgatgtttcattcccatcaacaatgtgtgggggttccaatttccccacatcctcaacaatacctgttgttgtacttaattattactattattattattattattattattattgccattctgg
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     20853 8591 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=127637.000000
s hg38.chr19_GL949751v2_alt        937889 78 +   1002683 ttggcatggtgaattttatggtatgtgaattatatctcagtttgaataataagatgtggatccatgtcttcgtgagcc
s panTro4.chr19                  59931378 78 +  63644993 ttggcatggtgaattttatggtatgtgaattatatctcagtttgaataataagatgtggatccatgtcttcgtgagct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873518 78 +  60714840 ttggcatggtgaattttatggtatgtgaattagatctcaatttgaataatcagatgtggatccatgtcttcatgagct
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664191 78 +  64156825 ttggcatgGTCCATTTTATGGTATGTGGATTATATCTCAGTTTGAAGAAGAATAAGTGGATCCACATCTTCACGAGCT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55805221 78 +  59248254 ttggcatgGTCCATTTTATGGTATGTGGATTATATCTCAGTTTGAAGAAGAATAAGTGGATCCACATCTTCACGAGCT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47913224 78 +  51301725 TTAGCATGGTACATTTTATGGTATGTGGATTATATCTCAATTTGAAGAAGAATAAGTGGATCCGCATCTTCATGAGCT
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     29444 78 +    138250 TCGGCATGGTAAATTTTATGGTATGTGAGTTATAACTGAATTTGAAGAAGACGACGTGGGCCAGCATTTTCATGAGCT
i calJac3.chr22_GL285922_random I 8591 C 0
s canFam3.chr1                   20070570 71 - 122678785 tgggtgtgatgaatttcatggtttGTGA--CATATCTAAATTTAAAAAATAAGTAgagg-----tgccttggtggttc
i canFam3.chr1                  C 0 I 70
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=501.000000
s hg38.chr19_GL949751v2_alt        937967 1 +   1002683 t
s panTro4.chr19                  59931456 1 +  63644993 t
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873596 1 +  60714840 t
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664269 1 +  64156825 C
i rheMac3.chr19                 C 0 I 3
s macFas5.chr19                  55805299 1 +  59248254 C
i macFas5.chr19                 C 0 I 334
s papAnu2.chr19                  47913302 1 +  51301725 C
i papAnu2.chr19                 C 0 I 347
s calJac3.chr22_GL285922_random     29522 1 +    138250 C
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20070641 70 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=51255.000000
s hg38.chr19_GL949751v2_alt        937968 32 +   1002683 aGAGGAAGAATGAGCTCGTGTTAGCCTCAGAA
s panTro4.chr19                  59931457 32 +  63644993 aGAGGAAGAATGAGCTCGTGTTAGCCTCAGAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873597 32 +  60714840 aCAGGAAGAATGAGCTCGCGTTAGCCTCAGAA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664273 32 +  64156825 TTAGGAAGAATGAGCTCGTGTTAGCCTCAGAA
i rheMac3.chr19                 I 3 I 354
s macFas5.chr19                  55805634 32 +  59248254 aaaaaaagaaTGAGCTTGTGTTAGCCTCAGAA
i macFas5.chr19                 I 334 C 0
s papAnu2.chr19                  47913650 32 +  51301725 aaaaaaagaatgagcttgTGTTAGCCTCAGAA
i papAnu2.chr19                 I 347 C 0
s calJac3.chr22_GL285922_random     29523 32 +    138250 AGAGGAAAAATGAGCTCATATTAGCCTCTGAA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20070641 70 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T

a score=27271.000000
s hg38.chr19_GL949751v2_alt        938000 24 +   1002683 CACGGGATCTCCACCTTCCAACTT
s panTro4.chr19                  59931489 24 +  63644993 CACGGGATCTCCACCTTCCAACTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873629 24 +  60714840 CACGGGATCGCCACCTTCCTACTT
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55805666 24 +  59248254 CATGGGATCTCCACCTTCCTACTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47913682 24 +  51301725 CATGGGATCTCCACCTTCCTACTT
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     29555 24 +    138250 CACAGGATATCTACCTTCCTACTA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20070641 70 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T
e rheMac3.chr19                  60664305 354 +  64156825 I

a score=30953.000000
s hg38.chr19_GL949751v2_alt        938024 84 +   1002683 AGGCCAttttctttttttcttttt-----ttttttttttttgagacagagtcttactc-tgtcgtccaggctggagtgcagtggtgcaat
s panTro4.chr19                  59931513 89 +  63644993 AGGCCATTTTCtttttctctttttcttttttttttttttttgagacagagtcttactc-tgtcgtccaggctggagtgcagtggcgcaat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873653 85 +  60714840 AGGCCAttttcttttttttttttt----tttttttttttttgagacagagtctcactc-tgtcgtccgggctgaagtgcagtggcgcgat
i ponAbe2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     29579 69 +    138250 AGACCAtt---------------------ttttttttttttgagatggagtttcgctcttgttgcccaggctggagtgtaatggcacaat
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20070641 70 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T
e papAnu2.chr19                  47913706  0 +  51301725 C
e macFas5.chr19                  55805690  0 +  59248254 C
e rheMac3.chr19                  60664305 354 +  64156825 I

a score=99251.000000
s hg38.chr19_GL949751v2_alt        938108 234 +   1002683 ctcggctcactgcaagctctgcctcccgggttcacaccattatcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcctggctaatttttttgtattttcagtagagatggggtttcaccgtgttagccaggatggtct---cgatctcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggaatacaggcgtgagccaccgcgcccggcc
s panTro4.chr19                  59931602 234 +  63644993 ctcggctcactgcaagctccgcctcccgggttcacaccattgtcctgcctcagcctcccgagtagctggaactacaggcacccgccaccacgcctggctaatttttttgtattttcagtagagatggggtttcaccgtgttagccaggatggtct---tgatctcctgaccttgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873738 233 +  60714840 cttggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcctggctaa-ttttttgtatttttagtggagatggagtttcaccgtgttggccaggatggtct---cgatttcctgacctcgtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacacagcc
i ponAbe2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     29648 233 +    138250 ctcggctcactgcaacctctgccttctgggttcaggcaattctcctgcctcagcctcctgagtagctgggattacaggcgtgcaccaccatgcccagctaa-ttttttgtatttttagtagagacggggtttcaccatgttgaccagggtggtct---ggatctgttgacctcgtgatccacccgcctcggcctcccaaagtgctgggtttacaggcttgagccaccgcgcctggcc
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20070711 142 - 122678785 ccctgctcagtggggactctatctccc--------------------tctccatctccc-----tctgtgatctc-----------------tctggctct--------cattctcaa-agtgaatcagtatatctgtacaaGCTCAG-TGGTTTATGCCATCTTCTGAGTGTAAGAGGCTCC--------CCTCCTTA----------TTA-------------------------
i canFam3.chr1                  I 70 C 0
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47617736 5744 +  50890351 T
e papAnu2.chr19                  47913706   0 +  51301725 C
e macFas5.chr19                  55805690   0 +  59248254 C
e rheMac3.chr19                  60664305 354 +  64156825 I

a score=547849.000000
s hg38.chr19_GL949751v2_alt        938342 234 +   1002683 AGGCCATTTTCTTAACCAGGGGCCTCC-------TGAGGCCACCAAAATA-TTCCTGAACTGCCTCAGCTGATAAATACGAAGCTCTTGT-TGCAGTGGGTACTATCCTGG-GAGTCTTTTTATGGTGGAACCAGCTTGGAAAAAACTAGTTTATGCTCAGCTCTCGGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTATTTCTCTTCGTGTGAGATGCATTAATAAACCTT-----TTTT
s panTro4.chr19                  59931836 239 +  63644993 AGGCCATTTTCTTAACCAGGGGCCTCC-------TGAGGCCACCAAAATA-TTCCTGAACTGCCTCAGCTGATAAATACGAAGCTCTTGT-TGCAGTGGGTACTATCCTGG-GAGTCTTTTTATGGTGGAAGCAGCTTGGCAAAAACTAGTTTATGCTCAGCTCTCGGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTATTTCTCTTCGTGTGAGATGCATTAATAAACCTTGTTTTTTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56873971 237 +  60714840 AGGCCATTTTCTTAACCAGGGGCCTCC-------TGTGGCCACCAAAATATTTCCTGAACTGCCTCAGCTGATAAATATGAAGCTCTTGT-GGTGGTGGGTACTATCCTGG-GAGTCTTTTTATGGTGGAACCAGCTTGGCAACAACTACTTTATGCTCAGCTCTCTGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTACTTCTCTTCCTGTGAGATGCATTAATAAACCTTGT---TTCT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664659 237 +  64156825 AGGCCGTTTTCTTAACCAGGGACCTCC-------TGTGGCCACCAAAATGTTTCCTGAACTGCCTCGGCTGATAAATATGAAGCTCTTGT-GGTGGTGGGTACCATCCTGG-GAGTCTTTTTATGGTGGACCTAGCTCGGCAAAACCTAGTTTATGCTCAGCTCTCTGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTACTTCTCTTCCTGTGAGATGCATTAATAAGCCTTGT---TTCT
i rheMac3.chr19                 I 354 C 0
s macFas5.chr19                  55805690 237 +  59248254 AGGCCATTTTCTTAACCAGGGACCTCC-------TGTGGCCACCAAAATGTTTCCTGAACTGCCTCGGCTGATAAATATGAAGCTCTTGT-GGTGGTGGGTACCATCCTGG-GAGTCTTTTTATGGTGGACCTAGCTCGGCAAAACCTAGTTTATGCTCAGCTCTCTGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTACTTCTCTTCCTGTGAGATGCATTAATAAGCCttgt---ttct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47913706 229 +  51301725 AGGCCATTTTCTTAACCAGGGACCTCC-------TGTGGCCACCAAAATGTTTCCTGAACTGCCTCGGCTGATAAATATGAAGCTCTT----GTGGTGGGTACCATCCTGG-GAGTCTTTTTATGGTGGACCTAGCTCTGCAAAACCTAGTTTATGCTCAGCTCTCTGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTA-----CTTCCTGTGAGATGCATTAATaagccttgt---ttct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47611992 219 +  50890351 AGGCCATTTTCTTAACCAGGGACCTCC-------CGTGGCCACCAAAATGTTTCCTGAACTGCCTCGGCTGATAAATATGAAGCTCTTGT-GGTGGTGGGTACCATCCTGG-GAGTCTGTTTACGGTGGACC-------------CCTAGTTTATGCTCAGCTCTCTGTGGCATAATGAGAGTGTGGGTATTATTTGGTCTTTGTTA-----CTTCCTGTGAGATGCATTAATAAGCCTTGT---TTCT
i chlSab2.chr6                  T 5744 C 0
s calJac3.chr22_GL285922_random     29881 206 +    138250 AGACCATTTCCTTAACCAGGGAGCTTC-------TGTAGC-----------TTC-----------------ATACATATTAAGCCCTTGT-TGCAGTGGGTACCATTTTGG-GAGTCTTTTTATGGTGGAACCAGCTCAGCAAAACCTAATTTATGCTCAGCTGTC--TGGCATAATGATAGTGTGGGTATTATTTGGTCTTTGTTCCTTCTCTTCCTGTGAGATGCATTAATAAGCCTTGT---TTt-
i calJac3.chr22_GL285922_random C 0 I 2030
s canFam3.chr1                   20070853 233 - 122678785 AGGCCATTTTCTTATCCAGGGACTGCCCTGGTTACATGGACACCAAAACATTTCCTAAAAACCTTCAACCTATAAATATGTAGCTCCTATCAAGAGTGGGGACTATCTTGGTGGGCCTTTTTATGGTAAAACCAGCTCATCAAAGCCTAC-----------CTATCTGTGGTATAATAAGAGCTTGCATATTATTTGTTCTCTGTTATTTCTCTTCCTGTAAGTCTCATTTATAAATTTTGT---TT--
i canFam3.chr1                  C 0 I 8353
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=6248.000000
s hg38.chr19_GL949751v2_alt        938576 8 +   1002683 Tttttttt
s panTro4.chr19                  59932075 8 +  63644993 Tttttttc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56874208 8 +  60714840 tttttttt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664896 6 +  64156825 TTTTTt--
i rheMac3.chr19                 C 0 I 6
s macFas5.chr19                  55805927 6 +  59248254 tttttt--
i macFas5.chr19                 C 0 I 953
s papAnu2.chr19                  47913935 6 +  51301725 tttttt--
i papAnu2.chr19                 C 0 I 6
s chlSab2.chr6                   47612211 6 +  50890351 TTtttt--
i chlSab2.chr6                  C 0 I 3
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I

a score=72712.000000
s hg38.chr19_GL949751v2_alt        938584 67 +   1002683 caattaaaatt-----tcagttccagaatccatgtgcaggacgtgcaggtttgttacataggtaaacgtgtg
s panTro4.chr19                  59932083 67 +  63644993 caattaaaatt-----tcagttccagaatccatgtgcaggacgtgcaggtttgttacataggtaaacgtgtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56874216 67 +  60714840 aaattaaaatt-----taagttccagaatccatgtgcaggatgtgcaggtttgttacacaggtaaacgtgtg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60664908 69 +  64156825 taattaaaattta---taagttacaggatccatgtgcaggaggtgcaggtttgttacacaggtaaacgtgtg
i rheMac3.chr19                 I 6 I 893
s papAnu2.chr19                  47913947 69 +  51301725 taattaaaatttattttaagttccaggatccatgtgcaggaggtgcaggtttgttacacaggtaaacgt---
i papAnu2.chr19                 I 6 C 0
s chlSab2.chr6                   47612220 69 +  50890351 aaattaaaatgtattttaagttccaggatccatgtgcgggaggtgcaggtttgttacacaggtaaacgt---
i chlSab2.chr6                  I 3 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e macFas5.chr19                  55805933 953 +  59248254 I

a score=445864.000000
s hg38.chr19_GL949751v2_alt        938651 544 +   1002683 ccatggtggtttgctgcacccatcaacccatcacctaggtattaagccccacacgcatcagctatttatcctgatcctctccctcccccaatt-ccccctacaggccccagtgtgtggtgttcccctccctgtgtccatgtgatctcattgttcagctgccacttacaagtgagaacatgcagtg-tttggttttcagttcctgtgttagtttgctgaggataatgttttccagctccatccatgtccctgcaaaggacatgatctcattcctttttatggctgcatagtattccatggtgtatatgtactgtatttgctttatcctttctatcattgatgggcatttgggttgattccttgtctttgctattgtgaatagtgctgcaatgaacatatgtgtgcatg-tatctttataatacaatgatttatattcctttgggtatataaccagtaatgggattgctgggtcaaatggtatttctggccaggcgcagtggctcacacatgtaatcccagcactttgggaggccgaggtgggcagatc
s panTro4.chr19                  59932150 545 +  63644993 ccatggtggtttgctgcacccatcaacccatcacctaggtattaaaccccacacgcatcagctatttatcctgatcctctccctcccccagtt-ccccctacaggccccagtgtgtggtgttcccctccctgtgtccatgtgatctcattgttcagctgccacttacaagtgagaacatgcagtggtttgcttttcagttcctgtgttagtttgctgaggataatgttttccagctccatccatgtccctgcaaaggacatgatctcattcctttttatggctgcatagtattccatggtgtatatgtaccgtattttctttatcctttctatcattgatgggcatttgggttgattccttgtctttgctattgtgaatagtgctgcaatgaacatatgtgtgcatg-tatctttataatacaatgatttatattcctttgggtatataaccagtaatgggattgctgggtcaaatggtatttctggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggcagatc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56874283 541 +  60714840 ccatggtggtttgctgcacccatcaacccatcacccaggtatcaagcgccacacacatcagctgtttatcctgatcctctccctcccccag---cccccgacaggccccggggtgt-gtgctcccctccctgtgtccacgtgttctcattgttcagctcccacttacaagtgagaacatgcagtg-tttgctttcctgttcttgcgttagtttgctgaggataatggcttccagctccatccatgtccctgcaaaggacgtgatctcattcctttttatggctgcatagtattccatggtgtacatgtaccgtattttctttatccagtctatcattgatgggcatttgggttgattccttgtttttgctattgtgaatagtgctgcaatgaacatatgtgtgcatg-tatctttataatacaatgatttatattcctttgggtatataaccagtaatgggattgctgggtcaaatgatatttctggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggcagatc
i ponAbe2.chr19                 C 0 C 0
s papAnu2.chr19                  47914016 540 +  51301725 -----gtggtttgctgcacccatcaa-ccatcacctaggtattaaaccccaCACGcgttagctatttttcctgatcctctccctcccctgactcccccctacaggccccagtgtgtgttgttcccctccctgtgtccatgtgttctcattgttcagctcccacttacaagtgagaaagtgtggta-tttgcttttctgttcttgcgttagtttgctgaggataatggcttccagctccatccatgtccctgcaaaggacatgacctcattcctttttatggctgcatagtattccatgctgtgtatgtaccatattttctttatgcagtctgtcattgatgggcatttgggttgattctatgtctttgctattgtgaatagtgctgcaatgaacatatgtgtgcatgttatctttataatacaatgatttatatgcttttggatatataaccagtaatgggattgctgggtcaaatggtatttctgaccgggtgcagtggctcacacctgtaatcccagcactctgggaggccgaggtgggcagatc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47612289 539 +  50890351 -----gtggtttgctgcacccatcaa-ccatcacctaggtattaaaccccacacgcgttagctctttttcctgatcctctccctcccctgact-ccccctacaggccccagtgtgtgttgttcccctccctatgtccacgtgttctcattgttcagctcccacttacaagtgagaaagtgtggtg-tttgcttttctgttcttgcgttagtttgctgaggataatggcttccagctccattcatgtccctgcaaaggacatgacctcattcctttttagggctgcatagtattccatgctgtgtatgtactatattttctttatgcagcctgtcattgatgggcatttgggtagattccatgtctttgctattgtgaatagtgctgcaatgaacatatgtgtgcgtgttatctttataatacaatgatttatatgcctttggatatataaccagtaatgggattgctgggtcaaatggtatttctgACGgggtgcagtggctctcacctgtaatcccagcactctgggaggccgaggtgggcagatc
i chlSab2.chr6                  C 0 I 5309
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=11142.000000
s hg38.chr19_GL949751v2_alt        939195 22 +   1002683 acctgaggtcaggagctcaaga
s panTro4.chr19                  59932695 22 +  63644993 acctgaggtcaggagctcaaga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56874824 22 +  60714840 acctgaggtcaggagcttgaga
i ponAbe2.chr19                 C 0 C 0
s papAnu2.chr19                  47914556 22 +  51301725 gcctgaggtcaggagttcaaga
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=91206.000000
s hg38.chr19_GL949751v2_alt        939217 371 +   1002683 ccaccctggccaacatggtgaaactcccgtctctagcaaaaatccaaaaattagccaggcgttgtggcatgcacctgcagtcccagctactcgggaggctgaggcaggagaatcacttgaaccctggaggcagaggctgcagtgagccgagatcatgcccctgcaatccagcctgggtgacagagtgagactctgttt---aaaaaaaaaaaaaaaaaaaaaaGGTGGCcctgg-tgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcagaagtttgagaccagcatgaccaacaaggtaaaaccccatctctactaaaagaaaaaaaaaaaaaaa---agccagg
s panTro4.chr19                  59932717 369 +  63644993 ccaccctggccaacatggtgaaactcccatctctatcaaaaatacaaaaattagccaggcgttgtggcatgcacctgcagtcccagctactcgggaggctgaggcaggagaatcgcttgaaccctggaggcagaggctgcagtgagccgagatcatgcccctgcaatccagcctgggtgacagagtgagactctgttt---ttaaaaaaaaaaaaaaaaaaaaGGTggcccggggtgcggtggctcacgcctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggtcagaagtttgagaccagcatgaccaacaaggtaaaaccccatctctactaaaagaaa---aaaaaaaaa---aaccaag
i panTro4.chr19                 C 0 I 78
s ponAbe2.chr19                  56874846 377 +  60714840 gcacgctggccaacatggtgaaactcccctctctatcaaaaatacaaaaattagccaggcgtggtggcatgcacctgcagtcccagctagtcgggaggctgaggcaggaaaatcgcttgaaccctggaggcagaggctgcagtgggtcgagatcataccactgcaatccagcctgggtgacacagtgagactctgtttggaaaaaaaaaaaaaaaaaaaaaaaaGCTggccggg-tgcggtggctcacgcctgtaatcccagcactttgagaggccaaggcgggtggatcacctgaggtcagaagtttgaaaccagcgtgaccaacaaggtgaaaccccatctctattaaaaaaaaaaaaaaaaaaaaattagccagg
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=6888.000000
s hg38.chr19_GL949751v2_alt        939588 77 +   1002683 catggtggcaggcgcctgtagtcccagttacttaggaggctgagacaggataattgcttgaacctgggaggtggagg
s ponAbe2.chr19                  56875223 77 +  60714840 catggtggtaggtgcctgtggtcccagctacttaggaggctgagacaggataattgcttgaacctgggaggtggagg
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578  0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I
e panTro4.chr19                  59933086 78 +  63644993 I

a score=47222.000000
s hg38.chr19_GL949751v2_alt        939665 201 +   1002683 ttgcagtgagccgagatcgcaccactgcactccagcatgggctattgagcaatactacatctcaaaaaaaaaaaaaa--------ggaaaaaggatttctggttctgggtctttgaggaatcaccacactgtcttccacaatgaactaatttacattcccaacagtgtaaaagcattcctatttctccacagcctcgccagcacctgtt
s panTro4.chr19                  59933164 209 +  63644993 tccccgtgacccaagattgccccccccccctccagcatggggtattgagcaagactatttttcaaaaaaaaaaaaaaaaaaaaaaggaaaaaggatttctggttttgggtctttgaggaatcaccacactgtcttccacaatgaactaatttacattcccaacagtgtaaaagcattcctatttctccacagcctcgccagcacctgtt
i panTro4.chr19                 I 78 C 0
s ponAbe2.chr19                  56875300 202 +  60714840 ttgcagtgagccaagatcgcaccactgcactccagcatgggctattgagcaagactccatctaaaaaaaaaaagaaa-------caaaaaaaggatttctggttctgggtctttgaggaatcaccacactgtcttccacaatgaactaatttacattcccaacagtgtaaaagcattcctatttctccacagcctcaccagcatctgtt
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=26089.000000
s hg38.chr19_GL949751v2_alt        939866 317 +   1002683 gtttcttgacttttgttggttttttttttttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcacaatcttggctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgaatagctgggactacaggcgcccgccaccacgcccggctaattttttgtatttttaatagagacggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatctgcctgcctcggcctcccaaagtgctgggattaccggcgtgagccaccgtgcccggc
s panTro4.chr19                  59933373 313 +  63644993 gttttttgacttttttt---tttttttttttttttttgagatggagtctcactctgtcgcccaggctggagtgcagtggcgcaatcttggctcaccgcaacctctgcctcctgggttcacgccattctcctgcctcagcatcccgagtagctggtactagaagtgcccgccaccacgtccggctaattttttgtatttttag-agagacggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattaccggcgtgagccaccacgcccggc
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e ponAbe2.chr19                  56875502   0 +  60714840 C
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=223394.000000
s hg38.chr19_GL949751v2_alt        940183 872 +   1002683 gtttcttgactttttaataatcgccattttga-ctggtgtgagatggtgtctaaatgtggttttgatttgcatttctctaatgattggtgatgttgagcttttttttgtatgtttactggctgcataaacgtcttcttttgagaagtgactgttcatgtcctttacccactttttaatggttttttttttcttgtaaatttgtttaacttccttgtagattctggatattagacttttgtga-attgatagattgcaaacattttctcccattctgtaggttgtctgttcactctgatgatactttcttttgctgagcagaagctctttagtttagttagatcccatttgtcagtttttgcttttgttacaattgcttttgacgtttttgtcatgaaatctttgcccatgcctgtgtcctgaatggtattacctagattttcttctagggtttttatagttttcgggttttgcatccaagtctttcatccatcttgagttaatttttgtacaaggtgtaaggaacgggtccagtttctattttctgcatatggctagccaattctcccagcaccatttattaacccacagccaatttcatactaaatgggcatttcccttgaaaaccagcacaagacaaggatgccctctttcaccactcctattcaacatagtattggaagttctggccaggataatcaggcaagagaaagaaataaaggatactcaaataggaagagaggaaatcaaactatctctgtttgcagatgacatgatcctatatctagaaaaccccatcatctcagcccaaaagtttcttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaat
s panTro4.chr19                  59933686 871 +  63644993 gtttcttgactttttaataatcgccattttgaactggtgtgagatggtgtctcaatgtggttttgatttgcgtttctctaatgattggtgatgttgagcttttttcggtatgtttactggccgcatgaacgtcttcttttgagaagtgactgttcatgtcgtttacccactattttatggttttttttttcttgtaaatttgtttaacttccttgtagattctggatattagacttttgtga-attgatagattgcaaaaattttctcccattctgtaggttgtctgttcactctgatgatagtttcttttgctgagcagaagctctttggtttagttagatcccatttgtcagtgtttgcttttgttacaattgcttttgacatttttgtcatgaactctttgcctgtgcctgtgtcctgaatggtattacctagattttcttctagagtttttatagttt-cgggttttgcatctaagtctttcatccatcttgagttaatttttgtacaaggtgtaaggaaagggtccagtttctattttctgcatatggctagccaattctcccagcaccatttattaacccacagccaatttcatactaaatgggcatttcccttgaaaaccagcacaagacaaggatgccctctttcaccactcctattcaacagagtattagaagttctggccaggataatcag-caagagaaagaaataaaggatactcaaataggaagagaggaaatcaaactatctctgtttgcagatgacatgatcctatatctagaaaaccccatcatctcagcccaaaagtttcttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56875502 863 +  60714840 gtttcttgactttttaataatcgccattttga-ctggtgtgagatggtgtctcaatgtggttttgatttgcatttctctaatgattggtgatgttcagctttttttcatatgtttactagccacgtaaacatcttcttttgagaagtgatcgttcatgtcctttgcccactttttaa-----ttttttttcttataaatttgtttaacttccttgtagattctgaatattagacttttgtgagattgatagattgcaaaaattttctcccattctgtaggttgtctgttcactctgatgatagtttcttttgctgagcagaagctctttagtttatttagatcccatttgtcagtttttgcttttgttacaattgcttttgacatttttgtcatgaaatctttgcctgtgcctatgtcctgaatggtattacctagattttcttctagagtttttatagttt-tgggttttgcatttaagtctttaatccatcttgagttaatttttgtataaggtgtaaggaaagggtccagtttctattttctgcacatggctagccaattctcccagcacc----attaacccacagctaatttcatactaaataggcatttcctttgaaaaccaacacaagacaaggatgccctctttcaccactcctattcaacatagtattggaagttctggccagaataatcaggcaagagaaagaaataaaggatattcaaataggaagagaggaaatcaaactatctgtctttgcagatgacatgatcctatatctagaaaaccctatcatctcagcccaaaagtttcttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaat
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     30087 2030 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=475729.000000
s hg38.chr19_GL949751v2_alt        941055 991 +   1002683 cacaagcattcctatacaccaacaatagacaggcagagagccaaatcatgaaggaactcccattcacaattgctacaaagagaataaaatacctaggaatacagctaacaaggaaagtgaaggacatcttcaaggagaactacaattcactgctcaagaaaatcagagcggacacaaacaaatggaaaaacattccatgctcatggataggatgaatcaatatcgtgaaaatggccatactgcccaaagtaatttatagattcattgctattcccattgaactatcattgacattcctcacacaattag--aaaaaacta---taaaattcatatggaaccaaaaaagggcccatatagccaagacaatactaagcaaaaagaacaaagctggaggcctcaggct--cagacttcagactatattacaaggtgatagtaaccaaaacagcatggtactggtacaaaaacagacacatagaccaatggaacagaatagagatctcagaaataagaccacacatctacaaccatctgatcttcaacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataCACCTTGTTTTGATTTTGATTTCAACACAGCGtgt--ggtatttgcatgccatgtgatacagtttgaatatgtgttcccaccaaatctcatactggattatga-tccccaatgttggaggtgggggcctggtgggaggtgtttggatcataggggtggatccctc-attgcttggtgctttccttgcaatagtaagtgaattctcacaagatctggctattgcaaagtgtggcatgtcccccagtcccaactctctctctctcttgctcctgctcccaccacatgagacagctaccccctctttgccttctgccatgactgtaagcttcctgaggcctccccaaaagcagaagccagccttctgcttcctatacggccttcagaaccatgaaccaattaaac------ctcttttctt
s panTro4.chr19                  59934557 988 +  63644993 cacaagcattcctatacaccaacaatagacaagcagagagccaaatcatgaaggaactcccattcacaattgctacaaagagaataaaatacctaggaatacagctaacaaggaaagtgaaggacatcttcaaggagaactacaattcactgctcaagaaaatcagagcggacacaaacaaatggaaaaacattccatgctcatggataggatgaatcaatatcgtgaaaatggccatactgcccaaagtaatttatagattcattgctattcccattgaactatcattgacattcctcacacaattag--aaaaaactactttaaaattcatatggaaccaaaaaagggcccatatagccaagacaatactaagcaaaaagaagaaagctggaggcctcaggct--cagacttcagactatactacaaggtgacagtaaccaaaacagcatggtactggtacaaaaacagacacatagaccaatggaacagaatagagatctcagaaataagaccacacatctacaaccatctgatcttcaacaaacctgacaaaaacaaacaatggggaaaggattccctatttaataCACCTTGTTTTGATTTTGATTTCAACACAGCGtgt--ggtatgtgcatgccatgtgatacagtttgaatatgtgttcccaccaaatctcatactggattatga-tccccaatgttggaggtgggggcctggtggggggtgtttggatcataggggtggatccctc-attgcttggtgctttccttgcaatagtaagtgaattctcacaagatctggctattgcaaagtgtggcatgtcccccagtcccaactctctctctctcttgctcct------accacgtgagacagctaccccctctttgccttctgccatgactgtaagcttcttgaggcctccccaaaagcagaagccagccttctgcttcctatacggccttcagaaccatgaaccaattaagc------ctcttttctt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56876365 991 +  60714840 cacaagcattcctatacaccaacaatagacaagcagagagccaaatcaagaaggaactcccattcacaattgctacaaacagaataaaatacctaggaatacagctaacaaggaaagtgaaggacatcttcaaggagaactacaattcactgctcaagaaaatcagagcagacacaaacaaatggaaaaacattccatgctcatggataggacgaatcaatatcatgaaaatggccatactgcccaaactaatttatagatttgttgctattcccattgaactatcactgacatttctcacagaattag--aaaaaactactttaaaattcatatggaaccaaaaaagggcccatatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcaggct--cagacttcaaactatactacaaggtgacagtaaccaaaacagcatggtactggtacaaaaacagacac--agaccaatggaacagaatagagatctcagaaataagaccacacacctacaaccatctaatcttcaacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataCACCTTGTTTTGATTTTGATTTCAATACAGTGTGT--GGTATGAGCATGCCATGtgatacagtttgaatatacgttcccaccaaatctcatactggattatga-tccccagtgttggaggtgggggccgggtgggaggtgtttggatcataggggtggatccctc-attgcttggtgctttctttgcaatggtaagtgaattctcacaagatctggctattgcaaagtgtggcacgtcccccagtcccaactctctctctctcttgctcctgctcccaccacgtgagacagctacccaccctttgccttctgccatgactgtaagcttcctgaggcctccccgaaaccagaagccagccttctg-ttcctatacagccttcagaaccgtgaaccaattaaac------ctcttttctt
i ponAbe2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     32117 977 +    138250 cacaagcatttctatacactaacagtagacaagcagagagccaaatcatgaaggaactcccattcacaattgctacaaaaagaataaaatacctaggaatacagctaataagtgaaacggaggacatcttcaagg------------------------aaatcagagaggatacaaacaaatggaaaaacattccac-ttcatggataggaagaatcaatattgtgaaaatggccatactgcccaaagtaatttatagattaattgttagtcccattgaactatgattgacattcttcacagaattagaaaaaaaactactttaaaattcatatggaaccaaaaaaggacccatatagccaagacaatcctaagcaaaaagaacaaagctggaagcatcaggctgccagacttcaaactatactacgaggtgacagtaaccaaaacagaatggtactgctac-aaaacagacacatagaccaatggaacagaatagaaatctcagaagtaagaccacacatttacaaccatctgatctttgacaaacctgacaaaaacaagcaatggggaaagtattccctacttaataaGCCTTGTTTTGACTTTGATTTAAACTCAGTGTGTTAGGTATGTGCATGCCATGTGat--agtttgaatatacatgcccgccaaaccccatattggattatgaccccccactgttggagat-ggggcctggtgggaggtatttgaatcatgggggtggatccctcaattgcttggtgctgtcctcacaatagtgagtgaattctcacaacatgtgactattgcaaagtgtggcacatcctccagtcccaa--ttttctctctcttgctccttctcccagcatgtgagacacctgctccctcttcaccttctgccatgattgtaagcttcctgaggcctccccaaaagcagatgccagccttctgcttcctatacagccttcagaaccatgaaccaattaaacacctctttcttttctt
i calJac3.chr22_GL285922_random I 2030 I 593
e canFam3.chr1                   20071086 8353 - 122678785 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=149709.000000
s hg38.chr19_GL949751v2_alt        942046 548 +   1002683 atcaatgatccagtctcagatatttatagcagcacaaaatcggcctaatatagcatgaaatattgctcagcaatcaaaaggaacacatcattgatacatacagcagcttggatgggcctcaggggcattgcactgagtgacaaaaggatatctcaaacggttgcatactggatgatcccatttacatcagattctagaaatggaagattatagagatggagaacaaattaatggataccaggagttagggatggcaagggaaggagaagggtgtaggtgtgaatataaaagggtagcccaagggaggcccttgtgagacggaagagttctgtacagtgactgcggtgatggtgacgcgaatctacaactgtgacaaattggcatagaactagacacCTACTttatgccaatgtcaaattcctggtttttatgttgtactctaattacgtaagatgtaaccattagaggaaactggaaaaagagcacatgggattcttctgttctatcattgtagacttcctgtgactctagaaccatttcaaaagaga
s panTro4.chr19                  59935545 548 +  63644993 atcaatgatccagtctcaggtatttatagcagcacaaaatcggcctaatatagcatgaaatattgctcagcaatcaaaaggaacacatcattgatacatacagcagcttggatgggcctcaggggcattgcactgagtgacaaaaggatatctcaaacggttgcatactggatgatcccatttacatcagattctagaaatggaagattatagagatggagaacaaattaatggataccaggagttagggatggcaagggaaggagaagggtgtgggtgtgaatataaaagggtagcccaagggaggcccttgtgagacggaagagttctgtacagtgaatgcggtgatggtgacacaaatctacaactgtgacaaattggcatagaactagacacCTACTttatgccaatgtcaaattcctggtttttatgttgtactctaattatgtaagatgtaactattaggggaaactgaaaaaagagcacatgggattcttctgttctatcattgtagacttcctgtgactctagaaccatttcaaaagaga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56877356 548 +  60714840 atcaataatccagtctcaggtatttatagcagcacaaaaccagcctaatacaGcatgaaatattgctcagcaatcaaaaggaacacatcattgatacatacagcagcttggatgtgcctcaggggcattgcactgagtgacaaaagggtatctcaaacggttgcatactggatgatcccatttacatcagattctagaaatggaagattatagagatggagaaccaattaatggataccaggagttagggatggcaagggaaggagaagggtgtgggtgtgaatataaaagggtagcccaagggaggcccttgtgagacggaagagttctgtacagtgaatgcagtgatggtgacacgaatctacaactgtgacaaattggcacagaactagacacCTACTttatgccaatgtcaaattcctggtttttatgttgtactgtaattatgtaagatgtaaccattaggggaaactggaaaaagagcagatgggattcttctgttctatcattgtagacttcctgtgactctagaaccatttcaaaagaga
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     33094 593 +    138250 I
e nomLeu3.chr10                 103362684 100 - 106955855 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=11514.000000
s hg38.chr19_GL949751v2_alt        942594 102 +   1002683 aagttcaaaaaTTCAGTCAGAAGCACACGCACACATATGCACGCATGCACACACACA---------CATATGCACGCATGCAC------------ACACATATGCA-----------------------------------CGCACACA------------CACATATGC
s panTro4.chr19                  59936093 170 +  63644993 aagttcaaaaaTTCAGTCAGAAgcacacgcgcacacatgcacgcatgcacacacacatgcatgccacacatgcacacatgcacgcacacacacgcacacatatgcatgccgcacacacgcacacatacgcacgcgcgcacacgcacacatgcacgcatgcacacatatgc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56877904  49 +  60714840 aagttcaaaaaTCCAGTCAGAAGcacacgc-----------------------------------------------------------------acacatatgcg-----------------------------------tgcacaca---------------------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103362784  50 - 106955855 AAGTTCAAAAATTCAGTCAGAAGCACACGC-----------------------------------------------------------------ACACATATGCA-----------------------------------CGCATGCA--------------------C
i nomLeu3.chr10                 I 100 C 0
e canFam3.chr1                   20071086 8353 - 122678785 I
e calJac3.chr22_GL285922_random     33094 593 +    138250 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=120289.000000
s hg38.chr19_GL949751v2_alt        942696 216 +   1002683 ACGCA---------------------CACACGCACA----TGCACGCACACACACATATGCACGCACACAGTATGTGACCATCTTCCATGTCCCTGCCCACTAGGCATAATAGCCCTCACTCTGCCCTCAACCCCGCAAATCT---CATCCTTATCAACCTCGGCTCTTTCCAGCATGTTTCTCCTGCCTTGG----TGCTTCACTCTGAGACACAGGGAATGTTAGACACGCCCAGCCTCCAGCCTA
s panTro4.chr19                  59936263 241 +  63644993 acgcatgcacacacacatgcatgccacacacgcacacatatgcacgcacacacgcacatgcacacacacaGTATGTGACCATCTTCCATGTCCCTGCCCACTAGGCATAATAGCCCCCACTCTGCCCTCAACCCCGCAAATCT---CATCCTTATCAACCTCGGCTCTTTCCAGCATGTTTCTCCTGCCTTGG----TGCTTCACTCTGAGACACAGGGAATGTTAGACACGCCCAGCCTCCAGCCTA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56877953 190 +  60714840 --------------------------cacacgcaca----tgcatg--------------------cacaGTGTGTGACCATCCTCCATGTCCCTGCCCACTGGGCATAACGGCCC-CATTCTGCCCTCAACCCCGCGAATCT---CATCCTTATCAACCTCGGCTCTTTCTAGCATGTTTCTCCTGCCTTGG----TGCTTCACTCTGAGACACAGGGAATGTTAGACATGCCCAGCCTCCAGCCTC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103362834 220 - 106955855 ACACA---------------------CACACGCACACATATGCACGCACACGCGTACATGCACGCACACAGTATGTGACCATCTTCCATGTCCTTGCCCACTGGGCATAGTAGCCCCCACTCTGCCCTCAACCCCGCAAATCT---CATCCTTATCAACCTCGGCTCTTTCCAGCATGTTTCTCCTGCCTTGG----TGCTTCACTCTGAGACACAGGGAATGTTAGACACACCCAGCCTCCAGCCTA
i nomLeu3.chr10                 C 0 I 302
s canFam3.chr1                   20079439 195 - 122678785 -------------------------ACATGCACACACATGTGGGTGCATGCATACACATACACACATATAGTGTGC--------------------CTCATTTAGCATGACAGCCCCCATACTGCCCTCAGCCACACATGTCTGCACATTCTTGTCCAACTTGGCTCTTTTCAACATGCTTCTGTTCCTTTGGATTTGGGTCTACCCTGAG--ACAGGGAGTGTTAGAGATGCC------ACAGATCA
i canFam3.chr1                  I 8353 C 0
e calJac3.chr22_GL285922_random     33094 593 +    138250 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=303527.000000
s hg38.chr19_GL949751v2_alt        942912 530 +   1002683 GCGTATGATATTCTTAAAGTGCAGGCCGTAGTCTGGTACACCGTATTCAGCTGAGATGTTTGTGAAAGTGGAGGGGATAACACGCCTCACACAAAACTTACCGcagtggttctcaaagcagcattctggagcca-tagcatcagcatcacctgggaacttactaggaatgaaaatgactgga-ttcaccccagacctactgaagcagaagccctgggggctcagaaatctattctttaagcctccaggtgattcttatgctcatggaagtttgagaaccgctgATCAATGCATTCAGTGACTCAGAAACAGAGTCCCGGACTCTACAggtttgttggttggttggttggttggttggttggttAGTTTGTT--------TGTTTTTGTCACCCATATTCAACCAGCTGGACTCCACAGTATAGCAAGCCACTCCGATTATTCTTCTGCATGTTATATGTGATAAACCATCCACCTAGAGTAGGATTG------------GGGGCAGCATCTTAACATCTAACTACTTAGGACACCCACCCTGTTTACAGGCA
s panTro4.chr19                  59936504 538 +  63644993 GCATATGATATTCTTAAAGTGCAGGCCGTAGTCTGGTACACCGTATTCAGCTGAGATGTTTGTGAAAGTGGAGGGGATAACACGCCTCACACAAAACTTACCGcagtggttctcaaagcagcatcctggagcca-tagcatcagcatcacctgggaacttactaggaatgaaaatgactgga-ttcaccccagacctactgaagcagaagccctgggggctcagaaatctgttctttaagcctccgggtgattcttatgctcatggaagtttgagaaccgctgATCAATGCAATCAGTGACTCAGAAACAGAGTCCCGGACTCTACAggtttgttggttagttggttggttggttggttggttagttagttagttagtttgttTTTGTCGCCCATATTCAACCAGCTGGACTCCACAGTATAGCAAGCCACTCCGATTATTCTTCTGCATGTTATATGTGATAAACCATCCACCTAGAGTAGGATTG------------GGGGCGGCATCTTAACATCTAACTACTTAGGACACCCACCCTGTTTACAGGCA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56878143 513 +  60714840 GTGTATAATATTCTTAAAGTGCAGGCCGTAGTCCGGTACACCATATTCAGCTGACATGCTTTTGAAAGTGGAGGGGGTAGCACGCCTCACACAAAACTTACCAcagtggttctcaaagtggcatcctggag-ca-tagcatcagcatcacctgggaacttactaggaatgaaaatgactgga-tccaccccagacctactgaagcagaagccctgggggctcagaaatctgttctttaagcctccaggtgattcttatgctcatggaagtttgagaaccgctgATCAATGGAATCAGTGACTCAGAAACAGAGTCCCGGACTCTACA----------------ggttggttggttggttagttagtttgtt--------tgttTTTGTCACCCATATTCAACCAGCTGGACTCCACAGTATAGCAAGCCACTCCGATTATTCTTCTGCGTGTTATATGTGATAAACCATCCACCCAGAGTAGGATTG------------GGGGCAGCATCTTAACATCTAACTACTTAGGACACTCACCCTGTTTACAGGCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103363356 516 - 106955855 GCGTATGATATTCTTAAAGTGCAGGCCATAGTCCAGTACACCGTATTCAGCTGAGATGCTTTTGAAAGTGGAGGGGACAGCACACCT-ACACAAAACTTACTGcagtggttctcaaagcggcatcctgg-gcca-tagcatcagcatcacctgggaacttactaggactgaaaatgactgga-ttcaccccagacctactgaagcagaagccctgggggctcagaaatctgttctttaagcctccaggtgattcttatgcccatggaaatttgagaactgctgATCAATGGAATCAGTGACTCAGAAACAGAGTCCCAGACTCTACAggtt------------ggttggttggttggttggttggttggtt--------ggttTTTGTCACCCACATTCAACCAGCTGGACTCCACAGTATAGCAAGCCACTCTGATTATTCTTCTGCGTGTTATATGTGATAAACCATCCACCTAGAGTAGGATTG------------GGGGTACCATCTTAACATCTAACTACTTAGGACACCCACCCTGTTTACAGGCA
i nomLeu3.chr10                 I 302 C 0
s canFam3.chr1                   20079634 433 - 122678785 ATGCCCAAT-TTCTTAAGGCACAGGCTGGTATC-AACACA-TGAAATCAACTGAGGTGCCTTGAAGATGGGAGAAAATG--ATGGCTCACACAAAATTTTGTGcagtccttctcaaagtgacatccccagatcagcagcatcagtgtcacctggaaacttgttaaaaataaacatcactggaccccaccgcataccttctgaatcaggaattattgggatccagag--------tctcagcCACC------------CCCCCCCAATGTTTTTAGAGCCACTGGCCAATGGAATCAGAGACTCAAAAATAGAGTCCAGGAATCTACAATCT------------------------------------------------TAT------------------------------------------AAGTGACTCAGATTATTCTTTTCCACATTAGGCATTATAAACCATGCCCCTAAGGCTGGATAGAAATGGGGATGTAGGGCAGCATAGTAATGTCTAA-TATTT---ATACCCACCTTATTTACAGGCA
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     33094 593 +    138250 I
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=316862.000000
s hg38.chr19_GL949751v2_alt        943442 337 +   1002683 GAAATAAAGGATTTTTAAAACAAAGCAAATCTGTGAAAGAACCAACTGAATTAAATCGAGAAGTCTAGGCAGAGAGGAGAGAG---AGAAGGGGTCCGTGTACCTCATACGCTGTGCACCAGAATGGACCCTGCAGAACCTACCTGCTACCGGGGAAGGTGGTTCTGTTGGTAACCG---GCTGGGGGTCACAGAGGTTCCTGGgaaatcagaaaatgagataaatctgtgctctgt-cgctgtgggtcctgaacaaataacgaaacat-ctccgtgactgagtttcctcaccggaaaaatgagcctaaagtagcttacatcactggactgttgtggatgttaaT
s panTro4.chr19                  59937042 337 +  63644993 GAAGTAAAGGATTTTTAAAACAAAGCAAATCTGTGAAAGAACCAACTGAATTAAATCGAGAAGTCTAGGCAGAGAGGAGAGAG---AGAAGGGGTCCGTGTACCTCCTACGCTGTGCACCAGAATGGACCCTGCAGAACCTACCTGCTACCGAGGAAGGTGGTTCTGTTGGTAACCG---ACTGGGGGTCACAGAGGATCCTGGgaaatcagaaaatgagataaatctgtgctctgt-cgctgtgggtcctgaacaaataaagaaacat-ctccgtgactgagtttcctgacctgaaaaatgagcctaaagtagcttacatcactggactgttgtggatgttaaT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56878656 340 +  60714840 GGAGTAAAGGATTTTTAAAACAAAGCAAATCTGTGAAAGAACCAAGTGAATTAAATCGAGAAGTCTAGGCAGAGAGGAGAAAGAGAAGAAGGGGTCCGTGTACCTCATACGCTGTGCACCAGAATGGACCCTGCAGAACTTACCTGCTACCGAGGAAGGTGGTTCTGTTGGTAACTG---GCTGGGGGTCACAGAGGTTCCTGGgaaatcagaaaatgagataaatctgtgctctat-cgctgtgggtcctgaacaaataatgaaacat-ctccgtgactgagtttcctcacctgaaaaatgagcctaaaatagcttacatcactggactgttgtggatgttaaT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103363872 313 - 106955855 G---------------------------ATTTGGGAAAGAACCAAGTGAATTAAATCGAGAAGTCTAGGCAGAGAGGAGAAAGAAAAGAAGGGGTCCATGTACCTCATATGCTGTGCACCAGAATGGACCCTGCAGAACTAACCTGCTACCGAGGAAGGTGGTTCTGTTGGTAACAG---GCTGGGGGTCACGGAGGTTCCTGGgaaatcagaaaatgagataaatccgtgctctgt-cgctgtgggtcctgaacaaataatgaaacat-ctccgtgactgagtttcctcacccgaaaaatgagcctaaagtatcttacatcactggactgttgtggatgttaat
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     33687 329 +    138250 GAAGTGAAGGGTTTTTAAAACAAAGCAAGTTTCTTAAAGAAACAAGTGAGTTAAATTGACAAACCTAGGCAGAAAGGCAAG-----AGAAGGAGTCCATGTGCCTCACACCCCGCGCACCAGAATGGATCTTGCAGAACTTACCTTTGGCAGACGAAGGTGGTTCCGTTGGTAACTGGCTGCTGGGGGTCACAGAGATTCCTGGGAAATCAGAAAATGAGAAAAA----TGCTCTGG-TCATGGGAGTCATCAACAAATACTAAaacat-ctctgtaccctagtttcctcacccgaaaaatgagtctaaagtagcttacatcaatggattgctgtgGATG-----
i calJac3.chr22_GL285922_random I 593 C 0
s canFam3.chr1                   20080067 339 - 122678785 GAAATCAGTGattttttaaataaattaaatttGTGAAAGAGACAAGTGAATTAAATTGAGAAATCTGGATAAAAGGGGAAAAGAA-AAAAAGGGTCTATGGGTCT-ATATCCCAGACACCAGGATGAACCCTCCAGAATTTACCTGTCACAGAGGAAGGTGGTTCTCTGGATAACAA---ACCGGGGGTCACAGAAGTCCCTGGGAAATCAGAAAAAAAGAGAATTCTGTGCTCTCTGGGCTATGGGTCCTGGGCAAATAATAAAGCACATTCTGCGACCCACTTACCGCACCTAAAAGATGAATCCAAAGAAGCTCACATCG-TAGACTGTCATGGGTGTTAAT
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578   0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=5765.000000
s hg38.chr19_GL949751v2_alt        943779 11 +   1002683 AAGCATTTGAg-
s panTro4.chr19                  59937379 11 +  63644993 AAGCATTTGAg-
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56878996 11 +  60714840 AAGCATTTGag-
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364185 11 - 106955855 aagtATTTGAg-
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     34016  7 +    138250 -----TTTGAgg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080406  0 - 122678785 C
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578  0 +  51301725 C
e macFas5.chr19                  55805933 953 +  59248254 I
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=1898.000000
s hg38.chr19_GL949751v2_alt        943790 2 +   1002683 ct
s panTro4.chr19                  59937390 2 +  63644993 ct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879007 2 +  60714840 ct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364196 2 - 106955855 ct
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55806886 2 +  59248254 cc
i macFas5.chr19                 I 953 C 0
s calJac3.chr22_GL285922_random     34023 2 +    138250 cc
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080406 0 - 122678785 C
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578 0 +  51301725 C
e rheMac3.chr19                  60664977 893 +  64156825 I

a score=21990.000000
s hg38.chr19_GL949751v2_alt        943792 17 +   1002683 gggtgcagtgcctcatg
s panTro4.chr19                  59937392 17 +  63644993 gggtgcagtgcctcatg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879009 17 +  60714840 gggcgcagtgcctcatg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364198 17 - 106955855 gggcacagtgcctcacg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60665870 17 +  64156825 gggtgcagtggctcaca
i rheMac3.chr19                 I 893 C 0
s macFas5.chr19                  55806888 17 +  59248254 gggtgcagtggctcaca
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     34025 16 +    138250 aggcgcgg-ggctcaca
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080406  0 - 122678785 C
e chlSab2.chr6                   47612828 5309 +  50890351 I
e papAnu2.chr19                  47914578  0 +  51301725 C

a score=115924.000000
s hg38.chr19_GL949751v2_alt        943809 56 +   1002683 cctgtaatcccagcactttgggaggctgaggagggcagatcacttgaggtcaggag
s panTro4.chr19                  59937409 56 +  63644993 cctgtaatcccagcactttgggaggctgaggagggcagatcacttgaggtcaggag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879026 56 +  60714840 cctgtaatcccagcactttgggaggccgaggagggcagatcacttgaggtcaggag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364215 54 - 106955855 cctgtaatcccagcactttgggaggctgaggcgggcagatca--tgaggtcaggag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60665887 56 +  64156825 cctgtaatcccagcactctgggaggccgaggtgggcagatcgcctgaggtcaggag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55806905 56 +  59248254 cctgtaatcccagcactctgggaggccgaggtgggcagatcgcctgaggtcaggag
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47618137 51 +  50890351 cctgtaatcccagcacttt-----gccgaggcgggcagatcacctgaggccaagag
i chlSab2.chr6                  I 5309 C 0
s calJac3.chr22_GL285922_random     34041 54 +    138250 cctgtaatcccagcgttttgggaggcagagccaggcaaatc--ccgaggtcaggag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080406  0 - 122678785 C
e papAnu2.chr19                  47914578  0 +  51301725 C

a score=9267.000000
s hg38.chr19_GL949751v2_alt        943865 7 +   1002683 ttcaagc
s panTro4.chr19                  59937465 7 +  63644993 ttcaagc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879082 7 +  60714840 ttcaagc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60665943 7 +  64156825 ttcaagc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55806961 7 +  59248254 ttcaaga
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47618188 7 +  50890351 ttcaaga
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     34095 7 +    138250 ttggaga
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080406 0 - 122678785 C
e nomLeu3.chr10                 103364269 0 - 106955855 C
e papAnu2.chr19                  47914578 0 +  51301725 C

a score=996423.000000
s hg38.chr19_GL949751v2_alt        943872 500 +   1002683 ccagcctggccagtatggtgaaaccccgtctccactaaaaatacaaaaattagccaggcgtggtggtgtgcacctgtaatcccagctgctcgggaggctgaggcaggagaatcacttgaacctaggaggcagaggttgcagtgatctgagatcgcaccactgcactccagcctgggtgacgcagtaagactccatctg-----------------------------------------------------------------aaaaaaaaaGGCTTA---------------------gccaggcgtggtggctcacacctgtaatcccagcactttgagaggccgaggcaggcagatcacctgaggtcaagagttcaagaccagcctggccaacatggtgaaaccctgtctctacgaaaaatacaaaaattagctgggcatgatggcaggtgcctgtaatcccatctactca--------------------------------------ggaggctgaggcaggagaatcgcttaaacccaggaggtggaggttgcagtgaactgagatcactccactgcactccagcctgggtgacaaagtgagac----tccccccaaaaaaa
s panTro4.chr19                  59937472 501 +  63644993 ccagcctggccagtatggtgaaaccccgtctccactaaaaatacaaaaattagccaggtgtggtggtgcgcacctgtaatcccagctgctcgggaggctgaggcaggagaatcacttgaacctaggaggcagaggttgcagtgatctgagatcacaccactgcactccagcctgggtgacgcagtaagactccatctga----------------------------------------------------------------aaaaaaaaaGGCTTA---------------------gccaggcgtggtggctcacacctgtaatcccagcactttgagaggccgaggcaggcagatcacctgaggtcaagagttcaagaccagtctggccaacatggtgaaaccctgtctctacgaaaaatacaaaaattagctgggcatgatggcaggtgcctgtaatcccatctactcg--------------------------------------ggaggctgaggcaggagaatcgcttaaacccaggaggtggaggttgcagtgaactgagatcactccactgcactccagcctgggtgacaaagtgagac----tctcaaaaaaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879089 498 +  60714840 ccagcctggccagtatggtgaaaccctgtctccact-aaaatataaaaattagccaggcgtggtggtgtgcacctgtaatcccagctgctcaggaggctgaggcaggagaatcgcttgaacctaggaggcagaggttgcagtgatctgagatcgcaccactgcactccagcctgggcgacgcagtaagactccatctc-----------------------------------------------------------------aaaaaaaaaGGCTTa---------------------gccgggcatggtggctcacacctgtaatcccagcactttgagaggccaaggcaggcagatcacctgaggtcaagagttcaagaccagcctggccaacatggtgaaaccctgtgtctac-aaaaatacaaaaattagctgggcatgatggcgggtgcctgtaatcccatctactcg--------------------------------------ggaggctgaggcaggagaatcgcttaaacccaggaggtggaggttgcagtgagctgagatcactccactgcactccagcctgggcgacaaagtgagac----tctcaacaaaaaaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60665950 509 +  64156825 ccagcctggccaaggtggtgaaa-cccgtctctatcaaaaatacaaaaattagccaggcattgtggcatgcacctgtagccccacctacttgggaggctgaggcaggagaaacgcttgaacctgggaggcagaggttgctgtgagccaagatcccaccactgcactccagcctgggcgatgcggtaaga--ctatctcaaaaaaaagtaaaag-----------------------------------------------aaaaaaaaagaaGGCTCA---------------------gccaggcgtggtggctcacacctgtaatcccagcccttt-----gcggaggcaggcggatcacctgaggccaagagttcaagaccagcctggccaacatggtgaaaccccatatctac-aaaaatacaaaaattagctgggcatgatggcaggtgcctgtaatcccagctactca--------------------------------------ggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgctgtgagccaagatcacaccactgcactccagtctgggtgacagagcgagac----tctcaaaaaaaaaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55806968 511 +  59248254 ccagcctggccaaggtggtgaaa-cccgtctctatcaaaaatacaaaaattagccaggcattgtggcacgcacctgtagtcccacctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgccgtgagccaagatcacaccactgcactccagcctgggcgatgcagtaagactctatctcaaaaaaaaataaaag-----------------------------------------------aaaaaaaaagaaGGCTTA---------------------gccaggcgtggtggctcacacctgtaatcccagcacttt-----gccgaggcaggcggatcacctgaggccaagagttcaagaccagcctggccaacatggtgaaaccccatatctac-aaaaatacaaacattagctgggcatgatggcaggtgcctgtaatcccagctactca--------------------------------------ggaggctgaggcagcagaatcgcttaaacccgggaggtgcaggttgcagtgagccgagatcacaccactgcactccagtctgggtgacagagcgagac----tctcaaaaaaaaaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47914578 497 +  51301725 ccagcctggccaaggtggtgaaa-cccgtctctatcgaaaatacaaaaattagccaggcattgtggcatgcacctgtagtcccacctacttgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatctcaccactgcactccagcctgggcgatgcagtaagactccatctca-------------------------------------------------------------aaaaaaaaagaaggctta---------------------gccaggcgtggtggctcacacctgtaatcccagcacttt-----gccgaggcgggcagatcacctgaggccaagagttcaagaccagcctgaccaacatggtgaaaccccatatctac-aaaaatacaaaaattagctgggcatgatggcaggtgcctgtaatcccagctactcg--------------------------------------ggaggctgaggcagcagaatcgcttaaacccgggaggtgcaggttgcagtgagctgagatcacaccactacactccagtctgggtgacagagcaagac----tctcaaaaaaaaaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47618195 551 +  50890351 ccagcctgtccaacatggtgaaaccccatatcta-caaaaatacaaaaattagctgagcatgatggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcacaccactgcactccagcctgggcgatgcaataagactccatctcaaaaaaaaaaaaaag---------------------------------------------aagaaaaaaaaaaaGGCTTA---------------------gccaggcgtggtggctcacacctgtaatcccagcacttt-----gccgaggcgggcagatcacctgaggccaagagttcaagaccagcctgtccaacatggtgaaaccccatatctac-aaaaatacaaaaattagctgagcatgatggcaggtgcctgtaatcccagctactcgggaggctgaggcgggggaatcgcttaaacccgggaggtggaggctgaggcagcagaatcgcttaaacccaggaggtgcaggttgcagtgagccgagatcacaccactacactccagtctgggtgacagagcaagac----tctcaaaaaaaaga
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     34102 574 +    138250 ccatcctggccaatatggtaaaatcccatctctactaaaaatacaaaaattagccaggcatggtggcaggcatctgtagtctcagctactctggaggctgaggcaggagaaacgcttgaacctgggagacggaggctgcagtgagcagagatcatgctattgcattccagccttggccacagagcaagactccgtctcaaaaaaaaaaaaaaaTCAAAGccatcgttaataataatgcattgtatatttcaaaattcctaaaacagtaaacattcttactacaaagaaattataagatggtgaggtgtagtgactcatgcctgtaatcccaacacttt------cagaggcaggaggctcacttgagcccaggagttcaagaccagcctgggcaacatgg-gaaactccatctctacaaaaaatacaaaaa-tagccgggcatgatggtgcccacctgtagtcccagctactag--------------------------------------ggaggctgtggtgggaggatcac-agaacctgggaggcagaggctgcactgaaccaagatcaaaccactgcgctccatcctgggtgac----cgagaccctgtcccaaaaaaa---
i calJac3.chr22_GL285922_random C 0 I 448
e canFam3.chr1                   20080406   0 - 122678785 C
e nomLeu3.chr10                 103364269   0 - 106955855 C

a score=14435.000000
s hg38.chr19_GL949751v2_alt        944372 31 +   1002683 aaaaaaaaaaaaaa---aGCAGCAGCATTTGTAA
s panTro4.chr19                  59937973 34 +  63644993 aaaaaaaaaaaaaaaGCAGCAGCAGCATTTGTAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879587 22 +  60714840 gagga------------agaaGCAGCATTTGCAA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60666459 18 +  64156825 aaaaaaa----------------aGCATTTGTAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55807479 21 +  59248254 aaaaaaa-------------GGCAGCATTTGTAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47915075 18 +  51301725 caaaggc----------------agcATTTGTAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47618746 26 +  50890351 aaaaaaaaa--------aaaGGCAGCATTTGTAA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20080406  0 - 122678785 C
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269  0 - 106955855 C

a score=262604.000000
s hg38.chr19_GL949751v2_alt        944403 137 +   1002683 AGCACACCTGGCACATTCTGGGCTA-TTAACAAGGAAATGC-ATGCAGCTCCCGT-CCACCTTTTTCAACCTCAGTTCTAT---TTCTTCTGGATTCCTGTGTCCTACCCCTCACTGTGACCCTGGGGGCAAAACAGA-TTTTT
s panTro4.chr19                  59938007 137 +  63644993 AGCACACCTGGCACATTCTGGGCTA-TTAACAAGGAAATGC-ATGCAGCTCCCGT-CCGCCTTTTTCAACCTCAGTTCTAT---TTCTTCTGGATTCCTGTGTCCTACCCCTCACTGTGACCCTGGGGGCAAAACAGA-TTTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879609 138 +  60714840 AGTACACCTGGCACATTCTGGGATA-TTAACAAGGAAATGC-ATGCAGTTCCCATCCCTCCTTTTTCGACCTCAGTTCTGT---TTCTTCTGGATTTCTGTGTCCTACCCCTCACTGTGACCCTGGGGGCAAAACAGA-TTTTT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60666477 143 +  64156825 AGCATACCTGGCACATTCTGGGATACTTAACAAGGAAATGC-ATGCAACTCCTGTCCGTCCTTTTTGAACCTCAGTTCTATTTCTTCTTCTGGATTCTTGTGTCCTACCCCTCACTGTGACCCTGGGGGCAAAACAGACTTTTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55807500 143 +  59248254 AGCACACCTGGCACATTCTGGGATACTTAACAAGGAAATGC-ATGCAACTCCTGTCCGTCCTTTTTGAACCTCAGTTCTATTTCTTCTTCTGGATTCTTGTGTCCTACCCCTCACTGTGACCCTGGGGGCAAAACAGACTTTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47915093 143 +  51301725 AGCACACCTGGCACATTCTGGGATATTTAACAAGGAAATGC-ATGTAACTCCTGTCCCTCCTTTTTGAACCTcagttctgtttcttcttctggaTTCCTGGGTCCTACCCCTCACTGTGACCCTGGGGGCAAAACAGACTTTTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47618772 140 +  50890351 AGCACACCTGGCACATTCTGGGATACTTAACAAGGAAATGC-ATGTAACTCCTGTCCCTCCTTTTTGAACCTGAGTTCTAT---TTCTTCTGGATTCCTGTGTCCTACTCCTCACTGTGACCCTGGGGGCAAAACAGACTTTTT
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20080406 140 - 122678785 AGCACACCTAGCACATTCTGGACTAGTTTATATCGACAGGCTTTATAGCTGCC-TCCCTGCTTTTCGAACCTCAGCTCTGC--CCTTTTCTAGATCTCTGTGACCTGCACCTTACATTGCCCCTAGTAGCAAAACTGGCTCTT-
i canFam3.chr1                  C 0 I 5509
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269   0 - 106955855 C

a score=58626.000000
s hg38.chr19_GL949751v2_alt        944540 34 +   1002683 CTACC-AAAAACTAAATGATGTATTTTGTTTGATT
s panTro4.chr19                  59938144 34 +  63644993 CTACC-AAAAACTAAATTATGTATTTTGTTTGATT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879747 34 +  60714840 CTACC-AGACACTAAATGATGTATTTTGTTTGATT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60666620 35 +  64156825 CTACCAAAAAACTAAATGATGTATTTTGTTTGATT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55807643 35 +  59248254 CTACCAAAAAACTAAATGATGTATTTTGTTTGATT
i macFas5.chr19                 C 0 I 512
s papAnu2.chr19                  47915236 35 +  51301725 CTACCAAAAAACTAAATGATGTATTTTGTTTGATT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47618912 35 +  50890351 CTACCAAAAAACTAAATGATGTATTTTGTTTGATT
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269  0 - 106955855 C

a score=17577.000000
s hg38.chr19_GL949751v2_alt        944574 9 +   1002683 TAATATGAc
s panTro4.chr19                  59938178 9 +  63644993 TAATATGAc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879781 9 +  60714840 TAATATGAC
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60666655 9 +  64156825 TAATATGAC
i rheMac3.chr19                 C 0 I 336
s macFas5.chr19                  55808190 9 +  59248254 TAATATGAc
i macFas5.chr19                 I 512 C 0
s papAnu2.chr19                  47915271 9 +  51301725 TAATATGAC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47618947 9 +  50890351 TAATATGAc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269 0 - 106955855 C

a score=-3977.000000
s hg38.chr19_GL949751v2_alt        944583 1 +   1002683 -a
s panTro4.chr19                  59938187 1 +  63644993 -a
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879790 1 +  60714840 -C
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55808199 1 +  59248254 g-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47915280 1 +  51301725 G-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47618956 1 +  50890351 g-
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269 0 - 106955855 C
e rheMac3.chr19                  60666664 336 +  64156825 I

a score=388638.000000
s hg38.chr19_GL949751v2_alt        944584 233 +   1002683 ttgttaaatgtactgatcagtggcgttgggtatgttcacattgtggtacaatatgttgacctctagaacttatttttcttgcaaaactgaaattctgtgcccattaaacactaattccttctctctcctctttctggcccttaacaaccaccattgtactttgtgtttctacagtgttgacattagatacctcctttgactagaatcat-acagtagttgtccttttg----tgactg
s panTro4.chr19                  59938188 237 +  63644993 ttgttaaatgtactgatcagtggcgttgggtatgttcacactgtggtacaatatgttgacctctagaacttatttttcttgcaaaactgaaattctgtgcccattaaacactaattccttctctctcctctttctggcccttaacaaccaccattgtactttgtgtttctacagtgttgacattagataccttctttgagtagaatcat-acagtagttgtccttttgtgactgactg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56879791 233 +  60714840 TGGttaagtgtgctcatccgtggcgttgggtatgttcacactgtggtacaacgtgttgacctctaaaacgtatttttcttgcaaaactgaaactctgtgcctattaaacactaattccttctctcccctctttctggcccttaacaaccaccattgtactttgtgtttctacagtgttgacattagataccgcctttgagtagaatcat-acactagttgtccttttg----tgactg
i ponAbe2.chr19                 C 0 I 4084
s rheMac3.chr19                  60667000 234 +  64156825 ttgttaagtgtactgaccagtggcattgggtatgttcacattgtggtacaatatgttgacctctagaagttatttttcttgcaaaactgaaactctatgcccattaaacactaattcctgctctcccctctttctggcccttaacaaccaccgttgtactttgtgtttctataattttgacattagatacctcctttgagtagaatcataatagtagttgtcctttta----tgactg
i rheMac3.chr19                 I 336 I 9
s macFas5.chr19                  55808200 234 +  59248254 ttgttaagtgtactgaccagtggcattgggtatgttcacattgtggtacaatatgttgacctctagaagctatttttcctgcaaaagtgaaactctatgcccattaaacactaattcctgctctcccctctttctgtcccttaacaaccaccgttgtactttgtgtttctataattttgacattagatacctcctttgagtagaatcataatagtagttgtcctttta----tgactg
i macFas5.chr19                 C 0 I 9
s papAnu2.chr19                  47915281 233 +  51301725 TTGTTAAGTGTACTGACCAGTGGCATTGGGTATGTTCACATTGTGGTACAATATGTTGACCTCTAGAAGCTATttttcttgcaaaactgaaactctatgcccATTAAACACTCATTCCTGCTCTCCCCTCTTTCTGGCCCTTAACAACCACCGTTGTACTTTGTGTTTCTACAATTTTGACATTAGATACCTCCTTTGAGTAGAATCAT-ATAGTAGTTGTCCTTTTA----tgactg
i papAnu2.chr19                 C 0 I 9
s chlSab2.chr6                   47618957 214 +  50890351 ttgttaagtgcactgaccagtggcattgggtatgttcacattgtggtacaatat-----------gaagttattttttttgcaaaactgaaactctatgcccattaaacactaattcctgctctcccctctttctggcccttaacaaca--------attttgtgtttctacaattttgacattagatacctcctttgagtagaatcat-acagtagttgtccttttg----tgactg
i chlSab2.chr6                  C 0 I 9
e canFam3.chr1                   20080546 5509 - 122678785 I
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269   0 - 106955855 C

a score=273542.000000
s hg38.chr19_GL949751v2_alt        944817 155 +   1002683 acttagcataatgtcctcaaggtatatccatgttgtagtatgtgtcagaatttccttcttttttaaggctgcataatattccattgcatgta---------------------------------tataaccacat------------------------------------tatgAGGTATGCTGCTCTTTTTTGAAAGAAACCCCCTTTAAGAATGGTAGTC
s panTro4.chr19                  59938425 155 +  63644993 acttagcataatgtcctcaaggtatatccatgttgtagtctgtgtcagaatttccttcttttttaaggctgcataatattccattgcatgta---------------------------------tataaccacat------------------------------------tatgAGGTATGCTGCTCTCTTTTGAAAGAAACCCCCTTTAAGAATGGTAGCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884108 152 +  60714840 acttagcataatgtcctcaagataaatccatgttgtagtatgtgtcagaatttc---cttttttaaggctgcataatattccattgcatgta---------------------------------tataaccacat------------------------------------tatgAGGTATGCTGCTCTCTTTTGAGAGAAACCCCCTTTAAGAATGGTAGCC
i ponAbe2.chr19                 I 4084 C 0
s rheMac3.chr19                  60667243 224 +  64156825 acttagcataatgttctcaaggtatatccatgttgtagtatatgtcagaatttccttcttttttaaggctgcgtaatattccattgcatgtatataaccacattGTTATACACATGTGGTATGTGTATAACCACATTGTTATATACATGTGGTATGTGTATAACCACATATATATGAGGTATGCTGCTCTCTTTTGAAAGAAACCCCCTTTAAGAATGGTAGCC
i rheMac3.chr19                 I 9 C 0
s macFas5.chr19                  55808443 224 +  59248254 acttagcataatgttctcaaggtatatccatgttgtagtatatgtcagaatttccttcttttttaaggctgcgtaatattccattgcatgtatataaccacattgttatatacatGTGGTATGTGTATAACCACATTGTTATATACATGTGGTATGTGTATAACCACATATATATGAGGTATGCTGCTCTCTTTTGAAAGAAACTCCCTTTAAGAATGGTAGCC
i macFas5.chr19                 I 9 C 0
s papAnu2.chr19                  47915523 191 +  51301725 acttagcataatgttctcaaggtatatccatgttgtagtatgtgtcagaatttccttcttttttaaggctgcgtaatattccattgcatgta---------------------------------tataaCCACATTGTTATATACATGTGGTATGTGTATAACCACATATATATGAGGTATGCTGCTCTCTTTTGAAAGAAACCCCCTTTAAGAATGGTAGCC
i papAnu2.chr19                 I 9 C 0
s chlSab2.chr6                   47619180 205 +  50890351 acttagcataatgtcctcaaggtaaatccatgttgtagtaggtgtcagaatttccttcttttttaaggttgcgtaatattccattgcatgtatataaccacattgttatatacatGTGGTATGTATATAACCAC-------------------ATGTATATAACCACATATATATGAGGTATGCTGCTCTCTTTTGAAAGAAACTCCCTTTAAGAATGGTAGCC
i chlSab2.chr6                  I 9 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e calJac3.chr22_GL285922_random     34676 448 +    138250 I
e nomLeu3.chr10                 103364269   0 - 106955855 C

a score=168449.000000
s hg38.chr19_GL949751v2_alt        944972 73 +   1002683 AAGTCCgacgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatca--tgaggtc---ag
s panTro4.chr19                  59938580 76 +  63644993 AAggccgacgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatca--tgaggtcaggag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884260 76 +  60714840 AAggccggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatca--tgaggtcaggag
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60667467 76 +  64156825 AAGGCTggcacggtggttcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--tgaggtcaggag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55808667 76 +  59248254 AAGGCTggcacggtggttcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--tgaggtcaggag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47915714 76 +  51301725 AAGgctggcacggtggttcacgcctgtaatcccagcactttgggaggctgagacaggcagatca--tgaggtcaggag
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47619385 76 +  50890351 AAGTCTggcatggtggttcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--tgaggtcagaag
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     35124 75 +    138250 Aggccaggtgcggtggctcacgcctgcactcccagcactttgggaggttgaggcaggcagatcacctgaggtcag---
i calJac3.chr22_GL285922_random I 448 I 3
e canFam3.chr1                   20080546 5509 - 122678785 I
e nomLeu3.chr10                 103364269  0 - 106955855 C

a score=633731.000000
s hg38.chr19_GL949751v2_alt        945045 215 +   1002683 ttcaagaccagcctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaattggccgggcatggtggcaggcacctgtaattccagctactcgagaggctgaggcagcagaatcgcttgaacccggaaggcggaggttgcagtgagctgagatcgcgccactgcactccagcctgggtgacagagtgagacttcgtc----aaaaaaaaaaaa
s panTro4.chr19                  59938656 217 +  63644993 ttcaagaccagcctgaccaacatagtgaaaccctgtctctactaaaaatacaaaaattggccgggcatggtggcaggcacctgtaattccagctactcgagaggctgaggcaggaggatcgcttgaacccggaaggcggaggttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagtgagacttagtc--aaaaaaaaaaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884336 213 +  60714840 ttcgagaccagcctgaccaacatagtgaaaccccgtctctactaaaaatacaaaagttagccgggcatggtggcaggcacctgtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatagtgccactgcactccagcctgggtgac--agtgagacctcgtc----aaaaaaaaaaaa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364269 218 - 106955855 ttcgagaccagcctgaccaacatagtgaaaccccgtctctactaaaaatacaaaa-ttagccgggcatggtggcaggcacctgtcatcccagctactcgagaggctgaggcaggagaatcgcttgaacccgggaggcggaggttacagtgagctgagatcgcaccactgcactccagcctgggtgacagagtgagacctcgtcaaaaaaaaaaaaaaaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60667543 215 +  64156825 ttcgagaccagcatgacccacagagtgaaaccccgtctctactaaaaatacaaaaatgagccgggcatggtggcatgcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggagccagaagttgcagtgagctgagatcgccccatagcgctccagcctgggtgacagagtgagacttcatc----aaaaaaaaaaaa
i rheMac3.chr19                 C 0 I 35
s macFas5.chr19                  55808743 215 +  59248254 ttcgagaccagcctgacccacagagtgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcatgcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcgccccatagcactccagcctgggtgacagagtgagacttcatc----aaaaaaaaaaaa
i macFas5.chr19                 C 0 I 11
s papAnu2.chr19                  47915790 215 +  51301725 ttcgagaccagcctgacccacagagtgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcatgcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagatcgccccacagcactccagcctgggtgacagagtgagacttcatc----aaaaaaaaaaaa
i papAnu2.chr19                 C 0 I 11
s chlSab2.chr6                   47619461 213 +  50890351 ttcgagatcagcctgacccac--ggtgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggagacggaggttgcagtgagctgagatcgccccactgcactccagcctgggtgacagagtaagacttcatc----aaaaaagaaaag
i chlSab2.chr6                  C 0 I 2
s calJac3.chr22_GL285922_random     35202 215 +    138250 ttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgagtgtggtggcgcacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagatcacaccactgcactccagcctagatgatagagtgagactccatc----aaaaaaaggaaa
i calJac3.chr22_GL285922_random I 3 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I

a score=52134.000000
s hg38.chr19_GL949751v2_alt        945260 24 +   1002683 aagaaaCCTCCATTCTCCCAGCTG
s panTro4.chr19                  59938873 24 +  63644993 aagaaaCCTCCATTCTCCCAGCTG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884549 24 +  60714840 aagaaaCCTCCGTTCTCCCAGCTG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364487 24 - 106955855 aagaaaCCTCTATTCTCCCAGCTG
i nomLeu3.chr10                 C 0 I 54
s macFas5.chr19                  55808969 24 +  59248254 aagaaaCCTCCATCCTCCCAGATG
i macFas5.chr19                 I 11 C 0
s papAnu2.chr19                  47916016 24 +  51301725 aagaaacctccaTCCTCCCAGCTG
i papAnu2.chr19                 I 11 C 0
s chlSab2.chr6                   47619676 24 +  50890351 aagaaaCCTCCATCCTCCCAGATG
i chlSab2.chr6                  I 2 C 0
s calJac3.chr22_GL285922_random     35417 19 +    138250 -----aCCTACATCCTCCCAGCTG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=5865.000000
s hg38.chr19_GL949751v2_alt        945284 4 +   1002683 CCTG
s panTro4.chr19                  59938897 4 +  63644993 CCTG
i panTro4.chr19                 C 0 I 54
s nomLeu3.chr10                 103364565 4 - 106955855 CCTG
i nomLeu3.chr10                 I 54 C 0
s macFas5.chr19                  55808993 4 +  59248254 CCTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47916040 4 +  51301725 CCTG
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     35436 4 +    138250 CCTG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573 0 +  60714840 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=43445.000000
s hg38.chr19_GL949751v2_alt        945288 38 +   1002683 TAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACC
s panTro4.chr19                  59938955 38 +  63644993 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACT
i panTro4.chr19                 I 54 C 0
s nomLeu3.chr10                 103364569 38 - 106955855 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCTACT
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55808997 38 +  59248254 CAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACC
i macFas5.chr19                 C 0 T 42
s papAnu2.chr19                  47916044 38 +  51301725 CAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACC
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     35440 38 +    138250 AAGCCTGGGGCTTCCTGCCCTCTCGTTTCCTTTGCACC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=7133.000000
s hg38.chr19_GL949751v2_alt        945326 11 +   1002683 TCTGGCCCCGC
s panTro4.chr19                  59938993 11 +  63644993 TATGGCCCCTC
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103364607 11 - 106955855 TATGGCCCCTC
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47916082 11 +  51301725 TATGGCCCCTC
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     35478 11 +    138250 CAGGGCCCCAC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt        945337 1 +   1002683 C
s panTro4.chr19                  59939004 1 +  63644993 C
i panTro4.chr19                 C 0 T 108
s nomLeu3.chr10                 103364618 1 - 106955855 C
i nomLeu3.chr10                 C 0 T 108
s papAnu2.chr19                  47916093 1 +  51301725 C
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573 0 +  60714840 C
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=1746.000000
s hg38.chr19_GL949751v2_alt        945338 3 +   1002683 CCT
s panTro4.chr19                  59938897 3 +  63644993 CCT
i panTro4.chr19                 T 108 C 0
s nomLeu3.chr10                 103364511 3 - 106955855 CCT
i nomLeu3.chr10                 T 108 C 0
s papAnu2.chr19                  47916094 3 +  51301725 CCT
i papAnu2.chr19                 C 0 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573 0 +  60714840 C
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=27381.000000
s hg38.chr19_GL949751v2_alt        945341 51 +   1002683 GCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCCGCC
s panTro4.chr19                  59938900 51 +  63644993 GCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i panTro4.chr19                 C 0 T 54
s nomLeu3.chr10                 103364514 51 - 106955855 GCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i nomLeu3.chr10                 C 0 T 54
s papAnu2.chr19                  47916043 51 +  51301725 GCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCTCC
i papAnu2.chr19                 T 54 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=29127.000000
s hg38.chr19_GL949751v2_alt        945392 54 +   1002683 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCCGCC
s panTro4.chr19                  59938897 54 +  63644993 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i panTro4.chr19                 T 54 T 54
s nomLeu3.chr10                 103364511 54 - 106955855 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i nomLeu3.chr10                 T 54 T 54
s papAnu2.chr19                  47916040 54 +  51301725 CCTGCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCTCC
i papAnu2.chr19                 T 54 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=29127.000000
s hg38.chr19_GL949751v2_alt        945446 54 +   1002683 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCCGCC
s panTro4.chr19                  59938897 54 +  63644993 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i panTro4.chr19                 T 54 C 0
s nomLeu3.chr10                 103364511 54 - 106955855 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i nomLeu3.chr10                 T 54 T 54
s papAnu2.chr19                  47916040 54 +  51301725 CCTGCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCTCC
i papAnu2.chr19                 T 54 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=28734.000000
s hg38.chr19_GL949751v2_alt        945500 54 +   1002683 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCCGCC
s panTro4.chr19                  59938951 54 +  63644993 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACTTATGGCCCCTCC
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103364511 54 - 106955855 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i nomLeu3.chr10                 T 54 C 0
s papAnu2.chr19                  47916040 54 +  51301725 CCTGCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCTCC
i papAnu2.chr19                 T 54 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=26564.000000
s hg38.chr19_GL949751v2_alt        945554 51 +   1002683 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCC
s panTro4.chr19                  59939005 51 +  63644993 CCTGCAGCCCAGGGCTTCCTGCTCTCCCACTTCCTTCCCACTTACGGCCCC
i panTro4.chr19                 C 0 T 54
s nomLeu3.chr10                 103364565 51 - 106955855 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCTACTTATGGCCCC
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47916040 51 +  51301725 CCTGCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCC
i papAnu2.chr19                 T 54 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=2484.000000
s hg38.chr19_GL949751v2_alt        945605 6 +   1002683 GCCCCT
s panTro4.chr19                  59939002 6 +  63644993 TCCCCT
i panTro4.chr19                 T 54 C 0
s nomLeu3.chr10                 103364616 6 - 106955855 TCCCTT
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47916091 6 +  51301725 TCCCCT
i papAnu2.chr19                 C 0 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573 0 +  60714840 C
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt        945611 1 +   1002683 G
s panTro4.chr19                  59939008 1 +  63644993 G
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103364622 1 - 106955855 G
i nomLeu3.chr10                 C 0 T 54
s papAnu2.chr19                  47916043 1 +  51301725 G
i papAnu2.chr19                 T 54 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573 0 +  60714840 C
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=19392.000000
s hg38.chr19_GL949751v2_alt        945612 37 +   1002683 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCAC
s panTro4.chr19                  59939009 37 +  63644993 CAGCCCAGGGCTTCCTGCTCTCCCACTTCCTTCCCAC
i panTro4.chr19                 C 0 T 149
s nomLeu3.chr10                 103364569 37 - 106955855 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCTAC
i nomLeu3.chr10                 T 54 C 0
s papAnu2.chr19                  47916044 37 +  51301725 CAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCAC
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=2260.000000
s hg38.chr19_GL949751v2_alt        945649 13 +   1002683 CTCTGGCGCCGCC
s nomLeu3.chr10                 103364606 13 - 106955855 TTATGGCCCCTCC
i nomLeu3.chr10                 C 0 T 108
s papAnu2.chr19                  47916081 13 +  51301725 CTATGGCCCCTCC
i papAnu2.chr19                 C 0 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I
e panTro4.chr19                  59939046 149 +  63644993 T

a score=28425.000000
s hg38.chr19_GL949751v2_alt        945662 54 +   1002683 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCTTTCCCACCTATGGCCGCGCC
s panTro4.chr19                  59938897 54 +  63644993 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i panTro4.chr19                 T 149 C 0
s nomLeu3.chr10                 103364511 54 - 106955855 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i nomLeu3.chr10                 T 108 T 54
s papAnu2.chr19                  47916040 54 +  51301725 CCTGCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCTCC
i papAnu2.chr19                 T 54 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=1953.000000
s hg38.chr19_GL949751v2_alt        945716 4 +   1002683 CCTA
s panTro4.chr19                  59938951 4 +  63644993 CCTG
i panTro4.chr19                 C 0 T 54
s nomLeu3.chr10                 103364511 4 - 106955855 CCTG
i nomLeu3.chr10                 T 54 C 0
s papAnu2.chr19                  47916040 4 +  51301725 CCTG
i papAnu2.chr19                 T 54 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573 0 +  60714840 C
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=26781.000000
s hg38.chr19_GL949751v2_alt        945720 50 +   1002683 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCCGCC
s panTro4.chr19                  59938901 50 +  63644993 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i panTro4.chr19                 T 54 C 0
s nomLeu3.chr10                 103364515 50 - 106955855 CAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCTCC
i nomLeu3.chr10                 C 0 T 54
s papAnu2.chr19                  47916044 50 +  51301725 CAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCTCC
i papAnu2.chr19                 C 0 T 54
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=27534.000000
s hg38.chr19_GL949751v2_alt        945770 52 +   1002683 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTACGGCCCCG
s panTro4.chr19                  59938951 52 +  63644993 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACTTATGGCCCCT
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103364511 52 - 106955855 CCTGCAGCCCAGGGCTTCCTGCCCTCCCACTTCCTTCCCACCTATGGCCCCT
i nomLeu3.chr10                 T 54 C 0
s papAnu2.chr19                  47916040 52 +  51301725 CCTGCAACCCAGGGCTTCCTGCCCTCCCACGTCCTCCCCACCTATGGCCCCT
i papAnu2.chr19                 T 54 C 0
e canFam3.chr1                   20080546 5509 - 122678785 I
e ponAbe2.chr19                  56884573  0 +  60714840 C
e calJac3.chr22_GL285922_random     35489  0 +    138250 C
e chlSab2.chr6                   47619700  0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=2000.000000
s hg38.chr19_GL949751v2_alt        945822 2 +   1002683 CC
s panTro4.chr19                  59939003 2 +  63644993 CC
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103364563 2 - 106955855 CC
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47916092 2 +  51301725 CC
i papAnu2.chr19                 C 0 T 54
s canFam3.chr1                   20086055 2 - 122678785 CC
i canFam3.chr1                  I 5509 C 0
e ponAbe2.chr19                  56884573 0 +  60714840 C
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e chlSab2.chr6                   47619700 0 +  50890351 C
e macFas5.chr19                  55809035 42 +  59248254 T
e rheMac3.chr19                  60667758 35 +  64156825 I

a score=113569.000000
s hg38.chr19_GL949751v2_alt        945824 42 +   1002683 CCTGCAGCCCAGGGCT--TCCTGCCCTCCCACTTCCTTCCCACT
s panTro4.chr19                  59939005 42 +  63644993 CCTGCAGCCCAGGGCT--TCCTGCTCTCCCACTTCCTTCCCACT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884573 42 +  60714840 CCTGCAGCCCAGGGCT--TCCTGCCCTCCCACTTCCTTCCCACT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364565 42 - 106955855 CCTGCAGCCCAGGGCT--TCCTGCCCTCCCACTTCCTTCCTACT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60667793 42 +  64156825 CCTGCAACCCAGGGCT--TCCTGCCCTCCCACGTCCTCCCTACC
i rheMac3.chr19                 I 35 C 0
s macFas5.chr19                  55808993 42 +  59248254 CCTGCAACCCAGGGCT--TCCTGCCCTCCCACGTCCTCCCCACC
i macFas5.chr19                 T 42 C 0
s papAnu2.chr19                  47916040 42 +  51301725 CCTGCAACCCAGGGCT--TCCTGCCCTCCCACGTCCTCCCCACC
i papAnu2.chr19                 T 54 C 0
s chlSab2.chr6                   47619700 42 +  50890351 CCTGCAACCCAGGGCT--TCCTGCCCTCCCACTTCCTCCCCACC
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20086057 44 - 122678785 TCCAAAGCCTCAGGCTTCTCCTCGCCTCCCACCCCCTTCACACC
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     35489  0 +    138250 C

a score=2548.000000
s hg38.chr19_GL949751v2_alt        945866 1 +   1002683 T
s panTro4.chr19                  59939047 1 +  63644993 T
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884615 1 +  60714840 T
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364607 1 - 106955855 T
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60667835 1 +  64156825 T
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47916082 1 +  51301725 T
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47619742 1 +  50890351 T
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20086101 1 - 122678785 T
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     35489 0 +    138250 C
e macFas5.chr19                  55809035 0 +  59248254 C

a score=25753.000000
s hg38.chr19_GL949751v2_alt        945867  9 +   1002683 -ATGGCCCCT
s panTro4.chr19                  59939048  9 +  63644993 -ACGGCCCCT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884616  9 +  60714840 -ACGGCCCCT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364608  9 - 106955855 -ATGGCCCCT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60667836  9 +  64156825 -ATGGCCCTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55809035  9 +  59248254 -ATGGCCCCT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47916083  9 +  51301725 -ATGGCCCCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47619743  9 +  50890351 -ATGGCCCCC
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20086102 10 - 122678785 GTTGGCCCCT
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     35489  0 +    138250 C

a score=15792.000000
s hg38.chr19_GL949751v2_alt        945876 5 +   1002683 CCCTT
s panTro4.chr19                  59939057 5 +  63644993 CCCTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56884625 5 +  60714840 CCCTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364617 5 - 106955855 CCCTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60667845 5 +  64156825 CCCCT
i rheMac3.chr19                 C 0 I 1
s macFas5.chr19                  55809044 5 +  59248254 CCCCT
i macFas5.chr19                 C 0 I 1
s papAnu2.chr19                  47916092 5 +  51301725 CCCCT
i papAnu2.chr19                 C 0 I 1
s chlSab2.chr6                   47619752 5 +  50890351 CACTC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     35489 5 +    138250 CCCTT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20086112 5 - 122678785 CCCCT
i canFam3.chr1                  C 0 C 0

a score=2106978.000000
s hg38.chr19_GL949751v2_alt        945881 651 +   1002683 GGAATGGCCATCAGGACCTATAAAGGCTGAGGAAGAAAGGTTTGGTCTGCACTACCCCTACCTGTGACCACAAGCTCCAGGGGGTCGCTGGGGGCTGACCACAGGTATGGGTCCCTGCTGGAGAAGCTGTAGCATCGGTAGGTTCCGCTGTGGGCGGCGGTCACCGTGATGATGGGAAAACTAGCCCTGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGAGTCTGACACTGTAGGGTTACGTCCCCTCCTGACGACACCGCCGGGCCGGGCTGGGCTGAGAGCGAGGGTTTGGCAAAAACTCCTGGGAGAAAAAG-AAAGTCTGATGTTGAAGGCAGGAGCCAGCATCTCAGC--TGAGACTGGGGAGGTCCCCACACCTGCCTAAGAGCTGGGGAGCTTTTT-----------------GGCTGTATCCCTCCCAGAGAGCGCACTCCCCCACCCA--AGCT--CACAGAGAGGTCGAGTC-ACCCAGTGGTTGAGGAAG-GAGGCTGT--GCTCACGTCCTAGTGcttgggtgcaaatcctagttctgccttcaggggcctggtggccctggagacaaatct--ccctctgtatctgagcctcactgccttgttctgttaaaatggggatgactg
s panTro4.chr19                  59939062 629 +  63644993 GGAATGGCCATCAGGACCTATAAAGGCTGAGGAAGAAAGGTTTGGTCTGCACTACCCCTACCTGTGACCACAAGCTCCAGGGGGTCGCTGGGGGCCGACCACAGGTATGGGTCCCTGCTGGAGAAGCTGTAGCATCGGTAGGTTCCGCTGTGGGCGGCGGTCACCGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGAGTCTGACACTGTAGGGTTACGTCCCCTCCTGAGGACACCGCCGGGCTGGGCTGGGCTGAGAGCGAGGGTTTGGCAAAAACTCCTGGGAGAAAAAT-AAAGTCTGATGTTAAAGGCAGCAGCCAGCATCTCAGC--TGAGACTGGGGAGGTCCCCACACCTGCCTAAGAGCTGGGGAGCTT---------------------------------------AGCGCACTCCCCCACCCA--AGCT--CACAGAGAGGTCGAGTC-ACCCAGTGGTTGAGGAAG-GAGGCTGT--GCTCACGTCCTAGTGcttgggtgcaaatcctagttctgcctgtaggggcctggtggccctggagacaaatct--ccctccgtatctgagcctcgctgccttgttctgttaaaatggggatgactg
i panTro4.chr19                 C 0 I 1
s ponAbe2.chr19                  56884630 653 +  60714840 GGAATGGCCATCAGGACCTATAAAGGCTGAGGAAGAAAGGTTTGGTCTGCACCACCCCTACCTGTGACCACGAGCTCCAGGGGGTCACTGGGGGCCGACCACAGGTATGGGTCCCCACTGGAGAAGCTGTAGCATCGGTAGGTTCCGCTGTGGGCGGCGGTCACCGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGAGTCTGACACTGTAGAGTTACGTCCCCTCCTGAGGACACCGCTGGGCCGGGCTGGGCTGAGAGCGAGGGCTTGGCAAAAACTCCTGGGAGAAAAGGAAAAGTCTGATGTTAAAGGCAGCAGCCAGCATCTCAGC--TGAGACTGGGGAGGTCCCCACACCTGCCTAAGGGCTGGGGAGCTTTTT-----------------GGCTGTATCCCTCCCAGAGAGCGCACTCCCCCACCCA--AGCT--CACAGAGAGGTGAGGTTGAGGAAGTGGTTGAGGAAGCGAGGCTGT--GCTCACGTCCTAGTGcttgggtgaaaatcctagttctgcctttaagggcctggt-gccctggagacaaatct--ccctctgtatctgagcctcactgccttgttctgttaaaatggggatgaCTG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103364622 651 - 106955855 GGAATGGCCATCAGGACCTATAAAGTCTGAGGAAGAAAGGTTTGGTCTGCACCACCCCTACCTGTGACCAGGAGCTCCAGGGGGTCGCTGGGGGCCGACCACAGGTATGGGTTCCCGCTGGAGAAGCTGTAGCATCGGTAGGTTCCGCTGTGGGCGGCGGTCACTGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGAATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCTTCCTGAGTCTGACACTGTAGGGTTACGTCCCCTCCTGAGGACACCGCCGGGCCTGGCTGGGCTGAGAGCGAGGGCTTGGCAAAAACTCCTGGGAGAAAAGG-AAAGGCTGATGTTAATGGCAGCAGCCAGCATCTCAGC--TGAGACTGGGGAGGTCCCCACACCTGCCTAAGAGCTGGGGAGGTTTTT-----------------GGCCGTATCCCTCCCAGAGAGTGCACTCCCCCACCCA--AGCT--CACAGACAGGTCGGGTC-ACCGAGTGGTTGAGGAAGCGAGGCTGT--GCTCACGTCCTAGTGcttgggtgcaaatcctagttgtgcctttaagggcctggtggccctggagacaaatct--ccctctgtgtctgagcctcactgccttg-tctgttaaaatgggggtgactg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60667851 664 +  64156825 GGAATGGCCCTCAGGACCTACAAAGGCTGAGGAACAAAGGTTTGGTCTGCACCACCCCTACCTGTGACCATGAGCTCCAGGGGGTCGCTGGGAGCCGACCACAGGTATGGGTCCCCGCTGGAGAAGCTGTAGCACCGGTAGGTTCCGCTGTGGGCAGCGGTCACCGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGGGTCTGACACTGTAGGGTCACGTCCCCTCCTGAGGACACCGCCGGGCCGGGCTGGGCTGAGAGCGAGGGCTTGGCAAAAACTCCTGGGAAAAAAGG-AAAGTCTGATGTTAAAGGCAGCAGCCAGCATCTCAGC--TCAGACTGGGGAGGTGCCCACACCTGCCTGAGAGCTGGGGAGCTTTCTGGCTGTATCCCTCCCAGGGCTGTATCCCTCCCAGACAGCACACTCCCCCACCCA--AGCTCACACAGAGAGGTCAAG-C-ACCAagtggttgaggaagcgaggctgtgtgcccacatcctagtgcctgggtgcgaatcctggttctgcctttaa-------gtggccccggagacaaatct---cctctgtatctgagcctcactgccttgttctgctaaaatggggatgatcg
i rheMac3.chr19                 I 1 C 0
s macFas5.chr19                  55809050 645 +  59248254 GGAATGGCCCTCAGGACCTACAAAGGCTGAGGAACAAAGGTTTGGTCTGCACCACCCCTACCTGTGACCATGAGCTCCAGGGGGTCGCTGGGAGCCGACCACAGGTATGGGTCCCCGCTGGAGAAGCTGTAGCACCGGTAGGTTCCGCTGTGGGCAGCGGTCACCGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGGGTCTGACACTGTAGGGTCACGTCCCCTCCTGAGGACACCGCCGGGCCGGGCTGGGCTGAGAGCGAGGGCTTGGCAAAAACTCCTGGGAGAAAAGG-AAAGTCTGATGTTAAAGGCAGCAGCCAGCATCTCAGC--TCAGACTGGGGAGGTGCCCACACCTGCCTGAGAGCTGGGGAGCTTTCT-----------------GGCTGTATCCCTCCCAGACAGCACACTCCCCCACCCA--AGCT--CACAGAGAGGTCAAG-C-ACCAagtggttgaggaagcgaggctgtgtgcccacatcctagtgcctgggtgcgaatcctggttctgcctttaa-------gtggccccggagacaaatct---cctctgtatctgagcctcactgccttgttctgctaaaatggggatgatcg
i macFas5.chr19                 I 1 C 0
s papAnu2.chr19                  47916098 647 +  51301725 GGAATGGCCCTCAGGACCTACAAAGGCTGAGGAAGAAAGGTTTGGTCTGCACCACCCCTACCTGTGACCATGAGCTCCAGGGGGTCGCTGGGAGCCGACCACAGGTATGGGTCCCTGCTGGAGAAGCTGTAGCACCGGTAGGTTCCGCTGTGGGCAGCGGTCACCGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGGGTCTGACACTGTAGGGTCACGTCCCCTCCTGAGGACACCGCCGGGCCGGGCTGGGCTGAGAGCGACGGCTTGGCAAAAACTCCTGGGAGAAAAGG-AAAGTCTGATGTTAAAGGCAGCAGCCAGCATCTCAGC--TGAGACTGGGGAGGTGCCCACACCTGCCTGAGAGCTGGGGAGCTTTCT-----------------GGCTGTATCCCTCCCAGACCGCACACTCCCCCACCCA--AGCT--CACAGAGAGGTCAAGTC-ACCGAGTGGTTGAGGAAGCGGGGCTGTGCGCTCACATCCTAGTGCCTGGGtgcaaatcctggttctgccttTAA-------GTGGCCCCGGAGACAAATCT--CCCTCTGTGTCTGAGCCTCAGTGCCTTGTTCTGCTAAAACGGGGATGATCG
i papAnu2.chr19                 I 1 C 0
s chlSab2.chr6                   47619757 646 +  50890351 CGAATGGCCCTCAGGACCTACAAAGGCTGAGGAAGACAGGTTTGGTCTGCACCACCCCTACCTGTGACCATGAGCTCCAGGGGGTCGCTGGGAGCCGACCACAGGTATGGGTCCCTGCTGGAGAAGCTGTAGCACCGGTAGGTTCCGCTGTGGGCAGCGGTCACCGTGATGATGGGGAAACTAGCCCGGTACCATCTCTCGGGATTCTTGTAGGGCGCAGGGTCCCCTTCCTTGTACAGAGCAAATTGGTCAAAGCCATACCGGGTCTGACACTGTAGGGTCACGTCCCCTCCTGAGGACACCGCCGGGCCGGGCTGGGCTGAGAGCGAGGGCTTGGCAAAAACTCCTGGGAGAAAAGG-AAAGTCTGATGTTAAAGGCAGCAGCCAGCGTCTCAGC--TGAGACTGGGGAGGTGCCCACACCTGCCTGAGAGCTGGGGAGCTTTCT-----------------GGCTGTATCCGTCCCAGACAGCGCACTCCCCCAGCCA--AGCT--CACAGAGAGGTCAAG-C-ACCGAGCGGTTGAGGAAGCGAGGCTGTGTGCCCACATTCTAGTGcctgggtgcgaatcccggttctgcctttaa-------gtggccccggagacaaatct--ccctctgtgtctgagcctcagtgccttgttctgctaaaatggggatgatcg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     35494 637 +    138250 GGAATGGCTATCAGGACCTAAAAAGGTTGAGGAAGAAAGGTTTGGTCTGCAACACCCCTACCTGTGACCACGAGCTCCAGGGGATCACTGGGGGCCGACCACAGGTATGGGGCCCTTCTGGAGAAGCTGTAGCAGCGGTAGGTCCCGCTGTGGGCAGCGGTTACCGTGGTGATGGGGAAGCTAGCCCGGTACCATCTCTCGGGGTTCCTGTAGGGTCCAGGGTCGCCGTCCTTGTACAGAGCAAATTGGTCAAAGCCATATTTGGTCTGACACCGTAGGGTCACATCCCCTCCTGGGGACACTGCCGGGCCAGGCTGGGCTGAGAGCGAGGGCTTAGGAAAAACTCCTGGGAGAAAAGG--AAGTCTGGTGTTAAAGGCG------AGTATCTCAGC--TGGGGCT-GGGAGGTCCCCCCGCCTGCCCAA--GCTGGGGAGCTTTAT-----------------GGCTGTATCCCTCCCAG--AGTGCACTCCCTTGCCCC--AGCT--CAGAGAGAGGTCAAGTC-A-TGAATGGTTTACAGAGTGAGGCTGT--GCCCACATCCTAGTGctt-ggtgcaaaccctggttctgcccttaggggcta-gtggccctggagaccaatct--ccctctgtatctgagcctcactaccttgttttgttaaagtggggatgattg
i calJac3.chr22_GL285922_random C 0 I 661
s canFam3.chr1                   20086117 615 - 122678785 GGAACTTCCACCAGAGTATGCAAGAGCTGAAGAAGAAAGGCTTGGACTGCATCTCCCTCACCTGTTACCACAAGCTCCAGGGGGTCGCTGGGGGCTGACCACAGGTACGGGAACTTGCTGGAAAAGCTATAGCATCGGTAGATCCCACTGTGGGCAACAGTCACTGCGGTGATGGGGAAATTGGCCCAGTACTGTTCTGCAGATTGCTTGTGGGGCTCAGTGTCCCCCTCCTTGTACAGAGCGAATTGGTCAAAACTGTATTTACTCTGACATCGTAGAGTGACATCCCCTCCTTGGGACACAGCCAGGCTGGGCTGGGCTGAGAGTGAGGGCTTAGCATAAACTCCTGGTTGAAAAGA-GAGCTCTGGTGTTAAAGACCATGGAAAGTGTGTTGACCATGGGGGTAGGAAGATTCCCCCCACCTCCTAAGAGCTAGGAAACTCTTC-----------------AGGTATATCCCTTCTAGAGAACCCACTCACCCTGCTACCAACT--CACAAAAGGGT-----T-A----------AAGGGAGCATGACCAA--GATCATATCACAGTTCCCAGGCTCAAAT----------CGCTTAGGGGCTGTGTGATCCTGGAGATAAACCTACCCCTCTATCTGTGTGCCTCAGTGTTCTTTACTG------------------
i canFam3.chr1                  C 0 C 0

a score=126354.000000
s hg38.chr19_GL949751v2_alt        946532 56 +   1002683 aatgagacagtacacagtaa----tttgcagag-tgcctgttgcctag-caagcgctg------------gagt
s panTro4.chr19                  59939692 52 +  63644993 aatgagacagtacacagtaa----tttgcagag-tgcccgttgcctag-caggcgctg----------------
i panTro4.chr19                 I 1 C 0
s ponAbe2.chr19                  56885283 69 +  60714840 AATGAGACAGTACACAGTAA----TTTGCAGAG-TGCCTGTTGCCTAGCCAAGCCCTGGAAATAAGACGGGAGT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103365273 56 - 106955855 aatgagacagtacacagtaa----tttgcagag-tgcctgttgcctag-caagcactg------------gagt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60668515 72 +  64156825 aacgagacagtacacagtaagcatttagcagag-tgcctgttgcctag-caagcgcttgaaatgagatgggagT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55809695 72 +  59248254 aacgagacagtacacagtaagcatttagcagag-tgcctgttgcctag-caagcgcttgaaatgagatgggagT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47916745 72 +  51301725 AACGAGACAGTACACAGTAAGCATTTAGCAGAG-TGCCTGTTGCCTAG-CAAGCGCTTGAAATGAGATGGGAGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620403 72 +  50890351 aacgagacagtacaccgtaagcatttagcagag-tgcctgttgcctag-cgagcgcttgaaatgagatgggagT
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20086732 59 - 122678785 AATGAAACAA--------------CTAACAGAGTTGCCTAATGCATAG-GGAGCTCCCAAACTATGATGGTagt
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     36131 661 +    138250 I

a score=155781.000000
s hg38.chr19_GL949751v2_alt        946588 55 +   1002683 aagtaaatagctTAAGCTTATACTGTG--CTGTAAGCTTGTATTGCCACATACAATT
s panTro4.chr19                  59939744 55 +  63644993 aagtaaatagCTTAAGCTTATACTGTG--CTGTAAGCTTGTATTGCCACATACAATT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56885352 55 +  60714840 AAGTAAATAGCTTAAGCTTATACTGTG--CTGTAAGCTTGTATTGCCACATACAATT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103365329 55 - 106955855 aaataaatagctTAAGCTTATACTGTG--CTGTAAGCTTGTATTGCCACATACAATT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60668587 55 +  64156825 ACGTAAACAGCTTAAGCTTATACCATG--CCGTAAGCTTGCATTGCCACATACAATC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55809767 55 +  59248254 ACGTAAACAGCTGAAGCTTATACCATG--CCGTAAGCTTGCATTGCCACATACAATC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47916817 55 +  51301725 AAGTAAACAGCTTAAGCTTATACCATG--CCGTAAGCTTGCATTGCCACATACAATC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620475 55 +  50890351 AAGTAAACAGCTTGAGCTTATACCATG--CCGTAAGCTTGCATTGCCACATACAATC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     36792 55 +    138250 aaaaaaaGAGCTTAAGCTTAGGCTGTG--CCGGAAGCTTACACTGCAGCATGCGATC
i calJac3.chr22_GL285922_random I 661 C 0
s canFam3.chr1                   20086791 57 - 122678785 aacaaaatagcttaatattttaatgcaatttttaaaccaaaattaatgcaaataatt
i canFam3.chr1                  C 0 I 689

a score=247665.000000
s hg38.chr19_GL949751v2_alt        946643 92 +   1002683 GTTACGTTGTAAATGTGGCTGACAGTGCTAGCTTCCGGGTGCCttccaaacttatgatgtatatcagttcagtgaatcct--cagagacctatg
s panTro4.chr19                  59939799 92 +  63644993 GTTACATTGTAAATGTGGCTGACAGTGCCAGCTTCCGGGTGCCttccaaactcatgatatatatcagttcggtgaatcct--cagagacctatg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56885407 92 +  60714840 GTTACATTGTAAACGTGGCTGACAGTGCCAGCTTCCGGGTGCCttccaaactcatgatgtatatcagttcagtgaatcct--cagagacctatg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103365384 92 - 106955855 GTTACGTTGTTAACGTGGCTGACAGTGCCAGCTTCCTGGTGCCttccaaactcatgatgtgtatcagttcagtgaaccct--cagagacctatt
i nomLeu3.chr10                 C 0 I 323
s rheMac3.chr19                  60668642 91 +  64156825 GTTACGTTGGAAACGTGGCTGACGGTGCCAGC-TCTGGGTGCCttccgaactcatgacgcacatcagttcagtgaatcct--cagagacctgtg
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55809822 91 +  59248254 GTTACGTTGGAAACGTGGCTGACGGTGCCAGC-TCTGGGTGCCttccgaactcatgacgcacatcagttcagtgaatcct--cagagacctgtg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47916872 91 +  51301725 GTTACGTTGGAAACGTGGCTGACGGTGCCAGC-TCTGGGTGCCTTCCAAACTCATGACGTACATCAGTTCAGTGAATCCT--CAGAGACCTGTG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620530 91 +  50890351 GTTACGTTGGAAACGTGGCTGACGGTGCCAGC-TCCGGGTGCCttccgaactcatgccgtacatcagttcagtgaatcct--cagagacctgtg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     36847 94 +    138250 ATTCCATCGCAAACGTGGGTGAAAGTGCCAGCTTccaggtgccttccaaactcaggacatgtatcaattcagtgaatcctcacagatacctaca
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I

a score=121802.000000
s hg38.chr19_GL949751v2_alt        946735 40 +   1002683 gagtcctcactcttaatgtccctattttataaatgaaact
s panTro4.chr19                  59939891 40 +  63644993 gagtcctcactgttaatgtccctattttataaatgaaact
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56885499 40 +  60714840 gagtcttcactcttaatgtccctattttataaatgaaact
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103365799 40 - 106955855 gagtcctcactcttaaagtccctattttataaatgaaact
i nomLeu3.chr10                 I 323 C 0
s rheMac3.chr19                  60668733 40 +  64156825 gagtcctcactcttaatgtccctattttataaatgaaact
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55809913 40 +  59248254 gagtcctcactcttaacgtccctattttataaatgaaact
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47916963 40 +  51301725 GAATCCTCACTCTTAacatccctattttataaatgaaact
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620621 40 +  50890351 gagtcctcactcttaacgtccctattttataaatgaaact
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     36941 40 +    138250 aggtcatcactattaatgtccctattttataaatgaAACT
i calJac3.chr22_GL285922_random C 0 I 3745
e canFam3.chr1                   20086848 689 - 122678785 I

a score=530837.000000
s hg38.chr19_GL949751v2_alt        946775 247 +   1002683 aaggcacatggcattaaataatttgtccaactctaggtaacaatactgcagtgtacagctgaaatttgctaagagggtagattataagtattctcacacacaa---aaaagttaactgtgtcaggtgatgtatgttaattagcttgctag-tagtaactgtctcacagtggattcgtatatcaaaacatcaacttgtacaccttggatatattccatttttgtttttcaattatacctcaacaaagctgga
s panTro4.chr19                  59939931 243 +  63644993 aaggcacatggcattaaataatttgtccaactctaggtaacaatactgcagtgtgcagctgaaatttgctaagagggtagattataagtgttctcacacacaa---aaaagttaactgtgtcaggtgatgtatgttaattagcttgctag-tggtaactgtctcacagtggattcgtatatcaaaacatcaacttctacaccttggatatattccatt----tttttcaattatacctcaacaaagctgga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56885539 248 +  60714840 aaggcacatggcattaaataatttgtccaactctgggtaacaatactgcagtgtacacctgaaatttgctaagagggtagattataagtgttctcacacacaa---aaaagttaactgtgtgaggtgatgtatgctaattagcttgctagttggtggttgtctcacagtggattcgtatatcaaaacatcaacttgtatgccttggatatattccatttttgtttttcaattatacctcaacaaaactgga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103365839 247 - 106955855 aaggcacatggcattaaataatttgtccaactctaggtaacaatactgcagtgtacacctgaaatttgctaagagggtagattataagtgttctcacacacaa---aaaagttaactgtgtgaggtgatgtgtgttaattagcttgctag-tggtaactgtctcaccgtggattcgtatatcaaaacatcaacttgtacaccttggatatattccatttttatttttcaattatatctcaacaaagctgga
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60668773 240 +  64156825 aaggcacatggcgtt----aatttgtccaaCCCtaggtaacaagacagcagtgcgtacttgaaatttgctaagagggtagattataagtgttctcacactcaaaagaaaagttaactgtgcgaggtgatgtatgttaattagcttgctcg-tggtaactgtctcacagtggatacgtacatcaaaaca------tgtatgccttggatatgttccatttttgtttttcaattataactcaacaaacctgga
i rheMac3.chr19                 C 0 I 325
s macFas5.chr19                  55809953 240 +  59248254 aaggcacatggcgtt----aatttgtccaaCCCtaggtaacaagacagcagtgcgtacttgaaatttgctaagagggtagattataagtgttctcacactcaaaagaaaagttaactgtgcaaggtgatgtatgttaattagcttgctcg-tggtaactatctcacagtgggtacgtacatcaaaaca------tgtacgccttggatatgttccatttttgtttttcaattataactcaacaaacctgga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47917003 244 +  51301725 aAGGCATATGGCGTTAAAGAATTTGTCCAACCCCAGGTAACAAGACGGCAGTGCGTACTTGgaatttgctaagagggtagattATAAGTGTTCTCACACGCAAAAGAAAAGTTAACTGTGCGAGGTGatgtatgttaattagcttgctCG-TGGTAACTATCTCACAGTGGATACGTACATCAAAACA------TGTACGCCTTGGATatgttccatttttgtttttcaattataACTCAACAAacctgga
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620661 244 +  50890351 aaggcacatggcgttaaagaatttgtccaaCCCtaggtaacaagacagcagtgcgtacttgaaatttgctaagagggtagatcataagtgttctcacacgcaaaagaaaagttaactgtgcgaggtaatgtatgttaattagcttgctcg-tggtaactatctcacagtggatacgtacatcaaaaca------tgtacgtcttggatatgttccatttttgtttttcaattataactcaacaaacctgga
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I

a score=1265.000000
s hg38.chr19_GL949751v2_alt        947022 4 +   1002683 cata
s panTro4.chr19                  59940174 4 +  63644993 cata
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56885787 4 +  60714840 catt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103366086 4 - 106955855 catt
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55810193 3 +  59248254 -aaa
i macFas5.chr19                 C 0 I 327
s papAnu2.chr19                  47917247 3 +  51301725 -aaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620905 3 +  50890351 -aaa
i chlSab2.chr6                  C 0 I 1
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e rheMac3.chr19                  60669013 325 +  64156825 I

a score=1231361.000000
s hg38.chr19_GL949751v2_alt        947026 577 +   1002683 ttttaatttaaaaataaataaaaaacttgtccaagatcataagtggcagagttgaaatctgcactcacagagtttgattccagggtctccgctcctaaacacgaacctacactACTCTGATGTGAGGTTGTTGTCATAGACCGGTGTGGTGATGCATGCCTGCACACAGGAGTCAGAAAAACAAAGGTTGAGgctgggtgcggcggctcacaccggtcatcccagcactttgggaggccaaggtgggaggatcgcttgagcccaggaa-----------------ggcgaggctgcagtgagctatgatcactgtacactagcctgggtgacagagtgagaccttgtctc-aaaaaaagacagagagagaaAGCAAAAGAAAGGAAGTAAGGAAGATAAAAATATAAGCTGCCTAATAATTATGGCATTCACTCAACAAGAAGAAaaagaaa---gaaagaggaaggaagggaggg----agggaggaa--------ggaaggaaggaaATATATAAGCTGCCTGATAACTGTAACATTCACTCAGCAATATTTTCTCTTAATTTTCACTTAAGCAACTATTATGTGTCTGTCTGTAttctttttttgtt
s panTro4.chr19                  59940178 576 +  63644993 ttttaatttaaaaataaataaaaaacttgtccaagatcataagtggcagagttgaaatctgcactcacggagtttgattccagggtctccactcctaaacacgaacctacactACTCTGATGTGAGGGTGTTGTCATAGACTGGTGTGGTGATGCATGCCTGCACACAGGAGTCAGAAAAACAAAGGTTGAGgctgggtgcggcggctcacaccagtcatcccagcactttgggaggccaaggtgggaggatcacttgagcccaggaa-----------------ggcgaggctgtagtgagccatgatcactgtacactagcctgggtgacagagtgagaccttgtctc-aaaaaaagac----agagaaagcaaaagaaaGGAAGTAAGGAAAATAAAAATATAAGCTGCCTGATAATTATGGCATTCACTCAACAAGAAGAAAAAGAAA---Gaggaaggaagggagggagggaggaaggaaggaa--------ggaaggaaggaaATATATAAGC-GCCTGATAACTGTAACATTCACTCAGCAATATTTTCTCTTAATTTTCACTTAAGCAACTATTATGTGTCTGTCCGTATTCtttttttgtt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56885791 567 +  60714840 ttttaatttaaaaataaataaataacttgtccaagatcataagtggcagagttgcaatctgcactcacggagtttgattccagggtctccactcgtaaacacaaacctacactgCTCTGATGTGAGGGTATTGTCATCGTCCAGTGTGGTGATGCACGTCTGCACACAGGAGTC-GGAAAACAAAGGTTGAGgctgggtgcggcggctcgcaccggtcatcccagcactttgggaggccgaggtgggaggatcgcttgagcctaggaa-----------------ggcgaggctgcagtgagccatgatcactgtacaccagcgtgggtgacagagtgagaccttgtctc-aaaaaaagac--agagagaaaGCAAAAGAAAGGAAGTAAGG-AGAGAAAAATATAAGCTGCTTGATAATTATGGCATTCACTCAACAAGAAGAAAAAGAAG---GAGAAAG------aggaagga----agggaggga--------ggaaggaaagaaATATATAAGCTGCCTGATAATTGTAACATTCACTCAGCAATATTTTCTCTTAATTTTCACTTAAGCAACTATTATGTGTCTGTCTATATTCTttttttgtt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103366090 569 - 106955855 tttaaatttaaaaataaataaaaaacttgtccaagatcgtaagtggcagagttgaaatctgcactcacagagtttgattccagggtctccactcctaaacacgaacctacactACTCTGATGTGAGGGGATTGTCATAGACCGGTGTGGTGATGCATGCCTGCACACAGGAGTcagaaaaacaaaggttgaggctgggtgcggcggctcacaccggtcatcccagcactttgggaggccaaggtgggaggatcgcttgatcctaggaa-----------------ggcgaggctgcagtgagccatgatcactgtacactagcctcggtgacagagtgagaccttatctc-aaaaaaagac----agagaaagcaaaagaaaGGAAGTAAGGAAGAGAAAAATATAAGCTGCCTGAAAATTATGGCATTCACTCAAC---AAGAAaaagaaa---gaaagaggaagggagagaggg----aggaaggaa--------ggaaggaaggaaATATATAAGCTGCCTGATAACTGTAACATTCACTCAGCAATATTTTCTCTTAATTTTCACTTAAGCAACTATTATGTGTCTGTCTGTATT-Tttttttgtt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60669338 577 +  64156825 ttttaatttaaaaataaataaataacttgtccaagatcataaggggcggagctgaaatttgcactcacagagtttgattctagggtctccactcctcagcacgaacctacactACTCTGATGTGAGGGTATTGTCGTAGTCCGGTGCGGTGATGCATGCCTGCACCCAGGAGTCAGT-AGACAAAGGTTGAGgccaggggcggcggctcacaccggtcatcccagcactttgggaggccaatgtgggaggattgcttgagcctaggaannnnnnnnnnnnnnnnn----------------gccatgatcactgtactccagcctgggtgacagagtgagaccttgtctcaaaaaaaagacaaagagagaAACCAAAAGAAAGGAAGTAAGGAAGAGAAAAATATAAACTGCCTGATAATTATGGCATTCACTCAACAAGAAgaaaaaagagaggaaggaaggaagggagagaggg----aggaagggagggtggaaggaaggaaggaaggaTATAAGCTGCCTGATAATCGTAACATTCACTCAGCA------------AATTTTCTCTTAGGCAACTATTAAGTGTCTGTCTGTAttctttttttgtt
i rheMac3.chr19                 I 325 C 0
s macFas5.chr19                  55810523 573 +  59248254 TTTTAATTTAAAAATAAAtaaataacttgtccaagatcataaggggcggagctgaaatttgcactcacagagtttgattctagggtctccactcctcagcacgaacctacactACTCTGATGTGAGGGTATTGTCGTAGTCCGGTGTGGTGATGCATGCCTGCACCCAGGAGTCAGTaagacaaaggttgaggccaggtgcggcggctcacaccggtcatcccagcactttgggaggccaatgtgggaggattgcttgagcctaggaa-----------------gtcgaggctacagtgagccatgatcactgtactccagcctgggtgacagagtgagaccttgtctcaaaaaaaagacaaagagagaaaacaaaagaAAGGAAGTAAGGAAGAGAAAAATATAAACTGCCTGATAATTATGGCATTCACTCAACAAgaagaaaaaagag----aggaaggaagggagagaggg----aggaagagagggtggaaggaaggaaggaaggaTATAAGCTGCCTGATAATCGTAACATTCACTCAGCA------------AATTTTCTCTTAGGCAACTATTAAGTGTCTCTCTGTATTCTTTTTTTGtt
i macFas5.chr19                 I 327 C 0
s papAnu2.chr19                  47917250 565 +  51301725 ttttaaattaaaaataaataaataacttgtccaagatcataaGGGGCAGAGCTGAAATTTGCACTCACGGAGTTTGATTCTAGGGTCTCCACTCCTCAGCACGAACCTACACTACTCTGACGTGAAGGTATT---GTAGTccggtgtggtgatgcatgctcGCACACAGGAGTCAGTAAGATAAAGGttgaggccgggtgcggcggctcacaccagtcatcccagcactttgggaggccaatgtgggaggactgcttgagcctaggaa-----------------gtcgaggctgcagtgagccatgatcactgtactctagcctgggtgacagagtgagaccttgtctc-agaaaaagacaaagagagaaaacaaaagaaaggaagtaaggaagagaaaaatataagctGCCTGATAATTTTGGCATTCactcaacaagaagaaaaaagag----aggaaggaagggagagaggg----aggaagagagggt----ggaaggaaggaaggatataaGCTGCCTGATAATTGTAACATTCACTCAGGA------------AATTTTCTCTTAAGCAACTATTAAGTGTctgtctgtattctttttttgtt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47620909 576 +  50890351 TTTTAATTTAAAAATAAAtaaataacttgtccaagatcataaggggcagagctgaaatttgcactcacggagtttgattctagggtctccactcctcaacacaaacctacactACTCTGACATGAGGGTATTGTCATAGTCCAGTGTGGTGATGCATGCCTGCACCCAGGAGTCAGTAAGACAAAGGTTGAGgccgggtgcagcggctcacaccagtcatcccagcactttgggaggccaatgtgggaggattgcttgagcctaggaa-----------------gtcgaggctgcagtgagccatgatcactatactccagcctgggtgacagagtgagaccttgtctc-aaaaaaagaccaagagagaaaaC----GAAAGGAAGTAAGGAAGAGAAAAATATAAACTGCCTGATAATTATGGCATTCACTCAGTAAGAAGAAAAAAAAA---Gaggaaggaagggagagaggg----aggaagagagggt----ggaaggaaggaaggaTATAAGCTGCCTGATAATTGTAACATTCACTCAGCAA-ATTGTCTCTTAATTTTCTCTTAAGCAACTATTATGTGTCTGTCTGTAttctttttttgtt
i chlSab2.chr6                  I 1 I 23
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I

a score=5010.000000
s hg38.chr19_GL949751v2_alt        947603 17 +   1002683 gtttcatttgttttgtt
s panTro4.chr19                  59940754  6 +  63644993 gtttta-----------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56886358 17 +  60714840 gtttcgtttgttttgtt
i ponAbe2.chr19                 C 0 T 3941
s nomLeu3.chr10                 103366659 10 - 106955855 gtttcgtttg-------
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60669915 13 +  64156825 gttttgttttgtt----
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55811096 13 +  59248254 gttttgttttgtt----
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47917815 13 +  51301725 gttttgttttgtt----
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621485 23 +  50890351 I

a score=11914.000000
s hg38.chr19_GL949751v2_alt        947620 18 +   1002683 ttgttttgttttgtttt-g
s panTro4.chr19                  59940760 14 +  63644993 ----tttgttttgtttt-g
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103366669 14 - 106955855 ----tttgttttgtttt-g
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60669928 18 +  64156825 tggttctgttttgttttg-
i rheMac3.chr19                 C 0 I 670
s macFas5.chr19                  55811109 17 +  59248254 tggttctgttttgtttt--
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47917828 17 +  51301725 tggttctgttttgtttt--
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e ponAbe2.chr19                  56886375 3941 +  60714840 T
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621485 23 +  50890351 I

a score=27800.000000
s hg38.chr19_GL949751v2_alt        947638 38 +   1002683 agacggagtctcgctctgtcacccaggctggagtgcaa
s panTro4.chr19                  59940774 38 +  63644993 agacggagtctcgctctgtcgcccaggctggagtgcaa
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103366683 38 - 106955855 agatggagtctcgctctgtcggccaggctggagtgcaa
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811126 31 +  59248254 -------gtttcgctctgtcgcccaggctggggtgcaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47917845 31 +  51301725 -------gtttcgctctgtcgcccaggctggagtgcaa
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e ponAbe2.chr19                  56886375 3941 +  60714840 T
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621485 23 +  50890351 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=168.000000
s hg38.chr19_GL949751v2_alt        947676 7 +   1002683 tggcata
s panTro4.chr19                  59940812 4 +  63644993 t---ata
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103366721 7 - 106955855 tggcaca
i nomLeu3.chr10                 C 0 I 267
e canFam3.chr1                   20086848 689 - 122678785 I
e ponAbe2.chr19                  56886375 3941 +  60714840 T
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621485 23 +  50890351 I
e papAnu2.chr19                  47917876 0 +  51301725 C
e macFas5.chr19                  55811157 0 +  59248254 C
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=162.000000
s hg38.chr19_GL949751v2_alt        947683 70 +   1002683 tatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttt
s panTro4.chr19                  59940816 22 +  63644993 tatatatatatatatatatata------------------------------------------------
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e ponAbe2.chr19                  56886375 3941 +  60714840 T
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e nomLeu3.chr10                 103366728 267 - 106955855 I
e chlSab2.chr6                   47621485 23 +  50890351 I
e papAnu2.chr19                  47917876  0 +  51301725 C
e macFas5.chr19                  55811157  0 +  59248254 C
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=182.000000
s hg38.chr19_GL949751v2_alt        947753 2 +   1002683 tt
s nomLeu3.chr10                 103366995 2 - 106955855 tt
i nomLeu3.chr10                 I 267 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e ponAbe2.chr19                  56886375 3941 +  60714840 T
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621485 23 +  50890351 I
e papAnu2.chr19                  47917876 0 +  51301725 C
e macFas5.chr19                  55811157 0 +  59248254 C
e rheMac3.chr19                  60669946 670 +  64156825 I
e panTro4.chr19                  59940838 0 +  63644993 C

a score=13821.000000
s hg38.chr19_GL949751v2_alt        947755 32 +   1002683 ttttttttttttttttgggaaacagaatctca
s panTro4.chr19                  59940838 29 +  63644993 ---tttttttttttttgggaaacagagtctca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56882434 32 +  60714840 ttttttgttttttttttggagacagagtctca
i ponAbe2.chr19                 T 3941 C 0
s nomLeu3.chr10                 103366997 32 - 106955855 tttttttttttttttttggagacagagtctaa
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621485 23 +  50890351 I
e papAnu2.chr19                  47917876  0 +  51301725 C
e macFas5.chr19                  55811157  0 +  59248254 C
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=22690.000000
s hg38.chr19_GL949751v2_alt        947787 25 +   1002683 ctctgttgcccaggctggagtgcag
s panTro4.chr19                  59940867 25 +  63644993 ctctgttgcccaggctggagtgcag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56882466 25 +  60714840 ctctgttgcccaggctggagtgcag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367029 25 - 106955855 ctctgttgcccaggctggagtgcag
i nomLeu3.chr10                 C 0 C 0
s chlSab2.chr6                   47621508 25 +  50890351 ctctgtcgcccaggctggggtgcaa
i chlSab2.chr6                  I 23 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e papAnu2.chr19                  47917876  0 +  51301725 C
e macFas5.chr19                  55811157  0 +  59248254 C
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=186777.000000
s hg38.chr19_GL949751v2_alt        947812 119 +   1002683 tggcatgatcccagctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcatgcaccaccatgcccagttaa-ttttgtatg
s panTro4.chr19                  59940892 119 +  63644993 tggcgtgatcccagctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcatgcaccaccatgcccagttaa-ttttgtatG
i panTro4.chr19                 C 0 M 469
s ponAbe2.chr19                  56882491 119 +  60714840 tggcgtgatcccagctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcatgtgccaccatgcccagttaa-ttttgtatg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367054 119 - 106955855 tggcgtgatcccagctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcatgcgccaccatgccccgttaa-ttttgtatg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811157 118 +  59248254 tggcatgatctcggctcactgcaatctccgcctcccaggttgaagccattcttctgcctcagcctagagagtagctgggattacaggcactcgccatcatgcccagctaatttttgta--
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47917876 118 +  51301725 tggcatgatctcggctcactgcaacctccgcctcccaggttgaagcaattcttctgcctcagcctagagagcagctgggattacaggcactcgccatcatgcccagctaatttttgta--
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47621533 118 +  50890351 tggcatgatctcggctcactgcaatctccgcctcccaggttgaagcaattcttctgcctcagcctagagagtagctgggattacaggcactcgccatcatgccgggctaatttttgta--
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=126884.000000
s hg38.chr19_GL949751v2_alt        947931 113 +   1002683 tttagtagagacagggtttcaccatgttagccaggctgatctcgaactcctgacctcaggtgatccgtccacctcggcctcccaaagtgctggcattacaggcgtgagccacc
s ponAbe2.chr19                  56882610 113 +  60714840 tttagtagagacagggtttcaccacgttggccgggctgatctcgaactcccgacctcaggtgatccgcccacctcggcctcccaaagtgctggcattacaggcgtgagccacc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367173 110 - 106955855 tttagtagagacagggtttcaccatgttagccaggctgatctcgaactcctgacctcaggtgatccgctcacctcggcctccca---tgctgggattacaggcgtgagccacc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811275 107 +  59248254 ttttgtaga------gtttcaccatgttggccagtctggtcttgaacctctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcatgaaccacc
i macFas5.chr19                 C 0 I 49
s papAnu2.chr19                  47917994 107 +  51301725 ttttgtaga------gtttcaccatgttggccagtctggtcttgaacctctgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcatgaaccacc
i papAnu2.chr19                 C 0 I 33
s chlSab2.chr6                   47621651 107 +  50890351 ttttgtaga------gtttcaccatgttggccagtctggtcttgaacctctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccacc
i chlSab2.chr6                  C 0 I 44
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e rheMac3.chr19                  60669946 670 +  64156825 I
e panTro4.chr19                  59941011 469 +  63644993 M

a score=2560.000000
s hg38.chr19_GL949751v2_alt        948044 10 +   1002683 gtgcccgacc
s ponAbe2.chr19                  56882723 10 +  60714840 gcgcctggcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367283 10 - 106955855 gcgcccggcc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811431 10 +  59248254 aaaTCCCATC
i macFas5.chr19                 I 49 C 0
s papAnu2.chr19                  47918134 10 +  51301725 aaatcccatc
i papAnu2.chr19                 I 33 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47621758 44 +  50890351 I
e rheMac3.chr19                  60669946 670 +  64156825 I
e panTro4.chr19                  59941011 469 +  63644993 M

a score=55725.000000
s hg38.chr19_GL949751v2_alt        948054 45 +   1002683 AGGAATTAAAAATAGACAACCACCACCAAGAT--AAAAAAAGGTATA
s ponAbe2.chr19                  56882733 45 +  60714840 AGGAATTAAAAATAGACAACCACCACCAAGAT--AAATAAAGGTATA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367293 45 - 106955855 AGGAATTAGAAATAGACAACCACCACCAAGAT--AAATAAAGGTATA
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811441 47 +  59248254 AGGAATTAAAAATAGACAACCATCACCAAGGTAAAAATAAAGGTATA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47918144 47 +  51301725 agGAATTAAAAATAGACAACCATCACCAAGGTAAAAATAAAGGTATA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47621802 45 +  50890351 AGGAATTAAAAATAGACAACCATCACCAAGGT--AAATAAAGGTATA
i chlSab2.chr6                  I 44 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e rheMac3.chr19                  60669946 670 +  64156825 I
e panTro4.chr19                  59941011 469 +  63644993 M

a score=410147.000000
s hg38.chr19_GL949751v2_alt        948099 280 +   1002683 CTTCACATACCAGATAgtgaggagggccactttgactagggtggtgggggatatacttagcgagaagagagtatttgagtctgaccctgaaagaagtaatgaggcagccaggctggtccattctagtagcagagaggaggccagtgatgctgtggaggggagtgaggcagggaagaggggagggagGCAGGATTTATAACGCGGAATAGA-CCACAGTGCAGCTggccaggaattagggtggcgtgagtgaggcactctcctgggatgtaaaatttaaTTA
s panTro4.chr19                  59941489 271 +  63644993 CTTCACATACCAGATAGTG-GGAGG-CCACTT-GACTAGG-TGGTGGGG-ATATACTTAGTGAGA-GAGAGCATTTGAGTCTGACCC-GAAAGAAGTA-TGAGGCAGCCAGGCTGGTCCACTCTAGTAGCAGAGAGGAGGCCGGTGATGCTGTGGAGGGGAGTGAGGCAGGGAAGAGGGGAGGGAGGCAGTATT-ACAACGCGGAATAGA-CCACAGTGCAGCTggccaggaattagggtggcgtgagtgaggcactctcctgggatgtaaaacttaaTTA
i panTro4.chr19                 M 469 C 0
s ponAbe2.chr19                  56882778 260 +  60714840 CTTCACATACCAGATAgtgaggagggccactttgactagggtggtgggggatatacttagtgagaagagagcatttgagtctgaccccaaaagaagtaatgaggcagccaggcTGGCCCATTCTAGTAGCAGAGAGGAGGCCGGTGATGCTGTGGAGGGGAGAGAGGCAGG--------------------ATTTACAATGCGGAATAGA-ACACAGTGCAGCTggccaggaattagggtggcgtgagtgaggcactctcctgggatgtaaaatttaaTTA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367338 281 - 106955855 CTTCACATACCAGATAgtgaggagggccactttgactagggtggtgggggatatacttagtgagaagacagcatttgggtctgaccccgaaagaagtaatgaggcagccaggcTGGTCCATTCTAGTAGCAGAGAGGAGGCGGGTGATGCTGTggaggagagtgaggcagggaagaggggagggaggcaggATTTACAACGCGGAATAGACCCACAGTGCAGCTggccaggaattagggtagcgtgagtgaggcactctcctgggatgtaaaatttaaTTA
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811488 257 +  59248254 CTTGACATACCAGATAGTGAGGAGGACCATTTTGACTAGGGTGGTGGGGTAAATACTTAATAAGAAGATGGCATTTGAGTCTGACCCCAAAAGAAGTAATGAGGCGGCCAGGCTGGTCCATCCTAGCAGCAGAGAG-----------------------GAGTGAGGGAGGAAAGAGGGGAGGTAGGCAGAATTTACAACGCGGAATAGA-CCACAGTGCAGCgggccgggaattagggtggcatgagtgaggcactctcctgggatgtaaaatgtaaTTA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47918191 257 +  51301725 CTTGACATACCAGATAGTGAGGAGGACCATTTTGACTAGGGTGGTGGGGTAAATACTTAATAAGAAGATGGCATTTGAGTCTGACCCCAAAAGAAGTAATGAGGCGGCCAGGCTGGTCCATCCTAGCAGCAGAGAG-----------------------GagtgagggaggaaagaggggaggTAGGCAGAATTTACAACGCGGAATAGA-CCACAGTGCAGCGGGCCAGGAATTAGGCTGGCATGAGTGAGGCACTCTCCTGGGatgtaaaatgtaatta
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47621847 257 +  50890351 CTTGACATACAAGATAgtgaggagggccattttgactagggtgatggggtaaatacttaataagaagatggcatttgagtctgactccaaaagaagtaatgaagcggccaggcTGGTCCATCCTAGCAGCAGAGAG-----------------------GAGTGAGGGAGGAAAGAGGGGAGGTAGGCAGAGTTTACAACGCAGAAGAGA-CCACAGTGCAGCgggccaggaattagggtggcatgagtgaggcactctcctgggatgtaaaatgtaaTTA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20086848 689 - 122678785 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=168891.000000
s hg38.chr19_GL949751v2_alt        948379 101 +   1002683 TTCCCAAACAATTAACATATTTGAAAAAATTATTGAAAATTTGAAGAGTAGGTCGTTAAAACTCAC--ATTATTCT--GTTTGAA-----TACTTTATTCCCCT--------GAAAGA----------------
s panTro4.chr19                  59941760 101 +  63644993 TTCCCAAACAATTAACATATTTGAAAAAATTATTGAAAATTTGACGAGTAGGTCGTTAAAACTCAC--ATTATTCT--GTTTGAA-----TACTTTATTCCCCT--------GGAAGA----------------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56883038 105 +  60714840 TTCCCAAAC----AACATATTTGAAAAAATTATTGAAAATTTGAAGAGTAGATCATTAAAACTCAC--ATTATTCT--GTTTGAA-----TACTTTATTTCTTCCCCCGAAAGAAAGA----------------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367619 105 - 106955855 TTCCCAAACAATTAACATATTTGAAAAAATTATTGAAAATTTGAAGAGTAGGTCATTAAAACTCAC--ATTATTCT--GTTTCAA-----TACTTTATTTATTCGCCT----GAAAGA----------------
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811745 100 +  59248254 TTCCCAAACAATTAACATATTTGAAAAAATGTTTGCAAATTTGAAGAGTAGGTCATTAAAACTCAC--ATTATTCT--ATTTGAA-----TAC-TTATTCCCGT--------GAAAGA----------------
i macFas5.chr19                 C 0 I 4
s papAnu2.chr19                  47918448 100 +  51301725 ttcCCAAACAattaacatatttgaaaaaatgtttgcaaatttgAAGAGTAGGTCATTAAAACTCAC--ATTATTCT--ATTTGAA-----TAC-TTATTCCCgt--------gaaaga----------------
i papAnu2.chr19                 C 0 I 4
s chlSab2.chr6                   47622104 105 +  50890351 TTCCCAAACAATTAACATATTTGAAAAAATGTTTGAAAATTTGAAGAGTAGGTCATTAAAACTCAC--ATTATTCT--ATTTGAATACTTTAC-TTATTCCCCT--------GAAAGA----------------
i chlSab2.chr6                  C 0 I 446
s canFam3.chr1                   20087537 115 - 122678785 TTTCCAGGCTATTAAC--AGTTGAAAAAA---TTGAAAAACTTTAAAGTAGGCTATTAAAACTCACaaattattttaagtttaaa-----tat-ttatttatac--------aaaaaaaatactttttaaagaa
i canFam3.chr1                  I 689 C 0
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=20163.000000
s hg38.chr19_GL949751v2_alt        948480 14 +   1002683 TTTATTAGAATTTT
s panTro4.chr19                  59941861 14 +  63644993 TTTATTAGAATTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56883143 14 +  60714840 TTTATCATGATTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103367724 14 - 106955855 TTTATTAGGATTTT
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55811849 14 +  59248254 TTTATTATGAtttt
i macFas5.chr19                 I 4 I 155
s papAnu2.chr19                  47918552 14 +  51301725 tttattatgatttt
i papAnu2.chr19                 I 4 I 1288
s canFam3.chr1                   20087652 14 - 122678785 tttattatCCTTTT
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47622209 446 +  50890351 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=15046.000000
s hg38.chr19_GL949751v2_alt        948494 27 +   1002683 -ACATTCTAGGCTTTTGTGGATGCAAGC
s panTro4.chr19                  59941875 27 +  63644993 -ACATTTTAGGCTTTTGTGGATGCAAGC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56883157 27 +  60714840 -ACATTCTAGGCTTTTGTGGTTGCAAGC
i ponAbe2.chr19                 C 0 I 7304
s nomLeu3.chr10                 103367738 27 - 106955855 -ACATTCTAGGCTTTTGTGGATGCAAGC
i nomLeu3.chr10                 C 0 C 0
s canFam3.chr1                   20087666 27 - 122678785 AATTCTCCTGACTTTAG-GGAAACAAAT
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47622209 446 +  50890351 I
e papAnu2.chr19                  47918566 1288 +  51301725 I
e macFas5.chr19                  55811863 155 +  59248254 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=24636.000000
s hg38.chr19_GL949751v2_alt        948521 65 +   1002683 GCATCAGTGCTATTTCCAAAACCTACTTCTAGAAAA----TAACCATTTAAAAGTGCACTA-------ACTGGgtg
s panTro4.chr19                  59941902 65 +  63644993 GCATCAGTGATATTTCCAAAACCTACTTTTAGAAAA----TAACCATTTAAAAGTGCACTA-------ACTGGgtg
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103367765 69 - 106955855 CCATCAGTGATAGTTCCAAAACCTACTTCTAGAAAATAATTAACCATTTAAAAGTGCACTA-------ACTGGgtg
i nomLeu3.chr10                 C 0 C 0
s canFam3.chr1                   20087693 70 - 122678785 TCATCAATGATATTTTCAAAATCTG--TTCAGAAAA----TTACCATTTAAAAATGCTTTAGAgggacactgggtg
i canFam3.chr1                  C 0 I 698
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47622209 446 +  50890351 I
e papAnu2.chr19                  47918566 1288 +  51301725 I
e macFas5.chr19                  55811863 155 +  59248254 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=156861.000000
s hg38.chr19_GL949751v2_alt        948586 622 +   1002683 cacctatagtcccagctactagggaggaccacttgagcccagggatttgaggctaaagtgagctatgatcatgcctgtgaatacagcgagtgtactaaagcctgggcaacatagtaagacctcttctctt----------tttttttttttcccaagacggagtcttgctctgtcgcccaggctggactgcagtggtgcaatctcggctcaccgcctcccaggtttaagcgattctcctgcctcagcctccggagtagctgggattacaggagtgcgccaccgcgcccagctaattattattatt--------ttttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttaagtgatccacccacctcagcctcccaaagtactgggattacaggcgtgagccgccgcgcccggcccaacctcttctcttaaaaaaaataaataa----------ataagaaaagaAATTAGAATATTTGCACCAATCaagagtctaaggagacataaatactaaatgcactgtggggccctggacggggtctgggaacagaaataggatattagtggaaagactggtgaaattcaaatagcctggagtttacttgatataatatagttgtgtctat
s panTro4.chr19                  59941967 635 +  63644993 cacctatagtcccagctactagggaggaccacttgagcccagggggttgaggctaaagtgagctatgatcatgcctgtgaatatagcgagtgtactaaagcctgggcaacatagtaagacctcttctcttctc-----ttttttttttttttccaagacggagtcttgctctgtcgcccaggctggactgcagtggtgcaatctcggctcactgcctcccaggtttaagcgattctcctgcctcagcctccggagtagctgggattacaggagtgcgccaccgcgcccagctaattattattattatttttttttttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccttaagtgatccacccacctcagcctcccaaattactgggattacaggcatgagccgccgtgcccggcccaacctcttctcttaaaaaaaataaataa----------ataagaaaagaaaTTAGAATATTTGCACCAATCaagagtctaaggagacataaatactaaatgcactgtggggccctggacggggtctgggaacagaaataggatattagtggaaagactggtgaaattcaaatagcctggagtttacttgatataacatagttgtgtctat
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103367834 628 - 106955855 cacctgtagtcccagctactagggaggaccacttaagcccaggggtttgaggctaaagtgagctatgatcgtgcctgtgaatgt--------------agcctgggcaacatagtaagacctcttctcttctcttttttttttttttttttcccaagacggagtcttgctctgtcgcccaggctggagtgcagtggtgcagtctcggctcactgtctcccaggtttaagcgattctcctgcctcagcctccggagtagctgggattacagacgtgcgccaccgtgcccagctaattatttttatt-------ttttttaagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgaccttaagtgatccacccgcctcggcctcccaaagtactgggattacaggcgtgagccactgcgcctggcccaacctcttctctaaaaaaaaaaaaaaaaaaaaagaaagaaaagaaaagatattagaatattcgcaccaatcaagagtctaaggagacataaatactgaatgcactgt-gggccctggacggggtctgggaacagaaataggatattagtggaaagactggtgaaattcaaatagcctggagtttacttgatataacatagttgtatctat
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20087763 698 - 122678785 I
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47622209 446 +  50890351 I
e papAnu2.chr19                  47918566 1288 +  51301725 I
e macFas5.chr19                  55811863 155 +  59248254 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=73429.000000
s hg38.chr19_GL949751v2_alt        949208 244 +   1002683 ggttagttt----tttgtttgtttt--ttgatacagggtctcactctgtcacccaggctggagtgcagtggcgtgatcacagctccctgcagcctcggcctccctggctcaagcgatcctcctgcctcagcctcctgagtagctgggactataggtgtatgccaccatgccccactaatttttaatttt----------gtttaaagat--gaggtctcactatgttgcccaggctg-------------------------------gtcttgaactcctgagctcaagcaa
s panTro4.chr19                  59942602 244 +  63644993 ggttagttt----tttgtttgtttt--ttgatacagggtctcactctgtcacccaggctggagtgcagtggcatgatcacagctccctgcagcctcggcctccctggctcaagtgatcctcctgcctcagcctcctgagtagctgggactataggcgtatgccaccatgccccactaatttttaatttt----------gtttaaagat--gaggtctcactatgttgcccaggctg-------------------------------gtcttgaactcctgagctcaagcaa
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103368462 233 - 106955855 ggttagttttttgtttgtttgtttt--ttgatacagggtctcactctgtcacc--------------gaggcatgatcacagttccctgcagcctcggcctccctggctcaagcgatcctcctgcctcagcctcctgagtagctgggactataggtgtatgccaccatgccccactaatttttaatttt-----------tttgaagat--gaggtctcactatgttgcccaggctg-------------------------------gtcttgaactccggagctcaagcaa
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55812018 256 +  59248254 ggctaattt----ttttgtatttttagtagagacagggtttcactgtgttagccaggatg-------------------------------gtctccatctcttggcctt--gtgatccgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgtctggccTATGGTTAGttttttgtttgtttgtttgttgatacaggatcttactctgtcacccaagctggagtgcagaggcacgatcacagctctctgtagcctcagcctccctggctcaagtgg
i macFas5.chr19                 I 155 C 0
e canFam3.chr1                   20087763 698 - 122678785 I
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e chlSab2.chr6                   47622209 446 +  50890351 I
e papAnu2.chr19                  47918566 1288 +  51301725 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=21961.000000
s hg38.chr19_GL949751v2_alt        949452 24 +   1002683 tcctcccgcctcagcctcccaaag
s panTro4.chr19                  59942846 24 +  63644993 tcctcccgcctcagcctcccaaag
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103368695 24 - 106955855 tcctcccacctcagcctcccaaag
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55812274 24 +  59248254 tcctcctgcctcagcctcccaaag
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47622655 24 +  50890351 tcctcctgcctcagcctcccaaag
i chlSab2.chr6                  I 446 C 0
e canFam3.chr1                   20087763 698 - 122678785 I
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e papAnu2.chr19                  47918566 1288 +  51301725 I
e rheMac3.chr19                  60669946 670 +  64156825 I

a score=418039.000000
s hg38.chr19_GL949751v2_alt        949476 327 +   1002683 tgctgggattacaggtgtaaaccactgggaccagtgctacgtttattttttggttgtaacaaatgtaagatgttaacatgaggggatcctgggtgaaatatttccattaatattatctttggaacttttctgtcagtctaaaaattactccaaaacaaagtt-----ttaaaaaGAATCCCGAgccaagcacggtggcccgtgaccgtagtccctgctactcatgaggctgaggcaggaggattgctcaaggcaaggagctccaggctgcagtgagctatgactgct----------cctatgaacagccactgcactccggcctgggcagtgtagcaagac
s panTro4.chr19                  59942870 327 +  63644993 tgctgggattacaggtgtaaaccactgggaccagtgctacgtttattttttggttgtaacaaatgtaagatgttaacatgaggggatcctgggtgaaatatttccattaatattatctttggaacttttctgtcagtctaaaaattattccaaaacaaagtt-----ttaaaaaGAATCCCGAgccaagcatggtggcctgtgactgtagtccctgctactcatgaggctgaggcaggaggattgcttaaggcaaggagctccaggctgcagtgagctatgactgct----------ccagtgaacagccactgcactgcagcctgggcagcgtagcaagat
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103368719 327 - 106955855 tgctgggattacaggtgtaaaccactgggaccagtgctatgtttattttttagttgtaacaaatgtaagacgttaacatgaggggatcccgggtgaaatatttccattaatattatctttgcaacttttctgtcagtctaaaaattattccaaaacaCACTT-----TTAAAAAGAATCCCGAgccaagcatggtggcctgtgactgtagtccctgctactcgtgaggctgaggcaggaggattgctgaaggcaaggagctccaggttgcagtgagctatgattgct----------cctgtgaacagccactgcactccagcctgggcaatgtagcaagac
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60670616 342 +  64156825 tgctgggattacaggtgtgagccacTGGGACCAGTGCTGtgtttattttttagttgtaacaaatgtaagatgttaacatgaggggatcctgggtgaaatattttcattaatattatctttgcaacttttctgtcagtctaaaaatgattccaaaaccaagtttttaattaaaaaGAATCCTGAgccaagcatggtggcctgtgactgtagtccctgctactcatgaggctgaggcaggaggattgcttaaggcaaggagttccaggctgccgtgagctatgattgctctgcagtgagctggtgaacagccactgcgctccagcctggaccacatagcaagag
i rheMac3.chr19                 I 670 C 0
s macFas5.chr19                  55812298 332 +  59248254 tgctgggattacaggtgtgagccacTGGGACCAGTGCTatgtttattttttagttgtaacaaatgtaagatgttaacatgaggggatcctgggtgaaatattttcattaatattatctttgcaacttttctgtcagtctaaaaatgattccaaaaccaagtttttaattaaaaaGAATCCTGAgccaagcatggtggcctgtgactgtagtccctgctactcatgaggctgaggcaggaggattgcttaaggcaaggagttccaggctgccgtgagctatgattgct----------cctgtgaacagccactgcactccagcctggaccacatagcaagag
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47622679 332 +  50890351 tgctgggattacaggtgtgagccacTGGGACCAGTGCTatgtttattttttagttgtaacaaatgtaagatgttaacatgaggggatcctgggtgaaacattttcattaatattatctttgcaacttttctgtcagtctaaaaatgattccaaaaccaagtttttaattaaaaaGAATCCTGAgccaagcatggtggcctgtgactgtagtccctgctactcatgaggctgaggcaggaggattggttaaggcaaggagttccaggctgccgtgagctatgattgct----------cctgtgaacagccactgcactccagcctgggccacatagcaagag
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20087763 698 - 122678785 I
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I
e papAnu2.chr19                  47918566 1288 +  51301725 I

a score=1004241.000000
s hg38.chr19_GL949751v2_alt        949803 620 +   1002683 cccatcgctAATTTTTTTAAGTGCATTAAAACACAGATAAAGGGTTGCCTGtttttcgttttggcacagactctggtatgacttgacacaggcactggctgattctgcctttatttgaaattctgg-ttttttt--cattgtggatgtttttgcaatttattttgatttttttaaaaattgcatgaaaatgttattcacagccagatgcagtggctcacgcctgaaatcccaacactttgggaagccaaggtggaaggatagcttgagcccacaggagttcgagaccagcctgagcaacatagcgagaccctatctctctctcttttgtattttaatgccttttgtgaaaactgtcaagagaccccatctctat-aaaaacataaaaaatgagctgggcgtggtggtgcacacctgtaatcctagctacttggagggctgaggcgggagaatcgcttgagccctgg---aggtggaggctgcagtgagccaagatcgcgccactgctctccaccctgggtgacgcagcaagaccctgtgtccaaaaaac-----aaaatattattcacattgatccataaatgtcgtggcaccaccacccgctaggccagtgcctcgtttgcctc------------accctaa
s panTro4.chr19                  59943197 619 +  63644993 cccatcGCTAATTTTTTTAAGTGCATTAAAACA--GATAAAGGGGCGCCTGtttttcgttttggcacagactctggtatgacttggcacagacactggctgattctgcctttatttgaaattctgg-ttttttt-tcatcgtggatgtttttgcactttattttgattttttttaaaattgcatgaaaatgttattcacagccagatgcagtggctcacgcctgtaatcccaacactttcggaagccaaggtggaaggattgcttgagcccacaggagttcgagaccagcctgagcaacatagcgagaccctatctctctgtcttttgtattttaatgccttttgtgaaaactgtcaagagaccccatctctgt-aaaaacataaaaaatgagctgggcgtggtggtgcacacctgtaatcccagctacttggagggccgaggcaggagaatcgcttgagccctgg---aggtggaggctgcagtgagccaagatcgcgccactgcactccaccctgggtgacgcagcaagaccctgtgtccaaaaaat-----aaaatattattcacattgatccataaatgtcgtggcaccaccacccgctaggccagtgcctcgtttgcctc------------accctaa
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103369046 607 - 106955855 cccatctctaaTTTTTTTAAGTGTGTTAAAACACAGATAAAGGGGTGCCTGtttttcgttttggcacagcttctggtatgacttggcacaggcactggctgattctgcctttatttgaaattctga-ttttttt-ttatcgtggatgtttttgcaatttatt----ttttttt---aattgcattaaaatgttattcacagacagatgcagtggctcacgcctgttatcccaacactttgggaggccaaggtggaaggattgcttgagcc--caggagttcgagaccagcctgagcaacacagcgagaccc--tctctctctcttttgtattttaatgccttttgtgaaaactgtcaggagaccccacctctac-aaaaacataaaaagtgagctgggcatggtggtgcacacctgtagtcccagctacttggagggctgaggcaggagaatcgcttgagcctggg---aggcggaggctgcagtgagccaagatcgcgccactgcactccaccctgggtgatgcagcaagaccctgtgtccaaaaaat-----aaaatattattcacattgatccataaat---gtggcaccaccacccgctaggccagtgcctcgtttgcctc------------accctaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60670958 611 +  64156825 cccatctctAATTTTTTTAAGTGCATTAAAACACAGATAAAGGAGTGCCTGTCTTTCGTT----------------------ttggcacaggcactgcctgattctgcctttatgtgaaattctga-tttttttttcatcgtggatg-gtttgcgatttcttttgattttttaaaaaattgcattaaaatgttattctcacccagatgcagtggctcaggcctgtaaacccaacactttgggaggccaaagtggaaggattgcttgagcc--caggagtttgagaccagtctaagcaacatagcgagaccc--tctctctctcttt--tattttaatgccttttgtgaaaactgtcaagagaccccatctccacaaaaaaaattaaaaatgagctgggcatggtggtgcacacctgtagtcccagctactcggagggctgaggcaggagaatcacttgaacttagg---aggtggaggctgcagtgagccaagatcgcaccaccgcactccagcgtgggtgacgcagcaaggccctgtgtccaaaaaacaaaacaaaatgttattcacattgatccataaatgttgtggcaccaccacccgctaggccagtgcctggtttgcctcgccctaattccggccctAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55812630 611 +  59248254 cccatctctAATTTTTTTAAGTGCATTAAAACACAGATAAAGGAGTGCCTGTCTTTCGTT----------------------ttggcacaggcactgcctgattctgcctttatgtgaaattctga-tttttttttcatcgtggatg-gtttgcgatttcttttgattttttaaaaaattgcattaaaatgttattcacacccagatgcagtggctcaggcctgtaaacccaacactttgggaggccaaagtggaaggattgcttgagcc--caggagtttgagaccagtctaagcaacatagcgagaccc--tctctctctcttt--tattttaatgccttttgtgaaaactgtcaagagaccccatctccacaaaaaaaattaaaaatgagctgggcatggtggtgcacacctgtagtcccagctactcggagggctgaggcaggagaatcacttgaacttagg---aggtggaggctgcagtgagccaagatcgcaccaccgcactccagcgtgggtgacgcagcaaggccctgtgtccaaaaaacaaaacaaaatattattcacattgatccataaatgttgtggcaccaccacccgctaggccagtgcctggtttgcctcgccctaattccggccctAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47919854 612 +  51301725 cccgtctctaatttttttaagtgcattAAAACACAGATAAAGGAGTGCCTGTCTTTCGTT----------------------TTGGCACAGGCACTGCCTGATTCTGCCTTTATgtgaaattctgattttttttttcatcatggaTG-GTTTGcgatttcttttgattttttaaaaaattgcattaaaatgttattcacacccagatgcagtggctcaggcctgtaatcccaacactttgggaggccaaagtggaaggattgcttgagcc--caggagtttgagaccagtctaatcaacatagcaagaccc--tctctctctcttt--tattttaatgccTTTTGTGAAAACTGTcaagagaccccatctccacaaaaaaaattaaaaatgagctgggcatggtggtgcacacctgtagtcccagctactcggagggctgaggcaggagaatcacttgaacttagg---aggtggaggctgcagtgagccaagatcgcaccaccgcactccagcgtgggtgacgcAGCAAGGCCCTgtgtccaaaaaacaaaacaaaatattattcacaTTGATCCATAAATGTTGTGGCACCACCACCCGCTAGGCCAGTGCCTGGTTTGCCTTGCCCTAATTCTGGCCCTAA
i papAnu2.chr19                 I 1288 C 0
s chlSab2.chr6                   47623011 632 +  50890351 cccatctctAATTTTTTTAAGTGCATTAAAACACAGATAAAGGGGTGCCTGtttttcgttttagcacaggctctggtatgacttggcacaggcactgcctgattctgcctttatttgaaattctga-tttttttttcatcgtggatg-gtttgccatttattttgattttttttaaaattgcattaaaatgttattcacacccagatgcagtggctcaggcctgtaatcccaacactttgggaggccaaagtgggaggattgcttgagcc--caggagtttgag---agcctaagcaacatagcgagaccc--tctctctctcttt--tattttaatgccttttgtgaaaactgtcaagagaccccatctccacaaaaaaaattaaaaatgagctgggcatggtggtgcacacctgtagtcccagctacttggagggctgaggcaggagaatcacttgaacttaggataaggtggaggctgcagtgagccaagatcgcaccaccgcactccagcgtgggtgacgcagcaaggccctgtgtccaaaaaat-atataaaatattattcacattgatccataaatgttgtggcaccaccacccgctaggccagtgcctggtttgcctcgtcctaattccggccctAA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20087763 698 - 122678785 I
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I

a score=16400.000000
s hg38.chr19_GL949751v2_alt        950423 8 +   1002683 tccctgcc
s panTro4.chr19                  59943816 8 +  63644993 cccctgcc
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103369653 8 - 106955855 tccctgcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60671569 8 +  64156825 TCCCTGCT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55813241 8 +  59248254 TCCCTGCT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47920466 8 +  51301725 TCCCTGCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47623643 8 +  50890351 TCCCTGCT
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20088461 8 - 122678785 TCGCTGTC
i canFam3.chr1                  I 698 C 0
e ponAbe2.chr19                  56883184 7304 +  60714840 I
e calJac3.chr22_GL285922_random     36981 3745 +    138250 I

a score=755687.000000
s hg38.chr19_GL949751v2_alt        950431 264 +   1002683 ctCAATGTCCCCCGTATTTGTGTCCTGAA---CGGAGGAC-CACGCAGTCCCAGGCTCCGATCCCCCTTCCTTTACCCGTGGCAACGAGCTCCAGCTGGTCGCTGGGCAGGGACCAGAGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCAGCCAGACTTCTCTTCATGGCCGGGATGAAGAGGACTGCCTGATCCTGGTACCTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGTCCCTGGCACCGGAGGG
s panTro4.chr19                  59943824 264 +  63644993 ctCAATGTCCCCCATATTTGTGTCCTGAA---TGGAGGAC-CGCGCAGTCCCAGGCTCCGATCCCCCTTCCTTTACCGGTGGCAATGAGCTCCAGCTGGTCGCTGGGCAGGGACCAGAGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCAGCCAGACTTCTCTTCATGGCCGGGATGAAGAGGACTGCCTGATCCTGGTACCTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGTCCCTGGCACCGGAGGG
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103369661 264 - 106955855 ctCAATGTCCCCCGTATTTGTGTCCTGAA---TGGAGGAC-CACGCAGTCCCAGGCTCTGATCCCCCTTCCTTTACCGGTGGCAACGAGCTCCAGCTGGTCGCTGGGCAGGGACCAGAGGCTTCTGTTCTGGTAGGAGCAGCGGTAGCGTCCAGCCAGATGTGTCTTCATGGCCGGGATGAAGAGGACCGCCTGATCCTGGTAGCTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGTCCCTGGCACCGGAGGG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60671577 264 +  64156825 CTCAGTGTCCCCCATGTTTGTGCCCTGAA---CGGAGGAC-CAGGCAGTCCCAGGCTCCGATCCCCCTTCCTTTACCGGTGGCAACGAGCTCCAGCTGGTCGCTGGGCGGGGACCAGAGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCGGCCAGATGTCTCTTCATGGCCGGGATGAAGAGGACCGCCTGATCCTGGTACCTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGCCCCTGGCACCGGAGGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55813249 264 +  59248254 CTCAGTGTCCCCCATGTTTGTGCCCTGAA---CGGAGGAC-CAGGCAGTCCCAGGCTCCGATCCCCCTTCCTTTACCGGTGGCAACGAGCTCCAGCTGGTCGCTGGGCGGGGACCAGAGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCGGCCAGATGTCTCTTCATGGCCGGGATGAAGAGGACCGCCTGATCCTGGTACCTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGCCCCTGGCACCGGAGGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47920474 264 +  51301725 CTCAGTGTCCCCCATGTTTGTGCCCTGAA---CGGAGGAC-CAGGCAGTCCCAGGCTCCGATCCCCCTTCCTTTACCGGTGGCAACGAGCTCCAGCTGGTCGCTGGGCGGGGACCAGAGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCGGCCAGACGTTTCTTCATGGCCGGGATGAAGAGCACCGCCTGATCCTGGTAACTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGTCCCTGGCACCGGAGGG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47623651 264 +  50890351 CTCAATGTCCCCCATATTTGTGCCCTGAA---CGGAGGAC-CAGGCAGTCCCAGGCTCCAATCCCCCTTCCTTTACCGGTGGCAACGAGCTCCAGCTGGTCGCTGGGCAGGGACCAGAGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCGGCCAGACTTCTCTTCATGGCCGGGATGAAGAGGACCGCCTGGTCCTGGTATCTGCTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACGCCCGGAGGCCCCTGGCACCGGAGGG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     40726 264 +    138250 ccTAACATCCCCCATATTCGTGTCCCGAA---CGGAGGCC-CATACAGTCCCAGGCTACAATCCCCTGTCCTTTACCAGTGGCAATGAGCTCCAGCTGGTCGCTGGGCGGGGACCAGCGGCTTCCGTTCTGGTAGGAGCAGCGGTAGCGTCCAGCGTCACTTTGCTTCATGGCCGGGATGAGGAGGACCGCCTGATCCCGGTAGCTGTTGGAACTCAGCTTCTCCAGGCGGTACAGGTCCACACCCGGAGGTCCCTGGCACCGGAGGG
i calJac3.chr22_GL285922_random I 3745 C 0
s canFam3.chr1                   20088469 265 - 122678785 ATCATCATCCCCCTCTTCACCCTCCTGGAGCCCTGAGGCCACAGGTGGCCCC---CTCCCATGCCCTTCCAGGTACCAGTGGCCACCAGCTCCAGCTGGTTGCTGGGGGGAGACCAGAGGGTCCCGTTCTGGTAGGAGCAGCGGTAACACCCAGCGAAACTTTCCTCCATGGTCTTGATGAAGAGGACAGGCCGATCCTGGTATTTCCGGGACCTCAGCTTCTCCAGGCGGTACAAGTCCACGTCTGGAGGCCCCTGGCAGCGGATGG
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56883184 7304 +  60714840 I

a score=1529597.000000
s hg38.chr19_GL949751v2_alt        950695 483 +   1002683 TCACTGGCTTCT-CCAGGGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTGGGGAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACC-CCGCCTGG--ACCCCGCTGCTCC--CGCGCTGGCGGATCCCG----------CAGGAGGGAAGGGGTCT-GGGGAAGGACTCACCACTCTGCGCTGG---CACACGCCCCAGACACAGCCCTGAGGAAAGAAGAAAGGGACCAGATGCCAGGACTCGCTTTTATGGACATTCCTGCCTGCTGGGCGCGGTGATAAGACATTTGCATGCATATGCTTTACTCTGTCCTAA----TAATTTCTTCAAAAGACACACAGGAATGTAATTtaagtg---agagaaaccggtcagaaaaagccacatagtttatgaggtcatttacatgaaatatccagaataggtaaatcta-taggagatggagaagaaagcagatccatggctg--------ggggtggt-gggagag-gagggc
s panTro4.chr19                  59944088 483 +  63644993 TCACTGGCTTCT-CCAGCGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTGGGGAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACC-CCGCCAGG--GCCCCGCTGCCCC--CGCGCTGGCGGATCCCG----------CAGGAGGGAAGGGGTCT-GGGGAAGGACTCACCACTCTGCGCTGG---CACACGCCCCAGACACAGCCCTGAGGAAAGAAGAAAGGGACCAGATGCCAGGACTCGCTTTTATGGACATTCCTGCCTGCTGGGCGCAGTGATAAGACATTTGCATGCATATGCTTTACTCTGTCCTAA----TTATTTCTTCAAAAGACACACAGGAATGTAATTtaagtg---agagaaaccggtcagaaaaagccacatagtttatgaggtcatttacatgaaatatccagaataggtaaatcta-taggagatggagaagaaagcagatccatggctg--------ggggtggt-gggagag-gagggc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56890488 482 +  60714840 TCACTGGCTTCTCCCAGGGGCACCA-GGAGCTGGGCAGAG-CTGGAGGGAGGGCTTGGGGAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACC-CCACCTGG--GCCCCGCTGCCCC--CGCGCTGGCGGATCCCG----------CAGGAGGGAAGGGGTCT-GGGGAAGGACTCACCACTTTGTGCTGG---CACATGCCCCAGACACAGCCCTGAGGAAAGAAGAAAGGGACCAGATGCCAGGACTCGCTTTTATGGACATTCGTGCCTGCTGGTCGTGGTGATAAGACATTTGCGTGCATATGCTTTACTCTGTCCTAA----TTATTTCTTCaaaagacacacaggaatgtaatttaagtg---agagaagccagtcagaaaaagccatgtagtttatgaggtcatttacatgaaatatccagaataggtaaatcta-taggagacggagaagaaaacagatccatggctg--------gcggtggt-gggagag-gagggt
i ponAbe2.chr19                 I 7304 C 0
s nomLeu3.chr10                 103369925 483 - 106955855 TCACTGGCTTCT-CCAGGGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTGGGGAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACC-CTGCCTGG--GCCCCACTGCCGC--CACGCTGGCGGATCCCT----------CAGGAGGGAAGGGGTCT-GGGGAAGGACTCACCACTCTGCGCTGG---CACACGCCCCAGACATAGCCCTGAGGAAAGAAGAAAGGGACCAGATGCCAGGACTCGCTTTTATGGACATTCCTGCCTACTGGACACGGTGATAAGACATTTGCATGCATGTGCTTTACTCTGTCCTAA----TTATTTCTTCaaaagacacacaggaatgtaatttaagtg---ggagaagccagtcagaaaaagccacatagtttatgaggtcatttacatgaaatatccagaataggtaaatcta-taggagacagagaagaaaacagatccatggctg--------ggggtggt-ggaagag-gagggc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60671841 490 +  64156825 TCACTGGCTTCT-CCAGGGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTAGGCAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACG-CCGCCTGG--GCCCCGCTGCCCTGGCACGCTGGCGGATCCCG----------CAGGAGGGAAGGGGTCTGGGGGAAGGACTCACCTCTCTGCGCTGG---CACATGCCCCAGACACAGCCCTGAGGAAAGAAGAAAGGGACCAGATGCCAGGACGCGCTCGTATGGACATTCCCGCCTGCTGGGCGCGGTGATAAGACATTTGCACGCATATGCTTTATTCTGTCCTAATTATTTATTTCTTCAGAAGATACATGTGCATGTAATTtaagtg---agagaagccagtcagaaaaagccacatagtctatgaggtcgtttacatgaaatatccagaataggtaaatcta-tagaaggaggagaagaaaacagatccacggctg--------ggggaggg-gggagag-gagggc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55813513 490 +  59248254 TCACTGGCTTCT-CCAGGGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTAGGCAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACG-CCGCCTGG--GCCCCGCTGCCCTGGCACGCTGGCGGATCCCG----------CAGGAGGGAAGGGGTCTGGGGGAAGGACTCACCTCTCTGCGCTGG---CACATGCCCCAGACACAGCCCTGAGGAAAGAAGAAAGGGACCAGATACCAGGACGCGCTCGTAGGGACATTCCCGCCTGCTGGGCGCGGTGATAAGACATTTGCACGCATATGCTTTATTCTGTCCTAATTATTTATTTCTTCAGAAGATACATGTGCATGTAATTtaagtg---agagaagccagtcagaaaaagccacatagtctatgaggtcgtttacatgaaatatccagaataggtaaatcta-tagaaggaggagaagaaaacagatccacggctg--------ggggaggg-gggagag-gagggc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47920738 490 +  51301725 TCACTGGCTTCT-CCAGGGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTAGGCAGTGGGCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACG-CCGCCTGG--GCCCCGCTGCCCTGGCACGCTGGCGGATCCCG----------CAGGAGGGAAGGGGTCTGGGGGAAGGACTCACCTCTCTGCGCTGG---CACATGCCCCAGACACAGCcctgaggaaagaagaaagggaccAGATGCCAGGACGCGCTTGTATGGACATTCCCGCCTGCTGGGCGCGGTGATAAGACATTTGCACGCATATGCTTTATTCTgtgctaattatttatttcttcaaaagatacatgtgcatgtaatttaagtg---agagaagccagtcaGAAAAAGCCACATAGCCTATGAGGTCGtttacatgaaatatccagaagAGGTAAATCTA-TAGAAGACGGAGAAGAAAACAGATccatggctg--------ggggtggg-gggagag-gaggGC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47623915 490 +  50890351 TCACTGGCTTCT-CCAGGGGCACCAGGGAGCTGGGCAGAGCCTGGAGGGAGGGCTTAGGCAGCGGTCCTGGAAGAGGAGCAGGGCTGGGTCAGCCTCCCCGCAGACG-CCGCCTGG--GCCCCGCTGCCCTGGCACGCTGGCGGATCCCG----------CAGGAGGGAAGGGGCCTGGGGGAAGGACTCACCTCTCTGCGCTGG---CACATGCCCCAGACACAGCCCTGAGGAAAGAAGAAAGGGACCAGATGCCAGGACGCGCTTTTATGGACATTCCCGCCTGCTGGGCGCGGTGATAAGACATTTGCACGCATATGCTTTATTCTGTCCTAATTATTTATTTCTTCAAAAGATACATGTGCATGTAATTtaagtg---agagaagccagtcagaaaaagccacatcgtctatgaggtcatttacatgaaatctccagaataggtaaatctg-tagaagacggagaagaaaacagatccatggctg--------ggggtggt-gggagag-gagggc
i chlSab2.chr6                  C 0 I 615
s calJac3.chr22_GL285922_random     40990 468 +    138250 TCACTGGCTTCT-CCAGAGGCACCAGGGAGCTGGGCACAGCCTGCAGGGAGGGCTTGGGGAGTGGTCCTGGAAGAGGAGCAGAGCTGGGTCAGCCTCCCTGCAGACC-TCGCCTGG--AACCCACTTCCCCCACCTGCTGGTGGATCCCA----------CAGG--------------AGGGAAGGACTCACCGCTCTGTGCTTG---CACATGCCCCAGACACAGCCCTGAGGAGAGAAGAAAGAGACTAGAGGCCAGGACTGACTTTTATAAACACTGCTGCCTGCTGGGTGCGGCGACAAGACATTTGCATGCCTGTGCTTTATTCTCTCCTAATCACTTATTTCTTCAAAAGACAcacaggcatgtaatttgagtg---agagaagccagtcagaaaaagccacattgtttacgatgtcatttatatgaaatatccagaaggggtaaatcta-cagaagacag----------agacacatggctg--------ggggtggtcgggagagcgaggac
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20088734 490 - 122678785 TCACCTGCGTCT-TCAGGGGTGCTAGGGAGCTAGGCAGAGCCTGGAGGGAGGGCTTGGGCAGGGTACCTGGAAGGGAAGCAGAATT---------TCCAAACAGACCTCCTCCTGGGTGCTCCCCTCCTCC--CACCCTCCTGGCCCTTGTGCAGGCACCCAGATCCAGAGGATTCCAGGGGAAGGACTCACCAAGCTGTGCTTGCACCACCTGCCCCAGACACAGCCCTGAGCAGAGAAGAAAAGCACCACCTGCTAGCATCTCCTGGAGGCCACACTTCTGCACGCAGAGCA-GGTAATGCCACATCTTCAGGCAGTCACTTTCTTCTGTCCTCAT---TTGCTT-----AAGGACACACACTCacataatttgagtgccagaagaagccagccacagaaggccacatattgtatgattccatttatctgaaacatgctcactaggtaaatctgctcagacatggag--------agattagtggttgccagaaactggggggt-gggtggc-aggggc
i canFam3.chr1                  C 0 C 0

a score=4279.000000
s hg38.chr19_GL949751v2_alt        951178 3 +   1002683 aag
s panTro4.chr19                  59944571 3 +  63644993 gag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56890970 3 +  60714840 gag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370408 3 - 106955855 gag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60672331 3 +  64156825 gag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55814003 3 +  59248254 gag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47921228 3 +  51301725 GAG
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     41458 3 +    138250 gag
i calJac3.chr22_GL285922_random C 0 I 1290
s canFam3.chr1                   20089224 1 - 122678785 -a-
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47624405 615 +  50890351 I

a score=14793.000000
s hg38.chr19_GL949751v2_alt        951181 11 +   1002683 gcatggtggcg
s panTro4.chr19                  59944574 11 +  63644993 gcgtggcggca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56890973 11 +  60714840 gcgtggcggcg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370411 11 - 106955855 gcgtggcggca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60672334 11 +  64156825 acgtggcggcg
i rheMac3.chr19                 C 0 I 599
s macFas5.chr19                  55814006 11 +  59248254 acgtggcggcg
i macFas5.chr19                 C 0 I 592
s papAnu2.chr19                  47921231 11 +  51301725 ACGTGGCGGCG
i papAnu2.chr19                 C 0 I 577
s canFam3.chr1                   20089225  5 - 122678785 ---ttgag---
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I

a score=17543.000000
s hg38.chr19_GL949751v2_alt        951192 32 +   1002683 tactgctCTCTGTGGACTTG--TTCGTGTTAGAC
s panTro4.chr19                  59944585 32 +  63644993 tactgCTATCTGTGGACTCG--TTCGTGTTAGAC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56890984 32 +  60714840 tactgCTATCTGTGGATTCG--TTCGTGTTAGAC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370422 32 - 106955855 tactgCTATCTGTGGATTCA--TTCATGTTAGAC
i nomLeu3.chr10                 C 0 C 0
s canFam3.chr1                   20089230 34 - 122678785 gagtgattttcatgggcatgatttccttttagac
i canFam3.chr1                  C 0 I 2803
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I

a score=25291.000000
s hg38.chr19_GL949751v2_alt        951224 63 +   1002683 ACGGTGGGCTCGTTCGTGTTAGACACGGTGGACTCGTTCGTGTTAGACACGGTGGGCTCGTTC
s panTro4.chr19                  59944617 62 +  63644993 ACGGTGGGCTCGTTCGCGTTGGACGCGGAGGGTTCGTTCGTGTTAGACGCGG-GGGCTCGTTC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56891016 63 +  60714840 ACTGTGGATTCGTTCGTGTTAGACACGGTGGATTCGTTCGTGTTAGACATTCTGGATTGGTTC
i ponAbe2.chr19                 C 0 T 84
s nomLeu3.chr10                 103370454 63 - 106955855 ACTGTGGATTCGTTCGTGTTAGACGCCGTGGATTCGTTCGTGTTAGACGCCGTGGATTCGTTC
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I

a score=300.000000
s hg38.chr19_GL949751v2_alt        951287 1 +   1002683 G
s panTro4.chr19                  59944679 1 +  63644993 G
i panTro4.chr19                 C 0 T 84
s nomLeu3.chr10                 103370517 1 - 106955855 G
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56891079 84 +  60714840 T
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I

a score=8898.000000
s hg38.chr19_GL949751v2_alt        951288 170 +   1002683 TGTTAGACACGGTGGGCTCGTTCGTGTTAGACACGGTGGACTCGTTCGTGTTGTGTTAGACACGGTGGACTCGTTCGTGTTAGACGCGGTGGACTCGTTCGTGTTAGACACGGTGGACTCGTTCGTGTTGTGTTAGACACGGTGGACTCGTTCGTGTTGTGTTAGACACG
s nomLeu3.chr10                 103370518 155 - 106955855 TGTTAGACGCCGTGGATTCGTTCGCGTTAGGCGCCGTGGATTCGTTC-----GCGTTAGGCGCCGTGGATTCGTTCGCGTTAGGCGCCGTGGATTCGTTCGCGTTAGGCGCCGTGGATTCGTTC-----GTGTTAGACGCCGTGGATTCGTTC-----GTGTTAGGCGCC
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56891079  84 +  60714840 T
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944680  84 +  63644993 T

a score=33146.000000
s hg38.chr19_GL949751v2_alt        951458 73 +   1002683 GTGGACTCGTTCGTGTTAGACACGGTGGGTTCGTTCGTGTTAGACACGGTGGGTTCGTTCGTGTTAGACGCGG
s panTro4.chr19                  59944596 73 +  63644993 GTGGACTCGTTCGTGTTAGACACGGTGGGCTCGTTCGCGTTGGACGCGGAGGGTTCGTTCGTGTTAGACGCGG
i panTro4.chr19                 T 84 M 773
s ponAbe2.chr19                  56890995 73 +  60714840 GTGGATTCGTTCGTGTTAGACACTGTGGATTCGTTCGTGTTAGACACGGTGGATTCGTTCGTGTTAGACATTC
i ponAbe2.chr19                 T 84 C 0
s nomLeu3.chr10                 103370673 73 - 106955855 GTGGATTCGTTCGTGTTAGGCGCCGTGGATTCGTTCGTGTTAGGCGCCGTGGATTCGTTCGTGTTAGACGCTG
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I

a score=6150.000000
s hg38.chr19_GL949751v2_alt        951531 28 +   1002683 TGGGTTCGTTCGTGTTAGACGCGGTGGA
s ponAbe2.chr19                  56891068 28 +  60714840 TGGATTGGTTCGTGTTAGACACTGTGGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370746 28 - 106955855 TGGATTCATTCGTGTTAGGCGCTGTGGA
i nomLeu3.chr10                 C 0 T 120
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=671.000000
s hg38.chr19_GL949751v2_alt        951559 12 +   1002683 CTCCTTCGTGTT
s ponAbe2.chr19                  56891096 12 +  60714840 TTCGTTCGTGTT
i ponAbe2.chr19                 C 0 T 113
s nomLeu3.chr10                 103370654  7 - 106955855 TTCGTTC-----
i nomLeu3.chr10                 T 120 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=677.000000
s hg38.chr19_GL949751v2_alt        951571 12 +   1002683 GTGTTAGACACG
s nomLeu3.chr10                 103370661 12 - 106955855 GTGTTAGGCGCC
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56891108 113 +  60714840 T
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=25015.000000
s hg38.chr19_GL949751v2_alt        951583 118 +   1002683 GTGGACTCGTTCGTGTTAGACACGGTGGACTCGTTCGTGTTAGACACGGTGGACTCGTTCGTGTTAGACACGGTGGACTCGTTCGTGTTGTGTTAGACACGGTGGACTCGTTCGTGTT
s ponAbe2.chr19                  56890995 113 +  60714840 GTGGATTCGTTCGTGTTAGACACTGTGGATTCGTTCGTGTTAGACACGGTGGATTCGTTCGTGTTAGACATTCTGGATTGGTTC-----GTGTTAGACACTGTGGATTCGTTCGTGTT
i ponAbe2.chr19                 T 113 T 29
s nomLeu3.chr10                 103370673 113 - 106955855 GTGGATTCGTTCGTGTTAGGCGCCGTGGATTCGTTCGTGTTAGGCGCCGTGGATTCGTTCGTGTTAGACGCTGTGGATTCATTC-----GTGTTAGGCGCTGTGGATTCGTTCGTGTT
i nomLeu3.chr10                 C 0 T 101
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=0.000000
s hg38.chr19_GL949751v2_alt        951701 58 +   1002683 GTGTTAGACACGGTGGGCTCGTTCGTGTTGTGTTAGACACGGTGGACTCGTTCGTGTT
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56891108 29 +  60714840 T
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e nomLeu3.chr10                 103370786 101 - 106955855 T
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=6514.000000
s hg38.chr19_GL949751v2_alt        951759 106 +   1002683 GTGTTAGACACGGTGGGCTCGTTCGTGTTAGACGCGGTGGGCTCGTTCGTGTTAGACGCGGTGGGCTCGTTCGTGTTGTGTTAGACACGGTGGGCTCGTTCGTGTT
s nomLeu3.chr10                 103370685 101 - 106955855 GTGTTAGGCGCCGTGGATTCGTTCGTGTTAGGCGCCGTGGATTCGTTCGTGTTAGACGCTGTGGATTCATTC-----GTGTTAGGCGCTGTGGATTCGTTCGTGTT
i nomLeu3.chr10                 T 101 T 12
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56891108  29 +  60714840 T
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=0.000000
s hg38.chr19_GL949751v2_alt        951865 29 +   1002683 GTGTTAGACACGGTGGGCTCGTTTGTGTT
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56891108 29 +  60714840 T
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e nomLeu3.chr10                 103370786 12 - 106955855 T
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=932.000000
s hg38.chr19_GL949751v2_alt        951894 12 +   1002683 GTGTTAGACACG
s ponAbe2.chr19                  56891079 12 +  60714840 GTGTTAGACACT
i ponAbe2.chr19                 T 29 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e nomLeu3.chr10                 103370786 12 - 106955855 T
e chlSab2.chr6                   47624405 615 +  50890351 I
e papAnu2.chr19                  47921242 577 +  51301725 I
e macFas5.chr19                  55814017 592 +  59248254 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=600.000000
s hg38.chr19_GL949751v2_alt        951906 1 +   1002683 G
s ponAbe2.chr19                  56891091 1 +  60714840 G
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55814609 1 +  59248254 g
i macFas5.chr19                 I 592 C 0
s papAnu2.chr19                  47921819 1 +  51301725 G
i papAnu2.chr19                 I 577 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     41461 1290 +    138250 I
e nomLeu3.chr10                 103370786 12 - 106955855 T
e chlSab2.chr6                   47624405 615 +  50890351 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=2241.000000
s hg38.chr19_GL949751v2_alt        951907 4 +   1002683 TGGG
s ponAbe2.chr19                  56891092 4 +  60714840 TGGA
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55814610 4 +  59248254 tgga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47921820 4 +  51301725 TGGA
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     42751 4 +    138250 TGTG
i calJac3.chr22_GL285922_random I 1290 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e nomLeu3.chr10                 103370786 12 - 106955855 T
e chlSab2.chr6                   47624405 615 +  50890351 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=2949.000000
s hg38.chr19_GL949751v2_alt        951911 4 +   1002683 CTCG
s ponAbe2.chr19                  56891096 4 +  60714840 TTCG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370774 4 - 106955855 TTCG
i nomLeu3.chr10                 T 12 C 0
s macFas5.chr19                  55814614 4 +  59248254 ttcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47921824 4 +  51301725 TTCC
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     42755 4 +    138250 TTCA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e chlSab2.chr6                   47624405 615 +  50890351 I
e rheMac3.chr19                  60672345 599 +  64156825 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=427215.000000
s hg38.chr19_GL949751v2_alt        951915 211 +   1002683 TTCGTGTTAGACA-TTGCCCATTGACTTCCTCAGTGGATGTGAGGAATGGGACCTGAGACATTGCTGTCCCTTCGTTTCCTCCCTTCAGTCTCCCAATATTAAATAATATCCAA---GTACATTACAATAGTATGCAATTGTA-TAGACAAGTATTGTAAATACtattgcatattgtatattattgt----attttattgtctatgtaatatATGCGATA
s ponAbe2.chr19                  56891100 211 +  60714840 TTCGTGTTAGACA-TTGCCCATTGACTTCCTCAGTGGGTGTGAGGAATGGGACCTCAGACATTGCTGTTCCTTCGTTTCCTCCCTTCAGTCTCCCAATATTAAATAATATCCAA---GTGCATTACAATAGTATGCAATTGTA-TAGACAAGTATTGTAAATACTATTGCATATTGTATATTATTGT----ATTTTATTGTCTATGTAATATATGCGATA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370778 211 - 106955855 TTCGTGTTAGACA-TTGCCCATTGACTTCCTCAGTGGATGTGAGGAATGGGACCTCAGACATTGCTGTTCCTTCGTTTCCTCCCTTCAGTCTCCCAATATTAAATAATATCCAA---GTGCATTCCAATAGTATGCAATTGTA-TACACAGGTATTGTAAATActattgcgtattgtatattattgt----attttattgtctatgtaatatatGCGATA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60672944 212 +  64156825 ttcgtgttagacatttgcccgttgacttcctcagtggatgtgaggaATGGGACCTCAGATATTGCTGTCCCTTCGTTTCCTCCCTTCGGTCT-CCAATATGAAATAATATCCAA---GGGCATTCCAATAGTACGCAATTGTATTAGACAAGTATTGTAAATACTATTGCATATTGTATATTGTTGT----ATTTTATTGTATATGTAATACATGCAGTA
i rheMac3.chr19                 I 599 C 0
s macFas5.chr19                  55814618 212 +  59248254 ttcgtgttagacatttgcctgttgacttcctcagtggatgtgaggaATGGGACCTCAGATATTGCTGTCCCTTCGTTTCCTCCCTTCGGGCT-CCAATATGAAATAATATCCAA---GGGCATTCCAATAGTACGCAattgtattagacaagtattgtaaatactattgcatattgtatattgttgt----attttattgtatatgtaATACATGCAGTA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47921828 210 +  51301725 TTCATGTTAGACA-TTGCCCGTTGACTTCCTCAGTGGATGTGAGGAATGGGACCTCAGATATTGCTGTCCCTTCGTTTCCTCCCTTCGGTCT-CCAATATGAAATAATATCCAA---GGGCATTCCAATAGTATGCAATTGTA-TAGACAAGTATTGTAAATACTATTGCATATTGtatattgttgt----attttattgCATATGTAATACATGCAGTA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47625020 202 +  50890351 TTCGTGTTAGACATTTGCCCGTTGATTTCCTCAGTGGATGTGAGGAATGGGACCTCAGATATTGCTGTCCCTTCGTTTCCTCCCTTCGGTCTCCCAATATGAAACAATATCCAA---GGGCATTCCAATAGTACACAATTGTA-TAGACAAGTATTGTAAATACTATTGCATATTGTATATTGTCAT--------------ATATGTAATATATGCAGTA
i chlSab2.chr6                  I 615 C 0
s calJac3.chr22_GL285922_random     42759 214 +    138250 TTAGAGTCAGGCA-CTGCACACTGCCGTCCTCAGTGGGTGTGAGGAGTGTGACCTCAGACATTGCCGTCCCTTCATCTCCTCCCTCC-GTCTCCCAGTATTAAACAGTATCCAGCACGTGCA---CAATGAGACGCGTTTGTG-TAGACAGTTATTGTGAATAGTATTGCATGTCGTATATCATGGTCTTTCTTTTATTGTACATGCAGTACATGCAGTA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e panTro4.chr19                  59944669 773 +  63644993 M

a score=76116.000000
s hg38.chr19_GL949751v2_alt        952126 27 +   1002683 AAACCCCACACTAATGGGATGCATTGG
s panTro4.chr19                  59945453 27 +  63644993 AAACCCCACACTAATGGGATGCATTGG
i panTro4.chr19                 M 773 C 0
s ponAbe2.chr19                  56891311 26 +  60714840 -AAACCCACACTAATGGGATGCATTGG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103370989 27 - 106955855 AAACCCCACACTAATGGGACGCACTGG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60673156 27 +  64156825 AAACCCCACACTAATGGGATGCGCTGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55814830 27 +  59248254 AAACCCCACACTAATGGGATGCGTTGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47922038 27 +  51301725 AAACCCCACACTAATGGGATGCATTGG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47625222 27 +  50890351 AAACCCCACACTAATGGGATGCATTGG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     42973 27 +    138250 GAACCCCACACTggccaggtgcggtgg
i calJac3.chr22_GL285922_random C 0 I 1464
e canFam3.chr1                   20089264 2803 - 122678785 I

a score=591042.000000
s hg38.chr19_GL949751v2_alt        952153 258 +   1002683 GCTCCAAGGATGGAGCAGGATGGAGCCTCAGCGTGTAAGTCAGGACGTCTCAGCATGTGCTGGCCATGGGTTTCCCGGTATTTACAACATTTGCTTGAATCAGTATTCCATGATTACATGATAGGATataatatatataata----atcgtttcaaatagcctgaaggaggatggggaaagttcccaacac--agaaaggatgcatgtttgagaagatgggtgtgctacttaccctgatctgattactatatgtatatacacat
s panTro4.chr19                  59945480 258 +  63644993 GCTCCAAGGATGGAGCAGGATGGAGCCTCAGCGTGTAAGTCAGGACGTCTCAGCATGTGCTGGCCATGGGTTTCCCGGTATTTACAACATTTGGTTGAATCagtattccatgattacatgataggatgtaatatatataata----atcgtttcaaatagcctgaaggaggatggggaaagttcccaacac--agaaaggatgcatgtttgagaagatgggtgtgctacttaccctgatctgattactatatgtatatacacat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56891337 264 +  60714840 GCTCCAAGGATGGAGCAGGATGGAGCCTCAGTGTGTAAGTCAGGACGTCTCAGCGTGTGCTGGCCATGGGTTTCCCGGTATTTACAACATTTGGTTGAATCAATATTCCATGattacatgataggatgtaatatatataataatatatcatttcaaatagtctgaaggaggatggtgaaagtttccaacacaaagaaaagatgcatgtttgagaagatgggtgtgctacttaccctgatctgatcactatatgtatatacacat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103371016 258 - 106955855 GCTCCGAGGATGGAGCAGGATGGCGCCTCAGTGTGTAAGTCAGGGCGTCTCAGCACGTGCTGGCCATGGGTTTCCCGGTATTTACAGCATTTGGTTGGATCAATATTCCAtgattacataatagaatgtaatatatataata----acagtttcgaatagcctgaaggaggatggtgaaaattcccaacac--agaaaggatgcatgtttgagaagatgggtgtgctacttaccctgatctgatcactatatgtatatacacat
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60673183 264 +  64156825 GCTCCAGGGATGGAGCAGGATGGAGCCCCAGTGTGTAAGTCAGGTCATCTCAGCGTGTACTGGCCATGGGTTTCACAGTATTTACAACGTTTGGTTGAATCGATATTCCATgattacatggtaggatgtaatatatatgataatatatcgtttcaagtagcctgaaggaggatggtgaaggttcccaacacagagaaaggatgcatgtttgagaacatgggtgtgctgcttaccctgatctgatcgctatatgtatgtatacat
i rheMac3.chr19                 C 0 I 681
s macFas5.chr19                  55814857 263 +  59248254 GCTCCAGGGATGGAGCAGGATGGAGCCCCAGTGTGTAAGTCAGGTCATCTCAGCGTGTACTGGCCATGGGTTTCACAGTATTTACAACGTTTGGTTGAATCGATATTCCGTgattacatggtaggatgtaatatatatgataatatatcgtttcaagtagcctgaaggaggatggtgaaggttcccaacacagagaaaggatgcatgtttgagaacatgggtgtgctgcttaccctgatctgatcgctatatgtatgtataca-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47922065 264 +  51301725 ACTGCAAGGATGGAGCAGGATGGAGCCCCAGTGTGTAAGTCAGGTCATCTCAGCGTGTACTGGCCATGGGTTTCACAGTATTTGCAACGTTTGGTTGAATCAATATTCCGTGATTACATGGTAGGATGTAATACATATGATAATATATCGTTTCAAGTAGCCTTAAGGAGGATGGTGAAAGTTCCCAACACAGAGAAAGGATGCATGTTTGAGAACATGGGTGTGCTgcttaccctgatctgatcactgtatgtatatacacat
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47625249 264 +  50890351 GCTCCAGGGATGCAGCAGGATGGAGCCCCAGTGTGTAAGTCAGGTCATCTCAGCGTGTACTGGCCATGGGTTTTGCAGTATTTGCAACGTTTGGTTGAATCaatattctgtgattacatggtaggatgtaatacatatgatagtatatcgtttcaagtagccttaaggaggatggtgaaagttcccaacacagagaaaggatgcatgtttgagaacatgggtgtgctgcttaccctgatctaatcactgtatgtatatacacat
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I

a score=60907.000000
s hg38.chr19_GL949751v2_alt        952411 58 +   1002683 atagtgcatatatgtaaacctacatctatacatacatgtgtatgtaCATATACACGTG
s panTro4.chr19                  59945738 58 +  63644993 atAGTGCAtatatgtaaacctacatctatacatacatgtgtatgtgcatatacatgtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56891601 58 +  60714840 atagtgcatatatgtaaacatacatctatacgtacatgtatatgtgcatatacatgtg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103371274 54 - 106955855 atagtgcatatatgtaaacatacatcta----tacatgtatgtgtgcatATACCTGTG
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55815120 14 +  59248254 --------------------------tgtgtgtatatgca------------------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47922329 58 +  51301725 atagtgcatatatgtaaacatacatctgtgcgtacatgtatatgtgcatatacatatg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47625513 58 +  50890351 atagtgcatatatgtaaacatacatctgtgcatacatgtatatgtgcatatacatatg
i chlSab2.chr6                  C 0 I 54
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=29762.000000
s hg38.chr19_GL949751v2_alt        952469 58 +   1002683 tgtacatacacacgtgtat----atgtatgtatatgtatatatgtatgcatgtgtgtgtgtg
s panTro4.chr19                  59945796 54 +  63644993 tgtacatacacatgtgtat----atgtatgtatacgtat----gtatgcatgtgtgtgtgta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56891659 62 +  60714840 tGtacatacatatacatataggcatatatgtatacatatgtgtatatgcatgtgtgtgtata
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103371328 58 - 106955855 TGTACatacatatacatac----atgtgtatgtatacatgtgtatatgcatGTGTGTGTATG
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47922387 56 +  51301725 --tggacatatgtgtgtgc----acatatgtatacgcacacatatatgtatatgtgtgtata
i papAnu2.chr19                 C 0 I 4
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e chlSab2.chr6                   47625571 54 +  50890351 I
e macFas5.chr19                  55815134  0 +  59248254 C
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=249796.000000
s hg38.chr19_GL949751v2_alt        952527 158 +   1002683 t----------gtgtgtgtgtgtgtatacatatgtatacaaatacatgtacatAAGCGATCCCCTCCTGgaattgcttgagcccaggaggtcaagtctgctgtgaggtaagattgcaccactggccgggcacggtggctcatgcctataatcccagcactttgggagg
s panTro4.chr19                  59945850 144 +  63644993 t------------------------atacatatgtataCAAATACATGTACATAAGCGATCCCCTCCTGgaattgcttgagcccaggaggtcaagtctgctgtgaggtaagattgcaccactggccgggtgcagtggctcatgcctataatcccagcactttgggagg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56891721 144 +  60714840 t------------------------atatatatgtatacaaatacacgtatataAGCGATCCCCTCCTGggattgcttgagcccaggaggtcaaggctgctgtgaggtaagactgcaccacCagccaggcgcggtggctcatgcctataatcccagcactttgggagg
i ponAbe2.chr19                 C 0 I 2941
s nomLeu3.chr10                 103371386 168 - 106955855 tatatatatatatatatatatatatatatatatGGATACAAATACATGTATATAAGCGATCCCCTCCTGggattgcttgaccccgggaggtcaagactgctgtgaggtaagattgcaccactggccgggcgcagtggctcatgcccataatcccagcactttgggagg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55815134 144 +  59248254 ------------------------tgtatatatgcatataaatacatatatataagtgaTCCCCTCCTGggattgcttgagcccaggaggtcaaggctgccgtgaggtaagattgcaccactggccaggcgcggtggctcacgcctataatcccagcactttgggagg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47922447 158 +  51301725 ----------tgtgtatatgcatgtgtatgtatgtatataaatacatgtatataagtGATCCCCTCctgggattgcttgagcccaggaggtcaaggctgccgtgagataagattgcaccactggccgggcgcggtggctcatgcctataatcccagcactttgggagg
i papAnu2.chr19                 I 4 C 0
s chlSab2.chr6                   47625625 158 +  50890351 ----------tgtgtatatgcatgtatatatgtgtatataaacacatgtatataAGTGATCCCCTCCTGggattgcttgagcccaggaggtcaaggctgccgtgaggtaagattgcaccactggccaggcacggtggctcatgcctataatcccagcactttgggagg
i chlSab2.chr6                  I 54 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=411980.000000
s hg38.chr19_GL949751v2_alt        952685 235 +   1002683 ccagggtgggcggatcacaaggtcaggagttcaagaccagcctggtcaacatggtgaaacaccatctctactaaaaataccagaaattagctgggcatggtggcacgtgcctgtaatcctagctactggggaggctgagtcaggagaatcacttgaacccgggaggcggaggttgcagtgagccaagatcacgccactacactccagcctgggcaacagagcaagactccatctc
s panTro4.chr19                  59945994 235 +  63644993 ccagggtgggcggatcacaaggtcaggagttcgagaccagcctggtcaacatggtgaaacaccatctctactaaaaatacaagaaattagctgggcatggtggcacgtgcctgtaatcctagctactggggaggctgagtcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactacactccagcctgggcaacagagcaagactccatctc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894806 235 +  60714840 ccagggtgggcggatcacaaggtcaggagttcgagaccagcctggtcaacatggtgaaacaccatctctactaaaaatacaaaaaattagctgggcatggtggcacgtgcctgtaatcccagctactcgggaggctgagtcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaagatcacgccactacactccagcctgggcaacagagcaagactccatctt
i ponAbe2.chr19                 I 2941 C 0
s nomLeu3.chr10                 103371554 234 - 106955855 ccagggtgggtggatca-aaggtcaggagttcaagaccagcctggtcaacatggtgaaacaccatctctactaaaaatacaaaaaattagctgggcatggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaaccctgcaggtggaggttgcagtgagccgagatcgtaccactgcattccagccttggtgacagagcgagattccatctt
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55815278 235 +  59248254 ccaaggtgggcagatcacaaggtcaggagttcgagaccagcctggtcaacatggtgaaacaccatctgtactaaaaatataaaaaattagctgggcatggtggcacgtacctataatcccagctacttgggaggctgagtcacgagaattgcttgaacccaggaggtggaggttgcagtgagctgagatcgcaccactgcattccagcctgggcaacacagcaagactccatctc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47922605 234 +  51301725 ccaaggtgggtggatcacaaggtcaggagttcgagaccagcctggtcaacatggtgaaacaccatctctactaaaaatataaaaaattagctgggcatagtggcacatgcctataatcccagctacttgggaggctgagtcaggagaattacttgaacccgggaggtggaggttgcagcgagctgagatcgtaccactgcattccagcctgggcaacac-gcaagactccatctc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47625783 235 +  50890351 tcaaggtgggcagatcagaaggtcaggagttcgagaccagcctggtcaacatggtgaaacaccatctctactaaaaatataaaaaattagctgggcatggtggcacgtgcctgtaatcccagctacttgggaggctgagtcaggagaattacttgaacccaggaggtggaggttgcagtgagccgagatcgtgccattgcactccagcctgggagacacagcaagactccatctc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=143443.000000
s hg38.chr19_GL949751v2_alt        952920 141 +   1002683 gagg--aaaaaaaaaaa--tgatattgccccattgcactccagact-gacaacagagcaagaccctgtctcagaaaacgaagaggaggaggaaaaaaaaaGTACTAAttatctgaaattccaatttaaccaggcatccagtgtttt
s panTro4.chr19                  59946229 134 +  63644993 gagg--gaaaaaaaa----tgatattgccccattgcactccacact-gacaacagagcaagaccctgtctcagaaaaagaagaagag-----aaaaaaaaGTACTAAttatctgaaattccagtttaaccaggcatccagtgtttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56895041 140 +  60714840 gagg--aaaaaaaaaaaaTTgatattgcaccattgcactccagact-ggcaac-gagcaagaccctgtctcagaaaaagaagaagaggag--aaaaaaaagtactaattatctgaaattccaatttaaccaggcatccagtgtttt
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55815513 141 +  59248254 -gag--aaaaaaaaaat--tgagattgcaccactgcactcaagactgggcaacagagcaagaccctgtctcagtaaaataagaagaagagaaaaaaaaaGGTACTAAttatctgaaattcaaatttaaccaggcatccagtgtttt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47922839 135 +  51301725 -aag--aaaaaaaaaat--tgagattgcaccactgcactcaggactgggcaacagagcaagaccctgtctcagtaaaataagac------aaaaaaaaaggtactaattatctgaaattcaaatttaaccaaGCATCCAGTGTTTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47626018 142 +  50890351 -aagaaaaaaaaaaaat--tgagattgcaccactgcactcaggactgggcaacagagcaagaccctgtctcagtaaaataagaagagga-gaaaaaaaaaGTACTAAttatctgaaattcaaatttaaccaagcatccggtgtttt
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e nomLeu3.chr10                 103371788   0 - 106955855 C
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=536423.000000
s hg38.chr19_GL949751v2_alt        953061 684 +   1002683 atctggtaaccctCATTCTTacacacacac-------acacacacacacac------acacaAaggcgggatagttgtcattcccactgtaaacataaggaaactgggcagaggccaagcaaccttgtgtagctcacatagcaagaagtgggtgaacccagctcatgtcttgactctgagctcagAGAGTGACAACTTGTCACCAGCGCCCCCATAGCCACCACCCTTTGTCCACCCCAGGCTCCCTCTGCACCCCAACGCAAGCTCCG-GCCGCTTCTCTGTCCCCCTCCTCCTGCCGCATCACAGCCCACCTCAGCCTCTTTGTAGGTTTCCATGCGACGCTGTACCATGGCTGGGAGTCTTccaggcgccgtgctgagcgccttctgtgcatggactccaagtcgccataatcgtacgggttacccaccattatcagtcccctcttatacatcaggctagtgagacagtatcttatccacagtcctacagctggcagga-gtagattcaaaccctagcagCACCAATTAGTGGTAAAGAGTGTGGACTTGGgaacttacaggagtagagagcacagtggtggttacc-ggggcggtggggtaaggtttggggagatgttggtcagaggagg-acagtttcagttggacaagaggagtatgtcttggagatctactgcacatcatggtgactgtagtta
s panTro4.chr19                  59946363 691 +  63644993 atctggtaaccctCATTCTTacacacacaccacacacacacacacacacac------acacaAaggtgggatagttgtcattcccactataaacataaggcaactgggcagaggccgagcaaccttgtgtagctcacatagcaagaagtgggtgaacccagatcatctcttgactctgagctcagAGAGTGACAACTTGTCACCAGCGCCCCCGTAGCCGCCACCCTTTGTCCACCCCAGGCTCCCTCTGCACCCCAACCCAAGCTCCG-GCCGCTTCTCTGTCCCCACCCTCCTGCCGCATCACAGCCCACCTCAGCCTCTTTGTAGGTTTCCATGCGACGCTGTACCATGGCTGGGAGTCTTccaggcgccgtgctgagcgcctgctgtgcatggactccaagtcgccataatcgtacgggttagccaccattatcagtcccctcttatacatcaggctagtgagacagtatcttatccacagtcctgcagctggcagga-gtagattcaaaccctagcagCGCCAATTAGTGGTAAAGAGTGTGGACTTGGgaacttacaggag-agagagcacagtggtggttaccaggggtggtgggttaaggtttggggagatgttggtcaaaggagg-acagtttcagttggacaagaggagtatgtcttggagatctactgcacatcatggtgactgtagtta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56895181 685 +  60714840 atctggtaaccctCATTCTTacacacacgc-------acacgcacacacac------acacaAaggtgggatagttgtcattcccactgtaaacataaggaaactgggcagaggatgagcaaccttgtgtagctcacatagcaagaagtgggtgaacccagatcatctcttgactctgagctcagAGAGTGACAACTTGTCACCAGCTCCCCCGTGGCCACCACCCTTTGTCCACCCCAGGCTCCCTCTGCACCCCAACCTAAGCTCCGTGCCGCTTCTCTGTCCCCCTCCTCCTGCCCCATCACAGCCCCCCTCAGCCTCTTTGTAGGTTTCCATGCGATGCTGTACCATGGCTGGGAatcttccaggcgccgtgctgagcgccttctgtgcatggactccaagtcaccataatcgtacgggttagctaccattatcagtcccctcttatacatcaggctagtcagacagtatcttatccacagtcctacagctggcagga-gtagatgcaaaccctagcagCACCGATTAGTGGTAAAGAGTGTGGACTTGGgaacttacaggagtagagagcgctgtggtggttaccaggggtggtggggtaaggtttgaggagatgttggtcaaaggagg--cagtttcagttggataagaggagtatgtcttggagatctactgcacatcatggtgactgtagtta
i ponAbe2.chr19                 C 0 C 0
s papAnu2.chr19                  47922974 672 +  51301725 ATCTGGTAACCCTcattcttacacacacac-------acacacacacacacacacacacacagaggcggGATAGTTGTCATTCCCACTGCAAAC--AAGGAAACTAGGCAGAGGCTGAGCAACCTTCCGTAGCTCACATAGCAAGAAGTGGGTGAACCCAGATCATCTCTTGACTCTGAGCTCAGAGAATGACAACTGGTCACCAGCTCCCCAGTGGCCACCACCCATTGTCGACCACAGGCTCCCTCTGCACCCCAACCCAAGCTCCG-GCCGCTTCTCTgtccccctcctcctgccccatcacagcccacctcagcctctttgtA---------GCAACCCTGTACCATGGCTGGGAACCTTCCAGGTGCCGGGCCGAGCGCCTCCTGTGCGTGGACTCCAAGTCGCCGTAATCGCACGGGTTAGCTAACGTTATCAGTCCCCTCTTACACATCAGGCTAGTGAGACAGAATCTTATCCACAGTCCTACACCTGGCAGGAGGGGAGTTCAAACCCTAGCAGCACCGTTTAGTGGTAAAGAGTGTGGACCTGGGAATTTACAGGAGCAGA---------GGTGGTTACC-GGGGTGGTGGGGTAAGgtttggggagatgttggtcgaAGGAGACACAGTTTTAGTTGGACAGGAGGAGTGTATCTTGGAGATCTATTGCACATcgtggtgactgtagtta
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47626160 651 +  50890351 atctagtaaccctCATTCTTacacacacac-------acacacacacacac------------aggcaggatagttgtcattcccactgcaaac--aaggaaactgggcagaggctgaacaaccttctgtagctcacatagcaagaagtgggtgaacccagat-gtctcttgactctgagctcagAGAGTGACAACTGGTCACCAGCTCCCCAGTGGCCACCAGCCTTTGTCAACCACAGGCTCCCTCTGCACCCCAACCCAAGCTCCG-GCCGCTTCTCTGTCCCCCTCCTCCTGCCCCATCACAGCCCACCTCAGCCTCTTTGTAGGTTTCCATGCGACCCTGTACCATGGCTGGGAACCTTCCAGGTGCCGTGCTGAGCGCCTCCTGTGTGTGGACTCCAGGTCGCCGTAATCGTACGGGTTAGCTACCGTTATCAGCCCCCTCTTACACATC-----------------TCTTATCCACAGTCCTACACCTGGCAGGAGGTGGGTTCAAACCCTAGCAGCACCGTTTAGTGGTGGAGAGTGTGGACTTGGgaatttacaggagcaga---------ggtggttacc-ggggtggtggggtaaggtttggggagatgttggtcaaaggagacacagtttcagttggacaggaggagtgtgtcttggagatctattgcacgtcgtggtgactgtagtta
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e nomLeu3.chr10                 103371788   0 - 106955855 C
e macFas5.chr19                  55815654   0 +  59248254 C
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=244771.000000
s hg38.chr19_GL949751v2_alt        953745 200 +   1002683 ataacaacatattgtacacttgcatatcaccgatagtagattttaaatgttctcaccggccgggcgcgctggctcacacctgtaatcc---cattttgggaggccaaggtgggcggatcacctgaagtcaggagttcgagagcagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcggggcgta
s panTro4.chr19                  59947054 200 +  63644993 ataacaacatattgtacacttgcatatcactgatagtagattttaaatgttctcaccggctgggcgcggtggctcacacctgtaatcc---cattttgggaggccaaggtgggcggatcacctgaagtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctgctaaaaatacaaaaattagcggggcgta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56895866 200 +  60714840 ataacaacatattgtacacttgcatatcactgagagtagattttaaatgttctcaccggccgggcgcggtggctcacgcctgtaatcc---cattttgggaggccgaggtgggcggatcacctgaagtcaggagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagtggggcgtA
i ponAbe2.chr19                 C 0 M 221
s macFas5.chr19                  55815654 201 +  59248254 atAACAACATATTGCACACTCGCATATCACTGAGAGTAGGTTTTAAA-GTTCTCACTggccaggcgcagtggctcacacctgtaatcccagcattttgggaagccaaggcgggtggctcacctgaagtcaggagttcaagaccagcctgaccaacatgg-gaaaccctgtctctagtaaaagtacaaaaataagctgggcgta
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47923646 202 +  51301725 ataacaacATATTGCACACTCGCATATcactgagagtagattttaaa-gttctcactggccaggcgcggtggctcacacctgtaatctcagcattttgggaagccaaggcgggtggatcacctgaagtcaggagttcaagaccagcctgaccaacatggtgaaaccctgtctctactaaaagtacaaaaataagatgggcgta
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47626811 202 +  50890351 ataacaacatattgcacactcgcatatcactgagagtagattttaaa-gttctcacTggccgggcgcggtggctcatgcctgtaatcccagcattttgggaagccaaggcgggtggatcacctgaagtcaggagttcaagaccagcctgaccaacatggtgaacccctgtctctactaaaagtacaaaaataagctgggcgta
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e nomLeu3.chr10                 103371788   0 - 106955855 C
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=13116.000000
s hg38.chr19_GL949751v2_alt        953945 14 +   1002683 gtggcaggagcctg
s panTro4.chr19                  59947254 14 +  63644993 gtggcaggagcctg
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55815855 14 +  59248254 gtggtaggagcctg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47923848 14 +  51301725 gtggcaggagcctg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47627013 14 +  50890351 gtggcaggagcctg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56896066 221 +  60714840 M
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e nomLeu3.chr10                 103371788  0 - 106955855 C
e rheMac3.chr19                  60673447 681 +  64156825 I

a score=249195.000000
s hg38.chr19_GL949751v2_alt        953959 203 +   1002683 taatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagccaacgtcatgccactgcgctccagtctgggcaacagagtgagactccatgtcaaaaaataaaaataaataaaaataaaTGAGcgtggaatactactcagccattaaaaggagtgaaataatgtcttttggcca
s panTro4.chr19                  59947268 203 +  63644993 taatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaatgtcatgccactgcactccagtctgggcaacagagtgagactccatgtcaaaaaataaaaataaataaaagtaaaTGAGcgtggaatgctactcagccattaaaaggagtgaaataatgtcttttggcca
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60674128 197 +  64156825 taatcccagctacccaggaggctgaggcaggagaatcacttgaacctgggagatggaggttgcggtgagctgacatcacaccactgcactccagcctgggcgacagagtgagactctgtgtca------aaaaataagtaaaaataaaTGAGTGtggaatactactcagccattaaaaggaacaaaataatgtcctttggcca
i rheMac3.chr19                 I 681 C 0
s macFas5.chr19                  55815869 197 +  59248254 taatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggagatggaggttgcggtgagctgacatcacaccactgcactccagcctgggcgacagagtgagactctgtgtca------aaaaataagtaaaaataaaTGAGTGtggaatactactcagccattaaaaggaacagaataatgtcctttggcca
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47923862 197 +  51301725 taatcccagctactcaggaggcagaggcaggagaatcacttgaacctgggagatggaggttgcagtgagttgacatcatgccactgcactccagcctgggcgacagagtgagactctgtgtca------aaaaatcagtaaaaataaatgagtgtgaaatactactcagccattaaaaggaacaaaataatgtcctttggcca
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47627027 197 +  50890351 taatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggagatggaggttgcagtgagctgacatcatgccactgcactccagcctgggcgacagagtgagactccatgtca------aaaaataagtaaaaataaaTGAGTGtggaatactactcagccattaaaaggaacaaaataatgtcctttggcca
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56896066 221 +  60714840 M
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e nomLeu3.chr10                 103371788   0 - 106955855 C

a score=461889.000000
s hg38.chr19_GL949751v2_alt        954162 276 +   1002683 ggcacagtggctcacatctgtaatgccagcactctgggaggccgaggtgggtggatcacgaggtcaagagatcaagaccatcctgcccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttaaacccgggaggtggagtttgcagtaagccgagatcacaccactgcactccagccttggtgagagagcgagattccgtcttt
s panTro4.chr19                  59947471 276 +  63644993 ggcacagtggctcacatctgtaatgccaatactctgggaggccgaggtgggtggatcacgaggtcaagagatcaagaccgtcctgcccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttaaacccgggaggtggagtttgcagtaagccgagatcacaccactgcactccagccttggtgagagagcgagattccgtcttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56896287 276 +  60714840 ggcacagtggctcacatctgtaatgccagcagtctgggaggtcgaggcaggtggatcacgaggtcaagagatcaagaccatcctccccaacacggtgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggtggagtttgcggtgagccgagatcacaccactgcactccagcctcggtgagagagcgagattccgtctta
i ponAbe2.chr19                 M 221 C 0
s rheMac3.chr19                  60674325 271 +  64156825 ggcacagtggctcacacctgtaatgccagcactctgggaggccgaggcgggtggatcatgaggtcaagagatcaagaccatcctggctaacacggtgaaa-cccgtctctactaaaaatacaaaaattagccgggcgtggtgac-ggcgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagctgagatcacgctgctgtactccagtctcggc--aacagcgagattccagctc-
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55816066 271 +  59248254 ggcacagtggctcacacctgtaatgccagcactctgggaggccgaggcgggtggatcatgaggtcaagagatcaagaccatcctggctaacacggtgaaa-cccgtctctactaaaaatacaaaaattagccgggcgtggtgac-ggcgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagctgagatcacgctgctgtactccagtctcggc--aacagcgagattccagctc-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47924059 273 +  51301725 ggcacagtggctcacgcctgtaatgccagcactctgggaggccgaggcgggtggatcatgaggtcaagagatcaagaccatcctcctcaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagccaagatcacgctgctgTACTCCAGTCTCAGC--AAcagccagattccatctc-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47627224 273 +  50890351 ggcacagtggctcacacctgtaatgccagcactctgggaggccgaggccggtggatcatgaggtcaagagatcaagaccatcctcctcaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggaggaggttgcagtgagccgagatcatgctgctgtactccagcctcggc--aacagccagattccgtctc-
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I
e nomLeu3.chr10                 103371788   0 - 106955855 C

a score=16509.000000
s hg38.chr19_GL949751v2_alt        954438 14 +   1002683 aaaaaaaaaaaaaa
s panTro4.chr19                  59947747 14 +  63644993 aaaaaaaaaaaaaa
i panTro4.chr19                 C 0 I 185
s ponAbe2.chr19                  56896563  8 +  60714840 aaaaaaaa------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103371788 14 - 106955855 aaaaaaaaaaaaaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60674596 11 +  64156825 aaaaaaaaaaa---
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55816337 10 +  59248254 -aaaaaaaaaa---
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47924332 11 +  51301725 aaaaaaaaaaa---
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47627497 11 +  50890351 aaaaaaaaaaa---
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I

a score=1447791.000000
s hg38.chr19_GL949751v2_alt        954452 632 +   1002683 aaagtcttttgcagcaacttggatggagctggaaggcattattctaagtaaagtaatacaggagtggaaaacaaaaatctgtatattctcacttataagtgagagctaagctgtgggtatgcaaaggc----atgcagagtgatgtaatggacttcagagactcagaagggaagggcagaagtggggcagggatgaaaaactacacattaggtacaaggtacactagtcaggtgacaggtgcactaaaatctcagaattcaccagaatataattcatccatgtaaccaagaaccacttgtatcccaaaagctactgaagcaacaa----GCCAGATGCAGTAACCTGTACAGGCcacacctgtaaccccaacactttgggaggccgaggtgggtggatcgcttgagcccaggagttcaagaccagcctgggcaacatagcg-gacccccgtaact-aaaaaaattacaaaaacaagccaggcatgatggtgtacaactgtagttccagatactcaggaggctgatggggaggcactggttgagcctgggaggttgaggctgcagtgagccatgatcatgccactgccctcctgcctgggtgacagaagtgaggccctatctcaaataaaattaaataaataa
s panTro4.chr19                  59947946 632 +  63644993 aaagtcttttgcatttacttggatggaactggaaggcattattctaagtaaagtaatacaggagtggaaaacaaaaatctgtatattctcacttataagtgagagctaagctgtgggtatgcaaaggc----atgcagagtgatgtaatggacttcagagactcagaagggaagggcagaagtggggtagggatgaaaaactacacattaggtacaaggtacactagtcaggtgacaggtgcactaaaatctcagaattcaccagaatataattcatccatgtaaccaagaaccacttgtatcccaaaagctactgaagcaacaaTTAAGCCAGATGCAGTAACCTGTACAGGCcacacctgtaaccccaacactttgggaggccgaggtgggtggatcgcttgagcccaggagtttgagaccagcctgggcaacatagcgagacccccataact-aaaaaaattacaaaaatgagccaggcatgatggtgtgcaactgtagttccagctactcaggaggctgatggggaggcattggttgagcctgggaggttgaggctgcagtgagccatgatcatgccactgccctccagcctgggtgacagaagtgaggccctatctc-----aaattaaataaataa
i panTro4.chr19                 I 185 C 0
s ponAbe2.chr19                  56896571 638 +  60714840 aaagtcttttgcagcaacttggatggaggtggaaggcattattctaagtaaagtaacacaggagtggaaaacaaaaatctgtatgttctcacttataagtgagagctaagctgtgggtatgcaaaggc----atgcagagtgatgtaatggacttcggagactcagaagggaagggcagaaggcgggtagggatgaaaaactacacattaggtacaaggtacagtagtcaggtgacaggtgcactaaaatctcagaattcaccagaatagaattcatccatgtaaccaagaaccacttgtatcccaaaagctactgaagcaaaaaTTAAGCCAGATGCAGTAACCTGTACAGGtcacacctgtaaccccagcactttgggaggctgaggtgggtggatcgcttgagcccaggagttcgagaccagcctgggcaacatagtgagacccccgtaactaaaaaaaatcacaaaaatcagccaggcatgatggtgtgcaactgtagttccagctactcaggaggctgatggggagggattgattgagcctgggaggttgaggctgcagtgagccatgatcatgccactgcactccagcctgggccacagaagtgaggccctgtctcaaataaaattaaacaaataa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103371802 631 - 106955855 aaagtcttttgcagcaacttggatggagctggaaggcattattct-----aagtaacacaggagtggaaaacaaaaatctgtattttctcacttataagtgagacctaagctgtgggtatgcaaaggc----atgcagagtgatgtaatcgacttcagacactcagaagggaagggcagaaggggggtagggatgaaaaactacacattaggtacaaggtacactagtcaggtgacaggtgcactaaaatctcagaattcaccagaatataatccatccacataaccaagaaccacttgtatcccaaaagctgttgaagcaaaCATTAAGCCAGATGCAGTAACCTGTAGAGGtcacacctgtaaccccaacactttgggaggctgaggtgggtggattgcttgagcccaggagttcgagaccagcctgggcaacatagcgaga-ccccgtaact-acaaaaattacaaaaatgagccaggcatgatggtgtgcaactgtagttccagctattcaggaggctgatggggaaggactggttgagcctgggaggttgaggctgcagtgagccatgatcatgccactgtactccagcctgggtgacagaagtgaagccctgtctcaaataaaattaaataaataa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60674607 630 +  64156825 at-gtc--ttgcagcaacttggatgtagctgg-aggcattattctaagtaaagtaacacaggagtggaaaacaaaaatctgtatgttctcacttacaagtgagagctaagctgtgggtatgcaaaggc----atacagggtgatgtaatggacttcagagactcagaagagaagggcagaaggtgggtagggatgaaaaactacacattaggtacaaggtatactactcaggtgacaggggcactaaaatctcagaattcaccactatatagttcatccatgtaaccaacaaccacttgtatcccaaaagcaattgaagcaaaaaTTAAGCCAGATGCAGTAACCTGTACAGGtcaaacctgtaaccccaacactttgggaggccgaggtaggtggatcgcttgaacccaagagttcgagaccagcctgggcagcatagcgaga-ccccataact-acaaaaattacaaaaatgagccaggcatgatggtgtgcaactgtagttccagctactcaggaggctgatggggaaggatcggttgagcctgggaggttgaggctagagtgagccatgatcatgccactgcactccagcctgggtgacagaa--gaggccctgtctcaagtaaaattaaataaataa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55816347 632 +  59248254 at-gtc--ttgcagcaacttggatgtagctgg-aggcattattctaagtaaagtaacacaggagtggaaaacaaaaatctgtatgttctcacttacaagtgagagctaagctgtgggtatgcaaaggc----atacagggtgatgtaatggacttcagagactcagaagagaagggcagaaggtgggtagggatgaaaaactacacattaggtacaaggtatactactcaggtgacaggggcactaaaatctcagaattcaccactatatagttcatccatgtaaccaacaaccacttgtatcccaaaagcaattgaagcaaaaaTTAAGCCAGATGCAGTAACCTGTACAGGtcaaacctgtaaccccaacactttgggaggccgaggtaggtggatcgcttgaacccaagagttcgagaccagcctgggcagcatagcgaga-ccccataact-acaaaaattacaaaaatgagccaggcatgatggtgtgcaactgtagttccagctactcaggaggctgatggggaaggattggttgagcctgggaggttgaggctagagtgagccatgatcatgccactgcactccagcctgggtgacagaagtgaggccttgtctcaagtaaaattaaataaataa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47924343 622 +  51301725 acagtc--ttgcagcaacttggatgtagctgg-aggcattattctaagtaaagtaacacaggagtggaaaacaaaaatc--tatgttctcacttacaagtgagagctaagctgtgggtatgcaaaggc----atacggGGTGATGTAATGGACTTCAGAGACTCAGAAGGGAAAGGCAGAAGGGGGGTAGGGATGAAAaactacacattaggtacaaGGTATACTACTCAGGTGACAGgggcactaaaatctcagaattcaccactatatagTTCATCCATGTAATCAATAACCACTTGTATCCCAAAAGCAATTGAAGCAAAAATTAAGCCAGAGGCAGTAACCTGTACaggtcacacctgtaaccccaatgctttgggaggccgaggtgggtggatcgcttgaacccaagagttcgagaccagcctgggcagcatagcaaga-ccccataact-acaaaaattacaaaaatgagccaggcatgatggtgtgcaactgtggttccagctactcaggaggctcatggggaaggattggttgagcctgggaggttgaggctgcagtgagccatgatcatgccactgcactccagcctgggtgacagaagtgaggccctgtctcaagtaaaatt---------a
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47627508 634 +  50890351 aaagtc--ttgcagcaacttggatgtagctggaaggcattattctaagtaaagtaacacaggagtggaaaacaaaaatctgtatgttctc----acaagtgagagctaagctgtgggtgtgcgaaggcgtatatacagggtgatgtaatggacttcagagactcagaagggaagggcagaaggggggtagggatgaaaaactacacattaggtacaaggtacactactcaggtgtcaggtgcactaaaatcccagaattcaccactatatagttcatccatgtaaccaacaaccacttgtatcccaaaagcaattgaagcaaaaaTTAAGCCAGAGGCAGTAACCTGTACAGGtcacacctgtaaccccaacactttgggaggccgaggtgggtggatggcttgaacccaacagttcgagaccagcctgggcagcatagcgaga-ccccataact-acaacaattacaaaaatgagccaggcgtgatggtgtgcaactctagttccagctactcaggagactgatggggaaggattggttgagcctgggaggtggaggctgcagtgagccatggtcatgtcactgcactccagcctgggtgacagaagtgaggccctgtctcgagtaaaattaaataaataa
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     43000 1464 +    138250 I

a score=715218.000000
s hg38.chr19_GL949751v2_alt        955084 273 +   1002683 aaGTTAAAAC-Aggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtgga--acctgaagtaaggagcttgagaccagcctggccaacatggtgaaaccccgcccctactaaaaatacaataatt-agccagacctggtggcagatgcctgtaatcccaactattcgggaggctgaggcaggagaatcacttggacccgggaggcagagtttgcagtgagctgagatcatgccattgcattccagcctgagcgac
s panTro4.chr19                  59948578 273 +  63644993 aaGTTAAAAC-Aggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtgga--acctgaagtaaggagctcgagaccagcctggccaacatggtgaaacgccgcccctactaaaaatacaataatt-agccagacctggtggcagatggctgtaatcccaactactcgggaggctgaggcaggagaatcacttggacccgggaggcagagtttgcagtgagctgagatcatgccattgcactccagcctgagcgac
i panTro4.chr19                 C 0 M 571
s ponAbe2.chr19                  56897209 275 +  60714840 aaGTTAAAAC-Aggccggacacagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaagtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatt-agccagacctggtggcggatgcctgtaatcccagctactcgcgaggctgaggcagaagaatcacttggacccgggaggcggagtttgcagagagctgagatcatgccattacactccagcctgagcgac
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103372433 275 - 106955855 aGGTTAAAAC-Aggccgggcgcggtgcctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagttcgagaccagcctggccaacatggtgagaccccgtctttactaaaaatacaaaaatt-agccagacctggtggcagatgcctgtaatcccagctactcgggagtctgaggcaggagaatcacttggacccgggaggcggagtttgcagtgagctgagatcacaccactgcactccagcctgtgtgcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60675237 275 +  64156825 aaGTTAAAAC-Aggccggatgcggtggctcacgcctgtaaccccagcactttgggaggccgaggcgggtagatcacctgaagtcaggagttcaagtccagcctggtcaacatggtgaaaccccgtctctactaaaaatataaaaatt-agccggacctggcggtggatgcctgtaatcccagctacttcggaggctgaagcaggagaatcacttggacccaggaggcagagtttgcagtgagccaagatcgtgccactgcactccagcctgagcaac
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55816979 275 +  59248254 aaGTTAAAAC-Aggccggatgcggtggctcacgcctgtaaccccagcactttgggaggccgaggcgggtagatcacctgaagtcaggagttcaagtccagcctggtcaacatggtgaaaccccgtctctactaaaaatataaaaatt-agccggacctggcggtggatgcctgtaatcccagctacttcggaggctgaagcaggagaatcacttggacccaggaggcagagtttgcagtgagccaagatcgtgccactgcactccagcctgagcaac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47924965 276 +  51301725 aagttaaaac-aggctggacgcggtggctcacgcctgtaaccccagcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcaagtccagcctggccaacatgttgaaaccctgtctctactaaaaatataaaaattaagcgGGAcctggtggtagatgcctgtaatcccagctacttcggaggctgaagcaggagaatcacttggacccaggaggctgagtttgcagtgagccaagatcgtgccactgcactccagcctgagcgac
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47628142 275 +  50890351 aaGTTAAAAC-Aggccggacgcggtagctcacgcctgtaaccccagcactttgggaggccgaggcggggggatcacctgaagtcaggagttcaagtccagcctggccaacatggtgaaaccctgtctctactaaaaatataaaaatt-agccggacctggtggtagatgcctgtaatcccagctacttcagaggctgaagcaggagaatcacttggacctgggaggcggagtttgcagtgagctgagatcgtgccactgcactccagcttgagcgac
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     44464 227 +    138250 aagcaaaaaCGAAGCCAGACACTGTGGCTCACACCTGTAACccc----------------------------------------aggagttcaagaccagcctgggcaacatagcgagatcctgt---------aactacgaaaatt-agccaggcgtgatggtatgcagctggagttccagctactcaggagatagagggggagggattgcttgagcctgggaggtggaggttgcagtgagccatgatcgtgccactgcactccagcctgggtgac
i calJac3.chr22_GL285922_random I 1464 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I

a score=415583.000000
s hg38.chr19_GL949751v2_alt        955357 213 +   1002683 cgactgagcgagactccatctc------aa---aaaacaaacaaaaa-----gaaaaaaagaaTACATCCATGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACCCTCTCATCTCCAGTAATGCAACCATCTTCTTCCTGCTTAGCCTTTTGGAGATGCTGTCCCTTTAGTGGTCAAATT---CTGAAGAAATCAGGAAATAATGCATTCGACATGCCCA
s ponAbe2.chr19                  56897484 206 +  60714840 cgactgagcgagactccatctc------aa---aaaacaaacaaaca------------agaaTACATCCGTGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACCCTCTCATCTCCAGTAATACAACCATCTCCTTCCTGCTTAGCCTTTTGGAGATGCTATCCCTTTAGTGGTCAAATT---CTGAAGAAATCAGGAAATAATGCATTCGACATGCCCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103372708 216 - 106955855 cgactgagcgagactccatctc------aa---aaaaaaaaaaaaaaaacaaaaaaaaCAGAACACATCCGTGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACCTTCTCATCTCCAGT--TACAACCATCTCCTTCCTGCTTAGCCTTTTGGAGATGCTGTCCCTTTAGTGGTCAAATT---CTGAAGAAATCAGGAAATAATGCATTCGACATGCCCA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60675512 220 +  64156825 caacagagcgagactccatctcaaaaaaaa---aaaaaaaaaaaaaaGTT-------AAAGAATACATCCGTGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACCCTCTCATCTCCAGTAACACAACCATCTCCTTCCTGCTTAGCCTTTTGGAGATGCTGTCCCTTTAGTGGTCAAATTCTCCTGAAGAAATCAGGAAATAATGCATTCGACATGCCCA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55817254 214 +  59248254 caacagagcgagactccatctc------aa---aaaaaaaaaaaaaaGTT-------AAAGAATACATCCGTGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACCCTCTCATCTCCAGTAACACAACCATCTCCTTCCTGCTTAGCCTTTTGGAGATGCTGTCCCTTTAGTGGTCAAATTCTCCTGAAGAAATCAGGAAATAATGCATTCGACATGCCCA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47925241 204 +  51301725 caacagagcgagactccgtcta---cacaa---aaaaaaaaaaaaaatttt-aaaacaaagaatacaCCCATGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACTCTCTCATCTCCAGTAACACAACCATCTCCTTCCTGCTTAGCCTTTTGGAGATGCTGTCCTTTTAGTGGTCAAATTCTCCTGAAGAAATCAGGAAAT-------------------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47628417 213 +  50890351 caacagagcgagactccatctc-------a---aaaaaaaaaaaaaaGTT-------AGAGAATACATCCGTGGATGGATAATGAATGAGAGGTTGTTTATATTCACAGTTAACCCTCTCATCTCCAGTAACACAACCATCTCCTTCCTGCTTAGCCTTTTGGAGATGCTGTCCCTTTAGTGGTCAGATTCTCCTGAAGAAATCAGGAAATAATGCATTCGACATGCCCA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     44691 205 +    138250 ---aaaagtgagaccctgtctc------aaaTCAAATTACATAAAAATTA-------AAATACTACGTCCATGTATGAAT----GATGAGAGGTTGTTTATTGTCACAGTTTACCC-----TCTCCAGTAACACAACCATCTCCTTCCTGCTTAGCCTCTTGGAGACGCTGTCCCGCTAGTGGTCAAATTCTCCTGAAGAAATAAGGCAATAATGCATTCGACGTGCCta
i calJac3.chr22_GL285922_random C 0 I 120
e canFam3.chr1                   20089264 2803 - 122678785 I
e panTro4.chr19                  59948851 571 +  63644993 M

a score=6620.000000
s hg38.chr19_GL949751v2_alt        955570 5 +   1002683 GCACA
s ponAbe2.chr19                  56897690 5 +  60714840 GCGCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103372924 5 - 106955855 GCACA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60675732 5 +  64156825 GCACA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55817468 5 +  59248254 GCACA
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47628630 5 +  50890351 GCACA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e calJac3.chr22_GL285922_random     44896 120 +    138250 I
e papAnu2.chr19                  47925445 0 +  51301725 C
e panTro4.chr19                  59948851 571 +  63644993 M

a score=190398.000000
s hg38.chr19_GL949751v2_alt        955575 91 +   1002683 AGTGAAGATCAGGCAGCAGAAATGCATTCGACCTGCCACCCATCCATCAGGAGAC---TATTTACTCCACTACTGTAGGGGATACTGACAAATT
s ponAbe2.chr19                  56897695 94 +  60714840 AGTGAAGATCAGGCAGCAGAAATGCATTCGACCTGCCACCCATCCATCAGGAGACTCTTATTTACTCCACTACTGTAGGGGATACTCACAAATT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103372929 94 - 106955855 AGTGAAGATCAGGCAGCAGAAATGTATTCGACCTGCCACCCATCCGTCAGGAGACTCTTATTTACTCCACTACTGTAAGGGATACTGACAAATT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60675737 94 +  64156825 AGTGAAGAGCAGGCAGTGGAAATGCATTCGACCTGCCACCCATCGGTCAGGAGACTCTTACTTACTCCACTGCTGTAGGGGATACTGACAAATT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55817473 94 +  59248254 AGTGAAGAGCAGGCAGTGGAAATGCATTCGACCTGCCACCCATCGGTCAGCAGACTCTTACTTACTCCACTGCTGTAGGGGATACTGACAAATT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47925445 74 +  51301725 --------------------AATGCATTCGACCTGCCACCCATCGGTCAGGAGACTCTTATTTACTCCACTGCTGTAGGGGATACTGACAAATT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47628635 93 +  50890351 AGTGAAGAGCAGGCAGCAGAAATGCATTCGACCTGCCACCCATCGGTCAGGAGACTCTTA-TTACTCCACTGCTGTAGGGGATACTGACAAATT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     45016 90 +    138250 AGTGAGGAATAGGCAGCAGAAATGCATTTGACCCATCACCCATCCTTCAAGAGACTC----TTACTCCACTACTATAGGTGATACTGACAAATT
i calJac3.chr22_GL285922_random I 120 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e panTro4.chr19                  59948851 571 +  63644993 M

a score=813299.000000
s hg38.chr19_GL949751v2_alt        955666 294 +   1002683 AAATCCAT-ACCTAGTCCAGATATCA---ATTCCACAAtttttttttttttt-----------tttttgagacggagtttcgctcttgttgcccaggccagagtgcaatggtgtgatcttggctcaccgcaacctccacctcccaggttcaagcgattctcctgccttagcctccagagtagctgggattacaggcatgtgccaccacacccggctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcccgacctcagatggcccacccgcctcggcctcc
s panTro4.chr19                  59949422 292 +  63644993 AAATCCAT-ACCTAGTCCAGATATCATCAATTCCACAAtttttttttttttt----------------gagacggagttttgctcttgttgcccaggccagagtgcaatggtgtgatcttggctcaccgcaacctccgcctcccaggttcaagcgattctcctgccttagcctccagagtagctgggattacaggcatgtgccaccacgcccggctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcccaacctcagatggcccacccgcctcggcctcc
i panTro4.chr19                 M 571 C 0
s ponAbe2.chr19                  56897789 306 +  60714840 AAATCCAT-ATCTAGTCCAGATATCATCAATTCCACAAttttttttttttttttttttttttttttttgagacggaatttcgctcttattgcccaggccggagtgcaatggcgcgatctcggctcaccgcaacctccgcctcccgggttgaagcgatcctcctgcctgagcctccaaagtagctgggattacaggcctgtgccaccatgcccaactaattttgtatttttagtagagatggggtttctccatg-tggtcaggctgg-ctccaactcccgacctcaggtgacccacttgccttggcctcc
i ponAbe2.chr19                 C 0 T 4579
s nomLeu3.chr10                 103373023 295 - 106955855 AAATCCAT-ACCTAGTCCAGATATCATCAATTCCACAAtttttttttttttt-------------tttgagacagagttttgctcttgttgcccaggccagaatgcaatggtgtgatcttggctcaccacaacctctgccttctgggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcatgtaccaccacacccggctaattttgtatttgtagtagagatggggtttctccatgttggtcaggctagtctcaaactcccgacctcaggtgacccacccgcctcagcctcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60675831 304 +  64156825 AAATCCATAACCTAGTCCAGATATCATCAAGTCCACAATTtttgtttgtttg-----tttgtttttttgagatggagttttgctcttgttgcccaggccggagtgtaatggcgtgatctcggctcactgcaacctccgcctcccagattcaagcgattctcctgcctcagcctccagagtagctgggattacaggcatgcgccaccacgcccagataattttgtattttcagtagagatggggtttctccgtgttggtcaggctggtctccagctcccaacctcaggtgatccgtccgcctcggtctcc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55817567 304 +  59248254 AAATCCATAACCTAGTCCAGATATCATCAAGTCCACAAtttttgtctgtttg-----tttgtttttttgagatggagttttgctcttgttgcccaggccggagtgtaatggcgtgatctcggctcactgcaacctccgcctcccagattcaagcgattctcctgcctcagcctccagagtagctgggattacaggcatgtgccaccacgcccagataattttgtattttcagtagagatggggtttctccatgttggtcaggctggtctccaactcccaacctcaggtgatccgtccgcctcggtctcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47925519 303 +  51301725 AAATCCATAACCTAGTCCAGATATCATGAagtccactaatttt-tttttttt-----tttttttttttgaaacggagttttgctcttgttgcccaggccggagcgtaatggtgtgatctcggctcaccgcaacctccgcctcccggattcaagcaattctcctgcctcagcctccagagtagctgggattacaggcatgcaccaccacgcccagataattttgtatttgcagtagagatggggtttctccatgttggtcaggctggtctccaactcccaacctcagatgatccatccgcctcggtctcc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47628728 304 +  50890351 AAATCCATAACCTAGTCCAGATATCATCAAGTCCACAAtttttgttcgtttg-----tttgtttttttgagacggagttttgctcttgttgcccaggctggagtgtaatggtgtgatctcggctcaccgcaacctccccctcccggattcaagcgattctcctgcctcagcctccagagtagctgggattacaggcgtgcgccaccacgcccagataattttgtattttcagtagagatggggtttctccatgttggtcaggctggtctccaactcccaacctcaggtgatccgtccgcctcggtctcc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     45106 299 +    138250 CAGCCCATAACCTTGTCCTGATATCA---AGTCCACAttttttttttttttt-------tttttttttgagaccgagtttcgctcttgttgcccaggctggagtgcaatggcgcattctcagctccccacaacctccgcctcctggtttcaagtgattctcctgcctcagcctccagagtagctaggattacaggtatgtaccggcatgtctggctaactttgtatttctagtagaaacagggtttctccatgttggtcaggctggtcttgaactcccaagctcaggtaatccacccacctcaccctcc
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I

a score=44023.000000
s hg38.chr19_GL949751v2_alt        955960 41 +   1002683 caaagtgT-------------GTAAGCCATGGCACTCAGCCttttttttttttt
s panTro4.chr19                  59949714 41 +  63644993 caaagtgT-------------GTAAGCCATGGCACTCAGCCttttttttttttt
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103373318 39 - 106955855 caaagtgc-------------ATGAGCCATGGCACTCAGCtttttttttttt--
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676135 27 +  64156825 caaagtgc-------------GTGAGCCACGGCACTCAGC--------------
i rheMac3.chr19                 C 0 I 1
s macFas5.chr19                  55817871 27 +  59248254 caaagtgc-------------GTGAGCCACGGCACTCAGC--------------
i macFas5.chr19                 C 0 I 1
s papAnu2.chr19                  47925822 27 +  51301725 caaagtgc-------------gtgagccacggcactcagc--------------
i papAnu2.chr19                 C 0 I 1
s chlSab2.chr6                   47629032 27 +  50890351 caaagtgc-------------GTGAGCCACGGCACTCAGC--------------
i chlSab2.chr6                  C 0 I 1
s calJac3.chr22_GL285922_random     45405 50 +    138250 caaagtgctgggattacgggtgacagccaccacgcccggccAtttttttt----
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I
e ponAbe2.chr19                  56898095 4579 +  60714840 T

a score=818842.000000
s hg38.chr19_GL949751v2_alt        956001 288 +   1002683 ttttttttttttttgagatggaggctctctctgttgcccaggctggagtgcaat-gcctgacctcagctcactgcaacttctgcctcccagtttcaagcaattctcccacctcagcctcccacgtagctgggattacaagcacc-cgccatcacgcccggcta--------atttttgtagagatggggtttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctccc---aaggttgagattacaggcgtgagccactgtgcctggccCACA
s panTro4.chr19                  59949755 281 +  63644993 ttttttt-------gagatggaggctctctctgttgcccaggctggagtgcaat-gcctgacctcagctcactgcaacttctgcctcccagtttcaagcaattctcccacctcagcctcccgcgtagctgggattacaagcacc-cgccatcacgcccggcta--------atttttgtagagatggggtttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctccc---aaggttgagattacaggcgtgagccaccgtgcctggccCACA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56893516 286 +  60714840 ttttttttttttttgaaatggagtctttctctgttgcccaggctggagtgcaat-gcctgacctcagctcactgcaacttctgcctcccggtttcaagcaattctcccatctcagcctcc--cgtagctgggattacaggcacc-cgccatcacacccagcta--------atttttgtagagatggggtttcaccatgttgaccaggctggtcttgaagtcctgacctcaggtgatccacccacctcagcctccc---aaagttgagattacaggcatgagccaccgtgcctggccCACA
i ponAbe2.chr19                 T 4579 C 0
s nomLeu3.chr10                 103373357 284 - 106955855 ttttttttttttttgagacagag----tctctgttgcccaggctggagtgcaat-gcctaacctcagctcactgcaacttttgcctcctggtttcaagcaattctcccacctcagcctcccgcgtagctgggattacaggcacc-cgccatcatgcccggcta--------atttttgtagagatggggtttcacaatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctccc---aaagttgagattacaggcatgagccaccgtgcctggccCACA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676163 282 +  64156825 Gtttttt-------gagacggagtctctctctgttgcccaggctggagtgcaat-gcctgacctcagctcactgcaacttctgcctcccggtttcaagcaattctcccacctcagcctctcgagtagctgggattacaggcaccgccccgtcatacccggcta--------atttttgtagagacggggtttcgccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctccc---aaagttgagattacaggcatgagccaccgtgcctggccCACA
i rheMac3.chr19                 I 1 C 0
s macFas5.chr19                  55817899 282 +  59248254 Gtttttt-------gagacggagtctctctctgttgcccaggctggagtgcaat-gcctgacctcagctcactgcaacttctgcctcccggtttcaagcaattctcccacctcagcctctcgagtagctgggattacaggcacccccccgtcatgcccggcta--------atttttgtagagacggggtttcgccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctccc---aaagttcagattacaggcatgagccaccgtgcctggccCACA
i macFas5.chr19                 I 1 C 0
s papAnu2.chr19                  47925850 279 +  51301725 ttttttt-------gagacaga--ctctctctgttgcccaggctggagtgcaat-gcctgacatcagctcactgcaacttctgcctcccggtttcaagcaattctcccacctcagcctcccgagtagctgggattacaggcacc-ccccatcatgcccggcta--------atttttgtagagacggggttttgccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctccc---aaagttgagattacaggcatgagccaccgtgcctggcccaca
i papAnu2.chr19                 I 1 C 0
s chlSab2.chr6                   47629060 281 +  50890351 Gtttttt-------gagacggagtctctctctgttgcccaggctggagtgcaat-gcctgacctcagctcattgcaacttctgcctcccagtttcaagcaattctcccacctcagcctcccgagtagctgggattacaggcacc-ctccatcatgcccggcta--------atttttgtagagacggggtttcgccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctccc---aaagttgagattacaggcatgagccaccgtgcctggccCACG
i chlSab2.chr6                  I 1 C 0
s calJac3.chr22_GL285922_random     45455 298 +    138250 ttttttttttttttgagactgag--tctctctgttgtgcaggctggagtgcagtggtgtgatctcagctcactacaacttctgcttcccaggttcaagtgattcacctgcctcagcccccagagtagctgggataacaggcacc-tgctatcattcctggctaatttttgtatttttgtagagacagggtttccccatgttaaccaggctggtctcgaactcctgacctctggttatccacccacctcagcccccccaaaatgttgagattacaggcatgagccaccgtgcccggccCACA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20089264 2803 - 122678785 I

a score=7020.000000
s hg38.chr19_GL949751v2_alt        956289 4 +   1002683 TTTT
s panTro4.chr19                  59950036 4 +  63644993 TTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56893802 4 +  60714840 TTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373641 4 - 106955855 TTTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676445 4 +  64156825 GTTA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818181 4 +  59248254 Gttt
i macFas5.chr19                 C 0 I 219
s papAnu2.chr19                  47926129 4 +  51301725 gtta
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629341 4 +  50890351 GTTA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     45753 4 +    138250 TTTT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20092067 4 - 122678785 TTTT
i canFam3.chr1                  I 2803 C 0

a score=123300.000000
s hg38.chr19_GL949751v2_alt        956293 40 +   1002683 TTAAAAAAGGGGCAACTGCAGTGTAGTAGAACAAAGTTGT
s panTro4.chr19                  59950040 40 +  63644993 TTTAAAAAGGGGCAACTGCAGTGTAGTAGAACAAAGTTGT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56893806 40 +  60714840 TTTAAAAAGGGGCAATTGCAGTGTAGTAGAACAAAGTTGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373645 40 - 106955855 TTAAAAAAGGGGCAACTGCAGTGTAGCAGAACAAAGTTGT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676449 40 +  64156825 TTTAAAAAGGGGCAACTGCAGTGTCGTAGGACAAAGTTGT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818404 40 +  59248254 TTTAAaaaggggcaactgtagtgtcgtagaacaaagttgt
i macFas5.chr19                 I 219 C 0
s papAnu2.chr19                  47926133 40 +  51301725 TTTAAAAAGGGGCAACTGCAGTGTCATAGAACAAAGTTGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629345 40 +  50890351 TTTAAaaaggggcaactgcagtgtagtagaacaaagttgt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     45757 39 +    138250 TTTTAAAAGGGG-AACTGCAGTGTAGTGGAACAAAGCTGT
i calJac3.chr22_GL285922_random C 0 M 552
s canFam3.chr1                   20092071 32 - 122678785 TTAAAAAA--------CACAGTGTATAGAGACAAAGTTGT
i canFam3.chr1                  C 0 C 0

a score=48048.000000
s hg38.chr19_GL949751v2_alt        956333 20 +   1002683 GACCAATGCTAGGATA-CTCT
s panTro4.chr19                  59950080 20 +  63644993 GACCAATGCTAGGATA-CTCT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56893846 21 +  60714840 GACCGATGCTAGGATACCTCT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373685 21 - 106955855 GACCAATGCTAGGATACCTCT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676489 21 +  64156825 GACCAATgctaggacacctct
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818444 21 +  59248254 gaccaatgctaggacacctct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47926173 21 +  51301725 GACCAATGCTAGGACACCTCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629385 21 +  50890351 gaccaatgctaggatacctct
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20092103 19 - 122678785 AGCCAAAACTGGAAGACCT--
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     45796 552 +    138250 M

a score=441965.000000
s hg38.chr19_GL949751v2_alt        956353 141 +   1002683 GTTCATTTCCTGACCCAGCCATGAATACACTGGAATAACTCATGCAAA--ATGCCAGCTCGCTGGCCCCCCGTTTCCCCACCCAACAAATGAAGGGGCTCTTACAGGTTCCTTTTTGTCCTGAAATTCATCACCAATGCAAAT----------------------------------
s panTro4.chr19                  59950100 141 +  63644993 GTTCATTTCCTGACCCAGCCATGAATACACTGGAATAACTCATGCAAA--ATGCCAGCTCGCTGGCCCCCCGTTTCCCCACCCAACAAATGAAGGGGCTCTTACAGGTTCCTTTTTGTCCTGAAATTCATCACCAATGCAAAT----------------------------------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56893867 143 +  60714840 GTTCATCTCCTGACCCAGCCATGAATACACTGGAATAACTCATGCAAAACATGCCACCTCGCTGGCCCCCCATTTCCCCACCCAACAAATGAAGGGGCTCTCACAGGTTCCTTTTTGTCCTGAAATTCATCACCAATGCAAAT----------------------------------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373706 142 - 106955855 GTTCATTTCCTGACCCAGCCATGAATACACTGGAATAACTCATGCAAAACACGCCACCTCGCTAG-CCCCCGTTTCCCCACCCAACAAATGAAGGGGCTCTCACAGGTTCCTTTTTGTCCTGAAATTCATCACCAATGCAAAT----------------------------------
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676510 143 +  64156825 gttcatttcctgacccagccacgaatacactggaataactcaggcaaaatacaccacctcgctggccctccgcttccccacccaaccaatgaaggggctctcataggtccctttttgtcctgaaattcATCACCGATGCAAAT----------------------------------
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818465 143 +  59248254 gttcatttcctgacccagccacgaatacactggaataactcaggcaaaatacaccacctcgctggccctccgcttccccacccaaccaatgaaggggctctcataggtccctttttgtcctgaaattcATCACCGATGCAAAT----------------------------------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47926194 142 +  51301725 GTTCATTTCCTGACCCAGCCACGAATACGCTGGAATAACTCAGGCAAAACACACCACCTCGCTAGCCCTCCACTT-CCCACCCAACCAATGAAGGGGCTCTCATAGGTCCCTTTTTGTCCTGAAATTCATCACCGATGCAAAT----------------------------------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629406 143 +  50890351 gttcatttcctgacccagccacgaatacgctggaataactcaggcaaaatacaccacctcgctagccctccgcttccccacccaaccaatgaaggggctctcataggtccctttttgtcctgaaattcATCACCGATGCAAAT----------------------------------
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     46355 143 +    138250 GTCTATTTACTGACCCAGCCATGAATAAACTGGAATCACTCATACAAAACACTCCACTTTGCTGGCCCCTCATTTCCCCACCCAGCAAACCAAGGGGCTCTCATAGGTCCTTTTTTGTCCTGAAATTCATTACTGATACAAAt----------------------------------
i calJac3.chr22_GL285922_random M 552 I 302
s canFam3.chr1                   20092122 176 - 122678785 ATTTATTTCCTGACCTAGCCAAGAAGGGAATAGAACATAATAACAGACAAACACCACCTCCCAGG-TCCCAGTTTTCCCAACCAAGAAATGAAGGGGCCCTCAGAGGTCACCAATTGCCCTGAAATTCATTTCTGAAGAGAAACCAGAGTATTGCTGAAATTCATTTCTGATGCAAT
i canFam3.chr1                  C 0 C 0

a score=177098.000000
s hg38.chr19_GL949751v2_alt        956494 56 +   1002683 TTC-T---TAAAAATCCTTTGTCTGGCAGTCCA-TGCCTGTCCTTCAGCATTTCCCAGATC
s panTro4.chr19                  59950241 56 +  63644993 TTC-T---TAAAAATCCTTTGTCTGGCAGTCCA-TGCCTGTCCTTCAGCATTTCCCAGATC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894010 56 +  60714840 TTC-T---TAAAAATCCTTTGCCTGGCAGTCCA-TGCCTGTCCTTCAGCATTTCCCAGATC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373848 56 - 106955855 TTC-T---TAAAAATCCTTTGTCTGGCAGTCCA-TGCCTGCCCTTCAGCATTTCCCAGATC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676653 57 +  64156825 TTCTT---AAAAAATCCTTTGTCTGGCAGTCCA-GGCCTGTCTTTCAGCACTTCCCAGATC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818608 57 +  59248254 TTCTT---AAAAAATCCTTTGTCTGGCAGTCTA-GGCTTGTCTTTCAGCACTTCCCAGATC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47926336 56 +  51301725 TTC-T---AAAAAATCCTTTGTCTGGCAGTCCA-GGCCTGTCTTTCAGCACTTCCCAGATC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629549 57 +  50890351 TTCTT---AAAAAATCCTTTGTCTGGCAGTCCA-GGCCTGTCTTTCAGCACTTCCCAGATC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     46800 56 +    138250 TTC-TTAAAAAAAATCCTTTGGCTGGCAGTCCA-TGCCTGCCCATCAG---TTCCCAGATC
i calJac3.chr22_GL285922_random I 302 C 0
s canFam3.chr1                   20092298 57 - 122678785 TTT-T---TAAACATTCTTAGTCTCATAGCCTACTGCCTGTCCCTCAGCATTTCCCAGATC
i canFam3.chr1                  C 0 I 349

a score=1560.000000
s hg38.chr19_GL949751v2_alt        956550 2 +   1002683 TG
s panTro4.chr19                  59950297 1 +  63644993 -G
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894066 1 +  60714840 -G
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373904 1 - 106955855 -G
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676710 1 +  64156825 -G
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818665 1 +  59248254 -G
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47926392 1 +  51301725 -G
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629606 1 +  50890351 -G
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     46856 1 +    138250 -C
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20092355 349 - 122678785 I

a score=1079094.000000
s hg38.chr19_GL949751v2_alt        956552 303 +   1002683 ACCCTCAGGACTCACCAAGACAGAAGAGGGCGGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGAGCTCTGTGGCCAGGG-AGGGAAGTGGTGGGAGCCTGGGGCACAGGCTCAGGATGTGATGAGGATGAAGAATGCTCTCCTCCCTTCCTCCACCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCGGCTCCTCAGTACAGTGACTTGCACACAAGCTCCAAGGAGCCGCGCTTATCTCCTCTGGCCAGCCTGGCGTTGCACCGTTTGTCCGCCTGCTGGGGCCTGG
s panTro4.chr19                  59950298 303 +  63644993 ACCCTCAGGACTCACCAAGACAGAAGAGGGCGGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGAGCTCTGTGGCCAGGG-AGGGAAGTGGTGGGAGCCTGGGGCACAGGCTCAGGATGTGATGAGGATGAAGAATGCTCTCCTCCCTTCCTCCACCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCGGCTCCTCAGTACAGTGACTTGCACACAAGCTCCAAGGAGCCACGCTTATCTCCTCTGGCCAGCCTGGCGTTGCACCGTTTGTCCGCCTGCTGGGGCCTGG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894067 303 +  60714840 ACCCTCAGGACTCACCAAGACAGAAGAGGGCGGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGAGCTCTGTGGCCAGGG-AGGGAAGTGGTAGGAGCCTGGGGCACAGGCTCAGGATGTGATGAGGATGAAGAATGCTCTCCTCCCTTCCTCCGCCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCGGCTCCTCAGTACAGTGACTTGCACACAAGCTCCAAGGAGCCACACTTATCTCCTCTGGCCAGCCTGGCATTGTACCGTTCGTCCGCCTGCTGGGGCCTGG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103373905 299 - 106955855 ACCCTCAGGACTCACCAAGACAGAGGAGGGCAGTCGGGGATGGAGACATGGTTCCTCAGC-----CCTGAGCTCTGTGGCCAGGGAAGGGAAGTGGTGGCAGCCTGGGGCACAGGCTCAGGATGTGATGAGGGTGAAGAATGCTCTCCTCCCTTCCCCCGCCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTCGCCGGCTCCTCAGTACAGTGACTTGCACACAAGCTCCAAGGAGCTGCGCTTATCTCCTCTGGCCAGCCTGGGGTTGTACCGTTCGTCCGCCTGCTGGGGCCTGG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60676711 302 +  64156825 ACCCTCAGGACTCACCGAGACAGAAGAGGGTGGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGGGTTCTGTGGCCCGGG-AGGGAAGTGGTGGGAGCCT-GGGCACGGGCTCAGGATGTGATGAGGATGAAGAATGCTCTCCTCCCTTCCTCCGCCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCGGCTCCCCAGGACAGTGACTTGCACACAAGCTCCAAGGAGCTGCGCTTATCTCCTCTGGCCAGCCTGGCGTTGCACCGTTCGTCCGCCTGCTGGGGCCTGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818666 302 +  59248254 ACCCTCAGGACTCACCGAGACAGAAGAGGGTGGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGGGTTCTGTGGCCCGGG-AGGGAAGTGGTGGGAGCCT-GGGCACGGGCTCAGGATGTGATGAGGATGAAGAATGCTCTCCTCCCTTCCTCCGCCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCGGCTCCCCAGGACAGTGACTTGCACACAAGCTCCAAGGAGCCGCGCTTATCTCCTCTGGCCAGCCTGGCGTTGCACCGTTCGTCCGCCTGCTGGGGCCTGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47926393 303 +  51301725 ACCCTCAGGACTCACCAAGACAGAAGAGGGCAGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGAGCTCTGTGGCCAGGG-AGGGAAGTGGGGGGAGCCTGGGGCACGGGCTCAGGATGTGATGAGGTTGAAGAatgctctcctcccttcctccgcCAGCCCCGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCAGCTCCCCAGGACAGTGACTTGCACACAAGCTCCAAGGAGCCGCGCTTATCTCCTCTGGCCAGCCTGGCGTTGCACCGTTCGTCTGCCTGCTGGGGCCTGG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629607 302 +  50890351 ACCCTCAGGACTCACCAAGACAGAAGAGGGCGGTCGGGGATGGAGACATGGTTCCTCAGCCCTGTCCTGAGCTCTGTGGCCAGGG-AGGGAAGTGGTGGGAGCCT-GGGCATGGGCTCAGGATGTGATGAGGATGAAGAATGCTCTCCTCCCTTCCTCCGCCAGCCCTGGCCTTTCCTAATTGAGACTCATCGAGCCGTAGCCAGCTCCCCAGGACAGTGACTTGCACACAAGCTCCAAGGAGCCGCGCTTATCTCCTCTGGCCAGCCTGGCGTTGCACCATTCGTTCGCCTGCTGGGGCCTGG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     46857 303 +    138250 ACCCTCAGGACTCACCAAGACAGAAGAGGGCGGTCAGGGATGGAGACATGGTTCCTCGGCCCTGTCCTGAGCTCTGTGGCCAGGG-AGGGAAGTGGTGGGAGTCGGGGGCACAGGCTCAGGATGTGATGAGGATGAAGAATGCCCTCCTCCCTTCCTTCACCAGCCCCGGCCTTTCCTAATTGAGGCTCATCGAGCTGTAGCCGGCTCCTCAGTACTGTGACTTGCACACAAGCTCCAAGGAGGCTCGCTTATCTCCACCGGCCAGCCTGGCTCTGCACCACTCGTCTGCCCACTGGGGCCTGG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20092704 297 - 122678785 ATCCTCAGTACTCACCAAGACACAGAAGGGCAGGCAGGGATGGGGCCATGGTTCTTCAGCCC-ATCCAAAGCTCTGTAACCCAGG-AGGGAAGCTGCAGGGGCTG-GAGCAGAGACATCGGATGTGATGAGGATGCAGAGCCCTCTCCTCCCTTCCTGGATCTG-CCTGGCTTTTCCTAAGTGAGGATCATCAAGCTGGAGCCATGCCCTCAGTAGAGTGACTTGCACACAAGTTCACAGAAGCT-CATTTATCTTCTGTCACCAGCCTAGAGCCACACCAT--GTCTGCATCTTCAGGCATGG
i canFam3.chr1                  I 349 I 34018

a score=252942.000000
s hg38.chr19_GL949751v2_alt        956855 85 +   1002683 TCTGTGTTCCCGTGCTCCCATAAACTCCCTGAT-Gtcactaggaaaatacgcatcaaaaccacagtgagatatgacttcacacctt
s panTro4.chr19                  59950601 85 +  63644993 TCTGTGTTCCCGTGCTCCCATAAACTCCCTGAT-Gtcactaggaaaatacgcatgaaaaccacagtgagatatgacttcacacctt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894370 85 +  60714840 TCTGTGTTCCCGTGCTCCCATAAACtccctaat-gtcactaggaaaatacgcatcaaaaccacagtgagatatgacctcacacctt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103374204 85 - 106955855 TCTGTGTTCCCGTGCTCCCATAAACTCCCTGAT-Gtcactaggaaaatacgcatcaaaaccacagtgagatatgacttcacacctt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677013 85 +  64156825 CCTGTGTTCCCGTGCTCCCATAAACTCCCTGAT-Gtcgctaggaaaatactcatcaaaaccacagtgagatacgacttcacaactt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55818968 85 +  59248254 CCTGTGTTCCCGTGCTCCCATAAACtccctgat-gtcgctaggaaaatactcatcaaaaccacagtgagatatgacttcacaactt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47926696 85 +  51301725 CCTGTGTTCCCGTGCTCCCATAAACTCCCTGAT-GTCGCTAGGAAAATActcatcaaaaccacagtgagatatgaCTTCACAACTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629909 85 +  50890351 CCTGTGTTCCCGTGCTCCCATAAACTCCCTGAT-Gtcgctaggaaaatactcatcaaaaccacagtgagatacgacttcacagctt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     47160 86 +    138250 GCTGTCCTCCCATGTTCCCATAAAGTCTCTGAtggtcgctaggaaaatgtacatcagaaccacagtgagatacgatttcacacttt
i calJac3.chr22_GL285922_random C 0 I 1752
e canFam3.chr1                   20093001 34018 - 122678785 I

a score=395549.000000
s hg38.chr19_GL949751v2_alt        956940 185 +   1002683 ctggaatggctgt-at-ttttttttttt-cttttgagacaaagtctcgttctttttgcccaggttggagtgcagtggcgccatctcggcccactacaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtggctgggattataggtatg---t---accacaccaggctaatttttgt
s panTro4.chr19                  59950686 186 +  63644993 ctggaatggctgt-at-ttttttttttttcttttgagacaaagtctcgctctttttgcccaggctggagtgcagtggcgccatctcggcccactacaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtggctgggattataggtatg---t---accacaccaggctaatttttgt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894455 190 +  60714840 ctgggatggctgtaat-tttttttttttttttttgagacaaagtctcactctttttgcccaggctggagtgcagtggcgccatcttggctcactacaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtggctgggattataggtatg---taccaccacgccgggctaatttttgt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103374289 187 - 106955855 ctgggatggctgt-aa-ttttttttttttcttttgagac--agtctcgctctttttgcccaggctggagtgcagtggtggtatctcagctcactacaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtggctgggattataggtatg---taccaccatgccgggctaatttttgt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677098 182 +  64156825 ctgggatggctat-aa--------tttttttttccagacagagtctcgctctttttgcccaggctggagtgcagtggcgccatctcggcccactacaacctccacctcctgggttcaagtgattctccggcctcagcctcccgagtggctggggttataggtgtg---caccaccacgctgggctaatttttgt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55819053 189 +  59248254 ctgggatggctat-aa-ttttttttttttttttccagacagagtctcgctctttttgcccaggctggagtgcagtggcgccatctcggcccactacaacctccacctcctgggttcaagtgattctccggcctcagcctcccaagtggctggggttataggtgtg---caccaccacgctgggctaatttttgt
i macFas5.chr19                 C 0 I 1042
s papAnu2.chr19                  47926781 189 +  51301725 CTgggatggctat-aa----tttttttttttttccagacagagtctcgctctttttgcccaggctggagtgcagtggcgccatctcggcccactacaacctccacctcctgggttcaagtgattctgcagcctcagcctcccaaatggctggggttataggtatgtaccaccaccacgccgggctaatttttgt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47629994 179 +  50890351 ctgggatggctat-aatttttttttttttttttccagaaagagtctcgctcttcttgcccaggctggagtgcagtggcgccatctcggcccactacaacctccacctcctgggttcaagtgattctgcagcctcagcctcccaaatggctggggttataggtgtg---caccaccaca------taact-----
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I

a score=102285.000000
s hg38.chr19_GL949751v2_alt        957125 61 +   1002683 atttttagtagagatggggtttcactgtgttggccaggctggtcttgaactcctgacctca
s panTro4.chr19                  59950872 61 +  63644993 atttttagtagagatggggtttcactgtgttggccaggctggtcttgaactcctgacctca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56894645 61 +  60714840 atttttactaaagatggggtttcactatgttgcccaggctgatcttgaactcctgacctca
i ponAbe2.chr19                 C 0 I 4561
s nomLeu3.chr10                 103374476 61 - 106955855 atttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677280 61 +  64156825 atttttagtatagatggggtttcaccacattggccaggctggtcttgaactccgcacttca
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47926970 61 +  51301725 atttttagtagagatggggtttcaccacattggccaggctggtcttgaactccgaacttca
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47630173 61 +  50890351 atttttagtagagatggagtatcaccacattggccaggctggtcttgaactccgaacttca
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e macFas5.chr19                  55819242 1042 +  59248254 I

a score=571041.000000
s hg38.chr19_GL949751v2_alt        957186 464 +   1002683 gttgatccacctgcctcggtctcccaaagtgctgggattacaggcatgagccactgcacccgaccggctataa--ttttttttaatggaaaacagcagatattggtgagtatgcagagaaattgaactgcgcgtgcattgctggcagggacgtaacatggcgcccctgctgtggaaaacagttccagcagctcctccagaagttaaacgtgggattgccataaaatccagcaattccacttcggggtacacacctaaaagaactgaaaacagggtctctaac--atatttgtaca-cagtgttcatagcagctttattcacaatagccaaaaggtgaaaccacccacatgtccatcaacaacaatggataaacaacatgtggtatatacacacaaggtaatatcaaccagccttaactaaaagaataaaaatcagccaggcacagtggctcacgcctgtaatcccagca
s panTro4.chr19                  59950933 464 +  63644993 gttgatccacctgccttggtctcccaaagtgctgggattacaggcatgagccactgcacccgaccggctataa--ttttttttaatgtaaaatagcagatattggtgagtatgcagagaaattggactgcgcgtgcattgctggcagggacgtaacatggcgcccctgctgtggaaaacagttccagcagctcctccagaagttaaacgtgggattgccataaaatccagcaattccacttcggggtacacacctaaaagaactgaaaacagggtctctaac--atatttgtaca-cagtgttcatagcagctttattcacaatagccaaaaggtgaaaccacccacatgtccatcaacaacaatggataaacaacatgtggtatatacacacaaggtaatatcaaccagccttaactaaaagaataaaaatcagccaggcacagtggctcacgcctgtaatcccagca
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103374537 464 - 106955855 gttgatccgcctgcctcggcctcccacagtgctgggattataggcataagccaccgcacccgaccggctgtaa--ttttttttaatggaaaatagcaaatattggtgagtatgcagagaaattggaccgcgcgtgcattgctggcagggacgtaacatggtgcccctgctgtggaaaacagttttagcagctcctccaaaaggcaaacatggaattgccataaaatccagcaattccacttctgggtatacacctaaaagaattgaaaacagggtctctaacagatatttgtacaccagcgttcataacagctttattcacaatagccaaaaggtgaaaccaaccaaatgtccat---caacaatggataaacaacatgcagtatatacacacaaggtaatatcaaccagccttaactaaaagaataaaaatcagccaggcacagtggctcacacctgtaatcccagca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677341 465 +  64156825 ggtgatccgcccacattggcctcccagagggctggtattacaggcatgagccactgcgcccgaccagctataa--ttttttttaatggaaaacagcaaacgttggtgagtatgcagagaagttggactgcgcgtgccttgctggtggggacataacatggtgccactgctgtggaaaacagttttagcagctcctccaaaagttaaacgtgggattgccgtaaaatccagcaattccacttctgcgtatacacctaaaagaatcgaaaacaggatctcgaac--atatttgtacaccagtgttcctagcagctttattcacaatagccaagaggtgaaaccagccaaatattcatcaacaacaatggataaacaacgtgcggtatatacagacaaggtaacatcaaccaaccttcattaaaagaataaaaatcAgccgggcgcggtggctcacgcctgtaatcccagca
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47927031 466 +  51301725 ggtgatctgcccacatcagcctcccaaaaggctgggattacaggcatgagccactgcgcccgaccagctataa-tttttttttaatggaaaatagcAAACGTTGGTGAGTATGCAGAGAAGTTGGACTGCGCGTGCCTTGCTGGCGGGGACATAACATGGTGccactgctgtggaaaacagttttagcagCTCCTCCAAAAGTTAAACGTGGGATTGCCGTAaaatctagcaattccacttctgggtatacacctaaaagaattgaaaacaggatctCGAAC--ATATTTGTACAccagtgttcatagcagctttattcacaatagccaagaggtgaaaccagccaaatatccatcaacaacAATGGATAAACAACATGTGGTATATACAGACAAGGTAATATCAACCAGCcttcattaaaagaataaaaatcagccaggcgcggtggctcacgcctgtaatcccagca
i papAnu2.chr19                 C 0 I 140
s chlSab2.chr6                   47630234 466 +  50890351 ggtgatctgcccacatcggcctcccaaagggctgggattacaggcatgagccactgcgcccgaccagctataattttttttttaatggaaaatagcaaacgttggtgagtatgcagagaagttggactgcgcgtgcattgctggcggggacataacatggtgccactgctgtggaaaacagttttagcagctcctccaaaagttaaacgtgggattgccataaaatccagcagttccacttctgggtatacacctaaaagaattgaaaacaggatctcgaac--atatttgtacaccagtgttcatagcagctttattcacaatagccaagaggtgaaaccagccaaata-ccatcaacaacaatggataaacaacatgcggtacatacagacaaggtaatatcaaccagccttcattaaaagaataaaaATCAgccgggcgcggtggctcacgcctgtaatcccagca
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56894706 4561 +  60714840 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e macFas5.chr19                  55819242 1042 +  59248254 I

a score=72901.000000
s hg38.chr19_GL949751v2_alt        957650 83 +   1002683 ctttgggaggccgaggcgggcggatcacctgaggtcaggagtccgagaccagcctggttaacatggtgaaaccccatctctac
s panTro4.chr19                  59951397 83 +  63644993 ctttgggaggccgaggcgggtggatcacctgaggtcaggagtccgagaccagcctggttaacatggtgaaaccccatctctac
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103375001 83 - 106955855 ctatgggaggccgaggcgtgtggatcacctgaggtcaggagttcgagaccagcctggttaacatggtgaaaccccgtctctac
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677806 83 +  64156825 ctttgggaggctgaggcgggtggatcacttgagatcaggagttcgagaccagcctggttaacatggtgaaaccccatctctac
i rheMac3.chr19                 C 0 C 0
s chlSab2.chr6                   47630700 83 +  50890351 ctttgggaggctgaggcgggtggatcacttcaggtcaggagtttgagaccagcctggttaacatggtgaaaccccatctctac
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56894706 4561 +  60714840 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e papAnu2.chr19                  47927497 140 +  51301725 I
e macFas5.chr19                  55819242 1042 +  59248254 I

a score=114397.000000
s hg38.chr19_GL949751v2_alt        957733 90 +   1002683 taaaaatacaaaaa-ttagctgggcgttaaattagccgggcatggtggcaggtgcctgtaatcccagctacttgggagacggaggcatgag
s panTro4.chr19                  59951480 90 +  63644993 taaaaatacaaaaa-ttagctgggcgttaaattagctgggtatggtggcgcacacctgtaatcccagctacttgggagacggaggcatgag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56899267 91 +  60714840 TAAAAATACAAAAATTTAGCTGGGCGTTaaattagccaggcatggtggcgcacacctgtaatcccagctacttgggagacggaggcatgag
i ponAbe2.chr19                 I 4561 C 0
s nomLeu3.chr10                 103375084 90 - 106955855 taaaaatacaaaaa-ttagctgggcgttaagttagctgggcatggtggcgcgcgcctgtaatcccagctacttgggagacagaggcatgag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677889 90 +  64156825 taaaaatacaaaag-ctagctgggtgttaaattagccgggcatggtggcacacacctgtaatcccagctacttgggagatggaggcatgag
i rheMac3.chr19                 C 0 I 2
s chlSab2.chr6                   47630783 90 +  50890351 taaaaatacaaaaa-ttagctgggcattaaattagccgggcatggtggcacacgcctgtaatcccagctacttgggagatggaggcatgag
i chlSab2.chr6                  C 0 I 2
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e papAnu2.chr19                  47927497 140 +  51301725 I
e macFas5.chr19                  55819242 1042 +  59248254 I

a score=114386.000000
s hg38.chr19_GL949751v2_alt        957823 211 +   1002683 aatcgcttgaacctgggaggcagagattgcggtaagccgagatcgcaccactgcactccagcctgggcggcagagtgagactgtctcaaaaataaaaataaggccgggcgtggtggcccatgcctgtaatcctagtactttaggaggctgaggcaggcagattgcctgagctcagcagttcaagaccagcctgggcaacacagtaaaaccc
s panTro4.chr19                  59951570 211 +  63644993 aatcgcttgaacctgggaggcggagattgcggtaagccgagatcgcaccactgcactccagcctgggcggcagagtgagactgtctcaaaaataaaaataaggccgggcgtggtggcccatgcctgtaatcctagtactttgggaggctgaggcaggcagattgcctgagctcaggagttcaagaccagcctgggcaacacagtaaaaccc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56899358 211 +  60714840 aatcgcttgaacctgggaggcggaaatcgcggtaagccgagatcgcaccactgcactccagcctgggcgacagagtgagactgtctcaaaaataaaaataaggccgggcgcggtggctcatgcctgtaatcctagtactttgggaggccgaggcaggcagattgcctgagctcaggagttcaagaccagcctgagcaacacggtaaaaccc
i ponAbe2.chr19                 C 0 I 10
s nomLeu3.chr10                 103375174 211 - 106955855 aatcgcttgaacctgggaggcggagattgcggtaagccgagatcgcaccactgcactccagcctgggcgacagagtgagactctctcaaaaataaaaataaggctgggcgcggtggctcatgcctgtaatcctagtactttgggaggccgaggcaggcagattgcctgagctcaggagttcaagcccagcctaggcaacacggtaaaaccc
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e chlSab2.chr6                   47630873   2 +  50890351 I
e papAnu2.chr19                  47927497 140 +  51301725 I
e macFas5.chr19                  55819242 1042 +  59248254 I
e rheMac3.chr19                  60677979   2 +  64156825 I

a score=-1192.000000
s hg38.chr19_GL949751v2_alt        958034 4 +   1002683 -----ccaa
s panTro4.chr19                  59951781 4 +  63644993 -----aaaa
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103375385 8 - 106955855 cgtctcta-
i nomLeu3.chr10                 C 0 I 2
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56899569 10 +  60714840 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e chlSab2.chr6                   47630873 2 +  50890351 I
e papAnu2.chr19                  47927497 140 +  51301725 I
e macFas5.chr19                  55819242 1042 +  59248254 I
e rheMac3.chr19                  60677979 2 +  64156825 I

a score=300726.000000
s hg38.chr19_GL949751v2_alt        958038 607 +   1002683 aaaatacaaaaaaaaaa---tagccgggcatggcggcaggcacctgtagtcccagctactccggaggctgagacaggagaatggcttgaacccgggacgcggaagttgcggtgagccgagatcgcgccattgcactccagcctgggtgacagagcgagattctgtctccaa---------aaaataaaaaatattataaaagaat-aaattcagatacatgctacaacgtgatggaccttgaagacattatgctaaaggaaatattccggacttgacagataaatactgcattgtgccgcttatctgaggtatcgagaggagtcaaattcatagagacagggattagaatggtggttgccaaggcctgggaaaagtggggagttactatttaatagggagcgcttaggttgaagatgatgacaaagtctgggggatccatagtgg-tgatggttacacaacactgtaaatgtatttatatttaatgccattgactgttttttgttttttggttttttgagacggagtctcactctgtcgccgaggctggagtgcagtggcgcgatcttggctcaccgcaacctccgcctcccaggttcaagcgattctcctgcctcagcct
s panTro4.chr19                  59951785 611 +  63644993 aaaatacaaaaaaaaaaaaatagccgggcatggcggcaggcacctgtagtcccagctactccggaggctgagacaggagaatggcttgaacccgggacgcggaagttgcggtgagccgagatcgtgccattgcactccagcctgggtgacagagcgagattctgtctccaa---------aaaataaaaaatattataaaagaat-aaattcagatacatgctacaacgtgatggaccttgaagacattatgctaaaggaaatattccggacttgacagataaatactgcattgtgccgcttatctgaggtatcgagaggagtcaaattcatagagacagggattagaatggtggttgccaaggcctgggaaaagtggggagttactatttaatagggagagcttaggttgaagatgatgagaaagtctggggtatccatagtgggtgatggttacacaacactgtaaatgtatttatatttaatgccattgactgttttttgtttttttgttttttgagacggagtctcgctctgtcgccgaggctggagtgcagtggcgcgatctcggctcaccgcaacctccgcctcccaggttccagcgattctcctgcctcagcct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56899579 605 +  60714840 gaaatacaaaaaaaa-----tagccgggcatggtggcaggcacctgtagt-ccagctactccggaggctgagacaggagaatggcttgaacccgggaggcagaagttgcagtgagccgagatcgtgccattgcactccagcctgggtgacagagcaagattctgtctccaaaaataaaataaaataaaaaatattataaaagaataaaattcagatacatgctacaacgtaatggaccttgaagacattatgctaaaggaaatattccagacttgatggataaatactgcattgttccacttatctgaggtatcgagaggagtcaaattcataaagacagggattagaatggtggtgg-caaggcctgggaaaagtggggagttgctatttaatagggagagcttaggttgaaggtgatgagaaagtctggggtatccacagtgg-tgatggttacacaacactgtaaatgtatttatatttaatgccattgactgtttttt--------gttttttgagacagagtctcactccgtcgccgaggctggagtgcagtggcgcgatcttggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcat
i ponAbe2.chr19                 I 10 C 0
s nomLeu3.chr10                 103375395 603 - 106955855 gaaatacaaaaaaaa-----tagccgggcatggcggcaggcacctgtagtcccagctactccggaggctgagacaggagaatggcttgaacccgcgaggcggaagttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagctagattctgtctccaa-----aaataaaataaaaaatattataaaagaataaaattcagatacgtgctacaacatgatggaccttgaagacattacgctaaaggaaataatccagatttgacggataaatactgcattgttccacttatttgcggtatcgagaggagtcaaactcatagagacagggattagcatggtggttgccagggtctgggaaaagtggggcgttactatttaatagggggagcttaggttgaagatgatgat-aagtctgaggtatccatagtgg-tgatggttacacagcactgtaaatatatttatatctaatgccattgactgttttttgtt------ttttttgagacggagtctcgctctgtcgccgaggctggagtgcagtggcgtgatcttggctcaccacaacctccgcctcccaggttcaagcgattctcctgtctcagcat
i nomLeu3.chr10                 I 2 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e chlSab2.chr6                   47630873   2 +  50890351 I
e papAnu2.chr19                  47927497 140 +  51301725 I
e macFas5.chr19                  55819242 1042 +  59248254 I
e rheMac3.chr19                  60677979   2 +  64156825 I

a score=1745086.000000
s hg38.chr19_GL949751v2_alt        958645 766 +   1002683 cctgagtagctgggactacaggtgcgtgccaccatgcctagttgattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatct--cctgaccttgtgatttggcctcccaaagtgctgggaatacaggcatgagccaccgcgcccggccagtgccgttgacttgtatgtgcacttacaggtggttaaaatgagaactatcagggtgttgatatct-AAAAACCTCCCTGCCATCATCTTCCCTACATCTC----TCATTCAGTGACCATGGTTGAATGCCTGCCACCTTTCAAATATTATGTCAGGCACTCAGTATTGGCAGTTTTATCCATTATaaatgctttaagctgcatagaattttaaacgtgttaataaaagtagttataaatctttaatacataagctggctttaaaattattggtaaaataagattagaaatgtcttaagaattgttggcgtttttgtttgcacttattgaacgagtggtttcatgcttatccctgcagaatactatgagatttgtcataagggttataaaactataaacccggctgggcgtggtggctcacgcctgtaatcccaacactctgggaggccgaggcaggcagatc-acctgaggtcgggagtttgagaccagcctgaccaacatggagaaacgccatctctactaaaaatacaaaattagctgggtgtggtggcgcatgcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttga
s panTro4.chr19                  59952396 764 +  63644993 cctgagtagctgggactacaggtgcgcgccaccatgcctagttgattttttgtatttttagtacagacggggtttcatcgtgttagccaggatggtctcgatct--gctaaccttgtgatttggcctcccaaagtgctgggaatacaggcatgagccaccgcgcccggccagtgccgttgacttgtatgtgcacttacaggtggttaaaatgAGGACTATCAGGGTGTTGATATCT-AAAAACCTCCCTGCCATCATCTTCCCTACATCTC----TCATTCAGTGGCCATGGTTGAATGCCTGCCACCTTTCAGATATTATGTCAGGCACTCAGTATTGGCAGTTTTATCCATTATAAATGCTTTAAGCTGCATAGAATTTTAAACGC--TAATAACAGTGGTTATaaatctttaatacataagctggctttaaaattattggtaaaataagattagaaatgtcttaagaattgttggcgtttttgtttgcacttattgaacaagtggtttcatgcttatccctgcagaatactatgagatttgtcataagggttataaaactataaacccggctgggcgtggtggctcacgcctgtaatcccaacactctgggaggccgaggcaggcagatc-acctgaggtcgggagtttgagaccagcctgaccaacatggagaaacgccatctctactaaaaatacaaaattagctgggtgtggtggcacatgcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56900184 763 +  60714840 cctgagtagctgggactacaggtgcgtgccaccatggctagttaattttttgtatttttagtagagacaggatttcaccgtgttacccaggattgtcttgatct--cctgaccttgtaatttggcctcccgaagtgctgggaatacaggcgtgagccaccgtgcctggccaatgccattgacttgtatgtgcacttacaagtagttaaaattataaatATCAGAGTGTTGATATCT-AAAAACCTCCCTGCCATCATCTTCCCTACATCTC----TAGTTCAGT-ACCATGGTTGGATGCCTGCCACCTTTCAAATATTATGTCAGGCACTCAGTATCAGCAGTTTTATCAATTAAAAATGCTTTAAGCTGCATAGaattttaaacgt--taataacagtggttataaatctttaatacataagctggctttaaaattattggtaaaataagattagaaatgtcttaagaattgttggtgtttttgtttgcatgtattgaacaagtggtttcatgcttatccctgcagaataccatgagatttgccataagggttataaaactataaaccTggctgggcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggcaggtggatc-atctgaggttgggagttcgagaccagcctgaccaacatggagaaacgctgtctctactaaaaatacaaaattagttgggcgtggtggcgcatgcctgtaatcccagatactcaggaggctgaggcaggagaatcgcttga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103375998 761 - 106955855 cctgagtagctgggactacaagtgcgtgccaccatgctgagttgattttttgtatttttagtaaagatggggtttcaccgtgttagccaggatggtctcgatct--cctgaccttgtgatttggcctcccaaagtgctgggaatacaggcatgagccaccgcgcccggccaatgccattgacttgtatgtgcacttacaagtggttaaaatgataaat---AGGGTGTTGATATCT-AAAAACCTCCCTGCCATCATCTCCCCTACATCTC----TAATTCAGTGACCATGGCTGAATGCCTGCCACCTTTCAAATGTTATGTCAGGCGCTCAGTATCGGCAGTTTTATCAATTATAAATGCTTCAAGCTGCATAGAACTTTAAACGT--TAATAACAGTGGTTATaaatctttaatacataagctggctttaaaattattggtaaaataagattagaaatgtcttaagaatcgttggcatttttgtttgcatttattgcacaagtggtttcatgcttatccctgcagaatactatgagattggtcataagggttagaaaactataaaccTggcttggcgcagtggctcatgcctgtaatcccaacactttgggaggccgaggcaggtggatc-acctgagatcgagagttcgaggccagcctgaccaacagggagaaacgccgtctctactaaaaatacaaaatcagctgggcgtggtggcgcatgcctataattccagatactcaggaggctgaggcaggagaatcgcttga
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60677981 769 +  64156825 cctgagtagctgggactacaggctcccgccaccatgcctggctaattttttgtatttttagtagagacggggtttcaccgcattaggtaggatggtctcgatctaccctgaccttgtgattcggcctcccaaagtgctgggattacaggcgtgagccaccgcacctggccaatgccattgactcgtatgtgcacttccaagtggttaaaatgataaatatcagggtgtttatatctAAAAACCCTCCCTGACATCATCTTCTCTACGTCTCCGATTAACTCAGCGACCGTGGCTGAATGCCTGCCACCTTTCAAATGTTAGGTCAGGTACTCAGTATCGGCAGTTTTATCAATTATAAATGCTTTAAGCTGCATAGaattttaaac-----aataacagtggttataaatctttaatacaaaagctggctttaaaattattggtaaaataagattagaaatgtcttaagaattgttagcgtttctgtttgcatttattgaacaagtggttttgtgcttatccctgcagaatactatgagatttgccacaagggttataaaactataaactcggccgggcacagtggcttacgcctgtaatcccaacactttgggaggctgaggcgggtggatcaacctgaggttgggagttcgagaccagcctgaccaacatggaaaaatcccatctctaccaaaaatgcaaaattcgccgggcatggtagcgcgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttga
i rheMac3.chr19                 I 2 M 160
s macFas5.chr19                  55820284 771 +  59248254 cctgagtagctgggactacaggctcccgccaccatgcctggctaattttttgtatttttagtagagacggggtttcaccacattaggtaggatggtctcgatctaccctgaccttgtgattcggcctcccaaagtgctgggattacaggcgtgagccaccgcacctggccaatgccattgactcgtatgtgcacttccaagtggttaaaatgataaatatcagggtgtttatatctAAAAACCCTCCCTGACATCATCTTCTCTACGTCTCCGATTAACTCAGCGACCGTGGCTGAATGCCTGCCACCTTTCAAATATTAGGTCAGGTACTCAGCATCAGCAGTTTTATCAATTATAAATGCTTTAAGCTGCATAGAATTTAAAACGT--TAGTAACAGTGGCTATaaatctttaatacaaaagctggctttaaaattattggtaaaataagattagaaatgtcttaagaattgttagcgtttctgtttgcatttattgaacaaatggttttgtgcttatccctgcagaatactatgagatttgccataagggttataaaactctaaaGTCGAGcgggcacggtggcgtacgcctgtaatcccaacactttgggaggccgaggcaggcggatc-atctgaggttgggagttcgagaccagcctgaccaacatggagaaatcccatctctaccaaaaatgcaaaattagccgggcgtggtggtgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttga
i macFas5.chr19                 I 1042 C 0
s papAnu2.chr19                  47927637 770 +  51301725 cctgagtagctgggactacaggctcccgccaccatgcctggctagttttttgtatttttagtagagatggggtttcaccgtgttaggtaggatggtctcgatctaccctgaccttgtgattcggcctcccaaagtgctgggattacaggtgtgagccaccgcacctggccaatgcCATTGACTCGTATGTGCACTTCCaagtggttaaaatgataaatatcagGGTGTTTATATCT-AAAACCCTCCCTGACATCATCTTCTCTACATCTCCGATTAACTCAGCGACCGTGGCTGAATGCCTGCCACCTTTCAAATATTAGGTCAGGCACTCGGTATCGGCAGTTTTATCAATTATAAATGCTTTAAGCTGCATAGAATTTTAAACGT--TAATAATAGTGGTTATAAATCTTCAATACAAAAGCtgactttaaaattattggtaaaataagattagaaatgtcttaagaattgttAGCGTTTCTGTTTGCATTTATTGAACAAGTGGTTTTGTGCTTATCCCTGCAGAATACTATGAGATTTGCCATAAgggttataaaactataaactcagccgggcacagtggctcacgcctgtaatcccaacgctttgggaggctgaggtgggcggatc-acctgaggttgggagttcgagaccagcctgactaacatggagaaatcccatctctaccaaaaatgcaaaattagctgggcatggtggcgcgtgactgtaatcccagctactcaggaggctgaggcaggagaatcgcttga
i papAnu2.chr19                 I 140 C 0
s chlSab2.chr6                   47630875 770 +  50890351 cctgagtagctgggactacaggctcccgccaccatgcctggctaattttttgtatttttagtagagatggggtttcaccgtgttaggtaggatggtctcgatctaccctgaccttgtgattcggcctcccaaagtgctgggattacaggcgtgagccaccgcacctggccAATGCCATTGACTCGTATGTGCACTTCTAAGTGGTTAAAATGATAAATATCAGGGTGTTTATATCT-AAAACCCTCCCTGACATCATCTTCTCTACGTCTCCGATTAACTCAGCGACTGTGGCTGAACGCCTGCCACCTTTCAAATATTAGGTCGGGCACTCAGTATCGGCAGTTTTATCAATTATAAATGCTTTAAGCTGCATAGaattttaaacgt--taataacagtggttataaatctttaacacaaaagctggctttaaacttattggtaaaataagattagaaatgtcttaagaattgttagcgtttctgtttgcatttattaaacaagtggttttgtgcttatccctgcagaatactatgagatttgccataagggttataaaactataaactcaAccgggcacagtggcttacgcctgtaatcccaacactttgggaggccgaggcaggcggatc-acctgaggttgggagttcgagaccagcctgaccaacatggagaaatcccatctctaccaaaaatgcaaaattagctgggcatggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttga
i chlSab2.chr6                  I 2 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I

a score=249334.000000
s hg38.chr19_GL949751v2_alt        959411 179 +   1002683 acccgggaggcagaagttgcagtgagccgagattgcgccactgcactccagcctgggcaacaagagtgaaactccatctaaaat-aaataaaaata------aaaCATTtgttttttgtagagttgggg--tttcactatgttgcccaggctggtctt-gaactcctcctgggctcaagcaatccaccg
s panTro4.chr19                  59953160 170 +  63644993 acctgggag-----------------ccgagattgcgccactgcactccagcctgggcaacaagagtgaaactccatctaaaat-aaataaaaatagaaataaaaCATTtgttttttgtagagttggggggtttcactatgttgcccaggctggtctt-gaactcctcctgggctcaagcaatccaccg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56900947 177 +  60714840 acccgggaggcagaagttgcagtgagccaagattgcgccactgcactccagcctgggcaacaagagcgaaactccgtctaaaataaaataaaaata------aaaaaaTTGCtttctgtagagttgggg--tttcactacgttgcccaggctgctctt-gaa---ctcctgggctcaagcaatcctccg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103376759 175 - 106955855 acccgggaggcagaggttgcggtgagctgagattgcaccactgcactccagcctgggcaagaagagcgaaactctatcta-----aaaaaaaatta------aaaaaaCtgttttttgtagagttaggg--tttcactatgttgcccaggctggtctt-gaactcctcctgggctcaagcaatctgccg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55821055 172 +  59248254 acccaggaggcggaggttgcagtgagccgagattgcgccactgcactccagcctgggcaacaagagcaaaactccgtctaaaaa-aaaaaaaa---------aaaaaaaaGTGttttgtagaggtggt---tttcactatgttgcccaggctggtctt-gaa---ctcctaggctcaagcaatccactg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47928407 168 +  51301725 acccgggaggcggaggttgcagtgagccgagattgcgccactgcactccagcctgggcaacaagagcaaaactccatct------aaaaaaaa---------aaaaattgtttttttgtagagttggt---tttcactatgttgcccaggctggtcttggaa---ctcctaggctcaagcaatccgctg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47631645 172 +  50890351 acctgggaggcggaggttgcagtgagccgagattgcgccactgcactccagcctgggcaacaagagcaaaactccgtcttaaaa-aaaaaaaa---------aaaaaaTGTttttttgtagagttggt---tttcactatgttgcccaggctggtctt-gaa---ctcctaggctcaatcaatccgctg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I
e rheMac3.chr19                  60678750 160 +  64156825 M

a score=103032.000000
s hg38.chr19_GL949751v2_alt        959590 42 +   1002683 acctcagcctcccaaagtgctgggattacaagtgtgagccac
s panTro4.chr19                  59953330 42 +  63644993 acctcagcctcccaaagtgctgggattacaagtatgagccac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56901124 42 +  60714840 acctcggcctcccaaagtgctgggaatacaggtgtgagccac
i ponAbe2.chr19                 C 0 I 16
s nomLeu3.chr10                 103376934 42 - 106955855 acctcagcctcccaaagtgctgggattacaagtgtgagccac
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60678910 42 +  64156825 Acctcagcctcccaaagtgctgggattgcaggtgtgagctac
i rheMac3.chr19                 M 160 C 0
s macFas5.chr19                  55821227 42 +  59248254 acctcagcctcccaaagtgctgggattgcaggtgtgagctac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47928575 42 +  51301725 acctcagcctcccaaagtgctgggactgcaggtgtgagctac
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47631817 42 +  50890351 acctcagcctcccaaagtgctgggattgcaggtgtgagctac
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I

a score=24788.000000
s hg38.chr19_GL949751v2_alt        959632 16 +   1002683 tgtgcctggccCTATT
s panTro4.chr19                  59953372 16 +  63644993 tgtgcctggccCTATT
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103376976 16 - 106955855 tgtgcctgaccCTACT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60678952 16 +  64156825 tgtgcctgtccCCACT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55821269 16 +  59248254 tgcgcctggccCCACT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47928617 16 +  51301725 tgcgcctggccccact
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47631859 16 +  50890351 tgcgcctggccACATT
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56901166 16 +  60714840 I
e calJac3.chr22_GL285922_random     47246 1752 +    138250 I

a score=320686.000000
s hg38.chr19_GL949751v2_alt        959648 163 +   1002683 GGGTCCTTTT-AAAAGATACAT--AAAAAATCAAATGCAACAGTG------AAGTCAATCACCCGATGGCAGAAATTggggtgctcctggcatgtggtcggtcgaagccaaggacactgctcagcattctgcagtgcacaggacggccccgcccaggcggagaatgatccgg
s panTro4.chr19                  59953388 164 +  63644993 GGGTCCTTTTTAAAAGATACAT--AAAAAATCAAATGCAACAGTG------AAGTCAGTCACCCGATGGCAGAAATTggggtgctcctggcatctggtcggtcgaagccaaggacactgctcagcattgtgcagtgcacaggacggccccgcccaggcggagaatgatccgg
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103376992 164 - 106955855 GGGTCCTTTTTAAAAGATACAT--AAAAAATCAAATGCAACAGTG------AACTCAGTCATCCGATGGCAGAAATTggggtgctcctggcatctggtcggttgaagccaaggacactgctcagcattctgcagtgcacaggacggccccgcccaggcagggaatgatccgg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60678968 171 +  64156825 GCGTCCTTTTTTAAAGATACATGAAAAGAATCAAACGCAACAGTGAAGGT-AAGTCAGTCACCCGATGGCAGAAATTggggtgcctctggcgtctggtcagttgaagccaaggacactgctcagcattcttcaatgcacaggacagccccaccatggcagagaatgatccgg
i rheMac3.chr19                 C 0 I 1315
s macFas5.chr19                  55821285 171 +  59248254 GGGTCCTTTTTTAAAGATACATGAAAAGAATCAAACGCAACAGTGAAGGT-AAGTCAGTCCCCTGATGGAAGAAATTggggtgcctctggcgtctggtcagttgaagccaaggacactgctcagcattcttcaatgcagaggacagccccaccacggcagagaatgatccgg
i macFas5.chr19                 C 0 I 7
s papAnu2.chr19                  47928633 171 +  51301725 GGGTCCTTTCTTAAAGATACATGAAAAGAATCAAACGCAACAGTGAAGGT-AAGTCAGTCCCCCGATGGCAGAAATTGGGGTGCCTCTGGCATCTGGTCAGTTGAAGCCAAGGACACTGCTCAGCATTCttcaatgcacaggacagccccaccGCGGCAGAGAATGATCCGG
i papAnu2.chr19                 C 0 I 7
s chlSab2.chr6                   47631875 171 +  50890351 GGGTCCTTTTTAAAACATACATGAAAAGAATCAAACACAACAGTGAAGGT-AAGTCAGTCACCCGATGGCAGAAATTggggtgcctctggcatctggtcagttgaagccaaggacactgctcagcattcttcaatgcacaggacagccccaccacggcagagaatgatccgg
i chlSab2.chr6                  C 0 I 7
s calJac3.chr22_GL285922_random     48998 148 +    138250 gggt--ttttTTAAAGACACATAAAAAGAATCAAATGTGACAGTTAAGGTCAAGTCGATCACCCAACGCCAGAAATCggggtgctcctgacatctggtgggttgaagcc-agaacaccattcaacattctgaaat-cacaggacggccccGG--------------------
i calJac3.chr22_GL285922_random I 1752 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56901166  16 +  60714840 I

a score=47517.000000
s hg38.chr19_GL949751v2_alt        959811 43 +   1002683 TGACACATATAGGTGGGAAGGATGCACGAATGATGGCGTTTAG
s panTro4.chr19                  59953552 43 +  63644993 TGACACATGTAGGTAGGAAGGATGCACGAATGATGGCGTTTAG
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103377156 43 - 106955855 TGACACATGTAGGTGGGAAAGATGCACGAATGATGGCATTTAG
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55821463 32 +  59248254 TGACACATGTAGGTG-----------TGATTGATGGCATTTAG
i macFas5.chr19                 I 7 I 306
s papAnu2.chr19                  47928811 32 +  51301725 TGACACATGTAGGTG-----------TGATTGATGGCATTTAG
i papAnu2.chr19                 I 7 C 0
s chlSab2.chr6                   47632053 32 +  50890351 TGACACATGTAGGTG-----------TGATTGATGGCATTTAG
i chlSab2.chr6                  I 7 C 0
s calJac3.chr22_GL285922_random     49146 43 +    138250 TGCCACGTGTGGGTGGGAAGGATGCACAGATGTTGGTGTTTAG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56901166 16 +  60714840 I
e rheMac3.chr19                  60679139 1315 +  64156825 I

a score=6423.000000
s hg38.chr19_GL949751v2_alt        959854 4 +   1002683 GAAG
s panTro4.chr19                  59953595 4 +  63644993 GAAG
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103377199 4 - 106955855 GAAG
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55821801 4 +  59248254 aaag
i macFas5.chr19                 I 306 C 0
s papAnu2.chr19                  47928843 4 +  51301725 AAAG
i papAnu2.chr19                 C 0 I 295
s chlSab2.chr6                   47632085 4 +  50890351 AAAG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     49189 4 +    138250 GAAG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56901166 16 +  60714840 I
e rheMac3.chr19                  60679139 1315 +  64156825 I

a score=169104.000000
s hg38.chr19_GL949751v2_alt        959858 111 +   1002683 AATATTATCACTTCTTTCCCGTAAGAGCAACTTAGAGCAAGAAAATGGTATTATTCTTAGGGCCTTCTCTCTTATGGAGGCTCCAAGCCAGGGTTGCCATGGCAGAAGATG
s panTro4.chr19                  59953599 107 +  63644993 AATATTATCACTTCTTTCCCGTAAGAGCAACTTAGAGCAAGAAAATGGTATT---CTTAGGGCCTTCTCTCTTATG-AGGCTCCAAGCCAGGGTTGCCATGGCAGAAGATG
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103377203 107 - 106955855 AATATTATCACTTCTTTCCCATAAGAACAACTTAGAGCAAGAAAATGGTATT---CTTAGGGCCTTCTCTCCTATG-AGGCTCCAAGCCCGGGTTGCCATGGCAGAAGATG
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55821805 107 +  59248254 aaTATTATCACTTGTTTCCTGTAAGAGCAACTTAGAGCAAGAAAATGGTATT---CTTAAGGCCTTCTCTCCTATG-AGGCTCCAAGCCAGGGCTGCCATCGCAGAAGATG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47929142 107 +  51301725 aatattatcacTTGTTTCCCATAAGAGCaacttagagaaagaaaatggtatt---CTTAAGGCCTTCTCTCCTATG-AGGCTCCAAGCCAGGGTTGCCATCGCAGAAGATG
i papAnu2.chr19                 I 295 C 0
s chlSab2.chr6                   47632089 107 +  50890351 AATATTATCACTTGTTTCCTGTAAGAGCAACTTAGAGCAAGAAAATGGTATT---CTTAAGGCCTTCTCTCCTATG-AGGCTCCAAGCCAGGTTTGCCATCGCAGAAGACG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     49193 102 +    138250 AGTGTCATTACTTCTCTCCCATAAGAGGAACTTAGAGCGAGAAAATGATATT---CTTAGGGC---CTCTCCCGTG-AGGCTCCAATC--GTGTTGCCGTGGCAGAGGCTG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e ponAbe2.chr19                  56901166  16 +  60714840 I
e rheMac3.chr19                  60679139 1315 +  64156825 I

a score=1585737.000000
s hg38.chr19_GL949751v2_alt        959969 775 +   1002683 CTGGGCTTG-CTTTTTCCTTGAGAGAACTGTACTCAAGATGATGTAACTGTCACC--CC-GGGTGCCACTTGGGTGCTTTGGAGAAGCGCT-CAGACGCGACACGCCGTGACGACTCCGCGGCAGGCAGCCGGACCTGTCCTCTGGCGTGCGGTTCACGGGCTGTGTTTATCCCCCTGGTTCCTTCA----CAGCCACCTTGGGAAATACGTTGCCTCTGAATC-ACGCCAGGCAGGCTCTCACTG------TGTGTGCTGCGGGGCTGGAAATCAGGGTGACACTCCGCTACCG-AACAGCCTGACTAGGAAGCCAGAAAGACGCTGCCGGCTTT--AGTTTGTCCTTTGACTTTCCTTGATATGAATGAAGATAGAGCACTTCCACACTGCACAACAGGAAAAGCCCAGAACGCTTCCTGGAGATAGCGAGGGGGTGATGCAGCGGACAGCTATGGCTGATGACCCCC---TCACCTCTGACTCCC----------CCTCCCTCCCTGCTTTCTGAACGCACATCCATCACCAACCATAGGTT--CCTGTTTGGGGTTTGCTGGCTGGaaaaaaaaaaaaaaaaaaaaGGAAAGCTGGCTTTCTAGTAAAAACCACTTCCTTTGCTCATTTATCAAACTCAAACGCTAGGAGGGCCACCTAA---CATCCTCCGTCCCACGCAATGGGGTGTTTCTGGAGCACTCCGGT-TTATCAGGGACCCTGTCAGTTGCCATCGCACATGTATATGGGGCCAGCCCCTGTGCCACCGAAGA-GGGGGGATATTGAAAACATGTTACAGCCAGGAGCGG
s panTro4.chr19                  59953706 775 +  63644993 CTGGGCTTG-CTTTTTCCTTGAGAGAACTGTACTCAAGATGATGTAAATGTCGCC--CC-GGGTGCCACTTGGGTGCTTTGGAGAAGTGCT-CAGACGCGACACGCCGTGATGACTCCGCAGCAGCCAGCTGGACCTGTCCTCTGGCTTGCGGTTCATGGGCTGTGTTTATCCCCCTGGTTCCTTCA----CAGCCACCTTGGGAAATATGTTGCCTCTGAATC-ACGCCAGGCAGGGTCTCACTG------TGTGTGCTGCGGGGCTGGAAATCAGGGTGACACTCCGCTACCG-AACAGCCTGACTAGGAAGCCAGAAAGACGCTGCCGGCTTT--AGTTTGTCCTTTGACTTTCCTCGATATGAATGAAGATGGGGCACTTCCACACTGCACAACAGGAAAAGCCCAGAACACTTTCTGGAGATAGCGAGGGGGTGATGCAGCGGACAGCTATGGCTGATGACCCCC--CTCACCTCTGACTCCC----------CCTCCCTCCCTGCTTTCTGAACGCACATCCATCACCAACCATAGGTT--CCTGTTTGGGGTTTGCTGGCTGGGAAAAAAAAAAAAAAAAA--GGAAAGCTGGCTTTCTACTAAAAACCACTTCCTTTGCTCATTTATCAAACTCAAACCCTAGGAGGGCCACATAA---CATCCTCCGTCCCAGGCAATGGGGTGTTTCTGGAGCACTCCGGTGTTATCAGGGACCCTGTCAGTTGCCATCACACATGTATATGGGGCCAGCCCCTGTGCCACCGAAGA-GGGGGGATGTTGAAAACATGTTACAGCCAGGAGCGG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56901182 788 +  60714840 CTGGACTCG-CTTTTTCCTTGAGAGACTTGTACTCGAGATGATGTAAATGTCTCCAGCC-GGGTGCCACTTGGGTGGTTTGGAGAAGTGCTACAGATGCAACATGCCGTGATGACTCCGCAGCAGCCAGCTGGACCTGTCCTCTGGCTTGCGGTTCACGGGCTGTGTTTATCCCCCCGGTTCCTTCA----CAGCCACCTTGGGAAATATGTTGCCTCTGAATC-ACGCCAGGCAGGGTTTCACTGTGCGACTGTGTGCTGCGGGGCTGGAAATCAGGGTGACACTGCGCTACAGCAGCAGCCTGACTAGAAAGGCAGAAGGACGCTGCCATCTTTAGAGTTTGTCCTTTGACTTTCCTCGATATGAATGAAGATGGGGCACTTCCACACCGCGCAACAGGAAAAGCCCAGAAAACTTTCTGGAGATAGTGAGGGGGTGATGCAGCGGACAGCTATGGCTGATGACCCCCCCCTCACCTCTGACTCCC----------CCTCCCTTCCCGCTTTCTGAACGCACATCCATCACCAACCATAGGTTTCCCTGTTTGGGGTTTGCTGGCTGGAAAAAAAAAAAAAAA-----GGAAAGCTGGTTTTCTACTAAAAACCACTTCTTTTGTCCATTTATCAAACTCAAACCCTAGGAGGGCTACATAA---CATCCTCCGTCCCAGGCAACGGGGTGTTTCTGGAGCACTCCGGT-GTATCGGGGACCCAGTCAGTTGCCATCGCATATGTATATGGGGCCATCCCCTATACCACCGAAGAGGGGGGGATGTTGAAAACATGTTACAGCCAGGAGCGG
i ponAbe2.chr19                 I 16 C 0
s nomLeu3.chr10                 103377310 780 - 106955855 CTGTGCTCG-CTTTTTCCTTGAGAGAATTGTACTCAAGATGATGTAAATGTCGCC--CC-GGGTGCCACTTGGGTAGTTTGGAGAAGTGCT-CAGACACAACACGCTGTGATGACTCAGCAGCAGCCAGCTGGACCTGTCCTCTGGCTTGCGGTTCACGGGCTGTGTTTATCCCTCCGGTTCCTTCA----CAGCCACCTTGGGAAATATGTTGCCTCTGAATC-ACGCCAGGCAGGGTCTCACTGTGCGACTGTGTGCTGCGGGGCTGGAAATCAGGGTGACACTCCGCTACAGCAGCAGCCTGACTAGGAAGGCAGAAGGACGCTGCCATCTTTAGGGTTTGTCGTTTGACTTTCCTCAATATGAATGACGATGGGGGACTTCCACACTGTGCAACAGGAAAAGCCCAGAAAACTTTCTGGAGATAGCGAGGGGGTGATGCAGCAGACAGCTATGGCTGATGACCCCC--CTTACCTGTGGCTCCC----------CCTCCCTCCCTGCTTTCTGAACGCACATCCATCACCAACTATAGGTT--CCTGTTTGGGGTTTGCTGGCTGGGAAAAAAAAAGAAAA-----GGAAAGCTGGCTTTCTACTAAAAACCACTTCCTTTGCCCATTTATCAAACTCAAACCCTAGGAGGGCCACATAA---CATCCTCCGTCCCAGGAAACGGGGTGTTTCTGGAGCACTCCGGT-GTATCAGGGACCCGGTCAGTTGCCATCGCATATGTATATGGGGCCAGCCCCTGTGCCACCAAAGA-GCGGGGATGTTGAAAACGTGTTACAGTCAGGAGCAG
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55821912 787 +  59248254 CTGGGCTTGTTTTTTTCCTTGAGAGAATTGTACTCAAGGTGATGTACATGTCGCC--CT-GGGTGCCACTTGGGTGGTTTGGAGAAGTGCT-CGGACGCAACACGCCCTGATGAGTCAACAGCAGCCAGCTGGACCCGTCTTCTGGCTTGCGGTTCACGGGCTGTGTTTATCCCTCTGGTTCCTTCA----CAATCACCTTGGGAGATACGTTGCCTCTGGATC-ACGCCAGGCAGGTTCTCCCTGTGTGACTGTGTGCTGCAGGGCTGGAAATCAGGGTGGCACTCCGCTACAGCGGCAACCTGACTAGGAAGGCAGGAAGATGCTGCCATCTTTAGAGTTTGTCCTTTGACTTTACTCGATATGAATGAAGATGGGGCACTTCCACACTGCACAACAGGAGAAGTCCAGAAAACTTTCTGGAGATAGCGAGAGGGTGATGCAGCGGACAGCTATGACTGATGACTGCC--CTCACCTCTGACTCCC----------GCTTCCTCCCCGCCTTCTGAACGCACATCCATCACCAACCATAGGTT--CTTGTTTGGGGTTTGCTGGCTGGaaaaaaaaaaaaaaaaaaa-GGAAGCCTGGCTTTCTACTAAAAACCACTTCCTTTGCCCATATATCAAACTCAAACCCTCGGTGGGCCACATAACATCATCCTCCATCCCAGGCAACGAGGTGTTTCTGGAGCACTCCGGT-CTATCAGGGACCTGGTCAGTTGCCATCGCATACGTATGTGGGGCCAGCCCCTGTGCCACCGAAGA--GGGGGATGTTGGAAACTTGTTACAGCCGGGAGCGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47929249 782 +  51301725 CTGGACTCG-GTTTTTCCTTGAGGGAATTGTACTCAAGGTGATGTACATGTCACC--CT-GGGTGCCCCTTGGGTGGTTTGGAGAAGTGCT-CGGACTCAACACGCCCTGATGAGTCAACAGCAGCCAGCTGGACCCGTCTTCTGGCTCGCGGTTCACGGGCTGTGTTTATCCCTCTGGTACCTTCA----CAATCACCTTGGGAGATACGTTGCCTCTGGATC-ACGCCAGGCAGGTTCTCCCTGTGCGACTGTGTGCTGCAGGGCTGGAAATCAGGGTGGCACTCCGCTACAGCGGCAACCTGACTAGGAAGGCAGGAAGATGCTGCCATCTTTAGAGTTTGTCCTTTGACTTTACTCGATATGAATGAAGATGGGGCACTTCTACACTGCACAAC---AGAAGTCCAGAAAACTTTCTGGAGATAGTGAGAGGGTGATGCAGCGAACAGCTATGACTGATGACTGCC--CTCACCTCTGACTCCC----------GCTTCCTCCCCGCTTTCTGAACGCACATCCATCACCAACCATAGGTT--CTTGTTTGGGGTTTgctggctgg---aaaaaaaaaaaaaaaa-ggaagcctggCTTTCTACTAAAAACCacttcctttgcccatttatcaAACTCAAACCCTCGGAGGGCCACATAACATCATCCTCCATCCCAGGCAACGAAGTGTTTCTGGAGTACTCTGGT-CTATCAGGGACCTGGTCAGTTGCCATCGCGTATGTATGTGGGGCCAGCCCCTGTGCCACCGAAGAgggggggATGTTGGAAACTTGTTACAGCCGGGAGCGG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47632196 778 +  50890351 CTGGGCTTGTTTTTTTCCTTGAGAGAATTGTACTCAAGGTGATGTACATGTCACC--CT-GGGTGCCACTTGGGTAGTTTGGAGAAGTGCT-CGGACGCAACACGCCCTGATGAGTCAACAGCAGCCAGCTGGACCCGTCTTCTGGCTTGCGGTTCACGGGCTGT--------CTCTGGTTCCTTCACAATCAATCACCTTGGGAGATACGTTGCCTCTGAATC-ACGCCAGGCAGGTTCTCCCTGTGCGAC--TGTGCTGCAGGGCTGGAAATGAGGGTGGCACTCCGCTACAGCAGCAACCTGACTAGGAAGGCAGGAAGATGCTGCCACCTTTAGAGTTTGTCCTTTGACTTTACTCAATATGAATGAAGATGGGGCAGTTCCACACTGCATAACAGGAAAAATCCAGAAAACTTTCTGGAGAT----AGAGGGTGATGCAGCGGACAGCTATGACTGATGACTGCC--CTCACCTCTGACTGCC----------CCTTCCTCCCCGCTTTCTGAACGCACATCCATCACCAACCATAGGTT--CCTGTTTGGGGTTTGCTGGCTGGaaaaaaaaaaaaaaaaaaa-GGAAGCCTGGCTTTCCACTAAAAACCACTTCCTTTGCCCATTTATCAAACTCAAACCCTTGGAGGGCCACATAACATCATCCTCCATCCCAGGCAACGAGGTGTTTCTGGAGCACTCCGGT-GTATCAGGGACCTGGTCAGTTGCCATCGCATACGTATGTGGGGCCAGCCCCTGTGCCACCGAAGA-GGGGGGAGGTTGGAAACTTGTTACAGCTGGGAGCGG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     49295 758 +    138250 CCAGACTTG-TTTTTCCCTTGAGA----TGGTGTCAACATGGTGTCAATGTCGCC--CTGGGGTGCCACTTGGGTGGTTTGGGTATGTGCT-CAG------------------------CAGCCGCCAGCTGGACCCGTCTTGTGCCTTGCAGTTCATGGGCTGTGTTTATGCCCCTGGTTCCTTCA----CGGGCACCTTGGGAGCTTTGTTGCCTCTGAATCAACACCAGGCAGGGTCTCACCATGAGACTGTGTGCTGTGAAGCTGGAAATCAAGGCCACACTCTGCTACAGCAGCAACCTGAGTGGGAAGGCAGGAAGGCGCCGCCGTCTTTAGAGTTTCTCTTTTGACTTTACTCGACGTGAATGAAGACAGAGCACTTTCACACTGCACAGCAGGAG--GTCCAGAAAGCCTCCTGGAGATCGGGAGGGGGTGATGCAGCAGACAGCTGTGGCTCATGACGCCC---TCACCTCTGCCTCCCTCTCCCTCCTTCTCCCTCCCCCATTTCTGAACGCACATCCATCACCAACCATAGGTT--CCTGTTTGGAGTTTACTGGCAGGAAAGAAAAAAA---------GGAAAGCCGGCTTTCTACTAAAAACCACTTCCTTTGACCATTTCTCAAACTC-AACTCTAGGAGGGCCACACATCGCCATCCTCCGTCCCAGGGAACTGGGTGTTTTTGGGGTGCTCAGGT-GTATCAGGGACCCAGTCGGTTGCCACTGAATGTACATATGGGGCCAGCCGCAGTGACGCCAAAGG--GGGGGATATTGAAAACATCTTATAgctgggagcag
i calJac3.chr22_GL285922_random C 0 I 1069
e canFam3.chr1                   20093001 34018 - 122678785 I
e rheMac3.chr19                  60679139 1315 +  64156825 I

a score=21195.000000
s hg38.chr19_GL949751v2_alt        960744 11 +   1002683 Tgcccccttgg
s panTro4.chr19                  59954481 11 +  63644993 Tgcccccttgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56901970 11 +  60714840 Tgcccccttgg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378090 11 - 106955855 cgcccccttgg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55822699 11 +  59248254 Tgcccccttgg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930031 10 +  51301725 TGCCccttgg-
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47632974 11 +  50890351 Tgcccccttgg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51122 11 +    138250 tgccctctggg
i calJac3.chr22_GL285922_random I 1069 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e rheMac3.chr19                  60679139 1315 +  64156825 I

a score=50600.000000
s hg38.chr19_GL949751v2_alt        960755 18 +   1002683 ttcaagcagttcttctgc
s panTro4.chr19                  59954492 18 +  63644993 ttcaagcagttcttctgc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56901981 18 +  60714840 ttcaagcagttcttctgc
i ponAbe2.chr19                 C 0 I 354
s nomLeu3.chr10                 103378101 18 - 106955855 ttcaagcagttcttctgc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680454 18 +  64156825 ttcaagcagttcttctgc
i rheMac3.chr19                 I 1315 C 0
s macFas5.chr19                  55822710 18 +  59248254 ttcaagcagttcttctgc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930041 18 +  51301725 ttcaagcagttcttctgc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47632985 18 +  50890351 ttcaagcagctcttctgc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51133 15 +    138250 ttcaagcaattttgc---
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I

a score=124271.000000
s hg38.chr19_GL949751v2_alt        960773 44 +   1002683 ctcagcctccctaatagctgggattaca-ggcgtgcaccatcacg
s panTro4.chr19                  59954510 44 +  63644993 ctcagcctccctagtagctgggattaca-ggcgtgcaccatcatg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902353 45 +  60714840 ctcagcctctctagtagctgggattacagggcgtgcaccatcacg
i ponAbe2.chr19                 I 354 C 0
s nomLeu3.chr10                 103378119 44 - 106955855 ctcagcctccctagtagctgggattgca-ggcgtgcaccatcacg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680472 44 +  64156825 ctcagcctccctagtagctgggattaca-ggagtgcaccatcacg
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55822728 44 +  59248254 ctcagcctccctagtagctgggattaca-ggagtgcaccatcacg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930059 44 +  51301725 ctcagccttcctagtagctgggattaca-ggagtgcaccatcaCG
i papAnu2.chr19                 C 0 M 503
s chlSab2.chr6                   47633003 44 +  50890351 ctcagcctccctagtagctgggattaca-ggagtgcaccatcacg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51148 41 +    138250 ctcagctcacctagtagctggcattaca-ggcatgcaccacg---
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I

a score=108854.000000
s hg38.chr19_GL949751v2_alt        960817 51 +   1002683 cctgg-ccactgttatgtagtttttaCCACAATTTAAAAAA-GGAA--AGAGTGC
s panTro4.chr19                  59954554 51 +  63644993 cctgg-ccactgttatgtacttttTACCACAATTTAAAAAA-GGAA--AGAGTGC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902398 53 +  60714840 cctggcccagtgttacatactttttaCCACAATTTAAAAAAGGGAA--AGAGTGC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378163 51 - 106955855 cctgg-ccagtgttacgtacttttTACCACAATTCAAAAAA-GGAA--AGAGTGC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680516 51 +  64156825 cctgg-ccagtgttgtgtacttttTATCACAATTTTAAAAA-GGAA--AGAGTGC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55822772 51 +  59248254 cctgg-ccagtgttgtgtacttttTATCACAATTTAAAAAA-GGAA--AGAGTGC
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47633047 51 +  50890351 cctgg-ccagtgttgtgtacttttTATCACAATTTTAAAAA-GGAA--AGAGTGC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51189 53 +    138250 cctgg-ccagtgctctatacttttTATCACAATTTAAAAAA-GGAAAGAGAGTGC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20093001 34018 - 122678785 I
e papAnu2.chr19                  47930103 503 +  51301725 M

a score=162511.000000
s hg38.chr19_GL949751v2_alt        960868 70 +   1002683 CTGGGTGAGTCCTACGCAC-CTATTCGGAGAACCAAAGGCTTTGAGG---TTATCCTCGGCCCAC----CCATCTGAT
s panTro4.chr19                  59954605 69 +  63644993 CTGGGTGAGTCCTAC-CAC-CTATTCAGAGAACCAAAGGCTTTGAGG---TTATCCTCGGCCCAC----CCATCTGAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902451 70 +  60714840 CTGCGTGAGTCCTACACAC-CTATTCAGAGATCCAAAGGCTTTGACG---TTATCCTCGGCCCAC----CCATCTGAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378214 70 - 106955855 CTGGGTGAGTCCTATGCAC-CTATTCAGAGAACCAAAGGCTTTGAGG---TTATCCTCAGCCCAC----CCATCTGAT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680567 73 +  64156825 CTGGGTAAATCCTATGCAC-CTATTCAGAGAACCAGAGGCTTTGAGGCTTGTATCCTCAGCCCAC----CCATCTCAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55822823 73 +  59248254 CTGGGTGAGTCCTACGCAC-CTATTCAGAGAACCAGAGGCTTTGAGGCTTTTATCCTCAGCCCAC----CCATCTCAT
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47633098 70 +  50890351 CTGGGTGAGTCCTACGCAC-CTATTCAGAGAACCAGAGGCTCTGAGG---TTATCCTCAGCCCAC----CCATCTCAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51242 71 +    138250 TTGGGTGAGCCCTACGCACATTATTTAGAGAACCAGAGGTTTTGAGA---TTATCCTCAGGGCCC----CCATCTGAT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20127019 71 - 122678785 CCAGATGAATCCTAT--AC-ATATTTAGAGAACCAGAGGTTTCGAGG---TTACTCTCAGACTACTGTACTATCAGT-
i canFam3.chr1                  I 34018 C 0
e papAnu2.chr19                  47930103 503 +  51301725 M

a score=166234.000000
s hg38.chr19_GL949751v2_alt        960938 73 +   1002683 GGGAGTGTTTCTCAAACTTGCTTTTCCGTGATCTCCCAGTAAGAAATACC-TACT------ACACACACACAGTCTCCgg
s panTro4.chr19                  59954674 71 +  63644993 GGGAGTGTTTCTCAAACTTGCTTTTCCGTGATCTCCCAGTAAGAAATACC-TACT------ACACACACA--GTCTCCAG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902521 73 +  60714840 GGGAGTGTTCCTCAAACTTGCTTTTCCATGAACTCCCAGTAAGAAATACC-TACT------ACACACACACTGTCTCCGG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378284 73 - 106955855 GGGAGTGTTTCTCAAACTTGCTTTTCCATGAACTCCCAGTAAGAAATAGC-TACT------ACACACACACTGTCTCCGG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680640 67 +  64156825 GGGAGTGTTTTTCAAACTTGCTTTT-------CTCCCAGTGAGAAATAATGTCCT------ACACACACACACACTCCTG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55822896 65 +  59248254 GGGAGTGTTTTTCAAACTTGCTTTT-------CTCCCAGTGAGAAATAACGTCCT--------ACACACACACACTCCTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930620 67 +  51301725 GGGAGTGTTTTTCAAACTTGCTTTT-------CTCCCAGTGAGAAATAAcgtcct------acacacacacacactcctg
i papAnu2.chr19                 M 503 C 0
s chlSab2.chr6                   47633168 63 +  50890351 GGGAGTGTTTTTCAAACTTGCTTTT-------CTCCCAGTGAGAAATAACGTCCT----------ACACACTCTCTCCTG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51313 79 +    138250 GGGAGTGTTTCTCTAACTTGCTTTTCCATGATCTCCCAGTAAGAAATCCA-TACTACACACACACACACACACTCTCCTG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20127090 64 - 122678785 AGAAGTATTTCTCAAACTAGTTTTTCCCTGATCCCACAGTAAGAA----------------ATGCACACATtgtataagg
i canFam3.chr1                  C 0 I 82

a score=364969.000000
s hg38.chr19_GL949751v2_alt        961011 147 +   1002683 tcggcatgcttagggtagtcttccaattcccc-ctcctggtatttacaccctggagtggtccgctcctcttgggctgaacctgtaacttgctcccaagcaagagcacacagcaagct----cacgcacgtggttgttggtgtgattctgttt
s panTro4.chr19                  59954745 147 +  63644993 TCGGCATGCTTAGGGTAGTCTTCCAattcccc-ctcctggtattcacaccctggagtggtccactcctcttgggctgaacctgtaacttgctcccaagcaagagcacacagcaagct----cacgcacgtggttgttggtgtgattctgttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902594 147 +  60714840 TCGGTGTGtttagggtagtcttccgattcccc-ctcctggtattcacaccctggactggtccactcctcttgggctgaacctgtaacttgctcccaagcaagagcacatagcaaact----cacgcacatggttgtcggtgtgattgtttct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378357 146 - 106955855 TCGGCGTGCTtagggtggccttccgattcccc-ctcccggtattcccaccctggagtggtccactcctcttgggctgaacctgtaacttactcccaagcaagagcacatagcaagct----cacgcacgtggttg-cggtgtgattctgttt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680707 139 +  64156825 TCGGCGTG-----------CTTCCgattcccc-ctcctggta-tcacaccctggaggggtccactccttttgggctgagtctgtaacttgcccccaagcaagagcatacagcaagctcacgcacgcacgtggttgttggtgtgattcagttt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55822961 135 +  59248254 TCGGCGTG-----------CTTCCGATTCCCC-CTCCTGGTA-TCACACCCTGGAGGGGTCCACTCCTCTTGGGCTGAGTCTGTAACTTGCCCCCAAGCAAGAGCATACAGcaagct----cacgcacgtggttgttggtgtgattcagttt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930687 139 +  51301725 tcGGCGTG-----------CTTCCGATTCCCC-CTCCTGGTA-TCACGCCCTGGAGGGGTCCACTCCTCTTGGGCTGAGTCTGTAACTTGCCCCCAAGCAAGAGCATACAGCAAGCTCACGCACACACGTGGTTGTTGGTGTGATTCAGTTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47633231 135 +  50890351 TCGGTGTG-----------CTTCTGATTCCCC-CTCCTGGTA-TCACACCCTGGAGGGGTCCACTCCTCTTGGGCTGAGTCTGTAACTTGCCCCCAAGCAAGAGCATACAGcaagct----cacgcacgtggttgttggtgtgattcagttt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51392 146 +    138250 CTGG-GGGCctagggtagtctcctgactccccgctcctggtattcactccctggaa-ggtcccctcctcttcggctgagcctataacttgctccctagcaagagcatacagcaagct----cacacgcatagttgttggtgggattctgttt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20127154  82 - 122678785 I

a score=11632.000000
s hg38.chr19_GL949751v2_alt        961158 13 +   1002683 ctccagattgtct
s panTro4.chr19                  59954892 13 +  63644993 ctccagattgtct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902741 13 +  60714840 ccctggcttctcc
i ponAbe2.chr19                 C 0 I 62
s nomLeu3.chr10                 103378503 13 - 106955855 ctcccagctgtct
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680846  6 +  64156825 ctcccg-------
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55823096  6 +  59248254 ctcccg-------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930826 13 +  51301725 CTCCCGGTTGTTG
i papAnu2.chr19                 C 0 I 6
s chlSab2.chr6                   47633366 13 +  50890351 ctctcggttgttg
i chlSab2.chr6                  C 0 I 6
s calJac3.chr22_GL285922_random     51538 13 +    138250 ctcccagttgtta
i calJac3.chr22_GL285922_random C 0 I 9
s canFam3.chr1                   20127236 13 - 122678785 CTCCTGGCTGCCC
i canFam3.chr1                  I 82 C 0

a score=66460.000000
s hg38.chr19_GL949751v2_alt        961171 27 +   1002683 ccattcctccctggcttctccacaggg
s panTro4.chr19                  59954905 27 +  63644993 ccattcctccctggcttctccacaggg
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103378516 27 - 106955855 ccattcctccctggcttctctacaggg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680852 25 +  64156825 --gttcctccctggcttctccacaggg
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55823102 25 +  59248254 --gttcctccctggcttctccacaggg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930845 27 +  51301725 CCGTTCCTCCCTGGCTTCTCCACAGGG
i papAnu2.chr19                 I 6 C 0
s chlSab2.chr6                   47633385 27 +  50890351 ccgttcctccctggcttctccacaggg
i chlSab2.chr6                  I 6 C 0
s calJac3.chr22_GL285922_random     51560 27 +    138250 cagttcctccctggctactccacaggg
i calJac3.chr22_GL285922_random I 9 C 0
s canFam3.chr1                   20127249 23 - 122678785 ---CAGCTCTCGGGCC-CCCCAGAGGG
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56902754 62 +  60714840 I

a score=231827.000000
s hg38.chr19_GL949751v2_alt        961198  98 +   1002683 ccgctcaccatggcagccggctccatcaccaccagccagcgagagggcaagacaagagggctgac--gagggacgctaccatcacagaggtc----agttttgt
s panTro4.chr19                  59954932 100 +  63644993 cggctcaccatggcagccggctccatcaccgccagccagcgagagggcaagacgagagggctgacaagagggacgctaccatcacagaggtc----agttttgt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902816 100 +  60714840 ccgctcgccatggcagccggctccatcaccgccggccagcgagagggcaagacaagagggctgacaagagggacgctaccatcacagaggtc----agttttgt
i ponAbe2.chr19                 I 62 C 0
s nomLeu3.chr10                 103378543 100 - 106955855 ccgctcaccatggcagccgactccatcaccgccagccagtgagagggcaagacaagagggctgacaagagggacgctaccatcacagaggtc----agtttcgt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680877  99 +  64156825 ccactcaccatgacagctggctccaccacagccagccagcgagagggcaagac-agagggctggcaggagggatgctaccatcacagaggtc----ggttttgt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55823127  98 +  59248254 ccgctcaccatgacagctggctccaccacagccagccagcgagagggcaagac-agagggctggcaggagggatgctaccatc-cagaggtc----ggttttgt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930872  83 +  51301725 CCACTCACCATGACAGCTGGCTCCACCACA----------------GCAAGAC-AGAGGGCTGGCAGGAGGGATGCTACCACCACAGAGGTG----GGTTTTGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47633412  99 +  50890351 ccgctcaccatgacagctggctccaccacagccagccagcgagagggcaagac-agacggctggcaggagggatgctcccatcacagaggtc----ggttttgt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     51587 101 +    138250 ccgcccaccatggcagctagctctatcacagccagccatccagcaggcaagac-agagggcTGGCAG--GGAGTTATAGCATCACAGAGCTCAGGTGGttttgt
i calJac3.chr22_GL285922_random C 0 I 362
s canFam3.chr1                   20127272  59 - 122678785 ----------TGGCTCACAGCACTATTGCAAC-----------AAGGCAGTAC-------------------ATGCTAGCAGTACAGATGCCCGGCAgt-----
i canFam3.chr1                  C 0 C 0

a score=127738.000000
s hg38.chr19_GL949751v2_alt        961296 57 +   1002683 aacctaaccacaagacta-acctactgtcacttctgccctatcctact-gctagaagcc
s panTro4.chr19                  59955032 57 +  63644993 aacctaaccacaagacta-acctaccgtcacctctgccctatcctact-gctagaagcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902916 57 +  60714840 aacctaaccacaagacta-acctaccgtcacctctgccctatcctact-gctagaagcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378643 49 - 106955855 a--------acaagacta-acctaccgtcacctctgccctaccctact-gctagaagcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60680976 53 +  64156825 aacctaaccacaagacta-acc----gtcacctctgccctatcctact-gctagaaacc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55823225 57 +  59248254 agcctaaccgcaagacta-accaactgtcacctctgccccatcctact-gctagaaacc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47930955 57 +  51301725 AGCCTAACCACAAGACTA-ACCAACTATCACCTCTGCCCTATCCTACT-GCTAGAAACC
i papAnu2.chr19                 C 0 I 310
s chlSab2.chr6                   47633511 57 +  50890351 aacctaaccacaagacta-accagctgtcacctctgccctatcctacg-gctagaaact
i chlSab2.chr6                  C 0 I 294
s canFam3.chr1                   20127331 59 - 122678785 aacctaatcccagaatcagacattccgtcagcttcactctgttcttttcactggaagtg
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     51688 362 +    138250 I

a score=10312.000000
s hg38.chr19_GL949751v2_alt        961353 4 +   1002683 agtc
s panTro4.chr19                  59955089 4 +  63644993 agtc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902973 4 +  60714840 agtc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378692 4 - 106955855 cgtc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60681029 4 +  64156825 agtc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55823282 4 +  59248254 agtc
i macFas5.chr19                 C 0 I 305
s papAnu2.chr19                  47931322 4 +  51301725 agtc
i papAnu2.chr19                 I 310 C 0
s chlSab2.chr6                   47633862 4 +  50890351 agtc
i chlSab2.chr6                  I 294 C 0
s canFam3.chr1                   20127390 4 - 122678785 agtg
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     51688 362 +    138250 I

a score=13528.000000
s hg38.chr19_GL949751v2_alt        961357 5 +   1002683 gctac
s panTro4.chr19                  59955093 5 +  63644993 gctac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902977 5 +  60714840 gctac
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378696 5 - 106955855 gctac
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60681033 5 +  64156825 gctaC
i rheMac3.chr19                 C 0 I 539
s macFas5.chr19                  55823591 5 +  59248254 gctac
i macFas5.chr19                 I 305 C 0
s papAnu2.chr19                  47931326 5 +  51301725 gcTAC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47633866 5 +  50890351 gctac
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20127394 5 - 122678785 gttgg
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     51688 362 +    138250 I

a score=233294.000000
s hg38.chr19_GL949751v2_alt        961362 118 +   1002683 atctcccccacactc--------------------aaagggaggtggtcgcacCGTGGGGTCCA--CTGGAAGTTGCCTACCAGACTCAGGTCATCCCAAACACACCCTCTAGCCATT------TGGTGTGGCATCGGAAAGAAAA
s panTro4.chr19                  59955098 118 +  63644993 atctcccccacactc--------------------aaagggaggtggtcgcacTGTGGGGTCCA--CTGGAAGTTGCCTACCAGACTCAGGTCATCCCAAACACACCCTCTAGCCATT------TGGTGTGGCATCGGAAAGAAAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56902982 118 +  60714840 atctcccccacactc--------------------aaagggaggtggtctcacTGTGGGGTCCA--CTGGAAGTTGCCTACCAGAGTCAGGTCATCCCAAACACACCCTCCAGCCATT------TAGTATGGCATTGGAAAGAAAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378701 118 - 106955855 atctcccccacactc--------------------aaagggaggtggtctcacTGTGGGGTCCA--CTGGAAGTTGCCTACCAGAGTCAGGTCATCCCAAACACACCCTCCAGCCATT------TGGTATGGCATCGGAAAGAAAA
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55823596 117 +  59248254 atct-ccccacagtc--------------------aaagggaggtggtctcacTGTGGGGTCCA--GTGGAAGTTGCCTACCAGAGTCAGGTCATCCCAAATACACCCTCCAGCCGTT------GGGTATGGCATCAGAAAGAAAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47931331 117 +  51301725 ATCT-CCCCACAGTC--------------------AAAGGGAGGTGGTCTCACTGTGGGGTCCA--CTGGAAGTTGCCTACCAGAGTCAGGTCATCCCAAATACACCCTCCAGCCGTT------GGGTATGgcatcaaaaagaaaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47633871 117 +  50890351 atct-ccccacagtc--------------------aaagggaggtggtctcacTGTGGGGTCCA--CTAGAAGTTGCCTACCAGAGTCAGGTCATCCCAAATACACCCTCCAGCTGTT------GGGTATGGCATCAGAAAGAAAA
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20127399 144 - 122678785 gtcctgcccacagttggaggtcagaaggcatggagagggggaggtgggatcgt--tgggctccaggctggaaggtgcccaccCGAGTCTGTTCATCCCAAACATATCCTTTGGCTGTTGTGGTCTGATGTGGTAGCAAAAAGAAAA
i canFam3.chr1                  C 0 I 307
e calJac3.chr22_GL285922_random     51688 362 +    138250 I
e rheMac3.chr19                  60681038 539 +  64156825 I

a score=260824.000000
s hg38.chr19_GL949751v2_alt        961480 151 +   1002683 CTAAggccaggtacggtggctcatgcctgtaatcccaacaatttgggaggccatggcggaagggtcacttgagcccaggagtttgagaccagcctgggcaacatagcaaatgttatgttgccacctctacaaataattagccaagtgtggt
s panTro4.chr19                  59955216 144 +  63644993 CTAAggccaggtacggtggctcatgcctgtaatcccaacaatttgggaggccatggcggaagggtcacttgagcccagaagtttgagaccagcctgggcaacatagcaa-------gaccccacctctacaaataattagccaagtgtggt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903100 144 +  60714840 CTAAggccaggtatggtggctcatgcctgtaatcccaacaatttgggaggccatggcagaagggtcacttgagcccaggagtttgagaccagcctgggcaacatagcaa-------gaccccacctctacaaataattagccaagtgtggt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378819 144 - 106955855 CTAAggccaggtatggtggctcacgcctgtaatcctaacaatttgggaggccatggtggaagggtcacttgggcccaggagtttgagaccagcctgggcaacacagcaa-------gaccccacctctacaaataattagccaagtgtggt
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55823713 144 +  59248254 CGACggccaggtacagtggctcatacctgtaatcccaacaatttgggaggccgtggcagaaggatcacttgagcccaggagtttgagaccagcctgggcaacatagcaa-------gaccccacctctacgaataattagccaagtgtggt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47931448 144 +  51301725 ctacggccaggtacagtggctcatacctgtaatcccaacaatttgggaggccatggcagaaggatcacttgagcccaggagtttgagaccagcctgggcaacatagcaa-------gaccccacctctacaaataattagccaagtgtggt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47633988 143 +  50890351 CTACggccaggtacagtggctcatacctgtaatcccaacactttgggaggccat-gcagaaggatcacttgagcccaggagtttgagaccagcctgggcaacatagcaa-------gaccccacctctacaaataattagccaagtgtggt
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I
e calJac3.chr22_GL285922_random     51688 362 +    138250 I
e rheMac3.chr19                  60681038 539 +  64156825 I

a score=914406.000000
s hg38.chr19_GL949751v2_alt        961631 390 +   1002683 ggcatgcacctgtagtcccagatactcaggaggctgaggcaggagaatcac---aggtcgaggttgtagtgagctgtgacggcactgcactccagccttggcaacacagtaagacctcgtctctaaaaaagcaaaaaGggctgggtgcactggctcacacctataatcccagcactttgggaggccaagacgggtggatcacctgaggtcaggagttcaagataag-cctggccaacatggtgatacc--gtctttaattagccaggtgtggtggtgggcgcctgtaatcccagctactcgggaggctgaggcatgagaatcgcttgaacatgggagac-acaggttgcagtgagctgagatcatgccattgcactccagcctgggcaacagagcga
s panTro4.chr19                  59955360 391 +  63644993 ggcgtgcacctgtagtcccagatactcaggaggctgaggcaggagcatcac---aggtcgaggttgtagtgagctgtgacggcactgcactacagccctggcaacacagtaagaccttgtctctaaaaa-gcaaaaaGggctgggtgcactggctcacacctataatcccagcactttgggaggccaagacgggtggatcacctgaggtcaggagttcaagatcag-cctggccaacatggtgataccctgtctttaattagccaggtgtggtggtgggcgcctgtaatcccagctactcgggaggctgaggcatgagaatcgcttgaacatgggagac-acaggttgcagtgagctgagatcatgccattgcactccagcctgggcaacagagcga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903244 393 +  60714840 ggcatgcacctgtagtcccagatactcaggaggctgaggcaggagaatcacaggaggtcgaggttgtagtgagctgtgatggcactgcactccagccttggcaacacagtgagaccttgtcgctaaaaa-gcaaaaaGggccaggtgcactggctcacacctataatcccagcactttgggaggccaagacgggtggatcacctgaggtcaggagttcaagaccag-cctggccaatatggtgataccc-gtctttaattagccaggtgtggtggtgggcgcctgtaatcccagctactcgggaggctgaggcatgagaatcgcttgaacctgggagac-agaggttgcagtgagccgagatcatgccattgcactccagcctgggcaacagagcga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103378963 395 - 106955855 ggcatgcacctgtagtcccagatactcaggaggctgaggcaggagaatcacaggaggttgaggttgtagtgagctgtgatggcactgcactccagccttggcaacacagtgagaccttgtctctaaaaa-gcaaaaaGggccaggtgcactggctcacacctgtcatcccagcactttgggaggccaagacgggtagatcacctgaggtcaggagttcaagaccag-cctggccaacatggtgataccctgtctttaattagccaggtgtggtggtgggcacctgtaatcccagctactcaggaggctgaggcatgagaatcgcttgaacctgggagacaagaggttgcagtgagccaagatcatgccattgcactccatcctggacaacagagcga
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60681577 393 +  64156825 ggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacaggaggtcgaggctgtagtgagctgtgatggcactgcactccagccttagca--agagtgagaccttgtctctaaaaa-gcaaaaaGggctgggtgcactggctcacacctgtaattcctgtactttgggaggccaagacgggtggatcacctgaggtcaggagttcaagaccaggcctggccaacatggtgatgcccagtcttcaattagccaggtgtggtggaagacgcctgtaatcccagctactcgagaggcggaggcatgagaatcgcttaaacccgggaggc-agaggttgcagcgagccgagatcatgccattgcactccagcctgggcaacagggtga
i rheMac3.chr19                 I 539 C 0
s macFas5.chr19                  55823857 393 +  59248254 ggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacaggaggtcgaggctgtagtgagctgtgatggcactgcactccagccttagca--agagtgagaccttgtctctaaaaa-gcaaaaaGggctggctgcactggctcacacctgtaattcctgtactttgggaggccaagatgggtggatcacctgaggtcaggagttcaagaccaggcctggccaacatggtgatgccccgtcttcaattagccaggtgtggtggaagacgcctgtaatcccagctactcgagaggctgaggcatgagaatcgcttgaacccgggaggc-agaggttgcagtgagccgagatcatgccattgcactccagcctgggcaacagggtga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47931592 393 +  51301725 ggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacaggaggtcgaggctgtagtgagctgtgatggcactgcactccagccttagca--agagtgagaccttgtctctaaaaa-gcaaaaagggctgggtgcactggctcacacctgtaattcctgcactttgggaggccaagacgggtggatcacctgaggtcaggagttcaagaccaggcctggccaacatggtgatgcCCCGTCttcaattagccaggtgtggtggaagacgcctgtaatcccagctactcgagaggctgaggcatgagaatcgcttgaacccgggaggc-agaggttgcagtgagccgagatcatgccattgcactccagcctgggcaacagagcga
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47634131 382 +  50890351 ggtgtgcacctgtagtcccagctactcaggaggctgagacaggagaatcacaggaggtcgaggctgtagtgagctgtgatggcactgcactccagccttagca--agagtgagaccttgtctctaaaaa-gcaaaaaGggctgggtgcactggct--cacctgtaattcctgcactttgggaggccaagacgggtggatcacctgaggtcaggagttcaagaccagacctggccaacatggtgatgccccgtctttaattagccaggtgtggtggtgcacgcctgtcattccagctattcgagaggctgaggcatgag---------aacccaggaggc-agaggttgcagtgagccgagatcatgccattgcactccagcctgggcaacagagcga
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I
e calJac3.chr22_GL285922_random     51688 362 +    138250 I

a score=684584.000000
s hg38.chr19_GL949751v2_alt        962021 254 +   1002683 gactAggtggctgttctgtgtactgtgggatattgagtagcatccctggcctccccagtaTCTCAAATATGAA------aacatgttttctatctcgattactgagcttttcggtgcctccttcggttctgcacctaagctaagagccccttcatctcaccctgatctcTATCCAGTTTCTAACACAGCAGTCTTGTAAGATGCCCGGACTTAAA-CGGTTATTTCCTGTGAAACAGGTGAAAGGGGCTTTCATCTCTAAA
s panTro4.chr19                  59955751 253 +  63644993 gactAggtggctgttctgtgtactgtgggatattgagtagcatccctggcctccccagtaTCTCAAATATGAA------aacatgttttctatctcgattactgagcttttcggtgcctccttcggttctgcacctaagctaagagccccttcatctcaccctGATGTCTATCCAGTTTCTAACA--GCAGTCTTGTAAGATGCCCGGACTTAAAACGGTTACTGCCTGTGAAACAGGTGAAAGGGGCTTTCATCTCTAAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903637 245 +  60714840 gactgggtggctgttctgtgtgctgtaggatattgagcagcatccctggcctccccaGCATCTCAAATATGAA------aacatgttttctatcttgattactgagcttttcggtgcctcctttggttctgcacctaagctaagagccgcttcatctcagcctgatcTTTATCCAGTTTCTAACACAGCAGTCTTGTAAGATGCCCGGACTTAAA-CGGTTATTGCCT---------GTGAAAGGGGCTTTCATCTCTAAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103379358 247 - 106955855 gactgggtggctgttctgtgtactgcaggatactgagcagtatccctggcctgcccactaTCTCAAATATGAA------aacatgttttctatcttgattactgagcttttcggtgcctccttcggttctgcacctaagctaagagccccttcatctcaccctgatctcTATCCAGTTTCTAACACAGCAGTCTTGTAAGATGCCCGGACTTAAA-CGGTTATTGCCTGTGAA-------AAAGGGGCTTTCATCTCTAAA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60681970 253 +  64156825 gactgggtggctattctgcgtactgtaggatattgagcagcatccctggcctccccagtaTCTCAAATATGAA------aacatgttttatatctcgattactgagcttttccgtgtctccttcggttctgcacctaagctgagagccccttcctctcaccctgatctctacccAGTTTCTAACA-AGCCGTCTTGTAAGATGCCCGGACTGAAA-CGGTTATGGCCTGTGAAAGGGGTGAAGGGGGCTTTCATCTCTAAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55824250 253 +  59248254 gactgggtggctgttctgcgtactgtaggatattgagcagcatccctggcctccccagtaTCTCAAATATGAA------aacatgttttatatctcgattactgagcttttccgtgtctccttcggttctgcacctaagctgagagccccttcctctcaccctgatctctacccAGTTTCTAACA-AGCCGTCTTGTAAGATGCCCGGACTGAAA-CGGTTATGGCCTGTGAAAGGGGTGAAGGGGGCTTTCATCTCTAAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47931985 253 +  51301725 gactgggTGGCTGTTTTGCATACTGTAGGAtattgagcagcatccctggcctccccAGTATCTCaaatatgaa------aacatgttttatatCTCGATTACTGAGCTTTTCAGTGTCTCCTTCGGTTCTGCACCTAAGCTGAGAGCCCCTTCCTCTCACCCTGATCTCTACCCAGTTTCTAACA-AGCCGTCTTGTAAGATGCCCAGACTGAAA-CAGTTATGGCCTGTGAAAGGGGTGAAGGGAGCTTTCATCTCTAAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47634513 252 +  50890351 gattgggtggctgttctgtgtactgtaggatatccagcag-atccctggcctccccagtaTCTCAAATATGAA------aacatgttttatatctcgattactgagcttttccgtgtctccttaggttctgcacctaagctgagagccccttcctctcaccctgatctctacccAGTTTCTAACA-AGCCGTCTTGCAAGATGCCCGGACTTAAA-TGGTTATGGCCTGTGAAAGGGGTGAAGGGGGTTTTCATCTCTAAA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     52050 259 +    138250 GGCTGAGCGGTAGTTCTGTGTATTGTAGGCTACTGAGCAGCTTCCTTGGCCTCCCCAATATCCCAAAGAAAAATACTGGAAAACTCTTTGTATCCCAATGACTGAGCTTTTTAGTGCCTTCTTCAGTTCTGCACCTAAGCCCAGCGCCCCTTCAGCTCACCC-GACCTCCACCCAGTTTCTAACACATCAGTCTTGTAAGAGCCCCAGACTTAAG-TGACTATCGCCTGTGAAAGGGGTAAGAGGAGTTTTCATCTCTAAA
i calJac3.chr22_GL285922_random I 362 C 0
e canFam3.chr1                   20127543 307 - 122678785 I

a score=1911.000000
s hg38.chr19_GL949751v2_alt        962275 1 +   1002683 A
s panTro4.chr19                  59956004 1 +  63644993 A
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903882 1 +  60714840 A
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60682223 1 +  64156825 A
i rheMac3.chr19                 C 0 I 1
s macFas5.chr19                  55824503 1 +  59248254 A
i macFas5.chr19                 C 0 I 1
s papAnu2.chr19                  47932238 1 +  51301725 A
i papAnu2.chr19                 C 0 I 1
s chlSab2.chr6                   47634765 1 +  50890351 A
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I
e calJac3.chr22_GL285922_random     52309 0 +    138250 C
e nomLeu3.chr10                 103379605 0 - 106955855 C

a score=-1107.000000
s hg38.chr19_GL949751v2_alt        962276 1 +   1002683 -A
s panTro4.chr19                  59956005 1 +  63644993 -A
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903883 1 +  60714840 -A
i ponAbe2.chr19                 C 0 C 0
s chlSab2.chr6                   47634766 1 +  50890351 T-
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I
e calJac3.chr22_GL285922_random     52309 0 +    138250 C
e nomLeu3.chr10                 103379605 0 - 106955855 C
e papAnu2.chr19                  47932239 1 +  51301725 I
e macFas5.chr19                  55824504 1 +  59248254 I
e rheMac3.chr19                  60682224 1 +  64156825 I

a score=2739.000000
s hg38.chr19_GL949751v2_alt        962277 12 +   1002683 GTCGGAACtttt
s panTro4.chr19                  59956006 12 +  63644993 GTCGGAACtctt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903884 12 +  60714840 GTCTGAACTTTT
i ponAbe2.chr19                 C 0 I 13
e canFam3.chr1                   20127543 307 - 122678785 I
e calJac3.chr22_GL285922_random     52309  0 +    138250 C
e nomLeu3.chr10                 103379605  0 - 106955855 C
e chlSab2.chr6                   47634767  0 +  50890351 C
e papAnu2.chr19                  47932239  1 +  51301725 I
e macFas5.chr19                  55824504  1 +  59248254 I
e rheMac3.chr19                  60682224  1 +  64156825 I

a score=22275.000000
s hg38.chr19_GL949751v2_alt        962289 249 +   1002683 ttttttttttgagacggaatcttgctctgtcacccaggctggagggcagtggcatgatctcggctcactgcaatctccgcctcccagcttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccatgcccagctaattttttgtatttttttagtagaaacagggtttcattgtgttagccaggatggtctcgatctcctgacctcgtgatccaccgcgcccggcc
s panTro4.chr19                  59956018 249 +  63644993 ttttttgtttgagacggaatctcgctctgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaagctccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccatgcctagctaattttttgtatttttttagtagaaacggggtttcattgtgttagccaggatggtctcgatctcctgacctcgtgatccaccgcgcccggcc
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I
e ponAbe2.chr19                  56903896  13 +  60714840 I
e calJac3.chr22_GL285922_random     52309   0 +    138250 C
e nomLeu3.chr10                 103379605   0 - 106955855 C
e chlSab2.chr6                   47634767   0 +  50890351 C
e papAnu2.chr19                  47932239   1 +  51301725 I
e macFas5.chr19                  55824504   1 +  59248254 I
e rheMac3.chr19                  60682224   1 +  64156825 I

a score=1820.000000
s hg38.chr19_GL949751v2_alt        962538 2 +   1002683 AA
s panTro4.chr19                  59956267 2 +  63644993 AA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903909 2 +  60714840 AA
i ponAbe2.chr19                 I 13 C 0
s nomLeu3.chr10                 103379605 2 - 106955855 AA
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     52309 2 +    138250 AA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I
e chlSab2.chr6                   47634767 0 +  50890351 C
e papAnu2.chr19                  47932239 1 +  51301725 I
e macFas5.chr19                  55824504 1 +  59248254 I
e rheMac3.chr19                  60682224 1 +  64156825 I

a score=705182.000000
s hg38.chr19_GL949751v2_alt        962540 282 +   1002683 GTCTGAACTTTTGCATGGCCTGTTGCCCTGGTGATAAACTGATGCCTTGT-TTCCTAAAAGGAATAAAGCCATGAGTTGCCTTTGTTCAGCTCATGGGCATTCACCCATGCACAGAGG-AAAAATAAAATCTACGACTCGGGTACATTTTCTTCTTTTTTTTTTCTTTTAAATGAGCAAGTTTGAGAGTCTGCAGTTTGGACTACCATGAGAATTGATAGGAAGGTGGGAGTCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
s panTro4.chr19                  59956269 281 +  63644993 GTCTGAACTTTTGCATGGCCTGTTGCCCTGGTGATAAACTGATGCCTTGT-TTCCTAAAAGGAATAAAGCCATGAGTTGCCTTTGTTCAGCTCATGGGCATTCACCCATGCACAGAGG-AAAAATAAAATCTACGACTCGGGTACATTTTCTTCTTTTTTTTT-CTTTTAAATGAGCAAGTTTGAGAGTCTGCAGTTTGGACTACCATGAGAATTGATAGGAAGGTGGGAGTCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56903911 268 +  60714840 GTCTGAACTTTTGCGTGGCCTGTTGCCCTGGTGATAAACTGATGCCTTGT-TTCCTGAAAGGAGTAAATCCATGACTTGCCTTTGTTCAGCTCATGGGCATTCACCCATACACAGAGGAAAAAATAAAACCTACGACTCGGGCACATTT---------------TTTTTTAATGAGCAAGTTTGAGAGTCTGCGGTTTGGACTACCATGAGAATTGATAGGAAGGTGGGAGCCCCAGGCAATCCCGGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103379607 274 - 106955855 GTCTGACCTTTTGCATGGCCTGTTGCCCTGGTGATAAACTGATGCCTTGT-TTCCTAAAAGGAGTAAATCCATGGCTTGCCTTTGTTCAGCTCATGGGCATTCACCCATACACAGACG-AAAAACAAAACCTACGACTCGGGAACATTT-------TTTTTTT-TTTTTAAATCAGCAAATTTGAGAGTCTGCGGTTTAGATTACCGTGACAAGTGATAGGAAGGTGGGAGCCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60682225 253 +  64156825 GTCTGAACTTCTGCATGGCCTGTTGCCCTGGTGATAAA----------------CTAAAAGGAAGAAATCCAGGAGTTGCCTTTGTTCAGCTCA-GGGCATTCACCCATGCACAGAGGAAAAAGTAAAACCTACGACTCAAGTACATTTTC-----------T-TTTTTTAGTGAGCAAGTTTGAGAG--TGCAGTTTGGACTACCATGAGAATTGACAGGAAGGTGGGAGCCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
i rheMac3.chr19                 I 1 C 0
s macFas5.chr19                  55824505 255 +  59248254 GTCTGAACTTCTGCATGGCCTGTTGCCCTGGTGATAAA----------------CTAAAAGGAAGAAATCCAGGAGTTGCCTTTGTTCAGCTCA-GGGCATTCACCCATGCACAGAGGAAAAAGTAAAACCTACGACTCAAGTACATTTTC-----------T-TTTTTTAGTGAGCAAGTTTGAGAGTCTGCAGTTTGGACTACCATGAGAATTGACAGGAAGGTGGGAGCCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
i macFas5.chr19                 I 1 C 0
s papAnu2.chr19                  47932240 263 +  51301725 GTCTGAACTTCTGCATGGCCTGTTGCCCTGGTGATAAA----------------CTAAAAGGAAGAAATCCAGGAGTTGCCTTTGTTCAGCTCATGGGCATTCACCCATGcacagaggaaaaagtaaaacctACGACTcaagtacattttc----ttttcttt-ttttttagtgagCAAGTTTGAGAGTCTGCAGTTTGGACTACCATGAGAATTGATAGGAAGGTGGGAGCCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCAAG
i papAnu2.chr19                 I 1 C 0
s chlSab2.chr6                   47634767 279 +  50890351 GTCTGAACTTCTGCATGGCCTGCTGCCCCGGTGATAAACTGAGGTCTTGT-TTCCTAAAAGGAAGAAATCCATGAGTTGCCTTTGTTCAGCTGGTGGGCATTCACCCATGCACAGAGGAAAAAGTAAAACCTACGACTCAAGTACCttttc---ttttttttt-ttttttAGTGAGCAGGTTTGAGAGTCTGCAGTTTGGACTACTATGAGAATTGATAGGAAGGGGGGAGCCCCAGGCAATCCCAGGTCCTGTAGCAGCAGCTGGTGGGGTTCCCACTCCATG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     52311 262 +    138250 GTCTGAACTTCTGCATGGCCTGGTGCCCTGGTGATAACCTGATGTCTTGTGTCCCTAAAAGGAATAAATCCATGAGTTGTCTTTGTTCAGCGCATGGACGTTCCCGCGTACACAGAGGAAAAAATAAAACCTACGACTCTGCTGCATTT-------------T-TTTTTAAATGAGCAAGTTTCAGAGTCTGCAGTTTGGA------TGAGAACTGACAGGAAGGCGGGAGCCCCAGGCACTCCCAGGTCCTT--GCAGCAGCTGGTGGAGTTCCCAGTCCACT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20127543 307 - 122678785 I

a score=261570.000000
s hg38.chr19_GL949751v2_alt        962822 94 +   1002683 CCGTGCAGAGCCTGAACTCAGGATGACACCTGCACCTGCTCTCTGGCTGGGCTCTGGCACAGGAAGCCCTCAGCAAACACCCC-CGGCACAGCCA-------
s panTro4.chr19                  59956550 87 +  63644993 CCGTGCAGAGCCTGAACTCGGGATGACACCTGCACCTGCTCTCTGGCTGGGCTCTGGCACAGGAAGCC-------AACACCCC-TGGCACAGCCA-------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904179 94 +  60714840 CCGTGCAGAGCCTGAACTTGGGATGACACCTGCACCTGCTCTCTGGCCAGACTCTGGCACAGGAAGCCCTCAGCAAACACCCC-TGGCAAGGGCT-------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103379881 94 - 106955855 CCGTGCAGAGCCTGAACTCGGGATGACCCCTGCACCTGCTCTCTGGCCGGGCTCTGGCACAGGAAGCCCGCAGCAAACACCCC-TAGCAAGGGCT-------
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60682478 94 +  64156825 CCGTGCAGAGCCTGAACTCGGGATGACACCTGCACCTGCTCTCTGGCCGGGCTCTGGCACAGGAAGCCCTCAACAAACGCCCC-TGGCAAGGGCT-------
i rheMac3.chr19                 C 0 I 31
s macFas5.chr19                  55824760 94 +  59248254 CCGTGCAGAGCCTGAACTCGGGATGACACCTGCACCTGCTCTCTGGCCGGGCTCTGGCACAGGAAGCCCTCAACAAACGCCCC-TGGCAAGGGCT-------
i macFas5.chr19                 C 0 I 11
s papAnu2.chr19                  47932503 94 +  51301725 CCGTGCAGAGCCTGAACTCGGGATGACACCTGCACCTGCTTTCTGGCCTGGCTCTGGCACAGGAAGCCCTCAGCAAACGCCCC-TGGCAAGGGCT-------
i papAnu2.chr19                 C 0 I 11
s chlSab2.chr6                   47635046 93 +  50890351 CCGTGCAGAGCCTGAACTCGGGATGACACCTGCACCTGCTCTCTGGCC-GGCTCTGGCACAGGAAGCCCTCAGCAAACACCCC-TGGCAAGGGCT-------
i chlSab2.chr6                  C 0 I 11
s calJac3.chr22_GL285922_random     52573 87 +    138250 CCAGGCAGAGCTTGACCTC-GGATGA------CACGTGCTCTCTGGCCGGGATCTGGCACAGGAAGCCCTCAGCAAGCACCCC-TGGCAAGGGCT-------
i calJac3.chr22_GL285922_random C 0 I 11
s canFam3.chr1                   20127850 89 - 122678785 CTGTGC-GGGCCTGTCCTCAGGGGTGTTCCGGCAGCT------CGGCCAGGGTATGGCACATGTA------AGTGAACATTCAGCAGCAAGGAACGCACAGC
i canFam3.chr1                  I 307 C 0

a score=11408.000000
s hg38.chr19_GL949751v2_alt        962916 18 +   1002683 ------TGCCATAGCCA-----------GACAACA
s panTro4.chr19                  59956637 18 +  63644993 ------TGCCATAGCCA-----------GACAACA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904273 18 +  60714840 ------GTGCACAGCCA-----------GACAACA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103379975 29 - 106955855 ------GTGCACAGCCAGACAACAGCCGGACAACA
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55824865 16 +  59248254 --------CAGTGAACA-----------GACAACA
i macFas5.chr19                 I 11 C 0
s papAnu2.chr19                  47932608 16 +  51301725 --------CAGTGAACA-----------GACAACA
i papAnu2.chr19                 I 11 C 0
s chlSab2.chr6                   47635150 16 +  50890351 --------CGGTGAACA-----------GGCAACA
i chlSab2.chr6                  I 11 C 0
s calJac3.chr22_GL285922_random     52671 14 +    138250 ----------ACGGCCA-----------GACAACA
i calJac3.chr22_GL285922_random I 11 C 0
s canFam3.chr1                   20127939 24 - 122678785 TGCCACTGATCCAGCCA-----------GGCGACA
i canFam3.chr1                  C 0 C 0
e rheMac3.chr19                  60682572 31 +  64156825 I

a score=999757.000000
s hg38.chr19_GL949751v2_alt        962934 355 +   1002683 GCTCG--CTGTACCACaccatcatgggagacagc--agtta-ttctgagcatctcactgctgaagaaaccaaggctc-agagag--gacca-tgcatgcacaaggtcccacagGGACCCAAGAATCC-ACCAAGTGT--CAGACAACTTGCCCATGCTCTTCACGGAGCACCTTGGAACCCTCCCCGACAGGCACCGCTGGCTCTCCTGACGTGGCC-TGCAAGTGCACGGAGCCCCTTCCT-CCTCGGCCATTCCCAGTTTAGATTCCCAGGGGAAGCATCAGATGGCC--CCTCTCCCCTGCTGGCAGCAGAGCAGACGGAACCAGCCA--GAGCC----CAGGGCAGTGCTCACCTGCAGGCCAGTCCACTGCG
s panTro4.chr19                  59956655 355 +  63644993 GCTCG--ccgcaccacaccatcgcgggagacagc--agtta-ttctgagcatctcactgctgaagaaaccaaggctc-agagag--gacca-tgcatgcacaaggtcccacagGGACCCAAGAATCC-ACCAAGTGT--CAGACAACTTGCCCATGCTCTTCACGGAGCACCTTGGAACCCTCCCCGACAGGCACCGCTGGCTCTCCTGACGTGGCC-TGCAAGTGCACGGAGCTCCTTCCT-CCTCGGCCATTCCCAGTTTAGATTCCCAGGGGAAGCATCAGATGGCC--CCTCTCCCCTGCTGGCAGCAGAGCAGGCTGAACCAGCCA--GAGCC----CGGGGCAGTGCTCACCTGCAGGCCAGTCCACTGCG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904291 348 +  60714840 GCTCA--CTTCACCATACCATCGCGGGAGACAGC--AGTTA-TTCTGAGCACCTCACTGCT---GAAACCAAGGCTC-AGACAG--GACCA-TGCATACACAAGGTCCCAGAGGGACCCAAGAATCC-----AGTGT--CAGACAACTTGCCCATGCTCTTCACCGAGCACCTTGGCGCCCTCCCCCACAGGCACCGCTGGCTCTCCTGACATGGCC-CACAAGCGCACGGAGCCCCTTCCT-CCTCGGCCGTTCGCAGTTTAGATTCCCAGGGGAAGCATCAGATGGCC--CCTCTCCCCTGCTGGCAGCAGAGCAGACGGGACCAGCCA--GAGCC----CGGGGCAGTGCTCACCTGCAGGGCAGTCCACTGCG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103380004 347 - 106955855 GCTCA--CCGCACCGCACCATCACGGGAGACAGC--AGTTA-CTCTGAGCACCCCACCGCT---GAAACCAAGGCTC-AGAGAG--GACCA-CGCATGCACAAGGTCCCAGAGGGACCCAAGAATCC-----AGTGT--CAGACAACTTGCCCGTGCTCTTCACGCAGCACCTTGAAGCCCTCCCCCACCGGCACCACCGGCTCTCCTGACATGGCC-CACAAGCGCATGGAGCCCCTGCTT-CCTCGGCCATTCCCGGTTTACATTCCCAGGGGAAGCATCAGATGGCC--CCTCT-CCCTGCTGGCAGCAGAGCAGATGGGACCAGCCA--GAGCC----CAGGGCAGTGCTCACCTGCAGGCCAGTCCACTGCG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60682603 349 +  64156825 GCTCG--CTGCACcacaccatcacgggagacagc--ggtta-ttctgagcacctcaccgctgaagaaaccaaggctc-agagaa--gacccctgcatgcacaaggtcccacgggtacccaagaatcc----gagtgt------cagcttgcccatgctctttgcagagcaccttggagccctccCCCACAGGCACCGCTGGCTCTCCTGACATGGCC-CACAAGTGCATGGAGCCTGTGCCT-CCTCGGCCATTGCCAGTTTAGATTCCCAGGGGAAGCATCAGATGGCC--CCGCTCCCCTGCTGGCAGCAGAGCACATGGGACCAGCCG--GAGCC----CAGGGCAGTGGTCACCCGCGGGCCAGTCCACTGCG
i rheMac3.chr19                 I 31 C 0
s macFas5.chr19                  55824881 353 +  59248254 GCTCA--CCGCACCACACCGTCACGGGAGACAGC--GGtta-ttccgagcacctcaccgctgaagaaaccaaggctc-agagaa--gacccctgcatgcacaaggtcccacgggtaCCCAAGAATCC----GAGTGT--CAGACAGCTTGCCCATGCTCTTTGCGGAGCACCTTGGAGCCCTCCCCCACAGGCACCGCTGGCTCTCCTGACATGGCC-CACAAGTGCACGGAGCCTGTGCCT-CCTCGGCCATTGCCAGTTTAGATTCCCAGGGGAAGCGTCAGATGGCC--CCGCTCCCCTGCTGGCAGCAGAGCACATGGGACCAGCCG--GAGCC----CAGGGCAGTGGTCACCCGCGGGCCAGTCCACTGCG
i macFas5.chr19                 C 0 I 142
s papAnu2.chr19                  47932624 345 +  51301725 GCTCG--CCGCACCACACTGTCACGGGAGACAGC--GGTTA-TTCTGAAGA---AACCgttgaagaaaccaaggctc-agagaa--gaccCTTGTATGCACAAGGTCCCACGGGTACCCAAGAACCC----GAGTGT--CAGACAGCTTGCCCATGCTCTTTGCGGAGCACCCTGGAGCCCTCCCCCACAGGCACCGCTGGCTCTCCTGACATGGCC-CACAAGTACATGGAGCCTGTGCCT-CCTCGGCCATTGCCAGTTTAGATTCCCAGGGGAAGCATCAGATGGCC--CCGCTCCCGTGCTGGCAGCAGAGCACATGGGATCAGCCT--GAGCC---------CAGTGGTCACCCGCAGGCCAGTCCACTGCG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47635166 354 +  50890351 GCTCG--CCGCACCACACCGTCACGGGAGACAGC--GGTTATTTCTGAGCACCCCACCGCTGAAGAAACCAAGGCTC-AGAGAA--GACCCTTGCATGCACAAGGTCCCACAGGTACCCCAGAATCC----GAGTGT--CAGACAGCCTGCCCATGTTCTTTGCAGAGCACCCTGGAGCCCTCCCCCACAGGCACTGCTGGCTCTCCTGACATGGCC-CACAAGTACACGGAGCCTGTTCCT-TCTCAGCCATTGCCAGTTTAGATTCGCAGGGGAAGCATCAGATGGCC--CCACTCCCCTGCTGGCAGCGGAGCACATGGGACCAGCCA--GAGCC----CAGGGCAGTGGTCACCTGCAGGCCAGTCTACTGCG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     52685 356 +    138250 GCGTG--CCACACCACGCCATCACAGGAGGGAGC--AGCTG-TTCTGAGCACCTCACCGCTGGAGAAACCAAGGCTCAAGAGAG--GACCA-TGCGTGTACAACGTCCCACAGGGACCCAGGAATCC-ACCGAGTGT--CAGACACCCTGCCCATGCTCTTCACAGAGCACCTTGGAGCCCACCCCCATGGGCACCGCTGGCTCTCCTGACATCGCC-CACAAGCGCACAGAGACTGTTCCT-CCTCAGCCGTACCCAGTTTAGATTCCCAGAGGAAGTATCAGATGGCC--CTGCTCCCCTGCTGGCAGCAGAGCACACGGGACCAGCCA--GAGCC----CAGGGCAGTGCCCACCTGCAGGCCAGTCCACCGCG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20127963 353 - 122678785 Actcattcatcaccatgctgtcctgtgaggtagtcaggtta-ttctgcaca-ttcacagtgggagaaaccgaggctc-agagaggcgactg-agggtgtgcacggtcccacagggaaccatgaacctgactgggtctggcagacaactttccca------------atggccaCACAGGTCTGCACCGTGGCCACCAGTGGCCCTCCTGACACGGCCACAC-------CGGAGCGGCCTCCTCCCTCAGCGATTCCCAGTTC-CACGCTCAAGGCAGGTGTCTGACGGCCAGATGCGCACCTGCCACTGCCTGAGAAGAAAAGGGCAGCTACTGATCCCTACCAGCGTGACGTGGGCATGGCAACCAGCGTTCTTTG
i canFam3.chr1                  C 0 C 0

a score=17712.000000
s hg38.chr19_GL949751v2_alt        963289 5 +   1002683 GCCAG
s panTro4.chr19                  59957010 5 +  63644993 GCCAG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904639 5 +  60714840 GCCAG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103380351 5 - 106955855 GCCAG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60682952 5 +  64156825 GCCAG
i rheMac3.chr19                 C 0 I 145
s macFas5.chr19                  55825376 5 +  59248254 GCCAG
i macFas5.chr19                 I 142 C 0
s papAnu2.chr19                  47932969 5 +  51301725 GCCAG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47635520 5 +  50890351 GCCAG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53041 5 +    138250 ACCAG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20128316 5 - 122678785 GGCAA
i canFam3.chr1                  C 0 C 0

a score=108345.000000
s hg38.chr19_GL949751v2_alt        963294 36 +   1002683 CACCGCCCCCTAGAACCTACTGCGGGCATGGCGGCC
s panTro4.chr19                  59957015 36 +  63644993 CACCGCCCCCTAGAACCTACTGCGGGCATGGCGGCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904644 36 +  60714840 CACCGCCCCGTAGAGGACGCTGCTGGCTTGGCGGCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103380356 36 - 106955855 CACCGCCCCCTAGAGGACGCTGCGGGCATGGCGGCC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60683102 36 +  64156825 CACCGCCCCCTAGAGGATGCTGCGGGCATGGGGGCC
i rheMac3.chr19                 I 145 C 0
s macFas5.chr19                  55825381 36 +  59248254 CACCGCCCCCTAGAGGATGCTGCGGGCATGGGGGCC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47932974 36 +  51301725 CACCGCCCCCTAGAGGATGCTGCGGGCATGGGGGCC
i papAnu2.chr19                 C 0 I 467
s chlSab2.chr6                   47635525 36 +  50890351 CACCGCCCCCTAGAGGAAGCTGCGTGCATGGCGGCC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53046 36 +    138250 CAGTGCCCCCTAGAGGATGCTTCGGTTGTGGCAGCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20128321 36 - 122678785 TACTGCCTCCTAGAGGACCCTCTGGGCATGACAGCA
i canFam3.chr1                  C 0 C 0

a score=3235.000000
s hg38.chr19_GL949751v2_alt        963330 11 +   1002683 GC------------------------------------------------------------------------CAGTCCTGG
s panTro4.chr19                  59957051 11 +  63644993 GC------------------------------------------------------------------------CAGTCCTGG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904680 83 +  60714840 GCCAGTCCTGGGTCTCCCAGCTCAGGTGGTGCCAGCGCCACCCCCTAGAGGAAGCTACGGGCATGGCGGCCAGGCAGTCCTCG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103380392 11 - 106955855 GC------------------------------------------------------------------------CAGTCTTGG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60683138 11 +  64156825 ------------------------------------------------------------------------GGCAGTCTTGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55825417 11 +  59248254 ------------------------------------------------------------------------GGCAGTCTTGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47933477 11 +  51301725 ------------------------------------------------------------------------GGCAGTCCTGG
i papAnu2.chr19                 I 467 C 0
s chlSab2.chr6                   47635561 11 +  50890351 ------------------------------------------------------------------------GGCAGTCCTGG
i chlSab2.chr6                  C 0 I 424
s calJac3.chr22_GL285922_random     53082 11 +    138250 ------------------------------------------------------------------------GGCAATCCTGG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20128357 10 - 122678785 -------------------------------------------------------------------------GTAGTCTTGA
i canFam3.chr1                  C 0 C 0

a score=26820.000000
s hg38.chr19_GL949751v2_alt        963341 7 +   1002683 GTCTCCC
s panTro4.chr19                  59957062 7 +  63644993 GTCTCCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904763 7 +  60714840 GTCTCCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103380403 7 - 106955855 GTCTCCC
i nomLeu3.chr10                 C 0 I 285
s rheMac3.chr19                  60683149 7 +  64156825 GTCTCCC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55825428 7 +  59248254 GTCTCCC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47933488 7 +  51301725 GTCTCCC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47635996 7 +  50890351 GTCTCCC
i chlSab2.chr6                  I 424 C 0
s calJac3.chr22_GL285922_random     53093 7 +    138250 GTCTCCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20128367 7 - 122678785 GGCTCGC
i canFam3.chr1                  C 0 C 0

a score=1320712.000000
s hg38.chr19_GL949751v2_alt        963348 372 +   1002683 --------------GGCTCAGGTAGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCGGACAGCTGTCCTCGGTCTGGAGGCGCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGGAGGGGCTGCTCCCTCACAGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCACTTTCAGCCCAAAGCCTCCGGGCCACCTCCTCATCCTCAGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCGGAAACATCCGCCAGTTCCTCCGCCACGGCCAGGTATGTGCTGGGCTGGGCGGCCAGCTCGGGGCTCTTGACCAGCAGCCAGAAGATGGGCCCTGCAATCAGCCCACAGGGCATTTAGTCCACACTCGCTCAGAGAGA
s panTro4.chr19                  59957069 372 +  63644993 --------------GGCTCAGGTAGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCGGACAGCTGTCCTCGGTCTGGAGGCGCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGGAGGGGCTGCTCCCTCACAGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCACTTTCAGCCCAAAGCCTCTGGGCCACCTCCTCATCCTCAGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCGGAAACATCCGCCAGTTCCTCCGCCACGGCCAGGTATGTGCTGGGCTGGGCGGCCAGCTCGGGGCTCTTGACCAGCAGCCAGAAGATGGGTCCTGCAATCAGCCCACAGGGCATTTAGTCCACACTCGCTCAGAGAGA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56904770 372 +  60714840 --------------GGCTCAGGTAGTGCC--------------------------------------------AGGAAGCTGCAGGCATGGCGGACAGCTGTCCTCGGTCTTGCGGCTCCATCCCG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGGAGGGGCTGCTCCCTCACAGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCACTTTCAGCCCAAAGCCTCCGGGCCACCTCCTCATCCTCAGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAATACTTTCCCGAAACATCTGCCAGTTCCTCCGCCACGGCCAGGTATGTGCTGGGCTGGGCAGCCAGCTCGGGGCTCTTGACCAGCAGCCAGAAGATGGGCCCTGCAATTAGCCCACAGGGCATTCAGTCCACACTCGCTCAGAGAGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103380695 372 - 106955855 --------------GGCTCAGGTAGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCAGAAAGCTGTCCTCAGTCTTGCGGCTCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGGAGTGGCTGCTCCCTCACAGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCACTTTCAGCCCAAAGCCTCCGGGCCACCTCCTCATCCTCGGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCCGAAACATCTGCCAGTTCCTCCGCCACGGCCAGGTATGTGCTGGGCTGGGCAGCCAGCTCGGGGCTCTTGACCAGCAGCCAGAAGATGGGCCCTGCAATCAGCGTACAGGGCATTCAGTCCACACTCGCTCAGAGAGA
i nomLeu3.chr10                 I 285 C 0
s rheMac3.chr19                  60683156 372 +  64156825 --------------GGCTCAGGTGGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCAGACAGTGGCCCTCGGTCTTGCGGCTCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGAAGGGGCTGCTGCCTCACAGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCGCTTTCAGCCCAAAGCCTCCGGGCCACCTCCTCATCCTCAGCCTCAGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCGGAAACATCCGCCAGTTCCTCTGCCACGGCCAGGTATGTGCTGGGCTGGGCGGCCAGCTCGGGGCTCTTGACCAGCAGCCAGATGATGGGCCCTGCAATCAGCCCACAGGGCGCTCAGTCCACACACGCTCAGAGAAG
i rheMac3.chr19                 C 0 I 41
s macFas5.chr19                  55825435 372 +  59248254 --------------GGCTCAGGTGGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCAGACAGTGGCCCTCGGTCTTGCGGCTCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGAAGGGGCTGCTGCCTCACAGA---------GGGAGC---------CTCTAAGCCTACCAGGCGGGCGCTTTCAGCCCAAAGCCTCCGGGCCACCACCTCATCCTCAGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCGGAAACATCCGCCAGTTCCTCTGCCACGGCCAGGTATGTGCTGGGCTGGGCGGCCAGCTCGGGGCTCTTGACCAGCAGCCAGATGATGGGCCCTGCAATCAGCCCACAGGGCGTTCAGTCCACACACGCTCAGAGAAG
i macFas5.chr19                 C 0 I 41
s papAnu2.chr19                  47933495 370 +  51301725 --------------GGCTCAGGTGGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCAGACAGCGGCCCTCGGTCTTGTGGCTCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAAGTTATCTGGGAAGGGGCTGCTCCCTCACCGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCGCTTTCAGCCCAAAGCCTCCGGGCCACCTCCTCATCCTCAGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCGGAAACATCTGCCAGTTCCTCTGCCACGGCCAGGTATGTGCTGGGTTGGGCGGCCAGCTCGGGGCCCTTGACCAACAGCCAGAAGATGGGCCCTGCAATCAGCGCACAGGGCACTCAGTCCACACACGCTCAGAGA--
i papAnu2.chr19                 C 0 I 220
s chlSab2.chr6                   47636003 370 +  50890351 --------------GGCTCTGGTGGTGCC--------------------------------------------AGGAAGCTGCGGGCATGGCAGACAGCTGCCCTTGGTCTTGCGGCTCCATCCTG-------------------GCTTTCAAATCTGCTCCA-GAGGTTATCTGGGAAGGGGCTGCTCCCTCACAGA---------GGGAGC---------CTCTAAGCCCACCAGGCGGGCGCTTTCAGCCCAAAGCCTCCGGGCCACCTCCTCATCCTCAGCCTCGGGGGCCGGGGCCTTCTGTTTGAGTCCATCGAAGTACTTTCCGGAAACGTCCGCCAGTTCCTCTGCCACAGCCAGGTATGTGCTGGGCTGGGCGGCCAGCTCGGGGCTCTTGACCAGAAGCCAGAAGATGGGCCCTGCAATCAGCGCACAGGGCACTCAGTCCACACACGCTCAGAGA--
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53100 394 +    138250 --------------GGCTCAGGTGGTGCC-----------------------------AACACCGCCCCCTAGAGGATGCTGTGGGTGTGGCGGACAGCGGTGCTCGGTCTCGTGGCTCCATCCTGGAGC-CTGTCTTCATCCTCGCTTTCAAATCTCCTTCC-GAGGTTATCTGGGAAGGGGCTGCTCCCTCACAGAGGACACATGGGACGC---------CTCCAAGCCCACCAGGCGCGCACTTTCAGCCCAAAGCCGCCGGGCCACCTCCTCATCCTCAGCCTCGGGGGCTGGGGCCTTCTGTTTGAGTCCATCAAAGTACTTTCCGGAAACATCCGCCAGTTCCTCCGCCACGGCCAGGTATGTACTGGGCTGGGCAGCCAGCTCGGGGCTCTTGACCAGCAGCCAGAAGATGGGTCCTGCAATCAGC----------------CCACACACACTCAGA----
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20128374 459 - 122678785 ACAAACTACACTGCCACCTAGAGGGTGACGTGGGCATCTCGGTCAGCGTTCCGTGGGCAACACTGCCACCCAGAGGACGCTGCAGACAGAGCAGCCAGCTTGGGTTGGCCTTGCGGCTCCATCCTGGTACTCCGCCTCCCACGTGGTTTTCACACCTGCTCCCTGAGATTATTTAGGGAGGGGCTGCCCCCTCACTGA---------GGAAACACCTGACATCTCCAAGCCCACCAAGCGGGCACTTTCAGCCCAAAGCCTCTGGGCTACCTCTTCATCCTCAGCTTCCGGGGCTGGAGCCTTCTCTTTGAGTCCATCAAAGTACTTTCCAGAAACACCCTCCAATTCCTCTGCCACGGCCAGGTACGTGCTGGGCTGGGCTGCCAGCTGGGGGCTCTTGACCAACAGCCAGAAGATGGGCCCTGCAATCAGCCCACAGAGCATTCAGTCCACACACGTTCAGGGAGG
i canFam3.chr1                  C 0 C 0

a score=842802.000000
s hg38.chr19_GL949751v2_alt        963720 291 +   1002683 --AGGAAGGAAGCCCCGCTCCCCGGTCAG----------------------GGAGCTCCGGGTCC----------CTGGAGTCCCACAGAGccctcctctagccctttcccctt--ggctgcctccatctgcagttcccttccctggcactgcccaggcaaatcccaccagac-cagggatcagaccaaaagctgcctcccccaaggagccttcctggctttg-tccaggaaaatggaagctctcttcctcttggtcagcccc-agtcctcaccctaccccatttctc------------ctt-taataac---at---cttattaaatgCACCTGGCACCAGCCTCAG
s panTro4.chr19                  59957441 303 +  63644993 --AGGAAGGAAGCCCCGCTCCCCGGTCAG----------------------GGAGCTCCGGGTCC----------CTGGAGTCCCACAGAGccctcctctagccctttcccctt--ggctgcctccatctgcagttcccttccctggcactgcccaggcaaatcccaccagac-cagggatcagaccaaaagctgcctcccccaaggagccttcctggctttg-tccaggaaaatggaagctctcttcctcctggtcagtccc-agtcctcaccctaccCCATTTCTCcttaaataacatctt-aaataac---at---cttaTTAAATGCACCTGGCACCAGCCTCAG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905142 272 +  60714840 --AGGGAGGA-------------------------------------------AGCTCCGGGCCC----------CTGGAGTCCCACAGAGccctcctctagccctttcccctt--ggctgcctccatctgcagttcccttccttggcactgcccaggcaaatcccaccagac-cagggatcagaccaaaagctgcctaccccaaggagccttcctggctttg-tccaggaaaatggaagctctcctcctcctggtcagcccc-agtcctcatcctaccCCATTTCTC------------CTT-AAATAAC-TTAA---CTTATTAAATGCACCTGGCACCAGCCTCAG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103381067 283 - 106955855 --AGGGAGGAAGCCCCACTCCCCCATCAG----------------------GGAGCTCCAGGCCC----------CTGGAGTCCCACAGAGccctcctctagccctttcccctt--ggctgcctccatctgcagttcccttccctggcactgcccaggcaaatcccaccggac-cagggatcagaccaaaagctgcctcccccaagaagccttcctggctttg-tccaggaaaatggaagctc---tcctcctggtcagcccc-agtcctcaccctaccCCATTTCTC------------CTT-AAATAAC-TTAT---CTTATTAAAT-------GCACCAGCCTCAG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60683569 287 +  64156825 --AGCGAGGAAGCCCCACTCCCCCGTCAG----------------------GGAGCTCCGGGCCC----------CTGGAGTCCCACAGAGccctcctccagccccttcccctt--ggctccctccatctgcagttcccttccctggcactgcccaggctaatccctccagac-cagggatcagaccagaaactgcctcccccaaggagccctcctggctttg-tccaggaaaatggaagctgtcctcctctt----agcccc-agtcctcaccctatcccatttctc------------ctt-aaataac---tt---cttattaaATGCACCTAGCACCAGCCTCAG
i rheMac3.chr19                 I 41 C 0
s macFas5.chr19                  55825848 287 +  59248254 --AGCGAGGAAGCCCCACTCCCCCGTCAG----------------------GGAGCTCCGGGCCC----------CTGGAGTCCCACAGAGCCCTCCTCCAGCCCCTTCCCCTT--GGCTCCCTCCATCTGCAGTTCCCTTCCCTGGCACTGCCCAGGCTAATCCCTCCAGAC-CAGGGATCAGACCAGAAACTGCCTCCCCCAAGGAGCCCTCCTGGCTTTG-TCCAGGAAAATGGAAGCTCTCCTCCTCTT----AGCCCC-AGTCCTCACCCTATCCCATTTCTC------------CTT-AAATAAC---TT---CTTATTAAATGCACCTAGCACCAGCCTCAG
i macFas5.chr19                 I 41 C 0
s papAnu2.chr19                  47934085 284 +  51301725 --AGCAAGGAAGCCCCACTCCCCCGTCAG----------------------GGAGCTCCGGGCCC----------CTGGAGTCCCACAGagccctcctccagccccttcccCTT--GGCTCCCTCCATCTGCAGTTCCCTTCCCTGGCACTGCCCAGGCTAATCCCTCCAGAC-CAGGGATCAGACCAGAAGCTGCCTCCCCCAAGGAGCCCTCCTGGCTTTG-TCCAGGAAAATGGAAGCTCTCCTCCTCTT----AGCCCC-AGTCCTCACCCTACCCCATTTCTC------------CTT-AAATAA---------CTTACTAAATGCACCTAGCACCAGCCTCag
i papAnu2.chr19                 I 220 C 0
s chlSab2.chr6                   47636373 278 +  50890351 --AGTGAGGAAGCCCCACAACCCCGTCAA----------------------GGAGCTCCGGGCCC----------CTAGAGTCCCACAGAGCCCTCCTCCAGCCCCTTCCCTTT--GGCTGCCTCCATCTGTAGTTCCCTTCCCTGGCACTGCCCAGGCTAATCCCT-------------TCAGACCAGAAGCTGCCTCCCCCAAGGAGCCCTCCTGGCTTTG-TCCAGGAAAATGGAAGCTCTCCTCCTCTT----AGCCCT-AGTCCTCACCCTACCCCATTTCTC------------CTT-AAATAAC---TTACACTTATTAAATGCACCTAGCACCAGCCTCAG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53494 270 +    138250 --AGTCAGGAAGCCCCACTCCCCCATCAG----------------------GGAGCTCCAGGCCC----------CTGGAGTCCCACAGAGCCCTCCTCCAGCCCCTTACCCTT--GGCT---CCCATCTGCAGTTCCCTTCCCTGGTACCGCCCTGGCAAATCCCTCCCGAC-CAGGGGTCACGCCAAAAGCTGCCT-CCCTAAGAAGCCTTCCTGGCTTTG-CCCGGGAAAATGAAAGCTCTCCTCCT--TGGTCAGCCCC-AGTATTCACCCTACCCCATTTCTC-------------------------------CT---TAAATGCACCTGGCACCAGCCTCAG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20128833 324 - 122678785 AGGACATGAACACCCTACTCTCCCCCCAACACCCCCACCCCAGGGTTGCCTGGGGCCCAGAGGCCAGAGGTGACACTGCAGTCCCACACAGcccacctccaggcctgtgcctctgaggttccctccaccaggagctcctttccctggcactgcccagccaaatccctccagacatagagaccagcccaaatggggcctcttccagcaagcctccccagcttttccccaggcaaatggaggctc----------agtcatctctgagtccttaccctatcccaccttgc------------tttaaaatagctttta---tttattaaatgtctCTGGGGCCAGGCTCAG
i canFam3.chr1                  C 0 C 0

a score=26811.000000
s hg38.chr19_GL949751v2_alt        964011 17 +   1002683 GTTAAGGA-----TCTTTTTTT
s panTro4.chr19                  59957744 18 +  63644993 GTTAAGGA----TTTTTTTTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905414 19 +  60714840 GTTAAGGA---TTTTTTTTTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103381350 16 - 106955855 GTTAAGGA------TTTTTTCT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60683856 22 +  64156825 GTTAAGAAtttttttttttttt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55826135 18 +  59248254 GTTAAGAA----TTTTTTTTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47934369 21 +  51301725 gttaataa-ttttttttttttt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47636651 20 +  50890351 GTTAGGAA-TTTTTTTTTTTT-
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53764 22 +    138250 GTTAATTTTTGTTTCTTTTTTT
i calJac3.chr22_GL285922_random C 0 I 144
e canFam3.chr1                   20129157  0 - 122678785 C

a score=305729.000000
s hg38.chr19_GL949751v2_alt        964028 134 +   1002683 ggccaggcgaggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggcggattacctggggtcgggagttccagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaat
s panTro4.chr19                  59957762 134 +  63644993 ggccaggcgaggtggctcaggcctgtaatcccagcacttcgggaggccgaggtgggcggatcacctagggtcgggagttccagaccagcctggccgacatggtgaaaccccatttctactaaaaatacaaaaat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905433 134 +  60714840 ggccaggcgaggtggctcaggcctgtaatctcagcacttcgggaggctgaggcgggcggataacctggggtcgggagttccagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103381366 134 - 106955855 ggccaggcgaggtggctcaggcctgcaattctaccactttgggaggccgaggcgggtggattacctggggtcgggagttccagaccagcctggccaacatggtgaaaccccatttctattaaaaatacaaaaat
i nomLeu3.chr10                 C 0 M 115
s rheMac3.chr19                  60683878 134 +  64156825 ggccaggcgaggtggctcaggcctgtaatcacagcacattgggaggccgaggcaggcggatcgcctggggtcaggacttccagaccaccctcgccaacatgatgataccccatttctactaaaaatacaaaact
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55826153 134 +  59248254 ggccaggcgaggtggctcaggcctgtaatcacagcacattgggaggccgaggcaggcggatcgcctggggtcaggacttccagaccaccctcgccaacatgatgataccccatttctactaaaaatacaaaact
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47934390 133 +  51301725 ggccaggcaaggtggctcaggcctgtaatcacagcacattgggaggccgaggcaggcggatcgcctggggtcaggacttccagaccagcctggtcaacatgatgaaaccccatttctact-aaaatacaaaatt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47636671 129 +  50890351 -----ggcgaggtggctcaggcctgtaatcccagcacattgggaggccgaggcaggcggatcgcctggggtcaggacttccagaccagcctggtcaacatgatgaaaccccatttctactaaaaatacaaaaat
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20129157   0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=80001.000000
s hg38.chr19_GL949751v2_alt        964162 50 +   1002683 taact-gggtgtggtggcgggtgcctgtaatcccagctgctcgggaggctg
s panTro4.chr19                  59957896 50 +  63644993 taact-gggtgtggtggcgggtgcctgtaatcccagctgctcgggaggctg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905567 50 +  60714840 taact-gggtgtggtggcgggtgcctgtaatcccagctgctcgggaggctg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60684012 50 +  64156825 tagcc-aggcatggtggtgggtgcctgtaatcccagctgcttgggaggctg
i rheMac3.chr19                 C 0 I 597
s macFas5.chr19                  55826287 49 +  59248254 tagcc-aggcatggtggtgggtgcctgtaatcccagctgcttgggaggct-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47934523 51 +  51301725 aagcctgggcgtggtggtgggtgcctgtaagcccagctgtttgggaggctg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47636800 50 +  50890351 tagct-gggcttggtggtgggtgcctgtaatcccagctgcttgggagcctg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20129157  0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e nomLeu3.chr10                 103381500 115 - 106955855 M

a score=105409.000000
s hg38.chr19_GL949751v2_alt        964212 106 +   1002683 gggcaggagaatcccttgaacctgggaggcggaggttgcagtgagctaagatcacaccattgcactccagcctgggtgacaatagcaagacttcgtctcaaaaaaa
s panTro4.chr19                  59957946 102 +  63644993 gggcaggagaatcccttgaacctgggaggtggaggttgcagtgagctaagatcacaccattgcactccagcctgggtgacaatagcaagacttcgtctc----aaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905617  99 +  60714840 gggcaggagaatcccttgaacttgggaggcagaggttgcagtgagctgagatcacactattgcactccagcctgggtgacaatagcaagactttgtctc-------
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55826336  75 +  59248254 -------------------------------aaggttgcagtgagccaaggtcgcaccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaaaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47934574 106 +  51301725 aggcaggagaatcccttgaacccaggaggcggaggttgcagtgagccaaggtcgcaccattgcactccagcctgggtgacaagagcaaaactccatctcaaaaaaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47636850 106 +  50890351 aggcaggagaatcccttgaacccaggaggcggaggttgcagcgagccaagatcgtgccattgcactccagcctgggtgacaagagcaaaattccatctcaaaaaaa
i chlSab2.chr6                  C 0 I 477
e canFam3.chr1                   20129157   0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e nomLeu3.chr10                 103381500 115 - 106955855 M
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=1018.000000
s hg38.chr19_GL949751v2_alt        964318 3 +   1002683 aaa
s panTro4.chr19                  59958048 3 +  63644993 aaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905716 3 +  60714840 aaa
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55826411 3 +  59248254 ata
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47934680 3 +  51301725 taa
i papAnu2.chr19                 C 0 I 400
e canFam3.chr1                   20129157 0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e nomLeu3.chr10                 103381500 115 - 106955855 M
e chlSab2.chr6                   47636956 477 +  50890351 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt        964321 1 +   1002683 a
s panTro4.chr19                  59958051 1 +  63644993 a
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905719 1 +  60714840 a
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55826414 1 +  59248254 a
i macFas5.chr19                 C 0 I 385
e canFam3.chr1                   20129157 0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e nomLeu3.chr10                 103381500 115 - 106955855 M
e chlSab2.chr6                   47636956 477 +  50890351 I
e papAnu2.chr19                  47934683 400 +  51301725 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=9658.000000
s hg38.chr19_GL949751v2_alt        964322 38 +   1002683 aaaaaaaGggctgggcgtggtgactcacgcctgtaatc
s panTro4.chr19                  59958052 38 +  63644993 aaaaGGGGggctgggtgtggtgactcacgcctgtaatc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56905720 38 +  60714840 aaaaaaGGGGCTGGGTGTGATGACTCACGCCTGTAATC
i ponAbe2.chr19                 C 0 M 596
e canFam3.chr1                   20129157  0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e nomLeu3.chr10                 103381500 115 - 106955855 M
e chlSab2.chr6                   47636956 477 +  50890351 I
e papAnu2.chr19                  47934683 400 +  51301725 I
e macFas5.chr19                  55826415 385 +  59248254 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=29844.000000
s hg38.chr19_GL949751v2_alt        964360 348 +   1002683 ccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacgtgtgaaaccctgtctcaactaaaaataaaaacttagctgggtgtggtggtgggcgcctgcaatctcagctactttgggaggctgagacaggagaatcacttgaaccgaggaggcagaggttggagtgagccaagattgtgccactgcactccagcctgggtgac--gagcaaaactccgtctc--aaaaaaaaaaagaCAtttatttatttatttattgagacctggtgtcttgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaa
s panTro4.chr19                  59958090 344 +  63644993 ccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacgtgtgaaaccctgtctcaactaaaaataaaaacttagctgggtgtggtggtgggcgcctgcaatctcagctactttgggaggctgagacaggagaatcacttgaaccgaggaggcagaggttggagtgagccaagattgtgccactgcactccagcctgggtgacaagagcaaaactccgtctcaaaaaaaaaaaaagacattta-------atttattgaaacctggtgtcttgctctgtca-ccaggctggagtgcagtggcgctatctcggctcactgcaa
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20129157   0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e nomLeu3.chr10                 103381500 115 - 106955855 M
e chlSab2.chr6                   47636956 477 +  50890351 I
e papAnu2.chr19                  47934683 400 +  51301725 I
e macFas5.chr19                  55826415 385 +  59248254 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=1522.000000
s hg38.chr19_GL949751v2_alt        964708 7 +   1002683 cctctgc
s panTro4.chr19                  59958434 7 +  63644993 cctctgc
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103381619 7 - 106955855 cttttgc
i nomLeu3.chr10                 M 115 C 0
e canFam3.chr1                   20129157 0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e chlSab2.chr6                   47636956 477 +  50890351 I
e papAnu2.chr19                  47934683 400 +  51301725 I
e macFas5.chr19                  55826415 385 +  59248254 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=7006.000000
s hg38.chr19_GL949751v2_alt        964715 11 +   1002683 ctcccgggttc
s panTro4.chr19                  59958441 11 +  63644993 ctccctggttc
i panTro4.chr19                 C 0 I 472
s nomLeu3.chr10                 103381626 11 - 106955855 ctcccgggttc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55826800 11 +  59248254 ctcccgacctc
i macFas5.chr19                 I 385 C 0
s papAnu2.chr19                  47935083 11 +  51301725 ctcccgacctc
i papAnu2.chr19                 I 400 C 0
e canFam3.chr1                   20129157  0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e chlSab2.chr6                   47636956 477 +  50890351 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=20659.000000
s hg38.chr19_GL949751v2_alt        964726 65 +   1002683 aagcgattctcctgcctcagcctcctgagtagctgggactacaggtgcacaccaccacacctggc
s nomLeu3.chr10                 103381637 65 - 106955855 aagagattctcctatctcagcttcctgcgtagctgggagttcaggtgcacgccaccacgcctggc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55826811 65 +  59248254 aggtgatctgcccgccttggcctcccaaagtgctgagattacagatgtgagccatcccgcccagc
i macFas5.chr19                 C 0 I 2
s papAnu2.chr19                  47935094 65 +  51301725 aggtgatctgcccgcctcggcctcccaaagtgctgagattacagatgtgagccatcacgcccagc
i papAnu2.chr19                 C 0 I 2
e canFam3.chr1                   20129157  0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e chlSab2.chr6                   47636956 477 +  50890351 I
e rheMac3.chr19                  60684062 597 +  64156825 I
e panTro4.chr19                  59958452 472 +  63644993 I

a score=18522.000000
s hg38.chr19_GL949751v2_alt        964791 25 +   1002683 taatttttgtatttttagtagagac
s nomLeu3.chr10                 103381702 25 - 106955855 taatttttgtatttttagtagagac
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55826878 25 +  59248254 taatttttgtatttttaatagagat
i macFas5.chr19                 I 2 C 0
s papAnu2.chr19                  47935161 22 +  51301725 taatttttgta---ttaatagagat
i papAnu2.chr19                 I 2 C 0
s chlSab2.chr6                   47637433 25 +  50890351 taatttttgtatttttaatagagat
i chlSab2.chr6                  I 477 C 0
e canFam3.chr1                   20129157  0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e rheMac3.chr19                  60684062 597 +  64156825 I
e panTro4.chr19                  59958452 472 +  63644993 I

a score=4500.000000
s hg38.chr19_GL949751v2_alt        964816 3 +   1002683 ggg
s panTro4.chr19                  59958924 3 +  63644993 ggg
i panTro4.chr19                 I 472 C 0
s nomLeu3.chr10                 103381727 3 - 106955855 ggg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55826903 3 +  59248254 ggg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47935183 3 +  51301725 ggg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637458 3 +  50890351 ggg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20129157 0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I
e rheMac3.chr19                  60684062 597 +  64156825 I

a score=104145.000000
s hg38.chr19_GL949751v2_alt        964819 61 +   1002683 gtttcaccatggtggccaggctggtctcgaactcctgacctgaggtaatccgcccaccaca
s panTro4.chr19                  59958927 61 +  63644993 gtttcaccatattggtcaggctagtctcaaactcctgacctcaggtgatccaactgcctct
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103381730 61 - 106955855 gtttcaccatggtggccaggctggtctcgaactcctgacctgaggtaatctgcccaccaca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60684659 61 +  64156825 gtttccccatggtggccaggctggtctcgaactcctgacctgaggtaatctgcctgccaca
i rheMac3.chr19                 I 597 C 0
s macFas5.chr19                  55826906 61 +  59248254 gtttcaccatggtggccaggctggtctcgaactcctgacctgaggtaatccgcctgccaca
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47935186 61 +  51301725 gtttcaccatggtggccaggctggtctcgaactcctgacctgaggtaatccgcctgccaca
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637461 61 +  50890351 gtttatccatggtggccaggctggtctcgaacccctgacctgaggtaatccgcctgccaca
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20129157  0 - 122678785 C
e ponAbe2.chr19                  56905758 596 +  60714840 M
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=109965.000000
s hg38.chr19_GL949751v2_alt        964880 47 +   1002683 gcctcccaaagtgctgggattacaggcgtgGCTATTAGCCTCGCCAA
s panTro4.chr19                  59958988 47 +  63644993 gcctcccaaagtgctgggattacaggcgtgGCTATTAGTCTCGCCAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906354 47 +  60714840 GCCTCCCAAAGTCCTGGTATTACAGGCGTGGCTATTAGCCTCGCCAA
i ponAbe2.chr19                 M 596 C 0
s nomLeu3.chr10                 103381791 47 - 106955855 gcctcccaaagtgcagggattacaggcgtgGCTATTAGCCTCGCCAA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60684720 47 +  64156825 gcctcccacagtgctgggattacaggcatggctattagcctggccAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55826967 47 +  59248254 gcctcccacagtgctgggattacaggcatgGCTATTAGCCTGGCCAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47935247 47 +  51301725 gcctcccgcagtgctgggattacaggcatggctaTTAGCCTGGCCAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637522 47 +  50890351 gcctcccgaagcgctgggattacaggcatgGCTATTAGCCTGGCCAA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20129157  0 - 122678785 C
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=202761.000000
s hg38.chr19_GL949751v2_alt        964927 70 +   1002683 GTTAAGATTCTTGATGCCAACCAATCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTCATAAAGC
s panTro4.chr19                  59959035 70 +  63644993 GTTAAGATTCTTGATGCCAACCAATCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTTATAAAGC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906401 70 +  60714840 GTTAAGATTCCTGATGCCAACCACTCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTTATAAAGC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103381838 70 - 106955855 GTTAAGATTCTTGATGCCAACCAATCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTTATAAAGC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60684767 70 +  64156825 GTTAAGATTCTTGATGCCAACCACTCACCCACTCCATGTTTTTCAGGATTATAAAACCTAGTTATAAAGC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55827014 70 +  59248254 GTTAAGATTCTTGATGCCAACCACTCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTTATAAAGC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47935294 70 +  51301725 GTTAAGATTCTTGATGCCAACCACTCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTTATAAAGC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637569 70 +  50890351 GTTAAGATTCTTGATACCAACCACTCACCCACTCCATGTTTTTCAGGATTATAAACACTAGTTATAAAGC
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20129157 70 - 122678785 CTTAAAATCCTTGCTATCTGGCAACCACCCAGTAAATGATTTTCAGGATTACAAATACTAGTTCTAAAGT
i canFam3.chr1                  C 0 I 252
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=593852.000000
s hg38.chr19_GL949751v2_alt        964997 247 +   1002683 ATGAACTGCctgggggt--ggtggctcacacctgtaatcccagcactttgggaggcag------ttggatcacctgaggtcaggagtttgagactagcctgaccaatatggtgaaaccccacctc------------------tagctgggtgtggtggtgtgcacctgtaatcccagctacttggagacaggagaatcgcttgaacctgggaggtggaagttgcagtgagtggagatcatgccattgtactccagcctgggcgacagagcaa
s panTro4.chr19                  59959105 253 +  63644993 ATGAACTGCCTAggggt--ggtggctcacgcctgtaatcccagcactttgggaggcagaggcagttggatcacctgaggtcaggagtttgagactagcctgaccaatatggtgaaaccccacctc------------------tagctgggcgtggtggtgtgcacctgtaatcccagctacttggagacaggagaatcgcttgaacctgggaggtggaagttgcaatgagtggagatcatgccattgtactccaccctgggcaacagagcaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906471 255 +  60714840 TTGAACTGGCTGGgggtgaggtggctcacacctgtaatcccagcactctgggaggccgaggcagttggatcacctgaggtcaggagttcgagaccagcctgaccaatatggtgaaaccccacctc------------------tagctgggcgtggtggtgtgcacctgtaatcccagctacttggagacaggagaatcacttgaacctgggaggtggaagttgcagtgagtgcagatcatgccattgtactccagcctgggtgacagagcaa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103381908 253 - 106955855 TTGAACTggctggaggt--ggtggctcgcgcctgtaatcccagcactatgggaggctgaggcagttggatcacttgaggtcaggagttcgagaccagcctgaccaatatggtgaaaccccacctc------------------tagctgggcgtggtggtgtgcacctgtaatcccagctacttggagacaggagaatcgcttgaacctgggaggtggaagttgcagtgagtggagatcatgccattgtactccagcccgggcgacagagcaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60684837 271 +  64156825 TTCAACTggctgggggt--ggtggctcacgcctgtaatctcagcactttgggaggctgaggcaggtggaccacctgaggtcaggagttcaagaccagcctgaccaatatggtgaaaccccacctctactaaaaataccaaaattagctgggtgtggtggtgtgcacctgtaatcccagctacttggagacaggagaatcgcttgaacctaggaggtggaagttgcagtgagtcaagatcgtgcccttgtagtcaagcctgggtgacagagcaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55827084 271 +  59248254 TTCAACTggctgggggt--ggtggctcacgcctgtaatctcagcactttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctgaccaatatggtgaaaccccacctctactaaaaataccaaaattagctgggcgtggtggtgtgcacctgtaaccccagctacttggagacaggagaatcgcttgaacctaggaggtggaagttgcaatgagtcaagatcgtgccattgtagtcaagcctgggtgacagagcaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47935364 271 +  51301725 TTCAactggctgggggt--ggtggctcaggcctgtaatctcagcactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgagaccagcctgaccaatatggtgaaaccccacctctactaaaaataccaaaattagctgggcatggtggtgtgcacctgtaaccccagctacttggagacaggagaatcgcttgaacctaggaggtggaagttgcaatgagtcaaCATCGTGCCATTGTagtcaagcctgggtgacagagcaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637639 271 +  50890351 TTGAACTggctgggggt--ggtggctcatacctgtaatctcagcactttgggaggctgaggcaggtggatcaccagaggtcaggagttcgagaccagcctgaccaatatggtgaaaccccacctctactaaaaataccaaaattagctgggcgtggtggtgtgtacctgtaatcccagctacttggagacaggagaatcacttgaacctaggagttggaagttgcagtgagtcaagatcgtgccattgtagtcaagcctgggtgacagagcaa
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20129227 252 - 122678785 I
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=45888.000000
s hg38.chr19_GL949751v2_alt        965244 20 +   1002683 gacttcatctcaaaaataaG
s panTro4.chr19                  59959358 20 +  63644993 gacttcatctcaaaaataaG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906726 20 +  60714840 gacttgatctcaaaaataaG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382161 20 - 106955855 gacttcatctcaaaaataaG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685108 20 +  64156825 gacttcatctcaaaaatata
i rheMac3.chr19                 C 0 I 4
s macFas5.chr19                  55827355 18 +  59248254 gacttcatctcaaaaata--
i macFas5.chr19                 C 0 I 3
s papAnu2.chr19                  47935635 20 +  51301725 gacttcatctcaaaaatata
i papAnu2.chr19                 C 0 I 341
s chlSab2.chr6                   47637910 20 +  50890351 gacttcatctcaaaaataaa
i chlSab2.chr6                  C 0 I 1
s canFam3.chr1                   20129479 20 - 122678785 ttttttatattaaaaaaaaA
i canFam3.chr1                  I 252 C 0
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=7874.000000
s hg38.chr19_GL949751v2_alt        965264 5 +   1002683 -TAagt
s panTro4.chr19                  59959378 5 +  63644993 -TAagt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906746 5 +  60714840 -TAagt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382181 5 - 106955855 -TAagt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685132 5 +  64156825 -taaat
i rheMac3.chr19                 I 4 C 0
s macFas5.chr19                  55827376 5 +  59248254 -taaat
i macFas5.chr19                 I 3 C 0
s papAnu2.chr19                  47935996 5 +  51301725 -taaat
i papAnu2.chr19                 I 341 C 0
s chlSab2.chr6                   47637931 5 +  50890351 -taaat
i chlSab2.chr6                  I 1 C 0
s canFam3.chr1                   20129499 5 - 122678785 AAAAA-
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     53786 144 +    138250 I

a score=136968.000000
s hg38.chr19_GL949751v2_alt        965269 49 +   1002683 aaagctccaactgtttgttccacctattctctgggcggggtcctgtgct
s panTro4.chr19                  59959383 49 +  63644993 aaagctccaactgtttgttccacctattctctgggcagggtcctgtgct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906751 49 +  60714840 aaagctccaactgtttattccacctattctctgggtggtgtactgtgct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382186 49 - 106955855 aaagctccaactgtttgttccacctattctctgggcagggtactgtgct
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685137 49 +  64156825 aaaGCTccaactgtttattccgcctgttctctgggcagggcactgtgct
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55827381 49 +  59248254 aaaGCTCCAACTGTTTATTCCGCCTGTTCTCTGGGCAGGGCACTGTGCT
i macFas5.chr19                 C 0 I 471
s papAnu2.chr19                  47936001 49 +  51301725 aaagctccaACTGTTCATTCCGCCTGTTCTCTGGGTGGGGCACTGTGCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637936 49 +  50890351 aaaGCTCCAactgtgtattccgcctgttctctgggcagggcactgtgct
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53930 49 +    138250 aaggCTGCAACTGTTTATACAGCCTATTCTCTGGGTGGGTCACGGTGCT
i calJac3.chr22_GL285922_random I 144 C 0
s canFam3.chr1                   20129504 22 - 122678785 AAAGCT---------------------------Ggtcaggccctgggct
i canFam3.chr1                  C 0 C 0

a score=2552.000000
s hg38.chr19_GL949751v2_alt        965318 1 +   1002683 g
s panTro4.chr19                  59959432 1 +  63644993 g
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906800 1 +  60714840 g
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382235 1 - 106955855 g
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685186 1 +  64156825 a
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47936050 1 +  51301725 G
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637985 1 +  50890351 g
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53979 1 +    138250 G
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20129526 1 - 122678785 g
i canFam3.chr1                  C 0 C 0
e macFas5.chr19                  55827430 471 +  59248254 I

a score=1049056.000000
s hg38.chr19_GL949751v2_alt        965319 354 +   1002683 gccctttcaaggaaggtctcgtataacccccccagtgactgtgaggtgagtcctattaaggcctgcactctgcagatgaagaaac--aggct-------------------cagaggggtaacagctcttccccaggaggtgcagctggtttggggtgaagctggagttaccctgagtacagcctgactccaGGCGTCAGCTCCACGGCCTCTTCCTCTGAGACACGGTTTTCTCATCCGCCAGCAGGGCTCT-GCCTGCTTCCCGGGGCTGTTA-GAGGCTGGCAGGCCAGGTCAACGGAGGAAAGGGACCTGTGCTCTGTGCCTCAGAAGACGTAGGCGAGGAGCAGGCATGAGGCCTCAGGGACGGTCTCTGAG
s panTro4.chr19                  59959433 354 +  63644993 gccctttcaaggaaggtctcgtataacccccccagtgactgtgaggtgagtcctattaaggcctccactctgcagatgaagaaac--aggct-------------------cagaggggtaacagctcttccccaggaggtacagctggtttggggtgaagctggagttaccctgagcacagcctgactccaggcgtcagctccacggcctcttcctctgAGACACGGTTTTCTCATCCGCCAGCGGGGCTCT-GCCTGCTTCCCGGGGCTGTTA-GAGGCTGGCAGGCCAGGTCGACGGAGGAAAGGGACCTGTGCTCTGTGCCTTGGAAGACGTAGGCAAGGAGCAGGCATGAGGTCTCAGGGACCGTCTCTGAG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56906801 354 +  60714840 gcgctttcaaggaaggtctcgtctaaccatcccactgactgtgaggtgagtcctattaaggcctccactctgcagatgaagaaac--aggct-------------------cagaggggtaacagctcttccccaggaggcgtagctggtttggggtgaagctggagttaccctgagcacagcctgactccaGGAGTCAGCTCCACAGCCTCTTCCTGTGAGACACGGTTTTCTCATCAGCCAGAGGGCCTCT-GCCTACTTCCCGGGGCTGTTA-GAGGCTGGCAGGCCAGGTCGACAGAGGAAAGGGACCTGTGCTCTGTGCCTCAGAAGACACAGGCGAGAAGCAGGCATGAGGCCTCAGGGACCGTCTCTGAG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382236 353 - 106955855 gccctttcaaggacggtctcgtctaaccctcccagtgactgcgaggtaagtcctattaaggcctactctctgcagaggaagaaac--aggct-------------------cagaggggtaacagctcttccccaggaggcgcagct-gtttggggtgaagctggagttacgctgagcacagcctgactctaGGAGTCAGCTCCACGGCCTCTTCCTCTGAGACACGGTTTTCTCATCTGCCAGCGGGGCTCT-GCCTGCTTCCCGGGGCTGTTA-GAGGCTGGCAGGCCAGGTCGACAGAGGAAAAGGACCTGTGCTCTGTGCCTCGGAAGATGCAGGTGAGGAGCAGGCATGAGGCCTCAGGGACTGTCTCTGAG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685187 352 +  64156825 gcccttttaaggaaggtcttgtctaaccctcccagtgcctgtgaggtgagtcctgttatggcctccactctgcagatgaagaaac--aggct-------------------cagaggggtaacagcacttccccaggaggcgcggctggtttggggtgaagctggagttaccctgaacacagtctgactccaggagtcagtTCCACGGCCTCTTCCTCTGAGACACGGTTTTCTCATCGGCCAGCTGGTCTCT-GCCTGCTTCCTGAGGCTATTA-GAGGTTGGCAGGCCAGGTCGACAGAGGAAAGGGACCCGT--CCTGTGCCTCAGAAGACACAGGTGAGGAGCAGGCATGCGGCCCCAGGGACCGTCTCTGAG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55827901 351 +  59248254 GCCCTTTTAAGGAAGGtcttgtctaaccctcccagtgcctgtgaggtgagtcctgttatggcctccactctgccgatgaagaaac--aggct-------------------cagaggggtaacagcacttccccaggaggcgcggctggtttggggtgaagctggagttaccctgagcacagtctgactccaggagtcagttccacggcctc-tcctctgagacacgctTTTCTCATCGGCCAGCTGGTCTCT-GCCTGCTTCCTGAGGCTGTTA-GAGGTTGGCAGGCCAGGTCGACAGAGGAAAGGGACCCGT--CCTGTGCCTCAGAAGACACAGGCGAGGAGCAGGCATGCGGCCCCAGGGACCGTCTCTGAG
i macFas5.chr19                 I 471 C 0
s papAnu2.chr19                  47936051 351 +  51301725 GCCCTTTTAAGGAAGGTCTTGTCTAACCCTCCCAGTGCCTGTGAGGTGAGTCCTGTTATGGCCTCCACtctgcagatgaagaaac--aggct-------------------cagaggggTAACAGCACTT-CCCAGGAGGCGCGGCTGGTTTGGGGTGAAGCTGGAGTTACCCTGAGCACAGCCTGACTCCAGGAGTCAGCTCCACGGCCTCTTCCTCTGAGACACGGTTTTCTCATCGGCCAGTGGGGCTCT-GCCTGCTTCCTGAGGCTGTTA-GAGGCTGGCAGGCCAGGTCGACAGAGGAAAGGGACCCGT--CCTGTGCCTCAGAAGACACAGGCGAGGAGCAGGCATGCGGCCCCAGGGACCGTCTCTGAG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47637986 352 +  50890351 gcccttttaaggaaggtcttgtctaaccctcccagtgcctgtgaggtgagtcctgttatggcctccactctgccgatgaagaaac--aggct-------------------cagaggtgtaacagcacttccccaggaggcgtggctggtttggggtgaagctggagttaccctgagcacagcctgactccaGGAGTCAGCTCCACGGCCTCTTCCTCTGAGACACGGTTTTCTCATCGGCCAGTGGGGCTCT-GCCTGCTTCCTGAGGCTGACA-GAGGTTGGCAGGCCAGGTCGACAGAGGAAAGGGACCCGT--CCTGTGCCTCAGAAGACACAGGCGAGGAGCAGGCATGAGGCCCCAGGGACCGTCTCTGAG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     53980 328 +    138250 GCCCTTTTCAGGAAGGCCTCGT---------------------------------------------Ctctgcagatgaagaaag--aggctggtcggggggggggggggggggggaggttacaccatttccccaggagacacggctggtgtggggtgaagctggagctaacccgagcacagcctgactccaggagtcagttccacggcctcttcctctgAGACATGGTTTTCTCATCAGCCAGCAGCGCTCT-GCCTGCTTCCTGGGGCTGTTG-GAGGGTGGCAGGCCACATCAACACAGGAAAGGGACTCAACCTCTCTGCCTCGTATGATGCAGGGGAGGAGCAGGTATGAGGCCCCAGGGACCGTCTCTGAG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20129527 335 - 122678785 gccattttaagg-----cccatctcatcctcccagtaagtgtgaggagggcactaggatggccctc-ctgtgttgttaaggcaactaaggac-------------------ctaagtggtgaggctgcttccccaggtggcacagtttgtttggggtgaaggtggagtcgccccaagcaCAA-------CCAGGAAGCAGCTCCATAATCCCCTCCTCTGGGACTCAA-TTTCTTATCAAACAGCA----TCTAGCCTATTTCCTGGGGCTATTCTGAGGCCACTAGGCTGAAT--ACACATGTA---GACTCATGCTTGGCATCCCAGGAGATACAGGGGAGGGGGCAGAGCGAAGCCGCTCATGTAGTCTCTGAG
i canFam3.chr1                  C 0 I 519

a score=3600.000000
s hg38.chr19_GL949751v2_alt        965673 1 +   1002683 G
s panTro4.chr19                  59959787 1 +  63644993 G
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56907155 1 +  60714840 G
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382589 1 - 106955855 G
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685539 1 +  64156825 G
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55828252 1 +  59248254 G
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47936402 1 +  51301725 G
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47638338 1 +  50890351 G
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     54308 1 +    138250 G
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20129862 519 - 122678785 I

a score=4031525.000000
s hg38.chr19_GL949751v2_alt        965674 1253 +   1002683 GAGGGTCCT-GGGCCCTGGGCTGAGAAAGCAGGGGTGGAGGGCTCCACGTGGAGACCCCAGGCTGGGAGGGGACTCACCGAGTGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCGGGGTGCAGGGCGTTGACAGTCACACCAGAGCCTGGGGAAGAAAGAAAGAGAAGACTGAGGG-AG------------GGGTCCA-GCCTCACCTGGGAGGCTGTGGCAGCCCACACCCAGCTGTGGGGC-TTCCGGGCACCAGGCTGCTTCCTGCACTCAAACCCCATCGTCCCTCTTGCTCTGGAATCTT-----------------------------------------AGTGAAGTGGTCTTATCTTGCGGAGCGGCTCTGCCACATGGCTGCTGGGAGCCGAGCTTT--------------------------cctggagggcttcataaacccagaacgctgagct---------------------------------------------------------------------tac-----------------ccc--gggagcctgcatcggtgcgtggcggtgggacctaagatactgtaactctgaccagctcccagtggggctggcaccgctggtccacagaccgtctttcagaagcaaagGCCTAGCACAGATTTCTCAAT-----------------------------------------------------------------------CTCAGCACTGTGGATGCTGTGGGTTGGGAGGAGTGAGGGGCCATCCCGTGCGCTGTAGGACATTGAG-AGCATCTGGGCCTTTACCCTCCAGATGCCCAGAGCAATCTCTCCCCAAGCC-----------AGCTGTGATCACTG-TGTTTCCAGGCATTGACAACTG----CGGGTCA---AAACTGCCCCTGGTTGAGACTCACT-GG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAACAGCAGCAGGGAAGGACATCTGATCCAGGCAGACTAGACCACCTGGGATGAACAGACAATCCTCAGAAGAACGATCGATTAGT--------------------GATGTCTGCTTCAGGCACCAGAAGCGGGCAGCGTGGTCCACATGCTCTACTTTTGCTGACTCTGTTCTGGATCCACCGTTTGGCCTCCCATCAGCCTAGGATCATGGAAAGGCCGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---CGAGCCTAGCGCCCCCGTACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCGAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTATACTTCCTCGTCTGCCAGTTCAAGTCGTCAAAGTCTATGTGCCCAGCAACATGGGCCAGGGACGAGAGGTTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTTGTCAAGAGAAAGTGACCTGGATTAAGGATGATGAAAA
s panTro4.chr19                  59959788 1357 +  63644993 GAGGGTCCT-GGGCCCTGGGCTGAGAAAGCAGGGGTGGAGGGCTCCGCGTGGAGACCCCAGGCTGGGAGGGGACTCACCGAGTGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCGGGGTGCAGGGCGTTGACAGTCACACCAGAGCCTGGGGAAGAAAGA----GAAGACTGAGGGGAG------------GGGTCCA-GCCTCACCTGGGAGGCTGTGGCAGCCCACACCCAGCTGTGGGGC-TTCCGGGCACCAGGCTGCTTCCTGCACTCAAACCCCATCGTCCCTCTTGCTCTGAAATCTT-----------------------------------------AGTGAAGTGGTCTTATCTTGCGGAGCAGCTCTGCCACATGGCTGCTGGGAGCCGAGCTTT--------------------------CCTGGAGGGCTTGATAAACCCAGAACGCTGAGTTCTGATAAACCACAGACAGGTTTTAAACCACCTGTCTGTGGCACTTTGTTACGGAACCCGAGCTGAGTGGTACAGGTAGGAAGGCACCCACCC--GGGAGCCTGCATCGGTGGGTGGCggtgggacctaagatactgtaactctgaccagctcccagtggggctggcaccgctggtccacagaccgtctttcagaagcaaagGCCTAGCACAgatttctcaat-----------------------------------------------------------------------ctcagcactatggatgctgtgggttgggaggagtgaggggccatcccgtgtgctgtaggacattgagcagcatctgggcctttaccctccagatgcccagagcaatctctccccaaccc-----------agctgtgatcactg-tgtttccaggcattgacaactg----cgggtca---aaactgcccctggttgagactcact-gG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAACAGCAGCAGGGAAGGACATCTGATCCAGGCAGACTAGACCACCTGGGATGAACAGACAATCCTCAGAAGAACGATCGATTAGTATCAGTTAGTATCGATTAGTGATGTCTGCTTCAGGCACCAGAAGCGGGCAGCGTGGTCCACATGCTCTACTTTTGCTGACTCTGTTCTGGATCCACCGTTTGGCCTCCCATCAGCCTAGGATCATGGAAAGGCCGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---CGAGCCTAGTGTCCCCGTACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTATACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCAACATGGGCCAAGGACGAGAGGTTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTTGTCAAGAGAAAGTGACCTGGATTAAGGATGATGAAAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56907156 1227 +  60714840 GAGGGTCCT-GGGCCCTGGGCTGAGAAAGCAGGGGTGGAGGACTCAGCATGGAGACCCCAGGCTGGGAGGGGACTCACCGAGTGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCGGGGTGCAGGGCATTGACAGTCACACCAGAACCTGGGGAAGGAAGA----GAAGACTGAGGG-AG------------GGGTCCA-GCCTCACCTGGGAG--------------------GCTGTGGGGC-TTCCGGGCGCCAGGCTGCTTCCTGCACTCAAACCCCATCGTCCCTCTTGCTCTGAAATCTT-----------------------------------------AGTGAAGTGGTCTTATCTTGCAGGGCAGCTCTGCCACATGGCTGCTGGGAGCCGAGCTTT--------------------------cctggagcgcttgataaacccagaacgctgagct---------------------------------------------------------------------tac-----------------ccc--gggagcctgcatcggtgggtggcggcaggatctgagatactgtaactctgaccagctcccagtggggctggcaccgctggtccacagaccgtctttcagaagcaAAGGCCCAGCACAgatttctcgac-----------------------------------------------------------------------ctcagcactatggacgctgtggggtgggaggagtgaggggcagtcctgtgtgctgtaggacattgagcagcatccgggcctttaccctccagatgcccagagcaatctctccccaaccc-----------agctgtgatcactg-tgtttccaggcattgacaactg----cgggtca---aaactgcccctggttgagactcact-gG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAACAGCAGCAGGGAAGGACATCTGATCCAGGCAGACTAAACCACCTGGGATGAACAGACAATCATC---AGAACgatcgattagt--------------------gatgtctgctgtaggcaccagaagcaggcagcgtggtccacatgctctacttttgccaactctgTTCTGGATCCACTGCTTGGCCTCCCATCAGCCTAGGATCATGGAAAGGCCACTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---CGAGCCTAGCGCCCCCATACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTATACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCAACATGGGCCAAGGACGAGAGGTTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTTCAGCAGCAAGTTTGTCAAGAGAAAGTGACCTGGATTAAGGATGACGAAAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103382590 1249 - 106955855 GAGGGTCCTGGGGCCCTGGGCTGAGAAAGCAGGGGTGGAGGGCACAGCATGGAGA-CCCAGGCTGGGAGGGGACTCACCAAGTGTGGAGCTGGAGAAGGTGGAGCCATGGATGCCTGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCGGGGTGCAGAGCATTGACAGTCACACCAGAACCTGGGGAAGAAAGA----GAAGACTGAGGG-AG------------GGGCCCA-GCCTCACCTGGAAGGCTGTGGCGGCCCACACCCAGCTGTGGGGCTTTCCCGGCACCAGGCTGCTTCCTGAACTCAAACCCCATCGTCCCTCTTGCTCTGAAATCTC-----------------------------------------AGTGAAGTGGTCTTATCTTGCAGGGTGGCTCTGCCACATGGCTGCTGGGAGCCGAGCTTT--------------------------cctggagggcttgataaacccagaacgctgagct---------------------------------------------------------------------tac-----------------ccc--gggagcctgcatcggtgggtggcagtgggatctgacatactgtaactctgaccagctcccagtgcggctggcaccgctggtccacagaccgtctttcagaagcaAGGGCCCAGCACAGACttctcaac-----------------------------------------------------------------------ctcagcactatggacactgtgggctgggaggagtgaggggcagtcctgtgtgctgtaggacgttgaacagcatccgtgcctttaccctccagatgcccagagcaatctctccccaaccc-----------agctgtgatcactg-tgtttccaggcattgacaactg----caagtca---aaactgcccctggttgagactcactgGG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAACAGCAGCAGGGAAGGACATCTGATCCAGGCAGATTAGACCACCTGGGATGAACAGACAATCATC---AGAACgatcgattagc--------------------gatgtctgctccaggcaccagaagggggcagcgtggtccacatgctgtactttcgccaACTGTGTTCTGGATCCGCTGTTTGGCCTCCCATCAGCCTGGGATCATGGAAAGGCCGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---CGAGCCTAGCGCCCCCGTACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTGTACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCAACATGGGCCAAGGACGAGAGGTTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTAGTCAAGAGAAAGTGACCTGGATTAAGGATGACGTAAA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60685540 1289 +  64156825 GAGGGTCCG-GGGCCCCGGGCTGAGAAAGCAAGGGTGGAGGGCTCAGCGTGCAGACCCCAGGCTGGGA-GGGACTCACCGAGCATGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCAGGGTGCAGGGCGTTGACAGTCACACCAGAGCCTGGGGAAGAAATA----GAAGACTGAGGG-AG------------AGGTCCA-GCCTCACCTGGAAGGCTGTGGCAGCCCACACCCAGCTGTGGGGC-TTCCGGGCGCCAGGCTGCTTCCTACACTCAAACCCCATCGTCCCTCTTGCTCTGAAATCTTAGTGGTCTTATCTTGCATCGTCCCTCTTGCTCTGAAATCTTAGTGAAGTGGTCTTATCTTGCAGGGCGGCTCTGCCACATGGCTGCTGGGAGCCGAGCTGT--------------------------cctggagggcttgataaacccagaacgctgagct---------------------------------------------------------------------cac-----------------ccc--aggaatccaaatcggtgggtgatggtgggatctgagatactgtaactctgaccagctcccactggggctggcaccgctggtccacagacggtctttcagaagcaAAGGCCCAGCACAgattcctcaac-----------------------------------------------------------------------ctcagcactatggacactgtggatcgggaggagtgaggggccgtcctgtgtgctgtaggaccttgagcagcatccgggcctttacactccagatgcccagagcaatctctcccccaccc-----------agatgtgatcactg-tgtttccaggcattgacaactg----tgggcca---gaactgcccctggttgagactcact-gG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAGCAGCAGCAGGGAAGGACACCTGATCCAGGCAGACTAGACCACCTGGGATGAACAGACAATCAGCAGAAGAACAATCGATTAGT--------------------GATGTCTGCTTCAGGCACCAGAAGCGGGCAGGGTGGTCTGTGTGCTCTACTTTTGCAGATTCTGTTGTGGAGCCACAGCCTGGCCTCCCATCAGCCTAGCATCATGGAAGGGCTGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---TGAGCCTAGCG-CCCCATACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTATACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCCACGTGGGCCAAGGACGAGAGGTTGATGATCCGTGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTCGTCAAGAGAAAGTGACCTGGATTAAGGATGACAAAAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55828253 1243 +  59248254 GAGGGTCCG-GGGCCCCGGGCTGAGAAAGCAAGGGTGGAGGGCTCAGCGTGCAGACCCCAGGCTGGGA-GGGACTCACCGAGCGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCGGGGTGCAGGGCGTTGACAGTCACACCAGAGCCTGGGGAAGAAATA----GAAGACTGAGGG-AG------------AGGTCCA-GCCTCACCTGGAAGGCTGTGGCAGCCCACACCCAGCTGTGGGGC-TTCCGGGCGCCAGGCTGCTTCCTACACTCAAACCCCATCGTCCCTCTTGCTCTGAAATCTT----------------------------------------------AGTGGTCTTATCTTGCAGGGCGGCTCTGCCACATGGCTGCTGGGAGCCGAGCTGT--------------------------cctggagggcttgataaacccagaacgctgagct---------------------------------------------------------------------cac-----------------ccc--aggaattcaaatcagtgggtgagggtgggatctgagatactgtaactctgaccagctcccactggggctggcaccgctggtccacagaccgtctttcagaagcaAAGGCCCAGCACAgattcctcaac-----------------------------------------------------------------------ctcagcactatggacgctgtggatcgggaggagtgaggggccgtcctgtgtgctgtaggaccttgagcagcatccgggcctttacactccagatgcccagagcaatctctcccccaccc-----------agatgtgatcactg-tgtttccaggcattgacaactg----tgggcca---gaactgcccctggttgagactcact-gG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAGCAGCAGCAGGGAAGGACACCTGATCCAGGCAGACTAGACCACCTGGGATGAACAGACAATCAGCAGAAGAACAATCGATTAGT--------------------GATGTCTGCTTCAGGCACCAGAAGGGGGCAGGGTGGTCCGTGTGCTCTACTTTTGCGGATTCTGTTGTGGAGCCACAGCTTGGCCTCCCATCAGCCTAGGATCATGGAAGGGCTGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---CGAGCCTAGTG-CCCCGTACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTATACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCCACGTGGGCCAAGGACGAGAGGCTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTCGTCAAGAGAAAGTGACCTGGATTAAGGATGACAAAAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47936403 1247 +  51301725 GAGGGTCCT-GGGCCCCGGGCTGAGAAAGCAGGGGTGGAGGGCTCAGCGTGCAGACCCCAGGCTGGGA-GGGACTCACCGAGCGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCGGGGTGCAGGGCGTTGACAGTCACACCAGAGcctggggaagaaaga----gaagactgagGG-AG------------AGGTCCA-GCCTCACCTGGAAGGCTGTGGCAGCCCACACCCAGCTGTGGGGC-TTCCGGGCGCCAGGCTGCTTCCTACACTCAAACCCCGTCGTTCCTCTTGCTCTGAAATCTT-----------------------------------------AGTGAAGTGGTCTTATCTTGCA-GGCGGCTCTGCCACATGGCTGCTGGGAGCCGAGCTGT--------------------------CCTGGAGCACTTGATAAACCCAGAACGCTGAGCT---------------------------------------------------------------------CAC-----------------CCC--AGGAATCCAAATCGGTGGGTGACGGTGGGATCTGAGATACTGTAACTCTGACCAGCTCCCACTGGGGCTGGCACCGCTGGTCCACAGACGGTCTTTCAGAAGCAAAGGCCCAGCACAGATtcctcaac-----------------------------------------------------------------------ctcagcactatggACGCTGTGGATCGGGAGGAGTGAGGGGCCGTCCTGTGTGCTGTAGGACCTGGAGCAGCATCCGGGCCTTTACACTCCAGATGCCCAGAGCAATCTCTCCCCCACCC-----------AGATGTGATCACTG-TGTTTCCAGGCATTGACAACTG----TGGGCCA---GAACTGCCCCTGGTTGAGACTCACT-GG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAGCAGCAGCAGGGAAGGACACCTGATCCAGGCAGACTAGACCACCTGGGATGAACAGACAATCAGCAGAAGAACAATCGATTAGT--------------------GATGTCTGCTTCAGGCACCAGAAGGGGGCAGGGTGGTCCGTGTGCTCTACTTTTGCGGATTCTGTTGTGGAGCCACAGCTTGGCCTCCCATCAGCCTAGGATCATGGAAGGGCTGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---TGAGCCTAGCG-CCCCATACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTCATACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCAACATGGGCCAAGGACGAAAGGTTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTCGTCAAGAGAAAGTGACCTGGATTAAGGATGACAAAAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47638339 1248 +  50890351 GAGGGTCTG-GGGCCCTGGGCTGAGAAAGCAGGGGTGGAGGGCTCAGCGTGCAGACCCCAGGCTGGGAGGGGACTCACCGAGCGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACACCGGGGTGCAGGGCGTTGACAGTCACACCAGAGCCTGGGGAAGAAAGA----GAAGACGGAGGG-AG------------AGGTCCA-GCCTCCCCTGGAAGGCTGTGGCAGCCCACACCCAGCTGTGGGGC-TTCCGGGCGCCAGGCTGCTTCCTACACTCAAACCCCGTCGTGCCTCTTGCTCTGAAATCTT-----------------------------------------AGTGAAGTGGTCTTATCTTGCA-GGCGGCTCTGCCACATGGCTGCTGGGAGCCGAGCTGT--------------------------cctagagcgcttgataaacccagaacgctgagct---------------------------------------------------------------------cac-----------------ccc--aggagtccgaatcagtgggtgagggtgggatctgagatactgtaactctgaccagctcccactggggctggcaccgctggtccacagaccgtctttcagaagcaAAGGCCCAGCACAgattcctcaac-----------------------------------------------------------------------ctcagcactatggacgctgtggatcgggaggagtgaggggccgtcctgtgtgctgtaggacactgagcagcatctgggcctttaccctccagatgcccagagcaatctctcccccaccc-----------agctgtgatcactg-tgtttccaggcattgacaactg----tgggcca---gaactgcccctggttgggactcact-gG-CTGGAGC-CAAAAGGCTGAGCTGCCTGCCCAACAGCAGCAGGGAAGGACACCTGATCCAGGCAGACTAGACCACCTGGGATGAAGAGACAATCATCAGAAGAACAatcgattagt--------------------gatgtctgcttcgggcaccagaagggggcagggtggtccgtgtgctctacttttgcAGATTCTGTTGTGGAGCCACAGCTTGGCCTCCCATCAGCCCAGGATCATGGAAGGGCTGCTCTAGGCTCAGAG-TAAAGCAAGAGGGAGGC---CGAGCCTAGCG-CCCCGCACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGATGGCCAGCTTGCTCTGGCAGTAGGCGGCTTTGGTGTTATACTTCCTCGTCTGCCAGTTCAAGTCATCAAAGTCTATGTGCCCAGCAACATGGGCCAAGGACGAGAGGTTGATGATCCGCGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTCGTCAGGAGAAAGTGACCTGGATTAAGGATGACAAAAA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     54309 1251 +    138250 GAGGGTCCT-GGGCCCTG--------------GGGTGGAGGGCTCAGTGCAGAGACCCCAGGCTGGGAGGGGACTCACCGAGCGTGGTGCTGGAGAAGGTGGAGCCATGGATGCCCGTGTGTCTGCCCAGCTCTGTCCTGGCCACACCGGGGTGCAGGGCATTGACAGTCACGCCAGAGCCTGGGGAA-AAAGA----GAAGACTGAGGG-AG------------GGGT-----CCTTACCTGGAAGGCTGTGGCAGCCCACACTCAGCTCTGGGGC-------------------TTCCTATAGTCAAACCCCATCGTCGCTCTTGCGCTGAAATCTT-----------------------------------------AGTAAGGTGGTCTTATCTTGCAGAGCAGCTCTGCCACGTGGCGCCTGGGGGcagagattt--------------------------cctggagggcttgatagacccagaacaccaggct---------------------------------------------------------------------ca------------------ccc--aggagtctgaatcagtgggtggggctgggatctga--------------gaccagctcccagtggggttggcactgctggtccacagaccatctttcagaGGCAAGGGCCCAGGGCAGATTTCTCAGCGGACGCTGCGGGCTTTGAGGCACTGCTGGTCCACAGACCATCTTTCAGAGGCAAGGGCCCAGGGCAGATTTCTCAGC-----GGATGCTGCGGGCTTTGAGGGgtgaggggctgtcctgtgtgctgcaggacactgaacagcatgtgggcctttaccctccagatgcccagagcaatctctccccgaccc-----------agctgtggttactg-tgcctccaggta-tgacaattc----caggcca---gaagtgctcctggctgagactcact-gG-CTGGAGC-CAGAAGGCTGGGCTGCCTACCGAAT----GCAGGGAAGGACA-CTGATCCAGGCAGACTAGGCCACCTGGAATGAATGAACAATCATCAGAACAACGATCGATTAGT--------------------TACGTCTGCTTCAGGCACCAGAAGCAGGCAGGGTGGTCCCTATGCTCTGTTTTAGCCCACTCTGTTCTAGAGCCACAGCCTGGCCTCCGCCCAGCCCAGGATCACCGAAGGGCTGCTCTGGGCTCAAAG-TA----AAGAGGGAGGC---CGAGCCTAGCG-CCCCATACCTTGCAGCCGCCGGCTCAGCTCCTTGGTGAAGAGGACGACGGCCAGCTTGCTCTGGCTGTAGGCGGCTTTGGGGTCATACTTCCTCGTCTGCCAGTTCAGGTCATCAAAGTCTATGTGCCCAGCAATGTGGGCCAAGGACGAGAGGTTGATGATCCGGGAAGGGGCTGAGGCTTTCAGCTTGTCCAGCAGCAAGTTTGTCAAGAGAAAGTGGCCTGGGTTAAAG--GGTGACAA
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20130381 1223 - 122678785 GAGAGTCCT-AGGCCCTGAGCTGAGAGGGCAGGGG-------CTCCGCTAAGGGACCCCAGGCCAGGAGGGTTCTTACCGAGTGTGAAACTGGAGAAGGCAGAGCTGTGCATGCCTGTGTGTCTGCCCAGCTCTGTCCTGGCCACGCCAGGGTGCAGTGCATTGACAGTCACGCCTGTGCCTAGGGAGAGAAGA---GGAGGGATGAGGG-AGTGGGCAAACGTCAGGTTCACACCCCACCTGGAAAGCTGACGTTGCCCATTCTCAGCTCTAGGGC-TACCCAGTACTGTGCCATGTCCTACCTTTGAACCCACAGCACCCTCTTGCTCTGAAACTTC---------------------------------------CACATTGAGGGGTTTCATCTTGCATTGCAGCTCTGTTGCATGACTGCCCAGAGcagagcctcccaaacctgagcgtatgtaaaaatcacccggagcacttgagacacccaaaccgctaggtt--------------------------ccacc--------------------------------------cac-----------------ccccagggaatctgaagcagtgggtcggggtggggtctgagatgttgcagtggtgacaagctcccagcccagctgacattgcgggtccacggatgctctctgaggagcaggg---CAAAGGGTACCTTTCAAC-----------------------------------------------------------------------TCCAGCTCTGTGCACACTGAGGTC-------------AGATCATTCTTGATCCTG-------CTGAGCAG------------------ctagctgccagtagcaacacccaccccacctccactccctgaagcgaggaccacaactatcttcagatactgccaaatgtccctggggcatccacatcacccatggttgagaatcact-AGCCTAGAGCACCAATGACTTAGATGCCTGTGTGGGATGAGCAGGGAAGGATGCC--------------------------------------------------ACGACTGATGAGT--------------------GATGTCTGCTTCAGGCACC---ACCGAACATGGTGGTATGTGTTTCACACATCCACCTGCTCTGTTCTGGGACTGATGCTTGACCTTCCATCGGTCCAGGGTCATAGCAGGACTGTCCCAGGCTCAGAGCTAGAGGAAGAGGAAGGCCAGCGAGGCTCACACACACATACCCTGCAGCCGCCGGCTCAGCTCCTTGGTAAAGAGGATGACGGCCAGCTTACTCTGGCAATAAGCCGCTTTGGTGTCATACTTCCTCTTCTCCCAGTTCAAGTCATCAAAGTCTATGTGTCCTGCAACGTGGGCCAAGGACGAGAGATTGATGATCCGTGAAGGGGCTGAGGCTTTCAATTTGTCCAGCAGCAAGTTTGTCAAGAGAAAGTGACCTGGGTGAAGGACAACAAAAA
i canFam3.chr1                  I 519 I 831

a score=247827.000000
s hg38.chr19_GL949751v2_alt        966927 88 +   1002683 GGTCACTTT-------------tgactcacacctaaaatcccagcactttgggaggacgacgggggaggatcgcttgaacccaTGGTGCAGCC-CCTGCCCA
s panTro4.chr19                  59961145 88 +  63644993 GCTCACTTT-------------tgactcacacctaaaatcccagcactttgggaggatgacgggggaggattgcttgaacccaCGGTGCAGTC-CCTGCCCA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56908383 88 +  60714840 GATCACTTT-------------tggctcacacctaaaatcccagcactttgggaggatgacgggggaggatcgcttgaacccaCGGTGCGGCC-CCTGCCCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103383839 88 - 106955855 GGTCACTTT-------------tggctcacgcctaaaatcccagcactttgggaggacgacaggggaggatcgcttgaacccaCGGTGCAGCC-CCTGCCCA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60686829 89 +  64156825 GGTCACTTT-------------tggctcacgtctaaaatcccagcactttgggaggacgacgggggaggatcgcttgagcccaCGGGGCAGCCCCCTGCCCA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55829496 89 +  59248254 GGTCACTTT-------------tggctcacgcctaaaattccagcactttgggaggacgacgggggaggatcgcttgagcccacggggcagCCCCCTGCCCA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47937650 89 +  51301725 GGTCACTTT-------------tggctcacgcctaaaatcccagcactttgggaggacgacgggggaggatcgcttgagcccacggGGCAGCCGCCTGCCCA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47639587 89 +  50890351 GGTCACTTC-------------tggctcacgcctaaaatcccagcactttggggggacgacaggggaggatcgcttgagcccacggggcagCCCCCTGCCCA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     55560 95 +    138250 GGTCACTTTTggtcgggcacggtggcttacgcctgtaatcccagcacttcgggag-------ggggaggatggcttgagCCCACGGTGTGGCCCCCTGCCCA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20131604 831 - 122678785 I

a score=623176.000000
s hg38.chr19_GL949751v2_alt        967015 171 +   1002683 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCGAAGCCGTCCTCGGTGGTCCAGTGGGGGCACCGCATCACACCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAA---------GAGAGGGGTGGAGGAGGAGACATCCCGGTGAGGACAGACCCCAGCCTGATGC
s panTro4.chr19                  59961233 171 +  63644993 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCGAAGCCGTCCTCGGTGGTCCAGTGGGGGCACCGCATCACACCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAA---------GAGAGGGGTGGAGGAGGAGACATCCCGGTGAGGACAGACCCCAGCCTGAGGC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56908471 171 +  60714840 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCGAAGCCGTCCTCGGTGATCCAGTGGGGACACCGCATCACACCTGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAA---------GAGAGGGGTGGGGAAGGAGACATCAGGGTGAGGACAGACCCCAGCCTGAGGC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103383927 171 - 106955855 GGCCTCACCCAGGTAGTTAACGCCAAACTGCATCTCGAAGCCGTCCTCGGTGGTCCAGTGGGGGCATCGCATGACGCCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAA---------GAGGGGGGTGGGGAAGGAGACATCAGGGTGAGGACAGACCCCAGCCCGAGGC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60686918 180 +  64156825 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCAAAGCCGTCCTCAGTGGTCCAGTGGGGGCACCGCATCACGCCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAAgggggggggggggggggggggggaggAGACATCAGGGAGAGGACAGACCGCAGCCTGAGGC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55829585 171 +  59248254 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCAAAGCCGTCCTCAGTGGTCCAGTGGGGGCACCGCATCACGCCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAA---------GGGAGGGGTGGGGAAGGAGACATCAGGGTGAGGACAGACCCCAGCCTGAGGC
i macFas5.chr19                 C 0 I 16
s papAnu2.chr19                  47937739 171 +  51301725 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCGAAGCCGTCCTCGGTGGTCCAGTGGGGGCACCGCATCACGCCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTggaa---------gggaggggtggggaaggagaCATCAGGGAGAGGACAGACCCCAGCCCGAGGC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47639676 171 +  50890351 GGCCTCACCCAGGTGGTTAACGCCAAACTGCATCTCGAAGCCGTCCTCGGTGGTCCAGTGGGGGCACCGCATCACGCCCGCGTTGTTGATTAGAATGTCCACTCGCTCCTCCTCTGGAA---------GAGAGGGGTGGGGAAGGAGACGTCAGGGAGAGGACAGACCCCAGCCTGAGGC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     55655 169 +    138250 GGACTCACCCAGGTGGTTAACGCCAAACTGCATCTCAAAGCCGTCCTCCGTGGTCCAGTGGGGGCACCGCATCACGGCCGCGTTGTTGACTAGAATGTCCACTCGCTCCTCCTCTAGAA-----------GACGGGTGGGGAAGGAGACCTCAGGGTGAGGACAGACCCCGGCCTGAGGC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20132435 164 - 122678785 GGCCTCACCCAAGTGGTTAACACCAAACTGCATCTCAAAGCCGTCCTTGGTGGTCCAGTGGGGGCACCGCATCACGGCCGCGTTGTTGACCAGGATATGAACTTGCTCCTCCTCTAGGA---------GACAGGGGTGAGGGCAGGTATGTCA-------GTCGCATGCCTGCCTGGAGC
i canFam3.chr1                  I 831 C 0

a score=224514.000000
s hg38.chr19_GL949751v2_alt        967186 126 +   1002683 ACCAGCA------------------------------------------GAAACACTCCTGTGctcccacaacctgtgaatgtggcctg-tgccggaaacagggtctgtgc-cgaagtggccatgtcaggatgcggtcattagggtgagccctaatccaatgactggtgt
s panTro4.chr19                  59961404 126 +  63644993 ACCAGCA------------------------------------------GAAACACTCCTGTGctcccacaacccgtgaatgtggcctg-tgccggaaacagggtctgtgc-cgaagtggccatgtcaggatgcggtcattagggtgagccctaatccaatgactggtgt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56908642 126 +  60714840 GCCCGCA------------------------------------------CAAACACTCCTGTGctcccagaacccatgaacgtggcctg-tgccagaaacagggtctgtgc-cgaagtggccacatcaggatgaggtcattagggtgagccctaatccaatgactggtgt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103384098 124 - 106955855 ACCAGCA------------------------------------------GAAACACTCCTGTactcccaga--ccgtgaacgtggcctg-tgccggaaacagggtctgtgc-agaagtggccacgtcaggatgaggtcattagggcgagccctaatccagtgactggtgt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60687098 107 +  64156825 AGCAGTA------------------------------------------GAAACGTTCCTGTGCTCCCAGAACCCGTGAACATGGCCT-------------------GTGC-TGAAGTGGCCACgtcaggaagaggtcattagggtgagccc-aatccagtgactggtgt
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47937910 125 +  51301725 AGCAGTA------------------------------------------GAAACGTTCCTGTACTCCCAGAACCCGTGAACATGGCCTG-TGCCGGAAACAGGGTCCGTGC-TGAAGTGGCCACGTCAGGAAGAGGTCATTAGGGTGAGCCC-AATccagtgactggtgt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47639847 126 +  50890351 AGCAGTA------------------------------------------GAAACGTTCCTGTGctcccggaacccgtgaacatggcctg-cgccggaaacagggtctgtgc-caaagtggccacgtcaggaagaggtcattagggtgagccctgatccagtgactggtgt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     55824 100 +    138250 -ACAGTA------------------------------------------GAAACGTT---------CCGGAGCCCGTGAAGGTGGCCCC-TGCTGGAAACAGG--CTGTGC-AGAAGCGGCCA--------------cattagggtgaggcctaatccaatgactggtgt
i calJac3.chr22_GL285922_random C 0 I 286
s canFam3.chr1                   20132599 156 - 122678785 ACCAGCGCAATTGGTGTAAAACAACCCCTGCACTGAGCTGAACTGTCCTAAAACATTCAGGCCCAcccagagcctgggaatgcaacctgtttttggaaacag--tccttgcaaaaagtaaagaagttaagataaggtca-cagcgtaggccctaatgca-----------
i canFam3.chr1                  C 0 C 0
e macFas5.chr19                  55829756  16 +  59248254 I

a score=405565.000000
s hg38.chr19_GL949751v2_alt        967312 201 +   1002683 ccttataggaagggaaaacagagacagagacacatggggaga---aggcc---atgtgtggacagaggcaaagaccggagaggcacagctccaaggtgagggtgggccgcccccgctggaag-tggaagaggctgggaggattatggcccgtctcacagg-tcacagccacagggacaccgcgat-tcagactgccggcttccggaaccg
s panTro4.chr19                  59961530 200 +  63644993 ccttataggaagggaaaacagagacagagacacatggggaga---aggcc---atgtgtggacggaggcaaagaccggagaggcacagctccaaggtgagggtggg-cgcccctgctggaag-tggaagaggctgggaggattatggcccgtctcacagg-tcacagccacagggacaccgtgat-tcagactgccggcttccggaaccg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56908768 199 +  60714840 ccttatatgaaggg-aaacagagacagagacacatggggaga---aggcc---atgcgtggatggaggcagagaccagagaggcacagctccaaggtgagggtgcg-cacccccgctggaag-tggaagaggctgggaggattatggcccgtctcacagg-tcacagccacagggacaccatgat-tcagactgccggcttccggaaccg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103384222 200 - 106955855 ccttataggaagggaaaacagagacagagacacatggggaga---aggcc---acgtgtgaacggaggcggagaccggagaggcgcagctccaaggtgagggtggg-cacccccactggaag-tggaagaggctgggaggattacggcccgtctcacagg-tcacagccacagggacaccgtgat-tgagactgccggcttccggaaccg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60687205 201 +  64156825 ccttataggaagggaaaacagagacagagacacacggggaga---aggcc---acatgtggacggaagcggagaccggagaggcgcagctccgagatgagtgtggg-cgcccccgctggaag-tggaagaggctgggaggattaccgcccgtctcacaggatcacagccacagggacaccgtgat-tcggactgccggcttccggacccg
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47938035 201 +  51301725 ccttataggaagggaaaacagagacagagacacacagggaga---aggcc---acATGTGGACGGAAGCGGAGACCGGAGAGGCGCAGCTCCAAGATGAGTGTGGG-CGCCCCCGCTGGAAG-TGAAAGAGGCTGGGAGGATTACCGCCCGTCTCACAGGATCACAGCCACAGGGACACCGTGAT-TCAGGCTGCCGGTTTCCGGACCCG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47639973 201 +  50890351 ccttataggaagggaaaacagagacagagacacacggggaga---aggcc---acgtgtggacggaagcggagaccggagaggcgcagctccgagatgagtgtggg-cgcccccgctggaag-tggaaaaggctgggaggattaccgcccgtctcacaggatcacagccacagggacgccgtgat-tcggattgccggcttccggacccg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     56210 150 +    138250 CCTTACAGGAAGGGAAAACAG----------------------------------------ACGGAGACACGGACAAGAGAG-----------------GTGTGGG-CGACTGCACTGGAAG-TGGAGGAGGCTGGGAGGAttacagcccggctcacaggaacacagccccagagacacccagat-tccaactgctggcttccagaacgg
i calJac3.chr22_GL285922_random I 286 C 0
s canFam3.chr1                   20132755 163 - 122678785 ------------gcaggacagggactgaggaccatggggaaacagaggccatgatgtatcgat-gagccaaggatcactgaggaccaac------------------agccactgccagaagctgaaagaagcagaaaggatctc-----------ctgg-tcccttcct----gagactgtgatctcagacttctggcctccaaaactg
i canFam3.chr1                  C 0 I 2038
e macFas5.chr19                  55829756  16 +  59248254 I

a score=1119423.000000
s hg38.chr19_GL949751v2_alt        967513 570 +   1002683 tgagggaatgcacgtctgagggtgt-aagccactgggtttgcagtacattgttacagcagctccaggacactcacacGCCCTCCGCACCTCCATCTAAGCCTTGGGACTCCTTCCTGCCGGAGCCCCGAGGCCAAAAACGGGAGGTTACCGGTGGGAGCCCCGGCAC--------CGCAGGC---G-TGGTTTCATTCCCAAACCTGCCACCTCACTCATACAAGCAACCAAAGGACACAC-AGATGGAGACTGCagcctcagtttcctcagctgtaaaatgcgctgaaccacagggccttcctcCCtgtaccactcagctcgggttccgtaacaa------agtgccacagacaggtggtttaaaacctcacagacctggccgggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggagaaaccgcgtctttactaaaaatacaaaattagccaggcgtggtggcatgcacctgtaatcccagctactcaggaggctgaggcgggaaaatcgcttgaaaccaggag
s panTro4.chr19                  59961730 570 +  63644993 tgagggaatgcacgtctgagagtgt-aagccactgggtttgcagtacgttgttacagcggccccaggacactcacacGCCCTCCGCACCTCCATCTAAGCCTTGGGACTCCTTCCTGCCGGAGCCCCGAGGCCAAAAACAGGGGGTTACCGGTGGGAGCCCCGGCAC--------CGCAGGC---G-TGGTTTCATTCCCAAACCTGCCACCTCACTCACACAAGCAACCAAAGGACACAC-AGATGGAGACTGCAgcctcagtttcctcagctgtaaaatgcgctgaaccacagggccttcctcCCtgtaccactcagctcgggttccgtaacaa------agtgccacagacaggtggtttaaaacctcacagacctggccgggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggagaaaccgcgtctttactaaaaatacaaaattagccaggcgtggtggcatgcacctgtaatcccagctactcaggaggctgaggcaggaaaatcgcttgaaaccaggag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56908967 573 +  60714840 tgaggaaaggcatgtctgagggtgt-aagccactgggtttgcagtacattgttacagcagccccaggacactcacgcaCCCTCCGCACCTCCATCTAAGCCTTGGGACTCTTTCCTACAGGAGCCCCGAGGCCAAAAATGGGGGGTTACCGGTGGGAGCCCCGGCACCACAGGCTCGCAGGT---G-TGGTTTCATTCCCAAACCTGCCATCTCAC----ACAAGCAACCAAAGGACACAC-AGATGGCGACTGCagcctcagttgcctcagctgtaaaatgtgctgaaccacagggccttcttcCCtgtaccactcagctcgggttccataacaa------agtgccacagacaggcggtttaaaacctcacagacctcgccgggcacggtggctcacgcctgtaatcccagcacattgagaggccgaggtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggagaaactgcgtctttactaaaaatacaaaattagccaggcgtggtggcgtgcacctgtaattccagctactcaggaggctgaggcgggagaatcgctt-aaaccaggag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103384422 571 - 106955855 tgagggaatgcatgtctgagggtgt-aagccactgggtttgcggtacattgttacagcagccccaggacactcacacGCCCTCCGCACCTCCATCTAAGCCTTGGGACTCTTTCCTGCAGGAGCCCCGAGGCCAAAAACGGGGGGTTACCTGTGGGAGCCCCGGCACCGCAGGCTCGCAGGT---G-TGGTTTCATTCCCAAACCTGCCACCTCAC----ACAAGCAACCAAAGGACACAC-AGATGGAGACTGCagcctcagtttcctcagctgtaaaatgcactgaaccacagggccttcctcCCtgtaccactcggctcaggttccataacaa------agtgccacagacaggtggtttaaaacctcacggacctggcccggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacct---gtcaggagttcaagacaagcctggcaaacatggagaaaccgcgtctttactaaaaatacaaaattagccaggcatggtggcgtgcacctgtaattccagctactcaggaggccgaggcgggagaatagcttgaaaccaggag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60687406 571 +  64156825 tgagggaatgcatgtctgagggtgtaaagccactgggtttgaggtacctcgttacagcaggtccaggacactcacac--------CCCCTCCACCTAAGCCTTGGGACTCTTTCCTGCAGGAGCCCCAAGGCCAAAC----GGGGTTACCGGTGCGAGCCCTGGCACTGCAGGTTTGCAGGTGCGG-CGGTTTCATTCCGAAGCCTGCCACCTCACTCGCACAGACAACCAGAGGGCACACAAGATGGAGACTGCagcctcagtttcctcagctgtaaaatgcgctgaaccacagggccttcctcCCtgtatcgctcggctcaggttccataacaa------agtgccacagacaggtggtttaaaacctcacagacctggccgggcgtggtggctcacgtctgtaatcccagcactttgggagaccgaggtgagcggatcacctgaggtcaggagtttgagactagcctgacccacatgaagaaatggcgtctctactaaaaatacaaaattagccaggcgtggtggtgggcacctgtaatgccagctactcaggaggctgaggcaagagaatcgcttgaaaccgggag
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47938236 567 +  51301725 TGAGGGAATGCATGTCTGAGGGTGTAAAGCCACTGGGTTTGAGGTACCTCGTTACAGCAGGCCCAGGACACTCACAC--------CCTCTCCTTCTAAGCCTTGGGACTCTTTCCTGCAGGAGCCCTGAGGCCAAAC----AGGGTTACCGGTGCGAGCACTGGCACCGCAGGTTTGCAGGT---G-CGGTTTCATTCCGAAGCCTGCCACCTCACTCACACAGACAACCAAAGGGCACAC-AGATGGAGactgcagcctcagtttcctcagctgtaaaatgcgCTGAACCATAGGGCCTTCCTCCCTATATCGCTCGGCTCAGGTtccataacaa------agtgccacagacAGGTGGTTTAAAACCTCACagacctggccgggcgcagtggctcacgtctgtaatcccagcactttgggagaccgaggtaagcggatcacctgaggtcaggagtttgagactagcctgacccacatgaagaaacggcgtctctactaaaaatacaaaattagccaggcgtggtggcgggcacctgtaatgccagctactcaggaggctgaggcaaaagaatcgcttgaaaccgggag
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47640174 566 +  50890351 tgagggaatgcatgtctgagggtgt-aagccactgggtttgaggcacctcgttacagcaggcccaggacactCACGC--------CCCCTCCTTCTAAGCCTTGGGACTCTTTCCTGCAGGAGCCCCGAGGCCAAAC----GGGGTTACCGGTGCGAGCCCCGGCACTGCAGGTTTGCAGGT---G-CGGTTTCATTCCCAAGCCTGCCCCCTCACTCGCACAGACAAGCAAAGGGCACAC-AGATGGAGACTGCagcctcagtttcctcagctgtaaaatgcactgaaccacagggccttcctcCCTATATCGCTCGGctcgggttccataacaa------agtgccacagacgggtggtttaaaacctcacagacctggccgggtgcggtggctcacgtctgtaatcccagcactttgggaggccgaagtgagcggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaactgcgtctctactaaaaatacaaaattagccgggcgtggtggcgggcacctgtaatgccagctactcaggaggctgaggcaggagaatcgcttgaaaccgggag
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     56360 471 +    138250 tgagggaatgcgcttccgagggtgg-aagcccctgggtttgcggtacacggttacagcagccccaggacacacacacaCCCTGCACACCTCCATGGAAGCCCTGGGACTCTTTCCTGCAGG----------------------------------------------------TTCTCAGGC---GCTGGTTTCATTCCCAAACCTGCCACCTCACTCGCACAAGCAACCACAGGGCACAC-AGACGG-------AGCCTCAGTTTCCACAGC-----------------------ACCTTCCTCCCTGTGCCACTGGGTTCAGGTTCCATAACGAAGTGCCAGTGCCACAGACAGGTGGGTGAAAACCTCA--GACCCggccgggcatggtggctcacgcctgt-gtcgca----tttgggag--------------------cgaggaccgga--ttgaa---agcatggccaacacagtgaagccccgtctctaccaaaaacacaaaaTTAgccgggcatggtggctcacgcctgtgatcccagcagtttgggagggcgaggcaggtggatcacctgaggtcaggag
i calJac3.chr22_GL285922_random C 0 I 218
e canFam3.chr1                   20132918 2038 - 122678785 I
e macFas5.chr19                  55829756  16 +  59248254 I

a score=269628.000000
s hg38.chr19_GL949751v2_alt        968083 179 +   1002683 gcagagggtgcagtgagccgagatcgcatcattacactccatcctgggcaataaaagcaaaactccatctcaa--------aaaaaaaaaaaaaaatcaca-gtcccagaggctggaagtcccagatcaaggtgtgggcagggctggttccctctcagggccctcagggaggatccgctctggtctct
s panTro4.chr19                  59962300 179 +  63644993 gcagagggtgcagtgagccgagatcgcgtcattacactccatcctgggcaataagagcgaaactccatctcaa--------aaaaaaaaaaaaaaatcaca-gtcccagaggctggaagtcccagatcaaggtgtgggcagggctggttccctctcagggccctcagggaggatctgctctggtctct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56909540 170 +  60714840 gcagagggtgcagtgagccgagatcacgtcattacactccatcctgggcaataagagcaaaactccatctcaa--------aaaaaaa---------caca-gtcccggaggctggaaggaccagatcaaggtgtgggcagggctggttccctctgagggccctcagggagaatctgctctggcctct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103384993 178 - 106955855 gcagaggtggcagtgagccgagatcgcgtcattacactccatcctgggcaacgagagcaaaactccatttcaa--------aaaaaaaaaaaaaaa-atca-gtcctggaggctggaagtcccagatcaaggtgtgggcagggctggttccctctgagggcccccagggagaatctgctctggcctct
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60687977 184 +  64156825 gcaggggctgcagtgagcagaggtcgcaccattacactccagcctgggcaacaagagcgagactccatctcaatcactcactcaatcaattaat---caca-gtcccagaggctggaagtcccagatcaaggtgtgggcagggctggttccctctgagggccctcagggagaatctgctctggcctct
i rheMac3.chr19                 C 0 I 1362
s papAnu2.chr19                  47938803 177 +  51301725 gcaggggctgcagtgagaagagatcgcaccattacactccagcctgggcaacaagagcgagactccatctcaa--------tcaatcaatcaat---cacacGTCCCTGAAGCTCGATGTCccagatcaaggtgtgggcaagGCTGGTTCCCTCTGAGGGCCCTCAGGGAGAAtctgctctggcctct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47640740 172 +  50890351 gcagaggctgcggtgagcagaggtcgcaccattacactccagcctgggcaacaagagcgagactccatctcaa--------tcaatcaatacata--caca-gtcccagaggctggaagttccagatcaaggtgtgggcagggctggttccctctgagggccctcagggagaatctgctctgg-----
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756  16 +  59248254 I

a score=79619.000000
s hg38.chr19_GL949751v2_alt        968262 101 +   1002683 ctccttggctcacaggtgaccatctcctctctccctcttcccttcctcttccctttggagctgtctCTTTTTTTTTTTTC-----ATttttccttttttaatttta
s panTro4.chr19                  59962479  95 +  63644993 ctccttggctcacaggtgaccatctcctctctccctcttcCCTTC-----------GGAGCTGTCTCTTTTTTTTTTTTCCTTTTATTTTTCCTTTTtaaatttta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56909710  94 +  60714840 ctccttggctcacaggtgaccatctcctctctccctcttcCCTTC-----------GGAGCTGTCTTTTTTTTTTTTTCC-TTTTAtttttccttttttaatttta
i ponAbe2.chr19                 C 0 I 5419
s nomLeu3.chr10                 103385171  90 - 106955855 ctccttggttcagaggtgaccatctcctctctccctcttcccttcctcttccctttgGAG----CTCTTTTTTTTTTTTC------------CTTTTTTAATTTTA
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47938980  95 +  51301725 ctccttggctcacaggtgaccgtctcctctctcccttctcccttcctcttccctttggagctatctctctcttttttttt--------t---ctttttaaattttt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47640912  73 +  50890351 -------------------------cttctctcccttctCCCTTCCTCTTCCCTTTGGAGCTGTCTCTCTCTTTTTTTTT--------TTTCCTTTTTAAATTTTA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60688161 1362 +  64156825 I

a score=144.000000
s hg38.chr19_GL949751v2_alt        968363 2 +   1002683 ga
s panTro4.chr19                  59962574 2 +  63644993 ta
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103385261 2 - 106955855 ta
i nomLeu3.chr10                 C 0 I 652
s papAnu2.chr19                  47939075 2 +  51301725 tt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47640985 2 +  50890351 TA
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56909804 5419 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756 16 +  59248254 I
e rheMac3.chr19                  60688161 1362 +  64156825 I

a score=61656.000000
s hg38.chr19_GL949751v2_alt        968365 101 +   1002683 ---------------tttttcagacatggtctcactatgttgcccaggctgg---------------tctca----------------aactcttgaactcaagcaatcctcctgctttggcctcccagagtgctgcaatttca-----CTG
s panTro4.chr19                  59962576 101 +  63644993 ---------------tttttcagacatggtctcactatgttgcccaggctgg---------------tctca----------------aactcttgacctcaagcaatcctcctgctttggcctcccagagtgctgcaatttca-----CTG
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103385915 101 - 106955855 ---------------tttttcagacatggtctcactatgttgcccaggctgg---------------tctca----------------aactcttggcctcaagcaatcctcctgctttcgcctcccaaagtgctgcaatttca-----CTG
i nomLeu3.chr10                 I 652 C 0
s papAnu2.chr19                  47939077 140 +  51301725 t------------tttttttgagacggagtctcgctctgtcacccaggctggagtgcagtggccgaatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47640987 116 +  50890351 TGCATATAtatactttttttcagacatggtctcactatgttgcccaggctgg---------------tctca----------------aacttttggcctcaagcaatcctcctgctttgccctcccaaagtgctgcgatttca-----CTG
i chlSab2.chr6                  C 0 I 43
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56909804 5419 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60688161 1362 +  64156825 I

a score=27923.000000
s hg38.chr19_GL949751v2_alt        968466 120 +   1002683 ------CCCCCAGCCTAtttttttttttttgggggggggagatggagtttcactcttgtcacccaggctggagtgcaatggtgcgatcttggctcactgcaacctctgcctcccaggttcaaacaa
s panTro4.chr19                  59962677 111 +  63644993 ------CCCCCAGCCTAtttttttt---------gggggagatggagtttcactcttgtcacccaggctggagtgcaatggtgcgatcttggctcactgcaacctccgcctcccaggttcaaacaa
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103386016 118 - 106955855 ------CCCCCAACCTAttttttttttttttt--tttggagatggagtttcactcttgtcacacaggctggagtgcaatggtgcgatcttggctcactgcaacctctgcctcccaggttcaaacaa
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47939217  89 +  51301725 ccacctcgcccggctaagtttttgtattttt---agtagagacggggtttcact-gtgttagccaggatgg---------------tctcgatctcctg--------acctcgtga----------
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56909804 5419 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e chlSab2.chr6                   47641103  43 +  50890351 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60688161 1362 +  64156825 I

a score=244297.000000
s hg38.chr19_GL949751v2_alt        968586 367 +   1002683 ttctcctgcctcagcctcccaagtagct-ggactacaggcatccaccaccacaccggg--------ttaattttt---tgtat-------ctttagtagagacggggcttcaccatgttggccaggctagtctcacactcctgac-ctc--gtgatccacctacctcagcctcccaaagtgctgggactgcaggcgtgagccaccacactcagtcTACTTGGCCTAttttttatatttcttt---gagacagggtctccctc-tgacacctgggctggagtacagtggcgcaatcactgctcactgcagcctcaacctcccaggctcaagcagtcttcttg-ctcagc-----------ctcccaagtagctggggccacaggcatgcgccaccatgcccagcta
s panTro4.chr19                  59962788 367 +  63644993 ttctcctgcctcagcctcccaagtagct-ggactacaggcatccaccatcacacctgg--------ttaattttt---tgtat-------ctttagtagagacggggcttcaccatgttggccaggctagtctcacactcctgac-ctc--gtgatccacctgcctcagcctcccaaagtgctgggactgcaggcgtgagccaccacactcagtcTACTTGGCCTAttttttatatttcttt---gagacagggtctccctc-tgacacctgggctggagtacagtggcgcagtcactgctcactgcagcctcaacctcccaggctcaagcagtcttcttg-ctcagc-----------ctcccaagtagctggggccacaggcatgcgccaccatgcccagcta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56915223 368 +  60714840 ttctcctgcctcagcctctcaagtagct-gaaccacaggcatccaccaccacattagg--------ttaattttt---tgtat-------ctttagtagagacggggcttcaccatgttggccaggcaagtctcaaactcctgacaatc--atgatccacctgcctcagcctcccaaagtgctgggattgcaggcgtgagccaccacactcagtcCACTTGGCCTAttttttatatttcttt---gagacggggtctgtctc-tgacacctgggctggagtacagtggcacaatcactgctcactgcagcctcaacctcccaggctcaagcaatcttcttg-ctcagc-----------ctcccaagtagctggggccacaggcacgtgccaccatgcccagcta
i ponAbe2.chr19                 I 5419 C 0
s nomLeu3.chr10                 103386134 375 - 106955855 ---ttctgcctcagcctcctgagtagct-ggactacaggcacctgccaccacacctgg--------ttaattttt---tgtat-------ctttactagagacggggcttcaccatgttggccaggctagtctcaaactcctgac-ctc--gtgatccacctgcctcggcctcccaaagtgctgggagtgcaggcgtgagccaccacacttggtcCACTCGGCCTAttttttatatttcttt---gagacggggtgtccctc-tgacacctgggctggagtacagtggtgcaatcactgctcactgcagcctcaacctcccaggctcaagcagtcttcttg-ctcagcctcccaagtagctcccaagtagctggggccacaggcacgtgcccccatgcccagcta
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47939306 368 +  51301725 tccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccttctttttaaattttatatgcatatatatactttttttcagacatggtctcactatgttgcccaggctggtctcaaacttttggc-ctcaagcaatcctcctgctttgccctcccaaagtgctgtgatt-----------tcaccac-------------ggcctattttttttttttttttttggaggtggagtttcattcttttcgcccaggctggagtgcaatggcgcgatctcagctcac-gcaactttcacctcccaggttcaaacaattctcctgcctcagc-----------ctcccgagtagctgggactacaggcatccgccaccatgcccggcta
i papAnu2.chr19                 C 0 I 1261
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e chlSab2.chr6                   47641103  43 +  50890351 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60688161 1362 +  64156825 I

a score=96516.000000
s hg38.chr19_GL949751v2_alt        968953 200 +   1002683 GCACgtctgtttctgtgcgcaaatctccccttttcataaggacaccagtcactggattagggcccaccctaatgacctcattttcacttcaggacctctgtaaacacccacctctaaatgaagtcacatgctgagggatgggggttcaggatcccaacctatccttgggggtggaggacacaatggaattcataaTGCTC
s panTro4.chr19                  59963155 200 +  63644993 GCACgtctgtttctgtgcgcaaatttccccttttcataaggacaccagtcactggattagggcccaccctaatgacctcattttcacttcaggacctctgtaaacacccacctctaagtgaggtcacatgctgagggacgggggttcaggatcccaacctatccttgggggtggaggacacaatgaaattcataaTGCTC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56915591 200 +  60714840 GCACgtctgtttctgtgtgcaaatttccccttttaataaggacaccagtcactggattagggcccaccctatagacctcattttaacttcaggacctctgtaaacacccacctctaaatgaggtcacatgctgagcgacgggggttcaggatcccaacctatccttgggggtggaggacacaatggaattcataaTGCTC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103386509 197 - 106955855 GCACgtctgtttgtgtgtgcaaatttccccttttaataaggacaccagtcactggattagggcccaccctaatgacctcattttaacttgaggacctccgtaaacacccacctgtaagtgaggtcacatgcggagggacagggggtcaggagcccaacctatcctt-ggggtggaggacacaaGGGAATCAGTAAAA--A
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e chlSab2.chr6                   47641103  43 +  50890351 I
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60688161 1362 +  64156825 I

a score=528242.000000
s hg38.chr19_GL949751v2_alt        969153 703 +   1002683 CCGAAGTGGTTTTCGGCGGGGATCGTGAATTAGGTGTCCAGCGCGTAACACAC--AGACACCATCTGGTTCTCTGTGTGAGAAGGAGGGGGTTGCagcacacccgtcatgaataccagctctggagcaggacagacaggttcaaagcctggctccaccccgaccagctgcatgatcctggccaagtcacatcacttctctgtgactcagtttactccttgtaaaaaaaaaaaaaaaaaaaggataataacatcacctgcctggtacaactgtATacttactcattcagtaagtattttctaagcacctattactgggcactggaaatacagggtggacagcacagccgaggccccgtccgtgtggaccggacattccagtgcagctgagagccacttccactcgtgagagaatctacccgtgacagagctgcgtggaagctgacaggaggcccctctcaggaggtgacgcagaaactgggaccgggaaaatgaggcagggcccacgtgcggagacccagggaagggggatgcaggcagcaggcgcagcacgggtaaggcccaaaggcggga-CAGGGAGACTCCACTCACAGCTGGGCGCCCAGGAGTGCCGCCAGCTTCTGGTGTttt----gttttg---------------gttttttttctttttttttttgagatgaagtctcactctgccacccaggctggagtgcagtggtgtgatct
s panTro4.chr19                  59963355 715 +  63644993 CCGAAGTGGTTTTCGGCGGGGATCGTGAATTAGGTGTCCAGCGCGTAACACACAGAGACACCGTCTGGTTCTCTGTGTGAGAAGGA--GGGTtgcagcacacccgtcatgaatacgagctctggagcaggacagacgggtccaaaccctggctccaccccgaccagctgcacgatcctggccaagtcacatcgcttctctgtgactcagtttactccttgtaaaaaaaaaaaaaaaaa---gataataacatcacctgcctggtacaactgtATacttactcattcggtaagtattttctaagcacctattactgggcactggaaatacagggtggacagcacagccgaggccccgtccgtgtggaccggacattccagtgcagctgagagccacttccactcgtgagagaatctacccgtgacagagctgcgtggaagctgacaggaggcccctctcgggaggtgacgcagaaactgggaccgggaaaatgacgcagggcccatgtgcggagacccagggaaggggaatgcaggcagcaggcgcagcacgggtaaggcccaaaggcgcga-CAGGGAGACTCCACTCACAGCTGGGCGCCCAGGAGTGCCGCCGGCTTCTGGtgtttt----gttttgttttttttttctttttttttttttttttttttttttgagatgaagtctcactctgccacccaggctggagtgcggtggtgtgatct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56915791 683 +  60714840 CCAAAGTGGTTTTCGGCAGGGATTATGAATTAGGTGTCCAGTGTGTAACACACAGAGACACCGTCTCGTTCTCTGTGTGAGAAGGA-GGGGTTGCGGCACACCCgtcatgaatacgagctctggagcaggagagacgggttcaaaccctggctccaccccgaccagctgcatgatcctgcccaagtcacatcgcttctctgtgactcagtttactccttgtaaaaaaaaaaaaaaaaa--ggataataacatcacctgcctggtacaactgtATAGTtactcattcggtaagtattttctaa--------------gcactggaaatacagggtggacagcacagccgaggccccgtccgtgtggaccggacattccagtgcagctgagagccacttccactcgtgagagaatctacccgtaacagagctgggtggaagctgacaggaggcccctctcaggaggtgacacagaaactgggaccgggaaaatgaggcagggcccacatgcggagacccagggaaggggaatgcaggcagcaggcacagcacaggtaaggcccaaaggcgggagcaggGAGACTCCACTCACAGCTGGGTGCCCAGGAGTGCCGCCAGCTTCTGttgtttt-------------------------gtttttggtcttttcttttttgagatgaagtctcactccgccacccaggctggagtgcagtggtgtgatct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103386706 674 - 106955855 CCGAAGTGGTTTTCAGCGGGGATCATGAATTAGGTGTCCAGTGCGTAACACAC--ACACACCGTCTCGTTCTCTGTG---GGAGGA-GGGGTTGCAGCACACCCGTCCTgaatacgagctctggagcaggacagacggcttcaaaccctggctccaccccagccagctgcatgatcctggccaagtcacatcgcttctctgtgactcagtttactccttgttaaaaaaaaaa--------ggataacatcatcacctgcctggtacaactgtACAGttactcattcagtaagtattttctaagcacctgttactgggcactggaaatacagg-----------------------------gtggaccggacaTTCCAGTGCAGCTGAGAGCCACTTCCACTCGTGAGAGAATCTACCCGTGACAGAGCTGTGTGGAAGCTGACAGGAGGCCCCCCTCAGGAGGTGACGCAGAAACTGGGACCAGGAAAATGAAGCAGGGCCCACGTGCGGAGACCCAGGGAAGGGGAATGCAGGCAGCAGGCACAGCACGGGTAAGGCCCAAAGGCAGGAGCAGGGAGACTCCACTCACGGCTGGGCACCCAGGAGTGCCGCTGGCTTCTGTTGTTTGTTTGGTTTTGGtttttt--------cttctttttttttttttttttgagatgaagtctcactctgccacccaggctggagggcagtggtgtgatct
i nomLeu3.chr10                 C 0 M 1272
s rheMac3.chr19                  60689523 671 +  64156825 CCGAAGTGGCTCTCAGCGGGGATCATGAATTAGGTGTCCAGTGCGTAACACACACAGACACCGTCCCGTTCTCTGTGTGAGAAGGt-ggggttgcagcacacctg--------------------------------agttcaaaccctggctccaaccagaccagctgcctgaccctggccaagtcacatcgcttctctgtgacgcagtttactcctcattagaaaaaaaaaaaa----ggataacagcatcacctgcctggtgcgactgtATAGttactcattcggtaagtattttctaagcatctattactgggcactggaaatacagggtggacagcacagccgaggccccgtccgcatagaccggacattccagtgcagctgagacccgcttccactcgtcagagaatctacccgtgacagagctgcatgggagctgacaggaggcccctctcaggagctgacacaaaagctgggaccaggaaaatgaggcagggcgcacgtgcggagacccagggaaggggaatgcaggtagcgggcacatcgcaggtgaggccccaaggcgggagcaggGAGACTCCACTCACAGCTGGGGACCCGGGAGTGCCGTCGGCTTCTGCTGTTTT----GGTTTGTT-------------Tttttctttttttttttttttgagatgaagtctcactctgccacccaggctggagtgctgtggtgtgatct
i rheMac3.chr19                 I 1362 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e chlSab2.chr6                   47641103  43 +  50890351 I
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756  16 +  59248254 I

a score=44226.000000
s hg38.chr19_GL949751v2_alt        969856 91 +   1002683 tggcccatggcccactgcaacctctaccgcctgggttcaggcgatt-------ctgctgcctcagcctcccgagtactgggattacaggtgcccgcca
s panTro4.chr19                  59964070 91 +  63644993 tggcccgtggcccactgcaacctctaccgcctgggttcaagcgatt-------ctgctgcctcagcctcctgagtactgggattacaggtgcctgcca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56916474 98 +  60714840 tggcccatggcccactgcaacctctaccgcctgggttcaagcgattctgctgcctgctgcctcagcctcccgagtactgggattacaggtgcccgcca
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60690194 84 +  64156825 -------tggctcactgcaacctctacagcctgggttcaaatgatt-------ctcctgcctcagcctcccgagtactgggattacaggtgcctgcca
i rheMac3.chr19                 C 0 I 1076
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e chlSab2.chr6                   47641103 43 +  50890351 I
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756 16 +  59248254 I

a score=108789.000000
s hg38.chr19_GL949751v2_alt        969947 436 +   1002683 ccgcaccctgctaatttttgcatttttagtagagacggggtttcaccatcttggtcaggctggtcttgaattcttcacctcgtgatccacccgcctctgcctcccaaagtgcagggattacaggtgtgagccaccgcgcccagccTGtttttttttttttctttttatgagagggaagctcactcagtggcccaggctggagtgcagtggcgcgatctcagctcacagcaacctccgccgccagggctcaaacgatcctcccacctcagccttccacatagctg-aaccacaggcgcccgacaccacaagcagctacttttaaaattttttgtagaaatggggtttggctatgttgcttaggctggtctcgaatttctgagcttaggcaattcgcccacctcggcctcccaaagtgctgggattgcaggcgtgggcc
s panTro4.chr19                  59964161 436 +  63644993 ccgcaccctgctaatttttgcatttttagtagagatggggtttcaccatcttggtcaggctggtcttgaattcttcacctcgtgatccacccgcctctgcctcccaaagtgcagggattacaggtgtgagccaccgcgcccagccTGtttttttttttttctttttatgagagggaagctcactcagtggcctaggctggagtgcagtggcgcgatctcagctcacaacaacctccgccgccagggctcaaacgatcctcccacctcagccttccacatagctg-aaccacaggcgcccgacaccacaagcagctacttttaaaattttttgtagaaatggggtttggctatgttgcttaggctggtctcgaatttctgagctcaagcaattcgcccacctcggcctcccaaagtgctgggattacaggcatgggcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56916572 424 +  60714840 ccgcacccggctaatttttgcatttttagtagagacggggtttcaccatcttggtcaggctggtcttgaattcttgacctcgtgatccacccgcccccgcctcccaaagtgctgggattacaggtgtgagccaccacgcccagccTG-------Ctttttctttttatgagagggaatctcactcagtggcccaggctggagtgcagtggctcaacctcagctcactgcaacctccgccgccagggctcaaacgatcctcccaactcagccttccacatagctgaaaccataggcgcccgacaccacgagcagctacttttaaa--tttttgtagaaatggggtttggctatgttgcctaggctggtctcgaatttct--acctcagcaatccgcccacctcagcctcccaaagtgctggga-tacaggcatggg-c
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e chlSab2.chr6                   47641103  43 +  50890351 I
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=17769.000000
s hg38.chr19_GL949751v2_alt        970383 54 +   1002683 acagtgcctggccTGTTGTTTTGTTTATCTGGGAACTGCCTCAACTTTTttttt
s panTro4.chr19                  59964597 48 +  63644993 acagtgcctggtcttttgttttgtttATCTGGGAACTGCCTCAAC------ttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56916996 51 +  60714840 aca-tgcctggccTGTTG-TTTGTTTATCT-GGAACTGCCTCAACTTTTTTTTT
i ponAbe2.chr19                 C 0 I 803
s chlSab2.chr6                   47641146 47 +  50890351 ACAGTGCCTGGCCTGTTGTCTTGTTTATCTGGGAACTGCCTCAACCt-------
i chlSab2.chr6                  I 43 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756 16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=37043.000000
s hg38.chr19_GL949751v2_alt        970437 137 +   1002683 ttttttttttttttggacacagggtctcaccccgagtgcagtggtacaatcaaagctcactgcaggccgggcgtggtggctcacatctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtca
s panTro4.chr19                  59964645 137 +  63644993 ttttttttttttttggacacagggtctcaccccgagtgcagtggtacaatcaaagctcactgcagTccgggtgcggtggctcacatctgtaatcccagcactttgggagaccgaggcgggcagatcacctgaggtca
i panTro4.chr19                 C 0 C 0
s chlSab2.chr6                   47641193 137 +  50890351 ttttttttttttttggacacagggtctcaccctgagtgcagtggtacaatcaaagctcactgcaggccaggcgcggtggctcacttctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtca
i chlSab2.chr6                  C 0 I 12
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56917047 803 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=13057.000000
s hg38.chr19_GL949751v2_alt        970574 138 +   1002683 accagcctgaccaacatggtgaaaccctgtctctacctaaaacaaaaaagtAgccgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattatttgaaaccaggagatggaggttg
s panTro4.chr19                  59964782 138 +  63644993 accagcctgaccaacatggtgaaaccctgtctctacctaaaacaaaaaagtAgccgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattatttgaaaccaggagatggaggtta
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56917047 803 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e chlSab2.chr6                   47641330  12 +  50890351 I
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=19582.000000
s hg38.chr19_GL949751v2_alt        970712 74 +   1002683 cagcctgaccaacaggaagaaaccccgtctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctg
s panTro4.chr19                  59964920 74 +  63644993 cagcctgaccaacatgaagaaaccccgtctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctg
i panTro4.chr19                 C 0 C 0
s chlSab2.chr6                   47641342 74 +  50890351 cagcctgaccaacatgaagaaacgccgtctctattaaaaatacaaaattagccaggcatggtggcgcatgcctg
i chlSab2.chr6                  I 12 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56917047 803 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e papAnu2.chr19                  47939674 1261 +  51301725 I
e macFas5.chr19                  55829756 16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=13407.000000
s hg38.chr19_GL949751v2_alt        970786 26 +   1002683 taatcccagctactcgggaggctgag
s panTro4.chr19                  59964994 26 +  63644993 taatcccagctactcgggaggctgag
i panTro4.chr19                 C 0 C 0
s papAnu2.chr19                  47940935 26 +  51301725 taatcccagttactcggaaggttgag
i papAnu2.chr19                 I 1261 C 0
s chlSab2.chr6                   47641416 26 +  50890351 taatcccagttactcggaaggttgag
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56917047 803 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e nomLeu3.chr10                 103387380 1272 - 106955855 M
e macFas5.chr19                  55829756 16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=236845.000000
s hg38.chr19_GL949751v2_alt        970812 317 +   1002683 gcaggagaatcacttgaacccaggaggtggaggatgcc-----------------------gtgagccaagatcccgtcattgca--ccagcctgggcaacaagagcaaaactccgtctt--aaaaaaaaaaaaaaaaaaTCCctcactgcagcctcaacctcccaggctcaagcaatcctcccacctccacctcccaagtagttgggactacaagtgcacaccatcacgcctgcctcattgttttttatttt----------tttttt----gagatggagtctcactctgtcacccaggctggagtgcagtggcgccatctcggctcactgcaagctccacctcccgggttcacg----------------------c
s panTro4.chr19                  59965020 341 +  63644993 gcaggagaatcacttgaacccaggagatggaggatgctgaacccaggagatggaggatgcagtgagccaagatcccgccattgca--ccagcctgggcaacaagagcaaaactccgtctttaaaaaaaaaaaaaaaaaaaTCCctcactgcagcctcaacctcccaggctcaagcaatcctcccacctccacctcccaagtagttgggactacaagtgcacaccatcatgcctgcctaattgttttgta-ttt----------tttttt----gagatggagtctcactctgtcacccaggctggagtgcagtggcgccatctcggctcactgcaagctccagctcccgggttcaca----------------------c
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103388653 320 - 106955855 gcaggagaatcacttgaacccaggaggtggaggatgca-----------------------gtgagccaagatcccaccattgta--ccagcctgggcaacaagagcaaaactccgtctc--aaaaaaaaaaaaaacaaa-aCctcactgcagcctcaacctcccaggctcaagcaatcctcccacctccacctcccaaatagttgggactacaagtgcacaccatcacgcctgcctaattgttttgtttttt----------tttttttttggagatggagtctcactctgccacccaggctggagtgcagtggcgccatctcggctcactgcaagccccacctcccgggttcaca----------------------c
i nomLeu3.chr10                 M 1272 C 0
s papAnu2.chr19                  47940961 317 +  51301725 gcaggagaatcacttgaacccaggaggcggaggttgta-----------------------gtgagccgagatcctggcattgca--ccagcctgggaaacaagagcaaaactccgtctc--aaaaaaaaaaa---------cctcactgcagcctcaacctcccaggctcaagcaatcctcccacctcagcctcccaagtaggtgggactacaggtgcacaccatcatgtctgcctaattgttttttgtttttttgttttg-tttttt----gagacggagcctcgctctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaagctccgcctccctggttcagg----------------------c
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47641442 339 +  50890351 gcaggagaatcacttgaacccaggaggcggaggttgca-----------------------gtgagccgagatcgtgccattgcactccagcctgggcaacaagagcaaaactccgtctc--aaaaaaaaa------------ctcactgtagcctcaacctcccaggctcaagcaatcctcccacctcagcctcccaagtagttgggactacaggtgcacaccatcacgcctgcctaattgttttttgtttttttgttttgttttttt----gagacggagtcacactctgtcgcccagactggagtgcagtggcgcaatctcagctcactgcaagctccacctcccaggttcaggccattctcctcccgggttcacac
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56917047 803 +  60714840 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=116073.000000
s hg38.chr19_GL949751v2_alt        971129 115 +   1002683 cattctcctgcctcagcctcccaagtagctggg-ttacaggtgcccgccaccacgcccggctaattttttt-------------------------gtgtttcttagtagacacggggtttcaccgtgttggccaggatgg
s panTro4.chr19                  59965361 140 +  63644993 cattctcctgcctcagcctcccaagtagctggg-ttacaggtgcccgccaccacgcccggctaatttttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtttcaccgtgttggccaggatgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56917850 115 +  60714840 cattctcctgcctcagcctcccaagtagctggg-ttacaggtgcccaccaccatgcccggctaactttttt-------------------------gtattttttagtagacacggggtttcaccgtgttagccaggatgg
i ponAbe2.chr19                 I 803 C 0
s nomLeu3.chr10                 103388973 115 - 106955855 cattctcctgcctcagcctcccaagtagctggg-ttacaggtgcccgccaccacacccggctaattttttt-------------------------gtattttttagtagacacagggtttcaccgtgttagccaggatgg
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47941278 115 +  51301725 cattctcctgcctcagcctcctgagtagctggaactacaggaacccgccaccacgactggctaattttttt-------------------------gta-tttttagtagagacggggtttcaccgtgttagccaggatgg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47641781 116 +  50890351 cattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccactgcacccagctaatttttct-------------------------gtattttttagtagagacggggtttcaccatgttagccaggatga
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756  16 +  59248254 I
e rheMac3.chr19                  60690278 1076 +  64156825 I

a score=863411.000000
s hg38.chr19_GL949751v2_alt        971244 493 +   1002683 tctcgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtga--------gcctg-cacgcctgcctgattgttttgtattttttgtagagatgaggtcttgctatgttgcccaggctgatctcaaactccCTGATAAACAAGGCTGTGGGTACCTGCTTCCTGGGGCTCTTTGCTTTGTGTTCTTTCTAGTCGGGAGCTGGGAAGAGCCACAGCTTCCAGCTTTGTCAGAGTGTCATCTCACAaac--tgatcttcccaaaacttctgtctcccaaagtgccgggatgacaggcgtgaaccgctgcacctggccTGCCCCAGTGTGGTAGAATACACACCACATAAAATGGACGATCTTCACTATTTTTAAATCCACTGCTGTCTTTATTCCTGGCTGTTGATCTTAGGAAAACACCAAGAAGCTGGTACTTGATTTGCT--AAAAAAGTCACAGACACAGCTTTACTTAATCCTCTAGAG
s panTro4.chr19                  59965501 503 +  63644993 tctcgatctcctgaccttgtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccg-cacgcctgcctgatcgttttgtattttttgtagagatgaggtcttgctatgttgcccaggctgatctcaaactccCTGATAAACAAGGCTGTGGGTACCTGCTTCCTGGGGCTCTCTGCTTTGTGTTCTTTCTAGTCTGGAGCTGGGAAGAGCCACAGCTTCCAGCTTTGTCAGAGTGTCATCTCACAAACTgtgatcttcccaaaacttctgtctcccaaagtgccgggatgacaggcgtgaaccactgcacctggccTGCCCCAGtgtgatagaatacacaccacataaaatggaccatcttcactatttttaaatCCACTGATGTCTTTATTCCTGGCTGTTGATCTTAGGAAAACACCAAGAAGCTGGTACTTGATTTGCT--AAAAAAGtcacagacacagctttacttaatcctctagag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56917965 502 +  60714840 tctcaatctcctgaccttgtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcctg-caagcctgcctaattgttttgtattttttgtacagatgaggtcttgctatgttgcccaggctgatctcaaactccCTGATAAACAAGGCTGTGGGTACCTGCTTCCTGGGGCTCTTTGCTTTGTGTTCTTTCCAGCCTGGTGCTGGAAAGAGCCACAGCTTCCAGCTTTGTCAGAGTGTCATGTCACAAACTgtgatcttcccaaaacttctgtctcccaaagtgccaggataacaggcgtg-accactgcacctggccTGTCCaaatgtggtagaatacacaccacataaaatgtaccatcttcactatttttaaatCCACTGATGTCTTTATTCCTGGCTGTTGATCTTAGGAAAACACCAAGAAGCTGGTACTTGATTTGCT--AAAAAAGTCACAGACACAGTTTTACTTAATCCTCTAGAG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103389088 505 - 106955855 tctcgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccacgccca-caagcctgcctaattgttttgtattttttgtagagatgaggtcttgctatgttgcccagactgatctcaaactccCTGATAAACAAGGCTGTGGGTACCTGCTTCCTGGGGCTCTTTGCTTTGTGTTCTTTCTAGTCTGGAGCTGGAAAGAGCTACAGCTTCCAGCTCTgtcagggtgtcatctcacaaactgtgatcttcccaaaacttctgtctcccaaagtgccaggaagacaggcgtgagccactgcacctggccTGCCCaaatgtggaagaatacacaccacataaaatgtaccatcttcactatttttaaatCCACTGATGTCTTTATTCCTGGCTGTTGATCTTAGGAAAACACCAAGAAGCTGGTACTTGGTTTGCTAAAAAAAAGTCACAGACACAgctttacttaatcctctagtg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60691354 498 +  64156825 TctccatctcctgaccttgtgatccacccaccttggcttcccaaagtgctgggattacacgcgtgagccaccgcgcccatcacgcctgcctaattgttttgtattttttgtagagatgaggtgttgctctgttgcccaggctgatctcaaactccCTGGTGAACAAGGCTGTGGGCA----CTTCCTGGGGCTCTTTGCTTTGCGTTCTTTCTAGTCTGGCGCTGGAAAGAGCTGCGGCTTCCAGCTTTGTCAGAGTGTCA-CTCACAAACTgtgatcttcccaaagcttctgtctcccaaagtg-cgggatcacaggcgtgaacccttgcaccggaccTGCCCaaatgtggcagaatacacacgacataaagtgcaccatcttcactatttttaaatCCACTGATGTCTTCATGCCTGGCTGTTGATCTTAGGAAAACACCAAGAAGCTGGTACTTGATTTGCT--AAAAATGTCACAGACACAGCTTTACTTCATCCTCTAGAG
i rheMac3.chr19                 I 1076 I 72
s papAnu2.chr19                  47941393 499 +  51301725 tctcgatctcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacacgcgtgagccaccacacccatcacGCCTGCCtaattgttttgtactttttgtggagatgaggtcttgctatgttgcccaggctgatctcaaactccctgaTAAACAAGGCTGTGGGCA----CTTCCTGGGGCTCTTTGCTTTGCGTTCTTTCTAGTCTGGCGCTGGAAAGAGCCACGGCTTCCAGCTTTGTCAGAGTGTCA-CTCACAAACTGTGATCTTCCCAAAACTTCTgtttcccaaagtgccgggatcacaggcgtgaacccTTGCACCTGGCCTGCCCAAATGTGGCAGAATACACATGACATAAAATGCACCATCTTCACTATTTTTAAATCCACTGATGTCTTCACGCCTGGCTGTTGATCTTAGGAAAACACCAAAAAGCTGGTACTTGATTTGCT--AAAAATGTCACAGACACAGCTTTACTTCATCCTCTAGAG
i papAnu2.chr19                 C 0 I 71
s chlSab2.chr6                   47641897 499 +  50890351 tctcgatctcctgaccttgtgatccgcccgccttagcctcccaaagtgctgagattacaggcatcagccaccgcgcccatcacgcctgcctaattgttttgtattttttgtagagatgaggtcttgctctgttgcccaggctgatctcaaactccCTGATGAACAAGGCTGTGGGTA----CTTCCTGGGGCTCTTTGCTTTGCATTCTTTCTAGTCTGGCACTGGAAAGAGCCACGGCTTCCAGCTTTGTCAGAGTGTCAGCTCACAAACTgtgatcttcccaaaacttctgtctcccaaagtg-cgggatcacaggcgtgaacccttgcacctggccTGCCCaaatgtggcagaatacacatgacataaaatgcaccatcttcactatttttaaatCCACTGATGTCTTCATGCCTGGCAGTTGATCTTAGGAAAACACCAAGAAGCTGGTACTTGATTTGCT--AAAAATGtcacagacacagctttacttcatcctctagag
i chlSab2.chr6                  C 0 I 72
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e macFas5.chr19                  55829756  16 +  59248254 I

a score=276317.000000
s hg38.chr19_GL949751v2_alt        971737 117 +   1002683 Aggctgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggtggctggatcatgaggtcaggagatcgagaccatcctggctaacacggt--gaaaccccgtctcta
s panTro4.chr19                  59966004 117 +  63644993 aggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggtggccggatcatgaggtcaggagatcgagaccatcctggctaacacggt--gaaatcccgtctcta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56918467 117 +  60714840 Aggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtcaggagattgagaccatcctggctaacacggt--gaaaccccgtctcta
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103389593 117 - 106955855 aggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcatgaggtcaggagattgagaccatcctggccaacacggt--gaaaccccgtctcta
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60691924 117 +  64156825 Aggccgggcatggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacaaggtcaggagatcgagaccatcctggctaacccggt--gaaaccctgtctcta
i rheMac3.chr19                 I 72 C 0
s macFas5.chr19                  55829772 117 +  59248254 Aggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaacaccgt--gaaaccccgtctcta
i macFas5.chr19                 I 16 C 0
s papAnu2.chr19                  47941963 119 +  51301725 cggccgggcgcggtggctcaagcctgtaatcccagcactctgggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaatgcggtacgaaaccccgtctcta
i papAnu2.chr19                 I 71 M 2539
s chlSab2.chr6                   47642468 117 +  50890351 Aggccgggcgcggtggctcaagcctgtaatcccagcacttagggaggcggaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacagt--gaaaccccgtctcta
i chlSab2.chr6                  I 72 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I

a score=10881.000000
s hg38.chr19_GL949751v2_alt        971854 8 +   1002683 gtaaaaaa
s panTro4.chr19                  59966121 8 +  63644993 gtaaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56918584 8 +  60714840 ctaaaaaa
i ponAbe2.chr19                 C 0 I 135
s nomLeu3.chr10                 103389710 8 - 106955855 ctaaaaaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60692041 8 +  64156825 ctaaaaaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55829889 8 +  59248254 ctaaaaaa
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47642585 7 +  50890351 -ctaaaaa
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=227149.000000
s hg38.chr19_GL949751v2_alt        971862 173 +   1002683 tataaaaaattagccgggcgtggtggcaggcgcctgtagtcccccgccactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagcttggagtgagccgagatgt-gccactgtcctccagcctgggcgacaaagcaagataccgtctcag--------aaaaaaaaaaaa-a
s panTro4.chr19                  59966129 142 +  63644993 tataaaaaattagccaggcgtggtggcgggcgcctgtagtcccccgccact--------------------------------cgggaggcggagcttggagtgagccgagatgt-gccactgtcctccagcctgggcgacaaagcaagataccgtctcag-------aaaaaaaaaaaaa-a
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56918727 172 +  60714840 tacaaaagattagccgggcgtggtggcgggcgcctgtagt-ccccgccacttggggggctgaggcaggagaatggcatgaacccgagaggtggagcttgcagtgagccgagatgt-gccactgcactccagcgtgggcgacagagcaagacaccgtctcaa--------aaaaaaaaagaa-a
i ponAbe2.chr19                 I 135 C 0
s nomLeu3.chr10                 103389718 180 - 106955855 tataaaaaattagccgggcgtggtggcaggcgcctgtagt-ccccaccactcaggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatgc-gccactgctctccagcctgggcgacagagcaggacactgtctcaaaaaaaaaaaaaaaaaaaaaa-a
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60692049 171 +  64156825 tacaaaaaactagccgggcgaggtggc-agcgcctgtagt-ccccgctactcgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgagctgagatccggccaccgcactccagcccgggcaacagagcgagactccatctcaa--------aaaaaaagaaaa--
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55829897 169 +  59248254 tacaaaaaactagccgggcgaggtggc-ggcgcctgtagt-cccaggtactcgggaggctgaggcaggagaatggcgtcaaccagggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcgacagagcgaga-tccgtctcaa--------aaaaaaa-aaaa--
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47642592 171 +  50890351 tacaaaaaattagccgggcgtggtggtgggtgcctgtagt-cccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagtttgcagtgagccgagatcacgccactgcactccagcttgggcaacagagcgaga--gagtctcaa--------aaaaaaaaaaaaa-
i chlSab2.chr6                  C 0 I 19
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=244087.000000
s hg38.chr19_GL949751v2_alt        972035 250 +   1002683 CCCCTCTAGAGAATCCCAGAAAATAGAagga---attattccatttcccggaagaggaacgtgtggctaagagaggaggcatcacctgcccaggtgtgtccagccggGGTCCT-------------------CACTGTCTCAGGGACCTCAGTGCTCCGGACACCTGTGTCCACAAGCCAGAGACAGGATCAGAGGCGCCCTGGGTGggattgcctgggacagtgtgcatgaaggtgacagtgctgtacctggtacacagcaggtgcttaat
s panTro4.chr19                  59966271 253 +  63644993 cccctctagagaatcccagaaaatagaaggaattattattccatttcccggaagaggaacgtgtggctaagagaagaggcatcacctgcccaggTGTGTCCAGCCGGGGTCCT-------------------CACTGTCTCAGGGACCTCAGTGCTCCGGACACCTGTGTCCACAAGACAGAGACAGGATCAGAGGCGCCCTGGGTGggattgcctgggacagtgtgcatgaaggtgacagtgctgtacctggtacacagcaggtgcttaat
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56918899 267 +  60714840 aTCCTCTAGAGAATCCCAGAAAATAGAAGGA---ATTATTCCATTTCCCGGAAGAGGAACGTGTGGCTAAGAG--GAGGCATCACCTGCCCAGGTGTGTCCAGCCTGGGTCCTCGCTGCTCACAAGGCCCTGCACTGTCTCAGGGACCTCAGTGCTCTGGCCACCTGTCTCCACAAGCCAGAGACAGGATCAGAGGCGCCCCGGGTGGGACTGCCTGGGACAGTGTGCATGAAGGTGACAGTGATgtacctggtacacagcaggtgcttaat
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103389898 268 - 106955855 atcttctagagaatcccagaaaatagaatt----attattccatttcccggaagaggaacgtgtggctaagagaggaggcatcacctgcccaagTGTGTCCAGCCTGGGTCCTCGCTGCCCACAAGGCCCTGCACTGTCTCAGGGACCTCAGTGCTCTGGACACCTGTCTCCACAAGCCAGAGACAAGATCAGAGGCGCCCTGGGTGggactgcctgggacagtgtgcatgaaggtgacagtgctgtacctggtacacagcaggtgcttaat
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60692220 198 +  64156825 -------------------------------------------------------------------------aGGAGGCATCACCTGCCCAGGTGCATCCAGCCTGCATCCTTGCTGCCCACAAGGCCCTGCACTGTCTCA-GGACCTCAGTGCTCTGGACACCTGTCTCCACAAGCCAGAGACAGGAGGAGAGGCGCCCCGGGCGggattacctcggacagtgtgcatgaaggcaacagtgctgtacctggtacacagcaggtgcttaat
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55830066 198 +  59248254 -------------------------------------------------------------------------aGGAGGCATCACCTGCCCAGGTGCATCCACCCTGGGTCCTTGCTGCCCACAAGGCCCTGCACTGTCTCA-GGACCTCAGTGCTCTGGACACCTGTCTCCACAAGCCAGAGATAGGATGAGAGGCGCCCCGGGCGggattacctcggacagtgtgcatgaaggcaacagtgctgtacctggtacacagcaggtgcttaat
i macFas5.chr19                 C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     56831 218 +    138250 I
e chlSab2.chr6                   47642763  19 +  50890351 I
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=553585.000000
s hg38.chr19_GL949751v2_alt        972285 388 +   1002683 aaatgTT-CATCCACCTCTGAGACTCTGAGGCATTGCCCTCTCACTGTTCTTTGTGATCTCACCGTAGTGCCTCTCACCTACCCGACAACAGTGCCG----GCTCTTTCTTGATCCCCAAGGGCACAGCAGGGG-CTCAGT------------atgaatgaatgaatgaaccaacgaatg------------TGCACCTGCACCTGCCTCCCTAGGGCTGTGAGTGGCACAAGGACAGCTCTGGTTCATCTCACACCTCCAGCACCT-GGTCAGGTCTGAGATCACGTCTGCTAAATAAATGAGGTCCCACAACTCCCCCATTCCTTGTTCATTTCCTGAGTACCCGTTTACTGAGCGGGGCACATTGACTCTGAAGAAGAAAGCTTTGGCCCTTT-CAGTGCCAGACTAGAAAAGAAAC
s panTro4.chr19                  59966524 378 +  63644993 aaatgTT-CATCCACCTCTGAGACTCTGAGGCATTGCCCTCTCACTGTTCTTTGTGATCTCACCATAGTGCCTCTCACCTACCCGACAA------------------TCTTGATCCCCAAGGGCACAGCAGGGG-CTCAGT--------atgaatgaatgaatgaatgaaCCAACAAACG------------TGCACCTGCACCTGCCTCCCTAGGGCTGTGAGTGGCACAAGGACAGCTCTGGTTCACCTCACACCTCCAGCACCT-GGTCAGGTCTGAGATCACGTCTGCTAAATAAATGAGGTCCCACAACTCCCCCGTTCCTTGTTCATTTCCTGAGTACCTGTTTACTGAGCGGGGCACATTGACTCTGAACAAGAAAGCTTTGGCCCTTT-CAGTGCCAGACTAGAAAAGAAAC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919166 347 +  60714840 aaatgtt-cattCACCTCTGAGACTCTGAGGCATTGC---------------------------------CCTCTCACCTACTCCACAACAGTGCCG----GCTCTTTCTTGATCCCCAAGGGCACAGCAGGGG-CTCAAT------------ATGAATGAATGAATGAACC--------------------TGCACCTGCACCTGCCTCCCTATGGCTGTGAGTGGCACAAGGACAGCTCTGGTTCATCTCACACCTCCAGCACCC-GGTCAGGTCTGAGATCACATCTGCTAAATAAATGAGGCCCCACAACTCCCATTTTCCTTGTTCATTTCCTGAGTACGCTTCTACTGAGCAGGGCACATTGACCCTTAACAAGAAAGCTTTGGCCCTTT-CAGTGCCAGACTAGAAAAGAAAC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103390166 407 - 106955855 aaatgTT-CATCCACCTCTGAGA--CTGAGGCATTGCCCTCTCACTGTTCTTTGTGATCTCACCATAGTGCCTCTCACCT---CCACAACAGCGCCG----GCTCTTTCTTGATCCCCAAGGGCACAGCAGGGG-CTCAATatgaatgaatgaatgaatgaatgaatgaacgaacgaatgaaCGAACAAACCTACACCTGCACCTGCCTCCCTATGGCTGTGAGTGGCACAAGGACAGCTCTGGTTCATCTCACACCTCCAGCACCT-GGTCAGGTCTGAGATCACGTCTGCTAAATAAATGAGGTCCCACAACTCCCTCTTTCCTTGTTCATTTCCTGAGTACCCATTTACTGAGCGGGGCACATTGACTCTGAACAAGAAAGCTTTGGCCCCTT-CAGTGCCAGACTAGAAAAGAAAC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60692418 396 +  64156825 aaatatt-catCCACCTCTGAGACTCTGAGGC--TGT--TCTCACTGTTCTTTGTGATCTCACCATAGCGCCTCTCACCTACTCCACAACAGCGCCA----GCTCTTTCTTGATCCCCAAGGGCACAGCAGGGG-CTCAAT------------atgaatgaatgaatgaatgaatgaatgaatgagcgaatCTGCACCTGCACCTGCCTCCCTATGGCTATGAGTGGCACAAGGACAGCTCTGGTTCACCTCACACCTCCAGCACCT-GGTCAGGTCTCAGATCGCCTTTACTAAATAAATGAGGTCCCACAACTCCCCCTTTCCTTGTTCATTTCCTGAGTACCCGTTAACTGAGTGGGGCACATTGACTCCGAACAAGAAAGCTTTGGCCCTTT-CAGTGCCAGACTAGAAAACAAAC
i rheMac3.chr19                 C 0 I 37
s macFas5.chr19                  55830264 404 +  59248254 aaatatt-catCCACCTCTGAGACTCTGAGGC--TGT--TCTCACTGTCCTTTGTGATCTCACCATAGCGCCTCTCACCTACTCCACAACAGCGCCA----GCTCTTTCTTGATCCCCAAGGGCACAGCAGGGG-CTCAAT----atgaatgaatgaatgaatgaatgaatgaatgaatgaatgaGCGAATCTGCACCTGCACCTGCCTCCCTATGGCTATGAGTGGCACGAGGACAGCTCTGGTTCACCTCACACCTCCAGCACCT-GGTCAGGTCTCAGATTGCCTTTACTAAATAAATGAGGTCCCACAACTCCCCCTTTCCTTGTTCATTTCCTGAGTACCCGTTAACTGAGTGGGGCACATTGACTCCGAACAAGAAAGCTTTGGCCCTTT-CAGTGCCAGACTAGAAAACAAAC
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     57049 356 +    138250 aaaCGTTACACCCACCT--------CTAAGGCATCACCCTCTCCCTGTTCTTTGTGATCTTACCACAGCGCCTCTCGCCTACTCCACAACATCCACAGTGCGCTCCCTCTTAATCCCCAAGGGCACAGGAGGGGACTCAAC------------ACGTGTGAATGAGTGA------------------------GCGCCTGCgcctgcctccctacagctgtgagtggcacgaggacagctttagttcatctcacacctccagcacctgggtcaggtctcagatcacgtttgctaaataaatgaGGTCCCACAACACCC-CATTCTTCGTCCACTT---------------ACTGAGCAGGGCACATCGACTCTGACCAAGAAAGCTTTGGCCCTTTCCAGTGCCAGACAAGGAAAC----
i calJac3.chr22_GL285922_random I 218 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e chlSab2.chr6                   47642763  19 +  50890351 I
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=8955.000000
s hg38.chr19_GL949751v2_alt        972673 9 +   1002683 AAAGCAgct
s panTro4.chr19                  59966902 9 +  63644993 AAAGCAgct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919513 9 +  60714840 AAAGCagct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103390573 9 - 106955855 AAAGCAgct
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55830668 9 +  59248254 AAAGTAgcc
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     57405 9 +    138250 AAAGGGGTC
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e chlSab2.chr6                   47642763 19 +  50890351 I
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60692814 37 +  64156825 I

a score=53888.000000
s hg38.chr19_GL949751v2_alt        972682 38 +   1002683 gggcatggtggctcatgcctgtaatcccagcactttgg
s panTro4.chr19                  59966911 38 +  63644993 gggcatggtggctcatgcctgtaatcccagcactttgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919522 38 +  60714840 gggcgcggtggctcacgcctgtaatcccagcactttgg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103390582 38 - 106955855 gggcgtggtggctcacgcctgtaatcccagcactttgg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55830677 38 +  59248254 gggcgcggtggctcacacctgtaatcccagcactttgt
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47642782 38 +  50890351 gggcacagtggctcacacctgtaatcccagcactttgg
i chlSab2.chr6                  I 19 C 0
s calJac3.chr22_GL285922_random     57414 25 +    138250 GGGCACGGT-GCTCATGCCTATAATC------------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60692814 37 +  64156825 I

a score=227546.000000
s hg38.chr19_GL949751v2_alt        972720 118 +   1002683 gaggctgaggcaggcggatcacaaggtcaggaattcgagaccagcctggccaacatagtgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcacccgcctata
s panTro4.chr19                  59966949 118 +  63644993 gaggctgaggcaggcggatcacaaggtcaggaattcgagaccagcctggccaacatagtgaaaccccgtctctattaaaaatacaaaaattagccgggcatggtggcacacgcctata
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919560 118 +  60714840 gaggctgaggcgggcggatcacaaggtcaggaatacgagaccagcctggccaacatagtgaaaccccatctctactaaaaatacaaaaattagccgggcgtggtggcgcacacctata
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103390620 118 - 106955855 gaggctgaggcggacagatcacaaggtcaggagttccagaccagcctgaccaacatagtgaaaccccatctctactaaaaatataaaaattagctgggcatggtggcacacacctata
i nomLeu3.chr10                 C 0 M 2381
s rheMac3.chr19                  60692851 118 +  64156825 ACgactgaggcagggggatcacaaggtcaggagttcaagaccagcctggccaacacagtgaaaccccgtctctactgaaaatacaaaaatgagccagccatggtggcacacgcctata
i rheMac3.chr19                 I 37 C 0
s macFas5.chr19                  55830715 118 +  59248254 gaggccgaggcagggggatcacaaggtcaggagttcaagaccagcctggccaacatagtgaaaccccatctctactaaaaatacaaaaatgagccagccatggtggcacacgcctata
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47642820 118 +  50890351 gaggctgaggcgtggggatcacaaggtcaggagttcaagaccagcctggccaacatagtgaaaccccatctctactaaaaatacagaaatgagccagccatggtggcacacacctata
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     57439  79 +    138250 --------------------------------------gaccagcctggccaaaacagcaaaa-cccatctctactaaaaacacaaaaatcagctgcgcgtggtggtgggcgcctgtg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=92130.000000
s hg38.chr19_GL949751v2_alt        972838 56 +   1002683 --------gtcttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggctgcagt
s panTro4.chr19                  59967067 56 +  63644993 --------gtcttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggctgcagt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919678 56 +  60714840 --------gtcttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60692969 56 +  64156825 --------gtctcgggaggctgaaggaggagaatcgcttgaacccaggaggcggaggttgcagt
i rheMac3.chr19                 C 0 M 558
s macFas5.chr19                  55830833 56 +  59248254 --------gtctcgggaggctgaaggaggagaatcacttgaacccaggaggcggaggttgcagt
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47642938 56 +  50890351 --------gtctcgggaggcttaggtaggagaatcgcttgaacccaggaggcggaggttgcagt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     57518 64 +    138250 agcccagctactcggaaggctgaggcaggagaattgctcaaactcaagaggtggacgctgcggt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=65810.000000
s hg38.chr19_GL949751v2_alt        972894 65 +   1002683 gagccaagatcgcatcattgcactccagcctgggtgacag-agcaagactccatctc-------------aaaaaaa----------------ag
s panTro4.chr19                  59967123 65 +  63644993 gagccaagatcgcatcattgcactccagcctgggtgacag-agcaagactccatctc-------------aaaaaaa----------------ag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919734 65 +  60714840 gagccaagattgcgtcactgcactctagcctgggtgacag-agcaagactccatctc-------------aaaaaaa----------------ag
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55830889 81 +  59248254 gagccgagatagtgtcactgcactccagcctgggtgacag-agcaagactccatctc-------------aaaaaaaaaaTTGGTAAgaggccag
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47642994 94 +  50890351 gagccaagatctcgtcactgcactatagcctgggtgacag-agcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaaTTGCTAAgaggccag
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     57582 66 +    138250 gagcagagatcacgccactgcactccagcctggacagcagcagcaaaactccatctc-------------aaaaata----------------aa
i calJac3.chr22_GL285922_random C 0 I 66
e canFam3.chr1                   20132918 2038 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693025 558 +  64156825 M

a score=115958.000000
s hg38.chr19_GL949751v2_alt        972959 147 +   1002683 gtcttgctctgtcatccaggttagagtgcagtggcacaaatacggctcactgcagccttgaactctcgggctcaagtgatcctcttgcctcagcctcctgagtagctgggactgtaggcacatgccaggatgcccggctaatttttt
s panTro4.chr19                  59967188 134 +  63644993 gtcttgctctgtcatccaggttagagtgcagtggcacaaacacggctcactgcagccttgaactcccgggctcaagtgatcctcttgcctcagcctcctgagtagctgggactgt-----------aggatgcccggctaa--tttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919799 147 +  60714840 gtcttgctctgtcatccaggttagagtgcagtggcacaaacacggctcactgcagccttgaactcccgggctcaagtgatcctcctgcctcggcttcatgagtagctgggactataggcacaggccaggatgcccggctaatttttt
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55830970 147 +  59248254 gtcttgctctgtagtccaggttagtgtgcagtggcacaaacacggttcactgcagccttgaactcctgggctcaagcaatcctcctgcctcagcctcctgagtagctggggctataggcacacgccaggatgcccggctaatttttt
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47643088 147 +  50890351 gtcttgctctgtcgtccaggctagagtgcagtggtgcaaacacggctccctgcagccttgaactcccaggctcaagcgatcctctggcctcagcctcctgagtagctggggctataggcacacgctaggatgcccagctaatttttt
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     57648  66 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693025 558 +  64156825 M

a score=10920.000000
s hg38.chr19_GL949751v2_alt        973106 8 +   1002683 tttttttt
s panTro4.chr19                  59967322 8 +  63644993 tttttttt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919946 8 +  60714840 tttttttt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60693583 8 +  64156825 TTTttttt
i rheMac3.chr19                 M 558 C 0
s macFas5.chr19                  55831117 8 +  59248254 tttttttt
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47643235 8 +  50890351 tttttttt
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     57648 66 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M

a score=278341.000000
s hg38.chr19_GL949751v2_alt        973114 354 +   1002683 t----aatctttggtacacacaaggtctcactatgcttcctaggctggtctc-taactcctgagctcaagcaatcctaagagaagagattttaaatgtggtcaccacaaaaacagg-----taagtatttgaggtaatgcatatgttaattagcttgatttagccattctacaatgtatacaatgtacatcatgctgtacataatatatacaagtatacatgtcaactaaacaataaaTAATTTTAGTGTATTCTTGAGTCTATTTAAAGATGAACAAGAATAGAAAAGCTAGAGGATGGTCCCAGTTTTACATAAAAATATATAAAT--ACACACACAAACCTATTATAAACAAGACTAGAAAG--A
s panTro4.chr19                  59967330 353 +  63644993 t----aatctttggtacacacaaggtctcactatgcttcctaggctggtctc-taactcctaagctcaagcaatcctaagagaagagattttaaatgtggtcaccacaaaaaca-g-----taagtatttgaggtaatgcatatgttaattagcttgatttagccgttctacaatgtatacaatgtacatcatgctgtacataatatatacaagtatacatgtcaactaaacaataaaTAATTTTAGTGTATTCTTGAGTCTATTTAAAGATGAACAAGAATAGAAAAGCTAGAGGATGGTCCCAGTTTTACATAAAAATATATAAAT--ACACACACAAACCTATTAGAAACAAGACTAGGAAG--A
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56919954 348 +  60714840 ttttaaatgtttggtactcacaaggtctcactatgcttcctaggctggtctcttaactcctgagctcaagcaaACctaagagaagagattttaaatgtggtcaccacaaaaacagg-----taagtatctgaggtaatgcatatgttaattagcttgattgagccactctacaatgtatacaatgtacatcatgttgtacataatatatacaagtgtacatgtcaactaaacaaTCAATAATTTTAATGTATTCTTGAGTCTATTTAAAGATGACCAAGAATAGAAAAGCtagaggatggtcccaattttacataaaaatatataaat--acacacac-------------acaagactggaaagaaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60693591 361 +  64156825 t----aatctttggtacacacaaggtctcactatgcctcctacgctggtctc-taactcctgagctcaagcaatcctaagagaagagattgtaaatgtagtcaccacaaaaacaggtaatataagtatttgaggtaatgcatatgttaattagcttgatttagtaattctacaatgtatacaatgtacatcatgttgtacgtaatatatacaagtgtacctgtcaactaaacaataaaTAATTTTAATGTATTCTTGAGTCTATTTAAAGATGAACAAGAATAGAAAAGCTAGAGTATGGTCCCAGTTTTACATGAAAATATATAAATTCACACACACAAACCAATTAGAAACAAGACTGGAAAG--A
i rheMac3.chr19                 C 0 M 2020
s chlSab2.chr6                   47643243 347 +  50890351 -----aatctttggtacacacaaggtctcactatgcttcctacactggtctc-taactcctgagctcatgcaatcctaagagaagagattgtaaatgtggtccccacaaaaacagg-----taagaatttgatgtaatgcatatgttaattagcttgatttagtaattctacagtgtatacaatgtacatcatgttgtacgt----tatacaagtgtacatgtcaactaaac----aataaTTTTAATGTATTCTTGAGTCTATTTAAAGATGAACAAGAATAGAAAAGCTGGagtatggtcccagttttacataaaaatatataaattcacacacacaaaccaattagaaacaagactggaaag--a
i chlSab2.chr6                  C 0 I 2
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     57648  66 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e macFas5.chr19                  55831125   0 +  59248254 C

a score=28204.000000
s hg38.chr19_GL949751v2_alt        973468 58 +   1002683 TCCA---------TAAAAGTGATTCTCCTGGGGCTGGTGCAGATCAAAGTTGTTTAGttctgtcttc
s panTro4.chr19                  59967683 58 +  63644993 TCCA---------TAAAACTGATTCTCCTGGGGCTGGTGCAGATCAAAGGTGTTTAGttctgtcttc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56920302 58 +  60714840 tcca---------taaaagtgattctcctggggttggtgcagatcaaaggtgtttAGttctgtcttc
i ponAbe2.chr19                 C 0 C 0
s chlSab2.chr6                   47643592 67 +  50890351 tccatcaaaactttaacagtgattctcctggggttggtgcagatcaaaggtgtttagttctgtcttt
i chlSab2.chr6                  I 2 I 2
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     57648 66 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e macFas5.chr19                  55831125  0 +  59248254 C
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=141911.000000
s hg38.chr19_GL949751v2_alt        973526 188 +   1002683 ttttttattgagacagagtctcactctgtcacccaggctggagtgcactggcacaatctcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcaccctgagtagctgagattacaggtgtgcaccaccacgcctggctaa-tttttgta-tttttagtagagacagggtttc
s panTro4.chr19                  59967741 188 +  63644993 ttttttattgagacagagtctcactctgtcacccaggctggagtgcactggcacaatctcagctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcaccctgagtagctgagattacaggtgtgcatcaccacgcctggctat-tttttgta-tttttagtagagacagggtttc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56920360 188 +  60714840 ttttttattgagacagagtctcactctgtcacccaggctaaaatgcagtggcacagtctcagctcaccgcaacctccgcctcccgggttcaagcaattctcctgcctcagcaccctgagtagctgggattacaggcgtgcaccaccatgcctggctaa-tttttgta-tttttagtagagacagggtttc
i ponAbe2.chr19                 C 0 M 668
s macFas5.chr19                  55831125 190 +  59248254 tttttttttgagactgagtcttgctctgtcacccaggctagagtgcagtggccagatctcagctcactgcaagctccgcctcccgggtttacgccattctcctgcctcagcctctcgagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtattttttagtagagacggagtttc
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47643661 188 +  50890351 cttttttttgagacgaagtcttgctctgtcacctaggctggaatgcagtggtgtgatctcagctcactgcaacctccgcctcccggcttcatgccattctcctgcctcagcctcccaagcaggtgggattacaggtgtgcaccaccacacccggctaa-tttttgta-tttttagtagaaacagggtttc
i chlSab2.chr6                  I 2 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e calJac3.chr22_GL285922_random     57648  66 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=8283.000000
s hg38.chr19_GL949751v2_alt        973714 15 +   1002683 accatgttggccagg
s panTro4.chr19                  59967929 15 +  63644993 accatgttggccagg
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55831315 15 +  59248254 accatgttagccagg
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47643849 15 +  50890351 accatgttggccagg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56920548 668 +  60714840 M
e calJac3.chr22_GL285922_random     57648 66 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=226360.000000
s hg38.chr19_GL949751v2_alt        973729 310 +   1002683 ctggtctcgaactcctgacctcaagggatccacctgcctcagcctcccaaagtgctgggattaacaggcgtgagccactgtgcccagccAGTTCTGTCTTCTTTACATTGCAGTATTTTATAAATGTCCCATAACAAACACATATTTCTTTAACCATGGTGGGGAAGGCACTTGATCAATAAATGCTTAATAAggtcaggtgcggtggctcacgcctgtaatcccagcactgtgggaagctgacctgggtggatcacttgagccc----------------------------------------------------------------------aggagttggagaccagcctgagcaacatggtgaaaccccagctct
s panTro4.chr19                  59967944 379 +  63644993 ctggtctccaactcctgagctcaagtgatccacccaggtcggcttcccaaagtgctgggatt-acaggtgtgagccaccgtgcccagccAGTTCTGTCTTCTTTACACTGCAGTATTTTATAAATGTCCCATAACAAACACATATTTCTTTAACCATGGTGGGGAAGGCACTTGATCAATAAATGCTTAATAAggtcaggtgcggtggctcacgcctgtaatcccagcactgtgggaagccgacctgggtggatcacttgagcccaggagttggagacaagcctgagcaacatggtgaaaccccagctctaaaaacaaaacaaaannnnnnnnnnaggagttggagacaagcctgagcaacatggtgaaaccccagctct
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55831330 309 +  59248254 ctggtctcgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggatt-acaggcatgagccactgcgcctggccagttctgtcttctttACACTGCAGTATTTTATAAATGTCCCATAACTAACACATATTTATTTAACCATGGTGGGGAAGGTACTTGATCAATAAATGCTTAATAAggccgggcacagtggctcaagcctgtaatcccagcactgtgggaagccaaggcaggtggatcacttgagccc----------------------------------------------------------------------aggagtttgaaaccagcctgagcaacatggtgaaaccccagctct
i macFas5.chr19                 C 0 I 190
s chlSab2.chr6                   47643864 309 +  50890351 ctggtctcgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggatt-acaggcatgagccaccgcacccagccagttctgtcttctttacactgcaatattttataaatgtcccataactaacacatattTATTTAACCATGGTGGGTAAGGTACTTGATCAATAAATGCTTAATAAggccgggcgcagtggctgaagcctgtaatcccagcactgtgggaggccaaggcgggtggatcacttgagccc----------------------------------------------------------------------aggagtttgaaaccagcctgagcaacatgatgaaacaccagctct
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     57714 295 +    138250 ctggtactgaactcctgacctcgagggatccaaccacctcagcctcccaaaatgctggcatt-acaagcgtgagccactgcgcccaaccAGTCCTGTCGTCTTTGCACTGCAGTATTTTATAAATGCCCCATAACAGACACTTATTTCTTTAACCATGGTGGGGAAGACACTGGATCCATAAGCACTTAATAAggccgggcgcggtggctcaagcctgtaatcccagcaatttg-------------ggtggatcagttgagccc----------------------------------------------------------------------aggagtttgagaccagcctgagcaacatagtgaaac-ccaactct
i calJac3.chr22_GL285922_random I 66 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56920548 668 +  60714840 M
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=910.000000
s hg38.chr19_GL949751v2_alt        974039 1 +   1002683 a
s panTro4.chr19                  59968323 1 +  63644993 a
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55831829 1 +  59248254 a
i macFas5.chr19                 I 190 C 0
s chlSab2.chr6                   47644173 1 +  50890351 a
i chlSab2.chr6                  C 0 I 982
s calJac3.chr22_GL285922_random     58009 1 +    138250 a
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56920548 668 +  60714840 M
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=1526.000000
s hg38.chr19_GL949751v2_alt        974040 15 +   1002683 -aaaacaaaacaaaac
s panTro4.chr19                  59968324 15 +  63644993 -aaaacaaaacaaaac
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55831830 14 +  59248254 -aaaaaaaaaaaaag-
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     58010 11 +    138250 caaaaaaaatt-----
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56920548 668 +  60714840 M
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47644174 982 +  50890351 I
e papAnu2.chr19                  47942082 2539 +  51301725 M
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=52397.000000
s hg38.chr19_GL949751v2_alt        974055 116 +   1002683 ---aataaaacaataatta--gctgtgtgtggtggcgtatgcctgtactcccagctacttgggaggctgaagtgggaggatcccttgagcccagcaggttgagactgcagtgagccatgac
s panTro4.chr19                  59968339 116 +  63644993 ---aataaaacaataatta--gctgtgtgtggtggcgtatgcctgtactcccagctacttgggaggctgaagtgggaggatcccttgagcccagcaggttgagactgcactgagccatgac
i panTro4.chr19                 C 0 I 162
s macFas5.chr19                  55831844 109 +  59248254 ---aaaaaatta---------gccagatgcggtggtgtgcttccatagccccagctactcaggagtctgaggcaggaggatcacttgagcccaagaggtcaaggctgcagggagctgtgtt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47944674 101 +  51301725 ---aacaaactaattattcaggccgggcgtggtggctcacgcctgtaatcccagcactttgagaggcagaggcaggaggatcacttgaggtcaggagttcgaga-----------------
i papAnu2.chr19                 M 2539 C 0
s calJac3.chr22_GL285922_random     58021 112 +    138250 tttttaaaatta---------gctgtgtgtggtggcataagcctgtacacccagctacttgggaggctgaactgggaggatcacttgagcccagcaggttgagactgcagtgagccctgac
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56920548 668 +  60714840 M
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47644174 982 +  50890351 I
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=124886.000000
s hg38.chr19_GL949751v2_alt        974171 319 +   1002683 tgcaccactgca-ctctagcctgggtgaca----gagatggatcctgtctc--aaac-aaaCTAATTATTCAGGTAgggcacggtggctcacacctgtaatcccagcactttgggaggccaagggaagcagatcacctgaggtcaggagttcgagac-------------------------------cagcctgaccaacatggtgaaaccctgtctctacct------------aaaacacaaaaaatt--agccaggcacggtggcgggtgcctgtaatcccagctactca--------ggaggctgaagcaggagaatcatttgaaatcgggagacggaggttgcagtgaggcaagatcacaccactgcactccag
s panTro4.chr19                  59968617 315 +  63644993 tgcaccactgca-ctctagcctgggtgaca----gagatggatcctgtctc--aaac-aaa----TTATTCAggcagggcgtggtggctcacacctgtaatcccagcactttgggaggccgagggaagcagatcacttgaggtcaggagttcgagac-------------------------------cagcctgaccaacatggtgaaaccctgtctctacct------------aaaacacaaaaaatt--agccaggcacggtggcgggtgcctgtaatcccagctactca--------ggaggctgaagcaggagaatcatttgaaatcgggagacggaggttgcagtgaggcaagatcacaccactgcactccag
i panTro4.chr19                 I 162 C 0
s macFas5.chr19                  55831953 315 +  59248254 tgtgccactgca-ctccagcctgggtgaca----gagacagaccctgtctc--aaaC-TAACTAATTATTCAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcagaggcaggaggatcacttgaggtcaggagttcgagat-------------------------------cagcctgaccaatgtggtgaaacc--gtctctacct--------------aaaacaaaaaatt--agccaggcatggtggcaggtgcctgtaatcccagctactca--------gggggctgaggcaggagaatcatttgaaaccaggagatggaggttgcagtgaggcaagatcacaccacagcactccag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47944775 305 +  51301725 ---------------ccagcctgaccaacatggtgaaactgtctctatcta--aaacacaaaaaatta-----gccaggcatggtggcgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcatttgaaaccaGGAGATGGCGGTTGCAGtga----------caccatggcactccagcctgggcaacacagcgagact--tcgtctgtctcaaaacaaacaaacaaaacataaagtc--agcggggtgcagtggctcacgcctgtaatcccagcactttg--------ggaggctaaggcagatggatcacctgaggtcaggagttcgaga-------------------------------ccag
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     58133 315 +    138250 --------tgcacctccagcctgggtgaca----gagcaagaccctgtctcaaaaac-aaaaaaTtta-----gccaggttcggtggcttctatctatagccccagctactcaggaggctgaggcaggaggatcgcttgagcccaggagatcaaggctgcagggagctgtgtctgtgccactgcactctagcctgggtgacagagacagacc------ctgcct----------caaaaaaaCTAATTATTCAgaccgggtatggtggttcatgcctgaaatcccagcacttcagcactttgggaggccaaggcaggaggaccacctgaggtcaggaatttgaga-------------------------------gtag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e ponAbe2.chr19                  56920548 668 +  60714840 M
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47644174 982 +  50890351 I
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=143688.000000
s hg38.chr19_GL949751v2_alt        974490 184 +   1002683 cctgggcaacagagcgagaccccatctgt-ctcaaaacaaacaaacaaaac--aaaGTCAgccgggcgcagtggcccacgcctgtaatcccagcactctgggaggctgaggcaggagaatcacctgaggtcaggagttccaga-------------------------------ccagcctggccaacgtggtgaaaccccgtctctactaaaa---atac
s panTro4.chr19                  59968932 184 +  63644993 cctgggcaacagagcgagaccccatctgt-ctcaaaacaaacaaacaaaac--aaaGTCAgccgggcgcagtggcccatgcctgtaatcccagcactttgggaggttgcggcaggtgaatcacctgaggtcaggagttccaga-------------------------------ccagcctggccaacgtggtgaaaccctgtctctactaaaa---atac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921218 186 +  60714840 CCTGGGCAACAGAGCAAGACTCCGTCTGT-CTCAAAACAAACAAACaaaacataaagtcagccgggcacagtggctcatgcctgtaatctcagcactttgggaagccgaggcaggtggatcacctgaggtcaggagttccaga-------------------------------ccagcctggccaacatggtgaaaccccgtctctactaaaa---atac
i ponAbe2.chr19                 M 668 C 0
s macFas5.chr19                  55832268 185 +  59248254 cctgggcaacacagcgagacttcatctgt-ctcaaaacaaacaaacaaaacataaaGTCAgcggggtgcagtggctcacgcctgtaatcccagcactttggaaggctgaggcagatggatcacctgaagtcaggagtttgaga-------------------------------ccagcgtggctaacgtggtgaaaccccgtctctactaaaa---ata-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47945080 175 +  51301725 cgtggctaacgtggtgaaaccccgtctctactaaaaataaa------------aaatttggccaggcgcagtggctcaagcctgtaatcccagcactttgggaggccgagacgggtggatgac--aaggtcaggagatagaga-------------------------------ccatcctggctaacccggtgaaaccccgtctctactaaaaaataca-
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     58448 195 +    138250 cctgaacaacgtggagaaaccccatctctactaaaaatacaa-----------gaaattagctaggtgtggtggcacataactgtagtcccagctactcggaaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatcatgccattgcactccagcctgggcaacagaacaagattccgtctc---------------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47644174 982 +  50890351 I
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=112592.000000
s hg38.chr19_GL949751v2_alt        974674 116 +   1002683 aaaaattagcagggtatggtagcaggcatct-taatcccagctactcaggaggctgaggtccg-----cgcttgaacccaggaggcagaggttacagtgagccgagatcgcgccattgcact
s panTro4.chr19                  59969116  89 +  63644993 aaaaattagcagggtatggtagcaggcatct-taatcccagctactcaggaggc--------------------------------agaggttacagtgagccgagattgcgccattgcact
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921404 116 +  60714840 aaaaattagcagggtatggtagcaggcatct-taatcccagttactcaggaggctcaggtccg-----tgcttgaacccaggaggcagaggttacagtgagccgagatggcgccgttgcact
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55832453 111 +  59248254 aaaaattagcagggtgtggtggcgggcacct-taatcccagctactcaggaggctgtg----------cgcttgaacccgggaggcagaggttccagtgagccgagatcgtgccgttgcact
i macFas5.chr19                 C 0 I 1
s papAnu2.chr19                  47945255 122 +  51301725 aaaaactagcccggcaaggtggcgggcgcctgtagtcccagctactcgggaggctgaggcagaagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcact
i papAnu2.chr19                 C 0 I 1
s chlSab2.chr6                   47645156 111 +  50890351 aaaaattagcagggtgtggtcacaggcacct-taatcccagctactcaggaggctgtg----------cgcttgaacccaggaggcagaggttccagtgagccaagatcgtgccgttgcact
i chlSab2.chr6                  I 982 I 1
s calJac3.chr22_GL285922_random     58643  92 +    138250 -aaaaaTAgctgggcgcggtggctcatgcctgtaatcctagcactttgggaggccgagg---------tgggtggatc-----agcagaggt--caggagttcaagacc-------------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e rheMac3.chr19                  60693952 2020 +  64156825 M

a score=420257.000000
s hg38.chr19_GL949751v2_alt        974790 197 +   1002683 cagcctggccgacagagtgagactccctctc-aaaat----------------aacagta-gtaataaat--------aaataaaGTCGTTgcttgcaggctgtac-aaaaaaaggcagcaactggacttggcccctaactcatagtttgccaaAACTCTGCTCTAAAGTTTGCTTGCTTCATTCACTTCTCAGAGCCTGGCCCTGGGAGCCGCCTATCCCAGT
s panTro4.chr19                  59969205 197 +  63644993 cagcatggctgacagagtgagactccctctc-aaaat----------------aatagta-gtaataaat--------aaataaaGtcgttgcttgcaggctgtac-aaaaaaaggcagcaactggacttggcccctaactcatagtttgccaaAACTCTGCTCTAAAGTTTGCTTGCTTCATTCACTTCTCAGAGCCTGGCCCTGGGAGCCGCCTATCCCAGT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921520 201 +  60714840 cagcctggccaacagagtgagactccctctc-aaaat----------------aataata-gtaataaat----taacaaataaagtcattgcttgcaggctgtac-aaaaaaaggcagcaactggatttggcccctaactcatagtttgccaaAACTCTGCTCTAAAGTTTGCTTGCTTCATTCACTTCTCAGAGCCTGGCCCTGGGAGCCGCCTATCCCAGT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60696027 205 +  64156825 cagcctggccgacagagtgagactctgtctc-aaaaa----------------aataata-ataataaaCAAATGAATAAAtaaagtcattgcttgcaggctgtac-aaaaaaaggcagcagctggatttggcccctagcccatggtttgccaaAACTCTGCTCTAAAGTTTGCTTGCTTCATTCACTCCTCAGAGCCTAGCCCTGGGAGCCGCCTCTCCCAGT
i rheMac3.chr19                 M 2020 C 0
s macFas5.chr19                  55832565 205 +  59248254 cagcctggccgacagagtgagactctgtctc-aaaaa----------------aataata-ataataaacaaatgaataaataaagtcattgcttgcaggctgtac-aaaaaaaggcagcagctggatttggcccctagcccatggtttgccaaAACTCTGCTCTAAAGTTTGCTTGCTTCATTCACTCCTCAGAGCCTAGCCCTGGGAGCCGCCTCTGCCAGT
i macFas5.chr19                 I 1 C 0
s papAnu2.chr19                  47945378 204 +  51301725 cagcctggccgacagagtgagactctgtctc--aaaa----------------aataata-ataataaataaatgaataaataaagtcattgcttgcaggctgtac-aaaaaaaggcagcagctgGATTTGGCCCCTAGCCCATGGTTTGCCAAAACTCTGCTCTGAAGTTTGCTTGCTCCATTCACTCCTCAGAGCCTGGCCCTGGGAGCCGCCTCTGCCAGT
i papAnu2.chr19                 I 1 C 0
s chlSab2.chr6                   47645268 221 +  50890351 cagcctggccgacagagcgagactctgcctc-aaaaaaataaataataataataataata-ataaaaaataaatgaataaAtaaagtcattgcttgcaggctgtac-aaaaaaaggcagcagctggatttggcccctagcccatggtttgccaaAACTCTGCTCTAAAGTTTGCTTGCTCCATTCACTCCTCAGAGCCTGGCCCTGGGAGCCGCCTCTCCCAGT
i chlSab2.chr6                  I 1 C 0
s calJac3.chr22_GL285922_random     58735 205 +    138250 -agcctggccatcatggtgaaaccccatctttaaaaa----------------aaaAATACATAATAAATAaa-aaatgaaaatagtcatagcttgcaggctgtacaaaaaaaaggcagccactggatttggcccctgggccacagttcaccaaAACTAAGCTCTAAAGCTTACTCGGTTCATTCACTCCTCAGAGCCTGCCCCCGGGAGCCGCCCAT-CCAGA
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20132918 2038 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M

a score=257111.000000
s hg38.chr19_GL949751v2_alt        974987 88 +   1002683 CCTCATCCCACATGGCCAGCGTT----CTCCTACCTTCAATGATCTTTGCTGCAAACTCTCGGATAGACTTGAGGGAAGCCAAGTCCAGGTG
s panTro4.chr19                  59969402 88 +  63644993 CCTCATCCCACATGGCCAGCGTT----CTCCTACCTTCAATGATCTTTGCTGCAAACTCTCGGATAGACTTGAGGGAAGCCAAGTCCAGGTG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921721 91 +  60714840 CCTCATCCCCCATGGCCAGCGTTCT-CCTCCTACCTTCAATGATCTTTGCTGCAAACTCTCGGATGGACTGGAGGGAAGCCAAGTCCAGGTG
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60696232 91 +  64156825 CCTCATCCCACACAGCCAGCGTTCT-CCTCCTACCTTCAATGATCTTCGCTGCAAACTCTCGGATGGACTTGAGGGAAGCCAAGTCCAGGTG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55832770 91 +  59248254 CCTCATCCCACACGGCCAGCGTTCT-CCTCCTACCTTCAATGATCTTCGCTGCAAACTCTCGGATGGACTTGAGGGAAGCCAAGTCCAGGTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47945582 92 +  51301725 CCTCATCCCACACGGCCAGCATTCTCCCTCCTACCTTCAATGATCTTCGCTGCAAACTCTCGGATGGACTTGAGGGAAGCCAAGTCCAGGTG
i papAnu2.chr19                 C 0 I 226
s chlSab2.chr6                   47645489 91 +  50890351 CCTCATCCTACACCGCCAGCGTTCT-CCTCCTACCTTCAATGATCTTCGCTGCAAACTCTCGGATGGACTTGAGGGAAGCCAAGTCCAGGTG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     58940 88 +    138250 CCTCATCGCACAAGGCCAATGTT----CTCCTACCTTCACTGATCTTCGCTGCAAACTCCCTGATGGACTTGAGGGAGGCCAGGTCCAGGTG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20134956 92 - 122678785 CCTCGCCCCACAAGGCCAGCATCCTCCCGCCTACCTTCAATGATCTTCGCTGCAAACTCTCGGATGGACTTGAGAGAGGCCAAGTCCAGGTG
i canFam3.chr1                  I 2038 C 0
e nomLeu3.chr10                 103390738 2381 - 106955855 M

a score=423390.000000
s hg38.chr19_GL949751v2_alt        975075 140 +   1002683 CCGGGCGTTGACATGGTGATTGAGGGTCTCCCCGCGGATGTCCTTTGCTGCCGCCTCACACTTCTCCATGTCTCGGCAGGCcaggatgatgttgcctcctgaaaacccaggatggaaaaagatttaaattaataatccac
s panTro4.chr19                  59969490 140 +  63644993 CCGGGCGTTGACATGGTGATTGAGGGTCTCCCCGCGGATGTCCTTTGCTGCCGCCTCACACTTCTCCATGTCTCGGCAGGCCAGGATGATGTTGCCtcctgaaaacccaggatggaaaaagatttaaattaataatccac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921812 140 +  60714840 CCGGGCGTTGACGTGGTGATTGAGGGTCTCCCCGCGGATGTCCTTTGCCGCCGCCTCACACTTCTCCATGTCTCGGCAGGCcaggatgatgttgcctcctgaaaacccaggatggaaaaagatttaaattaataatccac
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60696323 140 +  64156825 CCGGGCATTGACGTGGTGATTGAGAGTCTCCCCGCGGATGTCCTTTGCTGCCGCCTCACACTTCTCCATGTCTCGGCAGGCCAGGATGATGTTGCCTCCTGAAAACCCAGGATGGAAAAAGATTTAAATTAATAATCCAC
i rheMac3.chr19                 C 0 I 3813
s macFas5.chr19                  55832861 140 +  59248254 CCGGGCATTGACGTGGTGATTGAGAGTCTCCCCGCGGATGTCCTTTGCTGCCGCCTCACACTTCTCCATGTCTCGGCAGGCCAGGATGATGTTGCCTCCTGAAAACCCAGGATGGAAAAAGATTTAAATTAataatccac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47945900 140 +  51301725 CCGGGCGTTGACGTGGTGATTGAGAGTCTCCCCGCGGATGTCCTTTGCCGCCGCCTCACACTTCTCCATGTCTCGGCAGGCCAGGATGATGTTGCCTCCTGAAAACCCAGGATGGAAAAAGATTTAAATTAATAATCCac
i papAnu2.chr19                 I 226 C 0
s chlSab2.chr6                   47645580 140 +  50890351 CCGGGCATTGACGTGGTGATTGAGAGTCTCCCCGCGGATGTCCTTTGCTGCCGCCTCACACTTCTCCATGTCTCGGCAGGCCAGGATGATGTTGCCTCCTGAAAACCCAGGATGGAAAAAGATTTAAATTAataatccac
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     59028 140 +    138250 CCGGGCATTCACATGGTGATTGAGGGTCTCCCGGCGGATGGCTCTGGCCGCCGCCTCACACTTCTCCATGTCTCGGCAGGCCAGGATGACGTTGCCTCCTGAAAACCCGGGATAGAAAAAGGTTTATGTTAACAACccac
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20135048 139 - 122678785 CCAGGCACTGACACGGTGATTAAGGGTTTCCCCACGAATCTCCTTTGCCGCTGCCTCACACTTCTCCATATCTCGACAGGCCAGAATGATGTTGCCTCCTGGAAGCCCGGGATAGGAAAAAA-CTAATTTTTCAATCCTC
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103390738 2381 - 106955855 M

a score=6925.000000
s hg38.chr19_GL949751v2_alt        975215 6 +   1002683 tcctgg
s panTro4.chr19                  59969630 6 +  63644993 tcctgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921952 6 +  60714840 tcctgg
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55833001 6 +  59248254 gcctgg
i macFas5.chr19                 C 0 M 23308
s papAnu2.chr19                  47946040 6 +  51301725 gcctgg
i papAnu2.chr19                 C 0 I 2465
s chlSab2.chr6                   47645720 6 +  50890351 gcctgg
i chlSab2.chr6                  C 0 I 2646
s calJac3.chr22_GL285922_random     59168 6 +    138250 tcctag
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20135187 5 - 122678785 GCCCA-
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e rheMac3.chr19                  60696463 3813 +  64156825 I

a score=43160.000000
s hg38.chr19_GL949751v2_alt        975221 83 +   1002683 gtactgaccccagagac--atgaaaacat-------------acgtctacacaaaaacacatccaccaatgttcactgcggcattcttcacaaaagcc
s panTro4.chr19                  59969636 83 +  63644993 gtactgaccccagagac--atgaaaacat-------------acgtctacacaaaaacacatccaccaatgttcactgcggcattcttcacaaaagcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56921958 83 +  60714840 gtactgaccccagagaa--atgaaaacat-------------acgtctacacaaaaacacgtgcgccaacgttcactgcggcattcttcacaagagcc
i ponAbe2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     59174 95 +    138250 atactgaccctggagaa--atgaaaacatttttacacaaaacacgtctacacaaaagcacatgcaccaatgttcgc-atggcgttcttcacagaagcc
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20135192 85 - 122678785 GTACAGAGAACAAACACaaatgaaaacac-------------aggtctgctcaagagtgtgtacacacgagcccccagctgcgctgttcacggcagcc
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I
e macFas5.chr19                  55833007 23308 +  59248254 M
e rheMac3.chr19                  60696463 3813 +  64156825 I

a score=179698.000000
s hg38.chr19_GL949751v2_alt        975304 240 +   1002683 aaaaggtagaaa-caaccaaatgcccatctgtggatgaagggacaacaa-aatgtggtccatccatagagatggaatattagacggccgtgaaaaggagtgaagcactggctcatgctacagcaaggatgaccgtcagaaacactgtgctcggggaaagaaaccagacacgaaagaccacacagcgtacaatcccatttacatgaattctatgtatatgatttcacacctatgaaacgccca
s panTro4.chr19                  59969719 240 +  63644993 aaaaggtagaaa-caaccaaatgtccatctgtggatgaagggacaacaa-aatgtggtccatccatagagatggaatattagacggctgtgaaaaggagtgaagcactggctcatgctacagcaaggatgaccgtcagaaacactgtgctccgggaaagaaaccagacacgaaagaccacacagcgtagaatcccatttacatgaattctatgtatatgatttcacacctatgaaatgccca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56922041 240 +  60714840 aaaaggtagaaa-caaccaaatgtccatctgtggatgaagggacaacaa-aatgtggtccagccacagagatggaatattagacggccgtgaaaaggagtgaagcgctggctcacgctacagcaaggatgaccgtcagaaacactgtgctcggggaaagaaaccagacacgaaagaccacacagcgtacaatcccatttacatgaaTTCTATTTATATGATTTCACACCTATGAAATGCCCA
i ponAbe2.chr19                 C 0 I 393
s macFas5.chr19                  55856896 234 +  59248254 aaaaaaaaaaaa-caaccaaatgtctatccgtgaatgaagggctaacaa-aatgtggtccatccatagagatggaatatta----gccatgaaaaggagtgaagcactggctcacgctacagcaagaatgaccctcagaaacactgtgctcagggaaagaaaccagacacgaaagac--cacagtgtccagtcccatttacatgaatgctatgtgtatgatttcacacctatgaaatgccca
i macFas5.chr19                 M 23308 C 0
s calJac3.chr22_GL285922_random     59269 228 +    138250 agaaggtagaaa-----ccaatgtccatccgtgggtaaagagataacaa-ca--tggtccct-cagaggggcagaatattacacagctgtgaaaaggagtggagcactgactcaggctacagcaaggaagacc-tcagaaactc--tgctcaggaagagaaagcagacac--aaggccacgtagtggacaatcccatttacaggaattctgttcacacgatttcacgcatatgaaatgccca
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20135277 208 - 122678785 gaaatatggaaaccacccctgtgtccatcagctgctgagcagaaatgaacaaggtgttacatccagagc-ctggaatgctactcggccacggaatagaacaaaacactgacacatggtataacataggtggacctcataaa---tgtgctca-taaaatgtgccagtcacaaaaagatatgtggtg-----------------------------caggatttcgtgtttatgaaatacctg
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I
e rheMac3.chr19                  60696463 3813 +  64156825 I

a score=13443.000000
s hg38.chr19_GL949751v2_alt        975544 18 +   1002683 gaataggcaaatccatag
s panTro4.chr19                  59969959 18 +  63644993 gaataggcaaatccatag
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55857130 18 +  59248254 gaataggcaaatctatag
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     59497 18 +    138250 gaataagcaaatccacag
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20135485 18 - 122678785 gaacaggccgatccacag
i canFam3.chr1                  C 0 I 1359
e ponAbe2.chr19                  56922281 393 +  60714840 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I
e rheMac3.chr19                  60696463 3813 +  64156825 I

a score=155682.000000
s hg38.chr19_GL949751v2_alt        975562 399 +   1002683 agaaagaaaatagattcttggttttctagggcagggggtggggagagggaattacagcttgatagtt-acagtgagc-aggtttctttctagggtaacag--atgttctaagattgattttaaagatggttgcat-------cattctgtgactatactaaacatcactgaattggtcgggcacggtggctcacacctgtaattccagcactttgggaggccaaggcaagaggatTCCCCATCCTCTCCtttttttttttttttt---agatggag--tctcactctgtcacccaggctggagtgcggtggcgcaatctcggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacct---accacaactagctaa
s panTro4.chr19                  59969977 405 +  63644993 agaaagaaaatagattcttggttttctagggcagggggtggggagagggaattacagcttgatagtt-aaagtgagc-aggtttctttctagggtaaccg--atgttctaagattgattttaaagatggttgcat-------cactctgtgactatactaaacatcactgaattggtcgggcacggtggctcacacctgtaattccagcaatttgggaggccaaggcaagaggatTCCCCATCCTCTCCtttttttttttttttttttagatggag--tctcactctgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaacctccacctcctgggttgaagcaattctcctgcctcaacctcccgagtagctgggattacaggcgcctgccaccacaactagctaa
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55857148 399 +  59248254 agaaagaaaatagattattggttttctagggc----tgcaggcagagggaattacagcttgatagttaaaagtgagcaaggtttctttctagggtaacagaaatgttctaagattgactttaaagatggttgcatcactctgcactctgtgactatactaaacaccatggaattCATcaggcacggtggctcacacctggaatcccagcacttggggag-----gGCATTAGGACt-----ttttttccttttttttttttttgt---agttggag--tctcactctgtcaccgaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcctgccaccacacctagctaa
i macFas5.chr19                 C 0 I 14
s calJac3.chr22_GL285922_random     59515 374 +    138250 agaaagaaaatagattattggtttcccagggc----tgtggggagaaggaattgcagcttggtagtt-aaa---agcaacgtt-----------taacaa--atgttctagggttgatttgaaagacggctgcat-------cgc----tgactacactaaacatcaccgaactggccggacacggtggctcacacctgtcatcccagcactttgggaggctgaggcaagaggatt-----gtttttccttttttttcttg-------agacggggtctctctctctgctgtccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacctccagggttcaagtgattctcctgccttagcatcctaagtagctggggttacaggtgcccaccacctcacccagctaa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I
e ponAbe2.chr19                  56922281 393 +  60714840 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I
e rheMac3.chr19                  60696463 3813 +  64156825 I

a score=353034.000000
s hg38.chr19_GL949751v2_alt        975961 528 +   1002683 ttttttatttttttattttt--------agtagagacagcggtttcaccatgttagccaagctagtcttgaacttctgacctcaggtgatccaccccgcggcctcccaaagtactgggattacaaataagccacaatgcccagccTCCAAtttttt-ttgttgtggtaaaatacaaatcacttaaaatttatcatcttaacccccttttctttttgtttattattattttt---ttttttttgagtc--agtctcactctgctgccgcggctggagtgc--tggcgccatcacagctca-ttcagccttgaactcctaggctcaagtgacctgggactataggtaccacctgtgccagcatgcctggctaactctgg-------------tagagatgggggtgttgctatggtgtccaggctggtctggaacccctggcctcaagtgatcctcctgcctcagcctccaaaagtgctggaattatagatgtgagccaccgagacccgccctcttagccatttttaagtgtccagttcattggtattaaaaacatttat
s panTro4.chr19                  59970382 539 +  63644993 ttttttttttttttttttttttttttttagtagagacaggggtttcaccatgttagccaagctagtcttgaacttctgacctcaggtgatccaccccacggcctcccaaagtactggggttacaaataagccacaatgcccagccTCCAAtttttt-ttgttgtggtaaaatacaaatcacttaaaatttatcatcttaaccccctttTCTTTTTGTTTATTAttattattattttttttttgagtc--agtctcactctgctgccgcggctggagtgc--tggcgccatcatagctca-ttcagccttgaagtcctaggctcaagtgacctgggactataggtaccacctgtgccagcatgcctggctaactctgg-------------tagagatgggggtgttgctgtggtgtccaggctggtctggaacccctggcctcaagtgatcctcctgcctcagcctccaaaagtgctggaattatagacgtgagccaccgagaccagccctcttagccatttttaagtgtccagttcattggtattaaaaacatttat
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60700276 515 +  64156825 tttttttttttttttttttt--------agtagagacaagggtttcaccatgttagccaagctagtcttaaacttctgacctcaggtgatccactccgcagcttcccaaagtactgggattacaaataagccacaatgcctggccTCCAA-ttttt-ttgttgtggtaaaatacaaatcacttaaaattaaccatcttaaccTCCCCCCCGCtttttt--------ttttt---ttttttttaagtcagagtctcattctgctgccctggctgg-gtgc--tggcaccatcatagctcacctcagccttgaagtcctgggctcaagtgacctgggactacaggcaccacctgtgccagcatgcctggctaattttgg-------------tagagatgtgggtcttgctacagtgtccaggctggtctggaaaccctggcctcaagtgatcctcctgccttagcctccaaaagtgctggaattatagatgtga---accaAGACCAGccctcttaaccatttttaagcgtccagttcattggtattaaaaacatt---
i rheMac3.chr19                 I 3813 C 0
s macFas5.chr19                  55857561 515 +  59248254 tttttttttttttttttttt--------agtagagacaagggtttcaccatgttagccaagctagtcttgaacttctgacctcaggtgatccactccgcagcttcccaaagtactaggattacaaataagccacaatgcctggccTCCAA-ttttt-ttgttgtggtaaaatacaaatcacttaaaattaaccatcttaaccTCCCCCCCGCtttttt--------ttttt---ttttttttaagtcagagtctcattctgctgccctggctgg-gtgc--tggcaccatcattgctcacctcagccttgaagtcctgggctcaagtgacctgggactacaggcaccacctgtgccagcatgcctggctaattttgg-------------tagagatgtgggtcttgctacagtgtccaggctggtctggaaaccctggcctcaagtgatcctcctgccttagcctccaaaagtgctggaattatagatgtga---accaAGACCAGccctcttaaccatttttaagcgtccagttcattggtattaaaaacatt---
i macFas5.chr19                 I 14 C 0
s calJac3.chr22_GL285922_random     59889 494 +    138250 ----ttttttttgcatttta--------agtagagacaggggtttcaccatgttagcccagctagtctcaaactcctgacctcaggtgatcggctcctcagcctcccaaaccgcttgggttacaAATACCCGACAGCACCTAGCCTCCATTtttttgttgttgttgtaaaattacaatcacttaaaatttactgtttcaacacccccc------------------ttttc---tttcttgggagtcaaagtcaca--ctgctgctcaggttggaatgcagtggtgccatcctagctca-ttcagccttgaagtcctgggctcaagtgacctgggactacaggcacca--------------tctggctaatttgggggtggggggcgcagagagatg-gggtcttcctatgttgtccaggctggtctggaactcctggcctaaagtgattctcctgcatcagcctccaaaagtgctggaattatagatgtga-------------gccaccttacccatttttatgtatccagttcattggtactgaaaacatgcat
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I
e ponAbe2.chr19                  56922281 393 +  60714840 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I

a score=95601.000000
s hg38.chr19_GL949751v2_alt        976489 89 +   1002683 ggctgggccgggcatggtggctcacacctgtaatcccagcactttgggagaccaaggcaggtggatcacctgaggtcaggagttcaaga
s panTro4.chr19                  59970921 89 +  63644993 ggctgggccgggcacggtggctcacacctgtaatcccggcacttcgggagaccaaggcaggtggatcacctgaggtcaggagttcaaga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56922674 89 +  60714840 GGCTGggccgggcacggtggctcacacctgtaatcccagcactttgggagaccaaggcaggtggatcacctgaggtcaagagttcaaga
i ponAbe2.chr19                 I 393 C 0
s rheMac3.chr19                  60700791 77 +  64156825 ------------catggtagctcacacctgtaatcccagcattttgggaggccgaggcgggtggatcacttgaggtcaggagttcaaga
i rheMac3.chr19                 C 0 I 35
s macFas5.chr19                  55858076 77 +  59248254 ------------catggtagctcacacctgtaatcccagcattttgggaggccgaggcgggtggatcacttgaggtcaggagttcaaga
i macFas5.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     60383 83 +    138250 -----ggccgggcgtggtggctca-gcctgtcatcccagcactttcggaggccaaggcgggtggatcacctgaggtcgggagtttgaga
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I

a score=10431.000000
s hg38.chr19_GL949751v2_alt        976578 16 +   1002683 ccagcctggccaacac
s panTro4.chr19                  59971010 16 +  63644993 ccagcctggccaacac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56922763 16 +  60714840 ccagcctggccaacac
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55858153 12 +  59248254 ----cgaggccaacat
i macFas5.chr19                 C 0 I 23
s calJac3.chr22_GL285922_random     60466 16 +    138250 ccagcctgaccaacat
i calJac3.chr22_GL285922_random C 0 I 23
e canFam3.chr1                   20135503 1359 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I
e rheMac3.chr19                  60700868 35 +  64156825 I

a score=480604.000000
s hg38.chr19_GL949751v2_alt        976594 443 +   1002683 attacaaacttagctgggtgtggtgttgcatgcctgtaatcccagctactcgggtggctgaggcaggagaattgcttgaacccgggaggcgaaggttgcagtgagccaagatcatgccactgcactccagcctgggcgacaagagcaaaactccatctcaaaaaaaaaaaaacaataataataattcctaatgttgtgcaaccattacaaccatccatctctcaaattgtttcatcttgccaaactaaacttccgtttccattaaacag-taactccccattctcccctcccctcctgacccctggcaag-caccattccaact----tctctatgaatttaactgtaggtagctcctgtaagtggaatcataccgtatttgctcttctgtcgactggcttatttcacttcatggaatgtcctcaaggttcatctgtttcaatgccctt
s panTro4.chr19                  59971026 441 +  63644993 attacaaacttagctgggtgtggtgttgcacgcctgtaatcccagctactcgggtggctgaggcaggagaatcgcttgaacctgggaggcgaaggttgcagtgagccaagatcatgccactgcactccagcctgggcgacaagagcaaaactccatctcaaaaaaaaaaaa-caataataataattcctaatgttgtgcaaccattacaaccatccatctctcaaattgtttcatcttgccaaactaaacttc-gtttccattaaacag-taactccccattctcccctcccctcctgacccctggcaag-caccattcaaact----tctctatgaacttaactgtaggtagctcctgtaagtggaatcataccgtatttgctcttctgtcaactggcttatttcacttcatggaatgtcctcaaggttcatctgtttcaatgccctt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56922779 441 +  60714840 aatacaaacttagctgggtgtggtgctgcatgcctgtaatcccagctacttgggtggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcgacaagagcaaaactccatctcaaaaagaaaaa--CAGTAATAATAATTCCTAA---tgtgcaaccatgacaaccatccatctctcaaattgtttcatcttcccaaactaaacttctgtttccattaaacaa-taactcctcattct-ccctccactcccgacccctggcaag-caccattcaaacttctctctctatgaatttaactctaggtggctcctgtaagtggaatcatacagtatttgctcttctgtcgaccggcttatttcacttcgtggaatgtcctcaaggttcatctgtttcaatgccctt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60700903 440 +  64156825 aatacaaaattagctgtttgtgttgccacatgcctgtagtcccagccacttgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagctgaggtcatgccactgcactccagcctgggcgacaagagcaaaactccctctcaaaaagaaa----cagtaataataatttctaatgttgtgcaaccatcacaaccacctgtttctcaaactgtttcatcttcccaaactaaacttctgtgcccattaaataattaactccccattctctcctcccctcccaacccctggcaagccattattcaaact----tctctatgaatttaactctaggtagctcctataagtggaatcatacagtatttgctcttctgtcgactgactgatttcacttcatagaatgtcctcaaggttcatc-gtttcaatgacctt
i rheMac3.chr19                 I 35 C 0
s macFas5.chr19                  55858188 440 +  59248254 aatacaaaattagctggttgtggtgccacatgcctgtagtcccagccacttgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagctgaggtcatgccactgcactccagcctgggcgacaagagcaaaactccctctcaaaaagaaa----cagtaataataatttctaatgttgtgcaaccatcacaaccacctgtttctcaaactgtttcgtcttcccaaactaaacttctgtgcccattaaataattaactccccattctctcctcccctcccaacccctggcaagccattattcaaact----tctctatgaatttaactctaggtagctcctataagtggaatcatacagtatttgctcttctgtcgactgactgatttcacttcatagaatgtcctcaaggttcatc-gtttcaatgacctt
i macFas5.chr19                 I 23 C 0
s calJac3.chr22_GL285922_random     60505 417 +    138250 aatacaaaattagctgggtgtggtggtgcatgcctgtaatcccagctacttgggaagctgaggcaggagaattgcttgaacctgagaggcagaggttgcagcaagctgagatggtgccactgtaccccagcctgggcaacaagagcaaaaatccatctcaaacaaaaa----aagtcataa-------------tgtacaaccaacacgactacccgtctctagaacgttttcatcttcccaaactaaaattctgtgtctattaaacaa-taactccccattctcccctcccc-----acccctggcaag-cac----caaact----cctctatgaatttaactctaggtagctcatataagtggaatcacacagtatttgttcttctgtggaatggcttatttcacttagtgtcatgtcctcaaggtccatccatTAGAATGCCCCT
i calJac3.chr22_GL285922_random I 23 I 462
e canFam3.chr1                   20135503 1359 - 122678785 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I

a score=10493.000000
s hg38.chr19_GL949751v2_alt        977037 13 +   1002683 -ttttttgttttgc
s panTro4.chr19                  59971467 13 +  63644993 -ttttttgttttgc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56923220 13 +  60714840 -ttttttgttttgc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60701343 14 +  64156825 actttttgttttgt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55858628 14 +  59248254 acTttttgttttgt
i macFas5.chr19                 C 0 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I
e calJac3.chr22_GL285922_random     60922 462 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I
e papAnu2.chr19                  47946046 2465 +  51301725 I

a score=13589.000000
s hg38.chr19_GL949751v2_alt        977050 19 +   1002683 tttgttt-tgttttgttttT
s panTro4.chr19                  59971480 19 +  63644993 tttgttt-tgttttgttttT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56923233 12 +  60714840 tttgttt--------ttttt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60701357 19 +  64156825 tttgttt-tgctttgttttg
i rheMac3.chr19                 C 0 I 6
s macFas5.chr19                  55858642 19 +  59248254 tttgttt-tgctttgttttg
i macFas5.chr19                 C 0 I 6
s papAnu2.chr19                  47948511 20 +  51301725 ttcgtttctttttttttttt
i papAnu2.chr19                 I 2465 I 6
e canFam3.chr1                   20135503 1359 - 122678785 I
e calJac3.chr22_GL285922_random     60922 462 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M
e chlSab2.chr6                   47645726 2646 +  50890351 I

a score=306716.000000
s hg38.chr19_GL949751v2_alt        977069 200 +   1002683 gagtctcactctgtcacccaggctggagtgccgtggcgccatctctgctcactgcaacccctgcctctcaggttcaagcgattctcctgcttc-agcctcccaagcagc-tgggactacaggtgcccaccacaactcctggctaa-tttttgta-tttttagtagagagggggtttcaccatgttggttaggctggtctcgaac
s panTro4.chr19                  59971499 200 +  63644993 gagtctcgctctgtaacccaggctggagtgcagtggcaccatctctgctcactgcaacccctacctctcaggttcaagcgattctcctgcttc-agcctcccaagtagc-tgggactacaggtgcccaccacaactcctggctaa-tttttgta-tttttagtagagagggggtttcaccatgttggttaggctggtcttgaac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56923245 200 +  60714840 gagtctcgctctgtcacccaggctggagtgcagtggcgccatttctgctcactgcaacctctgcctctcaggttcaagcaattctcctgcttc-agcctcccaagtagc-tgggactacaggtgcccgccacaactcctggctaa-tttttgta-tttttagtagagacggggtttcaccatgttggttaggctggtctcaaac
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60701382 201 +  64156825 gagtcccgctctgttgcccaggctggagtgcagtggtgcgatctcggttcaccgcaacctctgcctcccgggttcaagcgattctcctgcctc-agtctctcgggtagcttgggattacaggcacccactacaatgcctggctaa-tttttgta-tttttagtagagatggggtttcaccacgttggttaggctggtctcgaac
i rheMac3.chr19                 I 6 C 0
s macFas5.chr19                  55858667 201 +  59248254 gagtcccgctctgttgcccaggctggagtgcagtggtgcgatctcggttcaccgcaacctctgcctcccgggttcaagcgattctcctgcctc-agtctctcgggtagcttgggattacaggcacccactacaatgcctggctaa-tttttgta-tttttagtagagatggggtttcaccacgttggttaggctggtctcgaac
i macFas5.chr19                 I 6 C 0
s papAnu2.chr19                  47948537 202 +  51301725 gagtctcgctctgttgcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctcccgcctc-agcctcccgagtagc-tgggactgcaggcgcccgccaccgcgcccggctagttttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatc
i papAnu2.chr19                 I 6 C 0
s chlSab2.chr6                   47648372 203 +  50890351 gagtttcgctctgtcgcccaagctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcgagactcccgagtagc-tgggactacaggcgcccgccacctcgcccggctagatttttgtattttttagtagagacggggtttcaccgggttagccaggatggtcttgatc
i chlSab2.chr6                  I 2646 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I
e calJac3.chr22_GL285922_random     60922 462 +    138250 I
e nomLeu3.chr10                 103390738 2381 - 106955855 M

a score=154649.000000
s hg38.chr19_GL949751v2_alt        977269 72 +   1002683 tcctgacctcgtgatccgccagctttggcctcccaaagtactga--ttacaggcgtgcaccaccgcgcccggcc
s panTro4.chr19                  59971699 74 +  63644993 tcctgacctcgtgatccgccagcttcggcctcccaaagtgctgagattacaggcgtgtgccaccgcacccggcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56923445 74 +  60714840 tcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgagattacaggtgtgcgccaccacgcccggcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393119 74 - 106955855 tcctgaccttgtgagccgccagcctcggcctcccaaagtgctgagattacaggcatgtgccaccgcgcccagcc
i nomLeu3.chr10                 M 2381 C 0
s rheMac3.chr19                  60701583 74 +  64156825 tcctgacctggtgatccatccgccttagcctcccaaagtgctgggattacaggcttgagccactgcgcccggcc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55858868 74 +  59248254 tcctgacctggtgatccatccgccttagcctcccaaagtgctgggattacaggcttgagccactgcgcccggcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47948739 74 +  51301725 tcctgacctcaggatctgcccgtctcggcctcccgaagtgctgggattacaggtgtgagccactgcgcctggcc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47648575 74 +  50890351 tcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacagacttgagccaccgcgcccggcc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I
e calJac3.chr22_GL285922_random     60922 462 +    138250 I

a score=404154.000000
s hg38.chr19_GL949751v2_alt        977341 157 +   1002683 agaatgcccttcctttttaaggctgaatcatatgcccctgtctatagaagccacattctgtttccctgttcatctgtggatgggtgcctgggttccttccacctccggactgtgaataatgctgcagtgagcatggatgtacagatatctctctgag
s panTro4.chr19                  59971773 155 +  63644993 agaatgcccttcctttttaaggctgaatcatatgccc--gtctatagaagccacattctgtttccctgttcatctgtggatgggtgcctgggttccttccacctctggactgtgaataatgctgcagtgagcatggatgtacagatatctctctgag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56923519 157 +  60714840 agaatgcccttcctttttaaggctgaatcatatgcccctgtctatagaggccacattctgtttccctgttcatctgtggatgggtgcctgggctccttccacctctggactgtgaataatgctgtaatgagcatggatgtgcaggtatctctctgag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393193 157 - 106955855 agaatgcccttcctttttaaggctgaatcatatgcccctgtctatagaggccacattctgtttccctgttcatctgtggatgagtgcctgggttccttccacttctggacagtgaataatgctgcaatgagcatggatgtgcagatatctctctgag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60701657 155 +  64156825 --aatgcccttcgtttttaaggctgaatcatataccactgtctacagaggccacattctgtttctctgttcatctgtggatgggtgcctggcttccttccaccttcggactgtgaataacgctgcagtgagcatggatgtgcagatatctctctgag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55858942 155 +  59248254 --aatgcccttcgtttttaaggctgaatcatataccactgtctacagaggccacattctgtttctctgttcatctgtggatggatgcctggcttccttccacctttggactgtaaataacgctgcagtgagcatggatgtgcagatatctctctgag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47948813 138 +  51301725 --aatgcCCTTcgtttttaaggctgaatcatatACCACTGTCTACAGAGGCCACACTCTGTTTCTCTGTTCATCTGTGGATGGGTGCCTGGCT-----------------TGTGAATAACGCTGCAGTGAGCATGGATGTGCAAATCTCTCTCTGAG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47648649 152 +  50890351 -----gcccttcgtttttaaggctgaatcgtataccactgtctacagaggccacgttctgtttctctgttcatctgtggatgggtgcctggcttccttccaccttcggactgtgaataatgctgcagtgagcgtggatgtgcagatctctctctgag
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     61384 139 +    138250 agaaTGCccttccttttgcaggctgaatcatgttccactgtctgcagactccacg-tgtgcttctctgttcatctgt-gatgggtgcctgggttgct---------ggaccgtgaatcatgct-------gcatgggtgtgcaaatatctctccgcg
i calJac3.chr22_GL285922_random I 462 C 0
e canFam3.chr1                   20135503 1359 - 122678785 I

a score=1100946.000000
s hg38.chr19_GL949751v2_alt        977498 348 +   1002683 AGCCAAAGCAGGGGAGATTTTACCTCTCCTGGCCAGTTCCAAGGCGGTCTGCTTCCCGATGCCTGTGTTGGCACCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGGCAAGCCCCACCGGTGACATAGTCCCTGAGGGTGAGAAGCGGCACGGTCAGTCCTGTGGGCCCACTCTCACCCCACGTGCCCCTGACTGAATGATCTCAGGCAA---CCTTGTCTGAGCTCACTCACATACCCCAACTGAAACAC--AGACATCATCACATCACACCAAGGGACCTC-TGTCATGTTCTCCAT--------------------------------AAGTGGCT------------CCACCCAGTGT----------CTGGCGTGTGGAACGCCTTCAGCAA
s panTro4.chr19                  59971928 348 +  63644993 AGCCAAAGCAGGGGAGATCTTACCTCTCCTGGCCAGTTCCAAGGCGGTCTGCTTCCCGATGCCTGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGGCAAGCCCCACCGGTGACATAGTCCCTGAGGGTGAGAAGCGGCACGGTCAGTCCTGTGGGCCCACTCTCACCCCACGTGCCCCTGACTGAATGATCTCAGGCAA---CCCTGTCTAAGCTCACTCACATACCCCAACTGAAACAC--AGACATCATCACATCACACCACGGGATCTC-TGTCATGTTCTCCAT--------------------------------AAATGGCT------------CCACCCCGTGT----------CTGGTGTGTGGAACGCCTTCAGCAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56923676 348 +  60714840 AGCCAAAGCAGGGGAGATTTTACCTCTCCTGGCCAGTTCCAAGGCCGTCTGCTTCCCGATGCCTGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGGCAAGCCCCACCGGTGACATAGTCCCTGAGGGTGAGAAGCGGCACGGTCAGTCCTGTCTGCCCACTCTCACCCCACGTGCCCCTGACTGAATGATCTCAGGCAA---ACCTGTCTGAGCTCACTCACATACCCCAACTGAAACAC--AGACATCATGACATCACACCACGGGATCTC-TGTCATGTTCTCCAT--------------------------------AAATGGCT------------CCACCCAGTGT----------CTGGTGTGTGGAACGCCTTCAGCAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393350 345 - 106955855 agccAAAGCAGGGGAGATTTTACCTCTCCTGGCCAGTTCCAAGGCGGTCTGCTTCCCAATGCCTGTGTTGGCGCCCGTCACAATGACCGTCTTCCCAGAGATGGTGGCCTTGCTGGGGCAAGCCCCACCGGTGACATAGTCCCTGAGGGTGAGAAGCGGCACGGTCAGTCCTGTCTGCCCA--CTCACTCCACGTGCCCCTGACTGAATGATCTCAGGCAA---ACCTGTCTGAGCTCACTCACGTACCCCAACTGAAACAC--AGACAACATCACATCACACCATGGGATCTC-TGTCACGTTCTCCAC--------------------------------AAATGGCT------------CCACCCA-TGT----------ATGGTGTGTGGAACGCCTTCAGCAA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60701812 348 +  64156825 AGCCAAAGCAGGGGAGATTTTACCTCTCTTGGCCAATTCCAAGGCGGTCTGCTTCCCGATGCCTGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGACAAGCCCCACCGGTGACATAGTCCCTGAGGGTGAGCAGCGGCATGGTCAGTCCTGTCTGCCAACTCTCACTCCACGTGCCCCTGACTGAGTGATCTCAGGCAA---AGCCGTCTGAGCTCACTCACATCCCCCAACTGAAACAC--AGACGTCATCACATCACACCACGGGATCTC-CGTCCTGTTCTCCAT--------------------------------AAATGACT------------CCACCCAGTGT----------CTGGTGTGTGGAACGCCTTCCGCAA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55859097 348 +  59248254 AGCCAAAGCAGGGGAGATTTTACCTCTCTTGGCCAATTCCAAGGCGGTCTGCTTCCCGATGCCTGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGACAAGCCCCACCGGTGACATAGTCCCTGAGGGTGAGCAGCAGCATGGTCAGTCCTATCTGCCAACTCTCACTCCACATGCCCCTGACTGAGTGATCTCAGGCAA---AGCCGTCTGAGCTCACTCACATCCCCCAACTGAAACAT--AGACGTCATCACATCACACCACGGGATCTC-CGTCCTGTTCTCCAT--------------------------------AAATGACT------------CCACCCAGTGT----------CTGGTGTGTGGAACGCCTTCCGCAA
i macFas5.chr19                 C 0 I 302
s papAnu2.chr19                  47948951 347 +  51301725 AGCCAAAGCAGGGGAGATTTTACCTCTCTTGGCCAATTCCAAGGCGGTCTGCTTCCCGATGCCTGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGACAAGCCCCACCAGTGACATAGTCCCTGACGGTGAGAAGCGGCATGGTCAGTCCTGTCTGCCAACTCTCACTCCACGTGCCGCTGACTGAGTGATCTCAGGCAA---AGCCGTCTGAGCTCACTCACGTCCCCCAACTGAAACAC--GGACATCATCACATCACACCACAGGATCTC-CGCCCTGTTCTCCAT---------------------------------GATGACT------------CCACCCAGTGT----------CTGGTGTGTGGAACGCCTTCCGCAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47648801 348 +  50890351 AGCCAAAGCAGGGGAGATTTTACCTCTCTTGGCCAATTCCAAGGCGGTCTGCTTCCCGATGCCTGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGACACGCCCCACCGGTGACATAGTCCCTGAGGGTGAGAAGCGGCATGGTCAGTCCTGTCTGCCAACTCTCACTCCACGTGCCCCTGACTGAGTGACCTCAGGCAA---ACCCGTCTGAGCTCACTCACATCCCCCAACTGAAACAC--AGACATCATCACATCACACCACGGGATCTC-TGTCCTGTTCTCCAT--------------------------------AAATGACT------------CCACCCAGTGT----------CTGGTGTGTGGACCGCCTTCAGCAA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     61523 399 +    138250 agccAAAGCAGGGGAGAGTTTACCTCTTTTCGCCAGTTCAAAGGCGGTCTGCTTCCCTATGCCCGTGTTGGCGCCCGTCACGATGACCGTCTTCCCAGGGATGGTGGCCTTGCTGGGGCAAACCCCACCGGCAACATTGTCCCTGAGCGCGGGAAGGGGCACAGTCAGTCCTGTCTGCCCACTCTCACCCCACGTGCCCCTGACTGAGTGATCTCTGACAA---ACCCGTATGAGCTCACTCCCGCCCCCCAACTGAAAAAC--AGATGTCATCACATCACACAGTGGGATCTC-TGTCCTGttctccacgttggtcaggctggtctcgaactcttgacctcaggtgatctgtccgccttggcctcccaaagtgctgggatcacaggtgtgagccactgcacccg---
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20136862 338 - 122678785 AGCCTCAGCAGAAAAAG---CACCTCTTCTGGCCAGCTCCAAGGCCGTCTGCTTCCCAATGCCTGTATTGGCGCCAGTCACAATGACGGTCTTCCCAGGAATGGTGGCCTTGCTGGGACAGGCCCCGCCCGCAATGTAGTCTCTGAAGATAAGAAACA--ATCATCAGTTCTGTCTGC--ACCCCCACCACACATGCCCCTG--TTAAtgatcttgagcaaatgaccccactgagcttgtgt---tcccccaaaggacagatgagaaggacatctcataactccgtgggggccagtgtgatggtacaggc--------------------------------aaa-ggct------------cagcaca--gc----------cctgTGCGAGGAGGTGCCACAACA-
i canFam3.chr1                  I 1359 C 0

a score=27717.000000
s hg38.chr19_GL949751v2_alt        977846 9 +   1002683 GTGACAGTC
s panTro4.chr19                  59972276 9 +  63644993 GTGACAGTC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924024 9 +  60714840 GTGACAGTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393695 9 - 106955855 GTGACACTC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60702160 9 +  64156825 GTGACAGtc
i rheMac3.chr19                 C 0 I 304
s macFas5.chr19                  55859747 9 +  59248254 gTGACAGTC
i macFas5.chr19                 I 302 I 1
s papAnu2.chr19                  47949298 9 +  51301725 gtgacagcc
i papAnu2.chr19                 C 0 I 1
s chlSab2.chr6                   47649149 9 +  50890351 GTCACAGtc
i chlSab2.chr6                  C 0 I 313
s calJac3.chr22_GL285922_random     61922 9 +    138250 gTGACCATC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20137200 8 - 122678785 -TGACAATC
i canFam3.chr1                  C 0 C 0

a score=443.000000
s hg38.chr19_GL949751v2_alt        977855 1 +   1002683 A
s panTro4.chr19                  59972285 1 +  63644993 G
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924033 1 +  60714840 G
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393704 1 - 106955855 G
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     61931 1 +    138250 G
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20137208 1 - 122678785 A
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47649158 313 +  50890351 I
e papAnu2.chr19                  47949307 1 +  51301725 I
e macFas5.chr19                  55859756 1 +  59248254 I
e rheMac3.chr19                  60702169 304 +  64156825 I

a score=25641.000000
s hg38.chr19_GL949751v2_alt        977856 7 +   1002683 TTATTTT
s panTro4.chr19                  59972286 7 +  63644993 TTATTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924034 7 +  60714840 TTATTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393705 7 - 106955855 TTATTTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60702473 7 +  64156825 TTATTTT
i rheMac3.chr19                 I 304 C 0
s macFas5.chr19                  55859757 7 +  59248254 TTATTTT
i macFas5.chr19                 I 1 C 0
s papAnu2.chr19                  47949308 7 +  51301725 ttttttt
i papAnu2.chr19                 I 1 I 2054
s chlSab2.chr6                   47649471 7 +  50890351 TTATTTT
i chlSab2.chr6                  I 313 C 0
s calJac3.chr22_GL285922_random     61932 7 +    138250 TTATTTT
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20137209 7 - 122678785 TTACTTT
i canFam3.chr1                  C 0 C 0

a score=65777.000000
s hg38.chr19_GL949751v2_alt        977863 25 +   1002683 ATAAATGCTCACTGCATGAGATTCC
s panTro4.chr19                  59972293 25 +  63644993 ATAAATGCTCACTGCATGAGATTCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924041 25 +  60714840 ATAAATGCTCCCTGCATGAGATTCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393712 25 - 106955855 CTAAATGCTCACTGCATGAGATTCC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60702480 25 +  64156825 ATAAATGCCCACTGCATGAGATTCC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55859764 25 +  59248254 ATAAATGCCCACTGCATGAGATTCC
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47649478 25 +  50890351 ATAAATGCCCACTGCATGAGATTTC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     61939 25 +    138250 ATAAACACCTACTGCATGAGATTCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20137216 25 - 122678785 GTAAAGACCCACtgtattggtctcc
i canFam3.chr1                  C 0 I 1695
e papAnu2.chr19                  47949315 2054 +  51301725 I

a score=102493.000000
s hg38.chr19_GL949751v2_alt        977888 52 +   1002683 Cggccaggtgagggggcttgcacctgtaatcccagcactttgggaggccaaa
s panTro4.chr19                  59972318 52 +  63644993 Cggccaggtgaggtggctcgcgcctgtaatcccagcactttgggaggccaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924066 52 +  60714840 Cggccaggcgaggtggctcgcgcctgtaatcccagcactttgggaggccaaa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393737 52 - 106955855 Cggccaggcgaggtggctcgcgcctgtaatcccagcactttgggaggccgaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60702505 52 +  64156825 CAgctgggcgaggtggctcgcacctgtaatcccagcactttgggaggccaaA
i rheMac3.chr19                 C 0 I 3619
s macFas5.chr19                  55859789 52 +  59248254 CAgctgggcgaggtggctcgcacctgtaatcccagcactttgggaggccaaa
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47649503 52 +  50890351 CAgctgggcgaggtggctcgcacctgtaatcccagcactttgggaggccaac
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     61964 32 +    138250 CAGCCCGGCAA--------------gtaatcccagcactttgggag------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e papAnu2.chr19                  47949315 2054 +  51301725 I

a score=135687.000000
s hg38.chr19_GL949751v2_alt        977940 105 +   1002683 gttttgggggtgggggggggcgggggcggatcacttgaggtcaggagttcgagtccagcctggcaaacatggcgaga-ccccgtctctact-taaaatacaaaaaTT
s panTro4.chr19                  59972370 105 +  63644993 gtttggggggggggggggggcgggggtggatcacttgaggtgaggagttcgagtccagcctggcaaacatggtgaga-ccctgtctctact-aaaaatacaaaaaTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924118  96 +  60714840 gtat---------ggggtggtgggggcagatcacttgaggtcaggagttcgagtccagcctggcaaacatggcaaga-ccctgtctctact-aaaaatacaaaaatt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393789  97 - 106955855 gttt---------cagggggcgggggcagatcacttgaggtcaggagttcaagtccagcctggcaaacatggcgagacccccgtctctact-aaaaatacaaaaaTT
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55859841  95 +  59248254 -----------gtcgggggtggggggcaggtcacttgaggtcaggagttcgagtccagcctggcaaacgtggggagacccctgtctctact-aaaaatacaaaaatt
i macFas5.chr19                 C 0 I 308
s chlSab2.chr6                   47649555  96 +  50890351 -----------gtcgggggcggggggcaggtcacttgaggtcaggagttccagtccagcctggtaaacatggggagacccctgtctctactaaaaaatacaaaaatt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     61996  90 +    138250 ------------tcagaggc---aggcagatcacttgaggtcaggagttcaagaccagcctggcaaacatggtgaga-cgcagtctctact-aaaaatacaaaaatt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=8120.000000
s hg38.chr19_GL949751v2_alt        978045 6 +   1002683 AGCCAG
s panTro4.chr19                  59972475 6 +  63644993 AGCCAG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924214 6 +  60714840 agccag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393886 6 - 106955855 AGCCAG
i nomLeu3.chr10                 C 0 C 0
s chlSab2.chr6                   47649651 6 +  50890351 agccag
i chlSab2.chr6                  C 0 I 1937
s calJac3.chr22_GL285922_random     62086 6 +    138250 ggccag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e macFas5.chr19                  55859936 308 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=3338.000000
s hg38.chr19_GL949751v2_alt        978051 5 +   1002683 ATGtg
s panTro4.chr19                  59972481 5 +  63644993 GCGtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924220 5 +  60714840 gcgtg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393892 5 - 106955855 GCGtg
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     62092 5 +    138250 gcatg
i calJac3.chr22_GL285922_random C 0 I 385
e canFam3.chr1                   20137241 1695 - 122678785 I
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e macFas5.chr19                  55859936 308 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=234121.000000
s hg38.chr19_GL949751v2_alt        978056 476 +   1002683 taggga----aaagagagattagactgttactgtgtctatatagaaaggaaagaca-taagagactccattttgaaaaagacctgtacttt--gaacaattgctttgctgagatgttgttaatttgtagctttgacccagccactttgacccaatctggagctcacaaaaacctgtgttgtatgaaatcaaggtttaagggatctagggctgtgcaggaagtgccttgttaac-acaatgtttccaagcagtatacttggt-aaaagtcatcgccagtctctagtctcaataaaccaggggcacgatgcactgcagaaagctgcagggacctctgcccttgaacacagagtattgtccaaggtttctccccgtgggatagtctgaaatatggcctcgtgggatgagaaagacctgaccgtcccccagcccaacacccgtaaagggtctgtgctgaggtggattggtaaaagaggaaagcctcttg
s panTro4.chr19                  59972486 476 +  63644993 taggga----aaagagagattagactgttactgtgtctatatagaaaggaaagaca-taagagactccattttgaaaaagacctgttcttt--gaacaattgctttgctgagatgttgttaatttgtagctttgacccagccactttgacccaatctggagctcacaaaaacctgtgttgtatgaaatcaaggtttaagggatctagggctgtgcaggacgtgccctgttaac-acaatgtttccaagcagtatacttggt-aaaagtcatcgccagtctctagtctcaataaaccaggggcacaatgcactgcggaaagccgcagggacctctgccattgaacgcggggtattgtccaaggtttctccccatgggacagtctgaaatatggcctcgtgggatgagaaagacctgaccgtcccccagcccgacacccataaagggtctgtgctgaggtggattagtcaaagaggaaagcctcttg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924225 483 +  60714840 tagggaaaagaaagagagattagactgttactgtgtctatatagaaaggaaagacattaagagactccattttgaaaaagacctgtactttgagaacaattgctttgctgagatgttgttaatttgtagctttgccccagccactttgacccaacctggagctcacaaaaacctgtgctgtatgaaatcaagttttaagggatctacggctgtgcaggacatgcctcgttaac-aaaatgtttacaagcagtatacgtggtaaaaagtcatcgccattctctagtctcaataaaccaggggcacaatgcactgcagaaagccgcagggacctctgcccttgaaagcggggtattgtccaaggtttctccccatgtgatagtctgaaatatcgcctcgtgggatgagaaagacctgaccgtcccccagccggacacccgtaaagggtctgtgctgaggtgga-tagtaaaagaggaaggcctctcg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103393897 477 - 106955855 taggga----aaagagagatcagactgttactgtgtctatacagaaaggaaagaca-taagagactccattttgaaaaagctctgtacttt--aaacaattgcttcactgagaggttgttcatttgtagcttcgccccagccgctttgacccaacctggagctcacaaaaacacgtgctgtatggaatcaaggttgaagggatccagggctgtgcaggacgtgccttgttaacaaaaatgtttacaggcagtgtacttggt-agaagtcatcgccattctctagtctcaataaaccaggggcacaatgcactgtggaaagccgcagggacctctgccctggaaagcggggtgttgtccaaggtttctccccatgagatagtctgaaatatggcctcgtgggatgagaaagacctgaccgacccccagcccaacacccgtaaagggtctgtgctgaggaggattagtaaaagaggaaagcctcttg
i nomLeu3.chr10                 C 0 M 1720
e canFam3.chr1                   20137241 1695 - 122678785 I
e calJac3.chr22_GL285922_random     62097 385 +    138250 I
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e macFas5.chr19                  55859936 308 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=135864.000000
s hg38.chr19_GL949751v2_alt        978532 522 +   1002683 cagttgagagagaggaaggccactgtctcctgcctgaccctgggaactgaatgtctcggtataaaacctgattgtacatttgttcaattctgagacaggagaaaagccgccctatggcgggaggcgagacatgtttacagcaatgctgccttgttattctttactccgctgagatgtttgggtggagagaaacatcaatctggcctacgtgcacgtccaggcatagtaccttcccttgaacttaattatgtcatagattcttttgctcacatggtttttgctgac-----ctcattatcaccctgctctcctactacattcctttttgctgaaataatgaagataataatcagtaaaaactgagggaactcagaggccggtgccggtgcaggtccttggtatgctgagcgccggtcccctgggcccactgttgtttctctatactt------tgtgtcttatttcttttctcagtctctcgtcccacccaactagaaatacccacaggtgtggaggggcaggccaccccttca
s panTro4.chr19                  59972962 528 +  63644993 cagttgagatggaggaaggccactgtctcctgcctgcccctgggaactgaatgtctcggtataaaacccgactgtacatttgttcaattctgagataggagaaaaaccgccctatggtgggaggcgagacatgttggcagcaatgctgccttgttattctttaccccgctgagatgtttgggtggagagaaacatcaatctggcttacgtgcacgtccaggcatagtaccttcccttgaacttaatgacatcatacattcttttgctcacatgttttttgctgac-----ctcactatcaccctgctctcctactacattcctttttgctgaaataatgaagataataatcaataaaaactgagggaactcagaggccggtgccggtgcaggtccttggtgtgctgagcgccggtcccctgggcccactgttgtttctctatactttgtctctgtgtcttatttcttttctcagtctctcgtcccacccgactagaaatacccacaggtgtggaggggctggccaccccttca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56924708 531 +  60714840 cagtcgagatagaggaaggccactgtctcctgcctgcccctgggaactgaatgtctcggtataaaacccgattgtacatttgttcaattctgagatagaagaaaaaccgccctatggtgggaggcgggacatgtttgcagcaatgctgccttgttattctttactccgctgagatgtttgggtggagagaaacataaatctggcctacgtgcacgtccaggcatattaccttcccttgaacttaattatgacatagattcttttgctcac--gttttttgctgaccttctcttattatcaccctgctctcctactacattcctttttgctgaaataatgcagataataatcaataaaaactgagggaactcagaggccggtgccggtgcaggtccttggtgtgctgagtgccagtcccctgggcccactgttgtttctctatactttgtctctgtgtcttatttcttttctcagtctctcgtcccacccgagtagaaatacccacaggtgtggaggggcaggccaccccttca
i ponAbe2.chr19                 C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e calJac3.chr22_GL285922_random     62097 385 +    138250 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e macFas5.chr19                  55859936 308 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=337190.000000
s hg38.chr19_GL949751v2_alt        979054 696 +   1002683 caggcgtggtggtgcacacctgtaatctcagctactcagggggctgaggcacgagaattgcttgaacctggaaggcggaggttgcagtgagtcgaaatggtgccagcctgggcaacagagcgagactctgtctcaaaaaaaTTTAAATTTAAATTTAAAATGCCCGCtgcacgagattcccaaggctgctgtacgcattaccacagacttagtggcttaaaaccacataagtgcatcctcctccagttcggcaggtcaagagtccaaaacatgtctcactggaataaatcaaggtattggtagagtcaggttccttctggaggctctagggaagaatccacttccagctcctacagaccgccacattcctccactcttggccccgcctccatcttcaacctgcatcctcactggaacctctccttta--------------------tttatttatttatttacttatttatttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggctcaatctca-gctcactgtaaccttcgcctcacaggttcaagcgattctcctgccttagcctcctgagtggctgggattacaggcacatgccaccacacctggctaatttcttttgtatttttagtagagacagagttttaccacgttggtcaggctggtctcgaactcctgaccttgtgatccgcctgccttggcct
s panTro4.chr19                  59973490 691 +  63644993 caggcgtggtggtgcacacctgtaatctcagctactcagggggctgaggcacgagaattgcttgaacctggaaggcggaggttgcagtgagtcgaaatggtgccagcctgggcaacagagcgagactctgtctcaaaaaaaTTTAAATTTAAATTTAAAATGCCCGCtgcatgagattcccatggctgctgtatgcattaccacagacttagtggcttaaaaccacataagtgcatcctcctccagttcggcaggtcaagagtccaaaataggtctcactggaataaatcaaggtattggtagagtcaggttccttctggaggctctagggaagaatccacttccagctcctacagaccgccacattcctccactcttggccccgcctccatc-tcaacctgcatcctcactggaacctctcc------------------------tttatttatttatttacttatttatttttgagacagagtctcgctctgtcgcccaggctggcgtgcagtggcacaatctca-gctcactgtaaccttcgcctcacaggttcaagcgattctcctgccttagcctcctgagtggctgggattacaggcacatgccaccacacctggctaatttcttttgtatttttagtagagacagagttttaccatgttggtcaggctggtctcgaactcctgaccttgtgatccgcctgccttggcct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56925239 692 +  60714840 caggcgtggtggcgcacacctgcaatctcagctactcagggggctgaggcacgagaattgcttgaacctggaaggtggaggttgcagtgagtcgaaatggtgccagcctgggcaacagagcgagactctgtctcaaaaaaaTTTAAATTTAAATTTAAAATGCCCGCtgcatgagattcccatggctgctgtacgcattgccacaaacttagtggcttaaaaccacataagtgcatcctcctccagttcggcaggtcaagagtccaaaatacgtctcactgggataaatcaaggtattggcagagtcaggttccttctggaggctctaggggagaatccacttccagatcctacagaccaccacattcctccactcttggccccgcctccatcttcaaactgcatcctcactggaaccgctcc------------------------ttTATTGATTGATTGAttt-tttttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcatgctcatggtaaccttcgcctcacaggttcaagcgattctcctgccttagcctcctgagtggctgggattactggcacatgccaccacacctggctaatttcttttgtatttttagtagagatggagttttaccacgttggtcaggctggtctctaacgcctgaccttgtaatctgcctgccttggcct
i ponAbe2.chr19                 C 0 I 373
s macFas5.chr19                  55860244 711 +  59248254 caggcatggtggtgcacacctgtaatc-cagctactccagggactgaggcacgagaattgcttgaacccggaaggcgggggttgcagtgagtcaaaatggcgccagcctgggcaacagggtaagacgccgtctcaaaaaaaTTTTAATTTAAATTTAAAATGCCCACtgaatgagatttccgcggctgctgtacacattaccacaaacttagtggcttaaaaccacgtaagtgcatcctcctacagttctttaggtcaagagtccaaaatacgtctcactggaataaatcaaggtattggcagagtcaggttccttctggaggctctaggggagaatccatttccagctcctacaaatcgccacattcctccactcctggccccgcctccatcttcaaaccgcataatcactggaacctctcctttatttatttttatttttttatttttatttatttatttatttattta-ttttgagacggagtctcactctgtctcccaggctggagtgcagtggcccgatctcg-actcactacaacctccgcctcccgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgtccaccaccacccccggctaat---ttttgtatttttagtagagacgggatttcaccatattggccaggctggtctcgaactcctgaccttgtgatccgcccgcctcagcct
i macFas5.chr19                 I 308 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e calJac3.chr22_GL285922_random     62097 385 +    138250 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=9813.000000
s hg38.chr19_GL949751v2_alt        979750 38 +   1002683 cccaaagtgctgcgattacaggcgtgagccaccacacc
s panTro4.chr19                  59974181 38 +  63644993 cccaaagtgctgcgattacaggcgtgagccaccacacc
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55860955 38 +  59248254 cccaaagtgctgggattacaggcgcgagccaccgcgcc
i macFas5.chr19                 C 0 I 711
e canFam3.chr1                   20137241 1695 - 122678785 I
e ponAbe2.chr19                  56925931 373 +  60714840 I
e calJac3.chr22_GL285922_random     62097 385 +    138250 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=382.000000
s hg38.chr19_GL949751v2_alt        979788 4 +   1002683 caac
s panTro4.chr19                  59974219 4 +  63644993 caac
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e ponAbe2.chr19                  56925931 373 +  60714840 I
e calJac3.chr22_GL285922_random     62097 385 +    138250 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e macFas5.chr19                  55860993 711 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=20196.000000
s hg38.chr19_GL949751v2_alt        979792 88 +   1002683 aacctctccttctatcttccatctcccctctgactgagcctcctgctccctcttataaggaccctataagactacaaggcaggaccgg
s panTro4.chr19                  59974223 88 +  63644993 aacctctccttctatcttccatctcccctctgactgagcctcctgctccctcttataaggaccctataagactacaAGGCTGGACTgg
i panTro4.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     62482 88 +    138250 aacctctccttctggcttcctcctgccctctgactgagcctcctgctccctcacataaggaccttataagactacaaagtaggccgtg
i calJac3.chr22_GL285922_random I 385 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e ponAbe2.chr19                  56925931 373 +  60714840 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e papAnu2.chr19                  47949315 2054 +  51301725 I
e macFas5.chr19                  55860993 711 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=5151.000000
s hg38.chr19_GL949751v2_alt        979880 8 +   1002683 cacagtgc
s panTro4.chr19                  59974311 8 +  63644993 cacagtgc
i panTro4.chr19                 C 0 C 0
s macFas5.chr19                  55861704 8 +  59248254 catggtgg
i macFas5.chr19                 I 711 C 0
s papAnu2.chr19                  47951369 8 +  51301725 cacggtgg
i papAnu2.chr19                 I 2054 C 0
s calJac3.chr22_GL285922_random     62570 8 +    138250 cacggtgg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e ponAbe2.chr19                  56925931 373 +  60714840 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=80183.000000
s hg38.chr19_GL949751v2_alt        979888 69 +   1002683 ctcacacctgtaatcccagcactttgggaggccaagacaggaggatcacttgaggtcaggagttcgaga
s panTro4.chr19                  59974319 69 +  63644993 ttcacacctgtaatcccagcactttgggaggccaaggcgggaggatcacttgatgtgaggagttcgaga
i panTro4.chr19                 C 0 M 543
s ponAbe2.chr19                  56926304 69 +  60714840 ctcacacctgtaatcccagcactttgggaggccaaggcggcaggatcacttgaggtcaggagttcgaga
i ponAbe2.chr19                 I 373 C 0
s macFas5.chr19                  55861712 69 +  59248254 ctcatgcctgtaaccccagcactttgggaggccgaggtgggcagatcacctgtggtcaggagttcgaga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47951377 69 +  51301725 ctcatgcctgtaaccccagcactttgggaggccgagatgggcagatcacctgtggtcaggagttcaaga
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     62578 69 +    138250 ctcacacctgtaatcccagcactttgggaggccgaggtgggaggatcgcttgaggtccggagtttgaga
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=19547.000000
s hg38.chr19_GL949751v2_alt        979957 57 +   1002683 ccagc--catggccaacatgctgacaccccatctctactaaaaatacaaaaatt-agcag
s ponAbe2.chr19                  56926373 57 +  60714840 ccagc--catggccaacatgctgacaccccatctctactgaaaatacaaaaatt-agcag
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55861781 53 +  59248254 ccaacagcctgaccaacatggagaaatctcatgc------aaaatacaaaatta-gccag
i macFas5.chr19                 C 0 I 6
s papAnu2.chr19                  47951446 53 +  51301725 ccaacagcctgaccaacatggagaaatctcatgc------aaaatacaaaatta-gccag
i papAnu2.chr19                 C 0 I 6
s calJac3.chr22_GL285922_random     62647 48 +    138250 ------------ccaaaatgctgacagcccacttctcctaaaaatacaaaaattgggccg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e rheMac3.chr19                  60702557 3619 +  64156825 I
e panTro4.chr19                  59974388 543 +  63644993 M

a score=137688.000000
s hg38.chr19_GL949751v2_alt        980014 250 +   1002683 ggcttggtggtgcacgcctgtagagtcagctactcgggaggctgaagtgggaggaccacctgagcccagggagggtgaggctgcagtgagctgtgacagcatgactgcactccagcctgggtgaca--gagagaccctgtctccaaaaaaaaaaaaagactacatgataatcataagatccttcacttggccgggcacggtggctcacgcctgtaaccccagcactttgggaggccaagg--------tggccagatccc
s panTro4.chr19                  59974931 247 +  63644993 ggctcggtggtgcacgcctgtagcgtcagctactcgggaggctgaagtgggaggaccacctgagcccagggagggtgaggctgcagtgagctgtgacagcatgactgcactccagcctgggtgaca--gagagaccctgtctccaaaaaaaaaa---gaCTACATGATAATCATAAGATCCTTCACTTggccgggcacagtggctcacgcctgcaaccccagcactttgggaggccaagg--------tggccagatccc
i panTro4.chr19                 M 543 C 0
s ponAbe2.chr19                  56926430 245 +  60714840 ggcttggtggtgcacacctctagactcaactactcgggaggctgaggtgggaggaccacctgagccccgggaggttcaggctgcagtgagctgtgacagcatgactgcactccagcctgggtgaca--gagagaccctgtctccaaaaaaaa-----gaCTACATGATAATCATAAGATCCTTCACTTggccgggcatggtggctcacgcctgtaaccccagcactttgggaggccaagg--------tgggcagatcac
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55861840 201 +  59248254 ggcacggtggctcatgcctgtagtcccagcactttgggaggccaaggagggctgatcac--gaggtcaggaga--------------------------------tccagaccatcctggctaacacggtgaaaccctgtctctactaaaaa--------tacaaaa-----------------aattagctgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcaggaaccc
i macFas5.chr19                 I 6 I 43
s papAnu2.chr19                  47951505 201 +  51301725 ggcacggtggctcatacctgtagtcccagcactttgggaggccaaggcgggctgatcac--gaggtcaggaga--------------------------------tccagaccatcctggctaacacgatgaaaccctgtctctactaaaaa--------tacaaaa-----------------aattagctgggcgtagtggcgggcgcctgtagtcccagccactcaggaggctgaggcagaagaatggcatgaaccc
i papAnu2.chr19                 I 6 I 11
s calJac3.chr22_GL285922_random     62695 194 +    138250 ggctcagtggctcacgcctgtaatcccagcactttgggaggttgaggccagtggatcacctgaggtcaggagt--------------------------------tcaggaccagcctgtccaacatggtaaggccccgtctctagtaaata--------tacaaa------------------aattagctgggcgtggtggtgggcgcctgtaatctcagttactcaagaggctgaggcaggagaattgc--------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=5297.000000
s hg38.chr19_GL949751v2_alt        980264 20 +   1002683 ctttggtcgggagctcaaga
s panTro4.chr19                  59975178 20 +  63644993 ctttggtcgggagctcaaga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56926675 20 +  60714840 ctttggtcgggagctcaaga
i ponAbe2.chr19                 C 0 C 0
s papAnu2.chr19                  47951717 17 +  51301725 ctt--gcagtgagc-cgaga
i papAnu2.chr19                 I 11 I 16
s calJac3.chr22_GL285922_random     62889 20 +    138250 ttgaacccaggaggtagagg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e macFas5.chr19                  55862041 43 +  59248254 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=19996.000000
s hg38.chr19_GL949751v2_alt        980284 45 +   1002683 -------------------------------ccagcctgaccaac-atggagaaacctcgtctc---tactaaaaataca
s panTro4.chr19                  59975198 45 +  63644993 -------------------------------ccagcctgaccaac-atggagaaacctcgtctc---tactaaaaataca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56926695 45 +  60714840 -------------------------------ccagcctgaccaac-atggagaaacctcgtctc---tactaaaaataca
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55862084 41 +  59248254 -------------------------------ccagcctgggggat-acagccagactccatctc-------aaaaaaaaa
i macFas5.chr19                 I 43 I 2
s papAnu2.chr19                  47951750 48 +  51301725 -------------------------------ccagcctgggggac-agagcgagactccatctcaaaaaaaaaaaaaaaa
i papAnu2.chr19                 I 16 I 2
s calJac3.chr22_GL285922_random     62909 69 +    138250 ctgcagtgagctgagatcgcgccactgcactccagcctgggcaacaacagcaaaacttcatcta---------aaata--
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e chlSab2.chr6                   47649657 1937 +  50890351 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=138151.000000
s hg38.chr19_GL949751v2_alt        980329 88 +   1002683 aaattagacaggcgtggtggcacatgcctgtaatcccagctactcaggaggctgaggccggacaatcgcttgaaccc-gggaggtggag
s panTro4.chr19                  59975243 88 +  63644993 aaattagacaggcgtggtggcacatgcctgtaatcccagctactcaggaggctgaggccggacaatcgcttgaaccc-gggaggtggag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56926740 88 +  60714840 aaattagacaggcgtggtggcacgtgcctgtaatcccagctactcaggaggctgaggccggacagtcgcttgaaccc-gggaggtggag
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55862127 88 +  59248254 aaattagccaggcgtggtggcacatgactgtaatcccagctactcgggaggttgaggccggagaattgcttgaaccc-gggaggcggag
i macFas5.chr19                 I 2 C 0
s papAnu2.chr19                  47951800 88 +  51301725 aaattagccaggcgtggtggcatatgcctgtaatcccagctacttgggaagttgagggcggagaattgcttgaaccc-gggaggcggag
i papAnu2.chr19                 I 2 C 0
s chlSab2.chr6                   47651594 88 +  50890351 aaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggttgaggctggagaattgcttgaaccc-gggaggcggag
i chlSab2.chr6                  I 1937 C 0
s calJac3.chr22_GL285922_random     62978 87 +    138250 --attagcagggcatagtgatacacacctgtagactcagctattcgggaggctgaggtaggaagatcacctgagcccagggaggttgag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e nomLeu3.chr10                 103394374 1720 - 106955855 M
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=340447.000000
s hg38.chr19_GL949751v2_alt        980417 175 +   1002683 gttgtggtgagccgaggtcgtgccattgcactccagcctgggcaacaacagcgaaactctgtctcaaaaaaaaaaaa----------------------gatgcttcacttaacacatcagcgagaacctctgacacgtgaggtaatgtcgtcacaccttccgaggattaggacgtggacccctctacggagtcacg
s panTro4.chr19                  59975331 177 +  63644993 gttgtggtgagccgaggtcgtgccattgcactccagcctgggcaacaacagcgaaactctgtctcaaaaaaaaaaaa--------------------aagaTGcttcacttaacacatcagcgagaacctctgacacgtgaggtaatgtagtcacaccttccgaggattaggacgtggacccctctacggagtcacg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56926828 176 +  60714840 gttgcggtgagccaaggttgtgccattgcactccagcctgggcaacaacagtgaaactttgtctcaaaaaaaaaaaa---------------------agatccttcacttaacacatcagcaagaacctctgacacgtgaggtaatgtagtcacacgttccgaggattaggacgtggacccctctacggagtcacg
i ponAbe2.chr19                 C 0 I 874
s nomLeu3.chr10                 103396094 180 - 106955855 gttgcggtgagccaaggtcgtgccatcgcactccagcctgggcaacaacagcgaaactctgtctcaaaaaaaaaaaaaaa-----------------aagatccttcacttaacacatcagcaagaacctctcacacgtgaggtaatgtagtcacacgttctgaggattaggacgtggacccctctgcggagccagg
i nomLeu3.chr10                 M 1720 C 0
s macFas5.chr19                  55862215 174 +  59248254 tctgtggtgagccaaggtagcgccattgcgctccagcctgggcaacaagagcaaaattccgtctc-aaaaaaaaaaa----------------------gatccttcacttaacacatcagcaagaacctctgacacctgaggtaatgtagtcacaggttccgaggattaggacgtggacccctctgtggagccatg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47951888 173 +  51301725 tctgtggtgagccaaggtcgGGCtaccgcgctccagcctgggcaacaagagcaaaactccgtctc--aaaaaaaaaa----------------------gatccttcaCTTAACACATCAGCAAGAACCTCTGACACCTGAGGTAATGTAGTCACAGGTTCCGAGGATTAGGACGTGGACCCCTCAGTGGAGCCATG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47651682 172 +  50890351 tctgtggtgagccaaggtcgggctactgtgctccagcctgggcaacaagagcaaaactccttctc---aaaaaaaaa----------------------gatccttcacttaacacatcagcaagaacctctgacacctgaggtaatgtagtcacaggttccgaggattaggacgtggacccctctgtggagccatg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     63065 193 +    138250 actgcagtgagctgtgacagcgtgactgcattccagcctgagcgac---agagagaccctgtctcaaaaggaaaaaaaaagcctacatgataatcataaggtccttcacttaacacatcagcaagaccctctgatgctcgaggtaatgtagtcacgagtacc-aggactgggacgtggacacctctccagagccgtg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=318298.000000
s hg38.chr19_GL949751v2_alt        980592 161 +   1002683 actctgcccaccacaCCCATGTCCCACAGAGGCTAACGCTGGCAACAAGATAGTGTCCAGCAACAGGAGGCTGAGCAGGTAA-ACAGCACTGCACCCACAGGAGAGAAGGGCACCATGCAATACAGTGGCCACCAGCCACAGA-----------------------------------GGCTAATTTTTAAGAAAGT
s panTro4.chr19                  59975508 161 +  63644993 actctgcccaccacaCCCATGTCCCACAGAGGCTAACGCTGGAAACAAGATAGTGTCCAGCAACAGGAGGCTGAGCAGGTAA-ACAGCACCGCACCCACAGGAGAGAAGGGCACCATGCAATACAGTGGCCACCAGCCACTGA-----------------------------------GGCTACTTTTTAAGAAAGT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56927878 161 +  60714840 actctgcccaccacaCCCATGTCCCACAGAGGCTAACACTGGAAACAAGGCAGTGTCCAGCAACAGGAGGCTGAGCAGGTAA-ACAGCACTGCACCCACAGGAGAGAAGGGCACCATGCAATACAGCGGCCACCAGCCACTGA-----------------------------------GGCTAATTTTTAATAAAGT
i ponAbe2.chr19                 I 874 C 0
s nomLeu3.chr10                 103396274 160 - 106955855 actctgcccaccacaCCCATGTCCCACAGAGGCTAACGCTGGAAACAAGACAGTGTCCAGCAACAGGAGACTGGGCAGGTAA-ACAGCACTGCACCCACAGGAGAGAAGGGCACCATGCAATACAGTGGTCACCAGCCACTGA-----------------------------------GGCTAATTTTTAAGAAAG-
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55862389 169 +  59248254 actctgcccaccacaCCCATGTCCCACAGAGGCTAATGCTGGAAACAAGCCAGTCTCCAGCAACAGGAGGCTGAGCAGGTTA-ACAGCACTGCACCCACAGGACAGAAGGGCACCATGCAATACAGTGTCCACCAGCCACTAATTTTTTAAGTAAAAAA---------------------------TTTAAGTAAGT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47952061 178 +  51301725 ACTCTGCCCACCACACCCATGTCCCACAGAGGCTAATGCTGGAAACAAGCCA---TCCAGCaacaggaggctgagcaggtaACACAGCACTGCACCCACAGGACAGAAGGGCACCATGCAATACAGTGTCCACCAGCCactaattttttaagtaaaaaaaattagttt----------------tttttaagtaagt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47651854 196 +  50890351 actctgcccaccacaCCCATGTCCCACAGAGGCTAATGCTGGAAACAAGCCAGTTTCCAGCAACAGGAGGCTGAGCAGGTAC-ACAGCACTGCACCCACAGGAGAGAAGGGCACCATGCAATACAGTGTCCACCAGCCACTAATTTTTTAAGTAAAAAAAATTAGTTTTACTTAAAAAAACTAATTTTTAAGTAAGT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     63258 158 +    138250 actctgcccaccacaCCCATGTCCCACGGAGGCTAATGCTGGAAATAC-ACAATATCCAGCAACAGGGGGCTGAGCAGATCA-GCAGCACAG--CCCACAGGAGACACAAACTGCAGGACACACAGTGGCCACCCGCCACTGA-----------------------------------GGCTTATTTTTAAATAAGT
i calJac3.chr22_GL285922_random C 0 I 134
e canFam3.chr1                   20137241 1695 - 122678785 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=11919.000000
s hg38.chr19_GL949751v2_alt        980753 7 +   1002683 TTAAATT
s panTro4.chr19                  59975669 7 +  63644993 TTAAATT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56928039 7 +  60714840 TTAAATT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103396434 6 - 106955855 -TAAACT
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55862558 7 +  59248254 TTAAATT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47952239 7 +  51301725 ttaAATT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47652050 7 +  50890351 TTAAATT
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e calJac3.chr22_GL285922_random     63416 134 +    138250 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=653960.000000
s hg38.chr19_GL949751v2_alt        980760 319 +   1002683 AAGTAggctgggcgaggtggctcacgtctgtaatcccagcacttt-ggaggccgaggcaggcggatc------acctgagg-----gcaggtgtttgagaccag---------------------cctggccaacatggc-aaaaccccgtctct-----gcgaaaaatacaaaaattagccgggcgtggtggcgcacgtgtgatctcagctcctggggacgccaaggtgggaggatcacctgagcccaggaggtcaaggctgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagccagattctgccttt-aaaaataaacgaacaaataaataaTACAAAACAA
s panTro4.chr19                  59975676 319 +  63644993 AAGTAggctgggcgaggtggctcacgtctgtaatcccagcacttt-ggaggccgaggcaggcggatc------acctgagg-----gcaggtgtttgagaccag---------------------cctggccaacatggc-aaaaccccgtctct-----acgaaaaatacagaaattagccgggcgtggtggcgcacctgtgatctcagctcctggggacgccaaggtgggaggatcacctgagcccaggaggtcaaggctgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagccagattctgccttt-aaaaataaacgaacaaataaataaTACAAAACAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56928046 320 +  60714840 AAGTAggctgggcgaggtggctcacgtctgtaatcccagcactctgggaggccgaggcgggcgaatc------acctgagg-----gcaggtgtttgagaccag---------------------cctggccaacatggc-aaaaccccgtctct-----actaaaaatacaaaaattagccgggcgtggtggcgcacctgtggtctcagctcctggggacgctaaggtgggaggatcacctgagcccaggaggtcaaggctacagtgagccaagatcgcgccaccgcactccagcctgggcgacagagccagattctgccttt-aaaaataaacgaacaaataaataaTACAAAACAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103396440 319 - 106955855 AAGTAggctgggcgaagtggctcacacctgtaatcccagcactctgggaggccgaggcgggcggatc------acccgagg-----gcaggtgtttgagaccag---------------------cctggccaacatggc-aaaaccccgtctct-----actaaaaatacaaaaattagccgggcgtagtggcgcgcctgtggtctcagctcctggggacgctaaggtgagaggatcacctgagcccaggaggtcaaggctgcagtgagccaagatcgcgccaccgcactccagcctgggtgacagggccagattctgccttt-aaaaat-aacgaacaaataaataatacaaaACAA
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55862565 317 +  59248254 AAGAAggccgggcgaggtggctcacgtctgtaatccctgcactttgcgaggccaaggcgtgcggatc------acctgagg----cgcaggtgtttgagaccag---------------------cctggccaacatggcaaaaaccctgtctct-----cctaaaaaaacaaaaattagccgggcgtggtggcgcacctgtggtctcagctcctggggacgctcaggtaggaggatcacctgagcccaggaggacaaggctgcagtgagccaagagcgcgccactgcactccaggctgggcgccagagccagatgctgccttt-aaaaataaacgaacaaataaataaT-----ACAA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47952246 319 +  51301725 AAgaaggccgggcgaggtggctcacgtctgtaatccctgcactttgggaggccgaggcgggcggatc------acctgagg----cgcaggtgtttgagacaag---------------------cctggcaaacatggc-aaaaccccgtctct--aaaaaaaaaaaaacaaaaattagccgggcgtggtggcgcacctgtagtctcagctcctggGGActctcaggtgggaggatcacctgagcccaggaggttaaggctgcagtgagccacgagcgcgccactgcactccaggctgggcaacagagccagattctgccttt-aaaaataaacgaacaaataaataat-----acaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47652057 317 +  50890351 AAGAAggccgggcgaggtagctcacgtctgtaatccctgcactttgggaggccgaggcgggcggatc------acctgagg----ggcaggtgtttgagaccag---------------------cctggccaacatggc-aaaaccccgtctct-----actaaaaaaacaaaaattagccgggcgtggtggcgcacctgtggtctcagctcctggggacgctcaggtgggaggatcacctgagcccaggaggacaaggctgcagtgagccaagagcgcgccactgcactccaggctgggcgccagagccagattctgcctttaaaaaataaacgaacaaataaataaT-----ACAA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     63550 341 +    138250 aaattagccaggcgtcgtggcagaggcctgtagtcccagctattcaggagaatgaggcagaaaaaccgatttaacctgggagggtcggaggttgcagtgaccggagatcgtgccactgcactccacctgggtgacagaac-aagactccgtctcaaaaaaaaaaaaaaaaaaaaaattagccgggcgtggtggcgcacctgtggtctcagctcctggggacgctaaggtgggaggatcacctgaatccaggtgggcaaagct-------gccgagaccgcgccactgcactccagcctgggtgacagagccagattctgcctct-aaaactaaatgaacaaataaataat---------
i calJac3.chr22_GL285922_random I 134 C 0
e canFam3.chr1                   20137241 1695 - 122678785 I
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=1074976.000000
s hg38.chr19_GL949751v2_alt        981079 453 +   1002683 CAAAATAAAGAGTTT-AAAAGTCTGGAAGGAAAGCAACATTTACAAGGGCCCAGGCTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCCGGCCAGA---GCGCAGGTTTGCCCCACTCCGGGCGGGCACTGCGGGTCGGGAGCTACGGGGCCTGGACCCGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGCCTTCCCGGCCCCTGCGCTGGGGGCCCGCCTTGACCGCGCACGCGGGGCTAGAATGTACTCACTTGAGCAGCACGGCGGCGCCTGCTACCGTGCCCAGCGCCGACAGCGGCAGCAGGTAGCGGCTCATGCCGGGCCGGGGACAGGCGTCAGGCGTCAGGGGTCGGCGCGGAGCTTGCTGCACACCAGCCGCCTGGGTAGCTCCGAGGAAGAGCGCGCGACGCAGCCACAGGCGAGCGGAGGCGCAGGCGCGGCTGGGCCCGCG
s panTro4.chr19                  59975995 446 +  63644993 CAAAATAAAGAGTTT-AAAAGTCTGGAAGGAAAGCAACATTTACAAGGGCCCAGGCTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCCGGCCAGA---GCGCAGGTTTGCCCCACTCCGGGCGGGCACTGCGGGTCGGGAGCTACGGGGCCTGGACCCGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGCCTTCCCGGCCCCTGCGCTGGGGGCCCGCCTTGACCGCGCACGCGGGGCTAGAATGTACTCACTTGAGCAGCACGGCGGCGCCTGCTACCGTGCCCAGCGCCGACAGCGGCAGCAGGTAGCGGCTCATGCCGGGCCGGGGACAGGCGTCAGG-------GGTCGGCACGGACCTTGCTGCACACCAGCCGCCTGGGTACCTCGGAGGAAGAGCGCGCGACGCAGCCACACACGAGCGGAGGCGCAGGCGCGGCTGGGCCCGCG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56928366 446 +  60714840 CAAAATAAAGAGTTT-AAAAGTCTGGAAGGAAAGCAACATTTACAAGGGCCCAGGCTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCTGGCCAGA---GCGCAGGTTTGCCCCACTCCGGGTAGGCACTGCGGGTCGGGAGCTACGAGGCCTCGACCCGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGCCTTCCCGGCTCCTGCTCTGGGGGCCCGCCAGGACGACGCACGCGGGGCTAGAATGTACTCACTTGAGCAGCACGGCGGCGCCTGCTACCGTGCCCAGCGCCGACAGCGGCAGCAGGTACCGGCTCATGCCGGGACGGGGACAGGGGTCAGG-------GGTCGGCGCGGAGCTTGCTGCACACCAGCCACCTGGGCAGCTCGGAGGAAGAGCGCGCGACGCAAACACACACGAGCCGAGGCGCAGGCGCCGCTGGGACCGCG
i ponAbe2.chr19                 C 0 I 3
s nomLeu3.chr10                 103396759 446 - 106955855 CAAAATAAAGAGTTT-AAAAGTCTGGAAGGAAAGCAACGTTTACAAGGGCCCAGGCTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCCGGTCAGA---GCGCAGGTTTGCCCCACTCCGGGCGGGCCCTGCGGGTCGGGAGCTACGGGGCCTGGACCCGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGCCTTCCCGGCCCCTGCGCGGGGGGCCCGCCTTGACCGCACACGCGGGGCTAGAATGTACTCACTTGAGCAGCACGGCGGCGCCTGCTACCGTGCCGAGCGCCGACAGCGGCAGCAGGTAGCGGCTCATGCCCGGCCGGGGACAGGGGTCAGG-------GGTCGGCGCGGAGCTTGCGGCACACCAGCCGCCTCTGCAGCTCCGAGTAAGAGCGCGCGGCGCAGCCACGCACGAgcggaggcgcaggcgcggctgggcccgcg
i nomLeu3.chr10                 C 0 I 3
s macFas5.chr19                  55862882 446 +  59248254 TAAAATAAAGAGTTT-AAAAGTCTGGAAGGAAAGCAACATTTACAAGGGCCCTGGTTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCCGGCCAGA---GCGCAGGTTTGCCCCACTTGGGGCGGACACTGCCGGTCGGGAGCTGCGGGGGCTGGACCCGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGTCTTCCCTGCCCCTGCGCGGGAGGCCTGCCTAGACCGTGCACGCGGGGCTAGAAGGTACTCACCTGAGCAGCACGGCGGCGCCTGCTAGTGTGCCCAGCGCCGACAGCGGCAGCAGGTAGCGGTTCATGCCGGGCCGGGGACAGGGGTCGGG-------GGTCGAAGCGGAGCTGGTTGCACACCAGCCGCCCCGACCCCTCGGAGGAAGAGCGCGCGGCGCAGCTATCCAcgtgcggaggcgcaggcgcggcggggcccgcg
i macFas5.chr19                 C 0 I 3
s papAnu2.chr19                  47952565 446 +  51301725 taaaataaagagttt-aaaaGTCTGGAAGGAAAGCAACATTTACAAGGGCCCAGGTTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCCGGCCAGA---GCGCAGGTTTGCCCCACTTGGGGCGGACACTGCCGGTCGGGAGCTGCGGGGGCCGGACCCGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGCCTTCCCTGCCCCTGCGCGGGAGGCCTGCCTTGACCGTGCACGCGGGGCTAGAAGGTACTCACCTGAGCAGCACGGCGGCGCCTGCTAGTGTGCCCAGCGCCGACAGCGGCAGCAGGTAGCGGCTCATGCCGGGCCGGGCACACGGGTCGGG-------GGTCGAAGCGGAGCTGGCTGCACACCAGCCGCCCCGGCCCCTCGGAGGAAGAGCGCGCGGCGCAGCCACCCACGTGCGGAggcgcaggcgcggcggggcccgcg
i papAnu2.chr19                 C 0 I 3
s chlSab2.chr6                   47652374 446 +  50890351 TAAAATAAAGAGTTT-AAAAGTCTGGAAGGAAAGCAACATTTACAAGGGCCCAGGTTCGCCCTT-CCCTCCGAGTGACCTTGGGCCGGTGACCTGGCCGGCCAGA---GCGCAGGTTTGCCCCACTCGGGGCTGACACTGCCGGTCGGGAGCTGCGGGGGCTGGACCCGGGA--GCGA-----GGGGCGGGGGTCTCCGCCGTCTTCCCTGCCCCTGCGCGGGAGGCCTGCCTTGACCGTGCACGCGGGGCTAGAAGGTACTCACCTGAGCAGCACGGCGGCGCCTGCTAGTGTGCCCAGCGCCGACAGCGGCACCAGGTAGCGGTTCATGCCGGGCCGGGGACAGGGGTCGGG-------GGTCGAAGCGGAGCTGGCTGCACACCAGCCGCCCCGGCCCCTCAGAGGAAGAGCTCGCGGCGCAGCCACCCACGTGCGGAGGCGCAGGCGCGGCGGGGCCCCCG
i chlSab2.chr6                  C 0 I 3
s calJac3.chr22_GL285922_random     63891 438 +    138250 ------aaaGAGTTTAAAAAGTCTGAAAGGAAAGCAACATTTACAAGGGCCCAGGCTCGCCCTT-CCCTCCGAGTGACCTTGCGCC-GTGACCCGGCCGGCCCGA---GCGCAGGTTTGTCCCATTCC-CGCAGGCAGCGCGGGTCGGGAGCTGCAGAAGCTGCACCTGGGT--GCGA-----GGGGCGGGGGTCTCCGCCGCCTTCCCTGCCCCTGCGCTGGGGGCCCGCCGCGACCGCGCACGCGGGGCTAGAATGTACTCACTTGAGCAGCACGGCGCCGCCTACGACGGTGCCCAGCGCCGACAGCGGCAGCAGGTAGCGGTTCATGCCGGGCCCGGGACGGGGGTCAGT-------GGTCAGCGCGGAGCCGACTTCAGACCCGCCGCCCGGGCAGCTCCG-GGAAGAACGCGAGACGCAGCCAAGCACAAGGGGAAGCGCAGGCGCAGTGGGGCCCACG
i calJac3.chr22_GL285922_random C 0 I 3
s canFam3.chr1                   20138936 394 - 122678785 CACACTGACAAGCGC-GGAAGTCTGGACCAGCAG----ACTTGCAAGGGCCCGGGCCCGCCCCTGCCCTCGGGGTGACCTTGGGCC-GTGACCTGCCCTCTCGGCCCTTCCTAGGTGTGCCCCCCAC-----------------------GCTGCCTGGACCAGCCCTAGGCTGGCGACCACCGGGGC-GGCCTCTCTCCCGCCCTCC--GCCCACCTgccgggggccagcc-cgcccgccggcgcg---------cgcACTCACCGGAGCAGCACGGCGCCACCCACCGCCGTGCCGAGCACAGACAGCGGTAGGAGGTAGCGGTTCATGCCGGG-------CAGGAGCGGGG-------GTCCGACGCCGAGCCCACCGGAGACCTGCCGCCT-GGTCGCTCCGAG---GAGCTCACGGC-CGGCTTCCCACGTGGGGAAGGACCAGCTCTGC----------
i canFam3.chr1                  I 1695 C 0
e rheMac3.chr19                  60702557 3619 +  64156825 I

a score=1487818.000000
s hg38.chr19_GL949751v2_alt        981532 477 +   1002683 TCCGGAACTGGGCT---GCGAGGGGCGGGGCGCGGGCGG-AGGGGGCGGGGATCCTAGGGACGGGACCTATGAGCATCGGTCCTGAGCGCTGTCACAGCTGGGATTGGTGGTTTCAGGAGCCTGTGGGCGTGGCTA-GT-CCGGGGGCGGG-----------GCCTATGGTTTGTTCGAATGACGTCACACTTGCCGCAGCGTATAAGGCGCTACGCAgtt----ctggagt-gaaataggttcgaatcccac--cactgtcaattccagactgtgaccctctgtgtgtctttcaactatatcagcctattccctcatctggaaatgtgtgtt---------taccttcttcatagacttttggagataatttgagaatttccatgcacagAAACAAGGATCTAGTAGCCTGtgggtacccaagctcctggggtcctgcaggagaaggcggctgggggcctggactcctgggtctgag------------------------------------ggaggaggggctgggggcctggactcctgggt
s panTro4.chr19                  59976441 475 +  63644993 TCCGGAACTGGGCT---GCGAggggcggggcgcgggcgg-agggggcggggATCCTAGGGACGGGACCTATGAGCATCGGTCCTGAGCGCTGTCACAGCTGGGAGTGGTGGTTTCAGGAGCCTGTGGGCGTGGCTGCGT-CCGGGGGCGGG-----------GCCTATGGTTTGTTCGAATGACGTCACACTTGCCGCACCGTATAAGGCGCTACGCAgtt----ctggagt-gaaataggttcgaatcccac--cactgtcaattccagactgtgaccctgtgtgtgtctttcaactatatcagcctattccctcatctggaaatgtgtgtt---------taccttcttcatagacttttggggataatttgagaatttccatgcacagAAACAAGGATCTAGTAGCCTGTGGGTACCCAAGCTcctggggtcctgcaggagaaggcggctgggggcctggactcctgggtctgag------------------------------------ggaggaggggctgggggcctggactcctg---
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56928815 478 +  60714840 TCCGGAACTGGGCT---GCGAggggcggggcgcgggcgg-agggggcggggATCCCAGGGGCGAGACCTATGAGCATCGGTCCTGAGCGCTGTCACAGCTGGGAGTGGTGGTTTCAGGAGCCTGTGGGCGTGGCTGAGT-CCGGGGGCGGA-----------GCCTATGGCTTGTTCGAATGACGTCACACTTGCCGCACCGTATAAGGCGCGACGCAGTT----CTGGGGT-GAAAtaggttcgaatcccat--cactgtcaattccagactgagaccctctgtgtgtctttcaactatatcagcctattccctcatctggaaatgtgtgtt---------taccttcttcatagacttttggggataatttgagaatttccatgcacagAAACAAGGATCTAGTAGCCTGtgggtacccaagctcctagggtcctgcaggagaaggcggctgggggcctggactcctgggtctgag------------------------------------ggaggaggggctgggggcctggactcctgggt
i ponAbe2.chr19                 I 3 C 0
s nomLeu3.chr10                 103397208 475 - 106955855 tccggaactgggct---gcgaggggcggggcgcgggccg-agggggcggggatcccgggggcgggACCTATGAGCATCGGTCCTGAGCGCTGTCACAGCTGGGAGTGGTGGTTTCAGGAGCCTGTGGGCGTGGCTGCGT-CCGGGGGCGGG-----------GCCTATGGTTTGTTCGAATGACGTCACACTTGCCGCACCGTATAAGGCGCGACGCAgtt----ctggagt-gaaataggttcgaatcccac--cactgtcaattccagactgtgaccctctgtgtgtctttcaactatatcagcctattctctcatctggaaatgtgtgtt---------taccttcttcatagacttttggggataatttgagaATTTCCATGCCCAGAAACAAGGATTTAGTAGTCTGtgggtacctaagctcctggggtcctgcaggagaaggcggctgggggcctggactcctgggtctgag------------------------------------ggaggaggggccgggagtatggacttctg---
i nomLeu3.chr10                 I 3 C 0
s rheMac3.chr19                  60706176 513 +  64156825 TCCGGAACTGGGCT---GCGAggggcggggcgcgggcgg-agggggcggggATCCCAGGGGCCGGACCTATGAGCA-CGGTCCTGAGCGCTGTCACAGCTGGGAGAAGTGGTTTCAGTAGCCTATGGGCGTGGCTACGT-CAGGGGGCGGG-----------GCCTATGGTTTCTTCGAATGACGTCATACTTGCCGCGCCATGTAAGGCGCGTCACAgct----ctggcgt-gaaacaggttcgaatcccac--cactgtcaattccagactgtgaccctctgtgtgtctttcaaatatatcagcctattccttcatctggaaatgtgtgtt---------taccttcttcatagacttttggggataatttgagaatttccatgcacagAAACAAGGATCTAGTAGCctgcgggtacccaagctcctggggtcctgcgggagaaggcagccaggggcctggactcctgggtccgagggaggaggggccgggggcatggactcctgggtccaaggaggaggggctaggggcctggactcctgggt
i rheMac3.chr19                 I 3619 C 0
s macFas5.chr19                  55863331 477 +  59248254 tccggaactgggct---gcgaggggcggggcgcgggcgg-agggggcgggGATCCCAGGGGCCGGACCTATGAGCA-CGGTCCTGAGCGCTGTCACAGCTGGGAGAAGTGGTTTCAGTAGCCTATGGGCGTGGCTACGT-CAGGGGGCGGG-----------GCCTATGGTTTCTTCGAATGACGTCATACTTGCCGCGCCATGTAAGGCGCGTCACAgct----ctggcgt-gaaacaggttcgaatcccac--cactgtcaattccagactgtgaccctctgtgtgtctttcaaatatatcagcctattccttcatctggaaatgtgtgtt---------taccttcttcatagacttttggggataatttgagaatttccatgcacagAAACAAGGATCTAGTAGCCTGTGGGGACCCAAGCTcctggggtcctgcaggagaaggcagctgggggcctggactcctgggtccgag------------------------------------ggaggaggggctaggggcctggactcctgggt
i macFas5.chr19                 I 3 C 0
s papAnu2.chr19                  47953014 477 +  51301725 tccggaactgggct---gcgaggggcgggccgcgggcgg-agggggcggggatcccaggggcgggACCTATGAGCA-TGGTCCTGAGCGCTGTCACAGCTGGGAGAAGTGGTTTCAGGAGCCTATGGGCGTGGCTACGT-CAGGGGGCGGG-----------GCCTATGGTTTGTTGGGATGACGTCATACTTGCCGCGCCATGTAAGGCGCGACACAGCT----CTGGCGT-GAAACAGGTTCGAATCCCAC--CACTGTCAATTCCAGACTGTGACCCTCTGTGTGTCTTTCAAATATATCAGCCTATTCCTTCATCTGGAAATGTGTGTT---------TACCTTCTTCATAGGCTTTTGGGGATAATTTGAGAATTTCCATGCACAGAAACAAGGATCTAGTAGCCTGCGGGTACCCAAGCTCCTGGGGTCCTGCGGGAGAAGGcagctgggggcctggactcctgggtctgag------------------------------------ggaggaggggctcggggcctggactcctgggt
i papAnu2.chr19                 I 3 C 0
s chlSab2.chr6                   47652823 445 +  50890351 TCCGGAACTGGGCT---GCGAGGGGCGGGGCGCGGGCGG-AGGGGGCGGGGATCCCAGGGGCGGGACCTATGAGCA-CAGTCCTGAGCTCTGTCACAGCTGGGAGAGGTGGTTTCAGGAGCCTATGGGCGTGGCTACGT-CAGGGGGCGGG-----------GCCTATGGTGTGTTCGAATGACGTCATACTTGCCGCGCCATGTAAGGCGCGAcacagct----ctggcgt-gaaacgggttcgaatcccac--cactgtcaattccagactgtgaccctctgtgtgtctttcaaatatatcagcctattccttcatctggaaatgtgtgtt---------taccttcttcatagacttctggggataatatgagaATTTCCACGCACAGAAACAAGGATCTAGTAGCCTGTGGGTACCCAAGCTcctggggtcctgcgggagaaggcagctgggggcctggactcctgggtccaaa--------------------------------------------------------------------
i chlSab2.chr6                  I 3 C 0
s calJac3.chr22_GL285922_random     64332 462 +    138250 TCCGGAAGTGGGCT---GCGAGGGGCGTGGCAAGGGCAG-AGTGGGCGGGGATCCCAAGGGCGAGACCTATGAGCATCGGCCCTGAGCGCAGTCACAGCTGGGAGTGGCGGTTTCAGGAGCATGTGGGCGTGGCCGTGT-CCGAGGGCGGG-----------GCCTACGGTTCGCTCGAACGGCGTCACATTTGCCGCACCGTTTAAGGCGCTCCGCAgct----ctgtagt-gacagaggttcgaatcccac--cactgttaattccagactgcgaccctctgtgtgtctttcaaatatgtcagcctatttcttcatctggaaatgtgtgct---------taccttcttcatagacttttggggataattTGGGAATCTCCATGCTCAGAAACAAGGATCTGGTAGCCTGTGGGTACCCAAGCTTCTgg---------------ggcagctcggatcctggactcct-tgtctgag------------------------------------ggagttgaggactggggcctggactcctgagt
i calJac3.chr22_GL285922_random I 3 C 0
s canFam3.chr1                   20139330 480 - 122678785 TCCGGGCGGAGGCTTCCGAGAGGGGCGGGGCGTGGACTGCCGGGAGCGGG--------------GGCCCACGAggg-cgggcctcggcgccgcggcggccgggccTGG-GATTTCCGTGGCC-GTGGGCGGGGCCGCGCGCTGGAGGCGGGGCAGGGGCCGAGCCTGCGCACTGTTCCAATGACGTCACGTT---CACGCCGCTCCCGGCGTTCGGCAGGTGCGCCTGGGTTAGAGACCTGCTCCGCCGCCACCGCGCTGCGGCTGGCAGGCTGCGCTCCTCTGCGCG--TTTCAGATTTATCAGCCTGTTCCCACCT---GACGTGCGTGCTCGCCAGTAGTACCTTCCTCGTGGACTACAGGAG--AACTTGAGAATTTCGACACTCGGAAGCCAGGACCTAGTGGCCTCGGGATTCCCAAACTCCTGGGGGCCTGAAGGA---GGAAATCAGGGCGTTAGACTCCTGGGTCTGAG------------------------------------GGAGGAGGGCCTGGGGGCCTGGACTCCtggat
i canFam3.chr1                  C 0 I 2211

a score=419472.000000
s hg38.chr19_GL949751v2_alt        982009 187 +   1002683 ccaagggaggaggggctgggagcatggacttctgggtccgagggaggag-ggccgggtgcctggactgctgagtctgagggaggaggggctgggggcctgATTCATTCCCAAATTATCAGAATCTCATCCCCATGTCTGGCCCTGCACAGAGATATCTTCCCTGAACTCTGCCTGAACTACCTTTCTT
s panTro4.chr19                  59976916 117 +  63644993 -----------------------------------------------------------------------agtctgagggaggaggggctgggggcctgATTCATTCCCAAATTATCAGAATCTCATCCCCATGTCTGGGCCTGCACAGAGATATCTTCCCTGAACTCTGCCTGAACTACCTTTCTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56929293 187 +  60714840 ccaagggaggaggggccaggagcatggacttctgggtccgagggaggag-gggcgggtgcctggactcctgagtctgagggaggaggggctgggggcctgATTCATTCCCAAATTATCAGAATCTCATCCCCATGTCTGGGCCTTTACAGAGATATCTTCCCTGAACTCTGCCTGAACTACCTTTCTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103397683 153 - 106955855 ----------------------------------ggtccgacagatgag-gggtgggtgcctggactcctgagtcttagggaggaggggctgggggcctgATTCATTCCCAAATTATCAGAATCTCATCCCCATGTATGGGCCTGCACACAGATATCTTCTGTGAACTCTGCCTGAACTACCTTTCTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60706689 186 +  64156825 ccaagggaggaggggccgggggcatggacttctaggtcccagggaggag-ggacaagtgcctggactcctgactcagagggaggaggggctggtggcct-ATTCATTTCCAAATTCTCAGAATCTCATCCCCATGTCTGGCTCTGCACAGAGATCTCTCCCCTGAACTCTGCCGGAACTACCTTTCTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55863808 186 +  59248254 ccaagggaggaggggccgggagcatggacttctaggtcccagggaggag-ggacaagtgcctggactcctgactcagagggaggaggggctggtggcct-ATTCATTTCCAAATTCTCAGAATCTCATCCCCATGTCTGGCTCTGCACAGAGATCTCTCCCCTGAACTCTGCCGGAACTACCTTTCTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47953491 187 +  51301725 ccaAGGGAGGAGGGGCCGGGGACATGGACTTCTAGGTCCCAGGGAGGAG-GGACAGGGGCCTGGACTCCtaggtctgagggaggaggggctggtggCCTGATTGATTTCCAAATTCTCAGAATCTCATCCCTATGTCTGGCTCTGCACAGAGATGCCTTCCCTGAACTCTGCCGGAACTACCTTTCTT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47653268 182 +  50890351 -----ggaggaggggccgggggcatggacttctaggtcccagggagaag-ggacaggggcctggactcctgggtctgagggaggaggggctggtggcctgATTGATTTCCAAATTCTCAGAATCTCATCCCTATGTCTGGCTCTGCACAGAGATATCTTCCCTGAACTCTGCCGGAACTACCTTTCTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     64794 187 +    138250 ctgaaggaagaggagctgaggtcctggacttctgggtccaagggaggagaggccaggtgtcaggactcctgggcctgagggaggagaggctgagggcccgATTCATTCCCACATTCTCAGAATCTCATCCCAATGTCTGAGCCTGTACAGAGACGTCTTCC-TGAACTCTGCCTAAACtttttttttt
i calJac3.chr22_GL285922_random C 0 I 306
e canFam3.chr1                   20139810 2211 - 122678785 I

a score=10444.000000
s hg38.chr19_GL949751v2_alt        982196 4 +   1002683 AGAT
s panTro4.chr19                  59977033 4 +  63644993 AGAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56929480 4 +  60714840 AGAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103397836 4 - 106955855 AGAT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60706875 4 +  64156825 AGAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55863994 4 +  59248254 AGAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47953678 4 +  51301725 AGAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47653450 4 +  50890351 AGAT
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     64981 306 +    138250 I

a score=826360.000000
s hg38.chr19_GL949751v2_alt        982200 290 +   1002683 TGAGTATTGCACACACTCCTGCACTTACCTGTCCATGTTTGTCA---CCCCCACCAAACCGGGATGCACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCACAGCGAGTGTATCTGATCACCACCTCCTACCCCTGACTGTGCCTGAGGTGCCAGGAGCAGACACC-GCTGGAAACAGGGAAGAATTCAACCCAA-----TCTAACTAGGAGTAAGTTTTCTTCCTCATCAGATGAACTGTCATCTTCTTATATGAGCCCTGCCATAATGGAGATTATACAGGCAGGAAGAGCTATTTT
s panTro4.chr19                  59977037 290 +  63644993 TGAGTATTGCACACACTCCTGCACTTACCTGTCCATGTTTGTCA---CCCCCACCAAACCGGGATGCACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCACAGTGAGCGTATCTGATCACCACCTCCTACCCCTGACAGTGCCTGAGGTGCCAGGAGCAGACACC-GCTGGAAACAGGGAAGAATTCAACCCAA-----TCTAACTAGGAGTAAGTTTTCTTCCCCATCAGATGAACTGTCATCTTCTTATATGAGCCCTGCCATAATGGAGATTATACAGGCAGAAGCAGCTATTTT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56929484 295 +  60714840 TGAGTATTGCACACACTCCTGCACTTACCTGTCCATGTTAGTCA---CCCCCACCAAACCGAGATGCACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCACAGCCAGCATATCTGATCACCACCTCCTACCCCTGACAGTGCCTGAGGTGCCAGGAGCAGACACC-GTTGGAAACAGGGAAGAATTCAACCCAAGTCACTCTAACTAGGAGTAAGTTTTCTTCCCCATCAGATGAACTGTCATCTTCTTATATGAGCCCTGCCATAATGCAGATTACACAGGCAGGAAGAGCTATTTT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103397840 281 - 106955855 TGAGTATTGCACACACTCCTGCACTCACCTGTCCATGTTTGTCA---CCCCCACCAAACCGGGATGCACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCACAGCGAGCATATCTGATCACCACCTCCTACCCCTGACAGTGCCTGAGGTGCCAGGAGCAGACACC-GCTGGAAACAGGGAAGAATTCAACTTAG--------------GAGTAAGTTTTCTTCCCCATCAGATGAACTGTCATCTTCTTATATGAGCCCTGCCATAATGGAGATTACACAGGCAGGAAGAGCTATTTT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60706879 295 +  64156825 TGAGTATTGCAGACACTCCTGCACTTACCTGTCCATGTTTATCA---CCCCCACCAAACTGGGATGCACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCAGAGCGAGCATATCTGATTACCACCTCCTACCCCTGACAGTGCCTGAGACTCCATGAGCAGACACT-GCTGGGAACAGGGAAGAATTCAATCCAAGTCACTCTAACTAGGAGTAAGTTTTCTTCCGCATCAGATGAACTGTCATCTTCTTATATGAGTCCTGCCATAATGGAGATTACACAGACAGGAAGAGCTATTTT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55863998 295 +  59248254 TGAGTATTGCAGACACTCCTACACTTACCTGTCCATGTTTATCA---CCCCCACCAAACTGGGATGCACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCAGAGCGAGCATATCTGATTACCACCTCCTACCCCTGACAGTGCCTGAGACTCCATGAGCAGACACT-GCTGGGAACAGGGAAGAATTCAATCCAAGTCACTCTAACTAGGAGTAAGTTTTCTTCCATATCAGATGAACTGTCATCTTCTTATATGAGTCCTGCCATAATGGAGATTACACAGACAGGAAGAGCTATTTT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47953682 274 +  51301725 TGAGTATTGCAGACAGTCCTGCACTTACCTGTCCATGTTTATCA---CCCCCACCAAACTGGAATG-------------CTGCTTCCCCTTGCACTGCTCAGA--GAGCATATCTGAT---CACCTCCTACCCCTGACAGTGCCTGAGACTCCAGAAGCAGACACCGGCTGGGAACAGGGAAGAATTCAATCCAAGTCACT----CTAGGAGTAAGTTTTCTTCCGCATCAGATGAACTGTCATCTTCTTATGTGAGTCCCGCCATAATGGAGATTACACAGACAGgaagagctatttt
i papAnu2.chr19                 C 0 I 954
s chlSab2.chr6                   47653454 294 +  50890351 TGAGTATTGCAGACACTCCTGCACTTACCTGTCCATGTTTATCA---CCCCCACCAAACTGGGATACACCTCTGGGCACCTGCTTCCCCTTGCACTGCTCAGAGCGAGCATATCTGATCACCACCTCCTACCCCTGACAGTGCCTGAGACTCCAGGAGGAGACACC-GCTGGGAACAGGGAAGAATTCAA-CCAAGTCACTCTAACTAGGAGAAAGTTTTCTTCCGCATCAGATGAAGTGTCATCTTCTTATGAGAGTCCTGCCATAATGGAGATTACACAGGCAGGAAGAGCTATTTT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     65287 296 +    138250 TGAGTATCGCAGACACTCCCGCACTTACCTGTCCATGTTTGTTACCCCCCCCCCCAAACCGGGATGCACCTCTGGGCACCTGCTTTCCCTTGCACTGCTCAGAGCAAGCATATTTGATCACCACCTCCTACCCCTGACAGTGTCTGAGGCCCCAGAAGCAGATGCC-GCTGGAAAC--GGAAGAATTCGACCCAAGTCGCTCTGACCAGGAGTAAGTTTTCTTCCCCCTCATATGAACTGTCATCTTCTTACAGGAGTCCTGCCATAATGGAGATTACTCAGGCAGAAAGAGCTATTTT
i calJac3.chr22_GL285922_random I 306 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I

a score=31836.000000
s hg38.chr19_GL949751v2_alt        982490 12 +   1002683 AAGACCTTAGTC
s panTro4.chr19                  59977327 12 +  63644993 AAGACCTTAGTC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56929779 12 +  60714840 AAGACCTTAGTC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103398121 12 - 106955855 AAGACCTTAGTC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60707174 12 +  64156825 AAGACCTTAGTC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55864293 12 +  59248254 AAGACCTTAGTC
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47653748 12 +  50890351 AAGACCTTAGTC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     65583 12 +    138250 AAGACCTTAGTC
i calJac3.chr22_GL285922_random C 0 I 195
e canFam3.chr1                   20139810 2211 - 122678785 I
e papAnu2.chr19                  47953956 954 +  51301725 I

a score=238373.000000
s hg38.chr19_GL949751v2_alt        982502 147 +   1002683 AATggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgagacagatggatcacgaggtcaggagattgataccagcctggccaacatggtgaaaccctgtctctactaaaaatac--aaaaattagctggatgtg
s panTro4.chr19                  59977339 147 +  63644993 CATggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgagacagatggatcacgaggtcaggagatcgataccagcctggccaacatggtgaaaccctgtctctactaaaaatac--aaaaattagctggatgtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56929791 147 +  60714840 CATggccgggcatggtggctcacacctgtaatcccagcactttgggaggccgagacagatggatcacgaggtcaggagatcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatac--aaaaattagctggatgtg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103398133 137 - 106955855 CATggccgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggaggatcacgaggtcaggagatcgagac------------cacagtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgtg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60707186 147 +  64156825 CATggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggtggaggtggacggatcacgaggtcaggagatcgagaccatcctagccaacatggtgaaaccctgtctctactaaaaatac--aaaaattagccggttgtg
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55864305 147 +  59248254 CATggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggtggaggtggacggatcacgaggtcaggagatcgagaccatcctagccaacatggtgaaaccctgtctctactaaaaatac--aaaaattagccggttgtg
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47653760 145 +  50890351 CATggccggatatggtggttcacacctgtaatcgcagcac-ttgggaggcggaggtggacggatcacgaggtcaggagattgagaccat-ctggccaacatggtgaaaccctgtctttactaaatatac--aaaaattagccggttgtg
i chlSab2.chr6                  C 0 I 316
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e papAnu2.chr19                  47953956 954 +  51301725 I

a score=214506.000000
s hg38.chr19_GL949751v2_alt        982649 146 +   1002683 gtggcactcacctgtagtcccagctactcag-gaggccgaagcaggagcatcacttgaactcgggaggtggaggttgcagtgagccgagattgccctactgcattccagcct-ggcgacagagtgaaattctgtcaaaaaa--------------------------aa-----aaaaa---------------------------------------
s panTro4.chr19                  59977486 146 +  63644993 gtggcactcacctgtagtcccagctactcag-gaggctgaagcaggagcatcacttgaactcgggaggtggaggttgcagtgagccgagattgccctactgcattccagcct-ggcgacagagtgaaattctgtcaaaaaa--------------------------aa-----aaaaa---------------------------------------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56929938 172 +  60714840 gtggtgctcacctgtagtcccagctactcag-gaggctgaagcaggagaatcacttgaactcacgaggtggaggttgcagtgagctgagattgccctactgcattccagcct-ggcgacagagtgaaattgtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCAA-----AAAAA---------------------------------------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103398270 148 - 106955855 gtggcgggcacctgtggtcccagctactcggagaggctgaggcaggagaatggcgggaacccaggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaa--------------------------aa-----ataaa---------------------------------------
i nomLeu3.chr10                 C 0 I 25
s rheMac3.chr19                  60707333 169 +  64156825 gtggcgctcccctgtagtccccgctattcag-gaggctgaggcaggagaatcacttgaactcgggaggcaggggttgaagtgagccgagatcgccctactgcattccagcct-ggcgacagagtgaaactctgtcaaaaaa--------------------------aa-----aaaaaagacaa----aa------------aaacaaaaCAAAACA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55864452 173 +  59248254 gtgacgctcacctgtagtcccagctattcag-gaggctgaggcaggagaatcacttgaactcgggaggcagaggttgcagtgagccgagatcgccctactgcattccagcct-ggcgacagagtgaaactctgtcaaaaaa--------------------------aa-----aaaaaaaaaaaagacaa------------aaaaaaaaaaaaaCA
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47654221 190 +  50890351 gtggcgctcacctgtagtcccagctattcag-gaggctgaggcaggagaatcacttgaactcgggaggcagaggttgcagtgagccgagatcgccctactgcgttccagcct-ggcgacagagtgaaactctgtcaaaaaa--------------------------aaaacccaaaaaaaacaaacacaaacaaaaacaaacaaacaaaaaaaaaca
i chlSab2.chr6                  I 316 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e papAnu2.chr19                  47953956 954 +  51301725 I

a score=54224.000000
s hg38.chr19_GL949751v2_alt        982795 40 +   1002683 CCTTAGGCCTGTAGACCTTAAGCTCTCACCATCTCAAACG
s panTro4.chr19                  59977632 40 +  63644993 CCTTAGGCCTGTAGACCTTAAGCTCTCACCATCTCAAACG
i panTro4.chr19                 C 0 I 760
s ponAbe2.chr19                  56930110 40 +  60714840 CCTTAGTCCTGtaaaccttaagctctcaccatctcaaatg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60707502 40 +  64156825 CCTTAGTCCTGTAGACCTTAAGCTCTCACCATCTCAAACG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55864625 40 +  59248254 CCTTAGTCCTGTAGACCTTAAGCTCTcaccatctcaaacg
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47654411 40 +  50890351 cCTTAGTCCTGTAGACCTTAAGCTCTCACCATCTCAAACG
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e papAnu2.chr19                  47953956 954 +  51301725 I

a score=32439.000000
s hg38.chr19_GL949751v2_alt        982835 36 +   1002683 TATtaaaccagttacacaatgccaaatgctgtataa
s ponAbe2.chr19                  56930150 36 +  60714840 tattaaaccagttacacaatgccaaatgctgtataa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60707542 36 +  64156825 TATTAAACCAGTTACACAATGACAAATGCTGTATAA
i rheMac3.chr19                 C 0 I 669
s macFas5.chr19                  55864665 36 +  59248254 tattaaaccagttacacaatgacaaatgctgtataa
i macFas5.chr19                 C 0 I 12
s chlSab2.chr6                   47654451 36 +  50890351 TATtaaaccagttacacaatgacaaatgctgtataa
i chlSab2.chr6                  C 0 I 12
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e papAnu2.chr19                  47953956 954 +  51301725 I
e panTro4.chr19                  59977672 760 +  63644993 I

a score=44231.000000
s hg38.chr19_GL949751v2_alt        982871 91 +   1002683 gaggcacttggaggagtcaaattcatagagacagaaaac-agagtggtggctgcagggggctg---gagatgagattgggaagtcacaggatttg
s ponAbe2.chr19                  56930186 95 +  60714840 aaggcacttggagaactcaaattcatagagacagaaaacaaaagtggtggctgcaaggggctgcaagagatgagatggggaagtcacaggatttg
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55864713 95 +  59248254 gaggcacttggaggagtcaaattcatagagacagaaaataagagtggtggctgccaggggctggaggagatgagattgggaagtCGCAGGATTTG
i macFas5.chr19                 I 12 C 0
s chlSab2.chr6                   47654499 94 +  50890351 gaggcacttggaggagtcaaattcatagagacagaaaat-agagtggtggctgccaggggttggaagagatgagattgggaagtcaCAGGATTTG
i chlSab2.chr6                  I 12 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e papAnu2.chr19                  47953956 954 +  51301725 I
e rheMac3.chr19                  60707578 669 +  64156825 I
e panTro4.chr19                  59977672 760 +  63644993 I

a score=2730.000000
s hg38.chr19_GL949751v2_alt        982962 5 +   1002683 ttttt
s ponAbe2.chr19                  56930281 5 +  60714840 ttttt
i ponAbe2.chr19                 C 0 C 0
s papAnu2.chr19                  47954910 5 +  51301725 ttttt
i papAnu2.chr19                 I 954 C 0
s chlSab2.chr6                   47654593 5 +  50890351 TTTtt
i chlSab2.chr6                  C 0 I 694
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e macFas5.chr19                  55864808 0 +  59248254 C
e rheMac3.chr19                  60707578 669 +  64156825 I
e panTro4.chr19                  59977672 760 +  63644993 I

a score=3678.000000
s hg38.chr19_GL949751v2_alt        982967 18 +   1002683 g-tttgtttgtttgttttg
s ponAbe2.chr19                  56930286 17 +  60714840 --tgttttgttttgttttg
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55864808 17 +  59248254 --tttcttgttttgttttg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47954915 19 +  51301725 gtttgtttgttttttgttt
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e chlSab2.chr6                   47654598 694 +  50890351 I
e rheMac3.chr19                  60707578 669 +  64156825 I
e panTro4.chr19                  59977672 760 +  63644993 I

a score=4730.000000
s hg38.chr19_GL949751v2_alt        982985 6 +   1002683 ttttgt
s ponAbe2.chr19                  56930303 6 +  60714840 ttttgt
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55864825 6 +  59248254 ttttgt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47954934 6 +  51301725 gtttgt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655292 6 +  50890351 ttttgt
i chlSab2.chr6                  I 694 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e rheMac3.chr19                  60707578 669 +  64156825 I
e panTro4.chr19                  59977672 760 +  63644993 I

a score=222802.000000
s hg38.chr19_GL949751v2_alt        982991 219 +   1002683 tttttgagagac--agtctcactgtgtcacccaggctggagagcagtgg-gcgatctcagctcactgcaacctctgcctcctaggttcaagcgattctcctgcctcagcctcccgagtagctggggctacaggcacgtgtcaccacacccggctaa-tttttgta-tttttagtagagacggggtttcaccatgttggccaggttggtctcaaactcctgacct
s panTro4.chr19                  59978432 220 +  63644993 tttttgagacgc--agtcttactctgtcgcccaggctggagcgcagtggcgtgatcttggctcacctcaacctctgcctcccgaattcaagcctttctcctgcctcagcctcccgagttgctgggattacaggtgcccgccaccaagcccaggtaa-tgtttgta-tttttagtagagacgaggtttcaccatgttggccaggctggtctccagctcctgtcct
i panTro4.chr19                 I 760 C 0
s ponAbe2.chr19                  56930309 221 +  60714840 tttTTGAgagacaaagtctcactgcgtcacccaggctggagagcagtgg-gcgatctcagctcactgcaaccttagcctcctgggttcgagcaattctcctgcctcagcctcctgagtagctggggctacaggcacgtgccaccacacctggctaa-tttttgca-tttttagtagagatggtgtttcaccatgttggccagattggactcaaactcctgacct
i ponAbe2.chr19                 C 0 I 308
s macFas5.chr19                  55864831 222 +  59248254 tttttgagagacagagtctcactgcgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgccccctgggttcaagcaattctcctgcctcagcctcccgagtagctggggctacaggcgtgcaccaccacacccagctaa-tttttgta-tttttagtagagatggggtttcaccatgttggccaggatggtctcaaactcctgacct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47954940 223 +  51301725 tttttt-gagacagagtctcgctctgtcgcccaggctggagtgcagtggccagatctcagctcactggaagctccatctccggggtttacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccttgtccggctagttttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655298 222 +  50890351 ttttt--gagacagagtctcgctctgtcgcccaggctagtgtgcagtggccggatctcagctcactgtaagctccgcctctggggtttacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccacctcgccccgctagttttttgtattttttagcagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacct
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418  25 - 106955855 I
e rheMac3.chr19                  60707578 669 +  64156825 I

a score=-4367.000000
s hg38.chr19_GL949751v2_alt        983210 3 +   1002683 c--ag
s panTro4.chr19                  59978652 3 +  63644993 c--ag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56930838 3 +  60714840 c--ag
i ponAbe2.chr19                 I 308 C 0
s macFas5.chr19                  55865053 3 +  59248254 cag--
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47955163 1 +  51301725 c----
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655520 1 +  50890351 c----
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e rheMac3.chr19                  60707578 669 +  64156825 I

a score=19507.000000
s hg38.chr19_GL949751v2_alt        983213 11 +   1002683 gtgatccacct
s panTro4.chr19                  59978655 11 +  63644993 gtgatccacct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56930841 11 +  60714840 gtgatccacct
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60708247 11 +  64156825 gtgatccgcct
i rheMac3.chr19                 I 669 C 0
s macFas5.chr19                  55865056 11 +  59248254 gtgatccacct
i macFas5.chr19                 C 0 I 663
s papAnu2.chr19                  47955164 11 +  51301725 gtgatccgccc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655521 11 +  50890351 gtgatccgccc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I

a score=122083.000000
s hg38.chr19_GL949751v2_alt        983224 72 +   1002683 gcctcggccacccaaagtgctgggattacaggcatgagccaccgcacccggcc--gggaagctg-ttttttaata
s panTro4.chr19                  59978666 72 +  63644993 gcctcggccacccaaagtgctgggattacaggcatgagccaccgcacccggcc--aggaagctg-ttttttaata
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56930852 72 +  60714840 gcctcggccacccaaagtgctgggattacaggcatgagccaccgcacctggcc--gggaagctg-ttttttaata
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60708258 74 +  64156825 gtctcggcctcccaaagtgctgggattacaggcttcagctaccgcgcccggccGGgggaggctg-ttttttaata
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55865730 74 +  59248254 gtctcggcctcccaaagtgctgggattacaggcttgagctaccgcgcccggccGGgggaggctg-ttttttaata
i macFas5.chr19                 I 663 C 0
s papAnu2.chr19                  47955175 74 +  51301725 gtctcggcctcccaaagtgctgggattacaggcttgagccactgcacccggccaggggAGGCTG-ttttttaata
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655532 75 +  50890351 gtctcggcctcccaaagtgctgggattacaggcttgagtcaccgcgcccggccgggggaggctgtttttttaaca
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20139810 2211 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I

a score=86139.000000
s hg38.chr19_GL949751v2_alt        983296 43 +   1002683 gatacagagttt--gttttgcaaaat-aaaaaaaagacctgaaggt
s panTro4.chr19                  59978738 42 +  63644993 gatacagagttt--gttttgcaaaat-aaaaaaa-gacctgaaggt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56930924 42 +  60714840 gatacagagttt--gttttgcaaaat-aaaaaaa-gacctgaaggt
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60708332 44 +  64156825 gatacagagttt--gttttgcaaaataaaaaaaaagacctgaaggt
i rheMac3.chr19                 C 0 I 12
s macFas5.chr19                  55865804 43 +  59248254 gatacagagttt--gttttgcaaaat-aaaaaaaagacctgaaggt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47955249 43 +  51301725 gatacagagttt--gttttgcaaaat-aaataaaagacctgAAGGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655607 43 +  50890351 gatacagagttt--gttttgcaaaat-aaaaaaaagacctgaaggt
i chlSab2.chr6                  C 0 I 12
s canFam3.chr1                   20142021 44 - 122678785 ggcacagaatttcagttttgcaagat-gaaaaga-gctctggacat
i canFam3.chr1                  I 2211 C 0
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I

a score=6938.000000
s hg38.chr19_GL949751v2_alt        983339 11 +   1002683 ggacggtggtg
s panTro4.chr19                  59978780 11 +  63644993 ggacggtggtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56930966 11 +  60714840 ggacggtggtg
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55865847  8 +  59248254 ---cttttgtg
i macFas5.chr19                 C 0 I 4
s papAnu2.chr19                  47955292  8 +  51301725 ---CTTTTGTG
i papAnu2.chr19                 C 0 I 4
s canFam3.chr1                   20142065 11 - 122678785 ggatggtggtg
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I
e chlSab2.chr6                   47655650 12 +  50890351 I
e rheMac3.chr19                  60708376 12 +  64156825 I

a score=318409.000000
s hg38.chr19_GL949751v2_alt        983350 173 +   1002683 atggttgcacaacaatgtgaatatacttaacatcactgaattgtacac-ttaaaatggttaagatggtacattttactttatgcatagtttacca-aactaaaaaTAAAGAAAAATTTTAgactgggcatggtggctcatgcctgtaatcccagcactttgggaggccaaagtgg
s panTro4.chr19                  59978791 173 +  63644993 atggttgcacaacaatgtgaatatacttaacatcactgaattgtatac-ttaaaatggttaagatggtacattttactttatgcatattttacca-aactaaaaaTAAAGAAAAATTTTAgactgggcatggtggctcatgcctgtaatcccagcactttgggaggccaaagtgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56930977 174 +  60714840 atggttgcacaacaatgtgaatatacttaacattactgaactgtacac-ttaaaatggttaagatggtaaattttactttatgcatattttaccacaactaaaaaTAAAGAAAAATTTTAggctgggcatggtggctcatgcctgtaatcccagcactttgggaggccacagtgg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60708388 163 +  64156825 atggttgcacaacaatgtgaatatactcaacactactgaattgcacgc-ttaaaatggttaagatggtaaattttactttatgcatattttaccacaactaaaaGT----AAAAATTTTAggctgggcatggtgg-------cagtaatcccagcactttcggaggccaaagtgg
i rheMac3.chr19                 I 12 C 0
s macFas5.chr19                  55865859 163 +  59248254 atggttgcacaacaatgtgaatatactcaacactactgaattgcacgc-ttaaaatggttaagatggtaaattttactttatgcatattttaccacaactaaaaGT----AAAAATTTTAggctgggcatggtgg-------cagtaatcccagcactttcggaggccaaagtgg
i macFas5.chr19                 I 4 C 0
s papAnu2.chr19                  47955304 163 +  51301725 atggttgcacaacaatgtgaatatactcaacactactgaattgcacac-ttaaaatggttaagatggtaaattttactttatgcatattttaccacaactaaaagt----aaaaattttaggctgggcatggtgg-------cagtaatcccagcactttcggaggccaaagtGG
i papAnu2.chr19                 I 4 C 0
s chlSab2.chr6                   47655662 163 +  50890351 atggttgcacaacaatgtgaatatactcaacgctactgaagtgcacac-ttaaaatggttaagatggtaaattttactttatgcatattttaccacaactaaaaGT----AAAAATTTTAggctgggcacggtgg-------cagtaatcccagcactttcggaggccaaagtgg
i chlSab2.chr6                  I 12 C 0
s canFam3.chr1                   20142076 131 - 122678785 ttagttgcacaacagtgtgaatgtgcttaatgccactgaactgtacactttaaaatgattaagagagtaaattttatgtcttgtgcattttaccataattaaaaaT----AAAGA-------------AGGATgg---------------------------gacgcctgggtgg
i canFam3.chr1                  C 0 I 157
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418  25 - 106955855 I

a score=367728.000000
s hg38.chr19_GL949751v2_alt        983523 199 +   1002683 agaatagtatgagcccaggagtttgagagcggcctggacaacacggcaaaaccttatctctacaaaaaa-tacaaaaattagcaggtttggtggcacgcatctgcaccctcagctacttgggaggctgaggtgggaggtctgcttgagcccaggaggtcaaggctatgatgagctgtgattgtgccactgcaccccaggc
s panTro4.chr19                  59978964 200 +  63644993 agaacagtatgagcccaggagtttgagagcggcctggacaacacggcaaaaccttatctctacaaaaaaatacaaaaattagcaggtttggtggcacgcatctgcaccctcagctacttgggaggctgaggtgggaggtttgcttgagcccaggaggtcaaggctatgatgagccgtgattgcgccactgcaccccaggc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56931151 199 +  60714840 agaacagtatgagcccaggagtttgagagcggcctggacaacaccgcaaaaccttatctctacaaaaaa-tacaaaaattagcaggtttggtggcacgcatctgcagcctcagctacttgggaggctgaggtgggaggtttgcttgagcccaggaggtcgaggctatgatgagccgtgattgtgccactgcaccccagcc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60708551 199 +  64156825 agaatagcatgagcccagaagtttgagaccagcctggacaacacggcaaaaccttatctctacaaaaaa-tacaaaaattagcaggcttggtggcatgcatctgcggcctcagctacttgggaggctgaggtgggaggattgcttgagcccaggaggtcaaggctatgatgagccgtgattgcgccactgcaccccagcc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866022 199 +  59248254 agaatagcatgagcccagaagtttgagaccagcctggacaacacggcaaaaccttatctctacaaaaaa-tacaaaaattagcaggcttggtggcatgcatctgcggcctcagctacttgggaggctgaggtgggaggattgcttgagcccaggaggtcaaggctatgatgagccgtgattgtgccactgcaccccagcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47955467 199 +  51301725 AGAATAgcatgagcccagaagtttgagaccagcctggacaacatggcaaaaccttatctctacaaaaaa-aacaaaaattagcaggcttggtggcatgcatctgcggcctcagctacttgggaggctgaggtgggaggattgcttgagcccaggaggtcaaggctatgatgagctgtgattgtgccactgcaccccagcc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47655825 199 +  50890351 agaatagcatgagcccagaagtttgagaccagcctggacaacacggcaaaaccttatctctacaaaaaa-tacaaaaattagcagacttggtggcatgcatctgcggcctcagctacttgggaggctgaggtgggaggattgcttgagcccaggaggtgaaggctatgatgagccgtgattgtgccactgcaccccagcc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20142207 157 - 122678785 I
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418  25 - 106955855 I

a score=38479.000000
s hg38.chr19_GL949751v2_alt        983722 31 +   1002683 tgggtgacagagcaagaccc---catctcaaaaa
s panTro4.chr19                  59979164 31 +  63644993 tgggtgacagagcaagaccc---catctcaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56931350 31 +  60714840 tgggtgacagagcaagactc---cgtctcaaaaa
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60708750 29 +  64156825 tgggtgacacagcaagaccc---tgtctcaaa--
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866221 29 +  59248254 tgggtgacacagcaagaccc---tgtctcaaa--
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47955666 29 +  51301725 tggatgacacagcaagaccc---tgtctcaaa--
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656024 29 +  50890351 tgggtgacagagccagaccc---tgtctcaaa--
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20142364 31 - 122678785 taaataatatataaaaatataaataaataaa---
i canFam3.chr1                  I 157 C 0
e calJac3.chr22_GL285922_random     65595 195 +    138250 I
e nomLeu3.chr10                 103398418 25 - 106955855 I

a score=642346.000000
s hg38.chr19_GL949751v2_alt        983753 273 +   1002683 taataataataa---------aTGTTTACATTTAAT----AACATGGGCA--ATTGGTTCAGATGTTCATTTTCTCAACCTTG-----AAAAAAAAA----------CAACACTGTTTTTCCC--TGTCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCATTGACTTCCAGGAcagagatc----------------------------------agcaaac-tttttctacaaacagccagatagtaaataatttcagctttgtgatccacacagtggctgttgcacctcctctgccagaggagctgggaagcagccacagatgatgtgaaaa
s panTro4.chr19                  59979195 273 +  63644993 taataataataa---------aTGTTTAAATTTAAT----AACATGGGCA--ATTGGTTCAGATGTTCATTTTCTCAACCTTG-----AAAAAAAAA----------CAACACTGTTTTTCTC--TGTCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCATTGACTTCCAGGAcagagatc----------------------------------agcaaac-tttttctacaaacagccagagagtaaataatttcagctttgtgacccacacagtggctgttgcacctcctctgccagaggagctgggaagcagccacagatgatgtgaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56931381 280 +  60714840 taataataataa---------aTGTTTAAATTTAAT----AACATGGGCA--ATTGGTTCAGATGTTCATTTTCTCAATCTTGGAAAAAAAAAAAAA----------AAACACTGTTTTTCTCTATGTCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCATTGACTTCCAGGAcagagatc----------------------------------agcaaac-tttttctacaaacagccagatagtaaataatttcagctttgtgacccacacagtgcctgttgcacctactctgccataggagctgggaagcagccatagatgatatgaaaa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103398443 272 - 106955855 taataataataa---------ATGTTTAAATTTAAT----AACATGGACA--ATTGGTTCAGATGTTCATTTTCTCAACCTTG-----AAAAAAA-------------AACACTGTTTTTCTCTATGTCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCATTGACCTCCACGAcagggatt----------------------------------agcaaac-tttttctacaaacagtcagatagtaaataatttcagccttgtgacccacacagtggctgctgcacctactctgccacaggagctgggacgcagccatagatggtatgataa
i nomLeu3.chr10                 I 25 I 1994
s rheMac3.chr19                  60708779 272 +  64156825 -aataataaTGA---------ATGTTTACATTTAAT----AACACGGGCA--ATTGGTTCAGATGCTCATTTTCTCAACCTTG---AAAAAAAAAAA--------------ACTGTTTTTCTCTATATCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCACTGACCTCCAGGAcaggtatc----------------------------------agcaaac-tttttctacgaacagccagatagtaaataatttcagacttgtgacccatacagtggctcttgcacctcctctgccatagtaactgggaagcagtcatagatgatatgaaaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866250 270 +  59248254 -aataataataa---------aTGTTTAAATTTAAT----AACACGGGCA--ATTGGTTCAGATGCTCATTTTCTCAACCTTG-----AAAAAAAAA--------------ACTGTTTTTCTCTATATCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCACTGACCTCCAGGAcaggtatc----------------------------------agcaaac-tttttctacgaacagccagatagtaaataatttcagacttgtgacccatacagtggctcttgcacctcctctgccatagtaactgggaagcagtcatagatgatatgaaaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47955695 270 +  51301725 -aataataataa---------atgtttaaatttaat----aaCACGGGCA--ATTGGTTCAGATGCTCATTTTCtcaaccttg------aaaaaaaa--------------actgtttttctctatatctttttctccttttctgtaaaCTGAAATCCTAATATCACTGACCTCCAGGACAGGTATC----------------------------------AGCAAACTTTTTTCTACGAAcagccagatagtaaataatCTCAGACTTGTGACCCATACAGTGGCTCTTGCACCTCCTCTGCCATAGTAACTGGGAAGCAATCGTAGATGATATGAAAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656053 284 +  50890351 -aataataataa---------aTGTTTAAATTTAAT----AACACGGGCG--ATTGGTTCAGATGCTCATTTTCTCAACCTTG-----AAAAAAAAAATAAATGAATAAACACTGTTTTTCTCTATGTCTTTTTCTCCTTTTCTGTAAACTGAAATCCTAATATCACTGACCTCCAGGAcagggatc----------------------------------agcaaac-tttttctacaaacagccagatagtaaataatttcagacttgtgacccacacagtggccgttgtacctcctctgccatagtaactggggagcagtcatagatgatatgaaaa
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20142395 295 - 122678785 taataaaaataaaGAAGGAGGAGGTCTGAAGAGGAGAGAAAACATGGGCACTGTATATTCAGATTCTGGTCCTCACAGCTTTG-----AATAAAGCA-------------------TTTCCTCTCAGCCTTTGTT--------------------TTCTAATATCATCTACCTCAAGGGTAGGGttttcttttttttttttttttttttttttttttttAAGGGTAGG-Gttttctgcaaaggacaggatagtaaataatttcgtcctcgtgggccatatggtccctactgcaactattctgccattatagcaggaaagccaccatagacaagatgcaca
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     65595 195 +    138250 I

a score=203527.000000
s hg38.chr19_GL949751v2_alt        984026 79 +   1002683 caagtgagca-cagctgtgttcccataaaa--ctttatttat-aaaaataagcagtgcgccacagttcgccagcTCCTGTTTG
s panTro4.chr19                  59979468 79 +  63644993 caagtgagca-cagctgtgttcccataaaa--ctttatttac-aaaaataagcagtgCCCCACAGTTCGCCAGCTCCTGTTTG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56931661 79 +  60714840 caagtgagca-tagctgtgttcccataaca--ctttatttac-aaaaataagctgtgggccacagtttgccagcTCCTGTTTG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103400709 80 - 106955855 caagtgagca-tagctgtgttcccataaaaacttttatttac-aaaaataagcagtgggccACAGTTTACCAGCTCC-ATTTG
i nomLeu3.chr10                 I 1994 C 0
s rheMac3.chr19                  60709051 78 +  64156825 caagtgagca-tagctgtgtt-ccataaaa--ctttattttc-aaaaacaagcagtgggccATAGTCTGCCAGCTCCTGTTTG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866520 78 +  59248254 caagtgagca-tagctgtgtt-ccataaaa--ctttattttc-aaaaacaagcagtgggccATAGTCTGCCAGCTCCTGTTTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47955965 79 +  51301725 CAAGTGAGCA-TAGCTGTGttcccataaaa--ctttattttc-aaaaacaagcagtgggccATAGTCTGCCAGCTCCTgtttg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656337 79 +  50890351 caagtaagca-cagctgtgttcccataaaa--ctttattttc-aaaaataagcagtgggccATAGTCTGCCAGCTCCTGTTTG
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20142690 74 - 122678785 caaatgagcattagctgtgttctaataaaa--ctttatttacaaaaaataagcaatgggccatagtttgccagcTC-------
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     65595 195 +    138250 I

a score=163497.000000
s hg38.chr19_GL949751v2_alt        984105 58 +   1002683 Agagtctctctccgatgcccaggctggagcgcagtgatgcaatctcagctcactgcaa
s panTro4.chr19                  59979547 58 +  63644993 Agagtctgtctccgatgcccaggctggagtgcagtggtgcaatctcagctcactgcaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56931740 58 +  60714840 Agagtctctctccgatgcccaggctggagcgcagtagcgcaatctcagctcactgcaa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103400789 58 - 106955855 Agagtctctctccgatgcccaggctggagcacagtggcgcaatctcagctcactgcaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709129 58 +  64156825 Agagtctcgctccgatgcccaggctggagtacagtgatgcaatctcagctcactgcaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866598 58 +  59248254 Agagtctcgctccgatgcccaggctggagtacagtgacgcaatctcagctcactgcaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956044 58 +  51301725 agagtctcgctctgatgcccaggctggagtacagtgacgcaatctcagctcactgcaa
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656416 58 +  50890351 Agagtctcgctccgatgcccaggctagagtgcagtggtgcaatctcggctcactgcaa
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     65790 58 +    138250 agagtctcgctgtgttgcccaggctggagggcagcagcacaatctcagctcactgcaa
i calJac3.chr22_GL285922_random I 195 C 0
s canFam3.chr1                   20142764  7 - 122678785 ---------------------------------------------------ACTGTAA
i canFam3.chr1                  C 0 C 0

a score=692333.000000
s hg38.chr19_GL949751v2_alt        984163 229 +   1002683 cctctgcctcctgggttcaagcgattctcctgcctcagcctcatgagtagctgggattacaggcgctcgccgccacacctggctgatttttgtatttttagtagagacggggtttcaccatgttggccaggctggttttgaactccaggcttcaggtgatccacctgcctcagcctcccaaagtgctgggattacaaagcgtgagccactgcgcccagcTACCTGTCAT
s panTro4.chr19                  59979605 229 +  63644993 cctctgcctcctgggttcaagcgattctcctgcctcagcctcatgagtagctgggattacaggcgctcgccgccacacctggctgatttttgtatttttagtagagacggggtttcaccatgttggccaggctggttttgaactccaggcttcaggtgatccacctgcctcagcctcccaaagtgctgggattacaaagcgtgagccactgcgcccagcTACCTGTCAT
i panTro4.chr19                 C 0 M 1933
s ponAbe2.chr19                  56931798 229 +  60714840 cctctgcctcctgggttcaagtgattctcctgcctcagcctcatgagtagctgggattacaggcgctcgccaccacacctggctaatttttgtatttttagtagagacagggttttgccatgttggccaggctggtttcgaactccatacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaaagcgtgagccactgcgcccagctACCTGTCAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103400847 229 - 106955855 cctctgcctccggggttcaagcgattctcctgcctcagcctcatgagtagctgggattacaggcgctcgccaccacacctggctaatttttgtatttttagtagagacggggttttgccatgttggccaggccagtttcgaactccagacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaaagtgtgagccaccgcgcccagcTACCTGTCAT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709187 229 +  64156825 cctctgcctcctgggttcaagcgattctcctgcctcagcctcatgagtagctgggattacaggtgctcgccaccacgcctggctaatttttgtatttttagtagagatggggttttgccgtgttggccaggctgggttcgaactccggacctcaggtgatccacctgcctcagcctcccaaagtgctgggattgcaaagtgtgagccaccgcgcccggcTACCTGTCAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866656 229 +  59248254 cctctgcctcctgggttcaagcgattctcctgcctcagcctcatgagtagctgggattacaggtgctcgccaacacgcctggctaatttttgtatttttagtagagacggggttttgccgtgttggccaggctggtttcgaactccggacctcaggtgatccacctgcctcagcctcccaaagtgctgggattgcaaagtgtgagccaccgcgcccggcTACCTGTCAT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956102 229 +  51301725 cctctgcctcttgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgctcgtcaacacgcctggctaatttttgtatttttagtagagatgcggttttgccgtgttggccaggctggtttcgaactccggacctcaggtgatccacctgcctcagcctcccaaagtgctgggattgcaaagtgtgagccaccgcgcccggctacctGTCAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656474 229 +  50890351 cctctgcctcctgggttcaagcgattctcctgtctcagcctcatgagtagctgggattacaggtgctagccaacacgcctggctaatttttgtatttttagtagagacggggttttgccgtgttggccaggctggtttcgaactctggacctcaggtgatccacctgcctcagcctcccaaagtgctgggattgcaaagtgtgagccaccgcgcccggcTACCTGTCAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     65848 226 +    138250 actccacctcccgggttcaagcaattctcctaccttggcctc-tgagtag-tgggattacaggagcacagcaccacacctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacgtcaggtgatccacccacctcagccttccaaagtgctgggattac-aggcgtgagccactgtggccagccCCCTGTCAT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20142771   0 - 122678785 C

a score=5348.000000
s hg38.chr19_GL949751v2_alt        984392 2 +   1002683 TG
s ponAbe2.chr19                  56932027 2 +  60714840 TG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401076 2 - 106955855 TG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709416 2 +  64156825 TG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866885 2 +  59248254 TG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956331 2 +  51301725 TG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656703 2 +  50890351 TG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66074 2 +    138250 TG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20142771 0 - 122678785 C
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=932919.000000
s hg38.chr19_GL949751v2_alt        984394 340 +   1002683 AATTTGGAAGGATGGCATGAAGTCATTCATAACAAGGACTTAATCCATAGTAAGTGCCAGAACATTGCTGGCTGTTAATATGGTTATTATAAAGAGAACAATGCATGCATATTCC-TCCTCTGAGGA---TCTCCTACCTGATTCCCAGACACACCCAAGGGAGTTAGAACATCTGTTTGGACTCCAGGTGGGCTGTCCACGCCTTTACCATTTTCCTGGTTGTTAACATGTTCCTGATCAGCACTGGGTGCTGTCCCAGGTGCTGAGAGGATTCTCCCACAATGCCCTTTGCTTTCCCCATCAGAGGGTTTATGGCACCCAATTCTCATTCACAT----tctgtctc
s ponAbe2.chr19                  56932029 342 +  60714840 AATTTAGAAGGATGGCATGAAGTCATTCAAAACAAGGACTTAATCCATAGTAAGTGCCAGAACATTGCTGGCTGTTAATATGGTGATTATAAAGAGAACAATGCATGCAAATTCC-TCCTCTGAGGA---TCTCCTACCTGATTCCCAGACACACCCAAGGGAGTTAGAACATCTATTTGGACTCCAGGTGGGCTGTCCACCCCTTTACCATTTTCCTGGTTGTTAACAAGTTCCTGATCAGCATTGGGTGCTGTCCCAGGTGCTGAGAGGAGTCTCCCACAATGCCCTTTGCTTTCCCCATCAGAGGGTTTACGGCACCCAATTCTCATTCACAT--tctctctctc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401078 344 - 106955855 AATTTGGAAGGATGGCATGAAGTCATTCATAACAAGGACTTAATCCATAGTAAGTGCCAGAACATTGCTGGCTGTTAATATGGTTATTATAAAGAGAACAATGCATGCAAATTCC-TCCTCTGAGGA---CCTCCTACCTGATTCCCAGACACACCCAAGGGAGTTAGAACATCTATTTGGACTCCGGGTGGGCTGTCCACCCCTTTACCATTTTCCTGGTTGTTATCAAGGTCCTTATCAGCATTGGGTGCTGTCCCAGGTGCTGAGAGGATTCTCCCACAATGCCCTTTGCTTTCCCTATCAGAGGCTTTATGGCACCCAATTCTCATTCACATtctctctctctc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709418 339 +  64156825 AATTTGGAAGGATGACGTGAAGTCATTCATAACAAGGACTTAATCCATAGTAAGTGCCAGAACATTGCTGGCCGTTAGTATGGTTATTATAAAGAGAACAACGCATGCAAATTCC-TCCTCTGAAGA---CCTCCTACCTGATTCCCAGACACACCCAAGAGAGTTAGAACATCTATTTGGACTCCAGGTGGGCTGTGCACCCCTTTACCATTTTCCTGGTTGTT---AAGTTCCTGGTCAGCATCGGGTGCTGTCCCAGGTGCTGAGAGGATTCTCCCACAATGCCCTTTGCTTTCCCCATCAGAGGGTTTATGGCACCCAATTCTCATTCTCAT--tctctctctc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55866887 335 +  59248254 AATTTGGAAGGATGACGTGAAGTCATTCATAACAAGGACTTAATCCATAGTAAGTGCCAGAACATTGCTGGCCGTTAGTATGGTTATTATAAAGAGAACAACGCATGCAAATTCC-TCCTCTGAAGA---CCTCCTACCTGATTCCCAGACACACCCAAGAGAGTTAGAACATCTATTTGGACTCCAGGTGGGCTGTGCACCCCTTTACCATTTTCCTGGTTGTT---AAGTTCCTGGTCAGCATCGGGTGCTGTCCCAGGTGCTGAGAGGATTCTCCCACAATGCCCTTTGCTTTCCCCATCAGAGGGTTTATGGCACCCAATtctcattctcat------tctctc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956333 339 +  51301725 AATTTGGAAGGATGACATGAAGTCGTTCATAACAAGGACTTAATCCATAGTAAGTGCCAGAACATTGCTGGCCGTTAGTATGGTTATTATAAAGAGAACAACGCATGCAAATTCC-TCCTCTGAAGA---CCTCCTACCTGATTCCCAGACACACCCAAGAGAGTTAGAACATCTATTTGGACTCCAGGTGGGCTGTGCACCCCTTTACCATTTTCCTGGTTGTT---AAGTTCCTGGTCAGCATCGGGTGCTGTCCCAGGTGCTGAGAGGATTCTCCCACAATGCCCTTTGCTTTCCCCATCAGAGGGTTTATGGCACCCaattctcattctcat--tctctctctc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47656705 339 +  50890351 AATTTGGAAGGATGACATGAAGTCATTCATAACAAGGACTTACTCCATAGTAAGTACCAGAACATTGCTGGCTGTTAGTATGGTTATTATAAAGAGAACAACACATGCAAATTCC-TCCTCTGAGGA---CCTCCTACCTGATTCCCAGACACACCCAAGAGAGTTAGAACATCTATTTGGACTCCAGGTGGGCTGTGCACCCCTTTACCATTTTCCTGGTTGTT---AAGTTCCTGGTCAGCATTGGGTGCTGTCCCAGGTGCTGAGAGGATTCTCCCACAATGCCCTTTGCTTTCCCCATCAGAGGGTTTATGGCACCCAATtctcattctcat--tctctctctc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66076 340 +    138250 AATTTGGAAGGATGACATGAAGTCATCCATAACAAGGACTTAATCCATAGTAAGTGCCAGATCATTGCTGGCTGTTAACACTGTTATCACAAAGAGAACAATTTGTGCAAATTTG-TCCTCTGAGGACCTCCTCCTACCTGACTCCCAGACACACCCAAGGGAGTTAAAACATCTATTTGGATTCCCCGTGGGCTGTCCACCCCTTCACCATTTTTCTCGTTAAC---AAATTCCTGATCAGCATTAGGTGCTGTCCCGGGTCCTGAAAGGATTCTCCCACAATGCCCTTTGCTTTCCGCATCAGAGGGTTTATGGCACCCAGTTCTCATTCTCAT----TCTCTCTG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20142771 328 - 122678785 AGTCTGGAAGGTTGACATACAGTCATTCACAAGAAGGACCTAA--CACAGTAAGTACCAGAACATTGCTGGCTGCTAAAGTAGTTATTATACAGGAAATAATGTATGCAAATTCCTTTCTCTGAGGA---CCTCCCACCTGGTTCCCAGACACACCCAAGGTGTTAAGAAACTCTCTTTGGACTCCAGGTAGGCTATGCTCCTCTTTATCACTGTTGATGTTCCT---GAATTCTTGATAACCATCGGGTGCTGTCCCAGGTGCTGAGAGACTTCTCCCGCAAAGCCCTCTGCTTTCCCTATCAG-GGGCTTACAGCCCAAAAT---------CAT--TCTCTGTCTC
i canFam3.chr1                  C 0 I 1683
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=39291.000000
s hg38.chr19_GL949751v2_alt        984734 25 +   1002683 tcctttctcgttcttctctatctct
s ponAbe2.chr19                  56932371 25 +  60714840 tcctttctcgttcttctctatctct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401422 24 - 106955855 tcctttctcgttc-tctctctctcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709757 25 +  64156825 tcctttcttgttcttctctaactct
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55867222 25 +  59248254 tcctttcttgttcttctctaactct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956672 25 +  51301725 tcctttcttgttcttctctaactct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657044 25 +  50890351 tcctttcttgttcttttctgactct
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66416 25 +    138250 TATTTGATCACCACCTCCTACCCCT
i calJac3.chr22_GL285922_random C 0 I 78
e canFam3.chr1                   20143099 1683 - 122678785 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=11034.000000
s hg38.chr19_GL949751v2_alt        984759 15 +   1002683 cctctctct-gtctcc-----
s ponAbe2.chr19                  56932396 15 +  60714840 cctctctct-ctctcc-----
i ponAbe2.chr19                 C 0 I 244
s nomLeu3.chr10                 103401446 15 - 106955855 tctctttcc-ctctct-----
i nomLeu3.chr10                 C 0 I 10
s rheMac3.chr19                  60709782 20 +  64156825 cctctctct-ccccccctcct
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55867247 20 +  59248254 cctctctct-ccccccctcct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956697 21 +  51301725 cctctctctcccccccctcct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657069  9 +  50890351 cctctctct------------
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66441 78 +    138250 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=6840.000000
s hg38.chr19_GL949751v2_alt        984774 5 +   1002683 ttttc
s ponAbe2.chr19                  56932655 5 +  60714840 ttttc
i ponAbe2.chr19                 I 244 C 0
s nomLeu3.chr10                 103401471 5 - 106955855 ttttc
i nomLeu3.chr10                 I 10 C 0
s rheMac3.chr19                  60709802 5 +  64156825 ttttc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55867267 5 +  59248254 ttttc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956718 5 +  51301725 ttttc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657078 1 +  50890351 ----c
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66441 78 +    138250 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=33636.000000
s hg38.chr19_GL949751v2_alt        984779 35 +   1002683 tcttcctctctccctc-tctgtcttctctccctctc
s ponAbe2.chr19                  56932660 31 +  60714840 tcttcctctctccct-----gtcttctctccctctc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401476 33 - 106955855 tcttcctctctccct---ctgtcttctctccctctc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709807 36 +  64156825 tcttcctctctctctcctctgttttctctctctctc
i rheMac3.chr19                 C 0 I 120
s macFas5.chr19                  55867272 35 +  59248254 tcttcctctctctctcctctgttttctctctctct-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956723 24 +  51301725 tcttcttctctctctcctctgttt------------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657079 16 +  50890351 tctccctctctctctc--------------------
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66519 32 +    138250 tctctctctctccctc----tctttctattcctctc
i calJac3.chr22_GL285922_random I 78 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=57571.000000
s hg38.chr19_GL949751v2_alt        984814 172 +   1002683 tc-tccctctctcttcctctct--------------ctcttcctct---------gtcctct----tttctc-------tctctctctccctctctctcaca----tctctctttc--ccttcctttctctttc------ctctct------cttcctctctccctctccctccttct----gtcttcctctatccctctct--tcctct-------tttttcttcctctct--tcttgt
s ponAbe2.chr19                  56932691 211 +  60714840 tc-tccctctctcttcctctctttct--------ctctcttcctct-------ctgtcctctct--tttctc---cctgtctctctctccctctctctctcacatctctctctttc--ccttcctttctctttc------ctctctttctgtcttcctctctccctctccctccttctctctgtcttcctctctccctctctcttcctctctctccttttttcttcctctctcttctcgt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401509 216 - 106955855 tc-tccctctctctgcctctctctctgtcttctcttttctccctctctcatctctttcccttct--tttctctttcctctctttctcttcctctctccctt-----tccctccttctgtcttcctctctccctc-----tccctccttctgtcttcctctctccctctccctccttct----gtcttcctctctccctctctcttcctct-----ctcttttcttcctctct--tcttgt
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55867307 134 +  59248254 ---------------cctctgt---------------tttctctct-------gtctcctctct--tttctc-----------------cctctctctcacacacacacgtctttc--ccttcctttctctttctctttcctctctctcttcctctctctctccctctccctccttctctctgtcttcctct------------------------------------------------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956747 143 +  51301725 ---tatctctctc-tcctctgt---------------tttctctct-------gtctcctctct--tttctc-----------------c--ctctctcacacacacacgtctttc--ccttcctttctctttctctttcctctctctcttcctctctctctccctctccctccttctctctgtcttcctct------------------------------------------------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657095 115 +  50890351 tctcctttttctcttcctctct---------------ctctcctct-------gtcttctctctcctttctc-----------------cctctctctcacacacacacgtgtttc--ccttcctttctctttc--------------ctctctttctctcttcctctcc----------------------------------------------------------------------
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66551 116 +    138250 -----------tctccgtctct--------------cttttcctct-------cacttctctctc-cctctc-----------------accctctatctca----------tctc--tctccccatctcaccc----------ctctccgccttcctctttctctctcctttcttcc---tctcttcttg-------------------------------------------------
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e rheMac3.chr19                  60709843 120 +  64156825 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=6292.000000
s hg38.chr19_GL949751v2_alt        984986 12 +   1002683 ctctttctctcc
s ponAbe2.chr19                  56932902 12 +  60714840 ctctttctctcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401725 12 - 106955855 ctctttctctcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709963  8 +  64156825 ----ctctttcc
i rheMac3.chr19                 I 120 C 0
s calJac3.chr22_GL285922_random     66667  7 +    138250 -----tctctcc
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e chlSab2.chr6                   47657210  0 +  50890351 C
e papAnu2.chr19                  47956890  0 +  51301725 C
e macFas5.chr19                  55867441  0 +  59248254 C
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=95779.000000
s hg38.chr19_GL949751v2_alt        984998 107 +   1002683 tctctctctccctctttctctttctctctctcttcctctc--ccttcctcttcctctctctccttctttct---tcctctctctcttcttgtgtgtg---------------tctctctctctc--------tgt
s ponAbe2.chr19                  56932914 115 +  60714840 tctctctctccctctctctccttctctctctcttcctctctccctccctcttcctctctctccttctttct---tcctctctctcttcttgtctctc---------------tctctctctctc--ctctcttct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401737  99 - 106955855 tctctccctctctc-----------ctctctcttcctctc--cctccctcttcctctctct-----gttct---tcctctctctcttcttgtctctc---------------tctctctctcctctctctcttct
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60709971 121 +  64156825 tctctctctccctctccctccttctctctgtcttcctctctccttctctcttcctctctctccttttttct---tcctctctctcttcttgtctctctcccctctctcttcttctctctctctt-----------
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55867441  90 +  59248254 -----------------ctccttctctcttcct--ctctctccttttttcttcctctctctcttcttgtctctctcccctctctcttcttctctctc---------------tctctctctctt-----------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956890  82 +  51301725 -----------------ctccttctctcttcct--ctctctccttttttcttcctctctctcttcttgtctctctcccctctctcttct-----------------------tctccctctctt-----------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657210 101 +  50890351 -----ctctccctctccctccttctctctgtcttcctctctccttctctcttcctctctc---ttttttct---tcctctctctcttcttgtctctctcc------------cctctctcttct-----------
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66674   0 +    138250 C
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=146470.000000
s hg38.chr19_GL949751v2_alt        985105 62 +   1002683 tctctctctccctctccccccaactctctttccctACACACATCTTAAGAGGCCTCAGCAGT
s ponAbe2.chr19                  56933029 62 +  60714840 tctctctctccctctccccccaactctctctccctACACACATCTTAAGAGGGCTCAGCAGT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103401836 62 - 106955855 tctctctctccctctccccccaactctctctccctACACACATCTTGAGAGGCCTCAGCAGT
i nomLeu3.chr10                 C 0 M 2007
s rheMac3.chr19                  60710092 62 +  64156825 tctctctctccctctcCCCCCAGCTCTCTCTACCTACATACATCTTCAGAAGCCTCAGCAGT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55867531 62 +  59248254 tctctctctccctctccccccagctctctctACCTACATACATCTTCAGAAGCCTCAGCAGT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47956972 62 +  51301725 tccctctctccctctccccccagctctctctACCTACATACATCTTGAGAAGCCTCAGCAGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657311 62 +  50890351 tctctctctccctctccccccaactctctctccctACATACATCTTGAGAAGCCTCAGCAGT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66674 62 +    138250 tctctctctccctctcCCCCCAACTCTCTCTCCCTACACCCATCTTGAGAGCCCTTAGCAGT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=473290.000000
s hg38.chr19_GL949751v2_alt        985167 300 +   1002683 GTAAGGTAAGTTTAGCGACCCTGTGGCTGTGTAGAGATAAGCAAAGGGGGGCaaggagctccagtggtcccagactccagccatttgagtctttgcagcccaagcactgccccagcttcttgacagccccagccatcaccaaagggcacacagataagctgcctccaccaaggcctgtgcagatggtaggtttttgagtaaaatagatatgatccttgtctgaagccactgagttttagaataatttgttatatggccatagtaactggaaTGATTGCTGTAGGTTTATTTTA--TTTTATT
s ponAbe2.chr19                  56933091 299 +  60714840 GTAAGGTAAGTTTAGCGACCCTGAGGCTGTGTAGAGATAAGCAAAGGGGGGCaaggagctccagttgtcc-agactccagccgtttgagtctttccagcccaagcaccgccccagcttcttgacagccccagccatcaccaaagggcacacagataagctgcctccaccaaggcctgtgcagatagtaggtttttgagtaaaatagatatgatccttgtctgaagccactgagttttagaataatttgttacatggccatagtaactggaaTTATTGCTCTAGGTTTATTTTG--TTTTATT
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60710154 294 +  64156825 GTAAGGTAAGTTTAGCTACCCTGAAGCTGTGCAGAGATAAGCACA-GGGGCCAACGAGctccagttgtcccagactccagccgtttgaatatttccagcccaagcacctccccagcttcttgccagccccagccatcaccaaagggcacacagataagctgcctccaccagggcctgtgcagatggtaagtttttgagcaaaataaatacggtccttgtctgaagccactgagttttagaataatttgttatatggctgtagtaactggaaTGATTGCTCTAGG-----TTTA--TTTTATT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55867593 294 +  59248254 GTAAGGTAAGTTTAGCTACCCTGAAGCTGTGCGGAGATAAGCACA-CGAGCCAACGAGCTCCAGTTGTCCCAGACTCCAGCCGTTTGAATCTTTCCAGCCCAAGCACCTccccagcttcttgccagccccagccatcaccaaagggcacacagataagctgcctccaccagggcctgtgcagatggtaagtttttgagcaaaataaatacggtccttgtctgaagccactgagctttagaataatttgttatatggctgtagtaactggaaTGATTGCTCTAGG-----TTTA--TTTTATT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47957034 298 +  51301725 GTAAGGTAAGCTTAGCTGCCCTGAAGCTGTGCAGAGACAATCACA-GGGGCCAACGAGCTCCACTTGTCCCAGACTCCAGCCGTTTGAGTCTTTCCAGCCCAAGCACCTCCCCAGCTTCTTGCCGACCCCAGCCATCACCAAAGGGCACACAGATAAGCTGCCTCCACCAGGGCCTGTGCAGATGGTAGGTTTTTGAGCAAAATAGATATGGTCCTTGTCTGAAGCCACTGAGTTTTAGAATAATTTGTTATATGGCTGCAGTAACTGGAATGATTGCtctaggttta-ttta--ttttatt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657373 298 +  50890351 GTAAGGTAAGTTTAGCTACCCTGAAGCTGTGCAGAGATAAGCACA-GGGGCCAATGAGCTCCAGTTGTCCCAGACTCCAGCCGTTTGAGTCTTTCCAGCCCAAGCACCTccccagtttcttgccaaccccagccatcgccaaagggcacacagataagctgcctccaccagggcctgtgcagatggtaggtttttgagcaaaataaatatggtccttgtctgaagccactgagttttagaataatttgttatatggctgcagtaactggaaTGATTGCTCTAGGTTTA-TTTA--TTTTATT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66736 284 +    138250 GTAAGATGAGTTTAGCTACCCCAAAGCTCTGTCGAGATAAGAACG-GGGGCCAAGGAGCTCCAGCTGTCCCAGACTCT----------GTCTTTCCAGCTCAGGCACCTCTCCAGCTTCTT-----CCAGAGCCATCACCAAAGGGCGCGCagataagcgacctccaccaagccctgtgcatacagtagattattgagcaaaataaatatggtccttgtctgaagccactgggttttagaataatttgttacatgcctgtagtaactACAATGATTTCTCCGGGttt--tttaacttttatt
i calJac3.chr22_GL285922_random C 0 T 342
e canFam3.chr1                   20143099 1683 - 122678785 I
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=966428.000000
s hg38.chr19_GL949751v2_alt        985467 773 +   1002683 CATCCTTGCTGCATGCAACACAT-GCATGGCTCAGTAACTAGAaggaaagaagagaagaagggagggagaggcagagggtggacaggagaggatggtaggaaggaaaga---caggaaaggagGGTGTTGGTGGCCTTGCCTGCAAGCTGAGCAGACACCACGCAAACAGGTGACCTCCCAGTTAAGATGGAGGGGACTCAGGGCTCAGGAGGGGCAGAAGGTCCCCGTGTCGGAGAGCTGGGCAAGC-TTTCTGCAGGAAATGATGGGGATCACGGCCATGTGAGCCGGCAAGATTTCCCTCAGCCAgggaggagactccgggctgtgggaacagcttaagcagaaggcatgggacaggaatgcatatgagagatattgtgggaggagggaggg-ctgcctgggctggcatgcagggtatgggagggggtggaagggctgaggcgggagcc--atcagtaaaaggacccagagcgcggctccaatgccatggtaggaagcttggcgttgactcagagggcgctgggtaccgctgaagagtgttgagccaaggagggtcatgtcacgggcagatacatgttttagaatttct-tcttttctggctgagatgtagagtatggactggagagaagcacaggggacataggaaaggtagttCTAGAAAGAGGGGCTGTCCCACCAgggaaagtcaaccaactgttccccagtatccattcctcccttccagctcatggcactaaagccactgattgattagctgggTGCTATCAatctctctctc
s ponAbe2.chr19                  56933390 770 +  60714840 CATCCTTGCTGCGTGCAACACAT-GCATGGCTCAATAACTAgaaggaaagaagagaagaagcgaggaaggggcagagggtggataggagaggatggtaggaaggaaagaagacaggaaaggaggGTGTTAGTGGCCTTGCCTGCAAGCTGAGCAGACACCACGCAAACAGGTGACCTCCCAGTTAAGATGGAGGGGACTCAGGGCTCAGGAGGGGCAGAAGGTCCCTGTGTCGGAGGGCTGGGCAAGC-TTTCTGCAGGAAGTGATGGGGATCACGGCCATGTGAGCCGGCAAGATTTCCCTCAGCCAgggaggagactccaggctgtgggaacagcttaagcagaaggcatgggacaggaatgcag--cggagatattgtgggaggagggaggggctgcctgggctggcatgcagggtatgggagggggtggaagggatgaggcaggagcc--atcagtaaaaggacccagagcgcggctccaatgccatcgtaagaagcttggcgttgactcagagggcgctgggtactgctgaagagtgttgagccacggagggtca-----cgggcaggtacatgttttagaatttct-tcttttctagctgagatgtagagtatggactggagagaagcaccggggacataggaaaggtagttCTAGAAAGAGGGACTGTCCCACTAGGGAAAGTCAACCAACTGTTCCCCAGTATCCATTCCTGCCTTCTAGCTCATGGTACTAAAGCCAGTGATTGATTAGCTGGGTGCCATCAAtctctctctc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60710448 769 +  64156825 CATCCTCGCTGCATGCAGCACGTGGCATGGCTCAGTAACTAgaaggaaagaaaagaagaagggagggaggggcagagggtggacaggagaggatgggaggaaggaaacaagacaggaaaggagCGTGTTGGTGGCCTTGCCTGCAAACTGAGCAGACACCACGCAAACAGGTGACCTCCCAGTTAAGACGGAGGGGACTCAGGGCTCAGGAGGGGCAGAAGGCCCCTGTGttggagagctgggcaagcttttctgtaggaaatgatggggatcacggccatgtgagccggcaggatttcctccagccaggagggagactccaggctgtgggaacagcttaagcagaaggcaggggacaggaatgcag--gagagctattgtgggaggggggaggggctgcctgggctggcatgcagggtatgggagggggtggaagggatgaggcaggagcc--atcagt-aaaggacccagagcgtggctccaatgccatggtaggaagcttggcgtagactcagagggtgctgggtaccactgaagggtgttgagccacggagggtcg-----tgggcagatacgtgctttagaattgctgttttttctggctgagatgtagagtatggactggagaggagcacaggggacataggaagggcagttctagaaggAGCAACTGTCCCACTAAGGAAAGTCAAGTAAC--TTCCTCGGTATCCATTCTTCCCTTCCGGCTCACGGCACTAGAGCCACTGATTGA-CAGCTGGGTGCTATCAATCTCTCTCTC
i rheMac3.chr19                 C 0 I 13
s macFas5.chr19                  55867887 769 +  59248254 CATCCTCGCTGCATGCAGCACGTGGCATGGCTCAGTAACTAGaaggaaagaaaagaagaagggagggaggggcagagggtggacaggagaggatgggaggaaggaaacaagacaggaaaggaGCGTGTTGGTGGCCTTGCCTGCAAACTGAGCAGACACCACGCAAGCAGGTGACCTCCCAGTTAAGACGGAGGGGACTCAGGGCTCAGGAGGGGCAGAAGGCCCCTGTGttggagagctgggcaagcttttctgtaggaaatgatggggatcacggccatgtgagccggcaggatttcctccagccaggagggagactccaggctgtgggaacagcttaagcagaaggcaggggacaggaatgcag--gagagctattgtgggaggggggaggggctgcctgggctggcatgcagggtatgggagggggtggaagggatgaggcaggagcc--atcagt-aaaggacccagagcgtggctccaatgccatggtaggaagcttggcgtagactcagagggtgctgggtaccactgaagagtgttgagccacggagggtcg-----tgggcagatacgtgctttagaattgctgttttttctggctgagatgtagagtatggactggagaggagcacaggggacataggaagggcagttctagaaggAGGAACTGTCCCACTAAGGAAAGTCAAGTAAC--TTCCTCGATATCCATTCTTCCCTTCCGGCTCACGGCACTAGAGCCACTGATTGA-CAGCTGGGTGCTATCAAtctctctctc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47957332 768 +  51301725 catcctcGCTGCATGCAGCACGTGGCATGGCTCAGTAactagaaggaaagaagagaagaagggagggaggggcagagggtggacaggagaggatgggaggaaggaaacaagacaggaaaggagCGTGTTGGTGGCCTTGCCTGCAAACTGAGCAGACACCACGCAAACAGGTGACCTCCCAGTTAAGATGGAGGGGACTCAGGGCTCAGGAGGGGCAGAAGGCCCCTGTGTTGGAGAACTGGGCAAGC-TTTCTGTGAGAAATGATGGGGATCAC--CCCTGTGAGCCGGTAGGATTTCCTCCAGCCAGGAGGGAGACTCCAGGCTGTGGGAACAGCTTAAGCAGAAGGCAGGAGACAGGAATGCAG--GAGAGCTAttgtgggagaggggaggggctgcctgggctggcatgcagggtatgggagggggtggaagggatgaggcAGGAGCCAGATGAGT-AAAGGACCCAGAGCGTGGCTCCAATGCCATGGTAGGAAGCTTGGCGTAGACTCAGAGGGTGCTGGGTACCACTGAAGAGTGTTAAGCCACAGAGGGTCG-----TGGGCAGATACGTGCTTTAGAATTGCTGTTTTTTCTGGCTGAGATGTAGAGTATGGACTGGAGAGGAGCACAGGGGACATAGGAAGGGCAGTTCTAGAAGGAGGAACTGTCTCACTAAGGAAAGTCAAGTAAC--TTCCCCAGTATCCATTCCTCCCTTCCGGCTCACGGCACTAGAGCCACTGATTGA-CAGCTGGGTGctatcaatctctctctc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47657671 761 +  50890351 CATCCTCGCCGCATGCAGCACGTGGCATGGCTCAATAACTAGaaggaaagaagagaagaagggagggaggggcagagggtggacaggagaggatgggaggaaggaaagaagacaggaaaggaGCGTGTTGGTGGCCTTGCCTGCAAACTGAGCAGACACCACGCAAACAGGTGACCTCCCAGTTAAGACGGAGGGGACTCAGGGCTCAGGAGGGGCAGAAGGCCCCTGTGTTGGAGAGCTGGGCAAGC-TTTCTGTAGGAAATGATGGGGATCACGGCCATGTGAGCTGGCAGGATTTCCTCCAGCCAGGAGGGAGACAccaggctgtgggaacagctgaagcagaaggc--ggggcagggatgcag--gagagctattgtgggaggggggaggggctgcctgggctggcatgcagggtatgggagggggtggaagggatgaggcaggagcc--atcagt-aaaggacccagagcgtggctccaatgccatggtaggaagcttggcatagactcagagggtgctgggtaccactgaagagtgttgagccacggagggtca-----tgggcagatacatgctttagaattgctgttttttctggttgagatgtagagtatggactggagaggagcacaggggacatagga-----agttctagaaggaggaactgtctcactaaGGAAAGTCAAGTAAC--TTCCCCAGTATCCATTCTTCCCTTCCAGCTCATGGCACTAGAGCCACTGATTGA-CAGCTGGGTGCTATCAAtctctctctc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     67020 342 +    138250 T
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=27466.000000
s hg38.chr19_GL949751v2_alt        986240 63 +   1002683 atctctct-----ctccctctttctctccccctcatctgtgtcttttctctctctcatctctctgtct
s ponAbe2.chr19                  56934160 51 +  60714840 atctctct-----ctccctctttctccccccctcctctgtgtcttttctctctctc------------
i ponAbe2.chr19                 C 0 C 0
s macFas5.chr19                  55868656 58 +  59248254 -tctctccccccacccccgctttctctccccttcctctgtgtctcctctctctctc-tct--------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47958100 61 +  51301725 -tctctctc----ccccctctttctctccccctcctctgtgtctcctctctctttc-tctctcatct-
i papAnu2.chr19                 C 0 I 6
s chlSab2.chr6                   47658432 51 +  50890351 -tctcccccccc-ccaactctttctctccccctcctctgtgtctcctctctct---------------
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     67020 342 +    138250 T
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e rheMac3.chr19                  60711217 13 +  64156825 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=141233.000000
s hg38.chr19_GL949751v2_alt        986303 233 +   1002683 ccctctttctgtccccctcctccgtg----tctcctctctctctcttctctgtctcatatctctctcattgctctctccctctttctctccc-cctcctgtgtctccttctctctctctctttctcccccatctctctttctctcccccttcctctctttctcctctcactcttcctgtttctctcttt--ctctttcttcctctctttctccctgtctctctcttcctcttttcctttg
s ponAbe2.chr19                  56934211 157 +  60714840 ------------------------------tctcatctctctctct-------------------------------ccctctttctgtccc-cctcctgtgtctccttctctctct---------------------ttctctcccccttcctctctttctcctctcactcttcctgtttctctctcttcctctttcttcctctcttcctccctctctctctcttcctcttttcctttg
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60711230 228 +  64156825 CCCGCTTTCTCTCCCCTTCCTCTGTGtctcctctctctctctctctcatcgctctc---tctctctcatctctctctccctctttctctcccccaccccgtgtctccttctctctctctctctct---ccatctctctttctctcccccttactctctttctcctctcagtcttcc----tctctgttt--ctctctctcttcctctttctccctctctctctctTCCTCTTTTCCTTTG
i rheMac3.chr19                 I 13 C 0
s macFas5.chr19                  55868714 195 +  59248254 ------------------------------ctctctctctctctctcatcgctctc---tctctctcatctctctctccctctttctctccc---ccccgtgtctccttctctctctctctctct---ccatctctctttctctcccccttactctctttctcctctcagtcttcc----tctctgttt--ctctctctcttcctctttctccctctctctctcttcctcttttcctttg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47958167 138 +  51301725 ------------------------------ccctctttctctccc------------------------cgctctgtgtctccttctctctc----------------tctctatctctctcttt---ctctcccccttactctctc-----------------------tcttcc----tctctgttc--ctctctctcttcctctttctccctctctctctcttcctcttttcctttg
i papAnu2.chr19                 I 6 C 0
s chlSab2.chr6                   47658483 187 +  50890351 ------------------------------------ctctctctctcatcactctc---tctctctcatctctctctccctctttctctccc---ccccatgtctccttctc--tctctctctct---ccatctctctttctctcccccttactctctttctcctctcagtcttcc----tctctgttt--ctctctctcttcctctttctccctctctctctcttcctcttttcctttg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     67020 342 +    138250 T
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=143213.000000
s hg38.chr19_GL949751v2_alt        986536 81 +   1002683 tctctctctctccccccaactctctctccctACACACATCTTGAGAGACCTCAGCAGTGTAAGATAAGTTTAGCTACTCCA
s ponAbe2.chr19                  56934368 81 +  60714840 tctctccctctcCCCTCAACTCTCTCTCCCTACACACATCTTAAGAGACCTCAGCAGTGTAAGATAAGTTTAGCTACTCCA
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60711458 81 +  64156825 TCTCTCCCTCTCCCCCCAACTTTCTCTTCCTACACACATCTTGAGAGACCTCCGCAGTGTAAGATAAGTTTAACTCCCCCA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55868909 81 +  59248254 tctctccctctcCCCCCAACTTTCTCTTCCTACACACATCTTGAGAGACCTCAGCAGTGTAAGATAAGTTTAACTCCCCCA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47958305 81 +  51301725 tctctccctctccccccaactttctctccctACACACATCTTGAGAGGCCTCAGCAGCGTAAGGTAAGTTTAACTCCccca
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47658670 81 +  50890351 tctctccctctcCCCCCAACTTTCTCTTCCTACACACGTCTTGAGAGGCCTCAGCAGTGTAAGATAAGTTTAACTCCCCCA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     66678 81 +    138250 tctctccctctcCCCCCAACTCTCTCTCCCTACACCCATCTTGAGAGCCCTTAGCAGTGTAAGATGAGTTTAGCTACCCCA
i calJac3.chr22_GL285922_random T 342 I 1902
e canFam3.chr1                   20143099 1683 - 122678785 I
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=647320.000000
s hg38.chr19_GL949751v2_alt        986617 536 +   1002683 Cggcctggcacggtagctcacgcctttaatcccagcactttgagaggccaaggcaggcagatcactggagattaggggtttgaaaccagcctggccaacatggtgaaaccctgtctctactacaagtaccaaaaaattagctgggcatggtggcacgcgcctgtagtcccagctactcggaaggctgaggcaggagaatcgcttgagcctgggaggcggaagttgcagtgagccgagacca-cacctctgcactccagcctgggtgacagagtgagattctgtctcaaaaaaa---gaaagaGGAggccgggcactgtggctcaggcctgtaatcccagcactttgggaggccgaggcatgcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctatt-aaaaatacaaaaaaattagccaggcacggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgaga
s ponAbe2.chr19                  56934449 538 +  60714840 Cggcccggcacggtggctcacgcctttaatcccagcactttgagaggccaaggcaggcagatcactggagatcaggggtttgaaaccagcctggccaacatggtgaaaccctgtctctactacaagtaccaaaaaattagctgggcatggtggcacgcacctgtagtcccagctactcggaaggctgaggcaggagaatcgcttgagcctaggagacagaggttgcagcgagccaagacca-cacctctgcactccagcctgggtgacacagtgagattctgtctcaaaaaaaaaagaaagaGGAggccgggcactgtggctcaggcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctact-aaaaatacaaaaaa-ttagccgggcatggtggcaggtgcctgtagttccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcggaga
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60711539 526 +  64156825 Tggctgggcatggtggtgcacgcctgtaatcctaacactttgggaggccgaggcaggaggatcacttgagatcaggagtttgaaaccagcctggccaaca---tgaaaccctgtctctactacaattaccaaaaaattagct-ggcatagtggctcacacctgtagtcccagctactcggaaggctgaggcagaagaatcgcttgaacccgggagtcagaggttgcagtgagcagagatcg-catctctgcactccagcctgggcgacagagcgagattctgtctcagaaaaa---GTCAGAGGAGGCTg------gtggctcacacctgtaatcccaggactttgggaggctgaggcaggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaatacaaaaaa-ttagccaggtgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaaccagggaggcggagcttgcagtgatctgaga
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55868990 526 +  59248254 Tggctgggcatggtggtgcacgcctgtaatcctaacactttgggaggccgaggcaggaggatcacttgagatcaggagtttgaaaccagcctggccaaca---tgaaaccctgtctctactacaattaccaaaaaattagct-ggcatagtggctcacacctgtagtactagctactcggaaggctgaggcaggagaatcgcttgaacccgggagtcagaggttgcagtgagcagagatcg-catctctgcactccagcctgggcgacagagcgagattctgtctcagaaaaa---GTCAGAGGAGGCTg------gtggctcacacctgtaatcccaggactttgggaggctgaggcaggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaatacaaaaaa-ttagccaggtgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaaccagggaggcggagcttgcagtgatctgaga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47958386 528 +  51301725 tggctgggcatggtggggcacgcctgtaatcctaacactttgggaggccgaggcaggcggatcacttgagatcaggagtttgaaaccagcctagccaaca---tgaaaccctgtctctactacaagtaccaaaaaattagccgggcatagtggctcacacctgtagtcccagctactcggaaggctgaggcaggagaatcgcttgaacccgggagtcagaggttgcagtgagcagagatcgccacctctgcactccagcctgggcgacagagcgagattctgtctcagaaaaa---gtcAGAGGaggctg------gtggctcacacctgtaatcccaggactttgggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctattaaaaaatacaaaaaa-ttagccaggtgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacccgggaggcagagcttgccgtgagtCAAGa
i papAnu2.chr19                 C 0 I 72
s chlSab2.chr6                   47658751 525 +  50890351 Tggctgggcatggtggtgcacgcctgtaatcctgacactttgggaggccgaggcaggcggatcacttgagatcaggagtttgaaaccagcctagccaaca---tgaaaccctgtctctactacaagtaccaaaaaattagcg-ggcatagtggctcacacctgtagtcccagctactcggaaggctgaggcaggagaatcgcttgaacccgggagtcagaggttgcagtgagcagagattg-cacctctgcactccagcctgggcgacagagcgagattctgtctcagaaaaa---GTAAGAGGAGGCTg------gtggctcacacctgtaatcccaggactttgggaggccgagacaggtggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctctact-aaaaatacaaaaaa-ttagccaggcgtggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgatctgaga
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66759 1902 +    138250 I
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=28076.000000
s hg38.chr19_GL949751v2_alt        987153 33 +   1002683 tcgcgccactgcactccagcctgggcgacagag
s ponAbe2.chr19                  56934987 33 +  60714840 tcacaccactgcactccagcctgggcgacagag
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60712065 33 +  64156825 tggtgccactgcactccagcctgggcaacagag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55869516 33 +  59248254 tggtgccactgcactccagcctgggcaacagag
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47659276 33 +  50890351 tggtgccactgcactccagcctgggcaacagag
i chlSab2.chr6                  C 0 I 383
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66759 1902 +    138250 I
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e papAnu2.chr19                  47958914 72 +  51301725 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=3987.000000
s hg38.chr19_GL949751v2_alt        987186 12 +   1002683 caagactctgtc
s ponAbe2.chr19                  56935020 12 +  60714840 caagactctgtc
i ponAbe2.chr19                 C 0 C 0
s rheMac3.chr19                  60712098 12 +  64156825 agaaatcctgtc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55869549 12 +  59248254 agaaatcctgtc
i macFas5.chr19                 C 0 I 638
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66759 1902 +    138250 I
e nomLeu3.chr10                 103401898 2007 - 106955855 M
e chlSab2.chr6                   47659309 383 +  50890351 I
e papAnu2.chr19                  47958914 72 +  51301725 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=6111.000000
s hg38.chr19_GL949751v2_alt        987198 39 +   1002683 aagaaagaaa-gaaaagaaaagaaaaaaagaaaAGAATAA-
s ponAbe2.chr19                  56935032 39 +  60714840 aagaaagaaaagaaaagaaaaaaagaaaagaaaagaa-aa-
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103403960 38 - 106955855 aagggaggga-gagaggaagggaagtaaggaagggag-gg-
i nomLeu3.chr10                 M 2007 C 0
s rheMac3.chr19                  60712110 15 +  64156825 -----------------------tgaaaaaaaaagaa-a--
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55870199 39 +  59248254 aaggaaggaa-ggaaggaaagaaagaaaaagaaagaa-aga
i macFas5.chr19                 I 638 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66759 1902 +    138250 I
e chlSab2.chr6                   47659309 383 +  50890351 I
e papAnu2.chr19                  47958914 72 +  51301725 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=9924.000000
s hg38.chr19_GL949751v2_alt        987237 28 +   1002683 agggagggagggaagg--gaaaggaaggga
s ponAbe2.chr19                  56935071 21 +  60714840 agggagggagggaggg---------aggga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103403998 30 - 106955855 agggaggaagggaaggaaggaagggaggga
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55870238 20 +  59248254 agggtgggagggaggg---------aggg-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47958986 21 +  51301725 agggagggaggaaggg--------aaggg-
i papAnu2.chr19                 I 72 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66759 1902 +    138250 I
e chlSab2.chr6                   47659309 383 +  50890351 I
e rheMac3.chr19                  60712125  0 +  64156825 C
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=50696.000000
s hg38.chr19_GL949751v2_alt        987265 74 +   1002683 aggaaggaaggaagg-aaggaaggaaggaaggaaggaaggaaggaaggggaggggaggggaggggaag------ggaggga
s ponAbe2.chr19                  56935092 45 +  60714840 aggaa--aaggaagggaaggaaggaaggaagaaagaaagaaagaaag----------------------------------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103404028 80 - 106955855 gggaggaagggaagt-aaggaagggagggagagaggaagggaggaagggagggagggaggaagggagggaggaaggaagga
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60712125 32 +  64156825 ----------------------------------------aaggaaggaaggaaggaaggaaggaagg---------agga
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55870258 71 +  59248254 aggaaggaaggaagg-aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg---------agga
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47959007 74 +  51301725 agggagggagggagg-aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagcaaggaagg------agaagga
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47659692 68 +  50890351 ----agggagggagg-gaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg--------aagga
i chlSab2.chr6                  I 383 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e calJac3.chr22_GL285922_random     66759 1902 +    138250 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=78437.000000
s hg38.chr19_GL949751v2_alt        987339 38 +   1002683 agAAAGGCA--------------------GGCCCTGATGTTCAGGGAGCTGAGAGTGA
s ponAbe2.chr19                  56935137 38 +  60714840 aaaAAGGCA--------------------GGCCCTGATGTTCAGGGAGCTGAGAGTGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103404108 58 - 106955855 aggaaggcaggcaggcaggcaggcaggCCGGCCCTGATGTTCAGGGAGCTGAGAGTGA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60712157 38 +  64156825 aAGAAAGAA--------------------GACCCTGATGTTCAGGGAGCTGAGAGTGA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55870329 38 +  59248254 aagaaagaa--------------------gACCCTGATGTTCAGGGAGCTGAGAGTGA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47959081 38 +  51301725 aacaaagaa--------------------gacCCTGATGTTCAGGGAGCTGAGAGTGA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47659760 38 +  50890351 aagaaagaa--------------------gACCCTGATGTTCAGGGAGCTGAGAGTGA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     68661 38 +    138250 AAAGAGGAA--------------------GACCCTGGGGTTCAGGGAGCGGAGAGTGA
i calJac3.chr22_GL285922_random I 1902 C 0
e canFam3.chr1                   20143099 1683 - 122678785 I
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=340370.000000
s hg38.chr19_GL949751v2_alt        987377 161 +   1002683 AGTCACCGGCTCCAACCCAGGATCCAAACTCAAGTCTGTCTGGGGTCCTATC-CCCGTCACCAC--CCCC--------CGCCCCGACCCA-------------------------TCCCCCAGAGACCTGGGAAGGAGCCAGGCTCCTCCGGTTTCAGGAAAGGGCTGCACAAACCACCCCGCCACGATCCCTCCCA
s ponAbe2.chr19                  56935175 161 +  60714840 AGTCACCAGCTCCAACCCAGGATCCAAATTCAAGTCTGTCTGGGGTCCTATC-CCCGTCACCAC--CCCC--------CACCCCAACCCA-------------------------TCCCCCAGAGACCTGGGAAGGAGCCAGGCTCCTCCGGTTTCAGGAAAGGGCTGCACAAACCGCCCCGCCACGATCCCTCCCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103404166 163 - 106955855 AGTCACCGGCTCCAACCCAGGATCCAAACTCAAGTCTGTCTGGGGTCCTATC-CCCGTCACCACCACCCC--------CGCCCCGACCCA-------------------------TCCCTCAGAGACCTGGGAAGGAGCCAGGCTCCTCCGGTTTCAGGAAAGGGCTGCACAAACCGCCCCGCCACGATCCCTCCCA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60712195 151 +  64156825 AATCACTGGCTCCAACCCAGGATCCAAACTCAAGTCTGTCTGGGGTCCTGTC-CCCGTCACCA---CCCG--------CTCCCCGACCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAC----------------------------------GGGGCGGCACAAACCGCCCCTCCACGATCCCTCCCA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55870367 160 +  59248254 AATCACTGGCTCCAACCCAGGATCCAAACTCAAGTCTGTCTGGGGTCCTGTC-CCCGTCACCA---CCCG--------CTCCCCGACCCA-------------------------TCCACCACAGACCTGGGAAGGAGCCAGGCTCCTCCGGTTTCAGGAAAGGGCGGCACAAACCGCCCCTCCACGATCCCTCCCA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47959119 160 +  51301725 AATCACTGGCTCCAACCCAGGATCCAAACTCAAGTCTGTCTGGGGTCCTGTC-CCCATCACCA---CCCG--------CTCCCCGACCCA-------------------------TCCACCACAGACCTGGGAAGGAGCCAGGCTCCTCCGGTTTCAGGAAAGGGCGGCACAAACCGCCCCTCCACGATCCCTCCCA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47659798 160 +  50890351 AATCACTGGCTCCAACCCAGGATCCAAACTCAAGTCTGTCTGGGGTCCTATC-CCCGTCACCA---CCTC--------CTCCCCGACCCA-------------------------TCCACCACAGACCTGGGAAGGAGCCAGGCTCCTCCGGTTTCAGGAAAGGGCGGCACAAACCGCCCCTCCATGATCCCTCCCA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     68699 157 +    138250 CGTCACTGGCTCCAACCCAGGATGCAAAGTCAAGTCTGTCTGGGGTCCTGGC-CCCATCACCA---CTC-----------CCTTGACCCA-------------------------GCCCCCACAGACCTGGGAAGGAGCCAGGCTCCTCCAGTTTCAGGACGGGGCTGCCCAAACCGCCCTGCCAGGATCCCTCCCA
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20144782 156 - 122678785 agtcacctgGTCTGACCCAAGACCTAAACTCCAGTC--TCTGAGTCCCTTCCACTCGCTGCCC---CCCCCCTCCGGGCCCCCAGGCCCA-------------------------GCCCCCTCCCACCAGCCCTAGGGCCAGTCTCCCCCAGTTTCAGGAAATTG--------ACCCACCCTCC---ATCTCTCCCA
i canFam3.chr1                  I 1683 C 0
e panTro4.chr19                  59979834 1933 +  63644993 M

a score=2716755.000000
s hg38.chr19_GL949751v2_alt        987538 882 +   1002683 GAGAACAAACAG-------------CTCCCGGCCACCGGCAGTCT--C---------------CCTCCTCCTCCTG---CCAGGCTGGTTCCCAGACCCACCCTCCCTGTGTCATAAGCGCCTCTCCCCGCACTCTCACCAGGGCTGGCTGTTC---TCAGAGGAACGCCCAGGAAAAACCTACCCGAACCCCTTTCAGCTGGGAAGGGGACCCGCCTGGGCTTCCT---CACCGCCGATGAGACCTCCCTCGTCGTACACTTAGAGCTGCC-TGTGTTTTCCTTCCTTCCTTAAGCGGGCTGGGAACTCTAGACACTCAGGGATGGG-----CCAGCCCATTAGAGTAAGCATTCGGCCACC-TCTAGGCTGCTACGGTCACTGCTGCTGTCACCATCAACGT-------GACTGTCTCACACCTCACTTCCTCCGGCCAGCCACACCCCTGCAGATTTAACCCGCCAGCCTCCCTAAGg--tttcctctgcctgaaatcctctctgcattcctggctcattctcgaaattgaggtcaaagctcagatgccgcctcctt-----------ccctgaccaccctacctgaagcagccgcacctgcctgctcctagtcacgccgttccttcacc----tgtttcgtttcctccacagggtttaccacaatctgaaagtcttattcatgcaggtgtctacttgtttatct------ccccaccacacctactaggatgacaatatcacaagggctggggtttcatctgtctcctcct-cctctgtatctccagcacatgaaacatgcttggcacactgtaggtgcttaagtatttgctactacatcactttgggattttgcataggacactcccaatgcttagaatgtcaatctttgcttcattgtccttggcaaactcctattcatcctttgaaaccccatccatttatcccttaaccag
s panTro4.chr19                  59981806 881 +  63644993 GAGAACAAA-AG-------------CTCCCGGCCGCCGGCTTTCT--C---------------CCTCCTCCTCCTG---CCAGGCCGGTTCCCAGACCCACCCTCCCTGTGCCATAAGCGCCTCTCCCCGCACCCTCACCAGGGCTGGGTGTTC---TCAGAGGAACGCCCAGGAAAAACCTACCCGAACCCCTTTCAGGTGGGAAGGGGACCCGCCTGGGCTTCCT---CACTGCCGATGAGACCTCTCTCGTCGTACACTTAGAGCTGCC-TGTGTTTTCCTTCCTTCCTTAAGCGGGCTGGGAACTCTAGACACTCAGGGATGGG-----CCAGCCCATTAGAGTAAGCATTCGGCCACC-TCTCGGCTGCTACGGTCACTGCTGCTGTCACCATCAACGT-------GACTGtctcacacctcacttcctccggccagccacacccctgcagatttaacccgccagcctccctaagg--tttcctctgcctgaaatcctctccgcattcctggctcattctcgaaattgaggtcaaatctcagatgctgcctcctt-----------ccctgaccaccctccctgaagcagccgcacctgcctgctcctagtgactctgttccttcacc----tgtttcgtttcctccacagggtttaccacaatctgaaagtcttattcatgcaggtgtctacttgtttatct------ccccaccacacctactaagatgacaatatcacaagggctggggtttcatctgtctcctcct-cctctgtatctccagcacataaaacatgcttggcacactgtaggtgcttaagtatttgctactacatcactttgggattttgcataggacactcccaatgcttagaatgtcaatctttgcttcattgtccttggcaaactcctattcatcctttgaaaccccatccatttatcccttaaccag
i panTro4.chr19                 M 1933 C 0
s ponAbe2.chr19                  56935336 879 +  60714840 GAGAACAAACAG-------------CTCCTGGCCGCC-GCAGTCT--C---------------CCTCCTCCTCCTG---CCAGGCCGGTTCCCAGACCCACCCTCCCTGTGCCATAAGCGCCTCTCCCCGCACCCTCACCAGGGCTGGCTGTTC---TCAGAGGAACGCCCAGGAAAAACCTACCCGAACTCCTTTCAGCTGGGAAGGGGACCCGCCTGGGCTTCCT---CACTGCCGATGAGACCTCTCTCATCGCACACTTAGAGCTGCC---TGTTTTCCTTCCTTCCTTAAGCGAGCTGGGAACTCTAGACACTCAGGCTTGGG-----CCAGCCCATTAGAGTAAGTATTCGGCCACC-TCTTGACCGCTAAGGTCACTGCTGCTGTCACCATCAACAT-------GACTGTCTCACACCTCACTTCCTCCGGCCAGCCACACCCCTGCAGAATTCACCCGCCAGCCTCCCTGAGg--tttcccctgcctgaaatcctctccacattcctggctcattctcgaaattgaggtcaaagctcagatgccacctcctt-----------ccctgaccaccctatctgaagcagccgcacctgcctgctcctagtcactcagttccttcacc----tgtttcgtttcctccacagcatttaccacaatctgaaagtcttattcatgcaggtgtctacttgtttatct------ccccatcacacccactaggatgacaatatcacaagggctggggtttcatctgtctcctcct-cctctgtatctccagcacatgaaacatgcttggcacactgtaggtgcttaagtatttgctactacatcactttgggattttgcataggacactcccaatgcttagaatgtcaatctttgcttcattatccttggcaaactcctattcatcctttgaaaccccatccatttatcccttaaccag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103404329 882 - 106955855 GAGAACAAACAG-------------CTCCTGGCCGCCAGCAGTCT--C---------------CCTCCTCCTCCTG---CCAGGCCGGTTCCCAGACCCACCCTCCCTTCGCCATAAGCGCCTCTCCCCGCACCCTCACCAGGGCTGACTGTTC---TCAGAGGAATGCCCAGGAAAAACCTACCCGAACCCCTTTCAGCTGGGAAGGGGACCCACCTGGGCTTCCT---CACTGCCGATGAGACCTCCCCCATCGCACACTTAGAGCTGCC-TGTGTTTTCCTTCCTTCCTTAAGCGGGCTGGGAACTCCAGACACTCAGGCTTCGG-----CCAGCCCATTACAGTAAGCATTCGGCCACC-TCTCGGCTGCTACGGTCACTGCTGCTGTCACCATCAACGT-------GACTGTCTCACACCTCACTTCCTCCGGCCAGCCACACCCCTGCAGATTTAACCCGCTAGCCTCCCTAAGg--tttcctctgcctgaaatcctctccgcgttcctggctcattctcgaaattgaggtcaaagctcagacgccgcctcctt-----------ccctgaccaccctacctgaagcagccgcacctgcctgctcctagtcactccgttccttcacc----tgtttcgtttcctccacagcgtttaccacaatctgaaagtcttattcatgcaggtgtctacttgtttatct------ccccaccacacccactaggatgacaatctcacaagggctggggtttcatctttctcctccc-cctctgtatctccagcacatgaaacatgcttggcacactgtaggtgcttaagtatttgctactacatcactttgggattttgcataggacagtcccaatgcttagaatgtcaatctttgcttcattgtccttggcaaactcctattcatcctttgaaaccccatccatttatcccttaaccag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60712346 844 +  64156825 GAGAGCAAACAG-------------CTCCCGGCCGCCGCAGGTCT--C---------------CCTCCTCTTCCTG---CCAGGCCGGTTCCCAGACCCACCCTCCCTGTGCCATAAGCGCCTCTCCCCGCACCCTCACCAGGGCTGGCTGGTC---TCAGAGGAACGCCCAGGAAAAATCTACCTGAACCCCTTTCCGCTGGGAAGGGGACCCGCCTGGGCTTCCT---CACTGCCGATGAGACCTCCCTCATCGCACGCTTAGAGCTGCC-TGCATTTTCCTTCCTTCCTCAAGCGGGCTGGGAAGTCTAGAGACTCAGGCTTGGG-----CCAGCCCATTAGCGTAAGCA-TCAGCCACCGTCTCAGCTGCTACGGTCA---CTGCTGTCACCATCAACGT-------GACCATCTCACACCTCACGTCCTCCGgccagccacactcctgcacatttaagccgccagcctccctaagg--tttcctctgcctgaaatcctctccgcattcctggctcattctcgaaattgaggtcaaa--------accgcctcctt-----------ccctgaccaccctatctgaagcag-----------------------------cccttcacctc--tgtttcgtttcctctacagcgtttactacaatctgaaagtcttattcacgtaggtgtctacttgtttatct------ccccaccacacccactaggatgacaatatcacaagggctggggtttcatctgtctcctcct-cctctgtgtctccagcacataaaacatgcttggcacactgtaggtgcttaagtatttgctactacgtcactttgggattttgcataggacactcccagtgcttagaatctcaattgttgcttcattgtccttggcaaactcctattcatcctttaaaaccccatccatttatcccttaaccaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55870527 870 +  59248254 GAGAGCAAACAG-------------CTCCCGGCCGCCGCAGGTCT--C---------------CCTCCTCTTCCTG---CCAGGCCGGTTCCCAGACCCACCCTCCCTGTGCCATAAGCGCCTCTCCCCGCACCCTCACCAGGGCTGGCTGGTC---TCAGAGGAACGCCCAGGAAAAATCTACCCGAACCCCTTTCCGCTGGGAAGGGGACCCGCCTGGGCTTCCT---CACTGCCGATGAGACCTCCCTCATCGCACGCTTAGAGCTGCC-TGCATTTTCCTTCCTTCCTCAAGCGGGCTGGGAAGTCTAGAGACTCAGGCTTGGG-----CCAGCCCATTAGCGTAAGCA-TCAGCCACCGTCTCAGCTGCTACGGTCA---CTGCTGTCACCATCAACGT-------GACCGTCTCACACCTCACGTCCTCCGGCCAGCCACACCCCTGCACATTTAAGCCGCCAGCCTCCCTAAGg--tttcctctgcctgaaatcctctccgcattcctggctcattctcgaaattgaggtcaaa--------accgcctcctt-----------ccctgaccaccctatctgaagcagccgcacctgcctactcgtagtcactccgtcccttcacctc--tgtttcgtttcctctacagcgtttactacaatctgaaagtcttattcacgtaggtgtctacttgtttatct------ccccaccacacccactaggatgacaatatcacaagggctggggtttcatctgt---ctcct-cctctgtatctccagcacataaaacatgcttggcacactgtaggtgcttaagtatttgctACTACGTCActttgggattttgcataggacactcccagtgcttagaatctcaattgttgcttcattgtccttggcaaactcctattcatcctttaaaaccccatccatttatcccttaaccaa
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47959279 875 +  51301725 GAGAGCAAACAG-------------CTCCCGGCCGCCGCCagtct--c---------------cctcctcttcctg---ccaGGCCGGTTCCCAGACCCACCCTCCCTGTGCCATAAGCGCCTCTCCCCGCACCCTCACCAGGGCTGGCTGGTC---TCAGAGGAACGCCCAGGAAAAACCTACCCGAACCCCTTTCCGCTGGGAAGGGGACCCGCCTGGGCTTCCT---CACTGCCAATGAGACCTCCCTCATCGCACGCTTAGAGCTGCc-tatgttttccttccttcctcaagcGGGCTGGGAAGTCTAGGGACTCAGGCTTGGG-----CCAGCCCATTAGCTTAAGCATTCAGCCACCGTCTCAGCTGCTACGGTCA---CTGCTGTCACCATCAACGT-------GACCGTCTCACACCTCACGTCCTCCGGCCAGCCACGCCCCTGCACATTTAAGCCGCCAGCCTCCCTAAgg--tttcctctgcctgaaatcCTCTCTGCATTCCTGGCTCATTCTCGAAATTGAGGTCAAA--------ACCGcctcctt-----------ccctgaccaccctatcTGAAGCAGCCGCACCTGCCTACTCGTAGTCACTCCGTCCCTTCACCTC--TGTTTCGTTTCCTCTACAGCGTTTACTACAATCTGAAAGTCTTATTCACATAGGTGTCTACTTGTTTATCT------CCCCAccacacccactaggatgacaATATCACAAGGGCTGGGGTTTCATCTGTCTCCTCCTACCTCTGTATCTCCAGCACATAAAACATGCTTGGCACACTGTAGGTGCTTAAGTATTTGCTACTACGTCACTTTGGGATTTTGCATAGGACACTCCCAGTGCTTAGAATGTCAATTGTTGCTTCATTGTCCTTggcaaactcctattcatcctttaaaACCCCATCCATTTATCCCTTAACCAA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47659958 859 +  50890351 GAGAGCAAACAG-------------CT-CCGGCCGCCGCAAGTCT--C---------------CCTCCTCTTCCTG---CCAGGCCGGTTCCCGGACCCACCCTCCCTGTACCACAAGTGCCTCTCCCTGCACCCTCACCAGGGCTGGCTGGTC---TCAGAGGAACACCCAGGAAAAACCTACCCGAACCCCTTTCCGCTGGGAAGGGGACCCGCCTGGGCTTCCT---CACAGTTGATGAGACGTCCCTCATCGCACACTTAGAGCTGCC-TGTGTTTTCCTTCCTTTCCT---------------TCTAGAGACTCAGGCTTGGG-----CCAGCCCATTAGCGTAAGCA-TCAGCCACCATCTCAGCTGCTACGGTCA---CTGCTGTCACCATCAACGT-------GACCGTCTCACACCTCACGTCCTCCGGCCAGCCACACCCCTGCACATTTAACCCGCCAGCCTCCCTAAGG--TTTCCTCTGCCTGAAATCCTCTCCGCATTCCTGGCTCATTCTCGAAATTGAGGTCAAA--------ACCGCCTcctt-----------ccctgaccaccctatctgaagcagccgcacctgcctactcgtagtcactctgtcccttcacctctgtgtttcgtttcctctacagcgtttaccacaatctgaaagtcttattcacgtaggtgtctacttgtttatct------ccccaccacacccactaggatgacaatatcacaggggctggggtttcatctgtctcctcct-cctctgtatctccagcacataaaacatgcttggcacactgtaggtgcttaagtatttgctactatgtcactttgggattttgcataggacactcccaatgcttagaatgtcaattgttgcttcattgtccttggcaaactcctattcatcctttgaaaccccatccatttatcccttaaccag
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     68856 844 +    138250 GAGAACAAACAG-------------CTCCCGCCCGGCGACAGCCT--CCCTCCTCCACCGCCTCCTCCTCCTCCTG---CCAGGCCGGTTCCCAGACCCACCCTC---------------CCTCTCCCCGCACCCTCGCCAGGGCTGGCTGGTC---TCAGAGGAACGCCTAGGAAAAACCCACCCAAACCCCTTTCAGTTAGGAAGGGGACACACCTGGGCTTCCTGAACGCTGCCGATGAGACCTCTCTCATCGCA--GTTAGAGCTGCC---------------------AGACAATCTGGGAACCCTAGAAACTGAGGCTTGGG-----CCAGCCCATTAGAGTCAGCACTCAGCCACCCTTCCGGCTGCTGCCGCCA---GTGCTGTCACCATCAGCGT-------GACTGTCACACACCTCACTTCCTGCGGCCAGCCGCACCCCTGCAGATTTAACCCGCCAGCCTCCCCAAGg--tctccttcgcctgaaatcctctccgcattcctggc---ttctcaaaattcaggtcaaagctcagatgccacctcctc-----------ccctgaccaccctccctgaagtggctgcacctgcctgctcctagtcactccatcccttcacctc--tgttctgtttcctccacagcgtttaccacagtctgaaagtcttattcatgtaggtgtctacct-tttatct-------cccaccacacccagtaggatgacagtatcacaaaggctggggtttcatctgtctcctcct-cctct--------------taaaacatgcttggcgtgtggtaggtgcttaagtatttgctACTACGTCActttgggattttgaatagaacactcccaatgcttagaatgtcaatctttgcttcactgtccttggcaaactcctattcatcctatgaaaccccatcaatttatcccttaatcag
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20144938 829 - 122678785 GAGAACAAACAGCCTCGCTCTCAACCTCCCTACCCACCCCCTTCTGCC---------------CCTCCCCCGCCAGGCACCTGGCGGGTTCTCAGACCCACCCTCCTTGGGTCACA-------------GTGCCTGCTCTGGGGCAGGCAGGCCCATCCCCAGATCTGCACGGAAACACCTCACCCA---CCCTTCC------------------TCTGGGCTTCCC---CACAGCC---------------------CATTCAGGGCAGCCTTGAGTTTGTGACACCTCCCCAGCC----------------AGACTCAGGCTCAGGATGACCCCATCCACCCACGCTGGAGTTTGGCCACCCTCTTGTTTGCTATTGCCA---TAGTTGTCACCGTGACAGTCCTGGTAGCCAGTCTCCAGCCTGACATGCTCTGGccagacacaaccctacaggcctcacctgccagcctccccaaggtattccttctgcccagaaccctctctgcattcctgactcattcttgaaattcaggtcaaagctcagatgccacctcctcactgaggccagccctgacta-cctctctgaagtgactatacctgcttgccctcagtagccccatctcttcacctt--ggttttatgtcctccatggc----accac-------aagtcttcctcatggatgtgcttaccagtttaccttctgtctcccaccacacccgccagggcaacaataacacaagggcagggcttttgtctgtccagtgct-c-------------------agaacgtgcttggaacaaagtcgg----cATGTATTTGCTACTATGtgactttgggactttgcaaatgctactatcaatgcttagactgtcatcccttgctgcattgtccttgggaaactcctatttatccttcagaaccctctccagttatcacTCAACTGG
i canFam3.chr1                  C 0 I 483

a score=544796.000000
s hg38.chr19_GL949751v2_alt        988420 180 +   1002683 gaaaggcttctgtgcctcatacaaccacccataaagctggattagggctttctctggggacac-ccttgccctgtgccacacttccattagcgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTACGGCACACATTTTGTCTCAGGAGCTACGTattgaataaataaat
s panTro4.chr19                  59982687 180 +  63644993 gaaaggcttctgtgcctcatacaaccacccataaagctggattagggctttctctggggacac-ccttgccctgtgccacacttccattagcgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTACGGCACACATTTTGTCTCAGGAGCTACGTATTGAATAAATAAAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936215 180 +  60714840 gaaaggcttctgtgcctcatacaaccacccataaagctggattagggctttctctggggacac-ccttgccctgtgccacacttccattagtgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTAAGGCACACATTTTGTCTCAGGAACTACGTATTGAATAAATAAAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405211 180 - 106955855 gaaaggcttctgtgcctcatacaaccaccgataaagctggattagggctttctctggggacac-ccctgccctgtgccacacttccattagcgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTAAGGCACACATTTTGTCTCAGGAAATACGTATTGAATAAATAAAT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60713190 180 +  64156825 gaaaggcttctgtgtctcatacaaccacccataaagctggattagggctttctctggggacac-acatgccctgtgacacacttccattagtgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTAAAGCACACATTTTGTCTCAGGAACTACGTATTGAATGAATGAAT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55871397 180 +  59248254 gaaaggcttctgtgtctcatacaaccacccataaagctggattagggctttctctggggacac-acatgccctgtgacacacttccattagtgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTAAAGCACACATTTTGTCTCAGGAACTACGTattgaatgaatgaat
i macFas5.chr19                 C 0 I 312
s papAnu2.chr19                  47960154 180 +  51301725 GAAAGGCTTCTGTGTCTCATACATCCACCCATAAAGCTGGATTAGGGCTTTCTCTGGGGACAC-ACATGCCCTGTGACACACTTCCATTAGTGCACATATCCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTAAAGCACACATTTTGTCTCAGGAACTAcgtattgaatgaattaat
i papAnu2.chr19                 C 0 I 306
s chlSab2.chr6                   47660817 180 +  50890351 gaaaggcttctgtgtctcatacaaccacccataaagctggattagggctttctctggggacat-acatgccctgtgccacacttccattagtgcacatatcCCCCATGA------ATTGTGCACACCAGCAGGGTCTAGAGTAAAGCACACATTTTGTCTCAGGAACTACGTATTGAATGAATGAAT
i chlSab2.chr6                  C 0 I 306
s calJac3.chr22_GL285922_random     69700 186 +    138250 aaaaggctcctgtgcctcatactatcaaccataaagccagattagggctttctctggggatacaccttgccctgaaccacacttccattagtgtacatat-ctccatgaattatgattgtGCACACCAGCAGGGTCTAGAGTGAGGTACCAATTTTGTGTCAGGAACTATGTATTGAATGAATAAAT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20145767 483 - 122678785 I

a score=31004.000000
s hg38.chr19_GL949751v2_alt        988600 14 +   1002683 taattacttttttt-----------
s panTro4.chr19                  59982867 13 +  63644993 TA-TTACttttttt-----------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936395 14 +  60714840 TAACTACttttttt-----------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405391 14 - 106955855 TAACTACttttttt-----------
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60713370 14 +  64156825 TAATTACTTTTTTT-----------
i rheMac3.chr19                 C 0 I 343
s macFas5.chr19                  55871889 14 +  59248254 TAATTACttttttt-----------
i macFas5.chr19                 I 312 C 0
s papAnu2.chr19                  47960640 14 +  51301725 taattacttttttt-----------
i papAnu2.chr19                 I 306 C 0
s chlSab2.chr6                   47661303 14 +  50890351 TAATTACttttttt-----------
i chlSab2.chr6                  I 306 C 0
s calJac3.chr22_GL285922_random     69886 21 +    138250 ----TACtttttttttttttttttt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20145767 483 - 122678785 I

a score=88516.000000
s hg38.chr19_GL949751v2_alt        988614 35 +   1002683 gagacaaggtcttgctctgtcacccaggctggagt
s panTro4.chr19                  59982880 35 +  63644993 gagacaaggtcttgctctgtcacccaggctggagt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936409 35 +  60714840 gagacaaggtcttgctctgtcaccctggctggagt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405405 35 - 106955855 gagacaaggtcttgctctgtcacccaggctggagt
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55871903 35 +  59248254 gagacaaggtcttgctctgtcgcccaggctggagt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47960654 35 +  51301725 gagacaaggtcttgctctgtcgcccaggctggagt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47661317 35 +  50890351 gagacaaggtcttgctctgtcacccaggctggagt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     69907 35 +    138250 gaaacaagatcttactctgtcacccaggctggagt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20145767 483 - 122678785 I
e rheMac3.chr19                  60713384 343 +  64156825 I

a score=787462.000000
s hg38.chr19_GL949751v2_alt        988649 262 +   1002683 gcagtggtgcaatcgtggctcactgta-ccttgacctcccaggttcaagcaatcctcccacctcagcctcccaagcagctaggaccacagatgcaggccactatgcctggctaatttttaattttttttttggtagggatggaatctccctatgttgcccaggctggtttcaaactcctaggctcaagggatcctcctgcctctgcttcccaaagtactgggactataggtgtgagacgccacactcagcctcattatttaat
s panTro4.chr19                  59982915 261 +  63644993 gcagtggtgcaatcgtggcttattgta-ccttgacctcccaggttcaagcaatcctcccacctcagcctcccaagcagctaggaccacagatgcaggccactatgcctggctaatttaaaattttttttt-ggtagggatggaatctccctatgttgcccaggctggtttcaaactcctaggctcaagggatcctcctgcctccgcttcccaaagtactgggactataggtgtgagacaccacactcagccTCATTGTTTAAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936444 262 +  60714840 gcagtgatgcaatcgtggctcactgtagccttgacctcccaggatcaagcgatcctcccacctcagcctcccaagcagctaggatcacaaatgcatgccactatgcctggctaatttttaaatttttttt-tgtagggatggaatctccctatgttgcccaagctggtttcaaactcctaggctcaagggatcctcctgcctccgcttcccaaagtactgggcctataggtgtaagacaccacattcagccTCATTATTTAAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405440 261 - 106955855 gcagtggtgcaatcatagctcactgtagccttgacttcccaggctcaagcaatcctcccacctcagcctcccaagcagctaggaccacaaatgcatgccactatgcctggctaatttttaaatttttttt--gtagggatggaatctccctatgttgcccaggctggtttcaaactcctaggctctagggatcctcctgcctccgcttcccaaagtactgggactataggtgtgagacaccacagtcagccTCATTATTGAAT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60713727 261 +  64156825 gcagtggtgcaatcatggctcactgtagccttgacttcccaggctcaagcaatcctcccacctcagcctcccaagcagttaggaccacaagtgcatgccactgtgcctggctaatttttaaattattttt--gtagggatggaatcttcctatgttgcccaggctggtttcaaactcctaggctcaagggatcctcctgcctccgcttcccaaagtaccgggactataggtgtgagacatcacactctgccTCATTATTTAAT
i rheMac3.chr19                 I 343 C 0
s macFas5.chr19                  55871938 261 +  59248254 gcagtggtgcaatcatggctcactgtagccttgacttcccaggctcaagcaatcctcccacctcagcctcccaagcagttaggaccacaagtgcatgccactgtgcctggctaatttttaaattattttt--gtagggatggaatcttcctatgttgcccaggctggtttcaaactcctaggctcaagggatcctcctgcctccgcttcccaaagtaccgggactataggtgtgagacatcacactctgcctcattatttaat
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47960689 261 +  51301725 gcagtggtgcaatcatggctcactgtagccttgaattcccaggctcaagcaatcctcccacctcagcctcccaagcagttaggaccacaagtgcatgccactacacctggctaattttaaaattattttt--gtagggatggaatcttcctatgttgcccaggctggtttcaaactcctaggctcaagggatcctcctgcctccgcttcccaaagtaccgggactataggtgtgagacaTCACACTCTGCGTCATTATTTAAT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47661352 261 +  50890351 gcagtggtgcaatcatggctcactgtagccttgacttcccaggctcaagcaatcctcccacctcagcctcccaagcagttaggaccacaagtgcatgccactatgcctggctaatttttaaattattttt--gtagggatggaatcttcctatgttgcccaggctggtttcaaactcctaggctcaagggatcctcctgcctccgcttcccaaagtaccgggactataggtgtgagacatcacactctgccTCATTATTTAAT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     69942 261 +    138250 gcagtggtgcaatcacagctcactgcagccttgccctcccaggctcaagcaatcctcccacctcagtctcccaagtagctagaaccacaagtgcgtgccactatgcctggctaatttttagatttcttaa--gtagagatggaatctccctatgctgcccaggctggtttcaaactcctaggctcaagtgatcctcctgccttagcttcccaaagtactgggactataggtgtgagccaccacactcagccTAATTATTTCAT
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20145767 483 - 122678785 I

a score=370754.000000
s hg38.chr19_GL949751v2_alt        988911 108 +   1002683 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCC-ATCTAATTTATAACCTCCCTCCTTCTCAAGAACATGCCTCAGCTCCCATTGCCAGGGAATCTGACCTTTCTCC
s panTro4.chr19                  59983176 109 +  63644993 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTAATTTATAACCTCCCTCCTTCTCAAGAACATGCTTCAGCTCCCATTGCCAGGGAATCTGACCTTTCTCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936706 109 +  60714840 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTAATTTATAACCTCCCACCTTCTCAAGAACATGCCTCAGCTCCCATTGCCGGGGAATCTGACCTTTCATC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405701 109 - 106955855 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTAATTTATAACCTCCCTCCTTCTCAAGAACATGCCTCAGCTCCCGTTGCCAGGGAACCCGACCTTTCTCC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60713988 109 +  64156825 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTAATTTACAACCTTCCCCCTTCTCAAGAGCATGCCTCAGCTCCCATTGGCAGAGAATCTGACCTTTCTCC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55872199 109 +  59248254 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTAATTTATAACCTCCCCCCTTCTCAAGAACATGCCTCAGCTCCCATTGGCAGGGAATCTGACCTTTCTCC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47960950 109 +  51301725 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTAATTTATAACCTCCCCCCTTCTCAAGAACATGCCTCAGCTCCCATTGGCAGGGAATCTGACCTTTCTCC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47661613 109 +  50890351 ATGTAAGTAGCTATATCTCTCTGAGACCCAGCCCCCATCTGATTTATAACCTCCCCCCTTCTCAAGAACATGCCTCAGCTCCCACTGGCAGGGAATCTGACCTTTCTCC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     70203 109 +    138250 ATGTAAGTAGCTTTATCGCTCTGAGACCCAGTCCCCATCTAATTTATAACCTCCCCGCTTCTCAAGAACGTGCTTTAGCTCCCATTGTCAGGGTATCTGACCTTTCTCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20146250 101 - 122678785 ATGTAAATAAGTATATCTTCCTGAGACCCAGCTCCCACCTTATTTATATCTGCCCCCC--------AAACTGCCATATCTCCTATTTCCTGTGCCTGTGACTGTCCACC
i canFam3.chr1                  I 483 I 9

a score=391103.000000
s hg38.chr19_GL949751v2_alt        989019 134 +   1002683 TTGTC-ATAGGAt------tttttttttttttt----gagtcagaatctcagtcagtcacccagcctggagtgca-tggcgcaat---ggctcgctgcaacctctgcctcccgggttcaagtgattctcctgcctcagtctccctagta
s panTro4.chr19                  59983285 138 +  63644993 TTGTC-ATAGGAt------ttttttttttttttttttgagtcagaatctcagtcagtcgcccagcctggagtgca-tggcacaat---ggctcgctgcaacctctgcctcccgggttcaagtgattctcctgcctcagtctccctagta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936815 138 +  60714840 TTGTC-ATAGGAt------ttttttttttttttttttgagtcagaatctcagtcagtcacccagcctggagtgca-tggcgcaat---ggctcgctgcaacctctgcctcccgggttcaagcaattctcctgcctcagtctccctagta
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405810 138 - 106955855 TTGTC-ACGGGAt------ttttttttttttttttttgagtcagaatctcagtcagtcacccagcctggagtgca-tggcgcaat---ggctcgctgcaacctctgcctcctgggttcaagcaattctcctgcctcagtctccctagta
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60714097 138 +  64156825 TTGTC-ATAGGAA------ttttttttttttttttttgagtcagaatctcagtcagtcacccagcctggagtgca-tggcacgat---gactcgctgcaccctctgcctcccaggttcaagcgattctcctgcctcagtctccctagta
i rheMac3.chr19                 C 0 I 427
s macFas5.chr19                  55872308 136 +  59248254 TTGTC-ATAGGAA--------ttttttttttttttttgagtcagaatctcagtcagtcacccagcctggagtgca-tggcacgat---gactcgctgcaccctctgcctcccaggttcaagcgattctcctgcctcagtcgccctagta
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47961059 144 +  51301725 TTgtc-ataggaattttttttttttttttttttttttgagtcagaatctcagtcagtcacccagcctggagtgca-tggcacgat---gactcgctgcaacctctgcttcccaggttcaagtgattctcctgcctcagtctccctagta
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47661722 133 +  50890351 TTGTC-ATAGGAA-----------tttttttttttttgagtcagaatctcagtcagtcacccagcctggagtgca-tggcacgat---gactcactgcaccctctgcctcccaggttcaagtgattctcctgcctcagtctccctagta
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     70312 141 +    138250 TTGTCGATAGGAA--------ttttttttttttttttgaaacagaatctcactcagtcacccagcctggagtgcagtggcatgatctcggctcactgaaacctctgcctcctggtttcaggcaattctcctgcctcagctttcctagta
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20146351   9 - 122678785 I

a score=332129.000000
s hg38.chr19_GL949751v2_alt        989153 146 +   1002683 gctgggactacaa--gcgcacgccaccacacccagctacttttgtagagatggggtttcaccatgttggctaagctggtctcgaactcctgatctcaagtgat-----------ggcctcccaaaatgctgggtaacaggtgtgaggcaccacatccgg
s panTro4.chr19                  59983423 146 +  63644993 gctgggactacaa--gcgcacgccaccacacccagctacttttgtagagatggggtttcaccatgttggctaagctggtctcgaactcctgatctcaagtgat-----------ggcctcccaaaatgctgggtaacaggtgtgaggcaccacacccgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56936953 146 +  60714840 gctgggactacaa--gtgcacgccaccactcccgtctacttttgtagagatggggtttcaccatgttggctaagctggtctcgaactcctgatctcaagtgat-----------ggcctcccaaaatgctgggtagcaggtgtgaggcaaaacacccgg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103405948 146 - 106955855 gctgggactacaa--gtgcacgccaccacacccggctacttttgtagagatggggtttcaccatgttggctaagctggtctcgaactccagatctcaagtgat-----------ggcctcccaaaatgctgggtaacaggcgtgaggcaccacacgcgg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55872444 148 +  59248254 gctgggactacaagtgcgcacgccaccacacccggctacttttgtagagatagcatttcaccgtgttggctaagctggtcttgaattcctgatctcaagtgat-----------ggcctcccaaaatgctgggtagcaggtgcgaggcaccgcacccgg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47961203 148 +  51301725 gctgggactacaagtgcgcacgccaccacacccggctacttttgtagagatagaatttcaccgtgttggctaagctggtcttgaattcctgatctcaagtgat-----------ggcctcccaaaatgctgggtagCAGGTGCgaggcaccgcacctgg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47661855 146 +  50890351 gctgggactacaa--gcgcacgccaccacacccggctacttttgcagagatagcgtttcaccgtgttggctaagctggtctcgaattcctgatctcaagtgat-----------ggcctcccaaaatgctgggtagcaggtgcaaggcaccgcacctgg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     70453 157 +    138250 gctgggactacag--gcgcacatcaccacacctggatacttttgtagagacagggtttcaccatgttggccaggctggtcttgaactcctgatctcaagtgatccacccacctgaacctcccaaaatgctgggtaacaggcatgagccactgcacccag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20146351   9 - 122678785 I
e rheMac3.chr19                  60714235 427 +  64156825 I

a score=447029.000000
s hg38.chr19_GL949751v2_alt        989299 200 +   1002683 cTGTCATAGGAATTTGTCAGCAAATCCTACAGACTAGAGGATGTGTGTTGGGTGGTG----TGGGGGTGGGGATAACGGAGGAGATGGGG------------------------GG---TG----AGCTCTTCAAGCCCCAGGGGAGAATTCTGTTCCGTTCCTGGGACATCCCAGGTGAGAGGGAAGAAAGGCCAG-CCCCCCAAGAC--AGCTATCCCAGACTGGG-ACAGAGGCAA
s panTro4.chr19                  59983569 200 +  63644993 cTGTCATAGGAATTTGTCAGCAAATCCTACAGACTAGAGGATGTGTGTTGGGTGGTG----TGGGGGTGGGGATAACGGAGGAGATGGGG------------------------GG---TG----AGCTCTTCAAGCCCCAGGGGAGAATTCTGTTCCGTTCCTGGGACATCCCAGGTGAGAGGAAAGAAAGGCCAG-CCCCCCAAGAC--AGCTATCCTAGACTGGG-ACAGAGGCAA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56937099 202 +  60714840 ctGTCATAGGAATTTGTCAGCAAATTCTACAGACTAGAGGATGTGTGTTGGGTGGTA----TGGGGGTGGGGATAACGGAGGAGATGGGG-----------------------AGG---TG----AGCTCTTCAAGCCCCAGGGGAGAATTCTGTTCCGTTCCTGGGACATCCCAGGTGAGAGGGAAGAAAGGCCAACCCCCCCAAGAC--AGCTATCCCAGACTGGG-ACAGAGGCAA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103406094 200 - 106955855 cTGTCATAGGCATTTGTCAGCAAATCCTACAGACTAGAGGGCGTGTGTTGCATGGTG----TGGGGGTGGGGATAACGGAGGAGATGGG-------------------------GG---TG----ACCTCTTCAAGCCCCAGGGGAGAATTCTGTTCCATTCCTGGGACATCCCAGGTGAGAGGGAAGAAAAGCCAG-CCCCCCAAGAC--AGCTATCCCAGACTGGGCATAGAGGCAG
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55872592 205 +  59248254 cTGTCATAGGAATTTGTCAGCGAGTCCTACAGACTGGAGGTTACGCGTGGGGTGGTG----TAGGGGTGGGGATAACGGAGGAGATGGGGG--------------------AGGGG---TG----AACTCTTCAAGCCCCAGGGGAGAAGTCTGTTCCATTCCTGGGACATCCTAGGTGACAGGGAAGAAAGTCCAG-CCCCCCAAGAC--AGCTATCCCAGACTGGGCATAGAGGCAA
i macFas5.chr19                 C 0 I 477
s papAnu2.chr19                  47961351 205 +  51301725 ctgtcATAGGAATTTGTCAGCAAATCCTACAGACTGGAGGTTACGCGTGGGGTGGTG----TAGGGGTGGGGATAACggaggagatggggg--------------------agggg---tg----aACTCTTCAAGCCCCAGGGGAGAAGTCTGTTCCATTCCTGGGACATCCTAGGTGACAGGGTAGAAAGTCCAG-CCCCCCAAGAC--AGCTATCCCAGACTGGGCATAGAGGCAA
i papAnu2.chr19                 C 0 I 479
s chlSab2.chr6                   47662001 205 +  50890351 cTGTCATAGGAATTTGTCAACAAATCCTACAGACTGGAGGTTACGTGTGGGGTGGTG----TAGGGGTGGGGATAACGGAGGAGATGGGGG--------------------AGGGG---TG----AACTCTTCAAGCCTCAGGGGAGAAGTCTGTTCCATTCCTGGGACATCCTAGGTGACAGGGAAGAAAGTCCAG-CCCCTCAAGAC--AGCTATCCCAGACTGGGCATAGAGGCAA
i chlSab2.chr6                  C 0 I 478
s calJac3.chr22_GL285922_random     70610 223 +    138250 cTGTCATATGAATTTATTAGCAAATCCTACGGACTGGAGGATATGTGTTGG--GGT-------GGGGTGGGGATAAGAGAAGAGATGGGAATGGTTTCAAACATGACACTCGGGGG---AGTCTCAGCTCTTCAAGCCCCAGTGGGGAATTCTGTTCCATTTCGGGGACCTCCTAGGTGAGAGGAAAGAAAGTCCAG--CCCCCATGAC--AGCTATCCCAGACTGGGCATAAAGGCAA
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20146360 231 - 122678785 CCATCCTAGGAATTCATCAGCAAACCCTACA-ACTGGGGAGT-CGGGCTGAGCTGTGTGTTTGGCAAGGAGGAGAAGGAAAGAGGTGGGG-TGCTTTTAGAGATGATATATGGGGAATCTG----AGCTGATCAGGCTCCAGTGGGGAATTGTGTGTGCTGCTGGGGCTCCTCCAACCCAGAGAATAAACAATCCAA-TCGCCAATGACAAAGCTATCCGAGTTTTGGGACAGAAGCAG
i canFam3.chr1                  I 9 C 0
e rheMac3.chr19                  60714235 427 +  64156825 I

a score=1198817.000000
s hg38.chr19_GL949751v2_alt        989499 365 +   1002683 ACCCTGA-CCACAGAGCCCTGTCACTCACCCAAGAACAGGTGCCAATGACAGAATAGCCAGGCCGAGGGGGG-AGAGAGGTGCTTCGGTGATGGATTTCCCTGGTGACTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACTGTGCAGGGGTGGACACTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAGGGAGGGGCCTCCTTTGCGGCCAGAGAAGGAGGAAAGAGGCCCTGGGCCCTGGGACTTGGGACTTGGGTGGAGGCTCGGGTTTCGG--------TCTCACCTGCTGCTCCAGACCATGG----CCTGGAGG-GCCGCCTGCGCCACC---CCCAAAGCAATGAGAT
s panTro4.chr19                  59983769 358 +  63644993 ACCCTGA-CCACAGAGCTCTGTCACTCACCCAAGAACAGGTGCCAATGACAGAATAGCCAGGCCGAGGGGGG-AGAGAGGTGCTTCGGTGATGGATTTCCCTGGTGACTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGACTCAGACTGTGCAGGGGTGGACACTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAGGGAGGGGCCTCCTTTGCGGCCACAGAAGGAGGAAAGAGGCCCTGGGCCCTGGGACTTGGG-------TGGAGGCTCGGGTTTCGG--------TCTCACCTGCTGCTCCAGACCATGG----CCTGGAGG-GCCGCCTGCGCCACC---CCCAAAGCAATGAGAT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56937301 358 +  60714840 ACCCTGA-CCACAGAGCCCTGTCACTCACCCAAGAACAGGTGCCAATGGCAGAACAGCCAGGCTGAGGGGGG-AGAGAGGCGCTTCGGTGATGGATTTCCCTGGTGACTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACTGTGCAAGGGTGGACACTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAGGGAGGGGCCTCCTTTGTGGCCAGAGAAGGAGGAAAGAGGCCCTGGGCCCTGGGACTTGGG-------TGGAGGCTCGGGTTTCGG--------TCTCACCTGCTGCTCCAGACCATGG----TCTGGAGG-GCCGCCTGCGCCACC---CCCAAAGCAATGAGAT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103406294 355 - 106955855 ACCCTGA-CCACAGAGCCCTGTCATTCACCCAAGAACAGGTACCAATGACAGAATAGCCAGGCAGAGGGGGG-AGAGAGGGGCTTCGGTGATGGATTTCCCTGGTGACTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACTGTGCAGGGGTGGACACTTTGACTGGTATTTGGGAGGTATTTGCTGTGGGTTACAGGGAAGGAGGGGCCTCCTTTGCGGCCAGAGA---AGGAAAGAGGCCCTGGGCCCTGGGACTTGGG-------TGGAGGCTCCGGTTTCGG--------TCTCACCTGCTGCTCCAGACCATGG----CCTGGAAG-GCCGCCTGCGCCACC---CCCAAAGCAATGAGAT
i nomLeu3.chr10                 C 0 I 357
s rheMac3.chr19                  60714662 359 +  64156825 aCCCTGA-CCACAGGGCCCTGTCACTCACCCAAGAACAGCTGCCAATGACAGAATAGCCAGGCCGAGGGGGCAAGAGAGGTGCTTCGCTGATGGATTTCCCTGGTGCGTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACTGTGCAGGGGTGGACACTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAGGGAGGGGCCTGCTTTGCGGCCAGAGAAGGAGGAAAGAGGCCCTGGGCCCTGGGACTAGGG-------TGGAGGCTCGGGTTTCGG--------TCTTACCTGCTGCTCCAGACCATGG----CCTGGAGG-GCTGCCTGCGccacc---cccaaagcaaggagat
i rheMac3.chr19                 I 427 I 6
s macFas5.chr19                  55873274 359 +  59248254 aCCCTGA-CCACAGGGCCCTGTCACTCACCCAAGAACAGCTGCCAATGACAGAATAGCCAGGCCGAGGGGGGAAGAGAGGTGCTTCGCTGATGGATTTCCCTGGTGCGTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACTGTGCAGGGGTGGACTCTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAGGGAGGGGCCTGCTTTGCGGCCAGAGAAGGAAGAAAGAGGCCCTGGGCCCTGGGACTAGGG-------TGGAGGCTCGGGTTTCGG--------TCTTACCTGCTGCTCCAGACCACGG----CCTGGAGG-GCTGCCTGCGCCACC---CCCAAAGAAAGGAGAT
i macFas5.chr19                 I 477 I 446
s papAnu2.chr19                  47962035 359 +  51301725 ACCCTGA-CCACAGGGCCCTGTCACTCACCCAAGAACAGGTGCCAATGACAGAATAGCCAGGCCGAGGGGGGAAGAGAGGTGCTTTGGTGATGGATTTCCCTGGTGAGTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACTGTGCAGGGGTGGACACTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAGGGAGGGGCCTGCTTTGcggccagagaaggaggaaagaggccCTGGGCCCTGGGACTAGGG-------TGGAGGCTCGGGTTTCGG--------TCTTACCTGCTGCTCCAGACCATGG----CCTGGAGG-GCCGCCTGCGCCACC---CCCAAAGCAAGGAGAT
i papAnu2.chr19                 I 479 I 6
s chlSab2.chr6                   47662684 359 +  50890351 aCCCTGA-CCACAGGGCCCTGTCACTCACCCAAGAACAGGTGCCAGTGACAGAATAGCCAGGCCAAGGGGGGAAGAGAGGTGCTTCGGTGATGGATTTCCCTGGTGAGTTGCCAAGACAGGGCTTTACTGCCTCCGCCCTGGACTGGCTGAGTCAGACCGTGCAGGGGTGGACACTTTGACTGGTATTTGGGAGGCATTTGCTGTGGGTTACAGAGAAGGAGGGGCCTGCTTTGCGGCCAGAGAAGGAGGAAAGAGGCCCTGGGCCCTGGGACTAGGG-------TGGAGGCTCGGGTTTCGG--------TCTTACCTGCTGCTCCAGACCATGA----CCTGGAGG-GCCGCCTGCGCCACC---CCCAAAGCAAGGAAAT
i chlSab2.chr6                  I 478 I 6
s calJac3.chr22_GL285922_random     70833 339 +    138250 ACCCTGA-ACACAGAGCCCTGTCACTCACCCAGGAACAGGAGCT-GTGACAGAATAGCCAGGC----GGGGG----GAAGTTCCTCAGTGATGGGTCTCCCTGGTGAGTTGCCAAGATAGGGCTTCGCTGCCTCCGCCCTGGACCGGCTGAGTCACACCGTGCAGGGGTGGACACTGTGC----TATTTGGGAACCATGTGCTGTGGGTTACAGAGAGGGAGGGGCCTCCTTTGTGGCCAGAGAAGGAGGAAAGA-------GGCCCTGGGACTAGGG-------TGTAGGCTCCGGTTTCGG--------TCTTACCTGCTGCTCCAGACCATGG----CCTGGAGG-GCCGCCTACAccacc---cccaaagcaaggaaat
i calJac3.chr22_GL285922_random C 0 I 6
s canFam3.chr1                   20146591 366 - 122678785 ACTCAGACCCACAGAGTCCTAAAGCTCACTTAATGAAAGG---CACTGACTATGTTGGCAGACAAGGGGTTG-AAAAGGATTCTCAGGTGGCTGGTTGCCCTGGTGAGTCTCCAAGACCAGGGTTCACTGCCTCCACCCGGGATGTACTGAGTCACGCTGTACAGGGGTGGGAGCCTCCACTGGTATTTGGGAGCCACTTGCTATGGTTTGAAGAAAGGGA-GGGCCTCCTTTGTGGCCAGAGAAGGAGGAAGGAGGCCGTGGG-CCTAGAACTAGGG-------CGGAGGCTCTGGTTTCGATCTCACCTTCTCACCTGCTGCTTCAGACCTCAGAGCACCTGAAGGCAGGGACTAGGGCACCTGTCCCTGGGCCCTG----
i canFam3.chr1                  C 0 C 0

a score=178018.000000
s hg38.chr19_GL949751v2_alt        989864  77 +   1002683 agcccctcctccctcagacccaggag-tccaggccc-ccagcccctcctccctca-------------------------------------------gacccaagagtccag-------------------------------------------------------------------------------------------a-ccccagcc
s panTro4.chr19                  59984127 151 +  63644993 agcccctcctccctcagacccaggag-tccaggccc-ccagcccctcctccctca-------------------------------------------gacccaggagtccaggcccccagcccctcctccctcagacc-----------------cagaagtccaggcccccagcccctcctccctcagacccaagagtcgaga-ccccagcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56937659 150 +  60714840 agcccctcctccctcagacccagaag-tccaggccc-caagcccctcctccctcagacccagaagtccaggccccagcccctcctccctcagacccaggagtccaggccccaa-------------------------------------------------------------gcccctcctccctcagacccaagagtccaga-caccagcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103407006  78 - 106955855 agctcctcctccctcagacccaggag-tccaggtcc-ccagctcctcctccctca-------------------------------------------gacccaggagtccag------------------------------------------------------------------------------------------gc-ccccagcc
i nomLeu3.chr10                 I 357 C 0
s rheMac3.chr19                  60715027 150 +  64156825 tgcccctcctccctcagacccaggag-tccaggccc-ccagcccctcctccctca-------------------------------------------gacccagaagtccagatccccagcccctcctccctcagacccagaagtccaggtccca------------------gcccctcctccctcagacccagaagtccagg-tcccagcc
i rheMac3.chr19                 I 6 C 0
s macFas5.chr19                  55874079  76 +  59248254 agtccctcctccctcagacccagaag-tccagg-cc-ccagcccctcctccctca-------------------------------------------gacccaggagt-------------------------------------------------------------------------------------------ccagg-tcccagcc
i macFas5.chr19                 I 446 C 0
s papAnu2.chr19                  47962400  79 +  51301725 tgtccctcctccctcagacccaggag-tccaggccc-ccagcccctcctccctca-------------------------------------------gacccagggat------------------------------------------------------------------------------------------tccaggcccccagcc
i papAnu2.chr19                 I 6 C 0
s chlSab2.chr6                   47663049  77 +  50890351 Tgcccctcctccctcagacccaggag-tccagaccc-ccagcccctcctccctca-------------------------------------------gacccaggagt-------------------------------------------------------------------------------------------ccagg-tcccagcc
i chlSab2.chr6                  I 6 I 235
s calJac3.chr22_GL285922_random     71178  78 +    138250 agcccctcctcccttagacccaggag-tccagggcc-ccagcccctgcttcctca-------------------------------------------gacccaggagtccag------------------------------------------------------------------------------------------gg-ccccagcc
i calJac3.chr22_GL285922_random I 6 C 0
s canFam3.chr1                   20146957  77 - 122678785 ---CCCTCCTCCCTCAGACTCTGCAGATCCTGGTCCACCAGCACCTCCTCCCTCA-------------------------------------------GACCCTGGAGTCCTG------------------------------------------------------------------------------------------GC-CCCCAGCA
i canFam3.chr1                  C 0 C 0

a score=76335.000000
s hg38.chr19_GL949751v2_alt        989941 19 +   1002683 cctcctccctcagacccaa
s panTro4.chr19                  59984278 19 +  63644993 cctcctccctcagacccaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56937809 19 +  60714840 cctcctccctcagacccaa
i ponAbe2.chr19                 C 0 I 1
s nomLeu3.chr10                 103407084 19 - 106955855 cctcctccctcagacccaa
i nomLeu3.chr10                 C 0 I 1
s rheMac3.chr19                  60715177 19 +  64156825 cctcctccctcagacccaa
i rheMac3.chr19                 C 0 I 1
s macFas5.chr19                  55874155 19 +  59248254 cctcctccctcagacccaa
i macFas5.chr19                 C 0 I 1
s papAnu2.chr19                  47962479 19 +  51301725 cctcctccctcagacccag
i papAnu2.chr19                 C 0 I 1
s chlSab2.chr6                   47663361 19 +  50890351 cctcctccctcagacccag
i chlSab2.chr6                  I 235 I 1
s calJac3.chr22_GL285922_random     71256 19 +    138250 cctcctccctcagactcag
i calJac3.chr22_GL285922_random C 0 I 216
s canFam3.chr1                   20147034 19 - 122678785 CCTCCTCCCTCAGACCTGG
i canFam3.chr1                  C 0 I 6

a score=29859.000000
s hg38.chr19_GL949751v2_alt        989960 13 +   1002683 aggcctcggaccc
s panTro4.chr19                  59984297 13 +  63644993 aggcctcggaccc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56937829 13 +  60714840 aggcctcggaccc
i ponAbe2.chr19                 I 1 C 0
s nomLeu3.chr10                 103407104 13 - 106955855 aggccTTGGAACC
i nomLeu3.chr10                 I 1 C 0
s rheMac3.chr19                  60715197 13 +  64156825 AGGCCTCAGAACC
i rheMac3.chr19                 I 1 C 0
s macFas5.chr19                  55874175 13 +  59248254 aggcctcagaccc
i macFas5.chr19                 I 1 C 0
s papAnu2.chr19                  47962499 11 +  51301725 agtc--cagaccc
i papAnu2.chr19                 I 1 M 905
s chlSab2.chr6                   47663381 11 +  50890351 agtc--cagaccc
i chlSab2.chr6                  I 1 C 0
s calJac3.chr22_GL285922_random     71491 13 +    138250 AGGCCTCGGACTC
i calJac3.chr22_GL285922_random I 216 C 0
s canFam3.chr1                   20147059 13 - 122678785 AGGTCCCTGACTC
i canFam3.chr1                  I 6 C 0

a score=681512.000000
s hg38.chr19_GL949751v2_alt        989973 256 +   1002683 ATACCAAATGCTTCTATGAGATAGTTTTCTCCCCTTGTTCATGAAGAAATGAGCCCAGGCCCAGTCAGATCTGCATCTGTGTCAC--AGCCCAGGGCCACtgtaaccttaggctactgacttccct-ctctgagcctctgttttctc--ctgtcaatg--------------------------------gggCAAGGGGTCTGCTCCTTCCCTCAAACCCCAACTCAGGTACAGTCAAGCACAGAAAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
s panTro4.chr19                  59984310 256 +  63644993 acaCCAAATGCTTCTATGAGATAGTTTTCTCCCCTTGTTCATGAAgaaatgagcccaggcccagtcagatctgcatctgtgtcac--agcccagggccactgtaaccttaggctactgacttccct-ctctgagcctctgttttctc--ctgtcaatg--------------------------------gggCAAGGGGTCTGCTCCTTCCCTCAAACCCCAACTCAGGTACGGTCAAGCACAGAAAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56937842 258 +  60714840 acaCCGAATGCTTCTATGAGATAGTTTTCTCCACTTGCTCATGAAGAAATGAGCCCAGGCCCAGTCAGATCTGCATCTCTGTCAC--AGCCCAGGGCCACtgtaaccttaggctactgacttccct-ctctgagcctctgttttctcctctgtcaatg--------------------------------gggCAAGGGGTCTGCTCCTTCCCTCAAACCCCAACTCAGGTAGGGTCAAGCACAGAAAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103407117 252 - 106955855 ACACCGAATGCTTCTATGAGATAGTTTTCTCCACTTGCTCATGAAGAAATGA------GCCCAGTCAGATCTGCATCTGTGTCAC--AGCCCAGGGCCACtgtaaccttaggctactgacttccct-ctctgagcctctgttttctcctctgtcaatg--------------------------------gggCAAGGGGTCTGCTCCATCCCTCAAACCCCAACTCAGGTAGGGTCAAGCACAGAAAATACCTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60715210 258 +  64156825 ACACCGAATGCTTCTATGAGATAGTTTTCTCCACTTGCCCATGAAGAAATGAGCCCAGGCCCAGTCAGATCTGCATCTGTGTCAC--AGCCCAGAGCCACTGTAACTTTCGGCTACTGACCTCCCC-CTCTGAGCCTCTGTTTTCTCCTCTGTCCATG--------------------------------GGGCAAGGGGTCTGCTCCTTCCCTCAAACACCAACCCAGGTAGGGTCAAGCACAGGAAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55874188 258 +  59248254 acaCCGAATGCTTCTATGAGATAGTTTTCTCCACTTGCCCATGAAGCAATGAGCCCAGGCCCAGTCAGATCTGCATCTGTGTCAC--AGCCCAGAGCCACTGTAACTTTCGGCTACTGACCTCCCC-CTCTGAGCCTCTGTTTTCTCCTCTGTCCATG--------------------------------GGGCAAGGGGTCTGCTCCTTCCCTCAAACACCAACCCAGGTAGGGTCAAGCACAGGAAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47663392 258 +  50890351 acaCCGAATGCTTCTATGAGATAGTTTTCTCCACTTGCCCATGAAGAAATGAGCCCAGGCCCAGTCAGATCTGCATCTGTGTCAC--AGCCCAGGGCCACtgtaaccttcggctactgacttcccc-ctctgagcctctgttttctcctctgtccatg--------------------------------gggCAACGGGTCTGCTCCTTCCCTCAAACCCCAACCCAGGTAAGGTCAAGCACAGAAAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGAAGCC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     71504 250 +    138250 ACACCGAGTGCATCTGTGAGGTGGTTTTCTCCACTTGCACATCAAGAAATGAGCCCAGGCCCAGTGAGATGTGCATCTGTGTCAC--AGCCCAGGGCCACtgtcacctgaggctactgacttccct-ctctgagc--ctgttttctcctctgtcagtg--------------------------------gggcaa-gggtctgctccctccctcaAACCCCAACCCAGGTAGGGTCAAGCACAG-AAATACTTGTGGCATGAATGTGATGAGAACACAGAATTGCAGC----
i calJac3.chr22_GL285922_random C 0 I 295
s canFam3.chr1                   20147072 280 - 122678785 CTATGGAACGCCTATATGAGG---------ACATTTGCACATGAAgaag-gggcctggtctttgtcagatctgcatttgtgtcacctggcccaggtccactgtgaccttgggctagtggcctccccactctgagcctctgtcttct---gtgcccgtggacaccaatcccagcactgcctgcctcacagagAGTAAGGGGTCTGCTCCTCTCTGCAGACCCCAACCCAGGCAGGACCAAGCTCAGAAGGTACTTGTGGCACGGATGGGATAAGGACCCAGCGTGGCAGAAGTT
i canFam3.chr1                  C 0 C 0
e papAnu2.chr19                  47962510 905 +  51301725 M

a score=1008274.000000
s hg38.chr19_GL949751v2_alt        990229 479 +   1002683 AAAGAAAGAGAAGCGTAAGGGCCCTCCTTCCA-CCCCTACCTCCCCCACCCGCTGCTACACGCACCAGGACCACCTGCTGGGTAGCCAGGAGCTCACAG-TC-TAGCCCCGCTGGCCACCCCTGCAGCCCCC-ATCCTTCACTCAGGCAGTTGCAGGGCCCAGAACACCCCT----ATCTTCTAGGA-TTGACACTGGCTGTCAAACTCATCCTTCAAGGTGATTCCTGGCCTGC----------------------CCTCCTCCTCCAGGCAGCCTGTCCTCCTCCTCCAGGCAGCCTGTCCTGACCCTCAGCAGCCTCTCCT-GGCCTTGGCAGAGCCCCTCGTGTCCTCCCTTGCAGCACGC-----ATGGGAAGAAAGGCCATCGTCCTC---GCCATTGCTAACAC-CAGCCTTGCGTTTCCTCTTTGCCAGGTACTGTATTGACAACTC----TCTATAACCTGACTTTATCCTCCCAATAAGCTGGGTGTGGTGggtggctcatgcctgtcatccca
s panTro4.chr19                  59984566 479 +  63644993 AAAGAAAGAGAAGTGTAAGGGCCCTCCTTCCA-CCCCTACCTCCCCCACCCGCTGCTACACACACCAGGACCACCTGCTGGGTAGCCAGGAGCTCACAG-CC-TAGCCCCGCTGGCCACCCCTGCAGCCCCC-ATCCTTCACTCAGGCAGTTGCATGGCCCAGAACACCCCT----ATCTTCTAGGA-TTGACACTGGCTGTCAAACTCATCCTTCAAGGTGATTCCTGGCCTGC----------------------CCTCCTCCTCCAGGCAGCCTGTCCTCCTCCTCCAGGCAGCCTGTCCTGACCCTCAGCAGCCTCTCCT-GGCCTTGGCAGAGCCCCTTATGTCCTCCCTTGCAGCATGC-----ATGGGAAGAAAGGCCATCGTCCTC---GCCATTGCTAACAC-CGGCCTTGCGTTTCCTCTTTGCCAGGTACTGTATTGACAACTC----TCTACAACCTGACTTTATTCTCCCAATAAGCTGGGTGTGGTGggtggctcatgcctgtcatccca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56938100 497 +  60714840 AAAGAAAGAGAAGCGTAAGGGCCCTCCTTCCA-CCCCTACCTCCCCCACCCGCTGCTACACACACCAGGACCACCTGCTGGGTAGCCAAGAGCTCACAG-CC-TAGCCCCACTGGCCACCCCTGCAGCCCCC-CTCCTTCACTCAGGCAGTTGCACGGCCCAGAACACCCCT----ATCTTCTAGGA-TTGACACTGGCTGTCAAACTCATCCTTCAAGGTGATTACTGGCCTGCCCTCCTCCTCCAGGCAGCCTGTCCTCCTCCTCCAGGCAGCCTGTCCTCCTCCTCCAGGCAGCCTGTCCTGACCCTCAGCAGCCTATCCT-GGCCTTGGCAGAGCCCCTCGTGTCCTCCCTTGCAGCACCC-----ATGGGAAGAAAGGCCATCGTCCTC---GCCGTTGCTAACAC-CGGCCTTGCGTTTCCTCTTTGCCAGGTACTGTATTGACAACTC----TCTACAACCTGACTTTATCCTCCCACCAAgctgggcgt----ggtggctcatgcctgtcatccca
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103407369 453 - 106955855 AAAGAAAGAGAAGCATAAGGGCCCTCCTTCTA-CCCCTACCTCCCCCACCCGCTGCTGCACACACCAGGACCACCTGCTGGGTAGCCAGGAGCTCACAGCCC-TAGCCCCGCTGGCCACCCCTGCAGCCGCC-CTCCTTCACTCAGGCAGTCTCATGGCCCAGAACACCCCT----ATCTTCTAGGA-TTGACACTGGCTGTCAAACTCATCCTTCAAGGTGATTCCTGGCCTGC----------------------CCTCCTCCTCCA-----------------------GCAGCCTGTCCTGACCCTCAGCAGCCTCTCCT-GGCCTTGGCAGAGCCCCTCGTGTCCTCCCTTGCAGCACGC-----ACGGGAAGAAAGGCCATCGTCCTC---GCCATTGCTAACAC-CGGCCTTGCGTCTCCTCTTTGCCAGATACTGTATTGACAACTC----TCTACAATCTGAGTTTATCCTCCCAATAAgctgggtat----gatggctcatgcctgtcattcca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60715468 456 +  64156825 AAAGAAAGAGAAGTATAAGGGCCCTCCTTCCACCCCCTACCTCTCCCACCTGCTGCTTCACACACCAGGACCACCTGCTGGGTAGCCAGGAGCTCACAG-CAGGAGCCCCGCTGGCCACCCCTGCAGCCCCC--TCCTTCATTCAGGCAGTTTCATGGCCTGGAACACTCCTC---ATCCTCTAGGATTTGACACTGGCTGTCAAACTCGTCCTTCAAAGTGATTCCTGGCCTGC----------------------CCTCCTCCTCTA----------------------GGCAGCCTGTCCTGACCCTCAGCAGCCTCTCCT-GGCCGTGGCAGAGCCCTTCGTGTCCTCCCTTGCACCACGC-----ACGGGAAGAAAGGCCATCATCCTC---GCCATTGCTAACAC-CGGCCTTGCGTTTCCTCTTTGCCAGGTACTGTATTGACAACTC----TCTACAACCTCACTTCATCCTCCTaataagctgggcgt----ggtggctcatgcctgtcatccca
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55874446 456 +  59248254 AAAGAAAGAGAAGTATAAGGGCCCTCCTTCCACCCCCTACCTCCCCCACCTGCTGCTTCACACACCAGGACCACCTGCTGGGTAGCCAGGAGCTCACAG-CAGGAGCCCCGCTGGCCACCCCTGCAGCCCCC--TCCTTCATTCAGGCAGTTTCATGGCCTGGAACACTCCTC---ATCCTCTAGGATTTGACACTGGCTGTCAAACTCGTCCTTCAAAGTGATTCCTGACCTGC----------------------CCTCCTCCTCTA----------------------GGCAGCCTGTCCTGACCCTCAGCAGCCTCTCCT-GGCTGTGGCAGAGCCCTTCGTGTCCTCCCTTGCACCACGC-----ACGGGAAGAAAGGCCATCATCCTC---GCCATTGCTAACAC-CGGCCTTGCGTTTCCTCTTTGCCAGGTACTGTATTGACAACTC----TCTACAACCTCACTTCATCCTCCTaataagctgggcgt----ggtggctcatgcctgtcatccca
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47663650 455 +  50890351 AAAGAAAGAGAAGCATAAGGGCCCTCCTTCCACCCCCTACCTCCCCCACCCGCTGCTTCACACACCAGGACCACCTGCCGGGTAGCCAGGAGCTCACAG-CC-TCGCCCTGCTGGCCACCCCTGCAGCCCCC--TCCTTCATTCAGGCAGTTTCATGGCCCGGAACACCCCTC---ATCCTCTAGGATTTGACACTGGCTGTCAAACTCGTCCTTCAAAGTGATTCCTGGCCTGC----------------------TCTCCTCCTCGA----------------------GGCAGCCTGTCCTGACCCTCAGCAGCCTCTCCT-GGCCGTGGCAGAGCCCTTCGTGTCCTCCCTTGCAGCACGC-----ACGGGAAGAAAGGCCATCATCCTC---GCCATTGCTAACAC-CGGCCTTGCGTTTCCTCTTTACCAGGTACTGTATTGACAACTC----TCTACAACCTCACTTCATCCTACTaataagctgggcgt----ggtggctcatgcctatcatccca
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     72049 429 +    138250 aaagaaagaaaAGCATAAGGGTGCTCCTTCCAACCCCCACCTGCCCCACGCCCTGCTGTACACG--AGGACCACCTACTAGGGA-CCGCAACCTAACAG-AC----GCCCACCCCCCACCCCAGCAGCCCTCCCTCCTCCACTCAGGCCGTTTCACGGCC-------CCCTT----GTCCTCTAGGATTTCACACTGGCCGTGAAGCTCGCCCTTCAAGTTGATCCCTGGCCTGC----------------------CCTCCTCCTCCA----------------------CGCAGCCTGTCCTGACCCTCAGCAGCCTC------------------CCCATCGTGGCCTCCCCTGCAGCACAC-----AGGGGAAGAAAGCCCACCACCTCC---ACCAATGCTAACGC-AGGCCTTgcatttcctctgtgcccggtgctgtgtggccaactctgtatgtacaacattacttgatcctcccaataagctgggcgc----cgtggcgcatgcctgtggt-cca
i calJac3.chr22_GL285922_random I 295 C 0
s canFam3.chr1                   20147352 399 - 122678785 ------------------GGACCCTCATGCCTCTCCCTACAGCTCC------CTGG----------AGAACCACCTGGGATGTGCCCAGCAGTACATGG-CC-TGGCC-----AGCTGCCCCT-----CCCC--TCCGAGGCTCAGGCAGTTATGTGgcctggaacactcctccctctccttcagg--ccacctcgggctgccaaacttgctggtctggttcagctccagctgcc----------------------cctcctcctcca----------------------ggaagcctgccctga-cctcagcagccccccctgggcttctgcagcaccctttgcatcccccatcacaccacACTATGTACGGAAGGAAAGCCCACCATCTCCACTGCTGTTGctaacactcaacctagcatctcctcattgccaggaactgtgcagagagctc----tccataacgtcatttaatcctcccaat---------gt-----------------tgtgatccca
i canFam3.chr1                  C 0 I 212
e papAnu2.chr19                  47962510 905 +  51301725 M

a score=32325.000000
s hg38.chr19_GL949751v2_alt        990708 13 +   1002683 gcacttcgggagg
s panTro4.chr19                  59985045 13 +  63644993 gcacttcgggagg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56938597 13 +  60714840 gcacttcaggagg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103407822 13 - 106955855 gcacttcgggagg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60715924 13 +  64156825 gcactttgggagg
i rheMac3.chr19                 C 0 I 411
s macFas5.chr19                  55874902 13 +  59248254 gcactttgggagg
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47664105 13 +  50890351 gcactttgggagg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     72478 13 +    138250 gcactttgggagg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e papAnu2.chr19                  47962510 905 +  51301725 M

a score=30700.000000
s hg38.chr19_GL949751v2_alt        990721 23 +   1002683 ataaggcaggagtatcacatgag
s panTro4.chr19                  59985058 23 +  63644993 acgaggcaggagtatcacatgag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56938610 23 +  60714840 atgaggcaggagtatcacttgag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103407835 23 - 106955855 acgaggcaggagtatcacatgag
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55874915 23 +  59248254 ttgaagcaggatgatcacttgag
i macFas5.chr19                 C 0 I 1
s chlSab2.chr6                   47664118 23 +  50890351 tcaagacaggaggatcacttgag
i chlSab2.chr6                  C 0 I 383
s calJac3.chr22_GL285922_random     72491 23 +    138250 gcgaggcaggaggatgatttgag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e papAnu2.chr19                  47962510 905 +  51301725 M
e rheMac3.chr19                  60715937 411 +  64156825 I

a score=41212.000000
s hg38.chr19_GL949751v2_alt        990744 40 +   1002683 cccaggagttg---------gaga---------------ccagcctgggcaacataaggagact
s panTro4.chr19                  59985081 40 +  63644993 cccaggagttg---------gaga---------------ccagcctgggcaacataaggagact
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56938633 40 +  60714840 cccaggagttg---------gaga---------------ccagcctgggcaacatagggagact
i ponAbe2.chr19                 C 0 I 3064
s nomLeu3.chr10                 103407858 40 - 106955855 cccaggagttg---------gaga---------------ccagcctgggcaacacagggagatt
i nomLeu3.chr10                 C 0 I 6
s macFas5.chr19                  55874939 64 +  59248254 ggcggaggttgcagtgaaccgagattatggccctgcactccagcctgggcaatagagggagact
i macFas5.chr19                 I 1 C 0
s calJac3.chr22_GL285922_random     72514 40 +    138250 cccaggagctg---------gaga---------------ccagcctgggcaatatagggagact
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e chlSab2.chr6                   47664141 383 +  50890351 I
e papAnu2.chr19                  47962510 905 +  51301725 M
e rheMac3.chr19                  60715937 411 +  64156825 I

a score=2296.000000
s hg38.chr19_GL949751v2_alt        990784 3 +   1002683 cta
s panTro4.chr19                  59985121 3 +  63644993 cta
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103407904 3 - 106955855 tta
i nomLeu3.chr10                 I 6 C 0
s macFas5.chr19                  55875003 3 +  59248254 cta
i macFas5.chr19                 C 0 I 345
s calJac3.chr22_GL285922_random     72554 3 +    138250 cta
i calJac3.chr22_GL285922_random C 0 I 80
e canFam3.chr1                   20147751 212 - 122678785 I
e ponAbe2.chr19                  56938673 3064 +  60714840 I
e chlSab2.chr6                   47664141 383 +  50890351 I
e papAnu2.chr19                  47962510 905 +  51301725 M
e rheMac3.chr19                  60715937 411 +  64156825 I

a score=1663.000000
s hg38.chr19_GL949751v2_alt        990787 30 +   1002683 cta-tatatatgtgta------------------------------tatatatttatatat
s panTro4.chr19                  59985124 60 +  63644993 cta-tctatctatctatctatctatctatctatctatctatctagctatctatctatctat
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103407907 31 - 106955855 ctattatatatgtata------------------------------tatatatgtatgtat
i nomLeu3.chr10                 C 0 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e ponAbe2.chr19                  56938673 3064 +  60714840 I
e calJac3.chr22_GL285922_random     72557 80 +    138250 I
e chlSab2.chr6                   47664141 383 +  50890351 I
e papAnu2.chr19                  47962510 905 +  51301725 M
e macFas5.chr19                  55875006 345 +  59248254 I
e rheMac3.chr19                  60715937 411 +  64156825 I

a score=180.000000
s hg38.chr19_GL949751v2_alt        990817 1 +   1002683 a
s panTro4.chr19                  59985184 1 +  63644993 a
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103407938 1 - 106955855 a
i nomLeu3.chr10                 C 0 I 115
s calJac3.chr22_GL285922_random     72637 1 +    138250 g
i calJac3.chr22_GL285922_random I 80 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e ponAbe2.chr19                  56938673 3064 +  60714840 I
e chlSab2.chr6                   47664141 383 +  50890351 I
e papAnu2.chr19                  47962510 905 +  51301725 M
e macFas5.chr19                  55875006 345 +  59248254 I
e rheMac3.chr19                  60715937 411 +  64156825 I

a score=86662.000000
s hg38.chr19_GL949751v2_alt        990818 109 +   1002683 gtctgagatgggaggatcaccccagtaggtcgagactgcagtgagctgtgattatgacactgcattctagcctgggccacagaactagaccttgtctcaattaag--aaaa
s panTro4.chr19                  59985185 111 +  63644993 gtctgagatgggaggatcaccctagtaggtcgaggctgcagtgagctgtgattatgacactgcattccagcctgggccacagaactagaccttgtctcaattaagaaaaaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56941737 110 +  60714840 gtctgagaggggaggatcactccagtaggtcgaggctgcagtgagctgtgattatgacactgcattctagcctgggccacagaaagagaccttgtctcaattaaa-aaaaa
i ponAbe2.chr19                 I 3064 C 0
s nomLeu3.chr10                 103408054 109 - 106955855 gtctgagaggggaggatcgctccagtaggtccaggctgcagtgagctgtgattatgacactgcattctagcctgggccacagaacgagaccttgtctcaattaaa--aaaa
i nomLeu3.chr10                 I 115 C 0
s calJac3.chr22_GL285922_random     72638 109 +    138250 gtctgagacgggaggatcgccccagtacgtcaaggctgcagtgagctgagattatgacactgccttctaacctgggccacagaatgagaccctgtctcaaaaaag--aaaa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e chlSab2.chr6                   47664141 383 +  50890351 I
e papAnu2.chr19                  47962510 905 +  51301725 M
e macFas5.chr19                  55875006 345 +  59248254 I
e rheMac3.chr19                  60715937 411 +  64156825 I

a score=2548.000000
s hg38.chr19_GL949751v2_alt        990927 1 +   1002683 a
s panTro4.chr19                  59985296 1 +  63644993 a
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56941847 1 +  60714840 a
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103408163 1 - 106955855 a
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60716348 1 +  64156825 a
i rheMac3.chr19                 I 411 C 0
s macFas5.chr19                  55875351 1 +  59248254 a
i macFas5.chr19                 I 345 C 0
s chlSab2.chr6                   47664524 1 +  50890351 a
i chlSab2.chr6                  I 383 C 0
s calJac3.chr22_GL285922_random     72747 1 +    138250 a
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20147751 212 - 122678785 I
e papAnu2.chr19                  47962510 905 +  51301725 M

a score=3276.000000
s hg38.chr19_GL949751v2_alt        990928 1 +   1002683 a
s panTro4.chr19                  59985297 1 +  63644993 a
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56941848 1 +  60714840 a
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103408164 1 - 106955855 a
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60716349 1 +  64156825 a
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55875352 1 +  59248254 a
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47664525 1 +  50890351 a
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     72748 1 +    138250 a
i calJac3.chr22_GL285922_random C 0 I 1088
s canFam3.chr1                   20147963 1 - 122678785 a
i canFam3.chr1                  I 212 C 0
e papAnu2.chr19                  47962510 905 +  51301725 M

a score=57530.000000
s hg38.chr19_GL949751v2_alt        990929 25 +   1002683 aatggggataataggacccattcca
s panTro4.chr19                  59985298 25 +  63644993 aatggggataataggacccattcca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56941849 25 +  60714840 aaTGGGGATAATAGGACCCATTCCA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103408165 25 - 106955855 aaTGGGGATAATAGGACCCATTCCA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60716350 25 +  64156825 aatggggataagaggacccattcca
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55875353 25 +  59248254 aatggggataagaggacccattcca
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47664526 25 +  50890351 aatggggataagaggacccattcca
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20147964 25 - 122678785 aagggggataatggaatccgtttca
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e papAnu2.chr19                  47962510 905 +  51301725 M

a score=1135854.000000
s hg38.chr19_GL949751v2_alt        990954 442 +   1002683 taggatgtggtgaggattaTGCAT--acacacacacaca------cacaca------cacacacaTTTATGATGTACTG---AGAAGATATAAGCACAC------------------AATAAGTATCTCcaaaattatcaagtggcaaagccaggattcagacccacacctgcccgaggctctctgccatcagaccacactata--------tctctTTCTCTCTGTTCCTTCATCCCCATCAATCGAAGGC--AAAAATGTGCCTTCTCTGATTTCCAGGCTCACTCAGCATAGACCGTGGAGGCAACATATCTTGAATGAAGCAACAAAGCAGTAATGCACATGAATGCACCAAATGCCAAAAGCtcgtttactcaacaagtatctctccaacactttctatgtgctagacccaattctgtgtgctgcagattaagtggaggactgatcacacaaaaatctttgccctt-gtgaagcttgca-tttt
s panTro4.chr19                  59985323 441 +  63644993 taggatgtggtgaggattaTGcatacacacacacacaca------cacaca------cacacacaTTTATGATGTACTG---AGAAGATATAAGCACAC------------------AATAACTATCTCCAAAATGATCaagtggcaaagccaggattcagacccacacctgcccgaggctctctgccatcagaccacactata--------tctctTTCTCTCTGTTCCTTCATCCCCATCAATCCAAGGC--AAAAATGTGCCTTCTCTGATTTCCAGCCTCACTCAGCATAGACCATGGAGGCAACATATCTTGAATGAAGCAACAAAGCAATAATGCACATGAATGCACCAAATGCCAAAAGCtcgttcactcaacaagtatctctccaacactttctatgtgctagacccaattccatgtgctgcagattaagtgggggactgatcacacaaaaatctttgccctt-gtgaagcttgca----t
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56941874 445 +  60714840 TAGGATGTGTTGAGGATTATGcatacacacacacacaca------cacaca------cacacacaTTTATGATGTACtg---agaagatataagcacac------------------aataagtatctccaaaattatcaagtggcaaagccaggattcagacccacacctgcccgaggctctctgccatcagaccacactata--------tctctTTCTCTCTGTTCCTTCATCCCCATCAATCCAAGGC--AAAAATGTGCCTTCTCTGATTTCCAGCCTCACTCACCATAGACCGTGGAGGCAACATATCTTGAATGAAGCAATGAAGCAATAATGCACATAAATGCACCAAATGCCAAAAGCttgttcactcaacaagtatctctccaacactttctatgtgctagaaccaattccgtgtgctgcagattaagtgggggactgatcacacaaaaatctttgccctt-gtgaagcttgcattttt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103408190 436 - 106955855 TAGGATGTGTTGAGCATTATGcat----acacacacacg------cacaca------cacgcacaTTTATGATGTACTG---AGAAGATATAAGCACAC------------------AATAAGTATCTCcagaattatcaagtggcaaagccaggattcagacccacacctgcccgaggctctctgccatcagaccacactata--------tcCCTTTCTCTCTGTTCCTTCATCCCCATCAATCCAAGGC--AAAAACGTGCCTTCTCTGATTTCCAGCCTCACTCAGCATAGACCATGGAGGCAACGTATGTTGAATGAAGCAATGAAGCAATAATGCACACGAATGCACCAAATGCCAAAAGCtcgttcactcaacaagtatctctccaacactttctatgtgctagacccaattccgtgtgctgcagattaagtgggggactaatcacacaaaaatctttgccctc-gtgaagcttgct-----
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60716375 449 +  64156825 taggatatggtgtggattaTGcacacacacacacacaca--cgcacacgca------cacacacaTTTATGATGTACTGAGAAGAAGATATAAGCACAC------------------AATAAGTATCTCCAAAATTATGCagtggcaaagccaggattcagacccacacctgcccaaGGCTCTCTGCCGTCAGACCACACTATA--------TCTCTTTCTCTCTGTTCCTTCATTCCCATCAATCTAAGGCAAAAAAACATGCCTTCTCTGATTTCCAGCCTCACTCAGCATAGACTGTGGAGGCAACATATCTTGAATGAAGCAATGAAGCAATAATGCACATGAATGCACCAAATGCCAAAAGCtcattcactcaacaagtatctctccaacacttcctgtgtgctagacccaattccgtgtgctgcagactaagtcggggactgaccacacaaaaatctttgccctt-gtgaagcctgca-----
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55875378 447 +  59248254 taggatatggtgaggattatgcacacacacacacacaca----cacacgca------cacacacatttatgatgtactgagaagaagatataagcacac------------------aataagtatctccaaaattatgcagtggcaaagccaggattcagacccacacctgcccaaggctctctgccgtcggaccacactata--------tctctTTCTCTCTGTTCCTTCATTCCCATCAATCCGAGGCAAAAAAACATGCCTTCTCTGATTTCCAGCCTCACTCAGCATAGACTGTGGAGGCAACATATCTTGAATGAAGCAATGAAGCAATAATGCACATGAATGCACCAAATGCCAAAAGCtcattcactcaacaagtatctctccaacacttcctgtgtgctagacccaattccgtgtgctgcagactaagtcggggactgaccacacaaaaatctttgccctt-gtgaagcctgca-----
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47963447 453 +  51301725 TAGGATATGGTGAGGattatgcacgcacacacacacacacacacacacgca------cacacacatttatgatgTACTGAGAAGAAGATATAAGCACAC------------------AATAAGTATCTCCAAAATTATgcagtggcaaagccaggattcagACCCACACCTGCCCAAGGCTCTCTGCCGTCAGACCACActata--------tctctttctctctgttccttcATTGCCATCAATCCAAGGC-AAAAAACATGCCTTCTCTGATTTCCAGCCTCACTCAGCATAGACTGTGGAGGCAACATATCTTGAATGAAGCAATGAAGCAATAATGCACATGAATGCACCAAATGCCAAAAGctcattcactcaacaagtatCTCTCCAACA-TTCCTGTGTGCTAGACCCAATTCCATGTGCTGCAGATTAAGTAGGGGACTGACCACACAAAAATCTTTGCCCTT-GTGaagcctgca-tttt
i papAnu2.chr19                 M 905 C 0
s chlSab2.chr6                   47664551 453 +  50890351 tagggtatggtgaggattaTGcacacacacacgcacgca--cacacacgcacgcacgcacacacaTTTATGATGTACTGAGAAGAAGATATAAGCACAC------------------AATAAGTATCTCCAAAATTATGCagtggcaaagccaggattcagacccacacctgcccaaGGCTCTCTACCGTCAGACCACACTATA--------TCTCTTTCTCTCTGTTCCTTCATTCCCATCAATCCAAGGC-AAAAAACATGCCTTCTCTGATTTCCAGCCTCACTCAGCATAGACTGTGGAGGCAACATATCTTGAATGAAGCAATGAAGCAATAATGCACATGAATGCACCAAATGCCAAAAGCtcattcactcaacaagtatctctccaacacgtcctgtgtgctagacccaattccgtgtgctgcagattaagt-agggactgaccacacaaaaatctttgccctt-gtgaagcttgca-----
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20147989 412 - 122678785 taggatgctgtgaggattagatgtgcgcacagacaagca---------gcg---------------------tgtactcagaagaaggcagaagcacacccacagtaggtattgagtaatgagtattatCAACACTGTTTAATGGC--AGTCAGAACCTGAACCCACACCCACCTG-GGCTCTCTGCCATCACACCACACCATATGATCGTCTCTCTTTCCCTCTACTCTTTCATCCCTGTCAGCCCAGGAC--AAAGGTGTGCTTTCTCTGGTTTCCAGCCTCCTTCGGCATAGACTATGGGGTTAACGTGTGGTGAACAAAACAATGGAGCA-TAATATATATGAATGCACCAAGGG--------------------caaatatcattccagcacttactgta----------------atgtgcagcag----agtgcagggctgaacgcacagatgtctttgtctttcgtgaaacttaca-ttct
i canFam3.chr1                  C 0 I 626
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I

a score=406113.000000
s hg38.chr19_GL949751v2_alt        991396 204 +   1002683 tttttttttttttttgagatggagtcttgctctgtcacccaggctggagtgcagtggagca---atcttggctcactgcaatctccacctcccgggttcacgccattctcctgcctcagcctccggagtaggtgggactacaggcacccaccaccaagcctggttaattgttttgtatttttagtagagacggggtttcaccatgtt
s panTro4.chr19                  59985764 204 +  63644993 tttttttttttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggagcg---atcttggctcactgcaatctccacctcctgggttcacgccattctcctgcctcagcctccggagtaggtgggactacaggcacccaccaccaagcctggttaattgttttgtatttttagtagagatggggtttcaccatgtt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56942319 203 +  60714840 tttttttttttttttgagacagagtattgctctgtcacccaggctggagtgcagtggtgcg---atctcggctcactgcaagctccgcttcccaggttcctgccattctcctgcctcagcctccggagtagctgggactacaggcgcccgccaccatgcccggctaatt-ttttgtattgttagtggagacggggtttcaccgtgtt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103408626 200 - 106955855 ----tttgtttttttcagacagagtctcactctgtcgcccaggctggagtgcagtggcgcg---atcttggctcactgcaagctccgcttccctggttcccgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccaagcccagctaattgttttgtatttttagtacagacagggtttcaccgtgtt
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60716824 204 +  64156825 --tttttttttttttttgatggaatcttgctctgtcacccaggctggagtgcagtggcatgatcatcttggctcactacaacctccacctcccaggttcaagcaactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccaccaactccggctaatt-gtttgtatttttagtagaaattgggttttatcatgtt
i rheMac3.chr19                 C 0 I 3342
s macFas5.chr19                  55875825 204 +  59248254 --tttttttttttttttgatggaatcttgctctgtcacccaggctggagtgcagtggcatgatcatcttggctcactacaacctccacctcccaggttcaagcgactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccaccaactccggctaatt-gtttgtatttttagtagaaattgggttttatcatgtt
i macFas5.chr19                 C 0 I 4
s papAnu2.chr19                  47963900 206 +  51301725 tttttttttttttttttgatggaatcttgctctgtcacccaggctggagtgcagtggcatgatcatctcggctcactacaacctccacctcccaggttcaagcgactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccaccaactccggctaatt-gtttgtatttttagtagaaattgggttttatcatgtt
i papAnu2.chr19                 C 0 I 4
s chlSab2.chr6                   47665004 206 +  50890351 ttttttttttttttttggatggaatcttgctctgtcacccaggctggagtgcagtggcatgatcatctcggctcactacaacctccacctcccaggttcaagcaactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccaccaactccggctaatt-ttttgtatttttagtagaaatggggttttatcatgtt
i chlSab2.chr6                  C 0 I 1847
e canFam3.chr1                   20148401 626 - 122678785 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I

a score=74060.000000
s hg38.chr19_GL949751v2_alt        991600  83 +   1002683 agccaggatggtctca----------------atctcctgacctc--gtgatccacacgcctcggcctcccaaagtgctgggattacaggcgtgagccacc
s panTro4.chr19                  59985968  83 +  63644993 agccagggtggtctca----------------atctcctgacctc--gtgatccacacgccttggcctcccaaagtgctgggattacaggcgtgagccacc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56942522  83 +  60714840 agccagaatggtctcg----------------atctcctgacctt--gtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacc
i ponAbe2.chr19                 C 0 I 378
s nomLeu3.chr10                 103408826  83 - 106955855 agccaggatggtatcg----------------atctcctgacctc--gtgatccgccggcctcggcctcccaaagtgctgggattacaggcgtgagccacc
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55876033 101 +  59248254 ACgtggtgtgatctcaggtgactgcaacgtccacctcctgggttcaagtgattttcttgtctcagccccccaagaagctgggattacaggtgtgcaccacc
i macFas5.chr19                 I 4 C 0
s papAnu2.chr19                  47964110 101 +  51301725 acatggtgtgatctcaggtgactgcaacgtccacctcctgggttcaagtgattttcttgtctcagccccccaagaagctgggattacaggtgtgcaccacc
i papAnu2.chr19                 I 4 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=73951.000000
s hg38.chr19_GL949751v2_alt        991683 164 +   1002683 acacccggccGCttttttttttttta----agatggagtctcgctctgtcacccaggctggagtgcagtggcacgatcatctcggttcactgcaacctccacctcccaggttcaagtgactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccac
s panTro4.chr19                  59986051 161 +  63644993 acacccggccGC---Attttttttta----agatggagtctcgctctgtcagccaggctggagtgcagtggcatgatcatctcgtctcactgcaacctccacctcccaggttcaagtcactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccac
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103408909 163 - 106955855 gcacccggccAC-Atttttttttttt----agatggaatctcgctctgtcacccaggctggagtgcagtggcgtgatcatctcggctcactgcaacctccacctcccagtttcaagcgactctcttgccttggtctcccaagaagctgggattacaggtgtgcaccac
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55876134 134 +  59248254 acctccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggttgg----------------------------------tctcgaactcccaacctcgagtgatccacccacctcagcctcccaaagtgctgggattacaggcatatgccac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47964211 134 +  51301725 acctccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggttgg----------------------------------tctcgaactcccaacctcgagtgatccacccacctcagcttcccaaagtgctgggattacaggcatatgccac
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=600.000000
s hg38.chr19_GL949751v2_alt        991847 1 +   1002683 c
s panTro4.chr19                  59986212 1 +  63644993 c
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103409072 1 - 106955855 c
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55876268 1 +  59248254 c
i macFas5.chr19                 C 0 I 2541
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e papAnu2.chr19                  47964345 0 +  51301725 C
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=14981.000000
s hg38.chr19_GL949751v2_alt        991848 64 +   1002683 aactctggctaatttttttt-tttttagtagaaatggggttttatcatgttggtgacatggtgtg
s panTro4.chr19                  59986213 61 +  63644993 aactctggctaa---ttttt-tttttagtagaaatggggttttatcatgttggtgacatggtgtg
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103409073 65 - 106955855 aactctggctaattttttgtatttttagtagaaatgaggttttatcatgttggTGACATGGTGTG
i nomLeu3.chr10                 C 0 I 1689
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e papAnu2.chr19                  47964345  0 +  51301725 C
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=20348.000000
s hg38.chr19_GL949751v2_alt        991912 225 +   1002683 atctcggctgactgcaacctccacctccggggttcaagcaattttcttgtctcagcctcccaagaagctgggattacaggtgtacaccaccacccccggctaattttcatattttcagtagagacgtgctttcaccatgttggccaggttggtctcgaactcccaacctcaagtgatcaatccgcctcagcctcccaaagtgctgggattacaggcatgtgccac
s panTro4.chr19                  59986274 225 +  63644993 atcttggctgactgcaacctccacctccggggttcaagcaattttcttgtctcagcctcccaagaaactgggattggaggtgtacaccaccacccccggctaattttcatattttcagtagagacgtgttttcaccatgttggccaggctggtctcgaactcccaacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgtgccac
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e nomLeu3.chr10                 103409138 1689 - 106955855 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e papAnu2.chr19                  47964345   0 +  51301725 C
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=172517.000000
s hg38.chr19_GL949751v2_alt        992137 709 +   1002683 cgtgcccagccTGtgaagcttgcattctaacggaggagacacagacaaaatgaaccaggaacacagtgggtaagaaggtgaaaagttctccacacaaaaatgaagtagggagagaggaaagagactacaaagaagttgggttgccgggggcggtggctcacacccataatcccagcactttgggaggccgaggcgggcagatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaatgctgtctctactaaaagtacaaaattagccgggcgtggtggcgcgcgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgggggggcggaggttgcggtgagccaagattgcgccactgcactccagcctgggcaacaagagtgaaactctgtctc-aaaaaaaacaaa----------agaagtcgagtaagggatgccgccatttgaaacagggtggtcagccagtcctctgagaaggtgacattcaggcaaagatcaaaggaggcaagaaagtgaggcatgagggtatctggt-agaagagcattccaggcagaggaaacagcaagtgcaaaggccctgaggcaggaccgggtctggatgttccaagagcagcaaggaggccagtgtgctgacacacagaaggaagagatgagatcagaATCACGTCCCTTAAGGCCTTGCAAGATGTCAGC---
s panTro4.chr19                  59986499 712 +  63644993 cgtgcccagccTGtgaagcttgcattctaacggaggagacacagacaaaatgaaccaggaacgcagtgggtaagaaggtgaaaagttctccacacaaaaatgaactagggagagaggaaagagactacaaagaagttgggttgccgggggcggtggctcacacccgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaatgctgtctctactaaaagtacaaaattagccgggcatggtggcgcgcgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacct-ggggggtggaggttgcggtgagccaagattgtgccactgcactccagcctgggcaacaagagcgaaactctgtctcaaaaaaaaacaaa----------agaagtcgagtaagggatgccgccatttgaaacagggtggtcacccagtcctctgagaaggtgacattcaggcaaagaccaaaggaggcaaggaagtgaggcatgagggtatctggt-agaagagcattccaggcagaggaaatagcaagtgcaaaggccctgaggcaggactgggtctggatgttccaagagcagcaaggaggccagtgtgctgacacacagaaggaagagaTGAGAACAGAATCACGTCCCTTAAGGCCTTGCAAGATGTCAGCttt
i panTro4.chr19                 C 0 C 0
s papAnu2.chr19                  47964345 709 +  51301725 cgtgcccggcctgtgaaGCTTGCATTCTAACAGAGGAGACACAGACAAAATCAACCAGGAATACAATGGGTAAGAAGGTGAAAAGTGCTCCACACAAAAATAAagtagggagagaggaaagagactaCAAAGAAGTTGggttgccaggcacggtggctcatgcctgtaatctcagcactttgggaggctgagacaggcagatcatgaggtcaagagatcgagaccatcc---------tggtgaaaccccatctctgctaaaaatacaaaattagccgggcgtggtagtgcgcacctgtagtctcagctactcaggaggctgaggcagaagaatggcttgaaccc-aagaggcggaggttgtggtgagctgagatcacaccactgcactacagcgtggccaacaagagcgaaactctgtctcaaaaagaaaaaaaaatcaaaaacaaaagtcaGGTAAGGGATGCCGCCATTTGAAACAGGGTGGTCACCCAGTC--CTGAGAAGGTGACATTCAGGCAAAGACCAAAGGAGGCAAGGAAGTGAGGCATGAGGGTATCTGGcaagaagagcattccaggcagagagaacagcaagtgcaaagccCTGAAGGCAGAACCGGGTCTTGGTGTTCCAAGAGCAGCAAGGAGGCCGGTGTGCTGACACACAGAAGGAAGAGATGAGATCAGAATCACATCCCTTAAGGCCTTGCAAGATGTCAGC---
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e calJac3.chr22_GL285922_random     72749 1088 +    138250 I
e nomLeu3.chr10                 103409138 1689 - 106955855 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=546.000000
s hg38.chr19_GL949751v2_alt        992846 1 +   1002683 t
s panTro4.chr19                  59987211 1 +  63644993 t
i panTro4.chr19                 C 0 C 0
s papAnu2.chr19                  47965054 1 +  51301725 T
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     73837 1 +    138250 T
i calJac3.chr22_GL285922_random I 1088 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e nomLeu3.chr10                 103409138 1689 - 106955855 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=2246.000000
s hg38.chr19_GL949751v2_alt        992847 3 +   1002683 ttt
s panTro4.chr19                  59987212 3 +  63644993 ttt
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103410827 2 - 106955855 -tt
i nomLeu3.chr10                 I 1689 C 0
s papAnu2.chr19                  47965055 3 +  51301725 TTT
i papAnu2.chr19                 C 0 I 1203
s calJac3.chr22_GL285922_random     73838 3 +    138250 ttt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=1092.000000
s hg38.chr19_GL949751v2_alt        992850 2 +   1002683 tt
s panTro4.chr19                  59987215 2 +  63644993 tt
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103410829 2 - 106955855 tt
i nomLeu3.chr10                 C 0 C 0
s calJac3.chr22_GL285922_random     73841 2 +    138250 tt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e papAnu2.chr19                  47965058 1203 +  51301725 I
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60717028 3342 +  64156825 I

a score=-1909.000000
s hg38.chr19_GL949751v2_alt        992852 1 +   1002683 -t
s panTro4.chr19                  59987217 1 +  63644993 -t
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103410831 1 - 106955855 -g
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60720370 1 +  64156825 -t
i rheMac3.chr19                 I 3342 C 0
s calJac3.chr22_GL285922_random     73843 1 +    138250 a-
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e papAnu2.chr19                  47965058 1203 +  51301725 I
e macFas5.chr19                  55876269 2541 +  59248254 I

a score=5361.000000
s hg38.chr19_GL949751v2_alt        992853 8 +   1002683 ttttcttc
s panTro4.chr19                  59987218 8 +  63644993 ttttcttc
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103410832 8 - 106955855 ttttgttt
i nomLeu3.chr10                 C 0 I 1
s rheMac3.chr19                  60720371 8 +  64156825 tttttttt
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47966261 8 +  51301725 tttttttg
i papAnu2.chr19                 I 1203 C 0
s calJac3.chr22_GL285922_random     73844 8 +    138250 cgtttttg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e ponAbe2.chr19                  56942605 378 +  60714840 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e macFas5.chr19                  55876269 2541 +  59248254 I

a score=23232.000000
s hg38.chr19_GL949751v2_alt        992861 16 +   1002683 ttttttgagacagagt
s panTro4.chr19                  59987226 16 +  63644993 ttttttgagacagagt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56942983 16 +  60714840 ttttttcagacagcgt
i ponAbe2.chr19                 I 378 C 0
s nomLeu3.chr10                 103410841 16 - 106955855 ttttttcagacagcgt
i nomLeu3.chr10                 I 1 C 0
s rheMac3.chr19                  60720379 16 +  64156825 ttttttgagacggagt
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47966269 16 +  51301725 ttttttgagatggagc
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     73852 16 +    138250 ttttttgagatggggt
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e chlSab2.chr6                   47665210 1847 +  50890351 I
e macFas5.chr19                  55876269 2541 +  59248254 I

a score=427854.000000
s hg38.chr19_GL949751v2_alt        992877 250 +   1002683 ctcgctctgtcgcccaggctggagtgcaatggcgcaa-tctcggctcactgcaagctccgccttccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgc-ccaccaccacgcccggctaa----------------------ttgtttgtatttttagtagagacggggtttcaccgt----------------------------------gttagcca------ggatggtctcgatctcctgacctcgtg--ttccacccgcctcggcctcccaaagtgctgggattacagg
s panTro4.chr19                  59987242 250 +  63644993 ctcactctgtcgcccaggctggagtgcaatggcgcaa-tctcggctcactgcaagctctgccttccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc-ccaccaccacgcccggctaa----------------------ttttttgtatttttagtggagacggggtttcaccgt----------------------------------gttagcca------ggatggtctcgatctcctgacctcgtg--atccacccgcctcggcctcccaaagtgctgggattacagg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56942999 249 +  60714840 ctcactctgtcacccaggctggagtgcagcggcgtga-tctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggtgc-ccgccaccacgcccagctaa----------------------tt-tttgtatttttagtagagacagggtttcaccat----------------------------------gttggcca------ggctggtctcgaactcctgacctcatg--atccgtccgcctcggcctcccaaagtgctgggattatagg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103410857 249 - 106955855 ctcactctgtcgcccagcctagagtgcagtggtgtga-tctcggctcactgcaacctccgcttcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgc-ccgccaccacgcccggctaa----------------------tt-tttgtatttttagtagagacagggtttcaccat----------------------------------gttggcct------ggctggtctcgaactcctgaccccgtg--atccgcctgcctcggcctcccaaagtgctgggattacagg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60720395 238 +  64156825 ctcgctctgtcgcccaggctggagtgcagtggcgaga-tctcagctcactgcaagctccgcctcccgggttcacgccattctcctgccccagcctcccgagtagctggggctacaggcgc-ccacaaccgcgcccggctaa---------------------ttt-tttgtatttttagtagagacaggg-------------------------------------------gttcaccg---------tggtctcgatctcctgaccttgtg--atccgcccgcctcggcctcccaaagtgctgggattacagC
i rheMac3.chr19                 C 0 I 12
s papAnu2.chr19                  47966285 304 +  51301725 ctggctttgttacccaggctggagtgcaatggtacaa-tattggctcattgcaacctccacctccggggttcaagtgattctcctgcctcagcctcctcactagctgggattacaggtgc-ccaccaccacgactggctaatttttgtgtttctttttttttttt-tttttttttttttttgagacagagtctcgctctgtcacccaggctggagtgtggtggccggatctcagctcactg---------caagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacagg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47667057 252 +  50890351 ctcgccctgttgcccaggctggagtgcagtggtgcgattatcggctcaccgcaacctccgcctcccaggttcaagtgattttcctgcctcagcctcctgaatagctgggattacaagtgc-ccgccaccacggccggctaa----------------------tt-tttgtgtttttagtagagatggggttttgtcat----------------------------------gttggctg------ggctggtctcgaactcctgacctcaagtgatccgcctgcctcggcctcccaaagtgctgggattacagg
i chlSab2.chr6                  I 1847 C 0
s calJac3.chr22_GL285922_random     73868 251 +    138250 cttgctctgttgcccaggctggagtgcagtggtgtga-tctcagctcactgcaacatccgtttcccaggtttaagcgattctcctgcctcagcctcctgagtagctggggttacaggtgcaccaccaccacgcctggcTAA----------------------TT-tttgtatttttgtttg-------tttgttttgt----------------------------------gtttgtttttttgAGGTGaacctctgcctcctgggttcaggcaattctcctgcctcagcctcccgagtagctgggatgacagg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e macFas5.chr19                  55876269 2541 +  59248254 I

a score=24801.000000
s hg38.chr19_GL949751v2_alt        993127 21 +   1002683 tgtgagccactgcgcccggcc
s panTro4.chr19                  59987492 21 +  63644993 tgtgagccactgcgcccggcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56943248 21 +  60714840 cgtgagccaccgcgcccagcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103411106 21 - 106955855 catgagccaccgcgcccagcc
i nomLeu3.chr10                 C 0 C 0
s papAnu2.chr19                  47966589 21 +  51301725 cgcccgccacctcgcccggct
i papAnu2.chr19                 C 0 I 4
s chlSab2.chr6                   47667309 21 +  50890351 cgtgagccactgtacgtggcc
i chlSab2.chr6                  C 0 I 1
s calJac3.chr22_GL285922_random     74119 21 +    138250 cacgcaccaccacacccagct
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e macFas5.chr19                  55876269 2541 +  59248254 I
e rheMac3.chr19                  60720633 12 +  64156825 I

a score=444907.000000
s hg38.chr19_GL949751v2_alt        993148 282 +   1002683 TGttttctg--tttttt-----gagatggagcctcgctctcttgcctaggctggagtgcagtggtgcaattatcggctcgccgcaacctctgcctcccgggttcaagtgattttcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacctggat-aatttttgtgtttttagtacagatggggtttcaccatgttggctgggctggtctcgaactcctgtcctcaggtgatctgcctgcctcggcctcccaaagtgctgggattagagatgtga
s panTro4.chr19                  59987513 282 +  63644993 TGttttctg--tttttt-----gagatggagcctcgctctcttgcctaggctggagtgcagtggtgcaattatcggctcgccacaacctctgcctcccgggttcaagtgattttcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacctggat-aatttttgtgtttttagtagagatggggtttcaccatgttggctgggctggtctcgaactcctgtcctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacagatgtga
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56943269 282 +  60714840 TGTAttttg--tttttt-----gagatggagcctcgctctcttgcctaggctggagtgcagtggtgcaattatcggctcaccacaacctccgcctcccgggttcaagtgattttcctgcctcagcctcctgaatagctgggattacaggtgcccaccaccacacctggat-aatttttgtgtttttagtagagatggggtttcaccatgttggctggactggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacagatgtga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103411127 283 - 106955855 TGttttttgt-tttttt-----gagatggggcctcgctctcttgcctaggctggagtgcagtggtgcaattatcggctcatcgcaacctccgcctcccgggttcaagtgattttcctgcctcagcctcctgaatagctgggattacaggtgcccaccaccacacctggat-aatttttgtgtttttagtagaaatggggtttcaccatgttggctgggctggtctcgaactcctgacctcaggtgatctacctgcctcggcctcccaaagtgctgggattacagatgtga
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60720645 267 +  64156825 tttttttt---tttttt-----gagacggagtctcgctctgtcgcccaggctggagttcagtggcgcga-tctcggctcactgcaagctccgcctcccgggttcacgccattctcctgccccagcctcccgagtagctgggactacatgcgcccacaaccgcgcccggctaattttttgtatttttagtagagacggggtttcaccgtg------------gtctcgatctcctgacctt--gtgatccgcccgcctcggactcccaaagcgctgggattacaggcgtga
i rheMac3.chr19                 I 12 C 0
s papAnu2.chr19                  47966614 248 +  51301725 ttttttttgtatttttt-agtagagacggggtttcaccgtgttagccaggatgg----------------tctcg----------------atctcctgacctcgtg--atccacccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcctaatttttgtgtttctatcagagatggggttttgccatgttggccgggccagtctcgaactcctgacctcagatgatccacccgcctcggcctcccaaagtgctaggattaca-------
i papAnu2.chr19                 I 4 C 0
s chlSab2.chr6                   47667331 274 +  50890351 Gtttttttg--tttctt-----gagatggagcgtggctttgttgcctaggctggagtgcaatggtacaa-tattggctcattgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcctcactagctgggattacaggtgcccaccaccacggctggct-aatttttgtgtttttatcagagatggggttttgccgtgttggccaggccagtctcgaactcctgacctcagatgatccacctgcctcggcctcccaaagtgctgggattaca-------
i chlSab2.chr6                  I 1 C 0
s calJac3.chr22_GL285922_random     74140 244 +    138250 -aatttttg--tatttttagtagagacagggtttcaccttgttgaccaggatgg--------------------------------tctcaatctcttgacctcg-----------tgatccagcctcccaaagtgctgggattataggcatgtgccaccacacctggcctaatttttgtatttttagtagagacggggttttgccatgttggcatggctggtctcgaactcctgacttcaggtgatctgcctgcctcagcctcccaaagtgctgggattccaggcatga
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20148401 626 - 122678785 I
e macFas5.chr19                  55876269 2541 +  59248254 I

a score=103735.000000
s hg38.chr19_GL949751v2_alt        993430 56 +   1002683 gccactgta--cccA--Tgcaagtttcttaacccttctcttcctca-ttttctcatctgtg
s panTro4.chr19                  59987795 56 +  63644993 gccattgta--cccA--Cgcaagtttcttaacccttctcttcctca-ttttctcatctgtg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56943551 56 +  60714840 gccactgca--cccA--Cgcaagtttcttaacccttctctgcctca-ttttctcatctgtg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103411410 56 - 106955855 gtcactgca--cccA--CAcaagtttcttaacccttctctgcctca-ttttctcatctgtg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60720912 58 +  64156825 gccaccgcg--cccggccgcaagtttcttaactcttctctgcctca-ttttctcatgtgta
i rheMac3.chr19                 C 0 C 0
s papAnu2.chr19                  47966862 50 +  51301725 ------gca--ccCA--CGCAAGTTTCTTAACCCttctctgcctca-ttttctcatgtgta
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47667605 50 +  50890351 ------gCA--CCCA--CAcaagtttcttaacctttctctgcctca-ttttctcatctgtg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     74384 45 +    138250 gcccctgtg--cGCA--CTGAAG----------CTTCTCTGCCT-G-TTTCTTCATCTGTG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20149027 59 - 122678785 gcaaccgtaacctca--ggcaaatctcttcacccccatggggctcagtttcttcatctgtc
i canFam3.chr1                  I 626 C 0
e macFas5.chr19                  55876269 2541 +  59248254 I

a score=1109236.000000
s hg38.chr19_GL949751v2_alt        993486 382 +   1002683 agacgaagacagcctcccacccagacacactcccctcacggggctctggggagaaatgatgtggaaagctttgctagtaacctctacagcatggagggagttCTGGAAAAGTGATTTCAGA----AAGGTGTTTATGCCTGGAAAGCCTGTTCATTTTTGTGATGTCCTTGGAGCTGGGCCAGGCA-TTATCGAGCTAAATCTTAGCTTTTGTCAGAA-TAGGGGG-----GTCATTGAGGGAAATTTCCAAAGGAAGGTGGAACGGGATGGGTGG----GGAGG---TAAGGGCATGAGCAGAGGCAGTGATCGTGGGCAGGAGGTGTCCATAGAAGACGGGCTGCcactggccctggagacagaaggtcagccccgggt--tcaaatccctccttaacca
s panTro4.chr19                  59987851 382 +  63644993 agacgaaggcagcctcccacccagacacactcccctcacggggctctggggagaaatgatgtggaaagctttgctagtaacctctacagcatggagggagttCTGGAAAAGTGATTTCAGA----AAGGTGTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATGTCCTTGGAGCTGGGCCGGGCA-TTATCAAGCTAAATCTTAGCTTTTGTCAGAA-TGGGGGG-----GTCATTGAGGGAAATTTCCAAAGGAAGGCGGAACGGGATGGGTGG----GGGGG---TAAGGGCATGAGCAGAGGCAGTGATCGTGGACAGGAGGTGTCCACAGAAGACGGGCTGCcactggccctggagacagaaggtcagccccgggt--tcaaatccctccttaacca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56943607 376 +  60714840 agacgaagacagcctcccacccagacacactcacctcaaggggctctggggagaaatgatgtggaaagctttgctagtaacctctacagcatggagggagttCTCGAAAAGTGATTTCAGA----AAGGTGTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATGTACTTGGAGCTGGGCCAGGCA-TTATCGAGCTAAATCTTAGCTTTTGTCAGAATTGGGGGG-----GTCATTGAGGGAAATTTCCAAAGGAAGGGGGAACGGGA----TGG----GGGGG---TGAGGGCATGAGTAGAGGCAGTGATCACGGACAGGAGGTGTCCACATAAGACGGACTGCcactggccctggagac---aggtcagccccgggt--tcaaatccctccttaacca
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103411466 382 - 106955855 agacgaagacagcctcccacccagacacactcccctcacggggctctggggagaaatgatgtgaaaagctttgctagtaacctctacagcatggagggagttCTCGAAAAGGGATTTCAGA----AAGGTTTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATGTCCTTGGAGCTGGGCCAGGCA-TTATCGAGCTAAATCTTAGCTTTTGTCAGAA-TGGGGGG----AGTCATTGAGGGAAATTTCCAAAGGAAGGGGGAACAGGATGGGTGG----GGGGG---CGAGGGCATGGGCAGAAGCAGTGATCACGGACAGGAGGTGTCCACAGAAGACGGACTGCcactggccctggagacagaagatcagccccgggt--tcaaatccctccttaa-ca
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60720970 390 +  64156825 agaCTAAGACAGCCTCCCACCGAGACACACTTCCCTCACGTGGCTCTGGGGAGAAATACTGTGGAAAGCTTTGCTAGTAACCTCTACGGCATGGAGGGAGTTCTCAAAAAGCGATTTTAGA----AAGGTGTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATATCCTTGGAGCTGGGCCAGGCACTTATCGAGCTAAATC-TAACTTTTGTCAGAA-TGGCAGGGGGAAGTCATGGAGGAAAATTTCCAAAGGAAGGGGGAACGGGATGGGTGG----GGGGGTGTTGAGGGCATAGGCAGAGGCAGTGACAACGGACAGGAGGTGTCCACAGAACGGGGACTGCcactggccctggagacagaaggtcagccccgggt--tcaaatcctcccttagcca
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55878810 390 +  59248254 agactaagacagcctcccACCGAGACACACTTCCCTCACGTGGCTCTGGGGAGAAATACTGTGGAAAGCTTTGCTAGTAACCTCTACGGCATGGAGGGAGTTCTCAAAAAGCGATTTTAGA----AAGGTGTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATATCCTTGGAGCTGGGCCAGGCACTTATCGAGCTAAATC-TAACTTTTGTCAGAA-TGGCAGGGGGAAGTCATGGAGGAAAATTTCCAAAGGAAGGGGGAACGGGATGGGTGG----GTGGCTGTTGAGGGCATAGGCAGAGGCAGTGACAACGGACAGGAGGTGTCCACAGAACGGGGACTGCcactggccctggagacagaaggtcagccctgggt--tcaaatcctcccttagcca
i macFas5.chr19                 I 2541 C 0
s papAnu2.chr19                  47966912 394 +  51301725 agaCTAAGACAGCCTCCCACCAAGACACACTTCCCTCACGTGGCTCTGGGGAGAAATACTGTGGAAAGCTTTGCTAGTAACCTCTACGGCATGGAGGGAGTTCTCAAAAAGCGATTTTAGA----AAGGTGTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATATCCTTGGAGCTGGGCCAGGCACTTATCGAGCTAAATC-TAATTTTTGTCAGAA-TGGCagggggaagtcatggaggaaaatttccaaaggaagggggaaggggatgggtgggggtgggggtgttgaGGGCATAGGCAGAGGCAGTGACCACGGACAGGAGGTGTCCACAGAACGGGGACTGCCACTGGCCCTGGAGACAGAAGGTCAGCCCCGGGT--TCAAATCCTCCCTTAGCCA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47667655 391 +  50890351 agactaagacaGCCTCCCACCGAGACACACTTCCCTCACGTGGCCCTGGGGAGAAATACTGTGGAAAGCTTTGCTAGTAACCTCTACGGCATGGAGGGAGTTCTCAAAAAGCGATTTTAGA----AAGGTGTTTATGCCTGGGAAGCCTGTTCATTTTTGTGATATCCTTGGAGCTGGGCCAGGCACTTACCGAGCTAAATC-TAATTTTTGTCAGAA-TGGCGGGGGGAAGTCATGGAGGGAAATTTCCAAAGGAAGGGGGAACGGGATGGGTGGG---GGGGGTGTTGAGGGCATAGGCAGAGGCAGTGACCACGGACAGGAGTTGTCCACAGAACGGGGACTGCcactggccctggagacagaaggtcagccccgtgt--tcaaatcctcccttagcca
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     74429 379 +    138250 AAACGAAGGCATCCTCCCACGCAGACATACTCCCCTCA-GGAGCTCTGGGGAGAAATCCTGTGGATAGCTTTGCTAGCAAGCCCTACCGCATGGAGGGAATCCCCAAAAACGGATTTTAGAAAGGAAGGTGTTTATGCCTGGTAAGCTTATTCATTTCTGTGATGTCCTCGGAGCTGGGCCAGACACTTAACAAGCTAAATCTTAGCTATAATCAGAA-TGGGGAG------TCATAGAGGGAAATTTCCAAAGGAAGAGGGAGCGGGATGGATGG----GGGC----TGAGGGCATGAGCAGAGACA-TGACCATGGACAGGAGGTGGCCACAgaacagggactgctactggccctggagac---aggtcagccccgggt--tcaaatcctggttca-cca
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20149086 317 - 122678785 aaacagaga----ccccca-------acactcacctggctgggtttcgggaagaaatggcatgtataatgtggtcagcaaggaccagggcacaggggaagttctcgaaagaagatGCCAAG----------------CCTGAGGAGCTCGTTAACATGTGAGAAGTGCTTGGAGCTG-----------TGTGGGGCTCCATC---------ATCAGAG-----GGG-----TTTACTGGGGGGAATTTCCAGAGGAAGAGG---------------------------CAAGGGCAGGGGTAGAGGCAGGAACAACGGATGGGAGGTGTGCACAG-GGAGGGACAGACCCTGGCCCCGGAGACAGAAAGGCAGGCCTGGGGGATCAAATCCTACCCTTTCCA
i canFam3.chr1                  C 0 I 467

a score=298369.000000
s hg38.chr19_GL949751v2_alt        993868 100 +   1002683 agtgctgaaatggacaagttgctcaacctctctggccttcagcttcctcatctgtcaagcaggaatCAAACCTCGAACTTCCTCCCGCTGTTAGAATTTC
s panTro4.chr19                  59988233 100 +  63644993 agtgctgaaatggaccagttgctcaacctctctggccttcagcttcctcatctgtcaagcaggaatcaaacctcgaacttcctcccgctgttagaatttc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56943983 100 +  60714840 agtgctgaaatggaccagttgctcaacctctctggccttcagcttcctcatctgtggagcaggaatcaaacctcgaacttcctcccgctgttagaatttc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103411848 100 - 106955855 agtgctgaaatgggccagttcctcaacctctctggccttcagctgcctcatctgtcaagcagaagtcaaacctcgaacttcctcctgctgttagaatttc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60721360 100 +  64156825 agtgctgaaatggactagttgttgaacctctctagccttcggcttcctcatctgtcaagcagaaatcaaacctcgaacttcctcccgttgttagaatttc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55879200 100 +  59248254 agtgctgaaatggactagttgttgaacctctctagccttcggcttcctcatctgtcaagcagaaatcaaacctcgaacttcctcccgttgttagaatttc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47967306 100 +  51301725 AGTGCTGAAATGGACTAGTTGTTGAACCTCTCTAGCCTTCggcttcctcatctgtcaagCAGAAATCAAACCTCGAACTTCCTCCCGTTGCTAGAATTTC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47668046 100 +  50890351 agtgctgaaatggactagttgttgaacctctctagccttcggcttcctcatctgtcaaccagaaatcaaacctcgaacttcctcccgttgttagaatttc
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     74808 100 +    138250 ggtgctgaaacggaccagtcgctcaccctccctagacttcagcttccttatctgtcaagcagaaatCCAACCTCGAACTTCCTCCCGTTGTTAGAATTTG
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20149403 467 - 122678785 I

a score=1194596.000000
s hg38.chr19_GL949751v2_alt        993968 390 +   1002683 AAGGGAGTTTTAAAGACAGAGCTTTCAACTCTGACCTGTGAACAAGTGTGACATCAAATGTACTGTTCGTTGCTATTATTCTGTTGCTACAAGGCAGACAGTTA-GTTTCCCAGCTCCCCTGCAGTCCCCCCAG-CCCCTCCTAGATCTGTCTGCCAGCCCCGCCCCGGGGTCACTCCAGCCAGGCTGTGCCAGGTGAATGCTCAGGTATGCggaggcg-----------gaggcggaggcaggacggccctgggagggagcagg-aggaggGGCCGGCAGCCTG------GAAGGGAAAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTAAGGAGATCCGGGTCAGGAGAGAAGGGGGCCGGGGCTTGACCAAT----------------------GGGTCTGAGGGACGGGGGGA--------CTGGGGT
s panTro4.chr19                  59988333 384 +  63644993 aagggagttttaaagacagagctttcaactctgacctgtgaacaagtatgacatcaaatgtactgttcgttgctattattCTGTTGCTACAAGGCAGACGGTTA-GTTTCCCGGCTCCCCTGCAGTACCCCCAG-CCCCTCCTAGATCTGTCTGCCAGCCCCACCCCGGGGTCACTCCAGCCAGGCTGTGCCAGGTGAATGCTCAGGTAT------GCG-----------GAGGCGGAGGCAGGACGGCCCTGGGAGGGAGCAGG-AGGAGGGGCCGGAAGCCTG------GAAGGGAAAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTAAGGAGATccgggtccggagagaagggggccggggcttgaccaat----------------------gggtctgagggacgggggga--------ctggggt
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56944083 383 +  60714840 aagggagttttaaagacagagctttcaactctgacctgtgaacaagtgtgacatcaaatgtactgttcgttgttattaGTCTGTTGCTACAAGGCAGATGGTTA-GTTTCCCGGCTCCCCTGCAGTCCCCCCAG-CCCCTCCTAGATCTGTCTGCCAGCCCCGCCCCGGGGTCACTCCAGCCAGGCTGTGCCAGGTGAATGCTCAGGTAT------GCG-----------GAGGCGGAGGCAGGACGGCCCTGGGAGGGAGCAGG-AGGAGGGGCCGGCAGCCTG------GAAGGGAAAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTAAGGAGATccgggtccggagagaa-ggggccggggcttgaccaat----------------------gggtctgagggacgagggga--------ctggggt
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103411948 379 - 106955855 aagggagttttaaagacagagctttcaactctgacccgtgaacaagcgtgacatcaaatgtactgttcgttgttattattCTGTTGCTACAAGGCA----GTTA-GTTTCCCGGCTCCCCTGCAGTCCCCCCAG-CCCCTCCTAGATATGTCTGCCAGCCCCGCCCTGGGGTCACTCCAGCCAGGCTGTGCCAGGTGAATGCTCAGGTAT------gcg-----------gaggcggaggcaggacggccctggcagggagcagg-aggaggGGCCAGCAGCCTG------GAAGGG-AAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTAAGGAGATccgggtctggagagaagggggccggggcttgaccaac----------------------gggtgtgcgggaggaggggc--------tgcgggc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60721460 372 +  64156825 aagggagttTTAAAGACAGAGCTTTCAACTCTGACCTGTGAACAAGTGTGACATCAAATTTACTGT---TTGCTATTAGTCTGTTGTTACGAGGCAGAG----A-GTTTCCCGGCTCCCCTGCAGT-----CAG-CCCCTCCTGGATCTGTCTGCCAGCCCCGCCCCTGGGTCACTCCAGCCAGGCTGTGCCAGGTGAACGCTCAGGTAT------GCG-----------GAGGCGGAGGCAGGACAGCCCTGGGAGGGAGCAGG-AGGAGGGGCCGGCAGCCTG------GAACGGAAAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTGAGGAGATccgggttcagagagaaggaggccgggatttgaccaat----------------------gggtctgagggagaagggga--------ctggggt
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55879300 376 +  59248254 aagggagttttaaagacagagctttcaactctgacctgtgaacaagtgtgacatcaaatttactgt---ttgttattaGTCTGTTGTTACGAGGCAGAGAGTTA-GTTTCCCGGCTCCCCTGCAGT-----CAG-CCCCTCCTGGATCTGTCTGCCAGCCCCGCCCCTGGGTCACTCCAGCCAGGCTGTGCCAGGTGAACGTTCAGGTAT------GCG-----------GAGGCGGAGGCAGGACAGCCCTGGGAGGGAGCAGG-AGGAGGGGCCGGCAGCCTG------GAACGGAAAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTGAGGAGATCCGGGTTCagagagaaggaggccgggatttgaccaat----------------------gggtctgagggagaagggga--------ctggggt
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47967406 376 +  51301725 AAGGGAGTTTTAAAGACAGAGCTTTCAACTCTGACCTGTGAACAAGTGTGACATCAAATTTACTGT---TTGTTATTATTCTGTTGTTACAAGGCAGAGAGTTA-GTTTCCCGGCTCCCCTGCAGT-----CAG-CCCCTCCTGGATCTGTCTGCCAGCCCCGCCCCTGGGTCACTCCAGCCAGGCTGTGCCAGGTGAACGCTCAGGTAT------GCG-----------GAGGCGGAGGCAGGACGGCCCTgggagggagcagg-aggaggggccGGCAGCCTG------GAACGGAAAGGACAGCGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTGAGGAGATCCGGGTTCAGAGAGAAGGAGGCCGGGATTTGACCAAT----------------------GGGTCTGAGGGAGAAGGGGa--------ctggggt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47668146 379 +  50890351 aagggagttttaaagacagagctttcaactctgacctgtgaacaagtgtgacatcaaatttactgtttgttgttattattCTGTTGTTACAAGGCAGAGAGTTA-GTTTCCCGGCTCCCCTGCAGT-----CAG-CCCCTCCTGGATCTGTCTGCCAGCCCCGCCCCTGGGTCACTCCAGCCAGGCTGTGCCAGGTGAACGCTCAGGTAT------GCG-----------GAGGCGGAGGCAGGATGGCCCTGGGAGGGAGCAGG-AGGAGGGGCCGGCAGCCTG------GAACAGAAAGGACAGTGGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCAGGTGAGGAGATCCGGGTTCagagagaaggaggccgggatttgaccaat----------------------gggtctgagggaggagggga--------ctggggt
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     74908 414 +    138250 CAGGAAGTTTT-AAGACAGAGCTTTCAACTCTGACCTGTGAACAAGCCTGACATCAAAT-TACAATTTGTTGTTGTTATTCTGCTGTTACAAGGCAGACAGTTAGGTTTCCTGGATCCCCTGCGGTCCTCCCAGCCCCCTCCTAGATCTGTCTGCCAGCCCCGCCC-AAGGCCACTCCAGCCAGGCGGTGCCAGGTGAATGCTCAGGTAT------GCGGAGGCGGAGGCGAGGCGGAGGCAGGATGGCCCTGGGAGGGAGCAGG-AGGAGGGGCCGGCAGCCTG------GAAGGAAAAGGACAGCAGAGAGCAGGG------------------------CAGAGCCTGA-GCAGGCCGGTGAGGAGATCCAGGTCAGGAGAGAA-GGGCCGGgggtctgaggaaggaggggttgaccctggacaccagggtctgagagaagagggg---------ctggggt
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20149870 394 - 122678785 AAGAGGGTATCTGAGGCAGAGCTGTCGGCGCTGA-----GAACAAGTGTGACATCAGAT-TACTTGTCCTTGAGCTGA---TGTTGTTATGACAGAGACAGTCACAGTTTGTGGCTCCCCCG---------CAC-CCCAGCCCGGATGTCTGTGCCAGCCCCGCCC-AGGGCCACCGCTGCTGGGCTGTGCCAGGTGAGTGCTCAGGTAT------GCG-----------GAGGCAGAGGCGGGGTGGCCT--GGAGGGAGCAGGAAGGAGGGGCCGGCATTCCGCATTCTGGACTCAGGGGACAGCAGAGAGCTGGGCCTCTCCGTGCCACCGCCACCAGACAGAGCCTGACGGTGGCAGGTGAGGAA----GGGGCTAGCCAGGAGGGGCTGGAGGTCCG----------------------------GAGTCCCAAGGAGCAGGCGGCCAGGACTCTGGGGT
i canFam3.chr1                  I 467 C 0

a score=91807.000000
s hg38.chr19_GL949751v2_alt        994358 46 +   1002683 CTGGACTccaggg--------------------------tctcagggaggacgggctgggggtctgaactcc------------
s panTro4.chr19                  59988717 46 +  63644993 ctggactccaggg--------------------------tctcagggaggaggggctgggggtctggactcc------------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56944466 46 +  60714840 ctggactccaggg--------------------------tctcagggaggaggggctgggggtctggactcc------------
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103412327 46 - 106955855 ctggactcctggg--------------------------tctgagggaggaggggctgcgggcttggactCC------------
i nomLeu3.chr10                 C 0 M 627
s rheMac3.chr19                  60721832 46 +  64156825 ctggactcctggg--------------------------tctgagggaggaggggctgggggcctggactcg------------
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55879676 45 +  59248254 ctggactcctggg--------------------------tctgagggaggagggact-ggggtctggactcc------------
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47967782 45 +  51301725 ctggactcctggg--------------------------tctgagggaggagggact-ggcgtctggactcc------------
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     75322 45 +    138250 ctggacacctggg--------------------------tctcatggaggaggggct-ggggtctggactct------------
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150264 84 - 122678785 CCAGACACCAGGAAGGCTGGCAGACATAAACCCTTGAGTCCTGAAGAGGTAAGGGCTGGGAGATTGGCCCCATACTGAGGTCAC
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47668525  0 +  50890351 C

a score=35117.000000
s hg38.chr19_GL949751v2_alt        994404 24 +   1002683 cgggtctgaggga------------------ggagggcctgg-
s panTro4.chr19                  59988763 24 +  63644993 tgggtctgaggga------------------ggagggcctgg-
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56944512 24 +  60714840 tgggtctgaggga------------------ggaggggctgg-
i ponAbe2.chr19                 C 0 M 415
s rheMac3.chr19                  60721878 24 +  64156825 tgggtctgaggga------------------ggagggattgg-
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55879721 22 +  59248254 tgggtctgaggga------------------ggaggggct---
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47967827 24 +  51301725 tgggtctgaggga------------------ggaggggctgg-
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     75367 22 +    138250 tgggtctgaggga------------------gaagggtct---
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150348 43 - 122678785 AGTGTCTGAGGAATTGGATGAATGACTCTCTGAGGGGACTTGG
i canFam3.chr1                  C 0 C 0
e nomLeu3.chr10                 103412373 627 - 106955855 M
e chlSab2.chr6                   47668525  0 +  50890351 C

a score=39442.000000
s hg38.chr19_GL949751v2_alt        994428 41 +   1002683 ----------------------ggtcctggactcctaggtctgagggagga-ggggctgagggc-
s panTro4.chr19                  59988787 41 +  63644993 ----------------------ggtcctggactcctaggtctgagggagga-ggggctgagggc-
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60721902 40 +  64156825 ----------------------gggcctggactcccgggtct-agggagga-gggattgggggc-
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55879743 40 +  59248254 ----------------------gggcctggactcctgggtctgagggagga-gggact-ggggt-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47967851 41 +  51301725 ----------------------gggtctggactcctgggtctgaaggaggaggggact-ggggt-
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     75389 41 +    138250 ----------------------agccctggacccctaagtctgaaggagga-gggattgggggc-
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150391 64 - 122678785 AGTCTTTGGGTCCAGAAGCTCTGAGCCTGAATTCCTGGGCCCTAGAGGAGATGAGGCT-GGGACA
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e nomLeu3.chr10                 103412373 627 - 106955855 M
e chlSab2.chr6                   47668525  0 +  50890351 C

a score=103139.000000
s hg38.chr19_GL949751v2_alt        994469  65 +   1002683 ctggactcctgg-------------------------------------gtc--------------------------------------------tgagggaggaggagat-ggggcctggactcct-gggtctgagggaggagtgg
s panTro4.chr19                  59988828  64 +  63644993 ctggattcctgg-------------------------------------gtc--------------------------------------------tgagggaggggctg---ggggcctggacccccagggtccaagggaggagggg
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60721942  66 +  64156825 ctggactcctgg-------------------------------------atc--------------------------------------------tgagggaggagggattgggggcctggactcct-gggtctgagggaggaggag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55879783  66 +  59248254 ctggactcctgg-------------------------------------gtc--------------------------------------------tgaaggaggaggggactggggtctggactcct-gggtctgagggaggagggg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47967892  66 +  51301725 ctggactcctgg-------------------------------------gtc--------------------------------------------tgagggaggaggggctgggggcctggactcct-gggtctgagggaggagggg
i papAnu2.chr19                 C 0 M 829
s chlSab2.chr6                   47668525  63 +  50890351 ctggactcctgg-------------------------------------gtc--------------------------------------------tgagggaggaggggct--gggcctggactcct-gggtct-agggaggagggg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     75430  66 +    138250 ctgaactcctgg-------------------------------------gtc--------------------------------------------tgagggaggaggggctggtgacctggactcct-gggtctgagggaggagggg
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150455 146 - 122678785 CAGGATCACTGGAGAGAGGAAGCAAAGTGGGGTACACATAGATTAGGGAGTCAAATGCATTGATCCCTGAGAGATTTGGGGGGGCAGCATACTAGGTGAGGGAAGAGGGGCTGGGGGGCCAGACTCCT-GGGTCTGAGGGAGGAGGG-
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e nomLeu3.chr10                 103412373 627 - 106955855 M

a score=80701.000000
s hg38.chr19_GL949751v2_alt        994534 61 +   1002683 actggggtctggactcctgggtctgagggaggaggggactggggtctggactcc--tgggtct
s panTro4.chr19                  59988892 61 +  63644993 ctgggggcctggtctcctgagtctaagggaggaaggattgggggcctggactcc--tgggtct
i panTro4.chr19                 C 0 I 1
s rheMac3.chr19                  60722008 60 +  64156825 ctggggaccagggctcctgggtctgagggaggaaggg-ctggggcctggactcc--agggtct
i rheMac3.chr19                 C 0 I 1
s macFas5.chr19                  55879849 61 +  59248254 ctgggggcctggactcgtgggtctgaaggaggaggggactggggtctggactcc--tgggtct
i macFas5.chr19                 C 0 I 292
s chlSab2.chr6                   47668588 63 +  50890351 ctgggggtctggactcctgggtctgagggtggagggactgggggtctggacgtccgtgggtcg
i chlSab2.chr6                  C 0 I 1
s calJac3.chr22_GL285922_random     75496 60 +    138250 ctggaggcctggactcctgagtctgagggaggagggg-ctggggtctggactcc--tgggtct
i calJac3.chr22_GL285922_random C 0 I 1
s canFam3.chr1                   20150601 61 - 122678785 GCTGGGGTCTGGACTCCTAGGTCTGAGGGAGGAGGGGCTAGGGGCCTGGACTCC--ACAGTCT
i canFam3.chr1                  C 0 I 1
e ponAbe2.chr19                  56944536 415 +  60714840 M
e nomLeu3.chr10                 103412373 627 - 106955855 M
e papAnu2.chr19                  47967958 829 +  51301725 M

a score=26624.000000
s hg38.chr19_GL949751v2_alt        994595 22 +   1002683 aggg-------aagagggact--ggggcctg
s panTro4.chr19                  59988954 22 +  63644993 aggg-------aggaggggct--ggggCCTG
i panTro4.chr19                 I 1 M 797
s rheMac3.chr19                  60722069 22 +  64156825 aggg-------aggagggact--ggggcctg
i rheMac3.chr19                 I 1 C 0
s macFas5.chr19                  55880202 23 +  59248254 aggg-------aggaggggct-gggggcctg
i macFas5.chr19                 I 292 C 0
s chlSab2.chr6                   47668652 30 +  50890351 agggnnnnnnnnnnaggggct-gggggcctg
i chlSab2.chr6                  I 1 C 0
s calJac3.chr22_GL285922_random     75557 24 +    138250 aggg-------aggaggggtatgggggcctg
i calJac3.chr22_GL285922_random I 1 C 0
s canFam3.chr1                   20150663 23 - 122678785 AGGG-------AGAAGGGGCT-GGGGGTCTG
i canFam3.chr1                  I 1 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e nomLeu3.chr10                 103412373 627 - 106955855 M
e papAnu2.chr19                  47967958 829 +  51301725 M

a score=29552.000000
s hg38.chr19_GL949751v2_alt        994617 25 +   1002683 gacttctgggtctgagggaggaggg
s rheMac3.chr19                  60722091 25 +  64156825 gacttctgggtctgagggagggggg
i rheMac3.chr19                 C 0 M 560
s macFas5.chr19                  55880225 25 +  59248254 gactcctgggtctgagggaggaggg
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47668682 25 +  50890351 gactcctgggtctgagggaggaggg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     75581 25 +    138250 aactcctgggtctgagggaggaggg
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150686 24 - 122678785 GACTACT-GGTCAGAGGGAGGAGGG
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e nomLeu3.chr10                 103412373 627 - 106955855 M
e papAnu2.chr19                  47967958 829 +  51301725 M
e panTro4.chr19                  59988976 797 +  63644993 M

a score=1500.000000
s hg38.chr19_GL949751v2_alt        994642 1 +   1002683 g
s nomLeu3.chr10                 103413000 1 - 106955855 g
i nomLeu3.chr10                 M 627 C 0
s macFas5.chr19                  55880250 1 +  59248254 g
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47668707 1 +  50890351 g
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     75606 1 +    138250 g
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150710 1 - 122678785 G
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e papAnu2.chr19                  47967958 829 +  51301725 M
e rheMac3.chr19                  60722116 560 +  64156825 M
e panTro4.chr19                  59988976 797 +  63644993 M

a score=2100.000000
s hg38.chr19_GL949751v2_alt        994643 1 +   1002683 c
s nomLeu3.chr10                 103413001 1 - 106955855 c
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60722676 1 +  64156825 c
i rheMac3.chr19                 M 560 C 0
s macFas5.chr19                  55880251 1 +  59248254 c
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47668708 1 +  50890351 c
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     75607 1 +    138250 c
i calJac3.chr22_GL285922_random C 0 I 287
s canFam3.chr1                   20150711 1 - 122678785 C
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e papAnu2.chr19                  47967958 829 +  51301725 M
e panTro4.chr19                  59988976 797 +  63644993 M

a score=306149.000000
s hg38.chr19_GL949751v2_alt        994644 218 +   1002683 tgggggcctggactcctgggcctgagggagg-aggggctggggcctggatgcctgcattgagggaggag--gctggggTAGGAATTAGAGGCTCCT----ACTGGCCAGGCCTTCACATGTTTGCTGGCTCCCAGGGCACCTCCAGGTGGGCAGGAGCT--ACCA--CTCAGCACCATGAGCACCGCCACAGGGTAAGCGCCCCCGGACCCCAGGTCCCA-GCCCCAGCA-
s nomLeu3.chr10                 103413002 217 - 106955855 tgggggcctgaactccaggatctgagggagg-aggggctggggcctggctgcctgcattgagggaggag--gctggggTAGGAGTTAGAGGCTCCT----ACTGGCCAGGCCCTCACATCTTTGCTGGCTCCCAGGGCACCTCCAGGTGGGCAGGAGCT--TCCA--CTCAGCACCATGAGCACCGCCACAGGGTAAGTGCCCC-GGACCCCGGGTCCCA-GCCCCAGCG-
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60722677 218 +  64156825 tgggggtctggactcctgggtctgagggagg-agggactggggcttggatgcctgtgttgagggaggag--gctggggTAGGAATTAGAGGCTCCT----ACTGGCCAGGCCCTCACATCTTTGCTGGCTCCCAGGGCACCTCCAGGTGGGCAGGAGCT--CCCA--CTCAGCACCATGAGCACCGCCACGGGGCAGGTCCCCCTGGCccccaggcccca-gccccagcc-
i rheMac3.chr19                 C 0 I 18
s macFas5.chr19                  55880252 219 +  59248254 tgggggcctggactcctgggtctgagggagg-aggggccggggcttggatgcctgtgttgagggaggag--gctggggTAGGAATTAGAGGCTCCT----ACTGGCCAGGCCCTCACATCTTTGCTGGCTCCCAGGGCACCTCCAGGTGGGCAGGAGCT--CCCA--CTCAGCACCATGAGCACCGCCACCGGGTAAGTGCCCCTGGCccccaggccccaggccccagcc-
i macFas5.chr19                 C 0 I 19
s chlSab2.chr6                   47668709 216 +  50890351 t--gggcctggactcctgggtct-agggagg-aggggctggggcctgaatgcctgtgttgagggaggag--gctggagTAGGAATTAGAGGCTCCT----ACTGGCCAGGCCCTCACATCTTTGCTGGCTCCCAGGGCACCTCCAGGTGGGCAGGAGCT--CCCA--CTCAGCACCATGAGCACCGCCACTGGGTAAGTGCCCCCGGCccccaggccccaggccccagcc-
i chlSab2.chr6                  C 0 I 19
s calJac3.chr22_GL285922_random     75895 211 +    138250 tggtgacctggactcctggatct-agggagg-aggagctgggacctggacACCTGC-TTGAGGGAGGAG--GCTAGGGTAGGAATCAGAGGCTCCC----ACTGTCTGGGCCCTCACATCTTTGCTGCCTCCCAGGGCACCTCCAGGTGGGAAAAGGCTTCCCCT--CTCAGCACCATGAGCACCACCACCGGGTAAGTGCccctggccccca--------gccccagcc-
i calJac3.chr22_GL285922_random I 287 C 0
s canFam3.chr1                   20150712 223 - 122678785 TGGGGGCCTGGATTCCTAGGTCTGAGGGAGGAAAGGGCTGGGGTCTGGACTCCTGGTCAGAGGGAGGAGGAGCAGGGGCCAAAATCACAGATACCTCAGGCCAGGTCAGTCCCTCACCTCTTTGATGGTTTCCAGGGCACCTCCAGGT-GGCAGGAGCT--CCCATTCTCCACACCATGAGCACTAGCACCGGGTAAGTGTCCCTTGTCCCC---TCCC--CCCCCAGGCT
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56944536 415 +  60714840 M
e papAnu2.chr19                  47967958 829 +  51301725 M
e panTro4.chr19                  59988976 797 +  63644993 M

a score=39489.000000
s hg38.chr19_GL949751v2_alt        994862 24 +   1002683 CGCCTCCCG------------------------CCTCCCCTCGCCTCC
s ponAbe2.chr19                  56944968 24 +  60714840 CGCCTCCCG------------------------CCTCCCCTCGCCTCC
i ponAbe2.chr19                 M 415 C 0
s nomLeu3.chr10                 103413219 24 - 106955855 CGCCTCCCG------------------------CCTGCCCTCGCCTCC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60722913 24 +  64156825 CGCCTCCCG------------------------CCTCCGCTCGCCTCC
i rheMac3.chr19                 I 18 C 0
s macFas5.chr19                  55880490 24 +  59248254 CGCCTCCCG------------------------CCTCCCCTCGCCTCC
i macFas5.chr19                 I 19 C 0
s chlSab2.chr6                   47668944 24 +  50890351 CGCCTCCCG------------------------CCTCCCCTCGCCTCC
i chlSab2.chr6                  I 19 C 0
s calJac3.chr22_GL285922_random     76106 48 +    138250 cgcctcccatctgcgtctgcccctgcccctgcccctgcccctgcctcc
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150935 24 - 122678785 GCCCTGTCA------------------------CCTCTGCCAGCCTCG
i canFam3.chr1                  C 0 C 0
e papAnu2.chr19                  47967958 829 +  51301725 M
e panTro4.chr19                  59988976 797 +  63644993 M

a score=25424.000000
s hg38.chr19_GL949751v2_alt        994886 9 +   1002683 TCACCCACA
s ponAbe2.chr19                  56944992 9 +  60714840 TCACCCACA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103413243 9 - 106955855 TCACCCACA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60722937 9 +  64156825 TCACCCACA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55880514 9 +  59248254 TCACCCACA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47968787 9 +  51301725 TCACCCACA
i papAnu2.chr19                 M 829 C 0
s chlSab2.chr6                   47668968 9 +  50890351 TCACCCACA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     76154 9 +    138250 tcacccaca
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150959 8 - 122678785 -TCCCTGCA
i canFam3.chr1                  C 0 C 0
e panTro4.chr19                  59988976 797 +  63644993 M

a score=14324.000000
s hg38.chr19_GL949751v2_alt        994895 5 +   1002683 CCCGC
s panTro4.chr19                  59989781 5 +  63644993 CCCGC
i panTro4.chr19                 M 797 C 0
s ponAbe2.chr19                  56945001 5 +  60714840 CCCGC
i ponAbe2.chr19                 C 0 I 5
s nomLeu3.chr10                 103413252 5 - 106955855 CCCGC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60722946 5 +  64156825 CCCGC
i rheMac3.chr19                 C 0 I 5
s macFas5.chr19                  55880523 5 +  59248254 CCCGC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47968796 5 +  51301725 CCCGT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47668977 5 +  50890351 CCCGC
i chlSab2.chr6                  C 0 I 5
s calJac3.chr22_GL285922_random     76163 4 +    138250 cctg-
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20150967 5 - 122678785 CCCAC
i canFam3.chr1                  C 0 C 0

a score=-872.000000
s hg38.chr19_GL949751v2_alt        994900 15 +   1002683 TTGCGGCAGCCCAGA
s panTro4.chr19                  59989786 15 +  63644993 TTGCGGCAGCCCAGA
i panTro4.chr19                 C 0 C 0
s nomLeu3.chr10                 103413257  3 - 106955855 ------------AGA
i nomLeu3.chr10                 C 0 I 2
s macFas5.chr19                  55880528  3 +  59248254 ------------AGA
i macFas5.chr19                 C 0 I 2
s papAnu2.chr19                  47968801  3 +  51301725 ------------AGA
i papAnu2.chr19                 C 0 I 2
s calJac3.chr22_GL285922_random     76167  4 +    138250 -----------cAGA
i calJac3.chr22_GL285922_random C 0 I 2
s canFam3.chr1                   20150972  8 - 122678785 -------AACTGACA
i canFam3.chr1                  C 0 C 0
e ponAbe2.chr19                  56945006  5 +  60714840 I
e chlSab2.chr6                   47668982  5 +  50890351 I
e rheMac3.chr19                  60722951  5 +  64156825 I

a score=717039.000000
s hg38.chr19_GL949751v2_alt        994915 228 +   1002683 CTGTTTGCGGCGGCCCAGACTCTGGCCCAAGCCCCGACACTCAGGAGGAAGCCAGAGCCTCTCTCCTCCCTGCCCAGCCTGGggttaggggcccccactgcagagc-agacaggcctgagctccagttc-ggccctcacactcagtgctgat-gtaaccctgg---tcagaggacatcacctcctggagcctcagcccctcctctgtgacacagggacaatgttgaaaaattgg-------------
s panTro4.chr19                  59989801 228 +  63644993 CTGTTTGCGGCGGCCCAGACTCTGGCCCAAGCCCGGACACTCAGGAGGAAGCCAGAGCCTCTCTCCTCCCTGCCCagcctggggttaggggcccccactgcagagc-agacaggcctgagctccagttt-ggccctcacactcagtgctgat-gtaaccctgg---tcagaggacatcacctcctggagcctcagcccctcctctgtgacacagggacaacgttgaaaaattag-------------
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56945011 228 +  60714840 CTGTTTGCGCCAGCCCAGACTCTGGCCCAAGCCCCGACACTCAGGAGGAAGCCAGAGCCGCTCCCCTCCCTACCCagcctggggttaggggcccccactgcagagc-agacaggcctgagctccagttc-ggccctcacactcagtgctgat-gtaacccttg---tcagaggatatcacctcttggagcctcagcccctcctctgtgacacagggacaacgttgaaaaattgg-------------
i ponAbe2.chr19                 I 5 C 0
s nomLeu3.chr10                 103413262 227 - 106955855 CTGTTTGCGGCAGCCCAGACTCTGGCCCAAGCCCGGACGCTCAGGAGGAAGCCAGAGCTGCGCTCCTCCCTGCCCagcctggggttaggggcccccactgcagagc-agacaggcctgagctccagttc-ggccctcacactcagtgccaat-gtaaccctgg---tcagcggacgtcacctcttggagcctcag-ccctcctctgtgacacagggacaatgtcgaaaaactgg-------------
i nomLeu3.chr10                 I 2 C 0
s rheMac3.chr19                  60722956 228 +  64156825 CTGTTTCTGGCAGCCCAGACTCTGGCCCAAGCCCGGACACTCAGGAGGAAGCCAGAGCCGCTCTCCTCCCTGCCCagcctggggttaggggcccccactgtagagc-agacaggcctgtgctccagctc-ggccctcacactccatgctgat-gtaaccccgg---tcaaaggacatcacctcttggagcctcagcccctcctctgtgacacagggacaattttgaaacattgg-------------
i rheMac3.chr19                 I 5 C 0
s macFas5.chr19                  55880533 228 +  59248254 CTGTTTCTGGCAGCCCAGACTCTGGCCCAAGCCCGGACACTCAGGAGGAAGCCAGAGCCACTCTCCTCCCTGCCCagcctggggttaggggcccccactgtagagc-agacaggcctgtgctccagctc-ggccctcacactccatgctgat-gtaaccccgg---tcaaaggacatcacctcttggagcctcagcccctcctctgtgacacagggacaattttgaaacattgg-------------
i macFas5.chr19                 I 2 C 0
s papAnu2.chr19                  47968806 228 +  51301725 CTGTTTCTGGCAGCCCAGACTCTGGCCCAAGCCCGGACACTCAGGAGGAAGCCAGAGCCACTCTCCTCCCTGCCCAGCCTGGGGTTAGGGGCCCCCACTGTAGAGC-AGACAGGCCTGAGCTCCAGCTC-GGCCCTCACACTCCGTGCTGAT-GTAACCCCGG---TCAAAGGACATCACCTCTTGGAGCCTCAGCCCCTCCTCTGTGACACAGGGACAATTTTGAAACATTGG-------------
i papAnu2.chr19                 I 2 C 0
s chlSab2.chr6                   47668987 228 +  50890351 CTGTTTCTGGCAGCCCAGACTCTGGCCCAAGCCCGGACACTCAGGAAGAAGCCAGAGCCACTCTCCTCCCTGCCCagcctggggttaggggcccccactgtagagc-agacaggcctgagctccagctg-ggccctcacactccgtgctgat-gtaaccctgg---tcaaaggacatcacctcttggagcctcagcccctcctctgtgacacagggacaattttgaaacattgg-------------
i chlSab2.chr6                  I 5 C 0
s calJac3.chr22_GL285922_random     76173 227 +    138250 CTGTTTCCTGCAGTGCAGACTATGG-----GCCTGGACACTCAGGAGGAAGCCAGAGCCGCTCTCCTCCCTGCCCAGCCTGTGGTCaggagcacccgctgtagagc-agacaggcctgagctccagctg-ggcactcatactcagggctgatcttaaccctagtcatcaaaggacatcacctcttggagcctcagcccctcctctgtgaaacagggacaatTTTGAAAAACTGG-------------
i calJac3.chr22_GL285922_random I 2 I 1229
s canFam3.chr1                   20150980 211 - 122678785 ---TTTACAGCAGCCCAG------------GTCTGGACACTGAGAAGGAAGCCTGAGCTGCTC-CTTCCCTG-CCGGTCTATGCT--GGAGCTACTGctccagtgcaagaca--cctgggtccaaacccagacactaacactcaggg-tggt-gtgactctaa---cca------acaacct----gagcctgagcccctcctctgtgaaagagggacaataaaaaaaaaataaaaaaaaaaaaaaG
i canFam3.chr1                  C 0 C 0

a score=331082.000000
s hg38.chr19_GL949751v2_alt        995143 126 +   1002683 agggatagt------gcattacaggacttagc----------tgaccacctcactgacagcaggtgctcaactcataggagtcgctattGCGATTGTTATGTTGTTAGTAAATATTAACCCTTTGCTAGAAAATCAGGGCTG
s panTro4.chr19                  59990029 126 +  63644993 agggatagt------gcattacaggacgtagc----------cgaccacctcactgacagcaggtgctcaactcataggagccgctattGCGATCGTTATGTTGTTAGTAAATATTAACCCTTTGCTAGAAAATCAGGGCTG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56945239 126 +  60714840 agggatagt------gcattacaggacttagc----------cgcccacctcactgacagcaggtgctcaactcataggagccgctattgtGATTGTTATGTTGTTAGTAAATATTAACCCTTTGCTAGAAAATCAGGGCTG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103413489 125 - 106955855 agggatagt------gcattacaggacttagc-----------gaccacctcactgacagcaggtgctcaactcataggagccgctattGCGATTGTTATGTTGTTAGTAAATATTAACCCTTTGCTAGAAAATCAGGGCTG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60723184 126 +  64156825 tgggatagt------gcattacaggacttagc----------cggccacctcactgacagccggtgctcagctcataggagcctctgttGGGATTGTTATCTTGTTAGTAAATAGTAACCCTTTGCTAGAAAATCAGGACTG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55880761 126 +  59248254 tgggatagt------gcattacaggacttagc----------cggccacctcactgacagccggtgctcagctcataggagcctctgttGGGATTGTTATCTTGTTAGTAAATAGTAACCCTTTGCTAGAAAATCAGGACTG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969034 126 +  51301725 TGGGATAGT------GCATTACAGGACTTAGC----------CGGCCACCTCACTGACAGCCGGTGCTCAGCTCATAGGAGCCTCTGTTGGGATTGTTATCTTGTTAGTAAATAGTAACCCTTTGCTAGAAAATCAGGACTG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47669215 126 +  50890351 tgggatagt------gcattacaggacttagc----------cgaccacctcactgacagccggtgctcagctcataggagcctctgttGGGATTGTTATCTTGTTAGTAAATAGTAACCCTTTGCTAGAAAATCAGGACTG
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20151191 140 - 122678785 AGGGACAATATGAGAGCCTGACAGG--TTAATGAAGGTACAAGGCTTATCTGACTCACAGCAGGTACTCCACTCACAGGAACTGCCACTGCGGCTGTTAGCGTGTTATTAAATATTGACTCTTTGCAGGCAAATCTGGGCTG
i canFam3.chr1                  C 0 I 208
e calJac3.chr22_GL285922_random     76400 1229 +    138250 I

a score=273950.000000
s hg38.chr19_GL949751v2_alt        995269 101 +   1002683 TTTATAATGAAGACTCAAGTCCCCCAGAGTAAGCAGGGAGAAAAACAATGAGAGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGCTCTCTGGCCCAGA
s panTro4.chr19                  59990155 101 +  63644993 TTTATAATGAAGACTCAAGTCCCCCAGAGTAAGCAGGGAGAAAAACAATGAGAGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGCTCTCTGGCCCAGA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56945365 101 +  60714840 TTTATAATGAAGACTCAAGTCCCCCAGAGTAAGCAGGGAGAAAaacaatgagagatgagtcaaaatacctgcatggtaggtagtgagctctctggcccaga
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103413614 101 - 106955855 TTTATAATGAAGACTCGAGTCCCCCAGAGTAAGCAGGGAGAAAAACAATGAGAGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGCTCTCTGGCCCAGA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60723310 101 +  64156825 TTCATAATGAAGACTCAAGTCTCCTAGAGTAAGCAGGGAGAAAAACAATGAGCGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGTTCTCTGGCCCAGA
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55880887 101 +  59248254 TTCATAATGAAGACTCAAGTCTCCTAGAGTAAGCAGGGAGAAAAACAATGAGCGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGTTCTCTGGCCCAGA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969160 101 +  51301725 TTCATAATGAAGACTCAAGTCCCCCAGAGTAAGCAGGGAGAAAAACAATGAGCGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGTTCGCTGGCCCAGA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47669341 101 +  50890351 TTCATAATGAAGACTCCAGTCCCCCAGAGTAAGGAGGGAGAAAAACAATGAGCGATGAGTCAAAATACCTGCATGGTAGGTAGTGAGTTCTCTGGCCCAGA
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20151539  92 - 122678785 TTTCTAATAAAG-TTCAAGTCTCCTGGGGTGAGCAAGGAGAAGCCCAAACAGAGGCCCCTGTGAATAGCTGCAT--------GTAAGTTCCCCAGCACAGC
i canFam3.chr1                  I 208 C 0
e calJac3.chr22_GL285922_random     76400 1229 +    138250 I

a score=208081.000000
s hg38.chr19_GL949751v2_alt        995370 59 +   1002683 GGTAATCAAATTGTGGTGACATCAGACTGGCAGGAGCAGGATGAGGAACAGGAGTTTGG
s panTro4.chr19                  59990256 59 +  63644993 GGTAATCAAATTGTGGTGACATCAGACTGGCAGGAGCGGGATGAGGAACAGGAGTTTGG
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56945466 59 +  60714840 ggtaatcaaATTGTGGTGACATCAGACTGGCAGGAGTGGGATGAGGAACAGGAGTTTGG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103413715 59 - 106955855 GGTAATCAAATTGTGATGACATCAGACTGGCAGGAGCGGGATGAGGAACAGGAGTTTGG
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60723411 57 +  64156825 GGTAATCAAAT--TGGTGACATCAGACTGGCAGGAGCGGGATGAGGAACAGGAGTTTGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55880988 57 +  59248254 GGTAATCAAAT--TGGTGACATCAGACTGGCAGGAGCGGGATGAGGAACAGGAGTTTGG
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969261 57 +  51301725 GGTAATCAAAT--TGGTGACATCAGACTGGCAGGAGCGGGATGAGGAACAGGAGTTTGG
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47669442 59 +  50890351 GGTAATCAAATTGTGGTGACATCAGACTGGCAGGAGCGGGATGAGGAATAGGAGTTTGG
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     77629 58 +    138250 GGTAATCAAATTGTGGTGACATCAGACTGGCAGGAGCAGGATGAGGAA-AAGACTTTGG
i calJac3.chr22_GL285922_random I 1229 I 474
s canFam3.chr1                   20151631 59 - 122678785 AGTAATCAAACTGTGTGGAGATCTGACTGGCAGGAGAAGGATGAGGAGCAGAGATTTGA
i canFam3.chr1                  C 0 C 0

a score=1545048.000000
s hg38.chr19_GL949751v2_alt        995429 507 +   1002683 GAAAAAGGGTTTTTCAGTTC----CCCTGACGCCA-CCTGATCGCTGAGCTTCTGTTATGTGCATGCAAGT-GGGGATTCAAGAAT--TCTTAGGAAAGGTAATCTTAGGAAGAAATTGAGGACGGG---AGGAGACAGAGAAGGATGTGGTTGGGAAGCACCTGGCCCATGGGAGTGGGAGGGGAAGCAGATAATTCCCTGTCTACTTCAGATACCACTAATGCTATTATAACCATTCCcatttattgagcaacttctgtgtgctaagccctgGCAGCATCTTAAGAATGATAataacagttattgaggcttcaaaatacttcacctgcatcatctgactgaatttgcccaacagccctaccagatgg--------------tta----ctacgttacagaaagaaaaactgaggcaggagagattaaatcctcttctgaaggtcttatggcaaggaggcagtagacagagggtttgaatc-------------ccggactATGCCATGGTAGAGATCACACT-CCCCTACCACCCAGCACCACCGCCT
s panTro4.chr19                  59990315 507 +  63644993 GAAAAAGGGTTTTTCAGTTC----CCCTGACGCCA-CCTGATCGCTGAGCTTCTGTTATGTGCGTGCAAGT-GGGGATTCAAGAAT--TCTTAGGAAAGGTAACCTTAGGAAGAAATTGAGGACGGG---AGGAGACAGAGAAGGATGTGGTTGGGAAGCGCCTGGCCCATGGGAGTGGGAGGGGAAGCAGATAATTCCCTGTCTACTTCAGATACCACTAATGCTATTGTAACCATTCccatttattgagcaacttctgtgtgctaagccctggcagcatcttaAGaatgataataacagttattgaggcttcagaatacttcacctgcatcatctgactgaatttgcccaacagccctaccagatgg--------------tta----ctatgttacagaaacaaaaactgaggcaggagagattaaatccccttctgaaggtcttatggcaaggaggcagtagacagagggtttgaatc-------------ccggactATGCCATGGTAGAGATCACAGT-CCCCTACCACCCAGCACCACCGCCT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56945525 506 +  60714840 G-AAAAGGCTTTTTCAGTTC----CCCTGACGCCA-CCTGATCGCTGAGCTTCTGTTATGTGCCGGCAAGTGGGGGATTCAAGAAT--TCTTAGGAAAGGTAACCTTAGGAAGAAATTGAGGACAGG---AGGAGACAGAGAAGGATGTGGCTGGGAAGCGCCTGGCCCATGTGAGTAGGAGGGGACGCAGATAATTCCCTGTCTACTTCAGATACCACTAATGCTATTGTAACCATTCccatttattgagcaacttctgtgtgctaagccctggcagcatcttaAGAATGATAataacagttatcgaggcttcaaaatacttcacctgcatcatctgattgaatttgcccaacagccctacgagatgg--------------tta----ctatgttacagaaagaaaaactgaggcaggagagattaaatccacttctcaaggtcttatgg-aaggaggcagtagacagaaggtttgaatc-------------cgggagtatgccatgatacagatcacact-cccctaccacccagcaccacCGCCT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103413774 516 - 106955855 GAAAAAGGGTTTTGCAGTTC----CCCTGACGCCA-CCTGATGGCTGAGCTTCTGTTATGTGCATGCAAGT-GGGGATTCAAGAAT--TCTTAGGAAAGGTAACCGTAGGAAGAAATTGAGAAC------AGGACACAGAGAAGGATGTGGCTGGGAAGCGCCTGGCCCATGGGAGTGGGAGGGGAAGCAGATAATTCCCTGTCTACTTCAGATACCACGAATGCTATTGTAACCATTCccatttattgagcaacttctgtgtgctaagccctggcagcatcttaAGAATGATAATAACAGTTACTGAGGCttcaaaatacttcacctccatcatctgattgaatttgcccaacagccctatcagatgg--------------tta----ctatgttacagaaagagaaactgaggtaggagagattaagtctcctcctcaaagtcttatggcaaggaggcagcgcacagagggtttgaatccaggactttgaatcaggactctgCCATGGTAGAGATCACACT-CCCTTACCACCCAGCACCACCG-CT
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60723468 505 +  64156825 GAAAAAGGGTTTATCAGTTC----CCCTGACGCCA-CCTGATCTCTGAGCTTCTGTTATGCGCATGGAAGT-GGGGATCCAAGAAT--TCTTAGGAAAGGTAACCTTAGGAAGAAATCAAGGACAAG---AGGAGACAGAGAGGGATGCGGCTGGGAAGCGCCTGGCCCATGGGGGTGGGAGGGGAAACAGATAATTCCCTGTCTACTTCAGATACTACTAATGCTATTGtaacaatccccatttattgagcaacttctgtgtgctaagccctggcagcatcttaAGAATGATAataacagttattgaggcttcaaaatacttcacctgcatcatctgactgaatttgcccaacagccctaccagatag--------------tta----ctatgttacagaaag--aaaccgaggca-gagagattaagtccccttctcaaggtcttatggcaaggaggcagtagacagaggatttgaatc-------------caggactatgccatggttgagaccacgctccccctaccacccagcaccaccGCCT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55881045 505 +  59248254 GAAAAAGGGTTTATCAGTTC----CCCTGACGCCA-CCTGATCTCTGAGCTTCTGTTATGCGCATGGAAGT-GGGGATCCAAGAAT--TCTTAGGAAAGGTAACCTTAGGAAGAAATCAAGGACAAG---AGGAGACAGAGAGGGATGCGGCTGGGAAGCGCCTGGCCCATGGGGGTGGGAGGGGAAACAGATAATTCCCTGTCTACTTCAGATACTACTAATGCTATTGTAACAATCCCcatttattgagcaacttctgtgtgctaagccctgGCAGCATCTTAAGAATGATAATAACAGTTATTGAGGCTTCAaaatacttcacctgcatcatctgactgaatttgcccaacagccctaccagatag--------------tta----ctatgttacagaaag--aaaccgaggca-gagagattaagtccccttctcaaggtcttatggcaaggaggcagtagacagaggatttgaatc-------------caggactatgccatggtcgagaccacgctccccctaccacccagcaccaccGCCT
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969318 506 +  51301725 GAAAAAGGGTTTATCAGTTC----CCCTGACGCCA-CCTGATCTCTGAGCTTCTGTTATGTGCGTGGAAGT-GGGGATCCAAGAAT--TCTTAGGAAAGGTAACCTTAGGAAGAAATCGAGGAcaag---aggagacagagagggatGCGGCTGGGAAGCGCCTGGCccatgggggtgggaggggaaacAGATAATTCCCTGTCTACTTCAGATGCTACTAATGCTATTGTAACAATCcccatttattgagcaacttcTGTGTGCTAAGCCCTGGCAGCATCTTAAGAATGATAATAACAGTTATTGAGGCTTCAAAATACTTCACCTGCATCATCTGACTGAATTTGCCCAACAGCCCTACCAGATAG--------------TTA----CTATGTTACAGAAAG--AAACCGAGGCAGGAGAGATTAAGTCCCCTTCTCAAGGTCTTATGGCAAGGAGGCAGTAGACAGAAGGTTTGAATC-------------CAGGACTATGCCATGGTAGAGACCACACTCCCCCTACCACCCAGCACCACCGCCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47669501 505 +  50890351 GAAAAAGGGTTTATCAGTTC----CCCTGACACCA-CCTGATCTCTGAGCTTCTGTTATGCGCATGGAAGT-GGGGATCCAAGAAT--TCTTAGGAAAGGTAACCTTGGGAAGAAATCGAGGACAAG---AGGAGACAGAGAGGGATGTGGCTGGGAAGCGCCTGGCCCATGGGGGTGGGA-GGGAAACAGATAATTCCCTGTCTACTTCAGATACTACTAATGCTGTTGTAACAATCCCcattgattgagcaacttctgtgtgctaagccctgGCAGCATCTTAAGAATGATAataacagttattgaggcttcaaaatacttcacctgcatcatctgactgaatttgcccaacagccccaccagatag--------------tta----ctatgttacagaaag--aaaccgaggcaggagagattaagtccccttctcaaggtctcatggcaaggaggcagtagacagaggatttgaatc-------------caggactATGGCATGGTGGAGACCACACTCCCCCTGCCACCCAGCACCGCCGCCT
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     78161 501 +    138250 GAAAAAGGGTTTTTCAGTAC----CCCCGACTCCACCCTTATCTCTGAGCTTCTGTTATTTACATGCAAGT-TGGAATTCAAGATTCCTCTTGGGAAAGGTAACCTTAGGAAGGAATTGGGGACAGA---AGGTGTCACAGAAGGATGTGGCTGGGAAGCGCCTGGCCCAGAGAAGTGGGAAGGGAAGAAGATAATT-CCTGTCTACTTCAGATACCACTAATGCTATagtaatgattcccatttattgagcaacttctgtgtgctaaaccctggcagcatcttaagaatgataataacagttattgaggcttcgaaatatgtcacctgcatcatc----tgaatttgcccaacagccttgctaggtag-----------------------atattacagaaggagaaactgaggcaggagagattaagacctcttctctaggtcttatgtcaaggaggcagtagacagagggtttgaatc-------------caggaccatgccacggccgagaccacactccccctaccacccagcaccaccGCCT
i calJac3.chr22_GL285922_random I 474 C 0
s canFam3.chr1                   20151690 437 - 122678785 TTCAAAGTATTTCTTGTCCCTCATCCCTGATCCTA-CCTGAGCTCTGAATTTCCATCATTTCT------GT-G---------GAAT--TCTTGGAGAAGTTGA-CTTAGAAGGA----GAGGCCAGGAGCAGGAGATGGAGAAGGATTTGGCTGGGAAGAGCCTGGCCCATGGGAGTAGGAGGGGG---AGATAAGTCTCTGTCTACACCAAAT---ACTAATGCTGTTGTAAAAAACCccatttactgagcacctactgtgtgctacccttt----gcatcgtagcactgacagtta-agttattgaggctgtgaaccctctcaac-------tctccatgaatcca-ccaacagctctaccagatggaggctattggataattaacccctatctcagagaaaaggaaaccaaggcgggagatattcagtctcctccccagggtcttatggcaagacagtatt-gacagaggatgccaag---------------------------------------------------------------------
i canFam3.chr1                  C 0 C 0

a score=323905.000000
s hg38.chr19_GL949751v2_alt        995936 176 +   1002683 GACCTGACCTGtctttttttttttttttttttttttgagatggagtctcactctgctgccaggctggagtgcagtggcacgatctggactcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccacgtagctggcactacaggcgcccaccaccacac
s panTro4.chr19                  59990822 173 +  63644993 GACCTGACCTGtc---ttttttttttttttttttttgagatggggtctcactctgctgccaggctggagtgcagtggtgcgatctcgactcactgcaacctccgcctcccaggttcaagtgattctcctgccttagcctcccacgtagctgggactacaggcgcccgccactacac
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946031 172 +  60714840 GACCTGACCTGtc----tttttttgtttgtttgtttgagatggggtctcactctgctgccaggctggagtgcagtggcgcgatctcgactcactgcaacttccgcctcccaggttcaagtgattctcctgccttagcctcccatgtagctgggactataggcgcatgccaccacac
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414290 169 - 106955855 GA-CTGACCTGtc------tttttttttctttttttgagatggggtctcactctgctgccaggctggaatgcagtggcgcaatctcgactcactgcaacctccgcctcctaggttcaagtgattctcctgccttggcctcccacgtagctgggactacaggcgcacgccaccacac
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60723973 158 +  64156825 GACCTGtct--tc--------------ttttttttcgagatggggtctcg--ctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccacgtagctgggactacaggcacccgccaccacac
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55881550 154 +  59248254 GACCTGtct--tc--------------ttttttttcgagatggggtctcg--ctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccacgtagctgggactacag----ccgccaccacac
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969824 157 +  51301725 gacctgtct--tc---------------tttttttcgagatggggtcacg--ctgttgccaggctggagtgcagtggcgcgatctgagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctctcacgtagctgggactacaggcacccgccaccacac
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670006 166 +  50890351 GACCTGtct--tc------ttctttttttttttttcgagatggggtctca--ctgttgccaggctggagtgcagtggcacgatctcagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccacgtagctgggactacagtcacccgccaccacac
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20152127  57 - 122678785 ----------------------------------------------------------ccaggtctgTGGGCGGAGG--------------------------GGCTCCCAAT----------------------------------ACTGGAACCACACAC-TCTACCACCACCC
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     78662   0 +    138250 C

a score=14525.000000
s hg38.chr19_GL949751v2_alt        996112 6 +   1002683 ccagct
s panTro4.chr19                  59990995 6 +  63644993 ccagct
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946203 6 +  60714840 ccagct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414459 6 - 106955855 ccagct
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724131 6 +  64156825 ccagct
i rheMac3.chr19                 C 0 M 372
s macFas5.chr19                  55881704 6 +  59248254 ccagct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969981 6 +  51301725 ccagct
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670172 6 +  50890351 ctggct
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20152184 0 - 122678785 C
e calJac3.chr22_GL285922_random     78662 0 +    138250 C

a score=94119.000000
s hg38.chr19_GL949751v2_alt        996118 56 +   1002683 aa--tttttgtatttttagtagagacagggtttcaccatgttggccaagatggtctca
s panTro4.chr19                  59991001 56 +  63644993 aa--tttttgtatttttagtagagacagggtttcaccatgttggccaagatggtctca
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946209 56 +  60714840 aa--tttttgtatttttagtagagacagggtttcaccatgttggccaagatggtcttg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414465 56 - 106955855 aa--cttttgtatttctagtagagacagggtttcaccacgttggccaagatggtctcg
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55881710 58 +  59248254 aatttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47969987 56 +  51301725 aa--tttttgtattgttagtagagatggggtttcaccatgttggccaggctggtctcg
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670178 56 +  50890351 aa--tctttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcg
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20152184  0 - 122678785 C
e calJac3.chr22_GL285922_random     78662  0 +    138250 C
e rheMac3.chr19                  60724137 372 +  64156825 M

a score=13244.000000
s hg38.chr19_GL949751v2_alt        996174 5 +   1002683 atctc
s panTro4.chr19                  59991057 5 +  63644993 atctc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946265 5 +  60714840 atctc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414521 5 - 106955855 atctc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724510 5 +  64156825 atctc
i rheMac3.chr19                 M 372 C 0
s macFas5.chr19                  55881768 5 +  59248254 atctc
i macFas5.chr19                 C 0 I 386
s papAnu2.chr19                  47970043 5 +  51301725 atctc
i papAnu2.chr19                 C 0 I 312
s chlSab2.chr6                   47670234 5 +  50890351 atctc
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20152184 0 - 122678785 C
e calJac3.chr22_GL285922_random     78662 0 +    138250 C

a score=79264.000000
s hg38.chr19_GL949751v2_alt        996179 34 +   1002683 ttgactttgtgatccgcccacctctgcctcccaa
s panTro4.chr19                  59991062 34 +  63644993 ttgactttgtgatccgcccacctctgcctcccaa
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946270 34 +  60714840 ttgactttgtgatccgcccacctttgcctcccaa
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414526 34 - 106955855 ctgacctcgtgatccgcctgcctctgcctcccaa
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724515 34 +  64156825 ttgactttgtgatccgcccgtctcggcctcccaa
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55882159 34 +  59248254 ttgactttgtgatccgcccatctctgcctcccga
i macFas5.chr19                 I 386 C 0
s papAnu2.chr19                  47970360 34 +  51301725 ttgactttgtgatccgcccatctctgcctcccga
i papAnu2.chr19                 I 312 C 0
s chlSab2.chr6                   47670239 34 +  50890351 ttgactttgtgatccacccatctctgcctcccga
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20152184  0 - 122678785 C
e calJac3.chr22_GL285922_random     78662  0 +    138250 C

a score=94391.000000
s hg38.chr19_GL949751v2_alt        996213 38 +   1002683 agtgctgggattacaggcgtgagccaccgcgcccagcc
s panTro4.chr19                  59991096 38 +  63644993 agtgctgggattacaggcgtgagccaccgcgcccagcc
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946304 38 +  60714840 agtgctgggattacaggcgtgagccaccacgcccagcc
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414560 38 - 106955855 agtgctgggattacaggcgtgagccaccgcgcccggcc
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724549 38 +  64156825 agtgctgggattacaggcgtaagctaccgcgtccggcc
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55882193 38 +  59248254 agtgctgggattacaggcgtgagctaccgcgtccggcc
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47970394 38 +  51301725 agtgctgggattacaggcgtgagctaccgcgcccggcc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670273 38 +  50890351 agtgctgggattacaggcgtgagctaccgcgcctggcc
i chlSab2.chr6                  C 0 C 0
s canFam3.chr1                   20152184 22 - 122678785 GGTACCAGAGTTACCTGTGTGA----------------
i canFam3.chr1                  C 0 C 0
e calJac3.chr22_GL285922_random     78662  0 +    138250 C

a score=3276.000000
s hg38.chr19_GL949751v2_alt        996251 1 +   1002683 T
s panTro4.chr19                  59991134 1 +  63644993 T
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946342 1 +  60714840 T
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414598 1 - 106955855 T
i nomLeu3.chr10                 C 0 I 134
s rheMac3.chr19                  60724587 1 +  64156825 T
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55882231 1 +  59248254 T
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47970432 1 +  51301725 t
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670311 1 +  50890351 T
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     78662 1 +    138250 T
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20152206 0 - 122678785 C

a score=857482.000000
s hg38.chr19_GL949751v2_alt        996252 285 +   1002683 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTCaataataataataataataataataataataataataataaCCCTTCCATCGCTCCCCATTACCTTCGTCATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCCACAGGATCTGCCCCCAGTCCCACAGTCTCTCTCATTCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCAAAGCCAAGCGCCAAGTCTATCTATGGTGAGC-GGGGGG--CAAGGGAGCCCCAGGCCCATAGAActgggtct
s panTro4.chr19                  59991135 273 +  63644993 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTC------------aataataataataataataataataataaCCCTTCCATCGCTCCCCATTACCTTCGTAATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCCACAGGATCTGCCCCCAATCCCACAGTCTCTCTCATTCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCGAAGCCAAGCGCCAAGTCTATCTATGGTGAGC-GGGGGG--CAAGGGAGCCCCAGGCCCATAGAACTGCGTCT
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946343 262 +  60714840 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTC---------------------AATAATAACAATAATAATAACCCTTCCATCGCTCCCCATTACCTTTGTAATG-ATCCCTTGCTGCCCTGCTTGGCATT-----TCCATAGGATCTGCCCCCAATTCCACAGTCTCTCTCATTCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCGAAGCCAAGCGCCAAGTCTATCTATGGTGAGT--GGGGT--CAAGGGAGCCCCAGGCCCATAGAACTGGGTCT
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414733 260 - 106955855 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTC------------------------AATAATAACAATAATAACCATTCCATCGCTCCCCGTTACCTTCGTAATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCCACAGGATCTGCCCCCAATTCCACAGTCTCTCTCATTCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCGAAGCCAAGCGCCAAGTCTATCTATGGTGAGT--GGGGG--CAAGGGAGCCCCAGGCCCATAGAActgggtct
i nomLeu3.chr10                 I 134 C 0
s rheMac3.chr19                  60724588 270 +  64156825 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTC---------------aataatagtaaaaataataataataaCCCTTCCATGGCTCCCCATTACCTTCATAATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCCACAGGGTCCGCCCCCAATTCCACAGTCTCACTCATCCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCAAAGCCAAGTGCCAAGTCTATCTATGGTGAGT-AGGAGG--CAAGGGAGCCCCAGGCCCATAGAACTGGGTCT
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55882232 270 +  59248254 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTC---------------aataatagtaaaaataataataataaCCCTTCCATGGCTCCCCATTACCTTCATAATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCTGCAGGGTCCGCCCCCAATTCCACAGTCTCACTCATCCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCAAAGCCAAGTGCCAAGTCTATCTATGGTGAGT-AGGAGG--CAAGGGAGCCCCAGGCCCATAGAActgggtct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47970433 270 +  51301725 acctgtCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCtc---------------aataatagtaaaaataataataataacccttCCATAGCTCCCCATTACCTTCATAATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCCGCAGGATCCGCCCCCAATTCCACAGTCTCACTCATCCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCAAAGCCAAGTGCCAAGTCTATCTATGGTGAGT-AGGAGG--CAAGGGAGCCCCAGGCCCATAGAACTGGGTCT
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670312 270 +  50890351 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTCTCCTGCTC---------------aataatagtaaaaataataataataaCCCTTCCATGGCTCTCCATTACCTTCATAATGAAGCCCTTGCTGCCCTGCTTGGCATT-----TCCGCAGGATCCGTCCCCAATTCCACGGTCTCACTCATCCCTCTTTTCTTCACCAGCCCAGAAGCTGCCCCAAAGCCAAGCGCCAAGTCTATCTATGGTGAGT-GGGGGG--CAAGGGAGCCCCAGGCCCATAGAActgggtct
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     78663 247 +    138250 ACCTGTCTTCTTAAAGTCCAGCTCTGGCTCTGAGCTC---------------------------------AAAATAATAATAA----CCTTCCATGGCTCTGCATTGCCCTTGTAATGAAGCCCTGGCT-CCCTGCTTGGCATT-----TCTGCAGAATCTG-CCCCAATTCCACAGTCTCTCTCACCCCTCTTTTCTTCACCAGCCCAGAACCTGCCCCGAAGCCAAGCGCCAAGTCTATCTATGGTGAGT-GGGGGGGAGAAGAGAATCCCAGGCCT-CAGAACTGGGTCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20152206 235 - 122678785 -------------AAATCCAGCTCTGGACCGGCCCTCCTCTGCTC-------------------------AGAA-------------CCCTCCATGGTTCCCCACTGCCCTTACGATGAAGTCTTTGCTGCTCTGCTTGGCACTCAAGATCCCCATGATCT--CCCAATTCCCAAGGTCTCTTTCATTCTTTTTTCCTTATCCAGCCCAGAGGCTGCCCCCAAACCAAGTGCCAAGTCAATCTATGGTGAGTTTCAGAG--CAAGAGAACTCCAGGC---TGAAACTGGGTCT
i canFam3.chr1                  C 0 C 0

a score=45991.000000
s hg38.chr19_GL949751v2_alt        996537 17 +   1002683 aaagaaacaggacctgg
s panTro4.chr19                  59991408 17 +  63644993 AAAGAAACAggacctgg
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946605 17 +  60714840 AAAGAAACAGGACCTGG
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103414993 17 - 106955855 aaagaaacaggacctgg
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724858 17 +  64156825 AAAGAAACAGGACCTGG
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55882502 17 +  59248254 aaagaaacaggacctgg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47970703  9 +  51301725 AAAGAAACA--------
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670582 17 +  50890351 aaagaaacaggacctgg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     78910 17 +    138250 AAAGAAACAggatctgg
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C

a score=36543.000000
s hg38.chr19_GL949751v2_alt        996554 20 +   1002683 catccagggtcttggaggag
s panTro4.chr19                  59991425 20 +  63644993 catccagggtcttggaggag
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946622 20 +  60714840 CATccagggtcttggaggag
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103415010 20 - 106955855 catccagcgtcttggaggag
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724875 20 +  64156825 AATccagggtcttggaggag
i rheMac3.chr19                 C 0 C 0
s macFas5.chr19                  55882519 20 +  59248254 aatccagggtcttggaggag
i macFas5.chr19                 C 0 C 0
s chlSab2.chr6                   47670599 20 +  50890351 aatccagggtcttggaggag
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C
e calJac3.chr22_GL285922_random     78927  0 +    138250 C
e papAnu2.chr19                  47970712  0 +  51301725 C

a score=4159.000000
s hg38.chr19_GL949751v2_alt        996574 8 +   1002683 gaggggct
s panTro4.chr19                  59991445 8 +  63644993 gaggggct
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60724895 8 +  64156825 gagaggct
i rheMac3.chr19                 C 0 C 0
s chlSab2.chr6                   47670619 8 +  50890351 gagaggct
i chlSab2.chr6                  C 0 C 0
e canFam3.chr1                   20152441 0 - 122678785 C
e ponAbe2.chr19                  56946642 0 +  60714840 C
e calJac3.chr22_GL285922_random     78927 0 +    138250 C
e nomLeu3.chr10                 103415030 0 - 106955855 C
e papAnu2.chr19                  47970712 0 +  51301725 C
e macFas5.chr19                  55882539 0 +  59248254 C

a score=4201.000000
s hg38.chr19_GL949751v2_alt        996582 17 +   1002683 gggggtctggactcctg
s panTro4.chr19                  59991453 17 +  63644993 gggggtctggactcctg
i panTro4.chr19                 C 0 C 0
s rheMac3.chr19                  60724903 15 +  64156825 --gggcctggactcctg
i rheMac3.chr19                 C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C
e ponAbe2.chr19                  56946642  0 +  60714840 C
e calJac3.chr22_GL285922_random     78927  0 +    138250 C
e nomLeu3.chr10                 103415030  0 - 106955855 C
e chlSab2.chr6                   47670627  0 +  50890351 C
e papAnu2.chr19                  47970712  0 +  51301725 C
e macFas5.chr19                  55882539  0 +  59248254 C

a score=1628.000000
s hg38.chr19_GL949751v2_alt        996599 17 +   1002683 agtcagagggaagaggt
s panTro4.chr19                  59991470 17 +  63644993 agtcagagggaagaggt
i panTro4.chr19                 C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C
e ponAbe2.chr19                  56946642  0 +  60714840 C
e calJac3.chr22_GL285922_random     78927  0 +    138250 C
e nomLeu3.chr10                 103415030  0 - 106955855 C
e chlSab2.chr6                   47670627  0 +  50890351 C
e papAnu2.chr19                  47970712  0 +  51301725 C
e macFas5.chr19                  55882539  0 +  59248254 C
e rheMac3.chr19                  60724918  0 +  64156825 C

a score=8355.000000
s hg38.chr19_GL949751v2_alt        996616 198 +   1002683 gctgggggtctggactcctgggtcagagggaagaggggctggggggctggactcctaggtttgagggaggaggggctgggggcctggactcctgagtcagagggaagaggtgctgggggc-ctggactcctgggtcagagggaagaggggctggggg-gctggactcctgggtcagagggaagaggggctggggggctgg
s papAnu2.chr19                  47970712 157 +  51301725 -----GGACCTGGAATCCAGGGTC------------------------------------ttggaggaggagaggctggg--ccTGGACTCCTGAGTCTGAAGGAGGAgggcctgggggctctggactcctgggtctgaggaaggtggggctgggggctctggactcctgggtctgaggaaggtggggctgggggcctgg
i papAnu2.chr19                 C 0 C 0
e canFam3.chr1                   20152441   0 - 122678785 C
e ponAbe2.chr19                  56946642   0 +  60714840 C
e calJac3.chr22_GL285922_random     78927   0 +    138250 C
e nomLeu3.chr10                 103415030   0 - 106955855 C
e chlSab2.chr6                   47670627   0 +  50890351 C
e macFas5.chr19                  55882539   0 +  59248254 C
e rheMac3.chr19                  60724918   0 +  64156825 C
e panTro4.chr19                  59991487   0 +  63644993 C

a score=42736.000000
s hg38.chr19_GL949751v2_alt        996814 204 +   1002683 actcctgggtcagagggaagaggggctggggggctggactcctgggtcagagggaagaggggctggggggctggactcctgggtcagagggaagaggggctggggg-gctggactcctgggtcagagggaagaggggctgggggtctggactcctgagtcagagggaagaggggctggggggctggactcctgggtcagagggaa
s papAnu2.chr19                  47970869 205 +  51301725 actcctgggtctgaaggaggagggcctggggtcctggactcctgggtctgagggaggaggggctggggtcctggactcctgggtctgaggaaggtggggctgggggctctggactcctgggtctgaggaaggtggggctgggggcctggactcctgggtctgaaggaggagggcctgggggcctggactcctgggtctgagggag
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     78927 200 +    138250 actcctgggtctgagggaggaggggctggga--ctagactcctgggtctgagggaagaggggctgtggacctagagtcctgggtctgagggaggaggggctgggg--tctggactcctgggtctgagggaagaggggct-ggggtctggactcctgggtctgagggaggagggactgtggacctagagtcctgggtctgagggag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20152441   0 - 122678785 C
e ponAbe2.chr19                  56946642   0 +  60714840 C
e nomLeu3.chr10                 103415030   0 - 106955855 C
e chlSab2.chr6                   47670627   0 +  50890351 C
e macFas5.chr19                  55882539   0 +  59248254 C
e rheMac3.chr19                  60724918   0 +  64156825 C
e panTro4.chr19                  59991487   0 +  63644993 C

a score=14907.000000
s hg38.chr19_GL949751v2_alt        997018 37 +   1002683 gaggggctgggggcctggactcctgggtcagagggaa
s macFas5.chr19                  55882539 35 +  59248254 gagaggct--gggcctggactcctgggtctgaaggag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971074 36 +  51301725 gagggact-ggggtctggactcctgagtctaagggag
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     79127 36 +    138250 gaggggct-ggggtctggactcctgggtctgagggaa
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C
e ponAbe2.chr19                  56946642  0 +  60714840 C
e nomLeu3.chr10                 103415030  0 - 106955855 C
e chlSab2.chr6                   47670627  0 +  50890351 C
e rheMac3.chr19                  60724918  0 +  64156825 C
e panTro4.chr19                  59991487  0 +  63644993 C

a score=29122.000000
s hg38.chr19_GL949751v2_alt        997055 37 +   1002683 gaggggctgggggc-ctggactcctgggtcagagggaa
s nomLeu3.chr10                 103415030 37 - 106955855 gaggggctgggggc-ctggactcctgggtctgagggag
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55882574 38 +  59248254 gagggcctgggggctctggactcctgggtctgagggag
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971110 37 +  51301725 gaggggctggggac-ctggactcctgggtctgagggag
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     79163 36 +    138250 gaggggctggggt--ctggactcctgggtctgagggag
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C
e ponAbe2.chr19                  56946642  0 +  60714840 C
e chlSab2.chr6                   47670627  0 +  50890351 C
e rheMac3.chr19                  60724918  0 +  64156825 C
e panTro4.chr19                  59991487  0 +  63644993 C

a score=55374.000000
s hg38.chr19_GL949751v2_alt        997092 67 +   1002683 gag---gggctgggggtctggactcctgggtcagagggaggaggggctgggggg-ctggactcctgggtca
s ponAbe2.chr19                  56946642 66 +  60714840 gag---gggctgggg-cctggactcctgggtccgagggaggaggggctgggggc-ctggactcctgggtct
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103415067 45 - 106955855 gag---gggctgggg----------------------gaggaagggctgggggc-ctggactcccgagtca
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55882612 70 +  59248254 gaggaagagctgaaggtctagactcctgggtctgaggaaggtggggctgggggc-ctggactcctgggtct
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971147 66 +  51301725 gag---gggttgagg--ctggactcctgggtctgaggaaggtggggctgggggctctggactcctgggtct
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     79199 66 +    138250 gag---gggctggggacctagagtcctgggtctgagggaagaggggctggggt--ctggactcctgggtct
i calJac3.chr22_GL285922_random C 0 C 0
e canFam3.chr1                   20152441  0 - 122678785 C
e chlSab2.chr6                   47670627  0 +  50890351 C
e rheMac3.chr19                  60724918  0 +  64156825 C
e panTro4.chr19                  59991487  0 +  63644993 C

a score=19963.000000
s hg38.chr19_GL949751v2_alt        997159 17 +   1002683 gagggaagaggggctgg-
s ponAbe2.chr19                  56946708 17 +  60714840 gagggaggaggggctgg-
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103415112 17 - 106955855 gagggaagaggtgctgg-
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55882682 17 +  59248254 gaaggaggagggtctgg-
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971213 16 +  51301725 gagggaggggggact-g-
i papAnu2.chr19                 C 0 C 0
s calJac3.chr22_GL285922_random     79265 17 +    138250 gagggaggaggggctgg-
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20152441 18 - 122678785 GAGGGAGGAGGGGGCTGA
i canFam3.chr1                  C 0 C 0
e chlSab2.chr6                   47670627  0 +  50890351 C
e rheMac3.chr19                  60724918  0 +  64156825 C
e panTro4.chr19                  59991487  0 +  63644993 C

a score=69560.000000
s hg38.chr19_GL949751v2_alt        997176 32 +   1002683 gggcctggactcctgggtttgagggaggagg---g
s ponAbe2.chr19                  56946725 35 +  60714840 gggcctggactcctgggtctgagggaggaggaagg
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103415129 32 - 106955855 gggtctggactcctgggtcagagggaagagg---g
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55882699 32 +  59248254 gggcctggactcctgggtctgaaggaggagg---g
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971229 32 +  51301725 gggtctggactcctgggtctgagggaggagg---g
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670627 32 +  50890351 gggcctggactcctgggtctgagggaggagg---g
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     79282 32 +    138250 gaacctggacttttgggtctgagggaggagg---g
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20152459 32 - 122678785 GGGCCTGCACCCCAGGGTCTGAGAGAGGAGG---G
i canFam3.chr1                  C 0 C 0
e rheMac3.chr19                  60724918  0 +  64156825 C
e panTro4.chr19                  59991487  0 +  63644993 C

a score=117133.000000
s hg38.chr19_GL949751v2_alt        997208 57 +   1002683 gctgggggc-ctggactcctgggtcagagggaagag---gggctggg---------------gg-gctggactccta
s panTro4.chr19                  59991487 57 +  63644993 gctgggcgg-ctggacttctgggtcagagggaagag---gggctggg---------------gg-gctggactccta
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946760 57 +  60714840 gctggaggt-ctggactcctgggtcagagggaagag---gggctggg---------------gg-gctggactccta
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103415161 57 - 106955855 gctgggggt-ctggactcctgggtcagagggaagag---gggcgggg---------------gg-gctggactccta
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55882731 59 +  59248254 cctgggggctctggactcctgggtctgaggaaggtg---gggctggg---------------ggctctggactcctg
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971261 56 +  51301725 gttgagg---ctggactcctgggtctgaggaaggtg---gggctggg---------------ggtTCTGGACTCCtt
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670659 60 +  50890351 gctgggggc-ctggactcctgggcctgagggaggaggaagagctgaa---------------gg-tctagactcctg
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     79314 57 +    138250 gctgcgtac-ctagagtcctgggtctgagggaggag---gggctggg---------------ag-cctggactcttg
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20152491 71 - 122678785 -CTGGGGGC-CTGGACTCTTGGGTCTGAGAGGGGAG---GTCCCAGGACAAGGGGGAACCATGG-TCCGGATTCCTA
i canFam3.chr1                  C 0 C 0
e rheMac3.chr19                  60724918  0 +  64156825 C

a score=7933741.000000
s hg38.chr19_GL949751v2_alt        997265 2366 +   1002683 ggtttgagggaggaggggctgggg-gcctggactcctggg-tctgatggagga-ggggctgg---gcctggactcccaggCTCATTCTCTTTCTCCCCTGGCAGAGCAGAGGAAGCGTTACTCCACAGTTGTTATGGCTGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGGTCTGTGTTCCCCCAGGACATCTTCTGGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTTGAAAGCAGCTAGGCCCCCAAGCAGGAAGCATGT-GGAAAGTCAGTTTGCCCATCCATAAAATGGACCTCCGTTGCCTCACCTCAGTCATGGATATGAAGCCAGGGGCCTCGGGTCCACT-TAATCTGCCAGCCTTTCCTCCAGGCCAGCTGTTGTGCTGGACAGTGGGACCACGGAGGCAAATCAAGACACAGCCCTGCATGAGGAAGGGGTAGACAAGGTCCAGAGGAATCCACAGAGGCGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCATGGCAGGAGACCCGAGGAGGCATTTAGAAGGAGAGAGCTataatccagactccttccctgcccgcaaggagcctccagtc-tg-tgagaagccagactcaggtgctagtcactctgatgaaagggaaacaaagggcactggg---------aggaggagctg-------atttgtggaacaggtgatcaaggaaggcttcctggaggaggtgtggttagtctcaggctgaaagtctgattaTTCTGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTTTCTCCATGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCATACCGTGGAGGATGCCTCCAGGAAGTTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCGGGGGGCACGTGGgtgggaggagtgtct--------------ggggcaggga---------cttcagggggtctgggtgtgaatcttggctcctgcacgtccttcctctgggaactctggcgagggaccccagcccccttcttgagccttaatagcctcatctattaaacagggctgttatccctaaccccctaaccgcctgaggttgcc---------ctgaCCTGCTGGCCCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCCGCCATCCCACCCGGCAGGAGGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTCGGGGTGAGCaga-------tgggctggctctgggggtggagctggaactgggcgga-gcctggagccggggcggaaatgggtggggcctctagg---tggggcggggcctggggctAAGGCGGGATCAGAGCAAGGAAGGGCAGGGGACCTGGGAAGGAAGTTCTGGAAGGCAGTGGGGTTT---GAGATTGGACCCAG---GGTCAAGATAGAACATGAAGGTGGGA-----------------------------TGAGGACATGAACAGAACATGGCCAAGAAGGATCTGGGGGAGCAGCCAGGACGAGG-------------TGGGGGCGAGGAACCACCCGGACTGGGTCTCCATGGGCGGGGTCGTGGCTTAGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTTCGGGGCGTGGACGTGCGTGGG-TTCACAGGTGTGAACGGTAGCCGCACGTGGGCTGGGACTGAGCTGAAAAATCGGCCAGGGGCGAGGCCC-GGGTAGGAAGTGGGTGCGGCGTGGGGAGGCGTGGCCTGACGGTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AGGGAAGAAG------TTGGCAGGGTCTCTGGGAAGCCGGTTTCCCCTCCTTGTGCCT-------------------CAGTCT-----------------------ACAA-CACCAGCCTGGAACAGAACAAGAGTTTTGCATGGAGTCAAGCACACCCTAG-TCGAGTCTTGTCTGTACCTCCCAGACGAGCTGACCCCTTCTCCAGAACTC-TGCTTCTT--------TTCTCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTATC-------------------------CCTCCGTATAT---CGGATTTCTCCCTACCTCGTTGAACTTGTTCACTCCCTTTGAGCCTTTTGAGCCT--GTGTGTCTCGTTCTGCGCCCTGGATTTCCCCCTCCCTGGACCCCTCAGTGGACCCAGTCTTGGTGTCCCCGTCGCCCTCCGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
s panTro4.chr19                  59991544 2391 +  63644993 ggtctgagggaggaggggctgggg-gcctggactcctggg-tctgatggagga-ggggctgg---gcctggactCCCAGGCTCATTCTCTTTCTCCCCTGGCAGAGCAGAGGAAGCGTTACTCCACAGTTGTTATGGCTGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGGTCTGTGTTCCCCCAGGACATCTTCTGGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTTGAAAGCAGCTGGGCCCCCAAGCAGGAAGCATGT-GGAAAGTCAGTTTGCCCATCCATAAAATGGACCTCCATTGCCTCACCTCAGTCACGGATATGAAGTCAGGGGCCTCGGGTGCACT-AAATCTGCCAGCCTTTCCTCCGGGCCAGCTGTTGTGCTGGACAGTGGGACCACGGAGACAAATCAAGACACAGCCCTGCATGAGGAAGGGGTAGACAAGGTCCAGAGGAATCCACAGAGGCGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCACAGCGGGAGACCCGAGGAGGCATTTAGAAGGAGAGAGCTataatccagactccttccctgcccgcaaggagcctccagtc-tg-tgagaagccagactcaggtgctagtcactctgatgaaagggaaacaaagggcactggg---------aggaggagctg-------atttgtggaacaggtgatcaaggaaggcttcctggaggaggggtggttagtctcaggctgaaagtctgattaTTCTGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTTTCTCCATGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCATACCGTGGAGGATGCCTCCAGGAAGTTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGGGGGCACGTGGgtgggaggagtgtct--------------ggggcaggga---------cttcagggggtctgggtgtgaatcttggctcctgcacgtccttcctctgggaactctggcgagggaccccagcccccttcttgagccttaatagcctcatctattaaacagggctgttatccctaaccccctaaccgcctgaggttgcc---------ctgaCCTGCTGGCCCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCCGCCATCCCACCCGGCAGGAGGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTCGGGGTGAGCGGA-------Tgggctggctctgggggtggagctggaactgggcgga-gcctggagccggggcggaaatgggtggggcctctagg---tggggcggggcctggggctaaggcgggATCAGAGCAAGGAAGGGCAGGGGACCTGGGAAGGAAGTTCTGGAAGGCAGTGGGGTTT---GAGATTGGACCCAG---GGTCAAGATAGAACATGAAGGTGGGA-----------------------------TGAGGACATGAACAGAACATGGCCAAGAAGGGTCTGGGGGAGCAGCCAGGACGAGG-------------TGGGGGCGAGGAACCACCCGGACTGGGTCTCCATGGGCGGGGTCGTGGCTTAGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTTCGGGGCATGGACGTGCGTGGG-TTCACAGGCGTGAACGGTAGCCGCACGTGGGCTGGGACTGAGCTGAAAAATCGGCCAGGGGCGAGGCCC-GGGTAGGAAGTGGGTGCGGCGTGGGGAGGCGTGGCCTGACGGTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAACGCAGGGCGGCGGCGCTCAGGTGAG-----------------AGGCAAGAAG------TTGGCAGGGTCTCTGGGAAGCCGGTTTCCCCTCCTCGTGCCT-------------------CAGTCT-----------------------ACAA-CACCAGCCTGGAACAGAACAAGAGTTTTGCATGGAGTCAAGCACACCCTAG-TCGAGTCTTGTCTGTACCTCCCAGACGAGCTGACCCCTTCTCCAGAACTC-TGCTTCTT--------TTCTCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTATCCCTCCCTATATCGGATTTCTCCCTACCTCCCTATAT---CGGATTTCTCCCTACCTCGTTGAACTTGTTCATTCCCTTTGAGCCTTTTGAGCCT--GTGTGTCTCGTTCTGCGCCCTGGATTTCCCCCTCCCTGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCCGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56946817 2347 +  60714840 tgtctgagggagaaggggctgggg-gcctggactcctgagttctgatggaggagggggctgg---gcctggactCCCAGGCTCATTCTCTTTCTCCCCTCGCAGAGCAGAGGAAGCGTTACTCCACAGTTGTTATGGCTGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGATCTGTGTTCCCCCAGGACATCTTCTGGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTTGAAAGCAGCTGGGCCCCCAAGCAGGAAGCATGT-GGAAAGTCAGTTTGCCCATCCATAAAATGGACCTCCGTTGCCTCACCTCAGTCATGGATATGAAGTCAGGGGCCTCGGGTCCTCTCAAATCTGCCAGCCTTTCCTCCCGGCCAGCTGTTGTGCTGGACAGTGGGACCATGGAGACAAATCAAGACACAGCCCTGCATGAGGAGGGGGTAGACAAGGTCCAGAGGAACACACGGAGGTGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCACAGCGGGAGACCCGAGGAGGCATTTAGAAGGAGAGAGCTataatccagactccttccctgccggcaaggagcctccagta-tg-tgagaagccagactcaggtgctagtcactctgatgaaagggaaacagagggcactggg---------aggaggagctg-------atttgtggaacaggtgatcaaggaaggcttcctggaggaggtgtggttagtctcaggctgaaagtctgattaTTCCGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTTTCTCCGTGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCACACCGTGGAGGATGCCTCCAGGAAGCTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGGGGGCACGTGGgtgggaggagtgtct--------------ggggcaggga---------cttcagggggtctgggtgtgaatcttggctcctgcacgtccttcctctggga-------------accccagcctccttcttgagccttaatagccttacctattaaacaggggtgttatccctaaccccctaaccgcatgaggttgcc---------ctgaCCTGCTGGCTCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCCGCCATCCCACCCGGCAGGAGGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCCGTGATGCCACCCGGCAGGAGCCGCTCGTTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCAGACGTGCACTTCTTCCAGGGCCTGCGCCTCGGGGTGAGCGGA-------CAggctggctctgggggtggagctggaactgggcgga-gcctggagccggggcggacatgggtggggcctctagg---tggggcggggcctgggactaaggcgggATCAGAGCAAGGAAGGGCAGGGAACCTGGGAAGGAAGTTCTGGAAGGCAGTGGGGTTT---GAGATTGGACCCAG---GGTCAAGACAGAACGTGAAGGTGGGA-----------------------------TGAGGACATGGACAGAACATGGCCAAGAAGGGTCTCGGGGAGCAGCCAGGACGAGGA------------TGGGGGCGAGGAACCACCCGGACTGGGTCTCCATGGGCGGGGTCGTGGCTTAGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTCCAGGGCGTGGACGTGCGTGGG-TTCACAGGCGTGAACGGTGGCCGCACGTGGGCTGGGACTGAGCTGAAAAATCGGCCAGGGGCGAGGCCC-GGGTAGGAAGTGGGTGC----------GGCGTGGCCTGACGGTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AGGGAAGAAG------TTGGCAGGGTCTCTGGGAAGCCGGTTTCACCTCCTTGTGCCT-------------------CAGTCT-----------------------ACAA-CACCAGCCTGGAACAGAACAAGAGTTTTGCATGGAGTCAAGCACACCCTAG-TCGAGTCTTGTCTGTACCTCCCAGACGGGCTGACGCCTTCTCCAGAACTC-TGCTTCTT--------TTCTCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTATC-------------------------CCTCCCTATAT---CGGATTTTTCCCTACCTCGTCGAACTTGTTCACTCCCTTTGAGCCTTTTGCGCCT--GTGTGTCTCGTTCTGCGCCCCGGATTTCCCCCTCCCTGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCCGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103415218 2339 - 106955855 ggtctgagggaggaggggctgggg-gcctggactcctggg-tctgatggaaga-ggggctgg---gcctggactCCCAGGCTCATTCTCTTTCTCCCCTGGCAGAGCAGAGGAAGCGTTACTCCACAGTTGTTATGGCTGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGGTCTG-----CCCCAGGACATCTTCTGGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTTGAAAGCAGCTGGGCCCCCAAGCAGGAAGCATGT-GGAAAGTCAGTTTGCCCATCCATAAAATGGACCTCCGTTGCCTCATCTCAGTCATGGATATGAAGTCAGGGGCCTCGGGTCCACTCAAATCTGCCAGCCTTTCCTCCCGGCCAGCTGTGGTGCTGGACAGTGGGACCACGGAGACAAATCAAGACAGAGCCCTGCATGAGGAGAGGGTAGACAAGGTCCAGAGGAACCCAAGGAGGCGCCTGGTGCTCTAATGGAGGTGGTAGGGGGCACAGCAGGAGACCCCAGGAGGCATTTAGAAGGAGAGAGCTataatccagactccttccctgcccacaaggagcctccagtc-tg-tgagaagccagactcaggtgctagtcactctgatggaagggaaacaaagggcactggg---------agg-ggagctg-------atttgtggaacaggtgatcaaggaaggcttcctggaggaggtgtggttagtctcaggctgaaagtctgattaTTCCGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTG-TTTCTCCGTGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGATGATGGCGTGCACACTGTGGAAGATGCCTCCAGGAAGCTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGGGGGCACATGGgtgggaggagtgtct--------------ggggcaggga---------cttcagggggtctgggtgcgaatcttggctactgcacgtccttcctctgggaactctggcgagggaccccggcccccttcttgagccttaatagcctcatctattaaacaggggtgttatcgctaaccccctaaccgcgtgaggttgcc---------ctgaCCTGCTGGCCCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCCGCCATCTCACCCCGCAGGAGGAGCTGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTGCTGTTGCTCGTGTGCCAGGAACCCGAGCGCGCCCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTCGGGGTGAGCGAA-------CGGGCTGGCTCTGGGGGTGGAGCTGGAACTGGGCGGA-GCCTGGAGCCGGGGCGGAAATGGGTGGGGCCTCTAGG---TGAGGCGGGGCCTGGGGCTAAGGCGGGACCAGAGCAAGGAAGGGCAGGGGACCTGGGAAGGAAGTTCTGGAAGGCGGCGGGGTTT---GAGATTGGACCCAG---GGTCAAGATAGAACACGAAGGTGGGA-----------------------------TGAGGACATGAACAGAACATGGCCAAGAAGGGTCTGGGGGAGCAGCCAGGACGAGGA------------TGGGGGCGAGGAACCACCCGGACTGGGTCTCCATGGGCGGGGTCGTGGCTTAGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTCCAGGGCGTGG-------------------------ACGGTGGCCGCACGTGGGCTGGGACTGAGCTGAAAAATCGGCCAGGGGTGAGGCCC-GGGTAGGAAGTGGGTGCGGCGTGGGGAGGCGTGGCCTGACGGTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATTCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AGGGAAGAAG------TTGGCGGGGTCTCTGGTTAGCCGGTTTCCCCTCCTTGTGCCT-------------------CAGTCT-----------------------ACAA-CACCAGCCTGGAACAGAACAAGAGTTTTGCATGGAGTCAAGCACACCCTAG-TCGACTCTTGTCTGTACCTCCCAGACGAGCTGACCCCTTCTCCAGAACTC-TGCTTCTT--------TCCTCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTATC-------------------------CCTCCCTATAT---CGGATTTCTTCCTACCTCGTTGAATTTGTTTACTCTCTTTGAGCCTTTTGAGCCTCAGTGTGTCTCGTTCTGCGCCCTGGATTTCCCCCTCCCTGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCCGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60724918 2367 +  64156825 ggtctgaaggaggagggcctgggggctctggactcctggg-tctgagggagga-ggggctgagg-gcctggactcccaggCTCATTTTCTTTCTCCCCTGGCAGAGCAGAGGAAGCGTTACTCCACAGTGGTTATGGCCGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGATCTATGTT-CCCCAGGACATCTTCTAGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTGGAAAGCAGCTGGGCCCCAAAGCAGGAAGCATGT-GGAAAGTCAGTTTGCCCATCTGTAAAACGGACCTCCGTTGCCTCACCTCAGTCATGGATATGAAGTCAGGGACCTCGGGTCCACTCAAATCTGCCAGCCTTTTCTCCGGGCTAGCTGTTGTGCTGGACAGTGGGACCATGGGGACAAATCAAGACACAGCCCTGCATGAGGAGGGGGTAGACAAGGTCCAGAGGAACCCATGGAGGTGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCACAGCGGGAGACCCGAGGAGGCATTTAGAAggagagagctgtaatccagactccttccctgcctgcaaggagcctccagtc-tg-tgagaagccagactcaggtgctagtcactctgatgaaagggaaacaaagagcactggg---------aggaggagctg-------atttgtggagcaggtgatcaaggaaggcttcctggaggaggtgtggttagtctcaggctgaaagtctgattaTTCTGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTGTCTCCCTGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCACACCGTGGAGGATGCCTCCAGGAAGCTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGggggcacgtgggtgggaggagtgtct--------------ggggcaggga---------cttcagggggtctgggtgtgaatcttggctcctgcatgtctttcctctgggaactctggcgagggaccccagcccccttcttgagccttaatagcctcatctattaaacaggggtgttatccctaactccctaactgcgtgaggttgcc---------ctgaCCTGCTGGCCCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCTGCCATCCCACCCGGCAGGAGGAGCTGGAGTCATACCCGCTGGGCGCCATCGTGCGTTGTGATGCGGTGATGCCACCCGGCCGGAGCCGCTCGCTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTTGGGGTGAGCGGACGGCGTTCgggttggctctgggggcggagctggaactgggcgga-gcctggagccggggcggaaatgggtggggcctctagg---tggggcggggcatagggctaaggcgggATCACAGCAAGGAAGGGCATGGGACCTGGGAAGGAAGTTCTGAAAGGGAGTGGGGTTTGAGGAGACTGGACCCAG---GGTCAAGATAGCACATGAGGGTGGGA-----------------------------TGAGGACATGAACAGAACATGGGCAAGTAGGGCCTGGGGGAGCAACCAGGACGAGGA------------TGGGGGCGAGAAACCACCTGGACTGGGTCTCCATGGGCCGGGTCGTGGTTTGGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTCCAGAGTGTGGACGTGCGTGGG-AACATAGGCGTGAACGATGTACGCACGTGGGCTGGGACGGAGCAGAAAAATCGGCCAGGGGCGTGGCCC-GGGTAGGAAGGGGGTGCGGCGTGGGGAGGCGTGGCCTGAT-GTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCCGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AAGGAAGAAG------TTGGCGGGGTCTCTGGGAAGCCGGTTTCCCCTCCCTGTGCCT-------------------CAGTCT-----------------------ACAA-CACCAGACTGGAACGGAGCA--AGTTTTGCATGGAGTCAAGCACAACCTAG-TCGAGTCTTGTCTGTACCTCCCAGACGAGATGACTC----CCCAGAACTCTTACTTCTT--------TTCCCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTACC-------------------------CCTCCCCATAT---CGGATTTCTCCCTACCTCGTTGAACTTGTTTACTCCCTTTGAGCCT-------CA--GTGTGTCTCGTTCTGCGCCCCGGATTTCCCCCTCCATGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCTGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i rheMac3.chr19                 C 0 M 697
s macFas5.chr19                  55882790 2364 +  59248254 ggtctgagggaggaggggttgagg---ctggactcctggg-tctgagggagga-ggggctgagg-gcctggactCCCAGGCTCATTTTCTTTCTCCCCTGGCAGAGCAGAGGAAGCGTTACTCCACAGTGGTTATGGCCGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGATCTATGTT-CCCCAGGACATCTTCTAGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTGGAAAGCAGCTGGGCCCCCAAGCAGGAAGCATGT-GGAAAGTCAGTTTGCCCATCTGTAAAACGGACCTCCGTTGCCTCACCTCAGTCATGGATATGAAGTCAGGGACCTCGGGTCCACTCAAATCTGCCAGCCTTTTCTCCGGGCTAGCTGTTGTGCTGGACAGTGGGACCATGGGGACAAATCAAGACACAGCCCTGCATGAGGAGGGGGTAGACAAGGTCCAGAGGAACCCACGGAGGTGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCACAGCGGGAGACCCGAGGAGGCATTTAGAAGGAGAGAGCTGTAATCcagactccttccctgcccgcaaggagcctccagtc-tg-tgagaagccagactcaggtgctagtcactctgatgaaagggaaacaaagagcactggg---------aggaggagctg-------atttgtggagcaggtgatcaaggaaggcttcctggaggaggtgtggttagtctcaggctgaaagtctgattaTTCTGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTGTCTCCCTGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCACACCGTGGAGGATGCCTCCAGGAAGCTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGggggcacgtgggtgggaggagtgtct--------------ggggcaggga---------cttcagggggtctgggtgtgaatcttggctcctgcatgtctttcctctgggaactctggcgagggaccccagcccccttcttgagccttaatagcctcatctattaaacaggggtgttatccctaactccctaactgcgtgaggttgcc---------ctgaCCTGCTGGCCCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCTGCCATCCCACCCGGCAGGAGGAGCTGGAGTCATACCCGCTGGGCGCCATCGTGCGTTGTGATGCGGTGATGCCACCCGGCCGGAGCCGCTCGCTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTTGGGGTGAGCAGACGGCGTTCGGGTTGGCTCTGGGGGCGGAGCTGGAACTGGGCGGA-GCCTGGAGCCGGGGCGGAAATGGGTGGGGCCTCTAGG---TGGGGCGGGGCATAGGGCTAAGGCGGGATCACAGCAAGGAAGGGCATGGGACCTGGGAAGGAAGTTCTGAAAGGGAGTGGGGTTTGAGGAGACTGGACCCAG---GGTCAAGATAGCACATGAGGGTGGGA-----------------------------TGAGGACATGAACAGAACATGGGCAAGTAGGGCCTGGGGGAGCAACCAGGACGAGGA------------TGGGGGCGAGAAACCACCTGGACTGGGTCTCCATGGGCCGGGTCGTGGTTTGGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTCCAGAGTGTGGACGTGCGTGGG-AACATAGGCGTGAACGATGTACGCACGTGGGCTGGGACGGAGCAGAAAAATCGGCCAGGGGCGTGGCCC-GGGTAGGAAGGGGGTGCGGCGTGGGGAGGCGTGGCCTGAT-GTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCCGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AAGGAAGAAG------TTGGCGGGGTCTCTGGGAAGCCGGTTTCCCCTCCCTGTGCCT-------------------CAGTCT-----------------------ACAA-CACCAGACTGGAACGGAGCA--AGTTTTGCATGGAGTCAAGCACAACCTAG-TCGAGTCTTGTCTGTACCTCCCAGACGAGATGACTC----CCCAGAACTCTTACTTCTT--------TTCCCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTACC-------------------------CCTCCCCATAT---CGGATTTCTCCCTACCTCGTTGAACTTGTTTACTCCCTTTGAGCCT-------CA--GTGTGTCTCGTTCTGCGCCCCGGATTTCCCCCTCCATGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCTGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47971317 2349 +  51301725 ggtctgagggaggaggggttgagg---ctggactcctggg-tctgagggagga-ggggctgggg-gcctggactcccaggctcattttctttctcccctgGCAGAGCAGAGGAAGCGTTACTCCACAGTGGTTATGGCCGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGATCTATGTT-CCCCAGGACATCTTCTAGG-GCAAAGGT-----GGCCTCAGGAGATAGGGCTTTGGAAAGCAGCTGGGCCCCCAAGCAGGAAGCATGT-GGAAAGCCAGTTTGCCCATCCGTAAAACGGACCTCCGTTGCCTCACTTCAGTCATGGATATGAAGTCAGGGACCTCGGGTCCACTCAAATCTGCCAGCCTTTTCTCCGGGCTAGCTGTTGTGCTGGACAGTGGGACCATGGGGACAAATCAAGACACAGCCCTGCATGAGGAGGGGGTAGACGAGGTCCAGAGGAACCCACGGAGGTGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCACAGCGGGAGACCCGAGGAGGCATTTAGAAGGAGAGAGCTGTAATCCAGACTCCTTCCCTGCCCGCAAGGAGCCTCCAGTC-TG-TGAGAAGCCAGACTCAGGTGCTAGTCACTCTGATGAAAGGGAAACAAAGAGCGCTGGG---------AGGAGGAGCTG-------ATTTGTGGAGCAGGtgatcaaggaaggcttcctggaggaggtgtggTTAGTCTCAGGCTGAAAG--TGATTATTCTGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTGTCTCCCTGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCACACCGTGGAGGATGCCTCCAGGAAGCTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGGGGGCACGTGGGTGGGAGGAGTGTCT--------------GGGGCAGGGA---------CTTCAGGGGGTCTGGGTGTGAATCTTGGCTCCTGCACGTCCTTCCTCTGGGAACTCTGGCGAGGGACCCCAGCCCCCTTCTTGAGCCTTAATAGCCTCATCTATTAAACAGGGGTGTTATCCCTAACCCCCTAACTGCGTGAAGTTGCC---------CTGACCTGCTGGCCCACACTCCCGTCGCCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCTGCCATCCCACCCGGCAGGAGGAGCTGGAGTCGTACCCGCTGGGCGCCATCGTGCGTTGTGATGCGGTGATGCCACCCGGCCGGAGCCGCTCGCTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTTGGGGTGAGCGGACGGCGTTCGGGTTGGCTGTgg----------------gggcgga-gcctggagcaggggcggaaatgggtggggcctctagg---tggggcggggcctagggcTAAGGCGGGATCACAGCAAGGAAGGGCATGGGACCTGGGAAGGAAGTTCTGAACGGGAGTGGGGTTTGAGGAGACTGGACCCAG---GGTCAAGATAGCACATGAGGGTGGGA-----------------------------TGAGGACATGAACAGAACATGGGCAAGTAGGGCCTGGGGGAGCAGCCAGGACGAGGA------------TGCGGGCGAGAAACCACCTGGACTGGGTCTCCATGGGCGGGGTCGTGGTTTGGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTCCAGAGTGTGGGCGTGCATGGG-TCCATAGGCGTGAACGATGGCCGCACGTGGGCTGGGACGGAGCAGAAAAATCGGCCAGGGGCGTGGCCC-GGGTAGGAAGGGGGTGCGGCGTGGGGAGGCGTGGCCTGAT-GTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AGGGAAGAAG------TTGGCGGGGTCTCTGGGAAGCCggtttcccctccctgtgcct-------------------cacTCT-----------------------ACAA-CACCAGACTGGAACAGAGCA--AGTTTTGCATGGAGTCAAGCACAACCTAG-TCGAGTCTTGTCTGTATCTCCCAGACGAGCTGACTCCTT-CCCAGAACTCTTACTTCTT--------TTCCCTGTTCCCTGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTACC-------------------------CCTCCCCATAT---CGGATTTCTCCCTACCTCGTTGAACTTGTTTACTCCCTTTGAGCCT-------CA--GTGTGTCTCGTTCTGCGCCCCGGATTTCTCCCTCCATGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCTGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47670719 2368 +  50890351 ggtctgagggaggaggggctgggg--cctggactcctggg-tctgatggagga-ggggctggggagcctggactCCCAGGCTCA-TTTCTTTCTCCCCTGGCAGAGCAGAGGAAGCGTTACTCCACAGTGGTTATGGCCGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGGTCTGTGTT-CCCCAGGACATCTTCTAGG-GCAAAGGT-----GGCCTCAGGAGACAGGGCTTTGGAAAGCAGCTGGGCCCCCAAGCAGGAAGCATGT-GGAAAGCCAGTTTGCCCATCCGTAAAACGGACCTCCGTTGCCTCACCTCAGTCATTGATATGAAGTCAGGGGCCTCGGGTCCACTCAAATCTGCCAGCCTTTTCTCCGGGCTAGCTGTTGTGCTGGACAGTGGGACCACGGGGACAAATCAAGACACAGCCCTGCATGAGGAGGGGGTAGACAAGGTCCAGAGGAACCCACGGAGGTGCCTGGTGCTCTAATGGAGGTGGCAGGGGGCACAGCGGGAGACCCGAGGAGGCATTTAGAAGGAGAGAGCTGTAATCcagactcctcccctgcccgcaaggagcctccagtc-tg-tgagaaaccagactcaggtgctagtcactctgatgaaaggaaaacaaagagcactggg---------aggaggagctg-------atttgtggagcaggtgatcaaggaaggcttcctggaggaggtgtggttagtctcaggctgaaagtctgattaTTCTGGGGG-ATTCTGAGCCCACCTGGCATCATCTTGGGCCTCACTGCTGTCTCCCTGGT-CCGTACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTGCATACCGTGGAGGATGCCTCCAGGAAGCTGGCCGTCATGGATAGCCAGGGCCGAGTCTGGGCACAGGAGATGCTGCTGCGAGTGTCTCCCGACCATGTCACGCTGCTCGACCCGGCCTCCAAGGTGCCAGGGGGCACGTGGgtgggaggagtgtct--------------ggagcaggga---------cttcagggggtctgggtgtgaatcttggctcctgcatgtccttcctctgggaactctggcgagggaccccagcccccttcttgagccttaatagcctcatctattaaacacgggtgttatccctaaccccctaactgcgtgaggttgcc---------ctgaCCTGCTGGCCCACACTCCCGTCGTCATTTAGTAGTACCATCATTTCGGGGCCTCAGTTTACCCTGCCATCCCACCCGGCAGGAGGAGCTGGAGTCGTACCCGCTGGGCGCCATCGTGCGTTGTGATGCGGTGATGCCACCCGGCCGGAGCCGCTCGCTGCTGCTGCTCGTGTGCCAGGAACCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTCGGGGTGAGCGGACGGCGTTCGGGTTGGCTCTGGGGGCGGAGCTGGAACTGGGCGGA-GCCTGGAGCCGGGGCGGAAATGGGTGGGGCCTCTAGG---TGGGGCGGGGCCTAGGGCTAAGGCGGGATCACAGCAAGGAAGGGCATGGGACCTGGGAAGGAAGTTCTGAAAGGGAGTGGGGTTTGAGGAGACTGGACCCAG---GGTCAAGATAGAACATGAGGGTTGGA-----------------------------TGAGGACATGAACAGAACATGGGCAAGTAGGGCCTAGGGGAGCAGCTAGGACGAGGA------------TGCGGGCGAGAAACCACCTGGACTGGGTCTCCATGGGCGGGGTCGTGGTTTGGGGCAGGGACAGGTGTAGGGCGAGGG-GTGAGTCCAGAGTGTGGACGTGCGTGGG-AACATAGGCGTGAACGATGGCCGCAAGTGGGCTGGGACGGAGCAGAGAAATCGGCCAGGGGCGTGGCCC-GGGTAGGAAGGGGGTGCGGCGAGGGGAGGCGTGGCCTGAT-GTGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAGGGCGGCGGCGCTCAGGTGAG-----------------AGGGAAGAAG------TTGGCGGGGTCTCTGGGAAGCCGGTTTCCCCTCCCTGTGCCT-------------------CAGTCT-----------------------ACAA-TACCAGACTGGAACGGAGCA--AGTTTTGCATGGAGTCAAGCACAACCTAG-TCGAGTCTTGTCTGTATCTCCCAGACGAGCTGACTCCTT-CCCAGAATTCTTACTTCTT--------TTCCCTGTTCCCCGTCC--AGGCCCTCAGTTTCACTCTAGAGAGGTGCTACC-------------------------CCTCCCCATAT---CGGATTTCTCCCTACCTCGTTGAACTTGTTTACTCCCTTTGAGTCT-------CA--GTGTGTCTCGTTCTACGCCCCGGATTTCCCCCTCCATGGACCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCCGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     79371 2328 +    138250 gttctgagggaggagAggctgggg-----------ttggg-gct---ggggct-ggggctgg---ggctggACTCCCAGGCTCATTCTCCTTCTCCCCCCGCAGAGCAGAGGAAGCGTTACTCCACGGTTGTTATGGCCGATGTATCCCAGTACCCAGTCAATGTGAGTCTGGGGTCTGTGTTTCCCCAGGTCATCTCT--GG-GCAAAGGT-----GCCCTCAGGAGATAGGGCTTATTAAAGCAGTTGGGCCCCCAAGCAGAAAGCATGT-GGAAAGTCAGTTTGCTCATCCACAAAATGGACCTCCATTGCCTCGCCTCAATTATAGATATGAAGTCAGGGACCCCGGGTCCACTCAAATCTGCCAGCCTTTCCTCT--GCCAGCTGTTGTGCTGGACAGTGGGACCATGG-GACAAATC-AGACACGGCCCTGCATGAGGAGGGGGTAGACAAGGTGCAGAGGAACCCACGGAGGCGCCTGGTGCTCTAATGGAGGAGGCAGG-----------------------------TAGAAGGAGCGAGCTATAATCCAGACTCCTTCCCT-----------GCCTCCAGTC-TG-GAAGAAGCCAGACCCAGGTGCTAGTCATGCTGATGAAAGGGAAGCAAAGGGCACTGGG---------AGGAGGAGCTG-------ATTTGTGGAGCAGGTGATCAAGGAAGGCTGCCT---AGAGGTGTGGTTAATTTCGGGCTGGAAGTCTGATTATTCCGGGGGAATTCTGAGCCCACCTGGCATAATCTTGGGCCTCACTGCTTTCTCCGTGGT-CCATACCAGCACCTGGTGACGTTCTGCCTGGGTGAGGAAGATGGTGTGCACACCGTGGAGGATGCCTCCAGGAAGCTGTCTGTCATGGACAGCCAGGGCCGAGTCTGGGCACAAGAGATGCTGCTGCGTGTATCCCCCGACCACGTCACGCTGCTTGACCCGGCCTCCAAGGTGCCagggggtatgagcgtgggaagagtgtct--------------agggcaggga---------cttcggtggatttgggtgtgaatcttggctcctgcacgtccttcctctaggaacaatggcgagggagcccagccccattcttgagtcttaatagcctcatctattgaacaggggtgttatctctcaccccctaaccgcgcgaggtGGCC---------CTGCCCTGCTGGCCCACACTGCCCTCACC-TTTAGTCCTATCACCAGTTCGAGGCCTCAGCTTACCCC-CCATCCCACCCGCCAGGAGGAGCTGGAGTCGTACCCGCTGGGCGCCATCGTGCGCTGCGACGCGGTGTTGCCACCCGGCCGGAGCCGCTCGCTGCTGCTGCTCGTGTGCCAGGAGCCCGAGCGCGCGCAGCCCGACGTGCACTTCTTCCAGGGCCTGCGCCTGGGGGTGAGCGCACCGGGTTCGGGCTGGCTC--GGGGTGGAGCTGAAACTGGGCGGA-GCCTGGAGCCGGGGCGGAAATGGGTGGGGTTTCCAGG---AGGGGCGGGGCCTGGGGCAAAGGCGGGGTCAGAGCAAGGAAGGGCAAGGGGCCTGGGAAG------------GGGAGTGAG-------GAGGCTGGACGTAG---AGTCAAGATAAAACATGAGGCTGGGACGTAGTGGAGGCTAAGGGCTGGAGTAGTCTGAGGACATCAACAGAACATGGACAAGAAGGGTCTGGAGGAGCAGCCAGAACGATGA------------TG-GGGCAAGGAACCACCTGGACTGGGTCTCCATGGGCGGGGTCGTGGCTTAGGGCAGGGACAGGTGTAGGGAGAGGG-GTGAGTCCAGGGCGTGGACGTGCGTGGG-TCCACAGGCAGGAACGATGGCCGCTCGTGGACTAGGAGCGAGCGGAAAACTCGGCCAGGGGCGTGGCTCGGGGTGGGAAGTGGGTGGGGCGTGGGGAGGCGTGGCCTGACGGCGTGATTGGCAGGCGGAGCTGATCCGAGAGGACATCCAGGGGGCTCTGCACAATTACCGCTCGGGCCGCGGAGAGCGCAGGGCGGCGGCGCTGAGGTGAG-----------------AGGGAAGAAG------TTGGTGGGACCTCTAGGAAGCCGGTTTCCCCTCCCTGGGCCTGTCTCATCTGAGAAGTGGGCAGACA-----------------------CCAACCACCAGCCTGGAACAGAACC--AGTGTTGAATGGAGTCAAGCACGCCCTCG-TCGAG---CGTTTGTAGCTCCCAGACGAGGTGGATCCTCTTCCAGGACGC-TCCTTCTT--------TTCCCTGTTCCCTGTCT--AGGCCCTGGGTTTCACTTTGGAGA--TGCTACT-------------------------CCTCCCTA-GT---GGGATTTCTCCCCAACTCTTTGAACCTGTTTGCTCCCTTTGTGCCT-------CA--GTGTGTCTCGTTCTGGGCCCCGAATTTCCCCCTCCCTGGATCCCTCAGTGGACCCAGCCTTGGTGTCCCCGTCGCCCTCCGCAGGGCCACGCAGGAGGAGTTGCAGCGCGACCGCTCGCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20152562 2392 - 122678785 AGTCTGAGGGAGGAGGGGCTGGGG---TCTGACTCCTGGG-TCTGAGGCAGTA-GGGGCTGA---GTCT------TCTGGATTATTCTCCTTCTCCCCC-ACAGAGCAGAGGAAACGTTATTCCACTGTGGTTATGGCAGATGTTTCGCAGTATCTAGTCAATGTGAGT-TGGGGTCTGCGTGGCCACAGGGAGTCTTGTGGGAGGAAAGGCAGGCAGGCCTGGGAAGATGGAAGTGTTGAAAGCAGTTGGGTCTCCAAGCAGAAAGAAGCTAGGAAACTGAGTTTGGTCATATGCAAGATGGGTTTC---TGCCTTTGCTCAGAAGTGGGTATTGAGTAGAAG---TCAACTCCACTTGAAT---CCAAGTTTTCCTCCAGACCAGCTCTTGTGCTGGACAGTCAGGCCATGGGGACAA--TGTTACATATCCTCGTACGAGTACAGGTCAAA----------------------GGgtgccaggtgctctaatggaggcag--------------------------aggtgcttagaagggactagatataaccaa-----------tgccttcaaggagcctccagtcgtgctgggaggacaggtcccagtgctagtcactccgatgaaagcaaaacaaaggaaactcaggggccccataggtggagcaggtgccccataagtggagcaggtgat-aaggaaggctttcccaaggaggtgtgtttagtctcgggctggaaggctg---aTGCCAGGGG-ATGCTGAGCCCAGCTGACATTAATCTGGGACTCACTGCTTTCTCGGCACCGCCGTGCCAGCACCTGGTGACATTCTGCCTGGGTGAAGAGGATGGCGTGCACACTGTGGAGGATGCCTCCCGGAAGCTGGCCGTCATGGACAATCAGGGCCGCGTCTGGGCCCAAGAGATGCTGCTGCGCGTGTCTCCGGACCACGTCACGCTGCTTGACCCCATCTCCAAGGTGCCAGGGGACACGTGGGTGGAAAGCGCAGTTGGCCTGAGCGAGCAGGGGCATGGAGAGCTTGACCCtccggacgtctaagtgtgaatattggcctctgcatgtccttcctttgggaactttggcaagagatctccacccccattttgagtattattagtctcccctattaaacaggggtgttatccttaaccccctaacctcgcagggttgcctgtgCAGTGCCAGCGTACAAGCTGTCACTGCTGTCACCATTT--TAGTACCACTGGTTCCAGGCCTCAGTTTACCC-GCCATCCCACCCTGCAGGAGGAGTTGGAGTCGTACCCGCTGGGGGCCATCGTGCGCTGCGACGTGGTGATGCTGCCAGGCCGGAGCCGCTCGCTGCTGCTGCTCGTGTGCCAGGAGCCTGAGCGCACGCAGCCGGATGTGCACTTCTTCCAGGGCTTGCGTCTGGGGGTGAGCGGGCCTGGTCAGGGGAGCCACCGGGGACAGGGCTGAGACCCTGTGGGTTCCCGGAGCGAAGCTAGAGCTAGGCGGGGCCTCTGGGGATGGGGGCGGGGCCTGGGGCAGAGGCGGG-TCTGGTCACCGGAGGAGGCGGGGCCTGGAGAG-AAGTTCGGGAAGGGAAAGGGGTTTT--GAGGTCAGGACTGACCTGGTGGAGGGCGAGACTAAGGTCCCGG-----------------------------GCGGGACGT-AACAGCACATGGGGCAG-AGGGTCT--GGGAGCAGCCACAACCAGAGGCGAGTATGGTCTAGGGGCAAGGCCACATCAGGACCCGGCCTC--TGGGCATGGTCGAGGCCCAGGGCAGGGGCAGAAGTAGGGTGAGGGTGTGAGTTCAGAGAGTGGCGGTGCATGGGCACCGTGAGCCTGAGCGCTGGCTGGAGGGGTTCTGGCGCCCAGCCCAGAAATCGATCCTTGGGGGGACCG-TGGCCAGAGGTAGGTGGGGAGTGGG--GGCCTGGCCTGATGGCATGATTGGCAGGCGGAGCTGATCCGAGAAGACGTCCAGGGGGCTCTGCACGACTACCGGTCTGGCCGCGGGGAGCGCAGGCCCGCAGCGCTCAGGTAAGGGCGCTGGGCTGGAAGCAGGGGAGAAGAGAGGCTGGGTGGGGTGTCTGGGAGGCCAGCCTCCCCTCTCTGGGCCT-------------------CCGTCCCCTCTCCTTCGGACAGTGAGCTGATGC-CCCTACCCTAGAACAGCACA--AGTTTTGAAGCCCGCCAA--ACAGCCTGGTTCGAGTCCTG-CCGTACC-CCCAGACATCTGCACCCGATCTCCAAGACCA-CTTTTCCTAATTCTGGTCCTCGGTTTCTCCTCCTTCGGGCCTCAGTTTCCCTCTGGAGAGGTGTTCCC-------------------------CTTCCCCATATCTCCGGTTTTTTCCTCCCCTGG--------GTCTGATTCCGCTGGGCCG-------CA--GTGTCTC-CGTTTTAAGACCGACTTTATCCCCTGCCCTGTCCCCC--GTGGACTCAAGCT--GTCTCCCTTTGTCCCACCACAGGGCCACGCAAGAGGAGTTGCAGCGCCACCCCTCACC
i canFam3.chr1                  C 0 C 0

a score=1867958.000000
s hg38.chr19_GL949751v2_alt        999631 714 +   1002683 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCGTCAGTCCGCGCAGTGATCAGCACCGTAGAGCGGGGCGCGGGCCGCGGACGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGGCGCAGAGGCCTGAGCCGGTGGGGACCTCGAGCAACGCTGACTCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCTGACCTGGCGGTTCTGCAGGCGGAGCGGGAAGTGGTGAGCCGCTAAGGAAGGGGTCTGggggcagggccaggcgactggaggcggggctag-ggcgtgga-------------agggcggggccggctgcgggacgggCGTTC--------TCTGGTCAGACTTCTGCGTTATGGAAGAGGGGCT-GGGTCGGGGGCGGGGCTTGG--TTGTGGGGCGTGGCCAGGTGTTTGGGGCGTGGCCTGATCTGGGGAAGTGTATAGGTGCTCAGGTTCAGGGCTTCGACGGGGAT--GGTTTTGGAACTCGGGAGCCCTGAG-------------------------------------------------CGTCCCCCTC-----------------------------------CTCTGTCCCCTAGGACATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTTGTATCGAGGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTGGAGCACCGGGAACGCGGCCGCAGGAGCCGGCGCCGGGCGGCTGGGGGTAAGGGGCACCCTGGCGTGGGATCTGAA-CCCCCTCCCGATCTCTTCCAAATGTCCCCGCTCTCCCCAGGCTCTCCCCTCC
s panTro4.chr19                  59993935 718 +  63644993 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCGTCAGTCCGCGCAGTGATCAGCACCGTAGAGCGGGGCGCGGGCCGCGGACGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGGCGCAGAGGCCTGAGCCGGTGGGGACCTCGAGCAACGCTGACTCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCTGACCTGGCGGTTCTGCAggcggagcgagaagtggtgagccgcgaaggaaggggtctgggggcgggaccaggcgactggaggcggggctag-ggcgtgga-------------agggcggggccggctgcgggacgggCGTTCTCTG----TCTGGTCAGACTTGTGCGTTATAGAAGAGGGGCT-GGGTCGGGGGCGGGGCTTGG--TTGTGGGGCGTGGCCAGGTGTTTGGGGCGTGGCCTGATCTGGGGAAGTGTATAGGTGCTCAGGTTCAGGGCTTCGACGGGGAT--GGTTTTGGAACTCGGGAGCCCTGAG-------------------------------------------------CTTCCCCCTC-----------------------------------CTCTGTCCCCTAGGACATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTTGTATCGAGGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTGGAGCACAGGGAACGCGGCCGCAGGACCCGGCGCCGGGCGGCTGGGGGTAAGGGGCATCCTCGCGTGGCATCTGAA-CCCCCTCCCGATCTCTTCCAAATGTCCCCGCTCTCCCCAGGCTCTCCCCTCC
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56949164 722 +  60714840 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGTCCGTCAGTCCGCGCAGTGATCAGCACCGTAGAGCGGGGCGCGGGCCGCGGACGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGGCGCAGAGGCCTGAGCCGGTGGGGACCTCGAGCAACGCTGACTGGGCCTCCCCAGACCTGGGTCCCCGGGGTCCTGACCTGGCGGTTCTGCAggcggagcgggaagtggtgagccgcgaaggaacgggtctgggggcggggccaggcgactggaggcggggctag-ggcgtgga-------------agggcggggccggctgcgggacgggAGTTCTCTGTCAATCTGGTCAGACTTCTGCCTTATGGAGGAGGGGCT-GGGTCGGGGGCGTGGCTTGG--TTGTGGGGCGTGGCCATGTGTTTGGGGCGTGGCCTGATCTGGGGACGTGTGTAGGTGCTCAGGTTCAGGGCTTCGACGGGGAT--GGTTTTGGAACTCGGGAGCCCTGAG-------------------------------------------------CGTTCCCCTC-----------------------------------CTCTGTCCCCCAGGACATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTTGTATCGAGGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTAGAGCACCGGGAACGCGGCCGCAGGACACGGCGCCGGGCGGCTGGGGGTAAGGGGCACCCTCGCGTGGGATCTGAA-CCCCCTCCCGATCTCTTCCAAATGTCCCCGCTCTCCCCAGGCTCTCCCCTCC
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103417557 723 - 106955855 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCATCAGTCCGCGCAGTGATCAGCATCTTAGAGCGGGGCGCGGGCCGCGGACGACCCCAGGCGAAGCCCATTCCCGAGGCAGACGAGGCGCAGAGGCCTGAGCCGGTGGGGACCTCGAGCAACTCTGACTCGGCCTCCCCGGAACTGGGTCCCCGGGGTCCCGACCTGGCGGTTCTGCAGGCGGAGCGGGAAGTGGTGAGCCGCGAGGGAAGGGGTCTGggggcggggccaggcgactgaaggcggggctag-ggcgtgga-------------agggcggggccggctgcgggacgggAGTTCTCTGTCAATCTGGTCAGACTTCTGCGTTATGGAGGAGGGGCTGGGGTCGGGAGCGGGGCTTGG--TTGTGGGGCGTGGCCAGGTGTTTGGGGCGTGGCCTGATCTGGGGACGTGTGTAGGTGCTCAGGTTCAGGACTTTGACGGGGAT--GGTTCTGGAACTCGGGACCCCTGAG-------------------------------------------------CGTCCGCCTC-----------------------------------CTCTGTCCCCCAGGACATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTTGTATCAAGGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTGGAGCACCGGGAACGCGGCCGCAGAACCCGGCGCCGGGCGGCTGGGGGTAAGGAGCACCCCTGCGTGGTATCTGAA-CCCCTTCCCGATCTCTTCCAAATGTCCCCGCTCTCCCCAGGGTCTCCCCTCC
i nomLeu3.chr10                 C 0 C 0
s macFas5.chr19                  55885154 714 +  59248254 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCGTCCGTCCGCGCAGTGATCAGCACCGTGGAGCGGGGCGCAGGCCGCGGGCGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGACGCAGAGGCCTGGGCCCGCGGGGACCTCGAGCAGCGCTGACCCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCTGACCTGGCGGCTCTGCAGGCGGAGCGGGAAGTGGTGAGCCGCGCGGGAAAggggctgggggcggggccagacgactggaggcggggctag-ggcgtgg--------------ggGGCGGGGCCAGCTGCGGGATAGGAGTTCTCCGTCAATCTGGTCAGACTTCGGCGTTATGGAGGCGGGGAA-------GGGGCGGGGCTTGG--TTGTAGGGCGTGGCCAGGTGTTTGGGGCGGGGCCTG-TCTGGAGACGTGTCTAGGTGCTCAGGTTCAGGGCTTCGACGGGGAT--GGTTTTGGAACTCGGGAGCCCTGAG-------------------------------------------------CGTCCCCCTC-----------------------------------CTCTGTCCCCCAGGACATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTCGTATCGAGGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTGGAGCACCGGGAACGCGGCCGCAGGACCCGGCGCCGAGCGGCTGGGGGTAAGG-GCACCCCCGCGTGGGATCTGAACCCCCCTCCCGATCACTTCCAGATGCCCCCCCTCTCCCCAGGGTCTCCCCTCC
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47973666 715 +  51301725 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGTCCGTCCGTCCGCGCAGTGATCAGCACCGTGGAGCGGGGCGCAGGCCGCGGGCGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGGCGCAGAGGCCTGGGCCTGCGGGGACCTCGAGCAGCGCTGACCCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCTGACCTGGCGGTTCTGCAGGCGGAGCGGGAAGTGGTGAGCCgcgcgggaaaggggctgggggcggggccagatggctggaggcggggctgg-ggcgtgga-------------agggcggggtcagctgcgggATGGGAGTTCTCCGTCAATCTGGTCAGACTTCGGTGTTATGGAggaggggcg-------ggggcggggcttgg--ttgtagggcgtggccaggtgtgtggggcggggcctg-tctggggACGTGTCTAGGTGCTCAGGTTCAGGGCTTCGACGGGGAT--GGTTTTGGAACTCGGGAGCCCTGAG-------------------------------------------------CTTCCccctc-----------------------------------ctctgtcccccaggaCATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTCGTATCGAGGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTGGAGCATCGGGAACGCGGCCGCAGGACCCGGCGCCGAGCGGCTGGGGGTAAGG-GCACCCCCGCGTGGGATCTGAAcccccctcccgatcacttccagatgccccccctctccccagggtctcccctcc
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47673087 714 +  50890351 CGCCGCTGAGACCCCGCCCCTGCAGCGCCGTCCGTCCGTCCGCGCAGTGATCAGCACCGTGGAGCGGGGCGCGGGCCGCGGGCGACCCCAGGCGAAGCCCATTCCCGAGGCAGAGGAGGCGCAGAGGCCTGGGCCGGCGGGGACCTCGAACAGCGCTGACCCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCTGACCTGGCGGTTCTGCAggcggagcgggaagtggtgagccgcgcggggaaggggctgggggcggggccagacgactggaggcggggctag-ggcgtgga-------------agggcggggcCAGCTGCGGGATGGGAGTTCTCCGTCAATCTGGCCAGATTTCTGCGTTATGGAGGCGGGGCG-------GGGGCGGGGCTTGG--TTGTAGGGCGTGGCCAGGTGTTTGGGGCGGGTCCTG-TCTGGGGACGTGTCTAGGTGCTCAGGTTCAGGGCTTCGACGGGGAT--GGTTTTGGAACTCGGGAGCCCTGAG-------------------------------------------------CGTCCCCCTC-----------------------------------CTCTGTCCCCCAGGACATCCTGAACCACGTGTTCGACGACGTAGAGAGCTTCGTATCGACGCTGCAGAAGTCGGCGGAGGCGGCCAGGGTGCTGGAGCACCGGGAACGCGGCCGCAGGACCCGGCGCCGAGCGGCTGGGGGTAAGG-GCACCCCCGCGTGGGATCTGAACCCCCCTCCCGATCACTTCCAGATG-CCCCCGTCTCCCCAGGGTCTCCCCTCC
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     81699 709 +    138250 CGCCGCGGAGACCCCGCCCCTGCAGCGCCGCCCGTCTGTTCGCGCAGTGATCAACCCCGTGGAGCGGGGCACGGACCGCGGGCGTCTCCAGGCGGAGCCCATTCCCGAGGTGGAGGAGGCGCAGAGGCCTGGCCCTGCGGGGACCTCGAGCAGCGCTGACCCGGCCTCCCCGGACCTGGGTCCCCGGGGTCCAGACCTGGCGGGTCTACAGGCGGAGCGGGAAGTGGTGAGCATCGTGGAATGGGATCTGGGGGCGGGGCAAGACGGCTGGAGGCGGGGCTAG-GACGTGGA-------------AGGGCGGGGCCGGCTGCGGGACTTGAGTTCTCTGTCAATCGGATCAGACTTCTGCGTTATGGAGGAGGGGCT-GTGGTAGGGGCGTGGCTTGG--CTGTAGGGCGTGGCCAGCTGTTTGGGGCGTGGTCTG------------GTCTAGGTGCGCAGGTTCAGGGCTTCGATGGAAAT--GGTTGTGGAACTCAGAAGCCC-AAG-------------------------------------------------CGTCCCCCTT-----------------------------------CTCTGTCTCCCAGGACATACTGAATCACGTCTTTGACGACGTGGAGAACTTTGTACAGAAGCTGCAGAAATCAGCGGAGGCGGCCAGGGTGCTGGAGCACCGGGAACGCGGCCGCAGGACCCGGCGCCGGGAGGCTGGGGGTAAGGGACGCCCCCGCCTGAGATCTGAA-CCCCCTCGCGATAACTTCCAAATGTCCCCCATCTCCCCAGCGTCTCCCCTCC
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20154954 763 - 122678785 GGCGGCCGAGACCCCTCCGCTGCAGCGCAGCCCTTCGGTCCGCGCCGTCATCAGCATAGGGGAG------GCGGGCCGGGGGCGACCTCGGGCGGGGCCCATCCCCGAGGTGGAGGAGCCCCAGAGACCCGGGCAGGAAGGAACCTCAGGGAACGCCAACCCAGCCTCCCCGGACCTGGGCCCCCGGGGGCCGGACCTGGCCAGTCTGCAGGCGGAGCGGGACGTGGTGA-------------------GGGGGCGGGGCCAAG-GCATGGAGGCGGGGCCGGCGGTGGGGAGTCCCAGCTTCAGGGGGTGGGGCCTGATGGGGTGTGGGAGT--------------GTCAGACTTC-------TGGGGGTGTGGCT---------GGCGGTGACTGGAATATGAGGACCCGGCCCGCAGCAGAGGGAACGGCCTGGCCTGGGAGGATATCAGGGCCCTT-GGCTGCGGGTTTTGGGGGTGATGCGGGGCCAGGACTCCACATCCCTGAGTCCCCCTGCTCTGACCCGTGCTCTGTCCTCCGGTTCTGTCCTCCGGCTCCgtcccccacactgtcccccacactgtcccccacgctgtcccTCGCCCTGACCCCCAGGACATCCTGAACCACGTGTTCGACGATGTGGAGAGTTTCGTCTCGAAGCTGCAGAAGTCAGCAGAGGCAGCCCGGGTGCTGGAGCACCGGGAGCGTGGCCGCAGGACCCGGCGCCGGGCAGCTGGGGGTGAGAGGCTCCCCAG-GGGGATCCTGAA-----CATCCAGTCCCTCCCAAATATCCTCGCTCTCCCTAGGGTCCCCCCACA
i canFam3.chr1                  C 0 C 0
e rheMac3.chr19                  60727285 697 +  64156825 M

a score=7526905.000000
s hg38.chr19_GL949751v2_alt       1000345 2329 +   1002683 -CGCCACTTGCCAGGGCTGACCTCACCGCCAT-----CTTAACCGGGTGTCCAC----CTCTCTCTGCCTGCCTGGTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCTGCTCCCCTCAGAGGGCTTGCTGACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGC---CCGCCCCTGGGCC-GGGGCGCGGGCACGACGAACCTGTCCcgtcccc---gcacccacgccaaccacctccctccccacgccccaggcccGGCTGCGCGGCAACATCGCCGACCCCTCCTCTCCGGAGCTGTTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGCCCTCGGGC-CCCCCTGCAGCGGGAGGAATCG-GGTTCGACTTGTAGAAGGTGTGGCGGCACAGCCTG-CCCCTCCTGCTCCCCTGACAGATTGTGAACACGTCGGGGGGGCCGGAGTTCGCGAGCAGTGTGCGGCGGCCGCATCTGACATCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCGGGGCTGGGAGGCAGGG-GGCATGGTGATTGGAGGAGCATAA-GGCG---------------------------------------CTGGGAGGTGGGTGGCATGATGATTGGAAAATAGGACTAGGAGAGTAGGGAGGGGTTAGAGGCGTGGCTTAGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGAGGAAAGGCCAGGAATTAACGTGAAGGAAAGATTTAAGACCACCAGACCAATCGGATTGAAAGAAAAGg-ggggcttaaaggaatagaggggctaggggctacggggcaggggcggggctacgcgaaggggcggggctTCTGGAAGGTTTGGTCTATAACTTTGGTGATGGGACAGAGTCTGTGCAC-TGCGGGCTGGCAGTTCCGCAGGGAAAGGGTCAGAACCTGAAACCGACCTTACGGA---AAACCTGATTTGG---AATC--AGGTGAGATTTAGAGGCTGGATAAGGCAAtttttttcc--------agagagagagatggatg--------------gggtctcaatattttgcccaggctggtctggaactcctggcctcaagcgatcctccca-------tcttggcctcccaaaatgctgggattacaggcgtgagccaccgtgcccggtcTAGAAATATAAATTGCTGTT-GAGTTGGGCTTAGAGCTACCGGCAGGACTTGGTGAAAAGTGGCGGGGCTAGAATCGTTGGAATACAGCGAGCTTTAGGGGAAAACTTAGTGAAGTTAATGCAGGAACGAAGTTGGGGG------CTGTATCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCCGCAGGCTGGAGCTGTCCCCGGAGGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTCACTGACCCGCAGAGCCGCGCCTGGGAGGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGA---------------------------------------CCCAAGCGACACAGCAGGGCCGAGGCTGGGAA-------------------------------------------------GTCC-----GGGGGCGCGGCCGGTCCGCCTGGCCCCGCCTGACCCGAC---TGTCTTACTTCCTACAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCAAGGAGGGG-TGCGTCCCGGGGGCTCCCGATGCTGACTCCGCCCCCTTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTCTTCTCAGGTGGGTGAGATGGTGAT-ggggcgggccggggctgggagagagggaggagcagggtggga-gggggcgggACCCAGACTTctggggctaagggagttgggaatggagacccggattcctgggcctaagggaggaagggggctgggagtGGGTAAAGTCTGAGAGGTTGGATCCCTGGATCCCCAAAAGGCTGGAAGAAGCCAGTTTGTTTTCCCAGGGCCTGGGAAGCACCATGC----CTGGGCTCCCTAGGAGGACAGAGCCCTGGATATTGGAGGGGAGAGGCTGGGGAATTGGACCTTTGGGTTTTGAAGAAGAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAGTTTCTGGGAAAGTTAGGAAGTGGTAGTATCTCTGGGCCCCCGAGAGGGGTAAAGGCTGGACGATTAAACTCTTGGTTTTCCAGAGGCTCTAATGC-AATTGTCTAAGTCGCTGCTGGGTGTCGGACT-----------GGGTTAAAAGGTTTGAGGGTTAAAAGGATAAGA
s panTro4.chr19                  59994653 2322 +  63644993 -CGCCACTTGCCAGGGCTGACCTCACCACCAT-----CTTAACCGGGTGTCCAC----CTCTCTCTGCCTGTCTGGTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCTGCTCCCCTCAGAGGGCCTGCTGACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCCTGGGCC-GGGGCGCGGGCACGGCGAACTTGCCCCGTCCCC---GCACCCACGCCAACCACCTCCCTCCCCACGCCCCAGGCCCGGCTGCGCGGCAACATCGCCGACCCCTCCTCTCCGGAGCTGTTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGACCCTCGGGC-CCCCTTGCAGCGGGAGGAATCG-GGTTCGACTTGTAGAAGGTGTGGCGGCACAGCCTG-CCCCTCCTGCTCCCCTGACAGATTGTGAACACGTCGGGGGGGCCGGAGTTCGCGAGCAGTGTTAGGCGGCCGCACCTGACGTCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGTTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCGGGGCTGGGAGGCAGGG-GGCATGGTGATTGGAGGAGCATAA-GGCG---------------------------------------CTGGGAGGTGGGTGGCATGATGATTGGAAAATAGGACTAGGAGGGGAGGGACGGGTTAGAGGCGTGGCTTAGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGAGGAAAGGCCAGGAATTAACGTGAAGGAAAGATTTAAGACCACTAGACCAATCGGATTGAAAGAAAAGG-GGGGCTTAAAGGAATAG-------AGGGGCTACGGGGCAGGGGCGGGGCTACGCGAAGGGGCGGGGCTTCTGGAAGGTTTGGTCTATAACTTTGGTGATGGGACAGAGTCTGTGCAC-TGCGGGCTGGGAGTTCCGCAGGGAAAGGGTCAGAACCTGAAACCGACCTTATGGA---AAACCTGATTTGG---AATC--AGGTGAGATTTAGAGGCTGGATAAGGCAATTTTTTTCC--------AGAGAGagagatggatt--------------gggtctcaatattttgcccaggctggtctggaactcctggcctcaagcgatcctccca-------tcttggcctcccaaaatgctgggattacaggcgtgagccacggtgcccggtcTAGAAATATAAATTGCTGTT-GAGTTGGGCTTAGAGCTACCGGCAGGACTTGGTGAAAAGTGGCGGGGCTAGAATCGTTGGGATACAGCGAGCTTTAGGGGAAAACTTAGTGAAATTAATGACAGAACGAAGTTGGGGG------CTGTACCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCCGCAGGCTGGAGCTGCCCCCGGAAGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTCACTGACCCGCAGAGCCGCGCCTGGGAGGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCTGGCAGGTGA---------------------------------------CCCAAGCGACACAGCAGGGCCGAGGCTGGGAA-------------------------------------------------GTCC-----GGGGGCGCGGCCGGTCCGCCTGGCCCCGCCTGACCCGAC---TCTCTTACTTCCTACAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCCAGGAGGGG-TGCGTCCCGGGGGCTCCCGATGCTGACTCCGCCCCCTTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTTTTCTCAGGTGGGTGAGATGGTGAT-GGGGCGGGCCGGGGCTGGGAGAGAGGGAGGAGCagggaggga-gggggtgggacccagacttctggggccaagggaggagggaatggagacccggattcccgggcctaagggaggaaaggggctgggagtGGGTAAAGTCTGAGAGGTTGGATCCCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGTTTTCCCAGGGCCTGGGAAGCACCATGC----CTGGGCTCCCTAGGAGGACAGAGCCCTGGATATTGGAGGGGAGAGGCTGGGGAATTGGACCTTTGGGTTTTGAAGAAGAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGATCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAGTTTCTGGGAAAGTTAGGAAGTGGTAGTATCTCTGGGCCCCCGAGAGGGGTAAAGGCTGGACGATTAAACTCTTGGTTTTCCAGAGGCTCTAATGC-AATTGTCTAAGTCGCTGCTGGGTGTTGGACT-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i panTro4.chr19                 C 0 C 0
s ponAbe2.chr19                  56949886 2325 +  60714840 -CGCCACTTGCCAGGGCTGACCTCACCGCCAT-----CTTAACCGGGTGTCCAC--CTCTCTCTCTGCCTGCCTGGTGCTGGCCCCGCGTCCCCGTCGCCGCGCC--CGTCTGCACCCCTCAGAGGGCCTGCTGACGCTGCGGGCCAAGCCGCCTTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCAAGGGCC-GGGGCGCGGGCACGGCGAACCAGCCCCGTCCCC---GCACCCACGCCAACCACATCCCTCCCCACGCCCCAGGCCCGGCTGCGCGGCAACATCGCCGACCCCTCCTCTCCGGAGCTGTTGCACTTCCTTCTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGCCCTCGGGC-CCCCCTGCAGCGGGAGGACTCG-TGTTCGACTCGTAGAAGGTATGACGGCAC--CCTGCCCCCTCCTGCTCCCCTGACAGATTGTGAACACGTCGGGGGGGCCGGAGTTCGCGAGCAGCGTGCGGCGGCCGCACCTGACATCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCATGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGACGGGGCTGGGAGGCAGGG-GGCGTGGTGATTGGAGGAGCATAA-GGGG---------------------------------------CTGGGAGGTGGGTGGCATGATGATTGGAAAATAGGACTAGGAGGGAAGGGAAGGGTTAGAGGCGTGGCTTAGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGAAGAAAGGCCAGGAATTAACGTGAAGGAAAGATTTAAGACCACCAGACCAATCAGATTGAAAGAAATGGTGGGGCTTAAAGGAATAG-------AGGGGCTACGGGGCAGGGGCGGGGCTACGCGAAGGGGCGGGGCTTCTGGAAGGTTTGGTCTGTAACTTTGGTGATGGGACAGAGTCTATGCAC-TGGGGGCTGGGAGTTCCGCAGGGAAAGGGTCAGAACCTGAAACCGACCTTATGGA---AAACCTGATTTGG---AATC--AGGTGAGATTTAGAGGCTGGATAAGGCAAtttttttcc--------agagagagagatggatg--------------gggtctcagtattttgcccaggctggtctggaactcctggcctcaagcgatcctccca-------tcttggcctcccaaaatgctgggattacaggcgtgagccaccgtgcccggtcTAGAAATATAAATTGCTGTT-GAATTGGGCTTAGAGCTACTGGCAGGACTTGGTGAAAAGTGGCGGGGCTAGAATCGTTGGGATACAGCGAGCTTTAGGGGAAAACTTCGTGAAGTTAATGACAGAACTAAGTTGGGGG------CTGTACCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCCGCAGGCTGGAGCTGCCTCCGGACGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTCACTGACCCGCAGGGCCGCGCCTGGGAGGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGA---------------------------------------CCCAAGTGACACAGCAGGGCCTAGGCTGGGAA-------------------------------------------------GTCC-----GGGGGCGCGGCCGGTACGCCTGGCCCCGCCTGACCCGAC---TCTCTTACTTCCTACAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGAAAG-GGGGTCCAGGAGGGG-TGCGTCCTGGGGGCTCCCGGTGCTGACTCCGCCCCCTTTTTTTCTGTGTTTTCCCT----TCTTCCTGGCTCTTCTCAGGTGGGTGAGATGGTGAT-GGGGTGGGCTGGGGCCGGGAGAGAGGGAGGAGCAGGgagggaggggggagggacctagacttctggggccaagggaggagggaatggagacccgggttcccgggcctaagggaggaaaggggctgggagtGGGTAAAGTCTGAAAGGTTGGATCCCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGTTTTCCTAGGGCCTGGGAAGCACTATGTCTGGCTGGGCTCCCTATGAGGACAGAGCCCTGGATATTGGAGGGGAGAGGCTGGGGGATTGGATCTTTGGGTTTTGAAGAAGAGCCCAAATC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGTGCAAGTTTCTGGGAAAGTTAGGAAGTAATAGTATCTCTGGGCCCTCAAGAGGGGTAAAGGCTGGACGATTAAAGTCTTGGTTTTCCAGAGGCTCTAATGC-AATTGTCTAAGTCGCTGCTGGGTGTCGGACA-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i ponAbe2.chr19                 C 0 C 0
s nomLeu3.chr10                 103418280 2326 - 106955855 -CGCCACTTGCCAGGGCTGACCTCACCGCCAT-----CTTAACCGGGTGTCCACCTCTCTCTCTCTGCCTGCCTGGTGCGGGCCCCGCGTCCCCATCGCCGCGCC--CGTCTGACCCCCTCAGAGGGCCTGCTGACGCTGCGAGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCCTGGGCC-AGGGCGCGGGCACGGCGAACCTGccccgtcccc---gcacccacgccaaccacctccctccccacgccccaggcccGGCTGCGCGGTAACATCGCCGACCCCTCCTCTCCGGAGCTGTTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGCCCTCGGGC-CCCCCTGCAGCGGGAGGAATCG-GGTTCGACTTGTAGAAGGTGTGACGGCACAGCCTGCCCCCTCCTGCTCCCCTGACAGATTGTGAACACGTTGGGGGGGCCCGAGTTCGCGAGCAGCGTGCGGCAGCCGCACCTGACATCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCGGGGCTAGGAGCCAGGG-GGCGTGGTGATTGGAGGAGCATAAGGGGG---------------------------------------CTGGGAGGTGGGTAGCATGATGATTGGAAAATAGGACTAGGAGGGTAGGGACGGGTTAGAGGCGTGGCTTAGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGAGGAAAGGCCAGGAATTAACGTGAAGGAAAGATTTAAGACCACCAGACCAATCAGATTGAAAGAAAAGGTAGGGTTTAAAGGAATAG-------aggggctacggggcaggggcagggctacgcaaaggggcggggcTTCTGGAAGGTTTGGTCTATAACTTTGGTGATGGGACAGAGTCTGTGCAC-TGGGGGCTGGGAGTTCCGCAGGGAAAGGGTCAGAACCTGAAACCGACCTTATGGA---AAACCTGATGTGG---AATC--AGGTGAGATTTAGAGACTGGATAAGGCAAtttttttcc--------agagagaaaggtggatg--------------gcgtctcaatatgttgcccaggctggtctggaactcctggcctcaagcgatcctccca-------tcttggcctcccaaaatgctgggattacaggcgtgagccaccgcgcccggcGTAGAAATATAAATTGCTGTT-GAGTTGGGCTTAGAGCTACCGGCAGGACTTGGTGAAAAGTGGCGGGGCTAGAATCGTTGGGATACAGCGAGCTTTAGGGGAAAACTTAGTGAAGTTAATGACAGAACTAAGTTGGGGG------CTGTACCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCCGCAGGCTGGAGCTACCCCCGGAAGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTCACTGACCCGCAGGGCCGCGCCTGGGAGGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGA---------------------------------------CCCAAGCGACACAGCAGGGCCAAGCCTGGGAA-------------------------------------------------GTCC-----GGGGGCG-GGCCGGTCCGCCTGGCCCCGCCTGACCCGAC---TCTCTTACTTCCTACAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCCAGTAGGGG-TGCGTCCCGGGGGCTCCCGGTGCTGACTCCGCCCCCTTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTCTTCTCAGGTGGGTGAGATGGTGAT-GGGGCGGGCCGGGGCCGGGAGAGAGGGAGGAGCagggaggga-gggggcgggacccagacttctggggccaagggaggagggaatggagatcggggttcccgggcctaggggaggaaaggggctgggagtGGGTAAAGTCTGAGAGGTTGGATCCCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGTTTTCCCGGGGCCTGGGAAGCACCGTGC----CTGGGCTCCCTGTGAGGACAGAGCCCTGGATATTGGAGGGGGGAGGCTGGGGAATTGGACCTTTGGGTTTTGAAGAATAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAATTTCTGGGAAAGTTAGGAAGTGGTAGTA--CCTGGGTCCCCGAGAGGGGTCAAGGCTGGACGATTAAACTCTTGGTTTTCCAGAGGCTGTAATGC-AATTGTCTAAGTCGCTGCTGGGTGTCGGACT-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i nomLeu3.chr10                 C 0 C 0
s rheMac3.chr19                  60727982 2367 +  64156825 -CGCCACTTACCAGGGCTGACCTCACAGCCAT-----CTTAACCGGGTGTCCAC--CTCTCTCTCTGCCTGCCTGGTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCGGC-CCCCGCAGAGGGCCTGCTGACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCCTGGGCC-GGGGCGCGGGCACGGCGAAGCTGCCCCGTCCCC---GCACCCACGCCAACCATCTCCCTCCCCACGCCCCAGGCCCGGCTGCGCGGCAACATCGCCGACCCCTCCTCCCCGGAGCTGCTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGTCCTCGGGC-CCCCCTGCGGCGGGAGGAATCG--GTTCGACTTGCAGACGGTGTGACGGCACGGCCTGCCCCCTCCCGCTCCCCTGACAGATTGTGAACACGTCGGGGGGGCCCGAGTTCGCGAGCAGCGTGCGGCAGCCGCACCTGACGTCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCGGGACTGGGAGGCGGGG-GGCGTGGTGATTGGAGGAGCTTAA--GGG---------------------------------------CTGGGAGATGAGTGGC---ATGATTGGAAAATGAGACTAGGAGGAAAGGGACAGGTTGGAGGCGTGGCTTCGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGCGGAAAGGCCAGAAATTAATATGAAGGAAAGATTTAAGACCAGCAGACCAATCAGATTGAAAGAAAAGGTGGGGCTTAAAGGAATAG-------AGGGGCTACGGGGCAGGAGCGGGGCTACGCGAAGGGGCGGGGCTTCTGGAAAGTTTGGTCTATAACTTTGGCGATGGGACAGAGTCTGTGCAC-TGGGGGCTGGGAGTTTCGTAGGGAAAGGGTCAGAACCTGAAACCGAGCTTAAGGA---AAACCTGATTTGG---AATCAGAGGTGAAATTTAGAGGCTAGATAAGGCAATTTTTTTTC---CAGAGAGAGAGAGAGATGGATGGGCGTGGG--GGGCgggtctcaatatgttgcccaggctggtcttgaactcctggcctcaagcgatccttcca-------tcttggcctcccaaaatgctgggattacaggcgtgagccactgcacccggccTAGAAATATAAATTACTGTT-GGGTTGGGCTTGGAGGTACCGGCAGGACTTGGTGAAAAGTGGCGGGGCTAG----------ATACAGAGAGCTTTAGGGGAAAACTTAGTGAAGTTAATGACAGAGCTCAGCTGGGGG------CTGTACCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCTGCAGGCTGGAGCTGCCCCCGGAAGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTTACTGACCCGCAGGGCCGCGCTTGGGAAGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGAGGCTGAGGCTTTC--------AGGGGAGCAGCCAACTCCCCC-AGCCACACGGC----------------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------GGCCCCGCCTGACCCGAC---TCTCTTACTTCCTGCAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCCAGGAGGGG-TGCTTCCCGGGGGCTCCCGGTGTTGACTCCGCCCCCTTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTCTTTTCAGGTGGGTGAGATGGTGAA-GGGGCGGGCCGGGGCCGGGAGAGAGGGAGGAGCagggaggga-gggggcgggatccagacttctggggccaagggaggagggaatggagaccggggtttccgggcctacgggaggaaaggggctgggagtGGGTAAAGTCTGAGAGGTTGGATCTCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGGTTTCTCAGGGCCTGGGAAGCACCATGT----CTGGGCTCCCTACGAGGACAGAGCCCTGGATATTGGAGGGGAGAGGCTGGGGAATTCGACCTTTGGGTTTTGAAGAAGAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAGTTTCTGGGAAAGTTAGGAAGTGGTAGTATCTCTGGGCCCCGGAGAGGGGTAAAGGCTGGGTGATTAACCTCTTGGTTTTCCAGACGCTCTAATGC-AATTGTCTAAGTCACTGCTGGGTGTCGGACT-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i rheMac3.chr19                 M 697 C 0
s macFas5.chr19                  55885868 2368 +  59248254 -CGCCACTTACCAGGGCTGACCTCACAGCCAT-----CTTAACCGGGTGTCCAC--CTCTCTCTCTGCCTGCCTGGTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCGGC-CCCCGCAGAGGGCCTGCTGACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCCTGGGCC-GGGGCGCGGGCACGGCGAAGCTGccccgtcccc---gcacccacgccaaccacctccctccccacgccccaggcccGGCTGCGCGGCAACATCGCCGACCCCTCCTCCCCGGAGCTGCTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGTCCTCGGGC-CCCCCTGCGGCGGGAGGAATCG--GTTCGACTTGCAGACGGTGTGACGGCACGGCCTGCCCCCTCCCGCTCCCCTGACAGATTGTGAACACGTCGGGGGGGCCCGAGTTCGCGAGCAGCGTGCGGCAGCCGCACCTGACGTCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCGGGACTGGGAGGCGGGG-GGCGTGGTGATTGGAGGAGCTTAA--GGG---------------------------------------CTGGGAGATGAGTGGCATGATGATTGGAAAATGAGACTAGGAGGAAAGGGACAGGTTGGAGGCGTGGCTTCGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGCGGAAAGGCCAGAAATTAATATGAAGGAAAGATTTAAGACCAGCAGACCAATCAGATTGAAAGAAAAGGTGGGGCTTAAAGGAATAG-------AGGGGCTACGGGGCAGGAGCGGGGCTACGCGAAGGGGCGGGGCTTCTGGAAAGTTTGGTCTATAACTTTGGCAATGGGACAGAGTCTGTGCAC-TGGGGGCTGGGAGTTTCGTAGGGAAAGGGTCAGAACCTGAAACCGAGCTTAAGGA---AAACCTGATTTGG---AATCAGAGGTGAAATTTAGAGGCTAGATAAGGCAATTTTTTTTC---CAGAGAGAGAGAGAGATGGATGGGCGTGGG--GGGCgggtctcaatatgttgcccaggctggtcttgaactcctggcctcaagcgatccttcca-------tcttggcctcccaaaatgctgggattacaggcgtgagccactgcacccggccTAGAAATATAAATTACTGTT-GGGTTGGGCTTGGAGGTACCGGCAGGACTTGGTGAAAAGTGGCGGGGCTAG----------ATACAGAGAGCTTTAGGGGAAAACTTAGTGAAGTTAATGACAGAGCTCAGCTGGGGG------CTGTACCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCTGCAGGCTGGAGCTGCCCCCGGAAGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTTACTGACCCGCAGGGCCGCGCTTGGGAAGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGAGGCTGAGGCTTTC--------AGGGGAGCAGCCAGCTCCCCCAAGCGACACGGCAGGGCCGAGGCTGGGAA-------------------------------------------------CTCCGGGGTGGGGGCGTGGCCGGTCCGCCTGGCCCCGCCTGACCCGAC---TCTCTTACTTCCTGCAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCCAGGAGGGG-TGCTTCCCGGGGGCTCCCGGTGTTGACTCCGCCCCCTTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTCTTTTCAGGTGGGTGAGATGGTGAA-GGGGCGGGCCGGGGCCGGGAGAGAGGGAGGAGCagggaggga-gggggcgggatccagacttctggggccaagggaggagggaatggagaccggggtttccgggcctaagggaggaaaggggctgggagtGGGTAAAGTCTGAGAGGTTGGATCTCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGGTTTCTCAGGGCCTGGGAAGCACCATGT----CTGGGCTCCCTACGAGGACAGAGCCCTGGATATTGGAGGGGAGAGGCTGGGGAATTCGACCTTTGGGTTTTGAAGAAGAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAGTTTCTGGGAAAGTTAGGAAGTGGTAGTATCTCTGGGCCCCGGAGAGGGGTAAAGGCTGGGTGATTAACCTCTTGGTTTTCCAGACGCTCTAATGC-AATTGTCTAAGTCACTGCTGGGTGTCGGACT-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i macFas5.chr19                 C 0 C 0
s papAnu2.chr19                  47974381 2365 +  51301725 -cGCCACTTACCAGGGCTGACCTCACAGCCAT-----CTTAACCGGGTGtccac--ctctctctctgcctgcctggTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCGGC-CCCCGCAGAGGGCCTGCTGACACTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCCTGGGCC-GGGGCGCGGGCACGGCGAAGCTGCCCCGTCCCC---GCACCCACGACAACCACCTCCCTCCCCACGCCCCAGGCCCGGCTGCGCGGCAACATCGCCGACCCCTCCTCCCCGGAGCTGCTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGTCCTCGGGC-CCCCCTGCGGCGGGAGGAATCG--GTTCGACTTGCAGACGGTGTGACTGCACGGCCTGCCCCCTCCCGCTCCCCTGACAGATTGTGAACACGTCgggggggCCCGAGTTAGCGAGCGGCGTGCGGCGGCCGCACCTGACGTCGGATGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCGGGACTGGGAGGCGGGG-GGCGTGGTGATTGGAGGAGCTTAA-GGGG---------------------------------------CTGGGAGATGAGTGGCATGATGATTGGAAAATGAGACtaggaggaaagggaaaggtTGGAGGCGTGGCTTCGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGCGGAAAGGCCAGAAATTAATATGAAGGAAAGATTTAAGACCAGCAGACCAATCAGATTGAAAGAAAAGGTGGGGCTTAAAGGAATAG-------AggggctacggggcaggggcggggttacgcgaaggggcggggcTTCTGGAAAGTTTGGTCTATAACTTTGGCGATGGGAC--AGTCTGTGCAC-TGGGGGCTGGGAGTTTCGTAGGGAAAGGGTCAGAACCTGAAGCCGAGCTTAAGGA---AAACCTGATTTGG---ACTCAGAGGTGAAATTTAGAGGCTAGATAAggcaattttttttc---c--agagagagagagatggatgggCGTGGG--GGgcgggtctcaatatgttgcccaggctggtcttgaactcctggcctcaagcgatccttcca-------tcttggcctcccaaaatgctgggattacaggcgtgagccactgcacccggcctagaaatataaattactgTT-GAGTTGGGCTTGGAGGTACCGGCAGGACTTGGTGAAAAGTGGCGGGGCTAG----------ATACAGCGAGCTTTAGGGGAAAACTTAGTGAAGTTAATGACAGAGCTCAGCTGGGGG------CTGTACCAGGATCCCTGAGCtcttggccctggccctggctgcAGGCTGGAGCTGCCCCCGGAAGAGGGCCCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTTACTGACCCACAGGGCCGCGCTTGGGAAGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGAGGCTGAGGCTTTC--------AGGGGAGCAGCCAGCTGCCCCAAGCGACACAGCAGGGCCGAGGCTGGGAA-------------------------------------------------GTCCGGGGTGGGGGCGTGGCCGGTCCGCCTGGCCCCGCCTGACCCGAC---TCTCTTACTTCCTGCAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCCAGGAGGGG-TGCTTCCCGGGGGCTCCCGGTGTTGACTCCGCcccctttttttctgtgtttttccttctgtcttcctgGCTCTTTTCAGGTGGGTGAGATGGTGAa-ggggcgggccggggccgggagagagggaggagcagggaggga-gggggtgggatccagacttctggggccaagggaggagggaatggagACCGGGGTTTCCGGGCCTAAGGGAGGAAAGGGGCTGGGAGTGGGTAAAGTCTGAGAGGTTGGATCTCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGGTTTCTCAGGGCCTGGGAAGCACCATGT----CTGGGCTCCCTACGAGGACAGAGCCCTGGATATTggaggggagaggctggggaATTCGACCTTTGGGTTTTGAAGAAGAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCATAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAGTTTCTGGGAAAGTTAGGAAGTGGTAGTATCTCTGGGCCCCGGAGAGGGGTAAAGGCTGGGTGATTAACCTCTTGGTTTTCCAGACACTCAAATGC-AATTGTCTAAGTCACTGCTGGGTGTCGGACT-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i papAnu2.chr19                 C 0 C 0
s chlSab2.chr6                   47673801 2373 +  50890351 -CGCCACGTACCAGGGCTGACCTCACAGCCAT-----CTTAACCGGGTGTCCAC--CTCTCTCTCTGCCTACCTGGTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCGGC-TCCCGCAGAGGGCCTGCTGACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CCGCCCCTGGGCC-GGGACGCGGGCACGGCGAACCTGccccgtcccc---gcacccacgccaaccacctccctccccacgccccaggcccGGCTGCGCGGGAACATCGCCGACCCCTCCTCCCCGGAGCTGCTGCACTTCCTTTTCGGGCCTCTGCAGATGGTGAG---ACCCGCCCCAGGTCCTCCGGC-CCCCGTGCAGCGGGAGGAATCG--GTTCGACTTGCAGACGGTGTGACGGCACGGCCTGCCCCCTCCCGCTCCCCTGACAGATTGTGAACACGTCGGGGGGGCCCGAGTTCGCGAGCAGCGTGCGGCGGCCGCACCTGACGTCGGATGCCGTGGCGCTTCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGACCCGCCCCGGGTGAGGGGCAGGACTGGGAGGCGGGG-GGCGTGATGATTGGAGGAGCGTAA-GGGG---------------------------------------CTGGGAGATGGGTGGCCTGATGATTGGAAAATGAGACTAGGAGGGAAGGGACAGGTTAGAGGCGTGGCTTCGTTGTGTTGGGGCGGGG---CTTAGGACAGATGCCAAGATTCAATTGGAGGAAAGGCCAGAAATTAATATGAAGGAAA-ATTTAAGACCAGCAGACCAATCAGATTGAAAGAGAAGGTGGGGCTTAAAGGAATAG-------AGGGGCTACGGGGCAGGGGCGGGGCTACGCGAAGGGGCGGGGCTTCTGGAAAGTTTGGTCTATAACTTTGGAGATGGGACAGAGTCTGTGCAC-TTGGGCCTGGGAGTTTCGTAGGGAAAGGGTCAGAACCTGAAACCGAGCTTAAGGA---AAACCTGATTTGG---AATCAGAGGTGAAATTTAGAGGCTAGATAAGGCAAGTTTTTTCCAGACAGAGAGAGAAAGAGATGGATGGGCGGGGGGTGGGggggtctcaatatgttgcccaggctggtcttgaactcctggcctcaagcgatcctccca-------tcttggcctcccaaaatgctgggattacaggcgtgagccgctgcacccggccTAGAAATATAAGTTACTGTT-GAGTTGGGCTTGGAGGTACCGGCAGGACTTGGTGAAAAGCGGCGGGGCTAG----------ATACAGCGAGCTTTAGGGGAAAACTGAGTTAAGTTAATGACAGAGCTCAGTTGGGGG------CTGTACCAGGATCCCTGAGCTCTTGGCCCTGTCCCTGGCCGCAGGCTGGAGCTGCCCCCGGAAGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGGGAGCCGCCGGTTACTGACCCGCAGGGCCGCGCTTGGGAAGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGGCAGGTGAGGCTGAGGCTTTC--------AGGAGTGCAGCCAGCTCCCCCAAGCGACACAGCAGGGCCGAGGCTGGGAA-------------------------------------------------GTCCGGGGTGGGGGCGGGGCCGGTCCGCCTGGCCCCGCCTGACCCGAC---TCTCTTACTTCCTGCAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCAGGGCAAG-GGGGTCCAGGAGGGG-TGCTTACCGGGGGCTCCCGGTGTTGACTCCGCCCCCTTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTCTTTTCAGGTGGGTGAGATGGTGAA-GGGGCGGGCCGGGGCCGGGAGAGAGGGAGGAGCagggaggga-gggggcgggatccagacttctggggccaagggaggagggaatggagacccgggttcccgggcctaagggaggaaaggggctgggagtGGGTAGAGTCTGAGAGGTTGGATCTCTGGATCCCCAAAAGGCTGGAAGAAGGCAGTTTGGTTTCTCAGGGCCTGGGAAGCACCATGC----CTGGGCTCCCTAGGAGGACAGAGCCCTGGATATCGGAGGGGAGAGGCTGGGGAATTGGACCTTTGGATTTTGAAGAAGAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTGGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGGGCTTGGGGGCAAGTTTCTGGGAAAGTTAGGAAGTGGTAGTATCTCCGGGCCCCCGACAGGGGTAAAGGTTGGGTGATTAAACTCTTGGTTTTCCAGACACTCTAATGC-AATTGTCTAAGTCACTGCTGGGTGTCGGACT-----------GGGTTAAAAGGTTTAAGGGTTAAAAGGATAAGA
i chlSab2.chr6                  C 0 C 0
s calJac3.chr22_GL285922_random     82408 2327 +    138250 -CGCCGATTGCCAGGGCTGACCTCACGGCCAT-----CT--AACGGGTGTCCAC--CTCTCTCTCTGCCTGTCTGGTGCTGGCCCCGCGTCCCCATCGCCGCGCC--CGTCTGCCGCCCGCAGAGGGCCTGCTGACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGACGTGCTGCAGAAGATCAAGTACGCCTTCAGCCTGCTGGTGAGGACGCGT---CTgcccccgggccgggggcgcggACACCGCGAACCTGGCCGGTCCCC---GCACCCACGCCAACCACGTCCCTCCCCACGCCCCAGGCCCGGCTGCGCGGCAACATCGCAGACCCCTCCTCCCCGGAGCTGCTGCACTTCCTGTTCGGGCCTCTGCAGATGGTGAG---ACCCGCGCCAGGCCCTCGGGC-TCCCCTGCAGCGGGAGGACTCG-GTTTCGACGTGCAGAAGGTGTGATGGCACGGCCTGCCCCCTCCCGCTCCCCTGACAGATTGTGAACACATCGGGGGGTCCCGAGTTCGCGAGCCGCGTGCGGCGACCGCACCTGACGTCGGAGGCCGTGGCGCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCTGGATCTCGCTGGGGGACTCGTGGACCCGCCCTGGGTGAGGGGCGGGACTGGGAGGCAGGG-GGCGTGGTGATTGGAGGAGCAGAA-GGGGCGGGAGATAGGGGCATGGTGATCCGAGGAGCAGAAGGCACTGGGAGATG-GTGCCATGATGATTGGAAAATGGGACTAGGAGGGAAGGGAAGGGCTAGAGGCGTCGCTTCGTTGAGTAGGGGGGGGGGGTCTTAGGACAAATGTCAAGATTCAATTAGAGGAAAGGCCAGAAATTAACGTGAAGA-------CAAGACCACCAGACCAATCAGATTGAAAGAAAAGGTGGGGCTTAAAAGAACAG-------AGGGGCTACGGGGCACGGACGGGGT--------------------------------ATCTGGAACTTTGGCGATGGGACAGAGTCTCTGCGC-TG-AGTCTGGGAGTTTCGTAGGGAAAGGAGCAGAACATGAATCCGAGCTTAAGGA---AAACCTGATTTGT---AATC--AGGTGAGATTTAGAGGCTGGATAAGGCCAttttttttt---t----ccagatagagacg------------------gagtcccgattccttgcccaggctggtctcgaactcctggtctcaagcgatcctcccatcttggctcttggcctcccaaactgctgggactatagacgtgagccaccgctcccgaccTGGCAGCATAAATTGCTGTT-GAGTTGGGCTTAGCGGTACCGGCGGGACTTGGTGAAAAGGGGCTGAGCTAGAATCTTTGGGATGCAGCGAGCTTTAGGGGAAAAC--AGTGAAGTTAATGACAGAGCTAAGCTGGGGGTTAGCTCTGTACCAGGATTCCTGAGCTCTCGGTCCTCTCCCTGGCCGCAGGCTGGAGCTGCCCCCTGAAGAGGGACCTCCGTACAGACCCGAGTTCTACAGCGGCTGGGAGCCGCCGGCCATTGACCCGCAGGGCCGCCCCTGGGAGGACCCAGTTGAGAAACAGCTACAGCACGAGCGGAGGCGCCGCCAGGTGAGGCTGAGGATTCT--------AGGAGAGCAGCAAGCTCCCCCAAACGACCCAGCAGGGCAGAGGCCGGGAA-------------------------------------------------GTCC-----AGGGGCTTGGCTGATCCACCAGGCCTTGCCTCACCCAAC-----TCTTACTTCCTGCAGCAAAGCGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTC--CGCCCCAGGGCGAGGCAA--GGGGTCCAGGAGGGG-TACGCCCCGGGGGCTCCCGGTGCTGACTCTGCCCCCCTTTTTTCTGTGTTTTTCCTTCTGTCTTCCTGGCTCTTCTCAGGTGGGTGAGATGGTGAC--GGGCGGGCCGGGGC-GGGAGATGGGGAGGAGCagggaggga-gggggcaggacccagatttctggggccaagggaggagggagtggaggcccgggttcccgggcctaagggagaaaaggggctgggagtGGGTAATGTCTGAGA-GTTGGATCCCTGGATCCCC-AAAGGCTGGAAGAAGGCAGTTTGGTTTCCCTGGGCCTGGGAAGCTCCGTCC----CTGGG-TCCCTGTGAGGACAGAGCCCTGGATATTGAAGGACAGAGGCTGGGGAATTGGACCTTTGGGTTTTGAAGAATAGCCCAAGTC------------------TGGTGCTTGGG-----------------ATCCTAGAGACCCAGAGGAGCAGGCTTGGGA----------CTTCAAGAGCTTGGGGGCAAGTTTCT-GGAAAGTTAGGAAGTGGTGGTATCTCTGGGCCCCTGAGAGAGGTAAAGGCTGGACAGTTACACTCTTGG-----------------------TTGTCTGGGTTTCTGCTGGGTGTCAGACT-----------GGG----ACGCGTTAAGGGTT---AGGATACGG
i calJac3.chr22_GL285922_random C 0 C 0
s canFam3.chr1                   20155717 2082 - 122678785 CACCCCCTTGCCAGCTCTGACTCCCCATCCCTGGGGACCTCACTGGG------C----CTCTGTCTGTCTGACTGGCGCTGTCTCTGTGTCCCCAACACTGCACCTGCGTCCCTTACCTGCAGAGGGTCTCCTGACCCTGCGGGCCAAGCCGCCCTCAGAGGCCGAGTACACTGACGTGCTTCAGAAAATCAAGTACGCCTTCAGCCTGCTGGTGAGAATGCGTGGGGTGCGGCCAGCGT-GGGGCGGGGGCGTAGCAAGCCTGACCCGTCTTCCATGCACTCAGTAAGGCCAGCACCTCCCCGGCTCCACAGGCCAGACTGCGTGGAAACATCGCCAACCCTTCCTCCCCAGAGCTGCTGCATTTCCTGTTCGGACCTCTGCAATTGGTGAGCCACCCCTCCCTCAGCCCTCCGGTGGCCCCTGCAGTAGGAGGAATTGAGGTTTGACCT-TGGGGGGCTTGATGGGG-----TGTCCACTCCTGCACCCCTGGCAGATTGTGGACACATCGGGCGGCCCCCGATTTGCAAGTGACGTGCAGCGGCCGCACCTGACGTCTGAGGCGGTGGCACTGCTGCGGGACAACCTCACCCCCCGTGAAAATGCCCTCTGGACCTCGCTGGGGGACTCATGGACCCGCCCGGGGTGAGGGG-----CTGGCAGGCAGGGAAGGGTAGCCACTGG----GCTTAG--------------------------------------------CTAGAGGGTACAACCCCAAGCAATTGAAGAA------------------------------------------------------------GCTAGGGTGACTGCTAGGATGCCACTGGAG---AGACGAGTAGACGGTGTGGAGGAGAGGTT-----------------TCAGACTGGAAAGAAAGGCTGGCCTTAGA-----AA-------AGGGGGTGCAGCCTAGGA-------------------------------AAAGACTGG-CTGTGGATTGGGGAAGGGGGTGGAG---ATACGCTTGCAGGCTGCGAGCCTC-CAGGGATATGAGCAGAGCC--AGACTTAGCAGAAGGAGGCAGGATGGGTGTGGAAAAATC--AGAGGTGATTCAGAGGCTGGACACAGCA--------TT--------AGAGCAAAA---------------------------TCAGTATATT------------------------------------------------------------------------------------------------------TACAAATAT-AGTTGATGTCAGGGTGGAACTTAGAG---------GGGCTTGGCAAAAAGCAGAGAGGCCAG----------AAGCACCTAGCCTAGGGG------CTGGGGAAGTGAAGGTGGTACTGGGGCCTGGGG------CAG-ACTGGCATCCCTGAGCCCTCGGCC----CCTCGGCTGCAGACTGGAGCTGTCCCCCAAGGAGGGACCTCCATACAGCCCTGAGTTCTCCAGCGGCTGGGAGCCCCCTGCCACCGACCCACACGGCCGCGCCTGGGAGGACCCGGTAGAGAAACAGCTACAGCATGAGCGGCAACGCCAGCAGGTGAGGCTAGAGCTTCTCTTCCCCGGGAGGAACAAACTCCTCCCCCAGGTAACACAGTGGGGCTGGGACCAGGAA-------------------------------------------------GTCT--------------------------GGCCCTGCCTGAGCTGCTGCTGCTCTCATCTCCTGCAGCAAAGTGCCCCCCAGGTCGCTGTCAATGGGTGAGTGTCGGGGCCCCA-GGTGGGACAGGTGGGGTCGAGGAGGGGATGCGTCCTGGGGGCTCCTGGCGCTGACTCCACTCCTTTTTTC----TGTCTTTCCTTCTGGCTTCCCGGCTCTTCCCAGGTGGGTGAGGTGGTGACCAGTGAGGGCTgggggctgg-gagaggggggaggggggagggg-ggaggggg-------------------aagggggCAG--------GACCCAGACTTGGGGGTCTGAGGGAGGAA-GGGGCTGGGAGTGGGTAAAGTCTGAGA------------------------GGCTGGGAGAAGGCAGTTTGAGTTCCCATGGCCAGGAAAGCTCCCTGT----GTGGG-TCTTTAAGAGGACAGAGCCCCAGAAGTTAGAGGGAAGAGACTGGGGGCTTGGGCATTTAGGTTTTGAGGTAGAGCTCAAAACCACCTAGGTAACTCTAGGTGGTACTTTGGGGACTTACTGAGTTACCACCTAGGTAACTCTAGGTGGTACTTTGGGGACTTACTGAGCCTTCAAGAGCCAAGGGACAAGTTTCTGGGAAAGTTGGGAAGAGATAGTATTTCTGGGACCCTGAAAGAGGTAACGACTGGG-GGCTGGACCCTTACTATCCCA-AGGCTCTAAAGCAAACTATCTCAATTCCTGCTGAGTGTGATACTGATAGCCTTCAGAGATTAAAGGTTTGGGAAATGATGGCTTGAGA
i canFam3.chr1                  C 0 N 0

a score=30456.000000
s hg38.chr19_GL949751v2_alt       1002674 9 +   1002683 TTGAAGCTT
s panTro4.chr19                  59996975 9 +  63644993 TTGAAGCTT
i panTro4.chr19                 C 0 N 0
s ponAbe2.chr19                  56952211 9 +  60714840 TTGAAGCTT
i ponAbe2.chr19                 C 0 N 0
s nomLeu3.chr10                 103420606 9 - 106955855 TTGAAGCTT
i nomLeu3.chr10                 C 0 N 0
s rheMac3.chr19                  60730349 9 +  64156825 TTGAAGCTT
i rheMac3.chr19                 C 0 N 0
s macFas5.chr19                  55888236 9 +  59248254 TTGAAGCTT
i macFas5.chr19                 C 0 N 0
s papAnu2.chr19                  47976746 9 +  51301725 TTGAAGCTT
i papAnu2.chr19                 C 0 N 0
s chlSab2.chr6                   47676174 9 +  50890351 TTGAAGCTT
i chlSab2.chr6                  C 0 N 0
s calJac3.chr22_GL285922_random     84735 9 +    138250 TTGAAGCTT
i calJac3.chr22_GL285922_random C 0 N 0

