##maf version=1 scoring=roast.v3.3
a score=884.000000
s hg38.chr1_KI270711v1_random          0 4 +  42210 tgtg
s panTro4.chr1_GL389150_random     73564 4 + 113811 tgtg
i panTro4.chr1_GL389150_random    N 0 C 0
s nomLeu3.chr24_GL397604_1_random 252793 4 + 297174 tgta
i nomLeu3.chr24_GL397604_1_random N 0 C 0

a score=2851.000000
s hg38.chr1_KI270711v1_random           4 6 +   42210 tatgtg
s panTro4.chr1_GL389150_random      73568 6 +  113811 tatgtg
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random  252797 6 +  297174 tatgta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random 1003139 6 - 1280666 tatgta
i chlSab2.chr20_KE148050v1_random N 0 C 0

a score=9069.000000
s hg38.chr1_KI270711v1_random          10 12 +   42210 tatgtgtatgta
s panTro4.chr1_GL389150_random      73574 12 +  113811 tatgtgtatgtg
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random  252803 12 +  297174 tatgtataggta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random 1003145 12 - 1280666 tatgtatatgta
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                  651 12 -   28529 tatgtatatgta
i rhiRox1.KN298638v1              N 0 C 0

a score=103960.000000
s hg38.chr1_KI270711v1_random            22 100 +     42210 tgtgtatgtgtatgtgtatatgtatatgtatatgtaGTCCTCAGGTTGTATTCCTTAAATATATATAATATATGTAATTCCTTAAATATATAATTTTAAT
s panTro4.chr1_GL389150_random        73586 100 +    113811 tatgtatgtgtatgtgtatgtgtatatgtatatgtaGTGCTCAGGTTGTATTCCttaaatatatataatatatgtaattccttaaatatataattttaat
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    252815  73 +    297174 tgtgtatatgtataggtatgtgtatatgtataCGTAGTCCTCAGATTGT---------------------------ATTCCTTAAATATATAATTTTAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211807424  95 + 227556264 tatgtatatgtatatgtatatgtatatgtatatgtaGTCCTCAGGTTGTATTCCTTAAATAT-----ATACATGTAATTCCTTAAATATATAATTTTAAC
i macFas5.chr1                    N 0 C 0
s chlSab2.chr20_KE148050v1_random   1003157 100 -   1280666 tatgtatatgtatatgtatatgtatatgtatatgtaGTCCTCAGGTTGTATTCCTtaaatatatataatatatataattccttaaatatataATTTTAGT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                    663  95 -     28529 tatgtatatgtatatgtatatgtatatgtatatgtaGTCCTCAGGTTGTATTCCTTAAATAT-----ATATATGTAATTCCTTAAATATATAATTTTAAT
i rhiRox1.KN298638v1              C 0 C 0

a score=82866.000000
s hg38.chr1_KI270711v1_random           122 46 +     42210 ACAAAATTTTTAAAAGATTCCTTTCATAAACATTTACAATAACACC
s panTro4.chr1_GL389150_random        73686 46 +    113811 acaaaatttttaaaaGATTCCTTTCATAAACATTTACAATAACACC
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107342442 46 + 229942017 ACAAAGTTTTTAAAAGATTCCTTTAATAAACATTTACAATAACATC
i ponAbe2.chr1                    N 0 C 0
s nomLeu3.chr24_GL397604_1_random    252888 46 +    297174 ACAAAATTTTAAAAAGATTCCTTTAATAAACATTTACAATAACATC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211807519 46 + 227556264 ACAAAATTTTTAAAAGATTCCTTTAATAAACATTTACAATAACATC
i macFas5.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003257 46 -   1280666 ACAAAATTTTTAAAAGATTCCTTTAATAAACATATACAATAACATC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s rhiRox1.KN298638v1                    758 46 -     28529 ACAAAATTTTTAAAAGATTCCTTTAATAAACATTTACAATAACATC
i rhiRox1.KN298638v1              C 0 N 0

a score=117878.000000
s hg38.chr1_KI270711v1_random           168 106 +     42210 AAGAAATATAAACTACATAGC-----------------------------------------------------------AAAGATGTGAAAGCCAGCCAGGCGCAGCTTCAaatcctagcgcttaggaaggctgtggcaggagggtcgcttgagctcagaagct
s panTro4.chr1_GL389150_random        73732 106 +    113811 AAGAAATATAAACTACATAGC-----------------------------------------------------------AAAGATGTGAAAGCCAGCCAggctcagcttcaaatcctagcgcttaggaaggccgtggcaggagggtcacttgagctcagaagct
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107342488 163 + 229942017 AAGAAATATAAACGACATAGCAAACATGTGAAAGCCAGCCAGG--CTCTCAATGGCATCAAGAAATATAAACTACATAGAAAAGATGTGAAAGCCAGCCAGGCTTGGCTTCAaatcccagcactttggaaggctgtggcaggagagttgcttgagctcagaagct
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    252934 163 +    297174 AAGAAATATAAACTATGTAGCAAAGATCTGAAAGCCAGCCAGGCTCTC--AATAGCATCAAGAAATATAAACTACATAGGAAAGATGTGAAAGCCAGCCAGGCTTGGCTTCAaatctcagcactttggaaggctgtggcaggaggttcgcttgagctcagaagct
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211807565 106 + 227556264 AAGAAACATAAACTACAt-----------------------------------------------------------agaaaagatgtgaaaaccagccaggctcggcctcaaatgccagcactttggaaggctgtggcaggagggtcgcttgagctcagAGGCT
i macFas5.chr1                    C 0 I 3768
s chlSab2.chr20_KE148050v1_random   1003303 163 -   1280666 AAGAAGTATCAACTACATAGCAAAGATGTGAAAGTCAGCCAGGCTCGC--AATAGCATCAAGAAATATAAACTACATAGAAAAGATGTGAAAGCCAGCCAGGTTCGGCTTCAaatgccagcactttggaaggctgtggcaggagggtcgcttgagctcagaggct
i chlSab2.chr20_KE148050v1_random C 0 C 0

a score=594059.000000
s hg38.chr1_KI270711v1_random           274 723 +     42210  
s panTro4.chr1_GL389150_random        73838 720 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107342651 716 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    253097 716 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1003466 722 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=7940.000000
s hg38.chr1_KI270711v1_random           997 6 +     42210 gtgtgt
s panTro4.chr1_GL389150_random        74558 6 +    113811 gtgtgt
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104469563 6 - 229507203 gtgtgt
i gorGor3.chr1                    N 0 I 1254
s ponAbe2.chr1                    107343367 6 + 229942017 gtgtgt
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    253813 6 +    297174 gtgtgt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004188 6 -   1280666 atgtgt
i chlSab2.chr20_KE148050v1_random C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=7226.000000
s hg38.chr1_KI270711v1_random          1003 20 +     42210 ------gtgtgtgtgtgtgtgtgtgt
s panTro4.chr1_GL389150_random        74564 14 +    113811 ------gtgtgtgtgtgtgt------
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107343373 14 + 229942017 ------gtgtgtgtgtgtgt------
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    253819 12 +    297174 --------gtgtgtgtgtct------
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004194 20 -   1280666 gtttgtgtgtgtgtgtgtgt------
i chlSab2.chr20_KE148050v1_random C 0 I 99
e gorGor3.chr1                    104469569 1254 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=62913.000000
s hg38.chr1_KI270711v1_random          1023 127 +     42210 gtgtgtctggtgtctgtgtgcatgtatgtgtgtttgcctttgtatgtattgtttgggattttctatgcataggatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
s panTro4.chr1_GL389150_random        74578 121 +    113811 ------ctggtgtctgtgtgcatgtatgtgtgtttgcctttgtatgtattatttgggattttctatacataggatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107343387 121 + 229942017 ------ctggtctctgtgtgcatctatgtgtgtTTACAtttgtatgtattatttgggattttctatgcataggatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatacttttt
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    253831 121 +    297174 ------gtggtctctgtgtgcatgtatgtgtgtttgCAtttgtatgtattatttgggattttctatacataggatcacaccatctgcaaattgagatcattttgttttctgttcaaaaatatttttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e gorGor3.chr1                    104469569 1254 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1004214  99 -   1280666 I

a score=889446.000000
s hg38.chr1_KI270711v1_random          1150 1118 +     42210  
s panTro4.chr1_GL389150_random        74699 1118 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107343508 1105 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    253952 1113 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1004313 1106 -   1280666  
i chlSab2.chr20_KE148050v1_random I 99 C 0
e gorGor3.chr1                    104469569 1254 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=4660.000000
s hg38.chr1_KI270711v1_random          2268 4 +     42210 AGGT
s panTro4.chr1_GL389150_random        75817 4 +    113811 AGGT
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104470823 4 - 229507203 AGGT
i gorGor3.chr1                    I 1254 I 1159
s ponAbe2.chr1                    107344613 4 + 229942017 AGGT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    255065 4 +    297174 AGGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005419 4 -   1280666 AGGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=424984.000000
s hg38.chr1_KI270711v1_random          2272 521 +     42210  
s panTro4.chr1_GL389150_random        75821 520 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107344617 519 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    255069 524 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005423 518 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104470827 1159 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=1365.000000
s hg38.chr1_KI270711v1_random          2793 1 +     42210 a
s panTro4.chr1_GL389150_random        76341 1 +    113811 a
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107345136 1 + 229942017 a
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    255593 1 +    297174 a
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005941 1 -   1280666 a
i chlSab2.chr20_KE148050v1_random C 0 C 0
s saiBol1.JH378394                    40786 1 -     81674 a
i saiBol1.JH378394                N 0 N 0
e gorGor3.chr1                    104470827 1159 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=476669.000000
s hg38.chr1_KI270711v1_random          2794 578 +     42210  
s panTro4.chr1_GL389150_random        76342 577 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107345137 575 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    255594 584 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s chlSab2.chr20_KE148050v1_random   1005942 580 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104470827 1159 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=52988.000000
s hg38.chr1_KI270711v1_random          3372 46 +     42210 CCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCCATAACCCTG
s panTro4.chr1_GL389150_random        76919 46 +    113811 CCCTAGGGGTTAACTTAGAGAGTCAAAAATCCCACCTATAACCCTG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107345712 46 + 229942017 CCCTAGGGGTTAACTTAGAGACTCAAAAATCTCACCCATAATCCTG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256178 46 +    297174 CCCTAGGGGTTAACTTAGAGAGTCAAAAATTCCACCCATAATCCTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s papAnu2.chr1                    201371840 41 - 220367699 CCCTAGGGG-----TTAGAGAGTCAAAACTCCCACCCGTAACCCTG
i papAnu2.chr1                    N 0 C 0
s chlSab2.chr20_KE148050v1_random   1006522 46 -   1280666 CCCTAGGGGTTATCTTAGAGAATCAAAAATCTCACCCATAATCCTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104470827 1159 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=750.000000
s hg38.chr1_KI270711v1_random          3418 1 +     42210 C
s panTro4.chr1_GL389150_random        76965 1 +    113811 C
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104471986 1 - 229507203 C
i gorGor3.chr1                    I 1159 I 469
s ponAbe2.chr1                    107345758 1 + 229942017 C
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256224 1 +    297174 C
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s papAnu2.chr1                    201371881 1 - 220367699 G
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1006568 1 -   1280666 C
i chlSab2.chr20_KE148050v1_random C 0 C 0
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=558260.000000
s hg38.chr1_KI270711v1_random          3419 465 +     42210 CCCTAAACGCCAGGACTAGGGAACACTGTGGCCCTCAGGTGATTTTGTTTCACTTGGTCTGGGAGCCACACAAGGGCAGAGGGAGCAGGAAACACTAAGCAAATCGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGACAGAACACAGGTAAAACTATCCTCAGAAAGAGCATGTGGAGAAACATAGATCATGCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaaggggcttcaccatgcagaggaccagaggtgccagtcttggaaacgcagaattgctgggagatggggaggcatggacaaaggaagcatcctctggagactcatggtgaagagaaca----aatgaagtaactggcagaaattataggtcctggtagaacaaaatagaatcccacaatgagaacatacagcATGTATGTCCCgcaaggaagacaatagctcctaaaaat
s panTro4.chr1_GL389150_random        76966 465 +    113811 CCCTAAATACCAGGGCTAGGGAACACTGTGGCCCTCAGGTGATTTTCTTTCACTGGGTCTGGGAGCCACACAAGGGCAGAGGGAGCAGGAAACACTATGCAAATCGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGACAGAACACAGGTAAAACTATCCTCAGAAAGAGCATTTGGAGAAACACAGATCATGCCTGAGAcctggtggattagggcactggctactggggaattgaaaggaaagggcttcaccatgcagaggaccagaggtgccagtcttggaaacgcagaattgctgggagatggggaggcatggacaaaggaagcatcctctggagactcatggtgaagagaaca----aatgaagtaactggcagaaattataggtcctggtagaacaaaatagaatcccacaacgagaacatacaCCATGTATGTCCCacaaggaagacaatagctcctaaaaat
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107345759 468 + 229942017 CCCTAAACACTAGGGCTAGGGAACAATGTGGCCCTCAGATGATTTTCTTTAGCCGGGTCTGGGAGCCACACGAAGGCAGAGGGAGCAGGAAACACTATGCAAATAGAGGCCAGGACAGCAGGGAGG------GCC--TGTTCATGATAGAACCCAGGTAAAACTATCCTCAGAAAGTGAGTGTGGAGAAACATAGATCATCCCTGAGAcctggtggattagagcactggctactggggaattgaaaggaa-gggcttcaccatgcagaggaccagaggtgccaatcttggaaatgcagaactgctgggagatggggaggcgtggaccatggaagtatcctctggagactcgtggtgaagagaacaaatgaatgaagtaactggcagaaattagaggtcctggtagaacaaaatagaatcccacaatgagaacaaacaCCATGTATGTCCCCcaaggaagacaatatctcctaaaaac
i ponAbe2.chr1                    C 0 I 1
s nomLeu3.chr24_GL397604_1_random    256225 476 +    297174 CCCTACACACCAGGGCTAGGAAACATTGTGGCCCTCAGGTGATTTTATTTAGCCGGGTGTGGGAGACACACGACAGCAGAGGGAGCAGGAAACACTATGCAAATAGAGGCCAGGACAGCAGGGAGACATTTTACCTGTGTTAATGACAGAACACAGGTAAAACTATCCACAG-AAGCAAGTGTGGAGAAACACAGATCATGCCTGAGACCTGGTGGATTAGAGCACTGGCTACTGGGGAATTGAAAGGAAAGAGCTTCACCATGCAGAGGACAAGAATTGCCAGTCTTGGAAACGCAGAATTCCTGGGAGATGGGGAGGCGTGGACCATGGAAGTATCCTCTGGAGACTCGTGGTGAAGAGAACAAATGAATGAAGTAACTGGCAGAAATTAGAGTTCCTGGTAGAACAAAATAGAATCCTGCGATGAGAACATACACCATATATGTCCCCcaaggaagacaatatctcctaaaaac
i nomLeu3.chr24_GL397604_1_random C 0 I 1
s papAnu2.chr1                    201371882 467 - 220367699 CCCTAAACACCTGGGCTAGGGAACACTGTGGCCCTCAGGAGATTGTCTTTAGCTGGGTCTGAGAGCCACACAACTGCAGAGGGAGCAGGAGACACTATGCAAATCGAGGCCAGAACAGCAGGGCGG------GCC--TGTTCATGACAGAACACAGGTAAAACTACCCTCAGAAAGAGCGTGTGGAGAA--ACAGATCATGCCTGACACCTGGTGGATTAGAGCACTGGCTACTGGGGAATTGAAAGGAAGGGGCCTCACCGTGCAGAGGACCAGAGGTGCCAATCTTGGAAACGCAGAATTGCTGGGAGATGGGGAGGCAGGAACAGAGGAAGCATCCTCTGGAGACTCGTGGTGAAGAGAACACATGAACGAAGTCACTGGCAGAAATTAGAGGTCCTGGTAGAACAAAATTGAATCCCACAATGAGAACATACACCGTGTATGTCCCCCAGGGAAGACAGTATCTCctaaaaac
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1006569 469 -   1280666 CCCTAAACACCAGGGCTAGGGAACACCGTGGTCCTCAGGTGATTTTATTTAGCAGGGTCTGGGAGCCACACCACAGCAGAGGGAGCAGGAAACACTATGCAAATAAAGGCCAGGACAGCAGGCAGG------GGC--TGTTCATGACAGAACACAGGTAAAACTACCCTCGGAAAGTGAGTGTGGAGAAACACAGATCGTGCCTGAGACCTGGTGGATTAGAGCACTGGCTACTGGGGAATTGAAAGGAAGGGGCTTCACCATGCAGAGGACCAGAGGTGCCAATCTTGGAAACGCAGAATTGCTGGGAGATGGGGAGGCATGGACAAAAGAAGCATCCTCTGGAGACTCGTGCTGAAGAGAACAAATGAATGGAGTAACTGGCAGAAATTAGAGGTCCTGGTAGAACAAAATAGAATCCCACAATGAGAACACACACCATGTATGTCCCCCAAGGAAGACAATATCTCCTAAAAAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104471987 469 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=-2491.000000
s hg38.chr1_KI270711v1_random          3884 1 +     42210 -g
s panTro4.chr1_GL389150_random        77431 1 +    113811 -g
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104472456 1 - 229507203 -g
i gorGor3.chr1                    I 469 I 62085
s papAnu2.chr1                    201372349 1 - 220367699 t-
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007038 1 -   1280666 c-
i chlSab2.chr20_KE148050v1_random C 0 C 0
e ponAbe2.chr1                    107346227 1 + 229942017 I
e macFas5.chr1                    211807671 3768 + 227556264 I
e nomLeu3.chr24_GL397604_1_random    256701 1 +    297174 I

a score=262933.000000
s hg38.chr1_KI270711v1_random          3885 228 +     42210 caagaaaaatcattttgggcaaacaccttatatccagtaatgcgatccatgtatcaagaccacgag-gaagattattaaacatgctaaactcagcgagacctgattccctcatgaggactctgttaaggatgagtaccactcagcaagtgatgactgtgacattcacttttgaacagctcatgagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgt
s panTro4.chr1_GL389150_random        77432 227 +    113811 caagaaaaatcattttgggcaaacaccttatatccagtaatgcgatccatgtatcaagaccatgag-gaagactattaaacatgctaaactcagcgagacctgattccctcatgaggactctgtta-ggatgagtaccactcagcaagtgatgactgtgacattcacttttgaacagctcatgagcattaatatatttaattgtggatctaaaccaaaaacccaggtgt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107346228 229 + 229942017 caagaaaaatcattttgggcaagcaccttatatccagtaatgcaatccatgtatcaagaccttgagaaaagattattaaatgtgctaaactcagcgagacctgattccctcatgaggactctgttaaggatgagtaccactcagcaagtgatgaccgtgacattcacttttgaatagctcatgagaattaatatatttcactgtggatctaaaccaaaaaccaaggtgg
i ponAbe2.chr1                    I 1 C 0
s nomLeu3.chr24_GL397604_1_random    256702 229 +    297174 caagaaaaatcattttgggcaagcaccttatatccagtaatgtgatccatgttttaagaccgtgagaaaagattattaaacatgctaaactcagtgagacccaattccctcaggaggactctgttaaggatgagtaccactcagcaagagatgactgtaacattcacttttgaatagctcatgagcattaatatatttaattgaggatctaaaccaaaaacaaacgtgg
i nomLeu3.chr24_GL397604_1_random I 1 C 0
s papAnu2.chr1                    201372350 225 - 220367699 caagaaaaatcattttgggCGAGTACCTTATATCCAGTCATGGGATCCATG---CAAGACCATGAGAAAAGATTATTAAACATGCTAAGCTCAGCGAGACCTGATTCCCTCAGGAGGACTCTGTTAAGGATGAGTACCACTCAGCAAGTGATGACTGTGACATTCGCTTTTGAATAGCTCATGagcattaatatatttaattgtgGATCT-AACCAAAAACCAAGGTGG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007039 210 -   1280666 ca-------------------agcacctcatatccagtaatgcgatccatgtatcaagatcatgagagaagattattaaacatgctaaactcagcaagacctgattcgctcataaggactctgttaaggattagtaccactcagcaagtgatgactgtgacattcacttttgaatagctcataagcattaatatatttaattgtggatctaaaccaaaaaccaaggtgg
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104472457 62085 - 229507203 I
e macFas5.chr1                    211807671 3768 + 227556264 I

a score=87911.000000
s hg38.chr1_KI270711v1_random          4113 59 +     42210 gggcaagatgacaaccacagaatgtcactggcatatgtttaggttcaaata----------------------------ccattatg
s panTro4.chr1_GL389150_random        77659 59 +    113811 gggcaagatgacaaccacagaatgtcactggtatatgtttaggttcaaata----------------------------ccattatg
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107346457 87 + 229942017 gggcaagatgataatcacagaatgtcactggtatatgtttaggttcaaatatgagaagtggttcaaatatgtttaggttcaaaaatg
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256931 59 +    297174 ggacaagatgacaatcacagaatgtcactggtatatgtttaggttcaaata----------------------------ctgttatg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211811439 59 + 227556264 ggacaagatgacagtcacagaatgtcactggtatatgtttaggttcaaata----------------------------ctattatg
i macFas5.chr1                    I 3768 C 0
s papAnu2.chr1                    201372575 59 - 220367699 GGCCAAGATGAAAATCACAGGATGTCACTGGTGTATGTTCAGGTTCAAATA----------------------------CTATTATG
i papAnu2.chr1                    C 0 I 153
s chlSab2.chr20_KE148050v1_random   1007249 59 -   1280666 acgcaagctggcaatcacattatgtcactggtatatgtttaggttcaaata----------------------------ccattatg
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=510357.000000
s hg38.chr1_KI270711v1_random          4172 327 +     42210 agaagtggcaggtaaaggaggtaggaaaaagaaaacacatcatgtaactgactgtcatatggaaatatttgacgttgaaagtcataatttaaaatgtataaaccaaatattagaagTGTGTCTAGTTCAAAGGGGGGAAAACTAT--GAAACATTTTTAAT-CAATATCAAACATGAGCTACACAACCCTTCCTAAATGCCA---------GAGGcacacacag----acacacacacacacac------------tctcacaAAGAATATAAATATCTAGAACCAAGAAATGGAGTAAATGCATTCTGCTACATATGGTAAACATAGCCT--ACAAGGTGGAAGAGATTAGAAAAT
s panTro4.chr1_GL389150_random        77718 335 +    113811 agaagtggcaggtaaaggaggtaggaaaaagaaaacacatcatgtaactgactgtcatatggaaatatttgatgttgaaagtcataatttaaagtgtataaaccaaatattagaagTGTGTCTAGTTCAAAGGGGGGAAAACTAT--GAAACATTTTTAGT-CAATATCAAACATGAGCTACACAACCCTTCCTAAATGGCA---------GAGGcacacacag----acacacacacacacac----acacacacTCTCACAAAGAATATAAATATCTAGAACCAAGAAATGGAGTAAATGCATTCTGCTACATATGGTAAACATAGCCT--ACAAGGTGGAAGAGATTAGAAAAT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107346544 340 + 229942017 agaagtggcaggtaaagaaggtaggaaaaagaaaacacatcatgtaattgactgtcgtatggaaatatttgaggctaaaagttataatttaaaac-tataaaccaaatattagaagtgtgtctagttcaaagggaggaaaactatcaaaaacatttttagt----------gcatgagctatacaacccttcctaaatgccaaatgcacacaagacacacacac----acacacacacacacacatacacacacacactcacgaagaatacaaatgactagaaccaagaaatgtagtaaatacattctgctacatatGGTAAACATAGCCT--ACAATGTGGAAGAGATTAGAAAAT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    256990 327 +    297174 agaagtggcaggttgagaaggtaggaaaaagaaaacacattatgtaactgactgtcatatggaaatatttgacgctgaaagttataatttaaaatgtataaaccaaatattagaagtatgtctagttcaaagggggg-gaactatcagaaacatttttagtgcaatattaaacatgagctctacaacccttcctaaatgcca---------aaggcacacacag----ccacacacacacacac--------------tcacaAAGAATACAAATAATTGGAACCAAGAAAAGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCT--ACAATGTGGAAGAGATTAGAAAAT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211811498 336 + 227556264 agaagtggcaggtaaagaaggtagaaaaaaaaaaccacatcatgtaattgactgttgtatggaaatatttgacattgaaagttataatttaaaacatataaactaaatattagaagtgtgtctagttcaaaggggggaaaactaccaaaaacatttttagtgcaatattaaccatgagctatacaacccttcctaaatgcca---------aaggcacacacagacctacacacacacacactc----------acactcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCT--ACCATGTGGAAGAGATTAGAAAAT
i macFas5.chr1                    C 0 I 318
s papAnu2.chr1                    201372787 332 - 220367699 agaagtggcagGTAAGGGAGGTAGAAAAAAGATAACGCAT-ATGTAATTTGCTGTCTTATGGAAATCTTTGAGGTTGAAagtcataatttaaaacatataaaacaaatattagaagTATGTCTAGTTCAAAGGGGGGAAAactatcaaaaacatttttagtgcAATATTAAACAGGAGCTATGCAACCCTTCCTAAATGGCa---------aaggcacacacag----acacacacacacacac----------acactcacaaagaata-aaataattagaatcaaGAAATGTAGTAAATATATTCTGCTACATATGATAAACATAGTCTAGATTTTTTGGAAgagattagaaaat
i papAnu2.chr1                    I 153 C 0
s chlSab2.chr20_KE148050v1_random   1007308 328 -   1280666 agaagtggcaggtaaagcaggtaggaaaaagaaaacacgacatgtaattgactgtcatatggaaatatttgacattgaaagttataatttaaaacatataaaccaaatattagaagtgtgtctagttcaaaggggggaaaactatcaaaaacatttttagtgtaatattaatcatgagctatacaacccttcctaaatgcca---------aaggcacacacag--------acacacacacac----------aaactcacaAAGAATACAAATAACTAGAACCAAGAAATGTAGTAAATACATTCTGCTACATATGGTAAACATAGCCT--ACGACGTGGAATAGATTAGAAAAT
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=318476.000000
s hg38.chr1_KI270711v1_random          4499 199 +     42210 AAACAGGGAAATGGAAATGTTTTTATTAATTCACATCAGTACCCACCAAAACCA---ATCAGCATAACAAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGATAGGCAAAAGCTTTTAATTGTATAGATTAAAA-TAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA-----TGTTTTTTTTTT---CAACAA
s panTro4.chr1_GL389150_random        78053 200 +    113811 AAACAGGGAAATGAAAATGTTTTTATTAATTCGCATCAGTACCCACCAAAACCA---ATCAGCATAACAAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGATAGGCAAAAGTTTTTAATTGTATAGATTAAAA-TAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA-----TGTTTTTTTTTTT--CAACAA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107346884 205 + 229942017 AAACAGGGAAATG-AAATGTTTTTATTAATTCGCATCAGTACCCACCAAAACCAATCATCAGCATAATCAAAGATTATAACACTGAATGTAAAAAACAATCCAACAGTCCAGAGTGATAGGCAAAAGTTTTTAATTGTATAGATTAAAATTAACTTTGGACAAAAACTAAAACTCAGGCAGAGAA-----TTTTTTTTTTTTTTGCAACAA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    257317 197 +    297174 AAACAGGGAAATGAAAATGTTTTTATTAATTCGCATCAGTACCCATGAAAAACA---ATCAGCATAATAAAAGATTATAACACTGAATGTAAAAAACAATCCAGCAGTCCAGAGTGATAGGCAAAAGTTTTTAATTGTATAAATTAAAATTGACTTTGGACAAAAGTTAAAACTCAGGCAGAGAA-----CTTTTTTTT------CAACAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211812152 197 + 227556264 aaaCAGGGAAATGAAAATATTTTTATTAATTCGCATTAGTACCCATGAATACCA---ATCAGCATAATGAAAGATTCCAACACTGAATG-AAAAAACGGTCCAACAGTCCAGAGTGACAGGCAAAAGATTTTAATTATATAGATAAAAATTAACTTTGGACAAAAATTAAAACTCAGGCAGAGAA----CTTTTTTTTT------CAACAA
i macFas5.chr1                    I 318 C 0
s papAnu2.chr1                    201373119 201 - 220367699 aaacagggaaatgaaaatatttttattaatttgtatcagaacccaccaaaacca---atcagcataataaaagattctaacactgaatgtaaaaaACAATCCAACAGTCCAGAGCGATaggcaaaagtttttaattgtaTACGTTAAAA-TAACTTTggacaaaaattaaaactcaggcagagaatggttttttttttt------caacag
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1007636 197 -   1280666 AAACAGGAAAATGAAAATGTTTTTATTAATTCCCATCGGTACCCATGAAAACCA---ATCAGCATAATAAAAGATTCCAACACTGAATGTAAAAAACAGTCCAACAGTCCAGAGCGATAGGCAAAAGTTTTTAATTGTATAGATTAAAATTAACTCTGGACAAAAATTAAAACTCAGGCAGAGAA-----TTTTTTTTT------CAACAA
i chlSab2.chr20_KE148050v1_random C 0 C 0
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=3577.000000
s hg38.chr1_KI270711v1_random           4698 2 +     42210 CA
s panTro4.chr1_GL389150_random         78253 2 +    113811 CA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347089 2 + 229942017 CA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     257514 2 +    297174 CA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211812349 2 + 227556264 CA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201373320 2 - 220367699 ca
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1007833 2 -   1280666 CA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     31778 2 +    256308 TG
i tupBel1.scaffold_109258.1-256308 N 0 I 653
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=97539.000000
s hg38.chr1_KI270711v1_random           4700 59 +     42210 CACACTAGCAAAAACAAAGGCACAGTAAACATTGAGGCAGAAAGTTTCCAGCGTAGAGA
s panTro4.chr1_GL389150_random         78255 59 +    113811 CACACTAGCAAAAACAAAGGCACAGTAAACATTGAGGCAGAAAGTTTCCAGCGTAGAGA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347091 59 + 229942017 GACACTAGCAAAAACAAAAGCACAGTAAAAATTGAGACAGAAAATTTCCAGTGTAGAGA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     257516 59 +    297174 GACACCAGCAAAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAGTGTAGAGA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211812351 59 + 227556264 GACACTAGCAAAAACAAAGGCACAGTAAAAATTGACACAGAAAATTTCCAGTGTAGGAA
i macFas5.chr1                     C 0 M 625
s papAnu2.chr1                     201373322 59 - 220367699 gACACTAGCCAAAACAGAGGCAGAGTaaaaattgagacagaaaatttccAGTGTAGAGA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1007835 59 -   1280666 GAAACCAGCAAAAACAAAGGCACAGTAAAAATTGAGACAGAAAATTTCCAAGGTAGAGA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     31780 653 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=784804.000000
s hg38.chr1_KI270711v1_random           4759 623 +     42210  
s panTro4.chr1_GL389150_random         78314 620 +    113811  
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347150 619 + 229942017  
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     257575 625 +    297174  
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201373381 620 - 220367699  
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1007894 623 -   1280666  
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     31780 653 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211812410 625 + 227556264 M

a score=70980.000000
s hg38.chr1_KI270711v1_random           5382 38 +     42210 TTTCTGCAAGAACATGGCGTTGTTCATATTCTGCACCG
s panTro4.chr1_GL389150_random         78934 38 +    113811 TTTCTGCAAGAACATGGCATTGTTCATATTCTGCACTG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347769 38 + 229942017 tttctgcaagaacaTGGCATTGTTCATATTCTGCACTG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258200 38 +    297174 TTTCTGCAAGAACATGGCATTGTTCACATTCTGCACTG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211813060 38 + 227556264 TTTCTGCAAGAACATGGCATTGTTCATATTCTGCACtg
i macFas5.chr1                     M 625 I 1323
s papAnu2.chr1                     201374001 38 - 220367699 TTTCTGCAAGAACATGGCATTGTTCATATTCTGCACCG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1008517 38 -   1280666 TTTCTGCAAGAACATGGCATTGTTCATATTTTGTACCG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     31780 653 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=13639.000000
s hg38.chr1_KI270711v1_random           5420 12 +     42210 GCAGAGTCCTGG
s panTro4.chr1_GL389150_random         78972 12 +    113811 GCCGAGTCCTGG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347807 12 + 229942017 GCAGAGTCCCGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258238 12 +    297174 GCAGATTCCCAG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201374039 12 - 220367699 GCAGAGTCCCGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1008555 12 -   1280666 GCAGAGTCCTGG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     31780 653 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211813098 1323 + 227556264 I

a score=651.000000
s hg38.chr1_KI270711v1_random           5432 2 +     42210 GT-
s panTro4.chr1_GL389150_random         78984 2 +    113811 GT-
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347819 2 + 229942017 GT-
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258250 2 +    297174 GT-
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201374051 2 - 220367699 GT-
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1008567 2 -   1280666 GT-
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     32433 2 +    256308 -TT
i tupBel1.scaffold_109258.1-256308 I 653 I 44676
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211813098 1323 + 227556264 I

a score=228634.000000
s hg38.chr1_KI270711v1_random           5434 182 +     42210 GACATGCTGTCTCCTGCCAGCGGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATCGAGAGGAGCAGGGCTAAGGCCTCCCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTACTGACACCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGCGGGTTAACA
s panTro4.chr1_GL389150_random         78986 182 +    113811 GACATGCTGTCTCCTGCCAGCGGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATCGAGAGGAGCAGGGCTAAGGCCTCCCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTACTGACACCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGCGGGTTAACA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107347821 182 + 229942017 GACATGCTGTCTCCTGCCAGCAGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATTGAGAGGAGCAGGGCTAAGGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTATTGATACCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGTGGGTTAACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258252 183 +    297174 GACATGCTGTCTCCTGCCATTGGCTCCTGACTCCTGTTCTCTACAGGATAGGAATTGAGAAGAGCATGGCTACAGCCTCTCAATGCTGTTTGTCCATCTAGCTGTGGTCTTCCTAAGTATTGATATCAATTGGAGGCTGAAGGACTGTAGCTTCTCTCATCAAAGCAGCCTAGTGGGTTAACA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201374053 182 - 220367699 GACATGCTGTCTCCTGCCAGCGGCTCCTGGCTCCTGTTCTTTACAGGAT-GGAATTGAGAGGAGCCAGGCTAAGGGCTGTCCACGCTGTTTGTCCATCTAGCTGTGGTCTTCCGAAGTATTCATAGCAATTGGAGGCTGAAGGACTGTGGCTTCTCTAACCAAAGGAGCCTAGTGGGTTAACA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1008569 182 -   1280666 GACATGCTGTCTCCTGCCAGCAGCTCCTGACTCCTGTTCTCTACAGGAT-GGAATTGAGAGGGGCAGGGCTGAGGCCTCTCAATGCTGTTTATCCATCTAGCTGTGGTCTTCCTAAGTATCAATGTCAACTGGAGGCTGAAGGACTGTGGCTTCTCCAACCAAAGGAGCCTAGTGGGTTAACA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     32435 44676 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211813098 1323 + 227556264 I

a score=692352.000000
s hg38.chr1_KI270711v1_random           5616 401 +     42210 ATTGTCAAGAGCAGTTGGTGGTTCTGAAATACAATCCTCAGCCAAGGATCCCTCCTGTGTTAAAGATGGATCAGCTAAAACAATTCAACACTGAAGATACAAAGAAT--GAGGTTAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGACTGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATAAGTGG--------TTCAAATTAAAATGTCTGACTGATCACTCCCGGCATGTGCTGCACAGTTATGTGAACGTGTCACACCTAACTTGGGTCCATTGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCACTG
s panTro4.chr1_GL389150_random         79168 401 +    113811 ATTGTCAAGAGCAGTTGGTGGTTCTGAAATACAATCCTCAGCCAAGGATCCCTCCTGTGTTACAGATGGATCAGCTAAAACAATTCAACACTGAAGATACAAAGAAT--GAGGTTAGGTTCATTGAAACCAGGGTAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGCCTGCAAAATGAAACCCCTGAGGAACTTTGTAGCTACCCAGAGATACGTGG--------TTCAAATTAAAATGTCTGACTGATCACTCCCGGCACGTGCTGCACAGTTATGTGAACGTGTCACACCTAACTTGGGTCCATTGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCACTG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348003 401 + 229942017 ATTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGATCCCTCCTGTGTTACAGATGGATCAGCTAAAACAAGTCAACACTGAAGATATAAAGAAT--GAGGTTAGGTTCATTGAAACCAGGGTAACACCTTCAGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGCTCAGAGACATGCTTGCAAAATGAAATCCCTGAGGAATTTTGTAGCTACCCAGAGATACGTGG--------TTCAAATTAGAATGTCTGACAGATCACTCCCGGCATGTGCTGCATAGTTATGTGAACGTGTCACACCTAACTTGGGTCCAATGTCTTCAGACTGAGCACAAGTTGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCACTG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258435 401 +    297174 ATTGTCAAGAGCAGTCAGTGGTTCTGAAATATAATCCTCAGCCAAGGATCCCTCCTGTGTTACAGAAGGATCAGCTAAAACAAACCAACACTGAAGATACAAAGAAT--GGGGTTAGGTTCACTGAAACTAGGGTAACATCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTATAGAAGGTCAGAGACATGCCTGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATATATGG--------TTCAATTTAGAATGTCTGACAGATCAGTCCTGGCATGTGCTGCACAGTTATGTAAATGTGTCACACCTAACTTGGGTCCAATGTCTTCAGACTTAGCACAGGTTGCCACTGGCATGGTCTGAGAATAGGAATAGAGCCATGCCCAGTG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211814421 409 + 227556264 ACTGTCAAGTGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGATCCCTCCTGTGTTACAGATGGATCAGCTAAAACAAGCCAACACTGAAGATAGAAAGAAT--GGGGTTAGGTTCATTGAAACCAGGACAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGCAGGTGTAGAAGCTCAGAGACATGCCGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGAGATGTAGGTATATCTTTCAAATTAGAATGTCTGACACATCACTCCCGGCATGTGCTGCATAGTTATGTGAACGTGTCACACCCAACTTGGGTCCAATGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCTGAGAGTAGGAATAGGGCCATGCCCACTG
i macFas5.chr1                     I 1323 I 8767
s papAnu2.chr1                     201374235 400 - 220367699 ATTGTCAAGAGCAGTCAGTGGTTCTGAAATACAATCCTCAGCCAAGGATCCCTCCTGTGTTACAGATGGATCAGCTAAAAGAAACCAACACTGAAGATACAAAGAATgggggggggggTTCATTGAAACCAGGGTAACACCTTTGCATGACTTAAACACAAAGATGACACTGACCTTGAGCAGGCATAGAAGCTCAGAGACATGCCCGTAAAATGAAATCCCTGAGGAACTTTGTAGCTACCCAGAGATACCTGG--------TTCAAATCAGAATATCTCACAT-TCACTCCCGGCATGTGCTGCAGAGTTATGTGAACGTGTCACACCTAACTTGGGTCCAGTGTCTTCAGACTGAGCACAGGTTGCCACT-GCATGGTCTGAGAAT-GGAATAGAGTTCTGCCCACTT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1008751 407 -   1280666 ACTGTCAAGAGCAGTCAGTGGTTCTGAAATATAATCCTTAGCCAAGGATCCCTCCTGTGTTACAGATGGATCCGCTAAAACAAGCCAACACTGAAGATAGAAAGAAT--GGGGTTAGGTTCATTGAAACCAGGACAACACCTTTGGATGAGCTAAACACAAAGATGACACTGACCTTGAGAAGGTATAGAAGCTCAGAGACATGCCGGCAAAATGAAATCCCTGAGGAACTTTGTAGCTACCTAGAGAGATGTCGGTATATCTTTCAAATTAGAATGTCTGACAGATCACTTCCGGCATATGCTGCACAGTTATGTGAATGTGTCACACCTAACTTGGGTCCGATGTCTTCAGACTGAGCACAGGTTGCCACTGGCATGGTCT--GAATAGGAATAGGGCCATGCCCACTG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     32435 44676 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=101319.000000
s hg38.chr1_KI270711v1_random           6017 62 +     42210 ACCCATCCTATGTCTGGGCTTCCAAATGGAACTATAGTTTCATTCAAATCTTCACGTGCCTA
s panTro4.chr1_GL389150_random         79569 62 +    113811 ACCCATCCTATGTCTGGGCTTCCAAATGGAACTATAGTTTCATTCAAATCTTCACGTGCCTA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348404 62 + 229942017 ACCCATCCTATGCCTGGGCTTCCAAATGGAACTACAGTTTCATTTAAACCTACATGTGCCTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258836 61 +    297174 ACCCATCCT-TGCCTGGGCTTCAAAATGGAACTATAGTTTTATTCAAACCTACATGTGCCTA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211823597 62 + 227556264 ATCCATCCTATGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACACGTGCCTA
i macFas5.chr1                     I 8767 C 0
s papAnu2.chr1                     201374635 62 - 220367699 TCCTATCCTATGTCTGGGATTCCAAACGGAACTACAGTTTCATTCAAACCTACATGTGCCTG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009158 62 -   1280666 ATCCAGCCTATGTCTGGGCTTCCAAATGGAACTACAGTTTCATTCAAGCCTACATGTGCCTA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tupBel1.scaffold_109258.1-256308     32435 44676 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=4242.000000
s hg38.chr1_KI270711v1_random          6079 2 +     42210 TA
s panTro4.chr1_GL389150_random        79631 2 +    113811 TA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107348466 2 + 229942017 TA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258897 2 +    297174 TA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211823659 2 + 227556264 TA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201374697 2 - 220367699 TA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009220 2 -   1280666 TA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s tupBel1.scaffold_4745.1-59635       48879 2 +     59635 TG
i tupBel1.scaffold_4745.1-59635   n 44676 I 8133
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=92531.000000
s hg38.chr1_KI270711v1_random          6081 54 +     42210 GGTCCTGCCTGCAGGAATGACATCTCTCGGCTTAGTAAGGGCTG--CTTACTGTGG
s panTro4.chr1_GL389150_random        79633 54 +    113811 GGTCCTGCCTGCAGGAATGACATCTCTCGGCTTAGTAAGGGCTG--CTTATTGTGG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107348468 54 + 229942017 GGTCCTGCCTGCAGGAATGACATCTCTCAGCTTAGTAAGGGCTG--CTTAGTGTGG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258899 54 +    297174 GGTCCTGCCTGCAGCAATGACATCTCTCAGTTTAATAAGGGCCG--CTTAGTGTGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211823661 54 + 227556264 GGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGTAAGGGCTG--CTTAGTGTGG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201374699 56 - 220367699 AGTCCTGCCTGCGGCAATGACATCTCTCAGCTTAGGAAGGGCTGACATTAGTGTGG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009222 54 -   1280666 GGTCCTGCCTGCAGCAATGACATCTCTCAGCTTAGGAAGGGCTG--CTTAGTGTGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
e tupBel1.scaffold_4745.1-59635       48881 8133 +     59635 I
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=8225.000000
s hg38.chr1_KI270711v1_random          6135 5 +     42210 GAATA
s panTro4.chr1_GL389150_random        79687 5 +    113811 GAATA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107348522 5 + 229942017 AAGTT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258953 5 +    297174 GAATA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211823715 5 + 227556264 GAATA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201374755 5 - 220367699 GAATA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009276 5 -   1280666 GAATA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s tarSyr2.KE942660v1                 469073 5 -    507792 GAAAA
i tarSyr2.KE942660v1              N 0 I 42
e tupBel1.scaffold_4745.1-59635       48881 8133 +     59635 I
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=24594.000000
s hg38.chr1_KI270711v1_random          6140 13 +     42210 TGACTCCCATCTG
s panTro4.chr1_GL389150_random        79692 13 +    113811 TGACTCCCATCTG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107348527 13 + 229942017 TGACTCTCATCTG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    258958 13 +    297174 TGACTCCCATCTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211823720 13 + 227556264 TGACTCCCATCTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201374760 13 - 220367699 TGACTCCCATCTG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1009281 13 -   1280666 TGACTCCCATCTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
e tarSyr2.KE942660v1                 469078 42 -    507792 I
e tupBel1.scaffold_4745.1-59635       48881 8133 +     59635 I
e gorGor3.chr1                    104472457 62085 - 229507203 I

a score=371.000000
s hg38.chr1_KI270711v1_random           6153 2 +     42210 --GA
s panTro4.chr1_GL389150_random         79705 2 +    113811 --GA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348540 2 + 229942017 --GA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258971 2 +    297174 --GA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211823733 2 + 227556264 --GA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201374773 2 - 220367699 --GA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009294 2 -   1280666 --GA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     77111 2 +    256308 CT--
i tupBel1.scaffold_109258.1-256308 I 44676 I 265
e tarSyr2.KE942660v1                  469078 42 -    507792 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=31170.000000
s hg38.chr1_KI270711v1_random           6155 21 +     42210 AGACCAGGTGGAGACTTGTTC
s panTro4.chr1_GL389150_random         79707 21 +    113811 AGACCAGGTGGAGACTTGTCA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348542 21 + 229942017 AGACCAGGTGGAACCTTATCA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258973 21 +    297174 AGACCAGGTGGAGCTTTATCC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211823735 21 + 227556264 AGACCGGGTGGAGCCTTATCA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201374775 21 - 220367699 AGCCCAGGTGGAACCTTATCA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009296 21 -   1280666 AGATCAGGTGGAGCCTTATCA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.KE942660v1                  469078 42 -    507792 I
e tupBel1.scaffold_109258.1-256308     77113 265 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=4323.000000
s hg38.chr1_KI270711v1_random           6176 3 +     42210 CCA
s panTro4.chr1_GL389150_random         79728 3 +    113811 CCA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348563 3 + 229942017 CCG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258994 3 +    297174 CCA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211823756 3 + 227556264 CCA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201374796 3 - 220367699 TCG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009317 3 -   1280666 CCG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.KE942660v1                  469120 3 -    507792 CCT
i tarSyr2.KE942660v1               I 42 I 197
e tupBel1.scaffold_109258.1-256308     77113 265 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=312341.000000
s hg38.chr1_KI270711v1_random           6179 193 +     42210 TCAAAGTAAGAAACCTATTGTCCACGTCAAGGGCGAAGCTGATGTGCTGTTCCTCAAATGAGTAAAACACACTTCTGTAGTGCTGGAATGAGTCAGGTAGTTCAAAGTACATTGACGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTCCACTTCCATCAGCATGCCGCTGAGCCT
s panTro4.chr1_GL389150_random         79731 193 +    113811 TCAAAGTAAAAAACCTATTGTCCACGTCAAGGGCGAAGCTGATGTGCTGTTCCTCAAATGAGTAAAACACACTTCTGTAGTGCTGGAATGAGTCAGGTAGTTCAAAGTACATTGACGGAGTCGAATAACATCTATCCAGTGAGTCCTGTAAGACTTCAGGCTCTTCCACTTCCATCAGCACACCGCTGAGCCT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348566 193 + 229942017 TCAAAGTAAAAAACCTATTGTCCATGTCAAGGGCCAAGCTGATGTGCTGTTCCTCAAATGAGTAAAACACATTTCTGTAGTGCTGGAATGAGTCAGGTAGTTCGAAGTACCTTGGAGGAGTCGAATAACATCTATCTAGTCAGTCCTGCAAGACTTCAGGCTCTTCCACTTCCATCAGCATGCCGTTGAGCCT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     258997 192 +    297174 TCAAAGTAAAAAACGTATTGTCCAC-TCAAGGGCCAAGCTGCTGTGCTGTTCCTTAAGTGAGTAAAAGGCACTTCTGTAGTGCTGGAATGAGTCAGGTAGTTCAAACTAAGTTGGAGGAGGTGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGCCTCTTCCACTTCCATCGGCACCCCGTTGAGCCT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211823759 192 + 227556264 TCAAAGTAAAAAACCTATTGTCCATGTCAAAGGTCAAGCCAATGTACTGTTCCTCAAATGAGTAAAAGGCACTTCTGTAGTGCTGGAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCGAATAATATCTA-TCAGTGACTCCTGCGAGACTTCAGGCTCTTCCACTTCCATCAGCACGCCACTGAGCCT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201374799 193 - 220367699 TCAAAGTAACAAACCCATTGTCCACGTCAAGGGCCAAGCTGACGTGCTGTTCCTCAAGTGAGTAAAAGCCACTTGTGTAGTGCTGGAATGAGTCAGGTAGTTGAAAGTAACTTGAAGGAGTCCAATAACATCCATTCAGTGAGTCCTGCAAGACTTCAGGCTCTCCTGCTTCCATCAGCACCCCGTTGAGCCT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009320 193 -   1280666 TCAAAGTAAAAAACCTATTGTCCATGTCAAAGGTCAAGCTAATGTGCTGTTCCTCAAATGAGTAAAAGGCACTTCTATAGTGCTGGAATGAGTCAGGTAATTCAAAGTAAGTTGAAGAAGTCAAATAACATCTATCCAATGAGTCCTACAAGACTTCAGGCTCTTCCGCTTCCATCAGCATGCCATTCAGCCT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.KE942660v1                  469123 197 -    507792 I
e tupBel1.scaffold_109258.1-256308     77113 265 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=102081.000000
s hg38.chr1_KI270711v1_random           6372 51 +     42210 GGAAAAGCAGACAAAACTAAAGAAGCAGCCAGGGAAAATCAGACACCACAG
s panTro4.chr1_GL389150_random         79924 51 +    113811 GGAAAAGGAGACAAAACTAAAGAAGCAGCCAGGGAAAATCAGACACCACAG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348759 51 + 229942017 GGAAAAGGAGACAAAACTAAAGAAGCAGCCAGGGAAAATCAGACACCACAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259189 51 +    297174 GGAAAAGCAGACAAAACTAAAGAAGCAGCCAGGGAAAATCAGACACCACAG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211823951 51 + 227556264 GGAAAAGGAGACAAAACTAAAGAAGCAGCCAGGGAAAATCAGACACCACAG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201374992 51 - 220367699 GGAAAAGGAGATGAAACTAAAGAAGCAGCCAGGGGAAATCAGACACCGCAG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009513 51 -   1280666 GGAAAAGGAGACAAAACTAAAGAAACAGCCAGAGAAAATCAGACACCACAG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.KE942660v1                  469320 44 -    507792 GGTAGAGAAGGTGAAGATAAA----CACCAAGGGGA---CTGAAACCACAG
i tarSyr2.KE942660v1               I 197 I 3955
e tupBel1.scaffold_109258.1-256308     77113 265 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=57631.000000
s hg38.chr1_KI270711v1_random           6423 36 +     42210 AGCCCC-ACTAGATTTCAGAAGTAACGTAAGGAAGTG
s panTro4.chr1_GL389150_random         79975 36 +    113811 AGCCCC-ACTAGATTTCAGAAGTAACATAAGGAAGTG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348810 37 + 229942017 AGCCCCAACTAGATTTCAGGAGTAACATAAGGAAGTG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259240 37 +    297174 AGCCCCAGCTAGATTTCAGGGGTAACACAAGGAAGTG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824002 37 + 227556264 AGCCCCAACTAGATTTCAGGGGTAACATAAGGAAGTG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375043 36 - 220367699 AGCCCCAACTAGATTTCA-GGGTCACATAGGGAAgtg
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009564 37 -   1280666 AGCCCCAACTAGATTTCAGGGGTAACATGAGGAAGTG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e tupBel1.scaffold_109258.1-256308     77113 265 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=5441.000000
s hg38.chr1_KI270711v1_random           6459 4 +     42210 GTAA
s panTro4.chr1_GL389150_random         80011 4 +    113811 GTTA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348847 4 + 229942017 ATTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259277 4 +    297174 ATTA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824039 4 + 227556264 GTTA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375079 4 - 220367699 gtta
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009601 4 -   1280666 GTTA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     77378 4 +    256308 GCAA
i tupBel1.scaffold_109258.1-256308 I 265 I 23
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=22228.000000
s hg38.chr1_KI270711v1_random           6463 24 +     42210 GAAAAGAAAAGGATAGATCCATTA
s panTro4.chr1_GL389150_random         80015 16 +    113811 GAAAAGAAAAAG---GAT-----A
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348851 16 + 229942017 AAAAAGAAAAAG---GAT-----A
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259281 16 +    297174 AAAAAGAAAAAG---GAT-----A
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824043 16 + 227556264 AAAAAGAAAAAG---GAT-----A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375083 16 - 220367699 aaaaaggaaaag---gat-----a
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009605 16 -   1280666 AAAAAGAAAAAG---GAT-----A
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e tupBel1.scaffold_109258.1-256308     77382 23 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=-1120.000000
s hg38.chr1_KI270711v1_random           6487 1 +     42210 -G
s panTro4.chr1_GL389150_random         80031 1 +    113811 -G
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348867 1 + 229942017 -G
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259297 1 +    297174 -G
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824059 1 + 227556264 -G
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375099 1 - 220367699 -g
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009621 1 -   1280666 -G
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     77405 1 +    256308 T-
i tupBel1.scaffold_109258.1-256308 I 23 I 85
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=130383.000000
s hg38.chr1_KI270711v1_random           6488 103 +     42210 ATCCATTAATGAGGT-AAAAAAAAAAAA---T-------TATTGCCTTTATGTTGGGATAGAAAAGGGCCAGGTAGAAAACAATgaaagagaaagac--------agagagacagaga--cag--------------------------a
s panTro4.chr1_GL389150_random         80032 108 +    113811 ATCCATTAATGAGGt-aaaaaaaaaaaaaaat-------tattGCCTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACAATgaaagagaaagac--------agagagagagagagacag--------------------------a
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348868  92 + 229942017 ATCAATTAATGAGGT-AAAAAAG--------T-------TATTGCCTTTATGTTGGGATAGACCAGGGCCAGGTAGAAAACAATgaaagag--------------agagagagagaga--cag--------------------------a
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259298 105 +    297174 ATCCATTAATGAGGT-AAAAAA---------T-------TATTGCCTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACAATGGAagagaaagacagggagagagagagagagaga--cag--------------------------a
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824060 130 + 227556264 ATCCATTAATGAGGT-AAAAAA---------TATATATATATTGCCTTTATGTTGGgatagaacagggccaggtagaaaacaatgaaagagaaagac--------agagagagagaga--gagagagagagagaggcagagacagagaaa
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375100  95 - 220367699 aTCTTTTAATGAGGT-AAACCA---------T-------TGTTGCCTTTATGTTGGGATAGAACAGGGCCAGGTAG-aaacaatgaaagagaaagac--------agagagagagaga--gag---------------------------
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009622 112 -   1280666 ATCCATTAATGAGGTAAAACAA---------T-------TATTGACTTTATGTTGGGATAGAACAGGGCCAGGTAGAAAACATTgaaagagaaagac--------agagagacagaaa--gaa------------gcagagacagagaga
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e tupBel1.scaffold_109258.1-256308     77406  85 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=397.000000
s hg38.chr1_KI270711v1_random           6591 3 +     42210 -gac
s panTro4.chr1_GL389150_random         80140 3 +    113811 -gac
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348960 3 + 229942017 -gac
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259403 3 +    297174 -gac
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824190 3 + 227556264 -gac
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009734 3 -   1280666 -gaa
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     77491 3 +    256308 TGT-
i tupBel1.scaffold_109258.1-256308 I 85 I 72
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e papAnu2.chr1                     201375195 0 - 220367699 C
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=10759.000000
s hg38.chr1_KI270711v1_random           6594  9 +     42210 ag--------agacaga
s panTro4.chr1_GL389150_random         80143  9 +    113811 ag--------agacaga
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348963  9 + 229942017 ag--------agagaga
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259406  9 +    297174 ag--------agagaga
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824193 17 + 227556264 agagagagaaagagaga
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375195  7 - 220367699 ----------agagaga
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009737  9 -   1280666 ag--------agagaga
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.KE942660v1                  469364 3955 -    507792 I
e tupBel1.scaffold_109258.1-256308     77494 72 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=108779.000000
s hg38.chr1_KI270711v1_random           6603 65 +     42210 gaGAAAGTGAGCT-AGTGAATTGGCCAGGT----GACATACTGGTAAGGGAGTAAAAGGACACTCTGAGT
s panTro4.chr1_GL389150_random         80152 65 +    113811 gagaaagtgagCT-AGTGAATTGGCCAGGT----GACATACTGGTAAGGGAGTAAAAGGACACTCTGAGT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107348972 65 + 229942017 gagaAAATGAGCT-AGTGAATTGGCCAGGT----GACACACTGATAAGGGAGTAAAAGGACACTCTGAGT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259415 66 +    297174 gagaaagcgagCTCAGTGAATTAGCCAGGT----GACACACTGATAAGGGAGTAAAAGGACATTCTGAGT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824210 67 + 227556264 gagaaagtgaGCTCAGTGAATTGGCCAGGTGACAGACACACTGATAAGGGAG---AAGGACACTCTGAGT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375202 66 - 220367699 gagaaagcgagcTGAGTGAATTGGCCAGGT----GACACACTGATAAGGGAGTAAAAGGACACTCTGAGT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009746 66 -   1280666 gagaaagcgagCTCAGTGAATTGGCCAGGT----GACACACTGATAAGGGAGAAAAAGGACATTCTGAGT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.ABRT02001635v1                 377 50 +      4393 --------GAG---AATGCACTGGGCAGAT----GAGGAACTGA----GGAAGAAAGAGACAAACCTAT-
i tarSyr2.ABRT02001635v1           n 3955 C 0
e tupBel1.scaffold_109258.1-256308     77494 72 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=-216.000000
s hg38.chr1_KI270711v1_random           6668 2 +     42210 TA-
s panTro4.chr1_GL389150_random         80217 2 +    113811 TA-
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107349037 2 + 229942017 TA-
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259481 2 +    297174 TA-
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824277 2 + 227556264 TG-
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375268 2 - 220367699 TA-
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009812 2 -   1280666 TG-
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     77566 2 +    256308 -AG
i tupBel1.scaffold_109258.1-256308 I 72 T 44494
e tarSyr2.ABRT02001635v1                 427 0 +      4393 C
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=181994.000000
s hg38.chr1_KI270711v1_random           6670 110 +     42210 GTGCCCTCATGACAC----ACAGCACACTGCGATCATG-------AAAAGAGTGAGCTCAATAGTTTTCCATAAAATATGCTCAAAATTCGATGCAGTGGCCATGAGAGTACA-GCTTTTGA
s panTro4.chr1_GL389150_random         80219 110 +    113811 GTGCCCTCATGACAC----ACAGCAAACTGCGATCATG-------AAAAGAGTGAGCGCAATAGTTTTCCATAAAATATGCTCAAAATTCGATGCAGTGGCCATGAGAGTACA-GCTTTTGA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107349039 110 + 229942017 GTACCCTCATGACAC----ACAGCAAACAGTGATCATG-------AAAAGAGTGAGCGCAATGGTTTTCCATAAAATATGCTCAAAATTCGATGCAGTCACCATGAAAGTACA-GATTTTGA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259483  96 +    297174 GTGTCCTCATGACAC----ACAGC---------------------AAAAGAGTGAGCTCTTTAACTTTCCAGAAAACGTGCTCAAAATTCTATGCAGTCGCCATGAAAGTACA-GCTTTTGA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824279 110 + 227556264 GTGCCCTCATGACAC----ACAGCAAACAGTGATCATG-------AAAAGAATGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAATTCGATGCAGTCACCATGAGAGTACA-GCTTTTGA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375270 108 - 220367699 GTGCCCGGATGACAC----ACAGCAAACAGTGATTATG---------AAGAGTGAGCTCAATAGTTTTCcataaaatgtgattaaaattcGATGCAGTTGCCATGAGAGTACA-GCTTTTGA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009814 110 -   1280666 GTGCCCTCATGACAC----ACAGCAAACAGTGATCATG-------AAAAGAATGAGCTCAATAGTTTTCCATAAAATGTGCTCAAAATTTGATGCAGTCACCATGAGAGTACA-GCTTTTGA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.ABRT02001635v1                 427 119 +      4393 ---CCCTGAAGAAACAGTTACAGTACACAGCACACATGTTGGGACATAAAGGTATATTCAGCATGTTTCCACAAATTGTGCTGAAATCAACATGCAGTGGTCAAATAAACACAGGCTCCTGA
i tarSyr2.ABRT02001635v1           C 0 n 0
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=413857.000000
s hg38.chr1_KI270711v1_random           6780 311 +     42210 AGTATGGTCATCCTATGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACATCTACTGCAATGAAAACCAACAGCAATGACAGTAGGAGTAATTCAGCCTTCGTTGAAAACATGAAATCAAACACACTCTGGTTTCCCTCAATCTGTTGCCTCCAGGTGTTAACACAGAATTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTCCTTCTTTTCTTCGTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTT
s panTro4.chr1_GL389150_random         80329 264 +    113811 AGGATGGTCATCCTATGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACATCTACTGCAATGAAAACCAACAGCAATGACAGTAGGAGTCATTCAGCCTTCGTTGAAAACATGAAATCAAACACACTCTGGCTTCCCTGAATCTGTTGCCTCCAGGTGTTAACACAGAATTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTC-----------------------------------------------CCCTT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107349149 249 + 229942017 GGTATGGTCAACCTATGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGACAGTAGGAGTAATTCAGCCTTCATTGAAAACATAAAATCAA--ACACTCTGGTTTCCCTGGATCTGTCGCCTACAGGTATTAAAACAGAATTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATTGTGGGTTTTGATCTTCTTCCTCTTCT------------------------------------------------------------TGGTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259579 251 +    297174 GGTATGGTCAACCTATGGTACATTAGTAAATGATAAGGGGAGGAAGAAATGAAAACCTAAATGTCTACTACAATGAAAACCAACAGCAATGACATTAGGAGTAATTCGGCCTTCGTTGAAAACATGAAATCAAACACACTCTGTTTTCCCTGAATCTGTCGTCTCCAGGTGTTAACACAGAATTAAGCATCCACAATTGCTGAAGATTACCTGGGGCATGGTGGGTTCTGATCTTCTTCCCCTTCT------------------------------------------------------------TGGTA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211824389 251 + 227556264 GGTATGGTCAACCTGTGGTACGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAGGAATTCAGCCTTCGTTGAAAACATGAAATCAAACACACTCTGGTCTCCCTGGATCTGTCGTCTCCAGGTGTTAACACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCCTTCT------------------------------------------------------------TGGTA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375378 249 - 220367699 GGTATGGTCAACCTATGGTACTTTAGTCAATGATaaggggaggaagaaatggaaacctAAACCTCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAGTCATTCAGCTTTCGTTGAAAACATGAAACCAAACACA--CTGCTTTCCCTGGATCTGTCATCTCCAGGTATTAAGAAAGAATTAAGCGTCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGttttcatcttcttcctcttct------------------------------------------------------------tggtA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1009924 251 -   1280666 GGTATGGTCAACCTGTGGTATGTTAGTAAATGATAAGGGGAGGAAGAAACGGAAACCGAAACGTCTACTGCAATGAAAACCAACAGCAATGTCAGTAGGAGGAATTCAGCCTTCATTGAAAACATGAAATCAAACACACTCTGTTTTCCCTGGATCTGTCGTCTCCAGGTGTTAACACAGAACTAAGCATCCACAATTGCTGAAAGTTACCTGGGGCATGGTGGGTTTTGATCTTCTTCCCTTTCT------------------------------------------------------------TGGTA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.ABRT02001635v1                 546   0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=1427622.000000
s hg38.chr1_KI270711v1_random           7091 621 +     42210  
s panTro4.chr1_GL389150_random         80593 621 +    113811  
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107349398 621 + 229942017  
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     259830 605 +    297174  
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94857824 618 + 229590362  
i rheMac3.chr1                     N 0 I 248
s macFas5.chr1                     211824640 621 + 227556264  
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201375627 609 - 220367699  
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1010175 614 -   1280666  
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.ABRT02001635v1                 546   0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=416211.000000
s hg38.chr1_KI270711v1_random           7712 187 +     42210 AGCAATGACATCTCTCAGCTCAGTAATGGCCACTTGGAGCAGGAATATGATCTTTATATGGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCTCCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGGGCAGGCAGGAGTCAGGCTGT
s panTro4.chr1_GL389150_random         81214 187 +    113811 AGCAATGACATCTCTTAGCTCAGTAATGGCCACTTGGAGCAGGAATATGATCTTTATATGGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCTCCCACGTCAAGGGAAAAGCCAACATGTTTTTCCTCCAATGCATAAGAGGAACTTCCATAGGGCTGGCAGGAGTCAGGCTGT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350019 187 + 229942017 AGCAATGACATCTCTCAGCTCAGTAATGGACACTTGGAGCAGGAATATGATCTCTATACAGAAGACTCAGTGGATCCTTATCACCGTCATAGAAAGGTACTTACCGTCCATGTCAAGAGAAAAGCCAACATGTTGTTCCTCCAATGAGTAAAAGGAACTTCCATAGGGCTGGCATGAATCAGTCAGT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     260435 187 +    297174 AGCAATGACATCTCTCAGCTCAGTAACGGCCACTTGGAGCAGGAATATGATCTCTATATGGAAGACTCAGTGGATCCTTATTGCCTTCATAGAAAGATACTCACCATCCACATCAAGAGAAAAGCCAACGTGTTGTTCCTCCAATGAGTAAAAGGAACTTCCATAGGGCTGGCATGAGTCAGGCAGT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94858690 187 + 229590362 AGCAATGACATCTCTCAGCTCAGTAATGGCCACTTGGAGCAGGAATATGATCTCTATAAAGAAGACTCAGTGGATCCTTATCACCTTCATAGAAAGGTACTCACCGTCCACATCAAGAGAAAAGCCAATGTGTCATTCCTCCAATGAGTAAAAGGAATTTCCGTAGGACTGGCATGAATCTGGCAGT
i rheMac3.chr1                     I 248 C 0
s macFas5.chr1                     211825261 187 + 227556264 AGCAATGACATCTCTCAGCTCAGTAACTGTCATTTGGAACAGGAATATGATCTCTATATGGAAGACTCAGTGGATCCTCATCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGCCAGTGTGTTATTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGCTGGCAGGAGTCAGGCAGT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376236 187 - 220367699 AGCAGTGACATCTCTCAGCTCAGTAACGGCCACTTGGAGCAGGAATATGATCTCTATACGGAAGACTCAGTGGATCCTCATCAGCTTCAGAGAAAGGTACTCACCATCCACGCCAAGAGAAAAGCCAACGTGTTGTTCCTCCAATGAGTAAAGGGAACTTCCCTGGGGATGGCATGAATCGGGAAGC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1010789 187 -   1280666 AGCAATGACATCTCTCAGCCCAGTAACGGCCACTTGGAGCAGGAATATGATCTCTATATGGAAGACTCAGTGGATCCTTTTCACCTTCATAGAAAGGTACTCACCATCCACATCAAGAGAAAAGTCAATGTGTTGTTCCTCCAGTGAGTAAAAGAAATTTCTGTAGGGTTGGCAGGAGTCAGGCAGT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e tarSyr2.ABRT02001635v1                 546   0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=366869.000000
s hg38.chr1_KI270711v1_random           7899 139 +     42210 TCAAGACAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTGCCTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGGAGGAAAAAGTAAAGAATAAGCCAGGGGAAATCAGACACA
s panTro4.chr1_GL389150_random         81401 139 +    113811 TCAAGACAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGGAGGAAAAAGTAAAGAATAAGCCAGGGGAAATCAGACACA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350206 139 + 229942017 TCAAGATAGCCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGCTCCCTGCTGATCCTGGAAAAGGAGGAAAAAGTAAAGAATAAGCCAGGGGAAGTCAGATACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     260622 138 +    297174 TCAAGACAACTGGAAGGTGTCAAATAACTTCTATCCAGTGAGTCCTGCAAAACTTCAGACTCTACTACCTTCAGCAGCTCTCTGCTGAGCCTGCAAAAGTA-GAAAACCTAAAGAATAAGCCAGGGGAAATCAGACACA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94858877 138 + 229590362 TCAAGATAACTGGAAGGAGTCAAATAATAACTATTCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGTTCCCTGCTGAGCCTGGAAAAGTA-GAAAAAGTAAAGAATAAGCCAGGGAAAATCAGACACA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211825448 138 + 227556264 TCAAGATAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTTCTGCAAGACTTCAGGATCTACTAACTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA-GAAAAAGTAAAGAACAAGCCAGGGGAAATCAGACACA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376423 138 - 220367699 TCAAGATAACTGTAAGGAGTCGAGTAATATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTACTACCTCCAGCAGCTCTCTGCTGAGCCtggaaaagta-gaaaaagtaaagaataagtCAGCAGACATCAGACACA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1010976 138 -   1280666 TCAAGATAACTGGAAGGAGATGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGATCTACTACCTCCAGTAGCTCCCTGCTGAGACCAGAAAAGTA-GAAAAAGTAAAGAATAAGCCAGAGGAAATCAGACACA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3625244 139 +  47448759 TCAAGATAAGCTGTATATGTTGAATACAATATATCCAGTGAGTACCAGAAGACTTCAGGCTCTTCTGCTTCCACCAGCTCCATGCTGAGCCTAAAAAAGGAGGAAAAACCAAAGAATAAGTCAGGGAAAATAAGACACC
i calJac3.chr18                    N 0 C 0
e tarSyr2.ABRT02001635v1                 546   0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=21324.000000
s hg38.chr1_KI270711v1_random           8038 7 +     42210 ACAGAGC
s panTro4.chr1_GL389150_random         81540 7 +    113811 ACAGAGC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350345 7 + 229942017 ACAGAGC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     260760 7 +    297174 ACCGAGC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859015 7 + 229590362 ACAGAGC
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211825586 7 + 227556264 ACAGAGC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376561 7 - 220367699 ATAGAGC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1011114 7 -   1280666 ACAGAGC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s nasLar1.chr1                     110450278 7 - 215897965 CCAATGC
i nasLar1.chr1                     N 0 I 577
s calJac3.chr18                      3625383 7 +  47448759 GCAGAGC
i calJac3.chr18                    C 0 C 0
e tarSyr2.ABRT02001635v1                 546 0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=153584.000000
s hg38.chr1_KI270711v1_random           8045 55 +     42210 CCCAACTAGGTTTCATGGGTAGCATAAGGAAGTGGTTGAAAAAGTAAAAGGAGAG
s panTro4.chr1_GL389150_random         81547 55 +    113811 CCCAACTAGGTTTCATGGGTAGCATAAGGAAGTGGTTAAAAAAGTAAAAGGATAG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350352 55 + 229942017 CCCAACTAGGTTTCATGGGTAGCATAAGGAAGTGGTTAAAAAAGAAAAAGGATAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     260767 55 +    297174 CCCAATTAGATTTCATGGGTAGCATAAGGAAGTGGCTAAAAAAGAAAAAGGATAG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859022 55 + 229590362 CCCAACTAGATTTCATGGGTAGGATAAGGAAGTGGTTAAAAAAGAAAAAGGATAG
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211825593 55 + 227556264 CTCAACTGGATTTCATGGGTAGCATAAGGAAGTGGTTAAAAAAGAAAAAGGATAG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376568 55 - 220367699 CCCAACTAGATTTCATGGGTAGCACAAGGAAGTggtcaagaaagaaaaatgatag
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1011121 55 -   1280666 CTCAACTGAATTTCATGGGTAGCATTTGAAAGTGGTTAAAAAAGAAAAAGGAGAG
i chlSab2.chr20_KE148050v1_random  C 0 I 3806
s calJac3.chr18                      3625390 55 +  47448759 CCCAACTAGATTTCATGGGTAGCACAAGAAAGTGGTTGATAAAGAAAAAACATAG
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                     110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                 546  0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=38087.000000
s hg38.chr1_KI270711v1_random           8100 17 +     42210 ATCCATTAATGAGGTAA
s panTro4.chr1_GL389150_random         81602 17 +    113811 ATCCATTAATGAGGTAA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350407 17 + 229942017 ATCCATTAATGAGGTAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     260822 17 +    297174 GCCCATTAATGAGGTAA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859077 17 + 229590362 ATCCATTAATGAGGTAA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211825648 17 + 227556264 ATTCATTAATGAGGTAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376623 17 - 220367699 atCCATGAATGAGGTAA
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3625445 17 +  47448759 ATCCACTAATGACGTAA
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                     110450285 577 - 215897965 I
e tarSyr2.ABRT02001635v1                 546  0 +      4393 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=339409.000000
s hg38.chr1_KI270711v1_random           8117 190 +     42210 -CAAATTATTGCTTTCATGTTGGGACAGAACAGGGCCAAATGGAAA-AGAATGAAAGAGAAAGaca--------------------cacacacacacacacacacacacacacacaGAGA------------AT----------GAGCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGCATACAGTGAT
s panTro4.chr1_GL389150_random         81619 221 +    113811 -CAAATTATTGCCTTCATGTTGGGACAGAACAGGGCCAAATGGAaa-agaatgaaagagaaagacagatagacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagaac----------gagCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA--CAGGACACTCTGAGTTACTGCCCTCAGGACACACAGCATACAGTGAT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350424 198 + 229942017 -CAAATTATTGCCTTCATATTGGGACAGAACAGGGCCAAATGGAAA-AGAATGAAAGagaaagaca--------------------gacagacagacacacacacacatacacagagaga----gagagagaAG----------GAACTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCTCTCAGGACACACAGCATACAGTGAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     260839 184 +    297174 -CAAATTATAGCCTTCATGTTGGGACAGAACAGGGCCAAATGGAaa-agaaagaaagacaaagaca--------------------gacagagagacagacac--------------aga----gaaaaagaga----------gagCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGAACACACAGCATACAGTGAT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859094 182 + 229590362 -CAAATTATTGCCTTCATATTGGGACACTAAAGGGCCAAATGGAAA-AGAATgaaagagaaagaca--------------------g------------------agagagagagagaga--gagagagagaga----------gagCTCAGTGAATTGTCCAGGTGATACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGTATACAGTGAT
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211825665 210 + 227556264 -CAAATTATTGCCTTCAATATGGGACACAACAGAGCCAAATGGAAA-AGAATGAAAGagacagaca--------------------gacagacacacacacacacagagagagagagaga--gagagagagagaCAGAAAAAATGAGCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCACTCAGGACACACAGCATACAGCGAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376640 197 - 220367699 -CAAATTATTGCCTTCATGTGGGGacagaacagagccaaatggaaa-aggatgaaagagaaagaca--------------------gacagaga---acagaggcagagagagagacaga--gagagacagaga----------gcgcTTGGTGAGTTGTCCAGGTGACACACTGATGAGGGAGTA-ACAGGACACTCTGAGTTAGTGCCCTCAGGACACACAGTATACAGTGAT
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3625462 165 +  47448759 -CAAACTATTGCCTT-ATGCTGGGATGAACAAGAGTAGGGGAGAAA-AGAATAAAAGAGACAGAGA--------------------------------------------------------AAGAGAGAAACT----------AAGCTCAGTGAACCGTCCAGGTGACACACTGATGAGGGAGTA-AAAGGACACTCTGAGTTAGTACCCTCAGGACACACAGCGTACACTGAT
i calJac3.chr18                    C 0 C 0
s tarSyr2.KE942496v1                  166110 158 +    410062 CAGAGAAATTCTCTTCTGAGAGGCATCCAGAGAGGCTACATGGGAACAATCTGTCAGAAGAGGACA--------------------G---------------------------------------------------------GGGCTCAGTCAACTCTACAGATTACAAGTGGAGGGGAAAGGAGAAAGGACATCCTGCATGGCAACCCTCATGACACACAGTAGGTGGTGAT
i tarSyr2.KE942496v1               n 0 I 919
e nasLar1.chr1                     110450285 577 - 215897965 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=334545.000000
s hg38.chr1_KI270711v1_random           8307 181 +     42210 CAGGAAAGGACTGTGCTCAATAATTTTCCATAAAATGTGCTCAAGTTTCCATGCAGTCGCCATGAGAATACAGTTTTTGAAGTCTGGTCCACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTTAGTAGGAA
s panTro4.chr1_GL389150_random         81840 181 +    113811 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAATGTGCTCACGTTTCCATGCAGTCGCCACGATAATACAGTTTTTGAAGTCTGGTCCACCTACAGTAGGTTAGTAAGTGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTGAGTAGGAA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350622 181 + 229942017 CAGGAAAAGACTGTGCTCAATAATTTTCCATAAAATGTGCTCAAGTTTCCATGCAGTTGCCATGAGAATACAGCTTTTGAAATCTGGTCCACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACCAACAGCAATGTTAGTAGGAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     261023 181 +    297174 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAATGTGCTCAAGATTCCATGCAGTCACCATAAGAATACAACTTTTGAAGTCTGGTCAACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCTAAATATCTACTGCAATGAAAACAAACAGCAGTGTTAGTAGGAA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859276 181 + 229590362 CATGAAGAGACTGTGCTCAATAATTTTCCATAAAATGTGCTCAGGATTCCATGTAGTCACCATGAGAATACAGCTTTTGAAGTATGGTCGGCCTATAGTAGGTTTGTAAATGATAAGGGGAGAAAGAAATGGAAACCTAAATATCTATTGCAATGAAAACCAACAGCAATGTTAGTAGGAA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211825875 181 + 227556264 CATGAAAAGACTGTGCTCAATAATTTTCCATAAAATGTGCTCAAGTTTCCATGCAGTCACCATGAGAATACAGCTTTTGAAGTATGGTCCACCTACAGTAGGTTCGTAAATGATAACGGGAGGAAGAAATGGATACCTAAATATCTACTGTCATGAAAACCAACAGCAATGTTAGTAGGAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201376837 181 - 220367699 CATGAAAAGGCTGTGATCAATAATGTTCCATCAAATGTGCTCAAGTTTCCATGTAGTCACCATGAGAATAGAGCTTTTGAAGTATGGTCCACCTACAGTAGGTTAGTAAATGATAAGGGGAGGAAGAAATGGGAACCTAAATATGTAATGCAATGAAAACCAACAGCAATGTTAGTAGGAA
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3625627  96 +  47448759 CATAAAAA----------------------------------------------------------------------CAAGTATGGTCAACCTACAGCA-GTTAGTAAATGGGAA--------------GGAAACCTAAGTATCTACTGCAATGAAAACCAACAGCGACGTTTGGAGGAA
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                     110450285 577 - 215897965 I
e tarSyr2.KE942496v1                  166268 919 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=3276.000000
s hg38.chr1_KI270711v1_random           8488 1 +     42210 T
s panTro4.chr1_GL389150_random         82021 1 +    113811 T
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350803 1 + 229942017 T
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     261204 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859457 1 + 229590362 T
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211826056 1 + 227556264 T
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201377018 1 - 220367699 T
i papAnu2.chr1                     C 0 C 0
s nasLar1.chr1                     110450862 1 - 215897965 T
i nasLar1.chr1                     I 577 I 3462
s calJac3.chr18                      3625723 1 +  47448759 T
i calJac3.chr18                    C 0 C 0
e tarSyr2.KE942496v1                  166268 919 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=842270.000000
s hg38.chr1_KI270711v1_random           8489 387 +     42210 AATTCAGGCTCGGTTGAAAAGATGTAATCGATAATGTCAGCCCGCCCTGTTTTCCCTGAACCAGGAGTCTCCAGATGTCAACACAGAAGTAGCTGTTCACAATTGCTC--AGTTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTTCCTGGTCCTTTTTAATTCCTGCAATACATTCAGACAGGGACAGACAAAATAAGCCAATTCACCTACACCCGTAACAGTCCACTGTCTAATCCCCACACAGGGATCTCAGGCTCCTCAGCAAGAGAACAGGACAATGTGAGAGATATACTTCAGGAGGCCTGAAAGCTGGTCATGAT----ATTCTTTGGTTTGCATCTCAGAACCAAGGGTGAAATATCCCTATTCTGGTAGATCGTTATCCC
s panTro4.chr1_GL389150_random         82022 387 +    113811 AATTCAGGCTCGGTTGAAAAGATGTAATTGATAATGTCAGCCCGCTCTGTTTTCCCCGAACCAGGAGTCTCCAGATGTCAACACAGAAGTAGCTGTTCACAATTGCTC--AGTTACCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTTCTTGGTCCTTTTTAATTCCTGCAATACATTCAGACAGGGACAGACAAAATAAGCCAATTCACCTACACCCATAACAGTCCACTGTCTAATCCCCACACAGGGATCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGATATACTTCAGGAGGCCTGAAAGCTGGTCATGAT----ATTCTTTGGTTTGCATCTCAGAACCAAGGGTGAAATATCCCTATTCTGGTAGATCGTTATCCC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107350804 390 + 229942017 AATTCAGGCTTGGTTGAAACGATGTAATCGATAATGTCAGCCCACTCTGTTTTCCCTGAACCAGGAGTCTCCAGGCGTCAACACAGAAGTAGCTGTTCACAATTGCTC--AGTTACCTGGGGCATGGTGGGTCTTGGTCTTCTTCCTCTTCTTGGTCCTTTTTAATTCCTGCAATAAATTCAGACAGGGACAGACAAAATAAGCCAATTCACCTACACCCATAACAGTCCACTGTCTAATGCCCACACAGGGATCTCAGGTTCCTCAGCATGAGAACAGGACAATGTGAGAGACATACTTCAGGAGGCCTGAAAGCCGGTCATGATAGAGATTCTTTGGTTTGCATCTCAG-ACCGAGGGTGAAATATCTCTATTCTGGTAGATTGTTATCCC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     261205 392 +    297174 AATTCAGGCTTGGTTGAAAAGATGTAATCGATATTGTCAGCCTGCTCTGTCTTCCCTGAACCAAGAATCTCCAGGTGTCAACATAGAAGTAGCTGTTCACAATTGTTCAAAGTTACCTGGGGCATGATGGGCCTTGGTCTTCTTCCTCTTCTTGGTCCTTTTTAATTCCTACGATAAATTCAGACAGGGACAGACAAAATAAGCCAATTCACTTACACCCATAACAGTCCACTGTCTAATCCCCACACAGGGACTTCAGGCTCCTCAGCATCAGAACAGGACAATGGGAGAGATATACTTCAGGAGGCCTGAAAGCCGGTCATGATAGAGATTCTTTAG-TTGCATCTCAGAACCAAGAGTGAAATACGACTATTATGGTAGATCTTTATCCT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859458 392 + 229590362 AATTCAGGCTTGGTTGAAAAGATGTAATCGATATTGTCGGCCCGCTCTGTTTTCCCTGAACCAGGAATCTCCAAGTGTCAACACAGAATTAGCTGTTCACAATTGCTCAAAGTTACCTGGGGCATGGTGGGCCTTGGTCTTCTCCCTCTTCTTGGTCCTTTTTAATTCCTGCAACAAATTCAGACAGGGACAGACAAAATAAGCCAATTTACCTA-ACCCATAACAGTCCACTGTCTAATCCCCACATGGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAAAGATATACATCAGGAGGTCTGAAAGTCGGTCATGATAGAGATTCTTTGGTTTGCATTTCAGAACCAAGGGTGAAATATCCCTATTCTGGTAGATTGTTATCCC
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211826057 393 + 227556264 AATTCAGGCTTGGTTGAAAAGATATAATCCATATTGTCAGCCTGCTCTGTTTTCCCTGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGTTCACAATTGCTCAAAGTTACCTGGGGCATGGTGGGCCTTCGTCTTCTTCCTCTTCTTGGTCCTTTTTAATTCCTGCAATAAATTCAGACAAGGACAAACAAAATAAGCCAATTTACCTACACCCATAACAGTCCACTGTCTAATCCCCACACGGGGACCTCAGGCTCCTCAGCATGAGAACAGGACAATGTGAGAGACATACTTCAGGAGGCCTGAAAGCCGGTCATGATAGAGGTTCTTTGGTTTGCATCGCTGAACCAAGGGTGCAATATCCCTATTCTGGTAGATCATTATCCC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201377019 390 - 220367699 AATTCAGGCTTGGTTGAAAAGATGTAATCAATAATGTCGGCCCGCTCTGTTTTCCCCGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGTTGTCAATTGCTCAGAGTTACCTGGGGCATGGTGGGCCTTggtcttcttcctcttct---accTTTGTAATTCCTGCAATAAAATCAGACAGGGACAGGCAAAATAAGCCAATTCACCTACACCCAGAACAGTCCACTCTCTAATCCCCACACAGGGACCACAGGCTCCTCAGCATGAGAACAGGATAATGTGAGAGATACACTGCAGGAGGCCTCAAAGCCGGTCATGATAGAGAGTCTGTGATTTACATCTCAGAACCAAGGGTCAAATGTCCCTATGCTGGTAGACAGTTATCCC
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3625724 388 +  47448759 ACTTCAGGCTTCATTGAAAAGATAGCATCGATATTGTCAGCCCACTCTGTTTTCCGTGGACCTGGCGTCTCCAGGTGTCAACACAAAATTAGCTGTTCACAGTTGCTCAAAGTTACCTGGGGCACAGTGGGCCTTGGTCTTCTTCCTCTTCTTGGTCCTTTTTAATCTCTGCAATAAATTCAGATAGGGA----CAAAGTTAGCC-ATTGCCCTACACCCATAACAGTCCACTGTCTAATCCCTGCACAGGGACCTCAGACTCCTCAGCTTGAGAACAGGATAACGTGAGAGAGAGACTTCAGGAGGTCTCAAGGCCAATCATGATAGAGATTCCTTGGTTTGTGTCTCAGAACCAATGGTGAAACGTCCCTATTCTGGTAGACTATTATCCC
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                  166268 919 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=250313.000000
s hg38.chr1_KI270711v1_random           8876 145 +     42210 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTATGCCTGATTGTTCCCATCAGTTCAAAGACAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCGTTCATGGATGCAAG
s panTro4.chr1_GL389150_random         82409 145 +    113811 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTATGCCTTATTGTTCCCATCAGTTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCGTTCATGGATGCAAG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107351194 145 + 229942017 AAAATCATTTATCCCAAGTTTATGCAAACAGTTATGCCTTATTATTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATTCCCAGCTCATTCATGGATGCAAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     261597 143 +    297174 AAAATCATTTATCCCGAGTTTGTGGAAACAGTTATGCCTTATTGTTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCATCTTGTTCATGGTTGCA--
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859850 145 + 229590362 AAAATCATTTATCCCAAGTTTGTGCAAACAGTTATGCCTTATTGTTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAGCTGCAGTATCCAGCCCTGTCTCATCAAATACCCAGCTTGTTCATGGTTCCAAG
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211826450 143 + 227556264 AAAATCATTTTTCCCAAGTTTGTGC--ACAGTTATGCCTTATTGTTCCCATAAATTCAAAGAAAATGTCCCAGATTATTTCTAGGAGGAAAACTGCAGTATTCAGCCCTGTCTCATCAAATGCCCAGCTCGTTCATGGATGCAAG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201377409 144 - 220367699 AAAATCATTTATCCCAAATTTGTGCAAACAGTTATGCCTTATTGTTCCCATCAATTCAAAGAAAATGCCCCAGATGATTTCTAGGAGGAAAACTGCTGTAT-CAGCCCTGTCTCATCAAATTCCCAACTTGTTCATGGTCGCAAG
i papAnu2.chr1                     C 0 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112   0 +  47448759 C
e tarSyr2.KE942496v1                  166268 919 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=-4609.000000
s hg38.chr1_KI270711v1_random           9021 3 +     42210 ---AAT
s panTro4.chr1_GL389150_random         82554 3 +    113811 ---AAT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107351339 3 + 229942017 ---AAT
i ponAbe2.chr1                     C 0 C 0
s rheMac3.chr1                      94859995 2 + 229590362 ---AA-
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211826593 3 + 227556264 ---AAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201377553 2 - 220367699 ---AC-
i papAnu2.chr1                     C 0 C 0
s tarSyr2.KE942496v1                  167187 3 +    410062 GTC---
i tarSyr2.KE942496v1               I 919 I 670
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I
e nomLeu3.chr24_GL397604_1_random     261740 0 +    297174 C

a score=260575.000000
s hg38.chr1_KI270711v1_random           9024 153 +     42210 TTTAGACACTGAAATTAGAATGAGGGAGGAAATCTACAAACCCTTGAGTCCAAATCATAGTTCTGTGAATTTTTTACATCTGCCTGGGTCCAATGTGCTGAGAGCGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCTTG
s panTro4.chr1_GL389150_random         82557 153 +    113811 TTTAGACACTGAAATTAGAATGAGGGAGGAAATCTACAAACCCTTGAGTCCAAATCATAGTTCTGTGAATTTTTTACATCTGCCTGGGTCCAATGTGCTGAGAGTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCTTG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107351342 153 + 229942017 TTTAGACACTGAAATTAGAATGAAGGAGGAAATCTACAAACCCTTAAGTCCAAATCATAGTTCTGTGAATTTTTTACATCTGCCTGGGTCCAATGTGCTGAGAGTGGGTTCAGGTTGCCACAAGCATGGCTGGAGACTAGGAATAGAGCCATG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     261740 150 +    297174 ---AGACCCTGAAATTAAAATGACGAAGAAAATCTACAAACCCTTGAGTCCAAATCATAGTTTTGTGAATTTTTCACATCTGCCTGGGTCCAATGTGCTGAGAGTGGGCTCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCATG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94859997 146 + 229590362 -------ACTGAAATTAGAATGAAGGAGGAAATCTACAAACCTTTGAGTCCAAATCACAGTTCTGTGAATTTCTTAAATCTGCCTGGGTCCAATGTGCTGACAGTGGGATCAGGTTGCCACAGGCATGGCTGGAGACTAGGAATAGAGCCATG
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211826596 153 + 227556264 TTTAGACACTGAAATTAGAATGAAGGAGGAAATCTACAAACCTTTGAGTCCAAATCACAGTTCTGTGAATTTTTTACATCTGCCTGGGTCCAATGTGCTGAGAATGGGCTCAGGTTGCCACAGGCATAGCTGGAGACTAGGAATAGAGCCATG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201377555 145 - 220367699 -------ACTGAAATTAGAATAAAGGAGGAAATCTACAAA-TGTTGAGTCCGAATCATAgttctgtgaattttttaaatctgccTCAGTCCAATGTGCTGAGAGTGGGTTCAGGTTGCCACAGGCATGACTGGACACTAGGAATAGAGCCATG
i papAnu2.chr1                     C 0 I 323
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112   0 +  47448759 C
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=633407.000000
s hg38.chr1_KI270711v1_random           9177 371 +     42210 CTCACTGACCCATTTCATGTCTAGGCTTCCAGCGGAGACTACAGTTTCATTACAACCTATATGCGCCCATAGGTCCTGCCTGCGGCAATGACATCTCTCGGGTCAGTAAGGGCCACTGGGAACAGGAATATCACCCCTATCTGGAAGACCAGGTGGAGGCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTTCTGTAGGGCTGGCCTAAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGGGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
s panTro4.chr1_GL389150_random         82710 371 +    113811 CTCACTGACCCATTTCATGTCTAGGCTTCTAGCAGAGACTACAGTTTCATTACAACCTATATGCGCCCACGGGTCCTGCCTGCGGCAATGACATCTCTCGGGTCAGTAAGGGCCACTTGGAACAGGAATATCACCCCTATCTGGAAGACCAGGTGGAGTCTTATCACCTTCATAGTAAGGTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTTCTGTAGGGCTGGCATAAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107351495 365 + 229942017 CTCACTGACCCATTTCATGTCTGGGCTTCCAATTGAGACTACAGTTTCATTACAACCTATATGTGCCCATAGGTACTGCCTGCGGCAATGACATCTCTCAGGTCAGTAAGGGCCACTTGGAACAGGAATATCACCCCTATCTGGAAGACCAGGTGGAGGCTTA------TCATAGTAAGGTACTCACTGTCCATGTCAAGATCCAAGCCAACATACTGTTCCTTCAATGAGTAAACGGCACTTCTGTAGGGCTGGCATAAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAACCTGGAAATGTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     261890 371 +    297174 CTCACTGACCCATTTCATGTCTGGGCTTCCAACTGAAACTACAGTTTCATTACAAGCTATATGCATCCATAGGCCCTGCCTATGGCAATGACATCTCTTGGGTCAGTAAGGGCCACTTGGAAGAGGAATATCATCCCTATCTGGAAGACCAGGTGGAGGCTTATCACCTTCATAGTAAGGTACTCACTGTCCACATCAAGAGCCAAGCCAAGGTGCTGTTCCTCCAATGAGTAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGGCAGTTCAAGATAACCGGAAGGAGTTGAATAACATATATCCAGTGAGTCCTGCAAGACTTCAGTCTCTTTCTTGTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94860143 367 + 229590362 CTCACTGACCCATTTCATGTCTGGGCTTCCAACTGAAACTACAGTTTCATTACAACCTATATGCGCCCATAGGTCCTGCCTGCGGCAATGACATCTCTCAGGTCAGTAAGGGCCACTTGGAAGAGGAATATCACCCCTATCTGGAAG---GGGTGGAGCCTTATCTCCTTCATAGTAAGTTACTCACTGTCCACGTCAAGAGCCAAGCCAAGGTACTCTTCCTCCAATGAGTAAAAGGCACTTTTGTAGGGCTGGCATAAGTCAGGCAGTTCAAGATAACCAGGAGGAGTCGAATAACATCTATCCAGTGAGTCCTGTAAGACTTCA-GCTCTTTCTCTTCCAGCAGCTCCCTGCTGAGCCTGGAAAAGGA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211826749 369 + 227556264 CTCACTGGTCCATTTCATGTCTGGGCTTCCAACTGAAACT--AGTTTCATTACAACCCATATGTGCCTATAGGTCCTGCCTGCGGCAATGACATCTCTCAGGTCAGTAAGGGCCACTTAGAACAGGAATATCACCCCTATCTGGAAGACCAGGTGGAGCCTTATCACCTTCATAGAAAGGTACTCACTGTCCACATCAAGAGCCAAGCAAAGGTGCTGTTCCTCCAATGAGTAAAATGCACTTCTATAGGGCTGACATGAGTCAGGCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201378023 371 - 220367699 ctcactgaCCCATTTCATATCTGGGCTTCCAACTGAAACTACAGTTGCATTACAACCTATATGTGTCCATAGGTCCTGCCAGCAGCAATGACATCTCTCGGGTCAGGAAGGGCCACTTGGAACAGGAATATCACCCCTATCAGGAAGACCAGGTGGAGCCTTATCACCTTCATAGTAAGGAACTCACTGTCCATGTCAAGAGCCAAGCCAAAGTGCTCTTCTTCCAACGAGTAGAAGGCATTTCTGTAGGGCTGGCATAAGTCAGGCAGTTCAAGATACCCGCAAGGGGTTGAATAAAATCTATCCAGTGAGTCCTGCAAGACTTCAGCCTCTTTCTCATCCAGCAGTTCCCTGTTGAGCCTGGAAAAGTa
i papAnu2.chr1                     I 323 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112   0 +  47448759 C
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=178732.000000
s hg38.chr1_KI270711v1_random           9548 150 +     42210 GGAAAAAGTAAAGAATAAGCCAGGGGGAATCAGAAACCACACAGCCCCAGCTACATTTCATGGCTAACATAAGGAACTGTTT-AAACAGAAAAAGGACAGATCCATTAATGAGGTAATGAATTATTGCCTTTATGTTGGGATAGACCAGGG
s panTro4.chr1_GL389150_random         83081 150 +    113811 GGAAAAAGTAAAGAATAATCCAGGGGGAATCAGAAACCACACAGCCCCAGCTAGATTTCATGGCTAACATAAGGAACTGTTT-AAAAAGAAAAAGGACAGATCCATTAATGAGGTAATGAATTATTGCCTTTATGTTGGGATAGACCAGGG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107351860 151 + 229942017 GGAAAAAGTAAAGAATAAGCCAGGGGGAATCAGAAACCACACAGCCCCAGCTAGATTTCATGGGTAACATAAGGAAGTGTTTAAAAAAGAAAAATGACAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGCTGGGATAAACCAGGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262261 150 +    297174 GGAGAAAGTAAAGAATAAGGCAGAGGAAATCAGAAACCACACAGCCCCAGCTAGATTTCATGGGTAACATAAGGAAGTGTTT-TAAAAGAAAAAGAACAGATCCAGTAATGAGGTAACAAATTATTGCCTTTATGTTGGGATAGACCAGGG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94860510 150 + 229590362 GGAAAAAGTAAAGAATAAGCCAGGTGGAATCAGAAACCACACAGCCCCAGCTAGATTTCATGGGTAACATAAGGAAGTGTTT-GAGAAGAAAAAGGACAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGTTGGGATAGACCAGGA
i rheMac3.chr1                     C 0 I 1
s papAnu2.chr1                     201378394 148 - 220367699 -ggaaaagtaaagaataagCCAGGGGGAATCAGAAACCACACAGCCCCAGCTAGATTTCATAGGGAACATAAGGAAGtgttt-ggaaagaaaaaggacagcTCTATTAATGAGGTAACAGATTATTGCCTTAATGTTGGCACA-ATCAGGG
i papAnu2.chr1                     C 0 I 1
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112   0 +  47448759 C
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=207.000000
s hg38.chr1_KI270711v1_random           9698 1 +     42210 C
s panTro4.chr1_GL389150_random         83231 1 +    113811 C
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352011 1 + 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262411 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e rheMac3.chr1                      94860660 1 + 229590362 I
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e papAnu2.chr1                     201378542 1 - 220367699 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=35359.000000
s hg38.chr1_KI270711v1_random           9699 34 +     42210 CAGGTAGAAAAGAATgaaagagaaagacagggag
s panTro4.chr1_GL389150_random         83232 34 +    113811 CAGGTAGAAAAGAATgaaagagaaagacaaggag
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352012 34 + 229942017 CAGGTAGAAAAGGATgaaagagaaagacagggag
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262412 34 +    297174 CAGGTATAAACGGATgaaagaggaagagagagag
i nomLeu3.chr24_GL397604_1_random  C 0 I 11
s rheMac3.chr1                      94860661 34 + 229590362 CAGGTAGAAAAGCATGAAAGAGAAACAGAGAGAG
i rheMac3.chr1                     I 1 C 0
s papAnu2.chr1                     201378543 34 - 220367699 CAGGTAGAAaaggatgaaagagaaagaaacacac
i papAnu2.chr1                     I 1 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112  0 +  47448759 C
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118  0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I

a score=1561.000000
s hg38.chr1_KI270711v1_random           9733 6 +     42210 agggag
s panTro4.chr1_GL389150_random         83266 6 +    113811 agggag
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352046 6 + 229942017 agggag
i ponAbe2.chr1                     C 0 C 0
s rheMac3.chr1                      94860695 6 + 229590362 AAAGAA
i rheMac3.chr1                     C 0 I 4
s papAnu2.chr1                     201378577 6 - 220367699 acacac
i papAnu2.chr1                     C 0 I 21
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=3543.000000
s hg38.chr1_KI270711v1_random           9739 8 +     42210 agggagag
s panTro4.chr1_GL389150_random         83272 8 +    113811 agagagag
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352052 8 + 229942017 agagagag
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201378604 8 - 220367699 agacagag
i papAnu2.chr1                     I 21 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e rheMac3.chr1                      94860701 4 + 229590362 I
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1011176 3806 -   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=2964.000000
s hg38.chr1_KI270711v1_random           9747 4 +     42210 agag
s panTro4.chr1_GL389150_random         83280 4 +    113811 agag
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352060 4 + 229942017 agag
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201378612 4 - 220367699 atag
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random     346225 4 +   1280666 agag
i chlSab2.chr20_KE148050v1_random  n 3806 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e rheMac3.chr1                      94860701 4 + 229590362 I
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118 0 + 227556264 C
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=516.000000
s hg38.chr1_KI270711v1_random           9751 1 +     42210 --a
s panTro4.chr1_GL389150_random         83284 1 +    113811 --a
i panTro4.chr1_GL389150_random     C 0 C 0
s panPan1.JH650218                    143372 1 +    451211 --a
i panPan1.JH650218                 N 0 I 24127
s papAnu2.chr1                     201378616 3 - 220367699 aca
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random     346229 3 +   1280666 aga
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e rheMac3.chr1                      94860701 4 + 229590362 I
e tarSyr2.KE942496v1                  167190 670 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e ponAbe2.chr1                     107352064 0 + 229942017 C
e macFas5.chr1                     211827118 0 + 227556264 C
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=100.000000
s hg38.chr1_KI270711v1_random           9752 1 +     42210 c
s tarSyr2.ABRT02360656v1               26711 1 -     83284 C
i tarSyr2.ABRT02360656v1           n 670 n 670
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e rheMac3.chr1                      94860701 4 + 229590362 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e papAnu2.chr1                     201378619 0 - 220367699 C
e gorGor3.chr1                     104472457 62085 - 229507203 I
e ponAbe2.chr1                     107352064 0 + 229942017 C
e macFas5.chr1                     211827118 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346232 0 +   1280666 C
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I
e panTro4.chr1_GL389150_random         83285 0 +    113811 C

a score=0.000000
s hg38.chr1_KI270711v1_random           9753 1 +     42210 a
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112 0 +  47448759 C
e rheMac3.chr1                      94860701 4 + 229590362 I
e tarSyr2.ABRT02360656v1               26712 670 -     83284 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e papAnu2.chr1                     201378619 0 - 220367699 C
e gorGor3.chr1                     104472457 62085 - 229507203 I
e ponAbe2.chr1                     107352064 0 + 229942017 C
e macFas5.chr1                     211827118 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346232 0 +   1280666 C
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I
e panTro4.chr1_GL389150_random         83285 0 +    113811 C

a score=132466.000000
s hg38.chr1_KI270711v1_random           9754 188 +     42210 gaggagaaagtgagCTCAGCGAATTGGCCGGGTGACACACTGATGAAGGGGTCAAAGGACACTCTGAGTTAGTGCCCTCGGGACACACAGAGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTTCCATAAACT-TGCTTAAGATTCCATGCAGTTGCC------ATACAGCCTTTGAGGTATGGTCAACCT
s panTro4.chr1_GL389150_random         83285 188 +    113811 gagGTGAAAGTGAGCTCAGCGAATTGGCCGGGTGACACACTGATGAAGGGGTCAAAGGACACTCTGAGTTAGTGCCCTCGGGACACACAGCGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTTCCATAAACT-TGCTCAAGATTCCATGCAGTTGCC------ATACAGCCTTTGAGGTATGGTCGACCT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352064 185 + 229942017 ---gagaaagtgagCTCAGCGAATTGGCCGGGTAACACACTGATGAAGGGGTCAAAGGACACTCTGAGTTAGTGCCCTCGGCACACACAGTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTTCCATAAACT-TGCTCAAGATTCCAGGCAGTTGCC------ATACAGATTTTGAGGTATGGTCAACCT
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201378619 194 - 220367699 -gagagagcaagagctCAGTGAATCGGCCAGGTGACACACTGATGAGGCAGTCAAAGAACACTTTGTATTTGTGCCCTCAGGACGAACAGCGAACAGTGATCATGAAAACAGTGGGCTCAATAATTTGGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGCATGGTTATCCT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random     346232 194 +   1280666 -gagagaaagagagCTCAGTGAATTGTCCAGGTGACACACTGATGAGGGAGTAACAGGACACTTTGAGTTAGTGCTCTAAGGACACACAGCATACAGTGATCATGAAAAGAATGCACTCAATAATTTTCCATAAAATGTGCTCAAGTTTCCATGCAGTCACCATGAGAATACAGCTTTTGAAGTATGGTCAACCT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112   0 +  47448759 C
e rheMac3.chr1                      94860701   4 + 229590362 I
e tarSyr2.ABRT02360656v1               26712 670 -     83284 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118   0 + 227556264 C
e nomLeu3.chr24_GL397604_1_random     262446  11 +    297174 I

a score=51111.000000
s hg38.chr1_KI270711v1_random           9942 54 +     42210 ACAGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCT---AAACATCTAC
s panTro4.chr1_GL389150_random         83473 54 +    113811 ACAGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCT---AAACATCTAC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352249 54 + 229942017 ATAGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCT---AAACATCTAC
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201378813 54 - 220367699 TCAGTAGGTTAGTAAATGATAAGGGTAGGAAAAAATGGAAACCT---AAATATTTAC
i papAnu2.chr1                     C 0 I 699
s chlSab2.chr20_KE148050v1_random     346426 54 +   1280666 ACTGTAAGTTAGTAAATGATAAGGGGAGGAAGAAATGGAAACCT---AAATATCTAC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.KE938186v1                  161674 54 -    592473 ACTGTATGTAACTGAATAGAAGAGAGGAGAAGAAATGAAAACCTATAAAAGACC---
i tarSyr2.KE938186v1               n 670 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112  0 +  47448759 C
e rheMac3.chr1                      94860701  4 + 229590362 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118  0 + 227556264 C
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=23457.000000
s hg38.chr1_KI270711v1_random           9996 25 +     42210 TGCAAGGAAAACCAACAGCAATGTC
s panTro4.chr1_GL389150_random         83527 25 +    113811 TGCAATGAAAACCAACAGCAATGTC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352303 25 + 229942017 TGCAATGAAAACCAACAGCAATGTC
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201379566 25 - 220367699 TGCAATGAAAACCAACAGCAATGTT
i papAnu2.chr1                     I 699 C 0
s chlSab2.chr20_KE148050v1_random     346480 25 +   1280666 TGCCATGAAAATCAACAGCAATGGT
i chlSab2.chr20_KE148050v1_random  C 0 n 0
s tarSyr2.KE938186v1                  161728 25 -    592473 CACAATGAAAACGGGATACAATGTA
i tarSyr2.KE938186v1               C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112  0 +  47448759 C
e rheMac3.chr1                      94860701  4 + 229590362 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118  0 + 227556264 C
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=20577.000000
s hg38.chr1_KI270711v1_random          10021 54 +     42210 AGTAGGAGTAATTCAACCTTCGTTGAAAACATGAAATTGA--------ACATACTCTTGTTT
s panTro4.chr1_GL389150_random         83552 54 +    113811 AGTAGGAGTCATTCAGCCTTCGTTGAAAACATGAAATTGA--------ACACACTCTTGTTT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352328 54 + 229942017 AGTAGGAGTAATTCAACCTTCGTTGAAAACATGAAATTGA--------ACACACTCTTGTTT
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201379591 61 - 220367699 AGTAGGAATAATTCAGGCTTGGTTGAAAAGATGTAATCAATAATGTCGGCCCGCTC-TGTTT
i papAnu2.chr1                     C 0 C 0
s tarSyr2.KE938186v1                  161753 61 -    592473 AACATGGAAAATTTAGGA-GAGCTTAAAAAATAAAATACAAATATCCAGTACTCTCTGGTTT
i tarSyr2.KE938186v1               C 0 n 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112  0 +  47448759 C
e rheMac3.chr1                      94860701  4 + 229590362 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118  0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=158663.000000
s hg38.chr1_KI270711v1_random          10075 348 +     42210 TCCCTGGACCTGGCATCTCCAGGTGTCAACACAGAATTAAGCATCCATAATTGCTCAAAGTTACCTGGGGCATGATGGGTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTTCTGCAATAAGTTCAGACATGGACAGACATATTAAGCTGGTTCTCCTACACACATAACAATCCACTGTCTAATCCTCACGCAGGGACTTCAGGCTCCTCAGCATGAGAATAGGACACTGTGAGAGATCTTCTTCAGGAGGCCTGAAGGCTGATCATGATAGAGATTCCTGGGTTTTTGTCCCAGAAACTGTGGGTAAAATTCCCTATTCTGGTAGATCGTTATCCCAAGATCA
s panTro4.chr1_GL389150_random         83606 348 +    113811 TCCCTGGACCTGGCATCTCCAGGTGTCAACACAGAATTAAGCATCCATAATTGCTCAAAGTTACCTGGGGCATGATGGGTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTTCTGCAATAAGTTCAGACATGGACAGACATATTAAGCTGGTTCTCCTACACACATAACAATCCACTGTCTAATCCTCACACAGGGACTTCAGGCTCCTCAGCATGAGAATAGGACACTGTGAGAGATATTCTTCAGGAGGCCTGAAGGCCGATCATGATAGAGATTCTTTGGTTTTTGTCCCAGAAACTGTGGGTAAAATTCCCTATTCTGGTAGATCGTTATCCCAATATCA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352382 348 + 229942017 TCCCTGGACCTGGCATCTCCAGGTGTCAACACAGAATTAAGCATCCATAATTGCTCAAAGTTACCTGGGGCATGATGGGTCTTGGTCTTCTTCCACTTCTTGGTACTTTTCAATTTCTGCAATAAGTTCAGACATGGACAGACATATTAAGCTGGTTCTCCTACACACATAACAATCCACTGTCTAATCCTCACACAGGGACCTCAGGCTCCTCAGCATGAGAATAGGACACTGTGAGAGATATTCTTCAGGAGGCCCGAAGGCTGATCATGATAGAGATTCCTTGGTTTTTGTCCTAGAAACTGTGGATAAAATTCCCTATTCTGGTAGATCGTTATCCTAATATCA
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201379652 345 - 220367699 TCCCCGAACCAGGAGTCTCCAGGTGTCAACACAGAATTAGCTGTTGTCAATTGCTCAGAGTTACCTGGGGCATGGTGGGCCTtggtcttcttcctcttct---tcctttgtaATTCCTGCAATAAAATCAGACAGGGACAGGCAAAATAAGCCAATTCACCTACACCCAGAACAGTCCACTGTCTAATCCCCACACAGGGACCACAGGCTCCTCAGCATGAGAACAGGATAATGTGAGAGATACACTGCAGGAGGCCTCAAAGCCGGTCATGATAGAGAGTCTGTGATTTACATCTCAGAACCAAGGGTCAAATGTCCCTATGCTGGTAGACAGTTATCCCAAAATCA
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626112   0 +  47448759 C
e rheMac3.chr1                      94860701   4 + 229590362 I
e tarSyr2.KE938186v1                  161814   0 -    592473 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505   0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446  11 +    297174 I

a score=32036.000000
s hg38.chr1_KI270711v1_random          10423 45 +     42210 TTTGTCCCAAGTTTGTGCAAATGGTTATGCCATATTTTTCCAATC
s panTro4.chr1_GL389150_random         83954 45 +    113811 TTTGTCCCAAGTTTGTGCAAATGGTTATGCCATATTTTTCCAATC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352730 45 + 229942017 TTTGTCCCAAGTTTGTGCAAATGGTTATGCCATATTTTTCCAATC
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201379997 45 - 220367699 TTTATCCCGAATTTGTGCAAATAGTTATGCCTTATTGTTCCCATC
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3626112 45 +  47448759 TTTATCCCAAGTTTGTACAAAAAGTTATGCCAAGTTTGTACAAAC
i calJac3.chr18                    C 0 I 3
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94860701  4 + 229590362 I
e tarSyr2.KE938186v1                  161814  0 -    592473 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118  0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=189285.000000
s hg38.chr1_KI270711v1_random          10468 445 +     42210 GATTTAAAGCAAATGCCCCCAAATGGTTGCTGGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTCTTCATGGTAGCGAGGATTTTAGACGCTGAAATTAGAGTGAAGGATGAAATCTACAAGATCTACAAAATTGAGACAAAATCAGAGTTGTGTGAATTTGTCACATCTGCCCAGATCCAACATCTTGAGAGTAGGATTAGGGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCCTGCTCACTGACCCATCCCTTGCCTGGGCTTCCAAGTGGAACTAGAGTTTCATT-CAACCTACATGTGCCTATAGGTCCTCCCTGTGGCAATGACATCTCTCAGCTCAGTAAGGGCCATTTGCAGTAGGAATATGA-CCCTAACCAGAAGACTCAGTGGATCCTTATCA----CCTTCATAGAAAGGTACTCACCAT
s panTro4.chr1_GL389150_random         83999 445 +    113811 GATTTAAAGCAAATGCCCCCAAATGGTTGCTGGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAGTACTCAGATTGTTCATGGTAGCGAGGATTTTAGACACTGAAATTAGAGTGAAGGATGAAATCTACAAGATCTACAAAATTGAGACAAAATCAGAGTTGTGTGAATTTGTCACATCTGCCCAGATCCAACATCTTGAGAGTAGGATTAGGGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCCCTGCTCACTGACCCATCCCTTGTCTGGGCTTCCAAGTGGAACTAGAGTTTAATT-CAACCTACATGTGCCTATAGGTCCTCCCTGTGGCAATGACATCTCTCAGCTCAGTAAGGGCCACTTGCAGTAGGAATATGA-CCCTAACCAGAAGACTCAGTGGATCCTTATCA----CCTTCATAGAAAGGTACTCACCAT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107352775 444 + 229942017 AATTTAAAGCAAATGCCCCCAAATGGTTTCTAGGAGAAAAACTGCAATATTCAGCCCTGTCTCATCAAATACTCAGATTGTTCAT-GTAGCAAGGATTTTAGATGCTGAAATTAGAGTGAAGGATGAAATCTAGAAAATCTACAAAATTGAGACAAAATCAGAGTTGTGTGAATTTGTCACATCTGCCCGGATCCAACATCTTGAGAGTAGGATTAGGGTGCCACAGACATGGCCTGAGACTATGAAGAGAGCCTTGCTCACTGACCCATCCCTTGTCTGGGCTTCCAAGTGGAACTAGAGTTTCATT-CAACCTACATGTGCCTATAGGTCCTCCCTGTGGCAACGACATCTCTCAGCTCAGTAAGGGCCACTTGCAGTAGGAATATGA-CCCTATCCAGAAGACTCAGTGGATCCTTATCA----CCTTCATAGAAAGTTACTCACCAT
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201380042 434 - 220367699 AATTCAAAGAAAATG-CCCCAGATGATTTCTAGGAGGAAAACTGCTGTATTCAGCCCTGTCTCATCAAATTCCCAACTTGTTCATGGTCGCA--------AGACACTGAAAGTAGAATAAAGGAGGAAATCTACA--------AATGTTGAGTCTGAATCATAGTTCTGTGAATTTTTTACATCTGCCTCAGTCCAATGTGCTGAGAGTGGGTTCAGGTTGCCACAGGCATGACTGGAGACTAGGAATACAGCCATGCTCACTGACCCATTTCATATCTGGGCTTCCAACTGAAACTACAGTTGCATTACAACCTATATGTGTCCATAGGTCCAGCCAGCAGCAATGACATCTCTCGGGTCAGGAAGGGCCACTTGGAACAGGAATATCACCCCTATCGGGAAGACCAGGTGGAGCCTTATCACCTTCCTTCATAGTAAGGAACTCACTGT
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626157   3 +  47448759 I
e rheMac3.chr1                      94860701   4 + 229590362 I
e tarSyr2.KE938186v1                  161814   0 -    592473 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505   0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446  11 +    297174 I

a score=-1240.000000
s hg38.chr1_KI270711v1_random          10913 1 +     42210 -C
s panTro4.chr1_GL389150_random         84444 1 +    113811 -C
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353219 1 + 229942017 -C
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201380476 1 - 220367699 -C
i papAnu2.chr1                     C 0 C 0
s tarSyr2.KE942496v1                  167860 1 +    410062 A-
i tarSyr2.KE942496v1               I 670 n 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626157 3 +  47448759 I
e rheMac3.chr1                      94860701 4 + 229590362 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505 0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=60366.000000
s hg38.chr1_KI270711v1_random          10914 129 +     42210 CATGTCAAGAGCCCAGCCAACACGCTGTTGCTCCAATATGTAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGTCAGTTCAAGATAACCTGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCAA
s panTro4.chr1_GL389150_random         84445 129 +    113811 CATGTCAAGAGCCAAGCCAACACGCTGTTGCTCCAATACGTAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGGCAGTTCAAGATAACCTGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGCCA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353220 129 + 229942017 CACGTCAAGAGCCAAGCAAACATGCTGTTGCTCCAATACGTAAAAGGCACTTCTGTAGGGCTGGCACAAGTCAATCAGTTCAAGATAACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAA
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201380477 129 - 220367699 CATGTCAAGAGCCAAGCCAAAGTGCTCTTCTTCCAACGAGTAGAAGGCATTTCTGTAGGGCTGGCATAAGTCAGGCAGTTCAAGATACCCGCAAGGGGTTGAATAAAATCTATCCAGTGAGTCCTGCAA
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626157   3 +  47448759 I
e rheMac3.chr1                      94860701   4 + 229590362 I
e tarSyr2.KE942496v1                  167861   0 +    410062 I
e tupBel1.scaffold_109258.1-256308     77568 44494 +    256308 T
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505   0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446  11 +    297174 I

a score=31444.000000
s hg38.chr1_KI270711v1_random          11043 51 +     42210 GACTTCAGGCC-CTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAACAGTG
s panTro4.chr1_GL389150_random         84574 51 +    113811 GACTTCAGGCT-CTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAACAGTG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353349 51 + 229942017 GACTTCAGGCT-CTTTCTCATCCAGCAGCTCCCTGCTGAGCCTGGAAAAGTG
i ponAbe2.chr1                     C 0 C 0
s papAnu2.chr1                     201380606 51 - 220367699 GACTTCAGCCT-CTTTCTCATCCAGCAGTTCCCTGTTGAGCCTGGAAAAGTa
i papAnu2.chr1                     C 0 C 0
s tupBel1.scaffold_109258.1-256308     33074 52 +    256308 GACTCCATTCCACCGTTTCAGTCAGCAGCTCCATCCTGAACACAGAGGTATG
i tupBel1.scaffold_109258.1-256308 T 44494 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626157  3 +  47448759 I
e rheMac3.chr1                      94860701  4 + 229590362 I
e tarSyr2.KE942496v1                  167861  0 +    410062 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211827118  0 + 227556264 C
e chlSab2.chr20_KE148050v1_random     346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=20690.000000
s hg38.chr1_KI270711v1_random          11094 28 +     42210 -GGAAAAAGTAAAGAATAAGCCA-GGGGGA
s panTro4.chr1_GL389150_random         84625 28 +    113811 -GGAAAAAGTAAAGAATAAGCCA-GGGGGA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353400 28 + 229942017 -GGAAAAAGTAAAGAATAAGCCA-GGGGGA
i ponAbe2.chr1                     C 0 C 0
s macFas5.chr1                     211827118 29 + 227556264 -GGAAAAAGTAAAGAATAAGCCAGGGGGGA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201380657 27 - 220367699 --ggaaaagtaaagaataagCCA-GGGGGA
i papAnu2.chr1                     C 0 C 0
s tupBel1.scaffold_109258.1-256308     33126 28 +    256308 AGGAGAATATAATATTGAACACA-GAAGA-
i tupBel1.scaffold_109258.1-256308 C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                      3626157  3 +  47448759 I
e rheMac3.chr1                      94860701  4 + 229590362 I
e tarSyr2.KE942496v1                  167861  0 +    410062 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random     346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=56230.000000
s hg38.chr1_KI270711v1_random          11122 54 +     42210 ATCAGAAACCACACAGCCCCAGCTAGATTTCATGGCTAACATAAGGAAGAGTTT
s panTro4.chr1_GL389150_random         84653 54 +    113811 ATCAGAAACCACACAGCCCCAGCTAGATTTCATGGCTAACATAAGGAAGAGTTT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353428 54 + 229942017 AACAGAAACCATACAGCCCCAGCTAGATTTCATGGGTAACATAAGGAAGTGTTT
i ponAbe2.chr1                     C 0 C 0
s macFas5.chr1                     211827147 54 + 227556264 ATCAGAAACCACACAGTGCCAGCTAGATTTCATGGGTAATATAAGGAAGTATTT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201380684 54 - 220367699 ATCAGAAACCACACAGCCCTAGCTAGATTTCATAGGTAACATAAGGAAGtgttt
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                     43914325 53 -  47448759 ATAAGACACCGCAGAGCCCCAACTAGATTTCATGGGTAGCACAAGTAAATGAT-
i calJac3.chr18                    n 3 C 0
s tupBel1.scaffold_109258.1-256308     33154 54 +    256308 ATTGGACATCACGGTTTTTTGATGAGTCCTGAGTGTTTATGTAAGTGAGAGGTC
i tupBel1.scaffold_109258.1-256308 C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94860701  4 + 229590362 I
e tarSyr2.KE942496v1                  167861  0 +    410062 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e chlSab2.chr20_KE148050v1_random     346505  0 +   1280666 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=13732.000000
s hg38.chr1_KI270711v1_random          11176 7 +     42210 GAAAAGA
s panTro4.chr1_GL389150_random         84707 7 +    113811 GAAAAGA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353482 7 + 229942017 GAAAAGA
i ponAbe2.chr1                     C 0 C 0
s macFas5.chr1                     211827201 7 + 227556264 GAAAAGA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201380738 7 - 220367699 ggaaaga
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1014982 7 -   1280666 GAAAAGA
i chlSab2.chr20_KE148050v1_random  I 3806 C 0
s calJac3.chr18                     43914378 5 -  47448759 --AAAGA
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_109258.1-256308     33208 7 +    256308 AGAGAGA
i tupBel1.scaffold_109258.1-256308 C 0 I 4696
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94860701 4 + 229590362 I
e tarSyr2.KE942496v1                  167861 0 +    410062 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=125413.000000
s hg38.chr1_KI270711v1_random          11183 89 +     42210 AAAAGGACAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGTTGGGATTGACTAGGGCCAGGTAGAAAAGGATGAAA-----------GAGAAAGa
s panTro4.chr1_GL389150_random         84714 89 +    113811 AAAAGGACAGATCCATTAATGAGGTAACAAATTATTGCCTTTATGTTGGGATAGACTAGGGTCAGGTAGAAAAGGATGAAA-----------GAGAAAGa
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353489 89 + 229942017 AAAAGGACAGATCCATTAATGAGGTAACAAACTATTGCCTTTATGTTGGGATAGACCAGGGCCAGGTAGAAAAGGATGAAA-----------CAGAAAGa
i ponAbe2.chr1                     C 0 C 0
s macFas5.chr1                     211827208 89 + 227556264 AAGAGGACAGATCCATGAATGAGGTAACAAACTATTGCCTTTATATTGGGATAGACCAGGGCCAGGTAAAAAAGGATGAAA-----------CAGAAAGa
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201380745 88 - 220367699 aaaaggacagcTCTATTAATGAGGTAACAGATTATTACCTTAATGTTGGCACA-ATCAGGGCCAGGTAGAAaaggatgaaa-----------gagaaaga
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1014989 89 -   1280666 AAAAGGATAGAGTCATCAATGAGGTTACAAATTATTGCCTTTATGTTGTGATAGACCAGGGCCAGGTAGAAAAGGATgaaa-----------gagaagga
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                     43914383 98 -  47448759 AAACACATAGATCCACTAATGACGTAACAAACTATTGCCTT-ATGCTGGGATGGACAAGAGTAGGGTAGAAAAGAATGAAAGGAAGGGGAGGGAGAAAG-
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94860701  4 + 229590362 I
e tarSyr2.KE942496v1                  167861  0 +    410062 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I
e nomLeu3.chr24_GL397604_1_random     262446 11 +    297174 I

a score=22080.000000
s hg38.chr1_KI270711v1_random          11272 13 +     42210 cacacacacacac
s panTro4.chr1_GL389150_random         84803 13 +    113811 cacacacacacac
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353578 13 + 229942017 cacacacacatac
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262457 13 +    297174 cacccacacacat
i nomLeu3.chr24_GL397604_1_random  I 11 C 0
s macFas5.chr1                     211827297 13 + 227556264 cacacacacacac
i macFas5.chr1                     C 0 I 14
s papAnu2.chr1                     201380833 13 - 220367699 aacacacacacac
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1015078 13 -   1280666 cacacacacacac
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914481  0 -  47448759 C
e rheMac3.chr1                      94860701  4 + 229590362 I
e tarSyr2.KE942496v1                  167861  0 +    410062 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=759243.000000
s hg38.chr1_KI270711v1_random          11285 323 +     42210 acacacacacacacacacac--------a------------------cacacacaGAGTGAGCTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTCAACGGTCATTCTCTATTTGAGCTCTCAGGACACACAGTGAACAGTGATCATGAGAAGCATGGCCTCAATAATTTTGCATAAAATGTGCTCAAGTTTCCCTGCAGCCACCATGAGAATACAGCTTTTGAGGTATGGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTCTAATGAGAACCAAAAAGCAATG-TAGTAGGCATAATTTAGACTTGTCTGAC
s panTro4.chr1_GL389150_random         84816 315 +    113811 acacacacacacacacacac--------a--------------------------GAGTGAGCTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTCAAAGGACACTCTGTATTTGTGCTCTCAGGACACACAGTGAACAGTGATCATGAAAAGCATGGCCTCAATAATTTTGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGTATGGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTCTAATGAGAACCAAAAAGCAATG-TAGTAGGCATAATTCAGACTTGTCTGAC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353591 327 + 229942017 acacacacacacacacaaac--------a--------------GAGAGAGAGAGAGAGTGAGCTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTCAAAGGACACTCTTTATTTGTGCCCTCAGGACACACAGTGAACAGTGATCATGAAAAGTGTGGCCTCAATAATTTTGCATAAAATGTGCTCAGGTTTCCCTGCAGTCACCATGAGAATACAGCTTTGGAGGTATGGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACTTAAACATTTACTGTAATGAGAACC-AAAAGCAACGTTAGTAGGCATAATTCAGACTTGTCTGAC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262470 339 +    297174 gcatacacacacacacacac--------agg--gagagagagagagacagagagatagtgagCTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAATCAAAGGACACTCTGTATTTGTGCCCTCAGGACGCACAGCAAACAGTGATCATGAAAAGAGTGGGCTTAATAACTTTGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACTATGAGAAGACAGCTTTTGAGGTATGGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAAAGAAAACCTAAACATTTAATGTAATGAGAACC-AAAAGCAATGTTAGTAGGCATAATTCAGACTTGTCTGAC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94860705 319 + 229590362 acacacacgcacacacacac------------------------------aGAGACAGTGAGCTCAGTGAATTGGCCAGGTGACACACTGATAAGGGAGTCAAAGGACACTCTGCATTTGTGCCCTCAGGATACACAGTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTTGCATAAAATGTGCTTAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGTATGGTCAACCTTCACTAGGTTAGTAAATGACAAGGGTAGGAAGAAATGGAAACCTAAACATTTACTGTAATGAGAACC-AAAAGCAATGTTAGTAGGTATAATTCAGACTTGTCTGAC
i rheMac3.chr1                     I 4 C 0
s macFas5.chr1                     211827324 344 + 227556264 acacacacacacacacacacagagagagagagagagagagagagagagagagagagagagagCTCAGTGAATTGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCCTCAGGACACACAGTGAACAGTGATGATGAAAAGAGTGGGCTCAATAATTTTGCATAAAATGTGCTC--GTTTCCTGGCAGTCACCATGAGAATACAGCTTTAGAGGTATGGTCAACCTTCACTAGGTTAGTAAATGATAAGGGTAGGAAGAAATGGAAACCTAAACA--TACTGTAATGAGAATC-AAAAGCAATGTGAGTAGGTGTAATTCAGACTTGTCTGAC
i macFas5.chr1                     I 14 C 0
s papAnu2.chr1                     201380846 326 - 220367699 ----------acacacacaa-------------gagacagagatagacagagagagtaagagCTCAGTGAATCGGCCAGGTGACACACTGATGAGGCAGTCAAAGAACACTTTGTATTTGTGTCCTCAGGACGAACAGTGAACAGTGATCATGAAAACAGTGGGCTCAATAATTTGGCATAAAATGTGCTCAAGTTTCCCTGCAGTCACCATGAGAATACAGCTTTTGAGGCATGGTCAACCTTCAGTAGGTTAGTAAATGATAAGGGTAGGAAAAAATGGAAACCTAAATATTTACGgtaatgaaaacc-aaaagcaataTTAGTAGGCATAATTCAGACTTGTCTGAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1015091 334 -   1280666 ------acacacacacacac--------agaatgagagagagagagaaagagagagagagagCTCAGTGAATCGGCCAGGTGACACACTGATGAGGGAGTC-AAGGACACTCTGTATTTGTGCCGTCAGGACACACACTGAACAGTGATCATGAAAAGAGTGGGCTCAATAATTTCGCATAAAATGTGCTCAAGTTTCCCGGCAGTCACCATGAGAATACAGCTTTTGAGGTATGGTCAACCTTCACTAGGTTAGCAAATGATAAGGGTAGGAAGAAATGGAAACTTAAACATTTACTGTAATGAGAACC-AAAAGCATTGTTAGTAGGCATAATTCAGACTTGTCTGAC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                     43914481 226 -  47448759 ----------------------------------------------------AGAGAGTAAGCTCAGTAAACCGTCCAGGTGACACACTGATGAGGGAGTAAAAGGACACTCTGAGTTAGTACCCTCAGGACACACAGCGTACACTGATCATAAAAAC----------------------------------------------------------------------AAGTATGGTCAACCTACAGCA-GTTAGTAAATGGTAAGGGGAGGAAGAAACGGAAACCTAAATATCTATTGCAATGAAAACC-AACAGCGATGTTTGTAGAAATACTTCAGGATTTGTTGAA
i calJac3.chr18                    C 0 n 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e tarSyr2.KE942496v1                  167861   0 +    410062 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=268292.000000
s hg38.chr1_KI270711v1_random          11608 116 +     42210 AAGACAAAATCATTATTTTCAGCATGTACTGTTTTCCCTGGACTTGGCATCTCCAGGTGTCAACATCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTTGCCTCT
s panTro4.chr1_GL389150_random         85131 116 +    113811 AAGACAAAATCATTATTTTCAGCATGTACTGCTTTCCCTGGACTTGGCATCTCCACATGTCAACATCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTTGCCTCT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107353918 116 + 229942017 AAGATGAAATCATTATTTTCAGCATGCACTCTTTTCCCTGGACTTGGCGTCTCCAGGTGTCAACATCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTTGCCTCT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262809 116 +    297174 AAGATGAAATCATTATTTTCAGCATGTACTGTTTTCCCTGGACTTGGCGTCTCCAGGTGTCAACACCAAATTAACTGTCCACAATTTCTCAGACTCACCTGGGATCTGTTGCCTCT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94861024 116 + 229590362 AAGATGAAATCATTATTTTCAGCATGTACTGTTTTCCCTGGACTTGGCGTCTCCAGGTGTCAACATCAAATTAACTGTCCACAATTTCTCAGACTCACCTCGGACctgttgcttct
i rheMac3.chr1                     C 0 I 2018
s macFas5.chr1                     211827668 116 + 227556264 AAGATGAAATCATTATTTTCAGCATGTTCTATTATCCCTGAACTTGGCGTCTCCAGATGTCAACATCAGTTTAACTGTCCACAATTTCTCAGACTCACCTGGGACATGTTGCCTCT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201381172 116 - 220367699 AAGGCAAAATAACTCTTTTCAGCATGTACTGTTTTCCCTGCACTTGGCGTCTCTAGGTGTCAACAGCAAATAAACTGTCCACAATTTCTCAGACTCACCTGGGACCTGTGGCCTCT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1015425 116 -   1280666 AAGATGAAATCTTTATTTTCAGCATGTACTGTTTTCCCTGGACTTGGCGTCTCCAGGTGTCAACATCAAATTAACAGTCCACAATTTCTCAGACTCACCTGGGACCTGTGGCCTCT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707   0 -  47448759 I
e tarSyr2.KE942496v1                  167861   0 +    410062 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=26753.000000
s hg38.chr1_KI270711v1_random          11724 15 +     42210 TGGTCCTCCTTTTTC
s panTro4.chr1_GL389150_random         85247 15 +    113811 TGGTCCTCCTTTTTC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354034 15 + 229942017 TGGTCCTCCTTTTCC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262925 15 +    297174 TGGTCCTCCTTTTTC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211827784 15 + 227556264 TCGTCCTCCTTTTAC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201381288 15 - 220367699 TGGTCCTCCTTTTTC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1015541 15 -   1280666 TGGTCCTCCTTTTTC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707  0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE942496v1                  167861  0 +    410062 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=399636.000000
s hg38.chr1_KI270711v1_random          11739 207 +     42210 ACTTG-----ATCCCACCGATGTCCTGCAAATAAATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACAT----TCCTCTGTCCAATCCTAACACAGGTACATCAGTCTGGTCAGTGTGAGAACAGGAGACTTTGAGAGAAATATTCCAGTAGGCCTGAGGTCAAGTCTTGAGAAAACTGGCTTGGGTTCTTTCA-TGAGC
s panTro4.chr1_GL389150_random         85262 207 +    113811 ACTTG-----ATCCCACCGATGTCCTGCAAATAAATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACAT----TCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTGTCAGTGTGAGAACAGGAGACTTTGAGATAAATATTCCAGTAGGCCTGAGGTCAAGTCTTGAGAAAACTGGCTTGGGTTCTTTCA-TGAGC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354049 207 + 229942017 ACTTG-----ATCCCACCGATGTCCTGCAAATAAATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACAT----TCCTCTGTCTAATCCTAACACAGGGACATCAGTCTTGTCAGTGTGAGAACAGGAGACTTTGAGAGAAATATTCCAGTAGGCCTGAGGTCAAGTCTTGAGAGAACTGGCTTGAGTCCTTTTA-TGAGC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     262940 207 +    297174 ACTTG-----CTCACATCGATGTCCTGAAAATAAATTCAGATGGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACCT----TCCTCTGTCCAATCCTAACACAGGGACATCAGTTTTCTCAGTGTGAGAACAGGAGACTTTGAGAGAAATATACCAGGAGTCCTGAGGTCAAGTCTTGAGAGAACTGACTTGGTTCCTTTCT-TGAAC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211827799 206 + 227556264 ACTTG-----ATCCCACCGATGCCCTGCAAAT-AATTCAGATAGGGCCTCTTACATTAAGCAGTTCTTCCTTGCACACAGAAACAT----TCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTGTGAGAACAGGAGACTTTGAGAGAAATATAACAGAAGGCCTGAGGTCAAGTCTTGAGAGAACTAACTTGGTTCCTTTCA-TGAGC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201381303 207 - 220367699 ACTTC-----ATCACACCAATGTCCTGCAAAGAAATTCAGATGGGGCCTCTTACATGAAGCAGTTCTTCCTTGCACACACAAACAT----TCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTGTGGGAACAGAAGACTTTGAGAGAAACATAACCAGAGGCATGAGGTCAAGTCTTGAGAGAACTGACTTGGTTCCTTTCA-TGAGC
i papAnu2.chr1                     C 0 M 724
s chlSab2.chr20_KE148050v1_random    1015556 206 -   1280666 ACTTG-----ATCACACCGATGTCCTGCAAATAAATTCAGATGGGGCCTCTTACATGAAGCAGTTCTTCCTTGCACACAGAAACAT----TCCTCTGTCCAATCCTAACACAGGGACATCAGTCTTCTCAGTGTGAGAACAGGAGACTTTGAGAGTAATAT-ACCAGAGGCCTGAGGTCAAGTCTTGAGAGAACTGACTTGGTTCCTTTCA-TGAGC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.KE951269v1                   10305 209 +     19294 GTTTGCAGGCATCATATAGATTTTCTAAAAGTGAATTCAGGTGTG---TGTCACATTAAGGAGATCCCTCTC-----CAGACATCTCTTATTCACGGTCCACTTCCAACATAGGGACATCAGTCTCCTCAATGTGAGAATAGGACATTTTTAGAGCTTTATTGCAGAGGGCCTGGGCTCATGGCTTGGGACAACTGTCTTGGTTGGTTTTGCTGAGC
i tarSyr2.KE951269v1               n 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707   0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=155900.000000
s hg38.chr1_KI270711v1_random          11946 133 +     42210 -CTTGGGCAAAATTACCCTGTTTTGGAATGTTATCTTCCCTATGTGCTCTGTCCTAGGTTTGTGTACACAAATGAGCAACTTTTTCCCCAATAAATTGTAGGCAAATAGTTCTAACACCTCATAGGAGAGATAC
s panTro4.chr1_GL389150_random         85469 133 +    113811 -CTTGGGCAAAATTACCCTGTTTTGGAATGTTATCTTCCCTATGTGCTCTGTCCTAAGTTTGTGTACACAAATGAGCAATTTTTTCCCCAATAAATTGTAGGCAAATAGTTCTAACACCTCATAGGAGAGATAC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354256 133 + 229942017 -CTTGGGCAAAATTCCCCTGTTTTGGAATGTTATCTTCCCTATGTGCTCTGTCCTAGGTTTGTGTACACAAATGAGCAATTTTTTCCCCAATAAATTGTAGGCAAATAGTTCTAACACCTCGTAGGAGAGATAC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263147 133 +    297174 -CTTGGGCAAAATTCCCCTGTTTTGGAACATTATCTTCCCAATGTGTTCTGTCCTAGGTTTGTGTACACAAATGAGCAATATTTCTCCCAATAGAGTTTAGGCAAATAGTTCTAACACCTTGTAGGAGAGATAC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828005 129 + 227556264 -CTTGGGCAAAATTCCCCTG-TTTGGAACGTTATCTT-CCAATGTGCTCTGTCCTAGGTGTGTGT--ACAAATGAGCAATGTCTTTCCCAGTAGATTTTAGGCAAATAGTTCTAAGACCTCGTAGTAGAAATAC
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1015762 128 -   1280666 -CTTGGGCAAAATTCCCGT--TTTGGAACGTTATCTT-CCAATGTGCTCTGTCCTAGGTTTGTGT--ACAAATGAGCAATGTCTTTCCCAATAGATTGTAGGCAAATAGTTCTAACACCTCGTAGAAGAGATAC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tarSyr2.KE951269v1                   10514 117 +     19294 TAGGGGGCACAATCTCCATGTTCACGTAGGTTATCACTCCAATATCATCTGTGC----------------ATGGACTAATTTATTTCCCCACAGGCCATAGGT-AGCAGCCCACCTGCCTTTTAGGAGGAAAAC
i tarSyr2.KE951269v1               C 0 n 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707   0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=308657.000000
s hg38.chr1_KI270711v1_random          12079 253 +     42210 TTCAATATTAAGCTTTCTCTCATCAAATACCCAGAATTTGATAGTTTATGAGATTGTGGACACAGAGATTTGATGAAGGGGTGCAATGTACCAGCTCTTGAGTCAAAATGAAACTTGGTTCTACACAGAAGCATCAGCTATTATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAATATACCAGGAACATGACGGACAGATGAGCTAAAGCAAGCGAACTTAGAAGACACAGAAAATGGGAATAAA
s panTro4.chr1_GL389150_random         85602 253 +    113811 TTCAATATTAAGCTTTCTCTCATCAAATACCCAGAATTTGATAGTTTATGAGATTGTGGACACAGAGATTTGATGAAGGGGTGCAATGTACCAGCTCTTGAGTCAAAATGAAACTTGGTTCTACACAGAAGCATCAGCTATTATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAACATACCAGGAACATGACGGACAGATAAGCTAAAACAAGCGAACTTAGAAGACACAGAAAATGGGAATAAA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354389 252 + 229942017 TTCAATATTAAGCTTTCTCTCATCAAATACCAAGAATTTGATAGTTTATGAGATTGTGGACACTGAGATTTGATGAAGGGGTGCAATGTACCAGCTCTTGAATCAAAATGAAACTTGGTTCTACACAGAAGCATCAGCTATTATGGCTTTTGTGGGTG-AAATTCAGCCATTTTTCTAGAAAACATACCAGCAACATGATGGACAGATGAGCTAAAACAAGCGAACTTAGAAGACACAGAAAATGGGGATAAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263280 253 +    297174 TGCAATATTCAGGATTCTCTCATCAAATACCCAGGATTTGATAGTTTACGAGATTGTGGACACTGAGATTTGATGGAGGGGTGCAATGTACCAGCTCTTGAGTCAAAATGAGACTTGGTTCTACAAAGAAGCATCAGCTATTATGGCTTTTGTGGGTGAAAAGTCAGCCATTTATCTAGAAAACATACCAGCAAGATGATGAACAGATGGGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATAAA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828134 252 + 227556264 TACAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATACTTTACGAGATTGGGGACACTGAGATTTTATGAAGGAGTGCAATGTACCAGCTCTTGAGTCAAAATAAGACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGCGGGTGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGAAGATGGACAGATGAGCTAAAACAAGCCAACTTAGAAGACACAGAAAATGGGGATAAA
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1015890 251 -   1280666 TGCAATATTCAGGCTTCTCTCATCAAATACCCAGGATTTGATAGTTTACGAGATTGGGGACACTGAGATTTGATGAAGGGGTGCAATGTACCAGCTTTTGAGTCAAAATGA-ACTTGGTTCTACACAGAAGCATCAGCTATTATGG-TTTTGTGGGTGAAAAGTCAGTCATTTATCTAGAAAACATACCAGCAAGACGATGGACAGCTGAGCTAAAACAAGCCAACTGAGAAGACACAGAAAATGGGGATAAA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707   0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631   0 +     19294 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=24958.000000
s hg38.chr1_KI270711v1_random          12332 17 +     42210 TTCAGTGAAACCTGGGC
s panTro4.chr1_GL389150_random         85855 17 +    113811 TTCAGTGAAACCTGGGT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354641 17 + 229942017 TTCCGTGAAACCTGGGT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263533 17 +    297174 TTCAGTGAAACCTGGGT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828386 17 + 227556264 TTCAGTGAAACCTGGGT
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016141 17 -   1280666 TTCAGTGAAACCTGGGT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s otoGar3.GL873592                   8641254 17 -   9938236 tgcaatttgaccagggc
i otoGar3.GL873592                 N 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707  0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631  0 +     19294 I
e tupBel1.scaffold_109258.1-256308     33215 4696 +    256308 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=50478.000000
s hg38.chr1_KI270711v1_random          12349 37 +     42210 CACATCTTTCACTGAGA-----GGTAGACAAGGGTGACACTT
s panTro4.chr1_GL389150_random         85872 37 +    113811 CACATCTTTCACTGAGA-----GGTAGACAAGGGTGACACTG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354658 37 + 229942017 CACATCTTCCACTGACA-----GGTAGACAAGGGTGACACTG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263550 37 +    297174 CACATCTTCCACCGAGA-----GGTAGACAAGGGTGACACTG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828403 37 + 227556264 CACATCTTCCACTGAGA-----GGTAGACAAGGGTGACACTG
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016158 37 -   1280666 CACATCTTCCACTGAGA-----GGTAGACAAGGGTGACACTG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s otoGar3.GL873592                   8641271 42 -   9938236 caggctccaacccgccacccttggtatatggggctggcgctc
i otoGar3.GL873592                 C 0 N 0
s tupBel1.scaffold_109258.1-256308     37911 37 +    256308 CAAAGCTATTAATAAAA-----GATACACAAGAAAACCACCC
i tupBel1.scaffold_109258.1-256308 I 4696 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707  0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631  0 +     19294 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=19950.000000
s hg38.chr1_KI270711v1_random          12386 13 +     42210 GCCTTGGGCAGGT
s panTro4.chr1_GL389150_random         85909 13 +    113811 GCCTTGGGCAGGT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354695 13 + 229942017 GCCTTGGGCAGGT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263587 13 +    297174 GCCTTGGGCAGGT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828440 13 + 227556264 GCCTTGGGCAGGT
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016195 13 -   1280666 GCCTTGGGCAGGT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s tupBel1.scaffold_109258.1-256308     37948 12 +    256308 -AAGTGGTCAGGC
i tupBel1.scaffold_109258.1-256308 C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e calJac3.chr18                     43914707  0 -  47448759 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631  0 +     19294 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=232058.000000
s hg38.chr1_KI270711v1_random          12399 138 +     42210 AAAGAACCACACAGACATGCTTTGGGAACAAAACTCATAAGGAATTTTGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGTCATGTGCTG----------------CATAGTTTGGTGTGAGCTTG-CCACA
s panTro4.chr1_GL389150_random         85922 138 +    113811 AAAGAACCACACAGACATGCTTTGGGAACAAAACTCATACGGAATTTTGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGTCACGTGCTG----------------CATAGTTTGGTGTGAGTTTG-CCACA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354708 138 + 229942017 AAATAACCACACAGATATGCTTTGGGAACAAAACTCATAAGGAACTTTGTAGCTGGCAAAAGACATTTAATTCAGATGAGCGGATCTGACAGACAACTCCTAGGCATGTGCTG----------------CATAGTTTGGTGTGAGTTTG-CCACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263600 138 +    297174 AAAGAACTCCACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTCGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGATAGACAACTCCTGGGCATGTGCTG----------------CAGAGCTTGGTGTGAGTTTG-CCACA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828453 138 + 227556264 AAAGAACCACACAGACATGCTTTGGGAACAAAACTCATAAGGAACTTAGTAGCTGGCAAGAGACATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTGGGCATGTGCTG----------------CAGAGCTTGGTGTGAGTTCG-CCACA
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016208 138 -   1280666 AGAGAACCACACAGACATGCTTGGGGAACGAAACTCATAAGGAACTTTATAGCTGGCAAGAGATATTTAATTCAGATGAGCTGATCTGACAGACAACTCCTAGGCATGTGCTG----------------CAGAGCTTGGTGTGAGTTTG-CCACA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3626160 129 +  47448759 AAAGAACCTCACAGACATGCCTGGGGAACAAAACTCATGAGGAACTTGGTAGCTGGCAAGAGACATTTAATTCAGAT---------TGACAGACAACTCGTGGGCATGTGCTG----------------CATAGCTTGGTGTGAGTTTG-CAACA
i calJac3.chr18                    I 3 C 0
s tupBel1.scaffold_109258.1-256308     37960 138 +    256308 AATGGATCTT-CAAACA----TTGGGTGTAAAATTAGCAAGA----CCATGGAAGGCAAGAGATG-TTACAACAGAAGAA-------GGTGGTCAAATTCTGTCCAAGTGCTGAGGCATGGAAATGATTCATAGGATACTGCTGCTCTGTTCACA
i tupBel1.scaffold_109258.1-256308 C 0 n 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631   0 +     19294 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=146679.000000
s hg38.chr1_KI270711v1_random          12537 91 +     42210 CCTGCCTTGAG-TTCAATGTCGTGACAGTCAGTCCAGGTTGGCACGGGCATGGCCTGAGACTAGGAAGAGAGCAAAGCTCACTCACCCACCC
s panTro4.chr1_GL389150_random         86060 91 +    113811 CCTGCCTTGAG-TTCAATGTCGTGACAGTCAGTCCAGGTTGGCACGGGCATGGCCTGAGACTAGGAAGAGAGCAAAGCTCACTCACCCACCC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354846 91 + 229942017 CCTGCCTTGAG-TCCAGTGTCCTGACAGTCAGTCCAGGGTGCCACAGGCATGGCCTGAGACTAGGAAGAGAGCAAAGCTCACCGATCTACCC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263738 91 +    297174 CCTGCCTTGAG-TTCAATGTCCTGACAGTCGATCCAGGGTGGCATGGGCATGGCCTGAGACTAGGAAGAGAGCCAAGCTCACTGACCCACCC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828591 91 + 227556264 CCTGCCTTGAG-TTCAATGTCTTgacagtcggtcaagggtggcaagggcatggcctgagaccaggaagagagcaaagctcactgacccacCC
i macFas5.chr1                     C 0 I 1
s chlSab2.chr20_KE148050v1_random    1016346 91 -   1280666 CTTGCCTTGAG-TTCAATGCCCTGAGAGTCGGTCAAGGGTGGCAAGGGCATGGCCTGAGACTAGGAAGAGAGCAAAGCTCACTGACCCACCC
i chlSab2.chr20_KE148050v1_random  C 0 I 1
s calJac3.chr18                      3626289 92 +  47448759 GCCGCCTTGGGTTTCAACGTCCTGACAGTTGGTCTAGGGTGCCACGGGCATGGACTGAGACTAGAGAGAGAGCAAAGCTCACTGAACCACCC
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631  0 +     19294 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=1000.000000
s hg38.chr1_KI270711v1_random          12628 1 +     42210 C
s panTro4.chr1_GL389150_random         86151 1 +    113811 C
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354937 1 + 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263829 1 +    297174 C
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s calJac3.chr18                      3626381 1 +  47448759 C
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631 0 +     19294 I
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I
e macFas5.chr1                     211828682 1 + 227556264 I
e chlSab2.chr20_KE148050v1_random    1016437 1 -   1280666 I

a score=63979.000000
s hg38.chr1_KI270711v1_random          12629 36 +     42210 ATGCCTGTGCTTCAGACTCGACTCCAGAGTGATTGA
s panTro4.chr1_GL389150_random         86152 36 +    113811 ATGCCTGTGCTTCAGACTCGACTCCAGAGTGATTGA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354938 36 + 229942017 ATGCCTGTGCTTCAGACTCGACTCCAGAGTGATTGA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263830 36 +    297174 ATGCCTGTTCTTCGGACTCGACTCCAGAGTGATTGA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828683 36 + 227556264 ATGCCTGTGCTTCAGACTCAACTCCAGAGTGATTGA
i macFas5.chr1                     I 1 C 0
s chlSab2.chr20_KE148050v1_random    1016438 36 -   1280666 ATGCCTGTGCTTCAGACTCAACTCCAGAGTGATTGA
i chlSab2.chr20_KE148050v1_random  I 1 C 0
s calJac3.chr18                      3626382 36 +  47448759 ATGCCCATGCTTCAGACTGGAATCCGGAGTGATTGA
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631  0 +     19294 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e papAnu2.chr1                     201381510 724 - 220367699 M
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=931922.000000
s hg38.chr1_KI270711v1_random          12665 414 +     42210 AATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAAATCTCAGCCCAACAAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGCCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACCGCCTATGTCAACAGCC-ATGCAGACTTGCTGTTCCTCTAATGAGTGAAATGTGCCGCTGTAAGACTGGTACGAGGCCAACATTTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTGGGGGACTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGATAGAAGATTTAACCAACAGACATTAGACAACAAAACCTCCCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
s panTro4.chr1_GL389150_random         86188 414 +    113811 AATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAAATCTCAGCCCAACAAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGCCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAACAGCC-ATGCAGACTTGCTGTTCCTCTAATGAGTGAAATGTGCTGCTGTAAGACTGGTACGAGGCCAACATTTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTGGGGGACTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATTTAACCAACAGACATTAGACAACAAAACCTCCCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107354974 414 + 229942017 AATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAACTCTCAGCCCAACAAGGGGCACAAGGCCCAAAGACTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCTGACTTGCTGTTCCTCTAATGAGTGAAAGGTGCTCCTGTAAGACTGGTACGAGGCCAACATCTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTGGGGGGCTTCTTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGAGATGATAGAAGATTTAACCAACAGAGATGAGACAACAAAACCTCCCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     263866 414 +    297174 AATCTACATTGATATATAGGTTCAGCCCACAGTGATGGCAACTCTCAGCCCAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACTTTCACAATGGAGTACTCACTGCCTACGACAAGAGCC-AAACCGACTTGCTGTTCCTCTAATGAGTGAAAGGTGCTCCTGTAAGACTGGTACGAGGCTGACTTGTCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCTAGAACTCCTGAGGGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATTTAACCAATAGAGATTAGACAACAAAACCTCCCAGATGTTCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211828719 413 + 227556264 AATCTACATTGATATATAGGTTTGGGCCACAGTGATGGCAACTCTCAGCTCAGCCAGGGGTACAAGGCCCAAAGATTATGGGGTCTACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAAGAGCC-AAGCCGACCTGCTGTTCCTCTAATGAGGGAAAGGTGCTCTTGTAAGACTGGTACGAGGCAGACATATCAGGAGGAATTGAGAGAGTCGAATAACCTTCATCCCAAGACTCCTGG-GGGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATTAAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGACAGAATGGAGTGGTCACAGAAACCAAAGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382234 414 - 220367699 AATCTACATTGATATATAGGTTAAACCCACAGTGATGGCAACTCTTAGCCCAACCATGGGCGGAAAGCCCCAAGATTACGGGGTCTACTTGGGACATGACCTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCCACGTCAAGAGCC-AAGTCGACTTGTTGTTCCTCTAATGAGTGAAAGGTGCTGCTGTAAGACTGGTATGAGGCAGACATGTCAGGAGGAACTGAGGGAGTCGAATAACCTTCATCCCAGGATTCCTGGAGAGCTTCCTCCTCTTCAGACTCCTGCAGATTCCTGATGACACAGGCAGGACAGGGATGACAGAAGATTTAACCGACAGAGATTAGGCAACAAAACCTCCCAGATGATCTGATGGGAGGCAGAATGGAGTGGTCACAGAAACCAAAGC
i papAnu2.chr1                     M 724 C 0
s chlSab2.chr20_KE148050v1_random    1016474 415 -   1280666 AATCTACACTGACATATAGGTTCAGCCCACAGTGATGGCAACTCTCAGCCCAACCAGGGGCACAAGGCCCAAAGATTATGGGGTCCACCTGGGACATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATGTCAACAGCCAAAGCTGACTTGCTGTTCCTCTAATGAGTGAAAGGTGGTCTTGTAAGACTGGTACAAGGCAGACATGTCAGGAGTAATTGAGAGAGTCGAATAACCTTCATCCCAGGACTCCTAGGGGGCTTCCTCCTCTTCAGACTCCTACAGATTCCTGATGAGCCAGGCAGGACAGAGATGACAGAAGATTTAACCAACAGAGATTAGACAACAAAACCCCCCAGATGATCTGATGGGAGAGAGAATGGAGTGGTCACAGAAACCAAAGG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3626418 414 +  47448759 AATCTGCACTGATGGATAGGCTCAGCCCACAGTGATGACAACTCTCAGCACGGCCAGGGGAGCAATACACAAAGACTATGGGGTCTATCTGGGACACAAAGTGGAGCTTTACCACTTTCACAACAGAGTACTCACTGTCTGTGTCATGAGCC-AAGTTGACCTGCTGTTCCTCTAATGAGTGCAAGTTGGTCCTGTAAAGCTCATTGAAGGCAAATGTGCCAGGAGGAATTGAGAGAGTCGAATCATCTTCATCCCAGGACTCCTGGGTGGCTTCCTCCTCCACAGACTCCTGCAGATTCCTGATGAGCCAGGCAGGACAGGGATGACAGAAGATTAAACCAACACGGATTAGACAACAAAGTCTCCCAGCTGATCTGATGGAAGTCAGAATGGAGTGGTCACAGAAAGCAAAGG
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110450863 3462 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631   0 +     19294 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=3600.000000
s hg38.chr1_KI270711v1_random          13079 1 +     42210 C
s panTro4.chr1_GL389150_random         86602 1 +    113811 C
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355388 1 + 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264280 1 +    297174 C
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829132 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382648 1 - 220367699 C
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016889 1 -   1280666 C
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s nasLar1.chr1                     110454325 1 - 215897965 C
i nasLar1.chr1                     I 3462 I 215
s calJac3.chr18                      3626832 1 +  47448759 C
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631 0 +     19294 I
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=35875.000000
s hg38.chr1_KI270711v1_random          13080 16 +     42210 ATTTTTCCTTCAAGAG
s panTro4.chr1_GL389150_random         86603 16 +    113811 ATTTTTCCTTCAAGAG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355389 16 + 229942017 ATTTTTCCTTCAAGAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264281 16 +    297174 ATCTTTCCTTCAAGAG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829133 16 + 227556264 ATTTTTCCTTCAAGAG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382649 16 - 220367699 AGTTTTCCTTCAacgg
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016890 16 -   1280666 ATTTTTCCTTCAAGAG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3626833 16 +  47448759 CTTTTTCCTTCAAGAG
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110454326 215 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tarSyr2.KE951269v1                   10631  0 +     19294 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=7271.000000
s hg38.chr1_KI270711v1_random          13096 3 +     42210 AAA
s panTro4.chr1_GL389150_random         86619 3 +    113811 AAA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355405 3 + 229942017 AAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264297 3 +    297174 AAA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829149 3 + 227556264 AAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382665 3 - 220367699 aaa
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016906 3 -   1280666 AGA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3626849 3 +  47448759 AAA
i calJac3.chr18                    C 0 C 0
s tarSyr2.KE942660v1                  473319 3 -    507792 ATA
i tarSyr2.KE942660v1               I 3955 N 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110454326 215 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=433495.000000
s hg38.chr1_KI270711v1_random          13099 197 +     42210 TAAAACTAGC-CTTCTAAATACAGGGTGGAGGGTGACTGCTCTGGGGACAGAGCAAAAATGGGCAGCATGTGCTCAGTACATTTGCCACAGATGAGCCAACTCAGGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCACAGAGAACTGACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
s panTro4.chr1_GL389150_random         86622 197 +    113811 TAAAACTATC-CTTCTAAATACAGGGTGGAGGGTGACTGCTCTGGGGACAGAGCAAAAATGGGCAGCATGTGCTCAGTACATTTGCCGCAGATGAGCCAACTCAGGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCACAGAGAACTGACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355408 197 + 229942017 TAAAACTATC-CTTCTAAATGCAGGGTGGATGGTGACTGCTCTGGGGACAGAGCAAAAATGGGCAGCATGTGCTCAGTACATTCGCCACAGATGAGCCAACTCAGGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCACAAAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTGGAAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264300 197 +    297174 TAAAACTGTC-CTTCTAAATGCAGGGTAGAGGGTGTCTGCTCTGGGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTACATTTGCCACAGATGAGCCAATGTAGGGCACCCAGAATCTCCCTGTAAACTACCATCATGACTTGCAGCACAGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829152 197 + 227556264 TAAAACTATC-CTTCTAAATGCAGGGTGGAGGATGACTGCTTTGGGGACCGAACAAAAATGGGCAGCACATGCTCAATATATTTGCCACAGATGAGCCAACGCAAGGCACCCAGACTCTCCCTGTAAACTACCATCATGACTTGCAGCACAGAGAACTAACACAGGGCTTCAACTACTTTGCATAAATTGGGTTGAAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382668 196 - 220367699 taaaaatatt-cttctaaatGCAGGGCAGAGGGTGACTGCCCTGGGGAATGACCAAAAATGGGCTACACGTGCTCAGTACACTTGCCAGAGATGAGCCAATGTAGGGCACCCCTACTCTCCCTGTAAACTACCCTCATGACTTGCAGCACAGAG-ACTAACACAAGATTTCAACTACTTTGCATAAATTGCGTTGAAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1016909 197 -   1280666 TAAAACTATC-CTTCTAAATGGAGGGTGGAGGGTGACTGCTCTGGGGACAGAGCAAAAATGGGCAGCACGTGCTCAGTATATATGCCACAGATGAGCCAACGCAGGGCACCCAGACTCTCCCTGTAAACTACTGTCATGACTTGCAGCACAGAGAACTAACACAGGGTTTCAACTACTTTGCATAAATTGGGTTGAAT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3626852 197 +  47448759 AAAAACTATCGCTTCTAAATGCAGGGTGGAGGGTGACTGCCCTGGGGACAGAGAACAAATGAGCAGCATGTGCTCAGTGCATGTGCCACAGATGAGCCACTGCAGGCCACACAGACTCTCCCTGTAAACTCTCATCACGACTTGCAGCAC-GAGAACTAACACGGGGCTTCAACCACCTCGCGTAAGTTGTGTTGAAT
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e nasLar1.chr1                     110454326 215 - 215897965 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=3276.000000
s hg38.chr1_KI270711v1_random          13296 1 +     42210 T
s panTro4.chr1_GL389150_random         86819 1 +    113811 T
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355605 1 + 229942017 T
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264497 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829349 1 + 227556264 T
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382864 1 - 220367699 T
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1017106 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s nasLar1.chr1                     110454541 1 - 215897965 T
i nasLar1.chr1                     I 215 N 0
s calJac3.chr18                      3627049 1 +  47448759 T
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=204631.000000
s hg38.chr1_KI270711v1_random          13297  98 +     42210 TTACATGCAGCATTCAAGTGAAGAGAGTTCTTGACGCAGTGCAGACA--CAGATCTTGTGTATTAAGGGCCCCATTTTCCCAATATTTTGATATAATATA
s panTro4.chr1_GL389150_random         86820  98 +    113811 TTACATGCAGCATTCAAGTGAAGAGAGTTCTTGACGCAGTGCAGACA--CGGATCTTGTGTATTAAGGGCCCCATTTTCCCAATATTTTGATATAATATA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355606  98 + 229942017 TTACATGCAGCATTCAAGTGAACAGAGCTCTTGACACAGTGCAGACA--CACATCTTTTGTATTAAGGGCCCCATTTTCCCAATATTTTGGTATAATATG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264498  98 +    297174 TTACATGCAGCATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CAGATCTCACATATTAAGGGCCCCATTTTTCCAATATTTTGATATAATATT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829350  98 + 227556264 TTGCATGCGACATTCAAGTGAACAGAGCTCTTGAGGCAGTGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATTTTTCCAATATTTTGATATAATATG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382865  98 - 220367699 TTCCTTACAGCATTCAAGTGAACAGAGCTCTTGCGGCAGTGCAGACA--CAGATCTTGTGTGCTAAGGGCCCCATTTTCCCAATATTTTGAtagaatatg
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1017107  98 -   1280666 TTGCACGTGGCATTCAAGTGAACAGAGCTCTTGAGGCAGCGCAGACA--CACAGCTTGTGTATTAAGGGCCCCATTTTTCCAATATTTTGATATAATATG
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3627050 100 +  47448759 TTACATGCGGCATTCAAGTGGATACAGCTCTTGAGGCACTTCAGACACCCAGATCTGGTGTATTAAGGGCCTCCTTTTTCCAGTATTTTGATATAATATG
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e gorGor3.chr1                     104472457 62085 - 229507203 I

a score=304551.000000
s hg38.chr1_KI270711v1_random          13395 120 +     42210 TTTACCTTTTCAATTTCTTTTCTTGCAAAAATACTAGCCAACATACTACCAACGAATAGGAAGAAAGCATATATACA-TCTCTCCCTGGATTTAAACACATGGGAGAGAATAGGCAACACC
s panTro4.chr1_GL389150_random         86918 120 +    113811 TTTACTTTTTCAATTTCTTTTCTTGCAAAAATACTAGCCAACATACTACCAACAAATAGGAAGAAAGCATATATACA-TCTCTCCCTGGATTTAAACACATGGGAGAGAACAGGCAACACC
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104534542 120 - 229507203 TTTACTTTTTCAATTTCTTTTCTTGCAAAAATACTAGCCAACATACTACCAACAAATAGGAAGAAAGCATATATACA-CCTCTCCCTGGATTTAAACACATGGGAGAGAATAGGCAACACC
i gorGor3.chr1                     I 62085 I 1023
s ponAbe2.chr1                     107355704 120 + 229942017 TTTACTTTTTCAATTTCTTTTCTTGCACAAATACAAGCAAACATACTACCAACAAATGGGAAGAAAGCATATATACA-TCTCTCCCTGGATTTAAACACATGGGAGAGAATAGGCGACACC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264596 120 +    297174 TTAATTTTTTCCATTTCTTTTCTTGCACAAATACTAGCAAACATACTAACAAAAAATGGGCAGATAGCCTATATACA-TCTCTCCCTGGATTTAAACACATGGGAGAGAACAGGCAACACC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829448 120 + 227556264 TTTATTTTTCCAATTTCTTTTCTTGCACAAATACTAGCAAACATACTAACAACAAATAGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAACACATGGGAGAGAACAGGCAACACC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201382963 108 - 220367699 tttattttttcagtttcttttcttgcaCAAATACTGGAAAACATAC-------------GCAGAAAGCATAGGTACATTCTCTCCCTGGATTTAAACGCAGGGGACAGAACAGGCAACACC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1017205 120 -   1280666 TTTATTTTTCCAATTTCTTTTCTTGCACAAATACTAGCAAACATACTAACAACAAATGGGCAGAAAGCATATATACA-TCTCTCTCTGGATTTAAATACCTGGGAGAGAACAGGTGACACC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3627150 119 +  47448759 TCTATGTTGTGAATTTCTTCTGTT-CACAAATCCTAGCAAACACACTCACAACAAATGGGCAGAACGCATATATGTG-TCTCTCCCTGGGTTTAAACACAGTGGGGAGAACAGGCAAAACC
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I

a score=17234.000000
s hg38.chr1_KI270711v1_random          13515 7 +     42210 AAGAAAT
s panTro4.chr1_GL389150_random         87038 7 +    113811 AAGAAAT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355824 7 + 229942017 AAGAAAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264716 7 +    297174 AAGAAAT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829568 7 + 227556264 AAGAAAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201383071 7 - 220367699 AAGAAAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1017325 7 -   1280666 AAGAAAT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3627269 7 +  47448759 AGGAAAT
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e gorGor3.chr1                     104534662 1023 - 229507203 I

a score=915074.000000
s hg38.chr1_KI270711v1_random          13522 550 +     42210  
s panTro4.chr1_GL389150_random         87045 550 +    113811  
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107355831 546 + 229942017  
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     264723 551 +    297174  
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211829575 551 + 227556264  
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201383078 551 - 220367699  
i papAnu2.chr1                     C 0 I 2072
s chlSab2.chr20_KE148050v1_random    1017332 551 -   1280666  
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e gorGor3.chr1                     104534662 1023 - 229507203 I

a score=528407.000000
s hg38.chr1_KI270711v1_random          14072 445 +     42210 atcagtgattcaagatcaaattagtgaaatgaagcgagaagagaagtttagag---aaaaaagagtaaaaagaaatgaac-aagcctccaataaatatgggactatgtggaaagaccaaatctacgtttgattggtgca-ctgaaagtgacggggagaatggaaccaagctgggaaacattcttcaggatattatccaggaggacttccccaaccttgtaaggaaggccaacattcaaattcaggaaacacagagaacaccataaagatactcctcgagaagagcaaccccaaaacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgctaagtgcagccagagagaaaggtcggattacccacaaagggaagcccatcagactagcagcagatctcttggcacaaaccctacaagccagaagagagtgggag-caata
s panTro4.chr1_GL389150_random         87595 446 +    113811 atcagtgattcaagatcaaattagtgaaatgaagcgagaagagaagtttaggg---aaaaaagagtaaaaagaaatgaac-aagcctccaataaatatgggactatgtggaaagaccaaatctacgtttgattggtgtacctgaaagtgacggggagaatggaaccaagctgggaaacactcttcaggatattatccaggagaacttccccaacctagcaaggaaggccaacattcaaattcaggaaacacagagaacaccataaagatactcctcgagaagagcaaccccaaaacacgtaattgtcagattcaccaaggttgaaatgaaggaaaaaatgctaagggcagccagagagaaaggtcggattacccacaaagggaagcccatcagactagcagcagatctcttggcacaaaccctacaagccagaggagagtgggag-caata
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107356377 445 + 229942017 atcagtgattcaagatcaaattaatgaaatgaagcgagaagagaagtttagag----aaaaagagtaaaaagaaatgaac-aagcctccaataaatatgggactatgtgaaaagaccaaatctacatttgattggtgtacctgaaagtgacggggagaatggaaccaagctgggaaacattcttcaagatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaacacagagaacaccacaaagatactccttgagaagagcaactccaagacacataattgtcagattcatcaaggttgaaatgaaggaaaaaatgctaagggcagccagagagaaaggtcggattactcacaaagggaagcccatcagactagcagcagatatctcggcagaaaccctacaagccagaagagagtggcag-caata
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     265274 448 +    297174 atcagtgattgaagatcaaattaatgaaatgaagtgagaagagaattttagag--aaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaaggccaaatctacatttgattggtgtacctgaaagtgacggggagaatggaaccaagctggaaaacacttttcggaatattatccagcagaacttccccaacctagcaaggcaggccaacattcaaattccggaaatacagagaacaccacaaagatactcctcgagaaaagcaactccaagacacataattgtcagattcaccaaagttgaaatgcaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaa-ggaagcccatcagactaacagcagatttcttggcagaaaccctacaagctacaagagagtgggggccaata
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211830126 448 + 227556264 atcagtgattgaagatcaaattaaggaaatgaagcaagaagagaaggttagag---aaaaaagagtaaaaagaaatgaacaaagcctccaacaaatatgggactatgtgaaaagaccaaatctacatttggttggtatacctgaaagtgacagggagaatggaaccaagctggaaaacactctacaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaataaagagaacaccacaaagatactcctcgagaagagcaacctcaagatacataattgtcagattcaccaaggttgaaatgaaggaaaaactgctaagggcagccagagagtaaggtccggttacccacaaagggaagcctatcagactaacagtggatctctcggcagaaaccctacaagccagaagagagtggagaccaata
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1017883 435 -   1280666 atctgtgattgaagatcaaatgaatgaaatgaagcaaaaagagaagtttagaggaaaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggattatgtgaaaagaccaaacctacatttgattggtatacgtgaaagtgacagggagaatggaaccaagttggaaaacac--------------tccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacactacaaagatactcctcgagaagagcaatcccaagaatcaaaattgtcagattcaccaaggttgaaatgaaggaaaaaatgctaaaggcagccagaga--aaggctgggttacccacaaagggaagtccatcagactaacagcaaatctctcggcagaaaacctacaagccagaagagagtggtggccaata
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104534662 1023 - 229507203 I

a score=5775.000000
s hg38.chr1_KI270711v1_random          14517 11 +     42210 ttcaacattct
s panTro4.chr1_GL389150_random         88041 11 +    113811 ttcaatattct
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107356822 11 + 229942017 ttcaacattct
i ponAbe2.chr1                     C 0 C 0
s macFas5.chr1                     211830574 11 + 227556264 ttcaacattct
i macFas5.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276  0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104534662 1023 - 229507203 I
e chlSab2.chr20_KE148050v1_random    1018318  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random     265722  0 +    297174 C

a score=1446.000000
s hg38.chr1_KI270711v1_random          14528 10 +     42210 tttttttttt
s panTro4.chr1_GL389150_random         88052 10 +    113811 tTTTTTTTTT
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107356833  8 + 229942017 tttttttt--
i ponAbe2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276  0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104534662 1023 - 229507203 I
e macFas5.chr1                     211830585  0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1018318  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random     265722  0 +    297174 C

a score=38.000000
s hg38.chr1_KI270711v1_random          14538 1 +     42210 c
s panTro4.chr1_GL389150_random         88062 1 +    113811 C
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104535685 1 - 229507203 t
i gorGor3.chr1                     I 1023 I 8083
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276 0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e ponAbe2.chr1                     107356841 0 + 229942017 C
e macFas5.chr1                     211830585 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1018318 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random     265722 0 +    297174 C

a score=57595.000000
s hg38.chr1_KI270711v1_random          14539 284 +     42210 catatgtatagttttcctttattattttttgtgtgtatgtatatatatgtatatatattttttaatactttaagtcttagggtacatgtgcacaacgtgcagg-ttagttacatatgtatacatgt-ccacattggtgtgcttca-cccattaactcatcatttaacattaggtatatctcctaatgctacccctcctccctccccacaccctacaacaggccccagtgtgtgatgttcc-ccttcctgtgtccatgtg-ttctcattgttcaattcccac-ctgtgagt
s panTro4.chr1_GL389150_random         88063 287 +    113811 CATATGTATAGttttcctttattattttttgtgtgtatgtatatatatatatatata--ttttaatactttaagtcttagggtacatgttgcccacgtgcaggtttagttaaatatgtacacatgt-cctcattggtgtgcttcaccccattaattcatcctttattattaggtatttttcctaatgctaaccctcctctctccccctaccctacaagaagccctattgtgggatgttcctctttcctgtgtccttgtgtttctcattgttccatttccactctgtgagt
i panTro4.chr1_GL389150_random     C 0 I 105
s ponAbe2.chr1                     107356841 281 + 229942017 cacatgtatagttttcctttattattttt----tgtatatatacatacatatatatattttttaatactttaagtcttagggaacatatgcacaacatgcagg-ttagttacatatgtatacatgtggaacactggtgtgcttca-cccattaaatcatcatttaacattaggtatatctcctaatgctacgcctcccccctccccccaccctacaacaggccccggggtgtgatgttcc-ccttcctgtgtccatgtg-ttctcattgttcaattcccac-ctatgagt
i ponAbe2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104535686 8083 - 229507203 I
e macFas5.chr1                     211830585   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1018318   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random     265722   0 +    297174 C

a score=17527.000000
s hg38.chr1_KI270711v1_random          14823 206 +     42210 aagaacatgcggtacttggctttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgcccctacaaaggacatgaactcatcattttttatagctgcatagtattccatggtgtacacgtgccacattttcttaatccagtctatcattgctggatatttggcttggttccaagtctttgctattgtgaa
s ponAbe2.chr1                     107357122 206 + 229942017 gagaacatgcagtatttggtttttggtccttgcaatagtttgctgagaatgacggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatagctgtatagtattccatggtgtatatgtgccacattttcttaatgcagtctatcattgttggacatttggcttggttccaagtctttgctattgtgaa
i ponAbe2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104535686 8083 - 229507203 I
e macFas5.chr1                     211830585   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1018318   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random     265722   0 +    297174 C
e panTro4.chr1_GL389150_random         88350 105 +    113811 I

a score=57938.000000
s hg38.chr1_KI270711v1_random          15029 218 +     42210 tagtgccgcaataaacatatgtgtgcatgtgtctttacagcagcatgatttataatcctttgggtatacacccagtaatgggatggctgggtcaaatgctatttctagttctagatccctgaggaattgccacactgccttccacaatcgttgaactagtttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatc
s panTro4.chr1_GL389150_random         88455 218 +    113811 tagtgccgcaataaacatatgtgtgcatgtgtctttacagcagcatgatttataatcctttgggtatacacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaattgccacactgccttccacaatcgttgaactagtttacactcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatc
i panTro4.chr1_GL389150_random     I 105 C 0
s ponAbe2.chr1                     107357328 218 + 229942017 tagtgccgcaataaacatatgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttgtagatccctgtggaattgccaaactgccttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgtctctatttctccacatcctctccagcatc
i ponAbe2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104535686 8083 - 229507203 I
e macFas5.chr1                     211830585   0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1018318   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random     265722   0 +    297174 C

a score=10280.000000
s hg38.chr1_KI270711v1_random          15247 11 +     42210 ttcaacattct
s panTro4.chr1_GL389150_random         88673 11 +    113811 ttcaacattct
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107357546 11 + 229942017 ttcaacattct
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     265722 11 +    297174 ttcaacattct
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s chlSab2.chr20_KE148050v1_random    1018318 11 -   1280666 ttcaacattct
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276  0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104535686 8083 - 229507203 I
e macFas5.chr1                     211830585  0 + 227556264 C

a score=916509.000000
s hg38.chr1_KI270711v1_random          15258 739 +     42210  
s panTro4.chr1_GL389150_random         88684 739 +    113811  
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107357557 739 + 229942017  
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     265733 742 +    297174  
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211830585 749 + 227556264  
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1018329 740 -   1280666  
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I
e gorGor3.chr1                     104535686 8083 - 229507203 I

a score=545730.000000
s hg38.chr1_KI270711v1_random          15997 308 +     42210 acagaagctttacaaggatatccaggacttgaactcagctctccaccaagcagacctaaaagacatctacagaactctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatagttggaggtaaagcactcatcagcaaatgtaaaagaatggaaaccacaacaaactg----tcagaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaaccgcacaactacatggaaactgaacaacctgctcctgaatgactactggga
s panTro4.chr1_GL389150_random         89423 308 +    113811 acagaagcttaacaaggatatccaggacttgaactcagctctccaccaagcagacctaaaagacatctacagaactctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatagttggaggtaaagcactagtcagcgaacgtaaaagaatggaaaccacaacaaactg----tcagaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaaccgcacaactacatggaaactgaacaacctgctcctgaatgactactggga
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104543769 308 - 229507203 acagaagcttaacaaggatatccaggacttgaactcagctctccaccaagcagacctaaaagacatctacagaactctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattcaccacatagttggaggtaaagcactcgtcagcaaatgtaaaagaatggaaatcacaacaaactg----tcagaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaaccacacaactacatggaaactcaacaacctgctcctgaatgactactggga
i gorGor3.chr1                     I 8083 C 0
s ponAbe2.chr1                     107358296 308 + 229942017 acagaagcttaacaaggatatccaggactggaactcagctctacaccaagcggacctaaaagacatctacagaactctccaccccaaatcaacagaatatacattcttctcagcagcacatcacacttattccaaaattgaccacatagttggaggtaaagcactcctcagcaaatgtaaaagaatagaaatcacaacaaactg----tcagaccacagtgcaatcaaattagaactcgggattaagaaactcactcaaaagctcacaactacatggaaactgaacaatctgctcctgaatgactactgggt
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     266475 312 +    297174 acagaagcttaacaaggatatccaggacttgaactcagctctgcaccaagcagacctaataaacacctacagaactctccaccccacatcaacagaatatacactcttctcagcaccacatcacacttattccaaaattggccacatagttggaagtaaagcactcctcagtgaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaactgtgcaactacatggaaactgaacaatctgctcctgaatgactactgggt
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211831334 312 + 227556264 acagaaacttaataaggatatccaggacttgaactcatttctgcaccaagcagacctaatagacatctatagaactctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatatttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaactgtttcttacaccacagtgcaatcaaattagaactcaggattaagaaactcactcaaaactgtacaactacatggaaactgaacaacctgctcctgaatgactactgggt
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1019069 312 -   1280666 acagatgcttaacaaggatatccaggaactgaactcagttctgcaccaagcagacctaatagacatctacagaactctccaccccacatcaatggaatatacattcttctcagcaccacatcacacttattccaaaattgaccacatagttggaagtaaagcactcctcagaaaatgtaaaagaacagaaatcacaacaaactgtctctcagaccacagtgtaatcaaattagaactcaggataaagaaactcactcaaaaccgcacaactgtgtggaaactgaacaacctgcttctgaatgactactgggt
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e rheMac3.chr1                      94861140 2018 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I

a score=594644.000000
s hg38.chr1_KI270711v1_random          16305 254 +     42210 aaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacatttaaagcaatgtgtagagggaaaattatagcactaaatgcccacaagagaaagcagaaaagatctaaaattgacaccctaacatcacaattaaaataactagagaagc-aaa-gcaaacaaattcaaaagctagcagaagacaaga---agtaactaagatcagagcagaact
s panTro4.chr1_GL389150_random         89731 254 +    113811 aaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacatttaaagcaatgtgtagagggaaaattatagcactaaatgcccacaagagaaagcagaaaagatctaaaattgacaccctaacatcacaattaaaataactagagaagc-aaa-gcaaacaaattcaaaagctagcagaagacaaga---agtaactaagatcagagcagaact
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104544077 254 - 229507203 aaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacatttaaagcaatgtgtagagggaaaattatagcactaaatgcccacaagagaaagcagaaaagatctaaaattgacaccctaacatcacaattaaaataactagagaagc-aaa-gcaaacaaattcaaaagctagcagaagacaaga---agtaactaagatcagagcagaact
i gorGor3.chr1                     C 0 C 0
s ponAbe2.chr1                     107358604 253 + 229942017 aaataacaaaattaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacgtaccagaatctctgggacacatttaaagcagtgtgtagagggaaaattatagcactaaatgcccaaaagagaaagcagaaaaggtctaaaatcgacaccctaacatcacaattaaaagaactagagaagc-aag-gcaaacaaattcaaaagctagcagacaacaaga---aataactaagatcagagcagaac-
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     266787 255 +    297174 aaataacgaaatgaagatggaaacaaagatgttatttgaaaccaatgagaacgaagacacaacgtaccagaatctctgggacacatttaaagcagcgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcgaga-gcaaacacattcaaaagctagcagaaggcaaga---aataactaagatcagagtagaact
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94863158 254 + 229590362 AAataacaaaatgaaggcagaaataaagatgttctcagaaaccaatgggaacaaagacacaatgtatcagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacaccctaacatcacaattaaaagaactagagaagc-aag-gcaaacaaattcaaaagctagcagaagacaaga---aatgactaagatcaaagcagaact
i rheMac3.chr1                     I 2018 C 0
s macFas5.chr1                     211831646 255 + 227556264 acataacgaaatgaaggcagaaataaagatgttctttagaaccaatgagaacaaagacacaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaatgaaaagaactagagaagc-aagaggaaacaaattcaaaagctagcagaagacaaga---aataactaagctcacagcagaact
i macFas5.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1019381 257 -   1280666 aaataacaaaatgaaggcagaaataaagatgttctttggaaccaatgagaacaaagacacaacataccacaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcgctaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaatatcacaattaaaagaactagagaagc-aag-gcaaacaaattcaaaagctagcagaagacaataaataataacgaagaccagagcagaact
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276   0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e papAnu2.chr1                     201383629 2072 - 220367699 I

a score=177573.000000
s hg38.chr1_KI270711v1_random          16559 79 +     42210 aaaggagatagagac-acaaaaaacccttc-aaaa--aat--caatgaatccagg-gctgg-ttttttgaaaagatcaacaagaAAA
s panTro4.chr1_GL389150_random         89985 79 +    113811 aaaggagacagagac-acaaaaaacccttc-aaaa--aat--caatgaatccagg-gctgg-ttttttgaaaagatcaacaagaAAA
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104544331 79 - 229507203 aaaggagatagagac-acaaaaaacccttc-aaaa--aat--caatgaatccagg-gctgg-ttttttgaaaagatcaacaagaAAA
i gorGor3.chr1                     C 0 C 0
s ponAbe2.chr1                     107358857 72 + 229942017 aaaggag---------acaaaaaatccttc-aaaa--aat--caatgaatccaggagctgg-ttttttgaaaagatcaacaagaAAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     267042 81 +    297174 gaaggaaatagagac-acaaaaaactcttcaaaaa--aat--caatgaatccaggagttcg-ttttgtgaaaagatcagcaagaAAT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94863412 83 + 229590362 aaaggagatagagacacaaaaaaacccttc-aaaaagaat--caatgaatccaggagctgg-ttttctgaaaagatcaacaagaAAA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211831901 81 + 227556264 aaaggagatagagac-ccaaaaaacccttc-aaaa--aat--cagtgaatccagtagatgatttttttgaaaagatcaacaagaAAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201385701 78 - 220367699 aaaaaaaacaaaaaa-caaaaaaa-------aaaaaaaaccacaatgaatccaggagctgg-ttttttgaaaagatgaacaagatAT
i papAnu2.chr1                     I 2072 C 0
s chlSab2.chr20_KE148050v1_random    1019638 81 -   1280666 aaaggagatagagacacaaaaaaacccttc-aaaa--aat--cagtgaatccaggagctgg-ctttttgaaaagatcaacaagaAAA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627276  0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I

a score=343440.000000
s hg38.chr1_KI270711v1_random          16638 101 +     42210 CCCTGTTTGGCTAGTTCACCTGGCTCATCTGATGGCAAGTTCCTATCTTGAGAGGACTATGAAATTAAAACCAATACAAGTGCCACAAATAACATACAACA
s panTro4.chr1_GL389150_random         90064 101 +    113811 CCCTGTTTGGCTAGTTCACCTGGCTCATCTGATGGCAAGTTCCTATCTTGAGAGGACTATGAAATTAAAACCAATACAAGTGCCACAAATAACATACAACA
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104544410 101 - 229507203 CCCTGTTTGGCTAGTTCACCTGGCTCATCTGATGGCAAGTTCCTATCTTGAGAGGACTATGAAATTAAAACCAATACAAGTGCCACAAATAACATACAACA
i gorGor3.chr1                     C 0 C 0
s ponAbe2.chr1                     107358929 101 + 229942017 CCCTGTTTGGCTAGTTCACCTGGCTCATCTGATTGCAAGTTCCTATCTTGAGAGGACTACGAAATTAAAACCAATACAAGGGCCACAAATAACGTACAACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     267123 101 +    297174 CCCTATTTGGCTAGTTCACCTGGCTCATCTGATTGCAAGTTCCTATCTTGACAGGACTACAAAATTAAAACCAATACATGGGCCACAAATAACACACAACA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94863495  98 + 229590362 CCCTGTTTGGCTAGTTCATCTGGCTCATCTGATTGCAAGTTCCTATCTTGAGAGGACTATGAAATTAAAACCAATACAAGTGCCACAAATCACAC---ACA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211831982 101 + 227556264 CCCTGTTTGTCTCATTCATCAGGCTGATCTGATTGCAAGTGCCTATATTGAGAGGACTATGAAATTAAAACAAATACAAGTGCCACAAATAACACACAACA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201385779 101 - 220367699 CCCTCTTTGGCTAGTTCACCTGGCTCAACTGATTGCAAGTACTTATCTTGACAGGACTATGAAATTAAAACCAATACAAGTGCCACAAATAATGCACAACA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1019719 101 -   1280666 CCCTGTTTGGCTCATTCACCTGGCTCATCTGATTGCAAGTGCCTATACTGAGAGGACTACGAAATTAAAACCAATACAGGTACCACGAATAACACACAACA
i chlSab2.chr20_KE148050v1_random  C 0 C 0
s calJac3.chr18                      3627276 101 +  47448759 CCCTGTTTGCTGAGTTCACCTGGCTCATCTGATTGCAGGTTCCCATCTTGGGAGGAGTCAGAAATTAAAATCTATACACGTGCCACAAATCACCCACAACA
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I

a score=1301416.000000
s hg38.chr1_KI270711v1_random          16739 456 +     42210 TTGTAAATCAGCACAATTTGTAGCTGGGTGAATGGAAGAAATAGTTCTATTCATCACTTCCTCATTTTCCCTAAATCTACAATCTCCAGATGTCACTACTGAATTAACAGCCAACAATTCCACAACATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGTCACATTAAGCAATTCATACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAAGGATTCTGACAGGAATATTCTAGGGTGCCCTAGATTAACTTTGGTGAGAATTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACGTGTACACCATAATGCCAT-ATTCCCTGCCTGAGT-----C----AAAGTTAAACAAAATTTTTTCCCCAAAAA
s panTro4.chr1_GL389150_random         90165 453 +    113811 TTGTAAATCAGCACAATTTGTAGCTGGGTGAATGGAAGAAATAGTTCTATTCATCACTTCCTCATTTTCCCTAAATCTACAATCTCCAGATGTCACTACTGAATTAACAGCCAACAATTCCACAACATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCA---CTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGTCACATTAAGCAATTCATACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAAGGATTCTGACAGGAATATTCTAGGGTGCCCTAGATTAACTTTGGTGAGAATTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACGTGTAGACCATAATGCCAT-ATTCCCTGCCTGAGT-----C----AAAGTTAAACAAAATTTTTTCCCCAAAAA
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104544511 456 - 229507203 TTGTAAATCAGCGCAATTTGTAGCTGGGTGAATGGAAGAAATAGTTCTATTCATCACTTCCTCATTTTCCCTAAATCTACAATCTCCAGATGTCACTACTGAATTAACAGCCAACAATTCCACAACATTACCTGGGAGACACTGGCCCTCTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGTCACATTAAGCAATTTATACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAAGGATTCTGACAGGAATATTCTAGGGTGCCCTAGATTAACTTTGGTGAGAATTAGATGACCCTGCTTTCCAGACCCGCAGGCCAAAATCTCCCTCTACGTGTAGACCATAATGCCAT-ATTCCCTGCCTGAGT-----C----AAAGTTAAACTAAATTTTTTCCCCAAAAA
i gorGor3.chr1                     C 0 I 2656
s ponAbe2.chr1                     107359030 453 + 229942017 TTGTAAATCAGGACAATTTGTAGCTGGGTGAATGGAAGAAATAGTTCTATTCACCGCTTCCTCATTTTCCCTAAATCTACAATCTCCAGATATCACTACTGAATTAACAGCCAACAATTCCACAACATTACCTGGGAGACACTGGCCCTTTGTCTTCCTCTTCCTCACCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGTCACATTAAGCAATTCATACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCATGAATATGGATTCTGACAGGAATATTCTAGGGTGCACTAGATTAAGTCTGGTGAGAAGTAGATGATCCTGCTTTCCAGACACACAGACCAAAATC-CCCACTACATGTAGACCATAATGCCAT-ATTCCCTGCCTGAGT-----C----AAAGTTAGACAAAATTTTTCCCCCAAA--
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     267224 458 +    297174 TTGTTAATAAGGACAATTTGTAATTGGGTGAAAAGAAGAAATAGTTCTGTACATCACTTCCCCTTTTTCCCTAAATCTACAATCTCCTGGTGTCACTATTGAATTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATAAATTCAGAGAAGCAGGTCACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCAGTGTTCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATAT-GATTCTGATAGGAATATTCCAGGGTACCCTATATTAAGTCTGATGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCTCTCTATGGGTAGACCATAATGCCAT-ATTCCATTCCTGAGTCTATGC----AAAGTTAAACAAAATTTTTCCCCAAAA--
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94863593 455 + 229590362 TTGTTAATAAGGACAATTTGTAACTGGGTGAATGGAAGAAATAGTTCTATTCATCACTTCCTCATTTTCCCTAAATCTACAATCTCCTGGTGTCACTACTGAATTAACAGCCCACAATTCCACAGCATTACCTGGGAGACACTGGCCCATTTTCTTCCTCTTCCTCATAAACACTTTCATTTTCTGTAAATAAATTCAGAGAAG-AGGTCACATTAAGCAATTCACACTTCAC---------------------ATATGGCCAAATCACTGTATAGTCATAGCACAAGAACATAACTATTCTCAGTGCAAGAATATGGATTCTGATAGGAATATTCTAGGGTGCCCTAGATTAAGTCTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTCTGTGTAGACCATAATGCCAT-ATTCCCTGCCTGAGT-----C----AAAGTTAAACAAAATTTTTCCCCAAAAAA
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211832083 457 + 227556264 TTGTTAATAAGGACCATTTGTAGCTGGGTGAAGGGAAGAAATAGTTCTATTCATCACCTCCCCTTTTTCCCTCAATCTACAATCTCCAGGTGTCACTACTGAAGTAACAGCCCACAATTCCACAGCATTACCTGGAAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCACTTTCTGTAAATAAATTCAGAGAAGCAGGTCACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACATAACTATTCTCAGTGCAAGAATATGGATTCTGACAGGAATATTCTAGGATGCCCTAGATAAAGTCTGGTGAGAAGTAGATGACCCTGCTTTCCAGACCCACAGGCCAAAATCTCCCTCTACATGTAGACCATAATGCCATAATTCCCTGCCTGAGT-----C----AAAGTTAAACAAAATTTTTCCCAAAAAAC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201385880 460 - 220367699 TTGTTAATAAGGACAATTTGTAGCtgagtgaatgaaagaaagagtTCTATTCATCGCTTCCTCGTTTTCCCGAAATCTACAATCTCCAGGTGTCACTACTGAATTCACAGCTCACAATTCCACAGCATTACCTGGGAGACACTggccctttttcttcctcttcttcatgatcactttcattttctgtaaataCATTCAAAGAAGCAGGTCACATTAAGCAATTCACACTTCAC---------------------ATATGACCAAATCACTGTCCAGTCATAGCACAAGGACCCAACTATTCTCAGGGCAAAAACATGGATTCTGACATGAATATTCTAGGGTGGTCTAAATTAAGTCTGGTGAGAAGTAGATGACCCTGCTTTCCAGTCCCACAGGCCAAAATTTCCCTCTGTGGGTACACTATAATGCCAT-ATTCCCTGCCTGAGT-----ctatgcaaagaaaataaaattttccccCCAAAAA
i papAnu2.chr1                     C 0 I 977
s chlSab2.chr20_KE148050v1_random    1019820 472 -   1280666 TTGTTAATAAGGACAATTTGTAGCTGAGTGAAGGGAAGAAATAGTTTTATTCATCACCT-----TTTTCCCTAAATCTACGATCTCCGGGTGTCACTACTGAATTAACAGCCCCCAATTCCACAGCATTACCCGGGAGACACTGGCCCTTTTTCTTCCTCTTCCTCATCATCACTTTCATTTTCTGTAAATCAATTCAGAGAAGCAGGTCACATTAAGCAATTCACACTTCACATATGACCAAATCACTGTCATATATGACCAAATCACTGTCCAGTCATAGCACAAGGAGGTAACTATTCTCAGTGCAAGAATATGGATTCTGAGAGGAATATTCTAGGGTGCCCTAGATAAAGTGTGGTGAGAAGTAGATGACCCTGCTTTCCAGTCCCACAGGCCAAAATTTCCCTCTGTGGGTAGACTATAATGCCAT-ATTCCCTGCCTGAGT-----C----AAAGTTAAACAAAATTTTTCCCAAAAAAC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377   0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I

a score=1092.000000
s hg38.chr1_KI270711v1_random          17195 2 +     42210 AA
s panTro4.chr1_GL389150_random         90618 2 +    113811 AA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107359483 2 + 229942017 AA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     267682 2 +    297174 AA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377 0 +  47448759 C
e rheMac3.chr1                      94864048 0 + 229590362 C
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e papAnu2.chr1                     201386340 977 - 220367699 I
e gorGor3.chr1                     104544967 2656 - 229507203 I
e macFas5.chr1                     211832540 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random    1020292 0 -   1280666 C

a score=894505.000000
s hg38.chr1_KI270711v1_random          17197 404 +     42210 TCTCCAAAAATTGGT----CCATTTTCTAAGAGTGTTGCTGCAATACGGACTTATATCACCAGATAACATGGACATTAAATGTTTAGAGGCATCTATACATGAAACACGACTGATAGATAAATTTGAACAACTCTTCCTTTAAAAAGAATCTGTGAtttgggaggccaagacaggtgaatcatttgaggtcatgagttcaggactaccctggccaatatggggaaaccctgtctctactaaaaatacaaaaattagccagatgtgatgttgtgcacctgtggtcccagcaactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcaccaagccaagatggtgcaactgcactctagcctgggtgacagagcaagactccatcgcaaaaaaa
s panTro4.chr1_GL389150_random         90620 404 +    113811 TCTCCAAAAATTGGT----CAATTTTCTAAGAGTGTTGCTGCAATACGGACTTATATCACCAGATAACATGGACATTAAATGTTTAGAGGCATCTATACATGAAACACGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCTGTGAtttgggaggccaagacaggtgaatcatttgaggtcatgagttcaggactaccctggccaatatggggaaaccctgtctctactaaaaatacaaaaattagccagacgtgatgttgtgcacctgtggtcccagcaactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcaccaagccaagatggtgccactgcactccagcctgggtgacagagcaagactccatcgcaaaaaaa
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107359485 401 + 229942017 TCGCCAAAAATTGGTCAAACAATTTTCTAAGAGTGTTGCTGCAATACAGACTTATATCACCAGGTAACATGGACATTAATTGTTTAGAGGCATCTATACATGAAACACGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCTGTGAtttgggaggccaacacaggtgaatcatttggggtcatgagttcaggactagcctggccaatatggggaaaccctgtctctactaaaaatacaaaaattagctagatgtgatgttttgcacctgtggtcccagcaactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgcaccaagccaagatggtgccactgcactccagcctgggtgacagagcaagactccattgc-------
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     267684 408 +    297174 TCTCCAAAAATTGCTCAAACAATTTTCTAGGAGTGTTGCTGCAATACTGACTTATATCCCCAGGTAACACAGACATTAAATGTTTAGAGGCATCTGTACATGAAACTCGACTGATAGATAAATTTGAACAGCTCTTGCTTTAAAAAGAATCTGTGAtttgggaggccgaggcagatgaatcatttgaggtcatgagttcaagaccaacctggccaatatggggaaaccccatctctactaaaaatacaaaaattagccatatgtggtggtgtgcacctgtggtcccagctactcaggaggctgaggcaggagaatcatttgaatctgggaggcagaggttgcacaaagccaagatggtgccactgcactccagcctgggtgacagagcaagactccaacgcaaaaaaa
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94864048 407 + 229590362 TCTCCGAAAACTGGTCAAACAATTTTCTAGGAGTGTTGCTGCAATGCTGACTTATATTACCAGGTAACATGGACATTAAATGTTTAGAGGCATCTACACATAAAACTTGACTGATAGATGAATTAGAACAACTCTTGCTTTAAAAAGAATCTGTGAtttgggaggccaagacaggtgaatcatttgaggtcatgaattcaagaccagcctggccaatat-gggaaaccccatctctactaaaaatacaaaaattagccagatgtggtggtgtacacctgtggtcccaggtactcaaaaggctgaggcaggagaatcacttgaatttgggaggcggaggttgcgccaagccaagatggtgccactgcactccagcctgggtgacagagcaagactccattgcaaaaaaa
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211832540 404 + 227556264 TCTCCAGAAATTGGT----CAATTTTCTAGGAGTGTCGCCGCAATACTGACTTATATTACCAGGTAACATGGACATTAAATGTTTAGAGGCATCTATACATGAAACTCGACTGATAGATAAATTTGAACAATTCTTGCTTTGAAAGGAATCTGTGAtttggaaggccaagacaggtgaatcatttgaggtcataagttcaagaccagcctggccaatatggggaaaccccgtctctactaaaaatacaaaaattagccagatgtggtgatgtgcacctgtgatcccatttactcaggagactgaggcaggagaatcacttgaatctcggaggcagaggttgcaccaagccaagatggtcccactgccctccagcctgggtgacagagcaagactccactgcaaaacaa
i macFas5.chr1                     C 0 I 81
s papAnu2.chr1                     201387317 404 - 220367699 TCTCCAAAAATTAGTCGAACAATTTTCTAGGAGTGTTGCTGCAATACTGACTTATATCATCAGGTACCATGGACATTAAATGTTCAGAGGCATCTGTACATGAAACTCAACTGATAGACGCATTCTAACAACTCTTGCTTTAAAAAGAATCTGTgattcgggaggccaaggcaggtgaatcatttgaggtcatgagttcaagatgAACCTGGCCAatacagggaaaccccatctctacgaaaaatacaaaaattagccagatgtggttgtGTGTACCTGTGGTACCAGTTACtcaagatgctgaggcaggagaatgacttcaatctgagaggcggaggttgcaccaagccaagatggtgtcactgcactccaccctgggt----gagcaagactccatcgccaaaaaa
i papAnu2.chr1                     I 977 C 0
s chlSab2.chr20_KE148050v1_random    1020292 407 -   1280666 TCTCCAGAAATTGGTCAAACAATTTTCTAGGGTTTTCGCCGCAATACTGACTTATATCACCAGGTAACATGGACATTAAATGTTTAGAGGCATCTATACATGAAACTCGACTGATAGATAAATTTGAACAACTCTTGCTTTAAAAAGAATCTGTGAtttgggaggccaagacaggtgaatcatttcaggtcatgagttaaagaccagcctggccaatatggggaaacctggtctctact-aaaatacaaaaattggccagatgtggtggtgtgcacctgtggtcccagctactcagaaggctgaggcaaaggaatcacctgaatctgggaggcggagattgcaccaagccaagatggtgacatggcactctagcctggatgacagagcaagactccattgcaacaaca
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377   0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e gorGor3.chr1                     104544967 2656 - 229507203 I

a score=546.000000
s hg38.chr1_KI270711v1_random          17601 2 +     42210 aa
s panTro4.chr1_GL389150_random         91024 2 +    113811 aa
i panTro4.chr1_GL389150_random     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268092 2 +    297174 aa
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377 0 +  47448759 C
e rheMac3.chr1                      94864455 0 + 229590362 C
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e papAnu2.chr1                     201387721 0 - 220367699 C
e gorGor3.chr1                     104544967 2656 - 229507203 I
e ponAbe2.chr1                     107359886 0 + 229942017 C
e macFas5.chr1                     211832944 81 + 227556264 I
e chlSab2.chr20_KE148050v1_random    1020699 0 -   1280666 C

a score=2059.000000
s hg38.chr1_KI270711v1_random          17603 6 +     42210 aaaaaa
s panTro4.chr1_GL389150_random         91026 6 +    113811 aaaaaa
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104547623 6 - 229507203 AAGAAA
i gorGor3.chr1                     I 2656 I 68
s nomLeu3.chr24_GL397604_1_random     268094 6 +    297174 aaaaca
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201387721 1 - 220367699 -----a
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377 0 +  47448759 C
e rheMac3.chr1                      94864455 0 + 229590362 C
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e ponAbe2.chr1                     107359886 0 + 229942017 C
e macFas5.chr1                     211832944 81 + 227556264 I
e chlSab2.chr20_KE148050v1_random    1020699 0 -   1280666 C

a score=171.000000
s hg38.chr1_KI270711v1_random          17609 5 +     42210 aaaaa---
s panTro4.chr1_GL389150_random         91032 5 +    113811 aaaaa---
i panTro4.chr1_GL389150_random     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268100 5 +    297174 aaaaa---
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201387722 5 - 220367699 ---aaccc
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377 0 +  47448759 C
e rheMac3.chr1                      94864455 0 + 229590362 C
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e gorGor3.chr1                     104547629 68 - 229507203 I
e ponAbe2.chr1                     107359886 0 + 229942017 C
e macFas5.chr1                     211832944 81 + 227556264 I
e chlSab2.chr20_KE148050v1_random    1020699 0 -   1280666 C

a score=1754.000000
s hg38.chr1_KI270711v1_random          17614 6 +     42210 aaaaaa-
s panTro4.chr1_GL389150_random         91037 6 +    113811 aaaaaa-
i panTro4.chr1_GL389150_random     C 0 C 0
s gorGor3.chr1                     104547697 6 - 229507203 aaaaaa-
i gorGor3.chr1                     I 68 N 0
s ponAbe2.chr1                     107359886 6 + 229942017 aaaaaa-
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268105 6 +    297174 aacaaa-
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s papAnu2.chr1                     201387727 6 - 220367699 -accacc
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377 0 +  47448759 C
e rheMac3.chr1                      94864455 0 + 229590362 C
e tupBel1.scaffold_109258.1-256308     38098 0 +    256308 I
e macFas5.chr1                     211832944 81 + 227556264 I
e chlSab2.chr20_KE148050v1_random    1020699 0 -   1280666 C

a score=4386.000000
s hg38.chr1_KI270711v1_random          17620 20 +     42210 aaaaaaaaaaaaaaaaaTCC
s panTro4.chr1_GL389150_random         91043  6 +    113811 aaa--------------TCC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107359892 20 + 229942017 aaaaaaaaaaaaaaaaaTCT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268111 11 +    297174 ---------aaaaCGAATCT
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94864455 12 + 229590362 --------aaaaaaaaaTCT
i rheMac3.chr1                     C 0 C 0
s papAnu2.chr1                     201387733 20 - 220367699 gccaccaacaacaacaatct
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20_KE148050v1_random    1020699 13 -   1280666 -------acaaaaaaaaTCT
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377  0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e macFas5.chr1                     211832944 81 + 227556264 I

a score=1077687.000000
s hg38.chr1_KI270711v1_random          17640 497 +     42210  
s panTro4.chr1_GL389150_random         91049 497 +    113811  
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107359912 494 + 229942017  
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268122 506 +    297174  
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94864467 500 + 229590362  
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211833025 497 + 227556264  
i macFas5.chr1                     I 81 C 0
s papAnu2.chr1                     201387753 498 - 220367699  
i papAnu2.chr1                     C 0 I 9316
s chlSab2.chr20_KE148050v1_random    1020712 494 -   1280666  
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377   0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I

a score=565114.000000
s hg38.chr1_KI270711v1_random          18137 271 +     42210 AAATGAATTTGTGTTTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAGAGAGGTATGAGACACAAGGAAAACAGAGGCTACCTGGGATAATGTGTACAGCATCCTCCCATTCAACATGAGAGGATG---AGCCAATG---AGAGTTGAGTCGACTTTGTCTTCCTCAAATGTGATTTTGGTTTTCCTATGTGGCTGGTTGGAGTCATAAGGGCCATGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
s panTro4.chr1_GL389150_random         91546 271 +    113811 AAATGAATTTGTGTTTATAGAGCCTGTCTTCAGAGTTTATCATCCTCAGCCTAGAGAGAGGTATGAGACACAAGGAAAACAGAGGCTACCTGGGATAATGTGTACAGCATCCTCCCATTCAACATGAGAGGATG---AGCCAATG---AGAGTTGAGTCGACTTTGTCTTCCTCAAATGTGATTTTGGTTTTCCTATGTGGCTGGTTGGAGTCATAAGGGCCATGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107360406 271 + 229942017 AAACCAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAGAGAGGCATGAGACACAAGGAAAATAGAGGCTACCTGGGATAATGTGTACAGCATCCTCCCATTCAACATGAGAAGATG---AGTCAATG---AGAGTTGAGTCGACTTTGTCTTCCTCAAATGTGATTTTGGTTTTCCTGTGTGGCTGGTTGGAGTCACAAGGGCTGTGGCTATTTGAACATGTGATGGCATATTCCTCCAGTGAGTCCTCAGGGACTTCG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268628 271 +    297174 AAACCAATTTGTGTATATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAAAGAGGTATGAGACACAAGGAAAATAGAGGCAACCTGGGATAATGTGTACAGCATCCTCTCATTCATCAGGAGAGGATG---AATCAATG---AGAGATGGATCAACTTTCTCTTCCTTAAATGTGATTTTGGTGTTCCTGTGAGGCTGTTTGGAGTCACAAGGGCCATAGCTGTTTGAATAAGTGACGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94864967 271 + 229590362 AAACCAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGACAGAGGTATGAGACACAAGGAATACAGAGGCTACCTGGGATAATTTGTACAGCATCCTCCCATTCATCACGAGAAGATG---AGTCAATG---ACAGTTGAGTCGACTTTGTCTTCCTCAAATGTGATTTTGGTGTTTCTGTGTGGCTTGTTGGAGTCACAAGGGCTGTGGCTATTTGAACAAGGGACGGCACATGCCTCCAGTGAGTCCTCAGGGATTTCC
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211833522 270 + 227556264 AAACCAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGACAGAGGCAGGAGACACAAGGAAAACAGAGGCTACCTGGGATAATATGTACAGCATCCT-CCACTCATCATGAAAGGATG---AGTCAATG---AGAGTTGAGTCGACTTCATCTTCCACAAATGTGATCTTGGTATTCCTGTGTGGCTGGTTCGAGTCATAAGGGCCGTGGCTATTTGAACAAGTGACGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201397567 277 - 220367699 AAACCAATATGTAAGTATATAGCCTGTCCTCACAATGGATCTTCCGTAGTCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGCGACAAGGTTTAGAGCATCCTGCCGTACATCAGGAGACGATTCACGGTCTATAAGCAGAGTCAAGTCCATTTGGTCTTCCTTAAATGTGACTTCGGAGTTCTTGTGAGGATGATTGGACTCAGAAGGGCCATAGCTATTTGAACAAGTGATGGCACATTCCTCCACTGAGTCCTCAGGgacttcc
i papAnu2.chr1                     I 9316 C 0
s chlSab2.chr20_KE148050v1_random    1021206 271 -   1280666 AAAACAATCTGTGTGTATAGAGCCTGTCTTCAGAGTTTACCTTCCTCAGCCTAGACAGAGGCAGGAGACACAAGGAAAAGAGAGGCTACCTGGGATAATATGTACAGCATCTGCCCACTCATCATGAGAGGATG---AGTCAATG---AAAGGTGAGTTGAATTTGTCTTCATCAAATGTGATCTTGGTATTCCTGTGTGGCTGGTTGGAGTCACAAGGAACATGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTCC
i chlSab2.chr20_KE148050v1_random  C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377   0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I

a score=281100.000000
s hg38.chr1_KI270711v1_random          18408 172 +     42210 TTTTCTTCAGCCTTCTGCATCTCCCTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCATGGAGTCCTAGCTGGTTTTGACAGGCGGCATTAAGAGAGTGGTCCCAGAAAGCAAAATGGAGGTTCCCATTAAGAGGGAACATGCAATC
s panTro4.chr1_GL389150_random         91817 172 +    113811 TTTTCTTCAGCCTTCTGCAACTCCCTGATGAGCCAGGTGGGACACAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGCAGCATTAAGAGAGTGGTCCCAGAAAGCAAAATGGAGGTTCCCATTAAGAGGGAACATGCAATC
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107360677 172 + 229942017 CTTTCTTCAGCCTTCTGAACCTCGCTGATGAGCCAGGTGGGACAGAGATGACGGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGTGGCATTAAGAGAGTGGTCCCAAAAAGCAAAATGGAGGTTCCCTTTAAGAGGGAACATGCAATC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     268899 171 +    297174 TTTCCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGATTGAGATGACAGAAGATTAGACACAGAGGGATTGGACCCCAGGGAGTCCTGGCTGGTTTTGACAGGAGGCA-TAAGAAAGTGGTCCCAGAAAGCAAACAGGAGGTTCCCTTTAAGAGGGAACGGGCAATC
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94865238 172 + 229590362 CTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGATGGCAGAAGATTAAACACAGAGGGATTAGACCCCAGGGAGTCCTAGCTGGTTTTGACAAGAGGCATTAAGAGAGTGGTCCCAGAAAGCAAACAGGAGGTTCCCTTTGAGAGGGAACAGGCAAAC
i rheMac3.chr1                     C 0 C 0
s macFas5.chr1                     211833792 172 + 227556264 CTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGAAGAAAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAATCCTAGCTGGTTTTGACAGGAGGCATTAAGAGAGAGGCCCCAGAAAGCAAACAGGAGGTTCCCTTTAAGAAGTGACAGGCAATC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201397844 168 - 220367699 ttttcttctgccttccGCACCTCCCTGATG----AGGTGAGATAGAGATGCCAGAAGATTAAATACAGAGGGATTGGACCCCAGGGAGACCTAGCAGGTTTTGACGGGAAGCATTAAGACAGTGGTCACAGAAAGCAAACAGGAGTTTCCCTTTAGGAGGGAACAGGCAATC
i papAnu2.chr1                     C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e calJac3.chr18                      3627377   0 +  47448759 C
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e chlSab2.chr20_KE148050v1_random    1021477   0 -   1280666 C

a score=331801.000000
s hg38.chr1_KI270711v1_random          18580 160 +     42210 CTGTTCTCTCTGCAACAGAGCATGGCTGCCATGGGAACCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTACGGTGCAGACATGACACTCGGCACACATAGAGAAACATGACA
s panTro4.chr1_GL389150_random         91989 158 +    113811 CTGTTCTCTCTGCAACAGAGCATGGCTGCCATGGGAACCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTAACCCTGTACGGTACAGACATGACACTCGGCACAC--AGAGAAACATGACA
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107360849 160 + 229942017 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGGAATCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACACATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTATGGTACAGACATGACACTCGGCACACATAGAGAAACATGACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     269070 160 +    297174 CTCTTCTCTCTGCAGCAGAGCATGGCTGCCAAAGGAGCCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACAGATAGGAGGTGAGGTGGATGAAGACTCAGCTATCCCTGTACGGTACAGACATGACACTCGGCACACATAGAGAAACTCGACA
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s rheMac3.chr1                      94865410 160 + 229590362 CTCTTCTCTCTGCAACAGACCATGGCTGCCATGGGAGCCAGAGAGGAAGAGAGCAACTCATGTTCACTGCACTGGAAAGACAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTACGGTACAGACATGACACTCAGCACACACAGAGAAACACAACA
i rheMac3.chr1                     C 0 I 5493
s macFas5.chr1                     211833964 160 + 227556264 CTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGGAGCCAGAGAGGAAGAAAGCAACTCATGTTCACTGCACTGGAAAGACAGGAGCTGAGGAGGATGAAGACTCAGCTCTCCCTGTACAGTACAGACATGACACTCGGCGCACACAGAGAACCACAACA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201398012 158 - 220367699 CTCCTCTCTCTGCAACAGAGCATGGCGGCCATAGGAGACAGAGACGAAGAGACCAACCGGTGTTCATTTCACTGGATAGATAGGAGCTGAGAAGGATGAAGACTCAGCTATCCCTGTTCGGTACAGATATGACACTcaccacacacagagaa--acaaca
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3627377 160 +  47448759 CTGTCCCCTCTGCAACACAGTGTGGCTGCCATGGGAACCGGAGAGAAAGACAGCAGCTGGTATTCCTTACACTGGGCAGAAAGGAGCCGAGAAGAAAAAAGACTCAGTTATCCCTGTATAATTCAGACACGGCACTCAGCACATACAAAGAACCACAACA
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e tupBel1.scaffold_109258.1-256308     38098   0 +    256308 I
e chlSab2.chr20_KE148050v1_random    1021477   0 -   1280666 C

a score=144498.000000
s hg38.chr1_KI270711v1_random          18740 92 +     42210 GCTGCCGCACCCTGTGTCTAAGCTGGGTTATATTTCACATACTGTGGCCAAGCGAATGTGGGTTTTTGGCCCATCATAGATGCCAGAG--AGGG
s panTro4.chr1_GL389150_random         92147 92 +    113811 GCTGCCGCACCCTGTGTCTAAGGTGGGTTATATTTCACATACTGTGGCCAAGCGAATGCGGGTTTTTGGCCCATCATAGATGCCAGAG--AGGG
i panTro4.chr1_GL389150_random     C 0 C 0
s ponAbe2.chr1                     107361009 92 + 229942017 GCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCGGGTTTTTGGCCCATCGTAGATGCCAGAG--AGGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr24_GL397604_1_random     269230 92 +    297174 GATGCCACACTCTGTGTCTATGCTGGGTTGAATTTCACGTACTGTGGCCAAGGGAATGCAGGCTTTTGGCCCACTGTAGATGCCAGAG--AGGG
i nomLeu3.chr24_GL397604_1_random  C 0 C 0
s macFas5.chr1                     211834124 92 + 227556264 GCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCAGGCTTTGGGCCCATCCTAGATGCCAGAG--AGGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                     201398170 94 - 220367699 GCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCTCATACTGTGGCCAAGAAAATACAGGCTTGTGGCCCACTGTAGATGCCAGAGACAGGG
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                      3627537 92 +  47448759 GCTGCCACATCCTGTGTCAAAGTTGGGTTGAACTGAACATATTGTGGCCAAGGGAATACAGGCTTTTGGCCCATGGGAGACACCAGAG--AGGG
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    143373 24127 +    451211 I
e rheMac3.chr1                      94865570 5493 + 229590362 I
e tupBel1.scaffold_109258.1-256308     38098  0 +    256308 I
e chlSab2.chr20_KE148050v1_random    1021477  0 -   1280666 C

a score=18544.000000
s hg38.chr1_KI270711v1_random         18832 13 +     42210 TGTACCTCCTAGA
s panTro4.chr1_GL389150_random        92239 13 +    113811 TGTGCCTCCTAGA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361101 13 + 229942017 TGTGCCTCCTACA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269322 13 +    297174 TGTGCCTCCTAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834216 13 + 227556264 TGCGCCTCCTAGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398264 13 - 220367699 TGTGCCTCCTACA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627629 12 +  47448759 TGTG-CTTCTAGA
i calJac3.chr18                   C 0 C 0
s tupBel1.scaffold_109988.1-44727     35903 13 -     44727 TGTTCATACAAGT
i tupBel1.scaffold_109988.1-44727 n 0 I 134
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C

a score=82820.000000
s hg38.chr1_KI270711v1_random         18845 57 +     42210 TATTCTTCATATGTTACCATCCATTAATTGTTCCTGAGTATTCAGTGTTACCTGGGG
s panTro4.chr1_GL389150_random        92252 57 +    113811 TATTCTTTATATGTTACCATCCATTAATTGTTCCTGAGTATTCAGTGTTACCTGGGG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361114 56 + 229942017 CATT-TTCATATGTTACCACCTATTACTTGCTCCTGAGTATTCAGTGTTACCTGGGG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269335 57 +    297174 CCTTTTTCATATGTTACCACCCATTACTTGCTCCTGAGTATTCAGTGTTACCTGGGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834229 57 + 227556264 CCCTTTTCATATGTTACCACCCACTACTTGCTCCTGAGTATTCAGTGTTACCTGGGC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398277 57 - 220367699 TCTTTTTCCTATGTTAAAACCCATTACTTGCTCCTGATTTTTCAGTGTTACCTGGGG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627641 57 +  47448759 CCTTTTCCATACTTTACCACCCATTACTTGCTCCGGCTTCTTCAGTGTTACCTGGGG
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_109988.1-44727     35916 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C

a score=3766.000000
s hg38.chr1_KI270711v1_random         18902 2 +     42210 GC
s panTro4.chr1_GL389150_random        92309 2 +    113811 GC
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361170 2 + 229942017 GC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269392 2 +    297174 GC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834286 2 + 227556264 AC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398334 2 - 220367699 GC
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627698 2 +  47448759 GC
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE944318v1                   4700 2 -     12850 GT
i tarSyr2.KE944318v1              N 0 I 7
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_109988.1-44727     35916 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C

a score=30310.000000
s hg38.chr1_KI270711v1_random         18904 22 +     42210 AGACGATTTCTGCACTTTCTCA
s panTro4.chr1_GL389150_random        92311 22 +    113811 AGACGATTTCTGCACTTTCTCA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361172 22 + 229942017 AGATGATTCCAGTACTTTCTCA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269394 22 +    297174 ACATGATTCCTGTACTTTCTCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834288 22 + 227556264 ACATGAATCCTGTACTTTCTCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398336 22 - 220367699 ACGTGATTCCTGtactttctca
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627700 22 +  47448759 ACGTGATTCCTGGATGTTCTCA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4702  7 -     12850 I
e tupBel1.scaffold_109988.1-44727     35916 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C

a score=5649.000000
s hg38.chr1_KI270711v1_random         18926 3 +     42210 GCC
s panTro4.chr1_GL389150_random        92333 3 +    113811 GCC
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361194 3 + 229942017 GCC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269416 3 +    297174 GCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834310 3 + 227556264 GCC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398358 3 - 220367699 gtt
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627722 3 +  47448759 GCC
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE944318v1                   4709 3 -     12850 ACC
i tarSyr2.KE944318v1              I 7 I 2406
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_109988.1-44727     35916 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C

a score=99076.000000
s hg38.chr1_KI270711v1_random         18929 66 +     42210 ACCTCAACTTGAACATCTTCATCGTGATCATTGTCATTTTCTGTAAATACAGAAGTGTTCGTTCAG
s panTro4.chr1_GL389150_random        92336 66 +    113811 ACCTCAACTTGAACATCTTCATCGTCATCGTTGTCATTTTCTGTAAATACAGAAGTGTTCGTTCAG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361197 66 + 229942017 TCCTCAACTTGAACATCTGCATCCTCATCTTCATCATTTTCTGTAAATACAGAAGTGTTCATTCAG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269419 66 +    297174 TCCTCAACTTCAACATCTTCATCCTCATCTTCGTCATTTTCTGTAAATACAGAAGTGTTCGTTCAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834313 66 + 227556264 TCCTCAACTTGAACATCTGCATCCTCACCTTGGCCATTTTCTGTAAATACAGAAGTGTTCGTTCAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398361 66 - 220367699 tcctcaacgttcacatcttcatcctcatcttcacCGTTTTCTGTAAATACAGAAGTGTTCCTTCAG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627725 66 +  47448759 TCCATGACACGAACATCTTCATCCTCGTCTTTGTCGTTTTCTGCAAGTACAGATGTGTTCGTTCAG
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     35916 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C

a score=327.000000
s hg38.chr1_KI270711v1_random         18995 1 +     42210 A
s panTro4.chr1_GL389150_random        92402 1 +    113811 A
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361263 1 + 229942017 A
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269485 1 +    297174 A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834379 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398427 1 - 220367699 A
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627791 1 +  47448759 T
i calJac3.chr18                   C 0 C 0
s tupBel1.scaffold_109988.1-44727     36050 1 -     44727 A
i tupBel1.scaffold_109988.1-44727 I 134 n 134
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C

a score=7644.000000
s hg38.chr1_KI270711v1_random         18996 4 +     42210 TATT
s panTro4.chr1_GL389150_random        92403 4 +    113811 TATT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361264 4 + 229942017 TATT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269486 4 +    297174 TATT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834380 4 + 227556264 TATT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398428 4 - 220367699 TATT
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627792 4 +  47448759 TATT
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C

a score=-913.000000
s hg38.chr1_KI270711v1_random         19000 2 +     42210 --TA
s panTro4.chr1_GL389150_random        92407 2 +    113811 --TC
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361268 2 + 229942017 --TC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269490 2 +    297174 --TC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834384 2 + 227556264 --TC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398432 2 - 220367699 --TC
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627796 2 +  47448759 --TC
i calJac3.chr18                   C 0 C 0
s micMur1.scaffold_35623               8126 2 -     11647 GA--
i micMur1.scaffold_35623          N 0 N 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C

a score=61356.000000
s hg38.chr1_KI270711v1_random         19002 40 +     42210 CCACTTCACAGTCTGCAAGCACAGTCAGCCCAATGTGCAA
s panTro4.chr1_GL389150_random        92409 40 +    113811 CCACTTCACAGTCTGCAAGCACAGTCAGCCCAATGTGCAA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361270 39 + 229942017 CCACTTCACACTCTGCAAGCACAGTCAGCCCAATGTGCA-
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269492 39 +    297174 CCACTTCACACCCTGCAAGCACAGTCAGCCCTATGTACA-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834386 39 + 227556264 CCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGCA-
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398434 39 - 220367699 CCACTTCACATTCTGCAGGCACAGTCAGCCCAATGTGCA-
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627798 39 +  47448759 CCATTTCTCACTCTGCAGGGACAGTCGGCCCAATGTGCG-
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C

a score=9942.000000
s hg38.chr1_KI270711v1_random         19042 5 +     42210 CAGAG
s panTro4.chr1_GL389150_random        92449 5 +    113811 CAGAG
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    207328539 5 - 229507203 CACAG
i gorGor3.chr1                    N 0 I 2665
s ponAbe2.chr1                    107361309 5 + 229942017 CAGAG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269531 5 +    297174 CAGAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834425 5 + 227556264 CAGAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398473 5 - 220367699 CACAG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627837 5 +  47448759 CAGGG
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C

a score=245581.000000
s hg38.chr1_KI270711v1_random         19047 159 +     42210 ACATGAACATCTAGGCATGGGTCACCGTTCAACTGAAAACTCTCATGTTTTATCTTTAACAGAATGCCCTGGCATGGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT-GGAGGGCCACCATCAAGATGTGGCCAA-ATATTGAAAAGACCTTTTGCT
s panTro4.chr1_GL389150_random        92454 159 +    113811 ACATGAACATCTAGGTATGGGTCACCGTTCAATTGAAAACTCTCATGTTTTATCTTTAACAGAATGCCCTGGCATGGTTTCCTGATCCATGAGGCAATGCATTTCTGATGT-GGAGGGCCACCATCAAGATGTGGCCAA-ATACTGAAAAGACCTTTTGCT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361314 157 + 229942017 ACATGAACATCGAGGCATGGGTCACCATTCAACTGAAAACTCTCATGTTTTATCTTTAACAAAAG--CCCGGCATGGTTCCCTGATTCATCAGGCAATGCA-TTCTGATCTCTGGAGGCCACAATC-AGATGTGGCCAATATATGGAAAGAACTTATAGCT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269536 159 +    297174 ACATGAACATCTAGGCATGGGTCACCATTCAACTGAAAGCTCTCATGTTTTATCTTTAACAAAATGCACTGGCACGGTTTCCTGATCCATCAGGTAATGCATTTCTGATCT-GGAGGGCCATCATCAAGATGTGGCCAA-ATATTGAAAAGATCTTTTGCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211834430 159 + 227556264 ACATGAACATCTAGGCGTGGGTCACCGTTCAACTGAAAGCTCTCATGTTTTATCTTTAACAAAATGCCCTGGCGTCGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT-GGAGGGCCACCATCAAGATATGGCCAA-ATATTGAAAAGACCTTTTGGT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398478 159 - 220367699 ACATGGACATCTAGGCATGGGTCACCGTTCAATTGAAAGCTCTCATGTTTTATCTTTAACAAAATGCCCTGGCATGGTTTCCTGATCCATCAGGCAATGCATTTCTGATCT-GGAGGGCCACCATCAAGATGTGGCCAA-ATATTGAAAAGACCCTTTGCT
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3627842 158 +  47448759 ACATGAACATCTGTGTATGGGTCCCTGTTCTACTGAAAGCTCTCATGTTTTCTCTCTAACAAAATGCCCTGGCATGGTTTCCTGATCCACCAGGCAATGCATTTCAGATCA-GGAGGCTCACCGTCAAGATGAGGCCGA-ATGTTGAAAAGACCTTCTGC-
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C

a score=112771.000000
s hg38.chr1_KI270711v1_random         19206 105 +     42210 TCCCATATCACTGGAGGCTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCTCCCCCATCCTGC--CAGATCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACA
s panTro4.chr1_GL389150_random        92613 105 +    113811 TCCCATATCACTGGAGGCTTGTGCAGCCTCTCTCTGGACGTTGGCAGCTGTCTCCCCCATCCTGC--CAGATGTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107361471 102 + 229942017 TCCCATA-AACTGGA-GCCTGTGCAG-CTGTCTCT-GACTTTGGCAGCTGTCTTCCCCAT-CTGCCACAGATCTGATTCCCAGGCACAGGCTTGCTGTCCTGTCACA
i ponAbe2.chr1                    C 0 I 451
s macFas5.chr1                    211834589 107 + 227556264 CCCCATATCACTGGAGGCTTGTGCAGCCTCTCTCCAGCCTTTGGCAGCTGTCTCCCCCATCCCGCCACAGATCTGATTCCCAGGCACGGGCTTGGTGTCCTGTCACA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398637 107 - 220367699 CCCCATATCACTGGGGACGTGTGCAGCCTCCCTCGGGACTTTGGCAGCTGTCTCCATCATCCCACCACAAATCTGATTCCCAGGCACAGGCTTGGTGTCCTGTCACA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3628000 107 +  47448759 TCCCACATCACTGGAGGCTTGTGCAGCCTCTCTCTGGACTTTGGCAGCTGTCCCCCCCATCCCGACACAGATCTGATTCCCAGGGACAGGCTTGGCGTCCCGTCACA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=25093.000000
s hg38.chr1_KI270711v1_random         19311 35 +     42210 GTTTGCATTTCAAACCTAATTCTTTCTCTTAGAAG
s panTro4.chr1_GL389150_random        92718 35 +    113811 GTTCGCATTTCAAACCTCATTCTTTCTCTTAGAAG
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211834696 35 + 227556264 GTTCGCATTTCCAACCTAATTCTTTCTTTTAAGAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398744 35 - 220367699 GTTCACATTTCAAACCTAATTCTTTCTCTTAGGAG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3628107 35 +  47448759 GCTCATATTTACAACCTATTTCTTTCTCTTAGGAG
i calJac3.chr18                   C 0 I 4
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e ponAbe2.chr1                    107361573 451 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1866.000000
s hg38.chr1_KI270711v1_random         19346 4 +     42210 CAGA
s panTro4.chr1_GL389150_random        92753 4 +    113811 CAGA
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211834731 4 + 227556264 AAGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201398779 4 - 220367699 AGGA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197949299 4 - 215897965 AGGA
i nasLar1.chr1                    N 0 I 1120
s calJac3.chr18                     3628146 4 +  47448759 TAAA
i calJac3.chr18                   I 4 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e ponAbe2.chr1                    107361573 451 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=174088.000000
s hg38.chr1_KI270711v1_random         19350 224 +     42210 CAAACTTGTCCCACAGTCCTCTATGCATCAGAAGATTTCAAG---CCTCCAAGTGGCTTCTGCTGTGTTATTCAGGGACATTCTATCCATGGGGAGTGCTCCAGTCTGAAGCACTTCCTACCACGAAACACCACCACATAAAGTGCCTTCTCCAACATCACACGGCGAGGGGCTTCATCTCATTTTGGAAAGCAGTTTTAAGTGTTCCCACATTTGAATGCTTCAGA
s panTro4.chr1_GL389150_random        92757 224 +    113811 CAAACTTGTCCCACAGTCCTCTATGCATCAGAAGATTTCAAG---CCTCCAAGTGGCTTCTGCTGTGTTATTCAGGGACATTCTATCCATGGGGAGTGCTCCAGTCTGAAGCACTTCCTACCACGAAACGCCCCCACATAAAGTGCCTTCTCCAACATCACACGGCGAGGGGCTTCATCTCATTTTGGAAAGCAGTTTTAAGTGTTCCCACATTTGAATGCTTCAGA
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211834735 227 + 227556264 CAAACTTGTCCCACAGTCCTCTATACATCAGGAGACTGCACAGGCCCTCCACGTGGCTTCTGCTGTGTTATTCAGGGACATTCTCTCCGTGGGGAGTGCTCCAGTCTGAAGCCCTTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACACGGCGAGGGGCTTCATCTCATTCTGAAAAACAGTCGTAAGTGTTCCCACATTTGGATGCTTCAGA
i macFas5.chr1                    C 0 I 1
s papAnu2.chr1                    201398783 227 - 220367699 CAAACTGGCCCCACAGTCGTCTATGCATCAGGAGACTTCACAGGCCTTCCATGTGGCTTCTGCTGTGTTATTCAGGGACATGCTCTCCATGGGGAGTGCTCCAGTCTGAAGCACTTCCTACCACCAAATGCCCCCACATCAAGTGCCTTCTCCAACACCACATGCCGAGGGGCTTTATCTCATTTTCAAAAGCAGTCGTAAGTGTTCCCACATTTAGATGCTTCACA
i papAnu2.chr1                    C 0 I 1
s calJac3.chr18                     3628150 227 +  47448759 CAAACTTGTCCCACAATCCTCTGCACATCAGGTGACTTCACAGGCCCTCCAAGTGGCTTCTGCTATGTTATTCAGGGACATTCTCTCCATGGGGAATGCTCCAATCTGAACCACTTCCTACCACCAAATGCCCACACATCAAGTGCTTTCTCCAACACCACACAGCGAGGGGCTTTATCTCATTGTGATAAGCGGTCATAAGTGCTCACACATTTGAATGCTTCAGA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e ponAbe2.chr1                    107361573 451 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=300.000000
s hg38.chr1_KI270711v1_random         19574 1 +     42210 C
s panTro4.chr1_GL389150_random        92981 1 +    113811 C
i panTro4.chr1_GL389150_random    C 0 C 0
s calJac3.chr18                     3628377 1 +  47448759 C
i calJac3.chr18                   C 0 I 16
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e papAnu2.chr1                    201399010 1 - 220367699 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e ponAbe2.chr1                    107361573 451 + 229942017 I
e macFas5.chr1                    211834962 1 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=47202.000000
s hg38.chr1_KI270711v1_random         19575 75 +     42210 CCTTGCA---------AGAGACAATT----TGCC-------atggagagagagaaactcaggaaggacaagtcattcactcactgacagttacta
s panTro4.chr1_GL389150_random        92982 79 +    113811 CCTTGCA---------AAAGACAATTTGTCTGCC-------ACGGAGAGAGAGAAACTCAGGAAGGACAAGTCATTCACTCACTGACAGTTACTA
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211834963 86 + 227556264 CCTTGCA---------AGAGACAATTTGGCTGCCtttgcagatggagagagagaaactcaggaaggataaatcactccctcactgacagttacta
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201399011 86 - 220367699 CCTTGCA---------AGAgacaattttcctgccttttccGATGGACACAGAGAAACTCAAGAAGGATAAATTACTCACTCACCGACAGTTACTA
i papAnu2.chr1                    I 1 C 0
s calJac3.chr18                     3628394 94 +  47448759 CTTTGCAGATGGAGAGAGAGA-AATTTACCTGTCTTTGCAGATCGAGGCAGAGAAAATCAGGAAGAAGAAATCAATTACTCCCTGACAGTTCCTA
i calJac3.chr18                   I 16 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e ponAbe2.chr1                    107361573 451 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=165433.000000
s hg38.chr1_KI270711v1_random         19650 160 +     42210 agaacattgccgaaaa-gacagcct-gggaaccttcattc-ttagtccagagctc-ttttcactCTAACAAGCCTGCTCCTATCGCAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGCTGCCTCTTACTCCAAAGACCACCTTCCATCAAGGGAGGAGGGG
s panTro4.chr1_GL389150_random        93061 160 +    113811 AGAACATTGCTGAAAA-GACAGCCT-GGGAACCTTCATTC-TTAGTCCAGAGCTC-TTTTCACTCTAACAAGCCTGCTCCCATCGCAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGCTGCCTCTTACTCCAAAGACCACCTTCCATCAAGGGAGGAGGGA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362024 164 + 229942017 AGAACATTGCCGAAAAGGACAGCCTAGGAAACTTTCATTCGTTAGTCCAGAGCTCTTTTTCACTCTAACAAGCACCCTCTCATCACAGCCTCCTTCCTGTCCTTTAAAACTAGACAGATGCTGCCTCTTGCTCCAAAGACCACCTTCCATCAAGGAAGGAGGGA
i ponAbe2.chr1                    I 451 C 0
s macFas5.chr1                    211835049 154 + 227556264 agaacattgccaaaga-gacagcct-gggaaccttcattc-ttagtccagagttc-ttttcactataacaAGCGTCCTCCTGTCACAGCCTCCTTCCTGTCCTTTAAAACTAGAGAGATGCT-----TG-CTCCAAAGACCACCTTCCATCAAGGAAGGAGGGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399097 159 - 220367699 AGAACATTGCCAAAGA-GACAGCCT-GGGAACTTTCATTC-TAAGTCTACAGCTC-TTTTCACTCTAACAAGAAccctcctgtcacagcctccttcctctcctttacAACTAGAGAGATGctgcctctgtctccaaagaCCATC-TCCACCAAGGAAGGAGGGA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3628488 160 +  47448759 AGAACACTGCTGAAGA-TACAGCTT-GGGGACCTTCATTC-TTAGTCCAGAGCTC-TTTCCTCTCCAACAACTTCCCTCCTGCCACAGCTTCCTTCCTGTCCTTTACAACTGAACAGATGCTGCCTCCTGTTCCAAAGACCACAATCCATCACGGAAGGAGAGA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_109988.1-44727     36051 134 -     44727 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=816.000000
s hg38.chr1_KI270711v1_random         19810 1 +     42210 A
s panTro4.chr1_GL389150_random        93221 1 +    113811 C
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362188 1 + 229942017 C
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835203 1 + 227556264 C
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399256 1 - 220367699 C
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3628648 1 +  47448759 C
i calJac3.chr18                   C 0 C 0
s tupBel1.scaffold_4747.1-308766     100836 1 +    308766 C
i tupBel1.scaffold_4747.1-308766  n 134 n 134
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=169847.000000
s hg38.chr1_KI270711v1_random         19811 158 +     42210 ACTTGCAATACTGTGACCTCCAACCCCATGGGTTTCCCAACTCCGTTCTTACCCAGGAACTCCTGGTCATGTCATGGCCACATATGTGTAGCAGAAAATAACCCCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGCCTCTCATAAGAC
s panTro4.chr1_GL389150_random        93222 158 +    113811 ACTTGCAATACTGTGACCTCCAACCCCATGGGTTTCCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATAAGCTTAGTGGAAAAAAACACCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGTCTCTCATAAGCC
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362189 157 + 229942017 ACTTGCAATACTGTGACCTCCAACCCCATGGGTTTCCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATAAGCTTAGTGGAAAA-AACACCACTGATACAACTGTCATTGTGAAAGTATGGAGGTCTGGAGTCTCTCATAAGCC
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835204 156 + 227556264 ATTTGCAATACTGTGACCTCCAACCCCATGGGTTTCCCATCTCTGTTCTTACCCAGGAAGTCCTGGTCATGTCATGGCCACATATGTTTAGTG--AAAAAACCCCACTGATACAACTGTCATTGTGGAAGTGTGGAGGTCTGGAGTCTCTCATAAGCC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399257 148 - 220367699 ATTTGCAATACTGTGACCTCCAAACCTATGGGTTTCCCATCTCTGATCTCACACAGGAAGTCCTGG------AAGAGCCACAAATGTTTAGTGGaaaaaaaTACCAATGATACAA----CATTGTGAAAGTATGGAGGTCGGGAGTCTCTCATAAGCC
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3628649 158 +  47448759 ATTTGCAATACGGTGACCTCCAACTCCATGGGTTTCCCATCTGTGTTCTCATTCAGAAAGTCCTAGTCATGTCATGGCCACATATGTTTCGTGGAATAAAACACCATTGATAAAACCATCATTGTGGAATTAAGGAGGTCTGGAGCCTCTCATAAGGC
i calJac3.chr18                   C 0 I 1720
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=299917.000000
s hg38.chr1_KI270711v1_random         19969 398 +     42210 TGGGGTTTTGGGTCATCAGGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGAAAAGTTGCTGTGCCAGTCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCTGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCCCGTTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGACGGTAGAGAAAATTTAAGAGTGGAAAGGGTTGAGTGATCCGCTCAAATATTGCAACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTGAAAGGAATGACTGTGGCCAA
s panTro4.chr1_GL389150_random        93380 339 +    113811 TGGGGTTTTGGGTCATCAGGGCCTATGGACACCTTACCTGGGCTGAGCTTTTGGACAAGGTGCTGTGTCAGTCTACATCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCTCGTTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGACGGTAGAGAAAATTTAAGAGTGGAA-----------------------------------------------------------AGACCTCCAAGCAGAAGGTCAGCACATGTTGAAAGGAATGACTGTGGCCAA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362346 398 + 229942017 TGGGGTTTTGGGTCATCAGGGCCTATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGGTGCTGTGCCAGTCTACACCCCTCAGCCAGCTGTTCTTGGAGGTCCTGCCCCTGGGACTTGTCCGGCTCATCTGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGAGCGGGAGGCCTCTCTCCCTTCCCGTAACTTCTCCCTTAACGGGGTCAGCTCTCATTCCTGAGCATGAACCACGACTTTATATGGCCTAAGGTGAGACAGTAGAGAAAATTTAACAGTGGAAAGGGATGAGTGATCCGCTCTAATGTTGCAACAGAGATTTCTGAGACAATGTCCTCAAGAAGACCTCCAAGCAGAAGGTCAGCACGTGTTTAAAGGAATATCTGTGGCTAA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835360 398 + 227556264 TGGGGTTTTGGGTCATGAGGGCCAATGGCCACCTTACCTGGGCTGAGCTTTTGGACAAGGTGCTGTGCCAGCCTACACCCCTCAGCCAGCTGTTCTCGGAGGTCCTGCCGCTGGGACTTGTCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGAGTCAATGAGCGGGAGGCATCTCTCCCTTCCCGTAACTTCTCCCTTAACTGGGTCAGCTCTTGTGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGAGGGTAGAGAACATTTAACAGTGGAAAGGGATGAGCGATCAGTTCTAATATTGCAACAGAGATTTCTGAGACAATGTCCTTGAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGGCCAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399405 398 - 220367699 TGGCGTTTTGGGTCTCCAGGTCCTATGGAAACCTTACCTGTGGTGAGCTTTTGGATGAGGTGCTGTGCCAGCCTACAGCCTTCGGCCAGCTGTTCTCGGAAGTCCCACCTCTGGGAGTTGGCCGGCTCATCCGGAGTGAGGAGGGCCTGGAGATGCTGATTCAATGCGCGGGAGGCATCTCTCCCTTCCTGGAACTTCTCCCTTAACTGGCTCAGCTCTCGTTCCTGAGAGTGAATCAGGACTTTATATTGCCTAAGGTGAGATAGTAGAGAAAATTGAACAGTGGAAAGGGGTGAGTGATCAGTTCGAATATTGCGACagagatttctgagacactgtcCTCAAGGAGACCTCCAAGGAGAAGGTCAGCACACGTTTAAAGAAATGTCTGTGgccaa
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=-5.000000
s hg38.chr1_KI270711v1_random         20367 2 +     42210 CA
s panTro4.chr1_GL389150_random        93719 2 +    113811 GA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362744 2 + 229942017 GT
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835758 2 + 227556264 GA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399803 2 - 220367699 ga
i papAnu2.chr1                    C 0 C 0
s saiBol1.JH378402                    49947 2 +     59198 ca
i saiBol1.JH378402                N 0 N 0
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=6550.000000
s hg38.chr1_KI270711v1_random         20369 7 +     42210 GAAAGAA
s panTro4.chr1_GL389150_random        93721 7 +    113811 GAAAGAA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362746 7 + 229942017 GAAAGAA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835760 7 + 227556264 GAAAGAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399805 7 - 220367699 gaaagaa
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650218                   143373 24127 +    451211 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=340.000000
s hg38.chr1_KI270711v1_random         20376 1 +     42210 T
s panTro4.chr1_GL389150_random        93728 1 +    113811 T
i panTro4.chr1_GL389150_random    C 0 C 0
s panPan1.JH650558                 26483589 1 -  32855946 t
i panPan1.JH650558                n 24127 I 3931
s ponAbe2.chr1                    107362753 1 + 229942017 T
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835767 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399812 1 - 220367699 g
i papAnu2.chr1                    C 0 C 0
e nasLar1.chr1                    197949303 1120 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=65188.000000
s hg38.chr1_KI270711v1_random         20377 75 +     42210 AGAAAATGGTTTACAGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTCGATGATGTTCCATTCATCTTT
s panTro4.chr1_GL389150_random        93729 75 +    113811 AGAAAATGGTTTACAGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTCAATGATGTTCCATTCATCTTT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362754 75 + 229942017 AGAAAATGGTTTACAGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGATCCTCGATGATGTTCCATTCGTCTTT
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835768 75 + 227556264 AGAAAATGGTTTACAGGCTTCCTCTGTATCAGAGAGGGCTCCTGTAAGATCCTTGATGATGTTCCATTCATCTTT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399813 75 - 220367699 gaaaaatggtttaCAGGCTTCCTCTATACCAGAGAGGGCTCCTGTAAGATGCTCGACGATGTTCCATTCATCTTT
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197949303 1120 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1500.000000
s hg38.chr1_KI270711v1_random         20452 1 +     42210 C
s panTro4.chr1_GL389150_random        93804 1 +    113811 C
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362829 1 + 229942017 C
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835843 1 + 227556264 C
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399888 1 - 220367699 C
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197950423 1 - 215897965 C
i nasLar1.chr1                    I 1120 I 263
e panPan1.JH650558                 26483590 3931 -  32855946 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=39355.000000
s hg38.chr1_KI270711v1_random         20453 48 +     42210 CCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA
s panTro4.chr1_GL389150_random        93805 48 +    113811 TCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107362830 48 + 229942017 TCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCATTTCAAAAAGA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835844 47 + 227556264 TCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTC-GTTTCAAAAAGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399889 48 - 220367699 CCTTCTCTAAACAAAAGTAGGTGTCTTCCTTATTCAGTTTCAAAAAGA
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950424 263 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    207328544 2665 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=93772.000000
s hg38.chr1_KI270711v1_random         20501 77 +     42210 CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCGGCCACTAGAT
s panTro4.chr1_GL389150_random        93853 77 +    113811 CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCAGCCACTAGAT
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    207331209 77 - 229507203 catcctttcagttcctcaCTCTGGCCATGGACATTTCCACGTGCATATACACATAGTGCATCTTGCAGTGACTAGAT
i gorGor3.chr1                    I 2665 C 0
s ponAbe2.chr1                    107362878 77 + 229942017 CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCGGCCACTAGAT
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835891 76 + 227556264 CATCCTTTCAGTTCCTCACCCTGGCCACGGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCGGCGA-TAGAT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201399937 77 - 220367699 CATCCTTTCAGCTCCTCACTCTGGCAATGGACATTTCCATGTGAAAATACACATAGTCTATCTTGCAGTGACTACAT
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950424 263 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   4712 2406 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=123276.000000
s hg38.chr1_KI270711v1_random         20578 94 +     42210 ACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGCGAATTGAAAAGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTG
s panTro4.chr1_GL389150_random        93930 94 +    113811 ACAAAGCCATGGACAGAAATGAGGCCAGGTGCAGATGGGGCGAATTGAAAAGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTG
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    207331286 91 - 229507203 ACAAAGCCATGGACAGAAATGAGGCCAGGTGCAGATGGGGCCAATTGAAAAGGTGA---AAGAAAAGAATGACAGGCTTGAGAAGGCAACATTG
i gorGor3.chr1                    C 0 N 0
s ponAbe2.chr1                    107362955 94 + 229942017 ACAAAGCCATGTACAGAAATGAGGCCAGATGCAGATGGGGCAAATTGAAAAGACAAAAGAAGAAAAGAATGACAGGGTCAAGAATGCAACATTG
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211835967 94 + 227556264 ACAAAGCCATGTACAGAAATGAGGCCGGGTGCAGATGGGGCGAATTGAAAAGAGGAAAGAAGAAAAGAATGACAGGGCCGAGAAGGCAACATTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400014 93 - 220367699 ACAAAACCATATACAGAAATGCGGCCAAGTGGAGCCGGGGC-AATTGAAAAgattaaacaagaaaagaatgaCAGGCTCCAGAAGGCAACATTG
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   7118 94 -     12850 ACAGTGTCACACATAGAAGTCTGGCCATGTAAAGGTGAGGTTAATTGGACAGATGAAAGACCCAAAGAAAGATGGAGTGAACAAGACTAGATTT
i tarSyr2.KE944318v1              I 2406 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950424 263 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=51105.000000
s hg38.chr1_KI270711v1_random         20672 50 +     42210 ATTGAGTGAAAGAATGAGAAGACGCAGTCAGTCAGAAGGTGATTCTCACT
s panTro4.chr1_GL389150_random        94024 50 +    113811 ATTGAGTGAAAGAATGAGAAGCCGCAGTCAGTCAGGAGGTGATTCTCACT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363049 50 + 229942017 ATTGAGTGAAAGAATGAGAAGCTGCAGTCAGTCAGGAGGTGATTCTCACT
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836061 50 + 227556264 ATTGAGTGAAAGAATGAGATGGCACAGCCACTCAGGAGGTGATTCTGACT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400107 49 - 220367699 ATTGGGTCAAAG-ATAAGATGCCGCAGTCAGTCAGGAGGTGATTCTGACT
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   7212 50 -     12850 TTTGGATGAAAGAATAAGAAACCACACTCAGTCGGGAGGTGATTCTGATT
i tarSyr2.KE944318v1              C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950424 263 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1911.000000
s hg38.chr1_KI270711v1_random         20722 1 +     42210 A
s panTro4.chr1_GL389150_random        94074 1 +    113811 A
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363099 1 + 229942017 A
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836111 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400156 1 - 220367699 A
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197950687 1 - 215897965 A
i nasLar1.chr1                    I 263 I 2608
s tarSyr2.KE944318v1                   7262 1 -     12850 A
i tarSyr2.KE944318v1              C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=8822.000000
s hg38.chr1_KI270711v1_random         20723 10 +     42210 AGGGTAAGTg
s panTro4.chr1_GL389150_random        94075 10 +    113811 AGGGTAAGTg
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363100 10 + 229942017 AGGTTTAGTG
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836112 10 + 227556264 AGGGTAAGTg
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400157 10 - 220367699 TGGGTAACTG
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   7263 10 -     12850 AGAGTAAATG
i tarSyr2.KE944318v1              C 0 I 58
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=58065.000000
s hg38.chr1_KI270711v1_random         20733 75 +     42210 gggtggtgatggcacaccattttgagtatactgaatgctgctgtgtggttcacactcctttggttaattttgtgt
s panTro4.chr1_GL389150_random        94085 75 +    113811 gggtggtgatggcacaccattttgagtatactgaatgctgctgggtggttcccactcctttggttaattttgtgt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363110 73 + 229942017 Tggtggcgatcgcacaccattttgagtatactgaatgctgttgggtggttcccattcctttggttaattt--tgt
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836122 75 + 227556264 gggtggtgatgacacaccattttgagtatactgaatgctgttgggtggttcccactcctttggttaattttgtgt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400167 75 - 220367699 GGGTGGTGATGGCACACCATTTTGAGTACACTGAATGCTGCTGGGTTGTTCCCACTCCTTTGATTCATCATGTCT
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   7273 58 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=17859.000000
s hg38.chr1_KI270711v1_random         20808 17 +     42210 tatgtaaatttcacatc
s panTro4.chr1_GL389150_random        94160 17 +    113811 tatgtaaatttcacatc
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363183 17 + 229942017 tatgcaaatttcacctc
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836197 17 + 227556264 tatgtaaatttcacctc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400242 17 - 220367699 TATGCAAATTTCACCTC
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   7331 17 -     12850 TACAGGAATTTTACCTC
i tarSyr2.KE944318v1              I 58 I 506
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=49897.000000
s hg38.chr1_KI270711v1_random         20825 63 +     42210 aaCAATTACTTGTTTGAAAAAGAGAAAACAAGGCTCTGAGAAACAACTGCAACCCATAAATTT
s panTro4.chr1_GL389150_random        94177 63 +    113811 aaCAATTACTTGTTTGAAAAAGAGAAAACAAGGCTCTGAGAAACAACTGCAACCCATAAATTT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363200 62 + 229942017 aGCAATTACTTGTTTGAAAAAGAGAAAACAAGGCTCTGAGAAAAAACTGCAACCCAT-AATTT
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836214 63 + 227556264 aaCAATTACTTGTTTGAAAAAGAGAAAACAAAGCTCTGAGAAACAACTGCAACCCATAACTTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400259 63 - 220367699 AACAATTACttctttcaaaaagagaaaacggGGCTCTGAGAAACAACTGCAACCCATAACTTA
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   7348 506 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=1208.000000
s hg38.chr1_KI270711v1_random         20888 4 +     42210 TTAT
s panTro4.chr1_GL389150_random        94240 4 +    113811 TTAT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363262 4 + 229942017 TTAT
i ponAbe2.chr1                    C 0 C 0
s papAnu2.chr1                    201400322 4 - 220367699 CTAG
i papAnu2.chr1                    C 0 C 0
s micMur1.scaffold_627                 8204 4 -    422738 CCAG
i micMur1.scaffold_627            N 0 I 21
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   7348 506 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e macFas5.chr1                    211836277 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=7125.000000
s hg38.chr1_KI270711v1_random         20892 12 +     42210 TATCCTTCTTCT
s panTro4.chr1_GL389150_random        94244 12 +    113811 TATACTTCTTCT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363266 12 + 229942017 GATCCTTGTTCT
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836277 10 + 227556264 --TCCTTGTTCT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400326 12 - 220367699 TGTCCTTGTTCT
i papAnu2.chr1                    C 0 C 0
e micMur1.scaffold_627                 8208 21 -    422738 I
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   7348 506 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=6808.000000
s hg38.chr1_KI270711v1_random         20904 7 +     42210 CTGTTTG
s panTro4.chr1_GL389150_random        94256 7 +    113811 CTGCTTG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363278 7 + 229942017 CTGTTTG
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836287 7 + 227556264 CTGTTTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400338 7 - 220367699 CTGTTTC
i papAnu2.chr1                    C 0 C 0
s micMur1.scaffold_627                 8229 7 -    422738 TTGTTTT
i micMur1.scaffold_627            I 21 N 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   7348 506 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=53423.000000
s hg38.chr1_KI270711v1_random         20911 79 +     42210 ATAAATATTTGTGTGTAGCGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGCTTAGTTCTTAAGTCTCCCCA
s panTro4.chr1_GL389150_random        94263 79 +    113811 ATAAATACTTGTGTGTTGCGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGCTTAGCTCTTACGTCTCCCCA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363285 79 + 229942017 ATAAATATTTCTGTGTCATGAGCCTGCCATGGCAATTTCTGCTCTTCCCCTGGCCCATCTTAGTTCTTACTTCACCCCA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836294 77 + 227556264 ATAAATATTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTTCCCTT-CCCTGACCCAGCTTAGCTCTTACTTCT-CCCG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400345 79 - 220367699 ACAAACCTGTGTGTATTGTGAGCATGCCATAGCAATTCCTGCCCTTCCCCTGGCCCAGCTTGGCTCTTACTTCTACCCT
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   7348 506 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=168369.000000
s hg38.chr1_KI270711v1_random         20990 172 +     42210 CTGAGCTGCTGTACTTCAGAGATTTACACACCTGTCCCCCTGCCTG--CCCCCATGGGGTCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCTCCTTGAACTGTCGCTCATTCCTCAGCACAGATTTTATGAGGTCTTTGCACTCTTCATATTCTG
s panTro4.chr1_GL389150_random        94342 172 +    113811 CCAAGCTGCTGTACTTCAGAGATTTACACACCTGCTCCCCTGCCTG--CCCCCATGGGGTCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCTCCCTGAACTGTCGCTCATTCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATATTCTG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363364 168 + 229942017 CCGAACTGCCATACTTCAGAGATTTACACACCTACCCACCTGCCT---CCCCCATTGGGTCCCCTCACCTTAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCT---TGAACTGCAGCTCATCTCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATATTCTG
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836371 172 + 227556264 CCGAGCTGCTGTACATCAGAGATTTACACACCTGCCCACCTGCCTG--CCCCCACGGGGCCCCCTCACCTGAGCTCCTCAGTTTGCTTGAGCTGCTCTGCAAGCTTCTCCCCCTTGAACTGCAGCTCATCCCTCAGCATAGATTTTATGAGTTCTTTGCACTCTTCATACTCTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400424 168 - 220367699 CCGAGCTGCTATACGTCTGAGATATAcacacctgcccacctgcctg------caTAAGGCCTCCTCACCTGAGCTCTTCAGCTTGCCCGAGCTGCTCTGCAAGCTTCTCCTCCTTCAACTGAAGCTCATCCCTCAGCATAGATTTTAGGAGGTCTTTGCACTCTTCATAGTCTG
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   7854 172 -     12850 CTGAGTTGCAGAACTTCAGAGATT--CATACTTTCCTACCTGTCCCATCTCCCAGCATGTTCTCTTACCTGAGCTCTTCAGCTTGCCTGGGCTTCTGCACTGGCTCCCCCTCCTGGAACTGCAGCTCCTCCCCCAGCACGGACTCCAATAAATCTTTGTACTCCTCACACTCTG
i tarSyr2.KE944318v1              I 506 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=93360.000000
s hg38.chr1_KI270711v1_random         21162 54 +     42210 AGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCA
s panTro4.chr1_GL389150_random        94514 54 +    113811 AGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCA
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104553412 54 - 229507203 AGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCA
i gorGor3.chr1                    N 0 I 2409
s ponAbe2.chr1                    107363532 54 + 229942017 AGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836543 54 + 227556264 AGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400592 54 - 220367699 AGAAAAGACAGACACACCGGCCTCAGTGAAAGACTGGACATGCTGCTGAGGTCA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   8026 53 -     12850 AGAAAAGACAGACACGCCTGCCTCAG-GGAAAGCTGGCAATACTCTTTTGGTCA
i tarSyr2.KE944318v1              C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=131974.000000
s hg38.chr1_KI270711v1_random         21216 140 +     42210 TTGCCTACAGGGCAGGAGCCAGGTCCATCCCAAGGACAAAACTCTCCCCAGTACCAGGGTCTAGACAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGAA-TTTCTGGCATCTGATCCTCCAAAATTTAGAGATG----AAGA
s panTro4.chr1_GL389150_random        94568 144 +    113811 TTGCCTACAGGGCAGGAGCCAGGTCCATCCCAAGGACAAAACTCTCCCCAGTACCAGGGTCTAGACAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGAC-TTTCTGGCATCTGATCCTCCAAAATTTAGAGATGAAGAAAGA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107363586 144 + 229942017 CTGCCTACAGGGCAGGAGCCACGTCCATCCCAAGGACAAAACTGTCCCCAGTACCAGGCTCTAGGCAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGAC-TTTCTGGCATCTGATCCTTCAAAATTTTGAGACGAGGAAAGA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836597 144 + 227556264 CTGCCTACAGGGCAGGAGGCAGGTCCATCCAAAGGACAAAACCGTCCCCGCTACCAGGCTCTAGGCAGGGATTTCCATATCTTTACTCTTCAGTCTCCCGAC-TTTCTGGCGTCGAATCCTCCAAAATTTAGAGATGAAGAAAGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400646 145 - 220367699 CTGCCTACAGGGCAGGAGCCAGGTCTATCCCAAGGACATAATTGTCCCCAATACCAGGCTCCAGGCAGGGATTTCCACCTCTTTACTCTTCAGTCTCCCGACTTTTCTGGCATCTCATCCTCCAAAATTTAGAGACACACAAACC
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   8079 138 -     12850 CTGTCTAGAGCAGAGAAGGAGGGCCTCTCCCTAGGAGATAAGAACCCCCAGTTCCAG--TCTAGGCAGGGATTTCCACATCATTATTTACCTACCTGCCGAC-TCCATGGCATCCGATACTACACAATTTGGAGATGAGAA----
i tarSyr2.KE944318v1              C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104553466 2409 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=416620.000000
s hg38.chr1_KI270711v1_random         21356 312 +     42210 GAACCTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAAGGAAGTGGAGTCAGAATTCACAGCCCCTGAGGTCTGACTCTGAATGCAGGGCCACTTTCCCAAGACTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGGCCCCTAGGACTATGGGACTGATGGCTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGCGAAAGATTTTAAAAATCTTTGATTTTTAAATCATATCTTCTGTTATGATTTTA--AGAATCATATCTGAAGCA
s panTro4.chr1_GL389150_random        94712 312 +    113811 GAACCTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAATGAAGTGGAGTCAGAACTCACAGTCCCTGAGGTCTGACTCTGAATGCGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTAGAGTCAGGAAGGCCCCTAGGACTACGGGACGGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGCGAAAGATTTTAAAAATCTTTGATTTTTAAATCATATCTTCAGTTATGATTTTA--AGAATCATATCTGAAGCA
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104555875 311 - 229507203 GAACCTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAACGAAGTGGAGTCAGAATTCACAGTCCCTGAGGTCTGACTCTGAATGCGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATG-AGTAGTGATTTCTTGTACAGTCGGGAAGGCCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGCGAAAGATTTTTAAAATCTTTGATTTTTAAATCATATCTTCAGTTATGATTTTA--AGAATCATATCTGAAGCA
i gorGor3.chr1                    I 2409 C 0
s ponAbe2.chr1                    107363730 310 + 229942017 GAAACTCAAGGGCACTTCAAGGAAGTTGATAAGATGATTCAACTACAAAGAAGTGGAGTCAGAATTCACAGCCCCTGAGGTCTGACTCTGAATGTGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCAGGAAGACCCCTAGGACTATGAGACTGATGGTTTCCCTTTTACTGGGTATTTCAAGGACAA--ATGTCAAAGACTTTAAAAACATTTGATTTTTAAATCATATATTCAGATATGATTTTA--AGAATCATATCTGAAGCA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211836741 309 + 227556264 GAAACTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAACCACAACGAAGTGGAGTCAGAACTCACAGCCCCTGAGGTCCAAGTCTGAATGTGGGGCCGCTTTCCCAAGCCTT-CAGCCTCTCCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTGTA-AGTCGGGAAGGCCCCTAGGACTATGGGACTGACGGTTTCCCTTTTACTGGGAATTCCAAGGACAAGTATGTCAAAGATTTT-TAAATCTTTGATTTTTAAATCATATCTTCAGATAATATTTTA--AGAATCATATCTGAAACA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201400791 312 - 220367699 GAAACTCAAGGGCACATCAAGGAGGTTGACAAGATGATTCAACCACAATGAGGTGGAGTCAGAATTCACAGCCCCTGAGGTCTGACTCTGAATGCGGGGCCACTTCCCCAAGCCTTGCAGCCTCTCCTCCAAAACACTGCACTGGGGCATGAAGTAGAGATTTCTCGGACAATTGGGAAGGCCCCTAGGACTATGGGACTGATGGTTTCCCTTTTAATGGGAATTTCAAGGACAACTAGGTCAAAGATCttaaaaatctttgatttttaaatcataactgcaGATATGATTTTA--AGAATCATAACGGAAACA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   8217 263 -     12850 ------AAGAGACACTCAGAGGCAGTTGACAAGATAATTTTACTG-AATTTGATAGAGTCTGAATTCACATCCCCTAAGGCCTGACAT--AGTAATGGGCCACTTTACCAAGTCTTGAAGTTTCTTACGGAAAAGTCTGTGCTGCA-CAGAAAGTCCTGATTTCCTGGGGAGTTGAGAAGGCCCCTAGGTCAATGGGACTCATGG-TTCCCTTTTACTGGAATTTTGAA-------------AAAAATCTAAA-------TGATTTTTAAA-----------AATACTATATTGATAAAATCATG---------
i tarSyr2.KE944318v1              C 0 C 0
e panPan1.JH650558                 26483590 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=5096.000000
s hg38.chr1_KI270711v1_random         21668 2 +     42210 TA
s panTro4.chr1_GL389150_random        95024 2 +    113811 TA
i panTro4.chr1_GL389150_random    C 0 C 0
s panPan1.JH650558                 26487521 2 -  32855946 TA
i panPan1.JH650558                I 3931 n 3931
s gorGor3.chr1                    104556186 2 - 229507203 TA
i gorGor3.chr1                    C 0 C 0
s ponAbe2.chr1                    107364040 2 + 229942017 TA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211837050 2 + 227556264 TA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401103 2 - 220367699 TA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   8480 2 -     12850 TA
i tarSyr2.KE944318v1              C 0 C 0
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=23615.000000
s hg38.chr1_KI270711v1_random         21670 20 +     42210 AAGTGTGACACATA-ACACCA
s panTro4.chr1_GL389150_random        95026 20 +    113811 AAGTGTGACACATA-ACACCA
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104556188 20 - 229507203 AAGTGTGACACATA-ACACCA
i gorGor3.chr1                    C 0 C 0
s ponAbe2.chr1                    107364042 20 + 229942017 AAGCATGAGACATA-AGACCA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211837052 20 + 227556264 AAGTATGAGACATA-AGACCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401105 21 - 220367699 AAGTATGAGACATATTTACCA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE944318v1                   8482 20 -     12850 AAATATTGGGCATA-GGACCA
i tarSyr2.KE944318v1              C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3628807 1720 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=107888.000000
s hg38.chr1_KI270711v1_random         21690 55 +     42210 TAAGGCCATGAAGGAAATATGCCCAAATGCTAATAAAGTTTGTGTTAATTTAGAA
s panTro4.chr1_GL389150_random        95046 55 +    113811 TAAGGCCATGAAGGAAATATGCCCAAATGCTAATAAAGTTTGTGTTAATTTAGAA
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104556208 55 - 229507203 TAAGGCCATGAAGGAAATATGCCCAAATGCTAATAAAGTGTGTGTTAATTTAGAA
i gorGor3.chr1                    C 0 C 0
s ponAbe2.chr1                    107364062 55 + 229942017 TAAGGCCATGAAGAAAATATGCCCAAATGCTAATAAAGTTTGTGTTAATTTAGAA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211837072 55 + 227556264 TAAGGCCATGAAGGAAATATGCCCAAATACTAATAAAGTTTGTGTTAATTTAGAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401126 55 - 220367699 CAAGACTATGAAGGAAACATGCCCAAATACTAACACAGTTTGTGTTAATTTAGAA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3630527 55 +  47448759 TAAGGCCATAAAAGAAATATGCACAAAGACTAATAACGTTTCCCTTATGCTAGAC
i calJac3.chr18                   I 1720 C 0
s tarSyr2.KE944318v1                   8502 54 -     12850 TAGGCCCAT-AAGGAAATATGCCCAAATACGAATAAATTTTATGTTAAATTAGAA
i tarSyr2.KE944318v1              C 0 I 130
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=24189.000000
s hg38.chr1_KI270711v1_random         21745 13 +     42210 ACAGCAGAATGAA
s panTro4.chr1_GL389150_random        95101 13 +    113811 ACAGCAGAATGAA
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104556263 13 - 229507203 ACAGCAGAATGaa
i gorGor3.chr1                    C 0 C 0
s ponAbe2.chr1                    107364117 13 + 229942017 ACAGCAGAATGAA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211837127 13 + 227556264 ACAGTAGAATGAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401181 13 - 220367699 ACAGTAGAATGAA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3630582 13 +  47448759 ACAGTAGAATGAA
i calJac3.chr18                   C 0 I 322
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   8556 130 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=38538.000000
s hg38.chr1_KI270711v1_random         21758 22 +     42210 GAACTAATAGATagtgtttact
s panTro4.chr1_GL389150_random        95114 22 +    113811 GAACTAATAGATagtgtttact
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104556276 20 - 229507203 gaactaat--atagtgtttact
i gorGor3.chr1                    C 0 I 1382
s ponAbe2.chr1                    107364130 22 + 229942017 GAACTAATAGATagtgtttact
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211837140 22 + 227556264 GAACTAATAGATagtgtttact
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401194 22 - 220367699 GAACTAATAGATAGTGTTTACT
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3630917 22 +  47448759 GAACTAATAGACagtgtttact
i calJac3.chr18                   I 322 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   8556 130 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=88992.000000
s hg38.chr1_KI270711v1_random         21780 76 +     42210 ctgtgccaataaatgttctaggagat-tgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggt
s panTro4.chr1_GL389150_random        95136 76 +    113811 ccgtgccaataaatgttctaggagat-tgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107364152 77 + 229942017 ctgtgccaataaatattctaggagatgtgacaggaaatagctcatgtaattcattgcagcaatttacagaggtaggt
i ponAbe2.chr1                    C 0 I 4128
s macFas5.chr1                    211837162 76 + 227556264 ctgtgccaataaacgttctaggagat-tgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401216 76 - 220367699 CTGTGCCCATAAATGTTCTAGGAGAT-TGATAAGAAATAGCTCATGTAACTCACTGCAGCAATTTACAGAGGTAGGT
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3630939 76 +  47448759 ctgtgccaacaactgtcccaggaaag-ttacaagaaataggccatctaattcagtgcagcaattgacagaggtaggc
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   8556 130 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=13573.000000
s hg38.chr1_KI270711v1_random         21856 19 +     42210 attattgtagtaccctctg
s panTro4.chr1_GL389150_random        95212 19 +    113811 attattgtagtaccctctg
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837238 19 + 227556264 attattgtagtaccctatg
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401292 19 - 220367699 ATTACTGTAGCACCCTAtg
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3631015 19 +  47448759 attattatagtatcctaca
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tarSyr2.KE944318v1                   8556 130 -     12850 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=46574.000000
s hg38.chr1_KI270711v1_random         21875 52 +     42210 aacaggtgaggaaac--agggacagaaaagacaagcaacttgGATGGAGCCCAG
s panTro4.chr1_GL389150_random        95231 54 +    113811 aacaggtgaggaaactgagggacagacaaaacaagcaacttgGATGGAGCCCAG
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837257 54 + 227556264 aacagatgaggaaactgaggtacagacaagacaagcaacttgGATGGAGTCCAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401311 54 - 220367699 aatagatgaggaaactgacggACACACAGGACAAGAAACTTGGATGGAGCCCAG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3631034 54 +  47448759 aacagatgacaaaactgagtaacaaacaaaagaagcaacttgGAGGGAGCTCAG
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE944318v1                   8686 52 -     12850 gacgcatgaagaaacccaggcacagagaagagaagcaac--GGCAGGAGCCCAG
i tarSyr2.KE944318v1              I 130 N 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=77284.000000
s hg38.chr1_KI270711v1_random         21927 125 +     42210 GAGACAGGCCCACGGTCTCTGCTCTGTACACTGCACTGCTATCTCCACACATTCTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGACTCTGTGCCCCAGGAAGCAGGACTTCATTCTCACCA
s panTro4.chr1_GL389150_random        95285 125 +    113811 GAGACAGGCCCACGGTCCCTGCTTTGCACACTGCACTGCTACCTCCACACATTCTCAGGTGCGATCTTTCTTCCTCTTTAGGAACAAGACTCTGTGTCCCAGGAAGCAGGACTTCACTCTCACCA
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837311 124 + 227556264 GATAGAGGCCCAGGGTCCCTGCTCTGCCCACTGCACTACTACTTCCACACATTGTCGGGTGCGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCCCAGGAAGCAGGACTT-CCTCTCACCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401365 124 - 220367699 GAGACAGGCCCAGGGTTCCTGCTCTGCACACTGCACTGCTACTTCCACACATTCTTGGGTac-atctttcttcctctttaggAACAAAAGCCTGTGCCCCAAGAAACAGGACTTCCCTCCCACCA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3631088 119 +  47448759 GAGACTGGCCCAGGGTCCCTCCTCTA-----TGCACTGCTGCCTTCACAAAGTCATGGGTGCCGTCGTTCTTCCTCTTTACCAACGAGAGCCTCTG-CAAAGACAGCAGGACGTCCCTCTGACCA
i calJac3.chr18                   C 0 I 2450
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=667.000000
s hg38.chr1_KI270711v1_random         22052 2 +     42210 AG
s panTro4.chr1_GL389150_random        95410 2 +    113811 AG
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837435 2 + 227556264 GG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401489 2 - 220367699 GG
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=1372.000000
s hg38.chr1_KI270711v1_random         22054 3 +     42210 CTA
s panTro4.chr1_GL389150_random        95412 3 +    113811 CTA
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837437 3 + 227556264 GTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401491 3 - 220367699 CTa
i papAnu2.chr1                    C 0 C 0
s otoGar3.GL873526                 15689751 3 +  42659167 ATA
i otoGar3.GL873526                N 0 I 39
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=5070.000000
s hg38.chr1_KI270711v1_random         22057 34 +     42210 CATTCTGCttcttattcttatttttatttatcat
s panTro4.chr1_GL389150_random        95415 34 +    113811 CTCTCTGCttcttattcttatttttatttatcat
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837440 26 + 227556264 CTCTCTGCttttt-------tatttatttattt-
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401494 23 - 220367699 ctctctgcctttt-------tgtttgtttc----
i papAnu2.chr1                    C 0 C 0
e otoGar3.GL873526                 15689754 39 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=-556.000000
s hg38.chr1_KI270711v1_random         22091 4 +     42210 --tatt
s panTro4.chr1_GL389150_random        95449 4 +    113811 --tatt
i panTro4.chr1_GL389150_random    C 0 C 0
s otoGar3.GL873526                 15689793 4 +  42659167 AACA--
i otoGar3.GL873526                I 39 I 39
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e papAnu2.chr1                    201401517 0 - 220367699 C
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e macFas5.chr1                    211837466 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=341.000000
s hg38.chr1_KI270711v1_random         22095 6 +     42210 agtatt
s panTro4.chr1_GL389150_random        95453 6 +    113811 attatt
i panTro4.chr1_GL389150_random    C 0 C 0
e otoGar3.GL873526                 15689797 39 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e papAnu2.chr1                    201401517 0 - 220367699 C
e gorGor3.chr1                    104556296 1382 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e macFas5.chr1                    211837466 0 + 227556264 C
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=-688.000000
s hg38.chr1_KI270711v1_random         22101 3 +     42210 att
s panTro4.chr1_GL389150_random        95459 1 +    113811 a--
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    104557678 3 - 229507203 att
i gorGor3.chr1                    I 1382 I 2385
s macFas5.chr1                    211837466 3 + 227556264 gtt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401517 2 - 220367699 -tt
i papAnu2.chr1                    C 0 C 0
e otoGar3.GL873526                 15689797 39 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=2152.000000
s hg38.chr1_KI270711v1_random         22104 7 +     42210 tttttaA
s panTro4.chr1_GL389150_random        95460 7 +    113811 tttttaC
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837469 7 + 227556264 ttttgac
i macFas5.chr1                    C 0 I 1
s papAnu2.chr1                    201401519 7 - 220367699 ttttgat
i papAnu2.chr1                    C 0 I 1
e otoGar3.GL873526                 15689797 39 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=100.000000
s hg38.chr1_KI270711v1_random         22111 1 +     42210 C
s panTro4.chr1_GL389150_random        95467 1 +    113811 C
i panTro4.chr1_GL389150_random    C 0 C 0
e otoGar3.GL873526                 15689797 39 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e papAnu2.chr1                    201401526 1 - 220367699 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e macFas5.chr1                    211837476 1 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=9126.000000
s hg38.chr1_KI270711v1_random         22112 24 +     42210 agtcttgccctgtcaccca-ggctg
s panTro4.chr1_GL389150_random        95468 24 +    113811 agtcttgccctgtcaccca-gactg
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837477 23 + 227556264 aatctt--cccgtcacccagggctg
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201401527 24 - 220367699 agtcttgccctgtcgccca-ggctg
i papAnu2.chr1                    I 1 C 0
e otoGar3.GL873526                 15689797 39 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=9145.000000
s hg38.chr1_KI270711v1_random         22136 23 +     42210 --gagtgcaatggcaaa-atcttggc
s panTro4.chr1_GL389150_random        95492 23 +    113811 --gagtgcaatggcaaa-atcttggc
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837500 23 + 227556264 --gagtgcaatggcgtg-atcttggc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401551 23 - 220367699 --aagtacaatggcatg-atcttggc
i papAnu2.chr1                    C 0 C 0
s otoGar3.GL873526                 15689836 26 +  42659167 AAAAACACACACACACACACATTGAT
i otoGar3.GL873526                I 39 I 5
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=2838.000000
s hg38.chr1_KI270711v1_random         22159 5 +     42210 tcact
s panTro4.chr1_GL389150_random        95515 5 +    113811 tcact
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837523 5 + 227556264 tcact
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401574 5 - 220367699 tcact
i papAnu2.chr1                    C 0 C 0
e otoGar3.GL873526                 15689862 5 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=1320.000000
s hg38.chr1_KI270711v1_random         22164  6 +     42210 --------------------------gcaacc
s panTro4.chr1_GL389150_random        95520  6 +    113811 --------------------------gcaacc
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837528  6 + 227556264 --------------------------gcaacc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401579  6 - 220367699 --------------------------gcaacc
i papAnu2.chr1                    C 0 C 0
s otoGar3.GL873526                 15689867 32 +  42659167 GAAAAAATAATTTTTAGGAAAATGATGCAAAT
i otoGar3.GL873526                I 5 I 9
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=5135.000000
s hg38.chr1_KI270711v1_random         22170 11 +     42210 tcagcctcctg
s panTro4.chr1_GL389150_random        95526 11 +    113811 tcagcctcctg
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837534 11 + 227556264 tctgcctcctg
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401585 11 - 220367699 tctgtctcctg
i papAnu2.chr1                    C 0 C 0
e otoGar3.GL873526                 15689899  9 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=8833.000000
s hg38.chr1_KI270711v1_random         22181 13 +     42210 ggttcaaaggatt
s panTro4.chr1_GL389150_random        95537 13 +    113811 ggttcaaaggatt
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837545 13 + 227556264 ggttcaaaagatt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401596 13 - 220367699 ggttcaaaggatt
i papAnu2.chr1                    C 0 C 0
s otoGar3.GL873526                 15689908 13 +  42659167 GGGTTGCAAGATT
i otoGar3.GL873526                I 9 I 36
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=2649.000000
s hg38.chr1_KI270711v1_random         22194 8 +     42210 ctcctgcc
s panTro4.chr1_GL389150_random        95550 8 +    113811 ctcctgcc
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837558 8 + 227556264 ctcctacc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401609 8 - 220367699 ctctggac
i papAnu2.chr1                    C 0 C 0
e otoGar3.GL873526                 15689921 36 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=697.000000
s hg38.chr1_KI270711v1_random         22202 2 +     42210 tc
s panTro4.chr1_GL389150_random        95558 2 +    113811 tc
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837566 2 + 227556264 ac
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401617 2 - 220367699 tc
i papAnu2.chr1                    C 0 C 0
s otoGar3.GL873526                 15689957 2 +  42659167 CC
i otoGar3.GL873526                I 36 I 1241
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C

a score=81249.000000
s hg38.chr1_KI270711v1_random         22204 183 +     42210 agcctcctgaacaggggtgattacagtcacctgccaccacgcccatctactttttgtatttttagtggagatggggtttctccatgtttcccaggctggtctcaaactcctgacctcgtgatctgcccgcctcagcctcccaaagggctgggattacaggagtgagccaccatgcacggccCC
s panTro4.chr1_GL389150_random        95560 183 +    113811 agcctcctgagcaggggtgattacagtcacctgccaccatgcccatctactttttgtatttttagtggagatggggtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccgcctcagtctcccaaaggactgggattacaggagtgagccaccatgcacggccCC
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837568 183 + 227556264 agaccccggagtagctgggattacaggcacctgccaccacgcccagctaatttttgtatttttagtggagatgcagtttctccatgttgcccaggctagtctcaaactcctgacctcgtgatctgcccgcctcagcctctcaaaatgctgggattacaggagtgagccactgtgcacagccCC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401619 183 - 220367699 agcctcccgagtagctgggattacaggcgcccgccaccacacccagctaatttttctaattttagtagagacggggtctctccacattgcccaggatggaatcaaactcctgatctcgtcatccagctgcctcagcctcccaaagtgctgggattacaggactgagccaccttGCACGGCCCC
i papAnu2.chr1                    C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e calJac3.chr18                     3631207 2450 +  47448759 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C

a score=53095.000000
s hg38.chr1_KI270711v1_random         22387 70 +     42210 TACTCCCTGCTCTTGATGCTGTCACTTATAGATAGCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAG-C
s panTro4.chr1_GL389150_random        95743 70 +    113811 TACTCCCTGCTCTTGATGCTGTCACTTACAGATAGCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAG-C
i panTro4.chr1_GL389150_random    C 0 C 0
s macFas5.chr1                    211837751 70 + 227556264 TACTCCCTGCTCTTGATGCTGTCACTTACAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAG-T
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401802 71 - 220367699 TACTCCCTGCTCTTGATGCTGTCGGTTATAGATATCACAGGTTCTATTAGGAGCAGACTCCTCTTGACGCC
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3633657 70 +  47448759 TACTCCCTGCTCTTGATGGTGCCACTTACAGAAAGCATAGGTTCTATTAGGAGCAAGGTCCCCTTTAAG-C
i calJac3.chr18                   I 2450 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C

a score=12808.000000
s hg38.chr1_KI270711v1_random         22457 34 +     42210 CCCTCAGAGCTGGTACTGGCTACTATCACCAAGT
s macFas5.chr1                    211837821 34 + 227556264 TCCTCAGAGCGGGTACTGGGTACTATCACCAACT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401873 34 - 220367699 CCCTCACAGCGGGTACTGTGTACTATCAACAAAT
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3633727 34 +  47448759 TCCTCACAGTGGGTACTGTCTGCTATCACCACGT
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=6760.000000
s hg38.chr1_KI270711v1_random         22491 10 +     42210 TTCCCTCAGA
s macFas5.chr1                    211837855 10 + 227556264 TTCCCTCAGG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401907 10 - 220367699 TTCCCTCAGG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3633761 10 +  47448759 TTCCCCCAGG
i calJac3.chr18                   C 0 I 2381
s tarSyr2.KE943985v1                 255904 10 -    294472 tctcctcatg
i tarSyr2.KE943985v1              N 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=71656.000000
s hg38.chr1_KI270711v1_random         22501 160 +     42210 GTCACTAGAACAGAGCTTTGCCTGTTGGGCCTCAACAGAAACTTGAACTGAATAAAAGTTCACTAGTCTCAGACATTTAGAACAACAGACTAGATGTTATTTGTCTGCAGGATCTTACATGGTACAGAGAGGATTCTTGAAAACATGATTGAGCCTCTTG
s macFas5.chr1                    211837865 160 + 227556264 GTCCCTAGAACAGAGCTTTGCCCACTGGGCCTCAACAGAAGCTTGAACTGAATAAAAGTTCACTAGTCCCAGACATTTAGAACAACAGACTAGATGTTACTTGTCTGCAGGATCTTATATGGTACAGACAGGATTCTTGAAAACATGATTGAGCCTCTTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201401917 158 - 220367699 GTCCCTAGAACAGAGCTTGGCCTATTGGGCCTCAACAGAAGCTTGAACTGAATAAAA-TTCACTAGCCCAAGACATTTAGAACAACAGACTAGATGTTATTTGTCTGCCAGATCTTATATGGTACAGAGAGGATTCCTGAAAACATGATTTAGCCTC-TG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3636152 160 +  47448759 GTTCCCAGAACACAGCTTTGCCTACTGGGCCTCAGCAGAAACTGGAACCAAATCGAAGTTCAGTAGCCTCAGACACGTAGACCAACAGACTAGATGCTACTTGTCTGCAGGATCTTATATGGTACAGGGAGGATTCCTGTAAACATGATTTAGCCATTTG
i calJac3.chr18                   I 2381 I 2050
s tarSyr2.KE943985v1                 255914 111 -    294472 -gtgttggcacagtgctttgcaaatgagtgcacagtaaaagtttgAAATG-------------TAACCTGAGATATTCAAACCAACAG------TGACATATGTTTGTAGAAGCTGACAC----------------------ACATTATTGAA-------
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=11412.000000
s hg38.chr1_KI270711v1_random         22661 42 +     42210 GAG-AAAACAGGTCATTCTGTGCCTGTGTCAGAAA-TCAATAAA
s macFas5.chr1                    211838025 43 + 227556264 GAG-AAAACAGGTCGTTCTGTGCCTGTGTCAGAAAATCAACAAC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402075 40 - 220367699 GAG-AAAACAGGTCATTCTGTGCCT-TGTCTGAAA--CCATAAC
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3638362 43 +  47448759 GAGTAAAACAGGTGGTTCTGTGCCTGTGTCAGAAA-TTAATAGG
i calJac3.chr18                   I 2050 I 299
s tarSyr2.KE943985v1                 256025 30 -    294472 ------AAAAGACAGTTTAGTGCCTGAACCAAGAT-T-------
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=21859.000000
s hg38.chr1_KI270711v1_random         22703 63 +     42210 TGGCAGTTTAACTCTAGTCCCACCCCCACC-TGATTGCAAACAT-GGAAAGTTGCTAAATATTTT
s macFas5.chr1                    211838068 62 + 227556264 TGGGATTTGAACTCCAGTCCCACCCCCACC-TGACTGCAAACA--GGAAAGTTACTAAATACTTT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402115 63 - 220367699 TGAGATTTTACCTCTAGGCCCATCCCCACC-TGATTGCAAACAT-GGAAAGTTTTGAAATACTTT
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3638704 64 +  47448759 TGGGATTTTAATCCCAGTCCCACACCCACC-TTATTGCAGACATGGAAAAGTTGCTAAATACTTT
i calJac3.chr18                   I 299 C 0
s tarSyr2.KE943985v1                 256055 46 -    294472 ------TCTGTCTCTATTCCTCCCTACATCATCCTTGCAAACTT-------------TACCCCTT
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e gorGor3.chr1                    104557681 2385 - 229507203 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=-1300.000000
s hg38.chr1_KI270711v1_random         22766 1 +     42210 -G
s gorGor3.chr1                    104560066 1 - 229507203 -G
i gorGor3.chr1                    I 2385 N 0
s macFas5.chr1                    211838130 1 + 227556264 -G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402178 1 - 220367699 -G
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3638768 1 +  47448759 -G
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE943985v1                 256101 1 -    294472 T-
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=39032.000000
s hg38.chr1_KI270711v1_random         22767 101 +     42210 GGACCTCTG-TCTTCCAACTTTAACAAAATGTTA-------AAATACCCAT---TTCTGTTTTCCTAGAAGTATGGGGAGGATGACATTATTTTAGATGGAGAGAGCACTTA--------------------
s macFas5.chr1                    211838131 101 + 227556264 GTACCTCTG-TCTTCCAACTTTAACAAAATGTTA-------AAATACCCAT---TTCTGTTTTCTTACAAGTACAGGAAGGAAGAAATTATTTTTGATGGAGAGAGCATTTA--------------------
i macFas5.chr1                    C 0 I 57645
s papAnu2.chr1                    201402179 101 - 220367699 GTACCTCTC-TCTTCCAACTTTAACAAAAGGTGA-------AAATACCCAT---TTCTATTTTCCTACAAGAACGGAAAGTATTACATTACTTCTGATGGAGAGAGAATTCC--------------------
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3638769  98 +  47448759 --GCCTCTG-TCTTCCATCTTTAACAAAATGTTA-------AAATACCCAT---TTCTATTTTC-TGCAAGTATGAGGAGGACGAAATTAATTTTGATGAAGAAACTGGTTA--------------------
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE943985v1                 256102 132 -    294472 GAGCTTCAGTTTTTCCATCCTCAACAAATTGCAAGTAAAATAAATAGTAATAAATACTTCCTTTCTGGAAGTATAGTCAGGAAAAAATTATTTTTTATGAAAAAAAGAAGAAGAAGGTCTGAAGATTGTTTT
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=5022.000000
s hg38.chr1_KI270711v1_random         22868 13 +     42210 GTTTCTCAGAGAG
s macFas5.chr1                    211895877 13 + 227556264 GTTTCTCAGAGAG
i macFas5.chr1                    I 57645 C 0
s papAnu2.chr1                    201402280 13 - 220367699 GTTTCTCACAGAG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3638867 12 +  47448759 GTTTCTCAAGAC-
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE943985v1                 256234 13 -    294472 GCTTCTCTGAGGA
i tarSyr2.KE943985v1              C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94865570 5493 + 229590362 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=208392.000000
s hg38.chr1_KI270711v1_random         22881 275 +     42210 AAGATAGGACTTCGTTCATCACTTTCGTGACGGTGAGCCTATAGATCTTACTGTATTTGTTCTGCTGGTTGGCCAGGAAGCAGGC---CAGTTGAGTTACAAAACATTTCTCTTTGAGGTTTCTGAACTGCTGTTTCTTCTCTGCCAGCTGGGGGCGCAATTTCTCATTCATTTCTAGAATGTTCATCTCTGCCTTCTCGCTGGACAAAGGGCCGGCTGATACCACCATGCTGACGTTTGTGGCAGAAGAGGTGGGGCCAGGGACTGGGGAGAAGAAA
s rheMac3.chr1                     94871063 275 + 229590362 AAGACAGGACATCATTCATCACTTTCGTGATGGTGAGCCTATTGAACTTACGGTATGTGTTCTGCTGGTTGGCCAGGAAGTAGGC---CACTTGAGTTATAAGAAATTTCTCTTTGATATTTCTGAACTGCTGTTTGTTCTCTGCCAGCTGGGGATGCAAATTCTCACTGATTTCTAGGATGTTCATCTCTGCCTTCTCACTGGACCAAGGGCCAGCAGATACCACCATGCTGACATTTGTTGCAGAAAAGGTGGAGCTAGGGACTGGGGAGAATAAA
i rheMac3.chr1                    I 5493 C 0
s macFas5.chr1                    211895890 275 + 227556264 AAGACAGGACATCATTCATCACTTTTGTGATTGTGAGCTTAGGGAACTTACTGTAAGTGTTCTGCCCCTTGGCCAGAAAGTAGGC---CACTTGAGTTACAAGATATTTCTCCTTGGTGTTTATAAACTGACGTTTGTTCTCTGCCTGCTGGGGGTGCAGTTTCTCGTTGATTTCTAGAGTATTCATCTCTGACTTCTCACTGGACCAAGGGCCCGCAGATACCACCATGCTGACGTTTGTGGTAGAAGAGGTGGAGCCAGGGACTGGGGAGAAAAAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402293 271 - 220367699 AAGACAGGACA----TCATCACTTTTGTGATGGTGAGCTTAGGGAACTTACTGTAAGTGTTCTGCCCCTTGGCCAGAAAGTAGGC---CACTTGAGTTACAAGATATTTCTCCTTGGTGTTTATGAACTGACGTTTGTTCTCTGCCTGCTGAGGGCGCAGTTTCTCGTTGATTTCTAGAGGATTCATCTCTGACTTCTCATTGGACCAAGGGCCCGCAGATACCACCATGCTGACGTTTGTGGTAGAAGAGGTGGagccagggactggggagaaaAAA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3638879 275 +  47448759 AACACAGGACATCATTCATCAGTTTCGTGGTGGTGAACCTATAGAACTTACTGTAGGCCTTCAGCTGGTAGTTCAGGAAGTAGGC---CACCTGACTCAGAAGAAGTCTATTTTTGCTGGCTCTGAAATTTGCTTTGTTTTCTTCCTGCTGGGAGCAGGATTTCTCAATGCCTTCTGCAACGTTCACCTCTGTGTTTTCTCTGGAAGGAGGCTTGCCAGATGCCCCTGTGCTGATGTTTGGGGCAGAACACAGATAGCCAGGGACTGGGGAGAAGAAA
i calJac3.chr18                   C 0 C 0
s tarSyr2.KE943985v1                 256247 275 -    294472 AGGATGGATGATCATTTTTCACTTAAGGGACCATGCCCCTTTATGACTTACTGCATATCTTCAGGTGGTTGGCCAGGGTATAAGCAGTAGCTTTGGATATGAGATATTTCTTTGTGAGGTCTCGGAAGTTCTGTTTGCTTTTTTCCAGCTGAGAGCACAAGTACTGGTTGGCTTCCAGGATGTTCATTTCTTCTCTTGGATCTGAAAAAGAGGTGAGAGATACTACCATGCTGAAGCCTGTGGTAGGAT---TAGAGCCAGGACTTGGGAAGAAGAAA
i tarSyr2.KE943985v1              C 0 N 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=38170.000000
s hg38.chr1_KI270711v1_random         23156 52 +     42210 GGCAAACACATGATGGGTTAAAAACTGGTGAAATCAAATAGGCTTAATCAGG
s rheMac3.chr1                     94871338 52 + 229590362 CACAAACACAGGATAGGTTAAAAACTGGTGAAATCAAATAGGTTTAATTAGG
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211896165 52 + 227556264 TCCAAACACATGATGGGTTAATAACTGGTGAAATCAAATAGGTTGAATCAGG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402564 52 - 220367699 TCCAAACACATGATGGGTTAATAACTGGTGAAATCAAATAGGTTGAATCAGG
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3639154 52 +  47448759 CCCAAACACATGATGGGTTAGAAACTGGTGACATCAAGTTGGTTTAATCGGG
i calJac3.chr18                   C 0 C 0
e otoGar3.GL873526                 15689959 1241 +  42659167 I
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=755.000000
s hg38.chr1_KI270711v1_random         23208 1 +     42210 A
s rheMac3.chr1                     94871390 1 + 229590362 A
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211896217 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402616 1 - 220367699 A
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3639206 1 +  47448759 A
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873526                 15691200 1 +  42659167 G
i otoGar3.GL873526                I 1241 N 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=11036.000000
s hg38.chr1_KI270711v1_random         23209 13 +     42210 CTGAGGGATGTCA
s rheMac3.chr1                     94871391 13 + 229590362 CTGAGGGATGTCA
i rheMac3.chr1                    C 0 T 5829
s macFas5.chr1                    211896218 13 + 227556264 CTGAGGGATGTCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402617 13 - 220367699 TTGAGGGATGTCA
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3639207 13 +  47448759 CTGAGCGATGTCA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=57672.000000
s hg38.chr1_KI270711v1_random         23222 134 +     42210 CTGGCAGCCTTGTCTACTTATTTGAAGATGATGTTTCCCTGGTTTCACTCTTGTCATCTCCAGTCTTGATCTCCTTTAAGTCAACTTGTCTTAGCTATGCAGTCACCTTGAAACCAAGACATAAACACTTCTAC
s macFas5.chr1                    211896231 134 + 227556264 CTGACAGCCTCGTCCACTGATTTGAAGATGCTGTTTCCCTGGTTTCACTCTTCTCATCTCCACTCTTGATCTCCTTTAAGTCAACGTGTCTGAGCTATGCAGTCACCTTGAAATCAGGACACAAACACTTCCAC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402630 134 - 220367699 GTGACAGCCTCGTCCACTGATTTCAAGATGCTGTTTCCCTGGTTTCACTCTTCTCATCTCCACTCTTGATCTCCTTTAAGTCAACTTGTCTGAGCTACGCAGTCACCTTGAAACCAGGACACCAACACTTCCAC
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3639220 134 +  47448759 CTGACAGCCTTGCCTGTTGATTTGAAGATGTTCTTTCCCTGCTTTTACTCTTCTTACCTCCTCTCTCATTCTCTTTAAAGTCAACTTGTCTTAACTACTCAGTCACCTTGAAACCAGGAAATTAACACTTCTAC
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197950688 2608 - 215897965 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=607.000000
s hg38.chr1_KI270711v1_random         23356 5 +     42210 ACTTT-
s macFas5.chr1                    211896365 4 + 227556264 -TTTT-
i macFas5.chr1                    C 0 I 1
s papAnu2.chr1                    201402764 4 - 220367699 -TTTT-
i papAnu2.chr1                    C 0 I 1
s nasLar1.chr1                    197953296 4 - 215897965 -CCTT-
i nasLar1.chr1                    I 2608 I 895
s calJac3.chr18                     3639354 5 +  47448759 -CTTTA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=7229.000000
s hg38.chr1_KI270711v1_random         23361 15 +     42210 TCTTGCTTATAAGTT
s macFas5.chr1                    211896370 15 + 227556264 TCTTGCTTAGAAGTT
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201402769 15 - 220367699 TCTTGCTTAGAAGTT
i papAnu2.chr1                    I 1 C 0
s calJac3.chr18                     3639359 15 +  47448759 TCTTGCTTATGAGTT
i calJac3.chr18                   C 0 I 18208
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477  0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=91496.000000
s hg38.chr1_KI270711v1_random         23376 404 +     42210 TCTATAAAGCAAGGCTTGGCCCTGAGATTTTTACCCCATGAGTGGCCAATGTTTCTGTGTAGCACAAAAGGTTTCATTTTGCTTTTTTAATttttttctt---------------ttttggttttttgttttttgtttgagacggagtctcactctgtcacgcaggctgcagtgcagaggcacaatctcagctcactgccacctctgcctcccgggttcaagcgattctcatccctcagcctgccaaacatctgggattacaagcgccaagtaacatgccagctaatttttgtatttttagtagagatggggtttcgccatcttggacaggctggtttcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggatta-agatgtgag-ccagcacccctggtcA
s macFas5.chr1                    211896385 414 + 227556264 TCTATAAAGCAAGGCTGGGCTCTGAGCTTTTTACCCCATGAGGGGCCAATGTTTCTGTGTAGCTCAAGAGAttgttttttgtttcgttaatttttttgtttgattggttggttgGttttggttttttatgttttgtttgagggggagtctcactgtgtcgcccaggctg-------gtggcacgatctcagctcactgcaacctctgcctcctgggttcaagtgattctcatgcgtcagcctcccaagtagctgggattacaggcaccaaccaccatgccagctattttttgtatttttagtagagatgcaatttcgccatgttggccaggctgctttcgaactcctgacctcaggtgatccgcccaccttgtcctcccaaagtgctgggattacagatgtgagccCAGCGACCCTGGCCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201402784 413 - 220367699 TCTATAAAGCAAGGCTGGGCTCTGAGCTTTTTACCCCATGAGTGGCCAATGTTTCTGTGTAGCTCAAgagattgttttttgtttcgttaatttttttgtttgattggttggttggtttgggttttttatgttttgtttgagagggagtctcactgtgtcgcccaggctg-------gtggcacgatctcagctcactgcaacctctgcctcctgggttcaagtgattctcatgcctcagcctcccaagtagctgggattacaggcaccaaccaccatgccagctattttttgtatttttagtagagatgcaattttgccatgttggccaggctgctttcgaactcctgacctcaggtgatccgcccacctcgccctcccaaagttctcggattacagatgtgag-ccagcgACCCTGGCCA
i papAnu2.chr1                    C 0 T 6231
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=482.000000
s hg38.chr1_KI270711v1_random         23780 5 +     42210 GAGAC
s macFas5.chr1                    211896799 5 + 227556264 GAGAC
i macFas5.chr1                    C 0 I 5642
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e papAnu2.chr1                    201403197 6231 - 220367699 T
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=0.000000
s hg38.chr1_KI270711v1_random         23785 2 +     42210 At
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e papAnu2.chr1                    201403197 6231 - 220367699 T
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e macFas5.chr1                    211896804 5642 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=58091.000000
s hg38.chr1_KI270711v1_random         23787 307 +     42210 tttttttttttttttttgagatggagtctcgctctgtctcccaggctggagtgcagtggcacaatctaggctcactgtaagctccggttcctgggttcatgccattctcctgccacagcctcccgagtagctgggactacaggcgcccaacaccgcgcccagctaatttttttttttttttgtatttttagtaacgacggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatccacccgccccggcctcccaaagtgctgggattacatgtgtgag-ccaccgcgcccggcc
s macFas5.chr1                    211902446 298 + 227556264 ttttttatgttttgtttgagagggagtctcactctgtcgcccaggctggagtgcagtggcacgatctcagctcactgcaacctctacctcctgggttcaagtgattttcgtggctcagcttcccaagtagctgggattacaggcacaaaccaccatg-ccagcta----------ttttttgtatttttagtagagatgcaatttcgccatgttggccaggctgctttcgaactcctgacctcaggtgatctgcccacctcaccctcccaaagtgctgggattacagatgtgag-ccagcgaccctggcc
i macFas5.chr1                    I 5642 I 1
s papAnu2.chr1                    201396966 292 - 220367699 ttttttatgttttgtttgagagggagtctcactgtgtcgcccaggctg-------gtggcacgatctcagctcactgcaacctctgcctcctgggttcaagtgattctcatgcctcagcctcccaagtagctgggattacaggcaccaaccaccatg-ccagcta----------ttttttgtatttttagtagagatgcaattttgccatgttggccaggctgctttcaaactcctgaccttaggtgatccgcccaccttgtcctcccaaagtgctgggattacagatgtgagcccagCGACCCTGGCC
i papAnu2.chr1                    T 6231 I 5939
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=72621.000000
s hg38.chr1_KI270711v1_random         24094 312 +     42210 GAGACTTCTTATTAATAGCTGAGACAAGCCAATGAAAAGGAGAGAGAGTCTAGCCTGAGAGGAGCGAACCAGGGTGGGAGGATCGTctcagccgatcctcccacctaagtctcctgagcagttgggactataggcacgcagcaccatacctgcctaattttttgtattctttgtaaagatgggtttcaccatattgtccaggctggtcttcaactcctgaactcaagtcatcctcccacttgggccttccaaagtgctgtgattatacgtgtgagtcacagcacctagcTCCATCCTAGTTTCTGACTAAAA
s macFas5.chr1                    211902745 312 + 227556264 GAGACTTCTTATTAACAGCTAAGACAAGCCAATGAAAAGGAGAGAGAGTCTAGCCTGAGAAAAGTGAATGAGGGTGGGAGGATCATCTGAGCcaatccttgcacctaagcctcctgagcagttgggactataggggcaaaggaacatgcctggctaatgttttgtattctttgtaaagatgggtttcaccatattctccagtctgctcttgaactcctgaattcaaatgatcctcccacttgggcctcccaaagtgctgcgaatatatatgtcagtcaccgcAGCTAGCTTCATCCTAGTTTCTGAGTAAAC
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201403197 310 - 220367699 GAGACTTCTTATTAACAGCTAAGACAAGCCAATGAAAACGAGAGAGAGTCTAGCCTGAGAAAAGTGAAtga--gtgggaggatcatctgagccaaTCCTcgcacctaagcctcctgagcagttgggactataggggcaaaggaacatgcctggctaatgttttatattctttgtaaagatgggtttcaccatattctcaagactgctcttgaactcctgaattcaaatgatcctcccacttgggcctcccaaagtgctgcgaatATATATGTCAGTCACCGCAGCTAGCTTCATCCTAGTTTCTGAGTAAAC
i papAnu2.chr1                    I 5939 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e ponAbe2.chr1                    107364229 4128 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=56408.000000
s hg38.chr1_KI270711v1_random         24406 148 +     42210 CAATATGTGCGTATACAGCCTGTCCTCAGAATTGATCTTCCATAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGAGAATGTTTACAGCATCCTGACATTCATCATGAGAGGATTCTCTGTCTACAACCAGAG
s ponAbe2.chr1                    107368357 142 + 229942017 CAATTTGTGTGTATAGAGCCTGTCTTCAGAGTTTATCTTCCTCAGCCTAGAGAGAGGCATGAGACACAAGGAAAATAGAGGCTACCTGGGATAATGTGTACAGCATCCTCCCATTCAACATGAGAAGATGA---GTC---AATGAGAG
i ponAbe2.chr1                    I 4128 C 0
s macFas5.chr1                    211903057 148 + 227556264 CAATATGTACCTATACGGCCTGTACTCAGAATGGATCTTCCGTAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGACAAGGTTTAGAGCATCCTGCCATCCATCTGGAGACGATCCACGGTCTATAAGCAGAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201403507 147 - 220367699 CAATATGTACCTATACGGCCTGTACTCAGAATGGATC-TCCGTAGCCTAGACAGAGGTATGAGACACAAGGAAAATAGAGGCTACCTGGGACAAGGTTTAGAGCATCCTGCCATCCATCTGGAGACGATCCACAGTCTATAAGCAGAG
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197953300 895 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=910.000000
s hg38.chr1_KI270711v1_random         24554 1 +     42210 T
s ponAbe2.chr1                    107368499 1 + 229942017 T
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211903205 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201403654 1 - 220367699 T
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197954195 1 - 215897965 T
i nasLar1.chr1                    I 895 I 9306
e panPan1.JH650558                 26487523 3931 -  32855946 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477 0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=58554.000000
s hg38.chr1_KI270711v1_random         24555 124 +     42210 TGAGTTGACTTTGTCTTCCTCAAATGTGATGTTGATGTTCTTGTGAGGCTGGTTGGAGTCACAAGGGCCGTGGCTATTTGAACAAGTGATGGCACATTCCTCCAGTGAGTCCTCAGGGACTTTG
s ponAbe2.chr1                    107368500 124 + 229942017 TGAGTCGACTTTGTCTTCCTCAAATGTGATTTTGGTTTTCCTGTGTGGCTGGTTGGAGTCACAAGGGCTGTGGCTATTTGAACATGTGACGGCATATTCCTCCAGTGAGTCCTCAGGGACTTCG
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211903206 124 + 227556264 TGAGTCCACTTGGTCTTCCTCAAATGTGATTTTGGAGTTCTTGTGAGGCTGGTTGGACTCAGAAGGGCCATAGCTATTTGAACAAGTGACGGCACATTCCTCCACTGAGTCCTCAGGGACTTCC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201403655 124 - 220367699 TGAGTCCACTTGGTCTTCCTCAAATGTGATTTTGGAGTTCTTGTGAGGCTGGTTGGACTCAGAAGGGCCATAGCTATTTGAACAAGTGACGGCACATTCCTCCACTGAGTCCTCAGGGACTTCC
i papAnu2.chr1                    C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e chlSab2.chr20_KE148050v1_random   1021477   0 -   1280666 C
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=106686.000000
s hg38.chr1_KI270711v1_random         24679 140 +     42210 CTTTCTTCAGCCTTCTGCACCTCCCTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGCGGCATTAAGACAGTGGTCCCAGAAAGCAAAA
s ponAbe2.chr1                    107368624 140 + 229942017 CTTTCTTCAGCCTTCTGAACCTCACTGATGAGCCAGGTGGGACAGAGATGACAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCTGGTTTTGACAGGTGGCATTAAGAGAGTGGTCCCAAAAAGCAAAA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211903330 136 + 227556264 TTTTCTTCAGCCTTCCGCACCTCCCTGATG----AGGTGAGATAGAGATGCCAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGACCTAGCCGGTTTTGACAGGAGGCATTAGGAGAGTGGTCACAGAAAGCAAAC
i macFas5.chr1                    C 0 I 1
s papAnu2.chr1                    201403779 136 - 220367699 TTTTCTTCAGCCTTCCGCACCTTCCTGATG----AGGTGAGATAGAGATGCCAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAGTCCTAGCCGGTTTTGACAGGAGGCATTAGGAGAGTGGTCACAGAAAGCAAAC
i papAnu2.chr1                    C 0 I 1
s chlSab2.chr20_KE148050v1_random   1021477 140 -   1280666 CTTTCTTCGGCCTTCTGCACCTTCCTGATGAGCCAGGTGGGACAGAGAAGAAAGAAGATTAAACACAGAGGGATTGGACCCCAGGGAATCCTAGCTGGTTTTGGCAAGAGGCAAAAGGAGAGTAGTCCAAGAAAGCAAAC
i chlSab2.chr20_KE148050v1_random C 0 I 1
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=91.000000
s hg38.chr1_KI270711v1_random         24819 1 +     42210 T
s ponAbe2.chr1                    107368764 1 + 229942017 T
i ponAbe2.chr1                    C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e papAnu2.chr1                    201403915 1 - 220367699 I
e macFas5.chr1                    211903466 1 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1021617 1 -   1280666 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=153192.000000
s hg38.chr1_KI270711v1_random         24820 191 +     42210 GGAGGTTCCCTTTAAGGGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAACATGGCTGCCATGGGAGCCAGAGAGGAAGAGAGCAGCTGGTGTTCAGTGCACTGGACAGATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTATGGTACAGACATGACACTTGGCACACATAGAGAAACACGACA
s ponAbe2.chr1                    107368765 191 + 229942017 GGAGGTTCCCTTTAAGAGGGAACATGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGGAACCAGAGAGGAAGAGAGCAGCTGGTGTTCATTGCACTGGACACATAGGAGCTGAGGAGGATGAAGACTCAGCTATCCCTGTATGGTACAGACATGACACTCGGCACACATAGAGAAACACGACA
i ponAbe2.chr1                    C 0 C 0
s macFas5.chr1                    211903467 191 + 227556264 GGAGGCTCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACACAGCATGGCAGCCACGGGAGACAGAGAGGAAGAGACCAACCGGTGTTCATTTCACTGGAGAGATAGGAGCTGAGAAAGATGAAGACTCAGCTATCCCTGTTCGGTACAGATATGACACTCGCCACACACAGAGAAACACAACA
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201403916 191 - 220367699 GGAGGCTCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACACAGCATGGCGGCCatgggagacagagaggaagagagcaaCTAGTGTTCATCGCACTGGACAGATAGGAGCTGAGAAAGAAGAAGACTCAGCTATCCCTGTACAGTACAGACATCACACTtgccacacacagagaaacacaacA
i papAnu2.chr1                    I 1 C 0
s chlSab2.chr20_KE148050v1_random   1021618 187 -   1280666 ----GTTCCCTTTAAGAGGGAACAGGCAATCCTCTTCTCTCTGCAACAGAGCATGGCTGCCATGGGAGCCAGAGAGGAAGAGAGCAACTGGTGTTCACTGCACTGGAAAGATAGAAGCTGAGGAGGATGAAGACTCAGCTGTCCCTGTACAGTACAGACATGACACTCGGCACACACAGAAAACCACAACA
i chlSab2.chr20_KE148050v1_random I 1 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e rheMac3.chr1                     94871404 5829 + 229590362 T
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=78071.000000
s hg38.chr1_KI270711v1_random         25011 60 +     42210 GCTGCCGCACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGCGAATGCG
s ponAbe2.chr1                    107368956 60 + 229942017 GCTGCCACACCCTGTGTCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCG
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94865575 60 + 229590362 GCTGCTATACCCTGTGTCTAAGCTGGGCTGAATTTCACATACTGTGGCTAAGGGAATGCA
i rheMac3.chr1                    T 5829 I 1382
s macFas5.chr1                    211903658 60 + 227556264 GCTGCCACACCCTGTGTCTAAGTTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404107 60 - 220367699 GCTGCCACACCCTGTGTCTAAGTTGGTTTGAATTTCACATACTGTGGCCAAGGGAATGCA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021805 60 -   1280666 GCTGCCACACCCTGTGCCTAAGCTGGGTTGAATTTCACATACTGTGGCCAAGGGAATGCA
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=59871.000000
s hg38.chr1_KI270711v1_random         25071 51 +     42210 GGCTTTTGGCCCATCATAGATGCCAGAGAGGGTGAGCCTCCTAGACATTTT
s ponAbe2.chr1                    107369016 51 + 229942017 GGTTTTTGGCCCATCGTAGATGCCAGAGAGGGTGTGCCTCCTACACATTTT
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867017 51 + 229590362 GGCCTTTGGCCTATCATAGCTGCCAGAGAGGGCGTGCCTCCTAGACCTTTT
i rheMac3.chr1                    I 1382 C 0
s macFas5.chr1                    211903718 51 + 227556264 GGCTTTTGGCTCATCATAGATGCCAGAGAGGGTGTGCCTCTTAGACCTTTT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404167 51 - 220367699 GGCTTTTGGCCCATCATAGATGCCAGACAGGGTGTGCCTCTTAGACCTTTT
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021865 51 -   1280666 GGCTTTGGGCCCATCGTAGATGCCAGAGAGGGTGCGCCTCCTAGACCCTTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=1179.000000
s hg38.chr1_KI270711v1_random         25122 1 +     42210 T
s ponAbe2.chr1                    107369067 1 + 229942017 C
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867068 1 + 229590362 T
i rheMac3.chr1                    C 0 I 1
s macFas5.chr1                    211903769 1 + 227556264 T
i macFas5.chr1                    C 0 I 1
s papAnu2.chr1                    201404218 1 - 220367699 T
i papAnu2.chr1                    C 0 I 1
s chlSab2.chr20_KE148050v1_random   1021916 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 I 1
s rhiRox1.KN297205v1                  32157 1 +    681187 T
i rhiRox1.KN297205v1              N 0 N 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=7300.000000
s hg38.chr1_KI270711v1_random         25123 6 +     42210 ATATGT
s ponAbe2.chr1                    107369068 6 + 229942017 ATATGT
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867070 6 + 229590362 ATAGGT
i rheMac3.chr1                    I 1 C 0
s macFas5.chr1                    211903771 6 + 227556264 ATATGT
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201404220 6 - 220367699 ATATGT
i papAnu2.chr1                    I 1 C 0
s chlSab2.chr20_KE148050v1_random   1021918 6 -   1280666 ATATGT
i chlSab2.chr20_KE148050v1_random I 1 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e tupBel1.scaffold_4747.1-308766     100837 134 +    308766 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=10679.000000
s hg38.chr1_KI270711v1_random         25129 12 +     42210 TACCACCCATTA
s ponAbe2.chr1                    107369074 12 + 229942017 TACCACCTATTA
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867076 12 + 229590362 TACAACCCATTA
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211903777 12 + 227556264 CAAAATCCATTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404226 12 - 220367699 CAAAACCCATTA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021924 12 -   1280666 TACCACCCATTA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s tupBel1.scaffold_4745.1-59635       57014 12 +     59635 TGTCATGCTTTC
i tupBel1.scaffold_4745.1-59635   I 8133 N 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=312057.000000
s hg38.chr1_KI270711v1_random         25141 269 +     42210 CTTGCTCCCGAGTATTCAGTGTTACCTGGGGGCAGATGATTCCAGTACTTTCTCAGCCTCCTCAACTTGAACATCTTCATCCTCATCTTCGTCATTTTCTGTAAATACA-AAATGTTCGTTCAGATATTTCCCACTTCCCATTCTGCAAGCACAGTCAGCCCAATGTGCACAGAGACATGAACATCTATGTGTGGTTCAGCA---TTGTACTGAAAACTGTCATGTTTTATCTTTCACAAAATGCTCTGGCATGGTTTCCTGGTCCATCGGGC
s ponAbe2.chr1                    107369086 270 + 229942017 CTTGCTCCTGAGTATTCAGTGTTACCTGGGGGCAGATGATTCCAGTACTTTCTCAGCCTCCTCAACTTGAACATCTGCATCCTCATCTTCATCATTTTCTGTAAATACAGAAGTGTTCATTCAGATATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGTGCACAGAGACATGAACATCGAGGCATGGGTCACCA---TTCAACTGAAAACTCTCATGTTTTATCTTTAACAAAATGCCCTGGCATGGTTTCCTGATCCATCAGGC
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867088 273 + 229590362 CTTACTCCTGAGTATTCAGTGTTACCTGGGGGCACATGATTCCTGTACTTTTTCAGCCTCCTCAACTTTAACATCTTCATCCTCATCTTCATCATTTTCTGTAAATATAGAAGCGTTCCTTCAGATATTTCCCACTTTACACTCTGCAAGCACAGTCAGCCCAATGTGCACAGAAACATGAACATCTAGGTATGAGTCATCATCGTTCAACTGAAATCTCTCATGTTTTATCTTTAACAAAATGCCCTGGCATGGTTTACAGATCCATCAGGC
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211903789 269 + 227556264 CTTGCTCCTGATTATTCAGGGTTACCTGGGGGCACACGACTCCTGTACTTTCTCAGCCTCCTCAACTTTAACATCTTCATCGTTATCTTCATCATTTTCTGTAAATACAGAAGTGTTCATTCAGATATTTCCCACTTCACACTCTAGAAGCACAGTCAGCCCAATGTGCACAGAGACATGAACATCTAGGCATGGGTCACCA---TTCAACTGAAAGCCCTCAGGTTTTA-CTTTAACAAAATGCCCTGGCATGGTTTCTTGTTCCATCAGGC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404238 269 - 220367699 CTTGCTCCTGATTATTCAGGGTTACCTGGGGGCACATGACTCCTGTACTTTCTCAGCCTCCTCAACTTTAACATCTTCATCGTTATCTTCATCATTTTCTGTAAATACAGAAGTGTTCATTCAGATATTTCCCACTTCACACTCTATAAGCACAGTCAACCCAATGTGCACACAGACATGAACATCTAGGCAAGGGTCACCA---TTCAACTGAAAGCCCTCATGTTTTA-CTTTAACAAAATGCCCTGGCATGATTTCCTGTTCCATCAGGC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1021936 270 -   1280666 CTTGCTCCTGAGTATTCAGTGTTACCTGGGGGCACATGAATCCTGTAATTTCTCAGCCTCCTCAACTTGAACATCTTCATCCTCACCTTTGTCATTTTCTGAAAATAGAGAAGTGTTAGTTCAGGTATTTCCCACTTCACACTCTGCAAGCACAGTCAGCCCAATGAGCACAGAGACATGAACATCTAGGCATGGGTCACCG---TTCAGCTGAAAGCTCTCATGTTTTATTTTTAACAAAATGCCCTGGCGTCGTTTCCTGATCCATCAGGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e nomLeu3.chr24_GL397604_1_random    269695   0 +    297174 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=1911.000000
s hg38.chr1_KI270711v1_random         25410 1 +     42210 A
s ponAbe2.chr1                    107369356 1 + 229942017 A
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867361 1 + 229590362 A
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211904058 1 + 227556264 A
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404507 1 - 220367699 A
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022206 1 -   1280666 A
i chlSab2.chr20_KE148050v1_random C 0 C 0
s tupBel1.scaffold_108284.1-25531      8868 1 +     25531 A
i tupBel1.scaffold_108284.1-25531 N 0 I 2942
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e nomLeu3.chr24_GL397604_1_random    269695 0 +    297174 C
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=76051.000000
s hg38.chr1_KI270711v1_random         25411 64 +     42210 ATGCATTTCCGATCTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCTTTTGCTT
s ponAbe2.chr1                    107369357 64 + 229942017 ATGCATTTCTGATCTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCTTATGCTT
i ponAbe2.chr1                    C 0 C 0
s rheMac3.chr1                     94867362 63 + 229590362 ATGCATTTCTCATCTGGAGGGTCACCATCAAGATGTGGCCAAATA-TGAAAAGACCTTTTGCTC
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211904059 64 + 227556264 ATGCATTTCTGCTCTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCCTTTGTTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404508 64 - 220367699 ATGCATTTCTGCTCTGGAGGGCCACCATCAAGATGTGGCCAAATATTGAAAAGACCCTTTGTTG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022207 63 -   1280666 ATGCATTTCT-ATCTGGAGGGCCACCATCAAGATATGGCCAAATATTGAAAAGACCTTTTGCTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e nomLeu3.chr24_GL397604_1_random    269695  0 +    297174 C
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=1658457.000000
s hg38.chr1_KI270711v1_random         25475  999 +     42210  
s ponAbe2.chr1                    107369421 1000 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    269695  986 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94867425  994 + 229590362  
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211904123 1007 + 227556264  
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201404572 1004 - 220367699  
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1022270 1000 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3639374 18208 +  47448759 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813    0 +    113811 C

a score=328292.000000
s hg38.chr1_KI270711v1_random         26474 179 +     42210 TTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATGG-----TAGAGAAAATTTAAGAGTGGAAAGGGTTGAGTGATCCGCTCAAATATTGCAACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTGAAAGGAATGACTGTGGCCAAGA
s ponAbe2.chr1                    107370421 176 + 229942017 TTCCTGAGCATGAACCACGACTTTATATGGCCTAAGGTGAGACAG-----TAGAGAAAATTTAACAGTGGAAAGGGATGAGTGATCCGCTCTAATGTTGCAACAGAGATTTCTGAGACAATGTCCTCAAGAAGATCTCCAAGC---AGGTCAGCACGTGTTTAAAGGAATATCTGTGGCTAAGT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    270681 179 +    297174 TTCCTGAGAGTGGACTGGGACTTTATATCACCTACGGTTAGATAG-----TAGAGAAAATTTAACGGTGGAAATGGATGAGTGATCAGTTCTAATATTATGACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGAAATGTCTGTGGCCAAGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94868419 179 + 229590362 TTCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGACAG-----TAGAGAAAATTTAACAGTGGAAAGGGATGAGTGGTCAGTTCTAATATTGCAACAGAGATTTCTGAGACAATGTCCGCGAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGGCCAAGA
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211905130 176 + 227556264 TTCCTGAGACTGAACCAGGACTTTATATTGCCTAAGGTGACATAG-----TAGAGAAAATTGAACAGTGGAAAGGGGTGAGTGATCAGTTCAAATATTGCGACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGGAGAAGGTCAGCACATATTTCA---AATGTCTGTGGCCAAGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201405576 176 - 220367699 TTCCTGAGACTGAACCAGGACTTTATATTGCCTAAGGTGAGATAG-----TAGAGAAAATTGAACAGTGGAAAGGGGTGAGTGATCAGTTCCAATATTGCGACAGAGATTTCTGAGACAATGTCCTCAAGGAGACCTCCAAGGAGAAGGTCAGCACATATTTCA---AATGTCTGTGgccaaga
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1023270 146 -   1280666 TGCCTGAGAGTGAACCAGGACTTTATATTGCCTAAGGTGAGATGG-----TAGAGAACATTTAACAGTGGAAAGGGATGAGC---------------------------------GACAATGTCCTCAAGGAGACCTCCAAGCAGAAGGTCAGCACATGTTTAAAGGAATGTCTGTGGCCAAGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3657582 184 +  47448759 TCCCTGAGAGTGAACCAGGGCTTTATACTGCCTATGGTGAGATAGCACGCTAGTATACGTTTAATAACAGAAAGTGATGAGTCATCAGTTCGAATACTGCAATGGAGGTTTAGGTGAGGATGTTCTCAAGGAGCCCTCCAAGCAGAAGGTCACAACATGTTTGGGGAAATGCCTGTGGCCAAGa
i calJac3.chr18                   I 18208 I 374
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=35086.000000
s hg38.chr1_KI270711v1_random         26653 22 +     42210 GAAAGAATAGAAAATGGTTTAC
s ponAbe2.chr1                    107370597 22 + 229942017 GAAAGAATAGAAAATGGTTTAC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    270860 22 +    297174 GAAAGAATCAAAAATGGTTTAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94868598 21 + 229590362 G-AAGAATACAAAATGGTTTAC
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211905306 22 + 227556264 GAAAGAACAAAAAATGGTTTAC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201405752 22 - 220367699 gaaagaacaaaaaatggtTTAC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1023416 22 -   1280666 GAAAGAATAGAAAATGGTTTAC
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3657766 374 +  47448759 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=774560.000000
s hg38.chr1_KI270711v1_random         26675 396 +     42210 AGGCTTCCTCTGTATCAGAGAGGGCTCCTGCAAGATCCTTGATGATGTTCCATTC-ATCTTTCCCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGTTTCAAAAAGA----CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCGGCCACTAGATACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGCGAATTGAAAAGACGAAAGAAGAAAAGAATGACAGGGTCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGAAGACGCAGTCAGTCAGAAGGTGATTCTCACTAAGGGTAAGTggggtggtgatggcacaccattttgagtatactgaatgctgctgggtggttccca
s ponAbe2.chr1                    107370619 396 + 229942017 AGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGATCCTCGATGATGTTCCATTC-GTCTTTCTCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCATTTCAAAAAGA----CATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTTGCGGCCACTAGATACAAAGCCATGTACAGAAATGAGGCCAGATGCAGATGGGGCAAATTGAAAAGACAAAAGAAGAAAAGAATGACAGGGTCAAGAATGCAACATTGATTGAGTGAAAGAATGAGAAGCTGCAGTCAGTCAGGAGGTGATTCTCACTAACGTTTAGTGTggtggcgatcgcacaccattttgagtatactgaatgctgttgggtggttccca
i ponAbe2.chr1                    C 0 I 639
s nomLeu3.chr24_GL397604_1_random    270882 390 +    297174 AGGCTTCCTCTATATCAGAGAGGGCTCCTGTAAGATCCTCGATGATGTTCCATTC-ATCTTTCTCTTCTGTAAACAAAAGTAGATGTCTTCCTAATTCAATTTCAAAATGA----CATCCTTTCAGTTCCTCACTCTGGCCATGGACACCGCCATGTGAAAATACACATAGTGTCTCTTGCAGCGACTAGATACAAAGCCATGTACAGAAATGAGGCCAGGTGCAGATGGGGagaattgaaaagacaaaagaagaaaagaaTG--AGTGTCAAGAAGGCAACACTGATTGAGTGAAAGAATGAGAAGGAG----CAGTCAGGAGGTGACTCTGACTAAGGGTAAGTggggtggtgatggcacaccattttgagtatactgaatgctgctgggtggctccca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94868619 396 + 229590362 AGCCTTCCTCTATATCAGAGAGGCCTCCTGTAAGATCCTCGATGATGTTCCATTA-GTCTTTCTCTTCTGTAAACAAAAGTAGGTGTCTTCCTAATTCCGCTTCAAAAAGA----CATCCTTTCAGTTCCTCACTCTGGCCATGGACAATTCCATGTAAAAATACACACAGTGCATCTTGCAGCGACTAGATACAAAGCCATGTACAGAAATGAGGCTAGGCGCAGACGGGGTGAATTGAAAAGATGAAACAAGAAAATAATGACAGGGTCGAGAAGGCAACATTGATTGAGTGAAAGAATGAGAAGCCGCAGTCAGTCAGGAGCTGATTCTCACTAAGGGTAAGTggggtggtgaaggcacaccattttgagtatactgaatgctgctgggtggttccca
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211905328 398 + 227556264 AGGCTTCGTCTATATCAGAGAGGGCTCCTGTAAGATCCTCGACAATGTTCCATTC-ATCTTTCCCTTCTGTAAACAAAAGTAGGTGCCTTCCTTATTCAGTTTCAAAAAGACATTCATCCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTCGCAGTCTCTAGATGCAAAGCCATGGACAGAAATGAGGCCCGGTGCAGAGAGGACCAGTCGAAAAGATGAAAGAAGAAAAGAATGACAGGCTCCAGAAGTC--TTGTGATTGACCGAAAGGATGAGAAGCCGCAGTCAGTCAGGAGGTGATTCTGACTAAGGGTAAGTGGGTtggtgatggcgcaccattttgagtacactgaatgctgttgggtggttccca
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201405774 399 - 220367699 AGGCTTTGTCTATACCAGAGAGTGTTCCTGTAAGATCCTCGACGATGTTCCATTCAATCTTTCCCTTCTGTAAACAAAAGTAGGTGTCTTCCTTATTCACTTTCAAAAAGACATTCATTCTTTCAGTTCCTCACTCTGGCCATGGACATTTCCATGTGAAAATACACATAGTGCATCTCGCAGTCTCTAGATGCAAAGCCATGGACAGAAATGAGGCCCGGTGCAGAGGGGACCAGttgaaaagatgaaagaagaaaagaatgacagGCTCCAGAAGTC--TTGTGATTGACCGAAAGGATGAGAAGCTGCAGTCAGTCAGGAGGTGATTCTGACTAAGGGTAAGTGGGGTGGTGATGGCGCACCATTTTGAGTACACTGAATGCTGTTGGGTGGTTCCCA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1023438 395 -   1280666 AGGCTTCCTCTGTATCAGAGAGGGCTCCTGTAAGATCCTTGATGATGTTCCATTC-ATCTTTCTCTTCTGTAAACAAAAGTAGGTGTTTTCCTAATTCCATTTCAAAAAGA----CATCCTTTCAGTTCCTCACCCTGGCCACAGACATTTCCATGTGAAAATACGCATAGTGCATCTTGCAGCGA-TAGATACAAAGCCATGTACAGAAATGAGGCCGGGTGCAGATGTGGCGAGTTGAAAAGACGAAAGAAGAAAAGAATGACAGGGCCGAGAAGGCAACATTGATTGAGTGGAAGAATGAGACGCCGCAGCCAGTCAGGAGGTGATTCTGACTAAGGGTAAGTggggtggtgatggcacaccattttgagtatactgaatgctgctgggtggttcgca
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3658140 368 +  47448759 AGGCTTCCTCTGAATCAGAGAGAGCTCCTGTAACATCCTCTATGATGTTCCACTC-ATTTATGTCTTCTGTAAACAAAAGTCTGTGTCTTCCTAAGTCAGTTTCAAGGGGA----TGTCCTTTCAGCTCCTCACTTTGGTCATGGACATTTCTATGTGAAAATTCACATACTGAATCTTGCAGTGACTGGAAACAGAGCTGTACACAGACAAGTGGCCAGGGGCAGATGGAGTGAATTGGAAAGATGAAAGAAGAAAGAAATGGCAGG-TCAAGAAGGCAATATTGATTGAATGAA-----GAGTTGCTGCGGTCAGCGAGGAGGTGAAT----CTAAGAGTACATGGGATA------------------gagtgtactaaacgctgctgggtggttcact
i calJac3.chr18                   I 374 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=159302.000000
s hg38.chr1_KI270711v1_random         27071 118 +     42210 ctcctttggtgaattttctgtcatgcaaatttcacatcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TAAGAAACAACTGC------------------AACACATAACTTATTATTATCCTTGTTCTC--
s nomLeu3.chr24_GL397604_1_random    271272 118 +    297174 ctcctttggttaattttgtgttatgcaaatttcacctcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAATTTATTACTATCCTTGTTCTC--
i nomLeu3.chr24_GL397604_1_random C 0 I 4
s rheMac3.chr1                     94869015 118 + 229590362 ctcctttggttaattttgtgttatgcaaatttcacctcaaCAATTACTTGTTTG-AGAAAAAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTACTATTATCCTTGTTCTC--
i rheMac3.chr1                    C 0 I 4
s macFas5.chr1                    211905726 118 + 227556264 ctcctttagttaattttgtgttatgcaaatttcacctcaaCAATTACTTCTTTG-AAAAAGAGAAATCATGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCTC--
i macFas5.chr1                    C 0 I 4
s papAnu2.chr1                    201406173 118 - 220367699 CTCCTTTAGTTAATTTTGTGTTATGCAAATTTCACCTCAACAATTACttctttc-aaaaagagaaatcatGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCTC--
i papAnu2.chr1                    C 0 I 4
s chlSab2.chr20_KE148050v1_random   1023833 118 -   1280666 ctcctttgattaatttcgtgttatgtaaatttcacctcaaCAATTACTTGTTTG-AAAAAGAGAAAACAAGGCTC---------------TGAGAAACAACTGC------------------AACCCATAACTTATTATTATCCTTGTTCTC--
i chlSab2.chr20_KE148050v1_random C 0 I 4
s calJac3.chr18                     3658508 153 +  47448759 ttattttaattaatttta-gatatgcaaattttgactcaaCATTTGGTTGTTTATAAAAAGTGTAATCAAAGCTCAAGGNNNNNNNNNNATGAGACATGCCTGCCCCAGTGGACGGCAGTGGAAGTCGTAATGTGCTAAGATTACTGTTCTGTT
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e ponAbe2.chr1                    107371015 639 + 229942017 I
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=944648.000000
s hg38.chr1_KI270711v1_random         27189 501 +     42210 TGATAAATATTTGTGTGTCATGAGCCTGCCATGGCAATTTCTGCCCTTCCCCTGGCCCAGCTTCGTTGTTACTTCTCCCCGCCGAGCTGCTGTACTTCAGAGATCTACACACCTACCCGCCTGCCTCCCCCCACGGGGTCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCTCCTTGAA--CTGTCG----CTCATTCCTCAGCATAAATTTTATGAGGTCTTTACACTCTTCATACTCTGAGAAAAGACAGACACGTCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACAAAACTGTCCCCAGTACCAGGCTCTAGGCAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGACTTTCTGGCATCTTATCCTCCAAAATTTAAAGACGAA-GAAAGAGAAACTCAAGG-CACATCAAGGAAGTTGACAAGATGATTCAACCTCAACGA
s ponAbe2.chr1                    107371654 497 + 229942017 TGATAAATATTTCTGTGTCATGAGCCTGCCATGGCAATTTCTGCTCTTCCCGTGGCCCATCTTAGTTCTTACTTCACCCCACCGAACTGCCATACTTCAGAGATTTACACACCTACCCACCTGCCTCCCCC-ATTGGGTCCCCTCACTT-AGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCT---TGAA--CTGCAG----CTCATCTCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATATTCTGAGAAAAGACAGACACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGCCAC-GTCCATCCCAAGGACAAAACTGTCCCCAGTACCAGGCTCTAGGCAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGACTTTCTGGCATCTGATCCTTCAAAATTTAGAGACGAG-GAAAGAGAAACTCAAGGGCACTTCAAGGAAGTTGACAAGATGATTCAACCACAAAGA
i ponAbe2.chr1                    I 639 C 0
s nomLeu3.chr24_GL397604_1_random    271394 501 +    297174 TGATAAATATTTGTGTGTCAAGAGCCTACCATGGCAATGCCCGCCTTTCCCCTGGCCCAGCTTAGCTCTTACTTCTCCCCACTGAGCTGCTGTACTTCAGAGATTTACACATCTG-TGACCTGACTGCCCCCACAGGGCCCCCTCACCTGAGCTCCTCAGCTTGCCTGAGCTGCTCTGCAAGCTTCTCCTCCTTGAA--CTGCAG----CTCATTCCTCAGCATAGATTTTATGAGGTCTTGGCACTCTTCACACTCTGAGAAAAGACAGACATGCCTGCCTCAGTGGAAAGCTGGACGTGCTGCTCTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACAAAATTGTCCCCAGTACCAGGCTCTAGGCAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGACTTTCTGGCATCTGATCCTCCAAAATTTAGGAACGAA-GAAAGAGAAACTCAGGGGCACATCAAGGAAGTTTACAAGATGATTCAACTACAATGA
i nomLeu3.chr24_GL397604_1_random I 4 C 0
s rheMac3.chr1                     94869137 502 + 229590362 GGATAAATATTTGTGTGTCGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCCTGGCCCAGCTTAGCTCTTACTTTTCCCCGCTGAGCTGCTGTATTTCAGAGATTTACACACCTGCCCACCTGCCTACCCCCACGGGATCCCCTCACCTGAGCTCCTTAGCCTGCCTGAGCTGCTCTGCAACCTTCTCCTCCTTGAA--CTGAAG----CTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGACATGCCTGCTTCAGTGTAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGTCAG-GTCCATCCCAAGGACAAAACTGTCCCCAGTACCAGGCTCTAGGAAGGGATTTCCACATCTTTACTCTTCAGTCTCCTGACTTTCTAGCATCTGTTTCTCCAAAATTTAGAGACGAA-GAAAGAGAAACTCAAGAGCACATCAAGGAAGTTGACCAGATGATTCAACCACAATGA
i rheMac3.chr1                    I 4 C 0
s macFas5.chr1                    211905848 499 + 227556264 TCATAAATCTTTGTGTGTTGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCCAGACCCAGCTTAGCTCTTACTTCACCTCGCCGAGCGGCTGTACTTCAGAGATTTACACACCTGCCCACCTGCCTG----CATAGGGCCCCCTCACCTGAGCTCTTCAGCTTGCCCGAGCTGCTCTGCAAGCTTCTCCTCCTTCAA--CTGAAG----CTCATCCCTTAGCATAGATTTTAGGAGGTCTTTGCACTCTTCATAGTCTGAGAAAAGACAGACACACCGGCCTCAGTGAAAAGCTGGACACACAGCGGTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCCATCCCAAGGACACAACTGACCCCAGTACCAGGCTCCAGGCAGGGATTTCCACCACTTTACTCTTCAGTCTCCCGACTTTCTGGCATCCTATCCTCCAAAGTTTAGAGACAAACAAAACCGAAACTGAAGGGCACATCAAGGAAGTTGACAAGATGATTCAATCACAATAA
i macFas5.chr1                    I 4 C 0
s papAnu2.chr1                    201406295 498 - 220367699 TCATAAATCTTTGTGTGTTGTGAGCCTGCCATGGCAATTCCTGCCCTTCCCCAGACCCAGCTTAGCTCTTACTTCACCCCGCCAAGCGGCTGTACTTCAGAGATTTACACACCTGTCCACCTGCCTG----CATAGGGCCCCCTCACCTGAGCTCTTCAGCTTGCCCGAGCTGCTCTGCAAGCTTCTCCTCCTTCAA--CTGAAG----CTCATCCCTCAGCATAGATTTTAGGAGGTCTTTGCACTCTTCATAGTCTGAGAAAAGACAGACACACCGGCCTCAGTGAAAAGCTGGACACACAGCGGTGGTCACTGCCTACAGGGCAGGAGCCAG-GTCTATCCCAAGGACATAACTGACCCCAGTACCAGGCTCTAGGCAGGGATTTCCACCTCTTTACTCTTCAGTCTCCCGACTTTCTGGCACCTCATCCTCCAAAATTTAGAGACAAA-CAAACCGAAACTCAAGGGCACATCAAGGAAGTTGACAAGATGATTCAATCACAATGA
i papAnu2.chr1                    I 4 C 0
s chlSab2.chr20_KE148050v1_random   1023955 501 -   1280666 TGATAAATATTTGTGTGTCATGAGCCTGCCATGGCAATTCCTTCCCTTCCCT-GACCCAGCTTAGCTCTTACTTCTCCCCGCTGAGCTGCTGTACATCAGAGATTTATACACCTGCCCACCTGCCTGCCCCTACGGGGCCCCCTCACCTGAGCTCCTCAGCTTGCTTGAGCTGCTCTGCAAGCTTCTCCGCCTTGAA--CTGCAG----CTCATCCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATACTCTGAGAAAAGACAGAGACGCCTGCCTCAGTGGAAGGCTGGACATGCTGCTGTGGTCACTGCCTACAGGGCAGGAGGCAG-GTCCATCCCAAGGACAAAACTGTCCCCACTACCAGGCTCTAGGCAGGGATTTCCACATCTTTACTCTTCAGTCTCCCGACTTTCTGGCATCTGATCTTCCAAAATTTAGAGACAAA-GAAAGAGAAACTCAAGGGCACATCAAGGAAATTGACAAGATGATTCAACCACAACGA
i chlSab2.chr20_KE148050v1_random I 4 C 0
s calJac3.chr18                     3658661 500 +  47448759 TTATGAGTGCTGCTCTGAAATGTGCCTGCCATGTAAATGTCTGTCCTGGTCCTGGCCCAGCTTAGCTGCTGGTTCTCCCAGTTGATGTGCTGCACTTCAGAGATTCACACCTTTGCCC-CCCACCAGTCCCCACAGCGTCTGCTCACCTGAGCTCCTCAATTAATTTGAATTCCTC-ATACATTGTTTCTTCTCCAATTTTGTAGATGTCTCTCTCCAGAGACTGGATATTAAGG-----TGGTATTCATCGAAGTCTGAGAAAAGAAAGTCATGCCTGCCTCAGTGGAAGGCTGGACAGGCTGTTGTGGTCACTGCCTACATGGCAGGTGGCAGCATTTATCCCAA--ACAAAGGCATCTCCACTATCAGGCTTCAGTGAGGGATTTCCTCATTTTTAGTTATAAACCTCCCAACTCACTGGCATCTGATACTCTCCAACTTAGAGATGGG-GAAAAAGAAACTCATTGGCACATCAAGTAACTTGACAGGATGATTCACCTTGGATGA
i calJac3.chr18                   C 0 I 307
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=8022.000000
s hg38.chr1_KI270711v1_random         27690 4 +     42210 AGTG
s ponAbe2.chr1                    107372151 4 + 229942017 AGTG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271895 4 +    297174 AGTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94869639 4 + 229590362 AGTG
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906347 4 + 227556264 AGTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201406793 4 - 220367699 AGTG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024456 4 -   1280666 AGTG
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e calJac3.chr18                     3659161 307 +  47448759 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=419822.000000
s hg38.chr1_KI270711v1_random         27694 218 +     42210 GACTCAGAACTCACAGCCCCTGAGGTCTGACTCTGAATGCGGGGCCACTTTCCCAAGCCTGGCAGCCTCTCCTCTGAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGTATTTCAAGGACAAATATGTCAAGGACTTTAAAA-CATTTCATTTTTAAATCA
s ponAbe2.chr1                    107372155 217 + 229942017 GAGTCAGAATTCACAGCCCCTGAGGTCTGACTCTGAATGTGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCGGGAAGA-CCCCTAGGACTATGAGACTGATGGTTTCCTTTTTACTGGGTATTTCAAGGACAAAT--GTCAAAGACTTTAAAAACATTTGATTTTTAAATCA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    271899 220 +    297174 GAGTCAGAATTCATAGCCCCAGAGATTTGACTCTGAATGCGGGGCCACTTTCCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTACAGTCAGGAAGGCCCCCTAGTACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAATATGTCAAAGATTTTTAAAATCTTTGATTTTTAAACCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94869643 219 + 229590362 GAGTCAGAATTCACAGCCCCTGAGGTCTGACTCTGAATGTGGAGCCACTTGTCCAAGCCTTGCAGCCTCTCCTCTAAAACACTGCACTGGGGCATGAAGTAGTGATTTCTTGTATGGTCGGAAAGG-CCCCTAGGACTATGGGACAGATGGTTTCCCTTTTACCGGGAATTTCAAAGAAAAATACGTCAAAGATTTTTAAAATATTTGATTTTTAAATCA
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906351 215 + 227556264 GAGTCAGAATTCACAGCCCCTGAGGTGTGACTCTGCATGCCGGGCCACTTCCCCAAGCCTTGCAGCCTCTCCTCCAAAACACTGCACTGGGGCATGAAGTAGAGATTTCTTGGACAGTTGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCGTT----CGGGAATTTCAAGGACAAATCTGTCAAAGATCTTAAAAATCTTTGATTTTTAAATCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201406797 215 - 220367699 GAGTCAGAATTCACAGCCCCTGAGGTGTGACTCTGCATGCGGGGCCACTTCCCCAAGCCTTGCAGCCTCTCCTGCAAAACACTGCACTGGGGCATGAAGTAGAGATTTCTTGGACAGTTGGGAAGA-CCCCTAGGACTATGGGACTGATGGTTTCCGTT----TGGGAATTTCAAGGACAAATCTGTCAAAGATCttaaaaatctttgatttttaaatca
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024460 218 -   1280666 GAGTCAGAATTCACAGCCCCTGAGGTCTGAGTCTGAATGTGGGGCTGCTTTTCCAAGCCTT-CAGCCTCTCCTCTAAAACACTGCACTGGGCCATGAAGCAGTGATTTCTTGTACAGTCGGGAAGG-CCCCTAGGACTATGGGACTGATGGTTTCCCTTTTACTGGGAATTTCAAGGACAAGTATGTCAAAGATTTTTAAAATCTTTGATTTCTAAATCA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3659468 200 +  47448759 GAGTCAGAATTCATAGCCCCCAAAGTCTGGCTCTGAATCCTGGGACAGTTTTTCAAGGTTTGCCACCTCTCCTGTCAAACACTCTACTGGGGCATGAAGTAGTGATATCCTGCACAGTAGGAAAGA-CCCTTAGGTGTATGGGACTCATGGATTCCCTGGTACTGGGAATTTTTAGCACAAATATGTCAAAGATTCTAAGT-------------------
i calJac3.chr18                   I 307 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197954196 9306 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=3276.000000
s hg38.chr1_KI270711v1_random         27912 1 +     42210 T
s ponAbe2.chr1                    107372372 1 + 229942017 T
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272119 1 +    297174 T
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94869862 1 + 229590362 T
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906566 1 + 227556264 T
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201407012 1 - 220367699 t
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024678 1 -   1280666 T
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197963502 1 - 215897965 T
i nasLar1.chr1                    I 9306 I 406
s calJac3.chr18                     3659668 1 +  47448759 T
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=140780.000000
s hg38.chr1_KI270711v1_random         27913 90 +     42210 ATATTCAGATATGGTTTTAAGAATCATATCTGAAGCATAAAGTGTGAGACAGAAGACAATAAGGCCATGAAGGAAATATGCCCAAATACT
s ponAbe2.chr1                    107372373 90 + 229942017 ATATTCAGATATGATTTTAAGAATCATATCTGAAGCATAAAGTGTGAGACATAAGACCATAAGGCCATGAAGAAAATATGCCCAAATGCT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272120 90 +    297174 ATCTTTAGGTATGATTTTGAGAACCATATCTGAAGCATAAAGTATGAGGCATAAGACCATAAGGCCATGAAGGGAATATGCCCAAATGCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94869863 61 + 229590362 ---------------------AATCGTATCTGAAGCATAAAGTATGAGACAT--------AAGGCCATGAGGGAAATATGCCCAAATACT
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906567 90 + 227556264 ATCTGCAGATATGATTTTAACAATCATAACAGAAACATAAAGTATGAGACATAAGACCACAAGACCATGAAGGAAATATGCCCTAATACT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201407013 90 - 220367699 atcTGCAGATATGATTTTAACAATCATAACAGAAACATAAAGTATGAGACATAAGACCACAAGACTATCAAGGAAATATGCCCAAATACT
i papAnu2.chr1                    C 0 I 2885
s chlSab2.chr20_KE148050v1_random   1024679 90 -   1280666 ATCTTCAGATATGATTTTAAGAATCATATCTGAAACATAAAGTATGAGACATAAGACCATAAGGCCATGAAGGAAATGTGCCCAAATACT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3659669 71 +  47448759 ATATCTGAATATAATT------------------GCATAAA-TATGAGGCTTAAGGCCCTGAGGTCATGATAGAAATATGACCAAATACT
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197963503 406 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=-6266.000000
s hg38.chr1_KI270711v1_random         28003 66 +     42210 TTATTAGTATGACAGGCAGCATCAAGATTTAGATTAGTTGTGTTAATTTAGAAACAGCATAAGATT
s ponAbe2.chr1                    107372463  5 + 229942017 ---------------------------------------------------------AATAA----
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272210  5 +    297174 ---------------------------------------------------------AATAA----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94869924  5 + 229590362 ---------------------------------------------------------AATAA----
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906657  5 + 227556264 ---------------------------------------------------------AACAA----
i macFas5.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024769  5 -   1280666 ---------------------------------------------------------AACAA----
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3659740  5 +  47448759 ---------------------------------------------------------AATAA----
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197963503 406 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e papAnu2.chr1                    201407103 2885 - 220367699 I
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=167037.000000
s hg38.chr1_KI270711v1_random         28069 76 +     42210 AGTTTGTGTTAATTTAGAAACATCAGAATGAAGAACTAATAGATagtgtttacactgtgccaattaatgttcaagg
s ponAbe2.chr1                    107372468 76 + 229942017 AGTTTGTGTTAATTTAGAAACAGCAGAATGAAGAACTAATAGATagtgtttactctgtgccaataaatattctagg
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272215 76 +    297174 AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATTGATACTgtttactctgtgccaataaatgttctagg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94869929 76 + 229590362 AGCTTGTGTTAATTTAGAAACAGTAGaataaagaactaatagatagtgtttactctgtgccaataaatgttctagg
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906662 76 + 227556264 AGTTTGTGTTAATTTACAAACAGTAGAATGAGGAACTAATAGATagtgtttactctgtgccaataaatgttccagg
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201409988 76 - 220367699 AGTTTGTGTTAATTTACAAACAGTAGAATGAGGAACTAATAGATAGTGTTTACTCTGTGCCAATAAATGTTCCAGG
i papAnu2.chr1                    I 2885 C 0
s chlSab2.chr20_KE148050v1_random   1024774 76 -   1280666 AGTTTGTGTTAATTTAGAAACAGTAGAATGAAGAACTAATAGATagtgtttactctgtgccagtaaatgttctagg
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3659745 76 +  47448759 AGTTTGAATTAAGTGAGAAATAGTAGAATCAAGAACTAATAGATagtgtttgctctgtgccaagaattgttctagc
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197963503 406 - 215897965 I
e tupBel1.scaffold_108284.1-25531      8869 2942 +     25531 I
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=-1132.000000
s hg38.chr1_KI270711v1_random         28145 1 +     42210 -a
s ponAbe2.chr1                    107372544 1 + 229942017 -a
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272291 1 +    297174 -a
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870005 1 + 229590362 -a
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906738 1 + 227556264 -a
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410064 1 - 220367699 -A
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024850 1 -   1280666 -a
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3659821 1 +  47448759 -a
i calJac3.chr18                   C 0 C 0
s tupBel1.scaffold_108284.1-25531     11811 1 +     25531 T-
i tupBel1.scaffold_108284.1-25531 I 2942 N 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197963503 406 - 215897965 I
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=475845.000000
s hg38.chr1_KI270711v1_random         28146 235 +     42210 gattgacaggaaatacctcatgtaattcattgcagcaatttacagaggtaggtattattgtagtaccctctgaacagatgaggaa----------actgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCTGAGGGTCCCTGCTTTGCACACTGCACTGCTGCTTCCACACATTCTCGGGTGTGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCACCAGGAATCAG
s ponAbe2.chr1                    107372545 235 + 229942017 gattgacaggaaatagctcatgtaattcattgcagcaatttacagaggtaggtattattgtagcaccctctgaacagatgaggaa----------actcagggacagacaagacaagcaacttgGATGAAGCCCAGGAGACAGGCCCAGGGTCCCTGCTCTGCACACTGCACTGCTGCTTCCACACATTCTCAGGTGCTATCTTTCTTCCTCTTTAGGAGGAAGAGTCTGTGCCCCAGGAAGCAG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272292 245 +    297174 gattggcaagaaatagctcatgtaatttatttcagaaatttacagaggtaggtattattgtcgtaccctgtgaacagatgaggaaacaggaacagactgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCCCAGGGTCCCTGCTCTGCACACTGTACTTCTACTTCCACACATTCTCAGGTGCCATCTTTCTTCCTCTTTAGGAACAACAGCCTGTGCCCCAGGAAAAAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870006 228 + 229590362 aattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagtattgtatgaacagatgaggaa----------actgagggacagacaagacaagcaacttgGATGGAGCCCAGGAGACAGGCCCAGGGTCCCTGCTCTGCACACTGTACTGCTACTTCCACACATTCTTGGGTGTGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCCC-------TAG
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906739 228 + 227556264 gattgacaagaaataactcatgtaactcattgcagcaatttacagaggtaggtattactgtagcaccctatgaacagatgaggaa----------actgagggacagacaggacaagcaagttgcatgcagcccaggagacagactcagggttcCTGCTCTGCACACTGCACTACTACTTCCACACATCCTGGGGTGCGATCTTTC-------TGAGGAACAAAAGCCTGTGCCCGAGGAAGCAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410065 235 - 220367699 GATTGACAAGAAATAACTCATGTAACTCATTGCAGCAATTTACAGAGGTAGGTATTACTGTAGCACCCTatgaacagatgaggaa----------actgagggacagaCAGGACAAGCAAGTTGCATGCAGCCCAGGAGACAGACTCAGGGTTCCTGCTCTGCACACTGCACTACTACTTTCACACATCCTTGGGTGCGATCTTTCTTCCGCTTTAGGAACAAAAGCCTGTGCCCGAGGAAGCAG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1024851 235 -   1280666 gattgacaagaaatagctcatgtaattcactgcagcaatttacagaggtaggtattattgtagcaccctatgaacagatgaggaa----------actgagggacagacaagacaagcaacttgGATGGAACCCAGGATACAGGCCCAGGGTCCCTGCTCTGCCCACTGCACTGCTACTTCCACACATTGTCGGGTGTGATCTTTCTTCCTCTTTAGGAACAAGAGCCTGTGCACCAGGAAGCAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3659822 234 +  47448759 gatttagaagaaacaggtcaggtaattcattgcagcaatttacagagctaggtattattatagtacccaatgaacaaatgaggaa----------actgaggcacagagaagataggccactGGGATGGAGACCAGGAGACTGGTCTGGGCTCCCTGCTCTGCACACAGCACTGCTACCTCCCCAATGTCTTACGTGCTATCTTTCTTCCTCTTCAGAAA-AAGAGCCTGTGCCCCAGGATGCAG
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197963503 406 - 215897965 I
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=3600.000000
s hg38.chr1_KI270711v1_random         28381 1 +     42210 G
s ponAbe2.chr1                    107372780 1 + 229942017 G
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272537 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870234 1 + 229590362 G
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906967 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410300 1 - 220367699 G
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025086 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197963909 1 - 215897965 G
i nasLar1.chr1                    I 406 N 0
s calJac3.chr18                     3660056 1 +  47448759 G
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e panTro4.chr1_GL389150_random        95813 0 +    113811 C

a score=33653.000000
s hg38.chr1_KI270711v1_random         28382 18 +     42210 ACTTCACTCTCACCAAGG
s ponAbe2.chr1                    107372781 18 + 229942017 ACTTCCCTCTCACCAAGG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272538 18 +    297174 ACTTCCCTCTCAACAGAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870235 18 + 229590362 ACTTCCCTCTTACCAGAG
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906968 18 + 227556264 ACTTCCCTCTCACCAGGG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410301 18 - 220367699 ACTTCCCCCTCACCAGGG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025087 17 -   1280666 ACTT-CCTCTCACCAGGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3660057 18 +  47448759 ACTTCCCTCTCCCCAGAT
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=425055.000000
s hg38.chr1_KI270711v1_random         28400 333 +     42210 TACTCTCTGC-TTTTTATTT-------------TTAtttttgtttatctttttgtttgtttgttttttgacgagtcttgccctgtcaccca-tgctggagtgcaacagtgcaatcttggctcactgcaacatctgcctgctgggttcaaa------------------------------ggattcttctgcctcagcctcccgattagtggtgattacagttgcccgccacgacgcccatctactttttgtatttttagtggagatggggtttctccatgttgcccaggctagtctcaaactcctcaactcgtgctctgcccgcctcagcctcccaaagtgctgagattacaggagtgagccacgttgcacggccCC
s ponAbe2.chr1                    107372799 330 + 229942017 TACTCTCTGC-TTTttattt-------------ttatttatcattattattattattattT---TTTTGATgagtcttgccctgtcgccca-tgcaggagtgcaataccgcaatcttggctcactgcaacctctgcctcctgggttcaaa------------------------------ggattctcctgcctcagcctcccgagtaggggggattacaggcacccaccaccacgcccatctactttttgtatttttagtggagatggggtttgtccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccacctcagcctcccaaagtgctggggttacaggagtgagccaccgtgcgcggccCC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272556 317 +    297174 TACTCTCTACttttttaaat-------------ttatttat--------------ttattta--ttttgacgagtcttgccttgtcgccca-ggctcaagtgcaatggtgtgatcttggctcattgcaacctctgcctcctaggttcaaa------------------------------ggattctcctgcctcagcctcccgagtagtggggattacaggcg-ccgccaccacgcacagctaatttttgaaatttttgtagagacggggtttctccatcttgcccaggctagtctcaaactcctgaccttgtgatctgcccaagtcagcctcccaaagtgctgggattacaggagtgagccacagtgcacggccCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870253 322 + 229590362 TACTCTCTGC-TGTTTAT---------------TTTTTTATTtttgtttgtttgtttgtttat-ttTTGACCagtcttgccctgtcaccca-ggctagaatgtaatggcacaatcttggctcactgcaacctctgcctcctgggttcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnn--------------------------------------nnggcacctgccaccatgcccagctaatttttgtatttttagtagagatggggtttctccatgttgcccaggctgatctcaaactcctgacctcgtgatctgcccacttcggccttccaaagtgctgggattacaagagtgagcaactgtgcacggccCC
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211906986 345 + 227556264 TACTCTCTGC-tttttcttttcttttaattttctttctttttttttttttttttttttttttt-ttttgacgagtcttgccctgtcaccca-ggctggagtgcaatggcgtgatcttggctcactgcaacctctgtctcctgggttcaaa------------------------------ggattctcctgcctcagcctcccgagtagctagaattacaggtgcccaccaccatgcccatgtaatttttctaattttagtagagacggggtctctccacattgcccaggatggaatcaaactcctgacctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggactgagccaccttgcacggccCC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410319 340 - 220367699 TActctctgc-tttttgttttcttttct-----ttaattttctttcttttttttttttttttt-ttttgacgagtcttgccctgtcaccca-ggctggagtgcaatggcgtgatcttggctcactgcaacctctgtctcctgggttcgaa------------------------------ggattctcctgcctcagcctcccgagtagctagaattacaggtgcccaccaccatgcccatgtaatttttgtaattttagtagagatggggtttctgcatgttgcccaggctgatctcaaactcctgacctcgtgatccacccgcctcagcctcccaaagtgctgggatcacaggattGAGCCACCTTGCACGGCCCT
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025104 315 -   1280666 TACTCTCTGC-tttt-------------------------------tttttttttttttccct-ccttgacaagtcttcctctgtcgcccagggctggagtgcaatggcgcgatcttggctcactgcaacctctgcctcctgggttccaa------------------------------aggttctcctgcctcagactcccgagtagctgggattacaggtgcctcctaccatgcccagctaatttttgtattttcagtggagacgcagtttctccatgttgcccaggctggtctcaaactcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggggtgagccactgtgcatggccCC
i chlSab2.chr20_KE148050v1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e calJac3.chr18                     3660075   0 +  47448759 C
e panTro4.chr1_GL389150_random        95813   0 +    113811 C

a score=143519.000000
s hg38.chr1_KI270711v1_random         28733 70 +     42210 TACTCCCTGCTCTTGATGGTGTCACTTATAGATAGCACAGGTTCTATTAGGAGCAGACTCCTCTTGAAGT
s ponAbe2.chr1                    107373129 70 + 229942017 GACTCCCTGATCTTGATGCTGTCACTTATAGATAGCACAGGTTCTATTAGAAGCAGACTCCTCTTGAAGC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272873 70 +    297174 TACTCCCTGCACTTGATGCTGTTACTTATATATACCACATGTTCTATTAGGAGCAGACTGCTCTTGAAGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870575 70 + 229590362 TACTCCCTCCTCTTGATTCTGTCACTTATAGATACCACAGGTTCTATTAGGAGCAGAGTCTTCTTGAAGC
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211907331 70 + 227556264 TACTCCCTGCTCTTGATGCTGTCGGTTATAGATACCACAGGTTCTATTAGAAGCAGACTCCTCTTGAGGC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410659 70 - 220367699 TACTCCCTGCTCTTGATGCTGTCAGTTATAGATACCACAGGTTCTATTAGAAGCAGACTCCTCTTGAGTC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025419 70 -   1280666 TACTCCCTGCTCTTGATGCTGTCACTTATAGATACCACAGGTTCTATTAGGAGCAGACACCTCTTGAAGC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3660075 70 +  47448759 TACTCCCTGCTCTTCATGCTGTCACTTATGGATGCCACTATTACTATTAGGAGCAGTCTCCTCTTTAAGC
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e panTro4.chr1_GL389150_random        95813  0 +    113811 C

a score=3121638.000000
s hg38.chr1_KI270711v1_random         28803 1196 +     42210  
s panTro4.chr1_GL389150_random        95813 1193 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107373199 1196 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    272943 1199 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94870645 1184 + 229590362  
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211907401 1193 + 227556264  
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201410729 1190 - 220367699  
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1025489 1200 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3660145 1108 +  47448759  
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I

a score=4500.000000
s hg38.chr1_KI270711v1_random         29999 1 +     42210 G
s panTro4.chr1_GL389150_random        97006 1 +    113811 G
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374395 1 + 229942017 G
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274142 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94871829 1 + 229590362 G
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211908594 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201411919 1 - 220367699 G
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026689 1 -   1280666 G
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    110518357 1 - 215897965 G
i nasLar1.chr1                    N 0 N 0
s calJac3.chr18                     3661253 1 +  47448759 G
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I

a score=58804.000000
s hg38.chr1_KI270711v1_random         30000 21 +     42210 GCAGAAACAGTTTCCCAACAG
s panTro4.chr1_GL389150_random        97007 21 +    113811 GCAGAAACAGTTTCCCAACAG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374396 21 + 229942017 GCAGAAACAGTTTCCCAACAG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274143 21 +    297174 GCAGAAACAGTTTCCCAACAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94871830 20 + 229590362 GCAGAAACA-TTTCCCAACAG
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211908595 21 + 227556264 GCAGAAACAGTTTCCCAACAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201411920 21 - 220367699 GCAGAAACAGTTTCCCAACAG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026690 21 -   1280666 GCAGAAACAGTTTCCCAACAG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3661254 21 +  47448759 GTGGAGATAGTTTTTCAAGAA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I

a score=105143.000000
s hg38.chr1_KI270711v1_random         30021 50 +     42210 GTTGTATTTTCTTAATGGTAGTCATGAAGTCACCCCACCTGCTCTCAGTT
s panTro4.chr1_GL389150_random        97028 50 +    113811 GTTATATTTTCTTAATGGTAGTCATGAAGTCACCCCACCTGCTCGCAGTT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374417 50 + 229942017 GTTATATTTTCTTAATGGTAGTCATGAAGTCACCCCACCTACTCTAAGTT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274164 50 +    297174 GTTATATTTTCTTAATGGTAGTCATGAAGTCACTCTACCTGCTCTAAGTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908616 50 + 227556264 GTTATATTTTCTTAATGGCAGTCATGAAGTCACCCCACCTGCTCCCAGTT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201411941 49 - 220367699 GTTATATTTTCTT-ATGGCAGTCATGAAGTCACCCCACCTGCTCCCAGTT
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026711 50 -   1280666 GTTATATTTTCTTAATGGTAGTCATGAAGTCACCCCACCTGCTGTAAGTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3661275 49 +  47448759 GTTACATTTTCTTTGTGGTAGTCAGGAAGTCACTGCACCTTCTCT-AGTT
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850  0 + 229590362 C

a score=24240.000000
s hg38.chr1_KI270711v1_random         30071 8 +     42210 AAAACAGA
s panTro4.chr1_GL389150_random        97078 8 +    113811 AAAACAGA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374467 8 + 229942017 AAAACAGA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274214 8 +    297174 AAAACAGA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908666 8 + 227556264 AAAACAGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201411990 8 - 220367699 AAAACAGA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026761 8 -   1280666 AAAACAGA
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197964660 8 - 215897965 AAAACCGA
i nasLar1.chr1                    N 0 I 5
s calJac3.chr18                     3661324 8 +  47448759 AAAGCAGA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850 0 + 229590362 C

a score=7285.000000
s hg38.chr1_KI270711v1_random         30079 5 +     42210 GCTTA
s panTro4.chr1_GL389150_random        97086 5 +    113811 GCTTA
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374475 5 + 229942017 TCTTA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274222 5 +    297174 TCTTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908674 5 + 227556264 TCTTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201411998 5 - 220367699 TCTTA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026769 5 -   1280666 ACCTT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3661332 5 +  47448759 TCTTA
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197964668 5 - 215897965 I
e rheMac3.chr1                     94871850 0 + 229590362 C

a score=6426.000000
s hg38.chr1_KI270711v1_random         30084 3 +     42210 AGG
s panTro4.chr1_GL389150_random        97091 3 +    113811 AGG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374480 3 + 229942017 AGG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274227 3 +    297174 AGG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908679 3 + 227556264 AGC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201412003 3 - 220367699 AGC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026774 3 -   1280666 AGG
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197964673 3 - 215897965 AGC
i nasLar1.chr1                    I 5 I 31
s calJac3.chr18                     3661337 3 +  47448759 AGG
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850 0 + 229590362 C

a score=61594.000000
s hg38.chr1_KI270711v1_random         30087 31 +     42210 CTTTTCCACAGGTGTAAGATATCAAACTTTT
s panTro4.chr1_GL389150_random        97094 31 +    113811 CTTTTCCACAGGTGTAAGATATCAAACTTTT
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374483 31 + 229942017 CTTTTCCACAGGTGTAAGATATCAAACTTTT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274230 30 +    297174 CTTTTCCACAAGTCTAAGGTATCAAA-TTTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908682 31 + 227556264 CTTTTCTGCAAGTGTAAGATATGAAACTTTT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201412006 31 - 220367699 CTTTTCTGCAAGTGTAAGATATGAAACTTTT
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026777 31 -   1280666 CTTTTCCACAGGTGTAAGATATCAAACTTTC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s calJac3.chr18                     3661340 31 +  47448759 CTTTTCCACACATAAAAGATGTCAAACTTTT
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197964676 31 - 215897965 I
e rheMac3.chr1                     94871850  0 + 229590362 C

a score=293495.000000
s hg38.chr1_KI270711v1_random         30118 113 +     42210 AGCCTGCCCTGATTTCCTCTGGGTCTTCTGCAGTT---TTGTCTGTATCCACTAGAAAGTGAATGAATAATTCATTTGTAAAAAATGTTGTCTTGCCTGTCTCAGTATTCTTCTTG
s panTro4.chr1_GL389150_random        97125 113 +    113811 AGCCTGCCCTGATTTCCTCTGGGTCTTCTGCAGTT---TTGTCTGTATCCACTAGAAAGTGAATGAATAATTCATTTGTAAAAAATGTTGTCTTTCCTGTCTCAGTATTCTTCTTG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374514 113 + 229942017 AGCCTGCCCTGGTATCCTCTGGGTCTTCTGCAGGT---TTTTCTGTATCCACAAGAAAGTGAATGAATAATTCATTTTTAAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTG
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274260 113 +    297174 AGCCTGCCCTGATGTCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATTCACTAAAAAGTGAATGAATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908713 113 + 227556264 AGCCTGCACTGATATCCTCTGCATCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATGAATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTATTCTTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201412037 113 - 220367699 AGCCTGCACTGAAATCCTCTGCATCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTgaatgaataattcatttttaaaaaatgttttctttcctgtctcaGTATTATTCTTG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1026808 113 -   1280666 AGCCTGCCCTGATATCCTCTGGGTCTTCTGCAGTT---TTTTCTGTATCCACTAGAAAGTGAATGAATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTC
i chlSab2.chr20_KE148050v1_random C 0 I 762
s nasLar1.chr1                    197964707 111 - 215897965 AGCCTGCGCTGATATCCTCTGCATCTTCTGCAA-T---TTTTCTCTATCCACTAGAAAGTG-ATGAATAATTCATTTTTTAAAAATGTTTTCTTTCCTGTCTCAGTATTCTTCTTA
i nasLar1.chr1                    I 31 C 0
s calJac3.chr18                     3661371 113 +  47448759 AGACGGCCATGATATCTTCTGTG--TTCTGCATTTTTGTTTTCTGTACCTACTGAAAAGTTAATGAATAATTTATCTTT-AAAAATATTTTCTCCCCTGACTCAGTGTTCTCCTCG
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C

a score=1238082.000000
s hg38.chr1_KI270711v1_random         30231 480 +     42210 CTGTTTCCCATTGTTATGTTGATTTC-TTTTTTCTCACTGGGGCAC------------CATCTT-TGCTTTTCATTACACTCTAGACCAGTTTGACATCCCTATGTCCAGAGCTCTTCCTCTA--TGTGGGTTGATTTGGTT-TTTGATGTCACTGAGCGCTACATTTTATACTTGTCACTTATGGATGTCATTCTAGTGTCACAAGAGCTCTTTTCAAGGTATCAAGTGATCAAAATCATTTATATAGAGATCTCCTGAAAACATGTGTGACCATCTATCTTGGGAAGTTTCATAAACCTGATGCTATTTTGTTGTTTCCATTTTGTTTTCCCATATACTGAAAAGAACAGGGCCATGAGCGGTTCTTATGCAATATGGTTTGATATATA---TTTTGTTGAGATGACCTAACACCATTGATTTTGGGTTGCATTCCACTAACAGAACATGGCAAGATCAAGGTTATGGTCACGGTTGGTTGGTGATCCTCAGTGT-----TGC--
s panTro4.chr1_GL389150_random        97238 479 +    113811 CTGTTTCCCATTGTTATATTGATTTC-TTTTTTCTCACTGGGGCAC------------CATCTT-TGCTTTTCATTACACTCTGGACCAGTTTGACGTCCCTATGTCTAGAGCTCTTCCTCTA--TGTGGGTTGATTTGGTT-TTTGATGTCACTGAGTGCTACATTTTATACTTGTCACTTATGGATGTCATTCTAGTGTCACAAGAGCTCTTTTCAAGGTATCAAGTGACCAAAATCATTTATATAGAGATCTCCTGAAAACATGTGTGACCATCTATCTTGGGAAGTTTCATAA-CCTGATGCTATTTTGTTGTTTCCATTTTGTTTTCCCATATACTGAAAAGAACAGGGCCATGAGCGGTTCTTATGGAATATGGTTTGATATATA---TTTTGTTCAGATGACCTAACACCATTGATTTTGGGTTGCATTCCACTAACAGAACATGGCAAGATCAAGGTTATGGTCATGGTTGGTTGGTGATCCTCAGTGT-----TGC--
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107374627 484 + 229942017 CTGCATCCCATTGTTATGTTGATTT--TTTTTTCTTACTGGGGCAC------------CATCTT-GGGTTTTCATTACACTCTAGACCAGTTTGACATCCCTACATCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTTAATGTCACTGAGCACTACATTTTATACTTGTCACTTATAGATGTCATTCTAGTGCCACAAGACCTCTTTTCAAGGTATCAAGTGATCAAAATCATTTATATAGAGGTCTCCTGAAAAAATGTGTGACCATCTATCTTGGGAAGTTTTGTAAAACTGATGCTATTTTGTTGTTTCCATTTTGTTTTCCCATATACTGAAAAGAACAGGGTCACGAGCAGTTCTTATGGAATATGGTTTGATATATA---TTTTGTTGAGATGACCTAACACCATTGATTTTTGGTTGCATTCCACTAACAGAACATAGCAAGATCAAGGTTATGGTCAGGGTTGGTTGGTGATCCTCAGTGTTTCTCTGC--
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274373 487 +    297174 CTGCATCCCATTGTTACGTTGATTTCTTTTTTTCTTACTGGGGCAC------------CATCTT-GGCTTTTCATTACACTCTAGACAAGTATGACATCCCAACAACCAAAACTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTTAATGTCACTGAGCACTACATTTTATACTTGTCACTTATGAATGTCATTCTAGTGCCACAAGAGCTCTTTTCAAGGTATCAAGTGATCAAAACCATTTATATAGGGATCTCCTGAAAACGTGTGTGACCATCTATCTTGGGAATTTTTGTAAACCTGATGCTATTTTGTTGTTTCCATTTTGTTTTCCCATATACTGAAAAGAACAGGGCCACGAGCAGTTCTTATGGAATATGGTTTGATACATA--TTTTTGTTGAGTTGGACTAATACCATTGATTTTTTGTTTCATTCCACTAACAGAACATGGCAAGATCAAGGTTACGGTCAGGGTTGCTCGCTGATCTTCAGTGTTGCTGTGC--
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211908826 491 + 227556264 CTGCATCTCATTGTTATGTTGATTTC-TTTTTTCCTACTGGGGCACCAGTAAGAAAAGCATCTT-GGC-TTTCACTACACTCTAGACCAGTTTGACATCCCTATGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTAT-TTTCATGGCACTGAGCACCACATTTCATACTTGTCAATTGTGGATGTCATTCTAGTGCCTCAAGAGCTCTTTTCAAGGGATCAAGTGATCAAATTCATGTATATAGAGATCTCCTGAAAACATGTATGACCATCTATCTTAGGAAGTTTCATAAACCTGATGCTATTTGGTTGTTTCCCTTTTGTTTTCCCATATACTGGAAAGAACAGGGCCATGAGCGGCTCTTATGGAATATGTTTTGATATATA---TTTTGTTGAGTTGGACTAACATCATTCATTTTTGGTTTCATTTCACTAACAGAACATGGCAAGATCGAGGTTACGGTCAGGGTTGGCTGGTGATCCTCAGTGG-----TGC--
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201412150 490 - 220367699 CTGCATCTCATtgttatgttgattt--ttttttcttactggggCACCAGTAAGAAAAGCATCTT-GGC-TTTCACTACACTCTAGACCAGTTTGATATCCCTATGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTAT-TTTCATGGCACTGAGCACCACATTTCATACTTGTCAATTGTGGATGTCATTCTAGTGCCTCAAGAGTTCTTTTCAAGGGATCAAGTGATCAAACTCATGTATATAGAGATCTCCTGAAAACATGAATGACCATCTATCTTAGGAAGTTTCATAAACCTGATGCTATTTGGttgtttcccttttgttttccCATATACTGGAAAGAACAGGGCCATGAGCGGCTCTTATGgaatatgttttgatatata---ttttgttgAGTTGGACTAACATCATTcatttttggtttcatttcaCTAACAGAACATGGCAACATCGAGGTTATGGTCAGGGTTGGCTGGTGATCCTCAGTGG-----TGC--
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1027683 481 -   1280666 CTGCAACCCACTGTTATGTTGATTT--CTTTTTCTCAGTGGGGCAC------------CATCTTGGGC-TTTCATTACACTCTAGACCTGTTTGGCATCCCTACGTCCAAAGCTCTTCCTCTA--TGTGGGTTGATTTGTTT-TTCAATGTCACTGAGCACTACATTTTATACTTATCACTTATGGATGTCATTCAAGTGCCACAAGACCTCTTTTCAAGGTATCCAGTGATCAAAATCATTTATATAGAGGTCTCCTGAAAACACGTGTGACCATCTATCTTGGGAATTTTTGTAAACCTGATGCTATTTTGTTGTTTCCATTTTGTTTTCCCATATACTGAAAAGAACAGGGCCACGAGCAGTTCTTGTGGAATATGGTTTGATGTATA---TTTTGTTGAGCTGGACTAACACCATTGATTTTTGGTTGCATTCCACTAACAGAACATGGCAAGATCACGGTTCTGGTCAGGGCTGGTTGGTGATCCTCAGTGT-----TGCTG
i chlSab2.chr20_KE148050v1_random I 762 C 0
s nasLar1.chr1                    197964818 480 - 215897965 CTGCATCTCATTGTTACGTTGATTTC-TTTTTTCTTACTGGGGCAC------------CATCTT-GGCTTTTCATTGCACTCTAGACCAGTTTGACATCCCTATGTCCAAAACTCTTCCTCTA--TGTGGGTTGATTTGTAT-TTTAATGGCACTGAGCACCACATTTCATACTTGTCAATTGTGGATGTCATTCTAGTGCCTCAAGAGCTCTTTTCAAGGGATGAAGTGATCAAACTCATGTATATAGAGATCTCCTGAAAGCATGTGTGACCATCTATCTTAGGAAGTTTCGTAAACCTGATGCTATTTGGTTGTTTCCCTTTCGTATTCCCGTATACTGGAAAGAACAGGGCCATGAGCAGTTCTTACGGAATATGTTTTGATATATA---TTTTGTTGAGTTGGACTAACATCATTAATTTGTGGTTTCATTTCACTAACAGAACATGGCAAGATCAAGGTTGTGGTCAGGGTTGGTTGGTGATCCTCAGCGG-----TGC--
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3661484 485 +  47448759 ATGCATCCCATTGTTATGTTGATTTC-TTTTCTCTGACTGGGGTAG------------CATCTT-GGCTTTTTATTACACTTAAGACCA-TTTCACATCCCTATGTGCAAAGCTCTTCCTCTATCTGTGGGTTGATTTGTTTCCTTAATGTCACTGAACACT-CGTTTTATACTTGTCACTTACCAATATCATTGT-GTCCCACAGGCATTCTTTTCAAGGTATCAAGTGATCAAAATCATTTGCGTATA--TCCCCTAAAAACATGTGTGAACATATATTTTGGGAAGTCTTGTAAACCTAATGCTATTTTTTTGTTTTCATTTAGTTTTTTCATGTATTGAAAGGAATAGGGCCATGAACACTTCTTATGGAGTATTGTAGGAGATATACATTTATATATAGTTGCTATAACACCATTGATGTGTTGTTGCCTTCCACTAACAGAACCTGGCAAGATCATGGTCATGGTCGGGG-TGGTTGATGGTCCTCAGTGTTCCTGTGC--
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C

a score=-4491.000000
s hg38.chr1_KI270711v1_random         30711  3 +     42210 --------A--GT----
s panTro4.chr1_GL389150_random        97717  3 +    113811 --------A--GT----
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107375111  3 + 229942017 --------A--GT----
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274860  3 +    297174 --------A--GT----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211909317  3 + 227556264 --------A--GC----
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201412640  3 - 220367699 --------A--GC----
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1028164  3 -   1280666 --------T--GC----
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197965298  3 - 215897965 --------A--GC----
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3661969  5 +  47448759 --------AGTGT----
i calJac3.chr18                   C 0 C 0
s otoGar3.GL873684                  1600819 15 +   4055569 GGGATTCAA--GGACAC
i otoGar3.GL873684                N 0 N 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850  0 + 229590362 C

a score=4904409.000000
s hg38.chr1_KI270711v1_random         30714 1843 +     42210  
s panTro4.chr1_GL389150_random        97720 1837 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107375114 1816 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    274863 1839 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211909320 1833 + 227556264  
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201412643 1829 - 220367699  
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1028167 1826 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197965301 1831 - 215897965  
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3661974 1794 +  47448759  
i calJac3.chr18                   C 0 M 476
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850    0 + 229590362 C

a score=119534.000000
s hg38.chr1_KI270711v1_random         32557 54 +     42210 GGGCTCGTGTCTCTGCTATACTCAAA-----GTTTAAATGGAGCCCAGCAAGCCAGA------TG
s panTro4.chr1_GL389150_random        99557 54 +    113811 GGGCTCGTGTCTCTGCTATACTCAAA-----GTTTAAATGGAGCCCAGCAAGCCAGA------TG
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107376930 54 + 229942017 GGGCTCGTGTCTCTGTTGTATTCAAA-----GTTTAAATGGAGCCCAGCAAGCCAGA------TC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276702 59 +    297174 GGGCTTATGTCTCTGCTGTACTCAAAATAAGGTTTAAATGGAGCCCAGCAAGCCAGA------TC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211911153 65 + 227556264 GGGCTCGTGGCTCTGCTGTACTCAAAATAAAGTTTAAATGGAGCCCAGCAAACCAGATCTCCTTC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201414472 65 - 220367699 GGGCTCGTGGCTCTGCTGTactcaaaataaagtttaaatggAGCCCAGCAAACCAGATCTCCTTC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1029993 59 -   1280666 GGGCTCGTGTCTCTGCTGTACTCAAAATAAAGTTTAAATGGAGCCCAGCAAGCCAGA------TC
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197967132 65 - 215897965 GAGCTCGTGGCTCTGCTGTACTCAAAATAAAGTTTAAATGGAGCCCAGCAAGCCAGATGTCCTTC
i nasLar1.chr1                    C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e calJac3.chr18                     3663768 476 +  47448759 M
e rheMac3.chr1                     94871850  0 + 229590362 C

a score=807241.000000
s hg38.chr1_KI270711v1_random         32611 294 +     42210 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTCCTCCGCTTTAGAGACCGCATTGAAAATATTCTTGTTCTGCTGCTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCCACCCCCAACTTGATCAAAGTAagaaacagctggg-aaagtcagtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcagatgtgcagtcaatttggggactcactGACAGCATTGACCTTAC
s panTro4.chr1_GL389150_random        99611 294 +    113811 TCCTTTACTTCTA-GGTTCCCTCAACAGTTTCTCCTCTGCTTCAGAGACTGCATTGAAAATATTCTTGTTCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCCACCCCCAAGTTGATCAAAGTAagaaacagctggg-aaagtcagtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcagatgtgcagtcaatttggggactcactGACAGCATTGACCTTAC
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107376984 294 + 229942017 TCCTTCACTTCTA-GGTTCCCTCAACAGTTTCTCCTCTGCTTTAGAGACTGCATTGACAATATTCTTGTTCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCTACCCACAAGTTGATCAGAGTAagaaacagctggg-aaagtcagtgcaaat------------------acaagttcatggccctccttgcagggattctgattcagagggctcagttggggcctggaatgtgtttgttaacatgattcagatgtgcagtcaatttggggaccCGCTGATACCATCGACCTTAT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    276761 313 +    297174 TCCTTTACTTCTA-GGTTCCCACAACAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGTCCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAGCTCAATGCG-TCCTACCCCCAAGTTGATCAGAGTAAGAAACACCTGGGAAAAGTCAGTGCAAATGTTCATTTGCACTGGAGGACAAGTTCGTTGTCCTCCTTGAAGGGATTTGGATTCAGAGGGCTCAGGTGGGGCCTGGAATGTGTCTGTTAACATGACTCAGATGTGCAGTCAATTTGGGGACCCACTGATAGCATCGACCTTAC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211911218 294 + 227556264 TCCTTTACTTCTA-GGTTCCCTCAATAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGTTCTGCTGTTGTGTATTGGCTTCGGAATGATGTGATGCAGctcaatggg-tcctacccccaacttcatcaaagtaagaaacagctggg-aaagtcagtgcaaat------------------acaagttcagtgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacatgactcggatgtgcactgaatttggggacccactgATAGCACTGACCTTAC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201414537 289 - 220367699 TCCTTTACTTCTA-GGTTCCCTCAATAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGTTCTGCTGTTGTGTATTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCTACCCCCAACTTCATCAAAGTAAGAAACAGCTGGG-AAAGTCAGTGCAAAT------------------ACAAGTTCAGTGTCCTCCTTGCA-GGATTCTGATTCAGAGGGCTCA-GTGGGGCCT-GAATGTGTTTGT--ACATGACTCGGATGTGCACTGAATTTGGGGACCCACTGATAGCACTGACCTTAC
i papAnu2.chr1                    C 0 M 651
s chlSab2.chr20_KE148050v1_random   1030052 283 -   1280666 TCCTTTACTTCTA-GGTTCCCTCCACAGTTTCTACTCTGCTTTAGAGACTGCATTGAAAATATTCTTGTTCTGCTGTTGTGTTTTGGCTTTGGAATGATGTGATGCAG------------CTACCCCCAAGTTGATCAGAGTAagaagcacctggg-aaagtcagtgcacat------------------acaagttcattgtcctccttgaagggattctgattcagaaggctcaggtggggcctggaatgtgtttgttaacatgactcagatgcgcagtcaatctggggaccCGCTGATAGCATCgaccttac
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197967197 294 - 215897965 TCCTTTACTTCTA-GGTTCCGTCAACAGTTTCTCCTCTGCTTTAGAGACTGCATTGAAAATATTCTTGTTCTGCTGTTGTGTATTGGCTTTGGAATGATGTGATGCAGCTCAATGGG-TCCTATCCCCAACTTCATCAAAGTAagaaacagctggg-aaagtcggtgcaaat------------------acaagttcattgtcctccttgcagggattctgattcagagggctcaggtggggcctggaatgtgtttgttaacacgactcggatgtgcattgaatttggggacccactGATAGCACTGACCTTAC
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3664246 294 +  47448759 TCCTTCACTTCTAGGGTTCCCCCAATGGTTTCTCTTCAGCTGTACTGACTGCATTGAAAATATTTTTGCTCTGCTTTTGTGTTGTGG-TTTGGAATAATATGATGCAGCTCAGTTTGTTCCCAACCCCAAGTTGATCAGAGTAAGAAACACCTGGG-AAGGTCAGTGATAAT------------------ACAAGTTTATTGTCCTTCTTGCAGGGA-TCTTATTCAGTGGGCTCAAGTGGGGACTGGAAGGTGTTTGTTTGCCTGATTCAGATGTGCAGTCAGTTTGGGGACCCTCTGATACCATGAACCTTAC
i calJac3.chr18                   M 476 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C

a score=839046.000000
s hg38.chr1_KI270711v1_random         32905 422 +     42210  
s panTro4.chr1_GL389150_random        99905 414 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107377278 478 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277074 479 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211911512 487 + 227556264  
i macFas5.chr1                    C 0 I 1
s chlSab2.chr20_KE148050v1_random   1030335 465 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 I 1
s nasLar1.chr1                    197967491 489 - 215897965  
i nasLar1.chr1                    C 0 I 1
s calJac3.chr18                     3664540 461 +  47448759  
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C
e papAnu2.chr1                    201414826 651 - 220367699 M

a score=54.000000
s hg38.chr1_KI270711v1_random         33327 1 +     42210 a
s panTro4.chr1_GL389150_random       100319 1 +    113811 t
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107377756 1 + 229942017 t
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277553 1 +    297174 t
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3665001 1 +  47448759 t
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    197967980 1 - 215897965 I
e rheMac3.chr1                     94871850 0 + 229590362 C
e papAnu2.chr1                    201414826 651 - 220367699 M
e macFas5.chr1                    211911999 1 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1030800 1 -   1280666 I

a score=274753.000000
s hg38.chr1_KI270711v1_random         33328 146 +     42210 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacagaagttag-------ccactgaacctgg-ccCTGAAATGCT-----------------TTTACTTTC
s panTro4.chr1_GL389150_random       100320 146 +    113811 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacagaagttag-------ccactgaacctgg-ccCTGAAATGct-----------------tttactttc
i panTro4.chr1_GL389150_random    C 0 I 2106
s ponAbe2.chr1                    107377757 141 + 229942017 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccccctaggcctccaaaattgctgggattacaggagtaaa-------ccactgagcctgg-ccCTGAAATGTT-----------------TTTG-----
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277554 147 +    297174 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttggacttctggcctcaagtgatcctcccacctaggcctccaaaaatgctgggattacaggagtgag-------tcaccgagcctggccCCTGAAATGCt-----------------tatttattt
i nomLeu3.chr24_GL397604_1_random C 0 I 10
s macFas5.chr1                    211912000 153 + 227556264 tatttttcatagagacaaggtcttgctatgttgctcaggctggttttgaccttctggcctcaagcgatcctcccaactaggcctccaaa--------gattacaggagtgag-------ccattgagcctgg--ccTGAAATGCtttttccttttttttccctttttttt-
i macFas5.chr1                    I 1 C 0
s chlSab2.chr20_KE148050v1_random   1030801 145 -   1280666 tatttttcatagagacaaggtcttgctttgttgctcaggctggttttgaacttctggcctcaagcaatcctctcacctaggcctccaaaagtgctgggattacaagagtgag-------cctctgagcctgg-ccCTGAAATGCT-----------------TTTTGTTT-
i chlSab2.chr20_KE148050v1_random I 1 C 0
s nasLar1.chr1                    197967981 148 - 215897965 tatttttcatanagacaaggtcttgctatgttgctcaggctggttttgaacttctggcctcaagcgatcctcccacctaggcctccaaaagtgctgggattacaggagtgag-------ccactgagcctgg--ccTGAAATGCttttt-------------ttttcttt-
i nasLar1.chr1                    I 1 C 0
s calJac3.chr18                     3665002 143 +  47448759 cattttttgtaaagataaggtcttgctatttagctcaggctagtctagaacttctggcttcaagcaatcatcctacctaggcctccaaaagggctgggaatactggagcgagcTGTAAACCACTCAATTTGG-TTCTAAAATGC---------------------------
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C
e papAnu2.chr1                    201414826 651 - 220367699 M

a score=2592.000000
s hg38.chr1_KI270711v1_random         33474 2 +     42210 TT
s panTro4.chr1_GL389150_random       102572 2 +    113811 TT
i panTro4.chr1_GL389150_random    I 2106 C 0
s ponAbe2.chr1                    107377898 2 + 229942017 TT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277711 2 +    297174 tt
i nomLeu3.chr24_GL397604_1_random I 10 I 1
s macFas5.chr1                    211912153 2 + 227556264 tt
i macFas5.chr1                    C 0 I 1
s chlSab2.chr20_KE148050v1_random   1030946 2 -   1280666 GT
i chlSab2.chr20_KE148050v1_random C 0 I 1
s nasLar1.chr1                    197968129 2 - 215897965 tt
i nasLar1.chr1                    C 0 I 1
e panPan1.JH650558                 26487523 3931 -  32855946 I
e calJac3.chr18                     3665145 0 +  47448759 C
e rheMac3.chr1                     94871850 0 + 229590362 C
e papAnu2.chr1                    201414826 651 - 220367699 M

a score=-4265.000000
s hg38.chr1_KI270711v1_random         33476 2 +     42210 TC
s panTro4.chr1_GL389150_random       102574 2 +    113811 TT
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    207344789 2 - 229507203 TC
i gorGor3.chr1                    N 0 I 7205
s ponAbe2.chr1                    107377900 2 + 229942017 TT
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277714 1 +    297174 t-
i nomLeu3.chr24_GL397604_1_random I 1 C 0
s macFas5.chr1                    211912156 1 + 227556264 t-
i macFas5.chr1                    I 1 C 0
s chlSab2.chr20_KE148050v1_random   1030949 1 -   1280666 T-
i chlSab2.chr20_KE148050v1_random I 1 C 0
s nasLar1.chr1                    197968132 1 - 215897965 t-
i nasLar1.chr1                    I 1 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e calJac3.chr18                     3665145 0 +  47448759 C
e rheMac3.chr1                     94871850 0 + 229590362 C
e papAnu2.chr1                    201414826 651 - 220367699 M

a score=708333.000000
s hg38.chr1_KI270711v1_random         33478 378 +     42210 TTTTTTTT----------------AATGAAAATACTGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTTTTGTTGTT---------ATTATTAT-TTCTACAGtagaatttatacatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccatattccaaaactttcgcaaccatcgccactacctaattccagaatattttcataatgccaaaaagcatgcctgtacctatgggcagacactctccaattccccccttcttgcgctctctgacaaccactaatctaccttctctatatat--tgatgtacttgttctgggcacttcctctatatggaataacaaagtgtggtattttctatctgcttct------tagaatattgttctcaagt
s panTro4.chr1_GL389150_random       102576 378 +    113811 TTTTTTTT----------------AATGAAAATACTGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTTTTGTTGTT---------ATTATTAT-TTCTACAGtagaatttatacatcacaaaattcaccatttttaagcatacatttcagtgtcttgtaccatattccaaaactttcacaaccattgccactacctaattccagaatattttcataatgccaaaaagcatgcctgtacctatgggcagacactctccaattcccctcttcttgcgctctctgacaaccactaatctaccttctctatatat--tgatgtacttgttctgggcacttcctctatatggaataacaaagtgtggtattttctatctgcttct------tagaatattgttctcaagt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107377902 375 + 229942017 TTTTTTTT----------------AATGAAAATACAAGACATGGAGATGTGG--AGACACCTTGCTTTATTACTGTTGTTGTT---------ATTATTAT-TTCTATAGtataattcatatatcacaaaattcacca-ttttaagcatatatttcagtgtcttttaccatattccaaaagttctgcaaccatcaccactacctaattccagaatattttcataatgccaaaaagcatgcctgtacctatgggcagtcactctccaatttcccccttcttgcggtctctgacaaccactaatctactttctcaatatat--agatgtacttgttctgggcacttcctctatatggaataacaaggtgtgtcatttttcaactgcttct------cagcatattgttctcaagt
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    277715 364 +    297174 tcatttTT----------------AATGAAAATACAGGACATGGAGATGTGGAAAGACATCTTGAattattactgttgtcatt---------attattat-tTCTACAGtacaattcatatatcacaaaattcaccatttttaagcatacatttcagtgtcttttaccatatttcaaag-tttcacagccatcaccactacctaattccagaatattttcataataccaaaaa-catgcctg----tatgggcagtcactctccaattccccccttcttgaggtctctgacaaccactaatctactttctct----------atgtacttgttctgggcacttcctctatatggaataacaaaatgtggtgttttacatctggttct------tagcatattgttctcaagt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211912157 367 + 227556264 tttttttt----------------AATGAAAATACAGGACATGGAGATGTGGAAAGACACCTTGCTTTATTACTG------------------TTATTAT-TTCTATAGtataattcatatatcacaaaattcaccatttttaaccacacatttca--gtcttttaccatattccaaaagtttcacaaccatctctactacctcattccagaatattttcataatgccaaaaaccatgcctgtacctacgggcagtcactcttcaattcccccattcttgctgtctctgacaaccactaatctattttctctagatat--agatgtacttgttctgggcacttcctctatagggaataacaaactgtgacattttccatctgtttct------tagcatattgttctcaagt
i macFas5.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1030950 380 -   1280666 TTGTTTTT----------------AATGAAAATACAAGACACGGAGATGTGGAAAGACACCTTGCTttattagtgttattagt---------attattat-tTCTACAGtataattcatatatcacaaaattcaccattttaaagcatacatttcagtgtcttttaccatattccaaaagttttgcaatcatcaccactacgtaattccagaatattttcataatgccagaaagcatgcctgtatctacgggcagtcactctccaattccccgcttcttgcggtctctgacaaccactaatctactttctctatacacagagatgttcttattctgggcacttcctctatatggaataacaaagtgtggcattttacatctgcttct------cagcatattgttctcaagt
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197968133 366 - 215897965 tttttttA----------------AATGAAAATACAGGATATGGAGATGTGGAAAGATACCTTGCTTTATTACTG------------------TTATTAT-TTCTATAGtataattcatatatcacaaaattcaccatttt-aagcatgcatttca--gtctttgaccatattccaaaagtttcacaaccatcaccactacctcattccagaatattttcataatgccaaaaaccatgcctgtacctacgggcagtcactcttcaattccccccttcttgctgtctctgacaaccactaatctactttctctagatac--agatgtacttgttctgggcacttcctctatatggaatcacaaactgtggccttttccatctgtttct------tagcatattgttctcatgt
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3665145 406 +  47448759 --ttttttaaaaaataatagtaaaaataaaaataCAGGGTATGGA-ATATGGAAAGATACCTCACTTTATTACTGTTATATTTTTCttctaaagtataatcttctaaagtataattcatatataacaaaatttaatatttttaagcataccactcagcatcttttactatattccaaaggttttgcaaccatcaccactattcga-accagaatactttcataatgccaaaatgcatgcctgtactttctgccagttactctccaatttcaccatttttgcagtccctgtcagccactaatctaccttctctctctct--ggatatacttgttctggacatttcctgtatatggcataatgcaatgtggccttttgcatctgcatctcttatgtatcacaaagttctcaagg
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C
e papAnu2.chr1                    201414826 651 - 220367699 M
e gorGor3.chr1                    207344791 7205 - 229507203 I

a score=46504.000000
s hg38.chr1_KI270711v1_random         33856 24 +     42210 ttcatcct--ttctagcctgcgtcag
s panTro4.chr1_GL389150_random       102954 24 +    113811 ttcatcct--ttctagcctgcgtcag
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107378277 24 + 229942017 ttcatcct--ttttagcctgcatcag
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278079 24 +    297174 ttcatcct--ttctagcctgcattag
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211912524 12 + 227556264 ttcatcct--tcgt------------
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201415477 24 - 220367699 ttCATCCT--TCGTAACCTGCATCAG
i papAnu2.chr1                    M 651 C 0
s chlSab2.chr20_KE148050v1_random   1031330 24 -   1280666 ttcatcct--ttttagcctgcatcag
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197968499 24 - 215897965 ttcatcct--tcgtaacctgcatcag
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3665551 26 +  47448759 ttcatctttgttgtaccatgcattgg
i calJac3.chr18                   C 0 I 766
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850  0 + 229590362 C
e gorGor3.chr1                    207344791 7205 - 229507203 I

a score=894580.000000
s hg38.chr1_KI270711v1_random         33880 341 +     42210 tacttcaac--tttttatggccagataatattccactatatggttataccacattttgtttat----tcatcaactcatggtggtttaag------------------------------------------atgtttccactttttaactattaggaataatgctgctgtgaacagctttgtacaggtttttgagtgaacatctgtttttcattttcttggttataaacctaggagtgcaattgctgcatcatatgtcactttatgtttcacttttt---------------------gaggaactcacacactgtttactaacttcagtagctacatcattttagattcccaatagtaatatatgagaattccatattctccatcacttttgaaacatgtgttgtctt
s panTro4.chr1_GL389150_random       102978 357 +    113811 tacttcaac--tttttatggccagataatattccactatatggttataccacattttgtttat----tcatcaactcatggtggtttaag------------------------------------------atgtttccactttttaactattatgaataatgctgctgtgaacagctttgtacaggtttttgagtgaacatctgtttttcattttcttggttataaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttt---ttatgt--ttaactttttgaggaactcacacactgtttactaacttcagtagctacatcattttagattcccattagtaatatatgagaattcgatattctccatcacttttgaaacatgtgttgtctt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107378301 355 + 229942017 tacttcaac-ttttttatggccaaataatattccaccatatggttataccacattttgtttat----tcatcaactgatggtggtttaag------------------------------------------atttttccactttttaactattatgaataatgctgctatgaacagctttgtacatgtttttgagtgaaca--tgtttttcattttcttggttataaacctaggagtgcaattgctgcatc--atgtcactttatgtttaactttct--tttatgt--ttaactttttgaggaactcacacactgtttaccaacttcagtggctatgccattttacatccccaccagtaatatatgagaattccatattctccataactttccaaacatgtgttgtctt
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278103 357 +    297174 tacttcact--tttttatggccaaataatattccactatatggttataccacattttgtttat----tcatcaactgacagtggtttaag------------------------------------------atgtttccactttttaactattatgaataatgctgctatcaacacctttgtagatgtttttgagtgaacacctgtttttcattttctcagttgtaaacctaggagtgcaattgctgcatcatatgtcactttatgtttaacttttt---ttatgt--ttaactttttgaggaactcacacactgtttaccaacttcagtagctatatcattttacattcccaatagtaatatatgagaattccatattctccataactttccaaacatgtattatctt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211912536 358 + 227556264 tacatgaac---ttttatggcccaataatatgccactatat-gttacaccacattttgtttat----tcatcaactgatggtggtttaag------------------------------------------atgtttccactttttaactattaagaataatgctgctatgtacagctttgtacaagtttttgagtgaacacctgtttttcattttcttggttataagcctacgagtgcaattgctgcatcatatgtcactttatgctttacttttt--ttgttgttgttaaattttcgaggaactcacacactgttcaccaaattcagtagctatgccattttacattcccaacagtaatatgtgagaattccatattctccataactttccaaacatgtattgtctt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201415501 361 - 220367699 TACATGAAC---TTTTATGGCCCAATAATATGCCACTATATGgttacaccacattttgtttat----tcatcaacTGATGGTGGTTTAAG------------------------------------------ATGTTTCCACTTTTTAACTATtaagaataatgctgctatgagcagCTTTGTACAAGTTTTTGAGTGAAcacctgtttttcattttcttggttataAGCCTACGAGTGCAATTGCTGCATCATATGTCACTTTATGcttaacttttttgttgttgttgttaaattttAGAGGAACTCACACACTGTTCACCAAATTCAGTagctatgccattttacattcccaacagtaaTATATGAGAATTCCATATTCTCCATAACTTTCCAAACAtgtattgtctt
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1031354 353 -   1280666 tacttcaac-ttttttatggctaaataatatttcactatatggttataccacattttgtttat----tcatcaactgatggtggtt-----------------------------------------------tgtttccactttttaactattatgaataatgctgctatgaacagctttgtacatgtttttaagtgaacatctgtttttcattttcttggttattaacctaggagtgcaattgctgcatcatatgtcactttatgtttaactttta--tttatgt--ttaactttttgaggaattcacacactgtttaccaacttcagtggctacaccattttacattccccctagtaatatatgagaatttcatattctctgtaa-tttccaaacatgtattgtctt
i chlSab2.chr20_KE148050v1_random C 0 I 311
s nasLar1.chr1                    197968523 358 - 215897965 tacatgaa----ttttatggcccaataatatgccactatacggttacaccacattttgtttat----tcatcaactgatggtgatttaag------------------------------------------atgtttccactttttaactattaagaataatgctgctatgaacagctttgtacaannntttgagtcaacacctgtttttcattttcttggttataagcctaggagtgcaattgctgcatcatatgtcactttatgttcaacttttttttttttgt--taaactttttgagaaactcacacactgttcactaaattcagtagctatgccattttacattcccaacagtaatatatgagaattccatattctccataactttccaaacatgtattgtctt
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3666343 386 +  47448759 tacttcagtcctttttatggccaaataatattccattttatagttataccacattttgtttatctgctcatcaaaggatggctgttagggttttccactttttcactatttcacttttccacacttttcactatgtttccactttttcactattatgaataatgctgctgtgaacatttatgcacatgtttttgagtgaacagttgtttttaattttcttgattatataccttggagtgcaattgctgcctcatatgtgactttatgtttcacttttt---------------------gaggaactaacagactgttttccaacctcagtggctataccaatttgcattcccac---taatatatgggaattctgttttctccataactttccaaacatatgttgtctt
i calJac3.chr18                   I 766 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C
e gorGor3.chr1                    207344791 7205 - 229507203 I

a score=501826.000000
s hg38.chr1_KI270711v1_random         34221 193 +     42210 tatttttttcttaagtcatactgctgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgacgaaaaacattgaacatctttgcatgtgcttcttggccatttgtgtgtttcctttagagaaacctctactcacagc-tttttttccccattgttaaatgtgg----ttgtcgtttattgctca
s panTro4.chr1_GL389150_random       103335 192 +    113811 tatttttttcttaagtcatactgctgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgacgaaaaacattgaacatctttgcatgtgcttcttggccatttgtgtgtttcctttagagaaacctctactcacagc-tttttt-ccccattgttaaatgtgg----ttgtcgtttattgctca
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107378656 195 + 229942017 tatttttttcttaagtcatactagtgggtatgaagtggtatctcattttggcttaaatgtacattttcctaatgatgaaaaacattgaacatctttgcatgtgcttcttggccatttgtgtgtttgctttagagaaacctctactcacaga-cttttt--cccactgttaaatttggttgtttgtcatttattgctca
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    278460 188 +    297174 tatttttttcctaagtcatactagtgggtgtgaagtggtatcgcattttggtttaagattacattttcctaat---gaaaaacattgaatatctttgcatgtgcttcttggccatttgtgtgtttcctttagagaaacctctactcacagc-tttttt--cccattgttaaatttgg----ttgtcatttattgctca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211912894 195 + 227556264 tatttttttcttaagtcatagtagtgggtgtgaactggtatctcattttggtttaaatttacattttcctaatgatgaaaaacattgaacatcttagcatgtgcttcttggccatttgtgtgttt-ccttagagaaacctctactcacagcttttttt--cccattgttaaattgggtcgtttgtcgtcttttgctca
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201415862 194 - 220367699 tatttttttcttaagtcataGTAGTGGGTGTGAactggtatctcattttggtttaaatttacattttcctaatgatgaAAAACATTGAACATCTTAGcatgtgcttcttggccatttgtgtgttt-CCTTAGAGAAACCTCTACTCACagcttttttt--ctcattgttaaattgggttgtttgtcgt-TTTTGCTCA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032018 195 -   1280666 tatttttttcttaagtcatactagtgggtgtgaagtggtctctcattttggtttaaatttacattttcctaatgatgaaaaacactgaacatctttgcatgtgcttcttggccatttgtgtgtttgctttagagaaacctctactcacagc-ttttta--cccattgtcaaatttggttgtttgtcatttattgctca
i chlSab2.chr20_KE148050v1_random I 311 C 0
s nasLar1.chr1                    197968881 194 - 215897965 tattttttccctaagtcatagtagtgggtgtgaagtggtatctcattttggtttaaatttacattttcctaatgatgaaaaacattgaacatcttagcatgtgcttcttggccatttgtgtgttt-ccttagagaaacctctactcacagc-tttttt--cccattgttaaatttggttgtttgtcgtttcttgctca
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3666729 188 +  47448759 -----ttttgtgaagtcatactggtgagtctgatgtgatatctcattttgatttaagtttgcattttcctaatgatgaaaaacattgaacatctttgcatgtgctttttagccatttgtatgtatcctttacagaaatgtctattcaaacc-ttttct--ttcattgttaaattgggtaattgggctttttttcta--
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e rheMac3.chr1                     94871850   0 + 229590362 C
e gorGor3.chr1                    207344791 7205 - 229507203 I

a score=2977802.000000
s hg38.chr1_KI270711v1_random         34414 876 +     42210  
s panTro4.chr1_GL389150_random       103527 876 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107378851 869 + 229942017  
i ponAbe2.chr1                    C 0 I 9026
s nomLeu3.chr24_GL397604_1_random    278648 862 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94871850 882 + 229590362  
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211913089 880 + 227556264  
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201416056 880 - 220367699  
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1032213 863 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 I 6493
s nasLar1.chr1                    197969075 873 - 215897965  
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3666917 898 +  47448759  
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e gorGor3.chr1                    207344791 7205 - 229507203 I

a score=187176.000000
s hg38.chr1_KI270711v1_random         35290 84 +     42210 ----gtcaactatcctgttacttaggtattatcctgttcctgatgagaaaacaaactcagaaagattgcaaaatttccctaggtcaca
s panTro4.chr1_GL389150_random       104403 84 +    113811 ----gtcaactatcctgttacttaggtattatcctgttcctgatgagaaaacaaactcagaaagattgcaaaatttccctaggtcaca
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279510 84 +    297174 ----atgaactatcatgttacttaggtattatcctgctcctgatgagaaaacaaactcagaaagattgcaaaatttccccaggtcaca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94872732 84 + 229590362 ----atgaacaatcctgttacttaggtattatcctgctcctgatgagaaaacaaactcagaaagattgcaaaatttccataggtcaca
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    211913969 84 + 227556264 ----atgaactagcctgttacttaggtattatcctgttcccgatgagaaaacaaactcagaaagatgggaaaatttccctaggtcaca
i macFas5.chr1                    C 0 I 808
s papAnu2.chr1                    201416936 84 - 220367699 ----ATGAACTAGCCTGTTACTTAGGTATTATCCTGTTCCCGATGAGAAAACAAACTCAGAAAGATGGGAAAATTTCCCTAAgtcaca
i papAnu2.chr1                    C 0 I 438
s nasLar1.chr1                    197969948 84 - 215897965 ----atgaactagcctgttacttaggtattatcctgttcctgatgagaaaacaaactcagaaagattggaaaatttccctaggtcaca
i nasLar1.chr1                    C 0 C 0
s calJac3.chr18                     3667815 83 +  47448759 GTATACGAACTA-----TTACTtaggtattgtcctgttcctgatgagaaaacagactcagaaagattacaaaattaccctaggtcaca
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=195652.000000
s hg38.chr1_KI270711v1_random         35374 186 +     42210 aaactagtgaggagaggagtaagaattagatatccgttccttttggccttcaaagctaaccttgtaccattagatcaaactgATTTACA-tacttttgctggaattagtctcagactt-gtggttctcacttgattttcccaag----------------------gaaacagtgtgccactttaatatcgtttcaaactttgaaattta
s panTro4.chr1_GL389150_random       104487 186 +    113811 aaactagtgaggagaggagtaagaattagatatccgttccttttggccttcaaagctaaccttgtaccgttagatcaaactgATTTACA-tacttttgctggaattagtctcagagtt-gtggttctcacttaattttcccaag----------------------gaaacagtgtgccactttaatatcatttcaaactttgaaattta
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279594 187 +    297174 aaactagtgaggagaggaataagaattagaaaccagttccttttggccttcaaagcTAACCATGTACCATTAGATCAAACTGATTTACA-CACttttgctggaattagtctcagagttcatggctctcgcttgattttcccaag----------------------gaaattgtgtgccactttaatgtcatttcaaactctgaaattta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94872816 187 + 229590362 aaactagtgacgagaggaaaaagaattagaaaccagttccttttggccttcaaagctaaccttgtaccattagatcaaactgATTTACA-tacttttgctggaattagtctcagagtttgtggttctcacttgattttcccaag----------------------gaaacagtgtgccactttaatatcatttcaaactttgaaattta
i rheMac3.chr1                    C 0 C 0
s nasLar1.chr1                    197970032 209 - 215897965 aaactagtgaggagaggaacaagaattagaaaccagttccttttggccttcaaagctaatcttgtaccattagatcaaactgATTTACA-TACCTTTGCGGGAATTTGTCTCAGAGTTTGTGGTTCTCACTTGATTTTCTAGAAAATGGTTAAACATTTTCTAGATGAAACAGTgtgccactttaatatcatgtcaaactttgaaattta
i nasLar1.chr1                    C 0 N 0
s calJac3.chr18                     3667898 185 +  47448759 aatccagtgatgaatcaaataagaattagaaagcagtttcttttggccttcaaagcttactttataccattagatcaaactgAATGATagtacttttgctagaataagtctcagagt--gtggttctagactgattttcc-atg----------------------aaaacattgagtcattttagtagtatttcaaacttttaaatttc
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=451.000000
s hg38.chr1_KI270711v1_random         35560 4 +     42210 aaac
s panTro4.chr1_GL389150_random       104673 4 +    113811 aaac
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279781 2 +    297174 aa--
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94873003 4 + 229590362 aaac
i rheMac3.chr1                    C 0 I 2
s calJac3.chr18                     3668083 4 +  47448759 aaag
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=2563.000000
s hg38.chr1_KI270711v1_random         35564 3 +     42210 tct
s panTro4.chr1_GL389150_random       104677 3 +    113811 tct
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279783 3 +    297174 ctt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94873009 3 + 229590362 ttt
i rheMac3.chr1                    I 2 I 10
s nasLar1.chr1                    110523927 3 - 215897965 tct
i nasLar1.chr1                    N 0 I 141
s calJac3.chr18                     3668087 3 +  47448759 tct
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=84310.000000
s hg38.chr1_KI270711v1_random         35567 118 +     42210 -tttt-----attatacttttttgtctttgttctattccgttgcttttggtttcttctcaacggatccctcttatttatatgctaaatatttgttacctattttctgtcaattttcacattttt
s panTro4.chr1_GL389150_random       104680 118 +    113811 -tttt-----attatacctttttgtctttgttccattccattgcttttggtttcttctcaacggatccctcttatttatatgctaaatatttgttacctattttctgtcaattttcacattttt
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279786 118 +    297174 -tttt-----attatacttttttgtctttgttctgttccatttcttttgatttcttctcaacagatccctcttatttatatgctaaatatttgttacctattttctgtccattttcacattttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s rheMac3.chr1                     94873022 123 + 229590362 -ttttaaaaaattatacttttttgtctttgttctagtccattgcttttggttttttctcaatggatccctcttatttatatgctaaatatttgctacctattttctgtcaattttcactttttt
i rheMac3.chr1                    I 10 N 0
s calJac3.chr18                     3668090 121 +  47448759 ttttt--aaaattataccttattgtgtttgtcctattccatt-tttttcttttttcctcaacagattcctattatttatccactcaatatttgttacctatcctctgtcaatttttatttcttt
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110523930 141 - 215897965 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=3522.000000
s hg38.chr1_KI270711v1_random         35685 8 +     42210 gagtgttt
s panTro4.chr1_GL389150_random       104798 8 +    113811 gagtgttt
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279904 8 +    297174 gagtgttt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668211 8 +  47448759 gagctttt
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110523930 141 - 215897965 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=1862.000000
s hg38.chr1_KI270711v1_random         35693 4 +     42210 gtta
s panTro4.chr1_GL389150_random       104806 4 +    113811 gtta
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279912 4 +    297174 attt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    110524071 4 - 215897965 gtta
i nasLar1.chr1                    I 141 I 303
s calJac3.chr18                     3668219 4 +  47448759 gtca
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=124982.000000
s hg38.chr1_KI270711v1_random         35697 290 +     42210 tctGTC----TGTTGTATGCTAACAGttcttcactgaggtaaaatttgcgtagagtatactgcaaaaaaacctaaaggcacagcttaataaattttaatataattata-attgtaaagtaacacccagttaaagacagagaacattttcccccatgccacaaagttctgatgtggtccttgccagtcaatactcatcccccaaatgaagaatatattctgaatgttgtcactgccttagcccctttgtgttgctgga-aaggaataccagaggctgggtaagttatcaagacaaga
s panTro4.chr1_GL389150_random       104810 290 +    113811 tctGTC----TGTTGTATGCTAACAGttcttcactgaggtaaaatttgcatagagtatactgcaaaaaaacctaaaggcacagcttaataaattttaatataattata-attgtaaagtaacacccagttaaagacagagaacattttcccccatgccacaaagttctgatgtggtccttgccagtcaatactcatcccccaaatgaagaatatattctgaatgttgtcactgccttagcccctttgtgttgctgga-aaggaataccagaggctgggtaagttatcaagacaaga
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    279916 295 +    297174 tctctctctttgttGTATGCTAACAGttcttcactgagatataatttgcatagagaatactgc-aaaaaacctaaaggtacagctttataaattttaatataattatacattgtataataacacccagttaaagacagagaacattttcccacatgccacaaggttcttatgtggcccttgccagtcaatattcatcccccaaatgaagaatatattctgaatgttgtcactgccttagtccctttgtgttgctggaccggggataccagtggctgagtaatttataaagaaaaga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668223 290 +  47448759 cctttt----tgttTTATGCTAACAGCtcttcactaaggtataatttgcatggtgtaaactacaagaaaacttatgggtacagcttaatgagttttaatataattatacattgtatcataatacccatatcaaggtagagaacattttcctctatgccaaaatgttcttatgtgttccttgccagtc-atactcatcccccaaatgaggaatatattctaaatgttgtcactgtattagtccctttgtgttgctata-aaggaataccagagactcagttaattataaagaaaaga
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524075 303 - 215897965 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=1000.000000
s hg38.chr1_KI270711v1_random         35987 1 +     42210 g
s panTro4.chr1_GL389150_random       105100 1 +    113811 g
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280211 1 +    297174 g
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    110524378 1 - 215897965 g
i nasLar1.chr1                    I 303 I 4851
s calJac3.chr18                     3668513 1 +  47448759 g
i calJac3.chr18                   C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=177166.000000
s hg38.chr1_KI270711v1_random         35988 419 +     42210 gtgccttttgctcatagttctgcaggctgtacaagaagcatggcccccgcatctgctcctaatgagggcctgaggctgcttccacttgcagcagaaggtgaaaaggaaccagggtgtgcagagatcatatggcgagagaggaagcaaaagagagc------aaggaaaggtgagaggcactttttaataaccagctcctacaggaactaagagagtgagaattcactcactaccttctcccagggtggggattcatctattcatgagggatccactcccatgacccaaacacctcccatttacccccacctccaacactggggaccacatttgaacatgtgatttggaggggaccaatatttaaact-tagcagccaccatagattcattttgcttgatcatgtgcttcataaaaatggaatcatT
s panTro4.chr1_GL389150_random       105101 419 +    113811 gtgccttttgctcatagttctgcaggctgtacaagaagcatggctcccgcatctgctcctaatgagggcctgaggctgcttccacttgcagcagaaggtgaaaaggaaccagggtgtgcagagatcatatggcgagagaggaagcaaaagagagc------aaggaaaggtgagaggcactttttaataaccagctcctacaggaactaagagagtgagaattcactcactaccttctcccagagtggggattcatctattcatgagggatccactcccatgacccaaacacctcccatttacccccacctccaacactggggaccacatttgaacatgtgatttggacgggaccaatatttaaact-tagcagccaccatagattcattttgcttgatcatgtgcttcataaaaatggaatcatT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280212 412 +    297174 gtgcattttgctcatagttctacaggctgcacaagaatcatggcacccgcatctgctcctaattagggcctgaggctgcttccacttgcagc---aggtgaaaaggaaccagtgtgtgcagagatcacatggtgagagaggaagcgaaagagagt-----------aaggtgagaggcactttttaataaccagctcctacaggaactaagagagtgagaattcactcactaccttctcccagggtggggattaatctattcatgaaggatccactcccgtgacccaaacacctcccattaacacccacctccaacactggggaccacatttaaacatgtgatttggaagggaccaatatttaaactatagaagccaccagagattaattttgcttattgatgtgcttcatgaaaatggaatcatt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s calJac3.chr18                     3668514 422 +  47448759 gcatatttccaacatagttctgcaggctgcacaagaagcatggcaccaacaactgcttttaatgagggcctgaggctgcttctcctcacgacagaagatgaaaggcaaccagtgtgtgcaaagatcgtgtggtgagagaggaagcaaaagagagagacagagaggaacagtgcaag--actctttaataaccagctcttgcaggaactaaaagagtgagaattcactcactgccttctcctagggagaggataaataagttcatgggggatccactcccatgatcc-aacacctcccattaagcctaacctccaatgctggggatcaaatttaaacatgaga-taggagggaacaaatacgtaaactctatcagccatggcagattaagtttacttatttttgtgcttcataacaatgaaattatt
i calJac3.chr18                   C 0 I 2358
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=41261.000000
s hg38.chr1_KI270711v1_random         36407 170 +     42210 TTggctgggcctggtggctcatgcctgtaatcccaagactttgcaaggctgaggcgggcagatcacctgaggtcaggcgttcaagaccagcctggccaacatggtaaaaccctgcctctactgaaaatacaaaaaattagccaggcatggtggccggtgcctgtaatccc
s panTro4.chr1_GL389150_random       105520 170 +    113811 TTggctgggcctggtggctcatgcctgtaatcccaagaatttgcaaggctgaggcgggcagatcacctgaggtcaggtgttcaagaccagcctggccaacatggtaaaaccctgcctctactgaaaatacaaaaaattagccaggcatggtggccggtgcctgtaatccc
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    280624 167 +    297174 ttggccagtcctggtggttcacgcctgtaatcccaagac--tgcgaggctgaggcggacagatcacctgaggtcaggagttcaagaccagcctggccaacatggtaaaactctgtctctactgaaaatac-gaaaattagccaggtgtggtggcaggtgtctttaatccc
i nomLeu3.chr24_GL397604_1_random C 0 I 4013
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=2470.000000
s hg38.chr1_KI270711v1_random         36577 35 +     42210 agGCACCGGATATGTACTGG---------------TATCTCATATGTACA
s panTro4.chr1_GL389150_random       105690 50 +    113811 agGCACCGGATATGTACTGGTATCTCATATGTACATATCTCATATGTACA
i panTro4.chr1_GL389150_random    C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e nomLeu3.chr24_GL397604_1_random    280791 4013 +    297174 I

a score=29441.000000
s hg38.chr1_KI270711v1_random         36612 114 +     42210 ggatatgtactggtatctcattgttgtattgattgatgttcctgctggctaaacagtagagcatcttttcctatgctaattgaccattcatgtatcttcttttcttaagtacct
s panTro4.chr1_GL389150_random       105740 114 +    113811 ggatatgtaccggtatctcattgttgtattgattgatgtccctgatggctaaacagtagagcatcttttcctatgctaattgaccattcatgtatcttcttttcttaagtacct
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284804 114 +    297174 ggatatgtactggtatctcattgttgtattgattgatctccctgatgactaaacagtagagcatcttttcctatgctaattgaccattcatgtgtcttcttttctgaagcatct
i nomLeu3.chr24_GL397604_1_random I 4013 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207344791 7205 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=546.000000
s hg38.chr1_KI270711v1_random         36726 1 +     42210 a
s panTro4.chr1_GL389150_random       105854 1 +    113811 a
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    207351996 1 - 229507203 a
i gorGor3.chr1                    I 7205 I 37
s nomLeu3.chr24_GL397604_1_random    284918 1 +    297174 a
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=10125.000000
s hg38.chr1_KI270711v1_random         36727 36 +     42210 ttcaagtcttttgagaaattgtttcattgtgctgtt
s panTro4.chr1_GL389150_random       105855 36 +    113811 ttcaagtcttttgagaaattgtttcattgtgctgtt
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284919 36 +    297174 ttcaagtcttttgagaaattgtttcattgtgctgtt
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e gorGor3.chr1                    207351997 37 - 229507203 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=1092.000000
s hg38.chr1_KI270711v1_random         36763 2 +     42210 ta
s panTro4.chr1_GL389150_random       105891 2 +    113811 ta
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    207352034 2 - 229507203 ta
i gorGor3.chr1                    I 37 N 0
s nomLeu3.chr24_GL397604_1_random    284955 2 +    297174 ta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=6728.000000
s hg38.chr1_KI270711v1_random         36765  53 +     42210 tcttattaAACT---------------tatatatatata-catacatata-------------------------------------------------tatatacaaataCACTCTA
s panTro4.chr1_GL389150_random       105893  53 +    113811 tcttattAGACT---------------tatatatatata-catacatata-------------------------------------------------tatataCAAATACACTCTA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    284957 118 +    297174 tcttatcagactgcaatatatatagtatatatatgtatagcatacatatagtatatatgtatagtgtatatatatatatatagtatatatgtgtgtgtgtatacatatatacactcta
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e panPan1.JH650558                 26487523 3931 -  32855946 I
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=546.000000
s hg38.chr1_KI270711v1_random         36818 1 +     42210 A
s panTro4.chr1_GL389150_random       105946 1 +    113811 A
i panTro4.chr1_GL389150_random    C 0 C 0
s panPan1.JH650218                   167500 1 +    451211 a
i panPan1.JH650218                I 24127 N 0
s nomLeu3.chr24_GL397604_1_random    285075 1 +    297174 a
i nomLeu3.chr24_GL397604_1_random C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=24662.000000
s hg38.chr1_KI270711v1_random         36819 124 +     42210 AAAACCCCTTTGTTGGAAATAAATATATCTCTTATATTGTGGTTTCTTTTAATGTTCTCTTAATGTTCCCTGTTTGGAGATAACGATAGATAATCTTCAAAAAGGTGAATATacacacccacac
s panTro4.chr1_GL389150_random       105947 116 +    113811 AAAACCCCTTTGTTGGAAATAAATATATCTCCTATATTGTGGTTTCTTTTAATGTTCTCTTAA---TCCCTGTTTGGAGATAATGATAGATAACCTTCAAAAAGGTGAATATacacacc-----
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    285076 122 +    297174 aaaaaacctttgttggagataaatatatctcctatattgtggcttctatttacgttctcttaatgTTCCCTATTAGGAA--AACGATAGATAATCTTCAAAAAGGTGAATATATATATACACAC
i nomLeu3.chr24_GL397604_1_random C 0 I 790
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=1946.000000
s hg38.chr1_KI270711v1_random         36943 37 +     42210 ccacccacacacacacacacacacacacacacacaca
s panTro4.chr1_GL389150_random       106063 28 +    113811 ---------cacccacacacatacacacacacacacG
i panTro4.chr1_GL389150_random    C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e papAnu2.chr1                    201417020 438 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e nomLeu3.chr24_GL397604_1_random    285198 790 +    297174 I

a score=38.000000
s hg38.chr1_KI270711v1_random         36980 1 +     42210 c
s panTro4.chr1_GL389150_random       106091 1 +    113811 T
i panTro4.chr1_GL389150_random    C 0 C 0
s papAnu2.chr1                    201417458 1 - 220367699 c
i papAnu2.chr1                    I 438 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211914053 808 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I
e nomLeu3.chr24_GL397604_1_random    285198 790 +    297174 I

a score=414278.000000
s hg38.chr1_KI270711v1_random         36981 519 +     42210  
s panTro4.chr1_GL389150_random       106092 520 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    285988 518 +    297174  
i nomLeu3.chr24_GL397604_1_random I 790 C 0
s macFas5.chr1                    211914861 516 + 227556264  
i macFas5.chr1                    I 808 C 0
s papAnu2.chr1                    201417459 512 - 220367699  
i papAnu2.chr1                    C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=1365.000000
s hg38.chr1_KI270711v1_random         37500 1 +     42210 a
s panTro4.chr1_GL389150_random       106612 1 +    113811 a
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286506 1 +    297174 a
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915377 1 + 227556264 a
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201417971 1 - 220367699 a
i papAnu2.chr1                    C 0 C 0
s rhiRox1.KN298737v1                  72908 1 -   1066715 a
i rhiRox1.KN298737v1              N 0 I 101
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=44373.000000
s hg38.chr1_KI270711v1_random         37501 51 +     42210 aaaaagttttcaattgtgccaaatgcttttactgtgtatgacaaggtaatc
s panTro4.chr1_GL389150_random       106613 51 +    113811 aaaaagttttcaattttgccaaatgcttttactgtgtatgacaaggtaatc
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286507 51 +    297174 aaaaagttttcaattttgccaaatgcttttactgtgtatgacaaggcaatc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915378 51 + 227556264 aaaaagttttcaattttgccaaatgcttttactgtgtatgataaggttatc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201417972 51 - 220367699 aaaaagttttcaattttgccaaatgcttttacTGTGTATGATAAGGTTATC
i papAnu2.chr1                    C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e calJac3.chr18                     3668936 2358 +  47448759 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e rhiRox1.KN298737v1                  72909 101 -   1066715 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=42406.000000
s hg38.chr1_KI270711v1_random         37552 44 +     42210 atatggtttttctcttttgccctgataatacataacattacatt----
s panTro4.chr1_GL389150_random       106664 44 +    113811 atatggtttttctcttttgccttgataatatataacattacatt----
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286558 43 +    297174 atacagtttttctcttttgccctgataatatataaaattata-t----
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915429 44 + 227556264 atatggtttttctcttttgccctgataatatataaaattatatt----
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418023 44 - 220367699 ATACGGTTTTTCTCTTTTGCCctgataatatataaaattatatt----
i papAnu2.chr1                    C 0 C 0
s calJac3.chr18                     3671294 48 +  47448759 ATGCAGTCTTTCTCTTTTGTACTGATAATATGGAGGATTATTTGGGGT
i calJac3.chr18                   I 2358 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e rhiRox1.KN298737v1                  72909 101 -   1066715 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=3822.000000
s hg38.chr1_KI270711v1_random         37596 2 +     42210 TT
s panTro4.chr1_GL389150_random       106708 2 +    113811 TT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286601 2 +    297174 tT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915473 2 + 227556264 tt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418067 2 - 220367699 tt
i papAnu2.chr1                    C 0 C 0
s rhiRox1.KN298737v1                  73010 2 -   1066715 tt
i rhiRox1.KN298737v1              I 101 C 0
s calJac3.chr18                     3671342 2 +  47448759 TT
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110524379 4851 - 215897965 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=3368.000000
s hg38.chr1_KI270711v1_random         37598 3 +     42210 CTT
s panTro4.chr1_GL389150_random       106710 3 +    113811 CTT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286603 3 +    297174 CTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915475 2 + 227556264 -tt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418069 2 - 220367699 -tt
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    110529230 2 - 215897965 -cT
i nasLar1.chr1                    I 4851 I 136
s rhiRox1.KN298737v1                  73012 2 -   1066715 -TT
i rhiRox1.KN298737v1              C 0 I 1
s calJac3.chr18                     3671344 3 +  47448759 TCT
i calJac3.chr18                   C 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=83719.000000
s hg38.chr1_KI270711v1_random         37601 66 +     42210 --AAATATAAAAAAGATTTCTTGAATCAAGCTAGGACAGTTTTTTTA----ATTATAAAC--TTTTAACAAATA
s panTro4.chr1_GL389150_random       106713 66 +    113811 --AAATATAAAAAAGATTTCTTGAATCAAGCTAGGACAGttttttta----attataaac--ttttaacaaata
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286606 66 +    297174 --AAATATAAAAAAGATTTCTTGAATCAAGCTAGGACAGTTTTTTTA----ATTATAAAC--TTTTAACAAATA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915477 65 + 227556264 --aaatataaaaAAGATTTCTTGAATCAAGCCAGGACACTTTTTTTA----ATTATAAAA---TTTAACAAATA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418071 65 - 220367699 --aaatataaaaaagatttctTGAATCAAGCCAGGAcacttttttta----attataaaa---tttaacaaata
i papAnu2.chr1                    C 0 C 0
s rhiRox1.KN298737v1                  73015 71 -   1066715 --AAGTAT-AAAAAGATTTATTGAATCAAGCTATGACAGTTTTTAAAAAATATTTTAAACTGttttaacaacta
i rhiRox1.KN298737v1              I 1 N 0
s calJac3.chr18                     3671347 70 +  47448759 GAAAATAT-AAAAAGATTTATTGAATAAAACTATGACAGTTTTAAAA---TATTTTATACTGtttttacaactg
i calJac3.chr18                   C 0 C 0
e nasLar1.chr1                    110529232 136 - 215897965 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=64068.000000
s hg38.chr1_KI270711v1_random         37667 82 +     42210 TGTTGAAATATAACTTACATGCAATTGAGATGCATGAAAGTGTATAATC------ATTAAAG-------------TGTATAATTTTAAGAGTTTGAGCACA
s panTro4.chr1_GL389150_random       106779 82 +    113811 tattgaaatataaCTTACATGCAATTGAGATGCATGAAAGTGTATAATC------ATTAAAG-------------TGTATAATTTTAAGAGTTTGAGCACA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286672 95 +    297174 TAGTGAAATATAACTTACATGCAATTGAGATGCATTAAAGTGTATAATC------ATTAAAGTGTATAATTAAACTGTATAATTTTAAGAGTTTGAGCACA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915542 99 + 227556264 TATCGAAATATAAATTACATGCAATTGAGATTTATTAAA--GTATAATCAAGTATATTAATGTGTATAATTAAAGTGTATAATTTTAAGAGCTTGAGCACA
i macFas5.chr1                    C 0 I 1
s papAnu2.chr1                    201418136 99 - 220367699 tatcgAAATATAAATTACATGCAATTGagatttattaaa--gtataataaagtatattaatGTGTATAattaaagtgtataattttaaGAGCTTGAGCACA
i papAnu2.chr1                    C 0 I 1
s calJac3.chr18                     3671417 68 +  47448759 tactgagatacaatctacacacaa-------------------------------att--tgcacataattaaactttgtgaatttaaaagtttgaacata
i calJac3.chr18                   C 0 N 0
e nasLar1.chr1                    110529232 136 - 215897965 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=-326.000000
s hg38.chr1_KI270711v1_random         37749 1 +     42210 C
s panTro4.chr1_GL389150_random       106861 1 +    113811 C
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286767 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s nasLar1.chr1                    110529368 1 - 215897965 t
i nasLar1.chr1                    I 136 N 0
e papAnu2.chr1                    201418235 1 - 220367699 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e macFas5.chr1                    211915641 1 + 227556264 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=145336.000000
s hg38.chr1_KI270711v1_random         37750 175 +     42210 TATACACGAGTCAAAGAGAAAGGACAGAAAATACTAACGatggctcagcacatgtggtctatcttgctgaatgctctatgtgagtttgagaagagttatttgttagctgttcttagatgtattttgcttaaatatcGACCTGGCTAACATGTGTCATTGATTGTGTGAATTAATT
s panTro4.chr1_GL389150_random       106862 175 +    113811 TATACACGAGTCAAAGAGAAAGGAAAGAAAATACTAAGGatggctcagcacatgtggtctatcttgctgaatgctctatgtgagtttgagaagagttatttgttagctgttgttagatgtattttgcttaaatgtcgacttggctaaCATGTGTCATTGATTGTGTGAATTAATT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286768 175 +    297174 TATACACGAGCCAAAGAGAAAGGACAGAAAACACTAAGtatgtctcagcatatgtggtctatcttggtgaatgttctatgtgagtttaagaagagttatttgttagctgttcttagatgtattttgcttaaatgtcgacttggctaacttgtgtcattgattgtgtGAATTAATT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915642 175 + 227556264 TATACACAAGTCAAAGAGACATGACAGAAAATACTAAGGATTCCTCAGCATatgtgatttatcttggtgaatgttctatgtgagtttgagaagagttatttgttagctgttcttagatgtattttgcttaaatgtcgacttgactagcttgtgtcattgattgtgtgaattaatt
i macFas5.chr1                    I 1 C 0
s papAnu2.chr1                    201418236 175 - 220367699 TATACACAAGTCAAAGAGACATGACAGAAAATACTAAGGATTCCTCAGCATATGTGatttatcttggtgaatgttctatGTGAGTTTGAGAAGAGTTATTTGTTAGCTGTTCTTAGATGTATTTTGCTTAAATGTCGACTTGACTAGCTTGTGTCATTGATTGTGTGAATTAATT
i papAnu2.chr1                    I 1 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=141569.000000
s hg38.chr1_KI270711v1_random         37925 161 +     42210 TTGTTCTAGTGGGCAGTAAAATTACTGTCTGATCACTTTGGACTTATGTGGAC-TGG-TTTATGTTTTATTACAACGGATTCATGGAAAGCCCACAGCATTTCCCAAGACCCTCTAATTTGGCAGGACTCAATCACC-AATCCACCCCTTTGTGAA--TTTGTCAG
s panTro4.chr1_GL389150_random       107037 161 +    113811 TTGTTCTAGTGGGCAGTAAAATTACTGTCTGATCACTTTGGACTTATGTGGAC-TGG-TTTATGTTTTATTACAACGGATTCATGGAAAGCCCACAGCATTTCCCAAGACCCTCTAATTTGGCAGGACTCAATCACC-AATCCACCCCTTTGTGAA--TTTGTCAG
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    286943 163 +    297174 TTGTTCTAGTGGGCAGTAAAATTACTGTCTGATCACATTGGACTTATGTGGACTTGG-TTTATGTTTTATTACAGTGGATTCATGGAAAGCCAAAAGCATTTCCCAAGACTTTCTAATTTGGTAGGACTCAATCACC-AATCCACCCCTTTGTGGA-TTTTGTCAG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915817 156 + 227556264 ttgttctAGTGGGCAGGAAAATTACTGTCTGATCACTTTGGACTTATGTGGACTTGG-TTTATGTTTTATTAAAATGAATGCATGGAAAGCCCACAGCATTTCCCAAGACCCTCTAATTTGG-------CAATCACC-AATCCACCGCTTTGTGGA-TTTTGTCAG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418411 156 - 220367699 TTGTTCTAGTGGGCAGGAAAATTACTGCCTGATCACTTTGGACTTATGTGGACttga-tttatgttttattaaaatgaatgcaTGGAAAGCCCACAGCATTTCCCAAGACCCTCTAATTTGG-------CAATCACC-AATCCACCGCTTTGTGGA-TTTTGTCAG
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47024 165 -    134735 ttattttAGCAGGGTTATTAATTAATGATTGATAACG-TGAACTTATGCAGCCTTAGTTTTGTACTTGATTAGTGCAGATAGGTGGAAAGTTCACCTTGCCTCCAAAGTCCCTCGAACTTGACAGGACTCATCCTCTAAACCCTTCATTCCATGGAACCTTGTTGG
i tarSyr2.KE935255v1              N 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=-1604.000000
s hg38.chr1_KI270711v1_random         38086 2 +     42210 GG-
s panTro4.chr1_GL389150_random       107198 2 +    113811 GG-
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287106 2 +    297174 GA-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915973 2 + 227556264 GG-
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418567 2 - 220367699 GG-
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47189 2 -    134735 CA-
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4590896 2 +   4854373 -GC
i otoGar3.GL873667                N 0 I 92
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=91317.000000
s hg38.chr1_KI270711v1_random         38088 91 +     42210 TTTGCTTTTAGGCTTTAGCA-GGTTGGTCTACAATAGGCCTTATTGAAAAGTGTGACACTTATTCCTAAAGCACATCCATTCTAGTGTCTCA
s panTro4.chr1_GL389150_random       107200 91 +    113811 TTTGCTTTTAGGCTTCAGCA-GGTTGGTCTACAATAGGCCTTATTGAAAAGTGTGACACTTATTCCTAAAGCACATCCATTCTAGTGTCTCA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287108 92 +    297174 TTTGGTTTTAGGCTTTACTAGGGCTGGTCTAGAATAGGCCTTATTGTAAAGCATGACACTTATTCCTAAAGCACAGCCTTTCTAGTGTCTCA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211915975 92 + 227556264 TTTGGTTTTAGGCTTTATTAGGGTTGGTCTAGAATAGGCCTTACTGTAAAGTGTGACACTTATTCCTAAAGCACAGTCATTCTAGTGTCTCA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418569 92 - 220367699 TTTGGTTTTAGGCTTTACTAGGGTTGGTCTAGAATAGGCCTTACTGTGAAGTGTGACACTTATTCCTAAAGCACAGTCATTCTAGTGTCTCA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47191 92 -    134735 TTTGACTTTAGACTTTGTTAAGGTAGATTTAGAGTAGATGTTATTCCAGGGCTTGGTCCTTACTCCTAAGGTACAGACTTTCCAGTGTCTCA
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4590898 92 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=2100.000000
s hg38.chr1_KI270711v1_random         38179 1 +     42210 G
s panTro4.chr1_GL389150_random       107291 1 +    113811 G
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287200 1 +    297174 G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916067 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418661 1 - 220367699 G
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47283 1 -    134735 G
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4590990 1 +   4854373 G
i otoGar3.GL873667                I 92 I 71
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=70608.000000
s hg38.chr1_KI270711v1_random         38180 75 +     42210 TTGGATACCTGGG-TGCTAATGAGGTGTGCATGAGTTCTTCCCACCATGGATGG--------CAGAAACTCCATCATACA---TTCC
s panTro4.chr1_GL389150_random       107292 75 +    113811 TTGGATACCTGGG-TGCTAATGAGGTGTGCATGAGTTCTTCCCACCATGGATGG--------CAGAAACTCCATCATACA---TTCC
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287201 75 +    297174 TTGGATACCTGGA-TGCTAATGAGGTGTAAATGAGTTCTTCCCACCCTGGATGG--------CAGGAACTCCATCATCCA---TTCC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916068 75 + 227556264 TTGGATACCCGGG-TGCTAATGAGGTGTGTGTGAGTTCTTCCCACCCTGGATGG--------CAGAAACTCCATCATCCA---TTCC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418662 75 - 220367699 TTGGATACCCGGG-TGCTAATGAGGTGTGTGTGAGTTCTTCCCACCCTGGATGG--------CAGAAACTCCATCATCCA---TTCC
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47284 87 -    134735 CTGGATACCAGGGATGTTAATAAGGTGAACACAAGGTCTTTTCACTTTGCTGGGACCAGTCCCAGGACTTGAGTTTTCCAAAGTCCT
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4590991 71 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=2051.000000
s hg38.chr1_KI270711v1_random         38255 2 +     42210 CC
s panTro4.chr1_GL389150_random       107367 2 +    113811 CC
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287276 2 +    297174 CC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916143 2 + 227556264 CC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418737 2 - 220367699 CC
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47371 2 -    134735 CA
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591062 2 +   4854373 CA
i otoGar3.GL873667                I 71 I 33
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=29689.000000
s hg38.chr1_KI270711v1_random         38257 33 +     42210 AACCCTCCTCCACCTCAAGTACCTCTGGTCCAA
s panTro4.chr1_GL389150_random       107369 33 +    113811 AACCCTCCTCCACCTCAAGTACCTCCGGTCCAA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287278 33 +    297174 AACCCTTCTCCACCACAAGTACCTCTGGTCCAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916145 33 + 227556264 AACCCTCCTCCACCTCAAGTACCTCTGGTCCAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418739 33 - 220367699 AACCTTCCTCCACCTCAACTACCTCTGATCTAA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47373 33 -    134735 AGTACTGTTCAACCTCTCATATCTCCATACCAC
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591064 33 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=-2465.000000
s hg38.chr1_KI270711v1_random         38290 1 +     42210 -A
s panTro4.chr1_GL389150_random       107402 1 +    113811 -A
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287311 1 +    297174 -A
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916178 1 + 227556264 -A
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418772 1 - 220367699 -A
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47406 1 -    134735 -T
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591097 1 +   4854373 T-
i otoGar3.GL873667                I 33 I 47
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=34458.000000
s hg38.chr1_KI270711v1_random         38291 47 +     42210 CTCAATTTCATAGCAGCCACCCCTCTGTTAAATC-TGTTAGTCTTTTC
s panTro4.chr1_GL389150_random       107403 47 +    113811 CTCAATTTCATAGCAGCCACCCCTCTGTTAAATC-TGTTAGTCTTTTC
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287312 47 +    297174 CTCAACTTTATAGCAGCCACTCCTATGTTAAATC-TGTTAGTCTTTTC
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916179 47 + 227556264 CTCAATTTGACAGCAGCCACCCCTCTGTTAAATC-TGTTTGTCTTTTC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418773 47 - 220367699 CTCAATTTGACAGCAGCCACCCCTCTGTTAAATC-TGTTTGTCTTTTC
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47407 46 -    134735 C-CAACATGGTAGTGATTGCT-GTCTGGCAAGCCACAAGAGGTCTTGT
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591098 47 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=8740.000000
s hg38.chr1_KI270711v1_random         38338 6 +     42210 CTTGTG
s panTro4.chr1_GL389150_random       107450 6 +    113811 CTTGTG
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287359 6 +    297174 CTTGTG
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916226 6 + 227556264 CTTGTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418820 6 - 220367699 CTTGTG
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47453 6 -    134735 GCTGCG
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591145 6 +   4854373 CCTGTG
i otoGar3.GL873667                I 47 I 20
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=12326.000000
s hg38.chr1_KI270711v1_random         38344 20 +     42210 CAGGTAGAGTCCACTCCTTG
s panTro4.chr1_GL389150_random       107456 20 +    113811 CAGGTAGAGTCCACTCCTTG
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287365 20 +    297174 CAGGTACACTCcagtccttg
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916232 20 + 227556264 CAGGTACAGTCCCGTCCTTG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418826 20 - 220367699 CAGGTACAGTACCATCCTTG
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47459 18 -    134735 CTTTGACAGCTCa--ccctg
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591151 20 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=7745.000000
s hg38.chr1_KI270711v1_random         38364 14 +     42210 ATAAGTATGCACAT
s panTro4.chr1_GL389150_random       107476 14 +    113811 ATAAGTATGCACAT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287385 14 +    297174 ataagtatgcacat
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916252 14 + 227556264 ATAAGTGTGCACAT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418846 14 - 220367699 ATAAGTGTGCACAT
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47477 14 -    134735 caacagattcatgg
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591171 10 +   4854373 --ATGGCTTCAT--
i otoGar3.GL873667                I 20 I 33
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=31076.000000
s hg38.chr1_KI270711v1_random         38378 36 +     42210 GGAA--CCCCACATAGACTTTGAGAGCTGCACctttga
s panTro4.chr1_GL389150_random       107490 36 +    113811 GGAA--CCCCACATAGACGTTGAGAGCTGCACctttga
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287399 36 +    297174 ggaa--ccccacatggacttcgagagctgcccctctga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916266 36 + 227556264 GGAA--CCCCTCATGGACTTCGACAGCTGCCCCTCTGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418860 36 - 220367699 GGAA--CCCCTCATGGACTTCGACAGCTGCCCCTCTGA
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47491 38 -    134735 gggattccccacatgggtttctgggtccctctctctgc
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591181 33 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=2396.000000
s hg38.chr1_KI270711v1_random         38414 7 +     42210 tcagctg---
s panTro4.chr1_GL389150_random       107526 7 +    113811 tcagctc---
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287435 7 +    297174 acagctg---
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916302 7 + 227556264 ACAGCTG---
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418896 7 - 220367699 ACAGCTG---
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47529 7 -    134735 ataactc---
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591214 7 +   4854373 ---tctgcat
i otoGar3.GL873667                I 33 I 101
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=6835.000000
s hg38.chr1_KI270711v1_random         38421 7 +     42210 tctcctc
s panTro4.chr1_GL389150_random       107533 7 +    113811 tctcctc
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287442 6 +    297174 tctcct-
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916309 7 + 227556264 TCTCCTC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418903 7 - 220367699 TCTCCTC
i papAnu2.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47536 7 -    134735 cctcctc
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591221 101 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=118268.000000
s hg38.chr1_KI270711v1_random         38428 90 +     42210 actggtgccctgccctgcagattgcagttgcttcagccgtcttgaactctgatctctgccttctcagctcagt-gagctgccctgccctga
s panTro4.chr1_GL389150_random       107540 90 +    113811 attggtgccctgccctgcagattgcagttgcttcagcggtcttgaactctgatctctgccttctcagctcagt-gagctgccctgccctga
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287448 91 +    297174 attggtgccctgccctgcagattgcaatttcttcagtggccttgaactctgatctctgccttctcagctcagtggggatgccctgctctga
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916316 91 + 227556264 ATTGCTGCCCTGCCCCACAGACTGCAGTTGCTTCAGTGGACTTCAACTCTGATCTCTGCCTTCTCACCTCAGTGGGGCTGTCCTGCTCTGA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201418910 91 - 220367699 ATTGCTGCCCTGCCCCACAGACTGCAGTTGCTTCAGTGGACTTGAACTCTGATCTCTGCCTTCTCACCTCAGTGGGGCTGTCCTGCTCTGA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197972811 91 - 215897965 ATTGCTGCCCTGCCCCACAGACTGCAGTTGCTTCAGTGGActggaactctgatctctgccttctcacctcagtggggctgtcctgctctga
i nasLar1.chr1                    N 0 C 0
s tarSyr2.KE935255v1                  47543 89 -    134735 --tgctgtgtctcaccacagactctagctgcttcagctgccccaaactatgatggttgcctcctcagttcacataaatcacaattatctgc
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591221 101 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=-3446.000000
s hg38.chr1_KI270711v1_random         38518 1 +     42210 -g
s panTro4.chr1_GL389150_random       107630 1 +    113811 -g
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287539 1 +    297174 -c
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916407 1 + 227556264 -G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419001 1 - 220367699 -G
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197972902 1 - 215897965 -g
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47632 1 -    134735 -t
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591322 1 +   4854373 t-
i otoGar3.GL873667                I 101 I 88
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=101803.000000
s hg38.chr1_KI270711v1_random         38519 80 +     42210 tggactctagctcac-----tatgcagctgctgagaaattctccc----caaacaactaggaaatcatggggcttccccc-ttaagtttt
s panTro4.chr1_GL389150_random       107631 80 +    113811 tggactctagctcac-----tatgcagctgctgagaaattctccc----caaagaactaggaaatcatggggcttccccc-ttaagtttt
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287540 84 +    297174 aggactctagcccac-----tgtgcagctgctgagaaattctccccagacaaaaaactaggaaatcatggggcttccccc-ttaagtttc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916408 79 + 227556264 TGGACTCCAGCCCAC-----GATGCAGCTGCTGAAAAATTCTCCC----TAAAGAACTAGGAAATCAT--GCCCCCCCCCCTTTAGTTTC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419002 81 - 220367699 TGGACTCCAGCCCAC-----GATGCAGCTGCTGAAAAATTCTCCC----TAAAGAACTAGGAAATCATGGGcccccccccTTTTAGTTTC
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197972903 80 - 215897965 tggactccagcccac-----gatgcagctgctgaaaaattctccc----taaagaactaggaaatcatggggcttccccc-ttaagtttc
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47633 85 -    134735 tggattccagctctctgctgggttcagtt----agaaaatctccctagacagagatctgggcaatcatgaagcttacctt-gtaagtttt
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591323 88 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=1883.000000
s hg38.chr1_KI270711v1_random         38599 1 +     42210 c
s panTro4.chr1_GL389150_random       107711 1 +    113811 c
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287624 1 +    297174 c
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916487 1 + 227556264 C
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419083 1 - 220367699 C
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197972983 1 - 215897965 c
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47718 1 -    134735 c
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591411 1 +   4854373 t
i otoGar3.GL873667                I 88 I 6
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=3683.000000
s hg38.chr1_KI270711v1_random         38600  6 +     42210 -------------------TCTTGG
s panTro4.chr1_GL389150_random       107712  6 +    113811 -------------------TCTTGG
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287625  6 +    297174 -------------------TGTTGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916488  6 + 227556264 -------------------TGTTGT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419084  6 - 220367699 -------------------TGTTGT
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197972984  6 - 215897965 -------------------TGTTGT
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47719 25 -    134735 cttctcttggggattactgtcttgt
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591412  6 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=17805.000000
s hg38.chr1_KI270711v1_random         38606 10 +     42210 ACTGCCTGTT
s panTro4.chr1_GL389150_random       107718 10 +    113811 ACTGCCAGTT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287631 10 +    297174 ACTCCCTGTT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916494 10 + 227556264 ACTGCCTGTT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419090 10 - 220367699 ACTGCCTGTT
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197972990 10 - 215897965 ACTGCCTGTT
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47744 10 -    134735 gctgcctgtt
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591418 10 +   4854373 gccaccagcc
i otoGar3.GL873667                I 6 I 69
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=15349.000000
s hg38.chr1_KI270711v1_random         38616 15 +     42210 GTACACTG-CTGAAAA--------------------
s panTro4.chr1_GL389150_random       107728 15 +    113811 GTACACTG-CTGAAAA--------------------
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287641 16 +    297174 GTCCACTGTCTGAAAA--------------------
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916504 16 + 227556264 GTCCACTGTCTGAAAA--------------------
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419100 16 - 220367699 GTCCACTGTCTGAAAA--------------------
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973000 16 - 215897965 GTCCACTGTCTGAAAA--------------------
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47754 36 -    134735 gttcactgcataaaaacagctccttaatattttgtc
i tarSyr2.KE935255v1              C 0 C 0
e otoGar3.GL873667                  4591428 69 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=5348.000000
s hg38.chr1_KI270711v1_random         38631 2 +     42210 CA
s panTro4.chr1_GL389150_random       107743 2 +    113811 CA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287657 2 +    297174 CA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916520 2 + 227556264 CA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419116 2 - 220367699 CA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973016 2 - 215897965 CA
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47790 2 -    134735 ca
i tarSyr2.KE935255v1              C 0 C 0
s micMur1.scaffold_9132               35231 2 +     69419 ca
i micMur1.scaffold_9132           N 0 I 45
e otoGar3.GL873667                  4591428 69 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=48022.000000
s hg38.chr1_KI270711v1_random         38633 30 +     42210 ATTTTACGTTTGTTTATGGAGG-CAGGGTTA
s panTro4.chr1_GL389150_random       107745 30 +    113811 ATTTTATGTTTGTTTATGGAGG-CAGGGTTA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287659 30 +    297174 ATTTTATGTTTGTTTATGAAGG-CAGGATTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916522 30 + 227556264 ATTTTATGCTTGTTTATGGAGG-CAGGATTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419118 31 - 220367699 ATTTTATGGTTGTTTATGGAGGACAGGATTA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973018 30 - 215897965 ATTTTATGGTTGTTTATGGAGG-CAGGATTA
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47792 30 -    134735 gttttatagttgtttatggagg-gaggatta
i tarSyr2.KE935255v1              C 0 C 0
e micMur1.scaffold_9132               35233 45 +     69419 I
e otoGar3.GL873667                  4591428 69 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=-2470.000000
s hg38.chr1_KI270711v1_random         38663 1 +     42210 -G
s panTro4.chr1_GL389150_random       107775 1 +    113811 -G
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287689 1 +    297174 -G
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916552 1 + 227556264 -G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419149 1 - 220367699 -G
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973048 1 - 215897965 -G
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47822 1 -    134735 -c
i tarSyr2.KE935255v1              C 0 C 0
s otoGar3.GL873667                  4591497 1 +   4854373 c-
i otoGar3.GL873667                I 69 I 33
e micMur1.scaffold_9132               35233 45 +     69419 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=19377.000000
s hg38.chr1_KI270711v1_random         38664 14 +     42210 TCTGATATGATTTA
s panTro4.chr1_GL389150_random       107776 14 +    113811 TCTGATATGATTTA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287690 14 +    297174 TCTGATATGATTTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916553 14 + 227556264 TCTGATATGATTTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419150 14 - 220367699 TCTGATATGATTTA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973049 14 - 215897965 TCTGATATGATTTA
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47823 11 -    134735 tc---taccagtta
i tarSyr2.KE935255v1              C 0 C 0
e micMur1.scaffold_9132               35233 45 +     69419 I
e otoGar3.GL873667                  4591498 33 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=7909.000000
s hg38.chr1_KI270711v1_random         38678 17 +     42210 TTCTA--ACAGACAGAAGC
s panTro4.chr1_GL389150_random       107790 17 +    113811 TTCTA--ACAGACAGAAGC
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287704 17 +    297174 TTCTA--ACAGATAGCAGT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916567 17 + 227556264 TTCTA--GGGGAAACAACC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419164 17 - 220367699 TTCTA--GGAGAAACAACC
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973063 17 - 215897965 TTCTA--ACAGGAACAAGC
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47834 19 -    134735 ctccaccatggttggaaat
i tarSyr2.KE935255v1              C 0 C 0
s micMur1.scaffold_9132               35278 11 +     69419 --------tggtcagaaat
i micMur1.scaffold_9132           I 45 C 0
e otoGar3.GL873667                  4591498 33 +   4854373 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=8567.000000
s hg38.chr1_KI270711v1_random         38695 4 +     42210 AGAA
s panTro4.chr1_GL389150_random       107807 4 +    113811 AGAA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287721 4 +    297174 AGAA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916584 4 + 227556264 AGAA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419181 4 - 220367699 AGAA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973080 4 - 215897965 AGAA
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47853 4 -    134735 ggaa
i tarSyr2.KE935255v1              C 0 C 0
s micMur1.scaffold_9132               35289 4 +     69419 ggaa
i micMur1.scaffold_9132           C 0 C 0
s otoGar3.GL873667                  4591531 4 +   4854373 ttaa
i otoGar3.GL873667                I 33 N 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=17086.000000
s hg38.chr1_KI270711v1_random         38699 10 +     42210 ATCTGTTATA
s panTro4.chr1_GL389150_random       107811 10 +    113811 ATCTGTTATA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287725 10 +    297174 ATCTGTTATA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916588 10 + 227556264 ATCTGTTATA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419185 10 - 220367699 ATCTGTTATA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973084 10 - 215897965 ATCTGTTATA
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47857 10 -    134735 gtTCAGTGTA
i tarSyr2.KE935255v1              C 0 C 0
s micMur1.scaffold_9132               35293 10 +     69419 gtcCAATATA
i micMur1.scaffold_9132           C 0 N 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=15912.000000
s hg38.chr1_KI270711v1_random         38709 12 +     42210 CT-CTTTTAATTA
s panTro4.chr1_GL389150_random       107821 12 +    113811 CT-CTTTTAATTA
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287735 12 +    297174 GT-CTTTTAATTA
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916598 12 + 227556264 CT-CTTTTAATTA
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419195 12 - 220367699 CT-CTTTTAATTA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973094 12 - 215897965 CT-CTTTTAATTA
i nasLar1.chr1                    C 0 C 0
s tarSyr2.KE935255v1                  47867 13 -    134735 GTGCTATTAAATA
i tarSyr2.KE935255v1              C 0 N 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=159205.000000
s hg38.chr1_KI270711v1_random         38721 145 +     42210 CTGTGTCTTTATAATATtatggtagacagaatcctaagatgacccccagtgatctttgctcttatataatcacttcctcctgagtgtagacaaa-gctactgaggagatgtcactcctgtgattgtgctacaatttatggcaaaaa
s panTro4.chr1_GL389150_random       107833 145 +    113811 CTGTGTCTTTATAATATtatggtagacagaatcctaagatgacccccagtgatctttgctcttatataatcacttcttcctgagtgtagacaaa-gctactgaggagatgtcactcctgcaattgtgttacaatttatggcaaaaa
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287747 145 +    297174 CTGTGTCTTTATAGTATtatggtagacagaatcctaagatgagctgcagtgatctttgctcttatataatcacttcttcctgagtgcagacaaa-gccagcgatgaggtatcactcttgtgattgtgttacaatttatggcaaaaa
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916610 137 + 227556264 CTGTGTCTTTATAATATTATGGT----CAaatcctaagatgacccccagtgatctttgttctcatataatcacttcttcctgactgtagacaaaggccagt-----gacatcactcctgtgattgtgttacaatttaatgcaaaaa
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419207 137 - 220367699 CTGTGTCTTTATAATATTATGGT----CGAATCCTAAGATGACCCCCAGTGATCTTTGTTCTCATATAATCACTTCTTCCTGAGTGTAGACAAAGGCCAGT-----GACATCACTCCTGTGATTGTGTTACAATTTAATGCAAAAA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973106 142 - 215897965 CTGTGTCTTTATAATATTATggt----agaatcctaagatgacccccagtgatctttgttctcatataatcacttcttcctgagtgtagacaaaagccagtgatgagatatcactcctgggattgtgttacaatttatggcaaaaa
i nasLar1.chr1                    C 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=4011.000000
s hg38.chr1_KI270711v1_random         38866 2 +     42210 ca
s panTro4.chr1_GL389150_random       107978 2 +    113811 ca
i panTro4.chr1_GL389150_random    C 0 C 0
s gorGor3.chr1                    128113158 2 + 229507203 ca
i gorGor3.chr1                    N 0 N 0
s nomLeu3.chr24_GL397604_1_random    287892 2 +    297174 ca
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916747 2 + 227556264 ca
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419344 2 - 220367699 CA
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973248 2 - 215897965 ca
i nasLar1.chr1                    C 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=250417.000000
s hg38.chr1_KI270711v1_random         38868 207 +     42210 agttaacagatgtaatcgagatcccaaatcggtcaaatttaagatagacagattatctgatgagcttgacctagtgaacgtgagttccttggagggactgaggacttcctggagagatgtgaagtgcaggagggtttccatgcagggcgatcctcctctgctggctggaggaagcatgcagtgggaacatgggaggcctctacgagc
s panTro4.chr1_GL389150_random       107980 207 +    113811 agttaacagatgtaatcgagatcccaaatcggtcaaatttaagatagacagattatctgatgagcttgacctagtgaaggtgagttccttggagggaccgaggacttcctggagagatgtgaagtgcaggagcgtttccatgcagggcgatcctcctctgctggctggaggaagcatgcagtgggaacatgggaggcctctaggagc
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    287894 206 +    297174 -agtagcagatgtaattgagatcccaaatcagtcgaatctaagatagagagattatcttatgagcttgaccaaatgaaggtgagttccttggagggactgaggtcttcctggagagatgtgaagtgcaggagggtttccatgcaggatgattctcctctgctggatggagaaagcatgcagtgggaacatgggaggcctctaggagc
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916749 207 + 227556264 agttagcagatataatcgagatcacagatcagtcaaatttaatatagagagatgatcttatgagcttgacctaatgaaggtgagttccttggagggactgaggtcttcctggagagatgtgaagtgcaggagggtttccattcagggcatgtctcctcttctggctggaggaagcatgtattgggaacatgggaggcctccaggagc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419346 207 - 220367699 AGTTAGCAGATATAATCGAGATCTCAGATCAGTCAAATTTAATATAGAGAGATGATCTTATGAGCTTGACCGAATGAAGGTGAGTTCCTTGGAGGGACTGAGGTCTTCCTGGAGAGATGTGAAGTGCAGGAGGGTTTCCATGCAGGGCGGTTCTCCTCTTCTGGCTGGAGGACGCATATATTGGGAACATGGGAGGCCTCCAGGAGC
i papAnu2.chr1                    C 0 C 0
s nasLar1.chr1                    197973250 207 - 215897965 agttagcagatgtaatcaagatctcagatcagtcaaacttaatacagagagatgatcttatgagcttgacctaacgaaggtgagttccttggagggactgaggtcttcccagagagatgtgaagtgcaggagggtttccatgcagggcgattctcctcttctggctggaggaagcatgtattgggaacatgggaggcctccaggagc
i nasLar1.chr1                    C 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I
e chlSab2.chr20_KE148050v1_random   1033076 6493 -   1280666 I

a score=206165.000000
s hg38.chr1_KI270711v1_random         39075 118 +     42210 agcgagaggcccctggctgacagccagcaagaaaacagagatctcagtcctacagtcacaaggaactgaactcagctgacaacctgaggaaacttgagaggaagttcttccccagaac
s panTro4.chr1_GL389150_random       108187 118 +    113811 agcgagaggcccctggctgacagccagcaagaaaacagagatctcactcctacagtcacaaggaactgaactcagctgacaacctgaggaaacttgagaggaagttcttccccagaac
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    288100 118 +    297174 agcgagaggcccccagctgacagccagcaagaaaacagagatctcagtcctgcagtcacaaggaactgaactcagctgacaacctgaggaaatttgaaaggaagttcttccccagaac
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211916956 118 + 227556264 agcgagaggcccctggctgacagtcagcaagaaaatagagatctcagttctacagtcacaaggaactgaactcagctgacaacctgaggaaactagacagcaaattcttccccagaaa
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419553 118 - 220367699 AGCAAGAGGCCCCTGGCTGACAGTCAGCAAGAAAATAGAGATCTCAGTTCTACAGTCACAAGGAACTGAACTCAGCTGACAACCTGAGGAAACTAGAGAGCAAGTTCTTCCCCAGAAA
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039569 115 -   1280666 agcgagaagcccctggctgacagccagcaagaaaacagagatctcagtcctatagtcacaaggaactgaattcagctgaca---tgaagaaacttgagaggaagttcttcccgagaac
i chlSab2.chr20_KE148050v1_random I 6493 C 0
s nasLar1.chr1                    197973457 118 - 215897965 agcgagaggcccctggctgagagtcagcaagaaaacagagatctcagttctacagtcacaaggaactgaactcagctgacaacctgaggaaactagagagcaagttcttccccagaaa
i nasLar1.chr1                    C 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I

a score=245173.000000
s hg38.chr1_KI270711v1_random         39193 150 +     42210 ctccagaaagaaacccagcctaatttcagcctgtgaggccctgagaagaagacccagagaatccaggcctgaacttctgatctgtggacactgcaagaaaataaatcattcttattttatgccgct-aatgcttgcagtaatttagtatgc
s panTro4.chr1_GL389150_random       108305 150 +    113811 ctccagaaagaaacccagcctaatttcagcctgtgaggccctgagaagaagacccagtgaatccaggcctgaacttctgatctgtggacactgcaagaaaataaatcattcttattttacgccgct-aatgcttgcagtaatttagtatgc
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    288218 150 +    297174 ttccagaaagaaacctagcctaatttcagcctgtgaggccctgagaagaagacccaggtaatccaggcctgaacttctgatctgtggacactgcaagaaagtaaatcattgttattttaagcctct-aaagcttgcagtaatttagtatgc
i nomLeu3.chr24_GL397604_1_random C 0 I 1421
s macFas5.chr1                    211917074 151 + 227556264 ctccagaaagaaacccagcctaatttcagcctgtgaggccctgagaagaagacccagctaatccaggcctcaacttctcatctgtggatactgccagaaaataaatcagtcttattttaagcctctaaaagctagcagtaatttagcatgc
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419671 151 - 220367699 CTCCAGAAAGAAACCCAGCCTAATTTCAGCCTGGGAGGCCCTGAGAAGAAGACCCAGCTAATCCAGGCCTCAACTTCTCATCTGTGGATACTGCCAGAAAATAAATCAGTCTTATTTTAAGCCTCTAAAAGCTAGCACTAATTTAgcatgc
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039684 147 -   1280666 ccccagaaagaaatccagtctaatttcagcctgtgaggccctg---agaagacccagctaacccaggcctgaacttctgatctgtagacactgcaagaaagtaaactgctgttattttaaggctct-aaagcttgcagtaatttagtatgc
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chrUn_JMHX01196331v1            2 151 +       305 CTCCAGAAAGAAACCcagcctaatttcagcctgtgaggccctgagaagaagacccagctaatccaggcctcaacttctcatctgtggatactgcaagaaaataaatcattcttattttaagcctctaaaagttaccagtaatttagcatgc
i nasLar1.chrUn_JMHX01196331v1    n 0 C 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I

a score=271908.000000
s hg38.chr1_KI270711v1_random         39343 151 +     42210 agcaatagaaaattaatacaAATAAAATGGAGAAGGCTTTGGAGTGGGGACAAGAAGGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTATGGTTGAATTGGGTCTACCGTTCCTCATCTAATTAGCTATGGTCT
s panTro4.chr1_GL389150_random       108455 151 +    113811 agcaatagaaaattaatacaAATAAAATGGAGAAGGCTTTGGAGTGGGGACAAGAAGGAAACGGTGGTAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTATGGTTGAATTGGGTCTACCATTCCTCATCTAATCAGCTATGGTCT
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    289789 151 +    297174 aGCAATAGAAAATTAATACAAGTAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAATGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGACTGTATGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTATGGTCT
i nomLeu3.chr24_GL397604_1_random I 1421 C 0
s macFas5.chr1                    211917225 151 + 227556264 agcaatagaaaattaatacaAACAAAATGGAGAAGACGTTGGAGTGGGGACAAAAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTACGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTTTGGTCT
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419822 151 - 220367699 agcaatagaaaattaatacaaacaAAATGGAGAAGACGATGGAGTGGGGACAAAAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTACGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTTTGGTCT
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039831 150 -   1280666 agcaatagaaaattaatacaAATAAAATGGAGAAGACTTTGGAGTGGGGACAAGAATGAAAC-GCGGGAGAGGGATGCCTGTATGTTGATACGGTTGATGCCTGTATGGCTGAATTGGGTCTACCATTCCTCATCTCATTAGCTATGGTCT
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chrUn_JMHX01196331v1          153 151 +       305 agcaatagaaaattaatacaAACAAAATGGAGAAGACGTTGGAGTGGGGACCAAAATGAAACGGTGGGAGAGGGATGCCTGTATGCTGATATGGTTGATGCCTGTACGGTTGAATTGGGTCTACCATTCCTCATCTAATTAGCTTTGGTCT
i nasLar1.chrUn_JMHX01196331v1    C 0 n 0
e ponAbe2.chr1                    107379720 9026 + 229942017 I

a score=926132.000000
s hg38.chr1_KI270711v1_random         39494 767 +     42210  
s panTro4.chr1_GL389150_random       108606 767 +    113811  
i panTro4.chr1_GL389150_random    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    289940 765 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211917376 767 + 227556264  
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201419973 767 - 220367699  
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1039981 762 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
e nasLar1.chrUn_JMHX01196331v1          304   0 +       305 I
e ponAbe2.chr1                    107379720 9026 + 229942017 I

a score=443813.000000
s hg38.chr1_KI270711v1_random         40261 280 +     42210 acacttgtggtagcattgaaggcttcactcttcctcaagggatccaatctcccctcagtcaagaagctccaggtatctgaactggatgccaggtcataaattcccactatggtgactccatcaggtctctgtcctcagaactagagattttctaagtgtaacgtaagttgatttcttagtagatgtcccatccattacattcccagacacctcacaatgattcgaatgattagtaaccaccacatatccctgcCTCTCAGGGAAATCCCTcccgccttgt
s panTro4.chr1_GL389150_random       109373 280 +    113811 acactggtggcagcattgaaggcttcactcttcctcaagggatccaatcttccctcactcaagaagctccaggtatctgaactggatgccaggtcataaattcccactatggtgactccatcgggtctctgtcctcagaactagagcttttctaagtgtaacgtaagttgatttcttagtagatttcccacccattacattcccagacacctcacaatcattcgaatgattagtaaccaccacatatccctgcCTCTCAGGGAAATCCCTcccgccttgt
i panTro4.chr1_GL389150_random    C 0 C 0
s ponAbe2.chr1                    107388746 270 + 229942017 aCACTTGTGGCAGCAATGAAGGCTTCACTCTTCCCCAAGGGATCCAATCTCCCCTCAGTCAAGAAGCTCCAGGTATCTGAACTGGATGCCAGGTCATAAATTCCCACTAtggtgaccccaacaggtctctatcctcagaactagagcttttctaattattacataagttgacctcttagtagatttcccattcattaca-tcccagacacctcac---------aatggttagtaaccaccataggtccctgcCTCTCAAGGAAATCCCTcccgccttgt
i ponAbe2.chr1                    I 9026 C 0
s nomLeu3.chr24_GL397604_1_random    290705 257 +    297174 acacttgtggcagcattgaaggcttcactcttcctcaagggatccaatctcccctccgtcaagaagctccaggtatctgaactggatgccaggtcataaattgccactat-------------ggtctctgtcctcagaactagagcttttctaattattacatacattgatttctt-gtagatttcccatccattacattcccagatacctcac---------gatgattagcaaccaccacaggtccctgcCTCTCAAGGAAATCCCTCCCACCTTCT
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211918143 270 + 227556264 acacttgcggcaacattgaaggcttcactcttcctcaagggatcc-atctcccctcagtcaagaagctccagggatctcaactggatgccaggtcataaattcccactatggtgactgcatcaggtctctgtcctcagaactacagcttttctaattattacaaaagttcatttcttactagatttcccatccattacattcccagacacctcac---------aatgattagtaaccaccacataaccctacctctcaaagaaatccctcccgccttgt
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201420740 270 - 220367699 ACACTTGCAGCAACATTGAAGGCTTCACTCTTCCTCAAGGGATCC-ATCTCCCATCAGTCAAGAAGCTCCAGGTATCTCAACTGGATGCCAGGTCACAAATTCCCACTATGGTGACTGCATCAGGTCTCTGTCCTCAGAACTAGAGCTTTTCTAATTATTACAAAAGTTCATTTCTTACTATATTTCCCATCCATTACATTCCCAGACACCTCAC---------AATGATTAGTAAGCACCACATAACCCTACCTCTCAAGGAAATCCCTCCCGCCTTGT
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1040743 271 -   1280666 acacttgtggcagcattgaaggcttcactcttccccaagggatccaatctccccccagtcaagaagctccaggtatctgaactggatgccaggtcataaattcccaccatggtgactccaacaggtctctgtcctcagaactagagcttttctaattattacataagttgatttcttagtagatttcccatccattacactcccagacacctcac---------aatgattagttaccaccacatgtccctgcCTCTCAAGGAAATCCCTCCTGccttgt
i chlSab2.chr20_KE148050v1_random C 0 C 0
e nasLar1.chrUn_JMHX01196331v1          304   0 +       305 I

a score=3723550.000000
s hg38.chr1_KI270711v1_random         40541 1666 +     42210  
s panTro4.chr1_GL389150_random       109653 1667 +    113811  
i panTro4.chr1_GL389150_random    C 0 N 0
s ponAbe2.chr1                    107389016 1654 + 229942017  
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24_GL397604_1_random    290962 1662 +    297174  
i nomLeu3.chr24_GL397604_1_random C 0 C 0
s macFas5.chr1                    211918413 1666 + 227556264  
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    201421010 1663 - 220367699  
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20_KE148050v1_random   1041014 1647 -   1280666  
i chlSab2.chr20_KE148050v1_random C 0 C 0
s nasLar1.chr1                    197973575 1630 - 215897965  
i nasLar1.chr1                    C 0 C 0

a score=6111.000000
s hg38.chr1_KI270711v1_random         42207 3 +     42210 GCT
s ponAbe2.chr1                    107390670 3 + 229942017 GCT
i ponAbe2.chr1                    C 0 N 0
s nomLeu3.chr24_GL397604_1_random    292624 3 +    297174 GCT
i nomLeu3.chr24_GL397604_1_random C 0 N 0
s macFas5.chr1                    211920079 3 + 227556264 GCT
i macFas5.chr1                    C 0 N 0
s papAnu2.chr1                    201422673 3 - 220367699 GCT
i papAnu2.chr1                    C 0 N 0
s chlSab2.chr20_KE148050v1_random   1042661 3 -   1280666 GCT
i chlSab2.chr20_KE148050v1_random C 0 N 0
s nasLar1.chr1                    197975205 3 - 215897965 GCT
i nasLar1.chr1                    C 0 N 0

