##maf version=1 scoring=roast.v3.3
a score=1248292.000000
s hg38.chr1_KI270714v1_random         0 1059 +     41717 CTaaacac-aaaaagtttagctgggcatgatggtgcatgcctgtaatctgagctacttgggaggcggagacaggagaatcgcttgagtacctgggaggcagaggttgcagtgagctgagatcacacaattgcactccagactgggcaacgagagtgaaactccatccc---cccaaaaacaa-ataaataaaaataaaagaatatcaagcagtcaaagaagcaggaaaacatgacacatactgaagaatctaataatctggttgaaattgacacacacgttggaaatagaagaaaaggacgttaccgcaattagtataattgtattttaattaaatggagaggttgaagatttttt-aaatatcaaattctgtagataaaaactatgatttacagtgtgaaatggaagaaggcactggattaaatattgcagaagagaagattattaaactagaaggaatagaagttgaaactaacataaatgaaacacacattaacaaatgacttgaaaacacataaagaccatcagcatcaaaactttaaacaccctagtatagggctaaatggaatccctgaagggcaggtagtggagaagagagacaaagatatttaaaacatactggatgaaagatttagaagctccatggaaatcataaacttcaaatattacagaaatatgattatcccaagaacaagaaacatgcagaaaacttcaacaaggaacaccttaatcgaatccatcaaaaccagtgataaaaaggaaatcctaaaagtaataaaagggaaaagaacatgttacatacagagcactaaatataaggatggcataagatttctcataggaaactttacaaacaagaagtttgcaataaagtacttaaaaaaa-gaaaaactgtcacctacaagtctacacctggccaaattatctttcaaaaataaacatgagaaaaaatatttttgaacagaaaacaaaatgatctcaatttgcagatggtgtgatcctatgtatagaaaatcccaaacaatacatacaaaggcaaacacacatacatgcacacagacacca
s panTro4.chr1                114671176 1039 - 228333871 ctaaatac-aaaaaaattagccaggcatgatggtgcatgcctgtaatctgagctacttgggaggctgagacaggagaatcgcttgtgtacctgggaggtggaggttgcagtgagctgagattacaccattgcactccagcctgggcaacgagagcaaaactctatccc---cccgcaaaaaa-aaaaaaataaataaaagaatatcaagcagccaaagaagcaggaaaacatgacacataatgaagaatctaataatctagttgaaattgacagacatgttggaaatagaagaaaaggacattagagcagttagtataattgtattttaattaaatggggaggttgaaggtttttt-aaatatcaaattctgtagataaaaagtatgatttacagtctgaaatggaagaaggcagtggattaaacattgcagaagagaagattattgaactagaaggaatagaagttgaaactaacataaatgaaacacacagtaacaaatgacttgaaaacataaaaagaccatcggcatcaaaactttaaaccccccagtatagggctaaatggaatccctgaagggcgtgtagtggagaagagagacaaagatatttaaaacatactggatgaaagatttagaagctccatggaaaccataaacttcaaatattacagaaatatgattattctaagaacaagaaacatgaagaaaacttcaccaaggaatgccttaatcaaatccatcaaaaccagtgataaaaaggaaatcctaaaaggaataaaaagggaaagaacatgttacatacagagcactaaatataaggatggcataagatttctcata----------caaacaagaagtttgcaataaagaacttaa------gaaaaactgtcacctacaattctacacctggccaaattatcttttaaaaataaacatgagaaaaaatatttttgaacagaaaacaaaatgatctcaatttgcagatggtgtgatcctatgcatagaaaatcccaaataatacctacagaTGCAAacacacatacatgcgcaca-----ca
i panTro4.chr1                N 0 C 0
s ponAbe2.chr1                122597582 1047 - 229942017 ctaaatac-aaaaaaattagccaggcatggtggtgcatgcctgtaatctgagctacttgggagtctgagacaggagaatcgctagtgtatctgggaggcggaggttgcagtgagctgagatcacaccattgcactccagcctgggcaatgagagcaaaactccattccccacccaaaaaaaataaaaataaaaataaaagaatatcaagcagccaaagaagcaggaaaacatgacatataatgaagaatctaataatctagttgaaattgacacacatgttggaaatagaagaaaaggacattagagcagttagtataattgtattttaattaaatggggaggttgaagatttttt-aaatatcaaaatctatagataaaaactatgatttacagtctgaaatggaagaaggcagtggattaaacagtgcagaaaagaagattattgaactagaaggaatagcagttgaaactaacataaatgaaacacacagtaacaaatgacttgaaaacataaaaagaccatcagcatcaaaactttaaaccccctagtatagggctaaatggaatccctgaagggcgtgtagtggagaagagagacaaagatatttaaaatatactggatgaaagatttagaagctccatggaaaccataaacttcaaatattacagaaatatgattattctaagaacaagaaacatgaagaaaacttcaccaaggaacaccttaatcaaatccatcaaaaccagtgataaaaaggaaatcctaaaagaaataa---gggaaagaacatgttacatacagagcactaaatataaggatggcataagatttctcata----------ca---aagaagtttgcaataaagtacttaaaaagg-gaaaaactgtcacctacaattctacacctggccaaattatcttttaaaaataaacatgagaaaaagtatttttgaacagaaaacaaaatgatctcaatttgcagatggtgtgatcctatgcatagaaaatcccaaataatacatacaaaTGTAAacacacatagatgcacacagagacca
i ponAbe2.chr1                N 0 C 0
s nomLeu3.chr12                57112330 1043 + 109391073 ctaaatacaaaaaaaattagccaggcatggtggtgcatgcctgtaacctgagctacttggaaggctgagacaggagaatcgcttgtgtacctgggaggcagaagttgcagtgagctgagatcacaccattgcactccagcctgggcaatgagagcaaaactccatccccc-ccccaagaaaa-ataaataaaaataaaagaatatcaagcagccaaagaagcaggaaaacatgacacataataaagaatctaataatctagttgaaa-tgacacacatgttggaaatagaagaaaaggacattagagcatttactataattgtattttaattaaatggggaggttga---tttttt-aaatatcaaattctgtacataaaaactatgatttacagtctgaaatggaagaaggcagtggattaaacattgcagaagagaagattattgaactagaaggaatagaagttgaaactaacataaatgaaacacacagtaacaaatgacttgaaaacataaaaagaccatcagcatcaaaactttaaaccccctagtatagggctaaatggaatccctgaagggcatgtagtggagaagagagacaaagatatttaaaacatactggatgaaagatttag-agctctatggaaaccataaagttcaaatattacagaaacatgattattctaagaacaagaaacataaagaaaacttcaccaaggaacaccttaatcaaatccatcaaaaccagtgataaggaggaaatcctaaaaggaataaaaggggaaagaacatgttacatacagagcactaaatataaggatggcataagatttctcata----------caaacaagaagtttgcaataaagtacttaaaaaga-gaaaaactgtcacctacaattctacacctggccaaattgtcgttcaaaaataaacatgagaaaaaatatttttgaacagaaaacaaaatgatttcaatttgcagatggtgtgatcctatgtatagaaaatcccaaataa----tacaaatgcaaacacacatacatgcacacagagacca
i nomLeu3.chr12               N 0 C 0
s papAnu2.chr1                121866966 1049 + 220367699 ctaaatac-aaagaaattagctgggcatggtggcgtatgcctgtaatctga-cCAATTGggacgctgagacaggagaatcgcttgtgtacctgggagacagaggttgcagtgagctgagatcacaccattgcacttcagcctgggcaacaagagtgaaactccatc-----cccaaaaataa-ataaat-aaaataaaagaatatcaagcagccaaagaaacaggaaaacatgacACACAATGAAGAATCTAATAATCTACTTGAAATTGACACACATGTTGGAAATAGAAGAGAAGGACATTAGAACAGTTAgtataattgtattttaattaaatggagagattgaagattttttaaaatatcaaattctgTAGATAAAATCTATGATTTACAGTCTGAAATGGAAGAAAGCACTGGATTAAACATTGCAGAAGAGAAGATTATTGAACTAGAGGGAATAGAAGTTGAAACTAACATAAATGAAACACACAGTAACAAATGACTTGAAAAC-TAAAAGGACCATCAGCATAAAAACTTTAAACACCCTAGTATAGGGCTAAATGGAATCCCCGAAGGGCGTGTAGTGGAGAAGAGAGACAAAGATACTTAAAACATACTGGATGAAAGATTTAGAAGCTCCATGGAAAGCATAAACTTCAAATATTACAGAAACATGATTATTCTAAgaacaagaaacatgaagaaaacttcaCCAAGGAACACCTTAATCAAATCCATCAAAATCAGtgatcaaaaggaa-----aaaagtagtaAAAGGGGAAAGAACATGTTACATACAGAGCACTAAATATAAGGATGGCACAAGATTTCTCATAGGAAACTTTACAAACAAGAAGTTGGCAATAaagtacttaaaaaaagaaaaaactattgcCTACAATTCTACCCCTGgccaaattatctttcaaaaataaacatgagaaaaaatatttttgaacagaaaacaaaatgatctcAATTTGCAGATGGTGTGattctatatatagaaaatcccaaataatacatacaaatgcaaacacacatacatgcacacagagac--
i papAnu2.chr1                N 0 C 0
s chlSab2.chr20                13353693 1031 + 130588469 ctaaatac-aaaaaaattagctgggcatggtggcgtatgcctgtaatctga-ccaattgggacgctgagacagcagaattgcttgtgtacctgggagacagaggttgcagtgagctgagatcacaccgttgcactccagcgtggtcaatgagagtgaaattccatctt---ccaaagaataa-ataaataaaaataaaagaatatcaagcagccaaagaagcaggaaaacatgacacataatgaagaacctaataatccagttgaaattgacacacatgttggaaatagaagaaaaggacattagaacagttagtataattgtattttaattaaatggagaggttgaagatttttt-aaatatcaaattctacagataaaaac--tgatttacagtctgaaatggaagaaggcactggactaaacattgcagaagagaagattattgaactggaaggaatacaagttgaaactaacataaatgaaacacacagtaacaaatgacttgaaaac-ttaaaggaccatcagcataaaaactttaaacaccctagtatagggctaaatggaatccccgaagggcgtgtagtggagaagagagacaaagatatttaaaacatactggatgaaagatttagaagctccatggaaacaataaacttcaaatattacagaaatatgattattctaagaacaagaaacatgaagaaaacttcaccaaggaacaccttaatcaaatccatcaaaaccagtgataaggaggaaattctaaaagtaataaaaggggaaagaacatgttacatacagagcactaaatataaggatggcatgagatttttcataggaaactttacgaacaagaggtttgcaataaagtacttaa------gaaaaactgtcacctacaattctacacctggccaaattatctttcaaaaatacacatgagaaaaagtatttttgaacagaaaacaaaatgatctcaatttgcagatggtgtgtttatatatatagaaaatcccaaataatacatacaaatgcaaacacaca-------------------
i chlSab2.chr20               N 0 C 0

a score=17335.000000
s hg38.chr1_KI270714v1_random      1059 25 +     41717 gacacacacacacacacacacacac
s panTro4.chr1                114672215 22 - 228333871 gaggc---cagacacacacacacac
i panTro4.chr1                C 0 C 0
s gorGor3.chr1                207385422 25 - 229507203 gacacacacacacacacacacacac
i gorGor3.chr1                N 0 N 0
s ponAbe2.chr1                122598629 25 - 229942017 gacacacacacacacacacacacac
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57113373 21 + 109391073 gacacacacaaacacacacac----
i nomLeu3.chr12               C 0 C 0
s papAnu2.chr1                121868015 11 + 220367699 ----------cacacacacac----
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13354724 11 + 130588469 ----------cacacacacac----
i chlSab2.chr20               C 0 C 0

a score=582938.000000
s hg38.chr1_KI270714v1_random      1084 467 +     41717 acacacacacacacacactatcagagttaataagtgaattcagcaaactttcagcaaacaatccattgtgatggcaatgagctatctgagaagtaaactgacacaatgatttcatttataatagcacctgtaaggataatatgcctgggaataaatttgttcaagaaggtgcagtacttgtacacagacaactacagaacattgctcgaggagattcaggaagacctaaatcaatggacagacatcttgtgtccatgggttggaagttgtaacatggttaagat-aaaaatacaactcaaagcaacccacagattcaatacaatcctatcaaaaagtggccttttttacaggaatgcctaacaagaacttcatattcctaaaaaatagt--gtgtccccccaaaacaaaagcaatcttgaaatgcaagaagaaACATTTTCTATTCCAAAGGTCTTTAACTGCTCTAAGC
s panTro4.chr1                114672237 467 - 228333871 acactcacatacacacactactagagttaataagcaaattcagcaaactttcagcaaacaatcagttgtgttagcaatgaacaatctgagaagaaaattggcacaatgatttcatttataatagcaccggtaagaataatatgcctgggaataaatttgttcaagaaggtgcagtacttgtacacagacaactacagaacattgctcgaggagattcaggaagacctaaatcaatggacagacatcttgtgtccatgggttggaagctgtaacatggttaagac-aaaaatacaactcaaagcaacccacagattcaatacaatcctatcaaaaagtggccttttttacaggaatgcctgagaagaacttcatattcctaaaaaatagt--gtgtccccccaaaacaaaagcaatcttgaaatgcaagaaggaacaTTTTCTATTCCAAAGGTCTTTAACTGCTCTAAGC
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122598654 451 - 229942017 ----------------actactagagttaataagtgaattcagcaaacttccagcaaacaatcatttgtgttagcaatgaacaatctgagaagaaaattgacacaatgatttcatttataatagcacctgtaagaataatatgcctgggaataaatttgttcaagaaggtgcagtacttgtacgcagacaactacagaacattgctcgaggagattcaggaagacctaaatcaatggacagacatcttgtgtccatgggttggaagttgtaacatggttaagat-aaaaatacaactcaaagcaatccacagattcaatacagtcctatcaaaaagtggccttttttacaggaatgcccaagaagaacttcatattcctaaaaaatagt--gtgtccccccaaaacaaaagcaatcttgaaatgcaagaaggaacaTTCTCTATTCCAAAGGTCTTTAACTGCTCTAAGC
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57113394 452 + 109391073 ------------------tactagagttaataagcgaattcagcaaacttccagcaaacaatcacttgtgttagcaatgaacaatctgagaagaaaattgacacaatgatttcatttataatagcatctgtaagaataatatgcctgggaataaatttgttcaagaaggtgcagtacttgtacacagacaactacagaacattgttcgaggagattaaggaagacctaaatcaatggaaagacatcttgtgtccatgggttggaagttgtaacatggttaagataaaaaataccactcaaagcaatccacagattcaattcagtcctatcaaaaagtggccttttttacaggaatgcttaagaagaacttcatattcctaaaaaatagcaggtgtccccccaaaacaaaagcaatcttgaaatgtaagaaggaacaTTCTCTATTCCAAAGGtctttaactgctctcagc
i nomLeu3.chr12               C 0 C 0
s papAnu2.chr1                121868026 469 + 220367699 acatacacacacacacactactagAGTTAATAAGTGAATTCAGCAAACTTTCAGCAAGCAATCAGATGTgttagcaatgaacaatctgagaagaaaattgacacaatgatttcatttataatagcacTTGTAAGAATAACATGCCTGGGAATAAATTTGTTCGAGAAGGTGCAGTACTTGTACACAGACAACTACAGAACATTGCTTGAGGAGATTAAGGAAGACCTAAATCAATGGAAAGACATCTtgtgttcatgggttggaagTTGTAACATGGTGAAGAT-AAAAATACAActcaaagcaatccacagattcaatacAGTCCTATCAAAAAGTGGCCTTTTTTACAGAAATGCCTAAGAAGAACTTCATATTCCTAAAAAATAGCAAGTGTCCCCCCAAAACAAAAGCAATCTTGAAATGCAAGGAAGAACATTCTCTATTCCAAAGGTCTTTAACTGCTCTCAGC
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13354735 468 + 130588469 acagacagacacacacactactagagttaataagcgaattcagcaaactttcagcaagcaatcagttgtgttagcaatgaacaatctgagaagaaaattgacacaatgatttcatttataatagcacctgtaagaataacatgcctgggaataaatttgttcgagaaggtgcagtacttgtacacagacaactacagaacattgctcgaggagattaaggaagacctaaatcagtggaaagacatcttatgtccatgggttggaagttgtaacatggtgaagat-aaaaatacaactcaaagcaat-cacagattcaatacagtcctatcaaaaagtggccttttttacaggaatggctaagaagaactccatattcctaaaaaatagcaagtgtccccccaaaacaaaagcaatcttgaaatgcaaggaggaacaTTCTCTATTCCAAAGGTCTTTAACTGCTCTCAGC
i chlSab2.chr20               C 0 C 0

a score=487396.000000
s hg38.chr1_KI270714v1_random      1551 290 +     41717 AGTACTTGGTAGTCTTCAATATATAGGCTTTCACAtctcttttgttcttcttttgtttctgcacaggatctcactctttcacccaggctggagtacagtggcacaatcacagctcactgcagcatggaattctcaggcctatgacatcctagggcctcatccactgatt-cctgggactacaggctcacaccactaaacccgcataatttttctgatttttcagtagagatgagggctcactatgttgcctaggctagtttcaagcttctgagatcaagcaaccctcctgc
s panTro4.chr1                114672704 285 - 228333871 AGTACTTGGTAGTCTTCAATATATAGGCTTTCACATCTCtttttttcttcttttgtttctgcacaggatctc----tttcacccaggctggagtacagtggcacaatcacagctgactgcagcatggaattctcaggcctatgacatcctagggcctcatccactgatt-cctgggactacaggctcacaccaccaaacccggataatttttctgatttt-cagtagagatgagggctcactatgttgcctaggctagtttcaagcttctgagatcaagcaaccctcctgc
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599105 289 - 229942017 AGTACTTGGTAGTCTTCAATATATAGGCTTTCACATCtttttttttcttcttttgtttctacacaggatctcactctttcactcaggctggagtacagtggcactatcacagctcattgcagcatggaattctcaggcctatgacatcctagggcctcatccactgatt-ccggggactacaggccaacaccaccacacccggataatttttctgacttt-cagtagagatgagggctcactatgttgtctaggctagtttcaagcttctgagctcaagcaactctcctgc
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57113846 288 + 109391073 aatacttggtagtcttcaatatacaggctttcacatc--tttttttctacctttgtttctagacacgatctcactctttcactcaggctggagtacagtggcatgatcataactcactgcagcatggaattctcaggactatgacatcctagggcctcatccactgagtatctgggactacaggctcgcaccaccacacccggataatttttctgatttt-cagtagacatgagttctcactatgttgcctaggctagtttcaagcttctgagctcaagcgactctcctgc
i nomLeu3.chr12               C 0 C 0
s papAnu2.chr1                121868495 287 + 220367699 AATACTTGGTAGTTTTCAATATATAGGCTTTcacatc---ttttttcttcctttgtttctagACAcaatctcactctttcacccaggctggagtacagtcacacgaacacagctcactgcagcatgaAATTCTCAGATCTATGACATCCTAGGGCCTCATCCactgagtacctaggactacaggctcacaccaccacacctggataatttttctgatttt-cagtagagatgaggtctcactatgttgcctaggctagtttCAAGcctctgagctcaagcgaccctcctgc
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13355203 287 + 130588469 AATACTTGGTAGTCTTCAATATATAGGCTTTCACATC---ttttttcttcctttgtttctagacacaatctcactctttcacccaggctggagtacggtggcatgaacacagctcactgcagcatggaattctcaggcctgtgacatcctagggcctcatccactgagtacctgggactacaggctcacaccaccacatccggataatttttctggtttt-cggtagaaatgaggtctcactatgttgcctaggctagtttcaagcctctgagctcaagcgaccgtcctgc
i chlSab2.chr20               C 0 C 0
s rhiRox1.JABR01021417v1              0 290 -     10218 AATACTTGGTAGTCTTCAATATATAGGCTTTCACATCtttttttttcttcctttgcttctagacacaatctcactctttcactcaggctggagtacagtggcacgaacacagctcactgcagcatggaattctcagatctatgacatcctagggcctcatccactgagtacctgggactacaggctcacaccaccacacccggataatttttctgatttt-cagtagagatgaggtctcactatgttgcctaggctagtttcaagcctctgagctcaagcgaccctcttgc
i rhiRox1.JABR01021417v1      N 0 C 0

a score=148601.000000
s hg38.chr1_KI270714v1_random      1841 62 +     41717 cacagccttccaaagtgctgggattTGAAGCCAAGCCTGGCTGGCTTTCACGTCTTTTCTAT
s panTro4.chr1                114672989 62 - 228333871 cacagccttccaaagtgctgggattTGAAGCCATGCCTGGCTGGCTTTCATGTCTTTTCTAT
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599394 62 - 229942017 cacagccttccaaagtgctgggattTGAAGCCAAGCCTGGCTGGCTTTCACATCTTTTCTAT
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57114134 62 + 109391073 cacagccttccaaagtgctgggatttgaagccgagcctggcttgctttcacatcttttctat
i nomLeu3.chr12               C 0 C 0
s macFas5.chr1                106276499 62 + 227556264 CACAGCCTTCCAAAGTGCTGGCATTTGAGGCCGAGCCTGGCTGGTTTTCACATCTTTTCTAT
i macFas5.chr1                N 0 C 0
s papAnu2.chr1                121868782 62 + 220367699 cacagccttccaaagtgctgggatttgaagcCGAACCTGGCTGGCTTTCACATCTTTTCTAT
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13355490 62 + 130588469 cacagccttccaaagtgctggcatttgaggctgagccTGGCTGGTTTTCACATCTTTGCTAT
i chlSab2.chr20               C 0 C 0
s rhiRox1.JABR01021417v1            290 62 -     10218 cacagccttccaaagtgctgggattTGAAGCCAAACCTGGCTGGCTTTCACATCTTTTCTAT
i rhiRox1.JABR01021417v1      C 0 I 306

a score=174098.000000
s hg38.chr1_KI270714v1_random      1903 115 +     41717 GTAGTTTATATTTCTGGATGCCATTGAGAGTCTGGCTGGCTTTCACATATTTGCTATGTCGTTTATATTTCTTGATGTTATTGTAAATGTTTATTAAAAGAATCTTTTAAAAACT
s panTro4.chr1                114673051 115 - 228333871 GTAGTTTATATTTCTGGATGCCATTGAGAGTCTGGCTGGCTTTCACATATTTGCTATGTCGTTTATATTTCTTGATGTTATTGTAAATGTTTATTAAAGGAATCTTTTAAAAACT
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599456 115 - 229942017 GTAGTTTATATTTCTTGATGCCATTGAGAGCCTGGCTGGCTTTCACATGTTTGCTATGTCGTTTATATTTCTTGATGTTATTGTAAATGTTTATTAAAGGAATCTTTTAAAAACT
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57114196 115 + 109391073 gtagtttatatttcttgatgctagtgtgaGCCTGGCTGGCTTTCACATGTTTGATATGTAGTTTATGTTTCTTGATGTTATTGTAAATGTTTATTAAAGGAATCTTTAAAAAATT
i nomLeu3.chr12               C 0 C 0
s macFas5.chr1                106276561  58 + 227556264 GTAGTTTATGT---------------------------------------------------------TTCTTGATGTTATTGTAAATGTTTATTAAAGGAATCTTTTAAAAATT
i macFas5.chr1                C 0 C 0
s papAnu2.chr1                121868844 113 + 220367699 GTAGTTTATATTTCTTGATGCTA-TGCGAGCCTGGCTGACTTCCACATC-TTGCTATGTAGTTGATACTTCTTGATGttattgtatatgtttattaaaggaatcttttaaaaatt
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13355552  58 + 130588469 GTAGTTTATAT---------------------------------------------------------TTCTTGATGTTATTGTAAATGTTTATTAAAGGAATCTTTTAAAAATT
i chlSab2.chr20               C 0 C 0
s rhiRox1.JABR01021417v1            658 115 -     10218 GTAGTTTATATTTCTTGATGCTATTGTGAGCCTGGCTGACTTTCACATCTTTGCTATGTAGTTGATAGTTCTTGATGTTATTGTATATGTTTATTAAAGGAATCTTTTAAAAATT
i rhiRox1.JABR01021417v1      I 306 C 0

a score=2238.000000
s hg38.chr1_KI270714v1_random      2018 4 +     41717 TTGT
s panTro4.chr1                114673166 4 - 228333871 TTGT
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599571 4 - 229942017 TTGT
i ponAbe2.chr1                C 0 C 0
s chlSab2.chr20                13355610 4 + 130588469 TTGT
i chlSab2.chr20               C 0 I 87
e macFas5.chr1                106276619 0 + 227556264 C
e rhiRox1.JABR01021417v1            773 0 -     10218 C
e papAnu2.chr1                121868957 0 + 220367699 C
e nomLeu3.chr12                57114311 0 + 109391073 C

a score=76183.000000
s hg38.chr1_KI270714v1_random      2022 307 +     41717 TTTggccaggcgcggtggtccacgcctgtaatcctagcactttaggaggccgaggtgggtggatcatgaggtcagaagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaaaaaaaaaattagcctggcgtggtggcgggcgccggtagtcccaggtacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagtcaagatggtgccactgcactccagcctgggagacagagtgagagtctgtctcaaaaaaaaaaaaaaa
s panTro4.chr1                114673170 303 - 228333871 TTTggccaggcgcggtggtccacgcctgtaatcctagcactttgggaggccgaggtgggtggatcatgaggtcagaaggtcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaaaaaaaaaattagcctggcgtggtggcgggtgcctgtagtcccaggtacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccaagatggtgccactgcactccagcctgggagacagagtgagactccgtctcaaaaaaaaaaa----
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599575 299 - 229942017 TTTggccgggcacggtggtccacgcctgtaatcctagcactttgggaggccaagat-ggtggatcatgaggtcagaagatggagaccatcctggctaacatggtgaaaccccatctctactaaaaatac-----aaaaaaaaattagccgggcgtggtggcggtcacctgtagtcccaggtacttgggaggctgaagcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagatggtgccactgcactccagcctgggagacagtgtgagactccatctccaaaaaaaaaa--aa
i ponAbe2.chr1                C 0 C 0
e macFas5.chr1                106276619   0 + 227556264 C
e rhiRox1.JABR01021417v1            773   0 -     10218 C
e chlSab2.chr20                13355614  87 + 130588469 I
e papAnu2.chr1                121868957   0 + 220367699 C
e nomLeu3.chr12                57114311   0 + 109391073 C

a score=100603.000000
s hg38.chr1_KI270714v1_random      2329 101 +     41717 TTGTATTAAAATtatatatttaaggaattaca--tatatatttatatatatatataatacatatccttaaattatatatatttaaggaatacaacctgaggac
s panTro4.chr1                114673473  99 - 228333871 TTGTATTAAAATtatatatttaaggaattaca--tatatatttatatatatata--atacatatccttaaattatatatatttaAGGAATACAACCTGAGGAC
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599874 100 - 229942017 TTGTACTAAAATtatatatttaaggaattaca--tagatatttatatatctatac-atacatatccttaaattatatatatttaAGGAATACAACCTGAGGAC
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57114311  68 + 109391073 TTGTATTAAAATTATATATTTAAGGAATTACA--TAT---------------------------------ATTATATATATTTAAGAAATACAACCTGAGGAC
i nomLeu3.chr12               C 0 C 0
s macFas5.chr1                106276619  63 + 227556264 TTGTGTTAAAATTATATATTTAAGGAATTACA----------------------------------------TGTATATATTTAAGGAATACAACCTGAGGAC
i macFas5.chr1                C 0 I 36
s papAnu2.chr1                121868957  69 + 220367699 ttgtactaaaa-tatatatttaagaaattatatatat---------------------------------attatatatatttaaggaataCAACCTGAGgac
i papAnu2.chr1                C 0 C 0
s rhiRox1.JABR01021417v1            773  68 -     10218 TTGTACTAAAATtatatatttagggaattata--tat---------------------------------attatatatatttaAGGAATACAACCTGAGGAC
i rhiRox1.JABR01021417v1      C 0 I 6
e chlSab2.chr20                13355614  87 + 130588469 I

a score=2548.000000
s hg38.chr1_KI270714v1_random      2430 1 +     41717 t
s panTro4.chr1                114673572 1 - 228333871 T
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122599974 1 - 229942017 t
i ponAbe2.chr1                C 0 C 0
s nomLeu3.chr12                57114379 1 + 109391073 T
i nomLeu3.chr12               C 0 C 0
s macFas5.chr1                106276718 1 + 227556264 t
i macFas5.chr1                I 36 C 0
s papAnu2.chr1                121869026 1 + 220367699 t
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13355701 1 + 130588469 t
i chlSab2.chr20               I 87 C 0
s rhiRox1.JABR01021417v1            847 1 -     10218 T
i rhiRox1.JABR01021417v1      I 6 C 0

a score=43314.000000
s hg38.chr1_KI270714v1_random        2431 23 +     41717 acatatacata------------------------------------tacataATGAAC
s panTro4.chr1                  114673573 17 - 228333871 ACATATACATA------------------------------------------ATGAAC
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122599975 59 - 229942017 acatatacatatacatatacatatacatatacatatacatatacatatacataATGAAC
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57114380 41 + 109391073 Acagatacata------------------tccatatccatatccatatacataATGAAC
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106276719 23 + 227556264 acatatacata------------------------------------tacataATGAGC
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121869027 23 + 220367699 acatatacata------------------------------------tacataatgaac
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13355702 23 + 130588469 acatatacata------------------------------------tacataATGAGC
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1              848 23 -     10218 ACATATACATA------------------------------------TACATAATGAAC
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     29509 23 +     54187 ACATGTACATA------------------------------------CAGATAATGAAG
i calJac3.chr18_GL285785_random N 0 C 0

a score=2161898.000000
s hg38.chr1_KI270714v1_random        2454 658 +     41717 TAATGCCTACTAGGTGAGGGGCTGCCTTGTGAGCAAACCCAAGGTCCCTGGCTTATGAAGCCTTTGTCTAGAAGGATGGAGGG-ATCAGCAAGTTGGGCACACAGCAGGTTCTGTCTTTGGTGTGG-------------------GCATCTGCCCACTCGGGTCTCTGGCAATACTAACCAGGCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACTTCAGATCCAGAGACTGCAGTTGTCACCTGAGGACCTGGCGTAGGCGTGGAGGGGTCTCCCACTCACTTGGC--CCTGGGTCAATGCCCAAACATGCACAAGGACGGGACTCTCGGCCTCAATGCTTTAGGAGCCCCCAGTCTTCTAAAGAGGGTTTGTGGTG----------GGGAAGAATGTTCAACAAAACAGAAGAGTTATGGGTACTCTAGCTTGGCAACAGAGAATACTTCCTTGTGCTACTAAATGGCAATATTTGACAATTATGGATGACACAATTGAGCAACAGCTTTCACTGTTTAACAAGCAGGGTCTCTGGAACACTAGGTTAGTGCTGTCGGATGTTGACTGAAAAGTCAGTGGTTTGAGCCCATCCAGTCATATTAATGTTTCTAGCTGATGTGACCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATATCTCTTAAAGCTTCTCTT
s panTro4.chr1                  114673590 658 - 228333871 TAACGCCTACTAGGTGAGGGGCTGCCTTGTGAGCAAACCCAAGGTCCCTGGCTTATGAAGCCTTTGTCTAGAAGGAGGGAGGG-ATCAGCAAGGTAGGCACGCAGCAGGTTCTGTCTTTGGTGTGG-------------------GCATCTGCCCACTCGGGTCTCTGGCAATACTAACCAGCCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACTTCAGATCCAGAGACTGCAGTTGTCACCTGGGGACCTGGCGTAGGCGTGGAGGAGTCTCCCACTGACTTGGC--CCTGGGTCAATGCCCAAACATGCCCAAGGATGGGACTCTCGGCCTCAATGCTTTAGGAGCCCCCAGTCTTCTAAAGAGGGTTTGTGGTG----------GGGAAGAATGTTCAACAAAACAGAAGAGTTATGGGTACTCTAGCTTGGCAACGGAGAATACTTCCTTGTGCTACTAAATGACAATATTTGACAATTATGGATGACACAATTGAGCAACAGCTTTCACTGTTTAACAAGCAGTGTCTCTGGAACACTAGGTTAGTGCTTTCGGATGTTGACTGAAAAGTCAGTGGTTTGAGCCCATCCAGTCATATTAATGTTTCTAGCTGATGTGACCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATATCTCTTAAAGCTTCTCTT
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122600034 658 - 229942017 TAATGCCTGCTAGGTGAGGGGCTGCCTTGTGAGCAAACCCAAGGTCCCTGGCTAATGAAGCCTTTGTCTAGAAGGATGGAGGG-ATCAGCAAGGTGGGCACACAGCAGGTTCTGTCTTTGGTGTGG-------------------GCATCTGCCCACTTGGGTCTCTGGCAATACTAACCAGGCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACCTCAGATCCAGAGACTGCAGTTGTCACCTGGGGACCTGGTGTGTGTGTGGAGGAGTCTCCCACTGACTTGGC--CCTGGGTCAATGCCCAAACATGCACAAGGACAGGACTCTCGGCCTCAATGTTTTAGGAGCCCCCAGTCTTCTAAAGAGGGTTTGTGGTG----------AGGAAGAATGTTCAACAAAACAGAAGAGTTATGGGTACTCTAGCTTGGCAACAGAAAATACTTCCTTGTGCTACTAAATGGCAATATTTGACAATTATGGATGACACAATTGAGCAACAGCTTTCACTGTTTAACAAGCAGTGTCTCTGGAACACTAGGTTAGTGCTGTCAGATGTTGCCTGAAAAGTCAGTGGTTTGAGCCCATCCAGTCATATTAATGTTTCTAGCTGATGTGACCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATATCTCTTAAAGCTTCTCTT
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57114421 654 + 109391073 TAATGCCTACTAGGTGAGGGGCTGCCTTGTGAGCAAACCCAAGGTCCCTGGCTCATGAAGCCTTTGTGTAGAAGGATGGAGGG-ATCAGCAAGTTGGGCACACAGCAGGTTCTGTCTTTGGTGTGG-------------------GCGCCTGCCCACTCGGGTCTCTGGCAATACTAACCAGGCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAACGTGGATGACCTCAGATCCAGAGACTGCAGTTGTCACCTGGGGACCTGGCGTAGGTGTGGAGGAGTCTCCCACTGATTTGGC--CCTGGGTCAATGCCCAAACATGCACAAGGACAGGACTCTCGGCCTCAATGTTTTAGCAGCCCCCAGTCTTCTAAAGAGGGTTTGTGATA----------AGGAAGAATGTTCAACAAAACAGAAGAGTTATGGATACTCTAGCTTGGCAACAGAGAATACTTCCTTGTGCTACTAAAGGGCAATATTTGACAATTACGGATGACACAATTGAGCAACAGCTTTCACTGTTTAACAAGCAGTGTCTCTGGAACACTAGGTTAGTGCTGTCGGATGTTGACTGAAAAGTCAGTGGTTTGAGCCCATCCTGTCGCATTAATGTTTCCAGCTGACGTGACCTTCCATCTG--GAGTCTC-TTCCTTGG---ACCAAATA--TCTTAAAGCTTCTCTT
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106276742 648 + 227556264 TAATGCCTACTAGGTGAGG----GCCTTGTGAGTAAACCCAAGGTCCCTGGCTCACGAAGCCTTTGTCTAGAAGGATGGAGGG-ATCAGCAAGGTGGGCACACAGCAGGTTCTGTCTTTGGTGCGG-------------------GCACCTGCCCACTCGGGTTTCTGGCAATACTAACCAGGCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACCTCAGATCCAGAGACTGCAGTTGTCACCTGGGGACCTGGCATGTGCGTGGAGGAGTCTCCCACGGATTTGGC--CCTGGGTCAATGCCCAAACATGCACAGGGACAGGACTCTCGGCCTCAATGTTTTAGGAGCCCCCGGTCTTCTAAAGAGGGTTTGTGGTG----------GGGAAGAATGTTC-----AACAGAACAGTTACGAGTACTCTAGCTTGGCAACAGAGAATACTTCCTTGTGCTACTAAATGGCAATATTTGACAATTATGGATGACACAATTGAG-AACAGCTTTCACTCTTTAACAAGCAGTGTCTCTGGAACCCTAGGTTAGTGCTATTAGATGTTGACTGAAAAGTCAGTGGTTTGAGCCCATCCAGTCACATTAATGTTTCTAGCTGACGTGACCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATAGATCTTAAAGCTTCTCTT
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121869050 658 + 220367699 TAATGCCTACTAGGTGAGGGGCTGCCTTGTGAGCAAACCCAAGGTCCCTGGCTCACGAAGCCTTTGACTAGAAGGATGGAGGG-ATCAGCAAGGTGGGCACATGGCAGGTTCTGTCTTTGGTGCGG-------------------GCACCTGCCCACTCGGGTTTCTGGCAATACTAACCAGGCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACCTCAGATCCAGAGACTGCAGTTGTCACCTGGGGACCTGGCATGTGTGTGGAGGAGTCTCCCACAGATTTGGC--CCTGGGTCAATGCCCAAACATGCACAAGGACAGGACTCTTGGCCTCAATGTTTTAGGAGACCCCGGTCTTCTAAAGAGGGTTTGTGGTG----------GGGAAGAATGTTCAACAAAACAGAACAGTTACGAGTACTCTAGCTTGGCAACAGAGAATACTTCCTTGTGCTACTAAATGGCAATATTTGACAATTATGGATGACACAACTGAGCAACAGCTTTCACTGTTTAACAATCAGTGTCTCTGGAACACTAGGTTAGTGCTATTGGATGTTGACTGAAAAGTCAGTGGTTTGAGCCCATCCAGTCACATTAATGTTTCTAGCTGACATGACCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATATATCTTAAAgcttctctt
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13355725 654 + 130588469 TAATGCCTACTAGGTGAGG----GCCTTGTGAGTAAACCCAAGGTCCCTGGTTCACGAAGACTTTGTCTAGAAGGATGGAGGG-ATCAGCAAGGTGGGCACACGGCAGGTTCTGTCTTTGGTGCGG-------------------GCACCTGCCCACTCGGGTTTCTGGCAATATTAACCAGGCTTCACAATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACCTCAGATCCAGAGACTGCAGTTGTCACCTGGGGACCTGGCATGTGTGTGGAGGAGTCTCCCACGGATTTGGC--CCTGGGTCAATGCCCAAACATGCACAAGGACAGGACTCTCGGCCTCAATGTTTTAGGAGCCCCCGGTCTTCTAAAGAGGGTTTGTGGTG----------GGGAAGAATGTTCAACAAAACAGAACAGTTACGAGTACTCTAGCTTGGCAACAGAGAATACTTCCTTGTTCTACTAAATGGCAATATTTGACAATTATGGATGACACAATTGAGCAACAGCTTTCACTCTTTAACAAGCAGTGTCTCTGGAACCCTAGGTTAGTGCTATTGGATGTTGACTGAAAAGTCAATGGTTTGAGCCCATCCAGTCACATTAATGTTTCTAGCTGACATGACTTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATATATCTTAAAGCTTCTCTT
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1              871 658 -     10218 TTATGCCTACTAGGTGAGGGGCTGCCTTGTGAGCAAACCCAAGGTCCCTGGCTCACGAAGCCTTTGTCTAGAAGGATGGAGGG-ATCAGCAAGGTGGGCATGTGGCAGGTTCTGTCTTTGATGCGG-------------------GCACCTGCCCACTCGGGTCTCTGGCAATACTAACCAGTCTTCACGATGGGT-GAGGTGAGCTAGGAATGGGAAAGTGGATGACCTCAGATCCAGAGACTGCAGTTGTCACCTTGGGACCTGGCATGTGTGTGGAGGAGTCTCCCACAGACTTGGC--CCTGGGTCAATGCCCAAACATGCACAAGGACAGGACTCTCGGCCTCAATGTTTTAGGAGCCCCTGGTCTTCTAAAGAGGGTTTGTGGTG----------GGGAAGAATGTTCAACAAAACAGAACAGTTACGAGTACTCTAGCTTGGCAACAGAGAATACTTCCTTGTGCTACTAAATGGCAATATTTGACAATTATGGATGACACAATTGAGCAACAGCTTTCACTGTTTAACAATCAGTGTCTCTGGAACACTAGGTTAGTGTTATTGGATGTTGATGGAAAAGTCAGTGGTTTGAGCCCATCCAGTCACATTAATGTTTCTAGCTGACGTGAGCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACTAAATATATCTTAAAGCTTCTCTT
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     29532 670 +     54187 CAATGCCTACTCGGTGAGGGGCTGCCTTGTGAGCAACCCCAAGGGCCCTGGCTCATGAAACCCTTGGCTAGAAAGGTGGAGGG-ATCAGCCAGGTGGGCACACAGCAGGTTTCTTGTTTTCTTCTGGCAAACACACACACAAATAGCACCTGCTCACTGGAGTCTCTGGCAACCCTGACCAGGCTTCATGATGGGT-GAGGTGGGCTAGAAATGGGAAAGTGGATGACCCCAGATCTAGAGACTGCCGCTGTCACCTGGGCACCTGGAATGTGCGTGGAGGAGTCTCCCACAGATTTGGG--TTTGGATCAATGCCCAAACATGCACAAGGACAGGACTCTTGGCCTGGATGTTTGCAGAGCTCCCAGTCTTCTAAAGA-GGCTGGTGGTG----------GGGAAGAAGTTTCAACAAAACAGCAGAGTTATGGGTACTCGAGCTTGG-AACAGAGAATACCTCCCTGTACTACTAAATGACAGTATCTGACAATGATGAATGACAC--TTGAGCAGCAGCTTTCACTGTTTCACAAGCAGTgtctctggaccactaggttggtgctgtcagatgttgactgaaa---cagtggttcgagcccatccagTCACATTAATGTTTCTAGCTGACATGACCTTCCATCTGAAGAGTCTC-TTCCTTGG---ACCAAATATATCTTAAAACTTCTCTT
i calJac3.chr18_GL285785_random C 0 I 141
s tarSyr2.KE940080v1                18992 665 +     35544 TATTGTTTTCTTAGCAAGGAGCTGTTTTGGAAGCAAACCCAAGGTCCCGGCCTCATGGAACTTTCATCGAGAGGCATCAAGGGTGGCTACACAGGAGGCACTCAGGAATTCTGGTCCTCAGTATGT-------------------GTGCCCAGCC-CCGGGGTCTCAGGTCATTGTGAGGAG----CAGTATGTGTGGAGCTGGGCTATGAATGGGAGAGCGAATGGCTTCCAACCAAGGGGCTATTG-TGTCGCCTGGGTGCCTGGTGTTTGGGTGGAGGAG---CCCCCGCGATTGACAGTCTGTGTCAATGCCCAAATATGCACAGTGACAGGACTCTTGGCATCAGTGTTCTCAAAGCCCCCAGGCTTCTGACGTGGATTGGTGGTGGTGGTAGGAAGGGAGGGATGCTGAGCAGAACAGAGGAGTTGAGGTTACCCTAGCTTGGGGACAGAGAATGCTTCC-TGTGCCACTGGATGATAGTATTTGGGGATTATGTAGGACATGATTGATGAACAGCTCCCACAGTTT-GCAGTTGGTGTCTCTGGCACAGTAGAGTAGCGCAGTGTGTTGTCAACTGGAATTTTGGTGGTTTGAACTCACCCGAGGATATCCCTATTTCTAGCTGAGGTGACCTTTGATGTTAAGATTCCCTTTCCTTGGGATACTGAGTATATCCTAAAGCTTCTCGT
i tarSyr2.KE940080v1            N 0 C 0

a score=6119231.000000
s hg38.chr1_KI270714v1_random        3112 1947 +     41717 CTTCTTGTCTCTTGTC--CATTCTCTAAGATGCCTCTTTGTTGCTTGGGGC-AAAAAAAGTCCATTTTTAATCCACACCCAACAAACATCTACCCTTACGTATCCTGGTTTTTAGGGTTTTGA----GTCTG-----TTGTTTGTTTTCTCAGCTTCTCATATTTGGAATACTGGAAATTCCTAAAGTGGAGAATGACAGAACATGAATCACACCTATGGtgaagccacaggccctggatgaaaaacctaatctgccagcgtttgaagttaaacacattaatcttctgtgcctccatttctatctgtccaatgggctaaatcagaacacttaggttgtccagtgtttaaatgagcagtgcaggaaaagcctggag-ccaatgcctgtcacgtagtaattggtcaacacgcatgagctcctatCAGCGCCATGGTCTCCAGCATTTCCATCAGGCTTTGATCTTTGAAATGTCCTTCTTGAtatgaatggatcattcctcaaacattctctaaccgatggccatgaaattgctccaatgtgtattatta---caaatacaactgcagggaccagactgacacatgtatctgtcgtgcatcgcttgtctatttctccgtagacacccggagatggaattgtcagaccaaagtatttatacatgtttgattttgctaatttctgtctaaattac-----------------tgtgaaaagaaaatataacatgtcatacctttaacattttttgagaattctttt-tttctccatcttc-tggtcaaaactggg---------AAGTACTTGCCTACCATTTCCTCTGAACTCACTTTTGCCAACATTTGTGTAGTCATACAGTGGGATCACATTATATGCATGACATCAAACTCAAATCCTTAAATGAA---AGCGATTAACATGACTGTGTAAAAATTTATCTTCAAAatacaatg------------------------aatacatatatacacacatacttatatCGGAAAGGAATTATTTTATTT---GGATACTTTATCAAAGTCATATATACTTGAAAATTTGTTTAGTAAAACAGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACATAGAAGCAAttatttcgttatttatctcc-ttatgtctaaatagatattattac-tttttgattttcaagtttaggcactacctctccttcacatacttgctcatcaccaccacc---cccaaacacgcctctc--accaccttaccctccaacacgtttgtgtcctcgtttgctggg-tcaattgctacattgttataact-tgtatattttattcagagttcagtcacatTGGACATACATAGCAGGAATGAGAGGCCAGTATCTTCAGGGACTCTCTCTCAAGTGGATAAGCTTCAG-AGATTTTTGTAATCTTTGGTCACTCTCCC---CATCTTTTTCCTATTCCAGGTAAGTACTGGATCTGATGGGCCCAGCTCAGGTCAGGCACTCTCTCC-TTGAGCAGTGGAGAGCGGGACATCTTCATGTGTAGTACCAGGAAGACACTGTCCAAAGAGGGACAGGTAGTTCTAAGACAGAAA--AGTCTGTCTGGGGTACAGGTAGGCAAAACAAGGACACACACACAAAAA--TTAGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAGGG------------------------------------GAGAGTTTTGAGAGATATGGGCCATGGATATCACTCTGTGGGCCGGAGCCACACAAGACGGTTGGGGTCTCTCAGGGGCAGGGAGCTGAGGAGGATCTGCCCTCCCCAACCTG-GGAGACTGGTGAGGGGACTGTCCTGGTCACCAGACAGAAATGGGGCCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACA---TCTCCTT-----AAGGAAAGGTCCTGAG-TCAGGTCTTGGCAGGGAGGGAGGTTACCTTGCCCATTGGCGGCTGAAGATGGTTGGCCAGATGAGGGCACTGAAATCCATGTCCTCTAAACTTGTAGTTC-AGTAAAAGAAT
s panTro4.chr1                  114674248 1941 - 228333871 CTTCTTGTCTCTTGTC--TATTTTCTAAGATGCCTCTTTGTTGCTTGGGGC-AAAAAAAGTCCATTTTTAATCCACACCCAACAAACATCTACCCTTACGTATCCTGGTTTTTAGGGTTTTGA----GTTTG-----TTGTTTGTTTTCTCAGCTTCTCATATTTGGAATACTGGAAATTCCTAAAGTGGAGAATGACAGAACGTGAATCACACCTATGGTGAAGCCACAGGCTCTGGATGAAAAACCTAATCTGCCAGGGTTTGAAGTTAAACACAttaatcttctgtgcctccatttctatctgtccaatgggctaaatcagaacacttaggttgtccagtgtttaaatgagcagtgcaggaaaagcgtggag-ccaatgcctgtcacgtagtaaTTTGTCAACACGCATGATCTCCTGTCAGCGCCATGGTCTCCAGCATTTCCATCAGGCTTTGATCTTTGAAATGTCCTTCTTGATATGAAAGGATCATTCCTCAAACAT----TAACCAATGGCCATGAAATTGCtccaatgtgtattatta---caaatacaactgcagggaccagactgacacatgtatctgttgtgcatcacttgtttatttctccgtagacacctacagatggaattgtcagaccaacgtatttatacatgtttgattttgctaatttctgtctaaattac-----------------tgtgaaaagaagatataacatgtcatacttttaacattttttgagaattctctt-tttctccatcttc-tggccaaaactggg---------AAGTACTTGCCTACCATTTCCTCTGAACTCACTTTTGCCAACATTTGTGTAGTCATACAGTGGAATCACATTATATGCATGACATCAAACTCAAATCCTTAAACGAA---AGCGATTAACATGACTGTGTAAAAATTTATCTTCAAAATACAATG------------------------AATACATATATACACACATACTTATATGGGAAAGGAATTATTTTATTT---GGATACTTTATCAAAGTTATATATACTTGAAAATTTGTTTAGTAAAATAGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACATAGAAGCAATTATTTCGTTATTTATCTCCTTTATGTCTAAATAGATATTA-----TTTTTGATTTTCAAGTTTAGGCACTACCTCTCCTTCACATACTTGCTCATCACCACCACC---CCCAAACACGCCTCTC--ACCACCTTACCCTCCAACACGTTTCTGTCCTCGTTTGCTGGG-TCAATTGCTACATTGTTATAACT-TGTATATTTTATTCAGAGTTCAGTCACATTGGATATACATAGCAGGAATGACAGGCCAGTATCTTCAGGGAGTCTCTCTCAAGTAGATAAGCTTCAG-AGATTTTTGTAATCTTTGGTCACCCTCCC---CATTGTTTTCCTATTCCAGGTAAGTACTGGATCTGATGGGCCCAGCTCAGGTCAGGCACTCTCTCC-TTGAGCAGTGGAGAGTGGGACATCTTCATGTGTAGTACCAGGAAGACACTGTTCAAAGAGGGACAGGTAGTTCTAAGACAGAAA--AGTCTATCTGGGGTACGGGTAGGCAAAACAAGGGTACACACACAAAAA--TTAGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAGGG------------------------------------GAGAGTTTTGAGAGATATGGGCCATGGATATCACTCTGTGGGCCGGAGCCACACAAGATGGTTGGGGTCTCTCAGGGGCAGGGAGCTGAGGAGGATCTGCCCTCCCCAACCTG-GGAGACTGGTGAGGGGACTGTCCTGGTCACCAGACAGAAATGGGGTCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACA---TCTCCTT-----AAGGAAAGGTCCTGAG-TCGGGTCTTAGTAGGGAAAGATGTTACCTTGGGCATTGGCAGCTGAAGATGGTTGGCCAGATGAGGGCACTGAAATCCATGTCCTATAAACTTGTAGTTCTAGTAAAAGAAT
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122600692 1977 - 229942017 CTTCTTGTCTCTTGTC--TATTTTCTAAGGTGTCTCCTTGTTGCTTGGGGCAAAAAAAAGTCCATTTTTAATCCACACCCAACAAACATCTACCCTCACTTATCCTGATTTTTAGGATTTTGA----GTTTG-----TTGTTTGTTTTCTCAGCTTCTCGTGTTTGGAATACTGGTAATTCCTAAAGTGGAGAATGACAGAACCTGAATCACACCTATGGTGAAGCCACAGGCTCTGGATGAAAAACCTCATCTGCCAGGGTTTGAAGTTAAACACAttaatctcctgtgcctccatttctatctatccaatgggctaaatcagaacacttaggttgtccagtgtttaaatgagcagtgcaggaaaagcgtggag-ccaatacctgtcacgtagtaattggtcaacacacatgagctcCTATCAGAGCCATGGCCTCCAGCATTTCCATCAGGTTTTGATCTTTGAAATGTCCTTCTTGgtatgaaaggatcattcctcaaacattctgtaactgatggcgatgaaattgctccaatgtgtattatta---caaatacaactgcagggaccagactgacacatgtatctattgtgcattgcttgtctatttctccgtagacacctggagatggaattgtcagaccaaagtatttatacatttctgattttgctaatttctgtctaaattAC-----------------TGTGAAAGGAAAATATAACATGTCATACTTTTAACATTTTTTAAGAATTCTTTT-TTTCTCCATCTTC-TGGCCAAAACTGGGTCAGAAAAAATGTACTTGCCTACCATTTCCTCTGAACTTACTTTTGCCAACATTTCTGTAGTCATACAGTGAGATCACAT----TGTATGACATCAAACTCAAATCCTTAAATGAAAAGAGGGATTAACATGACTGTATAAAAATTTATCTTTAAAATACAATGAATGCAAatatatatgtgtatataaatacatatatacacacatacatatatGGGAAAGGAATTTTTTTATTT---GGATACTTTATCAAAGTTATATATACTTGAAAATTTGTTTACTAAAATAGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACATAGAAGCAATTATTTAGTtatttatctcc-ttatgtctaaatagatatta---c-tttttgattttcaagtttaggcactacctctccttcacatacttgctcatcaccaccacc---cccaaacatgcctctc--accaccttaccctccaacacgtttgtgtcctcctttgctggg-tcaattgctacattgttataact-tgtatattttattcagagtttagtcaCATTGGATATACATAGCAGGAATGAGAGGCCAGTATCTTCAGGGACTCTCTCTCAAGTGGATAAACGTCAG-AGATTTTTGTAATCTTTGGTCACTCTCCC---CATCTTTTTCCTATTCCAGGTAAGTACTGGGTCTAATGGGCCCAGCTCAGGTCAGACACTCTCTCC-TTGAGCAGGGGAGAGTGGGACATCTTCATGTGTAGTACCAGGAAGACACTGTCCAAAGAGGGACAGGTAGTTCTAAGACAGAAA--AGTCAATCTGGGGTACAGGTAGGCAAAACAAGGACACACATGCAAAAA--TTAGTCTGTTCT-TGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAAGG------------------------------------GAGAGTTTTGAGAGATATGGGCCATGGATATCCCTCTGTGGGCTGGAGCCACACAAGACTCTTGGGGTCTCTCAGGGGCAGGGAGCTGAGGAGGATCTGCCCTCCTCAACCTG-GGAGACTGGTGAGGGGACTGTCCTGGTCACCAGACAGAAATGGGGTCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAAGAGGACA---TCTCCTT-----AAGGAAAGGTCCTGAG-TCAGGTCTTGGTAGGGAGGGAGGTTACCTTGGGCACTGGCAGCTGAAGATGGTTGGCCAGATGAGGGCACTGAAATCTATGTCCTATAAACTTGTAGTTCTGGTAAAAGAAT
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57115075 2016 + 109391073 CTTCTTGTCTCTTGTC--TATTTTCCAAGGTGCCTCTTTGTTGCTTGGGGC-AAAACCAGTCCATTTTTAATCCACACCCAACAAACATCTACCCTTACTTATCCTGgtttttatggttttga----gtttgtttgtttgtttgtttTCTCAGCTTCTCATATTTGGAACACTGGAAATTCCTAAAGTGGAGAATGACAGAAACTGAATCACACCTATGGTGAAGCCACAGGCTCTGGATGAAAAACCTAATCTGCCGGGGTTTGAAGTTAAACACAttaatcttctgtgcctccatttctatctgtccaatgggctaaatcagaacacttaggctgtccagtgtttaaatgagcagtgcaggaaaagcgtggag-ccaatgcctgtcatgtagtaattggtcaacaCGCATGAGCTCCTATCAGCGTCATGGCCACCAGCGTTTCCATCAGGCTTTCATCTTTGAAATGTCCTTCTTGATATGAAAGGATCATTCCtcaaacattctctaaccgatggccatgaaattgctgcagtgtgtattattattgcaaatacaactgcagggaccagactgacacaggtatctgtcgtgcattgcttgtctatttctccgtagacacctggaaatggaattgtcagaccaaagtatttatacatttctgattttgctaatttctgtctaaattac-----------------TGTGAAAAGAAGATATAAAAAGTCTTACTTTTGATATTTTATGGGAATTCTTTT-TTTCTCCATCTTC-TGGCCCAAACTGGG---------AAGTACTTGCCTACCGTTTCCTCCAAACATACTTTTGCCAACATTTCTGTAGTCATACAGTGAGATCGCATTGTATGCATGACATCAAACTCAAATCCTTAAAGGAAAAGAGGGATTAACATGACTGTATAAAAATTTATCTTCAAAATACAATGAATGCAAatatatatgtgtatataaatacatatatacacacatacatatatGGGAAAGGAATTTTTTTATTT---GGATACTTTATCAAAGTTATATACACTTGAAAATTTGTTTAATAAAACAGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACATAAAAGCAATTATTTAGTTATATATCTCC-TTATGTCTAAATAGATATTATTAC-TTTTTGATTTTCAAGTTTAGGCACTACCTCTCCTTCACATACTTGCTCAT---CACCACC---CCCAAACATGCCTCTC--ACCACCTTACCCTCTAACACGTTTGTGTCCTCATTTTCTGGG-TCAATTACTATATTGTTATAACT-TGTATATTTTATTCAGAGTTCAGTCACAGTGGATATACATAGCAGGAATGAAAGGCCAGTATCTTCAAGGACTCTCTCTCAAGTGGATAAGCTTCAG-AGATTTTTGTAATCTTTGGTCACCCTCCC---CATCTTTTTCCTATTCCAAGTAAGTACTGGATCTGATGGGCGCAGCTCAGGTCAGGCACTCTCTCC-TTGAGCAGGGGAGAGCGGAACATCTTCATGTGTATTACCAGGAAGACACTGTCCAAAGAGGGACAGGTACTTCTAAGACAGAAA--AGTCAATCTGGGGTACGAGTAGGCAAAACAAGGACACAAA---AAAAC--CGAGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGAGTGGATTCAGAGT-GGGAGGGGAGCATGCAGTAGAGAGTGGATTCAGAGTGGGAGGAGAGAGTTTCGAGAGATATGGGCCATGGATATCCCTCTGTGGGCTGGAGCCACACAAGACTCTTGGGGTCTCTCAGGGGCAGGGACCTGAGGAGAATCTGCCCTCCCTAACCTG-GAAGACTGGTGAGGGGACTGTCCTGCTCACCAGACAGAAACGGGGTCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACATCTTCTCCTT-----AAGGAAAGGTCCTGAG-TCAGGTCTTGGTAGGGAGGGAGGTTACCTTGGGCATTGGCAGCTGAAGATGTTTGGCCAGATGAGGGCACTGAAATCTATGTCCTATAAACTTGTAGTTCTAGTAAAAGAAT
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106277390 1968 + 227556264 CTTCCTGTCTCTTGTT--TATTTTCCAAGGTGCCTCTTTGTTGCGTGGGGC-AAAAAAAGTCCATTTTTAATCCACACCCAACAAACGTCTACTCAATCTTATCCTGGTTTTTAGGGTTTTGAGTTTGTTTG----TTTGTTTGTTTTCTCAGCTTCTCATATTTGGAATACTGTAAATTCCTAACGTGGAGAATGACAGAACCTGAATCACACCTATGGtgaagccacaggctctgggtgaaaaacctaatctgccagggtttgaagttaaacacattaatcttctgtgcctccatttcta----ttaaatgggctaaatcagaacacttaggttgtccaatgtttaaatgagcagtgcaggaaaagcgtggag-ccaatgcctgtcacatagtaattggtcaacacgcgtgagctcctatcaGCGTCAGGGCCTCCAGCATTTCCATCAGGCTTTGATCCTTGAAATTTCCTTCTTGATGTGAATGAATCATTCTTCAAACATCCTCTAACCCATGGCCATGAAATTGCTCCAGTGTGTATtatta---caaatacaactgcagggaccagactgacatatgcatctgtcatgcattgcttgtctatttctctgtagacacctgaggatggaattgtcagaccaaagtgtttatacatttcagatttt-ctaatttctttctaaattac-----------------tgtgaaaagaagatataacaaatcatacttttaacattttatgagaattctttt-tctctccatcttc-tggccaaaactggg---------AAGTACTTGCCTACCATTTGCTCTGAACTTACTTTTGCCAACATTTCTGTAGTCATACAGTGGGATCACATTGTATGCATGACATCAAACTCAAATCCTCAAATGAAAAGAAGGATTAACATGATTGTATAAAAATTTATACTCAAAATACAATGAATGCAAatatatatgtgtatataaatacatatatacacacatacatatatGGAAAAGGAAATTTTTTATTT---GGTTACTTTATCAAAGTTATGTATACTTGAAAATTTGTTTAATAAAACAGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACAT-GAAGCA--------GTTATTTATCTCC-TTATGTCCAAACAGATATTATAATATTTTTGATTTTCAAGTTTAGGCACTATCTCTCCTTCACATACTTGCTCATCACCACTCCC-CACCCAAACATGCCTCTC--ACTACCTCACCCTCTAACATGTTTGTGTCCTAGTTTGCTGGG-TCAATTACTGCATTGTTATAACT-TGTACATTTTATTCAGAGTTCAGTCACATTGGATATACATAGCAGGAATGAAAGGCCAGTATCTTCAGGTTCTCTCTCTCAAGTGGAGAAGCTTCAG-AGATTTTTGTAATCTTTGGTCACCAGCAC---CGTCTTTTTCCTATTCCAGGTAAGTACTGGATCTGATGGGCCCAGCTGAGGTCAGGCACTCACTCC-TTGAGCAGGGGTGAGTGGGACATCTTCATGTGTAGTACCAGGAAGACACTGTCTAAAGAGGGACAGGTAGTTCTAAGACAGAAA--AGTCAATCTGGGGTACGGGTAGGCAAAATGAGGACACGAA---AAAAA-CGGTGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAGGG------------------------------------GAGAGTTTTGAGAGATATGGGCCATGGATATCCCTCTGTGGGCTGGAGCCGCACAGGACTCTTGGGGTCTCTCAGGGGCAGGGAGCTGAGGAAAATCTGCCCTCCCCAACCTC-GGAGACTGGTGAGGGGACTGTCCTTGTCACCAGACAGAAATGGGGTCTAGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACA---TCTCCTT-----AAGGTAAGGTCCTGAGTTCAAGTCTTGCTAGGGAGGGAGGTTACCTTGGGCATTGGCAGCTGAGGATGGTTGGCCAGATGAGGGCACTGAAATCTATGTACTATAAACTTCTAGTTCTAGTAAAGGAAT
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121869708 1966 + 220367699 cttcctgtctcTTGTT--TATTTTCCAAGGTGCCTCTTTGTTGCTTGGGGC-AAAAGAAGTCCATTTTTAATCCACACCCAACAAACATCTACCCTCTCTTATCCTGGTTTTTAGGgttttga--------g----tttgtttgttttctcagctTGTCATATTTGGAATACTGGAACTTCCTAAAGTGGAGAACGACAGAACCTGAATCACACCTATGGTGAAGCCACAGGCTCTGGATGAAAAACCAAATCTGCCAGGGTTTGAAGTTAAACACATTAAtcttctgtgcctccatttctatCTGTTCAATGGGCTAAATCAGAACACTTAGGTTTTCCAAAGTTTAAATGAGCAGTGCAGGAAAAGCGTGGAG-CCAATGCCTGTCACATAGTAATTGGTCAACACGCATGAGCTCCTTTCAGCGTCCGGGCCTCCAGCATTTTCATCAGGCTTTgatttttgaaatgt-ctttttgaTGTGAATGAATCATTCTTTAAACATTCTCTAACCGATGGCCATGAAATTGCTCCAAtgtgtattatta---aaaatacaactgcAGGGAACAGACTGACACATGCGTCTGTTGTGCATCACTTGTCTATTTCTCTGTAGACACCTGGAGATGGAATCGTCAGACCAAAGTATTTATACATTTCTGATTTTGCTAATTTCTGTCTAAATTAC-----------------TGGGAAGAGAAGATATAACAAGTcatacttttaacattttatgagaattcttttctttctccatcttc-tgGCCAAAACTGGG---------AAGTACTTGCCTACCATTTGCTCTGAACTTACTTTTGCCAGCATTTCTGTAGTCATACAGTGGGATCACATTGTATGCATGACATCAAACTCAAATCCTTAAACAAAAAGAGGGATTaatatgactgtataaaaatttatattcaaaatacaatgaatgcaaatatatatatgtatataaatacatatattcacacatacatatatgggaaaggaatttttttattt---ggatACTTTAGCAAAGttatatatacttgaaaatttgtttaataaaacaGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACAT-GAAGCAATTATTTGGTTATTTATCTCC-TTATGTTTAAATAGATATTATAAC-TTTTTGATTTTCAAGTTTAGGCACTATCTCTCCTTCACATACTTGCTCATCACCAC-CCC-CACCCAAACATGCCTCTC--ACTACCTCACCCTCTAACATGTTTGTGTCCTAGTTTGCTGGG-TCAATTACTGCATTGTTATAACT-TGTACATTTTATTCAGGGTTCAGTCACATTGGATATACATAGCAGGAATGAAAGGCCAGTATCTTCAGGTTCTCTCTCTCAAGTGGATAAGCTTCAGTCTCTTTTTGTAATCTTTGGTCACCCTCCC---CATCTTTTTCCTATTCCAGGTAAGTACTGGATCTGATGGGCCCAGCTGAGGTCAGGCACTCACTCC-TTGAGCAGGGGTGAGTGGGACATCTTCATGTGTAGTACTAGGAAGACACTGTCTAAAGAGGGACAGGTAGTTCTA----AGAAA--AGTCAATCTGGGGTACGGGTAGGCAAAATGAGGACACGaa---aaaaa-CGGTGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAGGG------------------------------------GAGAGTTTTGAAAGATATGGGCCATGGATATCCCTCTGTGGGCTGGAGCCACACAGGACTCTTGGGGTCTCTCAGGGGCAGGGAGCTGAGGAGAATCTGCCCTCCCCAACCTC-GGAGACTGGTGAGGGGACTGTCCTTGTCACCAGACAGAAATGGGGTCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACA---TCTCCTT-----AAGGTAAGGTCCTGAGTTCAAGTCTGG-TAGGGAGGGAGGTTACCTTGGGCATTGGCAGCTGAGGATGGTTGGCCAGATGAGGGCACTG-AATCTATGTACTATAAACTTGTAGTTCTAGTAAAAGAAT
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13356379 1970 + 130588469 CTTCTTGTCTCTTGTC--TATTTTCCAAGGTGCCTCTTTGTTGCGTGGGGC-AAAAAAAGTCCATTTTTAATCCACACCCAACAAACATCCACCATCTCTTATCCTGGTTTTTAGGGTTTTGA----GTTTG----TTTGTTTGTTTTCTCAGCTTCTCATATTTGGAATACTGTAAATTCCTAACGTGGAGAACGACAGAACCTGAATCACACCTATGGCGAAGCCACAGGCTCTGGATGAAAAACCTAATCTGCCAGGGTTTGTAGTTAAACACAttaatcttctgtgcctccatttctatctgttcaatgggctaaatcagaacacttaggtcgttcaatgtttaaatgagcagtgcaggaaaagagtggag-ccaatgcctgtcacatagtaattggtcaacaCGCATGAGCTCCTATCAGCGTCAGGGCCTCCAGCATTTCCATCAGGCTTTGATATTTGAAATGTCCTTCTGGATGTGAATGAATCAttcttcaaacattctctaaccgacggccttgaaattgctccagtgtgtattatta---caaatacaactgcagggaccagactgacatatgcatctgtcgtgcattgcttgtctatttctctgtagacacctgaggatggaattgtcagaccaaagtgtttatacatttcagattttgctaatttctttctaaattac-----------------tgtgaaaagaagatataacaaatcatacttttaacattttatgagaattcttttctttctccatcttc-tggccaaaactGGG---------AAGTACTTGCCTACCATTTGCTCTGAACTTACTTTTGCCAGCATTTCTGTAGTCATACAGTGGGATCACATTGTATGCATGACATCAAACTCAAATCCTTAAACAAAAAGAGGGATTAATATGATTGTATAAAAATTTATACTCAAAATACAATGAATGCAAatatatatgtgtatataaatacatatattcacacatacatatatGGGAAAGGAAATTTTTTATTT---GGTTACTTCATCAAAGTTATATATACTTGAAAATTTGTTTAATAAAACAGCAGTCCCCTTGTGTACTCCCA-GAGTTTCATCACAT-GAAGCA--------ATtatttatctcc-ttatgtccaaacagatattataatatttttgattttcaagtttaggcactatctctccttcacatacttgctcatcaccaccccc-cacccaaacatgcctttc--actacctcaccctctaacatgtttgtgtcctagtttgctggg-tcaattactgcattgttataact-tgtacattttattcagagctcagtcaCATTGGATATACATAGCAGGAATGAGAGGCCAGTATCTTCAGGTTCTCTCTCTCAAGTGGATAAGCTTCAG-AGATTTTTGTAATCTTTGGTCACCCGTGC---CATCTTTTTCCTATTCCAGGTAAGTACTGGATCTGATGGGTCCAGCTGAGGTCAGGCACTCACTCCTTTGAGGAGGGCAGAGCAGGACATCTTCATGTGTAGTACCAGGAAGACACTGTCCAAAGAGGGACAGGTAATTCTAAGACAGAAA--AGTCAATCTGGGGTACGGGTAGGCAAAACAAGGACACAAA---AAAAA--GGTGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAGGG------------------------------------GAGAGTTTTGAGAGATATGGGCCATGGATATTCCTCCGTGGGCTGGAGCCACACAGGACTCTTGGGGTCTCTCAGGGGCAGGGAGCTGAGGAGAATCTGCCCTCCCCAACCTT-GGAGACTGGTGAGGGGACTGTCCTTGTCACCAGACAGAAATGGGGTCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACA---TCTCCTT-----AAGGTAAGGTCCTGAGTTCAAGTCTTGGCAGGGAGGGAGGTTACCTAGGGCATTGGCAGCTGAAGATGGTTGGCCAGATGAGGGCACCGAAATCTATGTACTATAAACTTGTAGTTCTAGTAAAAGAAT
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             1529 1977 -     10218 CCTCCTGTCTCTTGTC--TATTTTCCAAGGTGCCTCTTTGTTGCGTGGGGC-AAAAAAAATCCATTTTTAATCCACATCCAACAAACATCTACCCTCTCTTATCCTGGTTTTTAGGGTTTTGA--------G----TTTGTCTGTTTTCTCAGCTTGTCATACTTGGAATACTGGAAATTCCTAACGTGGAGAACGACAGAACCTGAATCACACCTATGGTGAAGCCACAGGCTCTGGATGAAAAACCTAATCTGCCAGGGTTTAAAGTTAAACACAttaatcttctgtgcctccatttctatctattcaatgggctaaatcggaacacttaggttttacaaagtttaaatgagcagtgcaggaaaagcgtggag-ccaatgcctgtcatatactaattggtcaacaCGCATGAGCTCCTATCAGCGTCAGGGCCTCCAGCATTTCCATCAGGCTTTGGTCTTTGAAATGTCCTTCTTGATATGAATGGATCGTTCTTCAAAcattctctaactgatggccatgaaattgctccagtgtggattatta---caaatacaactgcagggaccagactgacacatgcatctgtcgtgcatcgcttgtctatttctctatagacacctggagatggaatcgtgagaccagagtatttatacatttctgattttgctaatttctgtctaaattac-----------------tgggaagagaagatataacaagtcatacttttaacattttatgagaattcttttttttctccatcttc-tggccaaaactggg---------AAGTACTTGCCTACCATTTGCTCTGAACTTACTTTTGCCAACGTTTCTGTAGTCATACAGTGGGATCACATTGTATGCGTGACATCAAACTCAAATCCTTAAAGGAAAAGAAGGATTAACATGACTGTATAAAAATTTATATTCAAAatacaatgaatgcaaatatatatatgtatataaatacatatatacacacatacatatatGGGAAAGGAATTTTTTTATTT---GGATACTTTAGCAAAGTTATATATACTTGAAAATTTGTTTAATAAAACAGCAGTCTCCTTGTGTACTCCCA-GAGTTTCATCACAT-GAAGCAATTAtttggttatttatctcc-ttatgtctaaacagatattataacatttttgattttcaagtttaggcactatctctccttcacattcttgctcatcatcaccccc-cacccaaacatgcctctc--attaccttaccctctaacatgtttgtgtcctagtttgctggg-tcaattactacattgttataact-tgtacattttattcagagttcagtcaCATTGGATATACATAGCAGGAATGAAAGGCCAGTATCTTCAGGTACTCTCTCTCAAGTGGATAAGCTTCAG-AGATTTTTGTAATCTTTGGTCACCCTCCT---CGTCTTTTTCCTATTCCAGGTAAGTACTGGATCTGATGGGCCCAGCTGAGGTCAGGCACTCACTCCTTTGAGGAGGGGAGAGCAGGACATCTTCATGTGTAGTACCAGGAAGATACTGTCTAAAGAGGGACAGGTAGTTCTAAGACAGAAA--AGTCAATCTGGGGTACGGGTAGGCAAAACGAGGACACGAA---AAGAAAAGGTGTCTGTTCTGTGAGGGGAGCATGCAGTAGAGGGTGGATTCAGAGT-GGGAGGG------------------------------------GAGAGTTTTGAGAGATATGGGCCATGGATATTCCTCTGTGGGCTGGAGCCACACAAGACTCTTGGGGTCTCTCAGGGGCAGGGAGCTGAAGAGAATCTGCCCTCCCCAACCGG-GGAGACTGGTGAGGGGATTGTCCTGTTCACCAGACAGAAATGGGGTCTGGGCCAGGGCAGTTCTGGTGGG-AAAGAAAGAACAGGACATCTTCTCCTT-----AAGGTAAGGTCCTGAGTTCAGGTCTTGCTAGGGAGGGAGGTTACCTTGGGCATTGGCAGCTGAAGATGGTTGGCCAGATGAGGGCA-TG-AATCTATGTACTATAAACTTGTAGTTCTAGTAAAAGAAT
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     30343 1905 +     54187 CTCCTTGTCTCTTGTC--TATTTTCCAACGTGTCTCTTTGTTGCTTGGGGC-AAAAAAACTCCATTTTTAATCTTCCCCCAACAAGCATCTTCC----CTTATCGTG---TTTCGGGTTTTGA--------G--------TTTGTTTCCTCAGCTGCTCATATATGGAACACTGGAAATTTCTAAAATGGAGAATGACAGAACCTGAGTCACACCTCTGGTGAAGCCACAGACTCTGGGGGAGAAATCTAATCTGCCAGGGTTTAAAGTTAAACACATGAATTTTTTGTGCCTCCATTTCTA--TGTCAAATGCACTAAACCAGAATACTCAGGTTGCCCAATGTttaaatgagctgtgcaggaaaagcgtggagcccaatgcctgtcacatagcaattgttcaatacacatgagctcCTCTCAGCGCCATTGCCGCCAGCATTTCCATCAGGCTTTGATCTTTAAAACATCCTTCTTGATACAAGTGGATCATTCTTCAAATTttctctaactgatggccgtggaattgctccaatgtgtattatta---caaacacagctgcagggatcagactgacacatacatctgtcgtgcatcccctgtctacttctctgcagatacctggaaatggaatggccagatcaaggtatttatacatttcagattttgctaat---tgcccaaattac-----------------tgtggaaagacgatataacaagtcacattgttaacattttgtgagaatactttc-tatctccttcttc-tggcccaaactggg---------taGTA-TTGCCTACCATTTCCTCTGAGCTT-CCTTTGCCAACATTTCTGTAGTCATTCGGTGGGGACATGTGTTATGCATGACATCAAACTCAAATCCTTAAAGGAAAAGAGGGATTAACATGACTGTAC--AAATTTATATTCAAAATACGATGAATAGAAATATATATGTGGATGTAAATGTATACACA-------AAATATATGGCAAA--ATGTTTTTTATTT--AGGATACTTCATCAAAGTTACATATACTTCAAAATTTGTTTAGTAAAACAGCAGGCCCCATGTGT------------------ACAT--------------AATTATTCAGCTCC-TTATCTCTAAATAGCTATTATTAG-TCTTTGCTTTCTGAGGTTAGGCCCTATCTCTCCTTCAAATACTCGCTCATCACCACCACC---CCCAAACACACCTCTC--AACACCTCACCCTCTAACATGTTCGTGTCCTGGTTTGCTGAG-TCAATTACTACATTATTATAACT-TGTACATTTTATTCAGAGCTCAGTCACATTGGATATACACAGCAGGAATGAAGGACCAGTATCTTCCGGGTCTCTCTCTCAAGTGGACGAGCTTCAG-AGATTCATGTAGTCTTTGGCCACCCTGCC---TGTCGT----CTATTCCAGGTAAGTACTGGATAGGAT-GGCCCAGCTCAGATCAGGCACTCTCTCC-GTGAGCAGGGGAGGGCGGGACATCTTCATGTGCAGTAGCAGAAAGACACTGTCCACAGAGGGACAGGCAGTTCTACAAAAGAAA--GGTCAGTCTGGGGCATGGGCAGGCAAACCGAGGATGTGAA---GAAAA-CAGTATCTGCTCTGTGAGGGGAACATGCAGTAGAGGATGGATTCAGAGT-GGGAGGA-----------------------------------AGAGAGTTTTTGGAAATATGGGCCGTGGATATTCCTGTGTGAGCTGGAGCCACACGAGACTGTTAGGTACTT------ACAGGGAGCTTTGGAGAATCTGCACTCCTTAACCTG-GGAGACAGGTGAGGGGACTGTCCTGGTCACCAGACAGAGATAGGGTCTGGTCCA-AGCAGTTCTGATGGG-AAAGAAATGACAGGACATCTTCTCCTT-----AAGGTAAGGTCCTGAGTTCAGGTCTTGGTAGGAAGGGAGGCTGCCTTGGGCATTGGCAGCTGCAGATAGTTGGCCAGATGAGGGCACTGAAATCTAGGTGCTATCACCTTGTGGTTCTAGTAAAAGAAT
i calJac3.chr18_GL285785_random I 141 I 305
s tarSyr2.KE940080v1                19657 1932 +     35544 TTTCCTATCTCAAGGCATTATTTCCCAGGGTAACTCTTCATTGTTTGGGGA-GAAAAA----TATTTGTAATTCACACCCAACAAACATCTTCCC-CACATTTCCTGATCTT--GGGTTTTTC------TTG----------------TTCAGCTCCCCATTCTTGGAATACCAGAAATTCCTTAAATGGAGAAT---AGAACCCGCATCACAactgtggtatagctacagtctctgggtgagaagcc-aatctgccagggtctgaagttaaacaaatgaattttctgtgcctccatttttccatgtaaattgggctatataagagtacttaggttgaccaatgtttaaatgagatgtgcaggtaaagcacagac-ccaatgtctgtcatgtagttatggttcaaATCACATTAGCTCTTAATAGTGCCTTTGCC---------TCTATTCGATGTTGTTTTTTTAAATACCCTTCCTGACATAACTGGATCATTATACAAACAGTGTATCACAGATAATCATGAAACTGGTCCAGTGTGTCTTATTA---CAAATACAACTGCAGGGACTAGGCTTAAACAGATATCTGTCATTCATCACTTGTGTA-TTCTCTTTAGATACCTGGAAATGGAATT-----ACCACTGTTTTTGCACTTTTCTGATTTTATTAATTTCTGCCTAAATTTCTTTCTGCCTAAACTTTTTTTGAACAGAAGATATAGTTAGTCATATTTTTAGGATTTTATGAGAATACATTTTTTTCTCCATTCTCATGGC--AAACTGTA---------TTGTACTTGCCGCTCATTTTTTTAGAACTTGATTCTACCAACATTTCGATACTCTTACAGTGAGGAGATGTTCTAGGCATGACACTAAACTGAAATTCTCAAATGAAAAGAGTGATTAATATGATTATA---AAAATTGTATTAAAAATACAGATGATG-AAACTtaaatttatatatgtatataaatatacactcacaaatatatGGCAAAATAATTATCTTATATTTGGGATATTTTATCAAAGCTATATGTACTTTCAAATTTGTTTA--AAAAAAACAAGTCATCGATGCACTTCCACAAATATCATGCTATATAACCAATTAT----TTATGTATCTCC-TCAT---TAAATAAGTATTAATAC-ATTTTGATTTTCCAGTTTAGGTACTTTCTGTTTTTCACATAGTTGCTCATCACCACCTCCACACACAAACAAGCCTCTCAAATTACATTTTCCTCCAATATGTTTGTATCCCTGTTTGGTGGGTTCAATTA------TATTATAACTGTGTAAATTTTATACAGAGTTCAGTCACATTTAATATACACAGCAGAAACAAAAGAGCAGTATCTTCAGGGACTCT-------------AAGATACAG-CAATTCGTTCAATCTTTGGTCACCCATCCATGTATATCTTTTTTATTCCAGGTAAATACT-AATCTGAATGGCACAGCTCAAGTCAGGCACCCTCTCC-CTGAGCAGGTGAGGATGGGACATCTTTATAAACAATACCAGGAAAACGCTGTCCAAAAAGGGAGAGAGAGTTTCAAGAAAGAAATGAGCAAAT------TATTGGTAGGAAAAATGAAGATGAGAA---GAAGA-TCATGTCAGTTATTTGATGAAAATATATA-TGAAGGTTGGATTTGGAGTAAGGAGAA------------------------------------AAGAGTTTGGGGAAATAAAAGCCATGGCTATTCCTATAT-----AGAACCACATACAAATGTTGGGGGCTCACAGGGGCTGGGAGCTGAGGAAAATCTGTCCTTTACAACTTGAGGAGATTGGTAAGAGGACTGTCCTGGTCACCAGACAGAGATGAGGCTTGAGCTAGGGCAGTTATGATGGGCAAAGAAAGGAGAGGCCCTCTTCTCCTTGAGTCAGGGGAAGATCTTGAGGTCAGATCTTGATGGGGAGTGAAGCTTTCCTGGCTGTTGGCAGCTGGA---AGTTTTCCAGATAAGGGTTCTCAAATCTATGTACTATGAACTTGTAGTTTTA-TCTATCAAT
i tarSyr2.KE940080v1            C 0 C 0

a score=17012.000000
s hg38.chr1_KI270714v1_random        5059 8 +     41717 GACAGCAG
s panTro4.chr1                  114676189 8 - 228333871 GACAGCAG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122602669 8 - 229942017 GACTGCAG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57117091 8 + 109391073 GACTGCAG
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106279358 8 + 227556264 AGCTGCAG
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121871674 8 + 220367699 AGCTGCAG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13358349 8 + 130588469 AGCTGCAG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             3506 8 -     10218 AGCTGCAG
i rhiRox1.JABR01021417v1        C 0 C 0
s tarSyr2.KE940080v1                21589 8 +     35544 AGCTTTAG
i tarSyr2.KE940080v1            C 0 C 0
e calJac3.chr18_GL285785_random     32248 305 +     54187 I

a score=878023.000000
s hg38.chr1_KI270714v1_random        5067 261 +     41717 -TAAAGGGTCTTTAGGAAGAGGAGGTGGAAGACCTGATTTG--GGTT-GGGGGCTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGAAGCCTGCTACACAACCTCCCTGGTCCCCTTGCTCAGTCTCCTGGCCAGAC--------------CCCTGTGAGCCCTGGAAGTGCACAGTCAGCTTAGCCAAGGCATCTCCAGCCAGGACTCATCCCTGGGCATTTCTGTGGCCTTGGGTGCCCT-GGC---CTCCAGGCCCTGTCTTGCAGGCAATCGTCCTGCAAG
s panTro4.chr1                  114676197 264 - 228333871 -TAAAGGGTCTTTAGGAAGAGGAGGTGGAAGACCTGATTTG--GGTT-GGGGGCTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGAAGCCTGCTACACAACCTTCCTGGTCCCCTTCCTTAGTCTCCTGGCCAGAC--------------CCCTGTGAGCCCTGAAACTGCACCGTCAGCTCAGCCAAGGCATCTCCAGCTGGGACTCATCCCTGGGCATTTCTGTGGCCTTGGGTTCCCC-GGCCTTCTCCAGGCCCTGTCTTGCAGGCAATCATCCTGCAAG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122602677 265 - 229942017 -TAAAGGGTCTTTAGGAAGAGGAGGTGGAAGACCTGATTTG--GGTT-GGGGGCTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGCAGCCTGCTACACAACCTCCCTGGTCCCTTTGCTCAGTCTCCTGGCCAGAC--------------CCCTGTGAGCCCTGGAAGTGCACAGTCAGCTCAACCAAGGCATCTCCATCTGGGACTCATCCCTGGACATTTATGTGGCCTTGGGTGCCCCTGGCCTCCTCCAGGCCCTGTCTTGCAGGCAATCATCCTGCAAG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57117099 263 + 109391073 -TAAAGGGTCTTTAGGAAGAGGAGGTGGAAGACCTGATTTG--GGTT-GGGGGCTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGAAGCCTGCTGCACAACCTCCCTGGTCCCCTTGCTCAGTCTCCTGGCCAGAC--------------CCCTGTGAGCCCTGGAAGTA-ACAGTCAGCTCAGCCAAGGCATCTCCAGCCGGGACTCATCCCTGGGCATTTCTGTGGCCTTGGGTGCCCT-GGCCTTCTCCAGGCCCTGTCTTGCAGGCAATCATCCTGCAAG
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106279366 277 + 227556264 -TAAAGGGTCTTTAGGAAGAGGAGGTGGAAGACTTGATTTT--GGTT--GGGGGTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGAAGCCTTCTGCATAACCTCCCTGGTCCCCTTGCTCAGTCTCCTGGCCAGACCCCCAGAGTCCCTGCCCTGTGTGCCCTGGAAGTGCACAGTCAGCTCAGCCAAGGCATCTCCAGCCGGGACTCATCCCTGGGCATTTCTGCGGCCTTGGGTGCCCT-GGCCTTCTCCAGGCCCTGTCTTGCAGCCAATTGGCCTGCAAG
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121871682 277 + 220367699 -TATAGGGTCTTTAGGAAGAGGAGGTGGAAGACTTGATTTT--GGTT--GGGGCTCC-AAGAAGAATGTCtgccttgctgtgcagaagccttcaGCATAACCTCCCTGGTCCCCTTGCTCAGTCTCCTGGCCAGACCCCCAGAGTCCCTGCCCTGTGTGCCCTGGAAGTGCACAGTCAGCTCAGCCAAGGCATCTCCAGCCGGGACTCATGCCTGGGCATTTCTGTGGCCTTGGGTGCCCT-GGCCTTCTCCAGGCCCTGTCCTGTAGCCAATCGGCCTGCAAG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13358357 278 + 130588469 -TAAAGGGTCTTTAGGAAGAGGAGGTGAAAGACTTGATTTG--GGTT-GGGGGCTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGAAGCCTTCTGCATAACCTCTCTGGTCCCCTTGCTCAGTCTCCTGGCTAGACCCCCAGAGTCCCTGCCCTGTGTGCCCTGGAAGTGCACAGTCAGCTCAGCCAAGGCATCTCCAGCCGGGACTCATCCCTGGGCACTTCTGTGGCCTTGGGTGCCCT-GGCCTTCTCCAGGCCCTGTCCTGTAGCCAATTGGCCTGCAAG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             3514 279 -     10218 -TAAAGGGTCTTTAGGAAGAGGAGGTGGAAGACTTGAGTTT--GGTTGGGGGAGTCC-AAGAAGAATGTCTGCCTTGCTGTGCAGAAGCCTTCTGCATAACCTCCCTGGTCCCCTTGCTCAGTCTCCTGGCCAGACTCCCAGAGTCCCTGCCCTGTGTGCCCTGGAAGTGCACAGTCAGCTCAGCCAAGGCATTTGCAGCTGGGACTCATCCCTGGGCATTTCTGTGGCCTTGGGTGCCCT-GGCCTTCTCCAGGCCCTGTCTTGCAGGCAATCGTCTTGCAAG
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     32553 275 +     54187 -TGAAGGGTTCTTAGGAAGAGGAGGTGGATGGCCTGACTTG--GGGT-GGGGGCTCC-AAGAGGAGTGTCTGCGGTGCTGTACAGAAGCCTGCTGCTCAACCT-CCTGGTTCTCTTGCTCAGTCTCCTGGCCAGATTCCCAGAGTCCCTGCCCTGTGTGCCCTGGAA--GCTCAGTCAGATGAGCCAAAGCATCTCCAGCTGGGACTCATCCCTGGGCATTTTTGTGGCTTTGGGCGCCCT-GGGCTTCTCCAGGCCTTGTCCTGCAAGCAACTGTCTTGCAGG
i calJac3.chr18_GL285785_random I 305 I 1
s tarSyr2.KE940080v1                21597 273 +     35544 TAAAAAGATCCTTAGGGAAAGGAGGTAGAAGACCCGACTGGACAGTT-GAGGGTTCCAAAGAGAAACGTCTGCATTGCTGTGCAGAAACCTGTTGGTTACCCTGACTGTTCCCCTTGCTCACTCTCCTTGCCTGACTCCCAGAGT-----CTCT----GCCCTAGAAGTGCACATTCAGCTCAGCGATGGCATCTTCATCCAGGACTAGTCTTTGGGTATCTTTGGGGCTTTGGGTGCCCT-AGTCTTCTCCAAGCCCTGTCCTGCAAGCAGTCATCATGTGAG
i tarSyr2.KE940080v1            C 0 C 0

a score=894.000000
s hg38.chr1_KI270714v1_random        5328 1 +     41717 C
s panTro4.chr1                  114676461 1 - 228333871 G
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122602942 1 - 229942017 G
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57117362 1 + 109391073 G
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106279643 1 + 227556264 G
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121871959 1 + 220367699 G
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13358635 1 + 130588469 G
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             3793 1 -     10218 G
i rhiRox1.JABR01021417v1        C 0 C 0
s tarSyr2.KE940080v1                21870 1 +     35544 A
i tarSyr2.KE940080v1            C 0 C 0
e calJac3.chr18_GL285785_random     32828 1 +     54187 I

a score=3471669.000000
s hg38.chr1_KI270714v1_random        5329 1128 +     41717 -GAAG--GGGGAAGGGAGGCTACTTGACAGTTAACTCTGAGTGGCTCCACAAGGTCCTGACTTAGCTCCTAGTCACTTGCAAGCCTATATACCCCCATCTCATCCCCCAAACGATGAAAAGAAACTTTG-CAGGACTCATGCCAGACAA----ATAGGGTGGGACCATTCTGTAGAGCCAAGTTCTCAGGACATCAATAAGAGATGGAAACCACCTGCTGGAAGGTGCCACAGTGGGAACCTTGGGGTCAGGGAGCAGTCACTGAACTGTCAGGGTGAAT-CCTGGCTCCTGGccctcacacaccctttctcc-ccctccctccttctctcctccctcctgtctgctctttcccctctctctcctgaatccctcAGGTACCTTCCCATGGGCCCTCACCCG-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGTAACCTT-GGGCATTTCCAAAACTGGAGAGACTTGACCACAGCATTTTT-ATGAGCTAGGAAAGTCCTCCAGAGCTCTTGCCTAAATTTTTCTGCTGATGAGAAGAGAAC--AAGAGTTTCCATCTGATCTGGTCCTAAGGCAACTTCTCTTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGGTTGCCCAGGGCCCCGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTCCCCTTCACTGCGGGAG--GCTGGCCAGGGATCAGGAGCCTCTGTTCTCCACAGATGCTGGGATTCCAGGCTCAAATCTAAATATTGGCTGATTTAGGAGGCTAAGGGAGGCAATTCCCTGGAGGGAGGTGTCAGGATTTGGGACAAGAGCAGCATCTAGTTGTCATCCACAGAGACCCCAAGAACAGAAATCCACTGGTAGCCGGTT--GGAGGGGATCCCATGAAAACAAGATGAAACGCGCGC-ATTAGTACCGGACCCAAGATCAGGAGATGAAAAACTGCACTGTCCTAAGGGATGAAAGAATTAGGGAATCCTGGAAGTAAAATTTTTCATATAGGTCA-TTTCTTCCAAAGAGACATAGGGCAATGGCCCAATGACGTGAACAAAAGAAAACTCGGGGTCTAGGATTGAGGGGAGGCAGCATTTTTAGT---GGAGACCTGTGACCTGGAGGCCCAGG-GTCACCCTGAGAGGGG
s panTro4.chr1                  114676462 1127 - 228333871 -GAAG--GGGGAAAGGAGGCTACCTGACAGTTAACTCTGAGTGGCTTCACAAGGTCCTGACTTAGCTCCTAGTCACTTGCAAACCTATATACCCCCATTTCATCCCCCAAACGATGAAAAGAAACTTTG-CAGGACTCATGCCAGACAA----ATAGGGTGGGACCATTCTGTAGAGCCAAGTTCTCAGGACATCAATAAGGGATGGAAACCACCTGCTGGAAGGTGCCACAGTGGGAACCTTGGGGTCAGGGAGCAGTCACTGAACTGTCAGGGTGAAT-CCTGGCTCCTGGccctcacacaccctttctcc-ccctccctccttctatcctccctcctgtctgctctttcccctctctcccctgcatccctcAGGTACCTT-CCATGGGCCCTGACCCC-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGTAACCTT-GGACATTTCCAAAACTGGAGAGACTTGACCACAGCATTTTT-ATGAGCTAGGAAGGTCGTCCAGAGCTCTTGCCTAAATTTTTCTGCTGATGAGAAGAGAAC--AAGAGTTTCCATCTGATCTGGTCCTAAGGCAACTTCTCCTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGGTTGCCCAGGGCCCTGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTCCCCTTCACTGCAGGAG--GCTGGCCAGGGATCAGGAACCTCTGTTCTCCACAGATGCTGGGATCTCAAGTTCAAATCTAAATATTGGCTGATTTAGGAGGCTAAGGGAGGCAATTCCCTGGAGGGAGGTGTCAGGATTTGGGACAAGAGCAGCATCTAGTTGCTGTCCACAGAGACCCCAAGGACAGGAATCCACTGGTAGCTGGTT--GGAGGGGATCCCATGAAAACAAAATCAAACGCGCGC-TTTAGTACTGGACCCAAGATCAGGAGATGAAAAACTGCACTGTCCTAAGGGATGAAGGAATTAGGGAATCCTGGAAGTAAATCTTTTCATATAGGTCA-TTTCTTCCAAAGAGACATAGGGCAATGGCCCAATGACGTGAACAAAAGAAAACTCGGGGTCTAGGATTGAGGGGAGGCAGCCTTTTTAGT---GGAGACCTGTGACCTGGAGGCCCAGG-GTCACCCCGACAGGGG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122602943 1125 - 229942017 -GATG--GGAGGAAGGAGGCTACCTGACAGTTAACTCTGAGCAGCTCCACAAGGTTCTGACTTAGCTACTAGTCACTTGCAAACCTATATACCCCCATCTCATCCCCCAAGCAATGAAAGGAAACTTTG-CAGGACTCATGCCAGACAA----ATAGAGTGGGAACATTCTGTAGAGCCAAGTTCTCAGGACATCAATAAGAGATGGAAACCACCTGCTGGAAGGTGCCATAGTGGGAACCTTGGGGTCAGGGAGCAGTCACTAAACTGTCAGAGTGAAT-CCTGGCTCCTGGccctcacacaccctttctcc-ccctccctccttctctcctccctcctgt---ctctttccccttcctcccatgcatccctcAGGTACCTT-CCATGGGCCCCAACCCC-TTCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGTAACCTT-GGACATTTGCAAACCTGGAGAGACTTGGCCACACCATTTTT-ATGAGCTAGGAAGGTCCTCCAGAGCTCTTGCCTAAATTTTTCTGCTGATGAGAAGAGAAC--AAGAGTTTCCATCTGATCTGGTCCTAAGGTAACTTCTCCTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGGCTACCCAGGGCCCTGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTCCCCTTCACTGTGGGAG-AGCTGGCCAGGGATCAGGAACCTCTGTTCTCCAAAGATGCTGGGATCCCAGGTTCAAATCTAAATATTGGCTGATTTAGGAGGCTAAGAGAGGCAATTCCCTGGAGAGAGGTGTCAGGATTTGGGACAAGAGCAGCATCTAGTTGCCATCCACAGAGACCCCAAGGACAGGAATCCACTGGTAGCTGGTT--GGAGGGGATCCCATGAAAACAAAATGAAACGCATGC-ATTAGTACTGGACCCAAGATCAGGAGATGAAAAACTGCACTGTCCTAAGGGATGAAGGAATTAGGAAATCCCGGAAGAAAAGTTTTTCATATAGGTAA-TTTCTTCCAAAGAGACACAGGGCAATGGCCCAATGACGTGAACAAAAGAAAACTCGGGGTCTAGGATTGAGGGGAGGCAGCCTTTTTAGT---GGAGAACTGTCACCTGGAGGCCCAGG-GTCACCCTGAGAGGTG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57117363 1134 + 109391073 -GAAG--GAGGGAAGGAGGCTACTTGACAGTTAATGCTGAGCAGCTCCACAAGGTCCTGACTTAGCTTCTAGTCACTTGCAAACCTATATACCCCCATCTCATCCCCCAAACAATGAAAAGAAACTTTGCCAGGACTCATGCCAGACAA----ATAGGGTGGGACCATTCTGTAGAGATGAGTTCTCAGGACATCAATAAGAGATGGAAACCACCTGCTGGAAGGTGCCACAGTGGGAAACTTGGGGACAGGGAGCAGTCACTGAACTGTCAGGGTGAAT-CCTGGCTCCTGGccctcacacaccctttctcc-ccctccctccttctctcctccctcctgtctgctctttcccctccctcccctgcatccctcAGGTACCTT-CTGTGGGCCCTGACCCC-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACA-------------------------TGGTAACCTT-GGACATTTCCAAAACTGGAGAGATTTGGCCACACCATTTTT-ATGAGCTAGGAAGGTCCTCCAGATCTCTTGCCTAAAATTTTCTGTTGATGAGAAGAGAACAAAAGAGTTTTCATCTGATCTGGTCCTAAGGCAACTTCTCCTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGATTGCCCAGGGCCCTGGACTTGCCCCTCCAAGCTGCTCTGCTCTGCTCCCCTTCACTGCCAGAG-AGCTGGTCAGGGATCAGGAACCTCTGTTCTTCACAGATGCTGGGATCCCAGGCTCAAATCTAAATATTGTCTGATGTAGGAGGCTAAGGGAGGCAATTCCCTGGAGAGAGGTGTCAGGATTTGGGACAAGAGCAGCATCTAGTTGCCGTCCACAGAGACCCCAAGGACAGGAATCCACTGGTAGCCGGTT--GGAGGGGATCCCATGAAAACAAAATGAAATGTGCGC-GTTAGTACTGGACCCAAGATCAGGAGGTGAAAGACTGCACTGTCCTAAGGGATGAAGGAATTAGGGAATCCTGGAAGTAAAGTTTTTCATATAGGTCA-TTTCTTCCAAAGAGACACAGGGCAGTGGCCCAATGACGTGAGTAAAAGAAAACTTGGGATCTAGGATTGAGGGGAGGCAGCCTTTTTAGTGGAGGAGACCTGTAACCTGGAGGCCCACG-GTCACCCTGAGAGGGG
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106279644 1120 + 227556264 -GAAG--GGCGAAAGGAGGCTACTTGACAGTTAACTCTGAGTGGCTGCACAAAGCCCTGACTTAGCTCCTAGTCACTTGCAAACCTATATACCCCCATCTCATCCCCCAAACGATGAAAAGAAACTTTGCCGGGACTCATGCCAA--------ATAGGGTGGGACCGTTCCGTAGAGCCGAGTTCTTAGGACACCAATAAGAGATGGAAACCACCTGCTGGAAGGTGCCACAGTGGGAACCTTGGGGGCAGGGAGCAGTCACTGAACCATCAGGGTGAAT-CCTGGTTCCTGGCCCCCATACACCCTTTCTCC-ccctccctccttctctcctccctcatatctgctctttctcctctctcccctgcatccctcAGGTACCTT-CTATGGGCCCTCACCCC-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGTAACCTT-GGACATTTCCAGAACTGGAGAGATTTGGCCACACCATTTTT-ATGAGCTAGGAAGGTCCACCAGAGCTCTTGCCTAAATTTTTCTGC---TGAGAAGAGAACAAAAGAGTTCTTATCTGATCTGGTCCTAAGGCAACTTCTCCTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGGTTGCCCAGGGCCCTGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTGCCCTTCACTGCGGGAG-AGCTGGCCAGGGATCAGGAACCTCTGTTCTCCACAGATGCTGGGATCCCAGGCTCAAATCTAAATAGTGGCTGATTTAGGAGGCTAAGGGAGGCAATTCATTGGAGAG-------AGGATTTGGGACAAGAGCAGGATCTAGTGTCCGTCCACAGAGACCCCAAGGACAGGAATCCACTGGCAGCTGGTT--GGAGGGGATCCCATGAAAACAAAATGAAACGCACAC-ATTCGTACTGGACCCAAGATCAGGAGATTAAAAACTGTGCCGTCCTCAGGGATGAAGGGATTAGGGAATCCTGGAAGTAAAGTTTTTCATATGGGTCA-TTTCTTCCAAAGAGACACAGGGCAGCAGCCCAATGACATGAGTAAAAGAAAACTCAGGGTCTAGGATTGAGGGGAGGCAGCCTTTTTAGTGGAGGAGACCTGTCACCTGGAGGCCCAGG-GTCACCCTGAGAAGGG
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121871960 1127 + 220367699 -GAAG--GGGGGAAGGAGGCTACTTGACAGTTAACTCTGAGTGGCTCCACAAGGTCCTGACTTAGCTCCTAGTCATTTGCAAACCTATATACCCCCATCTCATCCCCCAAACGATGAAAAGAAACTTTGCCGGGACTCATGCCAA--------ATAGGGTGGGACCGTTCCGTAGAGCCGAGTTCTTAGGACATCAATAAGAGATGGAAACCACCTGCTGGAAGGTGCCACAGTGGGAACCTTGGGGGCAGGGAGCAGTCACTGAACCATCAGGGTGAAt-cctggttcctggcccccacataccctttctcc-ccctccctccttctctcctcccttctgtctgctctttcccctctctcccctgcatccctcAGGTACCTT-CCATGGGCCCTCAACCT-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGAAACCTT-GGACATTTCCAAAACTGGAGAGATTTGGCCACACCATTTTT-ATGAGCTAGGAAGGTCCTCCAGAGCGCTTGCCTAAATTTTTCTGC---TGAGAAGAGAACAAAAGAGTTCTCATCTGATCTGGTCCTAAGGCAACTTCTCCTTG-----------------AAGCAGAGTCTGGGCAGGAAGAAGGGGGTTGCCCAGGGCCCTGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTGCCCTTCACTGCAGGAG-AGCTGGCCAGGGATCAGGAACCTCTGTTCTCCACAGATGCTGGGATCCCAGGCTCAAATCTAAATATTGGCTGATTTAGGAGGCTAAGGGAGGCAATTTGTTGGAGAGAGGTGTCAGGATTTGGGACAGGAGCAGGATCTAGTTGCCGTCCACAGAGACCCCAAGGACAGGAATCCACTGGCAGCTGGTT--GGAGGGGATcccatgaaaacaaaatgaaatgcacGC-ATTCATACTGGCTCCAAGATCAGGAGATGAAAAACTGTGCCGTCCTAAACGATGAAGGAATTAGGGAATCCCGGAAGTAAAGTTTTTCATATGGGTCA-TTTCTTCCTAAGAGACACAGGGCAGCGGCCCAATAACGTCAGTaaaaaaaaaCTTGGGGTCTAGGATTGAGGGGAGGCGGCCTTTTTAGTGGAGGAGACCTGTCACCTGGAGGCCCAGG-GTCACCCTGAGAGGGG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13358636 1135 + 130588469 -GAAA--GGGGGAAGGAGGCTACTTGACCGTTAACTCTGAGCAGCTCCACAAGGTCCTGACTTAGCTCCTAGTCACTTGCAAACTTATATACCCCCATGTCATCCCCAAAACGATGAAAAGAAACTTTGCTGGGACTCATGCCAAATAGGGTGATAGGGTGGGACCGTTCCGTAGAGCTGAGTTCTTAGGACATCAATAAGAGATGGAAACCACCTGCTGGAAGATGCCACAGTGGGAACCTTGGGGGCAAGGAGCAGTCACTGAACTCTCAGGGTGAAT-CCTGGCTCCTGGCCCCCACACACCCTTTCTCC-CCCTCCCTCCTTCTCTCCTCCCTCCTATCTGCTCTTTCCCCTCTCTCCCCTGCATCCCTCAGGTACCTT-CTATGGGCCCTCACCCC-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGAAACCTT-GGACATTTCCAGAACTGGAGAGATTTGGCCACACCATTTTT-ATGAGCTAGGAAGGTCCACCAGAGCTCTTGCCTAAATTTTTCTGC---TGAGAAGAGAACAAAAGAGTTCTCATCTGATCTGGTCCTAAGGCAACTTCTCCTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGGTTGCCCAGGGCCCTGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTGCCCTTCACTGCGGGAG-AGCTGGCCAGGGATCAGGAACCGCTGTTCTCCACAGATGCTGGGATCCCAGGCTCAAATCTAAATATTGGCTGATTTAGGAGGCTAAGGGAGGCAATTTGTTGGAGAGAGGTATCAGGATTTGGGACAAGAGTAGGATCTAGTTGCCGTCCACAGACACCCCAAGGACAGGAATCCACTGGCAGCTGGTT--GGAGGGGATCCCATGAAAACAAAATGAAACGCACAC-ATTCGTACTGGACCCAAGGTCAGGAGGTTAAAAACTGTGCCATCCTAAGCGATGAAGGAATTTGGGCATCCCAGAAGTAAAGTTTTTCATATGGGTCA-TTTCTTCTGAAGAGACACAGGGCAGCGGCCCAATGACGTGAGTAAAAGAAAACTTGGGGTCTAGGATTGAGGGGAGGCAGCCTTTTTAGTGGAGGAGACCTGTCACCTGGAGGCCCAGG-GTCACCCTGAGAAGGG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             3794 1129 -     10218 -GAAG--TGGGGAAGGAGGCTACTTGACAGTTAACTCTGAGCAGCTCCATAAGGTCCTAATTTAGCTCCTAGTCATTTGCAAACCTATATACCCCCATCTCATCCCCAAAATGATGAAAAGAAACTTTGCCAGGACTCATGCCAGACAA----ATAGGGTGGGACCGTTCCATAGAGCTGAGTTCTTAGGACATCAATAAGAGATGGAAACCACCTGCTGGAAGGTGCCACAGTGGGAACCTTGGGGGCAGGGAGCAGTCACTGAACTGTCAGGGTGAAT-CCTGGCTCCTGGCCCACACACACCCTTTCTCC-ccctccctccttctcttctccctcctgtctgctctttcccctctctcccctgcatccctcAGGTACCTT-CCATGGGCCCTCACCCC-TCCTTTTCAGAGGCTCCAAAGTGAGCCCTCAAAACACT-------------------------TGGTAACCTT-GGACATTTCCAGAACTGGAGAGATTTGGCCACACCATTTTT-ATGAGCTAGGAAGGTCCTCCAGAGCGCTTGCCTAAATTTTTCTGC---TGAGAAGAGAACAAAAGAGTTCTCATCTGATCTGGTCCTCAGGCAACTTCTCCTTG-----------------GAGCAGAGTCTGGGCAGGAAGAAGGGGGTTGCCCAGGGCCCTGGACTTGCCCCTCCCAGCTGCTCTGCTCCTCTCCCCTTCACTGCGGGAG-AGCTGGCCAGGGATCAGGAACCTCTGTTCTCCACAGATGCTGGGATCCCAGGCTCAAATCTAAATATTGGCTGATTTAAGAGGCTAAGGGAGGCAATTCATTGGAGAGAGGTGTCAGGATTTGGGACAAGAGCAGGATCTAGTTGCCGTC--CAGAGACTCCAAGGACAGGAATCCACTGGCAGCTGGTT--GGAGGGGATCCCATGAAAACAAAATGAAACACAGAC-ATTCGTACTGGACCCAAGGTCAGGAGGTTAAAAACTGTGTGGTCCTAAGCAATGAAGGGATTAGGGCATCCTGGAAGGAAAGTTTTTCATATGGGTCA-TTTCTTCCTAAGAGACACAGGGCAGTGGCCCAATGACGTGAGCAAAAGAAAACTCGGGGTCTGGGATTGAGGGGAGGCAGCCTTTTTAGTGGAGGAGACCTGTCACCTGGAGGCCCAGG-GTCACCCAGAGAAGGG
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     32829 1077 +     54187 -GGAGTCAGGAGAAGGAGGCTACTTGTCACTTAACTGTGGGGGAC--CACAAGGTCCTGACTTGGGTCCTAGTCACTTGCTAACCTATGCATCCCCATCCTATCCCCCAAATGATGAAAAGAAACTTTGCCAGGAGTCACACCAGACAA----ATAGGATGGGGCCTTTCTATAGAGTCTAGTTCTTAGGCCACCAATAAGAGATGGAAACCACCTGCAGGAAGGTGCCACGGTGGGAACCTGGGTGGCAGGTAGCAGTCACTCAACTGTCAGGATGAAT-CCTGGT-------CCTCACACACCCTTTCTCCTCCCCCCCTCCTTGTCTTTTTTCTCCTGTCTGCTCTTTCCCCTC----------------------CTTT-C--------------------------------CCAAA-------CTCAAAACACT-------------------------TGGTAAGCTTGGGACAGTTTCAGAACTGGAGAGATTTGGCCACGACATTTGT--CAGGCTAGGAAGGTCCCCCAGAACTATTGCCTAATTTTTTGTGTTGATTAGAAGAGAACAAAAAAGTTTCCATCTGATCTGGTCCTAAG------TCTCCTTGAGTCTGGGCAGGAAGCAGAGCAGAGTCTTGGCAGGAAGGAGGAGGATGCCCAGGGTCCTGGACTTGCCCCTCCCAGCTGCTCAGCTCCTCACCTGTTAAATTGGAGAG-AGCTGGCCTGGAATGGGGAACTCATGGTCTCCACAGAGGCTGGGATCCCAGGCTCAAATCTAAATACTGGCTGATTCAGGAGGCTAAGGAAGGCAATTCCCTGGAGAGAGGTGTCAGAATTTGGGACAAAAGCAGCATCTAGTCGCTGTCCACAGAGACCTCAAGGACAGGAATCCACTGGTTCCCAATT--GGAGGGGATCCCATGAAAATGAAATGAAACCCGCAC-ATTAGTACTAGACTGAAGA-CAGGAGATTAAAAACTGCAGCATCCGAAGGGATGAAGGAATTAGGAAAT-CTGGAAGTGAAGTTTCTTATATAGGTTG-TTTCTTCCAAAGAGACACAGGGCAACAGTTCAATGACATGAGTAAAAGAAATCTCAGGGCTTGGGATTGAGGGGTGGCAGCCTCTTTGGCAGAGGAGACCTCTCACCTGAAGGCCCAGG-GTTGCCCTGAGAGGGG
i calJac3.chr18_GL285785_random I 1 C 0
s tarSyr2.KE940080v1                21871 1114 +     35544 AGAGGT-GGGAGAAGGAGTCTACTTGCCAGTTAACTCCAAGTGATTCAACAAGGTCCTCACTTGACTTCCATACACT-----ATTTA---ACACCCAGCCGATTCCCCAAACAGTACAAATAAACTTTGCAAGGAAAAATGTCAGACAA----GTAGGTTGTGGCCTTTCAGGAGGTCCAACTTCTCAGGACAACAGTAAACAATTCAAACCACCTGCTAGAACATCCCACAGTGAGGAACTAAGTTGCAGAAAGCAATGACTGAACTGTCAGGGTGAATGTCTAGCTCGTGGCCATCCTAGACCTCCTGCCC-CCAAACCTCCTTCTGTC--CCCTTCTCTTTACCCTTTCACCTCTC---------TCCATTAGCTACCTT-CCAGGGACCCTTGCCCCTTTTTTTTCAGATCCTTCAACATGAGCCCTCAAAACACTCTTGTATTTCAGTCTTTGTAACAACTGAGAAAACT-AAAACTTTGTAAAGCT-GAGAAATTTTGTGATGACAATTTTAACAGGCTCTGAAGGTCCTTCCAAACTCTTGACCAAATATTTCTACTCACTAGGGGAGAACAAAGAGGTTTTCATCTATTCCCACTCTACAGCATCTTCTCCTTG-----------------GAGAAGAGTCTGTGCAGAAAGGAGA-----ACCCCATGTCTAGGAGTTGTCGCTAT-AGCTGCTCAGCTGGTGAAGCCTGCAGTAAGAGAGGAGCCCACTGTGGGTTGGGAATCCCTGTTCTCTACAGCCACAGAGATCCTAAGGTGAATTCCAAGTATTGGTTGATTTAGGAGACCAACAGAGGCAATTTCCTGGAG----GTGTCAGAATTTGTTGCTGGAGCAGCATGTAGTCACCATCCTTGGAGACATGAAGGACAG-AATCCTCTGGTAGCTGCTCCAGCAGCAGAT------------GAATGAAATGTGCCCAATTAGTCCTGAATTCACCATCAGGACAGTGAAAGCTGCACC------AGGGATGAAGGAATTGGGATGTCCCAGAATCGTGGTTTCCTTTATGAATCATTTTCTTCCAAAGAGACACAGCGC------CCAAT-ACCTGAGTGAAGGAAATTCCAGTATCTAGGATTTAATGGAAGCAGATTTTTCAGAGAGAGAGAGCTTTCACTCCAAGTCCCAAGAGTCACCTTGAGAAGGG
i tarSyr2.KE940080v1            C 0 I 321

a score=31824.000000
s hg38.chr1_KI270714v1_random        6457 9 +     41717 AGGGGTCTT
s panTro4.chr1                  114677589 9 - 228333871 AGGGGTCTT
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604068 9 - 229942017 AGGGGTCTT
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118497 9 + 109391073 AGGGGTCTT
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280764 9 + 227556264 AGGGGTCTT
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873087 9 + 220367699 AGGGGTCTT
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359771 9 + 130588469 AGGGGTCTT
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             4923 9 -     10218 AGGGGTCTT
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     33906 9 +     54187 AAGGGTCTT
i calJac3.chr18_GL285785_random C 0 I 108
s tarSyr2.KE942496v1               220475 9 -    410062 TGGGCACTT
i tarSyr2.KE942496v1            n 321 C 0

a score=101549.000000
s hg38.chr1_KI270714v1_random        6466 40 +     41717 GCTG-GTCGCTGGGTCC-----------GGGACTCCAATTGCATACAGCCAG
s panTro4.chr1                  114677598 40 - 228333871 GCTG-GTCGCTGGGTCC-----------GGGACTCCAATTGCACACAGCCAG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604077 40 - 229942017 GCTG-GTCGCTGGGTCC-----------TGGACTCCAATTGCACACAGCCAG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118506 40 + 109391073 GCTG-GTCGCTGGGTCC-----------GGGACTCCAATTGCACACAGCCAG
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280773 41 + 227556264 GCTGGGTCGCTGGGTCT-----------GGGACTCCAATTGCACACAGCCAG
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873096 41 + 220367699 GCTGGGTCACTGGGTCC-----------GGGACTCCAATTGCACACAGCCAG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359780 41 + 130588469 GCTGCATCGCTGGGTCT-----------GGGACTCCAATTGCACACAGCCAG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             4932 41 -     10218 GCTGGGTCCCTGGGTCC-----------GGGACTCCAATTGCACACAGCCAG
i rhiRox1.JABR01021417v1        C 0 C 0
s tarSyr2.KE942496v1               220484 52 -    410062 TCTGCATCACTGGACTCTTTCTGGGGTGGGAAACCTAGTTGCACAGGGCCAG
i tarSyr2.KE942496v1            C 0 I 219
e calJac3.chr18_GL285785_random     33915 108 +     54187 I

a score=5348.000000
s hg38.chr1_KI270714v1_random        6506 2 +     41717 TG
s panTro4.chr1                  114677638 2 - 228333871 TG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604117 2 - 229942017 TG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118546 2 + 109391073 TG
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280814 2 + 227556264 TG
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873137 2 + 220367699 TG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359821 2 + 130588469 TG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             4973 2 -     10218 TG
i rhiRox1.JABR01021417v1        C 0 C 0
e tarSyr2.KE942496v1               220536 219 -    410062 I
e calJac3.chr18_GL285785_random     33915 108 +     54187 I

a score=89161.000000
s hg38.chr1_KI270714v1_random        6508 40 +     41717 GCATGGAGGGTCTGTGACCACGATT-GGGCAATTTC--------CCCCA
s panTro4.chr1                  114677640 40 - 228333871 GCATGGAGGGTCTGTGACCATGATT-GGGCAATTTC--------CCCCA
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604119 41 - 229942017 GCATGGAGGGTCTGTGACCATGATTGGGGCAATTTC--------CCCCA
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118548 41 + 109391073 GCATGGAGGGTCTGTGACCACGATTGGGGCAATTTC--------CCCCA
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280816 41 + 227556264 GCCTGGAGGGTCCATGACCACGATTGGGGCAATTTC--------CCCCA
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873139 41 + 220367699 GCCTGGAGGGTCCATAACCACAACTGGGGCAATTTC--------CCCCA
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359823 41 + 130588469 GCCTGGAGGGTCCACGACCATGATTGGGGCAATTTC--------CCCCA
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             4975 41 -     10218 GCCTGGAGGGTCCATGACCATGACTGGGGCAATTTC--------CCCCA
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34023 49 +     54187 GTATTGGAGACCTGTGGCGCTGAGCCTCTGAATTTCAGTGGAATCCACA
i calJac3.chr18_GL285785_random I 108 C 0
e tarSyr2.KE942496v1               220536 219 -    410062 I

a score=100738.000000
s hg38.chr1_KI270714v1_random        6548 34 +     41717 TTCTGCTTATGGAGCAATAGAGAGGAACCTCACT
s panTro4.chr1                  114677680 34 - 228333871 TTCTGCTTATGGAGCAAAAGAGAGGAACCTCACT
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604160 34 - 229942017 TTCTGCTTAGGGAGCAATAGAGAGGAACCTCACT
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118589 34 + 109391073 TTCTGCTTAGGGAGCAATAGAGAGGAACATCACT
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280857 34 + 227556264 TTCCGCTTAGGGAGCAATAGAGAGGAACCTCACT
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873180 34 + 220367699 TTCCGCTTAGGGAGCAATAGAGAGGAACCTCACG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359864 34 + 130588469 TTCCGCTTAGGGAGCAATAGAGAGGAACCTCACT
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5016 34 -     10218 TTCCGCTTAGGGAGCAATAGAGAGGAACCTCACA
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34072 34 +     54187 TTCCATTTAGGGAGCAATAGAGAGCAACATCATT
i calJac3.chr18_GL285785_random C 0 C 0
s tarSyr2.KE942496v1               220755 31 -    410062 TTCTGGCTTCAGAGTAAAAGAAATG---TTTCCT
i tarSyr2.KE942496v1            I 219 C 0

a score=9858.000000
s hg38.chr1_KI270714v1_random        6582 3 +     41717 GGA
s panTro4.chr1                  114677714 3 - 228333871 GGA
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604194 3 - 229942017 GGA
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118623 3 + 109391073 GGA
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280891 3 + 227556264 GGA
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873214 3 + 220367699 GGA
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359898 3 + 130588469 GGA
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5050 3 -     10218 GGA
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34106 3 +     54187 GTA
i calJac3.chr18_GL285785_random C 0 C 0
s tarSyr2.KE942496v1               220786 3 -    410062 GTG
i tarSyr2.KE942496v1            C 0 n 0
s otoGar3.GL874062                  18709 3 +     23934 GAA
i otoGar3.GL874062              N 0 C 0

a score=255542.000000
s hg38.chr1_KI270714v1_random        6585 68 +     41717 ATTATACAGAAaggtaccagtgagacttgaactctgatcactgaattcagagtccaaagtgct--------cacca
s panTro4.chr1                  114677717 76 - 228333871 ATAATACAGAAaggtcccagtgagacttgaactctgatcactgtattcagagtccaaagtgctcaccattacacca
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604197 76 - 229942017 ATTATACAGAAaggtcccagtgagacttgaactctgaacgctgtattcagagtccatagtgctcaccattacacca
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118626 76 + 109391073 ATTATACCGAAaggtcccactgagacttgaaccctgatcactgtattcagagtccaaagtgctcaccatcacacca
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280894 76 + 227556264 ATTATACAGAAaggtcccactgaaacctgaagtctgattactgtgttcagagtccacagcgctcaccattacaccg
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873217 76 + 220367699 ATTATACAGAAAGGTCCCACTGAGACTTGAACTCTGATCACTGTATTCAGAGTCCACAGCGCTCACCATTACACCA
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359901 76 + 130588469 ATTATACAGAAaggtcccactgaaacctgaagtctgattactgtgttcagagtccacagcgctcaccattacacca
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5053 76 -     10218 ATTATACAGAAaggtcccactgaaacctgaagtctgattactgtgttcagagtccaaggtgctcaccattacactg
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34109 67 +     54187 ATTATACAgaaaggtccc-ctgagacgtgaagtctgattgctgtgttcagagtccaaagagctcacca--------
i calJac3.chr18_GL285785_random C 0 I 24
s tarSyr2.KE940080v1                23306 76 +     35544 ACTAAACAggaagttcccacagagacttgaactcatatcactggagtcagagtctagaagtctctccatcacacta
i tarSyr2.KE940080v1            I 321 C 0
s otoGar3.GL874062                  18712 68 +     23934 AGTAAACGGAgaggttccaccgagatttgaactcggatcactggattcagagtccagagtgctcacca--------
i otoGar3.GL874062              C 0 C 0

a score=3366.000000
s hg38.chr1_KI270714v1_random        6653 1 +     41717 --------t
s panTro4.chr1                  114677793 1 - 228333871 --------t
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604273 1 - 229942017 --------t
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118702 1 + 109391073 --------t
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280970 1 + 227556264 --------t
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873293 1 + 220367699 --------T
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359977 1 + 130588469 --------t
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5129 1 -     10218 --------t
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34200 1 +     54187 --------T
i calJac3.chr18_GL285785_random I 24 C 0
s saiBol1.JH378803                   1031 1 +      3187 --------T
i saiBol1.JH378803              N 0 C 0
s tarSyr2.KE940080v1                23382 1 +     35544 --------t
i tarSyr2.KE940080v1            C 0 C 0
s otoGar3.GL874062                  18780 9 +     23934 ttacaccat
i otoGar3.GL874062              C 0 C 0

a score=9332.000000
s hg38.chr1_KI270714v1_random        6654 2 +     41717 gg
s panTro4.chr1                  114677794 2 - 228333871 gg
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604274 2 - 229942017 gg
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118703 2 + 109391073 gg
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280971 2 + 227556264 gg
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873294 2 + 220367699 GG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359978 2 + 130588469 gg
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5130 2 -     10218 gg
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34201 2 +     54187 GC
i calJac3.chr18_GL285785_random C 0 I 2
s saiBol1.JH378803                   1032 2 +      3187 GT
i saiBol1.JH378803              C 0 N 0
s tarSyr2.KE940080v1                23383 2 +     35544 ga
i tarSyr2.KE940080v1            C 0 C 0
s otoGar3.GL874062                  18789 2 +     23934 gg
i otoGar3.GL874062              C 0 C 0
s tupBel1.scaffold_73712.1-4603       246 2 -      4603 GG
i tupBel1.scaffold_73712.1-4603 N 0 C 0

a score=6006.000000
s hg38.chr1_KI270714v1_random        6656 1 +     41717 a
s panTro4.chr1                  114677796 1 - 228333871 a
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604276 1 - 229942017 a
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118705 1 + 109391073 a
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280973 1 + 227556264 a
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873296 1 + 220367699 A
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359980 1 + 130588469 a
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5132 1 -     10218 a
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34205 1 +     54187 A
i calJac3.chr18_GL285785_random I 2 C 0
s tarSyr2.KE940080v1                23385 1 +     35544 a
i tarSyr2.KE940080v1            C 0 C 0
s otoGar3.GL874062                  18791 1 +     23934 a
i otoGar3.GL874062              C 0 C 0
s tupBel1.scaffold_73712.1-4603       248 1 -      4603 A
i tupBel1.scaffold_73712.1-4603 C 0 N 0

a score=1368087.000000
s hg38.chr1_KI270714v1_random        6657 425 +     41717 accTC-----------ACACTAGCTTATAACTGGAGGTAACTGAGTTCATACTTAGCAGCCATAGTTCCCACACACCTATGTTAAGGCATTTCTTCTGATCCCTCAAGCAACACC-AAAGAAGGTGGACC-TGCGAGAGAGGAGTCATCC---TCTTTCTTTCTCTCTGCCCTCTCCTTTGATCAACTTTTATCATTTCATTTGCACCTCAGAAAATGAGGCAAAATCCAGTTTGGGCTTAGGGCCAGAGAAGAGCCCCTGAGGCCTCCCTC-TGGAAAACATACTC--TCTCAGTTTACC-AGAGTTTCCTGTACCAAGGGGAAATTTCCGCAAACAGTAGTGTTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGGAGGCCAGATGA---TTGTGAGAACAGGACTTGGGACTTCTTGGGTGTCTTGC---------------------------------CCCCTTCCTCC
s panTro4.chr1                  114677797 423 - 228333871 accTC-----------ACACTAGCTTATAACTGGAGGTAACTGAGTTCATACTTAGCAGCCATAGTTCCCACACACCTATGTTAAGGCATTTCTTCTGATCCCTCAAGCAACACC-AAGGAAGGTGGACC-TGCGAGAGAGGAGTCATC-------TTCTTTCTCTCTGCCCTCTCCTTTGATCAACTTTTATCATTTCATTTGCACCTCAGAAAATGAGGCAAAATCCAGTTTGGGCTTAGGGCCAGAGAAGAGCCCTTAAGGCCTCCCTCATAGAAAATATACTC--TCTCAGTTTACCAAGAGTTTCCTGTACCAAGGGGAAATTTCCGCAAACCGTAGTGCTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGGAGGCCAGATGA---TTGTGAGAACAGGACTTGGGACTTCCTGGGTGCCTTTC---------------------------------CCCCTTCCTCC
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604277 421 - 229942017 accTC-----------ACACTAGCTTATAACTGGAGGTAACTGAGTTCATACTTAGCAGCCATAGTTCCCACACACCTATGTTAAGGCATTTCTTCTGATCCCTCAAGCAACACC-AAGGAAGGTGGACC-TGGGAGAGAGGAGTCATCC---TCTTTCTTTCTCTCTGCCCTCTCCTTTGATCAACTTTTA-----TCATTTGCACCTCAGAAAATGAGGCAAAATCCAGTTTAGGCTTAGGGCCAGAGAAGAGCCCTTGAGGCCTCCCTCACGCAAAACATACTC--TCTCAGTTTACC-AGAGTTTCCTGTACCAAGGGGAAATTTCTGCAAAGAGTAGTGTTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGGAGGCCAGATCA---TTGTCAGAACAGGACTTGGGACTTCCTGGGTGCCTTGT---------------------------------CCCCTTCCTCC
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57118706 426 + 109391073 accTC-----------ACACTAGCTCATAACTGGAGGTAACTGAGTTCATACTTTGCAGCCATAGTTCCCACGCACCTGTGTTAAAGCATTTCTTCTGATCCCTCAAGCAACACT-GAGGAAGGTGGACC-TGCGTGGGAGGAGTCATCC---TCTTTCTTTCTCTCTGCCCTCTCCTTTGATCAACTTTTATCATTTCATTTGCACCTCAGAAAATGAGGCAAAATCCAGTTTGGACTTAAGGCCAGGGAAGAGCCCTTGAGGCCTCCCTCATGGAAAACATACTC--TCTCAGTTTACC-AGAGTTTCCTGTACCAAGGGGAAATTTCTGCAAACAGTAGTGTTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGGAGGCCAGATGT---TTGTGAGAACAGGACTTGGGACTTCCTCGGTGCCTTTC---------------------------------CCCCTTCCTCC
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106280974 417 + 227556264 cccTC--------------------CATAGCTGGAGGTAACTGAGCTCATACTTAGCAGCCATAGTTCTCACGCACCTATGTTAAAGCATTTCTTCTGATCCCTCAAGCAACACT-GAGGAAAGTGGACC-TGCGAGGGAGGAGTTGTCC---TTTTTCTTTCTCTCTGCCCTCTCCATTGATCAACTTTTATCATTTCATTTGCACCTCGGAAAATGAGGCAAAATCCAGTTTGGGCTTAGGGCCAGAGAAGAGCCCTTGAGGCTGCCCTCATGGAAAACATACTC--TCTCAGTTTACC-AGAGCTTCCTGCACCAAGGGGAAATTTCTGCAAATAGTAGTGTTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGGAGGCCAGATGA---TTGTCAGAACAGGTCTTGGGACTTCCTGGGTGCCTTGC---------------------------------CCCCTTCCTTC
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873297 426 + 220367699 CCCTC-----------ACACTAGCTCATAGCTGGAGGTAACTGAGCTCATACTTAGCAGCCATAGTTCTCATGCACCTATGTTAAAGCATTTCTTCTGATCCCTCAAGCAACACT-GAGGGAGGTGGACC-TGCGAGGGAGGAGtcatcc---tctctctttctctctgccctcTCCATTGATCaacttttatcatttcatttgcaCCTTGGAAAATGAGGCAAAATCCAGTTTGGGCTTAGGGCCAGAGAAGAGCCCTTGAGGCCTCCCTCAAGGAAAACATACTC--TCTCAGTTTACC-AGAGCTTCCTGCACCAAGGGGAAATTTCTGCAAACAGTAGTGTTA----TATTCTTTTtgccttctct---------cttttccctttgccCAGGGAGCCCAGATGA---TTGTCAGAACAGGACTTGGGACTTCCTGGGTGCCTTGC---------------------------------CCCCTTCCTCC
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13359981 426 + 130588469 cccTC-----------ACACTAGTTCATAGCTGGAGGTAACTGAGTTCATACTTAGCAGCCATAGTTCTCAGGCACCTATGTTAAAGCATTTCTTCTGATCCCTCAAGCAACACT-GAGGAAAGTAGACC-TGCGAGGGAGGAGTCGTCC---TTTTTCTTTCTCTCTGCCCTCTCCATTGATCAACTTTTATCATTTCATTTGCACCTCGGAAAATGAGGCAAAATCCAGTTTGGGCTTAGGGCCAGAGAAGAGCCCTTGAGACTGCCCTCATGGAAAACATACTC--TCTCAGTTTACC-AGAGCTTCCTGCACCAAGGGGAAATTTCTGCAAACAGTAGTGTTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGAAGGCCAGATGA---TTGTCAGAACAGGACTTGGGACTTCCTGGGTGCCTTGC---------------------------------CCCCTTCCTCC
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5133 426 -     10218 cccTC-----------ACACTGGCTCATAGCTGGAGGTAACTGAGTTCATACTTAGCAGCCATAGTTCTCACGCACCTATGTTAAAGCATTTCTTCTGATCCCTCAAGCAACACT-GAGGAAAGTGGACC-TGCGAGGGAGGAGTCATCC---TCTCTCTTTCTCTCTGCCCTCTCCATTGATCAGCTTTTATCATTTCATTTGCATCTCGGAAAATGAGGCAAAATCCAGTTTGGGCTCAGGGCCAGAGAAGAATCTTTGAGGTCTCCCTCATGGAAAACATACTC--TCTCAGTTTACC-AGAGCTTCCTGCACCAAGGAGAAATTTCTGCAAACAGTAGTGTTA----TATTCTTTTTGCCTTCCCT---------CTTTTCCCTTTGCCCAGGAAGGCCAGATGA---TTGTCAGAACAGGACTTGGGACTTCCTGGGTGCCTTGT---------------------------------CCCCTTCCTCC
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34206 415 +     54187 ACCTC-----------ACACTAGCTCATTACTGGAGG---------TCACATTTAGCAGCCATAGTTCCCATGCACCTATGTTAAGGCGTTTCTTCTGATCCCTCAAGCGACACTCAAGGAAGGTGGACC-TGCGAGGGAGGAGTCGTCC---CTCTTCTTTGTCTCTGCCCTCTCCTGGGATCAACTTTTATCATTTCATTTGCACATCAGAAAATGAGGCAAAATCCACTCTATTCTTAGGGCCTGAGAAGAGCCGTCGAGGCCTCCCTCACGG--CACACACTC--TCTCAGTTTACC-CGAGTTTCCTGTACCGAGAGGACATTTCTGCAAACAGTAGTGTTA----TATGCTCTTTGCCTTCCCT---------CTTTTTCTTTTGCCCAAGGAGGCCAGATGG---TTGTCAGAACAGGAATTGGGACTGCCTGGGCGCCTT-T---------------------------------CCCTTTCTTCC
i calJac3.chr18_GL285785_random C 0 C 0
s tarSyr2.KE940080v1                23386 433 +     35544 acTGCCAGGAGGAGGCACTCTGACTCA---CTGGAGTTGGGCAAGTCCTTCTGCAGCCTCCATCCTTCCTAAGAGTTCCTTCCCAGGCAATTCTTCATG----TCAGACAGGATG-CAGGTAGCTTCATCAGGAAAAGGAGGAGTCACCCAAGACTCACATTCTCTCTGCCTGACTCTTTAG-----------------ATTTCCACCTTGGAGAATGACATAAAATCCACTTTGGGATTAGGTACAGGACAGAGGTTTTTAGGCCTCTACCA-AATCCACCTACTC-TTCCTGGATTGCT-GGAGTTTCCTGCCCTGAAGTAAAATCTCTGTCTCCCTCCAGGTGT----TCCTTTTTTTGTTGTTGTTCTAAGTGTCCTCCTTTGTTTGTCCACAGAGTACTGATGACCTTCTTTGAAACAGGACTTGAGATATATGGAGATTTCTAC-----------------TACT------------CCTTTTCCTCC
i tarSyr2.KE940080v1            C 0 N 0
s otoGar3.GL874062                  18792 423 +     23934 accAC-----------CCACAGCCACTT--CTGGA--------------------GCGATCACC-TTCCTAGGCACTAAGCCCATGGCATTCCTCATGGTACCACCAGCAGCACTTCAGGGAGGTTGCCC-TGC---AGAGGAGTTATC----TGTCTTCCTCTCTGTGTCCTTCTCTTC---------------TTTCATTGCCACCTCAGAAAATGAGGTACAGCCCACTCTGAGCTTAGAGCCAGGGAGGAGCACTTTCAGCCTCTGTCATAAACTGCAACCTGGGTCTCAGTTCACC-AGAGTTTCCTGTCCTAAGA-GAAATTTCTGCCAACCCTGGTGTTACTTCCATTTTCTTTGCCTTCGCA---------GTTTTCCCCTTGCTCAGGGAGGCCAGGTGA---TTGTCAGGGCAGGATTTGGGACTTGCTGGGTTCCTTGGCCAAGTAGCATGTATTACACTCCAAAGCCACCACCACTTCCTAC
i otoGar3.GL874062              C 0 C 0

a score=565764.000000
s hg38.chr1_KI270714v1_random        7082 176 +     41717 ATGTGATAAATAATGGC-TGACACCAAGCAAGTGGGATTGGGAGGCAGGGAATCTTTCATTTTCTTCTTCATATACTTCTATGCATTTGTTTGGTTGGTTTTGGCAAGATTTTCTCACCAGAAATGGAGATTTGTTGGATTTAAAATAAAAAGTAATCAGCCATGTTTTACATTTCT
s panTro4.chr1                  114678220 176 - 228333871 ATGTGATAAATAATGGC-TGACACCAAGCAAGTGGGATTGGGAGGCAGGGAATCTTTCATTTTCTTCTTCATATACTTCTATGCATTTGTTTGGTTGGTTTTGGCAAGATTTTCTCACCAGAAATGGAGATTTGTTGGATTTAAAATAAAAAGTGATCAGCCATGTTTTACATTTCT
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604698 176 - 229942017 ATGTAATAAATAATGGC-TGACACCAAGCAACTGGGATTGGGAGGTAGGGAATCTTTCATTTTCTTCTTCATATACTTCTATGCATTTGTTTGGTTGGTTTTGGCAAGATTTTCTCACCAGAAATGGAGATTTGTTGGATTTTAAATAAGAAGTAATCAGCCATGTTTTACATTTCT
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57119132 176 + 109391073 ATGTAGTAAATAATGGC-TGACACCAAGCAAGTGGGATTGGGAGGCAGGGAATCTTTCATTTTCTTCTTCACATACTTCTGTGAATTTTTTTGGTTGGTTTTGGCAAGATTTTCTCACCAGAAATAGAGATTTGTTGGATTTAAAATAAAAAGTAATCAGCCATGTTTTACATTTCT
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106281391 176 + 227556264 ATGTAATAAATAATGGC-TGACACCAAGCAACGGTGATTGGGAGGCAGGGAATCTTTCATTTTCTTCTTCATATACTTCTACGCATTTGTTTGGTTGGTTTTGGCAAGATTTTCTCACCAGAAATCAAGATTTGTCGGATTTAAAATAAAAAGTAATCAGCCATGTTTTACATTTCT
i macFas5.chr1                  C 0 C 0
s papAnu2.chr1                  121873723 176 + 220367699 ATGTAATAAATAATGGC-TGACACCAAGCAACGGTGATTGGGAGGCAGggaatctttcattttcttcttcatatacTTCTATGcatttgtttggttggttttggcAAGATTTTCTCACCAGAAATGGAAATTTGttggatttaaaacaaaaagtaatcagCCATGTTTTACATTTCT
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13360407 174 + 130588469 ATGTAATAAATAATGGC-TGACACCAAGCAACGGTGATTGGGAGGCAGGGAATCTTTTATTTTCTTCTTCATATACTTCTACGTA--TGTTTGGTTGGTTTTGGCAAGATTTTCTCACCAGAAATAGAGATTTGTTGGATTTAAAATAAAAAGTAATCAGCCATGTTTTACATTTCT
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5559 175 -     10218 ATGTAATAAATAATGGC-TGACACCAAGCAAGGGGGATTGGGAGG-AGGGAATCTTTCATTTTCTTCTTCATATACTTCCATGCATTTGTTTGGTTGGTTTTGGCAAGGTTTTCTCACCAGAAATGGAGATTTGTTGGATTTAAAATAAAAAGTAATCAGCCATGTTTTACATTTCT
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     34621 168 +     54187 ATGTAATATGTAATGGC-TGGCACCAATCAAGTGGGATTGGGAAAC--GGAATCTCTCATTTTTTTCTTTGTTTACTCCTA------TGTTTGGTTGGTTTGGGCAACATTTTCTCACTAGAAATGGAGATTTGTTGGATTTAAAACAGAAAGCAATCAGCCATGGTTGGCAttttt
i calJac3.chr18_GL285785_random C 0 I 292
s otoGar3.GL874062                  19215 170 +     23934 AGGTCACATATAAAGGTGTGACAGCAAGCCACTTGCATCAGGAAGCAGGGGAACCTTCAGTTTCTTCTTCATGTACTCTCATG----TGTTTGGTGGGTGTGGACAAGTTTTTCTTACAGTAAACATGTATTTGTTAGCTATAAAA---AAGTCAATCAACCATATTTTACATTTAT
i otoGar3.GL874062              C 0 C 0

a score=331178.000000
s hg38.chr1_KI270714v1_random        7258 110 +     41717 ATAAAACACTCAAACCAGGCCATACTCCCCTGCTGTGCCTCAAAATCAACCATAAACTGTCGAGGTCAGGAGGCAGGGCCCTGACACT----------------------------------------TAAGCACAGTGTGTTTCCTCAG
s panTro4.chr1                  114678396 110 - 228333871 ATAAAACACTCAAACCAGGCCATACTCCCCTGCTGTGCCTCAAAATCAACCACAAACTGTCGAGGTCAGGAGACAGGGCCCTGACACT----------------------------------------TAAGCACAGTGTGTTTTCTCAG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604874 110 - 229942017 ATAAAACACTCAAACCAGGCCGTACTCCCCTGCTGTGCCTCAAAATCAACCATATACTGTCGAGGTCAGGAGGCAGGGCCCTGACACT----------------------------------------TAAGCACAGTGTGTTTTCTCAG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57119308 110 + 109391073 ATAAAACACTCAAACCAGGCCATACTCCCCTGCAGTGCCTCAAAGTCAACCATACACTGTCGAGGTCAGGACGCGGGGCCCTGACCCT----------------------------------------TAAGCACAGTGTGTTTTCTCAG
i nomLeu3.chr12                 C 0 C 0
s macFas5.chr1                  106281567 105 + 227556264 ATAAAACACTCAAACCAGGCCATACTCCCCTTCT----CCCAAAAT-CACCATATACTGTCAAGATCAGGAGGCAGGGCCCTGACACT----------------------------------------TAAGTACAGTGTGTTTTCTCAG
i macFas5.chr1                  C 0 I 38179
s papAnu2.chr1                  121873899 110 + 220367699 ATAACACACTTAAACCAGGCCATACTCCCCTGCTGTGCCTCAAAATGAACCATATAATGTCAAGGTCAGGAAGCAGGGCCCTGACACT----------------------------------------TAAGCACAGTGTGTTTTCTCAG
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13360581 105 + 130588469 ATAAAACACTCAAACCAGGCCATACTCCCCTTCT----CCCAAAAT-CACCATATACTGTCAAGATCAGGAGGCAGGGCCCTGACACT----------------------------------------TAAGTACAGTGTGTTTTCTCAG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5734 105 -     10218 ATAAAACACTCAAACCAGGCCATACTCCCCTTCT----CCCAAAAT-CACCATATACTGTCAAGGTCAGGAGGCAGGGCCCTGACACT----------------------------------------TAAGTACAGTGTGTTTTCTCAG
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     35081 109 +     54187 ATAAAACACTCACACCAGGTCATATTCACCTCCTGTGACTCAAAATCAACCAGA-ACTGTTGAGGTCAGGAGGCAGGGCCCTGACATT----------------------------------------TAAGCACAGTGTGCTTCCAGAG
i calJac3.chr18_GL285785_random I 292 I 1
s otoGar3.GL874062                  19385 150 +     23934 ATCAAATACTTAAACCAGACCATACTCACGAGCTGGGGCTCAAAATCAACCACGTACTGTTGAGGCCGTAAGGCAGGGCTTGGACACTAATCCAGGCACAGCCGTAAGACAGGGCTTGGACACTAATCCAGGCACAGTGTGTTTTCTGAG
i otoGar3.GL874062              C 0 C 0

a score=205585.000000
s hg38.chr1_KI270714v1_random        7368 77 +     41717 -AATTGGCCAAG-TTGATGCCACTCCAATTTCTCAATATACCACAACCCATTAATTG--CGGTTTTTTAAA---GGGTACATGT
s panTro4.chr1                  114678506 77 - 228333871 -AATTGGCCAAG-TTGATGCCACTCCAATTTCTCAATATACCACAACCCATTAATTG--CGGTTTTTAAAA---GTGTACATGT
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122604984 77 - 229942017 -AATTGGCCAAG-TTGATGCCATTCCAATTTCTCAATATACCACAACCCATTAATTG--CGGTTTTTAAAA---GTGTACATGT
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57119418 78 + 109391073 -AATTGGCCAAGTTTGACGCCATTCCAATTTCTCAATATACCACAACCTATTAATTG--CGGTTTTTAAAA---GTGTACATGT
i nomLeu3.chr12                 C 0 C 0
s papAnu2.chr1                  121874009 77 + 220367699 -AATTGGCCAAG-TTGATGCCATTCCAATTTCTCAATATACCATAACCCAttaattg--tggtttttaaaa---gTGTACATGT
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13360686 77 + 130588469 -AATTGGCCAAG-TTGACGCCATTCCAATTTCTCAATATACTACAACCCATTAATTG--CAGTTTTTAAAA---GTGTACACAT
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5839 77 -     10218 -AATTGGCCAAG-TTGACGCCATTCCAATTTCTCAATATACCACAGCCCATTAATTG--CAGTTTTAAAAA---GTGTACGTAT
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     35191 77 +     54187 -ACTTGGCCAAG-TTGATACTATTCCAATTTCTCAATATGCCATGACCCATTAATTG--TGGTTTTTAAGC---GTGTACGTGA
i calJac3.chr18_GL285785_random I 1 C 0
s otoGar3.GL874062                  19535 83 +     23934 AACCTGGCCAAG-TTGATTCCATTCCACTTTTACAATATACCATAACCCATCAATTGCACAGTTTTCAAAAAGTGTGCACATGT
i otoGar3.GL874062              C 0 N 0
e macFas5.chr1                  106281672 38179 + 227556264 I

a score=934298.000000
s hg38.chr1_KI270714v1_random        7445 456 +     41717 ATTTttaccaaaaccacagggcttcagtgtt---------------------ctcagcacacagaaagccaatcattgagacattgagtattgctgaggaagaaggctttaatcaggtgctgcagctgagtagacaggagatgagtctcaaatctgtctccctgattgactaaagttaggggtttatatagcgcagaagaaaagttaactgtgtgtgggaaaagaggaactagggagggctgaggaagcactcgtgatgagtgaggggactggcatctcattgtctggatgctgtgattggctgagtttcaggtctctgatgcttttt--gagaggcctgagagtcctttcctgaggaaggaactcagataaaacaaatataagtttgttttaTagaatggcttgaccacaggagtttgaaaccagcctgggc---aatatggtgaaaccctgtctctacc----------------aaaatacaaaaa------GAAAAAGAG
s panTro4.chr1                  114678583 454 - 228333871 ATTTttaccaaaaccccagggcttcagtgtt---------------------ctcagcacacagaaagacaatcattgagacattgagtattgctgaggaagaaggctttaattgggtgctgcagctgagtagacgggagatgagtctcaaatctatctccctgattgactcaagttaggggtttatatagcacagaagaaacg-taactgtgtgtgggaaaagaggaactagggaggggtgaggaagcactcgtgatgagtgaggggactggcatctcattgtctggatgctgtgattggctgagtttcaggtctctgatgcttttt--gagaggactgagagtcctttcctgaggaaggaactcagataaaacaaatataattttctTTTATagaatggcttgacctcaggagtttgaaaccagtctgggc---aatatggtgaaaccctgtctctacc----------------aaaatacaaaaa-------AAAAAGAG
i panTro4.chr1                  C 0 C 0
s ponAbe2.chr1                  122605061 455 - 229942017 ATTTttaccaaaaccccaggggttcagtgtt---------------------ctcagcacacagaaagccaatcattgagacattgagtattgctgaggaagaaggctttaatcgggtgctgcagctgaggagacaggagatgaatctcaaatctatctccctgatcaactaaagttaggggtttatatagcacagaagaaatg-taactgtgggtgggaaaagaggaaccagggaggggtgaggaagcactcgtgatgagtgaggggactggcatctcattgtctggatgctgtgatcagctgagtttcaggtctatgatgcttttt--gagagggctgagagtcctttcctgaggaaggaactcagataaaacaaatgtaagtttgttttaTagaatggcttgacctcaggagtttgaaaccagcctgggc---aatatggtgaaaccctgtctctact----------------aaaatacaaaaa------AAAAAAGAG
i ponAbe2.chr1                  C 0 C 0
s nomLeu3.chr12                  57119496 488 + 109391073 ATTTttaccaaaaccccaggggttcagtgtcggtcctgctgttcactgttggtccagcacacagaaagccaatcattgagacattgagtattgctgaggaagaaggctttaattgggtgctgcagctgaggagacaggagatgaatctcaaatctagctccctgatcgactaaagttaggcgtttatatagcagggaagaaaca-taactgtgtgtgggaaaagaggaactagggagaggtgaggaagcactcatgatgagtgaggggtctggcatctcattgtctggaggctgtgatcagttgagtttcaggtctatgatgcttttt--gagcagcctgagagtcctttcctgaggaaggaactcagataaaacaaatataagtttgttttaTagaatggcttgacctcaggagtttgaaatgagcctgggc---aatatggcgaaaccttgtctttaccgaaaat----------aaaaaatAAAAATTAAAAAAAAAAGAG
i nomLeu3.chr12                 C 0 C 0
s papAnu2.chr1                  121874086 489 + 220367699 ATTTTTACCAAAACCCCAGGGGTCCAGTGTAGGTCATGCTG-----------CTCAGCACACAGAAAGCCAAAAATTGAGACATTGAATATTGCtgaggaagaaggctttaatcaggtgctacagctgaggagatgggagatgagtctcaaatctgtctccctgatCAACTAAAGTTAGGGGTTTACATAGCAGGGAAGAAACA-TAAC--TGTGTGGGAAAAGAGGAActggggaggggtgaggaagTACTCATGGTGAGTGAGGGGTttggcatctcattgtctggaGGCTGTGATCAGCTGAGTTTCAGGTCTATGATGCTTTTCGGGAGGGGCCTGAGagtcctttcctgaggaaggaactcagataaaacaaatataagtttgTTTTATCAAAaggcttgacctcaggagtttgaaagtAGCCTAGGCtataatatggtgaaaccctgtctctaccaaaaatacaaaaaaagaaaaaaaaagaa-aaaaaaaaaaagag
i papAnu2.chr1                  C 0 C 0
s chlSab2.chr20                  13360763 479 + 130588469 ATTTttaccaaatccccaggggttcagtgtaggtcctgctg-----------ctcagcacacagaaagccaatgattgagacatttagtactgctgaagaagaaggctttaatcaggtgcggcggccgaagagatgggagataagtctcaaatctgtctccttgatctactaaagtgaggggtttatatagtagggaagaatca-taactgtgtgtgggaaaacaggaactggggaggggtgaggaatcactcatgatgaatgaggggtttggcatctcattatttggaggctgtgatcagctgagtttcaggtctatgatgcttttt--gaaaggcatgagaggcctttcctgaggaaagaactcagataaaacaaatataagtttgttttaTCAAATGGcttgacctcaggagtttgaaaccatcctgggc---aatatgatgaaaccctgtctctaccaaaaatgca-------aaaaaaaaaaaa-aaaaaaaaaaaGGG
i chlSab2.chr20                 C 0 C 0
s rhiRox1.JABR01021417v1             5916 478 -     10218 ATTTCtaccaaatccccaggggtccagtgtaggtcctgctg-----------ctcagcacacagaaagccaattattgagacatttagtactgctgaagaagaaggctttaatcgggtgctgcagctgaagagatgcaagatgagtctcaaatctgtctccctggtctactaaagtgaggggtttatgtagcagggaagaaaca-taactgcgtgtgggaaaagaggaactggggaggggtgaggaagcactcatgatgaatgaggggtttggcatctcattatttggaggctgtgatcagctgagtttcaggtctatgatgcttttt--gagaagcatgagaggcctttcctgaggaaagaactcagataaaacaaatataagtttgttttaTCAAATGGcttgacctcaggagtttgaaaccatcttgggc---aatatgataaaaccctgtctctaccaaaaatac--------aaaaaaaaaaaa-aaaaaaaaaaaGAG
i rhiRox1.JABR01021417v1        C 0 C 0
s calJac3.chr18_GL285785_random     35268 450 +     54187 ATAGCTTATgaaaccccaggggttccgtctaggtcctgctt-----------ctcaacac----aaagtccatcattgagacattgagtattg-tgaggaagaagg-tttaatcaggtgctacagctgaggatatgggagatcagtctcaaatcgatctccctgatcaactaaagttaggggtttatgtagcagggaagaaacg-taactgtgtgtaggaaaggaggaactagggagtggtgaggaagcactcatgatgaatgagggggctggcatctca----atggatgctgt-----gctgagtttcaggtctatgatgcttttt--gagaggcctgagggtcctctcctgaggaagaaactttgttaaaacaaatgtaagtttctTTTATCAgattgcttgacctcaggagtttgaaaccagcctgggc---aatatggtaaaaccctgtctctctt----------------aaaaaaaaaaaa------aaaaagaag
i calJac3.chr18_GL285785_random C 0 N 0
e macFas5.chr1                  106281672 38179 + 227556264 I

a score=1035762.000000
s hg38.chr1_KI270714v1_random      7901 620 +     41717 GGTTGCttctaagatggctgaataggaacagctccggtctacagcttcaggtgagatagacacagaagacaggtgatttctgcatttccaactgaggtacctggttcatctcactgggacttgttggacagtggatgcagcccacggaggatgagccaaagcagggtggggtgtcgcctcacccgggaagtgcaaggggttgggggatttctttttcctagccaagggaagctgtgagtgactgtacctcgaggagcagtacacccctgcccaaatactgtg---ttttccactgtctttgcaaccgacagaacaggagattccctcttgtgcctggctcggcaggtcccatgcccatggagccttgcctgctgctagcacagcagtctgagatcaacctgtgacactggagcatggcagggggagggggt--tctgccactgctgaggcttgagtatgtggttctatggtcacagtgtaaataaagtggtagggaagctcgaactgggtagagcccactgcagctcagcaaggcctactgc--ctctagattctacctctgggggcagggcatatctgaataaaaggcagcagacagcttctgcagacttaaacgtccctgcctga
s panTro4.chr1                114679037 622 - 228333871 GGTTGCttccaagatggctgaataggaacagctccggtctacagcttccagtgagatagatgcagaagacaggtgatttctgcatttccaactgaggtacctggttcatctcactgggactcgttggacagtgggtgcagcccatagaggatgagccaaagcagggtggggtgtcacctcacctgggaagcgcaaggggttgggagatttctttttcctagccaagggaagctgtgagtgact-cacctggaggagcagtacactcctgcccaaatactgtgcttttttccactgtctttgcaactgacagaccaggagattccctcttgtgcctgcctcggcaggtcccatgcccatggagccttgcctgctgctagcacagcagtctgagatcaacctgcgacattggagcatggcagggagagggggt--tctgccactgctgaggctctagtacttggttctatggtcacagtgtaaacaaagtggtagggaagctcgaactgggtggagcacactgcagctcagcaaggcctactgc--ctctagattccacctctgggggcagggcatatctgaataacaggcagcagacagcttctgcagacttaaatgtccctgcctga
i panTro4.chr1                C 0 C 0
s ponAbe2.chr1                122605516 622 - 229942017 GGTTGCttccaagatggctgaataggaacagctccggtctacagcttccagcgagatagacgcacaagacaggtgatttccgcgtttccaactgaggtacctggttcatctcactggaactcgttggacagtgggtgcagcccacggaggatgagccaaagcagggtggggtgttgcctcacccgggaagtgcaaggggttgggggatttctttttcctagccaaggaaagctgtgagtgactgtatctggaggagcagtacactcctgcccaaatactgtgcttttttccactgtctttacaaccgacagaccaggagattccctcttgcgcctggctcagcaggtcccatgcccatggagccttgcctgctgctagcacagcagtctgagatcaacctgggacactggagcatggcagggggagggggt--tctgccactgctgaggcttaagtaggtggttctatggtcacagtgtaaacaaagtggtagggaagctcgaactgggcagagcccactgcagctcagcaaggcctgctgc--ctctagattccacctctggggacagggcatatct-aataaaaggcagcagacagcttctgcagacttaaacgtccctgcctga
i ponAbe2.chr1                C 0 I 34947
s nomLeu3.chr12                57119984 622 + 109391073 GATTGCttccaagatggctgaataggaaccgctccggtctacagcttccagtgagatcgacacaaaagacaggtgacttctgcatttccaactgaggtacccggttcatctcactgggactggttggatagtgggtgc--ctcacagaggatgagccaaagcagggtgggctgtcacctcacctgggaagtgcaaggggatgggggatttctttttcctagccaagggaagctgtgagtgactgtacctggaggagcagtacactcctgccccaatactgcact-ttttccactgtctttgcaaccgacagaccaggagattccctcccatgcctggctcagcaggtcccatgcccatagagctttgcctgctgctagtgcagcagtctgagatcaacccgggacactggagcatatcagggggagggggt--tttgccactgctgaggcttgagtaggtggttctatggtcacagtgtaaacacagtggtagggaagctcgaactgggcagagcccactgcagctcagcaaggcctactgcctctctagattccacctctgggggcagggcacatctgaataaaaggcagcagacagcttctgcagacttaaacatccctgcctaa
i nomLeu3.chr12               C 0 C 0
s papAnu2.chr1                121874575 625 + 220367699 agttacttccaagatggccaaataggaacagctccgttCTACAGCTTCCAGCGAAATCGATgtagaagatgggtgatttctgcatttccaactgaggtaccttgttcatctcactgggactggttggacagtgggtgcagcccacacaggatgagccaaagcagggtggggtgtcacctcacctgggaagtgcaaaggTTTGGAGGATTtctttttcctagccaagggaagctgtgagtgaCTGTACCTGGAGGAGCAGaacactcctgcccaaatactgcact-ttttcCCCTGTCTTCACAACtgacagaccaggagattccctcccgTGCCTGACTTGGTGGGTCCCaagcccatggagccttgcttgctgctagtgcagcagtctgagatcaacctgggatACTGCAGCACAGCA-GGGGAAGGGGGAATCCcccactgctgaggcttgagtaggcgatTCTACGGttacagtgtaaacaaagtgGTAGGgcagctcaaactgggtggagcccaccacagcttaGCAAGGCCtcctgcctctctagattccacctctggaggcagggcatatctgaataaaaggcagcagacagcttctgcagacttataagtccctgcctga
i papAnu2.chr1                C 0 C 0
s chlSab2.chr20                13361242 623 + 130588469 GGTTGCttccaagatagccgaataggaagagctccagtctacagcttcccccaagatcaatgcagaaagcaggtgatttctgaatttccaactgaggtacctggttcatctcattgcaaccggttggacagtgggtgcagcccatggaggatgagccaaagcagggtggggtgtcaccttacctgggaagcacaaggggttgggggacttcttttatctagccaagggaagctgtgagtgactgtacctggaggagaagtacattcctgccccagtactgtgct-ttttctactgtcttctcaatcgacagaccaggagagtccctcccatgcctggcttggcaggtcccatgcccatagagccttgcctgctgctagtgcagcagtctgagatcaacctgggacactggagcatggca-ggagagggggt--tctgccactgctgaggcttgaataggcagttctatggtaacagtgtaaacaaagtggtagggaagctcaaattgggcagagcccactgcagctcagcaaggcctactgcctctctaaattccacctctggggtcagggcatatctgaatagaaggcagcagacagcttctgtagacttaaacatccctgcctga
i chlSab2.chr20               C 0 C 0
s rhiRox1.JABR01021417v1           6394 623 -     10218 GGTTGCttccaagagggccaaataggaagagctccagtctacagcttcccccaagatcgatgcagaaggtaggtgatttctgaatttccaactgaggtacctggttcatctcattgcgaccggttggacagtgggtgcagcccatggaggatgagccaaagcagggtggggtgtcaccttacccaggaagcgcaaggggttggagaatttcttttatctagccaagggaagctgtgagtgactgtacctggaggagaagtacactcctgccccagtactgcgct-ttttccactgttttcgcaatcgacagaccaggagaatccctcccgtgcctggcttggcaggtcccatgcccatagagccttgcctgctgctagtgcagcagtctgagatcaacctgggacactggagcatggca-ggagagggggt--tctgccactgctgaggcttgagtaggcagttctatgataacagtgtaaacaaagtggcagggaagctcaaattgggcagagcccactgcagctcagcaaggcctcctgcctctctaaattccacctctggggtcagggcatatctgaataaaaggcagcagacagcttctgtagacttaaacgtccctgcctga
i rhiRox1.JABR01021417v1      C 0 C 0
e macFas5.chr1                106281672 38179 + 227556264 I

a score=5865.000000
s hg38.chr1_KI270714v1_random      8521 4 +     41717 cagc
s panTro4.chr1                114679659 4 - 228333871 cagc
i panTro4.chr1                C 0 N 0
s nomLeu3.chr12                57120606 4 + 109391073 cagc
i nomLeu3.chr12               C 0 I 39649
s papAnu2.chr1                121875200 4 + 220367699 cagc
i papAnu2.chr1                C 0 N 0
s chlSab2.chr20                13361865 4 + 130588469 cagc
i chlSab2.chr20               C 0 I 27440
s rhiRox1.JABR01021417v1           7017 4 -     10218 cagc
i rhiRox1.JABR01021417v1      C 0 N 0
e macFas5.chr1                106281672 38179 + 227556264 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      8525 36 +     41717 AGGGACTGCTGTCATAATCATTATGATTATGAATCa
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=1119.000000
s hg38.chr1_KI270714v1_random      8561 12 +     41717 taatcatgaaga
s rhiRox1.KN298490v1              13621 12 -    162365 taatcatgaaga
i rhiRox1.KN298490v1          N 0 I 238
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      8573 238 +     41717 caatctgtattccagaatagtaagggaacctattccatcagggagccaactgaaaacatcaaATCCCAGTTCACACCCCAgggtgtggtgtcatgcacctgtagtcccagctacttgggaggattagtaaggaggtttgcttgaattcatgaggtcaaggcagaagtaaaccctgatcatgccactgtactccaacctgggcgacagtgagaccttgtctcagaaacaaacaaacaaa
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13633 238 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=373.000000
s hg38.chr1_KI270714v1_random      8811 4 +     41717 caaa
s rhiRox1.KN298490v1              13871 4 -    162365 caaa
i rhiRox1.KN298490v1          I 238 I 307
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      8815 55 +     41717 aaaCCCCACAAAACCAAACAACAACAAATTGTCACCTCATTCTGAAATGACAGTG
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=-623.000000
s hg38.chr1_KI270714v1_random      8870 17 +     41717 GCAAACATCACTTTGCT
s tarSyr2.KE926233v1              25449  5 +    179599 A------------TGCA
i tarSyr2.KE926233v1          N 0 I 131
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      8887 131 +     41717 ATTTGAAAATTAAAAGAAgccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagatcgagaccatcctggctaacagagtgaaaccccaactc
e tarSyr2.KE926233v1              25454 131 +    179599 I
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=250.000000
s hg38.chr1_KI270714v1_random      9018 5 +     41717 tacta
s tarSyr2.KE926233v1              25585 5 +    179599 tacaa
i tarSyr2.KE926233v1          I 131 I 71
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9023 65 +     41717 aaaatacaaaaaattagctggacgtggtggcgggtgcctgtaatcccagctactggggaggctga
e tarSyr2.KE926233v1              25590 71 +    179599 I
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=79.000000
s hg38.chr1_KI270714v1_random      9088 35 +     41717 ggcaggagaatggtgtgaacccgggaggcggagct
s tarSyr2.KE926233v1              25661 26 +    179599 cgtggaaggatcgccggggccc---------agct
i tarSyr2.KE926233v1          I 71 I 34
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9123 50 +     41717 tgcagtgagccgagatagccccactgcactccagcctgagcgaagagcgc
e tarSyr2.KE926233v1              25687 34 +    179599 I
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=382.000000
s hg38.chr1_KI270714v1_random      9173 4 +     41717 gaga
s tarSyr2.KE926233v1              25721 4 +    179599 gaga
i tarSyr2.KE926233v1          I 34 N 0
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9177 261 +     41717 ctccgtctcaaaaaaaaaaaaaaaaaaaaaaaaggaaaTTAAAAGAAAAACACTCCCTCTTGCTATCAACCTGCCCTCTTGCTCTAACTTGTCTGACCCATGGTTTAAAATGCCCAAAAGCTGAAGTACTCAAATTATAGTACACTTACCTGCTCTGCACCAGCATTTACTTTTGTCTGGAGGAGATCACCATGCATGGTCCTATAAATGTCTAACGGCATGGAATGATGAAGGGCAGTGTCTTTTAGGATAGTTGGATAT
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              13875 307 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=240.000000
s hg38.chr1_KI270714v1_random      9438 8 +     41717 ATATATAT
s rhiRox1.KN298490v1              14182 8 -    162365 acacacac
i rhiRox1.KN298490v1          I 307 I 1843
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9446 81 +     41717 ATATGCGGAATGCTACATCACAAGgataaggatgtgaaaagaaccagtttcttttgtaatcctaaatgttctagtctgaga
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              14190 1843 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=91.000000
s hg38.chr1_KI270714v1_random      9527 1 +     41717 a
s gorGor3.chr1                 17413991 1 + 229507203 a
i gorGor3.chr1                N 0 N 0
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              14190 1843 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9528 9 +     41717 ttaaaagcc
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              14190 1843 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=91.000000
s hg38.chr1_KI270714v1_random      9537 1 +     41717 a
s rhiRox1.KN298490v1              16033 1 -    162365 a
i rhiRox1.KN298490v1          I 1843 I 353
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9538 99 +     41717 ttgttcgaagaagggtgcccagggtccagctggtcgccgaaagcttgctccgcaatacaggctaaggaccAGCTTCTTTGGGAGAGAACAGATGAGGGA
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              16034 353 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=86.000000
s hg38.chr1_KI270714v1_random      9637 3 +     41717 AGC
s tarSyr2.KE950919v1               5849 3 +    113002 CGC
i tarSyr2.KE950919v1          N 0 N 0
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              16034 353 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9640 215 +     41717 AGGAGAGAAAAAAGGGAGAGGCAGACGTCACTTCCCCTTGCCGGCTCCAGCAGCGGGTTGGTCGGCTGAGCGGCAGAAAGGCAGACGGGGACTGGGAAAGGCACTGTCGGTGACATCACAGATAGGGCGACTTCTATGTAGATGAGCCAGCGCAGGGGCTGCTGCTTCACCACGAAGGAGTTCCCGTGCCGTGGGAGCGGGTTCAGGACCGCTGG
e macFas5.chr1                106281672 38179 + 227556264 I
e rhiRox1.KN298490v1              16034 353 -    162365 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=-31.000000
s hg38.chr1_KI270714v1_random      9855 1 +     41717 T
s rhiRox1.KN298490v1              16387 1 -    162365 C
i rhiRox1.KN298490v1          I 353 N 0
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=0.000000
s hg38.chr1_KI270714v1_random      9856 38 +     41717 CGGACCTGAGAGTCCCAGCTGTGTGTCAGGGCTAGGAG
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=91.000000
s hg38.chr1_KI270714v1_random      9894 1 +     41717 T
s calJac3.chr18                46558840 1 -  47448759 T
i calJac3.chr18               N 0 C 0
e macFas5.chr1                106281672 38179 + 227556264 I
e chlSab2.chr20                13361869 27440 + 130588469 I
e nomLeu3.chr12                57120610 39649 + 109391073 I
e ponAbe2.chr1                122606138 34947 - 229942017 I

a score=102961.000000
s hg38.chr1_KI270714v1_random       9895 32 +     41717 CCCATTGAGCAGTCTTGATCCTGTATTAGCCC
s panTro4.chr1_GL389124_random      9189 32 +     50403 CCCATTGAGCAGTCTTGATCCTGTATTAGCCC
i panTro4.chr1_GL389124_random N 0 C 0
s ponAbe2.chr1                 122641085 32 - 229942017 CCCACTGAGCAGTCTTAATCCTGTATTAGCCC
i ponAbe2.chr1                 I 34947 C 0
s nomLeu3.chr12                 57160259 32 + 109391073 CCCACTGAGCAGTCTTGATCCTCTATTAGCCC
i nomLeu3.chr12                I 39649 C 0
s rheMac3.chrUn_JH293294           16601 32 -     29987 CCCACTGAGCAGTCTTGATCCTGTATTAGCCC
i rheMac3.chrUn_JH293294       N 0 C 0
s macFas5.chr1                 106319851 32 + 227556264 CCCACTGAGCAGTCTTGATCCTGTATTAGCCC
i macFas5.chr1                 I 38179 C 0
s papAnu2.chr1                  99168846 32 - 220367699 CCCACTGAGCAGTCTTGATCCTGTATTAGCCC
i papAnu2.chr1                 N 0 C 0
s chlSab2.chr20                 13389309 32 + 130588469 CCCACTGAGCAGTCTTGATCCTGTATTAGCCC
i chlSab2.chr20                I 27440 C 0
s calJac3.chr18                 46558841 32 -  47448759 CCCACTGAGCAGTCTTGCTTCTGTATTAGCCC
i calJac3.chr18                C 0 C 0

a score=4500.000000
s hg38.chr1_KI270714v1_random           9927 1 +     41717 C
s panTro4.chr1_GL389124_random          9221 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122641117 1 - 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57160291 1 + 109391073 C
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               16633 1 -     29987 C
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106319883 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99168878 1 - 220367699 C
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389341 1 + 130588469 C
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46558873 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     72496 1 -    347432 C
i tupBel1.scaffold_123997.1-347432 N 0 I 2962

a score=174850.000000
s hg38.chr1_KI270714v1_random           9928 65 +     41717 AGGAAATGAAATAGAAACAGGACCCTACGTTAAAAAGTTGCAGTGGAGATGTGGTGGCCACCAGG
s panTro4.chr1_GL389124_random          9222 65 +     50403 AGGAAATGAAATAGAAACAGGACCCTCCGTTAAAAAGTTGCAGTGGAGATGTGGTGGCCACCAGG
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122641118 48 - 229942017 AGGAAATGAAATAGAAAAAGGACCCTA-----------------GGAGATGTGGTGGCCACCAGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57160292 62 + 109391073 AGGAAATGAAATAGAAACAGGATCCTAGGTTAAAAAGTTGCAGTGGAGAT---GTGGCCACCAGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               16634 65 -     29987 AGGAAATGAAATACAAACAGGACCCTAAGTTAAAAAATTGCAGTAGAGATGTGGTGGCCACCAGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106319884 65 + 227556264 AGGAAATGAAATACAAACAGGACCCTAAGTTAAAAAATTGCAGTGGAGATGTGGTGGCCACCAGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99168879 65 - 220367699 AGGAAATGAAATACAAACAGGACCCTAAGTTAAAAAATTGCAGTGGAGATGTGGTGGCCACCAGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389342 65 + 130588469 AGGAAATGAAATATAAACAGGACCCTAAGTTAAAAAATTGCAGTGGAGATGTGGTGGCCACCAGG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46558874 65 -  47448759 AGGAAATGAAACCCAAACAGGATCCTAGGTTAAAAAGTTGCAGTAGAGGTGTGGTGGCCACCAGG
i calJac3.chr18                    C 0 I 1
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=2800.000000
s hg38.chr1_KI270714v1_random           9993 1 +     41717 G
s panTro4.chr1_GL389124_random          9287 1 +     50403 G
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122641166 1 - 229942017 G
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57160354 1 + 109391073 G
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               16699 1 -     29987 G
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106319949 1 + 227556264 G
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99168944 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389407 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e calJac3.chr18                     46558939 1 -  47448759 I

a score=874096.000000
s hg38.chr1_KI270714v1_random           9994 275 +     41717 -GCTGGAACTGT-GGGGTGACTGAGAGTAT-CCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTGTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCCAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTCCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAACACCTCTCCCTTCTCCTATTTTTTGC-CGTAGGTAAGACAGTTCCCGGGCCTGATCCTGAATCAGG
s panTro4.chr1_GL389124_random          9288 276 +     50403 -GCTGGAACTGT-GGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTGTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCCGGGCCAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTACTCCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAACACCTCTCCCTTCTCGTATTTTTTGC-CGTAGGTAAGACAGTTCCCGGGCCTGATCCTGAATCAGG
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122641167 278 - 229942017 -ACTGGAACTGTGGGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTTTGCTGGTGAGCCTCCCTGTCAGCTGGCTTCCCTGGGTGAGTTGCTCCCAGAAGCTTTGTCCCAGGTAGTAGTCAATGTCATTGCTCCTTAGGAGATCCTCAGAAGATTTTACTTTTTTAAGGGCATGCTGGGTGATAAGATAACAAATACCTCTACCTTTAATGATTTTTTGCTTGTAGGTAAGACAGTTTCCGGGCCTGATCCTAAATCAGG
i ponAbe2.chr1                     C 0 M 3000
s nomLeu3.chr12                     57160355 277 + 109391073 -GCTGGAACTGTGGGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCGACTTACTGGTGCTGAGTTTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCGAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTCCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGATAAGATAACAAATACCTCTCCCTTCTCGTGTTTTTTGC-CGTAGGTAAGACAGTTCCCGGGCCTGATCCTGAATCAGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               16700 277 -     29987 -GCTGGAACTGTGGGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTTTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCGAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTTCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAATACCTCTCCCTTCTCGTATTTTTTGC-CGTAGGTAAGATAGTTCCCGGGCCTGATCCTGAATCAGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106319950 277 + 227556264 -GCTGGAACTGTGGGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTTTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCGAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTTCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAATACCTCTCCCTTCTCGTATTTTTTGC-CGTAGGTAAGATAGTTCCCGGGCCTGATCCTGAATCAGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99168945 277 - 220367699 -GCTGGAACTGTGGGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTTTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCGAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTTCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAATACCTCTCCCTTCTCGTATTTTTTGC-CGTAGGTAAGATAGTTCCCGGGCCTGATCCTGAATCAGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389408 277 + 130588469 -ACTGGAACTGTGGGGGTGACTGAGAGTATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTTTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCGAGTTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTTCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAATACCTCTCCCTTCTCGTATTTTTTGC-CGTAGGTAAGATAGTTCCCGGGCCTGATCCTGAATCAGG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46558940 276 -  47448759 GTCTGGAACTGTGGGGGTGAC--AGGGGATTCCAAAGCCCTGTGGCCAACTTACTGGTGCTGAGTCTGCTGGTGAGCCTCTCTGTCAGCTGGCTTCCCTGGGCGAGCTGCTCCCGGAAGCTCTGTCCCAGGTAGTAGTCAATGTCATTGCTCCTTAGGAGATCCTCAAAAGATTTTACTGTATCTTTTGCATGCTGGGTGAGAAGATAACAAATACCTCTCCCTTCTCGTATTTTTTGC-CGTAGGTAAGACAGTTCCCGGGCCTGATCCTGAATCAGG
i calJac3.chr18                    I 1 C 0
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=70972.000000
s hg38.chr1_KI270714v1_random          10269 29 +     41717 GAATCATATTTCCTAATGCAGGACAGAAG
s panTro4.chr1_GL389124_random          9564 29 +     50403 GAATCATATTTCCTAATGCAGGACAGAAG
i panTro4.chr1_GL389124_random     C 0 C 0
s nomLeu3.chr12                     57160632 29 + 109391073 GAATCATATTTCCTAATGCAGGACAGAAG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               16977 29 -     29987 GAATCATATTTCCTAATGTAGGACAGAAG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320227 29 + 227556264 GAATCATATTTCCTAATGTAGGACAGAAG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169222 29 - 220367699 GAATCATATTTCCTAATGTAggacagaag
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389685 29 + 130588469 GAATCATATTTCCTAATGTAGAACAGAAG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46559216 29 -  47448759 GAGTCATATTTCCTAACACAGGACAGAAG
i calJac3.chr18                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e ponAbe2.chr1                     122641445 3000 - 229942017 M

a score=2548.000000
s hg38.chr1_KI270714v1_random          10298 1 +     41717 A
s panTro4.chr1_GL389124_random          9593 1 +     50403 A
i panTro4.chr1_GL389124_random     C 0 C 0
s nomLeu3.chr12                     57160661 1 + 109391073 A
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               17006 1 -     29987 A
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320256 1 + 227556264 A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169251 1 - 220367699 a
i papAnu2.chr1                     C 0 C 0
s calJac3.chr18                     46559245 1 -  47448759 A
i calJac3.chr18                    C 0 C 0
s micMur1.scaffold_873                 27827 1 -    433431 A
i micMur1.scaffold_873             N 0 I 2184
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e chlSab2.chr20                     13389714 0 + 130588469 C
e ponAbe2.chr1                     122641445 3000 - 229942017 M

a score=340854.000000
s hg38.chr1_KI270714v1_random          10299 156 +     41717 -------------------GGAAAGGGTGGATGATAAGTTAT---------GGGG-CTTCTGTAGAGATTTCTATGAGAACATCTCTAAGGAACTCCCCCAAACTGAATTCTGGCACATAAGCCATAGGAGGCATTTAACAGTAAATTCTACCCTGATAAAGTATTGCACTAAAAAATTTAGTAT
s panTro4.chr1_GL389124_random          9594 156 +     50403 -------------------GGAAAGGGTGGATGATAAGTTAT---------GGGG-CTTCTGTAGAGATTTCCATGAGAACATCTCTAAGGAACTCCCCCAAACTGAATTCTGGCACATAAGCCATAGGAGGCATTTAAGAGTAAATTCTACCCTGATAAAGTATTGCACTAAAAAATTTAGTAT
i panTro4.chr1_GL389124_random     C 0 C 0
s nomLeu3.chr12                     57160662 180 + 109391073 ----GGAAAGAGTAAGTATGGAAAGAGTGGATGCTAAGTTATGGAGTTATGGGGG-CTTCTGTGGAGATTTCTATGAGAGCATCTCTAAGGAACTCCCCCAGGCTGAATTCTGGCACATAAGCCATAGGAGGTATTTAAGAGTAAATTCTACCCTGATAAAGTATTGCATTAAAAAACTTAGTAT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               17007 174 -     29987 GGAAGGAAGGAGTAAGTATGGAAAGAGTGGATGGTAAGTTAT---------GGGGCCTTCTGTAGAGAGTTCTATGAGAACATCTCTAAGGAA--CCACCAAGCTGAATTCCGGCACATAAGCCATAGGAGGTATTTAAGAGTAAATTCTACCGTGATAAAATGTTGCATCAAAAAGTTTACTGT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320257 174 + 227556264 GGAAGGAAGGAGTAAGTATGGAAAGAGTGGATGGTAAGTTAT---------GGGGCCTTCTGTAGAGAGTTCTATGAGAACATCTCTAAGGAA--CCACCAAGCTGAATTCCGGCACATAAGCCATAGGAGGTATTTAAGAGTAAATTCTACTGTGATAAAATGTTGCATCAAAAAGTTTACTGT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169252 174 - 220367699 ggaaggaaagagtaaGTATGGAAAGAGTGGGTGATAAGTTAT---------GGGGCCTTCTGTAGAGAGCTCTATGAGAACATCTCTAAGGAA--CCACCAAGCTGAATTCCGGCACATAAGCCATAGGAGGTATTTAAGAGTAAATTCTACCGTGATAAAATGTTGCACCAAAAAGTTTagtgt
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389714 171 + 130588469 ---AGGAAAGAGTAAGTATGGAAAGAGTGGATGATAAGTTAT---------GGGGCCTTCTGTAGAGAGTTCTATGAGAACATCTCTAAGGAA--CCACCAAGCTGAATTCTGGCACATAAGCCATAGGAGGTATTTAAGAGTAAATTCTACTGTGATAAAATGTTGCATCAAGAAGTTTAGTAT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46559246 171 -  47448759 ----GGAAAGAGTAAGTGTGGAGAGAGCCTATGGTAAGTTAT---------GGGG-GTTCTGAGGGGAATTCCATGAGAACATCTCTGAGGAACTCTCCCAAGCTGAAGTCTGGCATATAAGCCATAGGAGGCATTTAAGAGTAAATTCTGCCCTGATAAAGTATTGCATCAAAAAATTTAGTAT
i calJac3.chr18                    C 0 C 0
e micMur1.scaffold_873                 27828 2184 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e ponAbe2.chr1                     122641445 3000 - 229942017 M

a score=2100.000000
s hg38.chr1_KI270714v1_random          10455 1 +     41717 G
s panTro4.chr1_GL389124_random          9750 1 +     50403 G
i panTro4.chr1_GL389124_random     C 0 C 0
s nomLeu3.chr12                     57160842 1 + 109391073 G
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               17181 1 -     29987 G
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320431 1 + 227556264 G
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169426 1 - 220367699 g
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389885 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
e micMur1.scaffold_873                 27828 2184 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e calJac3.chr18                     46559417 0 -  47448759 C
e ponAbe2.chr1                     122641445 3000 - 229942017 M

a score=367112.000000
s hg38.chr1_KI270714v1_random          10456 178 +     41717 ggccgggcgtggtggctcatgcctataatcccagcactttgggaggctgaggcaggcagatca--caaggtcaagagttcaagacaagcctggccaatatggtg-aaacccctcctctactaaaaacaca--------------------------------cacaaaaattagctgggcatggtggcgcatgcctgtaatcccagctacttg
s panTro4.chr1_GL389124_random          9751 178 +     50403 ggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatca--caaggtcaagagttcgagacaagcctggccaatatggtg-aaacccctcctctactaaaaacaca--------------------------------cacaaaaattagctgggcatggtggcgcatgccagtaatcccagctacttg
i panTro4.chr1_GL389124_random     C 0 C 0
s nomLeu3.chr12                     57160843 177 + 109391073 ggccgggcgtgatggctcacgcctgtaatcccagcactttgggaagccgaggcaggcagatca--caaggtcaggagtttgagaccagcctggccagtatggtg-aaaccccacctctattaaaaataca---------------------------------aaaaaaattagctgggcatagtggtacatgcctgtaatcccagctacttg
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               17182 178 -     29987 ggccgggcatggtagctcatgcctgtaatcccagcactttgagaggccgaggtgggcagatca--caaggtgaggagttcgagaccagcctggtcaatatggtgaaaaccccgcctctactaaaaataca---------------------------------gaaaaaattagctgggcatggtggtacatgtctgtaatcccacctactcg
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320432 178 + 227556264 ggccgggcatggtagctcatgcctgtaatcccagcactttgagaggccgaggtgggcagatca--caaggtgaggagctcgagaccagcctggtcaatatggtgaaaaccccgcctctactaaaaataca---------------------------------gaaaaaattagctgggcatggtggtgcatgtctgtaatcccacctactcg
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169427 178 - 220367699 ggccgggcatggtagctcatgcctgtaatcccagcactttgagaggccgaggtgggcagatca--caaggtgaggagttcgagaccagcctggtcaatatggtgaaaaccctgcctctactaaaaataca---------------------------------gaaaaaattagctgggcatggtggtgcatgtctgtaatcccacctactcg
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13389886 178 + 130588469 ggccaggcatggtagcttacacctgtaatcccagcactctgagaggccgaggtgggcagatca--caaggtgaggagtttgagaccagcctggtcaatatggtgaaaaccctgtgtctactaaaaataca---------------------------------gaaaaaattagctgggcatggtggtgcatgcctgtaatcccacctactcg
i chlSab2.chr20                    C 0 C 0
s micMur1.scaffold_3829               210786 210 +    229138 ggctgggcgtggtggctcatgcctataatcctagcactctgggaggctgaggcaggaggatcgctcaaggtcaggagttcgaagccagcctgagcaaga--gtg-agactccatctctactaaaaatagaaagaaattaattgaccaactaaaaatatgtatagaaaaacttagctgggcatggcggtgcatgcctgtagtcccacctactcg
i micMur1.scaffold_3829            n 2184 C 0
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e calJac3.chr18                     46559417   0 -  47448759 C
e ponAbe2.chr1                     122641445 3000 - 229942017 M

a score=321296.000000
s hg38.chr1_KI270714v1_random          10634 126 +     41717 ggaggctgagggaggagaattgcttgaacctgggaggtagaggttgcagtgagccgagatggcaccactgcactccagcctgggtgacagagtgagactctgtatcaaaacaaaacaaaaca---aaaa
s panTro4.chr1_GL389124_random          9929 126 +     50403 ggaggctgagggaggagaattgcttgaacctgggaggtagaggttgcagtgagctgagatggcaccactgcactccagcctgggtgacagagtgagactctgtATcaaaacaaaacaaaaca---aaaA
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122644445 123 - 229942017 ggaagctgaggcaggagaattgcttgaatctaggaggtggaggttggagtgagccaagatggtgccactgcactccagcctgggtgacagagtgagactccgtatcaaaaaaaaaaaaaaaa---a---
i ponAbe2.chr1                     M 3000 C 0
s nomLeu3.chr12                     57161020 122 + 109391073 ggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagccaagatggcaccactgcactccagcctggatgacagagtgagactctgtatcaaaaaaaaaaaaaa-------aT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               17360 129 -     29987 ggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtcagccaagatggcgctactgcactccagcctgggtgatagagtgagactccgtaacaaaacaaacaaacaaacataaaa
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320610 129 + 227556264 ggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgtagtcagccaagatggcgctactgcactccagcctgggtgacagagtgagactccgtaacaaaacaaacaaacaaacataaaa
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169605 129 - 220367699 ggaggctgaggcaggagaattgcttgaacctgggagttggaggttgtagtcagccaagatggtgctactgcactccagcctgggtgacagagtgagactccgtaacaaaacaaacaaacaaacataaaa
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13390064 125 + 130588469 ggaggctgaggcaggagaattgcttgaacctgggaggtagaggttgtagtgagccgagatggcgccactgcactccagcctgggtgacagagtgagactccataaca----aaacaaacaaacataaaa
i chlSab2.chr20                    C 0 C 0
s micMur1.scaffold_3829               210996 126 +    229138 gaaggctgaggcagaaggatcgcttgagtccaggagtttgaggttgctgtgagctaggctgacaccacggcactctagcccagttgacagagcaagactctgtctcaaaaaaaaaaaaaaaa---aaaa
i micMur1.scaffold_3829            C 0 n 0
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e calJac3.chr18                     46559417   0 -  47448759 C

a score=15634.000000
s hg38.chr1_KI270714v1_random          10760 8 +     41717 TTTACCAT
s panTro4.chr1_GL389124_random         10055 8 +     50403 TTTACCAT
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122644568 7 - 229942017 -TTAGTAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57161142 8 + 109391073 TTTAGTAT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               17489 8 -     29987 TTTAGTAT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106320739 8 + 227556264 TTTAGTAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99169734 8 - 220367699 tttagtAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13390189 8 + 130588469 TTTAGTAT
i chlSab2.chr20                    C 0 C 0
e micMur1.scaffold_3829               211122 0 +    229138 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e calJac3.chr18                     46559417 0 -  47448759 C

a score=146557.000000
s hg38.chr1_KI270714v1_random          10768 51 +     41717 GCCACTGTTCTTCAACTGTTATATATATGTTAATTATATGTCCCTAGATAA
s panTro4.chr1_GL389124_random         10063 51 +     50403 GCCACTGTTCTTCAACTGTTATATATATGTTAATTATATGTCCCTAGATAA
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122644575 51 - 229942017 GCCACTGTTCTTCAACTGTTATATATGTGTTAATTATATGTCCCTAGATAA
i ponAbe2.chr1                     C 0 I 1276
s nomLeu3.chr12                     57161150 51 + 109391073 GCCACTGCTCTTCAACTGTTATATATGTGTTAATTATATGTCCCTAGATAA
i nomLeu3.chr12                    C 0 I 1263
s rheMac3.chrUn_JH293294               17497 49 -     29987 GCCACAGTTCTTCAACTGTTATATATATGTTAAT--TATGTCCCTAGATAA
i rheMac3.chrUn_JH293294           C 0 I 1277
s macFas5.chr1                     106320747 49 + 227556264 GTCACAGTTCTTCAACTGTTATATATATGTTAAT--TATGTCCCTAGATAA
i macFas5.chr1                     C 0 I 1290
s papAnu2.chr1                      99169742 49 - 220367699 GCCACTGTTCTTCAACtgttatatatatgttaat--tatgtCCCTAGATAA
i papAnu2.chr1                     C 0 I 1280
s chlSab2.chr20                     13390197 49 + 130588469 GCCACTGTTCTTCAACTGTTATATATATGTTAAT--CATGTCCCTAGATAA
i chlSab2.chr20                    C 0 I 1299
s calJac3.chr18                     46559417 51 -  47448759 GCCACTGTTCTTCAACTGTTACATATAtgtcaattatatgtccctacataa
i calJac3.chr18                    C 0 I 1258
e micMur1.scaffold_3829               211122  0 +    229138 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=2030311.000000
s hg38.chr1_KI270714v1_random          10819 663 +     41717 ATTTTTTGGGAGCTGGGCCTCCAGCTGGGATACTCTCTGGATGAGACTCTTCAGGTCCTTTTTGGCCTGAAGTCCTGGAGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACAACTCATCCTCATCAGTGACACTATGAGGTGAAGACCCCTCCAGG-----------------GTGTCAGGAGCTCTCAGCTTCCAGGGTCTTTCCAGACTAGAAGAATAATCACTTGTAACTGAGAGGGACTGGACCCGGCTCTTGAAGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCATAGGACCCAGATGTTTTCTGACTTTCCATATACCCAGAACTCTTCCTGCTTCCCTAGTTCATTCTCCAAGGGCTTCCTCTCAGAGGAACTAGCCAGCGTTCCGCCCCGGCGCCCCTGCTCAGAGCACAGCCCCTCCATCAGGACCATTTCCTTGCGGCTGTTGTGCTCCTCACGCTCTGAAAAAAGACAAAGATGTCTTCCTAATTAAAAGTTGGATGTGCTGTTGTGGCCACTGCCTTTGAGAGGAGGCAGGTTTGGTCATGAGGACAATAATTACTAGGGAAAAAGGTGAAGTCGTACTTTATTCAACcctgacactgtgctaggcattcaaatacagtatttcttatcctccttata--
s panTro4.chr1_GL389124_random         10114 663 +     50403 ATTTTTTGGGAGCTGGGCCTCCAGCTGGGATACTCTCTGGAGGAGACTCTTCAGGTCCTTTTTGGCCTGAAGTCCTGGAGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACACCTCATCCTCATCAGTGACACTATGAGGTGAAGACCCCTCCAGG-----------------GTGTCAAGAGCTCTCAGCTTCCAGGGTCTTTCCAGACTAGACGAATAATCACTTGTAACCAAGAGGGACCGGACCCGGTTCCTGAGGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCATAGGACCCAGATGTTTTCTGACTTTCCATATACCCAGAACTCTTCCTGCTTCCCTAGTTCATTCTCCAAGGGCTTCCTCTCAGAGGAACTAGCCAGCGTTCAGCCCTGGCACCCCTGCTCAGAGCACAGCCCCTCCATCAGGACCATTTCCTTGAGGCTGTTGTGCTCCTCACGCTCTGAAAAAAGACAAAGATGTCTTCCTAAATAAAAGTTGTATGTGCTGTTGTGGCCACTGCCTTTGAGAGGAGGCAGGTTTGGTCATGAGGACAATAATTACTACGGAAAAAGGTGAAGTCGTACTTTATTCAACcctgacactgtgctaggcattcaaatacagtatttcttatcctccttata--
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122645902 673 - 229942017 ATTTTTTGGGAGCTGGGCCTCCAGTGGGGATACTCTCTGGATGAGACTCTCCAGGTCCTTTTTGGCCTGAAGCCCAGGCGAGCAGAAAGCCCCAGTGCCATCAGACAGCCACACCTCATCCTCATCAGGGACACTATGAGGTGAAGACCCCTCCGAGGTGAAGACCCCTCCAATGTGCCAACAGCTCTCAGCTTCCGGGGTCTTTCCAGACTAGACGAATAATCACTTGTAACCGAGAGGGACCAGACCTGGCTCTTGAGGTTCTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTCTGATGTCCTTTCATAGGACCGAGATGTTTTCTGACTTTCCATATACCCAGAACTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCCTCTTAGAGGAACTAGCCA-------GCCCCAGCACCCCTGCTCAGAGCACAGCCCCTCCATCAGGATCACTTCCTTGAGGCTGTTGTGCTCCTCACACTCTGAAAAAAGCCAAAGATGTCTTCCTAAATAAAAGTTGGATGTGCTGTTGTGGCCACTGCCTTTGAGAGGAGGCAGGTTTGGTCATGAGGACAATAATTACTAGGGAAAAAGTTGAATTAGTACTTTATTCAACcctgacactgtactaggcattcaaatacaatatttcttatcctccttata--
i ponAbe2.chr1                     I 1276 C 0
s nomLeu3.chr12                     57162464 663 + 109391073 ATTTTTTGGGAGCTGGGCCTCCAGCTGGGATACTCTCTGGATGAGACTCTCCAGGTCCTTTTTGGCCTGAAGCCTTGGAGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACCCCTCATCCTCATCAGGGACACTATGAGGTGAAAACCCCTCCAAG-----------------GTGCCAACAGCTCTCAGCTTCCGGGGTCTTTCCAGACTAGATGAATAATCACTTGTAACTGAGAGGGACCGGACCCGGCTCTTGAGGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCGTAGGACCAAGATGTTTTCTGACTTTCCATATACCCGGAACTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCCTCTCGGAGGAACTAGCCAGTGTTGGGCCCCGGCGCCCCTGCTCAGAGCACAGCCCCTCCATCAGGACCATTTCCTTGAGGCTGTTGTGCTCCTCACACTCTGAAAAAAGACAAAGATGTCTCCCTAAATAAAAGTTGGATGTGCTGTTGTGGCCACCGCCTTTGAGAGGAGGCAGGTCTGGTCATGAGGACAATAATTACTAGGGAAAAAGTTGAAGTAGTACTTTATTCAACcctgacactgtactaggcattcaaatacaatatttcttatcctccttata--
i nomLeu3.chr12                    I 1263 C 0
s rheMac3.chrUn_JH293294               18823 660 -     29987 ATTTTTTGGGAGCTGGGCCTCCAGCTGGGATACTCTCTGGATGAGACTTTCCAGGTCCTTTTTGGCCTGAAGCCCTGGTGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACCCCTCATCCTCATCAGGGACACTGTGAGGTGAAGACCCCTCCAGG-----------------GTGCCAACAGCTCTCAGCTTCCGGGGTCTTTCCAGACTAGACGAATAATCACTTGTAACCGAGAGGGACCGGACCCGGCTCTTGAGGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCGTAGGACCAAGATGTTTTCTGACTTTCCATATACCCGGAAGTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCCTCTTGGAGGAACCAGCCAGCGTTGAGCCCCGGCGCACCTGCTCAGAGCACAGCCCCTCCATCAGGACCATCTCCTTGAAGCTGTTGTGCTCCTCACACTCTGAAAAAGGACAAAGATGTCTTCCTAAATAAAAGTTGGATGTGCTATTGTGGCCACTGCCTCTGAGAGAAGGCAAATTTGGTCGTGAGGAGAATAATTACTAGAGAAAAAGTT---GAAGTACTTTATTCAACcctgacaccgtactgggtattcgaatacaatatttcttatcttccttata--
i rheMac3.chrUn_JH293294           I 1277 C 0
s macFas5.chr1                     106322086 660 + 227556264 ATTTTTTGGGAGCTGGGCCTCCAGCTGGGATACTCTCTGGATGAGACTTTCCAGGTCCTTTTTGGCCTGAAGCCCTGGCGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACCCCTCATCCTCATCAGGGACACTGTGAGGTGAAGACCCCTCCAGG-----------------GTGCCAACAGCTCTCAGCTTCCGGGGTCTTTCCAGACTAGACGAATAATCACTTGTAACCGAGAGGGACCGGACCCGGCTCTTGAGGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCGTAGGACCAAGATGTTTTCTGACTTTCCATATACCCGGAAGTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCCTCTTGGAGGAACCAGCTAGCGTTGAGCCCCGGCGCACCTGCTCAGAGCACAGTCCCTCCATCAGGACCATTTCCTTGAGGCTGTTGTGCTCCTCACACTCTGAAAAAGGACAAAGATGTCTTCCTAAATAAAAGTTGGATGTGCTATTGTGGCCACTGCCTCTGAGAGAAGGCAAGTTTGGTTGTGAGGAGAATAATTACTAGAGAAAAAGTT---GAAGTACTTTATTCAACcctgacaccgtactgggtattcgaatacaatatttcttttcttccttata--
i macFas5.chr1                     I 1290 C 0
s papAnu2.chr1                      99171071 663 - 220367699 ATTTTTTGGGAGCTGGGCCTCCAGCTGGGATACTCTCTGGATGAGACTTTCCAGGTCCTTTTTGGCCTGAAGCCCTGGTGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACCCCTCATCCTCATCAGGGACACTGTGAGGTGAAGACCCCTCCAGG-----------------GTGCCAACAGCTCTCAGCTTCCGGGGTCTTTCCAGACTAGACGAATAATCACTTGTAACCGAGAGGGACCGGACCCGGCTCTTGAGGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCGTAGGACCAAGATGTTTTCTGACTTTCCATATACCCGGAAGTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCCTCTTGGAGGAACCAGCCAGCGTTGAGCCCCGGCGCCCCTGCTCAGAGCACAGCCCCTCCATCAGGACCATTTCCTTGAGGCTGTTGTGCTCCTCACACTCTGAAAAAGGACAAAGACGTCTTCCTAAATAAAAGTTGGATGTGCTATTGTGGCCACTGCCTCTGAGAGAAGGCAAGTTTGGTCGTGAGGACAATAATTACTAGAGAAAAAGTTGAAGAAGTACTTTATTCAACCCTGACACCGTACTGGGTATTCGAATACAATATTTCTTATCTTCCTTATA--
i papAnu2.chr1                     I 1280 C 0
s chlSab2.chr20                     13391545 662 + 130588469 ATTTTTTGGGAGCTGGGCCTCTAGCTGGGATACTCTCTGGATGAGACTTTCCAGGTCCTTTTTGGCCTGAAGCCCTGGCGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACCCCTCATCCTCATCAGGGACACTGTGAGGTGAAGACCCCTCCAGG-----------------GTGCCAACAGCTCTCAGCTTCCGGGGTCTTTCCAGACTAGACGAATAATCACTGGTAACTGAGAGGGACCGGACCCGGCTCTTGAGGTTTTGAATGACCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCGTAGGACCAAGATGTTTTCTGACTTTCCATATACCCGGAAGTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCCTCTTGGAGGAACCAGCCAGCGTTGAGCCCCGGCGCCCCTGCTCAGAGCACAGCCCCTCCATCGGGACCATCTCCTTGAGGCTGTTGTGCTCCTCACACTCTGAAAAAGGACAAAGATGTCTTCCTAAATAAAAGTTGGATGTGCTATTGTGGCCACTGCCTTTGAGAGAAGGTAAGTTTGGTCGTGAGGACAATAATTACTAGAGAAAAAGTTGAAGAAGTACTTTATTCAACcctgacact-tactcggtattcaaatacaatatttcttatcttccttata--
i chlSab2.chr20                    I 1299 C 0
s calJac3.chr18                     46560726 665 -  47448759 ATTTTTTGGGAGCTGGGCTTCCAGCTGGGATACTCTCTGGATGAGACTCTCCAGATCCTTTGTGGCCTGAAGCCCTGGAGAGTAGAAAGCCCCAGTGCCATCAGACAGCCACCCCTCATCCTCATCGGTGACACTATGAGGTGAAGAGCCCTCCAGG-----------------GTGCCAACAGCCCTCAGCTTCCGGGGTCTTTCCAGACTAGATGAATAGTCACTTGTAACTGAGAGGGACCGGACCCGGCTCTTGAGGTTTTGAATGATCTTGTTGGCATTCTGCAGCTGGGCCTTCAGATCTTTGATGTCCTTTCGTAGGACACAGATGTCTTCTGACCTTCCATAGACCCGGAACTCTTCCTGCTTCCCTAGCTGGTTCTCCAAGGGCTTCTTCTCAGAGGAACTAGCCCGTGTTGAGCCCCAGTGCCCCTGCTCAGAGCACAGCCCCTCCATCGGACCCATTTCCTTGAGGCTGTTGTGTTCTTCACACTCTGAAAAGAGACAAAGATGTCTTCCTAAATAAAAGTTGGACGTGCTGTTGTGGCCACTGCCTTTGAGAGGAGGCAGGTTTGGTCATGAGGACAATAATTACTAGGGAAAAAGTTGAAGCAGTACTTTATTCACCcctgacactgcactaggcattcaaatataatatttcttatcctcccgacagc
i calJac3.chr18                    I 1258 C 0
e micMur1.scaffold_3829               211122   0 +    229138 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=7821.000000
s hg38.chr1_KI270714v1_random          11482 2 +     41717 cc
s panTro4.chr1_GL389124_random         10777 2 +     50403 cc
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646575 2 - 229942017 cc
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163127 2 + 109391073 cc
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19483 2 -     29987 cc
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322746 2 + 227556264 cc
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171734 2 - 220367699 CC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392207 2 + 130588469 cc
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561391 2 -  47448759 cc
i calJac3.chr18                    C 0 C 0
s micMur1.scaffold_873                 30012 2 -    433431 tc
i micMur1.scaffold_873             I 2184 I 42
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=104411.000000
s hg38.chr1_KI270714v1_random          11484 37 +     41717 cataagttaggtttcaccactctctattttactgact
s panTro4.chr1_GL389124_random         10779 37 +     50403 cataagttaggtttcaccactctctattttactgact
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646577 37 - 229942017 tacaagttaggtttcatcactttctattttactgacc
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163129 37 + 109391073 tacaagttaggtttcatcactttctgttttactgact
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19485 37 -     29987 tacaagttaggtatcatcaccttctattttactgact
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322748 37 + 227556264 tacaagttaggtatcatcaccttctattttactgact
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171736 37 - 220367699 TACAAGTTAGGTATCATCACCTTCTATTTTACTGACT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392209 37 + 130588469 tacaagttaggtatcatcactttctattttactgact
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561393 37 -  47448759 tgcaaatcaggtatcatcactttctattttaccaact
i calJac3.chr18                    C 0 C 0
e micMur1.scaffold_873                 30014 42 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=7800.000000
s hg38.chr1_KI270714v1_random          11521 1 +     41717 g
s panTro4.chr1_GL389124_random         10816 1 +     50403 g
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646614 1 - 229942017 g
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163166 1 + 109391073 g
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19522 1 -     29987 g
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322785 1 + 227556264 g
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171773 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392246 1 + 130588469 g
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99118891 1 - 215897965 g
i nasLar1.chr1                     N 0 I 752
s rhiRox1.KN295041v1                   32001 1 +    640207 g
i rhiRox1.KN295041v1               N 0 I 1086
s calJac3.chr18                     46561430 1 -  47448759 g
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     32916 1 +    584576 g
i saiBol1.JH378335                 N 0 I 763
s otoGar3.GL873592                   8069649 1 -   9938236 g
i otoGar3.GL873592                 N 0 I 841
e micMur1.scaffold_873                 30014 42 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I

a score=7200.000000
s hg38.chr1_KI270714v1_random          11522 2 +     41717 gg
s panTro4.chr1_GL389124_random         10817 2 +     50403 gg
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646615 2 - 229942017 gg
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163167 2 + 109391073 gg
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19523 2 -     29987 gg
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322786 2 + 227556264 gg
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171774 2 - 220367699 Gg
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392247 2 + 130588469 gg
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561431 2 -  47448759 gg
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30014 42 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=-540.000000
s hg38.chr1_KI270714v1_random          11524 1 +     41717 -g
s panTro4.chr1_GL389124_random         10819 1 +     50403 -g
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646617 1 - 229942017 -g
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163169 1 + 109391073 -g
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19525 1 -     29987 -g
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322788 1 + 227556264 -g
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171776 1 - 220367699 -g
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392249 1 + 130588469 -g
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561433 1 -  47448759 -g
i calJac3.chr18                    C 0 C 0
s micMur1.scaffold_873                 30056 1 -    433431 c-
i micMur1.scaffold_873             I 42 I 670
e nasLar1.chr1                      99118892 752 - 215897965 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=343450.000000
s hg38.chr1_KI270714v1_random          11525 115 +     41717 aaaccaaaacttaaagagaggtagtaaaccagcttgttctagatcactcaaactagcacatggcagagcctgaattcaaatcctccaacgtcctgtgttcattccacacacactg
s panTro4.chr1_GL389124_random         10820 115 +     50403 aaaccaaaactcaaagagaggtggtaaaccagcttgttctagatcactcaaactagcacatggcagagccagaattcaaatcctccaatgtcctgtgttcattccacacacactg
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646618 115 - 229942017 aaaccaaaacgtaaagagaggtggtaaactagcttgttctagatcactcaaactagcacatggcagagccaaaattcaaatcctccaatgtcctgtgttcattccacacacgctg
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163170 115 + 109391073 aaaccaaaacttaaagagaggtggtaaactagcttgttctagatcactcaaactagcacatggcagagccagaattcaaatcctccaatgtcctgtgttcattccacACACACTG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19526 115 -     29987 aaaccaaaacttaaagagaggtggtaaactagcttgttccagatcactcaaactagcacatggcagaaacagaattcaaatcctccaatgtcctgtgttcgttccacAAACACTG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322789 115 + 227556264 aaaacaaaactcaaagagaggtggtaaactagcttgttccagatcactcaaactagcacatggcagaaccagaattcaaatcctccaatgtcttgtgttcgttccacAAACACTG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171777 115 - 220367699 aaaacaaaactcaaagaGAGGTGGTAAACTAGCTTGTTCCAGATCACTCAAACTAGCACATGGCAGAACCAGAATTCAAATCCTCCAATGTCTTGTGTTCGTTCCACACACACTG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392250 115 + 130588469 aaaccaaaacttaaagagaggtggtaaactagcttgttccagatcactcaaactagcacatggcagaaccagaattcaaatcctccaatgtcctgtgttcgttccacAAACACTG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561434 110 -  47448759 aaaccaaaacttaaagacag---gtaaaccagcttgttctaggtcactcaaactagcacagggcagagccagaattcaaattctttaatgtcctgtgttcactccac--acactg
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=80083.000000
s hg38.chr1_KI270714v1_random          11640 23 +     41717 atgtttct----cAAGACATTAACATG
s panTro4.chr1_GL389124_random         10935 23 +     50403 atgtttct----cAAGACATTAACATG
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646733 23 - 229942017 ATGTTTCT----TAAGACATTAACATG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163285 23 + 109391073 GTGTTTCT----TAAGACATTAACACG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19641 23 -     29987 ATGTTTCT----TAAGACATTAACATG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322904 23 + 227556264 ATGTTTCT----TAAGACATTAACATG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171892 23 - 220367699 ATGTTTCT----TAAGACATTAACATG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392365 23 + 130588469 ATGTTTCT----TAAGACATTAACATG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561544 22 -  47448759 ATGTTTCT----TAAGACATTAACAT-
i calJac3.chr18                    C 0 C 0
s tarSyr2.ABRT02338731v1                6130 27 -     12208 ATGTTTCTTAAGTAAGACATTCACGTG
i tarSyr2.ABRT02338731v1           N 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=450.000000
s hg38.chr1_KI270714v1_random          11663 1 +     41717 C
s panTro4.chr1_GL389124_random         10958 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646756 1 - 229942017 G
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163308 1 + 109391073 G
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19664 1 -     29987 G
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322927 1 + 227556264 G
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171915 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392388 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
s tarSyr2.ABRT02338731v1                6157 1 -     12208 G
i tarSyr2.ABRT02338731v1           C 0 I 440
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e calJac3.chr18                     46561566 0 -  47448759 C
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=164221.000000
s hg38.chr1_KI270714v1_random          11664 59 +     41717 CCTTATCTAGTTAGGATAGCCACAAGAATGTAGGACAAGCTATTTCTGCATGCTGCAAG
s panTro4.chr1_GL389124_random         10959 59 +     50403 CCTTATCTAGTTAGGATAGCCACAAGAATATAGGACAAGCTATTTCTGCATGCTGCAAG
i panTro4.chr1_GL389124_random     C 0 C 0
s ponAbe2.chr1                     122646757 59 - 229942017 CCTTATCTATTTAGGATGGCCACAAGAACATAGGAAAAGCTATTCCTGCATGCTGAAAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163309 59 + 109391073 CCTTATCTATTTAGGATGGCCACAAGAATGTAGGACAAGCTATTACTGCATGCTGAAAG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19665 59 -     29987 CCTTATCTATTTAGGATGGCCACAAGAATGTAGGACAAGCTATTCCTGCATGCTAAAAG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322928 59 + 227556264 CCTTATCTATTTAGGATGGCCACAAGAATGTAGGACAAGCTATTCCTGCATGCTAAAAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171916 59 - 220367699 CCTTATCTATTTAGGATGGCCACAAGAATGTAGGACAAGCTATTCCTGCATGCTGAAAG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392389 59 + 130588469 CCTTATCTATTTAGGATGGCCACAAGAATGTAGGACAAGCTATTCCTGCATGCTGAAAG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561566 46 -  47448759 -------------GAATGGCCACAAGAATACAGGAAGAGCTATTCCTGCAGGCTGAAAG
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e tarSyr2.ABRT02338731v1                6158 440 -     12208 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=1167741.000000
s hg38.chr1_KI270714v1_random          11723 313 +     41717 TTTAATGCTCTCTAAAGTTTACTATAATTTAAAAGTTTATTGGGTTACCACTGTGTGAAAAATAGGCATAGGAAAATAAGACTTCGAATAAATATATCAGCATGTTAACATCAGTGTATTGGGGCAGTGGTAGTCAGaatgaga--act----aatccacagcattttacc-tgatgccagacactgttctaaagcattttataagaatttactcatttaattcacattagtacctgatggggtaggtagttcctttattactattttaacatatgaaga-aactggggcataggaaagcttacaaattgggatttgaacc
s panTro4.chr1_GL389124_random         11018 313 +     50403 TTTAATGCTCTCTAAATTTTACTATAATTTAAAAGTTTACTGGGTTACCACTGTGTGAAAAATAGGCAAAGGAAAATAAGACTTCGAATAAATATATCAGCATGTTAACATCAGTGTATTGGGGCAGTGGTAGTCAGAATGAGA--ACT----AATCCACAGCATTttacc-tgatgccagacactgttctaaagcattttataagaatttactcatttaattcacattagtacctgatggggtaggtagttcctttattactattttaacatatgaaga-aactggggcataggaaagtttacaaattgggatttgaacc
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365009 313 -    451211 TTAAATGCTCTCtaaattttactataatttaaaaGTGTATTGGGTTACAACTGTGTGAAAAATAGGCATAGGAAAATAAGACTTTGAATAAATATATCAGCATGTTAACATCAGTGTATTAGGGCAGTGGTAGTCAGAATGAGA--ACT----AATCCATGGCATTTTACc-agatgccaggcactgttctaaagcattttataagaatttactcatttaattgACATTAGTACCTGATGGGGTAGGTAGTtcctttattactattttaacatATGAAGA-AACTGGGGCATAGGAAAGTTTACAAATTGGGATTTGAACC
i panPan1.JH650218                 N 0 C 0
s ponAbe2.chr1                     122646816 314 - 229942017 TTTAATGCTTTCTAAATTTTACTATAATTTAAAAGTTTATTGGGTTACAACTGTGTGAAAAATAGGCATAGGAAAATAAGACTTCGAATAAATATATCAGCATGTTAACATCACTGTATTAGGGCAGTGGTAGTCAGTATGAGA--ACT----AATCCATGGCATTttacc-agatgccaggcactgttctaaagcattttataagaatttactcatttaattgacattagtacctgatggggtaggtagttcctttattactattttaacatatgaagaggactggggcataggaaagttTTCAAACTGGGATTTAAACC
i ponAbe2.chr1                     C 0 I 225
s nomLeu3.chr12                     57163368 313 + 109391073 TTTAATGCTTTTTAAATTTTACTATAATTTAAAAGTTTATTGGGTTACAACTGTGTGAAAAATAGGCATAGGAAAATAAGACTTCAAATAAATGTATCAGCATGTTAACATCAGTGTATTAGGGCAGTGGTAGTCAGAATGAGA--ACT----AATCCATGGCATTttacc-agatgccaggcactgttctaaagcattttataagaatttactcatttaattgacattagtacctgatggggtaggtagttcctttattactattttaacatatgagga-aactggggcataggaaagttttcaaactgggatttgaacc
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               19724 313 -     29987 TTAAATGCTCTCTAAAGTTTCCTATAATTTAAAAGTTTATTGGGTTACAACTGTGTGAAAAATAGGCATAAGAAAATAAGACTTTGAATAAATATATCAGCATGTTAACGTCAGTGTATTAAGGCAGTGGTAGTCAGAATAAGA--ACT----AATCCATGGCATTttacc-agatgccaggcactgttctaaagcattttataagaatttactcatttaattgacattggtacctgatggggtaggcagttcctttgttactattttaacatatgaaga-aaccggggcacaggaaagtttacaaattgggatttgaacc
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106322987 313 + 227556264 TTAAATGCTCTCTAAAGTTTCCTATAATTTAAAAGTTTATTGGGTTACAACTGTGTGAAAAATAGGCATAAGAAAATAAGACTTTGAATAAATATATCAGCATGTTAACATCAGTGTATTAAGGCAGTGGTAGTCAGAATAAGA--ACT----AATCCATGGCATTttacc-agatgccaggcactgttctaaagcattttataagaatttacttatttaattgacattggtacctgatggggtaggcagttcctttgttactattttaacatatgaaga-aaccggggcacaggaaagtttacaaattgggatttgaacc
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99171975 314 - 220367699 TTAAATGCTCTCTAAATTTTcctataatttaaaagtttattggGTTACAACTGTGTGAAAAATAGGCATAAGAAAATAAGACTTTGAATAAATATATCAGCATGTTAACATCAGTGTATTAAGGCAGTGGTAGTCAGAATAAGA--ACT----AATCCATGGCATTTTACctagatgccaggcactgttctaaagcattttataagaatttacttatttaattgaCATTGGTACCTGATGGGGTAGGCAGTtcctttattactattttaacatATGAAGA-AACCGGGGCACAGGAAAGTTTACAAATTGGGATTTGAACC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392448 313 + 130588469 TTAAATGCTCTCTAAATTTTCCTATAATTTAAAAGTTTATTGGGTTACAACTGTGTGAAAAATAGGCATAAGAAAATAAGACTTTGAATAAATATATCAGCATGTTAACGTCAGTGTATTAAGGCAGTGGTAGTCAGAATGAGA--ACT----AAACCATGGCATTttacc-agatgccaggcactgttctaaagcattttataagaatttactcatttaattgacattggtacctgatggggtaggtagttcctttattactattttaacatatgaaga-aactggggcacaggaaagtttacaaattgggatttgaacc
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561612 316 -  47448759 TGTAGTGCTCTCTAAATTTTACTATAATTGAAAAGTTTGTTGGGTTACAACTGTGTGAAAAATAGGGATATGAAAATAAGACTTTGAATAAATATATCGGCATCTTAACACTGGTGCATTAGA--AGTGGTAGTCAGAATGAGATTACTTCTCAATCCA-GGCATTttacc-agctgcgagggactgttctaaagtgttgtataagaatttactcattaaattgacataagtacctgatggggtaggtagttcctttattgctattttaacatatgaaga-aactggggcataagagagtttgcgaattgagatttgaatc
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e tarSyr2.ABRT02338731v1                6158 440 -     12208 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=67068.000000
s hg38.chr1_KI270714v1_random          12036 17 +     41717 aaccagtctggccccag
s panTro4.chr1_GL389124_random         11331 17 +     50403 aaccagtctggccccag
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365322 17 -    451211 AACCAGTCTGGCCCCAG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647355 17 - 229942017 aaccagtctggccccag
i ponAbe2.chr1                     I 225 C 0
s nomLeu3.chr12                     57163681 17 + 109391073 aaccagtctggccccag
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20037 17 -     29987 aaccagtctggccgcag
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323300 17 + 227556264 aaccagtctggccgcag
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172289 17 - 220367699 AACCAGTCTGGCCGCAG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392761 17 + 130588469 aaccagcctggccccag
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561928 17 -  47448759 aaccagtctggccccaa
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     72497 2962 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e tarSyr2.ABRT02338731v1                6158 440 -     12208 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=22616.000000
s hg38.chr1_KI270714v1_random          12053 8 +     41717 gatctttt
s panTro4.chr1_GL389124_random         11348 8 +     50403 gatctttt
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365339 8 -    451211 GATCTTTT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647372 7 - 229942017 gatc-tgt
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163698 8 + 109391073 gatcttgt
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20054 8 -     29987 gatctttt
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323317 8 + 227556264 gatctttt
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172306 8 - 220367699 GATCTTTT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392778 8 + 130588469 gatctttt
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561945 8 -  47448759 ggtatttt
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     75459 8 -    347432 GGTCACTG
i tupBel1.scaffold_123997.1-347432 I 2962 I 278
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e tarSyr2.ABRT02338731v1                6158 440 -     12208 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=153905.000000
s hg38.chr1_KI270714v1_random          12061 43 +     41717 ctcttaactgccacactacactTCCTCAAGAATGAGAGAGACT
s panTro4.chr1_GL389124_random         11356 43 +     50403 ctcttaactgccacactacactTCCTCAAGAATGAGAGAGACT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365347 43 -    451211 CTCTTAACTGCCACACTACACTGCCTCAAGAATGAGAGAgatt
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647379 41 - 229942017 ctctaaactg-cacactacactg-CTCAAGAATGAGAGAGATT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163706 43 + 109391073 ctcttaactgccacactacactgCCTCAAGAATGAGAGAGATT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20062 43 -     29987 ctcttaactgccacactacactgCCTCAAGAATAAGAGAGATT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323325 43 + 227556264 ctcttaactgccacactacactgCCTCAAGAATAAGAGAGATT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172314 43 - 220367699 CTCTTAACTGCCACACTACACTGCCTCAAGAATGagagagaca
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392786 43 + 130588469 ctcttaactgccacactacactgCCTCAAGAATGAGAGAGATA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561953 43 -  47448759 ctcttaactgctatgctatactgCCTCAGGAATGAGAAAGATT
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e tarSyr2.ABRT02338731v1                6158 440 -     12208 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=14695.000000
s hg38.chr1_KI270714v1_random          12104 3 +     41717 GTG
s panTro4.chr1_GL389124_random         11399 3 +     50403 GTG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365390 3 -    451211 gtg
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647420 3 - 229942017 ATG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163749 3 + 109391073 GTG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20105 3 -     29987 GTG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323368 3 + 227556264 GTG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172357 3 - 220367699 gtg
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392829 3 + 130588469 GTG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561996 3 -  47448759 GTG
i calJac3.chr18                    C 0 C 0
s tarSyr2.ABRT02338731v1                6598 3 -     12208 GTG
i tarSyr2.ABRT02338731v1           I 440 N 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=328330.000000
s hg38.chr1_KI270714v1_random          12107 83 +     41717 TTTTTCTTCTCTTCTGGTTTTCAATGTGGTGGGTGGCCCTATGGTTGTAGTCCTTTTATAATGCAAAACAAAATTATTTTTAA
s panTro4.chr1_GL389124_random         11402 83 +     50403 TTTTTCTTCTCTTCTGGTTTTCAATGTGGTGGGTGGCCCTATGGTTGTAGTCCTTTTATAATGCAAAACAAAATTATTTTTAA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365393 83 -    451211 tttttcttctcttctggttTTCAGTGTGGTGGGTGGCCCTATAGTTGTAGTCTTTTtataatgcaaaacaaaattatttttaa
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647423 83 - 229942017 TTTTTCTTCTCTTCTGGTTTTCAGTGTGGTGGGTGGCCCTATAGTTGTAGTCTTTTTATAATGCAAAACAAAATTATGTTTAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163752 83 + 109391073 TTTTTCTTCTCTTCTGGTTTTCAATGTGGTGGGTGGCCCTATAGTTGTAGTCTTTTTATAGTGCAAAACAAAATTATTTTTAA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20108 83 -     29987 TTTTTCTTCTCTTCTGGTTTTCAATGTGGTGGGTGGCCCTATAGTTGTAGTCCTTTTATAATGCAAAACAAAATTATTTTTAA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323371 83 + 227556264 TTTTTCTTCTCTTCTGGTTTTCAATGTGGTGGGTGGCCCTATAGTTGTAGTCCTTTTATAATGCAAAACAAAATTATTTTTAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172360 83 - 220367699 tttctcttctcttctggttTTCAATGTGGTGGGTGGCCCTATAGTTGTAGTCCTTTtataatgcaaaacaaaattatttttaa
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392832 83 + 130588469 TTTTTCTTCTCTTCTGGTTTTCAACATGGTGGGTGGCCCTATAATTGTAGTCCTTTTATAATGCAAAACAAAATTATTTTTAA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46561999 83 -  47448759 TTTTTCTTCTCTTCTGGTTTTCAATGTGGTGAGTGGCCCTATAGCTGTGGTCCTTTCATAATGGAAAACAAAATTATGTTTAA
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30057 670 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=5500.000000
s hg38.chr1_KI270714v1_random          12190 1 +     41717 C
s panTro4.chr1_GL389124_random         11485 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365476 1 -    451211 c
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647506 1 - 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163835 1 + 109391073 C
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20191 1 -     29987 C
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323454 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172443 1 - 220367699 c
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392915 1 + 130588469 C
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562082 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
s micMur1.scaffold_873                 30727 1 -    433431 C
i micMur1.scaffold_873             I 670 I 299
e nasLar1.chr1                      99118892 752 - 215897965 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=308586.000000
s hg38.chr1_KI270714v1_random          12191 84 +     41717 TTACAGTTTGCATGTTTCCAAAACCTCATGTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAATCAGTTGGCTAGAACTTTA
s panTro4.chr1_GL389124_random         11486 84 +     50403 TTACGGTTTGCATGTTTCCAAAACCTCATGTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAATCAGTTGGCTAGAACTTTA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365477 84 -    451211 tcagGGTTTGCATGTTTCCAAAACCTCTTCTGGTCTCTTAGTAGGCCTTAGTATTTCTATAATAATCAGTTGGATGgaacttta
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647507 84 - 229942017 TTACGGTTTGCATGTTTCCAAAACCTCATCTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAATCAGTTGGATAGAACTTTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163836 84 + 109391073 TTATAGTTTGCATGTTTCTAAAACCTTATCTGGTCTCTAAGTCGGCCTTAGTATTTCTATAATAATCAGTTGGATAGAatttta
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20192 84 -     29987 TTAGAGTTTGCATGTTTCCAAAACCTTATCTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAGTCAGTTGGATAGAACTTTA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323455 84 + 227556264 TTAGAGTTTGCATGTTTCCAAAACCTTATCTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAGTCAGTTGGATAGAACTtta
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172444 84 - 220367699 ttagaGTTTGCATGTTTCCAAAACCTTATCTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAGTCAGTTGGATAgaacttta
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13392916 84 + 130588469 TTAGAGTTTGCATGTTTCCAAAACCTCATCTGGTCTCTAAGCAGGCCTTAGTATTTCTATAATAGTCTGTTGGCTAGAACTTTA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562083 84 -  47448759 TGATGGTATGCACGTTTGCAAAACCTCATCTGGTCTCTAAGTAGGCCTTAGTATTTCTATAATAGTTAATTGGATAGAACTTCA
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99118892 752 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=1638.000000
s hg38.chr1_KI270714v1_random          12275 3 +     41717 tat
s papAnu2.chr1                      99172528 3 - 220367699 tat
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393000 3 + 130588469 tat
i chlSab2.chr20                    C 0 I 12
s nasLar1.chr1                      99119644 3 - 215897965 tat
i nasLar1.chr1                     I 752 I 333
e panPan1.JH650218                    365561 0 -    451211 C
e micMur1.scaffold_873                 30728 299 -    433431 I
e rheMac3.chrUn_JH293294               20276 0 -     29987 C
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e calJac3.chr18                     46562167 0 -  47448759 C
e macFas5.chr1                     106323539 0 + 227556264 C
e rhiRox1.KN295041v1                   32002 1086 +    640207 I
e nomLeu3.chr12                     57163920 0 + 109391073 C
e ponAbe2.chr1                     122647591 0 - 229942017 C
e panTro4.chr1_GL389124_random         11570 0 +     50403 C

a score=29280.000000
s hg38.chr1_KI270714v1_random          12278 16 +     41717 tattattattattatt
s panTro4.chr1_GL389124_random         11570 10 +     50403 ------tattattatt
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365561 10 -    451211 ------tattattatt
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647591 10 - 229942017 ------TATTATTATT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163920 13 + 109391073 ---tattattattatt
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20276 13 -     29987 ---tattattattatt
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323539 13 + 227556264 ---tattattattatt
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172531 16 - 220367699 tattattattattatt
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393015 16 + 130588469 tattattattattatt
i chlSab2.chr20                    I 12 C 0
s calJac3.chr18                     46562167  4 -  47448759 ------------TATT
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     32917 763 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=11745.000000
s hg38.chr1_KI270714v1_random          12294 3 +     41717 att
s panTro4.chr1_GL389124_random         11580 3 +     50403 att
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365571 3 -    451211 att
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647601 3 - 229942017 AGT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163933 3 + 109391073 att
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20289 3 -     29987 att
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323552 3 + 227556264 att
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172547 3 - 220367699 att
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393031 3 + 130588469 att
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562171 3 -  47448759 ATT
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     33680 3 +    584576 ATC
i saiBol1.JH378335                 I 763 I 156
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=23410.000000
s hg38.chr1_KI270714v1_random          12297 8 +     41717 attattaG
s panTro4.chr1_GL389124_random         11583 8 +     50403 attattaG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365574 8 -    451211 gttattag
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647604 8 - 229942017 AGTAGTAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163936 8 + 109391073 gttattaG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20292 8 -     29987 attattaG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323555 8 + 227556264 attattaG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172550 8 - 220367699 attattag
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393034 8 + 130588469 atCATCAT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562174 8 -  47448759 ATTATTAG
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75467 278 -    347432 I
e saiBol1.JH378335                     33683 156 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=18294.000000
s hg38.chr1_KI270714v1_random          12305 6 +     41717 CAGTGT--
s panTro4.chr1_GL389124_random         11591 6 +     50403 CAGTGT--
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365582 6 -    451211 caGTAT--
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647612 6 - 229942017 TAGTAT--
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163944 6 + 109391073 CAGTAT--
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20300 6 -     29987 CAGTAT--
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323563 6 + 227556264 CAGTAT--
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172558 6 - 220367699 cagtaT--
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393042 6 + 130588469 CAGTAT--
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562182 6 -  47448759 CAGTAT--
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     75745 6 -    347432 --CTATTT
i tupBel1.scaffold_123997.1-347432 I 278 I 201
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e saiBol1.JH378335                     33683 156 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=280333.000000
s hg38.chr1_KI270714v1_random          12311 78 +     41717 GCCACAAACTAATTGTAGAAATTCAAACTTATACGCAGCCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
s panTro4.chr1_GL389124_random         11597 78 +     50403 GCCACAAACTAATTGTAGAAATTCAAACTTATACTCAGCCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365588 78 -    451211 GCCAAAAACTAATTGTAGAAATTCAAGCTTATACTCAGCCTCATTTTGGGTAAGAATTCTCTTATTAACCTCCTGTCC
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647618 78 - 229942017 GTCAAAAACTAATTGTAGAAATTCAAACTTATACTCAGCCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57163950 77 + 109391073 GCCAAAAACTAATTGTAGAAATTCAAACTTATACTCAGCCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGT-C
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20306 78 -     29987 GCCAACAACTAATTGTAGAAATACAAACTTATACTCACTCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323569 78 + 227556264 GCCAACAACTAATTGTAGAAATACAAACTTATACTCACTCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172564 78 - 220367699 GCCAACAACTAATTGTAGAAATACAAACTTATACTCACTCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393048 78 + 130588469 GCCAACAACTAATTGTAGAAATTCAAACTTATACTCACTCTCATTTTGGGTAAGAGTTCTCCTATTAACCTCCTGTCC
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562188 74 -  47448759 GCCAAAAACTAATTATAGAAATTCAAACTTACACTTCACCCCATTTTGGGTAAGGGTTCTCCCGTTAACCTCCT----
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e saiBol1.JH378335                     33683 156 +    584576 I
e otoGar3.GL873592                   8069650 841 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=33157.000000
s hg38.chr1_KI270714v1_random          12389 13 +     41717 ---------------TCCTCTTC----------------CCCAC
s panTro4.chr1_GL389124_random         11675 13 +     50403 ---------------TCCTCTTC----------------CCCAC
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365666 13 -    451211 ---------------TCCTCTTC----------------CCCGC
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647696 13 - 229942017 ---------------TCCTCTTC----------------CCCAC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164027 13 + 109391073 ---------------TCCTCTTC----------------CCCAA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20384 13 -     29987 ---------------TCCTCTTC----------------CCTAC
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323647 13 + 227556264 ---------------TCCTCTTC----------------CCTAC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172642 13 - 220367699 ---------------TCCTCTTC----------------CCTAC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393126 13 + 130588469 ---------------TCCTTTTC----------------CCCAC
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562262  8 -  47448759 --------------------CTT----------------CCCAC
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8070491 44 -   9938236 TTTTCTGGTCCTGTGTCCCCTTCACAGAGACACCCTCTTTCCAC
i otoGar3.GL873592                 I 841 I 62
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e saiBol1.JH378335                     33683 156 +    584576 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=239885.000000
s hg38.chr1_KI270714v1_random          12402 60 +     41717 TACTTGTCAGGTGTGGAATTGGCCAACAGCACCCAAATGTGACAGCTGACTCCAGGGAGG
s panTro4.chr1_GL389124_random         11688 60 +     50403 TACTTGTCAGGTGTGGAATTGGCCAACAGCACCCAAATGTGACAGCTGACTCCAGGGAGG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365679 60 -    451211 TACTTGTCAGGTGTGGAACTGGCCAACAGAACCCAAATGTGACAGCTGACTCCAGGGAGG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647709 60 - 229942017 TACTTGTCAGGTGTGGAACTGGCCAACAGCACCCAAACGTGACAGCTGACTCCAGGGACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164040 60 + 109391073 TACTTGTCAGGTGTGGAATTGGCCAACAGCACCCAAATGTGACAGCTGACTCCAGGGAGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20397 60 -     29987 TACTTGTCAGGTGTAGAATTGGCCAACAGCACCCAAATGTGACAGCTGACTCCAGGGAGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323660 60 + 227556264 TACTTGTCAGGTGTAGAATTGGCCAACAGCACCCAAATGTGACAGCTGACTCCAGGGAGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172655 60 - 220367699 TACTTGTCAGGTGTAGAATTGGCCAACAGCACCTAAATGTGACAGCTGACTCCAGGGAGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393139 60 + 130588469 TACTTGTCAGGTGTGGAATTGGCCAACAGCACCCAAATGTGACAGTTGACTCCAGGGAGG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562270 60 -  47448759 TGCTTGTCAGGTGACGAATTGGCCAACAGCACCCAAACGTGACAGCTGACTCCAGGGAGG
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e saiBol1.JH378335                     33683 156 +    584576 I
e otoGar3.GL873592                   8070535 62 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=1000.000000
s hg38.chr1_KI270714v1_random          12462 1 +     41717 G
s panTro4.chr1_GL389124_random         11748 1 +     50403 G
i panTro4.chr1_GL389124_random     C 0 C 0
s calJac3.chr18                     46562330 1 -  47448759 G
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     33839 1 +    584576 G
i saiBol1.JH378335                 I 156 C 0
s otoGar3.GL873592                   8070597 1 -   9938236 G
i otoGar3.GL873592                 I 62 C 0
e panPan1.JH650218                    365739 0 -    451211 C
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 30728 299 -    433431 I
e rheMac3.chrUn_JH293294               20457 0 -     29987 C
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e macFas5.chr1                     106323720 0 + 227556264 C
e rhiRox1.KN295041v1                   32002 1086 +    640207 I
e chlSab2.chr20                     13393199 0 + 130588469 C
e papAnu2.chr1                      99172715 0 - 220367699 C
e nomLeu3.chr12                     57164100 0 + 109391073 C
e ponAbe2.chr1                     122647769 0 - 229942017 C

a score=2730.000000
s hg38.chr1_KI270714v1_random          12463 2 +     41717 AA
s panTro4.chr1_GL389124_random         11749 2 +     50403 AA
i panTro4.chr1_GL389124_random     C 0 C 0
s calJac3.chr18                     46562331 2 -  47448759 AA
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     33840 2 +    584576 AA
i saiBol1.JH378335                 C 0 I 159
s micMur1.scaffold_873                 31027 2 -    433431 AA
i micMur1.scaffold_873             I 299 C 0
s otoGar3.GL873592                   8070598 2 -   9938236 AA
i otoGar3.GL873592                 C 0 I 158
e panPan1.JH650218                    365739 0 -    451211 C
e nasLar1.chr1                      99119647 333 - 215897965 I
e rheMac3.chrUn_JH293294               20457 0 -     29987 C
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e macFas5.chr1                     106323720 0 + 227556264 C
e rhiRox1.KN295041v1                   32002 1086 +    640207 I
e chlSab2.chr20                     13393199 0 + 130588469 C
e papAnu2.chr1                      99172715 0 - 220367699 C
e nomLeu3.chr12                     57164100 0 + 109391073 C
e ponAbe2.chr1                     122647769 0 - 229942017 C

a score=5500.000000
s hg38.chr1_KI270714v1_random          12465 1 +     41717 G
s panTro4.chr1_GL389124_random         11751 1 +     50403 G
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365739 1 -    451211 G
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647769 1 - 229942017 G
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164100 1 + 109391073 G
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20457 1 -     29987 G
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323720 1 + 227556264 G
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172715 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393199 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562333 1 -  47448759 G
i calJac3.chr18                    C 0 C 0
s micMur1.scaffold_873                 31029 1 -    433431 G
i micMur1.scaffold_873             C 0 I 156
e nasLar1.chr1                      99119647 333 - 215897965 I
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e saiBol1.JH378335                     33842 159 +    584576 I
e otoGar3.GL873592                   8070600 158 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=3321.000000
s hg38.chr1_KI270714v1_random          12466 1 +     41717 G
s panTro4.chr1_GL389124_random         11752 1 +     50403 G
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365740 1 -    451211 G
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647770 1 - 229942017 G
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164101 1 + 109391073 G
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20458 1 -     29987 G
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323721 1 + 227556264 G
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172716 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393200 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562334 1 -  47448759 A
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 31030 156 -    433431 I
e tupBel1.scaffold_123997.1-347432     75751 201 -    347432 I
e saiBol1.JH378335                     33842 159 +    584576 I
e otoGar3.GL873592                   8070600 158 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=10862.000000
s hg38.chr1_KI270714v1_random          12467 3 +     41717 TGA
s panTro4.chr1_GL389124_random         11753 3 +     50403 TGA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365741 3 -    451211 TGA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647771 3 - 229942017 TGA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164102 3 + 109391073 TGA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20459 3 -     29987 TGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323722 3 + 227556264 TGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172717 3 - 220367699 TGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393201 3 + 130588469 TGA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562335 3 -  47448759 TGA
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     75952 3 -    347432 TGT
i tupBel1.scaffold_123997.1-347432 I 201 I 154
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 31030 156 -    433431 I
e saiBol1.JH378335                     33842 159 +    584576 I
e otoGar3.GL873592                   8070600 158 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=614528.000000
s hg38.chr1_KI270714v1_random          12470 153 +     41717 GCCCCACACCCTGTGCTCTTACCGGGACTGGTGGTTTCCTCCTGTTCAGCCTCATTCTTGCTTTGGCCACAAGTCTCGTGGCCCAGGTCCTGGAGGTCCACCTGGACCTGTTTACTGTCCTGCTTCAGCAAGGGTTCACCTGCGTGGGAAGAG
s panTro4.chr1_GL389124_random         11756 153 +     50403 GCCCCACACCCTGTGCTCTTACCGGGACTGGTGGTTTCCTCCTGTTCAGCCTCATTCTTGCTTTGGCCACAAGTCTCGTAGCCCAGGTCCTGGAGGTCCACCTGGACCTGTTTACTGTCCTGCTTCAGCAAGGGTTCACCTGCGTGGGAAGAG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365744 153 -    451211 GCCCCACATCCTGTGCTCTTACCAGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTTGCTTCAGCCACAAGTCTCATAGCCCAGGTACTGGATGTCCACATGGACCTGCTTGCTGTCCTGCTTCACCAAGGATTCACCTGCTTGGGAAGAG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647774 153 - 229942017 GCCCCACACCCTGTGCTCTTACCAGGACTGGTGGTTTCCTCCTGTTCAGCCTCATTCTCGCTTCAGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACCAAAGATTCACCTGCTTGGGAAGAG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164105 153 + 109391073 GCCCCACACCCTGTGCTCTTACCAGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTCGCTTCGGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACCAAGGATTCACCTGCTTGGGAAGAG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20462 153 -     29987 GCCCCACACCCTGTGCTCTTACCGGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTCACTTCGGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACTAAGGATTCACCTGCTTGGGAAGAG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323725 153 + 227556264 GCCCCACACCCTGTGCTCTTACCGGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTCACTTCGGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACTAAGGATTCACCTGCTTGGGAAGAG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172720 153 - 220367699 GCCCCACACCCTGTGCTCTTACCGGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTCACTTCGGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACTAAGGATTCACCTGCTTGGGAAGAG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393204 153 + 130588469 GCCCCACACCCTATGCTCTTACCGGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTCGCTTCGGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACCAAGGATTCACCTGCTTGGGAAGAG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562338 153 -  47448759 ATTCCACACCCTGTGCTCTTACCGGGACTGGTGGTTTCCTCCCGTTCAGCCTCATTCTCGCTTCGGCCACAAGTCTCATAGCCCAGGTCCTGGAGGTCCACCTGGACCTGCTTGCTGTCCTGCTTCACCAAGGATTCACCTGCTTGGGCAGAG
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 31030 156 -    433431 I
e tupBel1.scaffold_123997.1-347432     75955 154 -    347432 I
e saiBol1.JH378335                     33842 159 +    584576 I
e otoGar3.GL873592                   8070600 158 -   9938236 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=5005.000000
s hg38.chr1_KI270714v1_random          12623 1 +     41717 A
s panTro4.chr1_GL389124_random         11909 1 +     50403 A
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365897 1 -    451211 A
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647927 1 - 229942017 A
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164258 1 + 109391073 A
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20615 1 -     29987 A
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323878 1 + 227556264 A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172873 1 - 220367699 A
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393357 1 + 130588469 A
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562491 1 -  47448759 A
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8070758 1 -   9938236 A
i otoGar3.GL873592                 I 158 I 185
e nasLar1.chr1                      99119647 333 - 215897965 I
e micMur1.scaffold_873                 31030 156 -    433431 I
e tupBel1.scaffold_123997.1-347432     75955 154 -    347432 I
e saiBol1.JH378335                     33842 159 +    584576 I
e rhiRox1.KN295041v1                   32002 1086 +    640207 I

a score=9100.000000
s hg38.chr1_KI270714v1_random          12624 1 +     41717 C
s panTro4.chr1_GL389124_random         11910 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365898 1 -    451211 C
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647928 1 - 229942017 C
i ponAbe2.chr1                     C 0 C 0
s rheMac3.chrUn_JH293294               20616 1 -     29987 C
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323879 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172874 1 - 220367699 C
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393358 1 + 130588469 C
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99119980 1 - 215897965 C
i nasLar1.chr1                     I 333 I 188
s rhiRox1.KN295041v1                   33088 1 +    640207 C
i rhiRox1.KN295041v1               I 1086 I 188
s calJac3.chr18                     46562492 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     34001 1 +    584576 C
i saiBol1.JH378335                 I 159 I 187
s micMur1.scaffold_873                 31186 1 -    433431 C
i micMur1.scaffold_873             I 156 I 337
s tupBel1.scaffold_123997.1-347432     76109 1 -    347432 C
i tupBel1.scaffold_123997.1-347432 I 154 I 186
e otoGar3.GL873592                   8070759 185 -   9938236 I
e nomLeu3.chr12                     57164259 0 + 109391073 C

a score=715044.000000
s hg38.chr1_KI270714v1_random          12625 188 +     41717 AGCAGGTGTTACAGAATGTCTGAATTTCCCACATATGCCCTCAGCCTCAATGGCACATACCCTAACCTTGTGGGGCAGGGAGGGCAGATCCACAGTACGAGAGAAGCTTCTTTGAACTGGTGGGAGAAGAGACCACCAGCTCCAGGAAGCAGAATTTCTTTCCA-CAGGAGGAGCCTGCATTTGCCATT
s panTro4.chr1_GL389124_random         11911 188 +     50403 AGCAGGTGTTACAAAATGTCTGAATTTCCCACATATGCCCTGAGCCTCAATGGCACATACCCTAACCTTGTGGGGCAGGGAGGGCAGATCCACAGTGCGAGAGAAGCTTCTTTGAACTGGTGGGAGAAGAGACCACCAGCTCTAGGAAGCAGAATTTCTTTCCA-CAGGAGGAGCCTGCATTTGCCATT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    365899 188 -    451211 AGCAGGTGTTAGAGAATGTCTGAATTTCCCACATATGCCCTCAGCCTCAATGGCACATACCCTAACCTTTTGGGGCAGGGAGGGCAGATCCACAGTGGGAGAGAAGCTTCTCTGAACTGGTGGGAGAAGGGACCACCAGCTCCAGGAAGCAGAATTTCTTTCCA-CAGGAGGAGCCTCCATTTGGCATT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122647929 188 - 229942017 AGCAGGTGTTAGACAATGTCTGAATTTCCCACATATGCTCTCAGCCTCAATGGCACATACCCCAACCTTTTGGGGCAGGGAGGGCAGATCCACAGTGGGAGAGAAGCTTCTCTGAACTGGTGGGAGAAGAGACCACCAGCTCCAGGAAGCAGAATTTCTTTCCA-CAGGAGGAACCTGCATTTGCCATT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164259 188 + 109391073 AGCAGTTGTTACAGAATGTCTGAATTTCCCACATATGCCCTCAGCCTCAATGGCACATACCCTAACCTTTTGGGGTACGGAGGGCAGATCCACAGTGGGAGAGAAGCTTCTCTGAACTGGTGGGAGAAGAGACCACTAGCTCCAGGAAGCAGAATTGCTTTCCA-CAGGAGGAGCCTGCATTTGCCATT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20617 188 -     29987 AGCAGGTGTTACAGAATGTCTGAATTTCCCACATATGCCCTCAGCCTCAATGGCACATACCCTAACCTTTTGGGGCAGGGAGGTCAGATCCACAGTGGGAGAGAAGCTTCTTTCAACTGGTGGGAGAAGAGACCACCAGCTCCAAGAAGCAGAATTTCTTTCAA-CAGGATGAGCCTGCATTTGCCATT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106323880 188 + 227556264 AGCAGGTGTTACAGAATGTCTGAATTTCCCACATATGCCCTCAGCCTCAGTGCCACATACCCTAACCTTTTGGGGCAGGGAGGTCATATCCACAGTGGGAGAGAAGCTTCTTTGAACTGGTGGGAGAAGAGACCACCAGCTCCAAGAAGCAGAATTTCTTTCAA-CAGGATGAGCCTGCATTTGCCATT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99172875 187 - 220367699 AGCAGGTGTTACAGAATGTCTGAATTTCCCACATATG-CCTCAGCCTCAGTGGCACATACCCTAACCTTTTGGGGCAGGGAGGTCATATCCACAGTGGGAGAGAAGCTTCTTTGAACTGGTGGGAGAAGAGACCACCAGCTCCAGGAAGCAGAATTTCTTTCCA-TAGGATGAGCCTGCATTTGCCATT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393359 188 + 130588469 AGCAGGTGTTACAGAATGTCTGAATTTCCCACATATGCCCTCAGCCTCAGTGGCACATACCCTAACCTTTTGGGGCAGGGAGGTCAGATCCACAGTGGGAGAGAAGCTTCTTTGAACTGGTGGGAGAAGAGACCACCAGCTCCAGGAAGCAGAATTTCTTTCTA-TAGGATAAGCCTGCATTTGCCATT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562493 189 -  47448759 AGCAGGTGTTGCAGAATGTCTGAATTTCTCACATCTACCCTCAGCCGCGATGGCACATACCCTAACCTTCTGGGGCAGGGAGGTCAGATCCGCAGTGGTAGAGAAGCTTCTTTGAACCAGTGGGAGAAGAGACCACCAGCTCCAGGAAGCAGAATTTCTTTCCACCAGGATAAGCCTGCATTTGCCATG
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99119981 188 - 215897965 I
e micMur1.scaffold_873                 31187 337 -    433431 I
e tupBel1.scaffold_123997.1-347432     76110 186 -    347432 I
e saiBol1.JH378335                     34002 187 +    584576 I
e otoGar3.GL873592                   8070759 185 -   9938236 I
e rhiRox1.KN295041v1                   33089 188 +    640207 I

a score=14345.000000
s hg38.chr1_KI270714v1_random          12813 4 +     41717 GATA
s panTro4.chr1_GL389124_random         12099 4 +     50403 GATA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366087 4 -    451211 GATA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648117 4 - 229942017 GATT
i ponAbe2.chr1                     C 0 C 0
s rheMac3.chrUn_JH293294               20805 4 -     29987 GACA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324068 4 + 227556264 GACA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173062 4 - 220367699 GACA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393547 4 + 130588469 GACA
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99120169 4 - 215897965 GACA
i nasLar1.chr1                     I 188 I 125
s rhiRox1.KN295041v1                   33277 4 +    640207 GACA
i rhiRox1.KN295041v1               I 188 I 125
s calJac3.chr18                     46562682 4 -  47448759 GATA
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     34189 4 +    584576 GATA
i saiBol1.JH378335                 I 187 I 160
s otoGar3.GL873592                   8070944 2 -   9938236 GG--
i otoGar3.GL873592                 I 185 I 184
s tupBel1.scaffold_123997.1-347432     76296 4 -    347432 GACC
i tupBel1.scaffold_123997.1-347432 I 186 I 153
e micMur1.scaffold_873                 31187 337 -    433431 I
e nomLeu3.chr12                     57164447 0 + 109391073 C

a score=450036.000000
s hg38.chr1_KI270714v1_random          12817 162 +     41717 ATCTCCCCTTCAGATAACCTAGGCCTTAGTTGGGACAAGGT-ATCTGTaagtcagggattgtgtactctcatctctagcagccccattgaagctggcaagtgctttatcagcaggggttcaataaatgttgaatggagctgaactaatTTAGAGTCCCAAGAC
s panTro4.chr1_GL389124_random         12103 162 +     50403 ATCTCCCCTTCAGATAACCTAGGCCTTAGTTGGGACAAGGT-ATCTGTAAGTCAGGGATTGTGTACTCTCATCTCTAGCAGCCCCATTGACGCTGGCGAGTGCTTTATCAGCAAGGGTTCAATAAATGTTGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366091 163 -    451211 ATCTCCCCTTCTGATAACCCAGGCTTTAGTTGGGACCAGATAATCTGTAAGTCAGGGATTGTACACTATCATCTCCAGCAGCCCCATTGAAGCTGGCAAGTGCTTTATCTGCAGgggttcaataaatgttgaatggaGCTAAACTAATTTAGAGTCCCAAGAC
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648121 162 - 229942017 ATCTCCCCTTCAGATAACCCAGGCTTTAGTTGGGACCAGAT-ATCCTTAAGTCAGGGATTGTACACTACCATCTCTAGCAGCCCCATTGAAGCTGGCAAGTGCTTTATCCGCAGGGGTTCAATAAATGTTGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164447 162 + 109391073 ATCTCCCCTTCAGATAACCCTGGCTTTAGTTGGGACCAGAT-ATCTGTAAGTCAGGGATTGTACACTATCATCTCTAGCAGCCCCACTGAAGCTGGCAAGTGCTTTATCCGCAGGGGTTCAATCAATGTTGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20809 124 -     29987 ATCTCTCCT--------------------------------------TAAGTCAGGGATTGTATACTATCATCTCTAGCAGCCACATTGAAGCTGGCAAGTGCTTTATCCA-CGGGGTTCAATAAATGTGGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324072 124 + 227556264 ATCTCTCCT--------------------------------------TAAGTCAGGGATTGTATACTATCATCTCTAGCAGCCACATTGAAGCTGGCAAGTGCTTTATCCA-CGGGGTTCAATAAATGTGGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173066 125 - 220367699 ATCTCTCCT--------------------------------------TAAGTCAGGGATTCTATACTATCATCTCTAGCAGCCACATTGAAGCTGGCAAGTGCTTTATCCACCGGGGTTCAATAAATGTGGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393551 125 + 130588469 ATCTCCCCT--------------------------------------TAAGTCAGGGATTATATACTATCATCTGTAGCAGCCACATTGAAGCTGGCAAGTGCTTTATCCACAGGGGTTCAATAAATGTGGAATGGAGCTGAACTAATTTAGAGTCCCAAGAC
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562686 161 -  47448759 ATCTCCCCTTCAGATAACCTAGGC-TTAGTTGCGACCAGAT-ATCTGTAGGTTGGGGATTATATACTATCATCTCTAGAGGCCCCATGGAAGCTGCCAAGTGCTATATCCGCAGGGGTTCGGTAAATACTGAATGGAGCTAAACTAATGTAGAGTCCCAAGAC
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120173 125 - 215897965 I
e micMur1.scaffold_873                 31187 337 -    433431 I
e tupBel1.scaffold_123997.1-347432     76300 153 -    347432 I
e saiBol1.JH378335                     34193 160 +    584576 I
e otoGar3.GL873592                   8070946 184 -   9938236 I
e rhiRox1.KN295041v1                   33281 125 +    640207 I

a score=7098.000000
s hg38.chr1_KI270714v1_random          12979 1 +     41717 A
s panTro4.chr1_GL389124_random         12265 1 +     50403 A
i panTro4.chr1_GL389124_random     C 0 C 0
s rheMac3.chrUn_JH293294               20933 1 -     29987 A
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324196 1 + 227556264 A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173191 1 - 220367699 A
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393676 1 + 130588469 A
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99120298 1 - 215897965 A
i nasLar1.chr1                     I 125 I 665
s rhiRox1.KN295041v1                   33406 1 +    640207 A
i rhiRox1.KN295041v1               I 125 I 665
s calJac3.chr18                     46562847 1 -  47448759 A
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     34353 1 +    584576 A
i saiBol1.JH378335                 I 160 I 127
s micMur1.scaffold_873                 31524 1 -    433431 A
i micMur1.scaffold_873             I 337 I 124
s otoGar3.GL873592                   8071130 1 -   9938236 A
i otoGar3.GL873592                 I 184 I 97
s tupBel1.scaffold_123997.1-347432     76453 1 -    347432 A
i tupBel1.scaffold_123997.1-347432 I 153 I 33
e panPan1.JH650218                    366254 0 -    451211 C
e nomLeu3.chr12                     57164609 0 + 109391073 C
e ponAbe2.chr1                     122648283 0 - 229942017 C

a score=117102.000000
s hg38.chr1_KI270714v1_random          12980 32 +     41717 CCTAGACctgcactgtccaataaggtagttag
s panTro4.chr1_GL389124_random         12266 32 +     50403 CCTAGACctgtactgtccaataaggtagttag
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366254 32 -    451211 CCTAGACCTATACTGTCCAATAAGGTACTTAG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648283 32 - 229942017 Cctagacttgtactgtccaataaggtagttag
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164609 32 + 109391073 CCTAGACctgtactgtccaataaggtagttag
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20934 32 -     29987 Cctagacctgtactgtccaataagagagttag
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324197 32 + 227556264 CCTAGACTtgtactgtccaataagagagttag
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173192 32 - 220367699 CCTAGACCTGTACTGTCCAATAAGAGAGTTAG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393677 32 + 130588469 CCTAGACctgtactgtccaataagagagttag
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562848 32 -  47448759 CCCAGACctgtactgtccaataagggagtgac
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e micMur1.scaffold_873                 31525 124 -    433431 I
e tupBel1.scaffold_123997.1-347432     76454 33 -    347432 I
e saiBol1.JH378335                     34354 127 +    584576 I
e otoGar3.GL873592                   8071131 97 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=5005.000000
s hg38.chr1_KI270714v1_random          13012 1 +     41717 t
s panTro4.chr1_GL389124_random         12298 1 +     50403 t
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366286 1 -    451211 T
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648315 1 - 229942017 t
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164641 1 + 109391073 t
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20966 1 -     29987 t
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324229 1 + 227556264 t
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173224 1 - 220367699 T
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393709 1 + 130588469 t
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562880 1 -  47448759 t
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     76487 1 -    347432 t
i tupBel1.scaffold_123997.1-347432 I 33 I 962
e nasLar1.chr1                      99120299 665 - 215897965 I
e micMur1.scaffold_873                 31525 124 -    433431 I
e saiBol1.JH378335                     34354 127 +    584576 I
e otoGar3.GL873592                   8071131 97 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=194694.000000
s hg38.chr1_KI270714v1_random          13013 51 +     41717 agccacatatggccactttatactaaattaactaaaattaaataaaaccaa
s panTro4.chr1_GL389124_random         12299 51 +     50403 agccacatatggccagtttatactaaattaactaaaattaaataaaaccaa
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366287 51 -    451211 AGCCACATAGGGCCACtttatattaaattaactaaaattaaataaaaccaa
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648316 51 - 229942017 agccacatatggccactttatactacattaactaaaattaaataaaaccaa
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164642 51 + 109391073 agccacatatggccattttatactacattaactaaaattaaataaaaccaa
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               20967 51 -     29987 agccacatatggccactttatactaaattaactaaaattaaataaaaccaa
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324230 51 + 227556264 agccacatatggccactttatactaaattaactaaaattaaataaaaccaa
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173225 51 - 220367699 AGCCACATATGGCCACTTTAtactaaattaactaaaattaaataaaaccaa
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393710 51 + 130588469 agccacatatggccactttatactaaattaactaaaattaaataaaaccaa
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562881 51 -  47448759 agcctcatacgaccactttatacgaaattgactaaaattaaacaaaacaaa
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e micMur1.scaffold_873                 31525 124 -    433431 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34354 127 +    584576 I
e otoGar3.GL873592                   8071131 97 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=7960.000000
s hg38.chr1_KI270714v1_random          13064 2 +     41717 at
s panTro4.chr1_GL389124_random         12350 2 +     50403 at
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366338 2 -    451211 at
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648367 2 - 229942017 at
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164693 2 + 109391073 at
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21018 2 -     29987 at
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324281 2 + 227556264 at
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173276 2 - 220367699 at
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393761 2 + 130588469 ag
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562932 2 -  47448759 at
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8071228 2 -   9938236 at
i otoGar3.GL873592                 I 97 I 38
e nasLar1.chr1                      99120299 665 - 215897965 I
e micMur1.scaffold_873                 31525 124 -    433431 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34354 127 +    584576 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=111276.000000
s hg38.chr1_KI270714v1_random          13066 27 +     41717 gtccaagttgcactagccacacttcat
s panTro4.chr1_GL389124_random         12352 27 +     50403 gtccaagttgcaccagccacacttcat
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366340 27 -    451211 gtcCAAGTTGCACTAGCCACACTTCAT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648369 27 - 229942017 gtccaagttgcactagccacacttcat
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164695 27 + 109391073 gtccaagttgcactagccacacttcat
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21020 27 -     29987 gttcaagttgcactagccacacttcat
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324283 27 + 227556264 gtccaagttgcactagccacacttcat
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173278 27 - 220367699 gtCCAAGTTGCACTAGCCACACTTCAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393763 27 + 130588469 gtccaagttgcactaaccacacttcat
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562934 27 -  47448759 gtccaagttgcactagccacacttcac
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e micMur1.scaffold_873                 31525 124 -    433431 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34354 127 +    584576 I
e otoGar3.GL873592                   8071230 38 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=59901.000000
s hg38.chr1_KI270714v1_random          13093 15 +     41717 gtgctcaat----aaccac
s panTro4.chr1_GL389124_random         12379 15 +     50403 gtgctcaat----aaccac
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366367 15 -    451211 GTGCTCAAT----AACCAC
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648396 15 - 229942017 gtgctcaat----aaccac
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164722 15 + 109391073 gtgctcaaa----aactac
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21047 15 -     29987 gtgctcaat----aaccac
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324310 15 + 227556264 gtgctcaat----aaccac
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173305 15 - 220367699 GTGCTCAAT----AACCAC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393790 15 + 130588469 gtgctcaat----aaccac
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562961 15 -  47448759 gtgctccat----agccac
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8071268 19 -   9938236 gtgctgAGTCTAGACCCAT
i otoGar3.GL873592                 I 38 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e micMur1.scaffold_873                 31525 124 -    433431 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34354 127 +    584576 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=2470.000000
s hg38.chr1_KI270714v1_random          13108 1 +     41717 a
s panTro4.chr1_GL389124_random         12394 1 +     50403 g
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366382 1 -    451211 G
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648411 1 - 229942017 a
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164737 1 + 109391073 g
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21062 1 -     29987 g
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324325 1 + 227556264 g
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173320 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393805 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562976 1 -  47448759 g
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     34481 1 +    584576 a
i saiBol1.JH378335                 I 127 I 536
s micMur1.scaffold_873                 31649 1 -    433431 a
i micMur1.scaffold_873             I 124 N 0
s otoGar3.GL873592                   8071287 1 -   9938236 A
i otoGar3.GL873592                 C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=194899.000000
s hg38.chr1_KI270714v1_random          13109  69 +     41717 -----------------tTATGTCTGTATAGAACA------------------------------------------------------TACAGAGCTTATAAGACGTACAGGCTAG-------TTCTTT-------ACTAGTAAGTCATAGTT
s panTro4.chr1_GL389124_random         12395  69 +     50403 -----------------tTATGTCTGTATAGAACA------------------------------------------------------TACAGAGCTTATAAGACGTACAGGCTAG-------TTATTT-------ACTAGTAAGTCATAGTT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366383  69 -    451211 -----------------TTATGTCTGTATAGAACA------------------------------------------------------TACAGAACTTATAAGACACACAGGCTAG-------TTCTTT-------ACTAGTAAGTCATAGTT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648412  71 - 229942017 -----------------tTATGTAGGTATGGAACA------------------------------------------------------TACAGAACTTATAAGACACACAGGCTAG-----TTTTCTTT-------ACTAGTAAGTCATAGTT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164738  71 + 109391073 -----------------tTATGTCGGTATAGAACA------------------------------------------------------TACAGAACTTATAAGACACACAGGCTAG-----TTTTCTTT-------ACTAGTAAGTCCTAGTT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21063  70 -     29987 -----------------tTATGTCGGTATAGAACA------------------------------------------------------CACAGAAGTTATAAGATACACAGGCTAC------TTACTTT-------ACTAGTAAGTCACAGTT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324326  70 + 227556264 -----------------tTATGTTGGTATAGAACA------------------------------------------------------CACAGAAGTTATAAGATACACAGGCTAC------TTACTTT-------ACTAGTAAGTCACAGTT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173321  70 - 220367699 -----------------TTATATTGGtatagaaca------------------------------------------------------cagagaagttataAGATACACAGGCTAC------TTACTTT-------ACTAGTAAGTCACAGTT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393806  70 + 130588469 -----------------TTATGTCGGTATAGAATG------------------------------------------------------CACAGAAGTTATAAGATACACAGGCTAC------TTACTTT-------ACTAGTAAGTCACAGTT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46562977  69 -  47448759 -----------------ttaggtaggtatagaaca------------------------------------------------------cacagaacttataaga--caCAGGCCAG-----TTTTCTTT-------ACTAGTAAGTCACAGTT
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8071288 154 -   9938236 AGATGCTTCTGAAGAATCTAATACTGTGCAGAGAAGCAGAAGAGGGACACCTGGCCTATGTGGAGAGACTAAGGCGGTTTATTGGCCGCTGCAGAACTCAGCAAACCTGGAGGGGAGCCGTTCTTCCCTTCACTCTCACTGCAAACTTACAACT
i otoGar3.GL873592                 C 0 I 522
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34482 536 +    584576 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=1120828.000000
s hg38.chr1_KI270714v1_random          13178 294 +     41717 ACCTACTAAGTATAACTCTCTATTTCTCCAGCTCGTTCGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCGGGTGCTGGGTGGACCCTGGTGGGCTAAATGCTGATTG-GGCCCAGTGTCACAAGGCTGGGACTGGTTCTCCAACTGTGAAAGGGGCCAAGACAAGGATCAGGACAGTCCGAGGCCACCCCCATGCAGTGATGACCATGGCCCGTTGTGAACCCCGTGGA-CTTTACTCAA
s panTro4.chr1_GL389124_random         12464 294 +     50403 ACCTACTAAGTATAACTCTGTATTTCTCCAGCTCGTTCGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTGGTGGGCTAAACGCTGATTG-GGCCCAGTGTCACGAGGCTGGGACTGGTTCTCCAACTGCGAAAGGGGCCAAGACAAGGATCAGGACAGTCCGAGGCCACCCCCATGCAGTGATGACCAAGGCCCGTTGTGAACCCCGTGGA-CTTTACTCAA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366452 283 -    451211 ACTTACTAAGTATAACTCTGTATTTCTCCAGCTCATTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAACAGCTTCTCCTGGAGATCTTGATAGCATTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTGGTAGGCTAAACGCTGACTGAGGCCCAGGGTCATGAGGCTGGGACCGGTTATCCAACTGTGAAAG------------GGATCAGGACAGTCTGAGGTCAACCCCATGCAGTGATGAACACTGCCCCTTCTGAACCCTGTGTA-CTTTACTCAA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648483 295 - 229942017 ACTTACTAAGTATAATTCTGTATTTCTCCACCTCGTTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTATGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTGGTAGGCTAAACGCTGACTGAGGCCCAGGGTCATGAGGCTGGGACTGGTTATCCAACTGTGAAAGGGGCCAATACAGGGATCAGGACAGTCTGAGGTCACCCCCATGCAGTGATGACCACCGCCCCTTCTGAACCCTGTGGA-CTTTACTCAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57164809 295 + 109391073 ACTTACCAAGCATAACTCTGTATTTCTCCAGCTCGTTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTGGTAGGCTAAACGCTGACTGAGGCCCAGGGTCACGAGGCTGGGACTGGTTATCCAACTGTGAAAGGGGCCAATACAGGGATCAGGACAGTCTGAGGTCACCCCCATGCAGTGACAACCACCGCCCCTTCTGAATCCTGTGGA-CTTTACTCAA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21133 294 -     29987 ACTTACTAAGTATAACTCTGTATTTCTCCAGCTCATTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTAGTAGGCTAAACGCTGACTGAGGCCCAGGGTCACGAGGCTGGGACTGGTTATCCAACTGTGAAAGGGTCCAATACAGGGATCAGGACAGTCTGAGGTCA-CCCCATGCAATGACGACCACCGCCCCTTCTGAACCCTGTGGA-TTTTACTCAA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324396 294 + 227556264 ACTTACTAAGTATAACTCTGTATTTCTCCAGCTCATTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGAGTGGACCCTGGTAGGCTAAATGCTGACTGAGGCCCAGGGTCACGAGGCTGGGACTGGTTATCCAACTGTGAAAGGGTCCAATACAGGGATCAGGACAGTCTGAGGTCA-CCCCATGCAATGACGACCACCGCCCCTTCTGAACCCTGTGGA-TTTTACTCAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173391 295 - 220367699 ACTTACTAAGTATAACTCTGTATTTCTCCAGCTCATTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGAGTGGACCCTGGTAGGCTAAATGCTGACTGAGGCCCAGGGTCACGAGGCTGAGACTGGTTATCCAACTGTGAAAGGGTCCAATACAGGGATCAGGACAGTCTGAGGTCACCCCCATGCAATGACGACCACCGCCCCTTCTGAACCCTGTGGA-CTTTACTCAA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13393876 295 + 130588469 ACTTACTAAGTATAACTCTGTATTTCTCCAGCTCATTAGCCTGAGCAAAGACAGTGGCTTCTGATAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTGGTAGGCTAAATTCTGACTGAGGCCCAGGGTCACGAGGCTGGGACTGGTTATCCAACTGTGAAAGGGTCCAATACAGGGATCAGGACAGTCTGAGGTCACCCCCATGCAATGACGACCACCGCCCCTTCTGAACCCTGTGGA-CTTTACTCAA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563046 296 -  47448759 ACTTACTGAGTATGACTCTGTATTTCTCCAGCTCATTAGCCTGAGCAAGGACAGTGGCTTCTGAGAGCAGCAGCTTCTCCTGGAGATCTTGATAGCGTTGTTTGCATTGTGACAGCTGGGAGCGCAGGTGCTGGGTGGACCCTGGCAGGCTAAACATTGACTGAGGCCGAGGGTCATGAGGTTGGGACTGGTTATCCAACTGTGAAAGGGGCCAGTACAGGGATCAGGACAGCCTGAGGTCACCCCCATGCAGTGACAACCACTACCCCTTCTGAACCTTGTGGATTTTTACTCAT
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34482 536 +    584576 I
e otoGar3.GL873592                   8071442 522 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=10505.000000
s hg38.chr1_KI270714v1_random          13472 2 +     41717 GT
s panTro4.chr1_GL389124_random         12758 2 +     50403 GT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366735 2 -    451211 GT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648778 2 - 229942017 GT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165104 2 + 109391073 GT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21427 2 -     29987 GT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324690 2 + 227556264 GT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173686 2 - 220367699 GT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394171 2 + 130588469 GT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563342 2 -  47448759 GT
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8071964 2 -   9938236 GT
i otoGar3.GL873592                 I 522 I 45
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34482 536 +    584576 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=239084.000000
s hg38.chr1_KI270714v1_random          13474 59 +     41717 CTGTCACAGCACTTCTCATGCCTTTTGGCAGTGACTTGCTTTCCGGATGgagctcctgg
s panTro4.chr1_GL389124_random         12760 59 +     50403 CTGTCACAGCACTTCTCATGCCATTTGGCAGTGACTTGCTTTCCAGATGgagctcctgg
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366737 59 -    451211 CTGTCACAGCACTTCTCATGCCATTTGGCAGTGACTTGCTTTCCAGATGGAGCTCCTGG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648780 59 - 229942017 CTGTCACAGCACTTCTCATGCCATTTGGCAGTGACTTGCTTTCCAGATGgagctcctgg
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165106 59 + 109391073 CTGTCACAGCACTTCTCATGCCATTTGGCAGTGACTTCCTTTCCTGATGgagcccctgg
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21429 59 -     29987 CTGTCACAGCACTTGTCATGCCATTTGGCAGTGACTTGCTTTCCAGATGgagctcctgg
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324692 59 + 227556264 CTGTCACAGCACTTCTCATGCCATTTGGCAGTGACTTGCTTTCCAGATGgagctcctgg
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173688 59 - 220367699 CTGTCACAGCACTTCTCATGCCATTTGGCAGGGACTTGCTTTCCAGATGGAGCTCCTGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394173 59 + 130588469 CTGTCACAGCACTTCTCATGCCATTTGGCAGTGACTTGCTTTCCAGATGGAGCTCCCGG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563344 59 -  47448759 CTGTCACAGCACTTCTCATGCCATTTGGCAGCAACTTGCTTTCCAGATGgagctcctgg
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34482 536 +    584576 I
e otoGar3.GL873592                   8071966 45 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=5005.000000
s hg38.chr1_KI270714v1_random          13533 1 +     41717 a
s panTro4.chr1_GL389124_random         12819 1 +     50403 a
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366796 1 -    451211 A
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648839 1 - 229942017 a
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165165 1 + 109391073 a
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21488 1 -     29987 a
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324751 1 + 227556264 a
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173747 1 - 220367699 A
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394232 1 + 130588469 A
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563403 1 -  47448759 a
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8072011 1 -   9938236 a
i otoGar3.GL873592                 I 45 I 113
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34482 536 +    584576 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=379737.000000
s hg38.chr1_KI270714v1_random          13534 109 +     41717 gtgctgggataatgttttcctcatatctgtatc-------cacagcacacagcacagcgccaatcaagtctacagaggagctcttaggaaacgttttctcagtgGTCAACAAGAGA
s panTro4.chr1_GL389124_random         12820 109 +     50403 gtgctgggataatgttttcttcatatctgtatc-------cacagcacacagcacaGCGCCAATCAAGTCTACAGAGGAGCTTTTAGGCAACGTTTTCTCAGTGGTCAAAAAGAGA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366797 109 -    451211 GCACTGggataatattttcttcatgtctGTATC-------CACAGCACACAGCACAGCACCAATCAAGTCTACAGAGGATCTCTCAGGAAATGTTTTCTCAGTGGTCAAAAAGAGA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648840 116 - 229942017 gtgctgggataatgtttgcttcatatctgtatccacagcacacagcacacagcacagcgccaatcaaGTCTACAGAGGAGCTCTCAGGAAATGTTTTCTCAGTGGTCAAAAAGACA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165166 108 + 109391073 gcgctgggataatgttttcttcatatctgtatc-------cacagcacacagcacagcgccaatcatgtctacagaggagct-tcaggaaatgtttTCTCAGTGGTCAAAAAGAGA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21489 109 -     29987 gcactgggataatgttttcttcatatcagtatc-------cacagcacacagcacagcgccaatcaagtctacagaggagctctcaggaaatgtttTCTCAGTGGTACAAAAGAGA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324752 109 + 227556264 gcactgggataatgttttcttcatatcagtatc-------cacagcacacagcacaGCGCCAATCAAGTCTACAGAGGAGCTCTCAGGAAATGTTTTCTCAGTGGTACAAAAGAGA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173748 109 - 220367699 GCACTGGGATAATGTTTTCTTCATATCAGTATC-------CACGGCACACAGCACAGCGCCAATCAAGTCTACAGAGGAGCTCTCAGGAAATGTTTTCTCAGTGGTACAAAAGAGA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394233 106 + 130588469 GCACTGCGGTAACTttttcttcatatcagtatc-------cacagcacacagcacagcgccaatcaagtctacagaggagctctcaggaaatgtttTCTCAGTGGTACAAAAG---
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563404 108 -  47448759 gtgctgggataa-gtataattcatctctgtatc-------tacagcacacagcacagcgccaatcaagtgtacagaggagctctcggaaaatgtcttttcagtgGTCAAAAAGAGA
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120299 665 - 215897965 I
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e saiBol1.JH378335                     34482 536 +    584576 I
e otoGar3.GL873592                   8072012 113 -   9938236 I
e rhiRox1.KN295041v1                   33407 665 +    640207 I

a score=7098.000000
s hg38.chr1_KI270714v1_random          13643 1 +     41717 A
s panTro4.chr1_GL389124_random         12929 1 +     50403 A
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366906 1 -    451211 A
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648956 1 - 229942017 A
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165274 1 + 109391073 A
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21598 1 -     29987 A
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324861 1 + 227556264 A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173857 1 - 220367699 A
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394339 1 + 130588469 A
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99120964 1 - 215897965 A
i nasLar1.chr1                     I 665 C 0
s rhiRox1.KN295041v1                   34072 1 +    640207 A
i rhiRox1.KN295041v1               I 665 C 0
s calJac3.chr18                     46563512 1 -  47448759 A
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     35018 1 +    584576 A
i saiBol1.JH378335                 I 536 C 0
e tupBel1.scaffold_123997.1-347432     76488 962 -    347432 I
e otoGar3.GL873592                   8072012 113 -   9938236 I

a score=22672.000000
s hg38.chr1_KI270714v1_random          13644 3 +     41717 GGG
s panTro4.chr1_GL389124_random         12930 3 +     50403 GGG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366907 3 -    451211 GGG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648957 3 - 229942017 GGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165275 3 + 109391073 GGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21599 3 -     29987 GGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324862 3 + 227556264 GGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173858 3 - 220367699 GGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394340 3 + 130588469 GGA
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99120965 3 - 215897965 GGG
i nasLar1.chr1                     C 0 C 0
s rhiRox1.KN295041v1                   34073 3 +    640207 GGG
i rhiRox1.KN295041v1               C 0 C 0
s calJac3.chr18                     46563513 3 -  47448759 GGG
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     35019 3 +    584576 GGG
i saiBol1.JH378335                 C 0 C 0
s tupBel1.scaffold_123997.1-347432     77450 3 -    347432 GCG
i tupBel1.scaffold_123997.1-347432 I 962 C 0
e otoGar3.GL873592                   8072012 113 -   9938236 I

a score=79126.000000
s hg38.chr1_KI270714v1_random          13647 10 +     41717 GTGGAACCCT
s panTro4.chr1_GL389124_random         12933 10 +     50403 GTGGAACCCT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366910 10 -    451211 GTGGAACCCT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648960 10 - 229942017 GTGGAACCCT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165278 10 + 109391073 GTGGAACCCT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21602 10 -     29987 GTGTAACCCT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324865 10 + 227556264 GTGTAACCCT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173861 10 - 220367699 GTGTAACCCT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394343 10 + 130588469 GTGTAACCCT
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99120968 10 - 215897965 GTGTAACCCT
i nasLar1.chr1                     C 0 I 151
s rhiRox1.KN295041v1                   34076 10 +    640207 GTGTAACCCT
i rhiRox1.KN295041v1               C 0 I 151
s calJac3.chr18                     46563516 10 -  47448759 GTGGAACCAT
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     35022 10 +    584576 GTGGAACCCT
i saiBol1.JH378335                 C 0 I 44
s otoGar3.GL873592                   8072125 10 -   9938236 ATGGAAACCT
i otoGar3.GL873592                 I 113 I 185
s tupBel1.scaffold_123997.1-347432     77453 10 -    347432 GTGGAAACCT
i tupBel1.scaffold_123997.1-347432 C 0 I 22

a score=82041.000000
s hg38.chr1_KI270714v1_random          13657 22 +     41717 CCACTCATCTCCCCTCACATTC
s panTro4.chr1_GL389124_random         12943 22 +     50403 CCACTCATCTCCCCTCACATTC
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366920 22 -    451211 CCACTCATCTCCCCTCGCATTG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648970 22 - 229942017 CCACTCACCTCCCCTCACATTC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165288 22 + 109391073 CCACTCATCTCCCCTCACATTG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21612 22 -     29987 CCACTCATCTCCCCTCGCATTC
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324875 22 + 227556264 CCACTCATCTCCCCTCGCATTC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173871 22 - 220367699 CCACTCATCTCCCCTCGCATTC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394353 22 + 130588469 CCACTCATCTCCCCTCGCATTC
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563526 21 -  47448759 CCACTCATCTCCCCTCGCACT-
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120978 151 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77463 22 -    347432 I
e saiBol1.JH378335                     35032 44 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=3785.000000
s hg38.chr1_KI270714v1_random          13679 1 +     41717 T
s panTro4.chr1_GL389124_random         12965 1 +     50403 T
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366942 1 -    451211 T
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648992 1 - 229942017 T
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165310 1 + 109391073 T
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21634 1 -     29987 T
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324897 1 + 227556264 T
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173893 1 - 220367699 T
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394375 1 + 130588469 T
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563547 1 -  47448759 T
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     77485 1 -    347432 C
i tupBel1.scaffold_123997.1-347432 I 22 I 25
e nasLar1.chr1                      99120978 151 - 215897965 I
e saiBol1.JH378335                     35032 44 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=76838.000000
s hg38.chr1_KI270714v1_random          13680 22 +     41717 GTGCCATCGATTCTCTCAGAAT
s panTro4.chr1_GL389124_random         12966 22 +     50403 GTGCCATTGATTCTCTCAGAAT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366943 22 -    451211 GTCCCAATGATTCTCTCAGAAT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122648993 22 - 229942017 ATCCCATTGATTCTCTCAGAAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165311 22 + 109391073 GTCCCATTGATTCTCTCAGAAT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21635 22 -     29987 GTCCCATTGATTCTCTCAGAAT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324898 22 + 227556264 GTCCCATTGATTCTCTCAGAAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173894 22 - 220367699 GTCCCACTAGTTCTCTCAGAAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394376 22 + 130588469 GTCCCATTAGTTCTCTCAGAAT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563548 22 -  47448759 CTCCCATTGATTCCCTCAGGAT
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120978 151 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77486 25 -    347432 I
e saiBol1.JH378335                     35032 44 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=600.000000
s hg38.chr1_KI270714v1_random          13702 1 +     41717 C
s panTro4.chr1_GL389124_random         12988 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s calJac3.chr18                     46563570 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     35076 1 +    584576 C
i saiBol1.JH378335                 I 44 I 105
e panPan1.JH650218                    366965 0 -    451211 C
e nasLar1.chr1                      99120978 151 - 215897965 I
e rheMac3.chrUn_JH293294               21657 0 -     29987 C
e tupBel1.scaffold_123997.1-347432     77486 25 -    347432 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e macFas5.chr1                     106324920 0 + 227556264 C
e rhiRox1.KN295041v1                   34086 151 +    640207 I
e chlSab2.chr20                     13394398 0 + 130588469 C
e papAnu2.chr1                      99173916 0 - 220367699 C
e nomLeu3.chr12                     57165333 0 + 109391073 C
e ponAbe2.chr1                     122649015 0 - 229942017 C

a score=4500.000000
s hg38.chr1_KI270714v1_random          13703 1 +     41717 C
s panTro4.chr1_GL389124_random         12989 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366965 1 -    451211 C
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649015 1 - 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165333 1 + 109391073 C
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21657 1 -     29987 C
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324920 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173916 1 - 220367699 C
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394398 1 + 130588469 C
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563571 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120978 151 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77486 25 -    347432 I
e saiBol1.JH378335                     35077 105 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=4190.000000
s hg38.chr1_KI270714v1_random          13704 1 +     41717 C
s panTro4.chr1_GL389124_random         12990 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366966 1 -    451211 C
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649016 1 - 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165334 1 + 109391073 C
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21658 1 -     29987 C
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324921 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173917 1 - 220367699 C
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394399 1 + 130588469 C
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563572 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     77511 1 -    347432 T
i tupBel1.scaffold_123997.1-347432 I 25 I 44
e nasLar1.chr1                      99120978 151 - 215897965 I
e saiBol1.JH378335                     35077 105 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=170157.000000
s hg38.chr1_KI270714v1_random          13705 43 +     41717 CTGTATTCCCCATTTTACTGAATCTTCAGCATGGCTCCTCCCC
s panTro4.chr1_GL389124_random         12991 43 +     50403 CTGTATTCCCCATTTTACTGAATCTTCAGCATGGCTCCTCCCC
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    366967 43 -    451211 CTGTATTCACCATTTTACTGAATCTTCAGCATGGCTCCTTGCC
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649017 43 - 229942017 CCGTATTCTCCATTTTACTGAATCTTCAGCATGGCTCCTTCCC
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165335 43 + 109391073 CTGTATTCTCCATTTTACTGAATCTTCAGCATGGCTCCTTCCC
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21659 43 -     29987 CTGTATTCTCCATTTTACTGAATCTTCAGCATGGCTCCTTCCC
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324922 43 + 227556264 CTGTATTCTCCATTTTACTGAATCTTCAGCATGGCTCCTTCCC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173918 43 - 220367699 CTGTATTCTCCATTTTACTGAATCTTCAGCATGGCTCCTTCCC
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394400 43 + 130588469 CTGTATTCTCCATTTTACTGAATCTTCAGCATGGCTCCTTCCC
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563573 43 -  47448759 CTGTATTCTCCATGTTACTGAATCTTCAGCAAAGCTCCTTCCC
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120978 151 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77512 44 -    347432 I
e saiBol1.JH378335                     35077 105 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=5005.000000
s hg38.chr1_KI270714v1_random          13748 1 +     41717 T
s panTro4.chr1_GL389124_random         13034 1 +     50403 T
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367010 1 -    451211 T
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649060 1 - 229942017 T
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165378 1 + 109391073 T
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21702 1 -     29987 T
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324965 1 + 227556264 T
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173961 1 - 220367699 T
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394443 1 + 130588469 T
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563616 1 -  47448759 T
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     77556 1 -    347432 T
i tupBel1.scaffold_123997.1-347432 I 44 I 79
e nasLar1.chr1                      99120978 151 - 215897965 I
e saiBol1.JH378335                     35077 105 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=222103.000000
s hg38.chr1_KI270714v1_random          13749 59 +     41717 AAACAGGATCCCAATAACCCATCTGAGGTCCAGGAACAGACACCTGTGATGAGCTGTGA
s panTro4.chr1_GL389124_random         13035 59 +     50403 AAACAGGATCCACATAACCCATCTGAGGTCCAGGAACAGACACCTGTGATGAGCTGTGA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367011 59 -    451211 AGAGAGGATCCCAATAATCCATCTGAGGCCCAGGAACAGACGCTTGTGATGAGATTTGA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649061 59 - 229942017 AAAGAGGATCCAAATAATCCATCTGAGGCCCAGGAACAGACACCTGTGATGAGCTGTGA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165379 59 + 109391073 AAAGAGGATCCCAATAACCCATCTGAGGCCCAGGAACAGACACTTGTGATGAGCTGTGA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21703 59 -     29987 AAAGAGGATCCCAATAACCCATCTGAGGCCCAGGAACAGACACCTGTGATGGGCTGTGA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106324966 59 + 227556264 AAAGAGGATCCCAATAACCCATCTGAGGCCCAGGAACAGACACCTGTGATGGGCTGTGA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99173962 59 - 220367699 AAAGAGGATCCCAATAACCCATCTGAGGCCCAGGAACAGACACCTGTGATGGGCTGTGA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394444 59 + 130588469 AAAGAGGATCCCAATAACCCATCTGAGGCCCAGGAACAGACACCTGTGATGGGCTGTGA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563617 59 -  47448759 AAAGAGGATCCCAATAACCCATTGAAGGCCCAGGAATAGACACCTGTGACGAGCTATGA
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99120978 151 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77557 79 -    347432 I
e saiBol1.JH378335                     35077 105 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=5500.000000
s hg38.chr1_KI270714v1_random          13808 1 +     41717 C
s panTro4.chr1_GL389124_random         13094 1 +     50403 C
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367070 1 -    451211 C
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649120 1 - 229942017 C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165438 1 + 109391073 C
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21762 1 -     29987 C
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325025 1 + 227556264 C
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174021 1 - 220367699 C
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394503 1 + 130588469 C
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563676 1 -  47448759 C
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     35182 1 +    584576 C
i saiBol1.JH378335                 I 105 I 22
e nasLar1.chr1                      99120978 151 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77557 79 -    347432 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34086 151 +    640207 I

a score=-834.000000
s hg38.chr1_KI270714v1_random          13809 9 +     41717 CAAAAAAAA
s panTro4.chr1_GL389124_random         13095 7 +     50403 C--AAAAAA
i panTro4.chr1_GL389124_random     C 0 C 0
s calJac3.chr18                     46563677 1 -  47448759 C--------
i calJac3.chr18                    C 0 C 0
e panPan1.JH650218                    367071 0 -    451211 C
e nasLar1.chr1                      99120978 151 - 215897965 I
e rheMac3.chrUn_JH293294               21763 0 -     29987 C
e tupBel1.scaffold_123997.1-347432     77557 79 -    347432 I
e saiBol1.JH378335                     35183 22 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e macFas5.chr1                     106325026 0 + 227556264 C
e rhiRox1.KN295041v1                   34086 151 +    640207 I
e chlSab2.chr20                     13394504 0 + 130588469 C
e papAnu2.chr1                      99174022 0 - 220367699 C
e nomLeu3.chr12                     57165439 0 + 109391073 C
e ponAbe2.chr1                     122649121 0 - 229942017 C

a score=2548.000000
s hg38.chr1_KI270714v1_random          13818 1 +     41717 A
s panTro4.chr1_GL389124_random         13102 1 +     50403 A
i panTro4.chr1_GL389124_random     C 0 C 0
s rheMac3.chrUn_JH293294               21763 1 -     29987 A
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325026 1 + 227556264 A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174022 1 - 220367699 a
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394504 1 + 130588469 A
i chlSab2.chr20                    C 0 C 0
s nasLar1.chr1                      99121129 1 - 215897965 A
i nasLar1.chr1                     I 151 I 17
s rhiRox1.KN295041v1                   34237 1 +    640207 A
i rhiRox1.KN295041v1               I 151 I 17
e panPan1.JH650218                    367071 0 -    451211 C
e tupBel1.scaffold_123997.1-347432     77557 79 -    347432 I
e saiBol1.JH378335                     35183 22 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e calJac3.chr18                     46563678 0 -  47448759 C
e nomLeu3.chr12                     57165439 0 + 109391073 C
e ponAbe2.chr1                     122649121 0 - 229942017 C

a score=66020.000000
s hg38.chr1_KI270714v1_random          13819 17 +     41717 AAAAAAATGGCATTGAT
s panTro4.chr1_GL389124_random         13103 17 +     50403 AAAAAAATGGCATTGAT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367071 17 -    451211 AAAGAAATGGCAGTGAT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649121 17 - 229942017 AAAAAAATGGCAGTGAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165439 17 + 109391073 AAAAAAATGGCAGTGAT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21764 17 -     29987 AAAAAAATGGCAGTGAT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325027 17 + 227556264 AAAAAAATGGCAGTGAT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174023 17 - 220367699 aaaaaaaTGGCAGTGAT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394505 17 + 130588469 AAAAAAATGGCAGTGAT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563678 16 -  47448759 -AAAAAATGGCAGTGAT
i calJac3.chr18                    C 0 C 0
e nasLar1.chr1                      99121130 17 - 215897965 I
e tupBel1.scaffold_123997.1-347432     77557 79 -    347432 I
e saiBol1.JH378335                     35183 22 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e rhiRox1.KN295041v1                   34238 17 +    640207 I

a score=21010.000000
s hg38.chr1_KI270714v1_random          13836 4 +     41717 AAGG
s panTro4.chr1_GL389124_random         13120 4 +     50403 AAGG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367088 4 -    451211 AAGG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649138 4 - 229942017 AAGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165456 4 + 109391073 AAGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21781 4 -     29987 AAGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325044 4 + 227556264 AAGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174040 4 - 220367699 AAGG
i papAnu2.chr1                     C 0 C 0
s nasLar1.chr1                      99121147 4 - 215897965 AAGG
i nasLar1.chr1                     I 17 N 0
s rhiRox1.KN295041v1                   34255 4 +    640207 AAGG
i rhiRox1.KN295041v1               I 17 N 0
s calJac3.chr18                     46563694 4 -  47448759 AAGG
i calJac3.chr18                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     77557 79 -    347432 I
e saiBol1.JH378335                     35183 22 +    584576 I
e otoGar3.GL873592                   8072135 185 -   9938236 I
e chlSab2.chr20                     13394522 0 + 130588469 C

a score=18590.000000
s hg38.chr1_KI270714v1_random          13840 4 +     41717 AAGG
s panTro4.chr1_GL389124_random         13124 4 +     50403 AAGG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367092 4 -    451211 AAGT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649142 4 - 229942017 AAGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165460 4 + 109391073 AAGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21785 4 -     29987 AAGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325048 4 + 227556264 AAGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174044 4 - 220367699 AAGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394522 4 + 130588469 AAGG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563698 4 -  47448759 AAGC
i calJac3.chr18                    C 0 C 0
s saiBol1.JH378335                     35205 4 +    584576 AAGA
i saiBol1.JH378335                 I 22 N 0
s tupBel1.scaffold_123997.1-347432     77636 4 -    347432 AAGA
i tupBel1.scaffold_123997.1-347432 I 79 I 85
e otoGar3.GL873592                   8072135 185 -   9938236 I

a score=104266.000000
s hg38.chr1_KI270714v1_random          13844 26 +     41717 GATGTCATTACATACTActtgtctgg
s panTro4.chr1_GL389124_random         13128 26 +     50403 GATGTCATTACATACTACTTATCTGG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367096 26 -    451211 GATGTTATTACATACCACTTGTCTGG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649146 26 - 229942017 GATGTCATTACATACCACTTGTCTGG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165464 26 + 109391073 GATGTCATTACATACCACTTGTCTGG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21789 26 -     29987 GATGTCATTACATACCACTTGTCTGG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325052 26 + 227556264 GATGTCATTACATACCACTTGTCTGG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174048 26 - 220367699 GATGTCATTACATACCACCTGTCTGG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394526 26 + 130588469 GATGTCATTACATACCACTTGTCTGG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46563702 26 -  47448759 GATGTCATTACACACCACTTGTCTGG
i calJac3.chr18                    C 0 I 693
e tupBel1.scaffold_123997.1-347432     77640 85 -    347432 I
e otoGar3.GL873592                   8072135 185 -   9938236 I

a score=90330.000000
s hg38.chr1_KI270714v1_random          13870 27 +     41717 gctgcctcataacctgatgcatcccta
s panTro4.chr1_GL389124_random         13154 27 +     50403 GCTGCCTCATAACCTGATGCATCCCTA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367122 27 -    451211 GCTGCCTCATAAACTGATGCATCCCTA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649172 27 - 229942017 GCTGCCTCATAACCTGATGCATCCCTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165490 27 + 109391073 GCTGCCTCATAACCTGATGCATCCCTA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21815 26 -     29987 GCTGTCTCCTAA-CTGATGCATCCCTA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325078 26 + 227556264 GCTGCCTCCTAA-CTGATGCATCCCTA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174074 26 - 220367699 GCTGCTTCCTAA-CTGATGCATCCCTA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394552 26 + 130588469 GCTGCCTCCTAA-CTGATGCATCCCTA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564421 27 -  47448759 GCTGCCTCCTCACCTGATGCATCTCTG
i calJac3.chr18                    I 693 C 0
e tupBel1.scaffold_123997.1-347432     77640 85 -    347432 I
e otoGar3.GL873592                   8072135 185 -   9938236 I

a score=3785.000000
s hg38.chr1_KI270714v1_random          13897 1 +     41717 t
s panTro4.chr1_GL389124_random         13181 1 +     50403 T
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367149 1 -    451211 T
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649199 1 - 229942017 T
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165517 1 + 109391073 T
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21841 1 -     29987 T
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325104 1 + 227556264 T
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174100 1 - 220367699 T
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394578 1 + 130588469 T
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564448 1 -  47448759 T
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8072320 1 -   9938236 C
i otoGar3.GL873592                 I 185 I 213
e tupBel1.scaffold_123997.1-347432     77640 85 -    347432 I

a score=83597.000000
s hg38.chr1_KI270714v1_random          13898 24 +     41717 gttacagcagttaccccctcctat
s panTro4.chr1_GL389124_random         13182 24 +     50403 GTTACAGCAGTTACCCCCTCCTAT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367150 24 -    451211 GTTACAGCAGTTACAACATCCTGT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649200 24 - 229942017 GTTACAGCAGTTACCACATCCTGT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165518 24 + 109391073 GTTACAGCAGTTACCACATCCTGT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21842 24 -     29987 ATTACAGCAGTTACCACATCCTGT
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325105 24 + 227556264 ATTACAGCAGTTACCACATCCTGT
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174101 24 - 220367699 GTTACAGCAGTTACCACATCCTGT
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394579 24 + 130588469 GTTACAGCAGTTACCACATCCTGT
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564449 23 -  47448759 G-TACAGCAGTTACCACACCCTAT
i calJac3.chr18                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     77640 85 -    347432 I
e otoGar3.GL873592                   8072321 213 -   9938236 I

a score=18800.000000
s hg38.chr1_KI270714v1_random          13922 4 +     41717 taaa
s panTro4.chr1_GL389124_random         13206 4 +     50403 TAAA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367174 4 -    451211 TAAA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649224 4 - 229942017 TAAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165542 4 + 109391073 TAAA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21866 4 -     29987 TAAA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325129 4 + 227556264 TAAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174125 4 - 220367699 TAAA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394603 4 + 130588469 TAAA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564472 4 -  47448759 TAAA
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     77725 4 -    347432 TGAA
i tupBel1.scaffold_123997.1-347432 I 85 I 135
e otoGar3.GL873592                   8072321 213 -   9938236 I

a score=501132.000000
s hg38.chr1_KI270714v1_random          13926 134 +     41717 attacctgtttatgtgccatctttccttaccatattaagtatctcaagggcagccattggttttattgccccatgccaatgcctagtgtgttatctgaaaaattaagtacccaagaaatattcatgttgTAAAA
s panTro4.chr1_GL389124_random         13210 134 +     50403 ATTACCTGTTTATGTGCCATCTTTCCTTACCATATTAAGTATCTCAAGCGCAGCCATTGGTTTTATTGCCCCATGCCAATGCCTAGTGTGTTATCTGAAAAATTAAGTACTCAAGAAATATTTATGTTGTAAAA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367178 133 -    451211 GTTACCTGTTTGCGTGCCATCTTTCCTTACCATATTAAGTATCTCAAGGGCAGCCATTGGTTTTATTGCCTCATGCCAATGCCTAGTGTGTTATCTGAAAAATTAAGTACTCAAGAAATATT-ATGTTATAAAA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649228 134 - 229942017 ATGACCTGTTTGTGTGCCATCTTTCCTTACCATATTAAGTATCTCAAGGGCAGCCATTGGTTTTATTGCCCCATGCCAATGCCTAGTGTGTTATCTGAAAAATTAAATACTCAAGAAATATTTACATTGTAAAA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165546 134 + 109391073 ATTACCTGTTTGTGTGCCATCTTTTCTGACCATATTAAGTATCTCAAGGGCAGCCATTAGTTTTATTGCCCCATGCCAGTGCCTAGTGTGTTATCTGAAAAATTAAGTACTAAAGAAATATTTATGTTATAAAA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               21870 134 -     29987 ATTACCTGTTTGTGTGCCACCTTTCCTTACCATATTAGGTATCTCAAGGGCAGCCATTGGTTTTATTGCCCCATGCCAATGCCTAGTGTGTTATCTGAAAAATTAAGTACTCAAGAAATATTTATATTGTAAAA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325133 134 + 227556264 ATTACCTGTTTGTGTGCCATCTTTCCTTACCATATTAGGTATCTCAAGGGCAGCCATTGGTTTTATTGCCCCATGCCAATGCCTAGTGTGTTATCTGAAAAATTAAGTACTCAAGAAATATTTATATTGTAAAA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174129 134 - 220367699 ATTACCTGTTTGTGTGCCATCTTTCCTTATCACATTAAGTATCTCAAGGGCAGCCATTGGTTATATTGCCCCATGCCAATGCCTAGTGTGTTATCTGAAAAATTaagtactcaagaaatatttatgttataAAA
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394607 134 + 130588469 ATTACCTGTTTGTGTGCCATCTTTCCTTACCATATTAAGTATCTCAAGGGCAGCCATTGGTTTTATTACCCCATGCCAATGCCTAGTGGGTTATCTGAAAAATTAAGTACTCAAGAAATATTTATGTTATAAAA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564476 131 -  47448759 ATGatctgtttttgtactgtctttcttcaccatatta---atctcaagggcagccattggttttattgcctgatgccaatgcctagtgtgttatctgaaaaattaagtcctcaagaaatatgtatATTGCAAAA
i calJac3.chr18                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     77729 135 -    347432 I
e otoGar3.GL873592                   8072321 213 -   9938236 I

a score=2329.000000
s hg38.chr1_KI270714v1_random          14060 1 +     41717 G
s panTro4.chr1_GL389124_random         13344 1 +     50403 G
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367311 1 -    451211 G
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649362 1 - 229942017 G
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165680 1 + 109391073 G
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               22004 1 -     29987 A
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325267 1 + 227556264 A
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174263 1 - 220367699 G
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394741 1 + 130588469 G
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564607 1 -  47448759 G
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     77864 1 -    347432 A
i tupBel1.scaffold_123997.1-347432 I 135 I 34
e otoGar3.GL873592                   8072321 213 -   9938236 I

a score=127078.000000
s hg38.chr1_KI270714v1_random          14061 36 +     41717 GCTTTCTAAAGGCTGAATGTAGGCAGAATATTATTC
s panTro4.chr1_GL389124_random         13345 36 +     50403 GCTTTCTAAAGGCTGAATGGAGGCAGAATATTATTA
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367312 36 -    451211 TCTTTCTAAAAGCTGAATGTAGGCAGAATATTATTA
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649363 36 - 229942017 CCTTTCTAAAGGCTGAATGTAGGCAGAATATTATTA
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165681 36 + 109391073 CCTTTCTAAAGGCTGAATATAGGCAGAATATTACTA
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               22005 36 -     29987 CCTTTCTAAAGGCTAAATATAGACTGAATATTATTA
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325268 36 + 227556264 CCTTTCTAAAGGCTAAATGTAGACTGAATATTATTA
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174264 36 - 220367699 CCTTTCCAAAGGCTGAATGTAGACtgaatattatta
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394742 36 + 130588469 CCTTTCTAAAGGCTGAATGTAGACTGAATATTATTA
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564608 36 -  47448759 CCTTTCTAAAGGCTGAATGTGGGCAGAATATTATTA
i calJac3.chr18                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     77865 34 -    347432 I
e otoGar3.GL873592                   8072321 213 -   9938236 I

a score=-4780.000000
s hg38.chr1_KI270714v1_random          14097 1 +     41717 -C
s panTro4.chr1_GL389124_random         13381 1 +     50403 -C
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367348 1 -    451211 -C
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649399 1 - 229942017 -C
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165717 1 + 109391073 -T
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               22041 1 -     29987 -T
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325304 1 + 227556264 -T
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174300 1 - 220367699 -t
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394778 1 + 130588469 -T
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564644 1 -  47448759 -G
i calJac3.chr18                    C 0 C 0
s micMur1.scaffold_100200                932 1 -      1692 A-
i micMur1.scaffold_100200          N 0 N 0
e tupBel1.scaffold_123997.1-347432     77865 34 -    347432 I
e otoGar3.GL873592                   8072321 213 -   9938236 I

a score=8038.000000
s hg38.chr1_KI270714v1_random          14098 3 +     41717 TGT
s panTro4.chr1_GL389124_random         13382 3 +     50403 TGT
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367349 3 -    451211 TAT
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649400 3 - 229942017 TAT
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165718 3 + 109391073 TAT
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               22042 3 -     29987 TAC
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325305 3 + 227556264 TAC
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174301 3 - 220367699 tac
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394779 3 + 130588469 TAC
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564645 3 -  47448759 TAT
i calJac3.chr18                    C 0 C 0
s otoGar3.GL873592                   8072534 3 -   9938236 CAC
i otoGar3.GL873592                 I 213 N 0
e tupBel1.scaffold_123997.1-347432     77865 34 -    347432 I

a score=19821.000000
s hg38.chr1_KI270714v1_random          14101 6 +     41717 TGTTTG
s panTro4.chr1_GL389124_random         13385 6 +     50403 TGTTTG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367352 6 -    451211 AGTTTG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649403 6 - 229942017 TGTTTG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165721 6 + 109391073 TGCTTG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               22045 6 -     29987 TGTTTG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325308 6 + 227556264 TGTTTG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174304 6 - 220367699 tgctcG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394782 6 + 130588469 TGCTTG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564648 6 -  47448759 TGTTTG
i calJac3.chr18                    C 0 C 0
e tupBel1.scaffold_123997.1-347432     77865 34 -    347432 I

a score=9195.000000
s hg38.chr1_KI270714v1_random          14107 2 +     41717 TG
s panTro4.chr1_GL389124_random         13391 2 +     50403 TG
i panTro4.chr1_GL389124_random     C 0 C 0
s panPan1.JH650218                    367358 2 -    451211 TG
i panPan1.JH650218                 C 0 C 0
s ponAbe2.chr1                     122649409 2 - 229942017 TG
i ponAbe2.chr1                     C 0 C 0
s nomLeu3.chr12                     57165727 2 + 109391073 TG
i nomLeu3.chr12                    C 0 C 0
s rheMac3.chrUn_JH293294               22051 2 -     29987 TG
i rheMac3.chrUn_JH293294           C 0 C 0
s macFas5.chr1                     106325314 2 + 227556264 TG
i macFas5.chr1                     C 0 C 0
s papAnu2.chr1                      99174310 2 - 220367699 TG
i papAnu2.chr1                     C 0 C 0
s chlSab2.chr20                     13394788 2 + 130588469 TG
i chlSab2.chr20                    C 0 C 0
s calJac3.chr18                     46564654 2 -  47448759 TA
i calJac3.chr18                    C 0 C 0
s tupBel1.scaffold_123997.1-347432     77899 2 -    347432 tg
i tupBel1.scaffold_123997.1-347432 I 34 N 0

a score=39696.000000
s hg38.chr1_KI270714v1_random      14109 10 +     41717 GTACAAAGAG
s panTro4.chr1_GL389124_random     13393 10 +     50403 GTACAAAGAG
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650218                367360 10 -    451211 GTACAAAGAG
i panPan1.JH650218             C 0 C 0
s ponAbe2.chr1                 122649411 10 - 229942017 GTACAAAGAG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr12                 57165729 10 + 109391073 GTACAAAGAG
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           22053 10 -     29987 GTACGAAGAG
i rheMac3.chrUn_JH293294       C 0 C 0
s macFas5.chr1                 106325316 10 + 227556264 GTACGAAGAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                  99174312 10 - 220367699 GTACGAAGAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                 13394790 10 + 130588469 GTACGAAGAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr18                 46564656 10 -  47448759 GTACAAAGAG
i calJac3.chr18                C 0 C 0

a score=1062088.000000
s hg38.chr1_KI270714v1_random         14119 257 +     41717 ------ACCTTTCTCTTGGTACCTCTTGATTCACATGGG-AGAACGTTTTAAAGTAAACACTGTCATCTCGAGCCCTTCTCCAGTGGTTTTTCATTCCATCTAAGCCTACATTGACTTGGTGGGCATCCACTGTGAAGGTAGCCCCAAGGTCAAGGCTCTGGGGTCTGGGGCAAGGCCTCACAGTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCTGTCGATGGTGCTGGTC
s panTro4.chr1_GL389124_random        13403 257 +     50403 ------ACCTTTCTCTTGGTACCTCCTGATTCACATGGG-AGAACGTTTTAAAGTAAACACTGTCATCTCGAGCCCTTCTCCAGTGGTTTTTCATTCCATCTAAGCCTACACTGACTTGGTCGGCATCCACTGTGAAGGTAGCCCCAAGGTCAAGGCTCTGGGGTCTGGGGCAAGGCCTCACAGTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGCGTTTATTCTGTCGATGGTGCTGGTC
i panTro4.chr1_GL389124_random    C 0 C 0
s panPan1.JH650218                   367370 257 -    451211 ------ACCCTTCTCTTGGTACCTCCTGATTCACATGGG-GGAAACTTTTATGGTAAACACTGACATATTGAGCCCTTCTCCAGTTGTTTTCCATTCCACCTAAGCCCACACTTACTTGGTGGGCATCCACTGGGAAGGTAGCCCCAAGGTCAAGGCTCTGGGGTCTGGGGCAAGGCCTCACGGTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAGCCAGTTCTGTGTTTATTCTGTCGATGGTGCTGCTC
i panPan1.JH650218                C 0 C 0
s ponAbe2.chr1                    122649421 257 - 229942017 ------ACCCTTCTCTGGGTACCTCCTGATTCACATGGG-AGAACGTTTTATGGTAAACACTGTCATCTTGAGCCCTTCTCCAATTGTTTTTCATTCCATCTAAGCCCACACTTACTTGGTGGGCATCCACTGTGAAGGCAGCCCCAAGGTCAAGGCTCTGGGGTCTGGGGCAAGGCCTCACAGTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCTGTCGATGGTGCTGGTC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr12                    57165739 257 + 109391073 ------ACCCTTCTCTTGGTACCTCCTGATTCATATGGG-AGAACGTTTTAAGGTAAACACTGTCATCTCGAGCCCTTCTCCAATTGTTTTTCACTCCATCTAAGCCCACACTTACTTGGTGGGCGTCCACTGTGAAGGTAGCCCCAAGGTCAAGGCTCTGGGGTCTGGGGCAAGGCCTCACAGTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCTGTCGATGGTGCTGGTC
i nomLeu3.chr12                   C 0 C 0
s rheMac3.chrUn_JH293294              22063 257 -     29987 ------ACCCTTCTCTTGGTACCTCCTGATTCACATGGG-AGAATGTTTTAAGGTAAACACTGTCATCTCGAGCCCTTCTCCAATTGTTTTTCGTTCCATCTAAGCCCACACTTACTTGGTGGGCATCCACTGTGAAGGTAGCCCCAAGGTCAAGTCTCTGGGGTCTGGGGCAAGTCCTCACATTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCTGTCCATGGTGCTGGTC
i rheMac3.chrUn_JH293294          C 0 C 0
s macFas5.chr1                    106325326 257 + 227556264 ------ACCCTTCTCTTGGTACCTCCTGATTCACATGGG-AGAATGTTTTAAGGTAAACACTGTCATCTCGAGCCCTTCTCCAATTGTTTTTCGTTCCATCTAAGCCCACACTTACTTGGTGGGCATCCACTGTGAAGGTAGCCCCAAGGTCAAGGCTCTTGGGTCTGGGGCAAGGCCTCACATTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCTGTCGATGGTGCTGGTC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                     99174322 257 - 220367699 ------ACCCTTCTCTTGGTACCTCCTGATTCACGTGGG-AGAACGTTCTAAGGTAAACACTGTCGTCTTGAGCCCTTCTCCAATTGTTTTTCATTCCATCTAAGCCCACACTTACTTGGTGGGCATCCACTGAGAAGGTAGCCCCAAGGTCAAGGCTCTTGGGTCTGGAGCAAGACCTCACATTCACATTTCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCTGTCGATGGTGCTGGTC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20                    13394800 257 + 130588469 ------ACCCTTCTCTTGGTACCTCCTGATTCACATGGG-AGAACGTTTTAAGGTAAACACTGTCATCTCGAGCACTTCTCCAATTGTTTTTCATTCCATCTAAGCCCACACTTACTTGGTGGGCATCCACTGTGAAGGTAGCCCCAAGGTCAAGGCTCTTGGGTCTGGAGCAAGGCCTCACATTCACATTCCCCTCCTCTTGGTGTTGGTGCTTCCCAGGAGAACCAACCAGTTCTGTATTTATTCTGTCCATGGTGCTGGTC
i chlSab2.chr20                   C 0 C 0
s calJac3.chr18                    46564666 251 -  47448759 ------ACC-TTCTCTTGGTACCTCCTGATTCAC------AGAACTTTTTAAGGTAAAAACTGTCATTTTGAGCCATTCTCCAATTGATTTTCATTCCATCTAAGTGCACACTTACGTGGTGGGCATCCGCTGTGAAGGCAGCCCCCAGGTCAAGGCTCTGGGGTCTGGGGCAAGGCATCACAGTCACAGTCCCCTCCTCTTGGTGTTGTTGCTTCCCAGGAGAACCAACCAGTTCTGTGTTTATTCCGTCGATCATGCTGGTC
i calJac3.chr18                   C 0 C 0
s tupBel1.scaffold_113496.1-55919     55228 259 +     55919 ATGGGTCCCCTTACCTTGGCCCCACTTG---CACTAGGGCAGAACTGTTTAAGGTGAGCATGGATGTCTTCCACACTTCTCTTAACAAACACTACTCTCTCTAAGCCCACACTCACTAGGTGGGTATCGATAGTGAGGGTAG--CCAAGGTCGAGGATTCCAGGTCTGAGGCAGTGCCTCATGGTCACATCCTCCCCCTCTTTGAGTTGCTGCCTCTCCTCAGAATAAACCTGCTCTGTGTCCATCCTGTGCGCCTTCCTGGAC
i tupBel1.scaffold_113496.1-55919 N 0 N 0

a score=1058735.000000
s hg38.chr1_KI270714v1_random      14376 257 +     41717 AGATGCACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCTTTGCTACTCAGCACAAGTTGTTC-TTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGACTACTCTCACTCAGACCCTCTTTGGCAACCACAGTCTCAACCACCACCTTGCCCTTCTCCTTGTCTTCCTCAATCTCCCATCCCTCAGACATT----------TCTGCTCTTTCAGCTCTGCATTCTCAAGGC
s panTro4.chr1_GL389124_random     13660 267 +     50403 AGATGCACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCTTTGCTACTCAGCACAAGTTGTTC-TTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGACTACTCTCGCTCAGACCCTCTTTGGCAACCACAGTCTCAACCACCACCTTGCCCTTCTCCTTGTCTTCCTCAATCTCCCATCCCTCAGACATTTCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650218                367627 268 -    451211 AGATTCAGAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCCTTGCTACTCAGCACAAGTTGTTCTTTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCACTCAGACCATCTTTGGCTACCACAGTCTCAACCAACACCTCGCCCTTCTCCTTGTCTTCCTTGATCTCCCATCCATCAGACATTGCTTCTCCCATATGCTCTTTCAGCTCTGCATTCTCAAGGC
i panPan1.JH650218             C 0 C 0
s ponAbe2.chr1                 122649678 265 - 229942017 AGATGCACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCCTTGCTACTCAGCACAAGTTATTCTTTGAGGAGGT---TGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCACTCAGACCCTCTTTGGCTACCACAGCCTCAACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr12                 57165996 268 + 109391073 AGATGCACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCCTTGCTACTCAGCACAAGTTGTTCTTTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCACTCAGACCCTCTTTGGCTACCACAGTCTCAACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i nomLeu3.chr12                C 0 I 3465
s rheMac3.chrUn_JH293294           22320 268 -     29987 AGATGAACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCCTAGCTACTCAGCACAAGTTGTTCTTTGAGGAGGCTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCACTCAGACCCTCTTTGGCTACTACAGTCTCAACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i rheMac3.chrUn_JH293294       C 0 I 3402
s macFas5.chr1                 106325583 268 + 227556264 AGATGCACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCCTTGCTACTCAGCACAAGTTGTTCTTTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCACTCAGACCCTCTTTGGCTACTACAGTCTCAACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i macFas5.chr1                 C 0 I 3436
s papAnu2.chr1                  99174579 268 - 220367699 AGATGCACAAGGAGCTCTGGAGTAAGTTTACTATTCCCTTCTTTGCTACTCAGCACAAGTTGTTCTTTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCACTCAGACCCTCTTTGGCTACCACAGTCTCAACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i papAnu2.chr1                 C 0 I 6207
s chlSab2.chr20                 13395057 268 + 130588469 AGATGCACAAGTAGCTCTGGAGTAAGTTTACTATTCCCTTCCTTGCTACTCAGCACAAGTTGTTCTTTGAGGAGGTTGATGATATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCCGAAGGCTACTCTCACTCAGACCCTCTTTGGTTACCACAGTCTCAACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i chlSab2.chr20                C 0 I 3179
s calJac3.chr18                 46564917 268 -  47448759 AGATGCACAAGGACCTCTGGAGTAAGCTTACTATTCCCTTCCTTACTACTCAGCACAAGCTGCTCTCTGAGGAGGCTGATGACATTGTGGGCATTCTTCAGTTTTCCCTGGAGCTTTCTGAACTCAGCCTGAAGGCTACTCTCTCTCAGACCCTGTTTGGCTGCCACAGTCTCCACCATCACCTCGCCCTTCTCCTTGTCTTCCTCGATCTCCCATCCATCAGACATTGCTTCTCCCATCTGCTCTTTCAGCTCTGCATTCTCAAGGC
i calJac3.chr18                C 0 C 0

a score=8190.000000
s hg38.chr1_KI270714v1_random      14633 2 +     41717 AA
s panTro4.chr1_GL389124_random     13927 2 +     50403 AA
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650218                367895 2 -    451211 AA
i panPan1.JH650218             C 0 C 0
s ponAbe2.chr1                 122649943 2 - 229942017 AA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr12                 57169729 2 + 109391073 AA
i nomLeu3.chr12                I 3465 C 0
s rheMac3.chrUn_JH293294           25990 2 -     29987 AA
i rheMac3.chrUn_JH293294       I 3402 C 0
s macFas5.chr1                 106329287 2 + 227556264 AA
i macFas5.chr1                 I 3436 C 0
s papAnu2.chr1                  99181054 2 - 220367699 aa
i papAnu2.chr1                 I 6207 C 0
s chlSab2.chr20                 13398504 2 + 130588469 AA
i chlSab2.chr20                I 3179 C 0
s calJac3.chr18                 46565185 2 -  47448759 AA
i calJac3.chr18                C 0 I 3350

a score=8595.000000
s hg38.chr1_KI270714v1_random      14635 2 +     41717 AG
s panTro4.chr1_GL389124_random     13929 2 +     50403 AG
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650218                367897 2 -    451211 AG
i panPan1.JH650218             C 0 N 0
s ponAbe2.chr1                 122649945 2 - 229942017 AG
i ponAbe2.chr1                 C 0 N 0
s nomLeu3.chr12                 57169731 2 + 109391073 AG
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           25992 2 -     29987 AG
i rheMac3.chrUn_JH293294       C 0 C 0
s macFas5.chr1                 106329289 2 + 227556264 AG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                  99181056 2 - 220367699 ag
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                 13398506 2 + 130588469 AG
i chlSab2.chr20                C 0 C 0
s calJac3.chr18                 46568537 2 -  47448759 AG
i calJac3.chr18                I 3350 C 0

a score=130599.000000
s hg38.chr1_KI270714v1_random      14637 51 +     41717 ATGGGTTCTGGGTCTCCACAGTTGCCAGACTTTTCTCCAAAGCCACCTTGA
s panTro4.chr1_GL389124_random     13931 51 +     50403 ATGGGTTCTGGGTCTCCACAGTTGCCAGACTTTTCTCCAAAGCCACCTTGA
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr12                 57169733 51 + 109391073 ATGGGTTCTGGGTCTCCACAGTTGCCAGAGTTTTCTCCAAAGCCACCTTGA
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           25994 51 -     29987 ATGGGTTCTGGGTCTCCACAGTTGCCAGACTTTTCTCCAAAGCCACCTTGA
i rheMac3.chrUn_JH293294       C 0 C 0
s macFas5.chr1                 106329291 51 + 227556264 ATGGGTTCTGGGTCTCCACAGTTGCCAGACTTTTCTCCAAAGCCACCTTGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                  99181058 51 - 220367699 aTGGATTCTGGGTCTCCACAGTTGCCAGACTTTTCTCCAAAGCCACCTTGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                 13398508 51 + 130588469 ATGGGTTCTGGGTCTCCACAGTTGCGAGACTTTTCTCCAAAGCCACCTTGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr18                 46568539 51 -  47448759 ATGGGTTCTGGGTCTCCATAGTTGCCAGACTTTTTTCCAAAGCCACCTTGA
i calJac3.chr18                C 0 C 0

a score=7945.000000
s hg38.chr1_KI270714v1_random      14688 5 +     41717 GGAAC
s panTro4.chr1_GL389124_random     13982 5 +     50403 GGAAC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr12                 57169784 5 + 109391073 CGAGC
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           26045 5 -     29987 CAAGC
i rheMac3.chrUn_JH293294       C 0 C 0
s macFas5.chr1                 106329342 5 + 227556264 CAAGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                  99181109 5 - 220367699 CAAGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                 13398559 5 + 130588469 CAAGC
i chlSab2.chr20                C 0 C 0
s nasLar1.chr1                  18101256 5 + 215897965 GGAAC
i nasLar1.chr1                 N 0 N 0
s calJac3.chr18                 46568590 5 -  47448759 TGAGC
i calJac3.chr18                C 0 C 0

a score=2548.000000
s hg38.chr1_KI270714v1_random      14693 1 +     41717 T
s panTro4.chr1_GL389124_random     13987 1 +     50403 T
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr12                 57169789 1 + 109391073 T
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           26050 1 -     29987 T
i rheMac3.chrUn_JH293294       C 0 C 0
s macFas5.chr1                 106329347 1 + 227556264 T
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                  99181114 1 - 220367699 T
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                 13398564 1 + 130588469 T
i chlSab2.chr20                C 0 C 0
s calJac3.chr18                 46568595 1 -  47448759 T
i calJac3.chr18                C 0 C 0

a score=2300.000000
s hg38.chr1_KI270714v1_random      14694 1 +     41717 A
s panTro4.chr1_GL389124_random     13988 1 +     50403 A
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr12                 57169790 1 + 109391073 A
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           26051 1 -     29987 A
i rheMac3.chrUn_JH293294       C 0 C 0
s macFas5.chr1                 106329348 1 + 227556264 A
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                  99181115 1 - 220367699 A
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                 13398565 1 + 130588469 A
i chlSab2.chr20                C 0 C 0
s calJac3.chr18                 46568596 1 -  47448759 G
i calJac3.chr18                C 0 C 0
s micMur1.scaffold_65870             289 1 -      4688 A
i micMur1.scaffold_65870       N 0 N 0

a score=344832.000000
s hg38.chr1_KI270714v1_random      14695 149 +     41717 AAAGAAAATCATGCTTTGAAGAAGTTAGGCCATTAAAGAGGGCCCAAGAGAAACATGAGATTGCAAAGGTAGTTTTTGATGAGAACAAAAACAAACAAAAAAAGCAGATCTAAAATGAACTCCCTACCCAGAACCTCCTTAGTCAGGCA
s panTro4.chr1_GL389124_random     13989 149 +     50403 AAAGAAAATCATGCATTGAAGAAGTTAGGCCATTAAAGAGGGCCCAAGAGAAACATGAGATTGCAAAGGTAGTTTTTGATGAGAACAAAAACAAACAAAAAAAGCAGATCTAAAATGAACTCCCTACCCAGAACCTCCTTAGTCAGGCA
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr12                 57169791 148 + 109391073 AAAGAAAATCATGGTTTGAAGAAGTTAGGCCATTAAAGAGGACCCAAGAGAAACATGAGATTGCAAAGGCAGTTTTCAATGAGAACAAAAACAAACAAAAAAAGCAGATCTAAAATGAACTCCCTACCCAGAACCTCCTTAGTCAGGC-
i nomLeu3.chr12                C 0 C 0
s rheMac3.chrUn_JH293294           26052 149 -     29987 AAAGAAAATCATGGTTTGAAGAAGTTAGGCCATTAAAGAGGACCCAAGAGAAACATGAGATTGCAAAGGCAGTTCTCAATGAGAACAAAAACAAACAAAAAAAGCAGATCTAAAATGAACTCCCTATCCAGAACCTCCTTAGTCAGGCA
i rheMac3.chrUn_JH293294       C 0 N 0
s macFas5.chr1                 106329349 149 + 227556264 AAAGAAAATCATGGTTTGAAGAAGTTAGGCCATTAAAGAGGACCCAAGAGAAACATGAGATTGCAAAGGCAGTTCTCAATGACAACAAAAACAAACAAAAAAAGCAGATCTAAAATGAACTCCCTATCCAGAACCTCCTTAGTCAGGCA
i macFas5.chr1                 C 0 N 0
s papAnu2.chr1                  99181116 149 - 220367699 AAAGAAAATCATGGTTTGAAGAAGTTAGGCCATTAAAGAGGACCCAAGAGAAACATGAGATTGCAAAGGCAGTTCTCAGTgcgaacaaaaacaaacaaaaaaagcagatcTAAAATGAACTTCCTACCCAGAACCTCCTTAGTCAGGCA
i papAnu2.chr1                 C 0 N 0
s chlSab2.chr20                 13398566 149 + 130588469 AAAGAAAATTGTGGTTTGAAGAAGTTAGGCCATTAAAGAGGACCCAAGAGAAACATGAGATTGCAAAGGCAGTTCTCAATGAGAACAAAAACAAACAAAAAAGGCAGATCTAAAATGAACTCCCTACCCAGAACCTCCTTAGTCAGGCA
i chlSab2.chr20                C 0 N 0
s calJac3.chr18                 46568597 144 -  47448759 AAAGAAAATCATGGTTTGGAGAAGTTAGGTCACTAAAGAGCACCCCAGAGAAACATGAGATTGCAAAGGCAACTTTCAATCAG----GAAGAAAAAAAAAAAAGCAGATCTAAAATGAACACCCTACCCAGAACCTCCTTAGTCAGGC-
i calJac3.chr18                C 0 C 0

a score=3658.000000
s hg38.chr1_KI270714v1_random     14844 8 +     41717 ATAAGAGC
s panTro4.chr1_GL389124_random    14138 8 +     50403 ATAAAAGC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr12                57169939 8 + 109391073 ATAAGGGC
i nomLeu3.chr12                C 0 N 0
s calJac3.chr18                46568741 8 -  47448759 ATAAGGGC
i calJac3.chr18                C 0 N 0

a score=37735.000000
s hg38.chr1_KI270714v1_random  14852 432 + 41717 AATAAGATCTCAAGACTAAGTTttattattattattattattattattattatttgagacagggtctcgctctgttgccggggtggagcgcagtggtgagatcatggctcactgcagccacgacctcctgggctcacgtaatcctcccacctcagcctcccaagtagctggaaccacaggtgtgtgccactacacccagctaattttttttttttaatcgagacggagtctcgctctgtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcccaggttcaagcgattttcctgcctcagccttctgagtagctgggattataggagcgtgccaccatgcccagctaatttttgtagttttagtagagacggggtttcaccatgttggtcaggctggtcttgaactcctgac
s panTro4.chr1_GL389124_random 14146 417 + 50403 AATAAGATCTCAAGACTAAGtt---------------ttattattattattatttgagacagggtctcgctctgttgccagggtggagcgcagtggtgagatcatggctcactgcagccacaacctcctgggctcacgtaatcctcccacctcagcctcccaagtagctggaaccacaggtgggtgccactacacccagctaatttttttttttttatcgagatggagtctcgctctgtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcccaggttcaagtgattttcctgcctcagccttctgagtagctgggattataggagcgtgccaccatgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgac
i panTro4.chr1_GL389124_random C 0 C 0

a score=76977.000000
s hg38.chr1_KI270714v1_random      15284 369 +     41717 ctcaggtgatcattctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgagcccggcccacccagctaa-----------ttttttttttttttgaaatggagtctcactc-tgttgcccaggctggagtacaaaatggcgtgatcccggctaactgcaacctccgcttcccagattcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccatcacacccacctaa-tttttatatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctacccgcttcagcctcccaaagtgctgggattacaggtatgatccactg
s panTro4.chr1_GL389124_random     14563 369 +     50403 ctcaggtgatcattctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgagcccggccCACCCAGCTAA-----------ttttttttttttttgaaatggagtctcactc-tgttgcccaggctggagtacaaaatggtgtgatcccggctaactgcaacctccgcctcccagattcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccatcacacccacctaa-tttttatatttttagtagagacggggtttcaccatgttggccaggctgatcttgaactcctgacttcaggtgatccacccgcttcagcctcccaaagtgctgggattacatgtatgatccactg
i panTro4.chr1_GL389124_random C 0 M 370
s calJac3.chr7                 114986687 369 - 155834243 ctcaagtaatcctcccacctcagcatcccaagtagttgggaccactggtgtgtgccacta---------cacccagctaattaaaaacattttttttttttttttgagacagagtttcactcttgttacccaggctggagtgc--aatggcctgatctctgctcactgcaacctctgcctcctgggttcaggcaattctcctgcctcagcctcctgagtagctgggattacaggcacacgccaccatgcccagctaattttttgtattttcagtagagacggggtttgatcatgttgaccaggatggtcttgatctgttgacctt--gtgatccacccgccctggcctcccaaagtgctgggattacaggcgtgagccacca
i calJac3.chr7                 N 0 C 0

a score=-295.000000
s hg38.chr1_KI270714v1_random      15653 23 +     41717 tgcgcagccccgtgcagctaatt
s calJac3.chr7                 114987056 10 - 155834243 cgcccagtc-------------t
i calJac3.chr7                 C 0 C 0
e panTro4.chr1_GL389124_random     14932 370 +     50403 M

a score=-105.000000
s hg38.chr1_KI270714v1_random      15676 18 +     41717 aaaaaaaattttttttcg-------
s papAnu2.chr1                 211055373  8 - 220367699 aaaaaaaa-----------------
i papAnu2.chr1                 N 0 I 5
s calJac3.chr7                 114987066 24 - 155834243 -aaaaacattttttttttttttttg
i calJac3.chr7                 C 0 C 0
e panTro4.chr1_GL389124_random     14932 370 +     50403 M

a score=29.000000
s hg38.chr1_KI270714v1_random      15694 1 +     41717 t
s panTro4.chr1_GL389124_random     15303 1 +     50403 T
i panTro4.chr1_GL389124_random M 370 C 0
s calJac3.chr7                 114987090 1 - 155834243 c
i calJac3.chr7                 C 0 C 0
e papAnu2.chr1                 211055381 5 - 220367699 I

a score=320.000000
s hg38.chr1_KI270714v1_random      15695 14 +     41717 -----aggcctggtgtgaa
s panTro4.chr1_GL389124_random     15304 13 +     50403 -----AGGCCTGGTGT-AA
i panTro4.chr1_GL389124_random C 0 C 0
s macFas5.chr1                 221904519  9 + 227556264 -----aggcgcggt-----
i macFas5.chr1                 N 0 C 0
s papAnu2.chr1                 211055386  9 - 220367699 -----aggcgcggt-----
i papAnu2.chr1                 I 5 C 0
s calJac3.chr7                 114987091 14 - 155834243 aggccaggtacagt-----
i calJac3.chr7                 C 0 C 0

a score=86351.000000
s hg38.chr1_KI270714v1_random      15709 77 +     41717 ggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccagca
s panTro4.chr1_GL389124_random     15317 77 +     50403 ggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggggttcgagaccagca
i panTro4.chr1_GL389124_random C 0 C 0
s macFas5.chr1                 221904528 75 + 227556264 ggctcatatctgtaatcccagcactttgggaggccgaggcaggcggaccac--aaggtcaggagatcgagaccatcc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055395 75 - 220367699 ggctcatatctgtaatccgagcactttgggaggccgaggcaggcggaccac--aaggtcaggagatcgagaccatcc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125284925 75 + 130588469 ggctcatatctgtaatcccagcactttgggaggccgaggcaggcggatcac--aaggtcaggagatcgagaccatcc
i chlSab2.chr20                N 0 C 0
s calJac3.chr7                 114987105 77 - 155834243 ggctcatgcctgtaatcctagcactttggaaggccaaggagggtggatcacctgaggtcaggagttcaagaccagcc
i calJac3.chr7                 C 0 C 0

a score=285991.000000
s hg38.chr1_KI270714v1_random      15786 201 +     41717 tgaccaacatggcaaaacccggcctctact-----aaaaatacaa--aaatt---agccaggcgtggtggcaggcgcctgtaatcccaactacctggg-aggctgaggcaggagaatcacttgaacccaggaggtagaggttgcagtgagccaagattgtgccattgcactccagcctgggcaacaagagcaaaactctgtctcaaaaaaaa
s panTro4.chr1_GL389124_random     15394 201 +     50403 tgaccaacatggcaaaacccggcctctact-----aaaaatacaa--aaatt---agccaggcgtggaggcaggcgcctgtaatcccaactacctggg-aggctgaggcaggagaatcacttgaacccaggaggtagaggttgcagtgagccaagatggtgccattgcactccagcctgggcaacaagagcaaaactctgtctcaaaaaaaa
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056032 205 + 229942017 tgaccaacatggcaaaacccggcgtctact-----aaaaatacaa--aaattcagataaaagggtgttggcaggcgcctgtaatcccaactacctgggtgggctgaggcaggagaatcacatgaacccaggaggtagaggttgcagtgagccaagattgtgccattgtactccagcctgggcaataagagcaaaactctgtctcaaaaaaaa
i ponAbe2.chr1                 N 0 C 0
s macFas5.chr1                 221904603 207 + 227556264 tggctaacatggtgaaaccctgtctctactaaaaaaaaaatgcaaacaaatt---agctgggcgtggtggccagcgtctgtagtcctagctacttagg-aggctgaggcaggagaatggcctgaacccgggaggcagagcttgcagtgagtcgagatggagccactgcattacagcctgggcgac-agagtgagactccatctcaaaaaaaa
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055470 206 - 220367699 tggctaacatggtgaaaccctgtctctact-aaaaaaaaatgcaaacaaatt---agctgggcgtggtggccggagtctgtagtcctagctacttggg-aggctgaggcaggagaatggcctgaacccgggaggcagagcttgcagtgagtcgagatcgagccactgcattacagcctgggcgac-agagtgagactccatctcaaaaaaaa
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285000 206 + 130588469 tggctaacatggtgaaaccttgtctctact-aaaaaaaaatgcaaacaaatt---agctgggcgtggtggccggcatctgtagtcctagctacttggg-aggctgaggcaggagaatggcctgaacccaggaggcagagcttgcagtgagtcgagattgagccactgcattacagcctgggcaac-agagtgagactccatctcaaaaaaaa
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987182 199 - 155834243 ttaccaacatggcgaaaccccacctttact-----aaaaatacaa--aaatt---agctgggtttggtggtaggcgcctgtaatcccagctacttggg-aggctgaggctggagaatcgcttgaaccctggaggtggaggttgcagtgagccaagatc--cccactgttttctagactgggtgacaagagtaaaactctgtctcaaaaaaaa
i calJac3.chr7                 C 0 I 99

a score=4741.000000
s hg38.chr1_KI270714v1_random      15987  8 +     41717 ---------a-------------aaaaaaa
s panTro4.chr1_GL389124_random     15595 21 +     50403 ---------ataaaattaaatttaaaaaaa
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056237 14 + 229942017 ---------aaaaaaa-------aaaaaaa
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221904810 21 + 227556264 ---------aaaaaaagaaaaaagaaaaaa
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055676 30 - 220367699 aaaaaaaagaaaaaaagaaaaaagaaaaaa
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285206 28 + 130588469 aaaaaaa--gaaaagaaaagaaaaGAAAAA
i chlSab2.chr20                C 0 C 0
e calJac3.chr7                 114987381 99 - 155834243 I

a score=125279.000000
s hg38.chr1_KI270714v1_random      15995 74 +     41717 aggccaggcttgatggctcatgcctataatcccacaactttgggaggccgaggcgggtggatcacttcaggtca
s panTro4.chr1_GL389124_random     15616 74 +     50403 aggccaggcttgatggctcatgcctataatcccacaactttgggaggccgaggcgggtggatcacttgaggtca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056251 74 + 229942017 aggccaggcttggtggctcatgcctataatcccagaactttgggaggccaaggcgggtggatcacttcaggtca
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221904831 74 + 227556264 agaccaggcttggtggctcacgcctataatcccagaactttgggaggctgaggtgggtggatcacttcaggtca
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055706 74 - 220367699 agaccaggcttggtggctcacacctataatcccagaactttgggaggctgaggcgggtggatcacttcaggtca
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285234 74 + 130588469 Agaccaggcttggtggctcacgcctataatcccagaactttgggaggctgaggcgggtggatcacttcaggtca
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987480 72 - 155834243 gggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccaagacgggtggatcac--gaggtca
i calJac3.chr7                 I 99 C 0

a score=315626.000000
s hg38.chr1_KI270714v1_random      16069 140 +     41717 ggagtttgagaccagtttggccaacatggtgaaa-cccatctctactaaaaatac--aaaattagctgggtgcggtggcacatgcttgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggca
s panTro4.chr1_GL389124_random     15690 140 +     50403 ggagtttgagaccagtttggccaacatggtgaaa-cccatctctactaaaaatac--aaaattagctgggtgcagtggcacatgcttgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056325 141 + 229942017 ggagtttgagaccagcttggccaacatggtgaaaccccatctctattaaaaatac--aaaattagctgggtgtggtggcacacacttgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggaggca
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22267854 141 -  28733288 ggagtttgagaccagcttggccaacatggtgaaaccccatctctactaaaaatac--aaaattagctgggtgtggtggcacacgcttgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccaggagaca
i nomLeu3.chr24                N 0 C 0
s macFas5.chr1                 221904905 142 + 227556264 ggagtttgagaccagcttggccaacatggtgaaaccccgactctactaaaaatac-aaaaattagctgggtgtggtggcacatgcttgtaatcccagctactcaggaggctgaggtaggagaattgcttgaacccaggaggtg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055780 142 - 220367699 ggagtttgagaccagcttggccaacatggtgaaaccccgactctactaaaaatac-aaaaattagctgggtgtggtggcacatgcttgtaatcccagccactcaggaggctgaggtaggagaatcgcttgaacccaggaggtg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285308 142 + 130588469 ggagtttgagaccagcttggccaacatggtgaaaccccgtctctactaaaaatac-aaaaattagctgggtgtggtggcacatgcttgtaatcccagctactcaggaggctgaagtaggagaatcgcttgaacccaggaggtg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987552 142 - 155834243 agagattgagaccattctggtcaacatggtgaaaccccgtctctattaaaaatacaaaaaaatagctgggcacggtggcgcgtgcctgtaatcccagctactcgggaggctgaggcaggag-attgcctgaacccaggaggtg
i calJac3.chr7                 C 0 C 0

a score=191464.000000
s hg38.chr1_KI270714v1_random      16209 74 +     41717 gaggttgc-atgagcccagat--cgccactgcactccagactgggtgacaagagtgaaaccccatctcaaaaaaaga
s panTro4.chr1_GL389124_random     15830 74 +     50403 gaggttgc-atgagcccagat--cgccactgcactccagactgggtgacaagagtgaaaccccatctcaaaaaaaga
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056466 74 + 229942017 gaggttgc-ataagcccagat--cgccactgcactccagattgggtgacaagagtgaaaccccatctcaaaaaaaag
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22267995 74 -  28733288 gaggctgc-atgagcccagat--cgccactacactccagattgggtgacaagagtgaaaccccatctcaaaaaaaaa
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023157 70 - 229590362 gaggttgc-atgagccccgat--caccacggcactccagattgggtgacaagagtgaaactccgtcccaaaaa----
i rheMac3.chr1                 N 0 C 0
s macFas5.chr1                 221905047 72 + 227556264 gaggttgc-atgagcccagat--caccacggcactccagattgggtgacaagagtgaaactccgtcccaaaaa--tt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055922 74 - 220367699 gaggttgc-atgagcccagat--caccacggcactccagattgggtgacaagagtgaaactccgtcccaaaaaattt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285450 70 + 130588469 gaggttgc-atgagcccagat--caccacggcactccagattgggtgacgagagtgaaactccgtcccaaaaa----
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987694 73 - 155834243 ggggttgcggtgagccaagatcgcgccattgcactccagcctgggtaacaagagcgaaactccgtctcaaaaa----
i calJac3.chr7                 C 0 C 0

a score=-13672.000000
s hg38.chr1_KI270714v1_random      16283 7 +     41717 -aaaaaaa
s panTro4.chr1_GL389124_random     15904 7 +     50403 -aaaaaaa
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056540 3 + 229942017 -aaa----
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268069 6 -  28733288 -aaaaaa-
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023227 4 - 229590362 ---aaat-
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905119 6 + 227556264 -tttttt-
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211055996 6 - 220367699 -ttcttt-
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285520 6 + 130588469 -aaaaat-
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987767 6 - 155834243 -aaaaaa-
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_14441           18435 7 -     21498 aaaaaaa-
i micMur1.scaffold_14441       N 0 C 0

a score=-2336.000000
s hg38.chr1_KI270714v1_random      16290 2 +     41717 -aa
s panTro4.chr1_GL389124_random     15911 1 +     50403 -a-
i panTro4.chr1_GL389124_random C 0 C 0
s tarSyr2.KE930532v1              124181 1 +    135318 --a
i tarSyr2.KE930532v1           N 0 C 0
s micMur1.scaffold_14441           18442 2 -     21498 aa-
i micMur1.scaffold_14441       C 0 I 465
e rheMac3.chr1                 220023231 0 - 229590362 C
e calJac3.chr7                 114987773 0 - 155834243 C
e macFas5.chr1                 221905125 0 + 227556264 C
e chlSab2.chr20                125285526 0 + 130588469 C
e papAnu2.chr1                 211056002 0 - 220367699 C
e nomLeu3.chr24                 22268075 0 -  28733288 C
e ponAbe2.chr1                 224056543 0 + 229942017 C

a score=349588.000000
s hg38.chr1_KI270714v1_random      16292 130 +     41717 tttttttttttttt---------caga-atgaggtctcactgcattgcccaggctggtctcaaacttctggactcaagtggtccccctgccttggcctctcaaagtgctgggattacatgtgtaagccaccatgcctggc
s panTro4.chr1_GL389124_random     15912 129 +     50403 -ttttttttttttt---------caga-atgaggtctcactgcattgcccaggctggtctcaaacttctggactcaagtggtccccctgccttggcctctcaaagtgctgggattacatgtgtaagccaccatgcctggc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056543 138 + 229942017 -TTTTTttttttttttttttttgcaca-atgaggtctcactgcattgcccaggctggtctcagacttctgggctcaagtggtccccctgccttggcctctcaaagtgctgggattacatgtgtaagccaccatgcctggc
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268075 135 -  28733288 -TTTTGttttttct--ttttttgtaga-atgaggtctcactgcattgctcaggctggtctcagacttctgggctcaagtggt-cccctgccttggcctctcaaagtgctgggattacatgcgtaagccaccatgcctggc
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023231 129 - 229590362 -ttttttttttttc---------caga-atgaggtctcactgcatcgcccaggctggtctcaaactttggggctcaagtggtccccctgccttggcctctcaaagtgctaggattacatgtgtaaaccaccatgcctggc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905125 129 + 227556264 -ttttttttttttc---------caga-atgaggtctcactgcatcgcccaggctggtctcaaactttggggctcaagtggtccccctgccttggcctctcaaagtgctaggattacatgtgtaaaccaccatgcctggc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056002 129 - 220367699 -ttttttttttttc---------caga-atgaggtctcactgcattgcccaggctggtctcaaactttggggctcaagtggtccccctgccttggcctctcaaggtgctgggattacatgtgtaaaccaccatgcctggc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285526 129 + 130588469 -ttttttttttttc---------caga-atgaggtctcactgcattgcccaggctggtctcaaactttggggctcaagtggtccccctgccttggcctctcaaagtgctgggattacatgtgtaaaccaccatgcctggt
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987773  39 - 155834243 -----------------------------------------------------------------------------------------------------aaagtgctgagattacaggtgtaagccacgatgcctggc
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              124182 138 +    135318 attttttttttttt--ttaattgtagagacgcggtctcaccaagttgcccgggctggtcttgaaccagtgggcttaggcaatcctctcacttctgcctcccaaagtgttgagattacaggtgtgaggcaccacacccggc
i tarSyr2.KE930532v1           C 0 I 127
e micMur1.scaffold_14441           18444 465 -     21498 I

a score=105764.000000
s hg38.chr1_KI270714v1_random      16422 47 +     41717 cAaagacttacttttacaggaggagtataaaacatctcattagtaat
s panTro4.chr1_GL389124_random     16041 47 +     50403 cAaagacttacttttacaggaggagtataaaacatctcattagtaat
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056681 47 + 229942017 cgaagacttacttttacaagagaagtataaaacatctcattaataat
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268210 47 -  28733288 TAaagacttacttttacaagaggagtataaaacatctcattaataat
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023360 43 - 229590362 cAAAGACTTA-TTTTACaagaggaatataaaacatctcac---taat
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905254 43 + 227556264 caaagactta-ttttacaagaggaatataaaacatctcac---taat
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056131 43 - 220367699 caaagacTTA-TTTTACAAGAGGAATATAAAACATCTCac---taat
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285655 43 + 130588469 caaagactta-ttttacaagaggaatataaaacatctcac---taag
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987812 38 - 155834243 caaagactta------caagaggggtgtaaaacgtctcaa---taat
i calJac3.chr7                 C 0 C 0
e micMur1.scaffold_14441           18444 465 -     21498 I
e tarSyr2.KE930532v1              124320 127 +    135318 I

a score=233516.000000
s hg38.chr1_KI270714v1_random      16469 78 +     41717 tttcat-aattg---attatgtgtcgaaataatatttttgatattttgtgtcaagtaacac--tactaaaattaagctcaccta
s panTro4.chr1_GL389124_random     16088 78 +     50403 tttcat-aattg---attatgtgtcgaaataatatttttgatattttgtgtcaaataaaac--tactaaaattaagctcaccta
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056728 80 + 229942017 tttcat-aattg---attatgtgtcaaaataatatttttgatattttgtgccaaataaaacagtactaaaattaagctcaccta
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268257 80 -  28733288 tttcat-aattg---attatgtgtcgaaataatatttttgatattttgtgccaaataaaacagtactaaaattaagctcaccta
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023403 79 - 229590362 tttcat--attg---attatgtgtcaaaataatatttttgatattttgtgtcaaataaaacagtactaaaattaagctcaccta
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905297 79 + 227556264 tttcat--attg---attatgtgtcaaaataatattgttgatattttgtgtcaaataaaacagtactaaaattaagctcaccta
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056174 79 - 220367699 tttcat--attg---attatgtgtcaaaataatatttttgatattttgtgtcAAATAAAACAGTACTAAAATTAAGCTCACCTA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285698 79 + 130588469 tttcat--attg---attatgtgtcaaaataatatttttgatattttgtgtcaaataaaacagtactaaaattaagctcaccta
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987850 76 - 155834243 tttcat--att----attatatgttgaaataaaagttttgatattttgtgttagataaaac--taagaaaactaagctcaccta
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28600608 75 -  88915250 tttcataaattttacattatctattgaagtgatact-tcgatatattgagttaaataagat--------acacatgttcaccta
i canFam3.chr5                 N 0 C 0
e micMur1.scaffold_14441           18444 465 -     21498 I
e tarSyr2.KE930532v1              124320 127 +    135318 I

a score=3580.000000
s hg38.chr1_KI270714v1_random      16547 2 +     41717 ta
s panTro4.chr1_GL389124_random     16166 2 +     50403 ta
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056808 2 + 229942017 ta
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268337 2 -  28733288 ta
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023482 2 - 229590362 ta
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905376 2 + 227556264 ta
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056253 2 - 220367699 TA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285777 2 + 130588469 ta
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987926 2 - 155834243 ta
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              124447 1 +    135318 c-
i tarSyr2.KE930532v1           I 127 I 225
s canFam3.chr5                  28600683 2 -  88915250 ta
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18444 465 -     21498 I

a score=563041.000000
s hg38.chr1_KI270714v1_random      16549 174 +     41717 tccttctacattttcactgtggctactagaaaattttaaattacatctgtggc-tctcattacatttctattggacagcactgGGCTGGGTGAGATGACTAGGGGCAGAAAGTACATTCTGAGGGCCAGACAATCAAGGTGATTGATACTGGGGTTAGGTTAACTGAAGGGTAGA
s panTro4.chr1_GL389124_random     16168 174 +     50403 tccttctacattttcactgtggctactagaaaattttaaattacatctgtggc-tctcattatatttctattggacagcactgGGCTGGGTGAGATTACTAGGGGCAGAAAGTACATTCTGAGGGCCAGACAATCAAGGTGATTGATACTGGGGTTAGGTTAACTGAAGGGTAGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056810 174 + 229942017 tccttctagattttcactgtggctactggaaaattttaaattacatctgtggc-tctcattacatttctatcggacagcactgGGCTGGGTGAGATTACTAGGGGCAGAAAGCACGTTCTGAGGACCAGACAATCAAGGTGATTGATAGTGGGGTTAGGTTCACTGAAGGGTAGA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268339 175 -  28733288 tccttctacattttcactgtggctactggaaaattttaaattacatctgtggcttttcattaaatttctactggacagcactgGGCTGGGTGAGATTAGTAGGGGCAGAAAGTACGTTCTGAGGGCCAGACAATCAAGGTGATTGATAGTGGGGTTAGGTTAACTGAAGGGTAGA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023484 170 - 229590362 tccttctacattttcactgtggctactagaaaattttaaattgcatctgtggc-tcacattatatttctactggacagcactgGGCTGGGTGAGATTACTAGGGGCAGAAAATACATTCTGAGGGCCAG----TCAAGGTGATTGATACTGGGGTTAGGTTAATTGAAGGGTAGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905378 170 + 227556264 tccttctacattttcactgtggctactagaaaattttaaattgcatctgtggc-tcacattatatttctactggacagcactgGGCTGGGTGAGATTACTAGGGGCAGAAAATACATTCTGAGGGCCAG----TCAAGGTGATTGATACTGGGGTTAGGTTAATTGAAGGGTAGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056255 170 - 220367699 TCCTTCTACATTTTCactgtggctactagaaaattttaaattgcatctgtggc-tcacattatatttctactggACAGCACTGGGCTGGGTGAGATTACTAGGGGCAGAAAATACATTCTGAGGGCCAG----TCAAGGTGATTGATACTGGGGTTAGGTTAATTGAAGGGTAGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285779 170 + 130588469 tccttctacattttcactgtggctactagaaaattttaaattgcatctgtggc-tcacattatatttctactggacagcactgGGCTGGGTGAGATTACTAGGGGCAGAAAATACATTCTGAGGGCCAA----TCAAGGTGATTGATACTGGGGTTAGGTTAATTGAAGGGTAGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114987928 163 - 155834243 ttct-----------actgtggctaatagaaaattttaaattacatatgtgac-tcacgttgtatttctatcggacagcactgGGCTGGGTGAGATTACTAGAGGCAGAAACTACGTTCTGAGCAGCAGACAATCAAGGTGATTGATACTAGGGTTAGGTTAACTGATGGATAGA
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28600685 158 -  88915250 tctttttactttttcaaagtggctacaagagaatttaaaattacata-gtggc-tcgcattatatttctgt----CTGCACTGGGCT-----AGATTCCTGGGGGCAGGAACTATGTTTTGAGGGACAG---CGCAAGGTTATTGACACTGAGGTTGGGTTAACCAAAGGTT---
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18444 465 -     21498 I
e tarSyr2.KE930532v1              124448 225 +    135318 I

a score=213828.000000
s hg38.chr1_KI270714v1_random      16723 69 +     41717 AAAGGCCAGGTTAATAGGAGGCAGGGACTGAG-TAACCGGGAACAAAGTTATCAGAGCATGAGAGAGAGA
s panTro4.chr1_GL389124_random     16342 69 +     50403 AAAGGCCAGGTTAATAGGAGGCAGGGACTGAG-AAACCGGGAACAAAGTTATCAGAGCATGAGAGAGAGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224056984 69 + 229942017 AAAGAGCAGGTTAATAGGAGGCAGGGACTGAG-TAACCGGGAACAAAGTTCTCAGAGCATGAGAGAGAGA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268514 69 -  28733288 AAAGGCCAGGTTAATAGGAGGCAGGGACTGAG-TAACCGGGAACAAAGTTATCAGAGCATGAGAGAGAGA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023654 69 - 229590362 AAAGGCCATGCTAATAGGAGGCAGGGACTGAA-TAACTGGGAGCAAAGTTATCAGAGCATGAGAGAGAGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905548 69 + 227556264 AAAGGCCATGCTAATAGGAGGCAGGGACTGAA-TAACTGGGAGCAAAGTTATCAGAGCATGAGAGAGAGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056425 69 - 220367699 AAAGGCCATGCTAATAGGAGGCAGGGACTGAA-TAACTGGGAGCAAAGTTATCAGAGCATGAGAGAGAGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125285949 70 + 130588469 AAAGGCCATGCTAATAGGAGGCAGGGACTGAATTAACTGGGAGCAAAGTTATCAGAGCATGAGAGAGAGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988091 69 - 155834243 AAAAACCAGGTTAGTAGGAGGCAGGGACTGAG-TAACCAGGAGCAAAGTTATCAGAGCACGAGAGAGAGA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152123386 65 + 156508116 aaatgctaggctact--gagatggggtctagg-TAACT--TAAGAATGTAATCAGAGCGTCAGAGCCAGG
i mm10.chr4                    N 0 C 0
s canFam3.chr5                  28600843 51 -  88915250 ----GTTAGG---GCATAAGATATAGACTTTG-GGACAGGGGC-----TTATTGGGG-----GAGAGAG-
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18444 465 -     21498 I
e tarSyr2.KE930532v1              124448 225 +    135318 I

a score=27870.000000
s hg38.chr1_KI270714v1_random      16792 7 +     41717 TTCTGGG
s panTro4.chr1_GL389124_random     16411 7 +     50403 TTCTGGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057053 7 + 229942017 TTCTGGG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268583 7 -  28733288 TTCTGCG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023723 7 - 229590362 TTCTGGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905617 7 + 227556264 TTCTGGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056494 7 - 220367699 TTCTGGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286019 7 + 130588469 TTCTGGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988160 7 - 155834243 TTCTGGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_14441           18909 7 -     21498 TATTGGG
i micMur1.scaffold_14441       I 465 C 0
s mm10.chr4                    152123451 7 + 156508116 CTTTGAG
i mm10.chr4                    C 0 C 0
e canFam3.chr5                  28600894 0 -  88915250 C
e tarSyr2.KE930532v1              124448 225 +    135318 I

a score=5159.000000
s hg38.chr1_KI270714v1_random      16799 1 +     41717 G
s panTro4.chr1_GL389124_random     16418 1 +     50403 G
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057060 1 + 229942017 G
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268590 1 -  28733288 G
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023730 1 - 229590362 G
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905624 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056501 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286026 1 + 130588469 G
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988167 1 - 155834243 G
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              124673 1 +    135318 A
i tarSyr2.KE930532v1           I 225 C 0
s micMur1.scaffold_14441           18916 1 -     21498 G
i micMur1.scaffold_14441       C 0 C 0
s mm10.chr4                    152123458 1 + 156508116 G
i mm10.chr4                    C 0 C 0
e canFam3.chr5                  28600894 0 -  88915250 C

a score=47161.000000
s hg38.chr1_KI270714v1_random      16800 14 +     41717 GTCAGCCG---------------TCTGGG-
s panTro4.chr1_GL389124_random     16419 14 +     50403 GTCAGCCG---------------TCTGGG-
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222974513 14 - 229507203 GACAGCGG---------------TCTGGG-
i gorGor3.chr1                 N 0 C 0
s ponAbe2.chr1                 224057061 14 + 229942017 GACAGCGG---------------TCTGGG-
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268591 14 -  28733288 GACAGCGG---------------TCTGGG-
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023731 14 - 229590362 GACAGCGG---------------GCTGGG-
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905625 14 + 227556264 GACAGCGG---------------GCTGGG-
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056502 14 - 220367699 GACAGCGG---------------GCTGGG-
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286027 14 + 130588469 GACAGCGG---------------GCTGGG-
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01212965v1       193 14 +       810 GACAGCAG---------------GCTGGG-
i nasLar1.chrUn_JMHX01212965v1 N 0 C 0
s calJac3.chr7                 114988168 13 - 155834243 -ACAGGGG---------------TCGGGA-
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              124674 29 +    135318 GACAGGGACTAAATTCGTGGGGTTCAGGG-
i tarSyr2.KE930532v1           C 0 I 68
s micMur1.scaffold_14441           18917 14 -     21498 GACAGGGG---------------TCTGGT-
i micMur1.scaffold_14441       C 0 I 58
s mm10.chr4                    152123459 29 + 156508116 GACAGGCGCTAAATAATTAAGGGTGTGTG-
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28600894  8 -  88915250 -------G---------------TCTGGTG
i canFam3.chr5                 C 0 C 0

a score=1480.000000
s hg38.chr1_KI270714v1_random      16814 1 +     41717 A
s panTro4.chr1_GL389124_random     16433 1 +     50403 A
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222974527 1 - 229507203 A
i gorGor3.chr1                 C 0 I 3690
s ponAbe2.chr1                 224057075 1 + 229942017 A
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268605 1 -  28733288 A
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023745 1 - 229590362 G
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905639 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056516 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286041 1 + 130588469 G
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01212965v1       207 1 +       810 G
i nasLar1.chrUn_JMHX01212965v1 C 0 N 0
s canFam3.chr5                  28600902 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152123488 1 + 156508116 I
e micMur1.scaffold_14441           18931 58 -     21498 I
e tarSyr2.KE930532v1              124703 68 +    135318 I
e calJac3.chr7                 114988181 0 - 155834243 C

a score=176661.000000
s hg38.chr1_KI270714v1_random      16815 59 +     41717 TATTATAGGGAGGAAGGAGGCTGTGCTACAAGGGCCA-AGAGACAGGAGGATGCACTCAA
s panTro4.chr1_GL389124_random     16434 59 +     50403 TATTATAGGGAGGAAGGAGACTGTGCTACAAGGGCCA-AGAGACAGGAGGATGCACTCAA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057076 59 + 229942017 TATTATAGGGAGGAAGGAGGCTGTACTACAAGGAGCA-AGAGACAGGAGGATGTACTCAA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268606 59 -  28733288 CATTATAGCGAGGAAAGAGGCTGTGCTACAAGGGCCA-AGAGATGGGAGGATGCACTCAA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023746 58 - 229590362 CATTATAAGGAGGAAAGAGGCTTTG-TACAAGGACTA-AGAGACAGGAGGATGCACTCAA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905640 58 + 227556264 CATTATAAGGAGGAAAGAGGCTTTG-TACAAGGACTA-AGAGACAGGAGGATGCACTCAA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056517 58 - 220367699 CATTATAAGGAGGAAAGAGGCTTTG-TACAAGGACTA-AGAGACAGGAGGATGCACTCAA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286042 58 + 130588469 CATTATAAGGAGGAAAGAGGCTTTG-TACAAGGACTA-AGAGACAGGAGGATGCACTCAA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988181 59 - 155834243 CATTGCAGGGAGGAAAGAGGCTGTGCTACAAGGGCTG-AGGGCTAGGAGGATGCGCTCAA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152123489 49 + 156508116 CATTATTGGGAGCTGAAAGGTCATGGTAGCAGGTCTG-AAGTAATGGAGT----------
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28600903 58 -  88915250 CATCATTGGAAGCAGAGAGGTTGTGTTACA--GACTAGAGTGACAAGGAGATGTGCTCAA
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18931 58 -     21498 I
e tarSyr2.KE930532v1              124703 68 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=7800.000000
s hg38.chr1_KI270714v1_random      16874 1 +     41717 G
s panTro4.chr1_GL389124_random     16493 1 +     50403 G
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057135 1 + 229942017 G
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268665 1 -  28733288 G
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023804 1 - 229590362 G
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905698 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056575 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286100 1 + 130588469 G
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988240 1 - 155834243 G
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              124771 1 +    135318 G
i tarSyr2.KE930532v1           I 68 I 792
s micMur1.scaffold_14441           18989 1 -     21498 G
i micMur1.scaffold_14441       I 58 I 823
s mm10.chr4                    152123538 1 + 156508116 G
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28600961 1 -  88915250 G
i canFam3.chr5                 C 0 I 1
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=2120646.000000
s hg38.chr1_KI270714v1_random      16875 580 +     41717 TTGGCCTGGATGAA-GGGACGACCCTCTGCGACTTGGGTGGGGGTAAGGGTGGCAGGCTGGGGCCAGCCCTGCACTCACCGCTTCTGCTTCCTAGAAGG----AGAAACAGTGTCACTTGGTACCTCCACCTCAGGGGCGCAGTCAAGACACGCTGCCAGGCC----AGCCTCTGCCTGA-CCGCCGGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCACCTCCAGGCGGGCATGCTGGCCAGCCGGGCCTCCTCCT---CCTCCTGAAACACAACCACAAAGCTTCAGAGCCTGCAGGGGCTGGGA-------GATAGGGGGC----------ACCCTCAACCT--GGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGTGACCCTTTGGATGCATTTCTGTGGGACAAGTGGATGGAGGTGCCTGGT--CACA-CCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGTCCTACAGGAGGCACCAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAGAA----AAAGTAGCCGGGACCCAGAGGTCCTGAGCCTGATTCCCCACAGGGGCAGGTGGCCA-ATGGCCACAGGTCCAAG
s panTro4.chr1_GL389124_random     16494 574 +     50403 TTGGCCTGGATGAA-GGGACGACCCTCTGCGACTTGGGTGGGGGTAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTTCCTAGAAGG----AGAAACAGTGTCACTTGGTACCTCCACTTCAGGGGCGCAGTCAAAACACGCTGCCAGGCC----AGCCTCTGCCTGA-CCGCCGGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGCCGGGCCTCCTCCT---------GAAACACAACCACAAAGCTTCAGAGCCTGCAGGGGCTGGGA-------GATAGGGGGC----------ACCCTCAACCT--GGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGTGACCCTTTTGATGCATTTCTGTGGGTCAAGTGGATGGAGGTGCCTGGT--CACA-CCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGGCCTACAGGAGGCACCAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAGAA----AAAGTAGCCGGGACCCAGAGGTCCTGAGCCTGATTCCCCACAGGGGCAGGTGGCCA-ATGGCCACAGGTCCAAG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057136 590 + 229942017 TTGGCCTGGATGAA-GGGACGACCCTCTGCAACTTGGGTGGGGATAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTCCCTGGAAGGAAAAAGAGACAGTGTTACTTGGTACCTCCACCTCAGGGACGCAGTCAAGACACCCTGCCAGGCC----AGCCTCTGCCTGACCCCCCAGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGCCGGGCCTCCTCCTCCTCCTCCTGAAACACAACCACAAAACTTCAGGGCCCGCGGGGGCTGGGA-------GATAGGGGGC----------ACCCTCAGCCT--CGGGACCTGAAAGAGTCAGGG----------------------TCACAGGAAGACATCCTTTTGATGCACTTCTGTGGGACAAGTGGATGGAGGTGCCTGGTCACACA-CCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGTCCTACAGGAGGCACCAGAGAGATCAAAGCTGA---GTGGGACAGAAGCAGAGAA----CAAGTAGCTGGGACCCAGAGGTCCTGAGCCTGATTCCCCACAGAGGCAGGTGGCCA-ATGGCCACAGGCCCAAG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22268666 588 -  28733288 TTGGCCTGGATGAAGGGGACCACCCTCTGCGACTTGGGTGGGGATAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTCCCTGGAAGGAAAAAGAGACAGTGTCACTTGGTACCTCCACCTCACGGACGCAGTCAAGACACCCTGCCAGGCC----AGCCTCTGCCTGA-CCCCCAGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGCCGGGcctcctcctcctcctcctGAAACACAACCACAAAGCTTCAGGGCCTGCAGGGGCTGGGA-------GATATGGGGC----------ACCCTCAACCT--CGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGACATCCTTTTGATGCACTTCTGTGGGACAAGTGGATTGAGGTGCCTGGT--CACA-CCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGTCCTACAGGAGGCACCAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAAAA----CAAGTAGCTGGGACCCAGAGGTCCTGAGCCTAATTCCCCACAGAGGCAGGTGGCCA-ATGGCCACAGGCCCAAG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220023805 584 - 229590362 TTGGCCTGGATGAA-GGGATGACCCTCTGCGACCTGGGTGGGGGTAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTCCCTGGAAGG--AAAAAGAGAGTGTCACTTGGTCCCTCCACCTCAGGGACGCAGTCAAGACACCCCGCCAGGCC----AGTCTCTGCCTGA-CCCCCAGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGCCGGGCCTCCTCCTCCTCCTCCTGAAACACAACCACAAAGCTTCAGGGCCTGCAGGGGCTGGGA-------GATAGGGGGT----------ACCCTCAACCT--GGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGATACCCTTTTGATGAACTTCTGTGGGACAAGTGGAT-GAAGTGCCTGGT--CACA-GCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGTCCTACAGGAGGCACTAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAGAA----TAAGTAGCTGGGACCCAGATGTCCTGAGCGTGATTCCCCACAGGGGCAGGTGGCCA-ATGGCCACAGGCCCAAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221905699 584 + 227556264 TTGGCCTGGATGAA-GGGATGACCCTCTGCGACCTGGGTGGGGGTAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTCCCTGGAAGG--AAAAAGAGAGTGTCACTTGGTCCCTCCACCTCAGGGACGAAGTCAAGACACCCCGCCAGGCC----AGCCTCTGCCTGA-CCCCCAGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGCCGGGcctcctcctcctcctcctGAAACACAACCACAAAGCTTCAGGGCCTGCAGGGGCTGGGA-------GATAGGGGGT----------ACCCTCAACCT--GGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGATACCCTTTTGATGAACTTCTGTGGGACAAGTGGAT-GAAGTGCCTGGT--CACA-GCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGTCCTACAGGAGGCACTAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAGAA----TAAGTAGCTGGGACCCAGATGTCCTGAGCGTGATTCCCCACAGGGGCAGGTGGCCA-ATGGCCACAGGCCCAAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211056576 581 - 220367699 TTGGCCTGGATGAA-GGGATGACCCTCTGCGACCTGGGTGGGGGTAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTCcctggaagg--aaaaagagagtgtCACTTGGTCCCTCCACCTCAGGGACGCAGTCAAGACACCCCGCCAGGCC----AGCCTCTGCCTGA-CCCCCAGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCAGGCATGCTGGCCAGCcgggcctcctcctcctcctcctgaaaCACAACCACAAAGCTTCAGGGCCTGCAGGGGCTGGGA-------GATAGGGGGT----------ACCCTCAACCT--GGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGATACCCTTTTGATGAACTTCTGTGGGACAA---GGT-GAAGTGCCTGGT--CACA-GCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTATCCTACAGGAGGCACTAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAGaa----taagtagctgggacccagATGTCCTGAGCGTGATTCCCCACAGGGGCAGGTGGCCA-ATGGCCACAGGCCCAAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286101 584 + 130588469 TTGGCCTGGATGAA-GGGATGACCCTCTGCGACCTGGGTGGGGGTAAGGGTGGCAGGTTGGGGCCAGCCCTGCACTCACCGCTTCTGCTCCCTGGAAGG--AAAAAGAGAGTGTCACTTGGTCCCTCCACCTCAGGGACGCAGTCAAGACACCCTGCCAGGCC----AGTCTCTGCCTGA-CCCCCAGCTCACCTCTCTTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGCCGGGcctcctcctcctcctcctGAAACACAACCACAAAGCTTCAGGGCCTGCAGGGGCTGGGA-------GATAGGGGGT----------ACCCTCAACCT--GGGGACCTGAAGGAGTCAGGG----------------------TCACAGGAAGATACCCTTTTGATGAACTTCTGTGGGACAAGTGGAT-GAAGTGCCTAGT--CACA-GCCCCTCAGAGCTGG-CCTCCTTTCCCCTAGTAAC-CCAGACCCTTGTGTCCTACAGGAGGCACTAGAGAGATCAGAGCTGA---GTGGGACAGAAGCAGAGAA----TAAGTAGCTGGGACCCAGAGGTCCTGAGCGTGATTCGCCACAGGGGCAGGTGGCCA-ATGGCCACAGGCCCAAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988241 585 - 155834243 TCAGTCTGGATGAA-GGGACGACCCTCTGCGATGTGGGTGGGGCTAAGGGTGGCAGGTTGATGCCAGCCCTGCACTCACCGTTTCTGCTCCCTGGAAGAAAAAAGAGACAGTGTCACTAGGTACCTCCACCTCAGGGATGCAGTCAGGACCCCCTGCCAGGCC----AGCCTCTGCTTGA-CCCCCAGCTCACCTCTCCTCTTCCAGCTTCTTCCGCAGGAGGTCCCGCCTCCAGGCGGGCATGCTGGCCAGTCGGGCCTCCTCCTCCTCCTCCTGAAACACAACCACAAAGCTTCAGGGCCTGCAGGGGCTGCGA-------GATAGGGGGC----------ACCCTCAACCT--GGGGACCTGAAGGAGGCAGGG----------------------TCACAGGAAGAGACCCTTTTGAAGCACTTCTGTGGGGCAGGTGGATGGAGGTGCCTGGT--CACAGCCCCCTCAGAGCCGG-CCTCCTCTCCCCTAGTAAC-CCAGACCCTCATGTCCAACAGGGGGCGCCAGAGAGATCAGAGCTGA---GTGGGACAGAAATAGAG------TAAGTAGCTGGAACCCAGAGGTCCAGAGCCTGATTCCGAAC--GGGCAGGTGGACAGATGGCCCCAGGCCCAGG
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152123539 571 + 156508116 GTTGACGAAGCAAG-GGGACAAACCTCCGGGGC-TGGGCGTGGGAAGAGGCGGCAGGTTTGGGCCAGGACCATACTTACCGCTTCTGCTCCCTGGAGAGAGAAAGAGACAGTGTTAGATGGCCTCACACCCTCCGAGAC--AGTCAAGACAGGATTCCAAG-C----AGTCT---------CCTCCA-CTCACCTCTCCTCCTCCAGCTTCTTCCGAAGAATGTCTCGTCTCCAGGCAGGCAGGCTGGCGAGCCGGGCCTCCTCCTCTTCCTCCTAAAACATGACCAC--AGCTTCAGGACCAGCTTGGCCCGAGATTCCCAGGTTGGAAGGCCTGCA-----AACCCAACCCA--GGGGATGTGCAGAATTCAGGGACAGCAGAACATAGATGTCTTTGCAAGGAAAGACCCCTTTTTAATGGCCTCCTACGGTGCAA------------TCTTGGT--GACA-GACTATGTAGGCGGGACCTCCTGCTCCCCAGTGAC-CCTAACCAGTTTG--CTACAGGTGGAGCCACATAGATCAGAG---------GAGGTAAAAGCGAAGACAGAA-AAGTAGCTGGGTCC---------------TGATTTCCCACA-AAGCAGGTGCCCAGATGGCTCCACGTT----
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28600963 563 -  88915250 TGGGGCTGGATGAA-GAGGCAAAAGACTAAGG---AGGTTTGGGGAGGGGTGACAGGTCTGGCCCAGTCCCA-ACTCACCGCCTCTGCTCCCTAGAAGGAAAAAGAGACAGCATTATTTGGTGCCACCACAGCAGACACAAGATCAAGACATCCTACCAGGCCCTGAAGCTTCTGAT----TACCCAACTCACCTCTCCTCTTCTAGCTTCTTCCGCAGGAGGTCTCGCCTCCATGCAGGCATGCTGGCCAGCCGGGCTTCCTCCTCTTCCTCCTGAAACACAATTGTTGAGCTTTAGGACCAGCATGGGCTAGGA-------GGTAGGGGGCCAGAAGGGGCACCCCCAACCCCGGGAGACCTGCAAGAGTCAGGG----------------------ACAATGGGATACA-------GATGTTCTTTCACAGGGCAAATCGATAAAGTTGCCTGGC--CATGGTCTCCTTAAAG--GG-C--TCTGCCCCCTTGTAACTCCAGCCTCCTGTGTCCTAGAGGGGGCGCCAGAGAGGTCAGACCTAAGGTGTAGGAAAGGACCAGAGAA----TGAGC----------------------------TTCTCCACTGGGGCAGGATGACAGATGGCCCCAGGCCCCCA
i canFam3.chr5                 I 1 C 0
e micMur1.scaffold_14441           18990 823 -     21498 I
e tarSyr2.KE930532v1              124772 792 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=7334.000000
s hg38.chr1_KI270714v1_random         17455 2 +     41717 AT
s panTro4.chr1_GL389124_random        17068 2 +     50403 AT
i panTro4.chr1_GL389124_random    C 0 C 0
s ponAbe2.chr1                    224057726 2 + 229942017 AC
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24                    22269254 2 -  28733288 AC
i nomLeu3.chr24                   C 0 C 0
s rheMac3.chr1                    220024389 2 - 229590362 AC
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    221906283 2 + 227556264 AC
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    211057157 2 - 220367699 AC
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20                   125286685 2 + 130588469 AC
i chlSab2.chr20                   C 0 C 0
s calJac3.chr7                    114988826 2 - 155834243 AC
i calJac3.chr7                    C 0 C 0
s tupBel1.scaffold_142430.1-49151     13766 2 -     49151 AT
i tupBel1.scaffold_142430.1-49151 N 0 I 22
s canFam3.chr5                     28601526 2 -  88915250 AC
i canFam3.chr5                    C 0 C 0
e mm10.chr4                       152124110 0 + 156508116 C
e micMur1.scaffold_14441              18990 823 -     21498 I
e tarSyr2.KE930532v1                 124772 792 +    135318 I
e gorGor3.chr1                    222974528 3690 - 229507203 I

a score=86288.000000
s hg38.chr1_KI270714v1_random         17457 22 +     41717 -----CTCTGGGCAGACGCAGATGCGG
s panTro4.chr1_GL389124_random        17070 22 +     50403 -----CTCTGGGCAGACGCAGATGCGG
i panTro4.chr1_GL389124_random    C 0 C 0
s ponAbe2.chr1                    224057728 22 + 229942017 -----CTCTGGGCAGACGCAGATGCGA
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24                    22269256 22 -  28733288 -----CTCTGGGCAGACGCAGATGCGG
i nomLeu3.chr24                   C 0 C 0
s rheMac3.chr1                    220024391 22 - 229590362 -----CTCTGGGCAGATGCAGATGCGG
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    221906285 22 + 227556264 -----CTCTGGGCAGATGCAGATGCGG
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    211057159 22 - 220367699 -----CTCTGGGCAGATGCAGATGTGG
i papAnu2.chr1                    C 0 C 0
s chlSab2.chr20                   125286687 22 + 130588469 -----CTCTGGGCAGATGCAGATGTGG
i chlSab2.chr20                   C 0 C 0
s calJac3.chr7                    114988828 22 - 155834243 -----CTCTGGGCAGACGCAGATGTGG
i calJac3.chr7                    C 0 C 0
s mm10.chr4                       152124110 21 + 156508116 ------TCTGGGCAGATGTAGGCTTGG
i mm10.chr4                       C 0 C 0
s canFam3.chr5                     28601528 27 -  88915250 CCAGACTCTGGGCAGAAACATCCTTGG
i canFam3.chr5                    C 0 C 0
e micMur1.scaffold_14441              18990 823 -     21498 I
e tupBel1.scaffold_142430.1-49151     13768 22 -     49151 I
e tarSyr2.KE930532v1                 124772 792 +    135318 I
e gorGor3.chr1                    222974528 3690 - 229507203 I

a score=5159.000000
s hg38.chr1_KI270714v1_random         17479 1 +     41717 G
s panTro4.chr1_GL389124_random        17092 1 +     50403 G
i panTro4.chr1_GL389124_random    C 0 C 0
s ponAbe2.chr1                    224057750 1 + 229942017 G
i ponAbe2.chr1                    C 0 C 0
s nomLeu3.chr24                    22269278 1 -  28733288 G
i nomLeu3.chr24                   C 0 C 0
s rheMac3.chr1                    220024413 1 - 229590362 G
i rheMac3.chr1                    C 0 C 0
s macFas5.chr1                    221906307 1 + 227556264 G
i macFas5.chr1                    C 0 C 0
s papAnu2.chr1                    211057181 1 - 220367699 G
i papAnu2.chr1                    C 0 I 1
s chlSab2.chr20                   125286709 1 + 130588469 G
i chlSab2.chr20                   C 0 C 0
s calJac3.chr7                    114988850 1 - 155834243 G
i calJac3.chr7                    C 0 C 0
s tupBel1.scaffold_142430.1-49151     13790 1 -     49151 G
i tupBel1.scaffold_142430.1-49151 I 22 N 0
s mm10.chr4                       152124131 1 + 156508116 A
i mm10.chr4                       C 0 C 0
s canFam3.chr5                     28601555 1 -  88915250 G
i canFam3.chr5                    C 0 C 0
e micMur1.scaffold_14441              18990 823 -     21498 I
e tarSyr2.KE930532v1                 124772 792 +    135318 I
e gorGor3.chr1                    222974528 3690 - 229507203 I

a score=516337.000000
s hg38.chr1_KI270714v1_random      17480 154 +     41717 CCCCCACCCAGCCTCTTGGCTCAGGGAGATTCAGGCTGCCCCTGGCTCCCCTGAGAAGGACCTTC-AGCCCATGGTTGCCCTCTTCCCAA-CAGAGTGGATACGTGCTCTACAATCGTGGGGCTGCAATGACAT--CAGGGGCAGGTG---TGGTGTCCAA
s panTro4.chr1_GL389124_random     17093 154 +     50403 CCCCCACCCAGCCTCTTGGCTCAGGGAGATTCAGGCTGCCCCTGGCTCCCCTGAGAAGGACCTTC-AGCCCATGGTTGCCCTCTTCCCAA-CAGAGTGGATACGTGCTCTACAATCATGGGGCTGCAATGACAT--CAGGGGCAGGTG---TGGTGTCCAA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057751 154 + 229942017 CCCCCACCCAGCCTCTTGGCTCAGGGAGACTCAGGCTGCCCCTGGCTCCCCTGCGAAGGGCCTTC-AGCCCATGGTTGCCCTCTTCCCAA-TAGAGTGGATACGGGCTCTACAATCGTGGGGCTACAATGACAT--CAGGGGCAGGTG---TGGTGTCCAA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269279 154 -  28733288 CCCCCACCCAGCCTCTTGGCTCAGGGAGACTCAGGCTGCCCCTGGCTCCCCTGCGAAGGACCTTC-AGCCCATGGTTGCCCTCTTCCCAA-TAGAGTGGATACGTGCTCTACAATCGTGGGGCTGCAATGACAT--CAGAGGCAGGTG---TGGTGTCCAA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220024414 154 - 229590362 CCCCCGCCCAGCCTCTTGGCTCAGGGAGACTCCGGCTGCCCCTGGCTCCCCTGCGAAGGACCTTC-AGCCCATGGTTGCCCTCTTCCCAC-AAGAGTGGACATGTGCCGTACATTTGTGGGGCTGCAATGACAT--CGGGGGCAGGTG---TGGTGGCCAA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906308 154 + 227556264 CCCCCGCCCAGCCTCTTGGCTCAGGGAGACTCCGGCTGCCCCTGGCTCCCCTGCGAAGGACCTTC-AGCCCATGGTTGCCCTCTTCCCAC-AAGAGTGGACATGTGCCGTACATTTGTGGGGCTGCAATGACAT--CGGGGGCAGGTG---TGGTGGCCAA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057183 154 - 220367699 CCCCCGCCCAGCCTCTTGGCTCAGGGAGACTCCGGCTGCCCCTGGCTCCCCTGCGAAGGACCTTC-AGCCCATGGTTGCCCTCTTCCCAC-AAGAGTGGACATGTGCTGTACATTTGTGGGGCTGCAATGACAT--cgggggcaggtg---tggtggccaa
i papAnu2.chr1                 I 1 C 0
s chlSab2.chr20                125286710 154 + 130588469 CCCCCACCCAGCCTCTTGGCTCAGGGAGACTCGGGCTGCCCCTGGCTCCCCTGCGAAGGACGTTC-GGCCCATGGTTGCCCTCTTCCCAA-AAGAGTGGACATGTGCTGTACATTCGTGGGGCTGCAGTGACAT--CGGGGGCAGGTG---TAGTGGCCAA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114988851 151 - 155834243 CCCCCA-CCACCCTCTTGGCTCAGGGAGACTCAGGCTGCCCATGGCTCCCCTGCAAAGGACCTT---GCTCATGCTTGCCCTCTTCTCAA-TGGAGTGAACACCTGCTCTACAATCATGGGGCTGCAATGACAT--CGGGGGCAGGTG---TGGTGTCCAA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152124132 144 + 156508116 ---CCACATATGTGCTCAGCTCAGGAAGAC-CAGGCTGCCTCTGTCTCCCCTGTGGGGGACCCACTGACCCACGCTTGCTCGCTTCTTAG-TGGCACTGGGATGT--TTCACAACTATGAGGCTATAATGACAT---GGGGAGAGGGG---TAG----CAA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28601556 137 -  88915250 CCCCCACA---------GGCTCAAAGTGGC---------------CTCCACTGGGAAGAATCTTCTGGGCCATGTGTGTCCTGTTCCCAAGTGGAGTAGACACTACCTCTACCACTGTGTGGCTGCATTGACTTGGCAGGAGCAGGGGAGCGGGCATCCAA
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18990 823 -     21498 I
e tarSyr2.KE930532v1              124772 792 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=-2201.000000
s hg38.chr1_KI270714v1_random      17634 3 +     41717 CAT
s panTro4.chr1_GL389124_random     17247 3 +     50403 CAT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057905 3 + 229942017 CGT
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269433 3 -  28733288 CGT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220024568 3 - 229590362 TGT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906462 3 + 227556264 TGT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057337 3 - 220367699 TGT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286864 3 + 130588469 CGT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989002 3 - 155834243 TGT
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              125564 1 +    135318 C--
i tarSyr2.KE930532v1           I 792 I 2431
s mm10.chr4                    152124276 2 + 156508116 CA-
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28601693 3 -  88915250 CAC
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18990 823 -     21498 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=141669.000000
s hg38.chr1_KI270714v1_random      17637 35 +     41717 AGGCAGTTTACAGCAAAGAGTTTTATTTCCTGAAT
s panTro4.chr1_GL389124_random     17250 35 +     50403 AGGCAGTTTACAGCAAAGAGTTTTATTTCCTGAAT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057908 35 + 229942017 AGGCAGTTTACAGCAAAGAGTTTTATTTCCTGAAT
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269436 35 -  28733288 AGGCAGTTTACAGCAAAGAGTTTTATTTCCTGAAT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220024571 35 - 229590362 AGGCAGTTTACAGCAAAGAGTTTTATTTATCGAAT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906465 35 + 227556264 AGGCAGTTTACAGCAAAGAGTTTTATTTATCGAAT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057340 35 - 220367699 AGGCAGTTTACAGCAAAGAGTTTTATTTATCGAAT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286867 35 + 130588469 AGGCAGTTTACAGCAAAGAGTTTTATTTATCGAAT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989005 35 - 155834243 AGGCAGTTTACAGCAAAGAGTTTTATTTCCTGAAT
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152124278 30 + 156508116 ---CAGCCTACAAC--AGTGTTTTATTCCTTCGAT
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28601696 35 -  88915250 AGGCGGCTTACAGCAAAGAGTTTTATTACTTGGAT
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           18990 823 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=9042.000000
s hg38.chr1_KI270714v1_random      17672 2 +     41717 AT
s panTro4.chr1_GL389124_random     17285 2 +     50403 AT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057943 2 + 229942017 GT
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269471 2 -  28733288 GT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220024606 2 - 229590362 GT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906500 2 + 227556264 GT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057375 2 - 220367699 GT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286902 2 + 130588469 GT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989040 2 - 155834243 GT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_14441           19813 2 -     21498 AT
i micMur1.scaffold_14441       I 823 I 674
s mm10.chr4                    152124308 2 + 156508116 GT
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28601731 2 -  88915250 GT
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=711647.000000
s hg38.chr1_KI270714v1_random      17674 198 +     41717 -TACA-GAG--GAGAA--AGGGTctgtacaccgcacacttcacacagaacactgcacacGTGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-AGAGAGCAG-GCCACACTGCCCCAG-GGAGGAGCCGCAGCCCCTC-ACTCAGAGGGGCT-TCTTCTGCTGCCTGGCTCC-ACACAGAGCTCAGCAAG
s panTro4.chr1_GL389124_random     17287 198 +     50403 -TACA-GAG--GAGAA--AGGGTCTGTACACCGCACACTTCACACAGAACACTGCACACGTGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-AGAGAGCAG-GCCACACTGCCCCAG-GGAGGAGCCGCAGCCCCTC-ACTCAGAGGGGCT-TCTTCTGCTGCCTGGCTCC-ACACAGAGCTCAGCAAG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224057945 198 + 229942017 -TACA-GAG--GAGAA--AGGGTCTGTACACGGCACACTTCACACAGAACACTGCACACGTGGCTCCCTTGACCTCAGCCAATGAGGTAGCTGTGAACTCCAGTGGAAAACC-AAAGAGCAG-GCCACACTGCCGCAA-GGAGGAGCCGCAGCCCCTC-ACTCAGAGGGGCT-TCTTCTGCTGCCTGGCTCC-ATACAGAGCTCAGCAAG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269473 201 -  28733288 -TACA-GAGGAGAGAA--AGGGTctgtacacagcacacttcacacagaacactgcacacGTGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-AAAGAGCAG-GCCACACTGCCGCAA-GGAGGAGCCGCAGCCCCTC-ACTCAGAGGGGCTAAATGCTGCTGCCTGGCTCC-ACACAGAGCTCAGCAAG
i nomLeu3.chr24                C 0 I 6359
s rheMac3.chr1                 220024608 195 - 229590362 -TACA-GAG--GAGAA--AGGGTCTGTACACGGCACACTTCACACGGAACACTGCACACGAGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-GGAGAGCAG-GCCACACTGCCACAA-GGGGGAGCCGCAGCCCCTC-ACTCAGAGGGGCT----TCTGCTGCCTGGCTCC-ACACAGAGCCCAGCAAT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906502 195 + 227556264 -TACA-GAG--GAGAA--AGGGTCTGTACACGTCACACTTCACACGGAACACTGCACACGAGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-GGAGAGCAG-GCCACACTGCCACAA-GGGGGAGCCGCAGCCCCTC-ACTCAGAGGGGCT----TCTGCTGCCTGGCTCC-ACACAGAGCCCAGCAAT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057377 195 - 220367699 -TACA-GAG--GAGAA--AGGGTCTGTACACGGCACACTTCACACGGAACACTGCACACGAGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-GGAGAGCAG-GCCACACTGCCACAA-GGGGGAGCCGCAGCCCCTC-ACTCAGAGGGGCT----TCTGCTGCCTGGCTCC-ACACAGAGCCCAGCAAT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125286904 196 + 130588469 -TACA-GAG--GAGAA--AGGGTCTGTACACGGCACACTTCACACGGAACACTGCACACGAGGCTCCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTCCAGTGGAAAACC-GGAGAGCAG-GCCACACTGCCACAAGGGGGGGGCCGCAGCCCCTC-ACTCAGAGGGGCT----TCTGCTGCCTGGCTCC-ACACAGAGCCCAGCAAT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989042 198 - 155834243 -TACAGGAG--AACAG--AAGGTCTGTACACTGCACACTTCACAGACAACACTGCACACGCGGCTTCCTTGACCTCAGCCAAGGAGGTAGCTGTGAACTGCAGTGGAAAACC-GGAGAGCAG-ACCACACTGCTGCAA-GGGGGACCCGCAG-CCCTC-ACTCAGAGGGGCT-TCTTTTGCTGCCTGGCTGC-ACACAGAGCCCAGCAAG
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152124310 160 + 156508116 -TACA-GAA--GAGAAGGGGGGTCTGTGCACATCACACATCACACAGAACATTCCACAGGTG---------------ACCACGGAGGTAGC---AAACCCCAG-AGATGGTG-AGATGGAAG---CCCACTGCCTCAG-GGA--ACCCAGAGTCCCTTAACTCAGA-AAGCT----TCTGCTGTCTGGCTTC-ACA--------------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28601733 181 -  88915250 TTACA-GAG--GAGAA-------------------CACGTCACACAGAACACTACACACGTGGCTCCCTTGACCT----CAAAGAAGTAGCTGTGAATTCCAGTGAAAAACCAAGAGAGGAGAGCCACACTGCCCCAA-GGGGGACCCATGGTCCCTC-ACTCAGGGGGCCT-GCTTCTTCAACCTGGCTCCAACACAGAGCCCCCCATA
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           19815 674 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=336100.000000
s hg38.chr1_KI270714v1_random      17872 109 +     41717 -----------------------------ACCACGGGGCCAGA-GGGGGACACCTGGTTTGTTCTGTG-CCTGCCCTGCCTATCC-GACCAACGCCCCACACAGCCTGCTCACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
s panTro4.chr1_GL389124_random     17485 109 +     50403 -----------------------------ACCACGGGGCCAGA-GGGGGACACCTGGTTTGTTCTGTG-CCTGCCCTGCCTATCC-GACCAACGCCCCACACAGCCTGCTCACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058143 106 + 229942017 -----------------------------GCCACGGGGCCAGA-GGCGGACACCTGGTTTGTTCTGTG-CCTGCCCTGCCTATCC-GACCAACGCCC--CACAGCCTGC-CACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276033 106 -  28733288 -----------------------------TAAACGGGGCCAGA-GGGGGACACCTGGTTTGTTCTGTC-CCTGCCCTGCCTATCC-GATCAACGCCC--CACAGCCTGC-CACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i nomLeu3.chr24                I 6359 C 0
s rheMac3.chr1                 220024803 106 - 229590362 -----------------------------GCCACGGGGCCAGA-GGGGGACAGCTGGTTTGTTCTGTG-CGTGCCCTGCCTATGC-GACCAACGCCC--CACAGCCTGC-CACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906697 106 + 227556264 -----------------------------GCCACGGGGCCAGA-GGGGGACAGCTGGTTTGTTCTGTG-CGTGCCCTGCCTATGC-GACCAACGCCC--CACAGCCTGC-CACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057572 106 - 220367699 -----------------------------GCCACGGGGCCAGA-GGGGGACACCTGGTTTGTTCTGTG-CGTGCCCTGCCTATGC-GACCAACGCCC--CACAGCCTGC-CACGATGGgacctcagaggct-----gaggcagcct
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287100 106 + 130588469 -----------------------------GCCATGGGGCCAGA-GGGGGACACCGGGTTTGTTCTGTG-CGTGCCCTGCCTATGC-GACCAACGCCC--CACAGCCTGC-CACGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989240  96 - 155834243 -----------------------------GCCAGGGTCTCAGA-GGGGGACACCTGGTTTGTTTCGTG-CATGACCTGTCTATCT-GACCAACCCCC-------------CATGATGGGACCTCAGAGGCT-----GAGGCAGCCT
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152124470  92 + 156508116 -----------------------------------------GA-GAGAAACACCTGCCCTGCCCCCT-------CAAGCTCATG--AACGAATGCCT--CACTTCCTCC-CTCCTAGGGACCTCAAAGGTCCCAAAGAAGCAGACT
i mm10.chr4                    C 0 I 29
s canFam3.chr5                  28601914 138 -  88915250 ACCCCCCACCCCCACCCCCTGTGAGTCCTGCGATGGGGTGGGGTGGGGGACAGCTGGCTTGCCCTGTGCCCTGCCCTGCCCATTCTGGCCACTGCCC--CACATTTGGC-CATGGTGGGGTTTCAAAGGCT-----GTGGCAGCCT
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           19815 674 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=152706.000000
s hg38.chr1_KI270714v1_random      17981 42 +     41717 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
s panTro4.chr1_GL389124_random     17594 42 +     50403 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058249 42 + 229942017 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276139 42 -  28733288 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220024909 42 - 229590362 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906803 42 + 227556264 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057678 42 - 220367699 gg---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287206 42 + 130588469 GG---TCCTGGGCCCTCCGGGCTGCTCAAGGCCAC-------AGTCCTGGGT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989336 42 - 155834243 GG---TCCTGGGCCCTCTGGGCGGTTCAAGGTCAC-------CATCCCGGGT
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28602052 52 -  88915250 GGTCCTCCTGGGCACTCTGGGTTTTCCAAGGCCACCCCGCCGGCTTCTGGGT
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152124562 29 + 156508116 I
e micMur1.scaffold_14441           19815 674 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=1350492.000000
s hg38.chr1_KI270714v1_random      18023 348 +     41717 TCTTCCCG-CT-GCTTCACGCCTCTGGAGGGCGTCAGACAGGCGTCCAGGCCCACGTTAAGACGCTCGAGGGTGAACTGCGAATTCCGAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAATTCGCCCATCTCAGACACTAGTTCCAAAGGGTCTTCGGCGGGGGCTTCGGAACCCGGAGAGTCTGAGATCCGGGGAAgcgcggcgggcgggcgggcggg--cgggggcggcggCTGCGGCACAGGGGCCAGGGCCTCGCGCTGCCCCTCGGGCGGGTCCCCCTTCTGAA
s panTro4.chr1_GL389124_random     17636 344 +     50403 TCTTCCCG-CT-GCTTCACGCCTCTGGAGGGCGTCAGACAGGCGTCCAGGCCCACGTTAAGACGCTCGAGGGTGAACTGCGAATTCCGAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAATTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTTCGGCGGGGGCTTCGGAACCCGGAGAGTCTGAGATCGGGGGAGGCGTggcgggcgggcgggcggg------ggcggcggctgcggcgcAGGGGCCAGGGCCTCGCGCTGCCCCTCGGGCGGGTCCCCCTTCTGAA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058291 342 + 229942017 TCTTCCTG-CT-GCTTCCAGCCTCTGGAGGGCGTCAGACAGGCGTCCAGGCCCACGTTAAGACGCTGGAGGGTGAACTGCCAATTCCAAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCTTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTTCGGCGGCGGCTTCGGAACCAGGAGAGTCTGAGGTcgggggaggcgcggcgggcgg--gggcgac------ggcggcggctgcggcgCAGGGGCCAGGGCCTCGGGCTGCCCCTCAGGCGGGTCCCCCGTCTGAA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276181 348 -  28733288 TCTTCCCG-CT-GCTTCCAGCCTCTGGAGGGCGTCAGACAGGCGTCCAGGCCCACGTTAAGACGCTCGAGAGTGAACTGTGAATTCCGAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCTTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATTTCAGACACCAGCTCCAAGGGGTCTTCGGCGGGGGCTTTGGAACCAGGAGAGTCTGAGGTcgggggaggcgcggcgggcgg--gggcggcggcggcggctgcggctgcggcgCAGGGGCCAGGGCCTCGGGCTGCCCCTCAGGCGGGTCCCCCATCTGAA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220024951 336 - 229590362 TCTTCCTG-CT-GCTTCCGGCCTCTGGAGGGCGTCAGACAGGCGTCCAGACCCACGTTAAGACGCTGGAGGGTGAACTGCGAATTCCGAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTTCGGCGGGGGCTCCGGAACCAGGAGAGTCTGAGGTCGGGGGAGGCGCAGCAGGCGG--GGGCGGC------------GGCTGCGGCGCAGGGGCCAGGGCCTCGGGCTGCCCCTCGGGCAGGACCCCTGTCTGAA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221906845 336 + 227556264 TCTTCCTG-CT-GCTTCCGGCCTCTGGAGGGCGTCAGACAGGCGTCCAGACCCACGTTAAGACGCTGGAGGGTGAACTGCGAATTCCGAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTTCGGCGGGGGCTCCGGAACCAGGAGAGTCTGAGGTCGGGGGAGGTGCAGCAggcgg--gggcggc------------ggctgcggcgCAGGGGCCAGGGCCTCGGGCTGCCCCTCGGGCAGGACCCCTGTCTGAA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211057720 324 - 220367699 TCTTCCTG-CT-GCTTCCGGCCTCTGGAGGGCGTCAGACAGGCGTCCAGACCCACGTTAAGACGCTGGAGGGTGAACTGCGAATTCCGAATTCCGCTGCTCAGATGTCAAACagctctgcctccttctccttccaGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTT------------CGGAACCAGGAGAGTCTGAGGTTgggggaggcgcagcaggcgg--gggcggc------------ggctgcggcgcaggggccagggcctcgggctgcccctcgggcaggACCCCTGTCTGAA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287248 336 + 130588469 TCTTCCCG-CT-GCTTCCGGCCTCTGGAGGGCGTCAGACCGGCGTCCAGGCCCACGCTAAGACGCTGGAGGGTGAACTGCGAATTCCGAATTCCGCTGCTCAGATGTCAAACAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTTCGGCGGGGGCTTCGGAACCAGGAGAGTCTGAGGTcggcggaggtgcagcaggcgg--gggcggc------------ggctgcggcgCAGGGGCCAGGGCCTCGGGCTGCCCCTCGGGCAGGACCCCTGTCTGAA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989378 336 - 155834243 TCTTCCTG-CT-GCTGCCGGCCTCCGGAGGGCGTCAGACAGACATCCAGGCACAGGTTAAGATGCTCGAGGGTGAACTGTGAATTCCAAATTCCGCCGCTCAGATGTCAAATAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCGATGTAGCGGCAGATGTCCTCGTTGCTGAACTCGCCCATCTCAGACACCAGTTCCAAGGGGTCTTCGGCGGGGCCTTCAGATCCAGGAGAGTCTGAGATCGGGGGAggcgcggcgggcgg--gggtggc------------cgctgcggggcagcggccggggccTCGGGCTGCCCCTTGGGCGGGTCACCAATCTCAA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152124591 302 + 156508116 TCTTTCTGTCT-GATTCTGGCCTctcga---tgtcagacaggcatccagggaca-------------------aaacta--aactctacatt-tgctg-tcaaatgtcaaagagttctgcctccttctccttccaAAAGGAGAAGCTGCGGTCAATATAGCGGCAAATGGCCTCATTACTGAATTCGCCCATCTCAGACACCAGCTCCAAGGGCTCTTCAGTTGGGGGTTCTGAACTAGGCAGGTTTGAGGTTGGGGGAGGTGCAGCGGG-----AGGCAGT------------GGCGGTGGCGCAGGGGTTGGGTCTTCTGTCTGGTCCTCTGGCGAGCCCTGTG------
i mm10.chr4                    I 29 C 0
s canFam3.chr5                  28602104 330 -  88915250 TCTTCCTG-CCGGCTTCTGGCCTCCGGAGGGCATCAGACAGGCATCTGGCCCGGGATTAAGATGCTTGAG-------TGGAAATTCCGAATT------CTCAGATGTCAAAGAGCTCTGCCTCCTTCTCCTTCCAGAAGGAGAAGCTGCGGTCAATATAGCGGCAGATGTCCTCATTGCTGAACTCGCCCATCTCAGACACCAGCTCCAGGGGATCTTCGACAGGGGCTTCAGGACTAGGCGGGTCCCACGTGGGGGGAGGCGCGGCTGGCGG--AGGTGGG------GTCGGAGACTGCGGCGCAGGAGCTGGGGCCTCGGGCTGCCCCTCGGGCCAGTCCACCGTGTGGG
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           19815 674 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=12771.000000
s hg38.chr1_KI270714v1_random      18371 4 +     41717 CCGG
s panTro4.chr1_GL389124_random     17980 4 +     50403 CCGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058633 4 + 229942017 GTGG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276529 4 -  28733288 CTGG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025287 4 - 229590362 CTGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221907181 4 + 227556264 CTGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058044 4 - 220367699 CTGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287584 4 + 130588469 CTGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989714 4 - 155834243 CTGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_14441           20489 3 -     21498 -CGT
i micMur1.scaffold_14441       I 674 I 35
s mm10.chr4                    152124893 4 + 156508116 ATGG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28602434 4 -  88915250 CCGA
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=30968.000000
s hg38.chr1_KI270714v1_random      18375 7 +     41717 AGCGGCC
s panTro4.chr1_GL389124_random     17984 7 +     50403 AGCGGCC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058637 7 + 229942017 AGCGGCC
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276533 7 -  28733288 AGCGGCC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025291 7 - 229590362 AGCGGCC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221907185 7 + 227556264 AGCGGCC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058048 7 - 220367699 AGCGGCc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287588 7 + 130588469 AGCGGCC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989718 7 - 155834243 GGCGGCT
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152124897 7 + 156508116 AGCGGAT
i mm10.chr4                    C 0 I 3
s canFam3.chr5                  28602438 7 -  88915250 AGCGACC
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           20492 35 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=37670.000000
s hg38.chr1_KI270714v1_random      18382 11 +     41717 TCTTCGGTCCG
s panTro4.chr1_GL389124_random     17991 11 +     50403 TCTTCGGTCCG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058644 11 + 229942017 TCTTCGGTCCG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276540 11 -  28733288 TCTTCGGTCCG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025298 11 - 229590362 TCTTCGGTTAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221907192 11 + 227556264 TCTTCGGTTAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058055 11 - 220367699 tcttcggttag
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287595 11 + 130588469 TCTTCGGTTAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989725 11 - 155834243 TCTTCCGTCCG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_14441           20527 11 -     21498 tctcctttttc
i micMur1.scaffold_14441       I 35 I 402
s mm10.chr4                    152124907 11 + 156508116 TCTTCGGTGGG
i mm10.chr4                    I 3 I 99
s canFam3.chr5                  28602445 11 -  88915250 TTTTCCGCGGG
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=1025341.000000
s hg38.chr1_KI270714v1_random      18393 245 +     41717 ------------CTCCTGTTCTTTCCCCTTCTCTTCCTTTTTCTTCGCCTG------------------------------------------TTCTTCGGGGGCCGGCCCAGCCTCCAGGCCGTTTCCGAAGAACCTGTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCCGGCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGTCCAGCCGGTGGAACATCTCGTAGCACAGTAGGTGGCGGAACTTGCGATCCTCGCGGC
s panTro4.chr1_GL389124_random     18002 245 +     50403 ------------CTCCTGTTCTTTCCCCTTCTCTTCCTTTTTCTTCGCCTG------------------------------------------TTCTTCGGGGGCCGGCTCAGCCTCCAGGCCGTTTCCGAAGAACCTGTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCCGGCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCAGGGGTGGCTGTCCAGCCGGTGGAACATCTCGTAGCACAGTAGGTGGCGGAACTTGCGATCCTCGCGGC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224058655 240 + 229942017 ------------CTCCTGTTCTTTCCTCTCCTCTTCCTTTTTCTTCGCCTG------------------------------------------TTCTTCGGGGGTCGGCTCAGCCTCCAGGCCGTTTCCGAGAA--CGCTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCCGGCCGGCCTCCACCTCCTCCAGCACCACGCGGTGG-AGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCTGTCGAACATCTCGTAGCACAGTA-GTGGCGG-ACTTGCGCTCCTCGCGGC
i ponAbe2.chr1                 C 0 I 450
s nomLeu3.chr24                 22276551 245 -  28733288 ------------CTCCTGTTCTTTCCCCTCCTCTTCCTTTTTCTTCGCCTG------------------------------------------TTCTTCGGGGGCCGGCTCAGCCTCCAGGCCGTTTCCGAAGAACTGGTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCCGGCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGCAGGTGGCGGAACTTGCGTTCCTCGCGGC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025309 239 - 229590362 ------------CTCTCGTTCTTT------CTCTTCCTTTTTCTTCTCCTG------------------------------------------TTCTTCTGGGGCTGGCTCAGCCTCCAGGCCATTCCCGAAGAACCGGTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCCGTCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGTAGGTGGCGGAACTTGCGCTCCTCGCGGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221907203 239 + 227556264 ------------CTCTCGTTCTTT------CTCTTCCTTTTTCTTCTCCTG------------------------------------------TTCTTCTGGGGCTGGCTCAGCCTCCAGGCCATTCCCGAAGAACCGGTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCCGTCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGTAGGTGGCGGAACTTGCGCTCCTCGCGGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058066 239 - 220367699 ------------ctctcgttcttt------ctcttcctttttcttctcctg------------------------------------------ttcttctGGGGCTGGCTCAGCCTCCAGGCCATTCCCGAAGAACCGGTGCCTGAGGTCCTCGAAGCCGTCGCTCCAGCCGCGCTTTCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGTAGGTGGCGGAACTTGCGCTCCTCGCGGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287606 239 + 130588469 ------------CTCGCGTTCTTT------CTCTTCCTTTTTCTTCTCCTG------------------------------------------TTCTTCTGGAGCTGGCTCAGCCTCCAGGCCATTCCCGAAGAACCGGTGCCTGAGGTCTTCGAAGCCGTCGCTCCAGCCGCGCCGTCCGGCCTCCACCTCCTCCAGCACCACGCGGTGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGTAGGTGGCGGAACTTGCGCTCCTCGCGGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989736 245 - 155834243 ------------CTCCTGTTCTTTCTCCTCCTCTTCCTTTTTCTTCGTCTG------------------------------------------TTCTTCGGGGGCCAGCTCAGCCTCCAGGCCGTCTCCGAAGAACCTGTGCCTGAGGTCCTCGAAGCCATCGCTCCAGCTGCGCCGGCCGACCTCCACTTCCTCCAGCACCACACGATGGAAGAGGCGGATGCGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGCAGGTGGCGGAACTTGCGCTCCTCGCGGC
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152125017 287 + 156508116 ------------ctccagtttctccttctcttcctccttctcttcctcctggtcttgctctttctcctccccttcttcctcttcctcTCGAGTCTCTTCTGGAGCCGGCTCAGGTTCCGGGCTGTCTCCGAAGAATTGGCGCCTGAGGTCTTCGAAGCCATCGTCCCAGCTACGCGTACCAGCCTCTACCTCCTCAAGCACTGCCCGGTGGAACTGGCGGATAAGCTCCCACGGATGGCTGCCCAGACGGTCAAACATCTCGTAGCACAGTAGGTGACGGAATTTCCGTTCCTCTCGGC
i mm10.chr4                    I 99 C 0
s canFam3.chr5                  28602456 263 -  88915250 ctccttctcctcctcctcttcgttctcctcccccttctctcgctcctcctcggcctc------------------------------------ttcttccCGCGCCGGCTCAGCCTCCGGGCTGTCTCCAAAGAACTGGCGCCTGAGGTCCTCAAAGCCGTCGCTCCAGCTGCGCCGGCCAGCCTCCACCTCCTCGAGCACGACGCGGTGGAAGCGGCGGATGAGCTCCCACGGGTGGCTGCCCAGCCGGTCGAACATCTCGTAGCACAGCAGGTGGCGGAACTTGCGCTCCTCTCGGC
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           20538 402 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=614701.000000
s hg38.chr1_KI270714v1_random      18638 141 +     41717 TCAGGCCCATCTCCGGTAGCTGGAAGTAGCCGAGCATGAAGAGGTCGAGCGTGAGGCTTTCGTAGCGCGGGGGTGCGCCGCCGTCTAGGGGCGACAGGAAGTGCTGGGGCCAGTACACGCCGTGCGCGCCAGGCCCGGGCT------------
s panTro4.chr1_GL389124_random     18247 139 +     50403 TCAGGCCCATCTCCGGTAGCTGGAAGTAGCCGAGCATGAAGAGGTCGAGCGTGAGGCTTTCGTAGCGCGGGGGTGCGCCGCCGTCTAGGGGCGACAGGAAGTGCTGGGGCCAGTACACGCCGTGCGC--CAGGCCCGGTCT------------
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224059345 138 + 229942017 TCAGACCCATCTCGAGTAGATTGAAGTAGCCGAGCATGAAGAGGTCCAGCGTGAGGCTGTCGTAGCGTAGGGGTGCGCCGCCGTCCAGGGGCGGCAGGAAGTGCTGGGGCCAGTACAGGCCGTGCGC--CAGGCCCGGGC-------------
i ponAbe2.chr1                 I 450 C 0
s nomLeu3.chr24                 22276796 139 -  28733288 TCAGGCCCATCTCGAGTAGCTGGAAGTAGCCGAGCATGAAGAGGTCGAGCGTGAGGCTGTCGTAGCGCGGGGGTGCGCCGCCGTCCAGGGGCGGCAGGAAGTGCTGGGGCCAGTACAGGCCGTGCGC--CAGGCTCAGGCT------------
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025548 139 - 229590362 TCAGGCCCATCTCGAGTAGCTGGAAGTAGCCGAGCATGAAGAGGTCCAGCGTGAGGCTGTCGTAGCGCGGGGGTGCGCCGCCGTCCAGGGGCGGCAGGAAGTGCTGGGGCCAGTACAGGCCGTGCGC--CAGGCCCGGGCT------------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221907442 139 + 227556264 TCAGGCCCATCTCGAGTAGCTGGAAGTAGCCGAGCATGAAGAGGTCCAGCGTGAGGCTGTCGTAGCGCGGGGGTGCGCCGCCGTCCAGGGGCGGCAGGAAGTGCTGGGGCCAGTACAGGCCGTGCGC--CAGGCCCGGGCT------------
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058305 139 - 220367699 TCAGGCCCAtctcgagtagctggaagtaGCCGAGCATGAAGAGGTCCAGCGTGAGGCTGTCGTAGCGCGGGGGTGCGCCGCCGTCCAGGGGCGGCAGGAAGTGCTGGGGCCAGTACAGGCCGTGCGC--CAGGCCCGGGCT------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287845 139 + 130588469 TCAGGCCCATCTCGAGTAGCTGGAAGTAGCCGAGCATGAAGAGGTCCAGCGTGAGGCTGTCGTAGCGCGGGGGTGCGCCGCCGTCCAGGGGCGGCAGGAAGTGCTGGGGCCAGTACAGGCCGTGCGC--CAGGCCCGGGCT------------
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114989981 139 - 155834243 TCAGGCCCATCTCCAGCAGCTGGAAGTAGCCGAGCATGAAGAGGTCGAGCGTGAGGCTGTCGTAGCTAGGCGGTGCGCCGCCGTCCAAGGGTGGCAGGAAGTGCTGGGGCCAGTACAAGCCGTGCGC--CAGCCCTGGGCT------------
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152125304 139 + 156508116 TCAGACCCATTTCCAGCAGCTGAAAGTAGCCTAACATGAAAAGATCCAGAGTGAGACTGTCGTAGCTCCTCGGAGCGCCGCCGTCCAAGGGTGGCAGGAAGTGCTCGGGCCAGTACAGACCATGGGT--AAGCTCGGAGCC------------
i mm10.chr4                    C 0 I 12
s canFam3.chr5                  28602719 151 -  88915250 TCAGGCCCATCTCGAGCAGCTGGAAGTAGCCAAGCATGAAGAGGTCGAGCGTGAGGCTGTCGTAGCGTGGGGGCGCGCCGCCGTCGAGGGGCGGCAGGAAGTGCTCAGGCCAGTACAGGCCGTGCGC--CAGACCCGAGCCGCACGGGGGGCG
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_14441           20538 402 -     21498 I
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=15101.000000
s hg38.chr1_KI270714v1_random      18779 4 +     41717 TGGC
s panTro4.chr1_GL389124_random     18386 4 +     50403 TGCC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224059483 4 + 229942017 TGCC
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276935 4 -  28733288 TGCC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025687 4 - 229590362 TGCC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221907581 4 + 227556264 TGCC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058444 4 - 220367699 TGCC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287984 4 + 130588469 TGCC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114990120 4 - 155834243 TGCC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_14441           20940 4 -     21498 TGGC
i micMur1.scaffold_14441       I 402 N 0
s mm10.chr4                    152125455 4 + 156508116 CGCT
i mm10.chr4                    I 12 C 0
s canFam3.chr5                  28602870 4 -  88915250 CGCG
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=21505.000000
s hg38.chr1_KI270714v1_random      18783 4 +     41717 GGCA
s panTro4.chr1_GL389124_random     18390 4 +     50403 GGCA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224059487 4 + 229942017 GGCA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276939 4 -  28733288 GGCA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220025691 4 - 229590362 GGCA
i rheMac3.chr1                 C 0 M 666
s macFas5.chr1                 221907585 4 + 227556264 GGCA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058448 4 - 220367699 GGCA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287988 4 + 130588469 GGCA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114990124 4 - 155834243 GGCA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152125459 4 + 156508116 GGCA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28602874 4 -  88915250 GGCA
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=46411.000000
s hg38.chr1_KI270714v1_random      18787 14 +     41717 CGTGCCGCCGCAGG
s panTro4.chr1_GL389124_random     18394 14 +     50403 CGTGCCGCAGCAGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224059491 14 + 229942017 CGCGCCGCAGCAGG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22276943 14 -  28733288 CGCGCCGTAGCAAG
i nomLeu3.chr24                C 0 T 7178
s macFas5.chr1                 221907589 14 + 227556264 CGCGCCGCAGCAGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058452 14 - 220367699 CGCGCCGCAGCAGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125287992 14 + 130588469 CGCGACGCAGCAGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114990128 14 - 155834243 CGCGCCGCAGCAGG
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152125463 14 + 156508116 CCTGCCTTAGCAGG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28602878 14 -  88915250 CCTGCCGCAGCAGG
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220025695 666 - 229590362 M
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I

a score=559036.000000
s hg38.chr1_KI270714v1_random      18801 226 +     41717 CTCCGCCAGTGGTGCAGCAGCTTGCCCACTGCCTGCCGCTGCCTCAGCAGCTGCCGCAGCCGTTCGTTGGGGCTGTGGGCCTCGCCCTTGCTCACCG---GCAGCCGGGG---------GGCGTCCGTGGCCTCCAGCTCC-GGCCAGCACGGGCGGCCGTCACGCCAGGGAGCAGTCTGCCTAGGCGCGCCTGGTCCGCGGAAGGCCCGGTCCGAGGAAGGCCCAGAGGCGCCAGTGC
s panTro4.chr1_GL389124_random     18408 224 +     50403 CTCCGCCAGTGGTGCAGCAGCTTGCCCACTGCCTGCCGCTGCCTCAGTAGCTACCGCAGCCGTTCGTCGGGGCTGTGGGCCTCGCCCTTGCTCGCCG---GCAGCCGGGG---------GGCGTCTGTGGCCTCCAGCTCC-GGCCAGCACCGGCGGCCGTCACGCGAGGCAGCAGTCTGCCTAGGCGCGCCTG-TGCGCGGC-GGCCTGGTCCGCGGAAGGCCCAGCGGCGCCAGTGC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224059505 225 + 229942017 CTCCGCCAGTGGCCCAGCAGCTTGCCCACCGCCTGCCGCTGCCTCAGCAGCTGCCGCAGCCATTCGTCGGGGCTGTGGGCCTCGCCGTTGCTCGTCG---GCAGCCGGGG---------GGCGTCCGTGGCCTCCAGCCCCGGGCCGGCATCGGCGGCCGCCACGCTGGGCAGCTGTCTGCGTAGGCGCGCCTG-GGCGCGGC-GGCCTTGTCCGCGGAAGGCCCAGCGGCGCCAGTGC
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221907603 225 + 227556264 CTCCGCCAGTGGCCCAGCAGCTTGCCTACCGCCTGCCGCTGCCTCAGCAGCTGCCGCAGTCGTTCGTCGGGACCGTGGGCTGCGCCGTCGCTCGCTG---GCAGCCGGGG---------GGCGTCCGTGGCCTCCAGCTCCGGGCCGGCACCGGCGGCCGCCACACGGGGCAGCAGTCTGCGTAGGCGCGCCTG-GGCGCGGC-GGCCCGGGCCGCGGAAAGCCCAGCGGCGCCAGTGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058466 225 - 220367699 CTCCGCCAGTGGCCCAGCAGCTTGCCTACCGCCTGCCGCTGCCTCAGCAGCTGCCGCAGTCGTTCGTCGGGACCGTGGGCTGCGCCGTCGCTCGCTG---GCAGCCGGGG---------GGCGTCCGTGGCCTCCAGCTCCGGGCCGGCACCGGCGGCCGCCACACGGGGCAGCAGTCTGCGTAGGCGCGCCTG-GGCGCGGC-GGCCCGGGCCGCGGAAAGCCCAGCGGCGCCAGTGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125288006 225 + 130588469 CTCCGCCAGTGGCCCAGCAGCTTGCCTACCGCCTGCCGCTGCCTCAGCAGCTGCCGCAGTCGTTCGTCGGGACCGTGGGCTGCGCCGTCGCTCGCTG---GCAGCCGGGG---------GGCGTTCGTGGCCTCCAGTTCCGGGCCGGCACCGGCGGCCGCCACACGGGGCAGCAGTCTGCGTAGGCGCGCCTG-GGCGCGGC-GGCCCGGGCCGCGGAAGGCCCAGCGGCGCCAGTGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114990142 234 - 155834243 CTCCGCCAGTGGCCCAGCAGCTTGCCCACCGCCTGCCGCTGCCTCAGCAGCTGCCGCAGCCGCTCACCGGGGCCGCGGGCCACGCCGTTGCTCGCCG---GTGGCCGGGGGTCATCTGTGGCGTCCGTGGCCTCCAGCCCCGGGCCGTCACCGGCGGCCACCACGCGGGGCAGCAGTCTGCGTAggcgcgcctg-ggcgcggc-ggcccgggccgcgAAAGGCCCAGCGGCGCCAGTGC
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152125477 228 + 156508116 CTCCTCCAGTGGCCCAGCAGTTTGCCCACCACCTGTCGCTGCTTTAGCAACTGTAGCAGCCGCTCTTCAGGGCCACGGTCCGAGTCCTCAACTGCTGGTTGCTGCTGGAG---------AATGTCTTCTGCCTCTGGGAGGGGACCGGCGCCAGAGGCCACAACCCGGGGCAGCAATCTACGCAGGCGCGCTTG-GGCATGAC-GCCCGGGTCCTTGGAAGGTCCACTTGCGCCAGTGC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28602892 213 -  88915250 CTCCGCCAGTGGCCCAGCAGCTTGCCCACCGCCTGCCGCTGCTTCAGCAGGCGCAGCAGCCGCCCGTCGG------------CGCCGTCGCCTGCCG---GCGGCCCGGG---------TGCCTCAGCGGCCTCGGGGACGGAGCCCGCGCCGGCGGCCACCACGCGGGGCAGCAGTCTGCGTAGGCGCGCCTG-GGCATGGC-GCCCGGGGCCGCGGAAGGTCCACTTGCGCCAGTGC
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220025695 666 - 229590362 M
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=1721456.000000
s hg38.chr1_KI270714v1_random      19027 530 +     41717 TCCAGGAAGA-GGTAAAC-GATGCGCTCC--TTGCGCAGGTC-GAGGTAGT-CCTGG-ACGCCGCGCAGTTC-CGTGCAGA-GGGGCGGCCGGCGCGCCAGCTGC-TCGGG--CTCAGGTA--GCGCCGCCTGGCAATCCTGTGCCTCAGGCGGGCCCAGGGTGTCCAGGGGCTCCCAGTCGGCCAGCGGGCCGTGGGCGGCGGCG------------GCGCTGGGCTGGCCAGAGCCGGCCGCCACGTAGTCCTCCTACAGGATGGGCTCGCGGACCGGGGCGCCAGCGGACTGCGGGGGCTTGCGGCGCGGACAGCGCGGGGGCGCCGCGTCCAGTGCGCGCAGCTCGTAGGTGGCGCGGTGATGCTGCACGGAGGCGCCGCACTCGAGGATCTCGCGCGCCACAGCCTCGCGGCACCAGTTGAGCCAGTGCGAGCGGCCCAGGCAAAGCGGCCCCGGCAGTCAGGGCGCCTCAGGCAGCGGCGCCAGCGGCTGGCCCGTGTCAGCGGTCGGCAGCTCCGCCAGGTGCGCAGGCCGGCAGCCCAGCGCGGCTAG
s panTro4.chr1_GL389124_random     18632 530 +     50403 TCCAGGAAGA-GGTAAAC-GATGCGCTCC--TTGCGCAGGTC-GAGGTAGT-CCTGG-ACGCCGCGCAGTTC-CGTGCAGA-GGGGCGGCCGGCGCGCCAGCTGC-TCGGG--CTCAGGTA--GCGCCGCCTGACAATCCTGTGCCTCAGGCGGGCCCAGGGTGTCCAGGGGCTCCCAGTCGGCCAGCGGGCCGTGGGCGGCGGCG------------GCGCTGGGCTGGCCAGAGCCGGCCGCCACGTAGTCCTCCTACAGGATGGGCTCGCGGACCGGGGCGCCAGCGGACTGTGGGGACTTGCGGCGCGTACAGCGCGGGGGCGCCGCGTCCAGTGCGCGCAGCTCGTAGGTGGCGCGGTGATGCTGCACGGAGACGCCGCACTCGAGGATCTCGCGCGCCACAGCCTCGCGGCACCAGTTGAGCCAGTGCGAACGGCCCAGGCAAAGCGGCCCCGGCAGTCAGGGCGCCTCGGGCAGCGGCGCCAGCGGCTGGCCCGTGTCAGCGGTCGGCAGCTCCGCCAGGTGCGCAGGCCGGTCGCCCAGCGCGGCTAG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224059730 530 + 229942017 TCCAGGAAGA-GGTAAAC-GATGCGCTCC--TTGCGCAGGTC-GAGGTAGT-CCTGG-ACGCCGCGCAGCTC-GGTGCAGA-GGGGCGGCCGGCGCGCCAGCTGC-TCGGG--CTCAGGCA--GCGCCGCCTGGCGATCCTGTACCTCGGGCAGGCCCAGGGTGCCCAGGGGCTCCCCGTCGACCAGCGGGCCGTGGGCGGCGGCG------------GCGCTGGGCTGGCCAGAGCCGGCCGTCACGTAGTCCTCCTCCAGGATGGGCTCGCGGCCCGGGGCGCCAGCGGACTGCGGGGGCTTGCGGCGCGGACAgcgcgcgggcgccgcgccccgTGCGCGCAGCTCGTAGGTGGCGCGGAGATGCTGCACGGAGACGCCGCACTCGAGGATCTCGCGCGCCACAGCCTCGCGGCACCAGCTGAGCGAGTGCGAGCGGCCCAGGCAGAGCGGCCCGGGCAGCCAGGGTGCGTCGGGTAGCGGCGCCAGCGGCTGGCCCGTGTCAGCGGTCAGCAGCTCCGCCAGGTGCGCAGGCCGGCCGCCCAGTGCGGCCAG
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221907828 530 + 227556264 TCCAGGAAGA-GGTAGAC-GATGCGCTCT--TTGCGCAGGTC-GAGGTAGT-CCTGG-ACGCCACGCAGCTC-CGTGCAGA-GGGGCGGCCGGCGCGCCAGCTGC-TCGGG--CTCAGGCA--GCGCCGCCTGGCGATCCTTTGCCTCGGGCGGGCCCAGGGTGCCCAGGGGCTCCCAGTCGGCCAGCGGGCCGTGGGCGGCGCCG------------GCGCTGGGCTGGCCAGAGCCGGCCGCCACGTAGTCCTCCTCCAGGATGGGCTCGCGGCCCGGGGCGCCAGAGGACTGCGGGGGCTTGCGGCGCGGACAGCGCGCGGGCTCCGCGCCCCGTGCGCGCAGCTCGTAGGTGGCGCGCAGATGCTGCACTGAGACGCCGCACTCGAGGATCTCGCGCGCCACGGCCTCGCGGCACCAGCTGAGCGAGTGCGAGCGGCCCAGGCACAGCGGTCCGGGCCGCCAGGGCGCGTCGGGCAGCGGCGCTAGCGGCTGGCCGGTGTCAGCGGTCAGCAGTTCCGCCAGGTGCGCAGGCCGGCCGCCCAGCGCGGCCAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211058691 532 - 220367699 TCCAGGAAGA-GGTAGAC-GATGCGCTCT--TTGCGCAGGTC-GAGGTAGT-CCTGGAACGCCGCGCAGCTC-CGTGCAGA-GGGGCGGCCGGCGCGCCAGCTGCTTCGGG--CTCAGGCA--GCGCCGCCTGGCGATCCTTTGCCTCGGGCGGGCCCAGGGTGCCCAGGGGCTCCCAGTCGGCCAGCGGGCCGTGGGCGGCGCCG------------GCGCTGGGCTGGCCAGAGCCGGCCGCCACGTAGTCCTCCTCCAGGATGGGCTCGCGGCCCGGGGCGCCAGAGGACTGCGGGGGCTTgcggcgcggacagcgcgcgggctccgcgccccgtgcgcgcagctcgtaggcggcgcgcAGATGCTGCACTGAGACGCCGCACTCGAGGATCTCGCGCGCCACGGCCTCGCGGCACCAGCTGAGCGAATGCGAGCGGCCCAGGCACAGCGGTCCGGGCCGCCAGGGCGCGTCGGGCAGCGGCGCTAGCGGCTGGCCGGTGTCAGCGGTCAGCAGTTCCGCCAGGTGCGCAGGCCGGCCGCCCAGCGCGGCCAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125288231 530 + 130588469 TCCAGGAAGA-GGTAGAC-GATGCGCTCT--TTGCGCAGGTC-GAGGTAGT-CCTGG-ACGCCGCGCAGCTC-CGTGCAGA-GGGGCGGCCGGCGCGCCAGCTGC-TCGGG--CTCAGGCA--GCGCCGCCTGGCGATCCTGTGCCTCGGGCGGGCCCAGGGTGCCCAGGGGCTCCCAGTCGGCCAGCGGGCCGTGGGCGGCGGCG------------GCGCTGGGCTGGCCAGAGCCGGCCGCCACGTAGTCCTCCTGCAGGATGGGCTCGCGGCCCGGGGCGCCAGAGGACTGCGGGGGCTTGCCGCGCGGACAGCGCGCGGGCTCCGCGCCCCGTGCGCGCAGCTCGTAGGTGGCGCGCAGATGCTGCACTGAGACGCCGCACTCGAGGATCTCGCGCGCCACGGCCTCGCGGCACCAGCTGAGCGAGTGCGAGCGGCCCAGGCACAGCGGTCCGGGCCGCCAGGGCGCGTCGGGCAGCGGCGCTAGCGGCTGGCCGGTGTCAGCAGTCAGCAGTTCCGCCAGGTGCGCAGGCCGGCCGCCCAGCGCGGCCAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114990376 542 - 155834243 TCCAGGAAGA-GGTAGAC-GATGCGCTCC--TTACGCAGGTC-GAGGTAGT-CCTGG-ACGCCGCCCAGCTC-GGTGCAGA-GGGGTGGCCGGCGCGCCAGCTCC-TCGGG--CTCAGGCA--GCGCCGCCTGGCGATCCTGCGCCTCGGGAGGGCCCAGGGTGCCCAGGGGCTCCCAGTCGGTCAGCGGGCCGTGAGCGGCGGCGGCGGCAGCGACCGCGCTGGGCTGGCTGGAGCCGGCTGCCACGTAGTCCTCCTCTAGGATGGGCTCACGGCCCGGGGCGCCCGCGGACTGCGGGGGCTTGTGGCGCGGACAGCGCGCGGGCGCCGCGCCTTGCGCGCGCAGCTCGTAGGTGGCGCGGAGATGCTTCACCGAAACGCCGCACTCGAGGATCTCGCGCGCCACGGCCTCGCGGCACCAGCTGAGGGAATGCGAGCGGCCCAGACACTGCGGCCCGGGCCGCCAGGGCGCGTCGGGCAGCGGCGCCAGGGGCTGGCCCGTGTCGGCTGTCAGCAGCTCCGCCAGGTGCGCGGGCCGGCCGCCCAGCGTGGCCAG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500             175 517 -     13323 TCCAAAAAGAGGGTAGGCGGATGCGCTCCCTTTCGGCATGTCGGAGGTAGTCCCTTT-ACGCCGCTCAGCTCGGGTGGGGAGGGGGCGGCCGGTGCGCCAGCTGG-TCGGGGCTTCGGGCAgggccccccctggcgggcc-gcgcctcgggcgcgcccagggcgcccgcgggcTCCC------------------------TGGCG------------GCCTTGGGCTCGCCGGTGCCAGCCGCCACGTAGTCCTCCTCGAGGATGGGCTCGCGACCTGGGGCGCAGGCGGGCTGCGACAGCTTGCGGCGCTGGGCGTGCGCTGGCGCTGAGCCCTGGGCGCGCAGCTCGTAGGTGGCGCGGAGGTGTCGCACGGACACGCCGCACTCGAGGATCTCGCGCGCGACGGCCTCGCGGCACCAGCTGAGCGAGTGCGAGCGGCCCAGACACAGTGGCCCCGGGCCAAAGGGCGCATCTGGCAGCGGCGCCAGCGGCTGGCCCGTGTCGGCGGCCAGCAGTTCGCCTAGGTGGGCGGGCCGGCCGCCCAGTGCGGCCAG
i micMur1.scaffold_20500       N 0 C 0
s mm10.chr4                    152125705 530 + 156508116 TCCAGAAAGA-GATAGAC-AATGCGCTCC--TTGCGCATGTC-GATATAAT-CCTGG-ACGCCAGGCAGCTC-GGTGGAGA-GCGGCGGCCTGCTAGCTAACTGC-TCAGG--CTCCGGAA--GAGCTTCCTCCTGGTGCCACGGCTCCGATGAGTCCAGAGAGTCCGGGGGCTCCTCTGTGGCCCACAGGCCATTTGCGATGGCG------------GCTCTTGGCTCACTGGAACTGATTGCCACGTAGTTCTCCTCGAGGATGGGCTCCCGGTCCAGGGTGCTGGCGGGCTGAGGGAGCTTGCGGCGCAGGCTGTGCGTGGGCGCTGCGCCCTGGGTGCGTTGTTCGTACGCAGCGCGTAGGTCCTGCACCGAGACGCCACATTCAAGGATCTCCCGTGCCACGGCTTCCCGGCACCAACTGAGCGAATGAGAACGTCCCAAGCAGAGTGGTCCAGGCCTTGAGGGTGCGTCTGGCAGCGGCGGCAGCGGTTGGCCAGTGTCTGCAGCTAGCAGCTCCGCCAGATGCGCCGGCCGGCCGCCCAGCGCGGCCAG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28603105 530 -  88915250 TCCAGGAAGA-GGTAGAC-GATGCGCTCC--TTGCGCATATC-TATGTAGT-CCTGG-ACGCCGCGCAGCTC-GGTGGAGA-GCGGCGGCCGGCGCGCCAGCTGC-TCCGG--CTCAggcg--gcgccgcctggtggccgggcgcgtcgggcgggcccggggcgcTAAGGGAGTCCCCCGCGGCCGGCAAGCCGTTGGCGGCGGGG------------GCGCTCGCTTCCCCCGCGCCGGCCGCCACGTAGTCCTCCTCTAGGATGGGTTCTCGGCCGGAGGCGCCGGCAGGAAGCGAGAGCTTGTGGCGCGAGCCGCGCGCGGGCGCGGAGCCCTGGGCGCGCAGCTCGTAGACGGCGCGGAGGTGCTGCACCGAGACGCCGCACTCGAGGATCTCGCGCGCCACGGCCTCGCGGCACCAGCTGAGCGAGTGCGAGCGGCCCAGGCAGAGCGGGCCCGGCCGCCAGGGCGCGTCGGGCAGCGGTGCCAGCGGCTGGCCCGTGTCGGCGGCCAGCAGCTCGGCCAGGTGCGCGGGCCGGCCGCCCAGTGCGGCCAG
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220025695 666 - 229590362 M
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=3075948.000000
s hg38.chr1_KI270714v1_random      19557 739 +     41717 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGGCGGCGCGGCCATGCATTCGGCGCGGGTCGACGGTGAAGCGCGGCTCC-ACAGGGCGACGGAGATGGGCAGCAGCTGCT-CAGCTCCAG------TTGCTCCAGGCGCGCCTCCAGCTTCTGCGCCTTGTGCAGCACCTGCAGGTTCTCGA-TTGCTGCTCGATGCGGAGGATGTCGGCCTCGGTCATGAGCTCGCCAAAGGGCCAGAGGATGGCGTTGTGCTCGCGGGAGTACCTCCAGCCCTCGCGGGGGTACCTCCAGCCCTCGCGGGGGTAGCAGCACGAGCTGGCGGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCAGCTCCCGCCGTGG-CGCC-AGGA--ACCTTTTGCATGTCCTGGGTGGTGTAATGGCTCCGCGGGGCTGCGTCTGCAGGGAGGGACCGCGTCTGGCCGGCG-GGGGGTGACGCTGGGGTGAGGCTTCGGCCTGAGCCGCCGCTCCAGGCTCTGGGCAGTGTCCACTTTGGTCGCTGGCGGGGGGCACGGCCGGTTGCTGCTCGCTGCTGCG-GCGGCA---AGAACAGGCCAGCAGACGGGGTCTCCATGCCTGGCTTGTTCGCTCATTACACCACCCAAGGAACTTGCCAAAGGCCTTGAAGCTG--AGAGGCGCGGTGGCCC--GCCCC-AACCCATCCGAGGGCGGCTATT----
s panTro4.chr1_GL389124_random     19162 725 +     50403 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGGCGGCGCGGCCATGCATTCGGCGCGGGTCGACGGTGAAGCGCGGCTCC-ACAGGGCGGCCGAGATGGGCAGCAGCTGCT-CAGCTCCAGCTCCAGTTGCTCCAGGCGCGCCTACAGCTTCTGCGCCTTGTGCAGCACCTGCAGGTTCTCGA-TTGCTGCTCGATGAGGGGGATGTCGGCCTCGGTCATGAGCTCGCCAAAGGGCCAGAGGATGGCGTTGTGCTCGTGGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCAGGAGCTGGCCGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCTCAGCTCCCGCCGTGG-CACC-AGGA--ACCTTTTGCATGTTCTGGGTGGTGTAATGGCTCCGCGGGGCTACGTCTGCAGGGAGGGACCGCGTCTGGCCGGCG-GGGGGTGACGCTGGGGTGAGGCTTCGGCCTGAGCCGCCGCTCCAGGCTCTGGGCAGTGTCCACTTTGGTCGCTGGCGGGGGGCACGGCCGGTTGCTGGTCGCTGCTGCG-GCGGCA---AGAACAGGCCAGCAGACGGGGTCTCCATGCGTGGCTTGTTCGCTCATTACACCACCCAAGGAACTTGCGAAAGGCCTTGAAGCTG--AGAGGTGCGGTGGCCC--CCCCCCAACCCATCCGAGGGCGGCTATT----
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224060260 725 + 229942017 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGGCGGCGCGGCCATGCATTCGGCGCGGGTCGACGGTGAAGCGCGGCCCCGACAGGGCGGCGGAGATGGGCAGCAGCTGCTCCAGCTCCAGCTCCAGTTGCTCGAGGCGCGCCTCCAGCTTCTGCGCCTTGTGCAGCACCTGCAGGTTCTCGATTTGCTGCTCGATGCGGAGGATGTCGGCCTCGGTCATGAGCTCGCCAAAGGGCCCGAGGATGGCGTTGTGCTCGCGGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCACGAGCTGGCGGCCGTCAGCTAAGGC---GGGGAAGACAAAAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCAGCTCCCGCCATGG-CGCC-GGGA--ACCTTTTGCATGTCCTGGGTGGTGTAATGGCTCCGCGGGGCTGCGTCTGCAGGGAGGGACCGCGTCTGGCCGGT--GGGGGTGACGCTAGGGTGAGGCTTCGGCCCGAGCCGCCGCTCCAGGATCTGGGCAGTGTCCACTTTGGTCGCTGGCGGGGGGCACGGCCGGTCG-TGGTCGCTGCTGCG-GCGGCA---AGAACAGGCCAGCAGACGGGGTCTCCATGCCTGGCTTGTTCGCTCATTACACCACCCAAGGAACTTGCGAAAGGCGTTGAAGCTG--AGAGGCGCGGTGGCCC--TCCCC-AACCCATCCGAGGGCGGCTATT----
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220026361 729 - 229590362 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGACGGCGCGGCCATGCATGCGGCGCGGGTCGACGGTGAAGCGCGGCGCCGACAGGGCGGCCGAGATGGGCAGCAGCTGCTCCAGCTCCAGCTCCAGTTGCTCCAGGCGCGCCTCCAGCTTCTGCGCCTTGTGCAGCACCTGCAGGTTCTCGATTTGCTGCTCGATGCGGAGGATGTCCGCCTCGGTCATGAGCTCGCCGAAGGGCCCAAGGATGGCGTTGTGCTCGCGGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCACGAGCTGGTGGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCAGCTCCCGCAGTGG-TGCC-GGGA--ACCTTTTGCATGTCCTGGGTGGTGTAATGGCTCCGCGGGGCTGCATCTGCAGGGAGGGACCGCGCCTGGCCGGCG-GGGGGTGACGCTGGGGCGTGGCTTCGGCC-GAGCCGCCGCTCCGGTCTCTGCGCAGTGACCACTTTGGTCGCTGGCGGGGGGCACGGCCGGTCGCTGGTCGCTGCTGCG-GCGGCAAGGAGAACAGGCCGGCAGACGGGGTCTCCATGCCTGGCTTGTTGGCTCATTACACCACCCAAGGAACTTGCGAAAGGCGTTGAAACTG--AGAGGCGCGGTGGCCC--TCCCC-AACCAATTCGAGGGTGGCTATT----
i rheMac3.chr1                 M 666 C 0
s macFas5.chr1                 221908358 729 + 227556264 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGACGGCGCGGCCATGCATGCGGCGCGGGTCGACGGTGAAGCGCGGCGCCGACAGGGCGGCCGAGATGGGcagcagctgctccagctccagctccagttgctccaggcgcgcctccagcttctgcgccTTGTGCAGCACCTGCAGGTTCTCGATTTGCTGCTCGATGCGGAGGATGTCCGCCTCAGTCATGAGCTCGCCGAAGGGCCCAAGGATGGCGTTGTGCTCGCGGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCACGAGCTGGTGGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCAGCTCCCGCAGTGG-TGCC-GGGA--ACCTTTTGCATGTCCTGGGTGGTGTAATGGCTCCGCGGGGCTGCATCTGCAGGGAGGGACCGCGCCTGGCCGGCG-GGGGGTGACGCTGGGGCGTGGCTTCGGCC-GAGCCGCCGCTCCGGGCTCTGCGCAGTGTCCACTTtggtcgctggcggggggcacggccggtcgctggtcgctgCTGCG-GCGGCAAGGAGAACAGGCCGGCAGACGGGGTCTCCATGCCTGGTTTGTTGGCTCATTACACCACCCAAGGAACTTGCGAAAGGCGTTGAAACTG--AGAGGCGCGGTGGCCC--TCCCC-AACCAATTCGAGGGTGGCTATT----
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211059223 729 - 220367699 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGACGGCGCGGCCATGCATGCGGCGCGGGTCGACGGTGAAGCGCGGCGCCGACAGGGCGGCCGAGATGGgcagcagctgctccagctccagctccagttGCTCCAGGCGCGCCTCCAGCTTCTGCGCCTTGTGCAGCACCTGCAGGTTCTCGATTTGCTGCTCGATGCGGAGGATGTCCGCCTCGGTCATGAGCTCGCCGAAGGGCCCAAGGATGGCGTTGTGCTCGCGGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCACGAGCTGGTGGCCGTCAGCTAAGGC---GGGGAAGacaagagaggggagggaggcgCGTCTCCCTCTGGCCCAGCTCCCGCAGTGG-TGCC-GGGA--ACCTTTTGCATGTCCTGGGTGGTGTAATGGCTCCGCGGGGCTGCATCTGCAGGGAGGGACCGCGCCTGGCCGGCG-GGGGGTGACGCTGGGGCGTGGCTTCGGCC-GAGCCGCCGCTCCGGGCTCTGCGGAGTGTCCACTTTGGTCGCTGGCGGGGGGCACGGCCGGTCGCTGGTCGCTGCTGCG-GCGGCAAGGAGAACAGGCCGGCAGACGGGGTCTCCATGCCTGGCTTGTTGGCTCATTACACCACCCAAGGAACTTGCGAAAGGCGTTGAAACTG--AGAGGCGCGGTGGCCC--TCCCC-AACCAATTCGAGGGCGGCTATT----
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125288761 729 + 130588469 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGACGGCGCGGCCACGCATGCGGCGCGGGTCGACGGTGAAGCGCGGCGCCGACAGGGCGGCCGAGATGGGcagcagctgctccagctccagctccagttgctccaggcgcgcctccagcttctgcgccTTGTGCAGCACCTGCAGGTTCTCGATTTGCTGCTCGATGCGGAGAATGTCCGCCTCGGTCATGAGCTCGCCGAAGGGCCCAAGGATGGCGTTGTGCTCGCGGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCACGAGCTGGTGGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCAGCTCCCGCAGTGG-TGCC-GGGA--ACCTTTTGCATGTCCTGGGTGGTGTAATGGCTCCGCGGGGCTGCATCTGTAGGGAGGGACCGCGCCTGGCCGGCG-GGGGGTGAAGCTGGGGCGAGGCTTCGGCC-GAGCCGCCGCTCCGGGCTCTGCGCAGTGTCCACTTtggtcgctggcggggggcacggccggtcgctggtcgctgCTGCG-GCGGCAAGGAGAACAGGCCGGCAGACGGGGTCTCCATGCCTGGCTTGTTGGCTCATTACACCACCCAAGGAACTTGCGAAAGGCGTTGAAACCG--AGAGGCGCGGTGGCGC--TCCCC-AACCAATTCGAGGGCGGCTATT----
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114990918 729 - 155834243 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAAATCTTGCTGCACCAGGCGGGCAGGCTGACGGCGCGGCCGTGCATGCGGCGCGGATCGACGGTGAAGCGCGGCGCCGACAGGGCGGCTGAGACGGGCAGCAGCTGCTCCAGCTCCAGCTCCAGCTGCTCCAGGCGCTCCTCCAGCTTCTTCGCCTTGTGCAGCACCTGCAGATTCTCGATTTGCTGCTCGATGCGGAGGATGTCGGCCTCGGTCATGAGCTCGCCGAAGGGCCCGAGGATGGCGTTGTACTCGCGTGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCATGAGCTGGCGGCGGTCAGCTAAGGC---GGGGAAGACAAAAGAGGGGAGGGAGGCGCGTCTGCCTCTGGCCCTGCTCCCGCCGTTG-CGCC-GGGA--ACCTTTTGCATGTCCTAGGTGGTGTAATGGCTCCGCCGGGCTGCGTCTGCAGGGAGGGGCCGCGTCTGGCCGGCGAGGGGGTGACGCTGGGGCGAGGCTTCAGCCCCGGCCGCCGCTCCGGGCTCT-TGCAGTGTCCACTTTGGTCGCTGGCTAGGGCCACGGCCGGTCGTTGGTCGCTGTTGCG-GCGGCAAGGAGGACAGGCCGGCAGACGGGGTCTCCACGCCTGGGATGGTCGCTCATTACACCACCCAAGGAACATGCAAAAGGCCTTGAAGCTG---GAGGCGCGGTGGCCC--TTCCC-AATCCGTCAGATAGCAGCTATT----
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500             692 710 -     13323 CAGCGTGGCCATGCTTTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCGGGCAGGCTGGCGGCGCGGCCGTGCATGCGGCGCGGGTCGACGGTGAAGCGCGGCGCCGACAGGGCGGCCGAGATGGGCAGCAGCTGCTCCAGCTCCAGCTCCAGCTGCTCTAGGCGCGCCTCCAGCTTCTGCGCCTTGTGCAACACCTGCAGGTTCTCAATTTGCTGCTCGATGCGGAGGATGTCGGACTCGGTCATGAGCTCGCCGAAGGGCCCGAGGATGGCGTCGTGCTCGCGGGAGTACCTCCAGCCATCGCGGGGGTA---------------------GCAGCACGAGCTGGCGGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCAGCTCCCGCAGTGG-CGCCGGGGG--ACCTTTTGCATGTCCCAGGTGGTGTAATGGCTTCGCGGGGCTGCGTTTGCAAGGACAGGC----------------TGGGGCGAGGCT------TGGCTTCGGCCCGGGCCGCTGCTCCGGGCTTTGCGCAGTGTCCACTCTGGTCGCTGGCGAGGGGCATAGCCGGTCGCTGGGCGTTGCTGCC-GAGGCAGGGAGGACAGGCCGGCAGATGGGGTCTCCACGCCTGGCCTGGTCGCTCATTACACCACCCAAGGAACATGCAAAAGGCATTGAAGCTG--AGAGGCACGGTAGCCC--TCCCC-ACCCCAGCCAAGGCCTGCAATT----
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152126235 721 + 156508116 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCAGGCAGGTTGGCCGCGCGGCCGTGCATGCGGCGTGGGTCGACGGTGAAGCGCGGAGCCGACAAAGCGGCCGAAATCGGTAGCAGCTGCTCTAACTCCAGTTCTAGCTGCTCCAGGCGAGCCTCCAGTTTCTTTGCCTTATGCAGCACCTGCAGGTTCTCAATTTGCTGTTCGATGCGGAGGATGTCGGCCTCAGTCATGAGCTCGCCAAAAGGCCCGAGGATGGCGTTGTGTTCGCGGGAGTACCTCCAGCCCTCCGGGGGATA---------------------GCAACAGGAGCTGGCTGCAGTTAGCTAATGCGGGGGGGAAGACAAAAGAGGGGAGGG-GGCGCGTCTCCCTCTGGCCCATCTCCCGCAGCAG-AGCC-GCG---ACCTTTTGCTAGTCCTGGGTGGTGTAATGGCTCCGTTGGGCTGCATTTGCAAGGACTGGCCGC--CTGGCTGGCGGGGAGATTGTACTGCAGTAAGGCTTC-----------CGGCTCCCGATTCTGAGCAGTGGTCACTTTGGTTGCTGGTAGAGGGCACTGGCTGGGGCTG--CGGTGCTGCCTGAGGCAGGGAAAGCAGGCTTGCAGACCGGGTCTCCACGCCTGGCTTGGTCGCTCATTACACCACCCAAAGAACATGCGAAAGGCGTTGAAACTGAGAGAGGCATAAAGGCCT--TCTCTTAACTGATCCACAGCCTGCTATT----
i mm10.chr4                    C 0 I 5
s canFam3.chr5                  28603635 717 -  88915250 CAGCGTGGCCATGCTCTTGAGCAGCGTGGAGATCTTGCTGCACCAGGCAGGCAGGCTGACGGCGCGGCCGTGCATGCGGCGCGGATCGACGGTGAAGCGCGGCGCCGAAAGGGCGGCCGAGATCGGCAGCAGCTGCTCCAACTCCAGCTCCAGCTGCTCCAGGCGCGCCTCCAGCTTCTGCGCCTTGTGCAACACCTGCAGGTTCTCGATTTGCTGCTCGATGCGGAGGATGTCGGCTTCGGTCATGAGCTCGCCGAAGGGCCCGAGGATGGCGTTGTGCGCGCTGGAGTACCTCCAGCCCTCGCGGGGGTA---------------------GCAGCACGAGCTGGCGGCCGTCAGCTAAGGC---GGGGAAGACAAGAGAGGGGAGGGAGGCGCGTCTCCCTCTGGCCCGGTTCCCGCAGCGGCCGCC-GGGGGCGCCATTTGCATGTCCCGGGTGGTGTAATGGCTCCGCGGGACTGTGTTGGCGGGGATGGGCCGAGCTTGGCCGGCA-GGTGGTTACACTGGGGCGAGGCTTCAGCCCAGGCCGCTACTCCGGGCGCTGGCCAGTGTC--CTCTGGTTGCTGGCGGG-----------GTCGTTGGGCGCCGTTGCA-GAGACA--------GGGCGGGCAGACGGAGTCTCCACACCTGGCCAGGTTGCTCATTACACCACCGAAGGAACATGCAAAAGGCGTTGAGGCTG--CGATGCAAGGCTGCCCCTTCCCC-ACCCTATCTCAGGTCCGC-ATCACCT
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              125565 2431 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=6600.000000
s hg38.chr1_KI270714v1_random      20296 1 +     41717 G
s panTro4.chr1_GL389124_random     19887 1 +     50403 G
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224060985 1 + 229942017 G
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027090 1 - 229590362 G
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909087 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211059952 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289490 1 + 130588469 G
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114991647 1 - 155834243 G
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              127996 1 +    135318 G
i tarSyr2.KE930532v1           I 2431 I 228
s micMur1.scaffold_20500            1402 1 -     13323 G
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152126961 1 + 156508116 G
i mm10.chr4                    I 5 I 8
s canFam3.chr5                  28604352 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222974528 3690 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=305126.000000
s hg38.chr1_KI270714v1_random      20297 112 +     41717 --------TGAGGCCTCTCCTC-----CCAGACTC---------ATGACCCCTTCTCCAGCTCC-CCTGTGGCCCAAGCCTT-CCGCTCCCTGTGGTCAATGTTTTATGTGCAGA-ATGAGAGGCCACTCCTCTCTT
s panTro4.chr1_GL389124_random     19888 112 +     50403 --------TGAGGCCTCTCCTC-----CCAGACTC---------ATGACCCCTTCTCCAGCTCC-CCTGTGGCCCAAGCCTT-CCGCTCCCTGTGGTCAATGTTTTATGTGCAGA-ATGAGAGGCCACTCCGCTCTT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224060986 113 + 229942017 --------TGAGGCCTCTCCTC-----CCAGACTC---------ATGACGCCTTCTCCAGCTCC-CCTGTGGCCCAAGCCTTCCCGCTCCCTGTGGTCCATGTTTTCTGTGCAGA-ATGAGAGGCCACTCCGCTCTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027091 113 - 229590362 --------TGAGGCCTCTCGTC-----TCAGACTC---------ATGACCCCTTCTCGAGCTCC-CCTGTGGCCCAAGCTTTCCCGCTCCCTGTGGTCAGTGTTTTATGTGCAGA-ATGAGAGGCCACTATGCTCTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909088 113 + 227556264 --------TGAGGCCTCTCGTC-----TCAGACTC---------ATGACCCCTTCTCGAGCTCC-CCTGTGGCCCAAGCTTTCCCGCTCCCTGTGGTCAGTGTTTTATGTGCAGA-ATGAGAGGCCACTCTGCTCTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211059953 113 - 220367699 --------TGAGGCCTCTCCTC-----CTAGACTC---------ATGACCCCTTCTCGAGCTCC-CCTGTGGCCCAAGCTTTCCCGCTCCCTGTGGTCAGTGTTTTATTTGCAGA-ATGAGAGGCCACTCTGCTCTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289491 113 + 130588469 --------TGAGGCCTCTCCTC-----CCAGACTC---------ATGACCCCTTCTCGAGCTCC-CCTGTGGCCCAAGCCTTCCCGCTCCCTGTGGTCAGTGTTTTATGTGCAGA-ATGAGAGGCCACTCTGCTCTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114991648 112 - 155834243 --------TGAGGCCTCTCCTC-----CCAGACCT---------GCGAC-CCTTCTCAAGCTCC-CCTGTGGTCCAAGCCTTCCTGGTCCCTGTGGGCAATGTTTTAAGTGCAGA-ATGGGAGGCCACTCCACtttt
i calJac3.chr7                 C 0 I 342
s micMur1.scaffold_20500            1403 112 -     13323 --------TGAGGCTTCTGCCC-----CCAGACTG---------CTGACCCCTTCTGAAGCTCC-CCTGTGGCCCCAGCCCTCCCTGT-CCTGTCGCCAGTGTTTTATGTGCTGA-ATGAGAGGCCGCTTGGCTCTT
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152126970 103 + 156508116 --------CGGCGCTCCTCACCTGTCACCAGATCA---------CAGAGCCTTTCTCAGGCT-T-TCTGTGGTCCAGGTCAGGCCTAGTCCAGCTTTCAATGCTTCACGTGCCCAGATGAAA---------------
i mm10.chr4                    I 8 C 0
s canFam3.chr5                  28604353  95 -  88915250 CAAGCCACCAccgccccccccc-----cgccgcccccgccATGGATGACCCCTTCTCAAGCGCCGCCTGCAGCCCCAACTCCCCC----------------------TGCGCACG-CTAGCAG--------------
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              127997 228 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=242915.000000
s hg38.chr1_KI270714v1_random      20409 124 +     41717 AAAGAGGCTGCAGCTGCAGCTTCCACTGAGCTGCCCACCCTTCCCCTCCC----------TTCGTCGTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACCT-----CTG------------ATGTCCAGTTTT
s panTro4.chr1_GL389124_random     20000 124 +     50403 AAAGAGGCTGCAGCTGCAGCTTCCACTGAGCTGCCCACCCTTCCCCTCCC----------TTCGTCCTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACCT-----CTG------------ATGTCCAGTTTT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061099 124 + 229942017 AAAGAGGCTGCAGCTGCAGCTTCCACTGAGCTGCCCACCCTTCCCCTCCC----------TTCGTCCTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACCT-----CTG------------ATGTCCAGTTTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027204 120 - 229590362 AAAGAGGCTACAGCTGCAGCTTCCACTGAGCTGCCCACCCACCACCCC--------------CATCCTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACCT-----CTG------------ATGTCCAGTTTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909201 120 + 227556264 AAAGAGGCTACAGCTGCAGCTTCCACTGAGCTGCCCACCCACCACCCC--------------CATCCTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACTT-----CTG------------ATGTCCAGTTTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060066 120 - 220367699 AAAGAGGCTACAGCTGCAGCTTCCACTGAGCTGCCCACCCACCACCCC--------------CATCCTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACCT-----CTG------------ATGTCCAGTTTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289604 120 + 130588469 AAAGAGGCTACAGCTGCAGCTTCCACTGAGCTGCCCACCCCCCACCCC--------------CATCCTGCTGGAC-A---------------------------GCTGGGCACCGTAAT-----ATTCTCATTTG---CTCACTT-----------TTCTCCACCT-----CTG------------ATGTCCAGTTTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992102 112 - 155834243 AAAGAGGCTACAGCTGTAGCTTCCACTGAGCCACCCACCCTT--------------------CGTCCTGCTGGAC-A---------------------------GCTGGGCATCAT-AT-----ATTCTCATTTG---CTCACTT-----------TTCTCCTCCT-----CTG------------AAGTCCAGTTT-
i calJac3.chr7                 I 342 C 0
s micMur1.scaffold_20500            1515 160 -     13323 AAGGAGGCTCAAGGGTCACCTTCCCCTGGGACTCTCAGCCCTTGCCCT--------------CATCCTACTGGGC-AGATAATACAACACACAGAGCAGGACTTGCCAGGCAC--TTAC-----ATTCTCATTTATTTCTCACTT-----------TTCTCCACCT-----CTGGCCAGCACTCTAGTGCCCAGCTCT
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152127073  58 + 156508116 --------------------------------Gccccccccccccccc--------------ccccc-------------------------------------GT-------------------TTCTC--------TCTATCT-----------CCTTCTCCCT-----CTA------------CCACCTACTT--
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28604448 147 -  88915250 -----------TGCTCTAACGCCAAAAGAGCTGTCAGGCAGTCCCGTACCAGGAATAATAATCAATTTATGGAGCTA---------------------------GCTGTGC-CAGGAATTTCCGAGTTTCATTCATTCCTCACTTGAGTGTGGGGCTTCTCCAGCTGGGAGTTG------------GGGGGCTGTCCT
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              127997 228 +    135318 I
e gorGor3.chr1                 222974528 3690 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=6600.000000
s hg38.chr1_KI270714v1_random      20533 1 +     41717 C
s panTro4.chr1_GL389124_random     20124 1 +     50403 C
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222978218 1 - 229507203 C
i gorGor3.chr1                 I 3690 I 1162
s ponAbe2.chr1                 224061223 1 + 229942017 C
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027324 1 - 229590362 C
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909321 1 + 227556264 C
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060186 1 - 220367699 C
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289724 1 + 130588469 C
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992214 1 - 155834243 C
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            1676 1 -     13323 C
i micMur1.scaffold_20500       I 1 C 0
s mm10.chr4                    152127131 1 + 156508116 C
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28604595 1 -  88915250 C
i canFam3.chr5                 C 0 I 2
e tarSyr2.KE930532v1              127997 228 +    135318 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=15824.000000
s hg38.chr1_KI270714v1_random      20534 5 +     41717 CCCCC-
s panTro4.chr1_GL389124_random     20125 5 +     50403 CCCCC-
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061224 5 + 229942017 CCCCC-
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027325 5 - 229590362 CCCCC-
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909322 5 + 227556264 CCCCC-
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060187 5 - 220367699 CCCCC-
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289725 5 + 130588469 CCCCC-
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992215 5 - 155834243 CCCCC-
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            1677 5 -     13323 CACCC-
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152127132 3 + 156508116 --CCC-
i mm10.chr4                    C 0 I 2
s canFam3.chr5                  28604598 5 -  88915250 -CCTCA
i canFam3.chr5                 I 2 C 0
e tarSyr2.KE930532v1              127997 228 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=778.000000
s hg38.chr1_KI270714v1_random      20539 1 +     41717 T
s panTro4.chr1_GL389124_random     20130 1 +     50403 T
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061229 1 + 229942017 T
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027330 1 - 229590362 T
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909327 1 + 227556264 T
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060192 1 - 220367699 T
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289730 1 + 130588469 T
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992220 1 - 155834243 A
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              128225 1 +    135318 C
i tarSyr2.KE930532v1           I 228 I 2216
s micMur1.scaffold_20500            1682 1 -     13323 C
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152127137 1 + 156508116 T
i mm10.chr4                    I 2 C 0
s canFam3.chr5                  28604603 1 -  88915250 C
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=669547.000000
s hg38.chr1_KI270714v1_random      20540 261 +     41717 GGGCCTGCCATCGCCTCCACAGAGGTCCCT--GATTCATCTTGACCCTATGGGATCCACTCCCCACATAC-AATTAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCGCACCCGGCTCCCCAGTGCTCCAGGAGAAAGTCCGTTCTCTTCTGGGCCTCTGGCCAGGTCTTGGTAACCTGGCCCCCACTGAGGTCTctccagctca--gcga--cccccttcctccaggacagt--cagggccacatccactctcacttccagactgccc
s panTro4.chr1_GL389124_random     20131 261 +     50403 GGGCCTGCCATCGCCTCCACAGAGGTCCCT--GATTCATCTTGACCCTATGGGATCCACTCCCCACACAC-AAATAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCGCACCCGGCTCCCCAGTGCTCCAGGAGAAAGTCCGTTCTCTTCTGGGCCTCTGGCCAGGTCTTGGTAACCTGGCCCCCACTGAGGTCTCTCCAGCTCA--GCGA--CCCCCTTCCTCCAGGACAGT--CAGGGCCACATCCACTCTCACTTCCAGACTGCCC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061230 263 + 229942017 GGGCCTGCCATCGCCTCCACAGAGGTCCCT--GATTCATCTTGACCCTATGCGATCCACTCTCCACATAC-AAATAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCGCACCCGGCTCCCCAGTGCTCCAGGAGAAAGTCCGTTCTCTTCTGGGCctctggccaggtcttggtagtctggcccccattgaggtctctccagctca--gcgacccccccttcctccaggacagt--cagggccacatccgctctcacttccagaccgccc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027331 262 - 229590362 GGGCCTGCCATCACCTCCCCAGAGGTCCCT--GATTCATCCTGACCCTATGCGATCCACTCCCCACATACAAAATAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCCCACCCGGCTCCCCAATGCTCCGGGAGAAAGTCCGTTCTCTTCTGGGCCGCTGGCCAGATCTTGGTAACCTGGcccccactgaggtctctccagctta--gtga--cccccttcctccaggacagt--cagggccacatccactgtcacttccagactgccc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909328 262 + 227556264 GGGCCTGCCATCACCTCCCCAGAGGTCCCT--GATTCATCTTGACCCTATGCGATCCACTCCCCACATACAAAATAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCCCACCCGGCTCCCCAGTGCTCCGGGAGAAAGTCCGTTCTCTTCTGGGCCGCTGGCCAGATCTTGGTAACCTGGCCCCCACTGAGGTCTCTCCAGCTTA--GTGA--CCCCCTTCCTCCAGGACAAT--CAGGGCCACATCCACTGTCACTTCCAGACTGCCC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060193 262 - 220367699 GGGCCTGCCATCACCTCCCCAGAGGTCCCT--GATTCATCTTGACCCTATGCGATCCACTCCCCACATACAAAATAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCCCACCCGGCTCCCCAGTGCTCCGGGAGAAAGTCCGTTCTCTTCTGGGCCGCTGGCCAGATCTTGGTAACCTGGCCCCCACTGAGGTCTCTCCAGCTTA--GCGA--CCCCCTTCCTCCAGGACAGT--CAGGGCCACATCCACTGTCACTTCCAGACTGCCC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289731 262 + 130588469 GGGCCTGCCATCACCTCCCCAGAGGTCCCT--GATTCATCTTGACCCTATGTGATCCACTCCCCACATACAAAATAGGAAGCAGCCTCTTCCCTGCTTAACACTCCCCCTACCTGGCTCCCCAGTGCTCCGGGAGAAAGTCCGTTCTCTTCTGGGCCGCTGGCCAGATTTTGGTAACCTGACCCCCACTGAGGTCTCTCCAGCTTA--GCGA--CCCCCTTCCTCCAGGACAGT--CAGGGCCACATCCACTGTCACTTCCAGACTGCCC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992221 256 - 155834243 GGACCTGTGGTCATCTCCACAGAGG-CTCC--AATTCATTTTGAACCTATGGGATCCAGTCCCCACATAC-AAATAGGAAGCCACCTCTTCCCTGCTTAACACTCCTCCCACTCGGCTCCCCACTCCTCCAGGAGAAAGTCCATTCTCCTCTGTGCTGCTGGCCAGGCCTTGGTAACCTGGCCCCCACC--TTCCCCTCCAGCTCA--GCAA--CTCCCTTCCCCCAGG--AAT--CAGCGTCACATCCACCTTCACTTCCAGACTGCCC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            1683 248 -     13323 GGGGCAGCCCTCACCTCCATACAGGCCTCTGCGATTCACCTTGACCCCGGACAACCCATTCCCCACACAC-AACCGTGATGAAGCCATCCTGCTGCTTAACCGCCCCC--------CTCCCCACTGCTCCAGGAGAAAGTCCACTGTCTTCCAGGCAGCTGGCCAGGCCTTGGTAACCTGACTCCCATT--GCCCTCTCCAGCTCA--GCAC---------CCTGCGGTACAGTCACAAAGCCACAGCCACTATGGTGTCCAGACCACCC
i micMur1.scaffold_20500       C 0 I 789
s mm10.chr4                    152127138 136 + 156508116 -GAACTGCCCCCAGCT-TGCACAGGGACCT--AATCCCTTCCAAGC-------AGCCAGCCCAAACATGT------------------------------------------------------------------------------------------------------GTATCCTGACTCGCACT--AGCCACCACACACTAAGGTGT--CACCC-----------------CAGAGACACATCCGCTGTCACTGCTTGACCAACC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28604604 194 -  88915250 CGGCCTGTCAGTGCATCTACAATGCTTTCT---------------------------------CATAGGC-AAATAGGATAAGGCCACTTCCTCCACTTACACCCTCTC--CCAGGCTCCCAACTGCTGCAGGAGAAA-TTTGTTTTCTTCAA-------AGCCAGacctt-atgatctgatgc-cactgacctctctccagttcc-----a--cccctctcct-----acggt--caagga-------------gcctcc---ttgctc
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=545638.000000
s hg38.chr1_KI270714v1_random      20801 219 +     41717 tgtcccacctgcgg-----ctcttcagccccctctccgcct-ggccacccctcactcgtcttcca----agtgttacctta------gacatcacctcctccttccctaacacaccccccagcccacg--tataaggtggccggtt-agggctgccccagtcccctgcgttc----ccc---attgc-a--gcTGGCTGTGTTGCATCAGCCCAGGTACTTCTCTCCACTGCCACCCACTCTCTCACC
s panTro4.chr1_GL389124_random     20392 219 +     50403 TGTCCCACCTGCGg-----ctcttcagctccctctcctcct-ggccacccctcactcgtcttcca----agtgtcacctta------gacatcacctcctccttccctaacacaccccccagcccaCA--TATAAGGTGGCCGGTT-AGGGCTGCCCCAGTCCCCTGCGTTC----CCC---ATTGC-G--GCTGGCTGTGTTGCATCAGCCCAGATACTTCTCTCCACTGCCACCCACTCTCTCACA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061493 219 + 229942017 tgtcccacctgcgg-----ctcttcagccccctctcctcct-ggccacccctcactcatcttcca----agtgtcacctta------gatatcacctcctccttccctaacacaccccccagcccaca--tataaggtggctagtt-agggctgccccagtgccttgcgttc----ccc---attgc-a--gctggctgtgttgcatcagcccaggtacttctctccactgccacccactctctcaca
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027593 217 - 229590362 tgtcccacctgtgg-----ctcttcagtccactctcctcct-ggccacccctcactcatcttcta----agtctcacctta------gacatcacctcttccttccctaacacaccccccagcccaca--tataaggtggtcattt-agggttgccccagtcccttccgttc----ccc---attgc-a--gctggctgtgttgcatcagcccaggtacttctctccactgccacccactctcaca--
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909590 217 + 227556264 TGTCCCACCTGTGg-----ctcttcagtccactctcctcct-ggccacccctcactcatcttcta----agtctcacctta------gacatcacctcttccttccctaacacatcccccagcccaca--tataaggtggtcattt-agggttgccccagtcccttccgttc----ccc---attgc-a--gctggctgtgttgcatCAGCCCAGGTACTTCTCTCCACTGCCACCCACTCTCACA--
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060455 212 - 220367699 TGTCCCACCTGTGG-----CTCTTCAGTCCACTCTCCTCCT-GGCCACCCCTCACTCATCTTCTA----AGTCTCACCTTA------GACATCACCTCTTCCTTCCCTAACACACCCCCCAGCCCACA--TATAAGGTGGTCAGTT-AGGGTTGCCCCAGTCCCTTCTGTTC----CCC---ATTGC-A--GCTGGCTGTGTTGCATCAGCCCAGGTACTT-----CACTGCCACCCACTCTCACA--
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125289993 215 + 130588469 TGTCCCACCTGTGg-----ctcttcagtccactctcctcct-ggccacccctcactcatcttcta----agtctcacctta------gacatcacctcctccttccctaacacaccccccagcccaca--tataaggtggtcagtt-agggttgccccagtccCTTCCGTTC----CCC---ATTGC-A--GCTGGCTGTGTTTCATCAGCCCAGGTGCTT--CTCCACTGCCACCCACTCTCACA--
i chlSab2.chr20                C 0 I 217
s calJac3.chr7                 114992477 221 - 155834243 TGTCCGGCCTGCTG-----CTCTTCAGCCCACTCTCTTCCT-GGCCACTCCTCGCTTATCTGCCA----CGTCTCA-CTTA------GTCATCACCTTCTCTTTCCCTAACACAGCCCCCAGCCCACG--TATCAGGTGGCCGGTT-AGGGCTGCCCCAGTCCCCCGAGTTC----CCCATTATTGC-A--GCTGGCTGTGTGGCATCAGCCCAGGGACTTCTCTCCACCACCACCCACTCTCCCACA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152127274 238 + 156508116 CATCCTTCTTGCCGCCTTTCTCCTCACCGCACACTCTTCCC-AATGCCCTCTTGTGTTCCTCCCATTCCCATCTCACCTTGTGCTACAACATCACCACCCTCTACCCTGTCAC-CACCCCAACCCATAACTGTCAACCGGTTGGTTGATTGGTGCCTAAGTCTGCTGTGTTCCTGACCC---ACTCCAA--GTTGTCAGTCTCACAT---CTTAGGGACACTTACTTGCTTGTacacacacacacaca
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28604798 200 -  88915250 ----------------------tttgccctactcggttcccaggccacctcttgctcatctccca----agtct-accttg------gacatcacttcctccttccctaacactgccctcagccca----aagaggatggtgggtttaaggctgccccagacctctgcatgc----cct---atcac-agtgccacctgtcctgtgacagcccaggtactggcctccaaaact-caggctctcaca--
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=59274.000000
s hg38.chr1_KI270714v1_random      21020 26 +     41717 CTGCCCCATTTTGTGTGCTTGGTGAC
s panTro4.chr1_GL389124_random     20611 26 +     50403 CTGCCCCATTTTGTGTGCTTGGTGAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061712 26 + 229942017 ctgccccattttgtgtgcttggtgac
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027810 26 - 229590362 ctgccccattttttgtgctcggtgac
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909807 26 + 227556264 CTGCCCCATTTTTTGTGCTCGGTGAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060667 26 - 220367699 CTGCCCCATTTTTTGTGCTCAGTGAC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125290425 26 + 130588469 CTGCCCCATTTTTTGTGCTCGGTGAC
i chlSab2.chr20                I 217 C 0
s calJac3.chr7                 114992698 26 - 155834243 CTGCCCCATTTTGAGTTCTTGGTGAC
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152127512  1 + 156508116 -------------------------c
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28604998 26 -  88915250 ttatcttgttctgtatctttgggggc
i canFam3.chr5                 C 0 I 63
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=35724.000000
s hg38.chr1_KI270714v1_random      21046 13 +     41717 TCGCACACATGTC
s panTro4.chr1_GL389124_random     20637 13 +     50403 TCGCACACATGTC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061738 13 + 229942017 tcgcacacatgtc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027836 13 - 229590362 tcgcacacatgtc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909833 13 + 227556264 TCGCACACATGTC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060693 13 - 220367699 TCGCACACATGTC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125290451 13 + 130588469 TCACACACATGGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992724 13 - 155834243 TTGCACACATGTC
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152127513 13 + 156508116 acacacacacacC
i mm10.chr4                    C 0 C 0
e canFam3.chr5                  28605024 63 -  88915250 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=286506.000000
s hg38.chr1_KI270714v1_random      21059 91 +     41717 C---GCAGCCACCTT-AGAGCAGGCCTTGATATGTTCACCATGAATCCCCAGAGGCTACA--AGC-GTGTGGGGCACATAAATGGCACTCGGGggcca
s panTro4.chr1_GL389124_random     20650 91 +     50403 C---GCAGCCACCTT-AGAGCAGGCCTtgatatgttcaccatgaatccccagaggctaca--agc-gtgtggggcacataaatggcactcgggggcca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061751 93 + 229942017 c---gcagacacctt-agagcaggcctggatatgttcaccatgaatccccagaggctataacagt-gtgtggggcacataaatggcactcgggggcca
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027849 93 - 229590362 c---gcagccacctt-agagcaggccttgatatattcaccatgaatccccagaggctacaacagt-gtgtggggcacataaatggcactcgggggcca
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909846 93 + 227556264 C---GCAGCCACCTT-AGAGCAGGCCTTGATATGTTCACCATGAATCCCCAGAGGCTACAACAGT-GTGTGGGGCACATAAATGGCACTCGGGggcca
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060706 93 - 220367699 C---GCAGCCACCTT-AGAGCAGGCCTTGATATGTTCACCATGAATCCCCAGAGGCTACAACAGT-GTGTGGGGCACATAAATGGCACtcgggggcca
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125290464 93 + 130588469 C---GCAGCCACCTT-AGAGCAGGCCTtgatatgttcaccatgaatccccagaggctacaacagt-gtgtggggcacataaatggcactcgggggcca
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992737 93 - 155834243 C---ACAGCCACCTT-TGAGCAGGCCTtgatatgttcaccatgaatccccagaggctataacagt-gtgtgggacacataaacggtactcGGGAgcca
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152127526 92 + 156508116 CTCTACAGCCACCTTGATAGCAAGCATTGCTATATTCATTGTGAACCCTCAGAGGACACAACCTCAGTACAGTTCACA------GCAGTCGGGGAACA
i mm10.chr4                    C 0 I 379
s canFam3.chr5                  28605087 90 -  88915250 c---gcggccacctt--gaaaaggccctgacacattcattatgaatccccagaggctacaacagt-gtatg--tcacatacatagcacccaagaaaca
i canFam3.chr5                 I 63 C 0
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=11171.000000
s hg38.chr1_KI270714v1_random      21150 5 +     41717 ggcgt
s panTro4.chr1_GL389124_random     20741 5 +     50403 ggcgt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061844 5 + 229942017 ggcgt
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027942 5 - 229590362 ggcgt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909939 5 + 227556264 ggcgt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060799 5 - 220367699 ggcat
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125290557 5 + 130588469 ggtgt
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992830 5 - 155834243 agcgc
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605177 5 -  88915250 tgtgt
i canFam3.chr5                 C 0 I 62
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=823465.000000
s hg38.chr1_KI270714v1_random      21155 385 +     41717 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggc-agatcacttgaggccaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaagaatacaaaaattagccgggcatggttggcgggcatctgtagtcccagctactcgggaggctgaggcgggagaatcacttgaacccaggaggtggaggttgcagtgagtcaagatcgcaccactgtactccagcctcagtgacagagtgagaccctgtctcaaa---------------------------aaaataaa-aaataataaaaataaaTGGCATTCGGGGAATAGTTTTTGGATGAATGGAAGGCAACTCatcctgccagctggtgctgatcagctcaccttacagagaagga
s panTro4.chr1_GL389124_random     20746 382 +     50403 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggc-agatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaagaatacaaaaattagccaggcatggttggcaggcatctgtagtcccagctactcgggaggctgaggcgggagaatcacttgaacccaggaggtggaggttgcagtgagtcaagattgcaccactgtactccagcctcagtgacagagtgagaccctgtctcaaa---------------------------aaaataaa-aaataa---aaataaatggcattcggggaatagttgttggatgaatggaAGGCAACTCatcctgccagctggtgctgatcagcccaccttacagagaagga
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224061849 387 + 229942017 ggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcgggatcacttgaggccaggagttcgagaccagcctggccaacgtggtgaaaccccatctctgctgagaatacaaaaattagctgggtgtggttggcgggcatctgtagtcccagctactcgtgaggctgaggcgggagaatcgcttgaacccaggaggtggaggttgcagtgagtcaagatcgcaccactgtactccagcctcagtaacaaagtgattccctgtctcaaa---------------------------aaaataaataaaaaataaaaataaatggcatttggggaatagttgttggatgaatgaaAGGCAACTCatcctgccagctggtgctgatcagcccaccttacagagaagga
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220027947 359 - 229590362 ggtagctcacgcctgtaatcccagcactgtgggaggccaaggcaggt-ggaacacttgaggccaggagttcgagaccagcctggcca---------------atctctactaagaatacaaaaattagccgggcatggttggtgggcatctgtagtcccagctactcgggaggctgaagcgggaggatcgcttgaacccaggaggcggaggttgcagagagtcgagatcacaccactgtactccagcctcaatgacagagtgagaccctgtctcaaa------------------------------------aaataa---aaataaatggcatttggggaacagttgttggatgaatgaaAGGCAACTCatcctgccagcgggtgctgatcagcccaccttacagagaagga
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221909944 359 + 227556264 ggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggt-ggatcacttgaggccaggagttcgagaccagcctggcca---------------atctctactaagaatacaaaaattagccgggcatggttggtgggcatctgtagtcccagctactcgggaggctgaagcgggaggatcgcttgaacccaggaggcggaggttgcagtgagtcgagatcacaccactgtactccagcctcaatgacagagtgagaccctgtctcaaa------------------------------------aaataa---aaataaaTGGCATTTGGGGAACAGTTGTTGGATGAATGAAAGGCAACTCatcctgccagcgggtgctgatcagcccaccttacagagaagga
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211060804 359 - 220367699 ggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggt-ggatcacttgaggccaggagttcgagaccagcctggcca---------------atctctactaagaatacaaaaattagccgggcatggttggtgggcatctgtagtcccagctactggggaggctgaagcgggaggatcgcttgaacccaggaggcggaggttgcagtgagttgagatcacaccactgtactccagcctcaatgacagagtgagaccctgtctcaaa------------------------------------aaataa---aaataaatggcatttggGGAAcagttgttggatgaatgaaaggCAACTCATCCTGCCAGCGGGTGCTGATCAGCCCAccttacagagaagga
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125290562 359 + 130588469 ggtggctcaggcctgtgatcccagcactttgggaggccgaggcaggt-ggatcacttgaggccaggagttcgagaccagcctggcca---------------atctctactaagaatacaaaaattagccgggcatggttggtgggcatctgtagtcccagctactcgggaggctgaagcgggaggatcgcttgaacccaggaggcggaggttgcagtgagtcgagatcacaccactgtactccagcctcaatgacagagtgagaccctgtctcaaa------------------------------------aaataa---aaatagatggcatttggggaacagttgttggatgaatgaaAGGCAACTCatcctgccagcgggtgctgatcagcccaccttacagagaagga
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114992835 406 - 155834243 ggtggctcatgcctgtaatcccagcactgtggaaggccaaggcaggt-ggatcacttgaagtcaggagttcgagaccagcctggccaacatggagaaaccccgtctgtactacaaatacaaaaattagctgggcatga-tggcatgcacctgtagtcccagctactcaggaggctgaggtgggagaatcgcttgaacctggaaggcggaggtttcagtgagcagagattgcaccactgtactctagcctcactgacagagtgag--cttctctcaaaaacaacaacaacaacaaaaaagaaaaCAAAACCAA-AAATAA---AAAGAAATGGCACTGGTGGAACAGCTGTAGAATGAATAAAAGacaactcatcctgctggctggtgctcatcagcccaccttacagagaagga
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e canFam3.chr5                  28605182  62 -  88915250 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=414602.000000
s hg38.chr1_KI270714v1_random      21540 159 +     41717 aactgaggctggatgaggctcagtatcggcagctggaaggcggcagcgcagcaatggagcccaggtccctaagactgagaccaaagctctcttggctactcagtgtggtccttggaccagtgtcatcagcagcctcacccaggagctggctagaaatgc
s panTro4.chr1_GL389124_random     21128 159 +     50403 aactgaggctggacgaggctcagtatcagcagctgggaggcggcagcgcagcaatggagcccaggtccctaagactgagaccaaagctctcttggctactcagtgtggtccttggaccagcatcatcagcagcctcacccaggagctggctagaaatgc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062236 159 + 229942017 aactgaggctggatgaggctcagtatcggcagctggaaggcggcagcgcagccatggagcccaggtccctaagactgagaccaaagccctcttggctactcagtatggtccttggaccagcatcatcagcagcctcacccaggagctggctagaaatgc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220028306 158 - 229590362 aactgaggctggatgaggctcagtattggcagctggaaggtggcagtgcagcaatagagcccatgtccctaagactgagaccaaagcccTCTTGGCTATGCagtgtggtccttggaccagcgtcatcagcagcctcacccaggagctggcta-aaatgt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221910303 158 + 227556264 aactgaggctggatgaggctcagtattggcagctggaaggtggcagtgcagcaatagagcccatgtccctaagactgagaccaaagcccTCTTGGCTATGCagtgtggtccttggaccagcgtcatcagcagcctcacccaggagctggcta-aaatgc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061163 158 - 220367699 aactgaggctggatgAGGCTCAGTATTGGCAGCTGGAAGGTGGCAGTGCAGCAATAGAGCCCATGTCCCTAAGACTGAGACCAAAGCCCTCTTGGCTATGCAGTGTGGTCCTTGGACCAGCGTCATCAGCAGCCTCACCCAGGAGCTGGCTA-AAATGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125290921 158 + 130588469 aactgaggttggatgaggctcagtattggcagctggaaagtggcagtgcagcaatagagcccatgtccctaagactgagaccaaagccctcttggctattcagtgtggtccttggaccagcgtcatcagcagcctcacccaggagctggcta-aaatgc
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993241 157 - 155834243 aac--aggctggatgaagttcagtgttggcagctggaaggcatcagcgcagcgatagagcccaggtccctaagaccgagaccaaagccctcttggctattcagtgtggtccctggaccagcgtcatcagcagtctcacccaggagctggctggaaatgc
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605244 146 -  88915250 aactgaggctggctgagtctcggtatcagtggctggaaagtggccatgcaggggcagggcccaggctagtctgttcgcaaccaaaagcctgtCACCTACTGCgtgtggtccctggaccagcacagtcaggagctt--cctagaagcat-----------
i canFam3.chr5                 I 62 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222978219 1162 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=2997.000000
s hg38.chr1_KI270714v1_random      21699 1 +     41717 a
s panTro4.chr1_GL389124_random     21287 1 +     50403 a
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222979381 1 - 229507203 a
i gorGor3.chr1                 I 1162 I 2574
s ponAbe2.chr1                 224062395 1 + 229942017 a
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220028464 1 - 229590362 a
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221910461 1 + 227556264 a
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061321 1 - 220367699 A
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291079 1 + 130588469 a
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993398 1 - 155834243 a
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605390 1 -  88915250 g
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=594663.000000
s hg38.chr1_KI270714v1_random      21700 247 +     41717 gaacctcagccctgcccagacctcctgaatccgaacaggccttttaaccagatcccaggtg--ctgggcaggtgaaggagagtctgagaaaggctgCTGTCTCACT-CCAAGGACAAGCTGCTGGGGGTG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGTCGTGCCACCCTGATTTCCCTAAAGAAGATggccgggcatggtggctcatgcctgtaatcccagcc-----------------------------------------------------ctggccaacatggtgaaacccc
s panTro4.chr1_GL389124_random     21288 248 +     50403 gaacctcagccctgcccagacctcctgaatccgaacaggccttttaaccagatcccaggtg--ctgggcaggtgaaggagagtctgagaaaggctgCTGTCTCACTTCCAAGGACAAGCTGCTGGGGGTG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGTCGTGCCACCCTGCTTTCCCTAAGGAAAATggccgggcacggtggctcatgcctgtaatcccagcc-----------------------------------------------------ctggccaacatggtgaaacccc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062396 248 + 229942017 gagcctcagccctgcccagacctcctgaatccgaacaggccttttaaccagatcccaggtg--ctgggcaggtgaaggagagtctgagaaaggctgctgtctcacttccaaggacaagctgctGGGGGTG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGTGGTGCCACCCTGCTTTCCCTAAAGAAAATGGCCGGGCACGGTGGCTCATGCCTGTAATCccagcc-----------------------------------------------------ctggccaacacggtgaaacccc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220028465 248 - 229590362 gagcctcagcaccgcccagacctcctgaatctgaacaggccttttaactagatcccaggtg--ctaggcacgtgagggagagtctgagaaaggctgCTGTCTCACTTCCAAGGACAGGCTGCTGGGAATG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGGCCTGCTACCCTGCTTTCCACAAAGAAAATGGCCAGGCACAGTGGCTCATGCCTGTAATCccagca-----------------------------------------------------ctggccaacatggtgaaacccc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221910462 248 + 227556264 gagcctcagcaccgcccagacctcctgaatctgaacaggccttttaactagatcccaggtg--ctgggcacgtgagggagagtctgagaaaggctgCTGTCTCACTTCCAAGGACAGGCTGCTGGGAGTG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGGCCTGCTACCCTGCTTTCCACAAAGAAAATGGCCAGGCACAGTGGCTCATGCCTGTAATCccagca-----------------------------------------------------ctggccaacatggtgaaacccc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061322 248 - 220367699 GAGCCTCAGCACCGCCCAGACCTCCTGAATCTGAACAGGCCTTTTAACTAGATCCCAGGTG--CTGGGCACGTGAGGGAGAGTCTGAGAAAGGCTGCTGTCTCACTTCCAAGGACAGGCTGCTGGGAGTG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGGCCTGCCACCCTgctttccacaaagaaaatggccaggcacagtggctcatgcctgtaatcccagca-----------------------------------------------------ctggccaacatggtgaaacccc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291080 248 + 130588469 gagcctcagcaccgcccagacctcctgaatctgaacaggccttttaaccagatcccaggtg--ctgggcaggtgagggagagtctgagaaaggctgCTGTCTCACTTCCAAGGACAGGCTGCTGGGAGTG------TGTGTGGAGACTGGGACAAGCCCCAAAC-GGGGGCCTGCCACCCTGCTTTCCACAAAGAAAATGGCCGGGCACAGTGGCTCATGCCTGTAATCccagca-----------------------------------------------------ctggccaacatggtgaaacccc
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993399 298 - 155834243 gagcctcagccccgcccagaccgccggaatccaaaaaggccttttaaccagctcccagggg--ctaggcaggggaaggagagtctgagaaaggctgCTGTCTCACTTCCAAGGACAGGCTGCTGGGGGTG------TGTTTGGAGACTGGGACAAGCCCCAAATAGGGGTCCTGTCACCCTGCTTTCCCCGAAG----Tggccaggctcggtggctcacacctgtaatcccagcactttgggaggttgaggcgggggcatcacctgaggtcaggagtttaagaccagcctggccaacatggtgaagaccc
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605391 199 -  88915250 ggatctcggtcccacccagggctcctgaatcagaataggcatttttacaagatctcaagCAACCTGAGC---TGCCTTGGAGTTGGATGAACTTTGCCATCTTACT--AAAGGACATGCTACTGGAGGTGGGGGTTGGGGTGGAGACTGGGAACATTCCCA----G--------------------------------TGGACAGGCA-GATCGTCCAGTCCTGCTATCTGCCCC-----------------------------------------------------C----------------ACCCC
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=242169.000000
s hg38.chr1_KI270714v1_random      21947 106 +     41717 gtctctaataaaaatacaaaaaaattagctgggcgtggtggcatgcgcctgtaatcccagctacctgagaggctgaggcaggagaatcat----------ttgaacccaggagaca
s panTro4.chr1_GL389124_random     21536 106 +     50403 gtctctaataaaaatacaaaaaaattagctgggcgtggtggcatgcgcctataatcccagctacctgagaggctgaggcaggagaatcat----------ttgaacccaggagata
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062644 106 + 229942017 gtctctaataaaaatacaaaaaaattagctgggcgtggtggcatgcgcctgtaatcccagctacctgggaggctgaggcaggagaatcat----------ttgaacccgggaggcg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220028713 116 - 229590362 atctctaataaaaatacaaaaaaattagctgggcatggtggcacgcgcctgtaatcccagctacctgggaggctgaggcaggagaatcacgagcatgggattgaacccgggaggcg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221910710 116 + 227556264 atctctaataaaaatacaaaaaaattagctgggcatggtggcacgcgcctgtaatcccagctacctgggaggctgaggcaggagaatcacgagcatgggattgaacccgggaggcg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061570 116 - 220367699 atctctaataaaaatacaaaaaaattagctgggcatggtggcacgcgcctgtaatcccagctacctgggaggctgaggcaggagaatcacgagCATgggattgaacccgggaggcg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291328 116 + 130588469 atctctaataaaaatacaaaaaaattagctgggcatggtggcctgtgcctgtaatcccagctacctgggaggctgaggcaggagaatcaggagcatgggattgaacccgggaggcg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993697 106 - 155834243 atctctactaaaaatatttaaaaattagctgggtgtggtggcatgtgtctgtactcccagctatccaggaagctgaggcaggagaatctc----------ttgaaaccaggaggca
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e canFam3.chr5                  28605590   0 -  88915250 C
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=53856.000000
s hg38.chr1_KI270714v1_random      22053 21 +     41717 aaggttgcagtgagccgagat
s panTro4.chr1_GL389124_random     21642 21 +     50403 aagattgcagtgagccgagat
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062750 21 + 229942017 aaggttgcagtgagccgagat
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220028829 21 - 229590362 aaggttgcagtgagccgagat
i rheMac3.chr1                 C 0 I 144
s macFas5.chr1                 221910826 21 + 227556264 aaggttgcagtgagccgagat
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061686 21 - 220367699 aaggttgcagtgagccgagat
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291444 21 + 130588469 aaggttgcagtgagccgagat
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993803 21 - 155834243 gaggttgcagtgaaccaagat
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605590 16 -  88915250 AAGGTTACGG-GAGCTG----
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=46378.000000
s hg38.chr1_KI270714v1_random      22074 48 +     41717 catgccactgcactccagcctgggcgacagagcaagcctctgtctca-c
s panTro4.chr1_GL389124_random     21663 48 +     50403 cgcgccactgcactccagcctgggcgacagagcaagactctgtctca-c
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062771 46 + 229942017 cgcgccactgcactccagcctgggcgacagagcaaggctctgtctc---
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221910847 45 + 227556264 cgtgccactgcacaacagtctgggcgacagagcga--ctctgtctca--
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061707 45 - 220367699 cgtgccactgcacaacagtctgggcaacagagcga--ctctgtctca--
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291465 46 + 130588469 cgtgccactgcacaacagcctgggcgacagagtaa--ctctgtctcaa-
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993824 47 - 155834243 cataccactgcactccagtttgggtgatagagtgagactccaattca--
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605606  8 -  88915250 ------GCTGCAGT-----------------------------------
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e rheMac3.chr1                 220028850 144 - 229590362 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=28972.000000
s hg38.chr1_KI270714v1_random      22122 34 +     41717 gaaaaagaaaaaaagaaaaagaaagaaagaaaga
s panTro4.chr1_GL389124_random     21711 34 +     50403 gaaaaagaaaaaaagaaaaagaaagaaaGAAAGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062817 22 + 229942017 ------------aagaaaaaaaaaaaaagaaaga
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220028994 33 - 229590362 gaaaaagaaaggaagaaaaagaaagaaaaagaa-
i rheMac3.chr1                 I 144 C 0
s macFas5.chr1                 221910892 33 + 227556264 -aaaaaagaagaaaagaaaaggaagaaaaGAAAG
i macFas5.chr1                 C 0 I 293
s papAnu2.chr1                 211061752 33 - 220367699 -aaaaaagaagaaaagaaaagaaaaggaagaaaa
i papAnu2.chr1                 C 0 I 112
s chlSab2.chr20                125291511 32 + 130588469 --aaaaagaagaaaagaaaaggaagaaaaaaaga
i chlSab2.chr20                C 0 I 87
s calJac3.chr7                 114993871 32 - 155834243 -aaaaaataataacaaaaataaaaaagaaaAAA-
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605614  6 -  88915250 --------------------GGAAGG--------
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=9353.000000
s hg38.chr1_KI270714v1_random      22156 5 +     41717 aaATA
s panTro4.chr1_GL389124_random     21745 5 +     50403 AAATA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062839 5 + 229942017 aaaTG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220029027 5 - 229590362 aaaCG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221911218 5 + 227556264 aaaCG
i macFas5.chr1                 I 293 C 0
s papAnu2.chr1                 211061897 5 - 220367699 aaacg
i papAnu2.chr1                 I 112 C 0
s chlSab2.chr20                125291630 5 + 130588469 aaacg
i chlSab2.chr20                I 87 C 0
s calJac3.chr7                 114993903 5 - 155834243 AAATG
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28605620 5 -  88915250 GACCA
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e micMur1.scaffold_20500            1931 789 -     13323 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=42113.000000
s hg38.chr1_KI270714v1_random      22161 24 +     41717 GGAGGTCCCGAGGTTGGTGTTG--GG
s panTro4.chr1_GL389124_random     21750 24 +     50403 GGAGGTCCCAAGGTTGGTGTTG--GG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062844 24 + 229942017 GGAGGTCCCGAGGTTGGGGTTG--GG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220029032 24 - 229590362 GAAGGCCCCGAGGTTGGGGTTG--GG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221911223 24 + 227556264 GGAGGCCCCGAGGTTGGGGTTG--GG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061902 24 - 220367699 ggAGGCCCCGAGGTTGGGGTTG--GG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291635 24 + 130588469 agagGCCCCGAGGTTGGGGTTG--GG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993908 17 - 155834243 GGAGGTCCCAA-------GTTG--GA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            2720 26 -     13323 GGGAGTGCCAGGGCTGGGGCAGGCGG
i micMur1.scaffold_20500       I 789 C 0
s canFam3.chr5                  28605625  9 -  88915250 --------GCAGGCTGG---------
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152127618 379 + 156508116 I
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=4095661.000000
s hg38.chr1_KI270714v1_random      22185 1030 +     41717 GGTGGCGTGGGGGATGGGCTGTGCATCCAGATGCAGACCCCAGGGCTCCCTGGGCA-CCCCGCCCCACCCACTTtccacctctgctcctcctcctcctACATCTTCAGCTGCATCTTGCCCACCATCACCTGGCGCTTCCACTCGGGCTTGGGACGGCCCTGCTCATCGTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCACCCCCGGCGCAGGAGTAGTGGGCGGCACCGGAACCAAGCTTCCGTTGAGCAGCAGCTGAAACCCCGCAGCTGGCGGTGTGGGGCTCTGGACTGGTAACAGTGCAGGTGACACAGACGGCAGCGGCGAATCGGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCTGGTGGCCTAGGGCCAGGGAAGCCGGGTCGCAGGCTCCTGCTGGGCCC---GCCTACCTGGAAGGCCGGCTGCCTGCTGCCTGAGAACACTGTGGTCAGCCCCTTGCTCTGTGGCGTCGGCTTCAGGCTCTTGCCTGCCTTAATCTCAGCCAGTAGCTCTGAGTTGTCGCCCATCGGGAACATCACATTGAAAGACTTGGTGCCTATGCAGAGGCAGGAGATGAGGCACTGGCCAG-GGTGGGGCTGCATCCCTGCCACCCCTCACCTGCCCCTCTGCAGCCCCCTTCCCAACCCAAGATTGGATGGGTGCCCATCCTCGGGGCCAGCGGGCAGCTCTCCAGATCCCAGG-TCCCGCAGGCAGCTTTCAGGGCCCCCAGAGGCAGGCCCTTGGTTCCCCGACTGTGGCAACCCCACCATCCTCCCCCACCCTACTCACGGGATGGAGGGCCCCTGCCTGGAGACCCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATATTCCTGCCCAGC-CACTGACTGCCCAGCCCCAAA-----ACAC-TACCTGG-AATCAGCCACCGGACCTTTGTCCCAGGTTTCCTGGCTCAGCCCGGCT-GGGTGGAGCCTCCCTCTGGCCCTCTCCCTATATCAGCAAAGCCTCAGTGACCCTTGAGCTGAGTCAATTGGGGCCTCCATGG
s panTro4.chr1_GL389124_random     21774 1027 +     50403 GGTGGCATGGGGGATGGGCTGTGCATCCAGATGCAGACCCCAGGGCTCCCTGGGCA-CCCCGCCCCAACCACTTTCCACCTCTGCTCCTCCTCCT---ACATCTTCAGCTGCATCTTGCCCACCATCACCTGGCGCTTCCACTCGGGCTTGGGACGGCCCTGCTCATCGTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCACCCCCGGCTCAGGAGTAGTGGGCGGCACCGGAACCAAGCTTCCGTTGAGCAGCGGCTGAAACCCCGCAGCTGGCGGTGTGGGGCTCCGGACTGGTGACAGTGCAGGTGACACAGACGGCAGCGGCGAATTGGGCTGCAGGGAAAAGCGGTGGGGCTGAGCGCCTGGTGGCCTAGGGCCAGGGAAGCCGGGTCGCAGGCTCCTGCTGGGCCC---GCCTACCTGGAAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGCCCCTTGCTCTGCGGCATCGGCTTCATACTCTTGCCTGACTTAATCTCAGCCAGTAGCTCCGAGTTGTCGCCCATCGGGAACATCATGTTGAAAGACTTGGTGCCTATGCGGAGGCAGGAGATGAGGCACTGGCCAG-GGTGGGGCTGCATCCCTGCCACCCCTCACCTGCCCCTCTGCAGCCCCCTTCCCAAGCCAAGATTGGATGGGTGCCCATCCTCAGGGCCAGCGGGCAGCTCTCCAGATCCCAGG-TCCAGCAGGCAGCTTTCAGGGCCCCCAGAGGCAGGCCCTTGGTTCTCCGACTGTGGCAACCCCACCATCCTCCCCCACCCTATTCACGGGATGGAGGGCCCCTGCCTGGAGATCCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATATTCCTGCCCAGC-CACTGACTGCCCAGCTCCAAA-----ACAC-TACCTGG-AATCAGCCACCGGACTTTTGTCCCAGGTTTCCTGGCTCAGCCTGGCT-GGGTGGAGCCTCCCTCTGGCCCTCTCCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTGAGTCAATTGGGGCCTCCATGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224062868 1030 + 229942017 GGTGGCGTGGGGGATGGGCTGTGCATCCAAATGCAGACCCCAGGGCTCCCTGGGCA-CCCTGCCCCACCCACCTTCCGCCTATGCTCCTCCTCCTCCTGCATCTTCAGCTGCAGCTTGCGCACCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCATCGTGTGTGGGGATGAGCGCCTCCACATCCAGCTGCACTCCCGGCGCAGGAGTAGTGGGCGGCTCCGGAACCAAGTTTCCATTGAGCAGAGGCTGAAACCCTGCAGCTGGCGGTGTGGGGCTCCGGACTGGTGACAGTGCAGGTGACACAGATGCCAGCGGCGAATCGGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCCGGTGGCCTAGGGCCAGGGAAGCCGGGTCGCAGGCTCCTGCTGGGCCC---GCCTACCTGGAAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGCCCCTTGCTCTGCGGCGTCGGCTTCAGGCTCTTGCCTGCCTTAATCTCAGCCAGTAGCTCCGAGTTGTCGCCCGTCGGGGACATCATGTTGAAAGATTTGGTGCCTATGCAGAGGCAGGAGATGAGGCACTGGCCAG-GGTGGGGCTGCATCCCCGCCACCCCTCTCCCGCCCCTCTGCAGCCCCGTTCCCAAGCCAAGATTGGATGGGTGCCCATCCTCGGGGCCAGTGGGCAGCTCTCCAGATCCCAGG-TCCCGCAGGCAGCTTTCAGGGTCCCCAGAGGTGGGCCCTTGGTTCCCCGACTGTGGCAACCCCACCATCCT-CCCCACCCTACTCACGGGATGCAGGGCCCCTGCCTGGAGGCCCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATGTCCCCGCCCAGC-CACTGACTGCCCAGCTCCAAA-----ACAC-TACCTGG-AATCAGCCACCCGACCTTTGTCCCGGGTTCCCTGGCTCAGCCCGGCTGGGGTGGAGCCTCCCTCTGGCCCTCTCCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTGAGTCAATTGGGGCCTCCATGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220029056 1030 - 229590362 AATGGCATGGGGGATGGGCTGTGCATCCAGATGCAGACCCCAGGGCTCCCTGGGCA-CCCCGCCCCACCCACCTTCCGCCTCTGCTCCTCCTCCTCCTGCATCTTCAGCTGCAGCTTGCGCACCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCATCGTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCACGCCCGGCGCAGGAGTAGTGGGCGGCACCGGAACCAAGCTTCCATTGAGCAGCGGCTGAAACCCCGCAGCTGGCGGTGTGGGGCTCCGGACTGGTGACAGTGCAGGTGACACAGACGGCAGCGGTGAATCGGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCCGGTGGCCTGGGGCCAGGGAAGCCGGGTCGCAGGCTCCTGCCAGGCCC---GCCTACCTGGAAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGTCCCTTGCTTTGTGGCGTAGGCTTCAGGCTCTTGCCAGCCTTAATCTCAGCCAGTAGCTCCGAGTTGTCGCCCGTCGGGGACATCATGTTGAAAGACTTGGTGCCTATGCAGAGGCAGGAGATGAGGCACTGGCCAG-GGTGGGGCTGCATCCCTGCCACCCCTCACCCGCCCCTCTGCAGCCCCCTTCCCAAGCCAAGATTGGCTGGGTGCCCATCCTCGGCCCCAGCAGGCAGCTCTCCAGATCCCAGG-TCCCACAGGCTGCTTTCAGGGCCCCCAGAGGCGGGCCCTTGGTTCCCCGACTGTGACAACCCCACTATCCT-CCCCACCCTACTCACGGGGTGGAGGGCCCCCGCCTGGAGGACCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATGTCCCCGCCCAGC-CACTGACTGCCCAGCTCCAAA-----ACAA-TACCTGG-AATCAGCCACCCGACCTTTGTCCCAGGTTCCCTGGCTCAGCCCGGCTGGGGTGGAGCCTCCCTCTGGCCCTCTCCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTGAGTCAATTGGGGCCTCCATGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221911247 1030 + 227556264 AATGGCATGGGGGATGGGCTGTGCATCCAGATGCAGACCCCAGGGCTCCCTGGGCA-CCCCGCCCCACCCACCTtccgcctctgctcctcctcctcctGCATCTTCAGCTGCAGCTTGCGCACCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCATCGTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCACGCCCGGCGCAGGAGTAGTGGGCGGCACCGGAACCAAGCTTCCATTGAGCAGCGGCTGAAACCCCGCAGCTGGCGGTGTGGGGCTCCGGACTGGTGACAGTGCAGGTGACACAGACGGCAGCGGTGAATCGGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCCAGTGGCCTGGGGCCAGGGAAGCCGGGTCGCAGGCTCCTGCCAGGCCC---GCCTACCTGGAAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGTCCCTTGCTTTGCGGCGTAGGCTTCAGGCTCTTGCCAGCCTTAATCTCAGCCAGTAGCTCCGAGTTGTCGCCCGTCGGGGACATCATGTTGAAAGACTTGGTGCCTATGCAGAGGCAGGAGATGAGGCACTGGCCAG-GGTGGGGCTGCATCCCTGCCACCCCTCACCCGCCCCTCTGCAGCCCCCTTCCCAAGCCAAGATTGGCTGGGTGCCCATCCTCGGCCCCAGCAGGCAGCTCTCCAGATCCCAGG-TCCCACAGGCTGCTTTCAGGGCCCCCAGAGGCGGGCCCTTGGTTCCCCGACTGTGACAACCCCACTATCCT-CCCCACCCTACTCACGGGGTGGAGGGCCCCCGCCTGGAGGACCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATGTCCCCGCCCAGC-CACTGACTGCCCAGCTCCAAA-----ACAA-TACCTGG-AATCAGCCACCCGACCTTTGTCCCAGGTTCCCTGGCTCAGCCCGGCTGGGGTGGAGCCTCCCTCTGGCCCTCTCCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTGAGTCAATTGGGGCCTCCATGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211061926 1030 - 220367699 AATGGCATGGGGGATGGGCTGTGCATCCAGATGCAGACCCCAGGGCTTCCTGGGCA-CCCCGCCCCACCCACCTTCCgcctctgctcctcctcctcctgcatcTTCAGCTGCAGCTTGCGCACCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCATCGTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCACGCCGGGCGCAGGAGTAGTGGGCGGCACCGGAACCAAGCTTCCATTGAGCATCGGCTGAAACCCCGCAGCTGGCGGTGTGGGGCTCCGGACTGGTGACAGTGCAGGTGACACAGATGGCAGCGGTGAATCGGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCCGGTGGCCTGGGGCCAGGGAAGCCGGGTCGCAGGCTCCTGCCAGGCCC---GCCTACCTGGAAGGCCGGCTGCCCACTGCCTGAGAACACTGTGGTCAGCCCCTTGCTTTGCGGCGTAGGCTTCAGGCTCTTGCCAGCCTTAATCTCAGCCAGTAGCTCCGAGTTGTCGCCCGTCGGGGACATCATGTTGAAAGACTTGGTGCCTATGCAGAGGCAGGAGATGAGGCACTGGCCAG-GGTGGGGCTGCATCCCTGCCACCCCTCACCCGCCCCTCTGCAGCCCCCTTCCCAAGCCAAGATTGGCTGGGTGCCCATCCTTGGCCCCAGCAGGCAGCTCTCCAGATCCCAGG-TCCCACAGGCTGCTTTCAGGGCCCCCAGAGGCGGGCCCTTGGTTCCCCGACTGTGACAACCCCACTATCCT-CCCCACCCTACTCACGGGGTGGAGGGCCCCCGCCTGGAGGACCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATGTCCCCGCCCAGC-CACTGACTGCCCAGCTCCAAA-----ACAA-TACCTGG-AATCAGCCACCCGACCTTTGTCCCAGGTTCCCTGGCTCAGCCCGGCTGGGGTGGAGCCTCCCTCTGGCCCTCTCCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTGAGTCAATTGGGGCCTCCACGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125291659 1030 + 130588469 AATGGCATGAGGGATGGGCTGTGCATCCAGATGCAGACCCCAGGGCTCCCTGGGCA-CCCCGCCCCACCCACCTtccgcctctgctcctcctcctcctGCATCTTCAGCTGCAGCTTGCGCGCCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCATCCTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCACGCCCGGCGCAGGAGTAGTGGGTGGCACCGGAACCAAGCTTCCATTGAGCAGCGGCTGGAACCCCGCAGCTGGCGGTGTGGGGCTCCGGACTGGTGACAGTGCAGGTGACACAGACGGCAGCGGTGAATCCGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCCGGTGGCCTGGGGCCAGGGAAGCCAGGTCGCAGGCTCCTGCCAGGCCC---GCCTACCTGGAAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGCCCCTTGCTTTGCGGCGTAGGCTTCAGGCTCTTGCCAGCCTTAATCTCAGCCAGTAGCTCCGAGTTGTCGCCCGTCGGGGACATCATGTTGAAAGACTTGGTGCCTATGCAGAGGCAGGAAATGAGGCACTGGCCAG-GGTGAGGCTGCATCCCTGCCACCCCTCACCCGCCCCTCTGCAGCCTCCTTCCCAAGCCAGGATTGGCTGGGTGCCCATCCTCGGCCCCAGCAAGCAGCTCTCCAGATCCCAGG-TCCCACAGGCTGTTTTCAGGGCCCCCAGAGGCGGGCCCTTGGTTCCCCGACTGTGACAACCCCACTATCCT-CCCCACCCTACTCACGGGGTGGAGGGCCCCCGCCTGGAGGACCCTGGGAGTTCATGGTGGCTCTTGG-------------------GCATATGTCCCCGCCCAGC-CACTGACTGCCCAGCTCCAAA-----ACAA-TACCTGG-AATCAGCCACCCGACCTTTGTCCCAGGTTCCCTGGCTCAGCCTGGCTGGGGTGGAGCCTCCCTCTGGCCCTCTCCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTGAGTCAATTGGGGCCTCCATGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114993925 1045 - 155834243 GGTGGCATGGGGGATGGGCTGTGCATCCGAATGCAGACCCCAGGGCTCCCTGGG----CCCGCCCCACCCACCTTCCGCCTCTGCTCCTCTTCCTCCTGCATCTTCAGCTGCAGCTTGCGCACCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCATCGTGGGTAGGGATGAGCGCCTCCACGTCCAGCTGCACACCGGGCGCAGGGGTAGCAGGTGGCACCGGAACCAAGCTTCCATTGAGCAGCGGCTGAAAACCTGCAGCTGGCGGTGTGGGGCTCCGGGCTGGTGATGGTGTAGGTGACACAGGCGGCAGCGTTGAGTCGGGCTGCAGGGAGAAGCGGTGGGGCTGAGCGCCCAGTGGCCTGGGGCCAGGGGACCCGGGTCGCAGGCTCCTGCCGGGCCT---GCCTACCTGGGAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGCCCCTTGCTCTGCGGTGTCGGCTTCAGGCTCTTGCCTGCCTTAATCTCAGCGAGTAGCTCCGAGTTGTCGCCCGTCGGGGACATCATGTTGAAAGACTTGGTGCCTATGTGGAGGCAGGAGATGAGG-ACTGGCCAG-GGTAGGGCTGCACCCCCACCACTCCTCAGCCGCCCCTCTGCAGCCCCCTTTCCAAGCCAGGATAGGCTGGGTGCCCATCCTCAGGCCCAGCAGGCAGCTCTCCAGATCCCAAG-TCCCGCAGGCAGCTTTAAGGGCCGGCAGAGCCCGGCCCTTGGTTCCCCAACTGTGGCAATCCCATGGTCCT-CCCCATCTTACTCACGGGGTGGAGGGCCCCCGCCTGGAGGCCCCTGGGAATTCATGGTGGCTCCTGGGCTGGCCCTCCCGACTCTAGCATATGTTTCCACCCAGA-CACTGACTGTCCAGCTCTAAA-----ACAC-TACCTGG-AGTCAGTCATCCGACCTTTGTACCAGGTTCCCTGGCTCAGCCCAGCTGGGGTGGAGCCTCCCTCTGACCCTGTTCCTACATCAGCAAAGCCTCAGTGACCCTTGAACTAAGTCAACTGGCACCTCCAAGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            2746 1020 -     13323 GGCGGTGTGGGGGATGGGCTG------CAGGCGCAGACCCC--GGCCCGCGGAGAAGCCCCGCCCCACCCACCTTCCGCCGCTGCTCCTCCTCCTCCTGCATCTTCAGCTGCAGCTTGCGCACCATCACCTGGCGCTTCCACTCGGGGATGGGCCGGCCCTGCTCGTCGTGCGTGGGGATGAGCGCCTCCACGTCCAGCTGCAcgcccggcgctggggtggccggcggcgccggcgccAAGCTGCCATTGAGCAGCGGCTGGAGCCCCGCGGCCGGCGGGGTGGGGCTCCGGGCCCGTGATGGCTCAGGCGACAC---CGGCAGCGGCGAGTCGGGCTGCGGGGAGAAGCGGCGGGGCTGAGCGCCCGACGGCCTCGGGCGCAGGGAGCCAGGGCGGGGGCTCCTGTCGGGCCC---GCCTACCTGGGAGGCCGGCTGCCCGCTGCCTGAGAACACTGTGGTCAGCCCCTTGCTCTGCGGCGTCGGCTTCAGGCTCTTGCCCGCCTTAATCTCAGCCAGTAGCTCTGAGTTGTCGCCCGTCGGTGACATCATGTTGAAAGACTTGGTGCCTAAGCGGAGGCAGGAGAGGAGGCGCTAGCCTGTGGGGGGGACACGTGCCCGCCGCCCCCCACAACCCCCTCTGCAGCCCTC-CCCCAAGCCAGGACCGGCTGGGT-CCTTCCCTTGGGCCCAGAGGGCAGCTCTCCAGATCCT-GG-TCCTCTGGGCAGCTTTCAGGGCCCCCGCAG---------------------CATGGCAGCCCCACCATCCT-CCAAGCCCTACTCACAGGGTGTAGGGCCTCTGCCTGGAGGTCCCTGGGAGTTCATGGTGGCTCTTGGGCCGGCCCTGGGGACTCCAGCATATGTCTCCACCCAGC-CACTGCCTGTCCAGCTCCAAAACACTACAC-TACCTGG-GGCCAGCCACCCGACCTTTGTCCCAGGTTCCCTGGCTCAGCCCTGCCGGGGTGGAGTCTCCCTTTGGCCCCCTCCCTGCATCAGTAAAGCC-CAGTGACCCTTGGACTGAGTCAATTGTGGCCTCTATGG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152127997 1018 + 156508116 ggtgacatggggaacagggtgtaggtttag-tgcagaccccagggctgtctgggaagccctgccccacccaccttcctccgctgctcctctTCCTCCTGCATCTTCTGCTGCAGCTTGCGGACCATCACCTGGCGCTTCCACTCCGGGATGGGCCGGCCCTGCTCATCAAGAGTGGGAATGAGGGCCTCCACATCCAGATGGACTCCAGGTGCCGGGGTGGCAGGTGGTGCCGGCACCACACTGCCATTGAGCAGTGGCTGAGACCCAGAGGCTGGCGGGGTGGGGCTCCGAGTCCGAGATGGCGCAGGTGACACCAGAGGCTGCGGTGACTCAGGCTGCCGGGAGAAGCAGTAGGGCTGAGCACTGGGC------AGGCACTGGGAGCCCGGGCGGGGCACTCGGCCAG---T---GCCTACCTGGGAGGCTGGCTGCCCACTGCCTGAGAACACGGTTGTCAGCCCCTTGCTCTGCGGTGTCGGCTTCAGGCTCTTGCCCGCCTTTATCTCAGCCAGAAGCTCTGAGTTATCACCCGTTGGGGACATCATGTTGAAAGATTTGGTGCCTGCCCA----CAGGAGAAGAAGCACTCATTTG-AGGAAAGGGGTACCATTCACATCTCCCTCCTGCCC--CCGAGACCCCCTCTCCAAACCAGA--TGGGTGGG-GCCCACCTTTGGGCCCAG-AGGAAGCTCTCCAGATCCTGGGATACCGAAGGTAGCTTCCAGGACACCCAAAGGTGGGCCATCAGCGCCCAGTCCACGGTGACCCGA--------CCAGGTCTTACTCACTGGGTATATGGCCCCCACCTAGAGGCCCCTGGGAGTTCATGGTGGCTCTTGGGCCAGCCCTGGGGACTCCAGCAGATGT--CTGCCCA-C-CATCAACTGCCCAGCTCCAAA-----GCACGGACCCGG---CTAGCCACCCAACCTTTGTCCCAGGTTTTCTGGCTCAGCCCCACAAGGGCGGAGTCTCCCTAGGGCCCTCTCCCTTCATCAGCAAAGC--CAGTGACCCTTGGACTGAGCCAGCTGGAGCCTCCAAGG
i mm10.chr4                    I 379 C 0
s canFam3.chr5                  28605634 1019 -  88915250 GGTAAGGTGGGGGATGGGCCAAGGGCCCCACCGCAGACCTGTGGGCCGTCTGGGAAGCCCCACCCCACCCACCTTCCGCCTCTGTTCTTCCTCCTCCTGCATCTTCAGCTGCAGTTTCCGCACCATCACCTGGCGCTTCCACTCAGGGATGGGCCGGCCCTGCTCGTCGTGTGTGGGGATGAGCGCCTCCACATCCAGCTGAACACCAGGCGCCGGGGTGGCAGGCGGTGCCGGCGCCACGCTGCCATTGAGCAGTGGCTGGGGCCCTGCAGCCGGTGGGGTGGGGCTGCGGGCCCGTGAAGGCGCAGGCGATGCCTGGGGCAGCGGCAAGTCTGGCTGCAGGGAGAAGTGGTGACACTGAGTGCCTGGTGAGCAGGGGTGAGAGGAGCTGGGGCAGGAG----TGCCCGGCCCACTGCCTACCTGGGAGATGGGCTGCCCGCTGCCCGAGAACACTGTCGTCAGCCCTTTGCTCTGCGGTGTCGGCTTCAGACTCTTGCCAGCCTTGATCTCAGCCAGTAGCTCGGAGTTGTCACCCGTCGGGGACATCATGTTGAAAGACTTGGTGCCTGCACAGAGGCAGGAGAGGAGGTGCTGGCCGCTGGTGG---------CCCGCCGACCCGCACCTGCCCCTCTGCTGTCCCCTCCCCAAGTCAGGA-------GGTGCCCA-----GGCCCTAGATGGCAGCTCTCCAGATCCCAGG-CTCCCTGGGCGGCTCTCAGGGGCGCCAAGGGGGCA--------TCCCCGCTCACGG-GGCCCCACCATCTT-CCCAGCCCTACTCACGGGACATGGGGGCCCCTCCTGGAGGCCTCTGGGAGTACATGCTGGCTCCTGGCCCTGCGCTGGGTACTCCAGAGAATGTCTCCACCCAGTACACTGACTGACCAGCTCTAAG-----ACAC-TACCTGGGGGCCAGCCACCTGACCTTTGTCCTGGGTTCCCTGGCTCGGCCCTGCCGGGGTGGAGTCTCCCTCCAGCCCTCT--CTGCATCAGCAAAGC-TCAGTGACCCTTGGACTGAGTCACCTGGGGCCTCCATGG
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              128226 2216 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=3458.000000
s hg38.chr1_KI270714v1_random      23215 2 +     41717 AC-
s panTro4.chr1_GL389124_random     22801 2 +     50403 AC-
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224063898 2 + 229942017 AC-
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030086 2 - 229590362 AC-
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912277 2 + 227556264 AC-
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211062956 2 - 220367699 AC-
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292689 2 + 130588469 AC-
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114994970 2 - 155834243 AC-
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              130442 1 +    135318 -C-
i tarSyr2.KE930532v1           I 2216 I 134
s micMur1.scaffold_20500            3766 1 -     13323 -C-
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152129015 1 + 156508116 -C-
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28606653 2 -  88915250 -CT
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=10010.000000
s hg38.chr1_KI270714v1_random      23217 2 +     41717 AT
s panTro4.chr1_GL389124_random     22803 2 +     50403 AT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224063900 2 + 229942017 AT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030088 2 - 229590362 AT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912279 2 + 227556264 AT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211062958 2 - 220367699 AT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292691 2 + 130588469 AT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114994972 2 - 155834243 AT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            3768 2 -     13323 AT
i micMur1.scaffold_20500       I 1 C 0
s mm10.chr4                    152129017 2 + 156508116 AT
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28606655 2 -  88915250 AT
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              130443 134 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=4124.000000
s hg38.chr1_KI270714v1_random      23219 2 +     41717 GC
s panTro4.chr1_GL389124_random     22805 2 +     50403 AC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224063902 2 + 229942017 AC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030090 2 - 229590362 AC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912281 2 + 227556264 AC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211062960 2 - 220367699 AC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292693 2 + 130588469 AC
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1       380 2 +      3282 AC
i nasLar1.chrUn_JMHX01284760v1 N 0 I 716
s calJac3.chr7                 114994974 2 - 155834243 AC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            3770 2 -     13323 AC
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152129019 1 + 156508116 A-
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28606657 2 -  88915250 AT
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              130443 134 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=480899.000000
s hg38.chr1_KI270714v1_random      23221 130 +     41717 AGAGTCCAGACCCCGGAGTGCCAGTA-CCACCTGCTCCCCTCCCTCGCCACCACACCCACAGACAGACGCACAAGCAGACACATTGGTTGCAAGCCGGGAGCACATTTATGGCAAAGC-ACGGCTCAGCTCT
s panTro4.chr1_GL389124_random     22807 130 +     50403 AGAGTCCGGACCCCAGAGTGCCAGTA-CCACCTGCTCCCCTCCCTTGCCACCACACCCACAGACAGACGCACAAGCAGACACATTGGTTGCAAGCCGGGAGCACATTTATGGCAAAGC-ACGGCTCAGCTCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224063904 131 + 229942017 AGAGTCCGGACCCCAGAGTGCCAGTACCCACCTGGTCCCCTCCCTCCCCACCACACCCACAGACAGATGCACAAGCAGACACATTGGTTGCAAGCCGGGAGCACATTTACGGCAAAGC-ACGGCTCAGCTCT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030092 131 - 229590362 AGAGTCCGGACCCTGGAGTGTCTGTACCCACCTGGTCCCCTCCCTCCCCACCACACCCACAGACAGATGCACAAGCAGACACATTGTTTGCAAGCCGGGAGCACATTTATGGCAAAGC-GAGGCTCAGCTCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912283 131 + 227556264 AGAGTCCGGACCCTGGAGTGTCAGTACCCACCTGGTCCCCTCCCTCCCCACCACACCCACAGACAGACGCACAAGCAGACACATTGTTTGCAAGCCGGGAGCACATTTATGGCAAAGC-GAGGCTCAGCTCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211062962 131 - 220367699 AGAGCCCGGACCCTGGAGTGTCAGTACCCACCtggtcccctccctccccaccacacccaCAGACAGACGCACAAGCAGACACATTGTTTGCAAGCCGGGAGCACATTTATGGCAAAGC-AAGGCTCAGCTCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292695 131 + 130588469 AGAGTCCGGACCCTGGAGTGTCAGTACCCACTTGGTCCCCTCCCTCCCcaccacacgcacagacagacgcacaagcagacacaTTGGTTGCAAGCCGGGAGCACATTTATGGCAAAGC-GAGGCTCAGCTCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114994976 131 - 155834243 AGAGTCTGGACCCTGGAGTGCCAATACCCAGCTGGTCCCCCCTCTCTCTCCCACACCCACAGACAGACGCACAAGCAGACACACTGGCTGCAAGCCAGGAGCACATTTATGGCAAAGC-GCAGCTCAGCTCT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            3772 127 -     13323 TGAGTCAGGACCCTGGAGTGCCAGTGCCCAGCTGG--CCGCCCCTCCCCA-CACAGTGACGGACAGATGCACGAGCAGACACACAGGTTGCAATCCA-GAGCACATTTATGGCAAAGC-ACGGCTCAGCTCT
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152129020 122 + 156508116 AGACTCAGGACCCTGGTGTGCC---ACCCAGCTGGACCCTCCCTGGGCC--CACACCCACAGACAGAC-----AGCAGACATACTGACTGCAAGCGGAGCACACATTTATGGCAAAGCAACTGCGTGGCCCT
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28606659 130 -  88915250 GGACTCAGAACCCTGGA-TGCCAGAGCCCAGCCGGTCTCCTCCCCGCCCCCCATACACACAGACAGACACACGCGCAGACACACTGGTTGCAAGCCCGTAGCACACTTATGGCAAAGC-GCTGCTCAGCTCT
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e tarSyr2.KE930532v1              130443 134 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=2156.000000
s hg38.chr1_KI270714v1_random      23351 1 +     41717 A
s panTro4.chr1_GL389124_random     22937 1 +     50403 A
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064035 1 + 229942017 A
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030223 1 - 229590362 A
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912414 1 + 227556264 A
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063093 1 - 220367699 A
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292826 1 + 130588469 A
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995107 1 - 155834243 A
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              130577 1 +    135318 G
i tarSyr2.KE930532v1           I 134 I 38
s micMur1.scaffold_20500            3899 1 -     13323 G
i micMur1.scaffold_20500       C 0 I 2
s mm10.chr4                    152129142 1 + 156508116 G
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28606789 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=129474.000000
s hg38.chr1_KI270714v1_random      23352 31 +     41717 -GG------GGAAAGCAGAGCCCTTACTAAGGCCACAG
s panTro4.chr1_GL389124_random     22938 31 +     50403 -GG------GGAAAGCAGAGCCCTTACTAAGGCCACGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064036 37 + 229942017 -GGGGCCCAGGAAAGCAGAGCCCTTACTAAGGCTACGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030224 37 - 229590362 -GGGGCCCAGGAAAGCAGGGCCCTTACTGAGGCTACGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912415 37 + 227556264 -GGGGCCCAGGAAAGCAGGGCCCTTACTGAGGCTACGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063094 37 - 220367699 -TGGGCCCAGGAAAACAGGGCCCTTACTGAGGCTACGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292827 37 + 130588469 -GGGGCCCAGGAAAGCAGGGCCCTTACTGAGGCTACGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995108 37 - 155834243 -GAGGCCCAGGAAAGCAGAGCCCTTACTAAAGCTACGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            3902 37 -     13323 -GGGACCCAGGAAAGCAGAGCCCTTACTTAGGCTATGG
i micMur1.scaffold_20500       I 2 I 2
s mm10.chr4                    152129144 35 + 156508116 -GGGACCTTGGAAGGAGGAG--CTTACTGAGGACATGG
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28606790 38 -  88915250 GGGGACCTAGAAAAGCGGAGCCCTTACTAAGGATATGG
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e tarSyr2.KE930532v1              130578 38 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=-531.000000
s hg38.chr1_KI270714v1_random      23383 2 +     41717 ---GA-
s panTro4.chr1_GL389124_random     22969 2 +     50403 ---GA-
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064073 2 + 229942017 ---GA-
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030261 2 - 229590362 ---CA-
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912452 2 + 227556264 ---CA-
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063131 2 - 220367699 ---CA-
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292864 2 + 130588469 ---GA-
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995145 2 - 155834243 ---GA-
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              130616 2 +    135318 ---GA-
i tarSyr2.KE930532v1           I 38 I 298
s micMur1.scaffold_20500            3941 2 -     13323 ---GG-
i micMur1.scaffold_20500       I 2 C 0
s mm10.chr4                    152129179 2 + 156508116 ---GA-
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28606828 6 -  88915250 GGTGAA
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=948251.000000
s hg38.chr1_KI270714v1_random      23385 300 +     41717 GGCACCCAGGAAGAAGGG-CAGGCAGGTAATATGCAAACACCCAGGGC--AGAGGGTGCATTTTCTGGCTTAGCCGGAGGAGGCGAATGGAGATTT---GGAGAG-------ATAGGTCTCTTGAGCCCCGATGAAGGGGTCAGGTCTGGGAGGGAGGAATAAAATGGGCCGACAGCTCTTGGATTCCCAGG--CTGGGGATCCCAGAGTGCAGTCACCGGGAGGAGAAGAGTAGGAGAAAGGGAAAATCGG-----TGTGGCTTATTCATTTA-TTTAGGCAAAACCATCAGCCAGGCGCAGAATGCTTGGGTGCATATG
s panTro4.chr1_GL389124_random     22971 300 +     50403 GGCACCCAGGAAGAAGGG-CAGGCAGGTAATATGCAAACACCCAGGGC--AGAGGGTGCATTTTCTGGCTTAGCCGGAGGAGGCGAATGGAGATTT---GGAGAG-------ATAGGTCTCTTGAGCCCCGATGAAGGGGTCAGGTCTGGGAGGGAGGAATAAAATGGGCCGACAGCTCTTGGATTCCCAGG--CTGGGGATCCCAGAGTGCAGTCACCGGGAGGAGAAGAGTAGGAGAAAGGGAAAATCGG-----TGTGGTTTACTCATTTA-TTTAGGCAAAACCATCAGCCAGGCGCAGAATGCTTGGGTGCATATG
i panTro4.chr1_GL389124_random C 0 M 147
s ponAbe2.chr1                 224064075 300 + 229942017 GGCACCCAGGAGGAAGGG-CAGGCGGGTAATATGCAAACACCCAGGGC--AGAGTGTGCATTTTCCGGCTTAGCCAGAGGAGGCGAATGGAGATTT---GGAGAG-------AGAGGTCTCTTGAGCCCCGAAGAAGGGGTCAGGTCTGGGAGGGAGGAATAAAATGGGCCGACAGCTCTTGGATTCTCAGG--CTGGGGATCCCAGAGTGCAGTCACGGGGAGGAGAAGAGTAGGAGAAAGGGAAAATCAG-----TGTGGCTGGCTCATTTA-TTTAGGCAAAACCATCAGCCAGGCGCAGAATGCTTGGGTGCATATg
i ponAbe2.chr1                 C 0 I 12
s rheMac3.chr1                 220030263 296 - 229590362 GGCACCCAGGAAGAAGGG-CAGGTGGGTAATATGCAAATACACAGGGC--AGAGGGTGCATTTTCCGGCTTAGCCGGAGGAGGCAAATGGAGATTT---GGAGAG---------AGGTCTCTTGAGCCCCGATGAAGGGGTCAGGTCCGGGAGGGAGGAACAAAATGGGCTGATAGCTCTTGGATTCCCAGA--CTGGGGATCCCAGAGTACAGTCACAGGGAAGAAAAAG--AGGAGAAAGGGAAAATCGG-----TGTGGCTGGCTCATTTA-TTTAGGCAAAACCACCAGCCAGGCGCAGAATGCTTAGGTGCGTATG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912454 296 + 227556264 GGCACCCAGGAAGAAGGG-CAGCTGGGTAATATGCAAATACACAGGGC--AGAGGGTGCATTTTCCGGCTTAGCCGGAGGAGGCAAATGGAGATTT---GGAGAG---------AGGTCTCTTGAGCCCCGATGAAGGGGTCAGGTCCGGGAGGGAGGAACAAAATGGGCTGATAGCTCTTGGATTCCCAGA--CTGGGGATCCCAGAGTATAGTCACAGGGAAGAAAAAG--AGGAGAAAGGGAAAATCGG-----TGTGGCTGGCTCATTTA-TTTAGGCAAAACCACCAGCCAGGCGCAGAATGCTTAGGTGCGTATG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063133 296 - 220367699 GGCACCCAGGAAGAAGGG-CAGGTGGGTAATATGCAAATACACAGGGC--ACAGGGTGCATTTTCCAGCTTAGCCGGAGGAGGCAAATGGAGATTT---GGAGAG---------AGGTCTCTTGAGCCCCGATGAAGGGGTCAGGTCCGGGAGGGAGGAACAAAATGGGCTGACAGCTCTTGGATTCCCAGA--CTGGGGATCCTAGAGTACAGTCacagggaggaaaaag--aggagaaagggaaaatcGG-----TGTGGCTGGCTCATTTA-TTTAGGCAAAACCACCAGCCAGGCGCAGAATGCTTAGGTGCGTATG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125292866 296 + 130588469 GGCACCCAGGAAGACGGG-CAGGTGGGTAATATGCAAATACACAGGGC--AGAGGGTGCATTTTCCGGCTTAGCCGGAGGAGGCAAATGGAGATTT---GGAGAG---------AGGTCTCTTGAGCCCCGATGAAGGGGTCAGGTCCGGGAGGGAGGAACAAAATGGGCTGACAGCTCTTGGATTCCCAGA--CTGGGGATCCCAGAGTACAGTCACAGGGAGGAAAAAG--AGGAGAAAGGGAAAATCGG-----TGTGGCTGGCTCATTTA-TTTAGGCAAAACCACCAGCCAGGCGCAGAATGCTTAGGTGCGTATG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995147 303 - 155834243 GGCACCCAGGAAGAAGGG-CAGGCGGATAACATGCAAATCCCCAGGGC--AGAGTTTGCATTTTCCGGCTCAGGTGGAAAAGGTGAATAGTGATTTCAAAGAGAG-------AAAGGTCTCTTGAGCTCCCAGGAAGGGGTCAGGTCTAGGAGGGCGGAACAAAATGGGCTGACAGCTCTTGGATTCCCAGG--CTGGGGATTCCAGAGTACAGTCACAGGGAGGAGAAGAGGAGGAGGAAGGGAAAATCAG-----TGTGGCTGGCTCATTTA-TTTAGGCAAAACCATCAGCCAGGCACAGAATGCTTGGGTGCATATG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            3943 282 -     13323 GGCACCCAGGAAGAAGGA-CAGGTGGATAATATGCAAATGCCCGGCAC--AGACTTTGCATTTTCTGACTTGGCTGGCAGAGGTGAATGGGGATTT---GGGGAG-------GGATGACTTCTGAGCCCCGAGAAAAGGGCCAGGTCTGGGAGGGAGAAACAAAATGGGCCAACAGCTCTTGGATTCCCAGG--CTGGGGACTCCAGAGGGCAATGACAGGGAGGGAAAAG------------------CGG-----TGTGGCCGGCTCACTGATTTTAGTCAAAACCGG-AGCCAGGTGCACGATGCTTGGGCATATATA
i micMur1.scaffold_20500       C 0 I 9
s mm10.chr4                    152129182 267 + 156508116 AGGGCACGGGAAGACCAA--AGCCCAAAGGTATGCAAATAC-CTGGAC--AGAGTTTGCATTTTTCAGCAGGGCTGGCAGAGGTGACTGGATGGTG---GAGGAGTACCCGGGGAGGGCTTTGCTGCCCCCCC-------CCCCATTTGGGC---AGGAATAAAGT--ACTAAAGGCCCTGAGATACCAGGG--CTGGCCAT-CCAGAGTACATCCCAAGAGAAGGATAGC--------------------G-----TGCAGCCGGCTCATTTA-CTTAAGCAAAACTGGAAGCCAGGCACCGGATGCTGTGATGC-----
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28606834 304 -  88915250 GGCACCCAGGAAGAAGGGCCAGGTGAAAAACATGCAAATATCCAGTGCTTGGAGTTTGCATTTTCTGACAAGGCTGGCAGAGGTGACTGG-GGTCT---GGGAAG-------GGCTGTCTTTAGAGA-CTGAGGAGGGGGTGAGGGCTGGGTGAGGGCAACAAAACAGGCCGATGGCTTTTAGGTTCCCCGGCACTGGGGATCCTAGAG--CAATAAGCAGGAAGGGTAAA--AAGAAAAGGTGCCAGGCAGGCACTGGCAACAGGTCCATTTT-TTTAGGCAAAACCGACAGCCATGGGCAGAATTTGTGGGTGTGCATG
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e tarSyr2.KE930532v1              130618 298 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=58491.000000
s hg38.chr1_KI270714v1_random      23685 34 +     41717 TGGG--TATGAGGGTAGGTATGAGGTACAAGGCCCC
s ponAbe2.chr1                 224064387 34 + 229942017 tggg--tatgagggtaggtatgaggTGCAAGGCCCC
i ponAbe2.chr1                 I 12 C 0
s rheMac3.chr1                 220030559 34 - 229590362 TGGG--TATGAGGGTAGGTATGAGGTGCAAGGGCCC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912750 34 + 227556264 TGGG--TATGAGGGTAGGTATGAGGTGCAAGGGCCC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063429 34 - 220367699 TGGG--TATGAGGGTAGGTATGAGGTGCAAGGGCCC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293162 34 + 130588469 TGGG--TATGAGGGTAGGTATGAGGTGCAAGGGCCC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995450 34 - 155834243 TGGG--TATGAGCATAGGTAGGAGGTGCAAGGCCCC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4234 32 -     13323 TGGGCATACGAGGGTAG---TGGGGTGCAAGGCCC-
i micMur1.scaffold_20500       I 9 C 0
s mm10.chr4                    152129449 18 + 156508116 --------CGAGGGTGGGCGTTCGGG----------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607138 30 -  88915250 CGGG--TGTGGTGGAGGGAGGCAGGTAGCTGT----
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e tarSyr2.KE930532v1              130618 298 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T
e panTro4.chr1_GL389124_random     23271 147 +     50403 M

a score=8122.000000
s hg38.chr1_KI270714v1_random      23719 9 +     41717 ACCCATGCA
s ponAbe2.chr1                 224064421 9 + 229942017 ACCCATGCA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030593 9 - 229590362 ACCCATGCA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912784 9 + 227556264 ACCCATGCA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063463 9 - 220367699 ACCCATGCA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293196 9 + 130588469 ACCCATGCA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995484 9 - 155834243 ACCTGTGTC
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              130916 6 +    135318 ---GGGGCA
i tarSyr2.KE930532v1           I 298 I 205
s micMur1.scaffold_20500            4266 8 -     13323 -CCCGTGGC
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152129467 3 + 156508116 ------GTA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607168 4 -  88915250 ---AGTG--
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T
e panTro4.chr1_GL389124_random     23271 147 +     50403 M

a score=130834.000000
s hg38.chr1_KI270714v1_random      23728 66 +     41717 TCGAGGTTCTCTCGCCTGCCAGCCCCTGCCCCT-----GCCCTT---------TCCTCAAGGCTGGGCCCCTCCTCCCGT
s ponAbe2.chr1                 224064430 66 + 229942017 TCGAGGTTCTCTCGCCTGCCAGCCCCTGCCCCT-----GCCCTT---------TCCTCAAGTCTGGGCCCCTCCTGCCTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030602 60 - 229590362 TCGAGTTTCTCTCGCCTGCCA------GCCCCT-----GCCCTT---------TCCTCGAGTCTGGGCCCCTCCTGCCTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912793 60 + 227556264 TCGAGTTTCTCTCGCCTGCCA------GCCCCT-----GCCCTT---------TCCTCGAGTCTGGGCCCCTCCTGCCTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063472 59 - 220367699 TCGAGTTTCTCTCGCCTGCCA------GCCCCT-----GCCCTT---------TCCTGGAGTCTGGG-CCCTCCTGCCTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293205 60 + 130588469 TCGAGTTTCTCTCGCCTGCCA------GCCCCT-----GCCCTT---------TCCTCGAGTCTGGGCCCCTCCTGCCTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995493 65 - 155834243 TCAAGGTTCTCTGACCTGCTAGTCCCTGCCCCT-----GCCCTT---------TCCTCGAGTCTGGGCCCCTCCTGCTT-
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4275 63 -     13323 TCAAGGTTC-CTCGCCTGCCAGCCCCTGACCCT-----GCCCTT---------TCCT-GAGTCCCAG-CCCGGCTGCCTC
i micMur1.scaffold_20500       I 1 C 0
s mm10.chr4                    152129470 64 + 156508116 -TCAGGTCCTCTCACCTGCTG------GCCCCTAGCAAGCCCTT---------TCCTCAGTCCCAGGCCCATTCTGCCTC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607172 70 -  88915250 TGGAGGACC-CTGGCCTTCTGGCCCTTGGCCCT-----GCCCTTTATAAAGGGTCTTTGGGCTTTGACTTCCCCGA----
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e tarSyr2.KE930532v1              130922 205 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T
e panTro4.chr1_GL389124_random     23271 147 +     50403 M

a score=450059.000000
s hg38.chr1_KI270714v1_random      23794 112 +     41717 GCTTTTCCTGC-----CTCTTCCCCCCACCCCGCGCCTCAGCCTCAGCCAGGAGCCGCGC------ACGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAAGAGGA
s panTro4.chr1_GL389124_random     23418 112 +     50403 GCTTTTCCTGC-----TTCTTCCCCCCACGCCGCGCCTCAGCTTCAGCCAGGAGCCGCGC------ACGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAagagga
i panTro4.chr1_GL389124_random M 147 C 0
s ponAbe2.chr1                 224064496 112 + 229942017 GCTGTTCCTGC-----CTCTTCCCCCCACCCCGCACCTCAGCCTCAGCCAGGAGCCGCGC------ATGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAAGAGGA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030662 112 - 229590362 GCTTTTCCTGC-----CTCTTCCCCCCACCCCCCGCCTCAGCCTCAGCCAGGAGCCACGC------GCGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAAGAGGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912853 112 + 227556264 GCTTTTCCTGC-----CTCTTCCCCCCACCCTGCGCCTCAGCCTCAGCCAGGAGCCACGC------GCGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAagagga
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063531 112 - 220367699 GCTTTTCCTGC-----CTCTTCCCCCCACCCTGCGCCTCAGCCTCAGCCAGGAGCCGCGC------ACGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAAGAGGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293265 112 + 130588469 GCTTTTCCTGC-----CTCTTCCCCCCACCCCGCGCCTCAGCCTCAGCCAGGAGCCGCGC------ACGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCAagagga
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995558 109 - 155834243 GCTTTTCCTGC------TCTTCCCCCCATCCCACGCTTCAGCCTCAGCCAGGAGCCGCGC--------GCAGCTACTCACTCTTCCTGTGTCTCAGGACTCTCACTTCTaggaacggagagga
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4338 105 -     13323 ACTTCTCCTGC-----CG-TCTCCCCCACCCCGCGCCTTAGCCTCAGCCAGGAGCA------------GCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCGAGAGGA
i micMur1.scaffold_20500       C 0 M 148
s mm10.chr4                    152129534 120 + 156508116 --ATTTTCTGGGCAAGCCACCTCCCCCACCCCACGCCTTAGCCTCAGCCGCGAGC-ACGCCAGCCGGGGCAGCTACTCACTCTTCCTGTGTCTCAGGACTCTCACTTCTAGGAACAGAGAGGA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607242 100 -  88915250 GCGTGCCTTGG-----------TCCCCGCCCCGCA------CCTCAGCCAGGAGCCACGC------ACGCAGCTACTCACTCTTCCTGTGCCTCAGGACTCTCACTTCTAGGGACCgagagga
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e tarSyr2.KE930532v1              130922 205 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=121795.000000
s hg38.chr1_KI270714v1_random      23906 34 +     41717 GAGAAGTGACAGCGGAGTTAGGAGGGAAAGGGGG
s panTro4.chr1_GL389124_random     23530 34 +     50403 gagaagtgacagcggagttaggagggaaaggggg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064608 34 + 229942017 GAGAAGTGACAGCGGAGTTAGGAGGGAGAGGGGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030774 34 - 229590362 GAGAAGTGACAGTGGAGTTAggagggagagggga
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912965 34 + 227556264 gagaagtgacagtggagttaggagggagaggggg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063643 34 - 220367699 GAGAAGTGACAGTGGAGTTAGGAGGTAgaggggg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293377 34 + 130588469 gagaagtgacagtggagttaggagggagaggggg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995667 34 - 155834243 gagaagtgacagcagagttaggagggagaggggg
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152129654 33 + 156508116 GAGAATTGACAGAGAAGTTA-GAGGAAGGGGGGG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607342 34 -  88915250 gagaagtgacagcgaagttaggagaggtaggggg
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1       382 716 +      3282 I
e micMur1.scaffold_20500            4443 148 -     13323 M
e tarSyr2.KE930532v1              130922 205 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=5159.000000
s hg38.chr1_KI270714v1_random      23940 1 +     41717 C
s panTro4.chr1_GL389124_random     23564 1 +     50403 c
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064642 1 + 229942017 C
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030808 1 - 229590362 c
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221912999 1 + 227556264 c
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063677 1 - 220367699 c
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293411 1 + 130588469 c
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      1098 1 +      3282 c
i nasLar1.chrUn_JMHX01284760v1 I 716 I 334
s calJac3.chr7                 114995701 1 - 155834243 c
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              131127 1 +    135318 C
i tarSyr2.KE930532v1           I 205 I 372
s mm10.chr4                    152129687 1 + 156508116 T
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607376 1 -  88915250 c
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_20500            4443 148 -     13323 M
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=244794.000000
s hg38.chr1_KI270714v1_random      23941 84 +     41717 CAGGATGAGACTGGGATAGCAGGGGACAG---GGAGCGGGCCAGggagagc-aggaggg----------gggaagtggagaagagaggaggagCATTT
s panTro4.chr1_GL389124_random     23565 84 +     50403 caggatgagactgggatagcaggggacag---ggagcgggccagggagagc-aggaggg----------gggaagtggagaagagaggaggagCATTT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064643 84 + 229942017 CAGGATGAGACTGGGACAGCAGGGGACAG---GGAGCGGGCCTGGGAGAGC-AGGAGGG----------AGGAAGTGGAGAAGAGAGGAGGAGCTTTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030809 85 - 229590362 caggatgagactgggacagcaggggacag---ggagcgggccagggagagcggggggag----------ggggagtggagaagagaggaggagCTTTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913000 85 + 227556264 caggatgagactgggacagcaggggacag---ggagcgggccagggagagcggggggag----------ggggagtggagaagagaggagGAGCTTTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063678 83 - 220367699 caggatgagactgggacagcaggggacag---ggagcgggccagggagagc--ggggag----------ggggagtggagaagagaggaggagctTTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293412 84 + 130588469 caggatgagactgggacagcaggggacag---ggagcgggccagggagagc-aggaggg----------ggggagtggagaagagaggaggagCTTTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995702 84 - 155834243 caggatgagactgggacagcaggggacag---ggagcgggccagggagagc-aggaggg----------gggaagcggagaagagaggaggagCTTTG
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152129688 68 + 156508116 TGGGGTGAATCAGGGACAGCA------------AAGAGGGCCAGGGAGGGC-AGGAGGG-----------------GGAGAAGAGGGGTGGAGCTCGC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607377 97 -  88915250 ttgggtgaggctaggacagcgggggacagcaagaagagggcgggcaagagg-agggggagatgcgcagaggaggggagagaggagaggaCAAATTTTC
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1099 334 +      3282 I
e micMur1.scaffold_20500            4443 148 -     13323 M
e tarSyr2.KE930532v1              131128 372 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=847737.000000
s hg38.chr1_KI270714v1_random      24025 258 +     41717 CTGCCCATCTGACCCTGGCTCAGGCTGCTCTGGGGCCCCATGAGGGTGGTCCATCGAG-----------TTCCTGGTTTGGCTGGTGCCCCTGAGGGCTGGGCAGGGCAGGGCCACCAGTGGCTCTAG--CCCCCAGCAAGGGCCTCCACCTTGGCACTGGGTTGGGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGCCCAGAGTATATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------ACTGTGGAGGGA
s panTro4.chr1_GL389124_random     23649 258 +     50403 CTGCCCATCTGACCCTGGCTGAGGCTGCTCTGGGGCCCCATGAGGGTGGTCCATCGAG-----------TTCCTGGTTTGGCTGGTGCCCCTGAGGGCTGGGCAGGGCAGGGCCACCAGTGGCTCTAG--CCCCCAGCAAGGGCCTCCACCTTGGCACTGGGTTGGGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGCCCAGAGTATATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------ACTGTGGAGGGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064727 253 + 229942017 CTGTCCATCTGACCCTGGCTCAGCCTGCTCTGGGGCCCCATGAGGGTGGTCCATCGAG-----------TTCCTGGCTTGGCTGGTACCCCTAAGGGCT-----GGGCAGGGCCACCACTGGCTCTAG--CCCGTAGCAAGGGCCTCCACCTTGGCACTGAGTTGGGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGCCCAGAGTACATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------GCTGTGGAGGGA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220030894 251 - 229590362 CTGCCCGTCTGGCTCTGGCCCCGGCTGCTCTGGGGCCTCATGAGGGTGGTCCATCGAG-----------TTCCCGGCTTGGCTGGTGCCCCTGAGGGCT-----GGACAGGGCCACCACTGGCTCTAG--CCCCTAGCAAGGGCCTCCACCTTGGCACTGGGTTGTGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGTCCAGAGT--ATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------GCTGTGGAGGGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913085 251 + 227556264 CTGCCCGTCTGGCTCTGGCCCCGGCTGCTCTGGGGCCTCATGAGGGTGGTCCATCGAG-----------TTCCCGGCTTGGCTGGTGCCCCTGAGGGCT-----GGACAGGGCCACCACTGGCTCTAG--CCCCTAGCAAGGGCCTCCACCTTGGCACTGGGTTGTGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGTCCAGAGT--ATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------GCTGTGGAGGGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211063761 251 - 220367699 CTGCCCATCTGGCTCTGGCCCCGGCTGCTCTGGGGCCTCATGAGGGTGGTCCATCGAG-----------TTCCCGGCTTGGCTGGTGCCCCTGAGGGCT-----GGACAGGGCCACCACTGGCTCTAG--CCCCTAGCAAGGGCCTCCACCTTGGCACTGAGTTGTGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGTCCAGAGT--ATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------Gctgtggaggga
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293496 251 + 130588469 CTGCCCATCTGACCCTGGCCCCGGCTGCTCTGGGGCCTCATGAGGGTGGTCCATTGAG-----------TTCCCGGCTTGGCTGGTGCCCCTGAGGGCT-----GGACAGGGCCACCACTGGCTCTAG--CCCCTAGCAAGGGCCTCCACCTTGGCACTGGGTTGTGGTAGGGCACCCAGCCCTGGCTGTGCTGGGTGGGG-GTGTCTGGGGAAGTCCAGAGT--ATTTTTCTCTGCCCTTAGCTTCAGCCCTGCTGCAG-------------GCTGTGGAGGGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114995786 252 - 155834243 CTGCCCATCTGACTCTGGCTCAGGCTGCTCTGGGGCCCCACGAGGGTGGTCCATTGAG-----------TTCCTGGCTTGGCGGGTGCTGCTGAGGGCT------GGCAGGGCCACCACTGGCCCTAG--CCCCTAGCAAGGGCCTCCACTTTGGCACTGGGTTGGGATAGGGCACCCAGCCTGGGCTGTGCTGGGTGGGG-GTGTCAGGAGAAGCTCAGAGTATGTTTTTCTCTGTCCTTAGCTTCAGTCCTGCTGCAG-------------GCTGTGGAGGGA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4591 248 -     13323 CTGCCCTTCTGGCCCTGGCTCAGGCTGCTCTGGGGCCCCACAAGGGTGATCCATCCAG-----------TTCCCCGTTTGGCTGGTGGCCCTGAGGGAT-----GGGCAGGGATACCACTGGTCCTCGCCCCCCTTGCAAGGGCCTCCATCTTGGCACTGGGTTGGGATAGGGCACCCAGCCCAGGCTCTGCTGGGAGCAG-GTGTCTGGGGAAGCCTA------CTGTTCTTCCGTTCCTAGCTTCAGCCCCG-TGCAG-------------GCTGCAGAGGGA
i micMur1.scaffold_20500       M 148 C 0
s mm10.chr4                    152129756 189 + 156508116 CTGCCCTTGTGACCCTGGCTCAGGCCACTGTGGGGCCCCACAAAGGTGGTCCTCTAAGAGAGGCCATCTTGCTGGGTTTGGCTGAAGC----------------AGCCAGAGTCTATTTTTCCTTTTG--TCCCTAGTATTGTCT----------------GCAGAGGAAGGAGATCTCTGTCAAGTTGGGGGGGACGGGACGGGACTGAGGAGG----------GTTTTTCT----------------------------------------------------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607474 264 -  88915250 CAGCTCATGTGACCCTGGCTCAGGCTGCTCTGGGGCTCTGCAAGGGTGGTCCGCCCAG-----------TTCCAGCGCTTACTGGT--CCCTGAGGATT-----GGGTAGGGCTGCCACTGGCCCTGGCCCCCCTAGCAAGGGCCTCAGTCTTGGCATTGGGCTGGGAGAGGGCACCCAGCCCAGGCTCTGCTGAGAAGGG-GTGTCTGGAGAAGCCCAGTCT--ATTTTTTTCTGTTCCTAACTTCAGTCTTGCACCAGATGGACAAAGCTAGCCCCAGAGGTG
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1099 334 +      3282 I
e tarSyr2.KE930532v1              131128 372 +    135318 I
e gorGor3.chr1                 222979382 2574 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=15334.000000
s hg38.chr1_KI270714v1_random      24283 3 +     41717 AGG
s panTro4.chr1_GL389124_random     23907 3 +     50403 AGG
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222981956 3 - 229507203 AGG
i gorGor3.chr1                 I 2574 I 4173
s ponAbe2.chr1                 224064980 3 + 229942017 AGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031145 3 - 229590362 AGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913336 3 + 227556264 AGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064012 3 - 220367699 agg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293747 3 + 130588469 AGG
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      1433 3 +      3282 AGG
i nasLar1.chrUn_JMHX01284760v1 I 334 I 12
s calJac3.chr7                 114996038 3 - 155834243 GGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4839 3 -     13323 AGA
i micMur1.scaffold_20500       C 0 I 23
s canFam3.chr5                  28607738 3 -  88915250 GGG
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152129945 0 + 156508116 C
e tarSyr2.KE930532v1              131128 372 +    135318 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=7385.000000
s hg38.chr1_KI270714v1_random      24286  7 +     41717 -------AGAAGGA
s panTro4.chr1_GL389124_random     23910  7 +     50403 -------AGAAGGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064983  7 + 229942017 -------AGAAGGA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031148  7 - 229590362 -------AGGAGGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913339  7 + 227556264 -------AGGAGGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064015  7 - 220367699 -------aggagga
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293750  7 + 130588469 -------AGAAGGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996041  7 - 155834243 -------AGGAGGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4865  7 -     13323 -------GGGTGGG
i micMur1.scaffold_20500       I 23 I 11
s mm10.chr4                    152129945  2 + 156508116 ------------GA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607741 11 -  88915250 GCCGTTCTGGA---
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1436 12 +      3282 I
e tarSyr2.KE930532v1              131128 372 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=16003.000000
s hg38.chr1_KI270714v1_random      24293 3 +     41717 GGC
s panTro4.chr1_GL389124_random     23917 3 +     50403 GGC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064990 3 + 229942017 AGC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031155 3 - 229590362 GGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913346 3 + 227556264 GGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064022 3 - 220367699 ggc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293757 3 + 130588469 GGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996048 3 - 155834243 GGC
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              131500 2 +    135318 -GC
i tarSyr2.KE930532v1           I 372 I 28
s micMur1.scaffold_20500            4883 3 -     13323 GGC
i micMur1.scaffold_20500       I 11 C 0
s mm10.chr4                    152129947 3 + 156508116 GGC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607752 3 -  88915250 AGC
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1436 12 +      3282 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=6172.000000
s hg38.chr1_KI270714v1_random      24296 2 +     41717 TC
s panTro4.chr1_GL389124_random     23920 2 +     50403 TC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064993 2 + 229942017 TC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031158 2 - 229590362 TT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913349 2 + 227556264 TT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064025 2 - 220367699 tc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293760 2 + 130588469 TC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996051 2 - 155834243 TG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4886 2 -     13323 TC
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152129950 2 + 156508116 TC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607755 2 -  88915250 TC
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1436 12 +      3282 I
e tarSyr2.KE930532v1              131502 28 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=6819.000000
s hg38.chr1_KI270714v1_random      24298 4 +     41717 GGCA---
s panTro4.chr1_GL389124_random     23922 4 +     50403 GGCA---
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064995 4 + 229942017 GGCA---
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031160 4 - 229590362 GGCA---
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913351 4 + 227556264 GGCA---
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064027 4 - 220367699 GGCA---
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293762 4 + 130588469 AGCA---
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      1448 4 +      3282 CGCA---
i nasLar1.chrUn_JMHX01284760v1 I 12 I 483
s calJac3.chr7                 114996053 4 - 155834243 GGCA---
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4888 4 -     13323 AGCT---
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152129952 4 + 156508116 AGCC---
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607757 4 -  88915250 ---AATT
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              131502 28 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=72607.000000
s hg38.chr1_KI270714v1_random      24302 22 +     41717 GGTGCTGGACATGCTTCCATGG
s panTro4.chr1_GL389124_random     23926 22 +     50403 GGTGCTGGACATGCTTCCATGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224064999 22 + 229942017 GGTGCTGGACATGCTTCCATGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031164 22 - 229590362 GGTGCTGGACATGCTTCCATGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913355 22 + 227556264 GGTGCTGGACATGCTTCCATGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064031 22 - 220367699 GGTGCTGGACATGCTTCCATGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293766 22 + 130588469 GGTGCTGGACATGCTTCCATGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996057 22 - 155834243 GGTGCTGGGCACAGCTCCACGC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4892 20 -     13323 GTTAGTGGACATGCTACCAC--
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152129956 22 + 156508116 GGGAGTGGACAGGCTACCACAG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607761 22 -  88915250 GGTGATGAGTGTGCTACCATGG
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1452 483 +      3282 I
e tarSyr2.KE930532v1              131502 28 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=9700.000000
s hg38.chr1_KI270714v1_random      24324 2 +     41717 GC
s panTro4.chr1_GL389124_random     23948 2 +     50403 GC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065021 2 + 229942017 GC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031186 2 - 229590362 GC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913377 2 + 227556264 GC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064053 2 - 220367699 GC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293788 2 + 130588469 GC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996079 2 - 155834243 GC
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              131530 1 +    135318 -C
i tarSyr2.KE930532v1           I 28 I 1620
s mm10.chr4                    152129978 2 + 156508116 GC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607783 2 -  88915250 GC
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1452 483 +      3282 I
e micMur1.scaffold_20500            4912 0 -     13323 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=803076.000000
s hg38.chr1_KI270714v1_random      24326 267 +     41717 TCTGGTCTGCAGGGGCTGGGGCTCCATAGG-AACCATA-GGGGGACAAGCT--------------------CTGCTCTGCACTCCTAGTCAGGGAG--ATGAAGCTTT-GAGGGGTGC--CACTAAGCATGATCTCTACCCTGAGTGGCTGGGTGAGGAAGGCACCCCAGCCAGGCTGGGATGGGAGCACC-A-CATCTAGGCACCCTGTCCTGGGCCTTCTAGGTGTCCTGGCAG-G-GGGACACTGTCCCACCCTACAGAAAAGAA--GCCCAGGAATCCTG--CGCCAGTCTAGCTCTT
s panTro4.chr1_GL389124_random     23950 267 +     50403 TCTGGTCTGCAGGGGCTGGGGCTCCATAGG-AACCATA-GGGGGACAAGCT--------------------CTGCTCTGCACTCCTAGTCAGGGAG--ATGAAGCTTT-GAGGGGTGC--CACTAAACATGATCTCTGCCCTGAGTGGCTGGGTGAGGAAGGCACCCCAGCCAGGCTGGGATGGGAGCACC-A-CATCTAGGCACCCTGTCCTGGGCCTTCTAGGTGTCCTGGCAG-G-GGGACACAGTCCCACCCTACAGAAAAGAA--GCCCAGGAATCCTG--CGCCAGTCTAGCTCTT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065023 268 + 229942017 TCTGGTCTGCAGGGGCTGGGGCTCCATAGG-AACCGTAGGGGGGACAAGCT--------------------CTGCTCTGCACTCTTAGTCAGGGAG--ATGAAGCTTT-GAGGGGTGC--CACTAAGCATGATCTCTGCCCTGAGTGGCTGGGTGAGGAAGGCACCCCAGCCAGGCTGGGATGGGAGCACC-A-CATCTAGGCACCCTGTCCTGGGCCTTCTAGGTGTCCTGGCAG-G-GGGACACTGTCCCACCGTACAGAAAAGAA--GCCCAAGAATCCTG--CACCAGTTTAGCTCTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031188 267 - 229590362 TCTGGTCTGCAGGGGCTGGGGCTCCACAGG-AACCATA-GGGGGACAAGCT--------------------CTGCTCTGCACTCCTAATCAGGGAG--ACAAAGCTTT-GGAGGGTGC--CACTAAGCATGATCTCTGCCCTGAGTGGCTGGGTGAGGAAGGCATCCCAGCCAGGCTGAGATGGGAGCACC-A-CATCTAGACACCCTGTCCTGGGCCTTCTAGGTATCCTGGCAG-G-GGGACACTGTCCCACCCTACAGAAAAGCA--GCCCAGGAATCCTG--CACCAGTCTAGCTCTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913379 267 + 227556264 TCTGGTCTGCAGGGGCTGGGGCTCCACAGG-AACCATA-GGGGGACAAGCT--------------------CTGCTCTGCACTCCTAATCAGGGAG--ACAAAGCTTT-GGAGGGTGC--CACTAAGCATGATCTCTGCCCTGAGTGGCTGGGTGAGGAAGGCATCCCAGCCAGGCTGAGATGGGAGCACC-A-CATCTAGACACCCTGTCCTGGGCCTTCTAGGTATCCTGGCAG-G-GGGACACTGTCCCACCCTACAGAAAAGCA--GCCCAGGAATCCTG--CACCAGTCTAGCTCTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064055 267 - 220367699 TCTGGTCTGCAGGGCCTGGGGCTCCACAGG-AACCGTA-GGGGGACAAGCT--------------------CTGCTCTGCACTCCTAATCAGGGAG--ACAAAGCTTT-GGAGGGTGC--CACTAAGCATGATCTCTGCCCTGAGTGGCTGGGTGAGGAAGCCATCCCAgccaggctgagatgggagcacC-A-CATCTAGACACCCTGTCCTGGGCCTTCTAGGTATCCTGGCAG-G-GGGACACTGTCCCACCCTACAGAAAAGCA--GCCCAGGAATCCTG--CACCAGTCTAGCTCTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125293790 267 + 130588469 TCTGGTCTGCAGGGGCTGGGGCTCCATAGG-AACCGTA-GGGGGACAAGCT--------------------CTGCTCTGCACTCCTAGTCAGGGAG--ACAAAGCTTT-GGAGGGTGC--CACTAAGCATGATCTCTGCCCTGAGTGGCTGGGTGAGGAAGGCATCCCAGCCAGGCTGAGATGGGAGCACC-A-CATCTAGACACCCTGTCCTGGGCCTTCTAGGTATCCTGGCAG-G-GGGACACTGTCCCACCCTACAGAAAAGCA--GCCCAGGAATCCTG--CACCAGTCTAGCTCTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996081 268 - 155834243 TCCAGTCTGCAGGGGCTGGGACTACATAGG-AACTCTG-GGGGGCCCAGCT--------------------CTGCTCTGCACTCCTAGTCAGGGAG--AGGAAGCTTTAGGGGGGTGC--CACTAAGCATGATCTCTGCCCCGAGTGGCTGGGTGAGGAAGGCACCCCAGCCAAGCTGGGATGGGAGCATC-A-CACCCAGCCACCCTGTCCTGGCCCTTCTAGGTGGCCTGGCAG-A-GGGACACTGTTCCACCCTACAGAGAAGCA--GCCCAGGAATCCTG--CACCAATCTAGCTCTT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            4912 217 -     13323 ---------------------------AGG-GACCCCA-GGGGA---------------------------------------CCTAGTCAGGGAG--ATAAAGCTGT-GGGTGGTGC--CACTAAGCATGGTCTTTGCACTGAGTGTCTGGCTGAAGAAGGCACCACCACCGGGC-----TGGGAGCACCGG-CACCCAGACACCACCTCCTGGGCCTTCCAGGAGGCCTGGCAGAG-GGGACATTGCCCCATTTTACAGAAAGGCA-----CAAGAATCCTGGTCACCAGTTTAGCTATT
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152129980 169 + 156508116 ----------------------TCCACAGG-AGCTGCT-CTGGG---------------------------------------CCTGGTCAGAGAAATACAAAGCTTG-GGCTGGAGC--CACCCAGTATGGTTTCCACACCGAAG--------------------CCTGCCTCATTAGGATGGGAGAACC-A--------------------GAACTTTCCAGGATCCCTGGCAG--------------------------AAAGCAGTGTCCAGCAATCCAGGTCTCCAGTTTAACTTGT
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28607785 267 -  88915250 TCTGGTATGCAGAGGCTGAGGCTCCTTAGGTAACTGAA-GGAGCCCAGGCTGGTCCTACCCCGGACTATTATAGCCTTGCACTCCTAGTTAGGGAG--ATGAAGCTTA-GGGAGATGTAGCACTGAGTATCAGCCCCCCTCT---------------------------CCCAGGCTTGGGTGGGAGCATC-AGCACCTAGGCACCACCTCCTGGGCCTTGCAGGAGCCCTGGCAT-ACTACATACTGACCCATGTTACAGAAGAGAA--GCTCAGGAATCCTGCTCACCACTTTAGACCTT
i canFam3.chr5                 C 0 C 0
e nasLar1.chrUn_JMHX01284760v1      1452 483 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=4095.000000
s hg38.chr1_KI270714v1_random      24593 1 +     41717 A
s panTro4.chr1_GL389124_random     24217 1 +     50403 A
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650164                 17422 1 +     42585 A
i panPan1.JH650164             N 0 I 2945
s ponAbe2.chr1                 224065291 1 + 229942017 A
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031455 1 - 229590362 A
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913646 1 + 227556264 A
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064322 1 - 220367699 A
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294057 1 + 130588469 A
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996349 1 - 155834243 A
i calJac3.chr7                 C 0 I 97
s mm10.chr4                    152130149 1 + 156508116 A
i mm10.chr4                    C 0 C 0
e canFam3.chr5                  28608052 0 -  88915250 C
e nasLar1.chrUn_JMHX01284760v1      1452 483 +      3282 I
e micMur1.scaffold_20500            5129 1 -     13323 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=553053.000000
s hg38.chr1_KI270714v1_random      24594 210 +     41717 AAAAAGGATGC---CTAGGGAAGTCACC--GGGGAG---------------GG---------------AGGGGGAAACATGGTG--------GGTCAC---AGCTTTGCC---------------CCCATAGCCAGGCTCTGGCTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTCCTGGCATATCTAAGAAGGCTTCAG-GTCTGTGCT--GCTTGGAAAGACAAGAGAAAGACGTGGAGAGAGGAAGAGAGGCTCAGGATAGAC
s panTro4.chr1_GL389124_random     24218 210 +     50403 AAAAAGGATGC---CTAGGGAAGTCACC--GGGGAG---------------GG---------------AGGGGGAAACATGGTG--------GGTCAC---AGCTTTGCC---------------CCCATAGCCAGGCTCTGGCTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTCCTGGCATATCTAAGAAGGCTTCAG-GTCTGTGCT--GCTTGGAAAGACAAGAGAAAGACGTGGAGAGAGGAAGAGAGGCTCAGGATAGAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065292 210 + 229942017 AAAAAGGATGC---CTAGGGAAGTCACC--GGGGAG---------------GG---------------AGGGGGAAACATGGTG--------GGTCAC---AGCTTTGCC---------------CCCATAGCCAGGCCCTGGCTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTCCTGGCATATCTAAGAAGGCTTCAG-GTCTGCGCT--GCTTGGAAGGACAAGAGAAAGACGTGGAGAGAGGAAGAGAGGCTCAGGATAGAC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031456 195 - 229590362 AAAAAGGATGC---CTAGGGAAGTCACC--GGGGAG---------------GG---------------AGGGGAAAACA--------------------------TTGCC---------------CCCATAGCCAGGCCCCGGGTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTGCTGGCATATCTAAGAAGGCTTCAG-GTCTGTGCT--GCTTGGAAGGACAAGAGAAAGACATGGAGAGAGGAAGAGAGGCTCAGGATAGAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913647 195 + 227556264 AAAAAGGATGC---CTAGGGAAGTCACT--GGGGAG---------------GG---------------AAGGGAAAACA--------------------------TTGCC---------------CCCATAGCCAGGCCCCGGGTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTGCTGGCATATCTAAGAAGGCTTCAG-GTCTGTGCT--GCTTGGAAGGACAAGAGAAAGACATGGAGAGAGGAAGAGAGGCTCAGGATAGAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064323 195 - 220367699 AAAAAGGATGC---CTAAAGAAGTCAcc--ggggag---------------gg---------------aggggaaaaca--------------------------TTGCC---------------CCCATAGCCAGGCCCCAGGTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTGCTGGCATATCTAAGAAGGCTTCAG-GTCTGTGCT--GCTTGGAAGGACAAGAGAAAGacatggagagaggaagagaggctcAGGATAGAg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294058 195 + 130588469 AAAAAGGATGC---CTAGGGAAGTCACC--GGGGAG---------------GG---------------AGGGGAAAACA--------------------------TTGCC---------------CCCATAGCCAGGCCCCGGCTGGC----CCAGGG---CCCCTGGCAGG---------------------------------------------AACTGGCTAGGAAGAGTTCCTGGCATATCTAAGAAGGCTTCAG-GTCTGTGCT--GCTTGGAAGGACAAGAGAAAGGCATGGAGAGAGGAAGAGAGGCTCAGGATAGAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996447 211 - 155834243 AAAAAGGATGC---CTAGGGAAGCCACT--GGGGAG---------------GG---------------AGGGGAAAACATGGTG--------GGTCAC--TAGCTTTGCC---------------CCCATAGCCAGGCACTTGCTGGC----CCAGGG---ACCCTGGCAGG---------------------------------------------AACTGGCTAAAATGAGTTCTTGGCATATCTAAGAAGGGCTCAG-GTCTGTGCT--ACTTGGAAGGACAAGAGAAAGAGGTGGGGAGAGGAAGAGAGGCTCAGCACAGAC
i calJac3.chr7                 I 97 C 0
s micMur1.scaffold_20500            5130 184 -     13323 TAAAAGGATGC---TTAGGGAAGTCACCAGGAGGAG---------------GG---------------AGGGGAAACCA----------------------AGACGGGTC---------------CCCAGGGCCAGGCT------------------------CCTGTCAGG---------------------------------------------ATCTGGCTAGGAGGAGTCCCTGACATGCCTGAAAAGGGCTCAG-GTCTGTACT--GCTTGGAGTGACCAGATAAAGAGTTGGGGGAAGGAAGAGGGTCTCAGGATAGAC
i micMur1.scaffold_20500       I 1 I 1
s mm10.chr4                    152130150 294 + 156508116 AGCAAGGATGC---GAAGCCCAGTGGT---GGAGAGTGTACCTAGCATGCTGG---------------AGGGGGGCCTGAGTTATCTTCCACAATCACCTCACCATCACcacacacacacacacacacacacacacacacacacacac----acaGAG---CCTATGGAAAGGAAGGTGTGATGGTTTCTGGGACTTTGTCTTCCCCAGCCAAGCACAGCTGATCAGTAAGAGT-CCTGTCAAGGCTGAGAGAAGCTCAGAGGGTGTGCTTAGCTCGAAGGACCAAGAGTTAGAGGTTGGGAGGTGACTGAAGATGCAGGGCA---
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608052 245 -  88915250 ACAAAGGATGTGGGGCAGGGCAGGGACG--GGGAAG---------------GGGTCATCAGGAGGGAAAGGGCAGGGCATGGTG--------GGTCAC--TGGCCTAGTC---------------CCCATAGCCAGGTTCTAGCTGGCCTGGCCTGGGACCCCCCTGGGGGG----------------------------------GGGGCACGGGGATCTGGCTGGGAAGAGTCCCTCAGGCATCTAAGAG---CTCGG-GCTGTAGCT-AGCTTGAAAGAACAAGAGAAAGAGGTGAGGAGCAGAAGAGAGACTTAGGACAGAT
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      1452 483 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=5401.000000
s hg38.chr1_KI270714v1_random      24804 3 +     41717 --AGG
s panTro4.chr1_GL389124_random     24428 3 +     50403 --AGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065502 3 + 229942017 --AGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031651 3 - 229590362 --GGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913842 3 + 227556264 --GGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064518 3 - 220367699 --ggg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294253 3 + 130588469 --GGG
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      1935 3 +      3282 --GGG
i nasLar1.chrUn_JMHX01284760v1 I 483 I 127
s calJac3.chr7                 114996658 3 - 155834243 --AGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5315 3 -     13323 --AGA
i micMur1.scaffold_20500       I 1 C 0
s canFam3.chr5                  28608297 4 -  88915250 ATGG-
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152130444 0 + 156508116 C
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=359126.000000
s hg38.chr1_KI270714v1_random      24807 150 +     41717 GGCAGGGGGAAGGGTGGCCAGCTGCGGGGCCTCTCTGAAGCTGGTTCGACTTC-AAGTGTCCCTCCAGTACCAGCTCATCAGAAACACCAGCACCAGCTCATGGGAAACACCAG-CGCCAGAGCTGGAAGGCCCTTTCTAGCCCGTGGGAGG
s panTro4.chr1_GL389124_random     24431 150 +     50403 GGCAGGGGGAAGGGTGGCCAGCTGCAGGGCCTCTCTGAAGCTGGTTCGACTTC-AAGTGCCCCTCCAGTACCAGCTCATCAGAAACACCAGCACCAGCTCATGGGAAACACCAG-CGCCAGAGCTGGAAGGCCCTTTCTAGCCCGTGGGAGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065505 150 + 229942017 GGCAGGGGGAAGGGCGGCCAGCTGTGGGGCCTCTCTGAAGCTGGTTCTACTTC-AAGTGTCCCTCCAGTACCAGCTCATCAGAAACACCAGCACCAGCTCATGGGAAACACCAG-CCCCAGAGCTGGGAGGccctttctagctggtgggagg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031654 127 - 229590362 GGCAGGGGGAAGAGTGGCCAGCTGCGGGGCCTCTCTGAAGCTGGTTCtacttc-aagtgttcct-----------------------ccagcaccagctcattggaaacgccag-cgccagagctgggagaccctttctagccggtgggagg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913845 127 + 227556264 GGCAGGGGGAAGAGTGGCCAGCTGCGGGGCCTCTCTGAAGCTGGTTCtacttc-aagtgttcct-----------------------ccagcaccagctcattggaaacgccag-cgccagagctgggagaccctttctagccggtgggagg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064521 127 - 220367699 ggcagggggAAGAGTGGCCAGCTGCGGGGCCTCTCTGAAGCTGGTTCTACTTC-AAGTGTTCCT-----------------------CCAGCACCAGCTCATTGGAAACGCCAG-CGCCAGAGCTGGGAGACCCTTTCTAGCCGGTGGGAgg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294256 127 + 130588469 GGCAGGGGGAAGGGTGGCCAGCTTCGGGGCCTCTCTGAAGCTGGTTCTACTTC-AAGTGTTCCT-----------------------CCAGCACCAGCTCATTGGAAATGCCAG-CGCCAGAGCTGGGAGAccctttctagccggtgggagg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996661 125 - 155834243 GGCA-GAGGACCAGCGGCCAGCG--GGGGCCTCTCTGAAGCTGGTTCTACTTC-AAGTGTCCCT-----------------------CCAGCACCAGCTCATCCCAAATGCCAGTCGCCAGAGCTGGGAGGCCCTTTCTAGCCGTTGGGAGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5318 120 -     13323 GGCAGGAAGAAGGTTGGCCAGCAGCCCTGCCTCCTTGAAGCTAGTTCTATTGC-TAGAGCTTCC---------------------------CTCCAGCTCATCAG-AGCACCAG-C-CCAGAGCTGGG-GGCCTTCCCTAGCCAGTGGCAGG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130444  82 + 156508116 --CAGGAGGAAGAAAGG--AGCACTCGGTCCCTCCCGCAGGTGGCTC--------------------------------------------------------AGAAACTTCAGCCACTAGAGCCGGGAGGCTCGCCCTAAC----------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608301 129 -  88915250 GGCAGGAAGAAGGTTGGCCAGCAGC--TGCCTCCTTGAAACTAGTTCTCCCTCTGAGAGCTCCC---------------------CATTAGCACCAGCTCATTAGAAACACCAGCCAGCAGAGCTGGGAGGCCTTCTCTGCTGGATGGGACA
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      1938 127 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=4190.000000
s hg38.chr1_KI270714v1_random      24957 1 +     41717 C
s panTro4.chr1_GL389124_random     24581 1 +     50403 C
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065655 1 + 229942017 c
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031781 1 - 229590362 c
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913972 1 + 227556264 c
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064648 1 - 220367699 c
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294383 1 + 130588469 c
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      2065 1 +      3282 c
i nasLar1.chrUn_JMHX01284760v1 I 127 I 399
s calJac3.chr7                 114996786 1 - 155834243 C
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5438 1 -     13323 C
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28608430 1 -  88915250 T
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152130526 0 + 156508116 C
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=66123.000000
s hg38.chr1_KI270714v1_random      24958 31 +     41717 aggcccagagaggggaggggacttgtccagg---
s panTro4.chr1_GL389124_random     24582 31 +     50403 aggcccagagaggggaggggacttgtccagg---
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065656 31 + 229942017 aggcccagagaggggaggggacttgcccagg---
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220031782 31 - 229590362 aggcccagagaggggaggggacttgcccagg---
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221913973 31 + 227556264 aggcccagagaggggaggggacttgcccagg---
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064649 31 - 220367699 aggcccagagaggggaggggacttgcccagg---
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294384 31 + 130588469 aggcccagagaggggaggggacttgcccagg---
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996787 17 - 155834243 ACGCCAAGGGGAGGAAG-----------------
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5439 10 -     13323 AGGCCCAGAG------------------------
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28608431 34 -  88915250 GGGCCTAGGGACGGAAGGGGACCGGACTGAGAGG
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152130526  0 + 156508116 C
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2066 399 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22276957 7178 -  28733288 T

a score=186244.000000
s hg38.chr1_KI270714v1_random      24989 89 +     41717 ccacacagctagagggtgggaggcaggcccagaTTGGGGAAGGGACTT--GCCCCAGGC--TGTGCAGCCCGGTCCTGCTTTGGCAGGACCTC
s panTro4.chr1_GL389124_random     24613 89 +     50403 ccacacagctagagggtgggaggcaggcccagaTTGGGGAAGGGACTT--GCCCCAGGC--TGTGCAGCCCGGTCCTGCTTTGGCAGGACCTC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065687 89 + 229942017 ccacacagctagggggtgggaggcaggCCCAGATTGGGGAAGGGACTT--GCCCCAGGC--CGTGCAGCCCGGTCCTGCTTTGGCAGGACCTC
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269779 90 -  28733288 CCACACA-TTAGGGGGTGGGAGGCAGGCCCAGACTGGGGAAGGGAATTCGCCTCCAGGC--CGTGCAGCCCGGTCCTGCTTTGGCAGGACCTC
i nomLeu3.chr24                T 7178 C 0
s rheMac3.chr1                 220031813 80 - 229590362 ccacacagct--------ggaggcaggcccagactGGGGAGGGGACTT--GCCCCAGGA---GCACAGCCCGGTCCTGCTTTGGCAGGACCTC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221914004 88 + 227556264 ccacacagctagggggtgggaggcaggCCCAGACTGGGGAGGGGACTT--GCCCCAGGA---GCACAGCCCGGTCCTGCTTTGGCAGGACCTC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064680 88 - 220367699 ccacacagctaggGGGTGGGAGGCAGGCCCAGACTGGGGAGGGGACTT--GCCCCAGGA---GCACAGCCCGGTCCTGCTTTGGCAGGACCTC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294415 88 + 130588469 ccacacagctagggggtgggaggcaggCCCAGACTGGGGAGGGGACTT--GCCCCAGGA---GCGCAGCCGCGCCCTGCTTTGGCAGGACCGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114996804 61 - 155834243 ---------------------------CCAAGAGGCGGCAAGGGACTT--GCCTCAGGC--CACACAGCCC-ATCCTGCTCTGGCAGGACTTC
i calJac3.chr7                 C 0 I 274
s micMur1.scaffold_20500            5449 52 -     13323 ----ACAGTT--------------------------------GGACTT--GCCGCAGGT--TACACAGCCCAGTCCCACTCTGGCAGGAATG-
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130526 78 + 156508116 ---------TAAAGAAAGAGAAGGCCGCCCAGAGTGGGCAGGTGCCTC--GCCGAAAGCCACACTCAGCCCAGTCCTGCCGTGGGATGG----
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608465  8 -  88915250 -------------------------------------------------------------------------TCACACTC------------
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2066 399 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=744253.000000
s hg38.chr1_KI270714v1_random      25078 169 +     41717 AAGCAACCCAGAGCCCTCTC-TTAGGGTCAAGTACTCAATGGGGTAGGGG---TGGCCGGAAGACCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGGCGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCACCCCTCAACCTGCCCCT
s panTro4.chr1_GL389124_random     24702 170 +     50403 AAGCAACCCAGAGCCCTCTC-TTAGGGTCAAGTACTCAATGGGGTAGGGG---TGGCCGGAAGACCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGAGGGGGGCGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCACCG-CCCCCCACCCCTCAACCTGCCCCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065776 169 + 229942017 AAGCAACCCAGAGCCCTCTC-TTATGGCCAAGTACTCAGTGGGGTAGGGG---TGGCTGGAAGACCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGCTGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCACCCCTCAACCTGACCCT
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22269869 170 -  28733288 GAGCAACCCAGAGCCCTCTC-TTAGGTTCAAGTACTCAGTGGGGTAGGGG---TGGCCGGAAGACCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGGCGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCGCCCCCCCACCCCTCAACCTGCCCCT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220031893 169 - 229590362 CAGCAACCCAGAGCCCTCTC-TTAGGGTCAAGTACTCAATGGGGTAGGGG---TGGCCGGAAGAGCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGGTGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCACCCCTCAACCTGCTCCT
i rheMac3.chr1                 C 0 M 501
s macFas5.chr1                 221914092 169 + 227556264 GAGCAACCCAGAGCCCTCTC-TTAGGGTCAAGTACTCAATGGGGTAGGGG---TGGCCGGAAGAGCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGGTGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCACCCCTCAACCTGCTCCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064768 169 - 220367699 GAGCAACCCAGAGCCCTCTC-TTAGGGTCAAGTACTCAACGGGGTAGGGG---TGGCCAGAAGAGCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGGCGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCACCCCTCAACCTGCTCCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294503 169 + 130588469 GAGCAACCCAGAGCCCTCTC-TTAGGGTCAAGTACTCAATGGGGTAGCGG---TGGCCGGAAGAGCATGTAG---AAGAGGAAGGACCCGGGCAGTGACAGCTGGGGA-GGGGGCGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCAGCCCTCAACCTGCCCCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114997139 161 - 155834243 AAACAACTCAGAGCCCTCTCTTTAGGATCAAGTACTCAATGGGGTAGGGGC--TGGCAGGAAGAGC------------AAGAAGGA-CGGGGCAGTGGCAGCAGGGGA-GGGGGCGGTGTCTAGATTTCCCTCCCCTTTCAGGGCTAGCGCCG-CCCCCCACCCCTCAACCCGCCCCT
i calJac3.chr7                 I 274 C 0
s micMur1.scaffold_20500            5501 172 -     13323 AAGCCACCCAGAGACTTCCC-TTAGGGTCAAGTACTCAGTGGGGCAGGGGC--TGGCAGGAAGGACAAATGGGAAAGGAGGAAGGGCCAGGGCAGTCACAGCTGGGGA-AGGGGCGGTGTCTAGATTGCCCTCCTCTTTCAGGCCTAGCGCCG-CCCCCCACCCCGCATGCCGCACT-
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130604 158 + 156508116 AAGCAACTCAAAACTTTCCT-CC----CCTTGTCACCAACAGGGTAGGGTC--TGGAAAAAAGAGC---------CAGAAGAAGGACCAGGGGCGTCGCAGCTGGGGA-GGGGGCGGTCTCTAG-TTTCCCTCCCCCTTTGCAGCTGGCGCCG--CCCCCACCCCGCATCCCGCCCCT
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608473 169 -  88915250 AAGCGACTCAGAACCTTCCC-TTCGGGTCGAGCCCTCACTGGGCTGGGGGCTGCAGCAGGAAGAGCAAGTAGGAAAAGAGAAGGCACTAGGGCAGTCGCAGCTGGGAG-GGGAGCGATGGCGAGGTTTCCCACCCC-TCCAGGGCTAGCGCCG-CCCCCCACCCT-----CCGCCCCT
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2066 399 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=504953.000000
s hg38.chr1_KI270714v1_random      25247 110 +     41717 ACTCACTGCCGGTGGGCGAGGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAGGggcagaggcgggaccagcggcggcgaactcgcggcctcgggcaggggc
s panTro4.chr1_GL389124_random     24872 110 +     50403 ACTCACTGCCGGTGGGCGAGGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAGGGGCAGAGGCGGGACCGGCGGCGGCGAACTCGCGGCCTCGGGCAGGggc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224065945 110 + 229942017 ACTCACTGCCGGTGGACGAGGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAGGGGCAGAGGCGGGGCCGGCGGTGGCGAACTCGCGGCCTCGGGCAGGggc
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270039 110 -  28733288 ACTCACTGCCGGTGGACGAGGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAGAggcagaggcggggccggcggcggcgaactcgcggcctcgggcaggggt
i nomLeu3.chr24                C 0 C 0
s macFas5.chr1                 221914261 110 + 227556264 ACTCACTGCCGGTGGATGAAGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCTCTCGAggggcagaggcggggccggtggcagcgaactcgcggcctcgggcaggggc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211064937 110 - 220367699 ACTCACTGCCGGTGGACGAAGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAggggcagaggcggggccggtggcagcgaactcgcggcctcgggcaggggc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294672 110 + 130588469 ACTCACTGCCGGTGGACGAAGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAGGGGCAGAGGCGGGGCCGGTGGCAGCGAACTCgcggcctcgggcaggggc
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114997300 110 - 155834243 ACTCACTGCCGGTGGACGAGGAGGAGCGGCGCTGCCCGCAGCCAGGGCCAGCGCCCTCGAGGGGCAGAGGTGGGGCGGGCGGCAGTGAACTCGCGGCCTCGGGCAGGggc
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5673 110 -     13323 ACTCACTGCCGGTGGACGACGAGGAGCGACGCTGTCCGCAGCCGGAGCCAGCGCCCTCAAAGGGCAGAGGCGGGGCAGGCGGCGGCGAGCTCAGGGCCTCTGGCAGGggc
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130762 110 + 156508116 ACTCACTGCCAGTAGAAGACGAGGAACGACGCTGCCCGCAGGCTGCGCCCGCGCCCTCGATGGGCAGAGGTGGGGCGGGCGGCGGCGAACTCAGGGCCTCGggcagcggc
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608642 110 -  88915250 ACTCACTGCCAGTGGACGAGGAGGAGCGACGCTGCCCGCAGCCAGGGCCGGCGCCCTCGAAGGGCAGGGGCGGAGCAGGCGGCGGCGAGCAGAGGGCCTCcggcaggggc
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2066 399 +      3282 I
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=17446.000000
s hg38.chr1_KI270714v1_random      25357 3 +     41717 ggc
s panTro4.chr1_GL389124_random     24982 3 +     50403 ggc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066055 3 + 229942017 ggc
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270149 3 -  28733288 ggc
i nomLeu3.chr24                C 0 C 0
s macFas5.chr1                 221914371 3 + 227556264 ggc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065047 3 - 220367699 ggc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294782 3 + 130588469 ggc
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      2465 3 +      3282 gga
i nasLar1.chrUn_JMHX01284760v1 I 399 I 138
s calJac3.chr7                 114997410 3 - 155834243 ggc
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5783 3 -     13323 ggc
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130872 3 + 156508116 ggc
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608752 3 -  88915250 ggc
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=350902.000000
s hg38.chr1_KI270714v1_random      25360 86 +     41717 ggcggcggcggcggcggcagca------------gctgctgcTCCCTGGACGCCTTGGGGTCCGCGGCGCAGCCATTAGGCACGTGGTTCCCAGGGAG
s panTro4.chr1_GL389124_random     24985 98 +     50403 ggcggcggcggcggcggcagcagcagcagcagcCGCTGCTGCTCCCTGGACGCCTTGGGGTCCGCGGCGCAACCGTTAGCCACGTGGTTCCCAGGGAG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066058 89 + 229942017 ggcggcggcggcggcgggggcggcg---------ggggcagcTCCCTGGACGCCTTGGGGTCCACGGCGCAGCCGTTAGGCACGTGGTTCCCAGGGAG
i ponAbe2.chr1                 C 0 I 423
s nomLeu3.chr24                 22270152 83 -  28733288 ggtggcggcgggggcggcg---------------gtggcagcTCCCTGGACGCCTTGGGGTCCGCGGCGCAGCCGTTAGGCACGTGGTTCCCAGGGAG
i nomLeu3.chr24                C 0 C 0
s macFas5.chr1                 221914374 83 + 227556264 ggtggcggcgggggcggcg---------------gtggcAGCTCCCTGGACGCCTTGGGGTCCGCGGCACAGCCGTTAGGCACGTGGTTCCCTGGGAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065050 83 - 220367699 ggtgggggcgggggcggcg---------------gtggcAGCTCCCTGGACGCCTTGGGGTCCGCGGCACAGCCGTTAGGCACGTGGTTCCCTGGGAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294785 83 + 130588469 ggtggcggcggtggcggcg---------------gtggcagcTCCCTGGACGCCTTGGGGTCTGCGGCACAGCCGTTAGGCACGTGGTTCCCTGGGAG
i chlSab2.chr20                C 0 I 2
s calJac3.chr7                 114997413 83 - 155834243 ggcggcggcgggggcggcg---------------gcggTAGCTCCCTGGACGCCTTAGGGTCCGCGGCGCAGCCATTAGGAACGTGGTTCCCGGGGAG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5786 83 -     13323 ggcggcggcgggggcggcg---------------gcggcagcTCCCTGGACGCCTTGGGGTCCGCGGCGCAGCCGTTATGCACGTGGTTCCCGGGGAG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130875 77 + 156508116 ------ggcggcggtggcg---------------gcggcagcTCCCTGGACGCTTTGGAGTCCGCTGAGCAGCCGTTGTGCACGTGGTTCCCGGGGAG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608755 83 -  88915250 gggggcggcgggggcggcg---------------ggggcagcTCCCTGGACGCCTTGGGGTCCGCGGCGCAGCCGTTATGCACGGGGTTCCCGGGGAG
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=-2008.000000
s hg38.chr1_KI270714v1_random      25446 2 +     41717 TT-
s panTro4.chr1_GL389124_random     25083 2 +     50403 TT-
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22270235 1 -  28733288 -C-
i nomLeu3.chr24                C 0 I 1
s macFas5.chr1                 221914457 1 + 227556264 -C-
i macFas5.chr1                 C 0 I 1
s papAnu2.chr1                 211065133 1 - 220367699 -C-
i papAnu2.chr1                 C 0 I 1
s calJac3.chr7                 114997496 1 - 155834243 -C-
i calJac3.chr7                 C 0 I 2
s micMur1.scaffold_20500            5869 2 -     13323 -CA
i micMur1.scaffold_20500       C 0 C 0
e mm10.chr4                    152130952 0 + 156508116 C
e canFam3.chr5                  28608838 0 -  88915250 C
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e chlSab2.chr20                125294868 2 + 130588469 I
e ponAbe2.chr1                 224066147 423 + 229942017 I

a score=300.000000
s hg38.chr1_KI270714v1_random      25448 3 +     41717 CCG
s panTro4.chr1_GL389124_random     25085 3 +     50403 CCG
i panTro4.chr1_GL389124_random C 0 C 0
e mm10.chr4                    152130952 0 + 156508116 C
e canFam3.chr5                  28608838 0 -  88915250 C
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e micMur1.scaffold_20500            5871 0 -     13323 C
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e calJac3.chr7                 114997497 2 - 155834243 I
e macFas5.chr1                 221914458 1 + 227556264 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e chlSab2.chr20                125294868 2 + 130588469 I
e papAnu2.chr1                 211065134 1 - 220367699 I
e nomLeu3.chr24                 22270236 1 -  28733288 I
e ponAbe2.chr1                 224066147 423 + 229942017 I

a score=463.000000
s hg38.chr1_KI270714v1_random      25451 3 +     41717 CCT
s panTro4.chr1_GL389124_random     25088 3 +     50403 CCT
i panTro4.chr1_GL389124_random C 0 C 0
s papAnu2.chr1                   9301471 3 + 220367699 CCG
i papAnu2.chr1                 n 1 C 0
e mm10.chr4                    152130952 0 + 156508116 C
e canFam3.chr5                  28608838 0 -  88915250 C
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e micMur1.scaffold_20500            5871 0 -     13323 C
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e calJac3.chr7                 114997497 2 - 155834243 I
e macFas5.chr1                 221914458 1 + 227556264 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e chlSab2.chr20                125294868 2 + 130588469 I
e nomLeu3.chr24                 22270236 1 -  28733288 I
e ponAbe2.chr1                 224066147 423 + 229942017 I

a score=3476.000000
s hg38.chr1_KI270714v1_random      25454 4 +     41717 GCGG
s panTro4.chr1_GL389124_random     25091 4 +     50403 GCGG
i panTro4.chr1_GL389124_random C 0 C 0
s papAnu2.chr1                   9301474 4 + 220367699 GCGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                  5292509 4 - 130588469 GCGG
i chlSab2.chr20                n 2 C 0
s calJac3.chr7                  40835670 4 + 155834243 GCAG
i calJac3.chr7                 n 2 C 0
e mm10.chr4                    152130952 0 + 156508116 C
e canFam3.chr5                  28608838 0 -  88915250 C
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e micMur1.scaffold_20500            5871 0 -     13323 C
e rheMac3.chr1                 220032062 501 - 229590362 M
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e macFas5.chr1                 221914458 1 + 227556264 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22270236 1 -  28733288 I
e ponAbe2.chr1                 224066147 423 + 229942017 I

a score=224548.000000
s hg38.chr1_KI270714v1_random      25458 132 +     41717 GGATGAAGGTGGGGGCTCACCTCCCAGCTTAGGGAGAGGCTGAGGGGTCTGGGTCACATCTGGCCGGGGGCGCGTGCAGAGCCGCGGTCAGGTGTGGCAGAGCAGTTGGCGCCCACGTAGCATCCGCGACGA
s panTro4.chr1_GL389124_random     25095 132 +     50403 GGATGAAGGTGGGGGCTCACCTCCCAGCTTAGGGAGAGGCTGAGGGGTCTGGGTCACATTTGGCCGGGGGCGCGTGCAGAGCCGCGGTCAGGTGTGGAAGAGTAGTTGGCGCCCACGTAGCATCCGCGACGG
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                   9557100 132 + 229590362 GGATGAAGGTGGGGGCTCAGCTCCCAGCTTAGGGAGAGGCGCAGGGGGCGGGGTCACATCTGGCCTGGGGCGGGTGCAGAGCTGCGGCCAGGTGTGGCAAGGTAGTTGGCACCCCCGTGGTATCCGCCACGG
i rheMac3.chr1                 n 0 C 0
s macFas5.chr1                   5640717 132 - 227556264 GGATGAAGGTGGGGGCTCAGCTCCCAGCTTAGGGAGAGGCGCAGGGGGCGGGGTCACATCTGGCCTGGGGCGGGTGCAGAGCTGCGGCCAGGTGTGGCAAGGTAGTTGGCACCCCCGTGGTATCCGCGACGG
i macFas5.chr1                 n 1 C 0
s papAnu2.chr1                   9301478 132 + 220367699 GGATGAAGGTGGGGGCTCAGCTCCCAGCTTAGGGAGAGGCGCAGGGGGCGGGGTCACATCTGGCCTGGGGCGGGTGCAGAGCTGCGGCCAGGTGTGGCAAGGTAGTTGGCGCCCCCGTGGTATCCGCGACGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                  5292513 132 - 130588469 GGATGAAGGTGGGGACTCAGCTCCCAGCTTAGGGAGAGGCGCAGGGGGCGGGGTCACATCTGGCCTGGGGCGGGTGCAGAGCTGCGGCCAGGTGTGGCAAGGTAGTTGGCGCCCCCGTGGTATCCGCGACGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                  40835674 131 + 155834243 GGATGAAGGTGGGGACTTAGCTCCCAGTTTAGGGAGAGGCGCAGGGGGCGGGGCCACATCTGGGCGGGGGCGGGCGCGGAGAGGCGGCCAGGTGTGGCAGAGTAGTTGGCGCCCG-GTAGCATCCGCGACGG
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152130952   0 + 156508116 C
e canFam3.chr5                  28608838   0 -  88915250 C
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e micMur1.scaffold_20500            5871   0 -     13323 C
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22270236   1 -  28733288 I
e ponAbe2.chr1                 224066147 423 + 229942017 I

a score=3166.000000
s hg38.chr1_KI270714v1_random      25590 2 +     41717 CT
s panTro4.chr1_GL389124_random     25227 2 +     50403 CT
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                   9557232 2 + 229590362 CT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                   5640849 2 - 227556264 CT
i macFas5.chr1                 C 0 n 0
s papAnu2.chr1                   9301610 2 + 220367699 CT
i papAnu2.chr1                 C 0 n 0
s chlSab2.chr20                  5292645 2 - 130588469 CT
i chlSab2.chr20                C 0 n 0
s calJac3.chr7                  40835805 2 + 155834243 CC
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152130952 2 + 156508116 CA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608838 2 -  88915250 CA
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e micMur1.scaffold_20500            5871 0 -     13323 C
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22270236 1 -  28733288 I
e ponAbe2.chr1                 224066147 423 + 229942017 I

a score=6600.000000
s hg38.chr1_KI270714v1_random      25592 1 +     41717 G
s panTro4.chr1_GL389124_random     25229 1 +     50403 G
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066570 1 + 229942017 G
i ponAbe2.chr1                 I 423 C 0
s nomLeu3.chr24                 22270237 1 -  28733288 G
i nomLeu3.chr24                I 1 C 0
s rheMac3.chr1                   9557234 1 + 229590362 G
i rheMac3.chr1                 C 0 n 0
s macFas5.chr1                 221914459 1 + 227556264 G
i macFas5.chr1                 I 1 C 0
s papAnu2.chr1                 211065135 1 - 220367699 G
i papAnu2.chr1                 I 1 C 0
s chlSab2.chr20                125294870 1 + 130588469 G
i chlSab2.chr20                I 2 C 0
s calJac3.chr7                  40835807 1 + 155834243 G
i calJac3.chr7                 C 0 T 19448
s micMur1.scaffold_20500            5871 1 -     13323 G
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130954 1 + 156508116 G
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608840 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=215027.000000
s hg38.chr1_KI270714v1_random      25593 49 +     41717 CGCCGCCTGCGGGGGAGCGGAGGGGCCTTCGAGCGAGCCGCGGGCGGCA
s panTro4.chr1_GL389124_random     25230 49 +     50403 CGCCGCCTGCGGGGGAGCGGAGGGACCTTCGAGTGAgccgcgggcggca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066571 49 + 229942017 CGCCGCCTgcgggggagcggaggggccttcgagtgagccgcgggcggca
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270238 49 -  28733288 CGCCGCCTgcgggggagcggaggggccttcgagtgagccgcgggcggca
i nomLeu3.chr24                C 0 C 0
s macFas5.chr1                 221914460 49 + 227556264 CGCCGCCTGCGGGGGAGCAGAGGGGCCTTCGAGTGAGCCGCGGACGGCA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065136 49 - 220367699 CGCCGCCTGCGGGGGAGCAGAGGGGCCTTCGAGTGAGCCGCGGACGGCA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294871 49 + 130588469 CGCCGCCTGCGGGGGAGCAGAGGGGCCTTCGAGTGAGCCgcggacggca
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114997499 49 - 155834243 CGCCGCCTGCGGGGGAGCGGAGGGGCCTTCGAGTGAGCCGCGGGCTGCA
i calJac3.chr7                 I 2 C 0
s micMur1.scaffold_20500            5872 49 -     13323 CGCCGCCTGCGGGGGAGCGGAGGGACCAGCGAGTGAGCAGCGGGCGGCA
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152130955 49 + 156508116 CGCCGCCTGCGGGGGAGCAGAGGGGCCGGAGAGTGAGGGGCGTGGGACG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608841 49 -  88915250 CGCCGCCTGCGGGGGAGCGGAGGAGCTGGCGAGTGAGAAGCCGGAGGCC
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e nasLar1.chrUn_JMHX01284760v1      2468 138 +      3282 I
e rheMac3.chr1                   9557235  0 + 229590362 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=6600.000000
s hg38.chr1_KI270714v1_random      25642 1 +     41717 G
s panTro4.chr1_GL389124_random     25279 1 +     50403 g
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066620 1 + 229942017 g
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270287 1 -  28733288 g
i nomLeu3.chr24                C 0 C 0
s macFas5.chr1                 221914509 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065185 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294920 1 + 130588469 g
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01284760v1      2606 1 +      3282 g
i nasLar1.chrUn_JMHX01284760v1 I 138 N 0
s calJac3.chr7                 114997548 1 - 155834243 G
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5921 1 -     13323 G
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152131004 1 + 156508116 G
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608890 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e rheMac3.chr1                   9557235 0 + 229590362 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=1360033.000000
s hg38.chr1_KI270714v1_random      25643 334 +     41717 GGCCGAGGCGCGGGCAGCCGGCGGGCGCGGGCTGGCGGGCACGCACCTCCTCGCGGTGCGCCATGCCCGGGCGTGCGACCAGCGTCTCGCCGGGGCAGCGGCCCAGCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAAGCGCGGGGCTTGCGGCTGGAGTCCTGCCTCCGTAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTCGGCTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCAACTGCCCGGTAGGCGCCCCCCACGCCTCCCCACCCAGCTCTTCACCTCCT--GGGAACTCGCGGCCAGCGGCCGTCGGGGGGTGCAG--------------C-AGCCGA
s panTro4.chr1_GL389124_random     25280 334 +     50403 ggccgaggcgcgggcagccggcgggcgcgggctggcgggcACGCACCTCCTCGCTGTGCGCCATGCCCGGGCGTGCGACCAGCGTCTCGCCGGGGCAGCGGCCCAGCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAAGCGCGGGGCTTGCGGCTGGAGTCCTGCCTCCGTAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTCGGGTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCAACTGCCCGGTAGGCGCCCCCCACGCCTCCCCACCCAGCTCTTCACCTCCT--GGGAACTCGCGGCCAGCGGCCGTCGGGGGGTGCAG--------------C-AGCCGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066621 334 + 229942017 ggccgaggcgcgggcagcaggcgggcgcgggctggcgggcACGCACCTCCTCGCTGTGCGCCATGCCTGGGCGTGCGGCCAGGGTCTCGCCGGGGCAGCGGCCCATCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAGGCACGGGGCTTGCGGCTAGAGTCCTGCCTCCGCAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTCAGCTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCACCTGCCCGGTAGGCGCCCCCCACGCCTCCCCACCCAGCTCTTCACCTCCT--GGGGACTCGCGGCCAGCGGCCGTTGAGGGGTGCAG--------------C-AGCCGA
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270288 334 -  28733288 ggccaagacgcgggcagccggcgggcgcgggctggcgggcATGCACCTCCTCGCTGTGCGCCATGCCCGGGCGTGCGGCCAGCGTCTCGCCGGGGCAGCGGCCCAGCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAGGCGCGGGACTTGCGGCTGGAGTCCTGCCTCCGCAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTCAGCTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCACCTGCCCGGTAGGCGCCCCCCACGCCTCCCCACCCAGCTCTTCACCTCCT--GGGGACTCGCGGCCAGCGGCCGTCGAGGGGTGTAG--------------C-AGCCGA
i nomLeu3.chr24                C 0 C 0
s macFas5.chr1                 221914510 336 + 227556264 GGCCAAGGCGCGGGCAGCCGGCGGGCGCGGGCTGGCAGGCACGCACCTCCTCGCTGTGCGCCATGCCTGGACGTGCGGCCAGCGTCTCGCCCGGGCAGCGGCCCAGCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAGGCGCGGGGCTTGCGGCCGGAGTCCTGCCTCCGCAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTTGGCTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCACCTGCCGGGTAGGCGCCCCCCACGCCTCCCCACCCAGCCGTTCACCTCCTGGGGGGACTCGCGGCCAGCGGCCGTCGAGGGGTGCAG--------------C-AGCCGT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065186 334 - 220367699 GGCCAAGGCGCGGGCAGCTGGCGGGCGCGGGCTGGCAGGCACGCACCTCCTCGCTGTGCGCCATGCCTGGACGTGCGGCCAGCGTCTCGCCCGGGCAGCGGCCCAGCTGCCGGTAGTAGTCTCCCGTGCTGGGCTGCTTGCTGAAGGCGCGGGGCTTGCGGCCGGAGTCCTGCCTCCGCAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTTGGCTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCACCTGCCGGGTAGGCGCCCCCCACGCCTCCCCACCCAGCCGTTCACCTCCT--GGGGACTCGCGGCCAGCGGCCGTCGAGGGGTGCAG--------------C-AGCCGT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125294921 334 + 130588469 ggccaaggggcgggcagccggcgggcgtgggcgggcaggcACGCACCTCCTCGCTGTGCGCCATGCCTGGACGTGCGGCCAGCGTCTCGCCCGGGCAGCGGCCCAGCTGCCGGTAGTAGTCCCCTGTGCTGGGCTGCTTGCTGAAGGCGCGGGGCTTGCGGCCGGAGTCCTGCCTCCGCAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTCGGCTGCGGGAAGACAGTGACCGGTGGGGCTCGGGCACCTGCCGGGTAGGCGCCCCCCACGCCTCCCCACCCAGCCGTTCACCTCCT--GGGGACTCGTGGCCAGCGGCCGTCGAGGGGTGCAG--------------C-AGCCGT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114997549 334 - 155834243 GGCCCGGGCGCCGGCAGCCGACGGGCGCGGGCTGGCGGGCACGCACCTCTTCGCTGTGCGCCATGCCCGGGCGTGCGGCCAGCGTCTCCCCGGGGCCGCGGCCCAGCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAGGCGCGGGGCTTGCGGCCGGAGTCCTGCCTCCGCAGCCCGTC---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTCGGCTGCGGGAAGACAGTGGCCGGTGGGCTTCGGGCACCTGCCCGGTAGGCGCCCCCCACGCCTCCCCACCCAGCTTTTCACCTCCC--AGGGACTCGCGGCCAGCGGCCTTCAAGGGGTGCGG--------------C-GGCTGC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            5922 345 -     13323 GGCCGGGTCTCGGGCGGCCGGCGAGTGCGGGCTGGCGGGCACGCACCTCCTCGCTGTGCGCCATGCCCGGGCGAGCGGCCGGCGGCTCCGCGGGGCAGCGGCCCAGCTGGCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAGGCGCGGGGCTTGCGGCCGGAGTCCTGCCTCCGCAGCCCGTT---------------------------------------------------------------------------------GTGGCCGTCGCAGGAGCTTGGCTGCGGGAAGACAGTGGCCGCTGGGCTTCGGGCACTCGCCCCTAATG---CCCCCACGACCTCCCCCCCAACTCTTCACCTCCC--CAGGGTTCGCGGCCAGTGGCCGTCTAGGGGTGCAGCCGGCCGCATCGAAC-AGCCGT
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152131005 405 + 156508116 GGCTCGGTCCCGAGCAGCCCGCGAGTGCGGGCTGGTGGACACGCACCTCCTCGCTGTGGGCCATGCCCGGGCGTGCGGCCAGCGGCTCCCCCGGGCTGCGGCCCAGCTGGCGGTAGTAGTCCCCCGTGCTGGGCTGTTTACTGAACGAGCGCTGTTTGCGGTCGGAGTCCTGCCTGCGCAGTCCGGTGCTGTGCCTGAGCAGCTCCTGCCTGTGCAGCAGCTCCGAATCCTGCCTGAGCAGCCCGGAGTCCTGCCTGTGTAGCCCCGAGTGGCCGTCGCCCGAGCTCGGCTGAGGGAAGACAGTGGCGGACGATGCTTTTG-----GCTCG---AATGCCTCTCGCGCCTCCCT-CCCGGCTCTTTGCCTG----GGGGGCTCGCGGCCAGTGGCCGTCGGGGGCCGCAG--------------CTGGCCGC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28608891 332 -  88915250 GGCTGGGTccccggcggccggcgggcgcgggcgggcAGGCACGCACCTCCTCGCTGTGCGCCATGCCGGGGCCCGCGGGCAGCGGCTCCCCGGGACAGCGGCCCAGCTGCCGGTAGTAGTCCCCCGTGCTGGGCTGCTTGCTGAAGGCGCGGGGCTTGCGGCCCGAGTCCTGCCTCCTCAGCCCGTT---------------------------------------------------------------------------------GTGGCCGTCGCGGGAGCTCAGCTGCGGGAAGACAGCGGTGCGGGGGCTTCAGCCACTGGTT--ACCGATGCCTCCCACGCCCCGCCCCCCCGGCTCGCAATTCCT--GGGG-CTCGCGGCCAGCGGCCGTCGAAGGGCGCAG--------------CCAACCGG
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e rheMac3.chr1                   9557235   0 + 229590362 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=1525490.000000
s hg38.chr1_KI270714v1_random      25977 358 +     41717 -CTTCCTAGACCC-CCTGTTCTCACGGTGGGCAGCGGGCGAGGTTCATGGGGGCCTCGGTGGAAGGGCAGGCTCCGCCCGCCTTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGTCCCCCACTGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGCCCCGACGCCAGGGGGAGCTAGAGAAGGGGCACCTCCCAGCTTAGCCTTCACTAGGCCCTCGGCCGCA-CTCCGCTCTCGGCT--GTCAGAAGGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCTGTCTTTCGGGGGTCCCGGGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGAGGCTCCGGCTTG
s panTro4.chr1_GL389124_random     25614 358 +     50403 -CTTCCTAGACCC-GCTGTTCTCACGGTGGGCAGCGGGCGAGGTTCATGGGGGCCTCGGTGGAAGGGCAGGCTCTGCCCGCCTTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGTCCCCCACTGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGCCCCGACGCCAGGGGGAGCTAGAGAAGGGGCACCTCCCAGCTTAGCCTTCACTAGGCCCTCGGCCGTA-CTCCGCTCTCGGCT--GTCAGAAGGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCTGTTTTTCGGGGGTCCCGGGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGAGGCTCCGGCTTG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224066955 357 + 229942017 -CTTCCTAGACCC-CCTGTTCTCACGGTGGGCAGCGGGCGAGGGTCATGGGGGCCTCGGTGGAAGGGCAGGCTCCACCTGCCTTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGGTCCTCACTGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGCCCCGACGCCTGGGGGAGCTGGAGAAGGGGCACCTCCCAGCTTAGCCCTCACCAGGCCCTCGGCCGCA-CTCTGCTCTCGGCT--GTCAGAATGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCTGTCTTT-GGGGGTCCCGGGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGAGGCTCCGGCTTG
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270622 356 -  28733288 -CTTCCTAGACCC-CCTGTTCTCACGGTGGGCAGCGGGCGAGGGTCATGGGGGCCTCGGTGGAAGGGCAGGCTCCGCCCGCCGTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGGCCCCCACTGAAGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGCCCCAACGCCAGGGGGAGCTGGAGAAGGGGCACCTCCCAGCTTAGCCCTCACTAGGCCCTCGGACGCA-CTCCGCTGTCGGCG--GTCAGAAGGAC-TGCGGGTCCCCAGGGCTCCACGCAGCC--ATCTTTCGGGGGTCCCGGGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGGGGCTCCGGCTTG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220032564 356 - 229590362 -CTTCCTACATCC-CCTGTTCTCAGGGCGGGCACGGGGAGAGGGTCATGGGGGTGTCGGTGGAAGGGCAGGCTCCGCCCGCCTTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGGCCCCCACTGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGCCCCGACGCCAGGGGGAGCTGGAGAAGGGGCACCTCCCGGTTTAGCCCTTACTAGGCCCTTGGCCGCA-CCCCGCTCTCGGCT--GTCAGACGGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCAGTCTTT-CGGGGTCCC-GGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGAGGCTCCGGCTTG
i rheMac3.chr1                 M 501 C 0
s macFas5.chr1                 221914846 357 + 227556264 -CTTCCTACATCC-CCTGTTCTCAGGGCGGGCACGGGGAGAGGGTCATGGGGGTGTCGGTGGAAGGGCAGGCTCCGCCCGCCTTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGGCCCCCACTGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGCCCCGACGCCAGGGGGAGCTGGAGAAGGGGCACCTCCCGGTTTAGCCCTCACTAGGCCCTTGGCCGCA-CCCCGCTGTCGGCT--GTCAGACGGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCAGTCTTT-CGGGGTCCCGGGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGAGGCTCCGGCTTG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065520 357 - 220367699 -CTTCCTACATCC-CCTGTTCTCAGGGCGGGCACGGGGAGAGGGTCATGGGGGTGTCGGTGGAAGGGCAGGCTCCGCCCGCCTTACAGGGAGGGGTTCTgggcaccggccaaggggcacaggggcccccactgaggccagaaggggcgggcccaggggcggggtggcccagccccGACGCCAGGGGGAGCTGGAGAAGGGGCACCTCCCGGTTTAGCCCTCACTAGGCCCTTGTCCGCA-CCCCGCTCTCCGCT--GTCAGACGGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCAGTCTTT-CGGGGTCCTGGGCCGGAGGGAGCCccctccagagcctgtgctctccGAGGCTCCGGCTTG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125295255 357 + 130588469 -CTTCCTACATCC-CCTGTTCTCAGGGCGGGCACGGGGAGAGGGTCATGGGGGCGTCGGTGGAAGGGCAGGCTCCGCCCGCCTTACAGGGAGGGGTTCTGGGCACCGGCCAAGGGGCACAGGGGCCCCCACTGAGGCCAGAAGGGGCGGGCCCAGGGACGGGGTGGCCCAGCCCCGACGCCAGGGGGAGCTGGAGAAGGGGCACCTCCCGGTTTAGCCCTCACTAGGCCCTTGGCCGCA-CCCCGCTCTCGGCT--GTCAGACGGAC-TGCGGGTCCCCAGGGCTCCGCGGAGCCCTGTCTTT-CGGGGTCCCGGGCCGGAGGGAGCCCCCTCCAGAGCCTGTGCTCTCCGAGGCTCCGGCTTG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114997883 335 - 155834243 -CTTCCTAGACCC-CCTGTTCTCAGGGCGGACACAGGGCGAGGGTCATGGGGGTCTCGATGGAAGGGCAGGCTCCGCCCGCCTTAAAGAGAGAGGTTCTGGGAGCCGGCCAAGGGGCACAGGGGCCCCCACAGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCTCAGCCCCGACGCCAGGGGGAGCTGGAGAAGGGGCACCTCCCAGCTTAATCCGCATTAGTGCCTTGCCCACATCCCCGCTCTCGGCT--GACAGACGGAC-TGCGGGTCT--------------------GTC----GGGAATCCCAGCTCGGCGGGAGCTCCCTACAGAGCCTGTGCCCTCCGAGGCTCCGGCTTG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            6267 332 -     13323 ---------CCCC-CCTGTTCTCAGAG-----GCGTGACGAGGGTCGT-GGGGCCTCGGTGGAAGGGCAGACTCGGC------TACAGGGAGGGGTTCTGGGCGTGGGCCAAGGGGCACAGGGGCCCCCACTGAGGCCAGAAGGGGCGGGCCCAGGGGCGGGGTGGCCCAGACCAGACGCCAGGGGGAGCCGGAGAAGGGGAACCTCCCAGCTTAGCCAGAGCCAGGGCCTCGGCTGCA-CCCGGCTCCCAGCT--GCCAGACCAAC-CGCGCGTCCCCAAGGTTCCGCCGAGTCCTGTCTCG-CGGGG-----GCCCAGAGGAAGCCCCCTCAAGAGCTCGTGCTCAATTAGACTCCCACTTG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152131410 345 + 156508116 -GTCTCTAGGCCCTCCAGTTCTCCGTGCCGG-ATGGGGCAGGGGGCGAGGAGACTTTGGCGAAAGGGCCGGCTC----------ACAGGGAGGGGTCTGGGTTA--GGTCCAAGGGCACAGGGGCCCCTACTGAGGCCAGAAGGGGCGGACCCAAGGGCGGGGTGGCCCAGCCTGGACGCCAGGGGGAGCCTGCGCTGGAACAGCTCCCA-CTTAGCCCGCCCGAAGGGCTCGGCTGCA-CCCTACTAGCTGCTCCGCCAGCCGCGC--GTGAGCGCACGGGGCGCCTAGAAGCCTTTCTGTC-GGGGGTCGCGGCCTGGAGGGGCCCCTATCTAGAGCTAGTACCCAGGGACGCTTCTGCTTG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28609223 350 -  88915250 GCTCCCGGACCCT-CTTGTTCTCAGAGCGGGGATGGGGCGAGGGTCCCGG----------GGAAGGGCGGGCTCGGTCGGCCTTTCAGGGAGGGGTTCTGGGCGCGGGCCAAGAGCCACAGGGGCCCCCACTGAGGCTAGAAGGGGCGGGACCAGGGGCGGGTTGGTCCAGCCCAGTCGCCAGGGGGAGCTGGTGAAGGGGCAGCTCGCAGTTTGGGCAGCGCTAAGGCCTCAGCCTCA-CCCAGCTCCCGGCC--ACCGGACCGTCCCGCTCCTCCCGCAGGCTCTGCCGAACCCTCTCCTTCGGGGACCCCGGCTCCCAGGGGGCCCCACTCAGGGCCCTCGTCCCGTTAGGCTTCCGCTGG
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              131531 1620 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=4909.000000
s hg38.chr1_KI270714v1_random      26335 1 +     41717 C
s panTro4.chr1_GL389124_random     25972 1 +     50403 C
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224067312 1 + 229942017 C
i ponAbe2.chr1                 C 0 C 0
s nomLeu3.chr24                 22270978 1 -  28733288 C
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220032920 1 - 229590362 T
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915203 1 + 227556264 T
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211065877 1 - 220367699 C
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125295612 1 + 130588469 C
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114998218 1 - 155834243 C
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              133151 1 +    135318 C
i tarSyr2.KE930532v1           I 1620 I 278
s micMur1.scaffold_20500            6599 1 -     13323 C
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152131755 1 + 156508116 C
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28609573 1 -  88915250 C
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=140996.000000
s hg38.chr1_KI270714v1_random      26336 54 +     41717 CCCGGA--CCCCGCTTGT-----------------------------CCGTC-TAGGGGCTGCTCCAACCTGCCACGGTGCTGGTG
s panTro4.chr1_GL389124_random     25973 54 +     50403 CCCGGA--CCCCGCTTGT-----------------------------CCGTC-TAGGGGCTGCTCCAACCTGCCACGGTGCTGGTG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224067313 51 + 229942017 CCCGGA--CTCAG-TTGC-----------------------------CCGTC-CA-GGGCTGCTCT-ACCTGCCACGGTGCTGGTG
i ponAbe2.chr1                 C 0 M 1256
s nomLeu3.chr24                 22270979 54 -  28733288 CCCGGA--TCCCGGTTGC-----------------------------CCATC-CGGGGGCTGCTCCTACCTGCCACGGTGCTGGTG
i nomLeu3.chr24                C 0 I 1
s rheMac3.chr1                 220032921 45 - 229590362 CCCGGA--CCCCGGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915204 54 + 227556264 CCCGGA--CCCCGGTTGC-----------------------------CCATC-CGGGGGCTGCTCCTACCTGCCACGGTGCTGGTG
i macFas5.chr1                 C 0 I 1
s papAnu2.chr1                 211065878 54 - 220367699 CCCGGA--CCCCGGTTGC-----------------------------CCATC-CGGGGGCTGCTCCTACCTGCCACGGTGCTGGTG
i papAnu2.chr1                 C 0 I 1
s chlSab2.chr20                125295613 54 + 130588469 CCCGGA--CCCCGGTTGC-----------------------------CCATC-CGGGGGCTGCTCCTACCTGCCACGGTGCTGGTG
i chlSab2.chr20                C 0 I 1
s calJac3.chr7                 114998219 53 - 155834243 CCCGGA--CCCCAGGTGC-----------------------------CCGTC--GGGGGCTGCTCCTACCTGCCACGGTGCTGGTG
i calJac3.chr7                 C 0 I 1
s micMur1.scaffold_20500            6600 55 -     13323 -CCAGAGCCCCTAGCCTC-----------------------------CAGGC-CCAGGGCTGCTCCTACCTGCGACTGTGCAGATG
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152131757 48 + 156508116 CACGGG--GCCC-----------------------------------ACAGC-CTGGGGCTGCTCCTACCTGCGACTGTTCCGGTG
i mm10.chr4                    I 1 I 1
s canFam3.chr5                  28609574 55 -  88915250 CCAGGG--CTCTCGCCAC-----------------------------CCGTCCCCGGGGCTGCTCCTACCTGCGCCAGTGCCGGTG
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              133152 278 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I

a score=356268.000000
s hg38.chr1_KI270714v1_random      26390 103 +     41717 -GTCCTGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCA-GGACCCGACACCTGCTTTACGTGATACTTCCTCTCAGGTTACA---------G------------AC--------GCCCGCGCACGGCCA-----GCCTATGGGC
s panTro4.chr1_GL389124_random     26027 103 +     50403 -GTCCTGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCA-GGACCCGACACCTGCTTTACCTGATACTTCCTCTCAGGTTACA---------G------------AC--------GCCCGCGCACGGCCA-----GCCTATGGGC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22271034 103 -  28733288 -CCCCCGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCA-GGATCCGACACCTGCGTTACCTGATACTTCCTCTCAGGTTACA---------G------------CC--------GCCCGCGCACGGCCA-----ACCTATGGGC
i nomLeu3.chr24                I 1 M 1236
s rheMac3.chr1                 220032966 111 - 229590362 ----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------ACACCTGCATTACCTGATACTTCCTCTCAGGTTACA---------G------------CC--------GCCCGCACACGGCCA-----GCCTATGGGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915259 103 + 227556264 -CCCCCGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCA-GGACCCGACACCTGCGTTACCTGATACTTCCTCTCAGGTTACA---------G------------CC--------GCCCGCACACGGCCA-----GCCTATGGGC
i macFas5.chr1                 I 1 C 0
s papAnu2.chr1                 211065933 103 - 220367699 -CCCCCGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCA-GGACCCGACACCTGCGTTACCTGATACTTCCTCTCAGGTTACA---------G------------CC--------GCCCGCACACGGCCA-----GCCTATGGGC
i papAnu2.chr1                 I 1 C 0
s chlSab2.chr20                125295668 103 + 130588469 -CCCCCGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCA-GGACCCGACACCTGCGTTACCTGATACTTCCTCTCAGGTTACA---------G------------CC--------GCCCGCACACGGCCA-----GCCTATGGGC
i chlSab2.chr20                I 1 C 0
s calJac3.chr7                 114998273 112 - 155834243 -CCCCCGCTG-----------------------------------------------TGCACCTGGCGGTGGGGGAGGCA-GGACCGGACACCTGCGTTACCTGATCCTTCCGCTCAGGTTACAGAggcccgcg------------cc--------gcccgcgcacggccc-----gccTACGGGC
i calJac3.chr7                 I 1 C 0
s micMur1.scaffold_20500            6656 115 -     13323 -CCCCCGCTG-----------------------------------------------TGCACCTGCTGGC-GGGGCGGCACAGACCCGACACCTGCGTTACCTGATCCTTCCTCTCAGGTTACA---------gcccggcccgcgccc--------gcccgcgcgtggcgg-----gccTATGGGC
i micMur1.scaffold_20500       I 1 C 0
s mm10.chr4                    152131806 106 + 156508116 -CCCCCGCTG-----------------------------------------------TGCACCTGGCGGCGGGGGCGGCACGGACCCGACACCTGCGTTACCTGATCCTTCCTCTCAGGTTACA---------G------------CCCG------GCCCGCACGCTGCCC-----GCCTATGAGC
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28609629 118 -  88915250 GCCCCCGCTG-----------------------------------------------TGCACCTGGTGGCGGGGGCGGCCTGGACCCAACACCTGCGCTACTCGATCCTTCCTCTCAGGTTACA---------G------------CCCAGCCCTTGCCCGCCCGCGCCTAAGAGCGCCTATGAGC
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              133152 278 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=319054.000000
s hg38.chr1_KI270714v1_random      26493 121 +     41717 TCCGACGGCCTGACATCACCCGGGGCCCGCCAATCCCAGGCCGAA-----CCCCCCCCAGCCGTCGCGGATGCCACGGGGGCGCCAACTAC--TCTGCCA-CACCT-GGCCGCGGCTCTGCACCCGCCCC--
s panTro4.chr1_GL389124_random     26130 126 +     50403 TCCGACGGCCTGACATCACCCGGGGCCCGCCAATCCCAGGCCGAACCCCCCCCCCCCCAGCCGTCGCGGATGCCACGGGGGCGCCAACTAC--TCTGCCA-CACCT-GGCCGCGGCTCTGCACTCGCCCC--
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                 220033077 119 - 229590362 TCCGACGGCCTGACATCACCCGGGGCCCGCCAATCCCAGGCCGAA-------CCCCCCAGCCGTGGCGGATACCACGGGGGTGCCAACTAC--CTTGCCA-CACCT-GGCCGCAGCTCTGCACCCGCCCC--
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915362 119 + 227556264 TCCGACGGCCTGACATCACCCGGGGCCCGCCAATCCCAGGCCGAA-------CCCCCCAGCCGTCGCGGATACCACGGGGGTGCCAACTAC--CTTGCCA-CACCT-GGCCGCAGCTCTGCACCCGCCCC--
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066036 119 - 220367699 TCCGACGGCCTGACATCACCCGGGGCCCGCCAATCCCAGGCCGAA-------CCCCCCAGCCGTCGCGGATACCACGGGGGCGCCAACTAC--CTTGCCA-CACCT-GGCCGCAGCTCTGCACCCGCCCC--
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125295771 119 + 130588469 TCCGACGGCCTGACATCACCCGGGGCCCGCCAATCCCAGGCCGAA-------CCCCCCAGCCGTCGCGGATACCACGGGGGCGCCAACTAC--CTTGCCA-CACCT-GGCCGCAGCTCTGCACCCGCCCC--
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114998385 118 - 155834243 TCCGAAGGCCTGACATCACCTGGGGCCCGCCAATCCTAGGCCGAA-------CCCCTCGGCCGTCGCGGATGCTAC-CGGGCGCCAACTAC--TCTGCCA-CACCT-GGCCGCCTCTCCGCGCCCGCCCC--
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            6771  99 -     13323 TCAGTCGGCCTGACATCACCTGGGGCCCGCCAATCCCAGGCCGAA-----ATCCTTCCAGCAGTCGGGGA-------------------------TGCCA-CACCTGGGCCACTGCGCCGCGCCTGCCCC--
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152131912 112 + 156508116 TCAGTCGGCCTGACATCACCCAGGGTCCGCCAATCCCAGGCTTAA-------CCCCCAAGCAGGCACGGATGTCACGGAG--CCCCACGAC--TCTGCCACCAGCC-AGGGGCGACTCCGCCCC--------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28609747 125 -  88915250 TCTGCCGGCCTGACATCACCCGAGGCCCGCCAATCCCGGGTTGAC-----CCACTCGCACCCATAGGGGACGCCACGGGGGCTCCAAGTGCATCATGCCA-CAGCC-TGCCGCTGCGCCTTACCTGTCCAGC
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              133152 278 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22271137 1236 -  28733288 M
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=-1150.000000
s hg38.chr1_KI270714v1_random      26614 1 +     41717 G
s panTro4.chr1_GL389124_random     26256 1 +     50403 C
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                 220033196 1 - 229590362 A
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915481 1 + 227556264 A
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066155 1 - 220367699 A
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125295890 1 + 130588469 A
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114998503 1 - 155834243 C
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              133430 1 +    135318 G
i tarSyr2.KE930532v1           I 278 I 1162
s micMur1.scaffold_20500            6870 1 -     13323 A
i micMur1.scaffold_20500       C 0 I 2
s mm10.chr4                    152132024 1 + 156508116 G
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28609872 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22271137 1236 -  28733288 M
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=526208.000000
s hg38.chr1_KI270714v1_random      26615 229 +     41717 GGCCAGATGTGACCCCGCCCCC--TGCGCCTCTCCCTAAGCTGGGAGCTGAGC--CC--CCACCTTCATCC-----------------------------CCGCCCGAGAGGAGA-GAGGG-----CTGACCGTGGGCAGAGGGGGCCTCTCATATTTGG--------CTGCCGGCTCC-GGGTCGCG----------TCCCCACCGTTTCCCTCCTGCATCTGGAAACCATCGCCATCCACGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGATTTCAGGGGCCG
s panTro4.chr1_GL389124_random     26257 229 +     50403 GGCCGGATGTGACCCCGCCCCC--TGCGCCTCTCCCTAAGCTGGGAGCTGAGC--CC--CCACCTTCATCC-----------------------------CCGCCCGAAAGGAGA-GAGGG-----CTGACCGTGGGCAGAGGGGGCCTCTCATATTTGG--------CTGCCGGCTCC-GGGTCGCG----------TCCCCACCGTTTCCCTCCTGCATCTGGAAACCATCGCCATCCACGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGATTTCAGGGGCCG
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                 220033197 200 - 229590362 GGCCAGATGTGACCCCGCCCCC--TGCGCCTCTCCCTAAGCTGGGAGCTGAGC--CC--CCACCTTC--------------------------------------------------------------ATCCTGGGCAGAGGGGGCCTCTCATATTTGG--------CCCCCGGCTCC-GGGTCGCG----------TCCCCCTGCTTCCCCTCCTGCATCTGGAAACCATCCCCATC--CGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGGTTTCAGGGGCCG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915482 200 + 227556264 GGCCAGATGTGACCCCGCCCCC--TGCGCCTCTCCCTAAGCTGGGAGCTGAGC--CC--CCACCTTC--------------------------------------------------------------ATCCTGGGCAGAGGGGGCCTCTCATATTTGG--------CCCCCGGCTCC-GGGTCGCG----------TCCCCCTGCTTCCCCTCCTGCATCTGGAAACCATCCCCATC--CGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGGTTTCAGGGGCCG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066156 227 - 220367699 GGCCAGATGTGACCCCGCCCCC--TGCGCCTCTCCCTAAGCTGGGAGCTGAGC--CC--CCACCTTCATCC-----------------------------CCGCCGGAGACGGGA-GAGGG-----CTGATCCTGAGCAGAGGGGGCCTCTCATATTTGG--------CCCCCGGCTCC-GGGTCGCG----------TCCCCCTGCTTCCCCTCCTGCATCTGGAAACCATCCCCATC--CGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGGTTTCAGGGGCCG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125295891 227 + 130588469 GGCCAGATGTGACCCCGCCCCC--TGCGCCTCTCCCTAAGCTGGGAGCTGAGT--CC--CCACCTTCATCC-----------------------------CCGCCGGAGACGGGA-GAGGG-----CTGATCCTGGGCAGAGGGGGCCTCTCATATTTGG--------CCCCCGGCTCC-GGGTCGCG----------TCCCCCTGCTTCCCCTCCTGCATCTGGAAACCATCCCCATC--CGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGGTTTCAGGGGCCG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114998504 208 - 155834243 GCCCAGATGTGGCCCCGCCCCC--TGCGCCTCTCCCTAAACTGGGAGCTAAGT--CC--CCACCTTCATCC-----------------------------CTGCCCGAGACAGGA-GAGGG-----CTGACTGTGGGCAGAGGG-----------------------------GGCTCC-GGGTCGCG----------TCCCCACCCTTCCCCTCCTGCATCTGGAAACCATCGCCATCCACGAAAGCGACACCGACACCCGCGCTCAAGCCTCGGGTTTCAGGGGCCG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            6873 241 -     13323 CGCCAGATGTGGCTCCGCCCCC--TGCTCCTGTCCCTAAACTAGGTGCTGCGC--ACCGCGACCTTCATCC-------CTGTACGCA-------------CCGCCGGAAACCAGACGAGAG-----CCTACAATGGGCAGTGGA-GCCTCTCATCTTTGG-------CCCCCCGGTTCC-GGGTCGCG----------CCCCTGCCCTTCCCCTCCCGCATCTGGAAACCATCGCCATCCGCGAAAGCGACACCAACACCCGCACCCAAGCCTCGAGTTTCAGGGGCGG
i micMur1.scaffold_20500       I 2 C 0
s mm10.chr4                    152132025 230 + 156508116 -------------TGCACTCCT--TTTGCCTCTC----------GTCCTGAGTA-CC--CTATCTTCATCCTCC----CCGCCCTCAGTC--------ATTTGCCCGGATAGCAA-GAGGG----CCTGACCTCGGATAGTGAA-ACTCTTCGTTTTTGTCCACCCACCCCTCCATTCC-AGGTCGCG-----------CCCTGGCCTTTCCCTCCCGCATCTGGAACCCATCGCTAACCATGTAAACGACACCG-CACCCGGGCCCAGGCCTCAAGTTTCAAGTGTGG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28609873 281 -  88915250 AACCAGATGTGGATACGCCCCCAGTGCCCCTCTCCCTCCGCTAGGCGCTGGGCATCC--TGGCCTTCAGCCCCCTCTGCCTCCCTCAAACTGGCCCCTCCACACCGGGGTGGACA-GAAAGCGGGCCCGACCACAAGCAGTGGA-GCCCCCCGTATTTGG----TACCCCCTGGGTTCCGGGGTCATGCCCCCGCCCTTCCCCTCCCTTCCCCTCCCGCATCTGGAAACCATCGACATCCGCGTAAGTGACACCGACACCCGCGCCTAAGCCTCAGGTTTCAGGGGCGG
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22271137 1236 -  28733288 M
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=1399276.000000
s hg38.chr1_KI270714v1_random      26844 393 +     41717 TAAGGCGGGGTCGGGTGACAGCGCGGCTTCCCGCCCCGTCGCAGCTGC--------------CCCCAACTAGGCCCAGCTCAGTGAGGGAGA-G-TGAGGC-GGCCGGGCCAAAGACTGAGTGACCGGGT-GGGGGCTGTCCCCTGCCCCACTCTCCAGCCCATGCGTCCCTGCGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTCGTTTTCTGGGCCAGCCCGCCGGCTCCGCGCCCCCTGCAG-CC-CGGAGGCTCCGACGCCACGACCCTGCTCCCACCTGCGG-TCAGGCACCCGCGCGGG--------------------------------------------AGGCGCCGCGGC---------GACACAAAGAGCCCTTTGTAGAGCTTCCCGGCCCGGGCCCTGGCGTCTGCGGCCCAGCACG
s panTro4.chr1_GL389124_random     26486 393 +     50403 TAAGGCGGGGTCGGGTGACAGCGCGGCTTCCCGCCCCGTCGCAGCTGC--------------CCCCAACTAGGCCCAGCTCAGTGAGGGAGA-G-TGAGGC-GGCCGGGCCAAAGACTGAGTGACCGGGT-GGGGGCTGTCCCCTGCCCCACTCTCCAGCCCATGCGTCCCTGCGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTCGTTTTCTGGGCCAGCCCGCCGGCTCCGCGCCCCCTGCAG-CC-CGGAGGCTCCGACGCCACGACCCTGCTCCCACCTGCGG-TCAGGCACCCGCGCGGG--------------------------------------------AGGCGCCGCGGC---------GACACAAAGAGCCCTTTGTAGAGCTTCCCGGCCCGGGCCCTGGCGTCTGCGGCCCAGCACG
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272373 388 -  28733288 TAAGGCGGGGTCGGGTGACAGCGCGGCTTCCCG-CCCGTCGAAGCTGC--------------CCCCCACTAGGCCTAGCTC----AGGGAGA-G-TGAGGC-GGCCGGGCCAAAGACTGAGTGACCGGGT-GGGGGCTGTCCCCTGCCCCACTCTCCAGCCCATGCGTCCCTGCGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTTGTTTTCTGGGCCAGCCCGCCCGCTCCGCGCCCCCTGCAG-CC-CGGAGGCTCGGACGCCACGACCCTGCTCCCGCCCGCGG-TCAGGCACCCGTGCGGG--------------------------------------------GGGCGCCGCGGC---------GACACAAAGAGCTCTTTGTGGAGCGTCCCGGCCCCGGCCCTGGCGCCTGCGGCCCAGCACG
i nomLeu3.chr24                M 1236 C 0
s rheMac3.chr1                 220033397 393 - 229590362 TAAGGCGGGGTCGGGTGACAGCGTGGCTTCCCGCCCCGTCGCAGCTGC--------------CCCCAAATAGGCCCAGCTCAGTGAGGGAGA-G-TGAGGC-GGCCCGGCCAAACGCTGAGTGACGGAGT-GGGGGCTGTCCCCTGCCCCACTCTCCAGCCCCTGCGTCCCTGAGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTTGTTTTCTGGGCCAGCCCGCCCGCTCCGCGCCCCCTGCAG-CC-CAGAGGCTCGGACGCCACGACCCTGCTCCCGCCCTCGG-TCAGGCAcccgcgcggg--------------------------------------------gggcgccgcggc---------cACACAAAGAGCCCTTTGTGGAGTGTCCGGGTCCCGGCCCTGGAGCCTGCGGCCCAGCACG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221915682 393 + 227556264 TAAGGCGGGGTCGGGTGACAGCGTGGCTTCCCGCCCCGTCGCAGCTGC--------------CCCCAAATAGGCCCAGCTCAGTGAGGGAGA-G-TGAGGC-GGCCCGGCCAAACGCTGAGTGACGGAGT-GGGGGCTGTCCCCTGCCCCACTCTCCAGCCCCTGCGTCCCTGAGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTTGTTTTCTGGGCCAGCCCGCCCGCTCCGCGCCCCCTGCAG-CC-CAGAGGCTCGGACGCCACGACCCTGCTCCCGCCCTCGG-TCAGGCACCCGCGCGGG--------------------------------------------GGGCGCCGCGGC---------CACACAAAGAGCCCTTTGTGGAGTGTCCGGGTCCCGGCCCTGGAGCCTGCGGCCCAGCACG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066383 393 - 220367699 TAAGGCGGGGTCGGGTGACAGCGTGGCTTCCCGCCCCGTCGCAGCTGC--------------CCCCAAATAGGCCCAGCTCAGTGAGGGAGA-G-TGAGGC-GGCCCGGCCAAAGACTGAGTGACGGAGT-GGGGGCTGTCCCCTTCCCCACTCTCCAGCCCCTGCGTCCCTGAGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTTGTTTTCTGGGCCAGCCCGCCCGCTCCGCGCCCCCTGCAG-CC-CAGAGGCTCGGACGCCACGACCCTGCTCCCGCCCTCGG-TCAGGCACCCGCGCGGG--------------------------------------------GGGCGCCGCGGC---------CACACAAAGAGCCCTTTGTGGAGTGTCCGGGTCCCGGCCCTGGCGCCTGCGGCCCAGCACG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296118 393 + 130588469 TAAGGCGGGGTCGGGTGACAGCACGGCTTCCCGCCCCGTCGCAGCTGC--------------CCCCAAATAGGCCCAGATCAGTGAGGGAGA-G-TGAGGC-GGCCCGGCCAAAGACTGAGTGACGGGGT-GGGGGCTGTCCCCTGCCCCACTCTCCAGCCCATGCGTCCCTAAGGTGGCCTCAGACCCTT--CACCCCGCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTTGTTTTCTGGGCCAGCCCGCCCGCTCCGCGCCCCCTGCAG-CC-CGGAGGCTCGGACGCCACGACCCTGCTCCCGCCCTCGG-TCAGGCACCCGCGCGGG--------------------------------------------GGGCGCCGCGGC---------CACACAAAGAGCCCTTTGTGGAGTGTCCGGGTCCCGGCCCTGGCGCCTGCGGCCCAGCACG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114998712 387 - 155834243 CAAGACGGGGTCGGGTGACAGCGAGGCTTCCCGCCCTGTCGCAGCTGC--------------CTCCCACTAGGCCCAGTTC----AGCGAGA-G-CGAGGC-GGCCTGGCCCAAGACGGAGTGACCTGGT-GGGGGCTGTCCCCTGCTCCACCCTCCAGCCCGTGCGTCCCGGCGGTGGCCTCAGACCCTC--CACCCCTCCCGACCTGGCTCACGTTGCAGGAAACGCGACACCGC-GGGTTTGTTTTCTGGGCCAGACCGCCCGCTCCGCGCCCCCTGCAG-CC-CGGAGGCTCGGACGCCACGGCCCTGCTCCCGCCCGCGG-TCAGGCACCCGCGCTGG--------------------------------------------GGGCGCCGTGGT---------CACACAAAGAGCCCTTTGTGGAGCAT-CGGGGCCCGGCCCTGGTGCCTGCGGCCCAGCACG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7114 381 -     13323 CCAGTCGGGGTCGGGTGACAGCGCAGCGTCCCGCCCCGTCGAGGCTGC--------------CCCCTGCTGGGCCCGGCGCGGGGAGAGGGACG-TGAGGC-GGCCGGGCCAAAGGCC-AGTGACCG-GT-GGGGGCTGGCCGGTGCCCCAGCCTCCAGTCCGCGCGTCCCCGCGGTGGCCTCGGACCCTCCGCGCCCCGCCTAAGCAGGCTCACGTTGCAGGAAACGCGACACCGCAGGATTTGTTTTCTGGGCCAGCCCGCCCCCTCGGCGCCCCCTGCAGCCC-CGGAGGCTCGGACGCGGCGACCCTGCTTCTGCC--CGG-TCAGGCACCCGCGCTGG--------------------------------------------GGGCCCAGCGGG---------CACACAAAAGGCTCTTTGTGGA---TCCG---------CCGGGCGCCTGCGGATTGGCACG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132255 385 + 156508116 CCGGGTGGGCTCGGGTGACAAAACCACTTCTCGCTCCGT------TGC--------------TCCCCGCTAAGGCCTGCACTGGGAGAGGGA-GAAGAGGT-GGTGTGGCCAAAGACCAAATGACCAGGT-GGGGGCTGTCCCTTACCCTGACCCAC-GCTCCTGCGTCTCTACTGTGGCCTCAGACCCCC--GTCCCCACTGGTCAAGGTTCACGTGACAGGAAACACGACA-CGCCAGATTTGTTTTCTGGGTCAGCCAGCCCCTTCGGCACCCACTAGAG-CCGTAGAGGTGTACACCCCTCAACCCAGTTCTAACGGACAGTTTAGTCACCCATGCCTG--------------------------------------------AGGGGGCAAGGGATGCAACTACACACAAAGGGCCCTTTGTGGAGCCT------------ATTAGCGCCTGCACTTCTGCATG
i mm10.chr4                    C 0 I 2
s canFam3.chr5                  28610154 441 -  88915250 CCAGGCGGGCTCGGATGACAGCGCGGTGGCCCGCCCCGTCGCAGCTgcccgccccccccccgcccccgcTAAGCCCAGCCCAGGGAACAGGACA-TGGGGCTTGCAGGGCCAAAGGCCAAGCCACCGTTCGGGGGGCTGCCCCCTGTTCCACCCCCC-GCCCCTGCGTCCCTGCAGCGGCCCCGAACCTCC-AGGCCCCACCCGAATGGGCTCTCGTTGCAGGAAACCCGACACCACAGGATTTGTTTTCTGGGACAGTCCGCCCCCTCGGCGCCCCCTGCAG-CC-CCGAGGCGCGGATGCCACGACCCTGCTCCCGAG-GCGG-TCAGGCAACTGCggggggggggggggggtggaacgaggaggggggcagaggcaggggCCGCGGGCACAATGGG---------CACACAAAGGGCCCTTTGTGAAGCTG------------CCCAATGCCTGCGGCCCTGCACG
i canFam3.chr5                 C 0 C 0
e panPan1.JH650164                 17423 2945 +     42585 I
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=34578.000000
s hg38.chr1_KI270714v1_random      27237 10 +     41717 --CACACAGCCG
s panTro4.chr1_GL389124_random     26879 10 +     50403 --CACACAGCCG
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650164                 20368 10 +     42585 --cacacagccg
i panPan1.JH650164             I 2945 C 0
s nomLeu3.chr24                 22272761 10 -  28733288 --CACACAGCCG
i nomLeu3.chr24                C 0 I 3
s rheMac3.chr1                 220033790 10 - 229590362 --CACACAGCCG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916075 10 + 227556264 --CACACAGCCG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066776 10 - 220367699 --CACACAGCCG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296511 10 + 130588469 --CACACAGCCG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999099 10 - 155834243 --CACACAGCCA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7495 10 -     13323 --CACACACTGG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132642  8 + 156508116 --CACACCAC--
i mm10.chr4                    I 2 C 0
s canFam3.chr5                  28610595 10 -  88915250 CACGCACGGG--
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=23353.000000
s hg38.chr1_KI270714v1_random      27247 11 +     41717 GGAGGGACA--CA
s panTro4.chr1_GL389124_random     26889  7 +     50403 GGAGGGA------
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650164                 20378 11 +     42585 ggagggacg--ca
i panPan1.JH650164             C 0 C 0
s rheMac3.chr1                 220033800 11 - 229590362 GGAGGGACG--CA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916085 11 + 227556264 GGAGGGACG--CA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066786 11 - 220367699 GGAGGGGCG--CA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296521 13 + 130588469 GGAGTGGCGCACA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999109 11 - 155834243 GGAGGGACG--CA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7505 10 -     13323 GGAGGGGCG--C-
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132650 11 + 156508116 AGAGGGGCA--TA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28610605 11 -  88915250 GTAGGGGCA--CG
i canFam3.chr5                 C 0 I 7
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22272771  3 -  28733288 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=5046.000000
s hg38.chr1_KI270714v1_random      27258 11 +     41717 CACAGCC----------GGGA------------------------------------------
s panPan1.JH650164                 20389 11 +     42585 cacagcc----------ggga------------------------------------------
i panPan1.JH650164             C 0 C 0
s rheMac3.chr1                 220033811 11 - 229590362 CACAGCC----------GGGA------------------------------------------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916096 11 + 227556264 CACAGCC----------GGGA------------------------------------------
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066797 11 - 220367699 CACAGCC----------GGGA------------------------------------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296534 11 + 130588469 CACAGCC----------GGGA------------------------------------------
i chlSab2.chr20                C 0 I 1
s mm10.chr4                    152132661  4 + 156508116 -----------------GGGA------------------------------------------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28610623 63 -  88915250 GACATCCTGGTGCTCAGGGGAGTGGAGGCAACTGTCTGGGCCACCTGTCCTGTCGCTTTGGGC
i canFam3.chr5                 I 7 C 0
e micMur1.scaffold_20500            7515  0 -     13323 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120  0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e nomLeu3.chr24                 22272771  3 -  28733288 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M
e panTro4.chr1_GL389124_random     26896  0 +     50403 C

a score=33845.000000
s hg38.chr1_KI270714v1_random      27269 35 +     41717 GGGGCACACACAGCCG---GGAGGGA--------CGCACACAGCCG-----------------------------------------
s panPan1.JH650164                 20400 35 +     42585 gggacgcacacagccg---ggagggg--------cacacacagccg-----------------------------------------
i panPan1.JH650164             C 0 C 0
s nomLeu3.chr24                 22272774 35 -  28733288 GGGGCGCACACAGCCG---GGAGGGA--------CGCACACAGCCG-----------------------------------------
i nomLeu3.chr24                I 3 T 38
s rheMac3.chr1                 220033822 33 - 229590362 GGGGCGCACC-AGCCG---GGAGGG---------GGCTCACAGCCG-----------------------------------------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916107 33 + 227556264 GGGGCGCACC-AGCCG---GGAGGG---------GGCTCACAGCCG-----------------------------------------
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066808 35 - 220367699 GGGGCGCACTGAGCCG---GGAGGGA--------GGCACACACCCG-----------------------------------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296546 33 + 130588469 GGGGCTCAC--AGCCG---GGAGGGG--------CGCACACAGCCG-----------------------------------------
i chlSab2.chr20                I 1 C 0
s canFam3.chr5                  28610686 87 -  88915250 AGGGCTCACACAGCTGCCCTGAGGGAAAGTTGGTGACCTGTGGCCCTCTCTGGTCCTCTCCTGGGCCCTCTCCACCTCAGAGAGATG
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665  0 + 156508116 C
e micMur1.scaffold_20500            7515  0 -     13323 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120  0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M
e panTro4.chr1_GL389124_random     26896  0 +     50403 C

a score=8502.000000
s hg38.chr1_KI270714v1_random      27304  9 +     41717 GGAGGG--GCA
s panTro4.chr1_GL389124_random     26896  2 +     50403 ---------CG
i panTro4.chr1_GL389124_random C 0 C 0
s panPan1.JH650164                 20435  9 +     42585 ggaggg--gca
i panPan1.JH650164             C 0 N 0
s nomLeu3.chr24                 22272771  9 -  28733288 GGAGGG--GCG
i nomLeu3.chr24                T 38 C 0
s rheMac3.chr1                 220033855  9 - 229590362 GGAGGG--GCA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916140  9 + 227556264 GGAAAG--GCA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066843  9 - 220367699 GGACGG--GCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296579 11 + 130588469 GGAGGGGCGCA
i chlSab2.chr20                C 0 C 0
s canFam3.chr5                  28610773  9 -  88915250 AAAGGG--GAA
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665  0 + 156508116 C
e micMur1.scaffold_20500            7515  0 -     13323 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120  0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=18445.000000
s hg38.chr1_KI270714v1_random      27313 16 +     41717 --------------------------------------------CACACAGCCGGGA----GGG--------
s panTro4.chr1_GL389124_random     26898 16 +     50403 --------------------------------------------CACACAGCCGGGA----GGG--------
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272780 16 -  28733288 --------------------------------------------CACACAGCCGGGA----GGG--------
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033864 16 - 229590362 --------------------------------------------CACACAGCCGGGA----GGG--------
i rheMac3.chr1                 C 0 I 19
s macFas5.chr1                 221916149 16 + 227556264 --------------------------------------------CACACAGCCGGGA----GGG--------
i macFas5.chr1                 C 0 I 19
s papAnu2.chr1                 211066852 16 - 220367699 --------------------------------------------CACACAGCCAGCA----GGG--------
i papAnu2.chr1                 C 0 T 38
s chlSab2.chr20                125296590 16 + 130588469 --------------------------------------------CACACAGCCGGGA----GGG--------
i chlSab2.chr20                C 0 C 0
s canFam3.chr5                  28610782 72 -  88915250 CCCGACTGACAGCTTNNNNNNNNNNCCCGTGCCCCTACCCCGTGCCAGCGGCCGGGGCCGCGGGCACAATGG
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665  0 + 156508116 C
e micMur1.scaffold_20500            7515  0 -     13323 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120  0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=8119.000000
s hg38.chr1_KI270714v1_random      27329 20 +     41717 ACGCACACAGCCGG--------GAGGG-G-
s panTro4.chr1_GL389124_random     26914 20 +     50403 ACGCACACAGCCGG--------GAGGG-G-
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272796 20 -  28733288 ACGCACACAGCCGG--------GAGGG-G-
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033899 19 - 229590362 AGGCACACACCCGG--------GACGG---
i rheMac3.chr1                 I 19 C 0
s macFas5.chr1                 221916184 19 + 227556264 AGGCACACACCCGG--------GACGG---
i macFas5.chr1                 I 19 C 0
s papAnu2.chr1                 211066830 19 - 220367699 AGGCACACACCCGG--------GACGG---
i papAnu2.chr1                 T 38 C 0
s chlSab2.chr20                125296606 19 + 130588469 -GGCTCACAGCCGG--------GAGGGG--
i chlSab2.chr20                C 0 I 228
s micMur1.scaffold_20500            7515  3 -     13323 ------------GG--------G-------
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28610854 26 -  88915250 --GCACACAAAGGGCCCTTTGTGAAGC--T
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665  0 + 156508116 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120  0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=1225.000000
s hg38.chr1_KI270714v1_random      27349 1 +     41717 G
s panTro4.chr1_GL389124_random     26934 1 +     50403 G
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272816 1 -  28733288 C
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033918 1 - 229590362 G
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916203 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066849 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s micMur1.scaffold_20500            7518 1 -     13323 G
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28610880 1 -  88915250 G
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665 0 + 156508116 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120 0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e chlSab2.chr20                125296625 228 + 130588469 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=26291.000000
s hg38.chr1_KI270714v1_random      27350 17 +     41717 -----------------CTCGCACAGCCAGGAGG
s panTro4.chr1_GL389124_random     26935 17 +     50403 -----------------CTCGCACAGCCAGGAGG
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272817 17 -  28733288 -----------------CTCACACAGCCAGGAGA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033919 17 - 229590362 -----------------CTCACACGGCCAGGAGG
i rheMac3.chr1                 C 0 I 1
s macFas5.chr1                 221916204 17 + 227556264 -----------------CTCACACAGCCAGGAGG
i macFas5.chr1                 C 0 I 1
s papAnu2.chr1                 211066850 17 - 220367699 -----------------CTCACACAGCCAGCAGG
i papAnu2.chr1                 C 0 I 1
s chlSab2.chr20                125296853 17 + 130588469 -----------------CTCACACAGCCAGGAGG
i chlSab2.chr20                I 228 I 1
s micMur1.scaffold_20500            7519 10 -     13323 -----------------ATCGCGCAGT-------
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28610881 34 -  88915250 CCCAATGCCTGCGGCCCTGCACGCACGCACGGGG
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665  0 + 156508116 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120  0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=-69.000000
s hg38.chr1_KI270714v1_random      27367 1 +     41717 T
s panTro4.chr1_GL389124_random     26952 1 +     50403 T
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272834 1 -  28733288 G
i nomLeu3.chr24                C 0 C 0
s canFam3.chr5                  28610915 1 -  88915250 T
i canFam3.chr5                 C 0 I 10
e mm10.chr4                    152132665 0 + 156508116 C
e micMur1.scaffold_20500            7529 0 -     13323 C
e rheMac3.chr1                 220033936 1 - 229590362 I
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120 0 - 155834243 C
e macFas5.chr1                 221916221 1 + 227556264 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e chlSab2.chr20                125296870 1 + 130588469 I
e papAnu2.chr1                 211066867 1 - 220367699 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=10286.000000
s hg38.chr1_KI270714v1_random      27368 5 +     41717 GACCT
s panTro4.chr1_GL389124_random     26953 5 +     50403 GACCT
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272835 5 -  28733288 GACCA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033937 5 - 229590362 GACCA
i rheMac3.chr1                 I 1 C 0
s macFas5.chr1                 221916222 5 + 227556264 GACCA
i macFas5.chr1                 I 1 C 0
s papAnu2.chr1                 211066868 5 - 220367699 GACCA
i papAnu2.chr1                 I 1 C 0
s chlSab2.chr20                125296871 5 + 130588469 GACCA
i chlSab2.chr20                I 1 C 0
s canFam3.chr5                  28610926 5 -  88915250 GACCT
i canFam3.chr5                 I 10 C 0
e mm10.chr4                    152132665 0 + 156508116 C
e micMur1.scaffold_20500            7529 0 -     13323 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e calJac3.chr7                 114999120 0 - 155834243 C
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=6703.000000
s hg38.chr1_KI270714v1_random      27373 3 +     41717 CAC
s panTro4.chr1_GL389124_random     26958 3 +     50403 CAC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272840 3 -  28733288 CGC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033942 3 - 229590362 CGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916227 3 + 227556264 CGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066873 3 - 220367699 CGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296876 3 + 130588469 CGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999120 3 - 155834243 CAC
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28610931 3 -  88915250 CGA
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152132665 0 + 156508116 C
e micMur1.scaffold_20500            7529 0 -     13323 C
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=319713.000000
s hg38.chr1_KI270714v1_random      27376 92 +     41717 AGACCTGGCACTTGGGCTCAGCGGTGGAGAGGGGGCA-CTGGCTGGGCCACCTGTCCTGTGGATTTGGGCGGGGCCCACA-GTCTGCGCCGGGA
s panTro4.chr1_GL389124_random     26961 92 +     50403 AGACCTGGCACTTGGGCTCAGCGGTGGAGAGGGGGCA-CTGGCTGGGCCACCTGTCCTGTGGATTTGGGCGGGGCCCACA-GTCTGCGCCGGGA
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272843 92 -  28733288 AGACCTGACACTTGGGCTCAGCGGTGGAGAGGGGGCA-CTGGCTGGGCCACCTGTCCTGTGGATTTGGGCAGGGCCCCCA-GTCTGCGCTGGGA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220033945 92 - 229590362 AGACCTGGCACTTGGGCTCACCGGTGGAGAGGGGACA-CTGGCTGGGCCACCTGTCCTGTGGCTTTGGGCGGGGCCCACA-GGCTGGGCTGGGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916230 92 + 227556264 AGACCTGGCACTTGGGCTCACCGGTGGAGAGGGGACA-CTGGCTGGGCCACCTGTCCTGTGGCTTTGGGCGGGGCCCACA-GGCTGGGCTAGGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066876 92 - 220367699 AGACCTGGCACTTGGGCTCACCGGTGGAGAGGGGACA-CTGGCTGGGCCACCTGTCCTGTGGCTTTGGGTGGGGCCCACA-GGCTGGGCTGGGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296879 92 + 130588469 AGACCTGGCACTTGGGCTCACCGGTGGAGAGGGGACA-CTGGCTGGGCCACCTGTCCTGTGGCTTTGGGCGGGGCCCACA-GGCTGGGCTGGGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999123 92 - 155834243 AGACCCAGCACTTGAGCTCAGCGGTGGAGAGGGGACA-CTGGCTGGGCCACCTGTCCCCTGGCTTTGGGTGGGGCCCACA-AGCTGGGCTGGGA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7529 89 -     13323 ---CCTAGCGCTTGGGCTCAAGGGTGGAGAGGGGGCG-CTGGCCCGGCCACCTGTCCTGCGGCTTTGGGCGGGACCCACA-GGCTAGCCTGGGA
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152132665 71 + 156508116 AGTCCTGGCACTCAGGCGCAGTGGTGGGGAGTGAGCA----------------------GGGCTTGAGGCAAGCCCCATA-TGCTATGCCAGGC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28610934 85 -  88915250 CATCCTGGTGCTCAGG---------GGAGTGGAGGCAACTGTCTGGGCCACCTGTCCTGTCGCTTTGGGCAGGGCTCACACAGCTGCCCTGAGG
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              133431 1162 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=11340.000000
s hg38.chr1_KI270714v1_random      27468  7 +     41717 ---GCTCAAC
s panTro4.chr1_GL389124_random     27053  7 +     50403 ---GCTCAAC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272935  7 -  28733288 ---GCTCAGC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034037  7 - 229590362 ---GCTCAGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916322  7 + 227556264 ---GCTCAGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066968  7 - 220367699 ---GCTCAGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296971  7 + 130588469 ---GCTCAGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999215  7 - 155834243 ---GCTCAGG
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              134593  7 +    135318 ---GTCCTGC
i tarSyr2.KE930532v1           I 1162 I 6
s micMur1.scaffold_20500            7619  7 -     13323 ---CGTCGGC
i micMur1.scaffold_20500       I 1 C 0
s mm10.chr4                    152132736  6 + 156508116 ----TTCGAA
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28611019 10 -  88915250 GAAAGTTGGT
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=28726.000000
s hg38.chr1_KI270714v1_random      27475 9 +     41717 GATTCCAGG
s panTro4.chr1_GL389124_random     27060 9 +     50403 GATTCCAGG
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272942 9 -  28733288 GATTCCAGG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034044 9 - 229590362 GATTCCAGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916329 9 + 227556264 GATTCCAGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066975 9 - 220367699 GATTCCAGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296978 9 + 130588469 GATTCCAGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999222 9 - 155834243 GATTCCAGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7626 9 -     13323 TATCCCAGG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132743 5 + 156508116 ----GCGGG
i mm10.chr4                    I 1 I 3
s canFam3.chr5                  28611029 9 -  88915250 GACCTGTGG
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              134600 6 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=48653.000000
s hg38.chr1_KI270714v1_random      27484 14 +     41717 GCCCCTG--CAGCCCT
s panTro4.chr1_GL389124_random     27069 14 +     50403 GCCCCTG--CGGCCCT
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272951 14 -  28733288 GCCCCTG--CAGCCCT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034053 14 - 229590362 GCCCCTG--CAGCCCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916338 14 + 227556264 GCCCCTG--CAGCCCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066984 14 - 220367699 GCCCCTG--CAGCCCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125296987 14 + 130588469 GCCCCTG--CAGCCCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999231 14 - 155834243 GCACTCG--CAGCCCT
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              134606 14 +    135318 -CCCCCGGCCGGGCC-
i tarSyr2.KE930532v1           I 6 I 8
s micMur1.scaffold_20500            7635 14 -     13323 CCCCCTG--CAGCCCT
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132751 14 + 156508116 GCCTCTA--CCACCCC
i mm10.chr4                    I 3 I 6
s canFam3.chr5                  28611038 14 -  88915250 CCCTCTC--TGGTCCT
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=508.000000
s hg38.chr1_KI270714v1_random      27498 7 +     41717 -ACCCGCC
s panTro4.chr1_GL389124_random     27083 7 +     50403 -TACCACC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272965 7 -  28733288 -ACCCGCC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034067 7 - 229590362 -AGCTGGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916352 7 + 227556264 -AGCTGGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211066998 7 - 220367699 -ATCTGGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297001 7 + 130588469 -ACCTGGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999245 7 - 155834243 -ACCTGGC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7649 6 -     13323 --GCTTGC
i micMur1.scaffold_20500       C 0 I 2
s mm10.chr4                    152132771 7 + 156508116 -TTCTGTC
i mm10.chr4                    I 6 C 0
s canFam3.chr5                  28611052 5 -  88915250 CTCCT---
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              134620 8 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=440.000000
s hg38.chr1_KI270714v1_random      27505 1 +     41717 -C
s panTro4.chr1_GL389124_random     27090 1 +     50403 -C
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22272972 1 -  28733288 -C
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034074 1 - 229590362 -C
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916359 1 + 227556264 -C
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067005 1 - 220367699 -C
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297008 1 + 130588469 -C
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999252 1 - 155834243 -C
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              134628 1 +    135318 -C
i tarSyr2.KE930532v1           I 8 I 200
s micMur1.scaffold_20500            7657 1 -     13323 -C
i micMur1.scaffold_20500       I 2 C 0
s mm10.chr4                    152132778 1 + 156508116 -C
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28611057 1 -  88915250 G-
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=201832.000000
s hg38.chr1_KI270714v1_random      27506 59 +     41717 GG-CCCCCTCTGCCTCCCAGAGATGAAAGGGGAAAGCCACTGTGGGAGCTTGGTCTAAGG
s panTro4.chr1_GL389124_random     27091 60 +     50403 GGCCCCCCTTTGCCTCCCAGAGATGAAAGGGGAAACCCACTGTGGGAGCTTGGTCTAAGG
i panTro4.chr1_GL389124_random C 0 M 624
s nomLeu3.chr24                 22272973 58 -  28733288 GG-CCCCCTCTGCCTCCCAGAGATGAAAGGGG-AAGCCACTGTGGGAGCTTGGTCTAAGG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034075 58 - 229590362 GG-CCCCCTCTGCCTCCCAGAGATGAAAGGGG-AAGCTACTGTGGGAGCTTGGTCTAAGG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916360 58 + 227556264 GG-CCCCCTCTGCCTCCCAGAGATGAAAGGGG-AAGCCACTGTGGGAGCTTGGTCTAAGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067006 58 - 220367699 gg-ccccctctgcctcccagagatGAAAGGGG-AAGCCACTGTGGGAGCTTGGTCTAAGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297009 58 + 130588469 AG-CCCCCTCTGCCTCCCAGAGGTGAAAGGGG-AAGCCACTGTGGGAGCTTGGTCTAAGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999253 58 - 155834243 AG-CCCTCTCTACCTCCCAGAGATGAAAGGGG-AAGCCACTGTGGTAGCTTGATCTAAGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7658 58 -     13323 AG-CCCCGGCCGCCTCCCAGGGATGAAAGGGG-AAGCCGCTGTGAGAGCTTGGTCGGAGA
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132779 54 + 156508116 -G-ACTTTTCTTTCCTCCAGAAGAAAAAA----AATCTTCTGGGCGAGCTTGGTGTACGG
i mm10.chr4                    C 0 I 5
s canFam3.chr5                  28611058 57 -  88915250 GG-CCCTCTCCACCTCAGAGAGATGAAAGGGG-AACCCGAC-TGACAGCTTGCTCCAAGA
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              134629 200 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=114593.000000
s hg38.chr1_KI270714v1_random      27565 57 +     41717 TGGCGTGAAGAGGGCAGCTACTGGAGCTGGCCTGCAGGTTTGGTGTCCCTCCCATGC
s nomLeu3.chr24                 22273031 57 -  28733288 TGGCATGAAGAGGGCAGCTACTGGAGCTGGCCTGCAGGTTCGGTGTCCCTCCCATGC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034133 57 - 229590362 TAGCATGAAGAGGGCAGCCACTGGAACTGGCCTGCAGGTTTGGTGTCCCTCCCATGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916418 57 + 227556264 TAGCATGAAGAGGGCAGCCACTGGAACTGGCCTGCAGGTTTGGTGTCCCTCCCATGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067064 57 - 220367699 TAGCATGAAGAGGGCAGCCACTGGAGCTGGCCTGCAGGTTTGGTGTCCCTCCCATGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297067 57 + 130588469 TGGCATGAAGAGGGCAGCCAGTGGAGCTGGCCTGCAGGTTTGGTGTCCCTCCCATGC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999311 57 - 155834243 TGGCATAAAGAGGGTGGTGGATAGAGCTGTCCTGGAAGTTCAGTGTCCCTCCCATGT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7716 57 -     13323 TGGCATAAAGGGGGTGTCAGTTGGAGTCTCTGTGGAGGCTCAGTGTCCCTCCCAAAG
i micMur1.scaffold_20500       C 0 I 1
s mm10.chr4                    152132838 51 + 156508116 CAGTAGTAAAAGGGTGGTG--CAGAGTCCCTGTGAAGCC----TGTCCCTCCCATGT
i mm10.chr4                    I 5 C 0
s canFam3.chr5                  28611115 44 -  88915250 TGGCACAAGGACAAGG-----TGGAGCCCCTGTGGTGGT----TGTCATTCCC----
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              134629 200 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M
e panTro4.chr1_GL389124_random     27151 624 +     50403 M

a score=253850.000000
s hg38.chr1_KI270714v1_random      27622 74 +     41717 CTCCCTTGCCCACTGGCCTTGTGACCTGAGTCACC------------T-TGTATGAATTGG-------------CCCTGGGGTGGCTTTGCCTTGGGCTT
s panTro4.chr1_GL389124_random     27775 74 +     50403 CTCCCTTGCCCACTGGCCTTGTGACCTGAGTCACC------------T-TGTATGAATTGG-------------CCCTGGGGTGGCTTTGCCTTGGGCTT
i panTro4.chr1_GL389124_random M 624 C 0
s nomLeu3.chr24                 22273088 74 -  28733288 CTCCCTTGCCCAGTGGCCTTGTGACCTGAGTCACC------------T-TGTATGAATTGG-------------CCCTGGGGTGGCTTTGCCTCGGGCTT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034190 73 - 229590362 CTCCCTTGCCCAGTGGCCTTGTGACCTGGGTCACC------------T-TGTATAAACTGG-------------CCCTGGGATGGC-TTGCCTTGGGCTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916475 73 + 227556264 CTCCCTTGCCCAGTGGCCTTGTGACCTGGGTCACC------------T-TGTATAAACTGG-------------CCCTGGGGTGGC-TTGCCTTGGGCTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067121 73 - 220367699 CTCCCTTGCCCAGTGGCCTTGTGACCTGGGTCACC------------T-TGTATAAACTGG-------------CCCTGGGGTGGC-TTGCCTTGGGCTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297124 73 + 130588469 CTCCCTTGCCCAGTGGCCTTGTGACCTGGGTCACC------------T-TGTATAAACTGG-------------CCCTGGGGTGGC-TTGCCTTGGGCTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999368 73 - 155834243 CTCCCTTGCCCAGTGGCCTTGTGACCTGGGTCACC------------T-CGTATAAACTGG-------------CCCTGGTGTGGC-TTGCCTTGGGCTT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7774 85 -     13323 TTCCCCTGCCCAGTGGCCTTAAGACCTGAGTCACTTGTGCCGGCTGGT-TACTCAGCTTGG-------------CACTGGGGTGTC-TTGCCTTGGGGTT
i micMur1.scaffold_20500       I 1 C 0
s mm10.chr4                    152132889 70 + 156508116 CGCCTCCGCCCCATGGCCTTGTGACCTGGCTCACC--------------TGTGCAAACTGA-------------TC---GTTCAGCTCCACCTTGGGCTG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28611159 87 -  88915250 CTCCCCAACCCGGTGACCTGGAGACCTGGGTCACC------------TGTGGGCAAACTGGTTACTTAGCTCCACTCTGGAGTGGC-TTGCTTTGGGCTG
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              134629 200 +    135318 I
e gorGor3.chr1                 222981959 4173 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=18667.000000
s hg38.chr1_KI270714v1_random      27696 4 +     41717 AAGA
s panTro4.chr1_GL389124_random     27849 4 +     50403 AAGA
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222986132 4 - 229507203 AAGA
i gorGor3.chr1                 I 4173 I 1802
s nomLeu3.chr24                 22273162 4 -  28733288 AAGA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034263 4 - 229590362 AAGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916548 4 + 227556264 AAGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067194 4 - 220367699 AAGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297197 4 + 130588469 AAGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999441 4 - 155834243 AAGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7859 4 -     13323 GAGA
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132959 4 + 156508116 GGGA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28611246 4 -  88915250 GAGA
i canFam3.chr5                 C 0 C 0
e tarSyr2.KE930532v1              134629 200 +    135318 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=22858.000000
s hg38.chr1_KI270714v1_random      27700 4 +     41717 GAGA
s panTro4.chr1_GL389124_random     27853 4 +     50403 GAGA
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273166 4 -  28733288 GAGA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034267 4 - 229590362 GAGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916552 4 + 227556264 GAGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067198 4 - 220367699 GAGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297201 4 + 130588469 GAGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999445 4 - 155834243 GAGA
i calJac3.chr7                 C 0 C 0
s tarSyr2.KE930532v1              134829 4 +    135318 GAGA
i tarSyr2.KE930532v1           I 200 N 0
s micMur1.scaffold_20500            7863 4 -     13323 GAGA
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152132963 4 + 156508116 GAGA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28611250 4 -  88915250 GATA
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=425229.000000
s hg38.chr1_KI270714v1_random      27704 119 +     41717 ACTGCAAGGTCCCAGGCTCCAGCAGGACCCCAGGGAGCTGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTTA----GACCATCCTTGC---------------------------------TCTGTTCCT-----GTGGCCAG
s panTro4.chr1_GL389124_random     27857 119 +     50403 ACTGCAAGGTCCCAGGCTCCAGCAGGACCCCAGGGAGCCGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTTA----GACCATCCTTGC---------------------------------TCTGTTCCT-----GTGGCCAG
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273170 119 -  28733288 ACTGCAAGGTCCCAGGCTCTAGCAGGACCCCAGGGGGCTGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTTA----GACCATCCTTGC---------------------------------TCTGTTCCT-----GTGGCCAG
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034271 119 - 229590362 AATGCAAGGTCCCAGGCTCCAGCAGGACCCCAGAGCGCTGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTCA----GGCCATCCTTGC---------------------------------TCTATTCCT-----GTGGCCAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916556 119 + 227556264 AATGCAAGGTCCCAGGCTCCAGCAGGACCCCAGAGCGCTGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTCA----GGCCATCCTTGC---------------------------------TCTGTTCCT-----GTGGCCAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067202 119 - 220367699 AATGCAAGGTCCCAGGCTCCAGCAGGACCCCAGAGCGCTGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTCA----GGCCATCCTTGC---------------------------------TCTGTTCCT-----GTGGCCAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297205 119 + 130588469 AATGCAAGGTCCCAGGCTCCAGCAGGACCCCAGAGCGCTGCCACACC-ACATCTGGCCACCTGTGACCTCAGGCTGTCC-CCTCACCTCTCA----GGCCATCCTTGC---------------------------------TCTGTTCCT-----GTGGCCAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999449 119 - 155834243 ACTGCAAGGTCCCAAGCTCCAGCAGGACCCCAGGGGGCTGTCACACC-ACATCTGGCCACCTGCGACCTCAGGCTGTCC-CCTCACCTCTCA----GACCAGTCTTGC---------------------------------CATGTTCCT-----GTGGCCAG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            7867 120 -     13323 AAGGCAAGGTCCCCGGCTCCATTAGGACCCTAGGGGACTGCCACCCCTACACCAGGCCACCTGTAGCCTTAGGCTGTCCACCTCACCTCTCA----GGACAGCCTTGC---------------------------------TCTGTTCCT------TGGCCAG
i micMur1.scaffold_20500       C 0 M 327
s mm10.chr4                    152132967 160 + 156508116 ATTGCAAGGT-CTGGGCTCTGGCAAGGCTTTATGGGTTTGTCACCCT-ACACCTGGCCACCCGTGGTCTTGGGCTGTCC-CCTCACCTCTCCTTCTGTCCAGCCCTGCTTTGGGTCACCCTGCTATCACATCTGACCATCGTCTGCTCCTCAGCTTTAGCCAA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28611254 116 -  88915250 --ACCAAAGGTTAGGGCTCCCACAGGACCCTCGGTGGCCTCTACCCC-ATACTCAGCCACCTGTGGTCTCGGGTTGTC--CCTCCCAGCCCA----GCCCAGCCTTAT---------------------------------TCTGCCCTG-----CTGGCCAA
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=7092.000000
s hg38.chr1_KI270714v1_random      27823 2 +     41717 AA
s panTro4.chr1_GL389124_random     27976 2 +     50403 AA
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273289 2 -  28733288 AA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034390 2 - 229590362 AA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916675 2 + 227556264 AA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067321 2 - 220367699 AA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297324 2 + 130588469 AA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999568 2 - 155834243 AA
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152133127 2 + 156508116 AA
i mm10.chr4                    C 0 I 165
s canFam3.chr5                  28611370 2 -  88915250 GA
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_20500            7987 327 -     13323 M
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=109930.000000
s hg38.chr1_KI270714v1_random      27825 52 +     41717 CGCCAGTGTTCCCCAGGGCACCCTGCCGAGGATACCCGCAATTGCTCAGACC
s panTro4.chr1_GL389124_random     27978 52 +     50403 CGCCAGTGTTCCCCAGGGCACCCTGCCAAGGATACCCGGAATTGCTCAGACC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273291 52 -  28733288 TGCCAGTGTTCCCCAGGGCACCCTGCCCAGGGTACCCAGAATTGCTCAGACC
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034392 52 - 229590362 TGCCAGTGTTCCCCAGGTCACCCTGCCCAAGATTCCCAGAATTGCTCAGACC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916677 52 + 227556264 TGCCAGTGTTCCCCAGGTCACCCTGCCCAAGATTCCCAGAATTGCTCAGACC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067323 52 - 220367699 TGCCAGTGTTCCCCAGGTCACCCTGCCCAAGATTCCCAGAATTGCTCAGACC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297326 52 + 130588469 TGCCAGTGTTCCCCAGGTCACCCTGCCCAAGATTCCCAGAATTGCTCAGACC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999570 37 - 155834243 CGCCAGAGTTTCCCA---------------AATTTCCAAAATTGCTCAGACC
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28611372 38 -  88915250 ------------CCTAGGCTCCCTGCCTAGGACTCTCGG--CTACTCAGAAC
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152133129 165 + 156508116 I
e micMur1.scaffold_20500            7987 327 -     13323 M
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=21582.000000
s hg38.chr1_KI270714v1_random      27877 6 +     41717 AGACCT
s panTro4.chr1_GL389124_random     28030 6 +     50403 AGACCT
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273343 6 -  28733288 AGACCT
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034444 6 - 229590362 AGACCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916729 6 + 227556264 AGACCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067375 6 - 220367699 AGACCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297378 6 + 130588469 AGACCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999607 6 - 155834243 AGACCT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            8316 6 -     13323 AGACTT
i micMur1.scaffold_20500       M 327 C 0
s canFam3.chr5                  28611410 6 -  88915250 AGCTCT
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152133129 165 + 156508116 I
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=997247.000000
s hg38.chr1_KI270714v1_random      27883 364 +     41717 CTGCCCCAATCCCTGCTCCAG---AGCCTCAGCCAGGCGCCTGCAGG----------------------CCCCAGACATCCCTAGG---CACCTCACACTTCACCTACCCACCCTGCCCT------CATCC-TCTCCACACAGGCTC-GCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--AGCTCAAGCCCTAAACT--GGAACCAGCCACAGCTTCACTTCC-TCCCAGC----------------------------------------------------CCCTACTG--------------------CCGGTGGGCGCCCAGCCCTGCTAGTGCCTGctc--------------accttcctccctccctccttccagccctTACCTCTACAGCCATGCCACT---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTGACACTCTCCGACTGAGCCTGGGGCTGTGGGGGT
s panTro4.chr1_GL389124_random     28036 363 +     50403 CTGCCCCAATCCCTGCTCCAG---AGCCTCAGCCAGGCGCCTGCAGG----------------------CCCCAGACATCCCTAGG---CGCCTCACACTCCACCTACCCACCCTGGCC-------CATCC-TCTCCACACAGGCTC-GCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--AGCTCAAGCCCTAAACT--GGAACCAGCCACAGCTTCACTTCC-TCCCAGC----------------------------------------------------CCCCACTG--------------------CCGGTGGGCGCCCAGCCCTGCTAGTGCCTGCTC--------------ACCTTCCTCCCTCCCTCCTTCCAGCCCTTACCTCTACAGCCATGCCACT---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTGACACTCTCCGACTGAGCCTGGTGCTGTGGGGGC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273349 362 -  28733288 CTGCCTCAACCGCTGCTCCAG---AGCCTCAGCCAGGGGCCTGCAGG----------------------CCCCAGACATCCCTAGG---CGCCTCACACTCCACCTACCCACCCTGGCCT------CATCC-TCTCCACACAGGCTC-GCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--AGCTCAAGCCCTAAACT--GGAACCAGCCACAGCTTCACTTCC-TCCCAGC----------------------------------------------------TCCCACTG--------------------CCGGTGGGCGCCCAGCCCTGCTAGTGCCTGCTC--------------GCCTTCCCCCCACCCTCCTTCCAGCCCTCACCTCCACAGCCATGCCACT---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTGACACTCTCTGACTGAGCCTGGGGCTGTGGGG--
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034450 363 - 229590362 CTGCCCCCACTCCTGCTCCAG---AGCCTCAGCCAGGGGCCTGCAGC----------------------CCCCAGACATCCCTAGG---TGCCTCACACTCCACCTGCCTGCCCTGGCCT------CATCC-TCTCCACACAGGCTCTGCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--ATCTCGAGCCCTAAACT--GGAACTAGCCACAGCTTCACTTCC-TCCCAGC----------------------------------------------------CCCCACTG--------------------CCGGTGGGCACCCAGCCCTGCTAGTGCCTGCTC--------------ACCTTCCCCCCACACTCCTTCCAGCCCTCACCTCCACAGCCATGCCACT---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTAACACTCTCTGAC--AGCCTGGGGCTGTGGGGGT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221916735 363 + 227556264 CTGCCCCCACTCCTGCTCCAG---AGCCTCAGCCAGGGGCCTGCAGC----------------------CCCCAGACATCCCTAGG---TGCCTCACACTCCACCTGCCTGCCCTGGCCT------CATCC-TCTCCACACAGTCTCTGCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--ATCTCGAGCCCTAAACT--GGAACTAGCCACAGCTTCACTTCC-TCCCAGC----------------------------------------------------CCCCACTG--------------------CCGGTGGGCACCCAGCCCTGCTAGTGCCTGCTC--------------ACCTTCCCCCCACACTCCTTCCAGCCCTCACCTCCATAGCCATGCCACC---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTAACACTCTCTGAC--AGCCTGGGGCTGTGGGGGT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067381 365 - 220367699 CTGCCCCCACTCCTGCTCCAG---AGCCTCAGCCAGGGGCCTGCAGC----------------------CTCCAGACATCCCTAGG---TGCCTCACACTCcacctgcctgccctggcct------catCC-TCTCCACACAGGCTCTGCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--ATCTCGAGCCCTAAACT--GGAACTAGCCACAGCTTCacttcc-tcccagc----------------------------------------------------ccccactg--------------------cCGGTGGGCACCCAGCCCTGCTAGTGCCTGCTC--------------ACCTTCCCCCCACACTCCTTCCAGCCCTCACCTCCACAGCCATGCCACC---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTAACACTCTCTGACTGAGCCtggggctgtgggggt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297384 365 + 130588469 CTGCCCCCACTCCTGCTCCAG---AGCCTCAGCCAGGGGCCTGCAGC----------------------CCCCAGACATCCCTAGG---TGCCTCACACTCCACCTGCCTGCCCTGGCCT------CATCC-TCTCCACACAGGCTCTGCTTC-CCTCCA----------------------------GGGCTCCCAGCTC----------AGGCCTGGCCCTTTCCC---CCAGG--ATCTCGAGCCCTAAACT--GGAACTAGCCACAGCTTCACTTCC-TCCCAGC----------------------------------------------------CCCCACTG--------------------CCGGTGGGCACCCAGCCCCGCTAGTGCCTGCTC--------------ACCTTCCCCCCACACTCCTTCCAGCCCTCACCTCCACAGCCATGCCACC---GGCACCTTCCACCTGGC--------AGCCACCTCCCTTGGGTAACACTCTCCGACTGAGCCTGGGGCTGTGGGGCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999613 362 - 155834243 TTGCCCCCAGCCCTGCTCCAG---AGCCTCCGCCAGGGGCCTGCAGG----------------------C-CCAGACGTCACTAGG---TGTCTTACATTCCATCTGCCCACCCTGGCCT------CATCC-CCTCCACACAGGCTC-ACTTC-CCTCTG----------------------------GGGCTCCCACCTC----------AGGCCTGATCCTCTCTG---CACAG--AGCCCAAGCCCTAAACT--GGAACTGGCTGCAGCTTCCCCTCCTTCCCAGC----------------------------------------------------CCCCACTG--------------------CCAGTGGGCACCCGACCCTGCTAGTGCCCGCTC--------------ATCTTCCCTCCACCCTCCTCCCAGCCCTCCCCTTCACAGGCATGCCATC---GGCAGCCTCCACCTGGC--------AACCACCTCCCTTGGGTACCA--CTCCAACAGAGCCCAGGGCTGTGGGGAT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            8322 321 -     13323 CTACTCT--CCCCTGCTCCGG---AGCCTCAGCCAGGAGCCTGCAGG----------------------CCCTGGATGTCCCCAGG---TGCCTCACATT---CATGCCCACACTGGCCT------CATCC-ACTTCTCAAAGCCT--GCTTC-CC-CCA----------------------------GGGCT-------------------------------------------------CAACCCATAAATG--GGAGCCAGCCTCAGCGCCACCTCC--CCCAGC-----------------------------------------------------CCCATTG--------------------TCAGCGGGTGCCAAGTCCTGCTGGTGCTCTTTC--------------ACCCTTCCCCTACCTGCCCCCTGGCCCTCACTTCCACAGCCATGCCACC---AACACCTCCCACTTGGA--------AGACACCTCCCTGGGGTGCCACTCTCCACCTGAGCCCAGGGCTGTGTGGGT
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152133294 526 + 156508116 CCGCCTCAGCCTCTGCTCCTAGCTAGCCT--GTCAGCAGACAGCAGGATGTACTAGTGCACAATGTTGTCTTCAGCACTGTCTGGGCCTCACCTTCCAGTCAAACTGCAGTGCCTCGCCTGAGGAAGATAC-TCCACGTATCACCTTCCTTTC-CGTTTATTACTTTGtttggtttggttttggagagggtctctcctctctcctctgtgtagccctggctgt--------ccagg--aactcactctgtaaagc--ag-gctggccttgcctctacctcc-ccagagctgggattaaaggcatgtgccaccatgatctgactcaagggtccttttTTTTCCCCCtttggtttttcaagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcccctgcctctcaagtgctgggattaaaggcgtgcgccaccacgcccggttCAAGTGTCCGTTTTAGGGTGCTTTTCCCTAACTGAGCTCTGCACTGTAAGTAT
i mm10.chr4                    I 165 I 7
s canFam3.chr5                  28611416 347 -  88915250 -----------CTGGCTCCAG---AGTTTCAGCCAGGAGCCCAGAGG----------------------C-CCTGACATCCT-------GGCATTGCATCCTCTGTGCCCACACTGGACA------CAGACACCTTCCCATAAGCTG-GCTTCTCCCCCA----------------------------TGGCTCCTATCTC----------AGGACCACCCCTTCCACCAACCTGGCCACTCAAAGCCCCAAACTCAGGAGCCAGCTTCAGCCTCACCCCT-CCCTCAG----------------------------------------------------CCCCACCC------------------------TGAGTGCTGAGTCCTGTTAGTGCTCTCTC--------------TCCCTGCCTCTACCCTCCTCCTGGCCCTT-----CACAGCTGTGCCACC---TGCATCTCCTACCTGGA--------AGACACC-CCCTTGGGGGCCATTCTCCACCTGAGCCTGGGGCTATGGGCAT
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=65662.000000
s hg38.chr1_KI270714v1_random      28247 25 +     41717 GG-GGGGGCATGCTTGGGGAGGGGCA
s panTro4.chr1_GL389124_random     28399 25 +     50403 GG-GGGGGCATGCTTGGGGAGGGGCA
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273711 25 -  28733288 GG-GGGGGCAAGCTTGGGGAGGGGCA
i nomLeu3.chr24                C 0 C 0
s rheMac3.chr1                 220034813 26 - 229590362 GGTGGGGGCATGCTTGGGGAGGGGCA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221917098 26 + 227556264 GGTGGGGGCATGCTTGGGGAGGGGCA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067746 26 - 220367699 ggtgggggcatgcttggggaggggCA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297749 26 + 130588469 GGTGGGGGCATGCTTGGGGAGGAGCA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999975 21 - 155834243 GT-----GCGTGTTTGGGGAGGGGCA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            8643 23 -     13323 GT---GTGCATGTCTGTGGAGGGGCA
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28611763 21 -  88915250 -----GTGCAGGTCTGTGGAGAGGCA
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152133820  7 + 156508116 I
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=1087952.000000
s hg38.chr1_KI270714v1_random      28272 334 +     41717 GTCTCCATGCATTC----TCTGTCAACTCCATGACAACCCGGCCACTCTGTGCAAGAGGTGGCACAGG-CC-CAGTTCCTGGTGAGGAACAGCTGTCTGGACCTGCG-TCCTTCACC--CCCCAGCTCCC-ATGGAG--------GACAGTGACCTGCTCTTACTCTCCTCCCAGT--CCAGTGTCCAGCCCTGACCCCTCGTGGGACTCGCCAGGAGCTTTGACTCTTGAATATGCCATG--GACCCAGGGACCCCCACCCTGTGCCCACTAGT----GAGGCCAGGCCTTTGGCCTGACTGGCC-CCCATCAGCCCAGTACCCCTGCTGGGAGGCAGGCAGTGGGTGAGGGCTCACTAC
s panTro4.chr1_GL389124_random     28424 334 +     50403 GTCTCCATGCATTC----TCTGTCAACTCCATGACAACCCGGCCACTCTGTGCAAGAGGTGGCACAGG-CC-CAGTTCCTGGTGAGGAACAGCTGTCTGGACCTGCG-TCCTTCATC--CCCCAGCTCCC-ATGGAG--------GGCAGTGACCTGCTCTTACTCTCCTCCCAGT--CCAGTGTCCAGCCCTGACCCCTCGTGGGACTCGCCAGGAGCTTTAACTCTTGAATATGCCATG--GGCCCAGGGACCCCCACCCTGTGCCCACTAGT----GAGGCCAGGCCTTTGGCCTGACTGGCC-CCCATCAGCCCAGTACCCCTGCTGGGAGGCAGGCAGTGGGTGAGGGCTCACTAC
i panTro4.chr1_GL389124_random C 0 C 0
s nomLeu3.chr24                 22273736 330 -  28733288 GTCTCCATGCATTC----TCTGTCAACTCCATGACAACCTGGCCACTCTGCACAAGAGGTGGCACAGG-CC-CAGTTCCTGGGGAGGCACAGCTGTCTGGACCTGCG-TCCTTCACC--CCCCAGCTCCC-ATGGAG--------GGCAGTGACCTGCTCTTACT---CTCCAAGT--CCAGTGTCCAGCCCTGACCCCTCGTGAGACTCACCAGGAGCTTTGACTTTTGAACATGCCATG--GACCTAGGGATCCCCACCCTATGCCCACTAGT----GAGGCCAGGCCTTTGGCCTCACTGGCC-CCCTTCAGCCCAGTCCCCCTGCTGGGAGGCAGGCAG-GGGTGAGGGCTCACTAC
i nomLeu3.chr24                C 0 N 0
s rheMac3.chr1                 220034839 334 - 229590362 GTCTCCATGAATTC----TCTGTCAACTTCATGACAACCCAGCCACTCTGTGCAAGAGGTGGCACAGG-CC-TAGTTCCTGGTGAGGCACAGCTGTCTGGACCTGCG-TCCTTCACT--CCCCGGCTCCC-ATGGAG--------GGCGGTGACCTGCTCTTACTCTCCTCCCAGT--CCAGTGTCCACCCCTGACCCCTCATGGGACTCGCCAGGAGCTTTGACTCTTGAACATGCCATG--GACCTAGGGACCCCCACCCTATGCCCACTAGT----GAGGCCAGGCCTTTGGCCTCACTGGCC-CCCATTGGCCTAGTCCCCCTGCCGGGAGGCAGGCAGGGGGTGAGGGCTCACTAC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221917124 334 + 227556264 GTCTCCATGAATTC----TCTGTCAACTTCATGACAACCCAGCCACTCTGTGCAAGAGGTGGCACAGG-CC-CAGTTCCTGGTGAGGCACAGCTGTCTGGACCTGCG-TCCTTCACT--CCCCGGCTCCC-ATGGAG--------GGCGGTGACCTGCTCTTACTCTCCTCCCAGT--CCAGTGTCCACCCCTGACCCCTCATGGGACTCGCCAGGAGCTTTGACTCTTGAACATGCCATG--GACCTAGGGACCCCCACCCTATGCCCACTAGT----GAGGCCAGGCCTTTGGCCTCACTGGCC-CCCATCGGCCTAGTCCCCCTGCCGGGAGGCAGGCAGGGGGTGAGGGCTCACTAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211067772 334 - 220367699 GTCTCCATGAATTC----TCTGTCAACTTCATGACAACCCAGCCACTCTGTGCAAGAGGTGGCACAGG-CC-CAGTTCCTGGTGAGGCACAGCTGTCTGGACCTGCG-TCCTTCACC--CCCCAGCTCCC-ATGGAG--------GGCGGTGACCTGCTCTTACTCTCCTCCCAGT--CCAGTGTCCAGCCCTGACCCCTCATGGGACTCGCCAGGAGCTTTGACTCTTGAACATGCCATG--GACCTAGGGACCCCCACCCTATGCCCACTAGT----GAGGCCAGGCCTTTGGCCTCACTGGCC-CCCATCGGCCTAGTCCCCCTGCTGGAAGGCAGGCAGGGGGTGAGGGCTCACTAC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125297775 334 + 130588469 GTCTCCATGAATTC----TCTGTCAACTTCATGACAACCCAGCCACTCTGTGCAAGAGGTGGCACAGG-CC-CAGTTCCTGTTGAGGCACAGCTGTCTGGACCTGCG-TCCTTCACC--CCCCGGCTCCC-ATGGAG--------GGCGGTGACCTGCTCTTACTCTCCTCCCAGT--CCAGTGTCCAGCCCTGACCCCTCATGGGACTCGCCAGGAGCTTTGACTCTTGAACATGCCAAG--GACCTAGGGACCCCCACCCTATGCCCACTAGT----GAGGCCAGGCCTTTGGCCTCACTGGCC-CCCATCGGCCTAGTCCCCCTGCTGGGAGGCAGGCAGGGGGTGAGGGCTCACTAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 114999996 331 - 155834243 GTCTATATGCATTC----TCTGTTAACTCCATGACAACCCGGCCACTCTGTGCAAGAGGTGGCACAGG-CC-CAGTTCCTGGTGAGGCACAGCTGTCTGGACCTGCG-TCTTTCACT--TCCCAGCTCCC-ATGGAG--------GGTGGCAACCTGGTCTTACTCTCCTCCTGGT--CCAGTGTCCAGCCCTGATCCCCAGTGGGAATCGCCAGGAGCTTTGACTCTTGAACATGCCATG--GACAGAGGGACCCCCACCCTATGTCCGCTA-T----GAGGCCAGGCCTTTGGCCTCAGAGGCC-CCCATGAGCCCAGTCCCCC-GCTGGGAGGCAGGCAG-GGGTGAGGTCTCACTAC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            8666 293 -     13323 ATCAACATGCATCC----TCTGTCAACTCGGTGACAATCCTGC-----------AAAAGTGGCACAGA-CC-CAGCTTCTGGCAGGGCATAGCTGTGTGGGTATATG-TCCCTTCAC--CCCCAGCTCCCTGCTGAG--------GGCAGTGGCTTTGTCTTACCCACCTCCCAGT-CCCAGCACCCAGCCCCAAGCCCCCATGGGACTGGCCAAGAGCTTCAACTCTTGAACATGCCATG--GACCCTAGGA-CCCCACCCT------------------------GCCCT-----------GTC-CCCGTCAGCCCAGTCCCACTGCTGGTAGGCAGGCAGGGGCTGAGAGCTCACTAC
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152133827 329 + 156508116 ATCTGTATGCCTTCCTTTTCTGCTAACTCCAGGATAGCCCTGACACTCTGTGCAGGATGT---ACCTA-CCACAGCTCCTCAGGAGGCCTGACTGTCT----CTGT--TCCTTCAA---CCTCAGCTCCT--TAGAGTTGACTATAATGGTGACTTTCTC---CCCTATACCATTT--CCAATGGTCAGCCCTGAGCTATCATGGACCTTGCTAGGACCTTCAGTTCTCAAACTTACCCTG--GGCCCAGGAAGCCCCA-TTTATGACCACAAGTCAACCAGGCCAGGTCCCCATCGGCCCAGTTC-CCAGTCAGCCCAGTCCTACTGCTAGTCAACAGG--------GCAAGCTTTCTAC
i mm10.chr4                    I 7 I 1
s canFam3.chr5                  28611784 341 -  88915250 GTTTGCACATATGC----TTTGCCAATTCCAAGACCACCCTGCCACTCTGTGCAAGAGGTGAGGGAGGACT-CAGCTCCCTGAGAGGCAAAactgcctggtaatatgttccttcactcaccctagctccc--gagag--------ggtagtggctttgtcttcctcatctccctgtcccccgtgtcgagccctgggtcCCCATGGGGCTGGCCAGGAGCTTTGGCTCTTGAATAAGCCACACTGGCCCAGAGACCCCCACCCTGTGCCCATGAAC----CAGG-CAGATTCTTGGCCTCAAGGGCTGCCTATCAACCCAGTCTTGGTGCTGGGAGGCGGGCAGGGGGTTAATGTTCGCTAC
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=67011.000000
s hg38.chr1_KI270714v1_random      28606 19 +     41717 CTCCTTCTTGAGGGCCTCT
s panTro4.chr1_GL389124_random     28758 19 +     50403 CTCCTTCTTGAGGGCCTCT
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                 220035173 19 - 229590362 CTCCTTCTTGAGGGCCTCC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221917458 19 + 227556264 CTCCTTCTTGAGGGCCTCC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211068106 19 - 220367699 CTCCTTCTTGAGGGCCTCC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125298109 19 + 130588469 CTCCTTCTTGAGGGCCTCC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115000327 19 - 155834243 CTCCTTCTTGAGGGCCTCT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            8959 19 -     13323 CTCCTTCTTGGGGGCCTCG
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152134157 19 + 156508116 TACCTCCTTGAGCGAGTCC
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28612125 19 -  88915250 CTCCTTCTTGAGGGCCTCC
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I
e ponAbe2.chr1                 224067364 1256 + 229942017 M

a score=474203.000000
s hg38.chr1_KI270714v1_random      28625 110 +     41717 GTCTCCACGTGGCGGAGTTTGTTCTTGGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTTGGGAGA-TGGGTAGCTAGGTGGGGGTGGGGGCAGTTGGGT
s panTro4.chr1_GL389124_random     28777 110 +     50403 GTCTCCACGTGGCGGAGTTTGTTCTTGGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTTGGGAGA-TGGGTAGCTAggtgggggtgggggcagttgggt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224068654 115 + 229942017 GTCTCAACGTGGCGGAGTTTGTTCTTGGTCTGCCATGTAGATGTCCAGCTGCCTGTGGTCCCCACAGGAGACCTTGGGAGGCTGGGTAGCCAGGTGGGGATGGGGGCAGTTGGGT
i ponAbe2.chr1                 M 1256 C 0
s rheMac3.chr1                 220035192 110 - 229590362 GTCTGCACGTGGCGGAGTTTGTTCTTCGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTTGGGAGC-TGGGTAGCCAGGTGGGGGTGGGGGCAGTTGGGT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221917477 110 + 227556264 GTCTGCACGTGGCGGAGTTTGTTCTTCGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTTGGGAGC-TGGGTAGCCAGGTGGGGGTGGGGGCAGTTGGGT
i macFas5.chr1                 C 0 M 100
s papAnu2.chr1                 211068125 110 - 220367699 GTCTGCACGTGGCGGAGTTTGTTCTTCGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTtgggagc-tgggtagccaggtgggggtgggggcagttgggt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125298128 110 + 130588469 GTCTGCACGTGGCGGAGTTTGTTCTTCGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTTGGGAGC-TGGGTAGCCAggtgggggtgggggcagttgggt
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115000346 110 - 155834243 GTCTCCACGTGGCGGAGTTTGTTCTTGGTCTG-CATGTAGATGT-CAGCTGCCTGTGGT-CCCACAGGAGG-CTTGGGAGC-GGGGTAGCCAggtgggggtgggggtagttgggt
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            8978 110 -     13323 GTGTCCACATGGCGGAGTTTGTTCTTGGTCTG-CATATAGATGT-CAGCTGCATGTAGC-CCCACCGGGGG-CTTGGGAGC-TGGGTAGCCAGGAGGGGGCGGGGGCAGTTGGGT
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152134176 110 + 156508116 ACCTCCACATGGCGAAGCTTGTTCTTGGTCTG-CATGTAAATGT-TATTCAGATGCAGT-CCCACAGGGGG-ATTGGGAGC-TGGGTAGCCTGGTGGAGGTGGGGGCGGCTGGGT
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28612144 110 -  88915250 GTCTCCACGTGGCGGAGTTTGTTCTTGGTCTG-TATGTAGATAT-CAGCTGCATGTGGC-CCCATGGGGGG-CTGGGGAGC-TGGGTAGCCTGGTGGGGGAGGGGGCAGTTGGGT
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I

a score=40177.000000
s hg38.chr1_KI270714v1_random      28735 21 +     41717 G-CCTGGGGGC-GGGGGTGGCGG
s panTro4.chr1_GL389124_random     28887 21 +     50403 g-cctgggggc-gggggtggcgg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224068769 23 + 229942017 GCCCTGGGCGTGGGGGGTGGCGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220035302  4 - 229590362 G-CCT------------------
i rheMac3.chr1                 C 0 I 21
s papAnu2.chr1                 211068235 21 - 220367699 g-cctgggggc-gggggtggcgg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125298238 21 + 130588469 g-cctgggggc-ggggggggcgg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115000456 21 - 155834243 g-cctgggggc-gggggtggtgg
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            9088 21 -     13323 G-CCTGGAGGT-GGTGGTGGCGG
i micMur1.scaffold_20500       C 0 I 3
s mm10.chr4                    152134286 21 + 156508116 G-CCTGTGGGT-GGTGGGGGTGG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28612254 21 -  88915250 G-CTCAGGGGT-GGGGGCGGTGG
i canFam3.chr5                 C 0 C 0
e macFas5.chr1                 221917587 100 + 227556264 M
e gorGor3.chr1                 222986136 1802 - 229507203 I

a score=1862665.000000
s hg38.chr1_KI270714v1_random      28756 595 +     41717 GGGGAAGCT------------GGGTGGGGGTGGTGGGGGTATGGGCTTCCCAATCGTGCCCCAAGGCAGGCCCAGCTCTGGGTTCAGCATGTCCATGTAGCTCTGTATGTCTGCAGCTCTAGTGCTGGGAAGCCCTGGG--------GAGGCAGAAGGAAGGGCCAGATTTGGAAGCATGCAGACAGGCTTTCCCCCAAGAATGAGACTCTCCACCACCTGGAAACAACTTGCCGAGGGCCAAGGTGGGCTCC-GGGCACCACTTGGTAC-ACCT--GTTGTGGCCCCTGGCGTTGCTGGGCTT--------------------CCTCTccctggccctgccctgccccagcccagcactTATTGGGGGAAGACCAGGCACTCCGGTTTGGAGGGGAAGCACT--GGAGGCTTT--------CGTGTG------TCTAGAGGGC------AGGGTCACCTGGA-------------AGGGGA-GGGTCTACTCCTTG--------------GGAGTACAGATGGCCACATCCAATCTTTGCAGGGCAC-CCTGCCAGGTCTGGAGGCCACCATCTGGTGGCGTGAAGCAGGCA------TTGCAAGTGGATGGACGCCCATGCTCAGGGCACGGTCAGGGTGTGTGTACACACAAGCCTGCAGTCTGCCGAGGCGATTGTGAATTTGTGTATGTTT
s panTro4.chr1_GL389124_random     28908 595 +     50403 ggggaagct------------gggtgggggtggtgggggtatgggCTTCCCAATCGTGCCCCAAGGCAGGCCCAGCTCTGGGTTCAGCATGTTCATGTAGCTCTGTATGTCTGCAGCTCTAGTGCTGGAAAGCCCTGGG--------GAGGCAGAAGGAAGGGCCAGATTTGGGAGCATGCAGACAGGCTTTCCCCCAAGACTGAGACTCTCCACCACCTGGAAACAACTTGCCGAGGGCCAAGGTGGGCTCC-GGGCACCACTTGGTAC-ACCT--GTTGTGGCCCCTGGCGTTGCTGGGCTT--------------------CCTCTCCCTGGCCCTGCCCTGCCCCAGCCCAGCACTTATTGGGGGAAGACCAGGCACTCCGGTTTGGAGGGGAAGCACT--GGAGGCTTT--------GGTGTG------TCTAGAGGGC------AGGGTCACCTGGA-------------AGGGGA-GGGTCTACTCCTTG--------------GGAGTACAGATGGCCACATCCAATCTTTGCAGGGCAC-CCTGCCAGGTCTGGAGGCCACCATCTGGCGGCGTGAAGCAGGCA------TTGCAAGTGGATGGACGCCCATGCTCAGGGCATGGTCAGGGTGTGTGTACACACAAGCCTGCAGTCTGCCGAGGCGATTGTGAATTtgtgtatgttt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224068792 595 + 229942017 GGGGAAGCT------------GGGTGGGGGTGGTGGGGGTGTGGGCTTCCCAATCGTGCCCCGAGGCAGGCCCGGCTCCGGGTTCAGCATGTCCATGTAGCTCTGTGTGTCTGCAGCTCTAGTGCT-GAAAGCCCTGGG--------GAGGCAGAGGGAAGGGCCAGATTTGGGAGCATGCAGACAGGCTGTCCCCCAAGACTGAGACTCTCCACCACCTGGAAACAACTTGCCGAGGGCCACGGTGGGCTCT-GGGCACCACTTGGTAC-ACCT--GCTGTGGCCCCTGGTGGTGCTGGGCTT--------------------CCCCTCCCTGGCCCTGCCCTGCCCCAGCCCAGCACTTACTGGGGGAAGACCAGGCACTCCGGTTTGGAGGGGAAGCACT--GGAGGCTTT--------GGTGTG------TCTAGAGGGC------AGGGTCACCTGGA-------------AGGGGA-GGGTCTACTCCTTG--------------GGAGTACGGATGGCCACATCCAATCTTTGCAGGGCACTCCTGCCAGGTCTGGAGGCCACCATCTGGCGGCGTGAAGCAGGCA------TTGCAAGTGAACAGACGCCCATGCTCAGGGCATGGTCAGGGTGTGTGTACACACAAGCCTGCAGTCTGCCAAGGCAATTGTGCACTTGTGTATGCTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220035327 594 - 229590362 NNNNAAGCT------------GGGTGGGGGTGGTGGGGGTGTGGGCTTCCCAATCATGCCCTGAGGCAGGCCCAGCTCCGGGTTCAGCATGTCCATGTAGCTCTGTATGTCTGCAGCTCTAGTGCTGGAAAGCTCTGGG--------GAGGCAGAAGAAAGGGCCAGATTTGGGAGCTTGCGGACAGGCTGGTTCCCAAGAC--AGACTCTCCGCCACCTGGAAACAACTTGCCGAGGGCCACAGTGGGCTCCAGGGCACCACTTGGTAC-ACTT--GCTGTGGCCCCTGGCGGTGCTGGGCCT--------------------CCTCTCCCTGGCCCTGCCCTGCCCCAGTCCAGCACTTATTGGGGGAAGATCAGGCACCCTGGTTTGGAGGGGAAGCACC---GAGGCTTT--------GGTGTG------TCTAGAGGGC------AGGGTCACCTGGA-------------AGGGAA-GGGTCTACTCCTTG--------------GGAGTACGGATGGCCACATCTAGTCTTTGCAGGGCACCCCTCCCGGGGCTGGAGGCCACCATCTGGCGGCGTAAACCAGGCA------TTGCAAGTGGACAGACGCCCATGCTCAGGGCATGGTCAGGGTGTGTGTATACACATGCCTGCAGTCTGCTGAGGCGACTGTGCATTTGTGTGTGTTT
i rheMac3.chr1                 I 21 C 0
s macFas5.chr1                 221917687 594 + 227556264 GGGAAAGCT------------GGGTGGGGGTGGTGGGGGTGTGGGCTTCCCAATCATGCCCTGAGGCAGGCCCAGCTCCGGGTTCAGCATGTCCATGTAGCTCTGTATGTCTGCAGCTCTAGCGCTGGAAAGCTCTGGG--------GAGGCAGAAGAAAGGGCCAGATTTGGGAGCTTGCGGACAGGCTGTTCCCCAAGAC--AGACTCTCCGCCACCTGGAAACAACTTGCCGAGAGCCACAGTGGGCTCCAGGGCACCACTTGGTAC-ACTT--GCTGTGGCCCCTGGCGGTGCTGGGCCT--------------------CCTCTCCCTGGCCCTGCCCTGCCCCAGTCCAGCACTTATTGGGGGAAGATCAGGCACCCTGGTTTGGAGGGGAAGCACC---GAGGCTTT--------GGTGTG------TCTAGAGGGC------AGGGTCACCTGGA-------------AGGGAA-GGGTCTACTCCTTG--------------GGAGTACGGATGGCCACATCTAGTCTTTGCAGGGCACCCCTCCCGGGGCTGGAGGCCACCATCTGGCGGCGTAAACCAGGCA------TTGCAAGTGGACAGACACCCATGCTCAGGGCATGGTCAGGGTGTGTGTATACACATGCCTGCAGTCTGCTGAGGCGACTGTGCATTTGTGTGTGTTT
i macFas5.chr1                 M 100 C 0
s papAnu2.chr1                 211068256 588 - 220367699 gggaaagct------------gggtgggggtggtgggggtgtgggCTTCCCGATCATGCCCCGAGG------CAGCTCCGGGTTCAGCATGTCCATGTAGCTCTGTATGTCTGCAGCTCTAGCGCTGGAAAGCTCTGGG--------GAGGCAGAAGAAAGGGCCAGATTTGGGAGCTTGTGGACAGGCTGTTCCCCAAGAC--AGACTCTCTGCCACCTGGAAACAACTTGCCGAGGGCCACAGTGGGCTCCAGGGCACCACTTGGTAC-ACTT--GCTGTGGCCCCTGGCGGTGCTGGGCCT--------------------CCtctccctggccctgccctgccccagtcCAGCACTTACTGGGGGAAGATCAGGCACCCTGGTTTGGAGGGGAAGCACC---GAGGCTTT--------GGTGTG------TCTAGAGGGT------AGGGTCACCTGGA-------------AGGGAA-GGGCCTACTCCTTG--------------GGAGTACGGATGGCCACATCTAGTCTTTGCAGGGCACCCCTCCCGGGGCTGGAGGCCACCATCTGGCGGCGTAAACCAGGCA------TTGCAAGTGGACAGACGCCCATGCTCAGGGCATGGTCAgggtgtgtgtacacacatgcctGCAGTCTGCTGAGGCgactgtgtatttgtgtgtgttt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125298259 591 + 130588469 gggaaagct------------gggtgggggtggtgggggtgtgggCTTCCCGATCATGCCCCGAGGCAGGCCCAGCTCCGGGTT---CATGTCCACGTAGCTCTGTATGTCTGCAGCTCTAGCGCTGGAAAGCTCTGGG--------GAGGCAGAAGAAAGGGCCAGATTTGGGAGCTTTCGGACAGGCTGTTCCCCAAGAC--AGACTCTCCACCACCTGGAAACAACTTGCCGAGGGCCACAGTGGGCTCCAGGGCACCACTTGGTAC-ACTT--GCTGTGGCCCCTGGCGGTGCTGGGCCT--------------------CCTCTCCCTGGCACTGCCCTGCCCCAGTCCAGCACTTACTGGGGGAAGATCAGGCACCCTGGTTTGGAGGGGAAGCACC---GAGGCTTT--------GGTGTG------TCTAGAGGGC------AGGGTCACCTGGA-------------AGGGGA-GGGTCTACTCCTTG--------------GGAGTACGGATGGTCACATCTAGTCTTTGCAGGGCACCCCTCCCGGGGCTGGAGGCCACCATCTAGCGGCGTAAACCAGGCA------TTGCAAGTGGACAGACGCCCATGCTCAGGGCATGGTCAGGGTGTGTGTACGCGCATGCCTGCAGTCTGCTGAGGCGATTGTGCATTTGTGTGTGTTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115000477 593 - 155834243 ggggaagct------------gggtgggggtggtgggggtgtgggtTTGCCAGTCGTGCCCCGAGGCAGACCCAGCTCCGGGTTCAGCATGTCCATGTAGCTCTGTATGTCTGCAGCTCTGGCGCTGGAAAGCCCTGGG--------GAGGCAGGAGGAAGAGCCAGATTTGGGAGCATGCAGCCAGGCTGTCCCCCAAGAC--GGAAAATCTGCCACCTGGAAACAACTTGCTGAGGGACATGGAGGTCTCTGGGGCACCACTTGTTAC-ACCT--GCTGTGGCCCTTGACAGTGCTGGGTTT--------------------CCTCTCTCTTGCCCTGCCCTGCCCCAGCCCAGCACTTACT--TGGAAAACCAGGCACTCTGGTTTGGAGGGGAAGCACT--GGGGGCTTTG-------GGGGTG------TCTAGAGGGC------AGGGCCACCTGGA-------------AGGGTC--GGTGGGCTCCTTG--------------GGAATATGGACTGCCACACCCAATCTTTGCAGGGCACCCCTGTCGGCTCTGCAGGCCACCATCTGTCGGCATGAAGCAGGCA------CTGCAAGTGGACGGACGCCCATGCCCAGGGCGTGGTCAGGGTATGTGTAAACACTTACCCGCCTTCTGCCTAGATGATTGCGTGTCTGTGGATGTTT
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            9112 620 -     13323 AGGGAAGCT------------GGGGGGTGGTGGTGGCGGTATAGGTTTCCCCATCTTGCCCCGAGGCAGGCCCAGCTCGGGGTTCAGCATGTCCATGTAGCTCTGTATGTCTGCAGCTCTTGTGCCAGGAAGCCCTGGG--------GAGGTGGGAGGGAAGGACAGGTGTGGGAGTTTGCAGAGAGGCTGTCCCCCAGGAC--CGACTCTCCACCACCTGGAAGCTACTTGCCAAGGGACAAGGCAGGCTCAAGGGCCCTACTTGGCAA-GCCC--ACTGTGGCTC-TGGCTGTGCCAGCCAT----------------------TTCCCATGGGCCTGCCCTTCCCGAGCCATGCACTT-CTGAGGGAAGGGCAGGCACTCCGGTTTAGAGAGGAAGCACA--GGGAGCTTTGGGCTCCAGGTGTG------TCCAGAGGGC------AGAGTCACCTGGAGGGGAGTGGGTAGAGGGGA-AGGTAGA--TCTGGCAGAGCAGGTGGCAGGAGCATGGATGGCCACACCCAATGTTTGCAAGGCACCCCTGAAAGCTCTGCAGGCCACCACCTGGTGGAATGAAGCAGGCA------TTGCAGGTGGGTAGACACTCATGCTCAGGGCGTGGTCA----CTGTGTACATGCACACTTGGCTTCTGCCTGAGCGCCCGTGCTTTTGTGTAAGTTT
i micMur1.scaffold_20500       I 3 C 0
s mm10.chr4                    152134307 533 + 156508116 CGGGAAGCTtggtggtggtggtggtggaggtggtggcggGGAAGGCTTCCCTAGCTTGCCCCGAGGCAAGCTCTTCTCTGGGTTCAGCATGTCCATGTAGCTCTGTAAGTCTGCAGCTCTTGCACCTGGAATCCCTGGGAGGGGGGTGAGCCAGAAGAA-----CAAATGTTGAAGTCTGCAGAATG-----CACCCCAGAT--CCAAGCTGTCTCAACTGCAAACAGCTTATCCAGCAGCAAGGCAAACT---GGGGCCTGCTTGGTATGGCTT--GCAGTGGCCT----------------------------------------------------------CCCCAGT-AGGCA---------GGAGGGTGATGCTCCCAGGTTTCTAGGGGATACTTT-AGTAGGTTTT--------GGGTTGCTGGGTCCTGTGGAGG------AGGACCACCTGGC-------------AGGGGCTAGGTGGG----TCA--------------GGAGTCTGGGTGGCTGCACTCA----------GGCAGCTCTCTGGGG------------CACCTAGTGGTGGGAAGCAGACACTGCAGCTGCAGGTGGTTGGACTCC--TGTTCAGGGTGTGGTCA----ATGTGTACCCACAGGCCTG-ACTCTGTGGGAAGGCTTTTG---TTATGTGTGTCT
i mm10.chr4                    C 0 I 144
s canFam3.chr5                  28612275 596 -  88915250 AGGGAAACT------------GGGTGGTGGTGGCAGTGGTGTGGTTCTCTCCGTCTTGCCCCGGGGACGGCCCAGTTCCGGGCTCAGCATGTCCATGTAGCTTTGTATATCTGCAGCTCTTGAGCTGGAAAGCCCTGGG--------GAGGGAGG-----------GATTTGGGAGTTTGCAGAGAGGCTGTCCCCCGGGACTGAGACCCCTTTCTACCCGGAAGCAACCAGCCAAAGGGTAAGGTGGGTTTG-GGATGCGGCCAGGTAT-GGCTCCACTGTGGGCTTCAGCAGTGCAGGGcccacctcaccccacctcaccccacccTCCCCTGCCCTGCCCTCCCCTAGCTCTGGGTGCATTGGGGAAAGGACATGCACTCAAGTTTGGAGGGGGACCCCCCAGGGGGCTTTCCACTCC-AGGGTA------TGGAGAGAGCTCCTCTGGTCACACCTAGC-------------AGGGTG-GTGTGG------CA--------------GGAGCATGGACGGCCACCCCCCAAAACCGCAGGGCAC-CCCACCATCTCTGCAGGCCCCTGCCTGGCGGCTTGAAGCAGGTA------TCACAGGTAGATGGACACTCAAGCTCAGGGTGTGGTCAGCGTGTGTATACACACATGCCTGGCTTCTGCCAAG-------------------TGTTT
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I

a score=328118.000000
s hg38.chr1_KI270714v1_random      29351 134 +     41717 GAGTGTGTACGCATTTGT--GCACATGC-----TTCTTTGTATTGATGAATGTGTGTGCATTGCTCTGTGGACATGGT----------GTGTGTGTGTGTGCAT----------ATCTGTAGTATGGAAATAGA--GCATTGT----GTGCTTGTGTGTAAG----GTGGG
s panTro4.chr1_GL389124_random     29503 132 +     50403 gagtgtgtatgcatttgt--gcacatgc-----ttctttgtattgatgaatgtgtgtgcattgctctgtggacatggt----------gtgtgtgtgtg--cat----------atctgtagtatggaaataga--gcattgt----gtgcttgtgtgtaag----gtggg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224069387 129 + 229942017 GAGTGTGTACGCATTTGT--GCACATGC-----TTCTTTGTATTGATGAATGTGTGTGCACTGCTCTGTGGACATGGT-------------TGTGTGTG--CAT----------ATCTGTAGTATGGAAATAGG--GCATtgt----gtgcttgtgtgtaag----gtggg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220035921 135 - 229590362 GAGTGTGTATGCATTTGT--GCACGTGC-----TTCTTTGTACTGATGAATTTGTGTGCATTGCCCTATGGACATGGT-------tgtgtgtgtgtgtg--cat----------atctgtagtatggaaataga--gcattgt----gtgcttgtgtataag----atggg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221918281 135 + 227556264 GAGTGTGTATGCATTTGT--GCACGTGC-----TTCTTTGTACTGATGAATTTGTGTGCATTGCCCTATGGACATGGT-------TGTGTGTGTGTGTG--CAT----------ATCTGTAGTATGGAAATAGA--GCATTGT----GTGCTTGTGTATAAG----ATGGG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211068844 135 - 220367699 gagtgtgtatgcatttgt--gcatgtgc-----ttctttgtactgatgaatttgtgtgcATTGCCCTGTGGacatggt-------tgtgtgtgtgtgtg--cat----------atctgtAGTATGGAAATAGA--GCATTGT----GTGCTTGTGTATAAG----ATGGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125298850 131 + 130588469 GAGTGTGTATGCATTTGT--GCACGTGC-----TTCTTTGTACTGATGAATT--TGTGCATTGCTCTGTGGACATGGT-------TGTGTGTGTGTGTG--CAT----------ATCTGTAGTATGGAAAT--A--GCATTGT----GTGCTTGTGTATAAG----GTGGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115001070  91 - 155834243 GAATGTA-----------------------------------------------TGTGCGTTGCTCTGTGGACACGGT-----------TGTGTGTGTG--TGC----------ATCTGGAGTATGGAAATAGA--GCATCGT----GTGCTTGTGCATAAG----GTGGG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            9732 133 -     13323 GAGCGTGTGCACATTTGT--GCACATGC-----TTCTTTGTATTTATGAACGCGTGTGCATTGGTCTGTGGACATGGT------------GTGTGCGTG--CAT----------TTCTGTTG-ATGGAAATGGA--ACAGCAT----GTGCCTGTGTGTCAGGTAAGTAGG
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28612871 156 -  88915250 GTACATTCACATGTTTGTGAGCACATGCATGGGTTCTTTGTATTTACAAATGTGTTTGCATTGGTCTGTGGACACGGGGTGCATTTCTGCGTGTGTTTA--CATGTGCACAAACATCTGGAGTATGAAAATGGAAGGCTTTGCTGTAGTGCATGTGTG-------------
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152134840 144 + 156508116 I
e gorGor3.chr1                 222986136 1802 - 229507203 I

a score=71805.000000
s hg38.chr1_KI270714v1_random      29485 24 +     41717 TGTGTGCAGATATTAGCCTGGCTC
s panTro4.chr1_GL389124_random     29635 24 +     50403 tgtgtgcagatattagcatggctc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224069516 24 + 229942017 tgtgtgcagatattagcatggctc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220036056 24 - 229590362 tgtgtgcagatattagcatggctc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221918416 24 + 227556264 TGTGTGCAGATATTAGCATGGCTC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211068979 24 - 220367699 TGTGTGCAGATATTAGCATGGCTC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125298981 24 + 130588469 TGTGTGCAGATATTAGCATGGCTC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115001161 23 - 155834243 TATGTGCAGAT-TTTGCACGGCTC
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            9865 24 -     13323 TGTGTGCATATATCTGCATGGCTC
i micMur1.scaffold_20500       C 0 C 0
s mm10.chr4                    152134984 24 + 156508116 cgaactcagaaatccgcctgactc
i mm10.chr4                    I 144 I 9
s canFam3.chr5                  28613027 21 -  88915250 TGCGTGCATCTGCAACCATGC---
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222986136 1802 - 229507203 I

a score=14805.000000
s hg38.chr1_KI270714v1_random      29509 4 +     41717 TGTA
s panTro4.chr1_GL389124_random     29659 4 +     50403 tgta
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222987938 4 - 229507203 tgta
i gorGor3.chr1                 I 1802 I 1038
s ponAbe2.chr1                 224069540 4 + 229942017 tgta
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220036080 4 - 229590362 tgtg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221918440 4 + 227556264 TGTG
i macFas5.chr1                 C 0 C 0
s chlSab2.chr20                125299005 4 + 130588469 TGTG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115001184 4 - 155834243 TTTG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            9889 4 -     13323 TGTA
i micMur1.scaffold_20500       C 0 I 10
s mm10.chr4                    152135017 4 + 156508116 tgtg
i mm10.chr4                    I 9 I 39
s canFam3.chr5                  28613048 4 -  88915250 TGTA
i canFam3.chr5                 C 0 C 0
e papAnu2.chr1                 211069003 0 - 220367699 C

a score=1326592.000000
s hg38.chr1_KI270714v1_random      29513 432 +     41717 --------TGTGTGTTCAT-ATCTGTATGC-TGTGTGTACACATGTACA-------------------------------AGTGTGTG--CTTTTGTGTGTGAGTAGCTAAG-----AATAATG-AATGGTGGGC------------------GGCACACGTGGAT---TTTGTGGGTGGGG----------------AGAGTACATGTGG-----------ATGTACATG--TATGT-----CTGTGATGAGCACAC------------ACAAGTATGAGT---------------------------GACATCTGTCTCTCACCAGAAAG---------GGTGTCGCCTCCCCATGTTTAAA--AGCAAGTGATGAGAGT-AGTCTTC---------GATATTGGCTGTGGCAGG-CTGGCCC-AAGGCCAACCCTCACAGCCCAGCAGTCTGGCTTCAGTCTGCTCTCCCTCC-CCCTCTTCCTCC-TGGGCACACTCACCACGTGGAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCGTAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCAG
s panTro4.chr1_GL389124_random     29663 432 +     50403 --------tgtgtgtTCAT-ATCTGTATGC-TGTATGTACACATGTACA-------------------------------AGTGTGTG--CTTTTGTATGTGAGTAGCTAAG-----AATAATG-AATGGTGGGC------------------GGCACACGTGGAT---TTTGTGGGTGGGG----------------AGAGTACATGTGG-----------ATGTACATG--TATGT-----TTGTGATGAGCACAC------------ACAAATATGAGT---------------------------GACATCTGTCTCTCACCAGAAAG---------GGTGTCGCCTCCCCATGTTTAAA--AGCAAGTGATGAGGGT-AGTGTCT---------GATATTGGCTGTGGCAGG-GCGGCCC-AAGGCCAACCCTCACAGCCCAGCAGTCTGGCTTCAGTCTGCTCTCCCTCC-CCCTCTTCCTCC-TGGGCACACTCACCACATGGAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCGTAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCAG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224069544 432 + 229942017 --------tgtgtgttcat-atctgtatgc-tgtatgtacacatgtaca-------------------------------agtgtgtg--cttttgtgtgtgagtAGCTAAG-----AATAATG-AATGGTGGGC------------------AGCACACGTGGAT---TTTGTGGGTGGGG----------------AGAGTACATGTGG-----------ATGTACATG--TATGT-----TTGTGATGAGCACAC------------ACAAGTATGAGT---------------------------GACATCTGTCTCTCACCAGAAAG---------GGTGTCGCCTCCCCATGTTTAAG--AGCAAGTGATGAGGGT-AGTGTCC---------GATATTGGCTGTGGCAGG-GCGGCCC-AAGGCCAACCCTCACAGCCCAGCAGTCTGGTTTCAGTCTGCTCTCCCTCC-CCGTCTTCCTCC-TGGGCACACTCACCACGTGGAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCGTAGTTGGAGAGGGTGCTGGTAGGTGAGCTGAGGTCAAAGTTCAG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220036084 433 - 229590362 --------tgtgtgttcat-atttgtaggc-tgtatgtacacatgtaca-------------------------------agcgtgtg--cttttgtgtgtgagtAGCTGAG-----AATAATG-AATGGTGGGC------------------GGCACATGTGGAT---TTTGTGTGTGGGG----------------AGAGTACATGTGG-----------ATGTACACC--TGTGT-----TTGTGATGAGCACAC------------ACACGCATGAGT---------------------------GACATCTGTTTCTCAGCAGAAGG---------GGTGTCTCCTCCCCATGTTTAAG--AGCAAGCGATGAGGGT-AGTCTCT---------GACATTGGCTATGGCAGG-GTGGCCC-AAGGCCAACCCTCACAGCCCAGTGGTCTGGCTTCAGTCTGCTCTCCCTCC-CCCTCTTCCTCCTTGGGCACACTCACCGCATGGAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCATAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221918444 433 + 227556264 --------TGTGTGTTCAT-ATTTGTAGGC-TATATGTACACATGTACA-------------------------------AGCGTGTG--CTTTTGTGTGTGAGTAGCTGAG-----AATAATG-AATGGTGGGC------------------GGCACATGTGGAT---TTTGTGTGTGGGG----------------AGAGTACATGTGG-----------ATGTACACC--TGTGT-----TTGTGATGAGCACAC------------ACACGCATGAGT---------------------------GACATCTGTTTCTCAGCAGAAGG---------GGTGTCTCCTCCCCATGTTTAAG--AGCAAGCGATGAGGGT-AGTCTCT---------GACATTGGCTATGGCAGG-GTGGCCC-AAGGCCAACCCTCACAGCCCAGTGGTCTGGCTTCAGTCTGCTCTCCCTCC-CCCTCTTCCTCCTTGGGCACACTCACCGCGTGGAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCATAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211069003 433 - 220367699 --------TGTGTGTTCAT-ATTTGTAGGC-TGTATGTACACATGTACA-------------------------------AGCGTGTG--CTTTTGTGTGTGAGTAGCTGAG-----AATAATG-AATGGTGGGC------------------GGCACACGTGGAT---TTTGTGTGTGGGG----------------AGAGTACATGTGG-----------ATGTACACC--TGTGT-----TTGTGATGAGCACAC------------ACACGCATGAGT---------------------------GACATCTGTTTCTCAGCAGAAGG---------GGTGTCTCCTCCCCATGTTTAAG--AGCAAGCGATGAGGGT-AGTCTCT---------GACATTGGCTGTGGCAGG-GTGGCCC-AAGGCCAACCCTCACAGCCTAGTGGTCTGGCTTCAgtctgctctccctcc-ccctcttcctccttggGCACACTCACCGCGTGGAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCATAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125299009 433 + 130588469 --------TGTGTGTTCAT-ATTTGTAGGC-TGTATGTACACATATACA-------------------------------AGCGTGTG--CTTTTGTGTGTGAGTAGCTGAG-----AATAATG-AATGGTGGGC------------------GGCACACGTGGAT---TTTGTGTGTGGGG----------------AGAGTACATGTGG-----------ATGTACACC--TATGT-----TTGTGATGAGCACAC------------ACACGCATGAGT---------------------------GACATCTGTTTCTCAGCAGAAGG---------GGTGTCTCCTCCCCATGTTTAAG--AGCAAGCGATGAGGGT-AGTCTCT---------GACATTGGCTATGGCAGG-GTGGCCC-AAGGCCAACCCTCACAGCCCAGTGGTCTGGCTTCAGTCTGCTCTCCCTCC-CCCTCTTCCTCCTTGGGCACACTCACCGCGTGCAGGGTGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCATAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115001188 422 - 155834243 --------TGTATGCTCAT-ATCTGCATGT-TGTATG--------TACA-------------------------------AGTGTGCA--CTTTTGTGTGTGAGTAGCTGAG-----AATAATG-AATGGTGGGT------------------GGGACACGTGGAT---TTTGTGGGTGGGG----------------AGAGTACATGTGG-----------ATGTACATG--TATGT-----TTGTGATAAGCACAC------------ATAAGCATGAGT---------------------------GACATCTGTCTCTCACCAGAAGG---------G--GTCTCCTCCCCATGTTTAAG--AGCAGGCAATGGGGGTAAAACTCC---------GATACTGGCTGTGGCAGG--CGGCCC-AAGGCCAGCTCTCATGGCCCAGTAGTCTGGCTTCGGTCTCCCCTCCCTCC-CCCTCTACCTCC-AGGGCACACTCACTGCGAGGAGGGCACTGGCCTTTGATGCTGGAGTGGCTGGAGGAACAGGAGTCGTAGTTGGAGAGGGTGCTGGCCGGTGAGCTGAGGTCAAAGTTCAG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500            9903 421 -     13323 --------TGTGCATTCATGGTCTGTATAT-TGTGTGTACACTTGTACATGTGTGCACTTTTGAGTGTGGATAACTTTTGAGTGTGTGCACTTTTGAGTGTGGATAACTGAG-----AACAATG-AATTGTGCAC----------------AGGGTGCATGTGGAT---TTAGTGGGAGGG------------------GAGTATGTGTAG-----------ACATGCATG--TATGT-----TTGTGATGGGCACAC------------AC------------------------------------------CCGTCTCTCACCGCAAGG---------AGTATCTCCTCCCAGTGTTTAAGACAGCAGGCGATGACGGT-GGCCTCC---------A--------------------GGCTC-AGGG------------GCCCAGTGGTCGGGGTGCAGTCTCTCCTTCCTCC-CCCTTCCCAGCC--CGGCCCACTCACCACGTGGAGGGCGCTGGCCCTTGATGCTCGAGTGGCTGGATGAGCAGGAGTCGTAGTTGGAGAGGGTGCTGGTGGGCGAGCTGAGGTCAAAGTTCGG
i micMur1.scaffold_20500       I 10 M 1868
s mm10.chr4                    152135060 509 + 156508116 --------TGTGTGTCTTT-AACCCTATACTTACTTGTGTCTGTGTTGG-------------------------------ACTGAGTG--ACTTTGGGTGTGGGTGGCCATGTTTGTAATAGGGAAATGGTGGCCTTCTGTTTGTGTAATATAGGTATAAGTGTGCATATTTTTGGCATAAG----------------TGTGTACGTGTGC-----------TTGTGCATGCTTACGT-----GTATACTCTGCACACCTGTCCACATGTGCACCTTTGAGTTTGGTAGCTTAGCACCGAGATCACCGAGTCATGTGTTGGACACATGCAGGCTTTGTGGCAGGGTCTTATTGGGATGGACAAG--TTCAAGTGC-----AT-CCCCTCTCCATGTTAAGACATTGACTGATACAGA-CAGACAG-ACAGATGGACGGAATGGCCC--TGGCTTTGACTCAGT-TCCCCACACTCC-TCCTCCTCCTTC---CATCCACTCACCTCGATTCGATCGCTGCCCCTTGCTGCTGGAGTGACTGGAGGAGCAGGAGTCATAGTTGGAGAACGTGCTAGTAGGCGAGCCCAGGTCAAAGGTCAT
i mm10.chr4                    I 39 C 0
s canFam3.chr5                  28613052 450 -  88915250 TGTGTGGTTGTGAATTCCT-ATCTGTACAC-TGTGCCTACACATGTACA-------------------------------AGTGTGCA--CTTTTGAGTGTGAATAGGTGTG-----TGTAA---AAGTCTGGGT------------------TACAC-----------TGTGTGTGTGAGGATGATTACTCATTTTCAGGGTGCATGTGGATTTTGTCTCTATATGCACA--TAGGCTTGTGTTGTGATGAGCACAC------------ACA-GCACAAGT---------------------------GTCATCTGCCTCTCACCAGAACC---------AGCAGCCCCTCCTGGTGACCTGG----------------GC-AGCCTCT---------AGCGCCAGCCATGGGAAGAGTGTCCCTGATGCTGGCCCTCAGGGACCCATGGCC-AGTCCCAGTCTATGCTCCCCCCTCCCTCTTCCCAGCCTGGCCCACTCACCGCGTGGGGGGCGCTGGCCCTTGATGCTGGAGTGGCTGGAGGAGCAGGAGTCATAGTTGGAGAGGGTGCTGGTGGGTGAGCTGAGGTCAAAGTTCAG
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222987942 1038 - 229507203 I

a score=1632662.000000
s hg38.chr1_KI270714v1_random      29945 604 +     41717 AGGCTGGACCGACACCGTGGTGTTGGGTGAGGACATGCCTGAATCCGGCTGCTTCGCCTCCAGCTCCACGGATGGATCCCGGGAGAGCACGCAGTGCTCCATGCTCTGAAGGGGAGGCAGGGAGGCCATGAAGGCAACTGCACCCCAAGATGCGTTGCTCTCCaggccagggtcctactcaaccatgcctttgccgtgggatcttggccaagccacacccctctctggggtctcttccccatcgctag----------------aGGGTCTTTCAGATTCCT-CCGGGTTAAGATTCAAGCCCAGCCCCGCCAGGCAG-AGGACC-CAGGTTCTTGGGAAACTCCCTCCCCTGGCTCCTCCCTGATTAGG-AGGGTGGAGAGATCG--ACGAGGAGGGGG-CCTTGAGCTGCACCCCAGGGGGAG----------AACTGCCA-------------GGAGATC----GGCCTTCTCCC--------------TCACAGATC----GGCACA----------------GGCTCC------------ATGGGGAAGGGCACAG----------------------------------------------------CACAGGCCCATCCCTAGTGACCTGGCTGGCAAGC--CAGCTCTCCTTGCCAGACCTGGGACCTGGAGCAGACTCCCAACACCAGCCCGGCCT--GTCTCCTGATGGGGCCCTTGGGGTAAGGGTAGGGCCT-GGATGG-CCAGCT
s panTro4.chr1_GL389124_random     30095 606 +     50403 CGGCTGGACCGACACCGTGGTATTGGGTGAGGACATGCCTGAATCCGGCTGCTTCGCCTCCAGCTCCACGGATGGATCCCGGGAAAGCACGCAGTGCTCCATGCTCTGAAGGGGAGGCAGGGAGGCCATGAAGGCAACTGCACCCCAAGATGCGTTGCTCTCCaggccagggtcctactcagccatgccttcgctgtgggatcttggccaagccacacccctctctggggtctcttccccatcgctag----------------agggtctctcaggttcct-ccaggttaagattcAAGCCTAGCCCCACCAGGCAGCAGGACC-CAGGTTCCTGGGAAACTCCCTCCCCTGGCTCCTCCCTGATTAGG-AGGGTGGAGAGATCG--ACAAGGAGGGGGCCCTTGAGCTGCACCCCAAAGGGAG----------AACTGCCA-------------GGAGATC----GGCCTTCTCCC--------------TCACAGATC----AGCAGA----------------GGCTCC------------ATGGGGAGGGGCACAG----------------------------------------------------CACAGGCCCATCCCTAGTTACCTGGCTGGCAAGC--CGGCTCTCCTTGCCGGACCTGGGGCCTGGGGCAGACTCCCAACACCAGCCCGGCCT--GTCCCCTGATGGGGCCCTCGGGGTAAGGGTGGGGCCT-GGATGG-CCAGCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224069976 603 + 229942017 CGGCTGGACCGACACCGTGGTGTTGGGTGAGGACATGCCTGAATCCGGCTGCTTCGCCTCCAGCTCCGCGGATGGATCCCGGGAGAGCACGCGGTGCTCCACGCTCTGAAGGGGCGGCAGGGAGGCCATGAAGGCAACCGCACCCCAAGATGCGTTGCTCTCCaggccagggtcctactcagccatgccttcgctgtgggatcttggccaagccacaccgctctctggggtctcttctccatcactag----------------agggtctctcaggttcct-ccaggttaagattcAAGCCCAGCCCCGCCAGGCAGCAGGACC-CAGGTTCCTGGGAAACTCCCTCCCCTGGCTCCTCCCTGATTAGG-AGGGTGGAGAGATCG--ATGAGGAGGGGG-CCTTGAGCTGCACCCCAAGGGGAG----------AACTGCCA-------------GGAGATC----GGCCTTCTCCC--------------TCACGGATC----GGCAGA----------------GGCTCC------------ATGGGGAGGGGCACAG----------------------------------------------------CACAGGCCCATCCCTAGTTACCTGGCTGGCAAGC--CGGCTCTCCTTGCCGGACCTGGGGCCTGGGGCAGACTCCCAACACCAGCCCGGCC----TCTCCTGATGGGGCCCTTGGGGTAAGGGTGGGGCCT-GGATGG-CCAGCT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220036517 602 - 229590362 TGGCTGGACTGACACCGTGGTGTTGGGTGAGGACATGCCTGAATCCAGCTGCTTCGCCTCCAGCTCTGCGGATGGATCCCGGGAGAGCACGCGGTGCTCCACACTCTGAAGGGGAGGCAGAGAAGCCATGAAGGCAAGTGCTCCCCAAGATGTGTTGCTCTCCAGGCTAGGgtcccactcagccacgccttcactgtgggatctcggtcaagccacacccctctccggggtctcttctgcatcactgg----------------agggtctctcaggttcct-ccaagttAAGATTCAAGCCCAGCCCCGCCAGGCAGCAGGACC-CAGGTTCCTGGGAAACTCCCTCGCCTGGCTCCTCCCTGATTAGG-AGGGTGGAGAGATCG--ACGAGGAAGGGG-CCTTGAGCTGCACCCCAAGGGGAG----------AACTGCCA-------------GGAGATC----GGCCTTCTCCC--------------TTAAGGAT-------CAGA----------------GGCTCC------------ATGGGGAGGCGCACAG----------------------------------------------------CACAGGCCCATCCCTAGTTATCCGGCTGACAAGC--TAGCGCTCCTTGCCGGACCTGGGACTTGGGGCAGACTCCCAACACCAGCCCGGCCT--ATCTCCTGATGGGGCCCTTGGGGTAAGAGTGGGGCCT-GGGTAG-CCAGCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221918877 602 + 227556264 TGGCTGGACTGACACTGTGGTGTTGGGTGAGGACATGCCTGAATCCAGCTGCTTCGCCTCCAGCTCTGCGGATGGATCCCGGGAGAGCACGCGGTGCTCCACACTCTGAAGGGGAGGCAGGGAAGCCATGAAGGCAAGTGCTCCCCAAGATGTGTTGCTCTCCAGGCTAGGGTCCCACTCAGCCACGCCTTCACTGTGGGATCTCGGTCAAGCCACACCCCTCTCCGGGGTCTCTTCTGCATCACTGG----------------AGGGTCTCTCAGGTTCCT-CCAAGTTAAGATTCAAGCCCAGCCCCGCCAGGCAGCAGGACC-CAGGTTCCTGGGAAACTCCCTCGCCTGGCTCCTCCCTGATTAGG-AAGGTGGAGAGATCG--ACGAGGAAGGGG-CCTTGAGCTGCACCCCAAGGGGAG----------AACTGCCA-------------GGAGATC----GGCCTTCTCCC--------------TTAAGGAT-------CAGA----------------GGCTCC------------ATGGGGAGGCGCACAG----------------------------------------------------CACAGGCCCATCCCTAGTTATCCGGCTGACAAGC--TAGCGCTCCTTGCCGGACCTGGGACTTGGGGCAGACTCCCAACACCAGCCCGGCCT--ATCTCCTGATGGGGCCCTTGGGGTAAGAGTGGGGCCT-GGGTAG-CCAGCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211069436 602 - 220367699 TGGCTGGACTGACACCGTGGTGTTGGGTGAGGACATGCCTGAATCCAGCTGCTTCGCCTCCAGCTCTGCGGATGGATCCCGGGAGAGCACGCGGTGCTCCACGCTCTGAAGGGGAGGTAGGGAAGCCATGAAGGCAAGTGCTCCCCAAGATGTGTTGCTCTCCAGGCTAGGGTCCCACTCAGCCATGCCTTCACTGTGGGATCTCGGTCAAGCCACACCCCTCTCCGGGGTCTCTTCTGCATCACTGG----------------AGGGTCTCTCAGGTTCCT-CCAAGTTAAGATTCAAGCCCAGCCCCGCCAGGCAGCAGGACC-CAGGTTCCTGGGAAACTCCCTCGCCTGGCTCCTCCCTGATTAGG-AGGGTGGAGAGATTG--ACGAGGAAGGGG-CCTTGAGCTGCACCCCAAGGGGAG----------AACTGCCA-------------GGAGATC----GGCCTTCTCCC--------------TTAAGGAT-------CAGA----------------GGCTCC------------ATGGGGAGGCGCACAG----------------------------------------------------CACAGGCCCATCCCTAGTTATCCGGCTGGCAAGC--TAGCGCTCCTTGCCGGACCTGGGACCTGGGGCAGACTCCCAACACCAGCCCGGCCT--ATCTCCTGATGGGGCCCTTGGGGTAAGGGTGGGGCCT-GGGTAG-CCAGCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125299442 602 + 130588469 CGGCTGGACTGACACCGTGGTGTTGGGTGAGGACATGCCTGAATCCAGCTGCTTCGCCTCCAGCTCTGCGGATGGACCCCGGGAGAGCACGCGGTGCTCCACGCTCTGAAGGGGAGGCAGGGAAGCCATGAAGGCAAGTGCACCCCAAGATGCGTTGCTCTCCAGGCTAGGGTCCCACTCAGCCACGCCTTCACTGTGGGATCTCGGTCAAGCCACACCCCTCTCCGGGGTCTCTTCTGCATCACTGG----------------AGGGTCTCTCAGGTTCCT-CCAAGTTAAGATTCAAGCCCAGCCCCGCCAGGCAGCAGGACC-CAGGTTCCTGGGAAACTGCCTCGCCTGGCTCCTCCCTGATTAGG-AGGGTGGAGAGATCG--ACGAGGAGGGGG-CCTTGAGCTGCACCCCAAGGGGAG----------AACTGCCG-------------GGAGATC----GGCCTTCTCCC--------------TTAAGGAT-------CAGA----------------GGCTCC------------ATGGGGAGGCACACAG----------------------------------------------------CACAGGCCCATCCCTAGTTATCTGGCTGGCAAGC--TAGTGCTCCTTGCCGGACCTGGGACCTGGGGCAGACTCCCAACACCAGCCCGGCCT--GTCTCCTGATGGGGCCCTTGGGGTAAGGGTGGGGCCT-GGGTAG-CCAGCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115001610 650 - 155834243 CGGCTGGACCGACACGGTGGTGTTGGGTGAGGACATGCCTGAGTCCAGCTGCTTCACCTCCAGCTCAGCAGAGGGATCCCGGGACAGCACACGGTGCTCCACGCTCTGAAGGGGAGGCAGGGAGGCCATGAGGGCCAGTGCACCCCAAGACAGGTCGCCCtccaggccaaggtcaccctcagccatgcctttgctgtgggatcttggccaagccacacctctctccagggccccttccccatcACTAGTCCCTTCCCCATCACTAGTGGGTCTCAGCTTCCT-CCAGGTTAAGATTTGAGCCCAGCCCCGCCAGGCAGCAGGA-C-CGGGTTCCTGGGAAACTCCCTCTGCTGGCTCCTCCCTGATTAGG-AGAGTGGAGAGATTG--ATGAGGAGGGGG-CCTTGGGCTGCACCCCAAGGGGAG----------AACTGCCA-------------GGAGATT----GGCCTTCTGTCCACAATCAGCAGATTGGCAGATG----GGCAGAGGGCCTTGGCTCCAATGGTTCT------------GTGGGGAGGGGCACAG----------------------------------------------------CACAGGCCCACCTCCACTTACCTGGCTACCAAGC--TGGCTCTCCTGGCCCAACCTGGGACCTGGGGCAGACTCCTAACACCAGACCGGCCT--GTCTCCTAATGGAGCCCTTAGGGTAGGGGTGGGGCCT-GGATGG-TCAGCT
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152135569 593 + 156508116 TGGCTGGACCGACATGGTGGTGTTGGGCGAGGACATACCCGAGTCCAGCTGCTTTGCCTCCAGGTCCATGGATTGATCCCGGGACAAGACTCGGTGTTCCAAGCTCTGAGGGAAAAGGAGGGAAGTTTTGGGCTCCAGCGTCCTGTGGG----GATAACTTCCAGGCCAGG--CCTATCCAGACTCCTATTCA-----GAGTCCTCCCTGAGCAAC------CAGCTGAGGCACTTCCTGACTTCTGC----------------ACCATTTC-CACTTCTTC-CTAGGTCAGGAGTCAAGAGCAGACACTTCCACTTGCA--CTT-CAGGCCTCAGAGAAATGCC--CAGCTGGCTCTCCCC---------AGGCTCAAGACACTT--GTGAAGGAGGGT-C--TGGCCTGCACCCCAAAGGGATGCAGCCCTGCACCTGTCACTCCCCTCTAATCAGAGGGCAGAAGGCTTTGTCTC--------------CTATGCATCTGTGGGCAAA----------------GGACCCTAGGGCTGTCTACTGGAGGAGGAGGAAG----------------------------------------------------GATACATTTAACTTCCATTGCCTGGCTG-CAACC--TAA-----CTTGCTTGAGCT----------GCCAGCTGCCTACCCAATGCCAGTGC--ACCTCCTGATGGTG-CTGCGGGGAAAGGCTGGGCCCT-AGATGG-------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28613502 660 -  88915250 TGGCTGGACCGACATGGTGGTATTGGGTGAAGACATGCCAGAGTCAGGCTGCTTGGTCTCCAGCTCCGCAGATGGATCCCGGGACAGAACACGGTGCTCCACACTCTGAGCAGGAG---GGGAGGCGACGAGGACAGCCTGACCTGAAGAC-CGGTGCTCTCCaggccagggtcctgctcaggcatgtctttgctgtgtgacctaggctgagccgcttctttttctgggctttc-tccccattctgag----------------aatgTCTCTCAGGTTCTTCCCAGGCCAAGATTCAAGCCCAGCCCC--CTGGCAGCAGGACCACAGGTTCCTGGGAAACTCC-TACCCTGGCCACACCTTGCTCAGGTGGGGTGGAGAGACTGTCAGAAGGGGGGGG-CCAT---CTGGACCCCAAGGGGAA----------GACTGCCA-------------TGGCACC----AGCCTTCTCCT--------------TC-CTCAT-------CAGAGAGACTGAGCTCCACTGTATCT------------GTGGTGAGGGGCTCAGGTGCCACAGCCACTGGGGGTAGGGGAGGATGCAGGGACCCCATAGCTTACATGAAAGACTAATTCTCCACTACCTGGCCAGTAGCCCTTGTGCCTCCATGCCCTAC--------TGGGGCAGATT-CCAACCCCAGCCCAGCCCCACTCTCCTGATGGGGCCCTTGGAGAAAGGGAGGGGCTTAGGGTGGCCCAGCT
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222987942 1038 - 229507203 I

a score=8595.000000
s hg38.chr1_KI270714v1_random      30549 2 +     41717 GA
s panTro4.chr1_GL389124_random     30701 2 +     50403 GA
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222988980 2 - 229507203 GA
i gorGor3.chr1                 I 1038 I 3804
s ponAbe2.chr1                 224070579 2 + 229942017 GA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220037119 2 - 229590362 GA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221919479 2 + 227556264 GA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211070038 2 - 220367699 GA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125300044 2 + 130588469 GA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115002260 2 - 155834243 GA
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28614162 2 -  88915250 GA
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152136162 0 + 156508116 C
e micMur1.scaffold_20500           10324 1868 -     13323 M

a score=2051463.000000
s hg38.chr1_KI270714v1_random      30551 705 +     41717 GCAGTGATGGGCAGCCAGAGCTCAGGCTGCCAGGCTTGCCATT-CCCCCGCCCTGCCCGGTCTGTGCGTCTGACCACAGGCCTGTCCCCTCCCGGTGCAGAGG-GGGCTGTGGTAGGGGCCCTGCTTACATTGCCCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTGCCCAGGCCTGCTCCTCCTTGCCCCGTGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCACCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCAGCGGCCGTGCTCATTGGCCCCGTAATTAGGGGCTCTGCTGGAGTGTTTGCCTTTTCTGGGCCAGCGTCTTCTGTGGCTTGGGTCTGTCCCTGCCTCAGCTGGGCCTGCTTGAGTGAGGGGACCAGGGCACA---CACACCCCACCCATTCCAGGGGA-CCAGGCCCTGCTACCTACCGCAGGAGTCA-GGGGAGCCATAGGAGGTGGCGT---GGGCAGC-------------------------------ACCCAAAGGTGCTCTTTACCTGGGCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGCAGATAAGAGGCT-GGGCCTCAGCAGGTGTACTGCGCCTGGCCTGAGCCACCCAG-ctctgcagtctgggactgtggcttcaaacttcccctccccgacttacta-gct-----atttcgggtgagtcacctgtgctttttgtgcctaa
s panTro4.chr1_GL389124_random     30703 704 +     50403 GCAGTGATGGGCAGCCAGAACTCAGGCTGCCAGGCCTGCCATC-CCCCCGCCCTGCCCGGTCTGTGCGTCTGACCACAGGCCTGTCCCCTCCCGGTGCAGAGG-GGGCTGTGGTGGGGGCCCTGCTTACATTG-CCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTGCCCAGGCCTGCTCCTCCTTGCCCCATGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCCCTCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCAGCGGCCGCGCTCATTGGCCCCGTAATTAGGGGCTCTGTGGGAGTGTTTGCCTTTTCTGGGCCAGCGTCTTCTGTGGCTTGGGTCTGTCCCTGCCTCAGCTGGGCCTGCTTGAGTGAGGGGACCAGGGCACA---CACACCCCACCCATTCCAGGGGA-CCAGGCCCCGCTACCTACCGCAGGAGTCA-GGGGAGCCATAGGAGGTGGCGT---GGGCAGC-------------------------------ACCCAAAGGTGCTCTTTACCTGGGCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGCAGATAAGAGGCT-GGGCCACAGCAGGTGTACTGCGCCTGGCCTGAGCCACCCAG-ctctgcagtctaggactgtggcttcaaacttcccctccccgacttacta-gct-----atttcgggtgagtcacctgtgctttttgtgcctaa
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224070581 705 + 229942017 GCAGTGATGGGCAGCCAGAGCTCAGGCTGCCAGGCCTGCCACT-CCCCCGCCCTGCCCGGTCTGTGCGTCTGACCACAGGCCTGTCCCCTCCCAGTGCAGAGG-GGGCTGTGGTGGGGGCCCTGCTTACATTGCCCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTGCCCAGGCCTGCTCCTCCTTGCCCCGTGCCCCCTCCCTGCCTAGGAAGTGTCACAGGCCCCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCAGCGGCCGCGCTCATTGGCCCCGTAATTAGGGGCTCTGCAGGAGTGTTTGCCTTTTCTGGGCCAGCGTCTTCTGTGGCTTGGATCTGTCCCTGCTGCAGCTGGGCCTGCTTGGGTGAGGGGACCAGGGCACA---CACACCCCACCCATTTCAGGGCA-CCAGGCCCTGCTGCCTACCGCAGGAGTCA-GGGGAGCCATAGGAGGTGGCGT---GGGCAGC-------------------------------ACCCGAAGGTGCTCTTTACCTGGCCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGCAGATAAGAGGCT-GGGCCACAGCAGGTGTACTGCACCTGGCCTGAGCCACCCAG-ctctgcagtctgggacagtggcttcagacttcccctccctgacttacta-gct-----atttcaggcgagtcacctacgctttttgtgcctaa
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220037121 711 - 229590362 GCAGTGATGGGCAGCCAGAGCTCAGGCTGCCAGGCCTGCCATT-CCCCCGCCCTGCCGGGTCTGTGCCTCTGACCACAGGCCTGTCCCCTCCCGGTGCAGAGG-GGGATGGGGTGGGGGCCCTGCTTACATTGCCCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTACCCAGGCGTACTCCTCCTTGCTCCGTGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCCCCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCGGCGGCTGCGCTCATTGGCCCCGTAATTAGGGGCTCTGTGGGAGTGTTTGCCTTTTCTGGGCCAGCATCTTCTGTGGCTTGGATCTGTCACTGCCGAAGCTGGGCCTGCTTGGGTGAGAGAACCAGGGCACAC--CCCCCCCCACCCATTCCAGGGGA-CCAGGCCCAGCTGCCTACCCCAGGAGTCA-GGGGAGCTATAGGAGGTGGCTT---GGGCAGC-------------------------------ACCCAAAGGCGCTCTTTACCTGGCCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGCAGATAAGAGGCT-GAGCCACAGCAGGTGTACTGCATCTGCCCTGAGTCACCCAG-CTCtgcagtctgggacagtggcttcaaacttcccctcccctacttacta-gctgtgtcattttgggtgagtcacctatgctttttgtgcctaa
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221919481 710 + 227556264 GCAGTGATGGGCAGCCAGAACTCAGGCTGCCAGGCCTGCCATT-CCCCCGCCCTGCCGGGTCTGTGCCTCTGACCACAGGCCTGTCCCCTCCCGGTGCAGAGG-GGGATGGGGTGGGGGCCCTGCTTACATTGCCCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTACCCAGGCGTACTCCTCCTTGCTCCGTGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCCCCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCGGCGGCTGCGCTCATTGGCCCCGTAATTAGGGGCTCTGTGGGAGTGTTTGCCTTTTCTGGGCCAGCATCTTCTGTGGCTTGGATCTGTCACTGCCGAAGCTGGGCCTGCTTGGGTGAGAGAACCAGGGCACA---CACCCCCCACCCATTCCAGGGGA-CCAGGCCCAGCTGCCTACCCCAGGAGTCA-GGGGAGCTATAGGAGGTGGCTT---GGGCAGC-------------------------------ACCCAAAGGCGCTCTTTACCTGGCCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGCAGATAAGAGGCT-GAGCCACAGCAGGTGTACTGCATCTGCCCTGAGTCACCCAG-CTCtgcagtctgggacagtggcttcaaacttcccctcccctacttacta-gctgtgtcattttgggtgagtcacctatgctttttgtgcctaa
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211070040 700 - 220367699 GCAGTGATGGGCAGCCAGAGCTCAGGCTGCCAGGCCTGCCATT-CCCCCGCCCTGCTGGGTCTGTGCCTCTGACCACAGGCCTGTCCCTTCCCGGTGCAgagg-gggatggggt-ggggcccTGCTTACATTGCCCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTACCCAGGCGTACTCCTCCTTGCCCCGTGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCCCCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCGGCGGCTGCGCTCATTGGCCCCGTAATTAGGGGCTCTGTGGGAGTGTTTGCCTTTTCTGGGCCAGCATCTTCTGTGGCTTGGATCTGTCACTGCTGAA---------GCTTGGGTGAGAGAACCAGGGCACA---CACCCCCCACCCATTCCAGGGGA-CCAGGCCCAGCTGCCTACCCCAGGAGTCA-GGGGAGCTATAGGAGGTGGCTT---GGGCAGC-------------------------------ACCCAAAGGTGCTCTTTACCTGGCCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGCAGATAAGAGGCT-GAGCCACAGCAGGTGTACTGCATCTGCCCTGAGTCACCCAG-CTCTGCAGTCTGGGACAGTGGCTTCAAACTTCCCCTCccccacttacta-gctgtgtcaTTTCGGGTGAGTCACCTGTGCTTTTTGTGCctaa
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125300046 710 + 130588469 GCAGTGATGGGCAGCCAGAGCTCAGGCTGCCAGGCCTGCCATT-CCCCCGCCCTGCCGGGTCTGTGCCTCTGACCACAGGCCTGTCCCCTCCCGGTGCAGAGG-GGGATGGGGTGGGGGCCCTGCTTACGTTGCCCATGCTGCCCCTGCTGCCGGCAAGCCCGCT-----TGCT--------CCGCT-----GCCTCCTACCCAGGCGTACTCCTCCTTGCCCCGTGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCCCCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACGGCTCGGCGGCTGCGCTCATTGGCCCCGTAATTAGGGGCTCTGCGGGAGTGTTTGCCTTTTCTGGGCCAGCATCTTCTGTGGCTTGGATCTGTCACTGCCGAAGCTGGGCCTGCTTGGGTGAGAGAACCAGGGCACA---CACCCCCCACCCATTCCAGGGGA-CCAGGCCCAGCTGCCTACCCCAGGAGTCA-GGGGAGCTATAGGAGGTGGCTT---GGGCAGC-------------------------------ACCCAAAGGTGCTCTTTACCTGGCCAACAGCAGTGGGTGCTGAGGGCACCAAGCCCTGACCCCTGTAGGCAGcagataagaggct-gagtcacagcaggtgtactgcatctgccctgagtcacccag-cTCtgcagtctgggacagtggcttcaaacttcccctcccccacttacta-gctgtgtcatttagggtgagtcacctatgctttttgtgcctaa
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115002262 622 - 155834243 TTGGGGATGGGCAGGC--------------------TGCCATTACCCTCGCCCCACCCGGTCTATGCGTCTAACCACAGGCCTGTCCCCTCCCGGTGCAGAGG-GGGCGGGGGTGGGGGTCCTGCTTACATTGCCCATGCTGCCCCAGCTGCCGACAAGCCTGCT-----TGCT--------CCGCT-----GCCTCCTGCCCAGGCCTGCGCCTCCTTGCCCCGTGCCCCCTCCCTGCCTAAGAAGTGTCACAGGCCCCCTGGGAGAGAGAGGCAGGCCTGGCACCAGGTAACAGCTCGGCGGCCACGCTCATTGGCCCTGTAATTAGGGGCTCTGCGGGAGTGTTTGCCTTTTCTGGGCCAGCATCTTCCGTGGCTTGGATCTGTCACTGCCGCAGCTGGGCCTGCTTGGGTG------------------------------------AGGGGA-CCAGGCCCTGCTGCCTACTCCAGGAGTCAGGGGGAGCCACAGAAGGTGGCTT---GGGAAGC-------------------------------ACCCAAAGGTGCTTTTTACCTGGCCAACAGCAATAGGTGCAGAGGGTACCCAGCCCTGACCCCCATGGGCAGCAGATAAGAGGCT-GGGAT-------------------------------TCCAG-ctctgcagcctgggacagtggcttcaaacttcccctccctcacttacta-gctgtgtcatcccgg----gtcacctacgc--attgtgcctaa
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152136162 684 + 156508116 -----GATGTGCCT-----GCTGAGGCTGCCAGGTCTTTCATC-CTCCCTCCC--ACCAGTC-GGGCCTCTGAGTGTAGGCCTG-CCTCTCCTGCTG-GGAGC-AGGTCAGGGTGAGGGGCC-ACTTACATTGCCCATGCTGTCCCTGCTACCGGCAAGCCTGCTCCTCCTCCT--------CCTCTCTATAGCCTCCTGCCCACAGCTACTCCTCCCTGCCCCTTG-CCCCTCCCTGCCTGAGAAGTGTCACAGGCCCCCTGGGAGAGGGAAGCAGG-CTGGCACCAGGTAACGGCTCAGCAGCCATGCTTATTGGCTCTGTAATT--------------AGTGTTTGCCTTTTCTGGGCCAGCTACCTTGGTGGCTTGGATCTGTCATTGCTGCTGCTGAGCCTGCCTGGGTGAGGGGGCCAGATCCTGCTGCCTATCCCATTCACTTCAAGGACTCCAGGCCCTGTTGTCTACCCT-GTAGGAA-AGGGAGCCCCAGAAGATGACTTTGGGGGGGGCTGGAAGAGTGGGGGCGGGGGGGAGAGAGACAACCTGCAGTTGCTCTTTTCTTGATTGGCACTAGGGGGCAGCACTGGGACTCTGCCCTGACTTCTGTAGCCTAT-----GGAAGCt-ggaacacaggg-------------------------cacagactttggatcctggaataataccttta------ctttcccatccttactgtgctatgagattatga-------accagtatcttctgcgcctga
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28614164 679 -  88915250 -GTCTGGTGGGCAGTCCTAGGTCAGGCCG-TAAGCCTGCTGTC-CCCCCACCA----CTGTCTGTGCCCCTGCCCACAGGCCTG-ACCCTCCTGGCATGGGGGTGGGCTGGGGTAGGGGTCCTGCTTACGTTGCCCATGCTGGCCTTGCTGCTGGCAAGCCTGCT-----CGCTGGCTCTGGTGGCT-----GCCTCCTGCCCAAGCCTGCTTCTCCCTGCCCGCGGCCCTCTCCTTGCCTGAGAAGTGTCACAGGCCCCTCGGGAGTGGGAGGCAAGCCTAGCACCAGGTAACAGCTCAGCAGTCATGCTCATTGGCCCTGTAATTAGGGGCTCTGTGGGAGTGTTTGCCTTTTCTGGGGCAGCAACCTGCATGGTTTAGGTCTGTCACTGCTGCAGCTGGGCCTGTCTGGGTGAGGGGACCAAGGCCCCC--CCTACCCCACCTAGTTCAGGGGGGCCAGGGCCAGCTGACCATACCGTGAGCCAAGGGAAAGCATAGGGGCTGGCCT---GGGTGGA------------------------------GGTGGGAAAATGCTCTTTTTGTGGCTGACAGCA-TGGGCACTGGGGGTGCCCAGCCCCAACCCC-ATGGATAac-----agaggttaggggcacagc--------------------------------ctctccagcctggaatgctggcttcaaatgtcacctctcccacttacta-gctaagcgaccttgggcaaatcacttatcctttctgtacttaa
i canFam3.chr5                 C 0 I 329
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=81460.000000
s hg38.chr1_KI270714v1_random      31256 29 +     41717 gtttctttatctgcaaatgggggtaacag
s panTro4.chr1_GL389124_random     31407 29 +     50403 gtttctttatctgcaaatgggggtaacag
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224071286 29 + 229942017 gtttctttatctgcaaatggggataacag
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220037832 29 - 229590362 gtttcttcatctgcaaatggtgataacag
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221920191 29 + 227556264 gtttcttcatctgcaaatggtgataacag
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211070740 29 - 220367699 gtttcttcatctgcaaatggGGATAACAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125300756 29 + 130588469 gtttcttcatctgcaaatggggataacag
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115002884 29 - 155834243 gtttctttatctgcaaatggggataaggg
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152136846 29 + 156508116 attgcttcatctgtaagtaggagtaacag
i mm10.chr4                    C 0 I 214
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=169617.000000
s hg38.chr1_KI270714v1_random      31285  99 +     41717 cactacttgctctgctgagctccaggacatggcgcccagtaaatgccatactgtCAAAtt-------------------------------tttttcttttcttttttttagacggagttttgttcttgt
s panTro4.chr1_GL389124_random     31436  91 +     50403 cactacttgctctgctgagctccaggACATGGCGCCCAGTAAATGCCATACTGTC--Att-------------------------------ttttt------ttttttttagacggagtttcgttcttgt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224071315  93 + 229942017 cactacttgctctgctgagctccaggacatggcgtccagtaaatgccatattgtCAACtt-------------------------------ttttt------ttttttttaaacagagtttcattcttcc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220037861  88 - 229590362 cactacttgccctgctgagctccaggACATGGCACCCAGTAAATGACATATAGTCAACTA------------------------------------------ttttttttagatggagtttcattcttgt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221920220  88 + 227556264 cactacttgccctgctgagctccaggACATGGCACCCAGTAAATGACATATAGTCAACTA------------------------------------------ttttttttagatggagtttcattcttgt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211070769  88 - 220367699 CACTACTTGCCCTGCTGAGCTCCAGGACATGGCACCCAGTAAATGACATATAGTCAActa------------------------------------------ttttttttagacggagtttcattcttgt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125300785  88 + 130588469 cactacttgccctgctgagctccaggACATGGCACCCAGTAAATGACATATAGTCAACTA------------------------------------------ttttttttagacggagtttcattcttgt
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115002913 129 - 155834243 cactaccagtcctgctgaact-caGGACATGGCACCCAGTACACGCCATATTGTCAAatatatatatatatatatatatttttttttttttttttttttttttttttttgaaacagaatctcattcttgt
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=2300.000000
s hg38.chr1_KI270714v1_random      31384 1 +     41717 t
s panTro4.chr1_GL389124_random     31527 1 +     50403 t
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224071408 1 + 229942017 c
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220037949 1 - 229590362 t
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221920308 1 + 227556264 t
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211070857 1 - 220367699 t
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125300873 1 + 130588469 t
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01068755v1       547 1 -       548 T
i nasLar1.chrUn_JMHX01068755v1 N 0 N 0
s calJac3.chr7                 115003042 1 - 155834243 t
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=583910.000000
s hg38.chr1_KI270714v1_random      31385 272 +     41717 gcccaggctggagtacagtggcatggtcttggctcagtgcaacctccacctcctgagttcaagcaattctcctgcctcagcctcccaagtagttggaattaaaggcacccgccaccacacccagctaatttttgtatatttagtagagatggggtttcatcatgatgaccaggctggtctcgaac-cctgacttcaggtgatccac---ccgcctcagcttctcaaagtg---------cacgcatgagccaccacacccggccTGTCAACt-------t-----ttttattttatt
s panTro4.chr1_GL389124_random     31528 277 +     50403 gcccaggctggagtacagtggcgcggtcttggctcagtgcaacctccacctcctgagttcaagcaattctcctgcctcagcctcccaagtagttggaattaaaggcacccgccaccacacccagctaatttttgtatttttagtagagatggggtttcatcatgttgaccaggctggtctcgaac-tctgacttcaggtgatccac---ccgcctcagcttctcaaagtg---------caggcatgagccaccacacccggccTGTCAACt-------ttttaatttaattttatg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224071409 271 + 229942017 gcccaggctggagtgcagtggtgcggtctcggctcactgcagcctccacctcctgggttcaagcaattcttctgcctcagcctcccaagtagttggaattacaggcacccgccaccacacccagctaatttttgtatttttagtagagatggggtttcatcatgttgaccaggctggtctcgaac-cctgacttcaggtgatccacccaccgcctcagtttcccaaagtg---------caggcatgagccaccacacctggccTGTCAACt-------t-----tttttttt----
i ponAbe2.chr1                 C 0 I 297
s rheMac3.chr1                 220037950 263 - 229590362 gcccaggctggagtgtggtggtgcggtctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctaagtagttggaattacaggtgcccaccaccacacccagctaatttttgtatttttagtagagatggggtttcatcatgttgaccaggctggcctcgaac-cctgacctcaggtgatccac---ccacctcagcttcctaaagtg---------caggcatgagccaccatgcctggccTGTCAACt-------t-----ttt---------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221920309 263 + 227556264 gcccaggctggagtgtggtggtgcggtctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctaagtagttggaattacaggtgcccaccaccacacccagctaatttttgtatttttagtagagatggggtttcatcatgttgaccaggctggcctcgaac-cctgacctcaggtgatccac---ccacctcagcttcctaaagtg---------caggcatgagccaccatgcctggccTGTCAACt-------t-----ttt---------
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211070858 262 - 220367699 gcccaggctggagtgtggtggtgcggtctcagctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctaagtagttggaattacaggtgcccaccaccacacccagctaatttttgtatttttagtagagatggggtttcatcatgttgaccaggctggcctcgaac-cctgacctcaggtgatccac---ccacctcagcttcctaaagtg---------caggcatgagccaccatgcctggcctgtcaac--------t-----ttt---------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125300874 263 + 130588469 gcccaggctggagtgtggtggtgcggtctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctaagtagttggaattacaagtgcccaccaccacacccagctaatttttgtatttttagtagagatggggtttcatcatgttgaccaggctggcctcgaac-cctgacctcaggtgatccac---ccacctcagcttcccaaagtg---------caggcatgagccaccatgcctggccTGTCAACt-------t-----ttt---------
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003043 279 - 155834243 gcccagactggatttcgggggggcaatctcggctcactgcaa-ctccacctcctgggttcaagcgattttcctgcctcaacctcccgaataattgggattaaagacggtcaccaccacgcccagctaatttttgtacatttagtagagatggggtttcatcatgttggccaggctggtctcaagctcctgacctcaggtgatccat---cagccttggcctcccaaagtgcaggtattacaggcatgagccactgtgcccggccTGTCAACTAttattat-----tat---------
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=106422.000000
s hg38.chr1_KI270714v1_random      31657 62 +     41717 ttattttatttttagacagagtcttgctct--gtcaccaggctggagtgcagtggcgcggtctt
s panTro4.chr1_GL389124_random     31805 62 +     50403 ttattttatttttagacggagtcttgctct--gtcaccaggctggagtgcagtggcacggtctt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224071977 62 + 229942017 tttttttttttttagacggagttttgctct--gtcaccaggctggagtgcagtggcgtgatctt
i ponAbe2.chr1                 I 297 C 0
s rheMac3.chr1                 220038213 54 - 229590362 --------ttttgagatggaatcttgctct--gtcaccaggctggagtgcagtggcgcaatctc
i rheMac3.chr1                 C 0 I 75
s macFas5.chr1                 221920572 54 + 227556264 --------ttttgagatggaatcttgctct--gtcaccaggctggagtgcagtggcgcaatctt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211071120 54 - 220367699 --------ttttgagatggaatcttgctct--gtcaccaggctggagtgcagtggccgaatctc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125301137 54 + 130588469 --------ttttgagatggaatcttgctct--gtcaccaggctggagtgcagtggcgcaatctt
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003322 61 - 155834243 ---tttttttttttgagagagttttgctcttgttgttcaggctggagcacaatggcatgatctt
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=21727.000000
s hg38.chr1_KI270714v1_random      31719 14 +     41717 ggcttactgcaacc
s panTro4.chr1_GL389124_random     31867 14 +     50403 ggcttaccgcaacc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072039 14 + 229942017 ggcttactgcaacc
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221920626 14 + 227556264 ggctcacagcaacc
i macFas5.chr1                 C 0 M 4547
s papAnu2.chr1                 211071174 14 - 220367699 ggctcacagcaagc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125301191 14 + 130588469 ggctcacagcaacc
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003383 14 - 155834243 ggctcaccacaacc
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e rheMac3.chr1                 220038267 75 - 229590362 I
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=24333.000000
s hg38.chr1_KI270714v1_random      31733 22 +     41717 tccgcctcctgggttcaagcaa
s panTro4.chr1_GL389124_random     31881 22 +     50403 tccgcctcctgggttcaagcga
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072053 22 + 229942017 tccgtctcctgggttcaagcga
i ponAbe2.chr1                 C 0 C 0
s papAnu2.chr1                 211071188 22 - 220367699 tccacctcccaggttcaagcca
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125301205 22 + 130588469 tccgcctcctgggttcaagtga
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003397 22 - 155834243 tccgactcccaggttcaggtga
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e rheMac3.chr1                 220038267 75 - 229590362 I
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=276204.000000
s hg38.chr1_KI270714v1_random      31755 223 +     41717 ttctcctgcctcagcctcccgagtagctgggactacaggcgtgtgctaccacacctggctaa-----tttttttttttttgta-gttttagtagatacggggtttcaccatgttggccaggatggtcttgatctactgacctc--gtgatctgcccgc--ctcggcctccctaagtgctgggattacaggcatgagccaccgcgcctggccTGAGCCACTGCACCCAGCCAAC
s panTro4.chr1_GL389124_random     31903 228 +     50403 ttctcctgcctcagcctcccgagtagctgggactacaggcgtgtgctaccacacctggctaattttttttttttttttttgta-gttttagtagatacggggtttcaccatgttggccaggatggtcttgatctactgacctc--gtgatctgcccgc--ctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcctgtccTAAGCCACTGCACCCAGCCAAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072075 200 + 229942017 ttctcctgcctcagcctcccgagtagctgggactacaggcgtgtgctaccacacctggctaa---------attttttttgta-tttttagtagagacggggtttcaccatgttggccaggatggtctcgatctactgacctc--atgatctgcctgc--ctttgcctcccaaagtgctgggattacaggcatg-------------------agccactgcacccggccAAC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220038342 199 - 229590362 ttctcctgcctcagcctcctgagtagctgggactacaggcgcctgccgcctcgcccggcta------------cttttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatccacccgt--ttcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccTATA------------------
i rheMac3.chr1                 I 75 C 0
s papAnu2.chr1                 211071210 199 - 220367699 ttctcctgcctcagcctcctgagtagctgggactacaggcgcctgccacctcgcccggcta------------cttttttgtattttttagtagagacggggttttaccgtgttagccaggatggtctcaatctcctgacctc--gtgatccacccgt--ctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcctata------------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125301227 219 + 130588469 ttctcctgcctctgcctcctgagtagctgggactacaggtgtgtgctaccacacctggctaa---------attttttttgta-tttttagtagagatggggtttcaccatgttggccaggatggtctcgatctgctgacctc--gtgatccgccggc--ctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggccTaagccaccacacccaaccaac
i chlSab2.chr20                C 0 I 357
s calJac3.chr7                 115003419 183 - 155834243 ttctactgcctcagcctcccaagtagctgggactacaggcatgcctcaccacacccggctaa--------------tttcata-tttttagtagaggtggggtttctccacgttggtcaggctagtctggaactcctgacctcaggtgatctgcccgcctctcagcctcctaaagtgcagtgattataggcatgagcc-----------------------------------
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=32367.000000
s hg38.chr1_KI270714v1_random      31978 24 +     41717 TATTTTTTTAATGtactgtgaaga
s panTro4.chr1_GL389124_random     32131 24 +     50403 TATTTTTTTAATGtactgtgaaga
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072275 24 + 229942017 TATTTTTTTAATGtactgtgaaga
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220038541 21 - 229590362 ---TTTTTTAATGtactgtgaaga
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211071409 21 - 220367699 ---ttttttaatgtactgtgaaga
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125301803 23 + 130588469 ta-ttttttaatgtactgtgaaga
i chlSab2.chr20                I 357 C 0
s calJac3.chr7                 115003602 13 - 155834243 -----------TGtactgtaaaga
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e canFam3.chr5                  28614843 329 -  88915250 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=499666.000000
s hg38.chr1_KI270714v1_random      32002 285 +     41717 gtaactgagattacacctttaaggcactcggcagggtacctgcctaagtcagaatccaatgaatagtGTTTGCTGTCCTATGACCACTAGCAGCTGCATCCAGACAGGCCCTCAGGTGCCCTGGGCTCTGGTGCCA-----CCCCCCATGGTCCCTCGACAGAGTCACAGGCTCTCTTAACTGATGGGGacccaccactgatgcagaaatgtccttccctgtgtccatcctggcttatataccctagtgacagagtgctcactacctgctgggccattcattctcttcca
s panTro4.chr1_GL389124_random     32155 285 +     50403 gtaactgagattacacctttaaggcactcggcagggtacctgcctaagtcagaatccaatgaatagtgtttgctgtCCTATGACCACTAGCAGCTGCATCCAGACAGGCCCTCAGGTGCCCTGGGCTCTGGTGCCA-----CCCCCCATGGTCCCTCGACAGAGTCACAGGCTCTCTTAACTGATGGGGacccaccactgatgcagaaatgtccttccctgtgtccatcccggcttatataccctagtgacagagtgctcactacctgctgggccattcattctcttcca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072299 270 + 229942017 gtaactgatattacacctttaaggcactcggcagggtaactgcctaagtcagaatccaatgaatagtGTTTGCTGTCCTATGATCGCTAGCAGCTGCATCCAGAGAGGCCCTCA---------------GGTGCCA-----CCCCCCACGGTCCCTCAacagagtcacagactctcttaactgaaggggacccaccattgatgcagaaatgcccttcccagtgtccaccccagcttatataccctagtgacagagtgctcactacctgctgggccattcattctcttcca
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220038562 283 - 229590362 gtaactgagattacacctttaaggcactcggcagggtacctgcctaagtcagaatccaatgagtggtGTTTGCTGTCCTATGACCACTAGCAGTTGCATCCAGAGAGGCCCTCAGGTGCCCTGGGCCCTAGTGCCA-------CCCCACGGTCCCTCAACAGAGTCACAGACTCTCTTAGCTAAGGGATACCCACCATTGATGCAGCAAAGcccttcccagtgtccatcctggcttatataccctagtgacagggtgctcactacctgctgggccactcattctcttccg
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211071430 283 - 220367699 gtaactgagattacaccTTTAAGGCACTCGGCAGGGTACCTGCCTAAGTCAGAATCCAATGAGTGGTGTTTGCTGTCCTATGACCACTAGCAGTTGCATCCAGAGAGGCCCTCAGGTGCCCTGGGCCCTAGTGCCA-------CCCCACGGTCCCTCAACAGAGTCACAGACTCTCTTAGCTAAGGGATACCCACCATTGATGCAGCAAAGCCCTTCCCAGTGTCCATCCTGGCTTATATACCCTAGTGACAGGGTGCTCACTACCTGCTGGGCCACTCATTCTCTTCCG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125301826 283 + 130588469 gtaactgagattacacctttaaggcactcggcagggtacctacctaagtcagaatccaatgagtggtGTTTGCTGTCCTATGACCACTAGCAGTTGCATCCAGAGAGGCCCTCAGGTGCCCTGGGCCCTAGTGCCA-------CCCCATGGTCCCTCAACAGAGTCACAGACTCTCTTAGCTAAGGGATACCTACCATTGATGCAGCAAAGcccttcccagtgtccatcctggcttatataccctagtgacagggtgctcactacttgctgggccactcattctcttcca
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003615 265 - 155834243 gtaactgagatgacacctttaaggcacttggcagggtacctgcctaagtcagaatctaatgaatggtgtttgctgttCTATGACTGCTAGCAGCTGCACCCAGGGAGGCCCTCACATGCCCTGGGCTCTGATGCCACCCCCCCCCCCACAGTCCCTCAAGAGAGTCACAGACTCTTTTAGCTCAAGGGAACTCGCCATGGATGTAGAAATGCCCTTCCTAGTGTCCATTCT-GCTTGTATACCACAGTGA------------------------CACTCATTCTCTTCCG
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28615172 256 -  88915250 GCGACTGAGGTTCTA-CTATAAAGCACCGGGCAGAGTACCTGCTGGAGTCAGAATTCACGGAGTGGTGTCTGTTG---------CAATTGTAGTCGCTGTTAAGAGGGGCTGGAGGGG--CTGGGGCTTTGTGCCA-----CCCCCACCGCATCCTTGAAA------------CTCTCAG-TGGGAAAGAACCACCTCTTGTGCAGAAATG-CCTTCACAGCATCCACCC--ATTTGTACACCCTGCCAACAGGGTGCTCACTATCTGTTGGACC-CTTGCTCTCTCTGG
i canFam3.chr5                 I 329 C 0
e mm10.chr4                    152136875 214 + 156508116 I
e micMur1.scaffold_20500           10324 1868 -     13323 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=192137.000000
s hg38.chr1_KI270714v1_random      32287 87 +     41717 gagactctttctcg--gggggaagttcaccctcaggcccgcctgcagcct--ctg-gcctctgggccttgctgtgttctgcagcccccagag
s panTro4.chr1_GL389124_random     32440 87 +     50403 gagactctttctcg--gggggaagttcatcctcaggcccgcctgcagcct--ctg-gcctctgggccttgctgtgttctgcagcccccagag
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072569 87 + 229942017 gagactctttctca--gggggaagttcatcctcaggcctgcctgcagcct--cta-gcctctgggccttgctgtgttctgcagcccccagag
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220038845 87 - 229590362 gagactctttctgg--ggcggaatttcattctcaggcccgcctgcagcct--ctg-gcctttgggccttgctatgttctgcagcccccagag
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211071713 87 - 220367699 GAGACTCTTTCTGG--GGCGGAAGTTCATCCTCAGGCCCGCCTGCAGCCT--CTG-GCCTTTGGGCCTTGCTGTGTTCTGCAGCCCCCAGAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302109 87 + 130588469 gagactctttctgg--ggcagaagttcatcctcaggcccgcctgcagcct--ctg-gcctttgggccttgctgtgttctgcagcccccagag
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003880 86 - 155834243 AAGACTCTTTCTTG--GG-GGAAGTTCATCCTCAGGCCCACCTGCAGCCT--CTG-GCCTCTGGGCCTTGCTGTTTTCTGCAGCCCCCAGAG
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152137089 79 + 156508116 GAGACCCTCTCT-------GGAAGTTCATCTCCTAACCT---TTCAGCTTGCTTG-ACCCCTAGGCCCTGCTGTACTGTTCACAACCCAG--
i mm10.chr4                    I 214 C 0
s canFam3.chr5                  28615428 90 -  88915250 GTGGCCTCTTGGGGGTGGGGGGAATTCTTCCTCAGGTCCAGCTGCAGTTT--CAGAACCCCTGGGCCTTGCTGTGCTCTGGAGCACCCAGAA
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_20500           10324 1868 -     13323 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=752872.000000
s hg38.chr1_KI270714v1_random      32374 302 +     41717 ccaggac-catccccctGTGCTGGCAGGGACGACAGATGGACAGAAGGTGCTCAGGGCACAGACCATCTGCCTTCTTCCCTCCGGGCCTCATTTCACAGCCCCTT-CATGG-CCAGGCTGCCCCATGGAGTTGGTCCGCATCCTTTTGGGGTTGGCTGTGAGGCCCACTCTCTTCCCTGCCTAT---TGCCTCAAAGCAGGCATTGTACCAGATGGTGCagagccct-cacttggagacatccacagctgagttcaagtcccagtaggtcacttcgtggctgtctca---ccataaaaacataatttaaAAA
s panTro4.chr1_GL389124_random     32527 302 +     50403 ccaggac-catccccctGTGCTGGCAGGGACGACAGATGGACAGACGGTGCTCAGGGCACAGACCATCTGCCTTCTTCCCTCCGGGCCTCATTTCACAGCCCCTC-CATGG-CCAGGCTGCCCCATGGAGTTGGTCCGCATCCTTTTGGGGTTGGCTGTGAGGCCCACTCTCTTCCCTGCCTAT---TGCCTCAAAGCAGGCATTGTACCAGATGGTGCAGAGCCCT-CACTTGGAGACATCCACAGCTGAGTTCAAGTCCCAGTAGGTCACTTCGTGGCTGTCTCA---CCATAATAACATAATTTAAAAA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072656 303 + 229942017 ccaggac-catccccctGTGCTGGGAGGGAGGGCAGATGGACAGACAGTGCTCAGGGCACAGACCATCTGCCTTCTTCCCTCCGGGCCTCATTTCACAGCCCCTC-CATGG-CCAGGCTGCCCCATGGAGTTGGTCCGCATCCTTTTAGGGTTGGCTGCGAGGCCCCCTCTCTTTGCTGCCTAT---TGCCTCAAAGCAGGCATTGTACCAGATGGTGCAGAGTCCTGCACTTGGAGACATCCACAGCTGAGTTCAAGTCCCATTGGATCACTTCATGGCTGTCTCA---CCATAATAACATAATTTAAAAA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220038932 302 - 229590362 ccaggac-catccccctGTGCTGGCAGGGAGGGCAGATGCACCGACGGTGCTCAGGGCACAGACCA-CTGCCTTCTTCCCTCCGGGCCTCATTTCACAGACCCTC-CATGG-CCAGGCTGCCCCATGGAGTTAGTTCACATCCTTTTGGGGTTGGCTGCGAGGCCCACTCTCCTCCCTGCCTGT---TGCCTCAAAGCAGGCATTGTACCAGCTGGTGCagagccctgcacttggagacatccacagctgagttcaagtcccagccggtcacttcatggctgtctca---ccataataacataatttaaAAA
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211071800 303 - 220367699 CCAGGAC-CATCCCCCTGTGCTGGCAGGGAGGGCAGATGCACCGACGGTGCTCAGGGCACAGACCATCTGCCTTCTTGCCTCCGGGCCTCATTTCACAGACCCTC-CATGG-CCAGGCTGCCCCATGGAGTTAGTTCACATCCTTTTGGGGTTGGCTGCGAGGCCCACTCTCCTCCCTGCCTGT---TGCCTCAAAGCAGGCATTGTACCAGCTGGTGCAGAGCCCTGCACTTGGAGACATCcacagctgagttcaagtcccagcCGGTCACTTCATGGCTGTCTCA---CCataataacataatttaaaaa
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302196 303 + 130588469 ccaggac-catccccctGTGCTGGTAGGGAGGGCAGATGCACCAACGGTGCTCAGGGCACAGACCATCTGCCTTCTTCCCTCCGGGCCTCATTTCACAGACCCTC-CATGG-CCAGGCTGCCCCATGGAGTTAGTTCACATCCTTCTGGGGTTGGCTGCGAGGCCCACTCTCCTCCCTGCCTAT---TGCCTCAAAGCAGGCATCGTACCAGCTGGTGCagagccctgcacttggagacatccacagctgagttcaagtcccagctggtcacttcatggctgtctca---ccataataacataatttaaAAA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115003966 291 - 155834243 TCTGGAC-CATTCCCCTGTGCTGACAGGCAGGGCAGATGGATAGATGCTGCTCAGAGCACGAACCATCTGCCTCCTCCCCTCCGGGCCTCA-CTCGCAGCCCCTC-CATGG-CCA-----------GGAGCTGGTCCACATCCTTGTGTGGTCTCCTGCGAGGCCCACTCTCTTTCCTGCCCAT---TGCCTCAAAGCAGGTATTGTACCAGATGGTGCAGCGCCCTGCACTTCGAGACACCCACAGCTGAGATCAAACCCCAATGGGTCACTTCATGGCTGTCTCA---CTATAATAAAGTAATTTAAAAA
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500           12193 280 -     13323 CCAGGGG-CAT-CCCATGTGCTGGCAGACAGGGCAG------------TGCTCAGGGGA-GGGCCATCTGCCTTCTCTCCTCCAGGCCTAATTTCGCAGTCCCTCTCATGGCCCAGGCTGTCCCCTGAAGCTGGTCAGTGTGCTTCTGAAGGCACCAGTGAGGCCCACCCTCTGTCCTCCCCAC---TGCCCCAAAGCAGGCATTGTACCAGATGGGGCCGAGCCCTGCACTTGGAGACGCCCACACCTGA-------CCCCACC----CACTTCATGCCCATCTAA---CCataataaaataattttaaaa
i micMur1.scaffold_20500       M 1868 I 354
s mm10.chr4                    152137168 278 + 156508116 CCAGGAT-CA--CCTACACACTAGCAAGCAGAGCA-------------------------AGCCTATTGGCCTTCTTTCCTCC-GGCTTCATCTGGAAGACTTCCTCATGG-CTGGGCTGGGCCCTGGAGATAG----CATCCCTCTGAGAGGGGCTGTGAGACCCATCTTTTTCCTTTTCTATTACTGCCTCAAGGTGAGCGTTGAATTATCTGGGACAGGGCCCTGGACTTGGGGACACATTCACCGGAGCCTGAGTCTTACTGGGTCATCTTGTGACTTTGTAAAACATATAGCAAGATAATTTACAAG
i mm10.chr4                    C 0 I 1
s canFam3.chr5                  28615518 286 -  88915250 CCAGGGTGCCCCGCCCTGTGCTTGCAGACAGTGCAATGG-------------CAGGATGAGGACATCCCACCTTCTCCCCTCCAGGTATCATTTCCTAGCCCCTCTTCTGG-CCAGGCTGCCCCCTGGCACTGG------TCCTCCTGAAGACACCTGGGAGACCCACCCTCCATCCTCCCCCG---TGCCCCAAAGCAAGcattatatcagatgagtcagcgccctggacttggagccaaccgcacctgagctcaagtctcaggaggtgacttcacagctgtgcaa---ccataataaaatcatttaaAAA
i canFam3.chr5                 C 0 C 0
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=16677.000000
s hg38.chr1_KI270714v1_random      32676 11 +     41717 GAGTAGCATGG
s panTro4.chr1_GL389124_random     32829 11 +     50403 GAGTAGCATGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072959 11 + 229942017 GAGTGGCGTGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220039234 11 - 229590362 GAGTAGCATGG
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211072103 11 - 220367699 gagtaGCATGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302499 11 + 130588469 GAGTAGCATGG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115004257 11 - 155834243 GAGTAGCGTAG
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152137447 10 + 156508116 ATATATCATG-
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28615804 11 -  88915250 AGATGATACAA
i canFam3.chr5                 C 0 C 0
e micMur1.scaffold_20500           12473 354 -     13323 I
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=155660.000000
s hg38.chr1_KI270714v1_random      32687 67 +     41717 GTTTCCAGTTATGACCCAGCCATGAAGTCAGCTAATAtatggtgcaggggcagagaggtggctcctg
s panTro4.chr1_GL389124_random     32840 67 +     50403 GTTTCCAGTTATGACCCAGCCATGAAGTCAGCAAATAtatggtgcaggggcagagaggtggctcctg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224072970 67 + 229942017 GTTTCCAGTTATGACCCAGCCATGAAGTCAGCAAATgtatggtgcaggggctgagaggtggctcctg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220039245 67 - 229590362 GTTTCCAGCTATGAACCAGCCGTGAAGTCAGCAAATgtacagtgcaggggctgagaggtggctcctg
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211072114 67 - 220367699 GTTTCCAGTTATGAACCAGCCATGAAGTCAGCAAATGTACAGTGCAGGGGCTGAGAGGTGGCTCCTG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302510 67 + 130588469 GTTTCCAGTTATGAACCAGCCATGAAGTCAGCAAATgtatggtgcaggggctgagaggtggctcctg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115004268 45 - 155834243 ATTTCCAGTTATGAAGCAGCCATGAGGTCAGCAAATGTACAG----------------------ATG
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_20500           12827 62 -     13323 GTTTCCAGTGATGAAGTAGCTATGAAGTGGGCAAACATACAgtgcagtggacaggagag-----atg
i micMur1.scaffold_20500       I 354 C 0
s mm10.chr4                    152137457 62 + 156508116 --TTTTAGTTTTGAGGCAACTACAAAGTGAGCAGATGT---GTACCAGTCAAGACAGGTGGCTCCTg
i mm10.chr4                    C 0 I 788
s canFam3.chr5                  28615815 67 -  88915250 GTTTCCAGTTATGAAGTAACCATGAAGTGAGCAAACACacagtgtagtgatcaagcagtggctctag
i canFam3.chr5                 C 0 C 0
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=582667.000000
s hg38.chr1_KI270714v1_random      32754 291 +     41717 gtcaggccatc-aaggtaggttctccactctaccacttactggtgatgcgatcctggtgccccgcagactccctttacccatatgtggaacgggacacttacactctcttctgcagagggtggctgtgagtta--tacccaagctaat------gtctatgGGTAGGTGAATGAGCCTGCCTGTTCCCAATGGGGCCT----GTCTTGTGATTTCTCCA-GCCTTACCCCTT---GGGGTGACCCTGTTCTTCCCTGTCC-TCTTTCCGTTAACCTTTGTGCCTCTACTCCCTCAGTCCCCAGCAGGCA
s panTro4.chr1_GL389124_random     32907 291 +     50403 gtcaggccatc-aaggtaggttctccactctaccacttactggtgatgtgatcctggtgccccgcagactccctttacccatatgtggaacgggacacttacactctcttctgcagagggtggctgtgagtta--tacccaagctaat------gtctatgGGTAGGTGAATGAGCCTGCCTGTTCCCAATGGGGCCT----GTCTTGTGATTTCTTCA-GCCTTACCCCTT---GGGGTGATCCTGTTCTTCCCTGTCC-TCTTTCCGTTAACCTTTGTGCCTCTACTCTCTCAGTCCCCAGCAGGCA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224073037 292 + 229942017 gccaggccatc-aaggtaggttgtccactctaccacttactggtgatgccatcttggtgccccacagacccactttatccgtatgtggaacgggacacttacactcttttccgcagagagtggctgtgagtta--tacccaagctaat------gtctatggaTAGGTGAATGAGCCTGCCTGTTCCCAGTGGGGCCTG---GTCTTGTGATTTCTCCA-GCCTTACCCCGT---GGGGTGACTCTGTTCTTCCCTGTTC-TCTTTCCGTTAACCTTTGTGCCTCTAATCCCTCAGTCCCCAGTAGGCA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220039312 290 - 229590362 gccaggccatc-aaggcaggttctccactctaccccttactggtaatgtgatcttggtgccccgcagactcagtttatccatatgtggaacgggacacttacactgtcttctgcagag-atggctgtgagtta--tacccaagctaat------GTCTATGGGTGGGTGAATGAGCCTAACTGTTCCCAATGGGGCCT----GTCTTGTGATTTCTCCA-GCCTTACCCCTT---GGGGTGACCCCGTTCTTCCCTGTCC-TCTTTCTGTTAACCTTTGTGCCTCTAATCCCTCAGTCCCCAGTAGGCA
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211072181 290 - 220367699 GCCAGGCCATC-GAGGCAGGTTCTCCACTCTACCCCTTACTGGTAATGTGATCTTGGTGCCCCGCAGACTCAGTTTATCCATATGTGGAAAGGGACACTTACACTGTCTTCTGCAGAG-GTGGCTGTGAGTTA--TACCCAAGCTAAT------GTCTATGGGCGGGTGAATGAGCCTAACTGTTCCCAATGGGGCCT----GTCTTGTGATTTCTCCA-GCCTTACCCCTT---GGGGTGACCCTGTTCTTCCCTGTCC-TCTTTCTGTTAACCTTTGTGCCTCTAATCCCTCAGTCCCCAGTAGGCA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302577 290 + 130588469 gccaggccatc-aaggcaggttctccactctaccccttactggtgatgtgatcttggtgccccgcagactcagtttatccatatgtggaacgggacacttacactgtcttctgcagag-gtggctgtgagtta--tacccaagctaat------GTCTATGGGCGGGTGAAGGAGCCTAACTGTTCCCAATGGGGCCT----GTCTTGTGATTTCTCCA-GCCTTACCCCTT---GGGGTGACCCTGTTCTTCCCTGTCC-TCTTTCTGTTAACCTTTGTGCCTCTAATCCCTCAGTCCCCAGTAGGCA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115004313 292 - 155834243 CCATGGCCATCGGAGGCAGGTTCTCCActctaccatttattggtgatgtgatcttggtgccccacagactcagtttatccatctgtggaatgggacacttacaccctcttctgcagagggtggctgtgactta--tatccaagctaat------gtctatgGGCA-GTGAATGAGCCTTACTGTTCCCAGTGGGGCAT----ATGTTGTGATTTCTCCA-GCCTTACCCCTT---GAGGTGACCCGGTTCTTCCCTGTCCATCTTTCTGTTAACCTTTGTGCCTCTACTCCCTCAGTCCCCAGAAGGCA
i calJac3.chr7                 C 0 M 2390
s micMur1.scaffold_20500           12889 242 -     13323 gccgggccatc-ctgaggagaacctggctctaccacttactggctgtgtgaccttggtgtctcagagcctcagtttacccatctgtggaatgggACACC----CTCCATCCATCAGAAGGTGACTGT------------TGAGCTAAT------GCACGTGGGTGGGTACATGTATCTGGCTGCTCCCAGTGG---------------------CACCA-GCCCTCACTTTT---AGAGTGACCCTGGCCTTCCC--TCC-TCCTTCTCTTGAACTTTTGGCCT----------------CAGTGGGCA
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28615882 256 -  88915250 gccatgccact-cag------------ctccaccatttaacagctgtgtgaccttgg---------------------------gtgagttaGGACACTAACACCACCTCCT-CTGAG-GCGGTGGAGAGTTAGTTACATGAGCTACTAGTGTGGGCTGTGGGCCGGCGAATGAacttgactattcccatcggtatgtaagtgtcctgtgatttctccAGGCCTTCTTCCTTACCAGGACGACGCTG---------GTCC-TCTTGCCCTTGGCCCTTTCTCCTTCACCCTCTCA-CCCTCAGTGGTCA
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152137519 788 + 156508116 I
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=52649.000000
s hg38.chr1_KI270714v1_random      33045 27 +     41717 Gtggttctgggctgacaggtcgtg-tgg------------------------------
s panTro4.chr1_GL389124_random     33198 27 +     50403 Gtggttctgggctgacaggtcgtg-tgg------------------------------
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224073329 27 + 229942017 Gtggttctggactgagaggtcgtg-tgg------------------------------
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220039602 27 - 229590362 GTGGTTCTGGGCTGAGAGGTCGTG-TGG------------------------------
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211072471 27 - 220367699 GTGGTTCTGGGCTGAGAGGTCGTG-TGG------------------------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302867 27 + 130588469 GTGGTTctgggctgagaggtcgtg-tgg------------------------------
i chlSab2.chr20                C 0 C 0
s micMur1.scaffold_20500           13131 27 -     13323 GTGGCTCTGGGCAGAGAGGTCGTG-TGG------------------------------
i micMur1.scaffold_20500       C 0 C 0
s canFam3.chr5                  28616138 58 -  88915250 GTGGTTCTGGGCTGAGAGAGCGTGATGGtctgcggtattttctcattgtgtgacctcg
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152137519 788 + 156508116 I
e calJac3.chr7                 115004605 2390 - 155834243 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=330681.000000
s hg38.chr1_KI270714v1_random      33072 150 +     41717 ggtagc--------------------gggcttcacgtctctgaacctcagcttcctccttggt-aaaaggggtgacgacacccaccactggggtggaggggcgagaagagaga---atgcGAC----------AGGAGCAGCGC-AGGGATCGTACCAGGTTCTCCACCGTGCGCAGGTAGTGGG
s panTro4.chr1_GL389124_random     33225 150 +     50403 ggtagc--------------------gggcttcacgtctctgaacctcagcttcctccttggt-aaaaggggtgacgacacccaccactggggtggaggggcgagaagagaga---atgcGAC----------AGGAGCAGCGC-AGGGATTGTACCAGGTTCTCCACCGTGCGCAGGTAGTGGG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224073356 150 + 229942017 ggtagc--------------------gggcttcacgtccctgaacctcagcttcctccttggt-aaaaggggtgacgacacccaccactggggtggaggggcgagaagagaga---atgcGAC----------AGGAGCAGCCC-AGGGATCGTACCAGGTTCTCCACCGTGCGCAGGTAGCGGG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220039629 151 - 229590362 GGTAGT--------------------GGGcttcccgtccctgaaccgcagcttcctccttggtaaaaaggggtgacgacacccaccactggggtggaggggcgagaagagaga---atgcTAC----------AGGAGCAGCGC-AGGGATCGTACCAGGTTCTCCACAGTGCGCAGGTAGCGGG
i rheMac3.chr1                 C 0 C 0
s papAnu2.chr1                 211072498 151 - 220367699 GGTAGT--------------------GGGCTTCCTGTCCCTGAACCGCAGCTTCCTCCTTGGTAAAAAGGGGTGACGACACCCACCACTGGGGTGGAGGGGCGAGAAGAGAGA---ATGCTAC----------AGGAGCAGCGC-AGGGATCGTACCAGGTTCTCCACAGTGCGCAGGTAGCGGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125302894 151 + 130588469 ggtagt--------------------gggcttcccgtccctgaacctcagcttcctccttggtaaaaaggggtgacgacacccaccactggggtggaggggcgagaagagaga---atgcTAC----------AGGAGCAGCGC-AGGGATCGTACCAGGTTCTCCACAGTGCGCAGGTAGCGGG
i chlSab2.chr20                C 0 C 0
s micMur1.scaffold_20500           13158 165 -     13323 GGTAGTGGGCAAGgaccccgggcaaggggcttcgcgtccctgaacctcagcctcctcctcggt-aaaagaggtgacaacacctacGGCCGG---GGGAGGGCGCGAGAAGAGA---ACGTGGA----------GGGGGCAGCGC---GGGCCGTACCAGGTTCTCCACGGTGCGCAGGTAGCGGG
i micMur1.scaffold_20500       C 0 N 0
s mm10.chr4                    152138307 151 + 156508116 GGCAAG--------------------AGGCATCATATCTCTGAACTTCACCTTTCTCCTTGGT-ACAAGGG--CAAGACACTGATTCTTGGGGTTAAATGGTGAGAAGGGTGAGAGACTCCAC----------ACCAGCCACTT-GTGGGTCATACCAGGGTTTGCACCGTACGTAGGTAGCGGG
i mm10.chr4                    I 788 C 0
s canFam3.chr5                  28616196 156 -  88915250 gacaag--------------------gggctccaggtctc-gaaactcagcttcttccgtggt--aaaggggtaagaacacctaccgctgg---ggagaggtgggaatGGGGT---GGGGGACGACATAACCGGGGAGCAGCGCCGGGGGTCGTACCAGGTTCTCCACGGTGCGCAGGTAGCGGG
i canFam3.chr5                 C 0 C 0
e calJac3.chr7                 115004605 2390 - 155834243 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=595626.000000
s hg38.chr1_KI270714v1_random      33222 300 +     41717 TGCAGTGGCTGTGGCCGTTGAAGTCCGACAGGTCAGCGGCCGTGTACCCGTCGCGGTCGCGGACTTCCAGCTCCGCGCCGTTCACTACCAGGATCTGGCAGCACTGTGGGGG--CACGCAGTGAGGACCCGGCCGCGGCCACGAGCTGGGACCCCC--------GCGCCCGGGCAGGGCCGTGCGGAGAGCGCGGTGCCAGCAGAGGGCG--CGCG-------------------CCCCCACCCCG-----------------------------------GGCCCGCGCTGACCCCTAGCTCCCCGTTCTCGGCGGCGTCGTACAGCGCGGTCCCGCCCCACAGGTCAGCCGAGATCTCCCCGCC
s panTro4.chr1_GL389124_random     33375 300 +     50403 TGCAGTGGCTGTGGCCGTTGAAGTCCTATAGGTCAGCGGCCGTGTACCCGTCGCGGTCGCGGACTTCCAGCTCCGCGCCGTTCACTACCAGGATCTGGCAGCACTGTGGGGG--CACGCAGTGAGGACCCGGCCGCGGCCACGAGCTGGGACCCCC--------GCGCCCGGGCAGGGCCGTGCGGAGAGCGCGGTGCCAGCAGAgggcg--cgcg-------------------cccccaccccg-----------------------------------ggcccgcgcTGACCCCTAGCTCCCCGTTCTCGGCGGCGTCGTACAGAGCGGTCCCGCCCCACAGGTCAGCCGAGATCTCCCCGCC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224073506 300 + 229942017 TGCAGTGGCTGTGGCCGTTGAAGTCCGACAGGTCGGCGGCCGTGTACCCGTCGCGGTCGCGGACGTCCAGCTCCGCGCCGTTCACTACCAGGATCTGGCAGCACTGCGGGGG--CACGCAGTGAGGACCCGGCCGCGGCCGCGAGCTGGGACCCCC--------GCGCCCGGGCAGGGCCGTGCTGAGAGCGCGGTGCCAGCAGAgggcg--cgcg-------------------cccccaccccg-----------------------------------ggcccgcgcTGACCTCTAGCTCCCCGTTCTCAGCGGCGTCGTGCAGCGGCGTCCCGCCCCACAGGTCAGCCGAGATCTCCCCGCC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220039780 300 - 229590362 TGCAGTGGCTGTGGCCGTTGAAGTCCGACAGGTCGGCGGCCGTGTACCCGTCGCGGTCGCGGACGTCCAGCTCTGCGCCATTTACTACCAGGATCTGGCAGCACTGCGGGGG--CACGCATTGAGGACCCGGCCCCGGCCAGGAGCTGGGACCCCC--------ACACCCGGGCAGGGCCATGCCGAGAGCGCGGTGCCAGCAGAGGGCG--CGCG-------------------CCCCAATCCCG-----------------------------------GGCCCGCGCTGACCTCTAGCTCCCCGTTCTCGGCGGCGTCGTGCAGTGGGGTCCCGCCCCACAGGTCAGCCGAGATCTCCCCGCC
i rheMac3.chr1                 C 0 M 373
s papAnu2.chr1                 211072649 300 - 220367699 TGCAGTGGCTGTGGCCGTTGAAGTCCGACAGGTCGGCGGCCGTGTACCCGTCGCGGTCGCGGACGTCCAGCTCCGCGCCATTTACTACCAGGATCTGGCAGCACTGCGGGGG--CACGCATTGAGGACCCGGCCCCGGCCAGGAGCTGGGACCCCA--------ACACCCGGGCAGGGCCATGCCGAGAGCGCGGTGCCAGCAGAGGGCG--CGCG-------------------CCCCAATCCCG-----------------------------------GGCCCGCGCTGACCTCTAGCTCCCCGTTCTCGGCGGCGTCGTGCAGTGGGGTCCCGCCCCACAGGTCAGCCGAGATCTCCCCGCC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303045 300 + 130588469 TGCAGTGGCTGTGGCCGTTGAAGTCCGACAGGTCGGCGGCCGTGTACCCGTCGCGGTCGCGGACGTCCAACTCCGCGCCATTTACTACCAGGATCTGGCAGCACTGCGGGGG--CAGGCAGTGAGGACCCGGCCCCGGCCGCGAGCTGGGACCCCC--------ACACCCGGGCAGGGCCCTGCCGAGAGCGCGGTGCCAGCAGAGGGCG--CGCG-------------------CCCCAATCCCG-----------------------------------GGCCCGCGCTGACCTCTAGCTCCCCGTTCTCGGCGGCGTCGTGCAGTGGGGTCCCGCCCCACAGGTCAGCCGAGATCTCCCCGCC
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152138458 349 + 156508116 AACAGTGGGTGTGGCCATTGAACTCTGCCAGGTCGGCAGCGGTGTACCCATCGTGGTCGCGGACGTCCAGCCCAGCGCCGTTCACCGCGAGGATCTGGCAGCACTGTAAGAG--GGCGAAGCA----------CGAGGAGGAGAGGTGGGTCCCTCCATGTCCAGCACTTCAGAGAAGCTGCGAGGACATCGCTGGGCCGCCAGAGGGCGACAGCGTCCCAGTCT-CCGGCCCCGCCCCAACCACGCCTTCGCCCACTTTCCAGCCCCGCCCCTCTC----GGGCCGCCCTGACCTCCAGTTCCCCGTTCTCAGCAGCGTCATGCAGCGGGGTTCCGCCCCACAGGTCCTGCGAGATCTCTGCCCC
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28616352 344 -  88915250 TGCAGTGGCTGTGGCCGTTGTAGTCCGAGAGGTCGGCGGCAGTGTATCCGTCGCGGTCGCGGACGTCCAGCTCCGCGCCGTTCACTACCAGGATCTGGCAGCACTGCGGGGGGCCACGTACTGAGGACCCCGCCGC------TCGCCGGGACCCCC--------GCCCCGCCGCAGGGCTGTGCCGACAGTTCGGCGCCAGCAGAGGGcg--cccggccccgcccggcccgcccgctccagccccg------cccctcccccagccgcgcccctccccccagccccgccccTACCTCCAGCTCCCCGTTTTCAGCGGCGTCATGCAGCGGGGTCCCGCCCCACAGGTCGGCCGAGATCTCGCCGCC
i canFam3.chr5                 C 0 C 0
e calJac3.chr7                 115004605 2390 - 155834243 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=182673.000000
s hg38.chr1_KI270714v1_random      33522 108 +     41717 GTGCAGCAGCAGCCAGCTAGCTGAGCACCTTGCTGTGGCCGCGGCTCGCCGCGAAGTGCGTGGCGGTGGCGCCGTCTTTGTCCTGCTCCGACAGGCTCACGTCGGTGC
s panTro4.chr1_GL389124_random     33675 104 +     50403 GTGCAGCAGCAGCC----AGCTGAGCACCTTGGTGTGGCCGCGGCTCGCCGCGAAGTGCATGGCGGTGGCGCCGTCTTTGTCCTGCTCCGACAGGCTCACGTCGGTGC
i panTro4.chr1_GL389124_random C 0 I 943
s ponAbe2.chr1                 224073806 104 + 229942017 GTGCAGCAGCAGCC----AGCTGAGCACCTTGGTGTGGCCGCGGCTCGCCGCGAAGTGCATGGCGGTGGCGCCGTCTTTGTCCTGCTCGGACAGGCTCACGTCGGTGC
i ponAbe2.chr1                 C 0 C 0
s papAnu2.chr1                 211072949 104 - 220367699 GTGCAGCAGCAGCC----AGCTGAGCACCTTGGTGTGGCCGCGGCTCGCCGCGAAGTGCATGGCGGTGGCGCCGTCTTTGTCCTGCTCCGACAGGCTCACGTCGGTGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303345 104 + 130588469 GTGCAACAGCAGCC----AGCTGAGCACCTTGGTGTGGCCGCGGCTCGCCGCGAAGTGCATGGCGGTGGCGCCGTCTTTGTCCTGCTCCGACAAGCTCACGTCGGTGC
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152138807 104 + 156508116 GTGCAGCAGGAGCC----AGCTGAGCACTTTGGTGTGGCCGCGACTGGCAGCAAAGTGCATGGCCGTGGCGCCGTCGTGGTCCTGCTCTGAAAAGCTAACGTCTGCAA
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28616696 104 -  88915250 GTGCAGCAGGAGCC----AGCTGAGCACTTTGGCGTGGCCGCGGCTCGCCGCGAAGTGCATGGCGGTGGCGCCATCCTTGTCCTGCTCCGACAGGCTCACGTCGGTGC
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220040080 373 - 229590362 M
e calJac3.chr7                 115004605 2390 - 155834243 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=34785.000000
s hg38.chr1_KI270714v1_random      33630 39 +     41717 AGCTCACCTGGGCgggaggggcggg---gagagaggggcggg
s ponAbe2.chr1                 224073910 39 + 229942017 AGCTCACCTGGGCGGGAGCGGCGGG---GAGAGAGGGGCGGG
i ponAbe2.chr1                 C 0 I 492
s papAnu2.chr1                 211073053 39 - 220367699 AGCTCACCTgggcaggaagggcggg---gagagaggggcggg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303449 39 + 130588469 AGCTCACCTGGGCAGGAAGGGCGGG---GAGAGAGGGGCGGG
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152138911 41 + 156508116 AGCTCACCTGTA-GGGAGGGGCGGGGCAGAGGGCGGGGCTTG
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28616800 37 -  88915250 AGCTCACCTGGGCGGGAGGGGGTGC---GGGAAAGGGGGG--
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220040080 373 - 229590362 M
e calJac3.chr7                 115004605 2390 - 155834243 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I
e panTro4.chr1_GL389124_random     33779 943 +     50403 I

a score=11456.000000
s hg38.chr1_KI270714v1_random      33669 58 +     41717 gGATGGGGGCCAGG--CCCCTGCAGgccccg-ccc---------------------acggtcctccgccccactcctgatgg
s papAnu2.chr1                 211073092 79 - 220367699 ggctgggcgccagg--cccctgcgggccccgccccctacccctcccggtcccgtcaccgttcccccgccccac-cctgatgg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303488 78 + 130588469 GGCTGGGcgccagg--cccctgcgggccccg-cccctacccctcccagtcccgttcccgttcccccgccccac-cctgatgg
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152138952 40 + 156508116 -------CGCTGGGTCCCCCTCCTGGCCCCG------------------------------CCTCAGTCCCAG-CAGG----
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28616837 32 -  88915250 GGCTGGGcgccagg--ctcctccaggccccg-ccc-----------------------------------------------
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220040080 373 - 229590362 M
e calJac3.chr7                 115004605 2390 - 155834243 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I
e ponAbe2.chr1                 224073949 492 + 229942017 I
e panTro4.chr1_GL389124_random     33779 943 +     50403 I

a score=3000.000000
s hg38.chr1_KI270714v1_random      33727 3 +     41717 ccc
s papAnu2.chr1                 211073171 3 - 220367699 ccc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303566 3 + 130588469 ccc
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115006997 3 - 155834243 CCC
i calJac3.chr7                 M 2390 C 0
s mm10.chr4                    152138992 3 + 156508116 CCC
i mm10.chr4                    C 0 C 0
e canFam3.chr5                  28616869 0 -  88915250 C
e rheMac3.chr1                 220040080 373 - 229590362 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I
e ponAbe2.chr1                 224073949 492 + 229942017 I
e panTro4.chr1_GL389124_random     33779 943 +     50403 I

a score=1500.000000
s hg38.chr1_KI270714v1_random      33730 1 +     41717 c
s ponAbe2.chr1                 224074441 1 + 229942017 C
i ponAbe2.chr1                 I 492 C 0
s papAnu2.chr1                 211073174 1 - 220367699 c
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303569 1 + 130588469 c
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115007000 1 - 155834243 C
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152138995 1 + 156508116 C
i mm10.chr4                    C 0 C 0
e canFam3.chr5                  28616869 0 -  88915250 C
e rheMac3.chr1                 220040080 373 - 229590362 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I
e panTro4.chr1_GL389124_random     33779 943 +     50403 I

a score=32433.000000
s hg38.chr1_KI270714v1_random      33731 29 +     41717 gctccctccactccccgccctgccggctc
s panTro4.chr1_GL389124_random     34722 29 +     50403 GCTCTCTCCACTCCCCGCCCTACCGGCTC
i panTro4.chr1_GL389124_random I 943 C 0
s ponAbe2.chr1                 224074442 29 + 229942017 GCTccctccactccccgccctgccggctc
i ponAbe2.chr1                 C 0 C 0
s papAnu2.chr1                 211073175 29 - 220367699 accccctccacgccccgccctgccggctc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303570 29 + 130588469 accccctccacgccccgccctgccggctc
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115007001 29 - 155834243 ACCCACTCCACGCCCCGCCCTGCAGGCTC
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152138996 20 + 156508116 -----GCCCACTCCCAGGGCTGTAC----
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28616869 14 -  88915250 ---------------cgtccagccggccg
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220040080 373 - 229590362 M
e macFas5.chr1                 221920640 4547 + 227556264 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=20097.000000
s hg38.chr1_KI270714v1_random      33760 18 +     41717 -----------cgccccgtctcccctccg
s panTro4.chr1_GL389124_random     34751 18 +     50403 -----------CGCCCCGTCTCCCCTCCG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224074471 18 + 229942017 -----------cgccccgcctcccctcct
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221925187 18 + 227556264 -----------CGCCCCGCCTCCCCTCTC
i macFas5.chr1                 M 4547 I 1
s papAnu2.chr1                 211073204 18 - 220367699 -----------cgccccgcctcccctccc
i papAnu2.chr1                 C 0 I 1
s chlSab2.chr20                125303599 18 + 130588469 -----------cgccccgcctcccctccc
i chlSab2.chr20                C 0 I 1
s calJac3.chr7                 115007030  7 - 155834243 -----------CGCCCCG-----------
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152139016  8 + 156508116 -----------CGCCCTGT----------
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28616883 18 -  88915250 cttcgcgagcacgccccg-----------
i canFam3.chr5                 C 0 C 0
e rheMac3.chr1                 220040080 373 - 229590362 M
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=344845.000000
s hg38.chr1_KI270714v1_random      33778  95 +     41717 -caccgcccgggcccgGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGTGGGGTCATGCCGTCGTGGGCGCG--------
s panTro4.chr1_GL389124_random     34769  95 +     50403 -CACCGCCCGGGCCCGGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCTTGCAGTGGGGTCATGCCGTCGTGGGCGCG--------
i panTro4.chr1_GL389124_random C 0 I 8
s ponAbe2.chr1                 224074489  95 + 229942017 -ccccgcccgggcccgGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGCGGGGTCATGCCGTCGTGGGCGCG--------
i ponAbe2.chr1                 C 0 I 1144
s rheMac3.chr1                 220040457  95 - 229590362 -CACCGCCCGGGCCCAGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGCGGGGTCATGCCGTCGAGGGCGCG--------
i rheMac3.chr1                 M 373 I 8
s macFas5.chr1                 221925206  95 + 227556264 -CACCGCCCGGGCCCAGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGCGGGGTCATGCCGTCGAGGGCGCG--------
i macFas5.chr1                 I 1 I 8
s papAnu2.chr1                 211073223  95 - 220367699 -caccgcccgggcccAGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGCGGGGTCATGCCGTCGAGGGCGCG--------
i papAnu2.chr1                 I 1 I 8
s chlSab2.chr20                125303618  95 + 130588469 -caccgcccgggcccgGAGCTCACCAACCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGCGGGGTCATGCCGTCGAGGGCGCG--------
i chlSab2.chr20                I 1 I 8
s calJac3.chr7                 115007037  90 - 155834243 ------CCCGGGCCCGGAGCTCACCAGCCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCATGCAGCGGGGTCATGCCATCGTGGGCGCG--------
i calJac3.chr7                 C 0 I 8
s mm10.chr4                    152139024  86 + 156508116 ----------GGTCCTCAGCTCACCAGCCACACCAAGACTGGGTTGTGGCCCATCTGTGCTGCGGCATGTAGGGGTGTCATGCCGTCTTGGGCGCG--------
i mm10.chr4                    C 0 I 8
s canFam3.chr5                  28616901 104 -  88915250 cccctccccgGGCCCCGAGCTCACCAGCCACACGATGACCGGGCTGTGGCCCATCTGCGCCGCGGCGTGCAGCGGGGTCATGCCGTCGTGGGCGCTCGCGTGCG
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=586118.000000
s hg38.chr1_KI270714v1_random      33873 156 +     41717 GGTCCGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGCGGAGACACAGCGCCCACCGTGGGCTTTCAGCGCCT----CACCCCCTCC
s panTro4.chr1_GL389124_random     34872 155 +     50403 GGTCCGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCATCGTTCTTGGTTTGGGCATTCACTCCCCTGCGGAGACACAGCGCCCACCGTGGGCTTTCAGCGCCT----CACCCCC-CC
i panTro4.chr1_GL389124_random I 8 C 0
s ponAbe2.chr1                 224075728 156 + 229942017 GGTCTGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGCGGAGACACAACGCCCACCGTGGGCTTTCAGCGCCT----CACCCCCTCC
i ponAbe2.chr1                 I 1144 C 0
s rheMac3.chr1                 220040560 156 - 229590362 GGTCTGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGAGGAGACACAGTGCCCACGTTGGGCCTTCAGCGCCT----CACCCTCTCC
i rheMac3.chr1                 I 8 C 0
s macFas5.chr1                 221925309 156 + 227556264 GGTCTGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGAGGAGACACAGTGCCCACGTTGGGCCTTCAGCGCCT----CACCCTCTCC
i macFas5.chr1                 I 8 C 0
s papAnu2.chr1                 211073326 156 - 220367699 GGTCTGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGAGGAGACACAGTGCCCACGTTGGGCCTTCAGCGCCT----CACCCTCTCC
i papAnu2.chr1                 I 8 C 0
s chlSab2.chr20                125303721 156 + 130588469 GGTCTGCGCCGCATTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGCGGAGACACAGTGCCCACGTTGGGCCTTCAGCGCCT----CACCCCCTCC
i chlSab2.chr20                I 8 C 0
s calJac3.chr7                 115007135 156 - 155834243 GGTCCGCGCCGCACTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCTCTGTGGAGAAAGAGCGCCCACGGTGGGTTCTCAGTGCCT----CACCCCCTCA
i calJac3.chr7                 I 8 C 0
s mm10.chr4                    152139118 160 + 156508116 GATCTGCACTGCACTCCTGCACAAGGTACTTCGTCACTTCCAGGTGGCCCTCCTGGCACGCCAGGTACAGGGGCGTGGCACCGTTGTTGGTTTGGGCATTCACTCCCCTGTGAATAGGCAACACCCAGTGTGGGCTCTAGATGCCCGCTGCACTCTCGTC
i mm10.chr4                    I 8 I 1
s canFam3.chr5                  28617005 156 -  88915250 GGTCCGCGCCGCACTCCTGCACCAGGTACTGCGTCACCTCCAGGTGGCCCTCTTGGCACGCCAGGTACAGGGGCGTGGCACCGTTCTTGGTTTGGGCATTCACTCCCCTGCGGAGACACAGCACCCACCGTGGGCTCTCAGCACCC----ACCTCCCTCC
i canFam3.chr5                 C 0 C 0
e gorGor3.chr1                 222988982 3804 - 229507203 I

a score=3133.000000
s hg38.chr1_KI270714v1_random      34029 1 +     41717 G
s panTro4.chr1_GL389124_random     35027 1 +     50403 G
i panTro4.chr1_GL389124_random C 0 C 0
s gorGor3.chr1                 222992786 1 - 229507203 G
i gorGor3.chr1                 I 3804 N 0
s ponAbe2.chr1                 224075884 1 + 229942017 G
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220040716 1 - 229590362 G
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925465 1 + 227556264 G
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073482 1 - 220367699 G
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303877 1 + 130588469 G
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115007291 1 - 155834243 G
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152139279 1 + 156508116 A
i mm10.chr4                    I 1 C 0
s canFam3.chr5                  28617161 1 -  88915250 A
i canFam3.chr5                 C 0 C 0

a score=400931.000000
s hg38.chr1_KI270714v1_random      34030 171 +     41717 AGGCCTCCTTACCC----GCCCCCCTCCCCTCCCGGGGAGCCCTGGACGGCAGGGAGAGTGGGCGGGAGAG-GGCCCTGTCACCGGCCCGCTGCCGCCCGGGGGGCTCCCCCTGGACTGAGTCCTGAGCCACCCTCCCTCAGAGGCCCCTGAGGGCGTCCCACCCAGCACTGCCCT
s panTro4.chr1_GL389124_random     35028 171 +     50403 AGGCCTCCTTACCC----GCCCCCCTCCCCTCCCAGGGAGCCCTGGACGGCAGGGAGAGTGGGCGGGAGAG-GGCCCTGTCACCGGCCCGCTGCCGCCCGGGGGGCTCCCCCTGGACTGAGTCCTGAGCCACCCTCCCTCAGAGGCCCCTGAGGGCGTCCCACCCAGCACTGCCCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224075885 171 + 229942017 AGGCCTCCTTACCC----GCCCCCATCCCCTCCCGGGGAGCCCTGGACGGCAGGGAGAGTGGGTGGGAGAG-GGCCCTGTCACCGGCCCGCTGCTGCCCGGGGGGCTCCCCCTGGACTGAGTCCTGAGCCAACCTCCCTCAGAGGTCCCTGAGGGCGTCCCACCCAGCACTGCCCT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220040717 170 - 229590362 AGGCCTCCTTACGC-----CCCCCGCCCCCTCCCGGGGAGCCCTGAACGTCAGGGAGAGTGGGTGGGAGAG-GGCCCTGTCACCGGCCCGCTGCCGCCCCTGGGGCTTCCCCTGGACTTAGTCCTGAGCCACCCTCCCTCAGAGGGGCCTGAGAGCGTCCGACCCAGCACTGCCCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925466 170 + 227556264 AGGCCTCCTTACGC-----CCCCCGCCCCCTCCCGGGGAGCCCTGAACGTCAGGGAGAGTGGGTGGGAGAG-GGCCCTGTCACCGGCCCGCTGCCGCCCCTGGGGCTTCCCCTGGACTTAGTCCTGAGCCACCCTCCCTCAGAGGGGCCTGAGAGCGTCCGACCCAGCACTGCCCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073483 170 - 220367699 AGGCCTCCTTACGc-----cccccgcccccTCCCGGGGAGCCCTGAACGTCAGGGAGAGTGGGTGGGAGAG-GGCCCTGTCACCGGCCCGCTGCCGCCCCTGAGGCTTCCCCTGGACTTAGTCCTGAGCCACCCTCCCTCAGAGGCGCCTGAGAGCGTCCGACCCAGCACTGCCCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125303878 169 + 130588469 AGGCCTCCTTACGC-----CCCCCGCCCCCTCCCGGGGAGCCCTGAACGTCAGGGAGAGTGAGTGGGAGAG-GGCCCTGTCACCGGCCCGCTGCCGCCCCTGGGGCTTCCCC-GGACTTAGTCCTGAGCCACCCTCCCTCAGAGGCCCCTGAGAGCGTCCAACCCAGCACTGCCCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115007292 175 - 155834243 AGGCCTCCTTACGCCTCACCCCCGGTCCTCTCCCAGGGAGCCCTGGACCGCACGGAGAGTGGGTGGGAGAG-GGCTCTGTCACCCGCCCGTTGTCATCCTGGGAGGTGCCTCTGGGCTGAGTCCTGTGCCACCCTCCCTGAGAGGCCCCTGGGGGCGTCCGACGGAGCACTGCCCT
i calJac3.chr7                 C 0 C 0
s mm10.chr4                    152139280 137 + 156508116 AAAACTCCTTCAAC-----CTTTAGCTTGGCTCTCTGGAGTGCTGAAAGT-------GGCAGGTAACAAAGAGGCTTTGTCACAG-------GTTGTCCGAGA------TCTTTGGCTCAGTTCTATAATGCTGTCCCTCA-------------GCGTGTTTCTCCACTCTGCCC-
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28617162 144 -  88915250 AAGCCTTCTTATGC----CCCTTCGAGCTCCTTTGGGGAGTTCCGGAGGGCTGGGAGAGTGGGTTGGAGGA-GGTCTAGTCGCCGGGTC-CCGCTGTCCCTGA--TTCTCTCTGGACTTAGTCCAATGATAACCTCCCT--GTGGGTCCGGGGG----------------------
i canFam3.chr5                 C 0 C 0

a score=38049.000000
s hg38.chr1_KI270714v1_random      34201 38 +     41717 GCCCTCAGTCCCACtttttttttttttttttttttttt
s panTro4.chr1_GL389124_random     35199 38 +     50403 GCCCTCAGTCCCACtttttttttttttttttttttttt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076056 38 + 229942017 GCCCTCAGTCCTACtttttttttttttttttttttttt
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220040887 33 - 229590362 GCCCTCAGTCCCACttt---tttttctttttttttt--
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925636 27 + 227556264 GCCCTCAGTCCCACttt---------ttatttttta--
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073653 36 - 220367699 GCCCTCagtcccactttttttttttttttttttttt--
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304047 24 + 130588469 GCCCTCAGTCCCACttt------------ttttttt--
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152139417 19 + 156508116 -----------------CTCCTTATTATTGTTTTTT--
i mm10.chr4                    C 0 I 7
e canFam3.chr5                  28617306  0 -  88915250 C
e calJac3.chr7                 115007467  0 - 155834243 C

a score=1365.000000
s hg38.chr1_KI270714v1_random      34239 1 +     41717 t
s rheMac3.chr1                 220040920 1 - 229590362 t
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925663 1 + 227556264 t
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073689 1 - 220367699 t
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304071 1 + 130588469 t
i chlSab2.chr20                C 0 C 0
s rhiRox1.JABR01172412v1             478 1 -       479 t
i rhiRox1.JABR01172412v1       N 0 N 0
e mm10.chr4                    152139436 7 + 156508116 I
e canFam3.chr5                  28617306 0 -  88915250 C
e calJac3.chr7                 115007467 0 - 155834243 C
e ponAbe2.chr1                 224076094 0 + 229942017 C
e panTro4.chr1_GL389124_random     35237 0 +     50403 C

a score=180194.000000
s hg38.chr1_KI270714v1_random      34240 110 +     41717 tttttgagaagaagtctagctctgtcgcccaggctggagtgcagtggctggatcttggctcactgcaatctctgcctcccgggttcaagcgattcttctgcttcagcctc
s panTro4.chr1_GL389124_random     35237 105 +     50403 -----gagaagaagtctagctctgtcgcccaggctggagtgcagtggctggatcttggctcactgcaatctctgcctcccgggttcaagcgattcttctgcttcagcctc
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076094 109 + 229942017 -ttttgagaagaagtctatctctgttgcccaggctggagtgcagtggctcgatcttggctcactgcaacctctgcctcccgggttcatgcgattcttctgcctcagcctc
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220040921 110 - 229590362 tttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggccgggtctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925664 110 + 227556264 tttttgagatgaaatctagctctgttgcccaggctggagtgcagtcacttgatcttggctcactgcaacctctgcctcccgagttcaagcaattcttctgcctcagcctc
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073690 110 - 220367699 tttttgagatgaaatctagctctgtcgcccaggctggagtgcagtggcttgatcttggctcactgcaacctctgcctcccgagttcaagcgattcttctgcctcagcctc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304072 110 + 130588469 tttttgagatgaaatctagctctgttgcccaggctggagtgcagtggcttgatcttggctcactgcaacctctgcctcccgagttcaagcgattcttctgcctcagcctc
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152139443  91 + 156508116 ttttttagaaaaggtctttttatgtagccctggtt----------------atcct---tcactaagtaggctggcctcaaactcacaaagatctgcttgcctctgactc
i mm10.chr4                    I 7 C 0
s canFam3.chr5                  28617306  39 -  88915250 -----GGGGGGTGATTTGGCTTGGCCACCC--------------------------------------------CCTCCGG----------------------CAGCCTC
i canFam3.chr5                 C 0 C 0
e calJac3.chr7                 115007467   0 - 155834243 C

a score=109868.000000
s hg38.chr1_KI270714v1_random      34350 58 +     41717 ctgagtagctgggattacaggcatgcgccaccacgccccgctaatcttttgtattttt
s panTro4.chr1_GL389124_random     35342 58 +     50403 ctgagtagctgggattacaggcatgcgccaccacgccccgctaatcttttgtattttt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076203 58 + 229942017 ctgagtagctgggattacaggcatgtgccaccacgcccctctaattttttgtattttt
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041031 58 - 229590362 cggagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtattttt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925774 58 + 227556264 ctaagtagcagggattacaggcatgcgccaccacgcctggctaattttttgtattttt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073800 58 - 220367699 ctgagtagcagggattacaggcatgcgccaccacgcctggctaattttttgtattttt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304182 58 + 130588469 ctgagtagcagggattacaggcatgcgccaccacgcccggctaattttttgtattttt
i chlSab2.chr20                C 0 C 0
s mm10.chr4                    152139534 54 + 156508116 ttgagt-gttggtattaaaggcaggcatcgtcatgcctaactAAGATT---TATTTTT
i mm10.chr4                    C 0 I 856
e canFam3.chr5                  28617345  0 -  88915250 C
e calJac3.chr7                 115007467  0 - 155834243 C

a score=128796.000000
s hg38.chr1_KI270714v1_random      34408 72 +     41717 agtagagacggggtttcaccatgttgaccaggctggtctcgaactcctgacctcgtgatccgcccgcctcgg
s panTro4.chr1_GL389124_random     35400 72 +     50403 agtagagacggggtttcaccatgttgaccaggctggtctcgaactcctgacctcgtgatccgcccgcctcag
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076261 72 + 229942017 agtagagacggggtttcaccatgttgaccaagctggtctcgaactcctgacctcgtgatccgcccatctcag
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041089 72 - 229590362 agtagagacggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatccgcccgtctcgg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925832 72 + 227556264 agtagagagggggtttcaccatgttgaccaggctgatctcgaactcctggcctcgtgatccacccacctcag
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073858 72 - 220367699 agtagagagggggtttcaccatgttgaccaggctgatctcgaactcctggcctcgtgatccacccacctcag
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304240 72 + 130588469 agtagagagggggtttcaccatgttgaccaggctgatctcgaactcctgacctcgtgatccacccacctcag
i chlSab2.chr20                C 0 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617345  0 -  88915250 C
e calJac3.chr7                 115007467  0 - 155834243 C

a score=67462.000000
s hg38.chr1_KI270714v1_random      34480 38 +     41717 cctcccaaagtgctgggattaca-----gagccaccgcgccca
s panTro4.chr1_GL389124_random     35472 38 +     50403 cctcccaaagtgctgggattaca-----gagccaccgcgccca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076333 43 + 229942017 cctcccaaagtgctgggattacaggcttgagccaccgcgccca
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041161 43 - 229590362 cctcccaaagtgctgggattacaggcgtgagccactacaccca
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925904 43 + 227556264 cctcccaaagtgctgggattacaggcgtgagccactacaccca
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073930 43 - 220367699 cctcccaaagtgctgggattacaggcgtgagccactatgccca
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304312 43 + 130588469 cctctcaaagtgctgggattacaggcatgagccaccacgccca
i chlSab2.chr20                C 0 C 0
s canFam3.chr5                  28617345 34 -  88915250 CCTCCTACAGTGCACACCCGACAGAC---AGTCCCTA------
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e calJac3.chr7                 115007467  0 - 155834243 C

a score=1526219.000000
s hg38.chr1_KI270714v1_random      34518 579 +     41717 gccTCAGT------CCCACTTTTTAACCGAGGTCTACAAAGATGTGGTGAGCTGGCCT---TTCCTCCC-----CTCTCGCCCACTGTCACCATGAGTCCCCACAACTGCTGTGTCTGACCTCTATccctttcatcgtgtgccccctccatctggaatgtccttccatcctcctccctcttgaagactcagtacccatccctcctccatgagggccaccctgatttatttccc-------------ccttgctggcctcc--gccccacactgcccagggc-cactatgagcatgacctgtcatgcttggttgaccataactgattttgacctttgcct-cccccagaagactgagttcccagcgggcagggTGGTAagggttgccagacaaaatgcagttcacacag-ttcaaccggaatttcggatgaacgg---ataatgctttagtattctatatcccaaatattgcatgggacatacttatactaaaatacaacttt---tttatctgagattcaaagctagtcaaacatcccgggttttgttgttgctgtttttgttaatctggcagccctCGGGATGTCCACTATGTACTGAATGCTTCTGCTGTGCTAG
s panTro4.chr1_GL389124_random     35510 579 +     50403 gccTCAGT------CCCACTTTTTAACCGAGGTCTACAAGGATGTGGTGAGCTGGCCT---TTCCTCCC-----CTCTCGCCCACTGTCACCATGAGTCCCCACAACTGCTGTGTCTGACCTCTATCCCTTTCATCATGTGCCCCCTCCATCTGGAATGTCCTTCCATCCTCCTCCCTCTTGAAGACTCAGTACCCATCCCTCCTCCATGAGGGCCACCCTGATTTATTTCCC-------------CCTTGCTGGCCTCC--GCCCCACACTGCCCAGGGC-CACTATGAGCATGACCTGTCATGCTTGGTTGACCATAACTGATTTTGACCTTTGCCT-CCCCCAGAAGACTGAGTTCCCAGCGGGCAGGGTGGTAagggttgccagacaaaatgcagttcacacag-ttcaatcggaatttcggataaacag---ataatgctttagtattctatatcccaaatattgcatgggacatacttatactaaaatacaacttt---tttatctgagattcaaagctagtcaaacatcccgggttttgttgttgctgtttttgttaatctggcagccctCGGGATGTCCACTATGTACTGAATGCTTCTGCTGTGCTAG
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076376 577 + 229942017 gGCTCAGT------CCCACTTTTTAACCGAGGTCTACAAAGATGTAGTGAGCTGGCCT---CTCCTCCC-----CTCTCACCCACTGTCACCATGAGTCACCACACCTGCTGTGTCTGACCTCTATCCCTTTCATTGTGtgccccctccatctggaatgtccttccatcctcctccctcttgaggactcagtacccatccctcctccatgagggccaccctgagttatttccc-------------ccttgctggcctcc---ccccacactgcccagggc-cact-tgagcatgacctgtcatgcttggttgaccataactgattttgacctttgcct-cccccagaagactgagtacccagagggcagggTGGTAagggttgccagacaaaatgcagttcacacaa-ttcaatctgaatttcggataaacag---ataatgctttagtattctatatcccaaatattgcatgggacatacttatactaaagtacagcttg---tttatctgagattcaaagctagtcaaacgtcctaggtttGGTTGTTGCTGTTTTTGTTAATCTGGCCGCCCTCGGGATGTCCACTATGTACTGAATGCTTCTGCTGTGCTAG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041204 579 - 229590362 gccTCAGT------CCCACTTTTTAACCGATGTCTACAAAGATGTGGTGAGCTGTCCT---CTCCACCC-----CTCTCACCCACTGTCACCATGAGTCCCCACACCTGCTGTGTCTGACCTCTATCCCTTTCACCGTGTGCCCCCTCCATCTGGAATGCCCTTCCATCCTCCTCCCTCTTGAAGACTCAGTCCCCATCCCTCCTCCATGAGGGCCACCCTGATTTATTTCCC-------------CTTTGCTGGCCTCC--GCCCCACACTGCCCAGGGC-TGCTATGAGCATGACCTGTCATGCTTGGTTGACCATAACTGATTTTGACCTTTGCCT-CCCCCAGAAGACTGAGTTCCCAGAGGGCagggtggtaagggttaccagaagaaatgcagttcatccagtttcaatctgaatttcagataaacag---ataatgctttagtattctatatcccaaatattgcatgggacatacttgtactaaaatacagcttg---tttatctaagattcaaagctagtcaaatgtcctgggttttgttattgctgtttttgttaatctggcag-ccGCGAGATGTCCACTATGTACTGAATGTTTCCGCTGTGCTAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221925947 580 + 227556264 gccTCAGT------CCCACTTTTTAACCGATGTCTACAAAGATGTGGTGAGCTGTCCT---CTCCACCC-----CTCTCACCCACTGTCACCATGAGTCCCCACACCTGCTGTGTCTGACCTCTATCCCTTTCACCGTGTGCCCCCTCCATCTGGAATGCCCTTCCATCCTCCTCCCTCTTGAAGACTCAGTCCCCATCCCTCCTCCATGAGGGCCACCCTGATTTATTTCCC-------------CTTTGCTGGCCTCC--GCCCCACACTGCCCAGGGC-TGCTATGAGCATGACCTGTCATGCTTGGTTGACCATAACTGATTTTGACCTTTGCCT-CCCCCAGAAGACTGAGTTCCCAGAGGGCAGGGTGGTAagggttaccagaagaaatgcagttcatccagtttcaatctgaatttcagataaacag---ataatgctttagtattctatatcccaaatattgcatgggacatacttgtactaaaatacagcttg---tttttctaagattcaaagctagtcaaatgtcctgggttttgttattgctgtttttgttaatctggcagcccGCGAGATGTCCACTATGTACTGAATGTTTCCGCTGTGCTAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211073973 580 - 220367699 gcctcagt------CCCACTTTTTAACCAATGTCTACAAAGATGTGGTGAGCTGTCCT---CTCCACCC-----CTCTCACCCACTGTCACCATGAGTCCCCACACCTGCTGTGTCTGACCTCTATCCCTTTCATCGTGTGCTGCCTCCATCTGGAATGCCCTTCCATCCTCCTCCCTCTTGAAGACTCAGTCCCCATCCCTCCTCCATGAGGGCCACCCTGATTTATTTCCC-------------CTTTGCTGGCCTCC--GCCCCACACTGCCCAGGGC-TGCTATGAGCATGACCTGTCATGCTTGGTTGACCATAACTGATTTTGACCTTTGCCT-CCCCCAGAAGACTGAGTTCCCAGAGGGCAGGGTGGTAAGGGTTACCAGACGAAATGCAGTTCATCCAGTTtcaatctgaatttcagataaacag---ataATGCTTTAGTATTCtatatcccaaatattgcatgggacatacttgTACTAAAATACAGCTTG---TTTATCTAAGATTCAAAGCTAGTCAAATGTcctgggttttgttgttgctgtttttgttaaTCTGGCAGCCCGCGAGATGTCCACTATGTACTGAATGTTTCCGCTGTGCTAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304355 580 + 130588469 gccTCAGT------CCCACTTTTTAACCGATGTCTACAAAAATGTGGTAAGCTGTCCT---CTCCACCC-----CTCTCACCCACTGTCACCATGAGTCCCCACACCTGCTGTGTCTGACCTCTATCCCTTTCGTCGTGTGCCCCCTCCATCTGGAATGCCCTTCCATCCTCCTCCCTCTTGAAGACTCAGCCCCCATCCCTCTTCCATGAGGGCCACCCTGATTTATTTCCC-------------CTTTGCTGGCCTCC--GCCCCACACTGCCCAGGGC-TGCTATGAGCATGACCTGTCATGCTTGGTTGACCATAACTGATTTTGACCTTTGCCT-CCCCCAGAAGACTGAGTTCCCAGAGGGCagggtggtaagggttaccagatgaaatgcagttcatccagtttcaatctgaatttcagataaacag---ataatgctttagtattctatatcccaaatattgcatgggacatacttgtactaaaatacagcttg---tttatctaagattcaaagctagtcaaatgtcctgggttttgtTGTTGCTGTTTCTGTTCATCTGGCAGCCCGCGGGATGTCCACTACGTACTGAATGTTTCTGCTGTGCTAG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115007467 579 - 155834243 GCCTAAGT------CCTACTTTTTAATCGAGGTCTACAAGGATGTGGTGAGCCGGCCTCTACTCCACCA-----CTCTCATCCACTGTCACCGTGAGTCCTCACACCTGC--TGTCTGACCTCTATCCCTTTCATAGTGAGCCCCCTCCATCTGGAATGCCCTTCCATCTTCCTCCCTCTTGAAGACTCAGAACCCAACACTCCTCCATGAGAGCCACCCTGATTTATTTTCC-------------CCTTCCTGGCCTCT--GCCCCACACTGCCCAGGGC-CAGTGTGTGCATGGCCTGTCATGCTTGGTTGACCATAACTGATTTTGACCTTTGCCT-CCGCGAGAAGACTGAGTTCCCCGAGGGCTGGGTGGTAagggttgccagacaaaatacagttcacccag-ttcaatctgaatttcagataaacaa---ataatgctttagtattctatatctcaaatattgcatgggacatacttgtacgaaaatacagctca----ttatctgagatttaaagctagtccaacatcctgggttttgttgttgccgtttttattaatctggcagccttCCGGATGTCCGCCATGTACTGAACGCTTCTGCTGCGCTAG
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28617379 581 -  88915250 TCCTCAGTAAATGGCCCACATTTTCACCAAGGTCTATGAGGATGTGGTGATCTGGCCT---CTTATCTTTCAGGCCCTGACCCACCGTCACTGTGAGTCCTCAAACCttc--tgtcttacctgtatagctttgattaggtccctcctctatctggaatgcccttccttcctcctccct----aagactcagtccagatccctcttccatgaggcctgccctg----atttccctgggcagagcaggcctttcctgcctctgtgccccatatggccctaggctcactccatggactgtttgtcgtactccatggaacataactaattctggcttctgcctccccccaggagactaaattcccagaaggtggagTAGt-agggttgccagataaaacacaagatacccag-ttaattctgaatttcagagaaacgggaagtcattttctaataaagtatatcccaaacaaagcatgggacatatttatactaaaatattatttgcggtttatctaag-ttaaaattcatttggatatcctg-------------------tcggtactctgacaactctaCAGGCGgccaccattcacc-agcgcttctggtgtgctgg
i canFam3.chr5                 C 0 I 95
e mm10.chr4                    152139588 856 + 156508116 I

a score=21161.000000
s hg38.chr1_KI270714v1_random      35097 9 +     41717 CTCTGGGCT
s panTro4.chr1_GL389124_random     36089 9 +     50403 CTCTGGGCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076953 9 + 229942017 CTCTGGGCT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041783 9 - 229590362 CTCTGGGCT
i rheMac3.chr1                 C 0 I 80
s macFas5.chr1                 221926527 9 + 227556264 CTCTGGGCT
i macFas5.chr1                 C 0 I 545
s papAnu2.chr1                 211074553 9 - 220367699 CTCTGGGCT
i papAnu2.chr1                 C 0 I 16
s chlSab2.chr20                125304935 9 + 130588469 CTCTGGGCT
i chlSab2.chr20                C 0 I 16
s calJac3.chr7                 115008046 9 - 155834243 CTCCCGGCC
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617960 95 -  88915250 I

a score=35938.000000
s hg38.chr1_KI270714v1_random      35106 22 +     41717 ACGGCACTGGCAAGAAGGttct
s panTro4.chr1_GL389124_random     36098 22 +     50403 ACGGCACTAGCAAGCAGGttct
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076962 22 + 229942017 GTGGCAGTAGCAAGCAGGttct
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041872 22 - 229590362 ATGGCACTAGCAGGCAGGttct
i rheMac3.chr1                 I 80 C 0
s papAnu2.chr1                 211074578 22 - 220367699 ATGGCACTAGCAGGcaggttct
i papAnu2.chr1                 I 16 C 0
s chlSab2.chr20                125304960 22 + 130588469 ATGGCACTAGCAGGCAGGttct
i chlSab2.chr20                I 16 C 0
s calJac3.chr7                 115008055 22 - 155834243 ATGGCGCTAGCAGGCAGGttcc
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617960 95 -  88915250 I
e macFas5.chr1                 221926536 545 + 227556264 I

a score=455188.000000
s hg38.chr1_KI270714v1_random      35128 210 +     41717 tctatttttattt-ttatttttgagacggagtctttctctgtcatccaggctggaatgcaatggcgcaatctcagctcactgcaccctctgcctcctgggttcaagccattctcctgcctgagcctcccaaacagctgggactacaggcatgtgccaccacgcctggctaatttttgtatttttagtagaaacccagttttgccatcttgg
s panTro4.chr1_GL389124_random     36120 210 +     50403 tctttttttattt-ttatttttgagacggagtctttctctgtcatccaggctggaatgcaatggcgcagtctcagctcactgcaccctctgcctcctgggttcaagccattctcctgcctgagcctcccaaacagctgggactacaggcatgtgccaccacgcctggctaatttttgtatttttagtagaaactcagttttgccatcttgg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224076984 209 + 229942017 tct-tttttattt-ttatttttgagacggagtcttgctctgtcatccaggctggaatgcaatggcgcaatctcagctcactgcaacctctgcctcctgggttcaagccattctcctgcctcagcctcccaagcagctgggactacagtcatgtgccaccatgcctggctaatttttgtatttttagtagaaatacagtttcgccatcttgg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220041894 210 - 229590362 tctttttttattt-ttatttttgagactgagtcttgctctgtcatccaggctggaatgcaatggctcaatctcagctcactgcaacctctgcctcccaggttcaagccattcttctgcctcagcctcccaagcatctgggactacaggcatgtgccaccacgcctggctaatttttgtatttttagtagaaacccagtttcgccatcttgg
i rheMac3.chr1                 C 0 I 406
s macFas5.chr1                 221927081 201 + 227556264 --tttatttatttatttattttgagacagggtcttgctctgttgcccaggctagagtgcagtggcacaatcttggctcactgcagcctccacctcctgggttcaagttattcttctgcctcagcctcctgagtagctgggactacaggcatgtgccaccaagcccagttaatttttgtatttttagtagagatgaggtctttc--------
i macFas5.chr1                 I 545 C 0
s papAnu2.chr1                 211074600 210 - 220367699 tctttttttattt-ttatttttgagactgagtcttgctctgtcatccaggctggaatgcaatggctcaatcttagctcactgcaacctctgcctcccaggttcaagccattcttctgcctcagcctcccaagcatctgggactacaggcatgtgccaccatgcctcgctaatttttgtatttttagtagaaacccagtttcgccatcttgg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125304982 210 + 130588469 tctttttttattt-ttatttttgagactgagtcttgctctgtcatccaggctggaatgcaatggctcaatctcagctcactgcaatctctgcctcccaggttcaagccattcttctgcctcagcctcccaagcatctgggactacaggcatgtgccaccacgcctggctaatttttgtatttttagtagaaacccagtttcgccatcttgg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115008077 206 - 155834243 tctttttttattt-----ttttgagacagagtcttgctctgtcacctaggctggagtgcaatggagcgatctcggctcactgcaacctccacctcccgggttcaagccattcttctgcctcagcctcccaagtatctgggactacaggaatgtgccaccacgcccagctaatttttgtatttttagtagaaactcagtttcgccatgttgg
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617960  95 -  88915250 I

a score=32194.000000
s hg38.chr1_KI270714v1_random      35338 14 +     41717 ccaggctggtctca
s panTro4.chr1_GL389124_random     36330 14 +     50403 ccaggctggtctca
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224077193 14 + 229942017 ccaggctggtcttg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220042510 14 - 229590362 ccaggctggtctcg
i rheMac3.chr1                 I 406 C 0
s macFas5.chr1                 221927282 14 + 227556264 ccaggctggtctcg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211074810 14 - 220367699 ccaggctggtctca
i papAnu2.chr1                 C 0 I 402
s chlSab2.chr20                125305192 14 + 130588469 ccaggctggtctca
i chlSab2.chr20                C 0 I 402
s calJac3.chr7                 115008283 14 - 155834243 ccagtctggtctgg
i calJac3.chr7                 C 0 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617960 95 -  88915250 I

a score=148827.000000
s hg38.chr1_KI270714v1_random      35352 64 +     41717 aactcctgagctcaagtgatccgcctgtctcggcctcccaaagtgctgggattacaggtgtgag
s panTro4.chr1_GL389124_random     36344 64 +     50403 aactcctgaactcaagtgatccgcctgtctcggcctcccaaagtgctgggattacaggtgtgag
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224077207 64 + 229942017 aactcctgagcttaagtgatctgcccttctcggcctcccaaagtgctgggattacaggtgtgaa
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220042524 64 - 229590362 aactcctgagctcaagtgattcgcctgtctcggcctcccaaagtgctgggattacaggcatgag
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221927296 64 + 227556264 aactcctgagctcaagtgattcgcctgtctcggcctcccaaagtgctgggattacaggcatgag
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211075226 64 - 220367699 aactcctgagctcaagtgatccgcctgtctcggcctcccaaagtgctgggattacaggcgtgag
i papAnu2.chr1                 I 402 C 0
s chlSab2.chr20                125305608 64 + 130588469 aactcctgagctcaagtgatccacctgtctcggcctcccaaagtgctgggattacaggcgtgag
i chlSab2.chr20                I 402 C 0
s calJac3.chr7                 115008297 63 - 155834243 aattcctgacctcaagtgatccatctgcttcgg-ctcccaaagtgttgggattacaggggtgag
i calJac3.chr7                 C 0 I 406
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617960 95 -  88915250 I

a score=449807.000000
s hg38.chr1_KI270714v1_random      35416 195 +     41717 ccactgcgcccggccATCAACTA-----------TTACTGTGACCATCAACTGAGATTACACCGGTAAGGCACCTAGCAGGGGACCTGCCAGAATCAGAATTCAGTCAATGGTGCAGCTACAGCTGGGGAGGCTCACAGATGGAGCTG---------GGACTCTGTGCCATCACCCATAGTCCCACaacagaggcacagactcagctctctcctc
s panTro4.chr1_GL389124_random     36408 195 +     50403 ccactgcgcccggccATCAACTA-----------TTACTGTGACCATCAACTGAGATTACACCGGTAAGGCACCTAGCAGGGGACCTGCCAGAATCAGAATTCAGTCAATGGTGCAGCTACAGCTGGGGAGGCTCACAGGTGGGGCTG---------GGACTCTGTGCCATCACCCATAGTCCCACAACAGAGGCACAGACTCAGCTCTCTCCTC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224077271 195 + 229942017 ccaccgcgtccggccCTCAACTA-----------TTACTGTGACCATCAACTGAGATTACACCGGTAAGGCACCTAGCAGGGGACCTGCCAGAATCAGAATTCAATCAATGGTGCAGCTGCAGCTGGGGAGGCTCACAGGTGGGGCTG---------GGACTCTGTGCCATCACCCATAGTCCCACaacagaggcacagactcagctctctcctg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220042588 215 - 229590362 ccaccgtgtccagccATCAACTATTTTTATTAATttactgtgaccatcaactgagattacaccggtaaggcacctagcaggggacctgccagaatcagaattcaatcaatggtaCAGCTGCAGCTGGGGAGGCTCACAGGTGGGGCTGGAGGGCCCCGGACTCTGTGCCATCACCCATAGTCCCACaacagaggcacagactcagctgtctcctc
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221927360 215 + 227556264 ccaccgcgtccggccATCAACTATTTTTATTAATttactgtgaccatcaactgagattacaccggtaaggcacctagcaggggacctgccagaatcagaattcaatcaatggtaCAGCTGCAGCTGGGGAGGCTCACAGGTGGGGCTGGAGGGCCCCGGACTCTGTGCCATCACCCATAGTCCCACAACAGAGGCACAGACTCAGCTGTCTCCTC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211075290 212 - 220367699 ccaccgcatccggccatcaactattt---ttaatttactatgaCCATCAACTGAGATTACTCCGGTAAGGCACCTAGCAGGGGACCTGCCAGAATCGGAATTCAATCAATGGTACAGCTGCAGCTGGGGAGGCTCACAGGTGGGGCTGGAGGGCCCCGGACTCTGTGCCATCACCCATAGTCGCACAACAGAGGCACAGACTCAGCTGTCTCCtc
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125305672 213 + 130588469 ccaccacgtccggccATCAACTATTTTTATTAATttactgtgaccatcaactgagattacaccggtaaggcacctagcaggggacctgccagaatcagaattcgatcaatggtaC--TTGCAGCTGGGGAGGCTCACAGGTGGGGCTGGAGGGCCCCGGACTCTGTGCCATCACCCATAGTCCCACAACAGAGGCACAGACTCAGCTGTCTCCTC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115008766 210 - 155834243 CCACCGCACTCAGCCATCAACTATTTTTATTAATTTACTGGTCACATCAAC--AGATGACACCTGTAAGGCACCTGGCAGGGCACCTGCCAGAATCAGAATTCAATTAATGCTGCAGCTGCAGCTGGGGAGGCTCACAGGTGGGACTGGAAGGCCC-AGACTCTCTGCTATTCCCCACAGTCCCACAAC--aggcacagactcagttctctcctt
i calJac3.chr7                 I 406 C 0
e mm10.chr4                    152139588 856 + 156508116 I
e canFam3.chr5                  28617960  95 -  88915250 I

a score=118770.000000
s hg38.chr1_KI270714v1_random      35611 47 +     41717 ggtcacacagttggtaagtggcaCTTGAACACCCATCTGTCTGTGC-A
s panTro4.chr1_GL389124_random     36603 47 +     50403 GGCCACACAGTTGGTAAGTGGCATTTGAACACCCATCTGTCTGTGC-A
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224077466 47 + 229942017 ggtcacacagctggtaagtggcatttgaacacccatctgtctCTGC-A
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220042803 48 - 229590362 ggccacacagctggtaagtggcatttgaacacccatctgtctgTGTGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221927575 48 + 227556264 GGCCACACAGCTGGTAAGTGGCATTTGAACACCCATCTGTCTGTGTGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211075502 48 - 220367699 ggtcacacagctggtaagtggcattTGAACACCCATCTGTATGTGTGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125305885 48 + 130588469 TGCCACACAGCTGGTAAGTGGCATTTGAACACCCATCTGTCTGTGTGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115008976 48 - 155834243 ggtcacacagctggtaagtggcatttgaacacacatctgtctgTGCGA
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28618055 42 -  88915250 ggtcacacaactggtaaatggcaCTTGAG----TGTATGGTTGTGA--
i canFam3.chr5                 I 95 C 0
e mm10.chr4                    152139588 856 + 156508116 I

a score=324260.000000
s hg38.chr1_KI270714v1_random      35658 128 +     41717 TGCAGGGCCTGGCTGGCAATATGGGCATGCCGGGAGTGAAGAGATGGAATG-----------------TGTCT------CAGG-GGCTTCT----AGGGCCTAGTTCTCGGCTGTCACTGTCCCTTATCCTTGCTCTGCCAGCCCA-----------------GAGGGGGCCT
s panTro4.chr1_GL389124_random     36650 131 +     50403 TGCAGGGCCTGGCTGGCAATATGGGCATGCAGGGAGTGAAGAGATGGAATG-----------------TGTCT------CAGG-GGCTTCTC-CTAGGGCCTAGTTTTCGGCTGTCACTGTCCCTTATCCTTGCTCTGCCAGCCCA-----------------GAGGGGGCCT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224077513 131 + 229942017 TGCAGGGCCTGGCCGGCAATATGGCCATGCAGGGAGTGAAGAGCTGGAATG-----------------TGTCT------CAGG-GGCTTCTC-CTAGGGCCTAGCTTTCGGCTGTCACTGTCCCTTATCCTTGCTCTCCCAGCCCA-----------------GAGGGGGCCT
i ponAbe2.chr1                 C 0 I 239
s rheMac3.chr1                 220042851 124 - 229590362 TGCAGAGCCTGGCTGGCAATATGGGCATGCAGGGAGTGAAGAGATGGAACG-----------------TGTCT------CAGG-GGCTTCTC-CTGGGGCCTAGCTTTCGGCTGTCACTG-------TCCTTGTTCTCCCAGCCTA-----------------GAGGGGGCCT
i rheMac3.chr1                 C 0 I 1
s macFas5.chr1                 221927623 124 + 227556264 TGCAGAGCCTGGCTGGCAATATGGGCATGCAGGGAGTGAAGAGATGGAACG-----------------TGTCT------CAGG-GGCTTCTC-CTGGGGCCTAGCTTTCGGCTGTCACTG-------TCCTTGTTCTCCCAGCCTA-----------------GAGGGGGCCT
i macFas5.chr1                 C 0 I 1
s papAnu2.chr1                 211075550 124 - 220367699 TGCAGAGCCTGGCCAGCAATATGGGCATGCAGGGAGTGAAGAGATGGAACG-----------------TGTCT------CAGG-GGCTTCTC-CTGGGGCCTAGCTTTCGGCTGTCACTG-------TCCTTGTTCTCCCAGCCTA-----------------GAGGGAGCCT
i papAnu2.chr1                 C 0 I 1
s chlSab2.chr20                125305933 124 + 130588469 TGCAGAGACTGGCCGGCAATATGGGCATGCAGGGAGTGAAGAGATGGAACG-----------------TGTCT------CAGG-GGCTTCTC-CTGGGGCCTAGCTTTCGGCTGTCACTG-------TCCTTGTTCTCCCAGCCTA-----------------GAGGGGGCCT
i chlSab2.chr20                C 0 I 1
s calJac3.chr7                 115009024 131 - 155834243 TGCAAGGCCTGGCCAGCAATATGGGTATGCAGGGAGTGAAGAGATGGAATA-----------------TGTCT------CAGG-GGCTTCTC-CTAGGGCCTAGCTTCTGGCTATCACTGTCCCTTATCCTTGCTCTCCCAGCCCA-----------------GAGGGAGCCT
i calJac3.chr7                 C 0 I 1
s mm10.chr4                    152140444 142 + 156508116 TACAGAATGTGACTCACAGTA--GGTACGCAGATAGTGACG---TGGGAAG-----------------AG---------CAGGTGGCATCCCATTATGTTCTAGCTTTGGCTTGTTACTAGTCCTTATCCTTGCTTCCCCAGCCCAGCTCTGGTACCACACCTGAGTGGGGAT
i mm10.chr4                    I 856 I 2
s canFam3.chr5                  28618097 150 -  88915250 TGCAGAGCCTGGTGCATGTAGTAGGCACACAGGGAGTGAAGACAGGGAATGGAGGGAGGGTCAGTTCCTGTCTTCACTCCTGA-GGCTT-TC-CTGAGGTCCAGCTCGCAGCTGCCTTGGCCCCTCATCTCTGTTCCCC---ATAA-----------------GAGGAGTCCT
i canFam3.chr5                 C 0 C 0

a score=66987.000000
s hg38.chr1_KI270714v1_random      35786  53 +     41717 ACC---TAGGGAACAGCAGGGCTGTCCTG-----------GCTGCTGGGCTGT---------------------------------------------------TG--GGTGTGAACAGC
s panTro4.chr1_GL389124_random     36781  53 +     50403 ACC---TGGGGAACAGCAGGGCTGTCCTG-----------GCTGCTGGGCTGC---------------------------------------------------TG--GGTGTGAACAGC
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                 220042976  50 - 229590362 AC------GGGACCAGGAAAGCTGTCCTG-----------GCCGCTGGGCTGC---------------------------------------------------TG--GATGTGAACAGC
i rheMac3.chr1                 I 1 C 0
s macFas5.chr1                 221927748  50 + 227556264 AC------GGGACCAGGAAAGCTGTCCTG-----------GCCGCTGGGCTGC---------------------------------------------------TG--GATGTGAACAGC
i macFas5.chr1                 I 1 C 0
s papAnu2.chr1                 211075675  50 - 220367699 AC------GAGACCAGGAAAGCTGTCCTG-----------GCTGCTGGGCTGC---------------------------------------------------TG--GATGTGAACAGC
i papAnu2.chr1                 I 1 C 0
s chlSab2.chr20                125306058  50 + 130588469 AC------GGGGACAGGAAAGCTGTCCTA-----------GCTGCTGGGCTGC---------------------------------------------------TG--GATGTGAACAGC
i chlSab2.chr20                I 1 C 0
s calJac3.chr7                 115009156  52 - 155834243 AC----TGGGGAACAGGAGAGCTGTCCTG-----------GCTGCTGCGCTGC---------------------------------------------------TG--GATGTGAACAGC
i calJac3.chr7                 I 1 C 0
s mm10.chr4                    152140588  55 + 156508116 --AA-TTAGAGAGTACTGAATCTGCCTGG-----------GCCACTAGGCTGG---------------------------------------------------TGCAGGTTTGGACTGT
i mm10.chr4                    I 2 C 0
s canFam3.chr5                  28618247 115 -  88915250 ---ACCTGGGGAGCTGGGAATCAACCCCATGAGGTGGAGTGCTGCTGGGAAGCAGGGATGTTGGCAGGGTCACTGACTGAGCCTTGGTTTTTCTGACTTGGTAATG--GGTGTGGACACT
i canFam3.chr5                 C 0 C 0
e ponAbe2.chr1                 224077644 239 + 229942017 I

a score=310186.000000
s hg38.chr1_KI270714v1_random      35839 140 +     41717 CCAGGGTGCAGTTGCCACTGAAGGACACTAGGTGGAGCCACAACCTA----CCCCCAGACCCA-----GGAG---------AAGTTCCAGGTTGGGGGCCACGACCTATTGGGTTCCAGTTCACCTTTTGTGCCTAGGAGGC-CAATTCCTCACAGGAC
s panTro4.chr1_GL389124_random     36834 140 +     50403 CCAGGGTGCAGTTGCCACCGAAGGACACTAGGTGGAGCCACAACCTA----CCCCCAGACCCA-----GGAG---------AAGTTCCAGGTTGGGGGCCACGACCTATTGGGTTCCAGTTCACCTTTTGTGCCTAGGAGGC-CAATTCCTCACAGGAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224077883 141 + 229942017 CCAGGGTGCAGTTACCACCGAAGGACACTAGGTGGAGCCACAACCTA---CCCCCCAGACCCA-----GGAG---------AAGCTCCAGGTTGGGGGCCGCGACCTATTGGGTTCCAATTCACCTTTTGTGCTCAGGAGGC-CAATTCTTCACAGGAC
i ponAbe2.chr1                 I 239 C 0
s rheMac3.chr1                 220043026 134 - 229590362 CCAGGGTGCAGTTACCACCAAAAGACAATAGGTGGAGCCACAACCTA----CCCCCAGACCCA-----GGAG---------AAGTTCCAGGTTGGGGG------CCTCTTGGGTTCCAATTCACCTTTTGTGCCCAGCAGGC-CAATTCTTCACAGGAC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221927798 134 + 227556264 CCAGGGTGCAGTTACCACCAAAAGACACTAGGTGGAGCCACAACCTA----CCCCCAGACCCA-----GGAG---------AAGTTCCAGGTTGGGGG------CCTCTTGGGTTCCAATTCACCTTTTGTGCCCAGCAGGC-CAATTCTTCACAGGAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211075725 134 - 220367699 CCAGGGTGCAGTTACCACCAAAAGACACTAGGTGGAGCCACAACCTA----CCCCCAGACCCA-----GGAG---------AAGTTCTAGGTTGAGGG------CCTATTGGGTTCCAATTCACCTTTTGTGCCCAGGAGGC-CAATTCTTCACAGGAC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125306108 138 + 130588469 CCAGGGTGCAGTTACCACCAAAAGACACTAGGTGGAGCCACAACCTACCCCCCCCCAGACCCA-----GGAG---------AAGTTCTAAGTTGGGGG------CCTACTGGGTTCCAATTCACCTTTTGTGCCCAGGAGGC-CAGTTCTTCACAGAAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115009208 146 - 155834243 CCAGGGTGCAGTTACCACTAGGGAACACTAGGTGGAGCCACAACATA----CCCCCAGACCTATATGGGGGG---------GGGGGCGGGAGGGGGTGCCGGGTCCTATTGTGTTCCAATTCACGTTTTGTGCCCAGGAGGTGCAATTCTTCACTGGAC
i calJac3.chr7                 C 0 I 557
s mm10.chr4                    152140643  99 + 156508116 CCAGGGTGCAGTTACCAAGAACGGACACTGGGTGGAGCCATAAGCTA----CTCCC-GACCCA-----------------------------------------TCACCTG----CCCATTCAAATCT--------GTAGGT-CCATGCTGATTAGCC-
i mm10.chr4                    C 0 C 0
s canFam3.chr5                  28618362 117 -  88915250 CCAGGGCGCAGTTATCATAGTTGGACACTAGGTGGAGCCATAATCTA----GGCCCAGACACA-----AGAGCTGCCCACCGCGGTCCACAGTGTGGCTCAGAAGCTCTGGGGT-----------------------GAGGC-TGAGTCC---------
i canFam3.chr5                 C 0 C 0

a score=1000459.000000
s hg38.chr1_KI270714v1_random      35979 476 +     41717 TTGACATC--------------CTGCCCATCTACCTCCCCCAGTCTTTCACCCCGTAGAT-----CAACCACATGCTCCACCCTGCATTCATCCCTCGTTCACCCATCCAACTGCCCATCCACTTGTT----GCCTGCCCATCAACGTGCACCAGGCTA--CCCCCCTTTGCCCACCCACCCTCTTGTTCC--CAACACGACTCAG--CCCCTCTTCTGACCCCTGTCACGTGTGCCCTCTCCCTCCCTCTCACACACATCCTGAGCCCCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCACTTCCCTGAGTCCTGAGA-----CCCCAAGGCTGACTCTGACTGAGACCCCTGACTCTGCAG-CCCCCATGGACCCCCACTCACTGATTTCTC------------CTCCCTCC------------CCACTCCCTAGACACAGGGCTGCCATT-TGCTGGGGCTGATGCTGAGCCGGGCACTTCATG-ATGGTGCGGGG--AGCAGGCACCATGCCTGGTGATC
s panTro4.chr1_GL389124_random     36974 473 +     50403 TTCACATC--------------CTGCCCATCTACCTCCCCCAGTCTTTCACCCCGTA--------CAACCACATGCTCCACCCCGCATTCATCCCTCGCTCACCCATCCAACTGCCCATCCACTTGTT----GCCGGCCCATCAACGTGCACCAGGCTA--CCCCCCTTTGCCCACCCACCCTCTTGTTCC--CAACACGACTCAG--CCCCTCTTCTGACCCCTGTCACGTGTGCCCTCTCCCTCCCTCTCACACACATCCTGAGCCCCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCACTTCCCTGACTCCTGAGA-----CCCCAAGGCTGACTCTGACTGAGACCCCTGACTCTGCAG-CCCCCATGGACCTCCACTCACTGATTTCTC------------CTCCCTCC------------CCACTCCCTAGACACAGGGCTGCCATT-TGCTGGGGCTGATGCTGAGCCGGGCACTTCATG-ATCGTGTGGGG--AGCAGGCACCATGCCTGGTGATC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224078024 395 + 229942017 TTCACATC--------------CTGCCCGTCTACCTCTCCCAGTGTTTCACCCCCTAGAT-----CAACCACAT--------------------------------------------------------------GCCTATCAACGTGCACCAGGCTA--CCCCCCTTTGCCCATCCATCCTGTTGTTCC--CAACACAACTTAG--CCCCTCTTCTGACCC--GTCACGTGTGCCCTCTTCCTCCCTCTCACACACATCCTGAGACTCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCACTTCCTTGACTCCTGAGA-----CCCCAAGGCTG---------------------TCTGCAG-CCCCCATGGACCTCCACTCACTGATTTCTC------------CTCCATCC------------CCACTCCCTAGACACAAGGCTGCCATT-TGCTGGGGCTGATGCTGAGCCTGGCACTTCATG-ATGGTGCGGGG--AGCAGGCACCATGCCTGGTGATC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220043160 455 - 229590362 TTCACATC--------------CTGCCCATCTACCTCCCCCAGTCTATCACCGCCCAGAT-----CAACCACATGCTCCACCCCGCATCCATCCCTTGCTCAACCATCCAACTACCCATCCACTTGTT----GCCTGCCCATCAACGTGTACCAGGCCA--CCCCCCTTTGCCC-TCCACCCTCTTGTTCC--CAACATGACTTAG--CCCCTCTTCTGACCCCTGTCACGTGTGCCCTTTCCCTCCCTCTCACACACATCCTGAGACCCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCACTTCCCTGACTCCTGAGA----CCCCCAAGGCTG---------------------TCTGCAG-CCCCCATGAACCCTCACTCACTGATTTCTC------------CCCCGTCC------------CTACTCCCTAGACACAGGGCTGCCATT-TGCTGGGGCTGATGCTGGGCCTGGCACTTCATG-ATGGTGCGGGG--AGCAGGCAGCATGCCTGGTGATC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221927932 455 + 227556264 TTCACATC--------------CTGCCCATCTACCTCCCCCAGTCTATCACCGCCCAGAT-----CAACCACATGCTCCACCCCGCATCCATCCCTTGCTCAACCATCCAACTACCCATCCACTTGTT----GCCTGCCCATCAATGTGTACCAGGCCA--CCCCCCTTTGCCC-TCCACCCTCTTGTTCC--CAACACGACTTAG--CCCCTCTTCTGACCCCTGTCACGTGTGCCCTTTCCCTCCCTCTCACACACATCCTGAGACCCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCACTTCCCTGACTCCTGAGA----CCCCCAAGGCTG---------------------TCTGCAG-CCCCCATGAACCCTCACTCACTGATTTCTC------------CCCCGTCC------------CTACTCCCTAGACACAGGGCTGCCATT-TGCTGGGGCTGATGCTGGGCCTGGCACTTCATG-ATGGTGCGGGG--AGCAGGCAGCATGCCTGGTGATC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211075859 456 - 220367699 TTCACATC--------------CTGCCCATCTACCTCCCCCAGTCTATCACCCCCCAGAT-----CAACCACATGCTCCACCCCGCATCCATCCCTCGCTCAACCATCCAACTACCCATCCACTTGTT----GCCTGCCCATCAACGTGTACCAGGCCA--CCCCCCTTTGCCC-TCCACCCTCTTGTTCC--CAACATGACTTAG--CCCCTCTTCTGACCCCTGTCACGtgttccctttccctccctctcacaCACATCCTGAGACCCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCATTTCCCTGACTCCTGAGA---CCCCCCAAGGCTG---------------------TCTGCAG-CCCCCATGGACCCTCACTCACTGATTTCTC------------CCCTGTCC------------CTACTCGCTAGACACAGGGCTGCCATT-TGCTGGGGCTGATGCTGGGCCTGGCACTTCATG-ATGGTGCGGGG--AGCAGGCAGCATGCCTGGTGATC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125306246 456 + 130588469 TTTACATC--------------CTGCCCATCTACCTCCCCCAGTCTATCACCCCCCAGAT-----CAACCACATGCTCCACCCTGCATCCATCCCTGGCTCAACCATCCAACTACCCATCCACTTGTT----GCCTGCCCATCAACGTGTACCAGGCCA--CTCCCCTTTGCCCATCCACCCTCTTGTTCC--CAACACGACTTAG--CCCTTCTTCTGACCCCTGTCACGTGTGCCCTTTCCCTCCCTCTCACACACATCCTGAGACCCTCCCAGCTGGCATCTCCCTGTCCCTAAAGCCCTGGTTCTCTGTCCACTTCCCTGACTCCTGAGA----CCCCCAAGGCTG---------------------TCTGCAG-CCCCCATGGACCCTCACTCACTGATTTCTC------------CCCCGTCC------------CCACTCCCTAGACACAGGGCTGCCATT-TGCTGGGGCTGATGCTGGGCCTGGCACTTCATG-ATCGTGCGGGG--AGCAGGCAGCATGCCTGGTGATC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115009911 454 - 155834243 TTCACATC--------------CTCCCCATCTACCTCCCCCAGTCTATCAGCCCCCAGAT-----CAACCACATGCTCAAACCCATGTCCACCCCTCGCTCACCCATTCAACCTCTCATCCACTTGTT----CCCTGCCTATGAATGTCCATCAGGCCACCCCCCCCTTTGCCCATCCACCCTC---TTCC--CAACATGACTTAG--ACC-TCTTCTGCTCCCCATCATGTGTGCCCTCTCCCTCCCTCTCACACACATCCTGAGACCCTCCCGGCCAGCATCTTCCTGTCCCCAAAGTCCTGGTTCTGTGTCCACTTCCCTGATTCCTGAGA-----CCCCAAGGCTA---------------------TCTGCAGCCCCCCACGGACCCCCACTCACTGATTTCTC------------CTCCCTCT------------ACACTCCCTAGACACAGTGCTGCCATT-TGATGGGGCTGATGCTGGGCCTGGCACTTCATG-GTGGTACAGAG--AGCAGGCACCATGCCTGGTGGTC
i calJac3.chr7                 I 557 C 0
s mm10.chr4                    152140742 428 + 156508116 TTGACATCACAGGGCTCTTCAGTCATTCATATTCCCACCGAAAATTATT-CTCCCTAGCTAAAAACATCCAGAGTGTCAATCAGGC-----------------CCGTCAAGCTCCTCATTCGTCCATGAGGAGCTTGTCCCTCCTCCTCTATTTGGCTA----------TGTAC---CATCTCCTTGTCACTGCAACATGAGTTAGGTCCCCGCTCCTA--CCAAAACAAGCATGCCTTCCTCTCCTTACCCAC---CATC--------CCCCCAGC--------------------AGCCCCTCTTCTCTACCTACAGGCCTGAG--CTGAAGCCTCTCTCCCAGGTTG---------------------TAT-----CCCCCTCTGACCCC--TTTGCTTGTCTCTTGACTCCTTGGGGATCCTTCT------------CTGACCCCT-GACACAAGGCTGTCGCT-TGCT-GATCTCATGTTGAATCTGGCTCTTTA-G-ATGTCTGGGGGCAAACAGGTACCAGGACAGGTTGTC
i mm10.chr4                    C 0 I 421
s canFam3.chr5                  28618479 321 -  88915250 ---------------------------CACTGTGCTGGATCAGCCCTCTGTGCCCCAGTA-----AGAACAC--------------------------------------------------TTCGTC----ACCTGACTA----------------AA----------TGTCTGACCATCCTTCTGTCTC--C----TGATCTGG--TC--TCTTC------------------------------------------CCCTTGGACCCTCCCAGCTGACTTCTCCCTGTCCCTAAAACCCAGGTTC-CTGTGCACTTCCCTGAC-CCTGGG------CCCTCAGGCCA---------------------TCTGCAG-CCCTCACCAGCCAC--CTCCCTGCTCTCTC------------CTTACTCCTGACATGGGTGTCCCCACCCCAGACAC--------TATTGTCCTGGGCCTGATGCCAAGCATGGCACGTCACGCATTTGGGGTGG--AGCAGGGACGATGCCTGGCCGCC
i canFam3.chr5                 C 0 C 0

a score=116814.000000
s hg38.chr1_KI270714v1_random      36455 52 +     41717 CAGAGGGGGTCCCGTCAACACAGATG---------------------AGGGAGACAGAAGACCCAGCTACGTA--------------
s panTro4.chr1_GL389124_random     37447 52 +     50403 CAGAGGGGGTCCCGTCAACACAGATG---------------------AGGGAGACAGAAGACCCAGCTACGTA--------------
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224078419 52 + 229942017 CAGAGGGGGTCCCGTCGACACAGATG---------------------AGGGAGACAGAAGACTCAGCTACGTA--------------
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220043615 52 - 229590362 CAGAGAGGGTCCCGTCGACACAGATG---------------------AGGCAGACAGAAGACCCAGCTACGTA--------------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221928387 52 + 227556264 CAGAGAGGGTCCCGTCGACACAGATG---------------------AGGCAGACAGAAGACCCAGCTACGTA--------------
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211076315 52 - 220367699 CAGAGAGGGTCCCGTCGACACAGATG---------------------AGGCAGACAGAAGACCCAGCTACGTA--------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125306702 52 + 130588469 CAGAGAGGGTCCCGTCGACACAGATG---------------------AGGCAGACAGAAGACCCAGCTACGTA--------------
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115010365 52 - 155834243 CAGAGGGGGTCCTGTCAACACAGATG---------------------AGGAAGACAGAAGACTCAGCCACGTA--------------
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28618800 78 -  88915250 ---------CTCTGTCTCCCCACCTGTGTGGGGGCAATGGTGCTTAAGGGCCAACATGGCACCCAGTGATAGAGGATCGCCCACACG
i canFam3.chr5                 C 0 C 0
e mm10.chr4                    152141170 421 + 156508116 I

a score=1428617.000000
s hg38.chr1_KI270714v1_random      36507 481 +     41717 TCTATCT-TCAGAAACATGCTGGCTCGTGGCTGCCAGCCTCCACACCCCAGCGCCAGCGTCACCCC-----------------CACACACACTCACATACTGCTGCATC-AGA-ACAGGCTGTTGAATATTTCATGACCGACGCTCAGCGGCCTAAATTTTTCACCCC------------------GTAACCAAGGCACAGTGAGTGCCGGGGTCTTGGGGATCAGGGGCT-GGTGC------------GGGCCCACTGGGTTCTTTCTGCAGAGGCCCATGGCGGTGTACACAGCGGGTGGGGGGCCAGACCTGCAGTGAGCTCTGCTCTCTCAGCACTCCCTACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------CGGAGAAGGTCTGAGAAGCTGGCATCAAGCAGGATCTGAGCAGCAGGGGGAAGTGGTACCCACGGCCTCCTGCAGGGCCGCTGGCTGGCACTCCCAGCCCAagttcctggcacggaat--gagccctcagtaagtgctggAGCTCATCACC
s panTro4.chr1_GL389124_random     37499 481 +     50403 TGTATCT-TCAGAAACATGCTGGCTCGTGGCTGCCAGCCTCCACACCCCAGCGCCAGCGTCACCCC-----------------CACACACACTCACATGCAGCTGCATC-AGA-GCAGGCTGTTGAATATTTCATGACCGACGCTCAGCGGCCTAAATTATTCACCCC------------------GTAACCAAGACACAGTGAGTGCCGGGGTCTTGGGGATCAGGGGCT-GGTGG------------GGGCCCACTGGGTTCTTTCTGCAGAGGCCCACGGCGGTGTGCACAGCTGGTGGGGGGCCAGACCTGCAGTGAGCTCTGCTCTCCCAGCACTCCCTACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------CAGAGAAGGTCTGAGAAGCTGGCATCAAGCAGGATCTGAGCAGCAGGGGGAAGTGGTACCCACGGCCTCCTGCAGGGCCGCTGGCTGGCACTCCCAGCCCAAGTTCCTGGCACGGAAT--GAGCCCTCAGTAAGTGCTGGAGCTCATCACC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224078471 482 + 229942017 TCTATCT-TCAGAAACATGCTGGCTCGTGGCTGCTAGCCTCCACACCCCAGGGCCAGCGTCACCCC-----------------CATGCACACTCACATGCTGGTGCATCGGGA-ACAGGCTGTTTAATATTTCATGACCGACACTCAGCGGCCTAAATTATTCACCCC------------------GTAACCAAGGCACAGTGAGTGCTGGGGTCTTGGGGATCAGAGGCT-GGTGG------------GGGCCCACTGGGTTCTTTCTGTAGAGGCCCACGGCGGTCTGCACAGCTGGTGGGGGGCCAGACCTGCAGTGAGCTCTGCTCTCCCAGCACCCCCCACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------TGGAGAAGGTCTGAGAAGCTGGCACCAAGCAGGATCTGAGCAGCAGGGGGCAGTGGTACCCACAGCCTCCTGCAGGGCCGCTGGCTGGCACTCCCAGTCCAagttcctggcacagaat--gagccctcagtaagtgctggAGCTCATCACC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220043667 480 - 229590362 TCTATGT-TCAGAAACATGCTGGCTCATGGCTGCCGGCCTCCACACCCCAGTGCCAGCATCACCCC-----------------CACGCACACTCACATGCTGGTGCATC-AGG-ACAGGCTGATTAATATTTCATGACCAACACTCAGCGGCCTAAATTATTCACCCC------------------GTAACCAAGGCACAGTGAGTACCGGGGTCTTGGGGATTGGGGGCC-GGTGG------------GGGCCCACTGGGTTCTTTCTGTAGAGGCCCACAGTGGTGTGCACAGCT-GCGGGGGGCCAGACCTGCAGTGAGCTCTGCTCTCCCAGCACCCCCGACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------CGGAGAAGGTCTGAGAAGCTGGCACCAAGCAGGATCTGAGCAGCAGGGGGCAGTGGTACCCACAGCCTCCTGCAGGGCTGCTGGCTGGCAATCCCAGCCCAagttcctggcacagaat--gagccctcagtaagtgctggAGCTCATCACC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221928439 480 + 227556264 TCTATGT-TCAGAAACATGCTGGCTCATGGCTGCCGGCCTCCACACCCCAGTGCCAGCATCACCCC-----------------CACGCACACTCACATGCTGGTGCATC-AGG-ACAGGCTGATTAATATTTCATGACCAACACTCAGCGGCCTAAATTATTCACCCC------------------GTAACCAAGGCACAGTGAGTACCGGGGTCTTGGGGATTGGGGGCC-GGTGG------------GGGCCCACTGGGTTCTTTCTGTAGAGGCCCACAGTGGTGTGCACAGCT-GCGGGGGGCCAGACCTGCAGTGAGCTCTGCTCTCCCAGCACCCCCGACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------CGGAGAAGGTCTGAGAAGCTGGCACCAAGCAGGATCTGAGCAGCAGGGGGCAGTGGTACCCACAGCCTCCTGCAGGGCTGCTGGCTGGCACTCCCAGCCCAagttcctggcacagaat--gagccctcagtaagtgctggAGCTCATCACC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211076367 480 - 220367699 TCTATGT-TCAGAAACATGCTGGCTCGTGGCTGCCGGCCTCCACACCCCGGTGCCAGCATCACCCC-----------------CACGCACACTCACATGCTGGTGCATC-AGG-ACAGGCTGATTAATATTTCATGACCAACACTCAGCAGCCTAAATTATTCACCCT------------------GTAACCAAGGCACAGTGAGTGCCGGGGTCTTGGGGACTGGGGGCC-GGTGG------------GGGCCCACTGGGTTCTTTCTGCAGAGGCCCACAGTGGTGTGCACAGCT-GCGGGGGTCCAGACCTGCAGTGAGCTCTGCTCTCCCAGCACCCCCGACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------CGGAGAAGGTCTGAGAAGCTGGCACCAAGCAGGATCTGAGCAGCAGGGGGCAGTGGTACCCACAGCCTCCTGCAGGGCTGCTGGCTGGCACTCCCAGCCCAAGTTCCTGGCACAGAAT--GAGCCCTCAGTAAGTGCTGGAGCTCGTCACC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125306754 481 + 130588469 TCTATGT-TCAGAAACATGCTGGCTCATGGCTGCCAGCCTCCACACCCCAGTGCCAGCATCACCCC-----------------CACGCACACTCACATGCTGGTGCATC-AGGAACAGGCTGATTAATATTTCATGACCAACACTCAGCGGCCTAAATTATTCACCCT------------------GTAACCAAGGCACAGTGAATGCCGGGGTCTTGGGGACTGGGGGCC-GGTGG------------GAGCCCACTGGGTTCTTTCTGCAGAGGCCCACAGTGGTGTGCACAGCT-GCGGGGGGCCAGACCTGCGGTGAGCTCTGCTCTCCCAGCACCCCCGACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------TGGAGAAGGTCTGAGAAGCTGGCACCAAGCAGGATCTGAGCAGCAGGGGGCAGTGGTACCCACAGCCTCCTGCAGGGCCGCTGGCTGGCACTCCCAGCCCAagttcctggcacagaat--gagccctcagtaagtgctggAGCTTGTCACC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115010417 472 - 155834243 CTTATCT-TCAGAAACATGCTGGCTTGTGACCTCCAGCCTCCACATCCCAGTGCCAGTGTCACCCC-----------------CACGCACACTCACACGCTG-TGCATC-AGGAACAGGCTGTTTAATATTTCATGACCAACACTCAGCGGCCTAAATTATTCACCCC------------------GTAACCAAGGCACAGTGAGTGCCAGGGTCCTGGGGCTCGGGGGCT-GGTG-------------GGGCACACTGGGTTCTTTCTGCAGAGGCCCATGTCGGTGTG-ACAGCT--AGGTGGGGTAGACCTGCGGTGAGCTCTGCTCTCCCAGCACCCCCCACTTGGCAGAGATCCATGACCCAGGGGTGCCCAGCCAGC----------CAGAGAAGGTCTGAGAAGCTGGCACCAAGCAGGATCTGAGCAGCAGGAGGCAGTGGTACCCACAGCCTCCTGCAGGGCTGCTGGCTGGCACTC-----CCAagttcctggcacagaat--aagccttcagtaagtgctggAGCTTGTCACC
i calJac3.chr7                 C 0 I 302
s mm10.chr4                    152141591 444 + 156508116 tctctctctcAGAACCCTGATGGTTCATGGCT-CTAGCCTACA-ATCCCAGCGCCATCCTCGCCCC-----------------CACACA----------CTGGTGTGTC-GGGAACAGCCTGCTGAATATTTCATGACCGACACTCAGCAGCCTGAATTATTCACCCCCCCTCAATCTCCCCTTCTGTACCCAAGGCACAGTGAGTGCTGGGGTCCTGGGGATTGAAAGTCAAGTGGGGAGACC-CCTAGGACTTGCTGGGTTTTCAGGGTGGGAGA----GGCAGTTTACACAACA--AAGAAAGCTGGACTCACTGTGAGCCTTGCCATTTCAGCACCTTCTAGTTGGCAGGTAGCCACCATCTAGGAGTATCCA-------------------------------------GAACCTAGAAGGAGCTGGGCAGCAGAAGGCATTGGTACCCACATCCTCCCGCC-AGCTGCTAGCTGTCACTCCCAG--CAGAGCCTTGGCACAGAGTAAAAGTCCCC-----------------------
i mm10.chr4                    I 421 C 0
s canFam3.chr5                  28618878 510 -  88915250 CCTCTTC-CCAGGAACCCTCTGGCTTGCAGCCACCAGCCTCCATACCCCACTGCCACCATCGCCCCCCCTCCCCACGCATTCACATTCACATTCACATACTGATGTGAC-AGTAACAGCCTGTTTAATATTTCATGACCAACACTCAGTGGCCTGAATTATTCACCTC------------------GTAACCAAGGCACAGTGAGTGCTGGGGTCCTGGGGATCAGAGGCT-GAGGGTGCCACCACCCAGGACCCACTGAGGTCTCTCTGGGGAGGCCTAAGGCAACATGCAGAACT--TGGGGCACCAGTTCTGCCAGGATCCCTGCCCTCG-AGCACCCCCTGCTTGGAAGGTATCCATGGTTCAGGGGTGTCCAGCCAGCCTGGGAAGGTCTGAGAAGGTCTGAGAAGCTGGCACAGAGCAGGACCTGAGCAGGAGGGGGCAGTCATGGCCA-------CTGCCAGGCCAGCGGCTGCCACCCTTATCTGGAGACCCTGGGACAGAGG--AAGCTTCCA-TAAATGCTCCAGCTTATCACC
i canFam3.chr5                 C 0 C 0

a score=273598.000000
s hg38.chr1_KI270714v1_random      36988 116 +     41717 ATTCTCATTAGTATTCCACCATCTGCACTCATGCGCCCCATTATGGAGTCAGAGCCTCCAGCTTGGAATACCCCAGAAC-ATGAGGCAGATATGCTGTTGGGC-TGGGTGGGAAGGGG--
s panTro4.chr1_GL389124_random     37980 116 +     50403 ATTCTCATTAGTATTCCACCATCTGCACTCATGCGCCCCATTATGGAGTCAGAGCCTCCAGCTTGGAATACCCCAGAAC-ATGAGGCAGATATGCTGTTGGGC-TGGGTGGGAAGGGG--
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224078953 116 + 229942017 ATTCTTATTAGTATTTCACCATCTGCACTCATGTACCCCATTATGGAGTCAAAGCCTCCAGCTTGGAATACCCCAAAAC-ATGGGACAGATACACTGATGGGC-TGGGTGGGAGGGGA--
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044147 114 - 229590362 ATTCTTATTAGTATTT--GCATCTGCACTCATGCGCCCCATTATGGAGTCAGAGCCTCCAGCTTGGAATACCCCAGAAC-CTGGGGCAGATGTGCTGATGGGC-TGGGTGGGAGGGGG--
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221928919 114 + 227556264 ATTCTTATTAGTATTT--GCATCTGCACTCATGCGCCCCATTATGGAGTCAGAGCCTCCAGCTTGGAATACCCCAGAAC-CTGGGGCAGATGTGCTGATGGGC-TGGGTGGGAGGGGG--
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211076847 114 - 220367699 ATTATTATTAGTATTT--GCATTTGCACTCGTGCGCCCCATTATGGAGTCAGAGCCTCCACCTTGGAATACCCCAGAAC-CTGGGGCAGATATGCTGATGGGC-TGGGTGGGAGGGGG--
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125307235 114 + 130588469 ATTCTTATTAGTATTT--GCATCTGCACTCATGCGCCCCATTATGGAGTCAGAGCCTCCAGCTTGGAATAGCCCAGAAC-CTGGGGCAGATATGCTGATGGGC-TGGGTGGGAGGGGG--
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011191 115 - 155834243 ATTCTTATTAGTATTACATCCTCTGCACTCATGAGCCCCATTCTGGAGTCAGAGACTCCAGCCTGGAAGACCCCAGAAC-ATGGGGCAGATATGCTGATGGGC-TGGGTGGGA-GGGG--
i calJac3.chr7                 I 302 C 0
s mm10.chr4                    152142035  99 + 156508116 ATTATCACCAGCATGTCAACTTCTGCCCCCAAGACTGCGATTGAGGGGTGGGAG----------------GCCCAGAGC-GTGGGGCGACTCTGCTGATGGGC-CACTAGAAAGGGG---
i mm10.chr4                    C 0 N 0
s canFam3.chr5                  28619388  95 -  88915250 -------------GTTCAGTCCCTGCA-------GCCC-----TGAATTTATAGCCTCCAACTTGGGAGGCCCTGGCATAACGGGGCAGACAGGCTGAGGGGCAAGGGAGAGAAAGGGGG
i canFam3.chr5                 C 0 C 0

a score=220845.000000
s hg38.chr1_KI270714v1_random      37104 81 +     41717 TCCTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGACAAGAAGAACAATGGGCACTCTCACAGTCACTGGGGAGTATTAC
s panTro4.chr1_GL389124_random     38096 81 +     50403 TCCTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGACAAGAAGAACAATGGGCACTCTCACAGTCACTGGGGAGTATTAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079069 81 + 229942017 TCTTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGACAAGAAGAACAATGGGCACTCTCACAGTCACTGGGGAGTATTAC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044261 81 - 229590362 TCCTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGGCAAGAAGAACAATGGGCATTCTCACAGTCACTGGGGAGTATTAC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929033 81 + 227556264 TCCTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGGCAAGAAGAACAATGGGCATTCTCACAGTCACTGGGGAGTATTAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211076961 81 - 220367699 TCCTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGGCAAGAAGAACAATGGGCATTCTCACAGTCACTGGGGAGTATTAC
i papAnu2.chr1                 C 0 I 319
s chlSab2.chr20                125307349 81 + 130588469 TCCTGG-CTCAACATCCCCTTCCACCTTGGCCTGAGGGCAAGAAGAACAATGGGCATTCTCACAGTCACTGGGGAGTATTAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011306 76 - 155834243 TCCTGG-CTCAACATCCCCTTCCCCCTTGGCCTGAGGGCAAGAAAAACAGT-----TACTCTCAGTCACTCGGGAGTATTAC
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28619483 81 -  88915250 TCCTGGTCTTGGTACCCTCTTCCACTTTGGCCTGGAGGCAAGAGGGTCAG-GGGCCCCCAGGTGCTCACTGGGGAAAATTAT
i canFam3.chr5                 C 0 C 0

a score=81967.000000
s hg38.chr1_KI270714v1_random      37185 29 +     41717 AAAGATATGGATGAGCATAAGGACCAAAA
s panTro4.chr1_GL389124_random     38177 29 +     50403 AAAGATATGGATGAGCATAAGGACCAAAA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079150 29 + 229942017 AAATATATGGATGAGCATAAGGACCAAAA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044342 29 - 229590362 AAAGATATGGATGAGCATAAGGACCCAAA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929114 29 + 227556264 AAAGATATGGATGAGCATAAGGACCCAAA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211077361 29 - 220367699 aaagatatggatgAGCATAAGGACCCAAA
i papAnu2.chr1                 I 319 C 0
s chlSab2.chr20                125307430 29 + 130588469 AAAGATATGGATGAGCATAAGGACCCAAA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011382 29 - 155834243 AAAGATATGGATGAGCGGAAAGACCAAAA
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28619564 29 -  88915250 AAAACTATGGATGAGCACATGGAACAAAA
i canFam3.chr5                 C 0 C 0

a score=461853.000000
s hg38.chr1_KI270714v1_random      37214 192 +     41717 TGAAATTCCCATCAcacacctggaatccaagcacctcgggaggccaaagcaggaggactgcctgagcctaggagttcgagaccagcctgggcaacatagagaga-cctccgtctctacaaacaatacaaaaatgagccaggtgtgttggtgcacacctgtagtcccagccactcaggaggctgaggagggagg
s panTro4.chr1_GL389124_random     38206 192 +     50403 TGAAATTCCCATCAcacacctggaatccaagcacctcgggaggccaaagcaggaggactgcctgagcctaggagttcgagaccagcctgggcaacatagagaga-cctccgtctctacaaacaatacaaaaatgagccaggtgtgttggtgcacacctgtagtcccagccactcaggaggctgaggagggagg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079179 192 + 229942017 TGAAATTCCCATCAcacacttggaatccaagcaccttgggaggccaaagcaggaggactgcctgagcctaggagttcgagaccagcccgggcaacatagagaga-cccccgtctctacaaacaatacaaaaatgagccaggtgtgttggtgcacacctgtagtctcagccactcaggaggctgaggagggagg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044371 192 - 229590362 TGAAATTCCCATCAcacacctggaatccaagcaccttgggaggccaaagcaggaggactgcctgagcctaggagtttgagaccagcctgggcaacatagagaga-cctccatctctaaaaacaaaacaaaaattagccaggtgtgttggtgaacagctgtagtcccagccgctcaggaggctgaagagggagg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929143 192 + 227556264 TGAAATTCCCATCAcacacctggaatccaagcaccttgggaggccaaagcaggaggactgcccgagcctaggagttcgagaccagcctgggcaacatagagaga-cctccatctctacaaacaaaacaaaaattagccaggtgtgttggtgaacagctgtagtcccagccgctcaggaggctgaagagggagg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211077390 191 - 220367699 TGAAATTCCCATCACACACCTGGAAT-caagcaccttgggaggccaaagcaggaggactgcctgagcctaggagttcgagaccagcctgggcaacatagagaga-cccccatctctacaaacaagacaaaaattagccaggtgtgttggtgaacagctgtagtcccagccgctcaggaggctgaggagggagg
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125307459 193 + 130588469 TGAAATTCCCATCAcacacctggaatccaagcaccttgggaggccaaagcaggaggactgcctgagcctaagagttcgagaccagcctgggcaacatagagagaccccccatctctacaaacaaaacaaaaattagccaggtgtgttggtgaacagctgtagtcccagccgctcaggaggctgaggagggagg
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011411 190 - 155834243 TAAAATTCCCAt--cacgcctggaatccaagcaccttgggaggccaaagcaagaggatggcttaagcctaggagttcgagaccagcctgggcaacatagtgaga-cccctgtctctacaaacaatataaaaattagccaggtgtggtggtgcacacctgtagttccagccactcaggaggctgaggagggagg
i calJac3.chr7                 C 0 C 0
e canFam3.chr5                  28619593   0 -  88915250 C

a score=61862.000000
s hg38.chr1_KI270714v1_random      37406 24 +     41717 atcacttgagtccaagaagttgag
s panTro4.chr1_GL389124_random     38398 24 +     50403 atcacttgagtccaagaagttgag
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079371 24 + 229942017 atcacttgagtccaggaagttgag
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044563 24 - 229590362 atgacttgagtccaggaagttgag
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929335 24 + 227556264 atgacttgagtccaggaagttgag
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211077581 24 - 220367699 atgacttgagtccaggaagttgag
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125307652 24 + 130588469 atgacttgagtccaggaagttgag
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011601 24 - 155834243 atcacttgagtctaggaagttgag
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28619593 20 -  88915250 ATCAATTGATTC----AGGTGGAG
i canFam3.chr5                 C 0 C 0

a score=244405.000000
s hg38.chr1_KI270714v1_random      37430 109 +     41717 gctgcagggaactatgatcataccgctgcactccagcctgggtgtcagagcaagagcctgtctctaaaataaataaataaatgagaaaat----------------aaaCAAAATTCCCATCACT
s panTro4.chr1_GL389124_random     38422 109 +     50403 gctgcagggaactatgatcataccgctgcactccagcctgggtgtcagagcaagagcctgtctctaaaataaatcaataaatgagaaaat----------------aaacaaaaTTCCCATCACT
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079395 125 + 229942017 gctgcagggaactatgatcataccactgcactccagcctgggtgtcagagcaagatcctgtctctaaaataaataaataaataaataaataaataaataaataagaaaataaaATTTCCATCACT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044587 113 - 229590362 gctgcagtgaactatgatcacaccactgcactccagcctgggtgtcagagcaagaccctgtctctaaaataaataaataaataaataaGAACAG------------TGTCAAAATTCCCATCACT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929359 113 + 227556264 gctgcagtgaactatgatcacaccactgcactccagcctgggtgtcagagcaagaccctgtctctaaaataaataaataaataaataagaaCAG------------AAACAAAATTCCCATCACT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211077605 113 - 220367699 gctgcagtgaactatgatcacaccactgcactccagcctgggtgtcagagcaagaccctgtctctaaaataaataaataaataaataagaacag------------aaacaaaattcCCATCACT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125307676 113 + 130588469 gctgcagtgaactatgatcacaccactgcactccagcctgggtgtcagagcaagaccctgtctctaaaataaataaataaataaataagaaCAT------------AAACAAAATTCCCATCACT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011625 113 - 155834243 gctgtagtgaactatgaccacaccactgcactccagcctccgtgtcagagcaagaccctgtctctaaaataaataaatgcataaatgagaaaag------------aaaCAAAATTCCCATCACT
i calJac3.chr7                 C 0 C 0
e canFam3.chr5                  28619613   0 -  88915250 C

a score=613369.000000
s hg38.chr1_KI270714v1_random      37539 230 +     41717 AGAGAGAGGAATtaataaaagtaatattagta---aataataataatagtgatagcagccaccatttactgaa-------tgattactctgtctcaagcactgtgatgagtacaacacacacgttctctcagctggtctttgtaacaaacccacaggacaggtgttagcattgttcttccagtacagatgaggaaactgaggcacag-gagctaagatcactctgtgagaaagaggcagag
s panTro4.chr1_GL389124_random     38531 231 +     50403 GGAGAGAGGaattaataaaagtaataatagta---aataataataatagtgatagcagccaccatttactgaa-------tgattactctgtctcaagcactgtgatgagtacaacacacacgttctctcagctggtctttgtaacaaccccacaggacaggtgttagcattgttcttctggtacagatgaggaaactgaggcacagagagctaagatcactctgtgagaaagaggcagag
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079520 218 + 229942017 GGAGAGAGGaattaataaaagtaataatagta---aataataataataGTGatagcagccaccatttactgaa-------tgattactctgtctcaagcactgtgatga-------------gttctctcagctggtccttgtaacaaccccacaggacaggtgttagcattgttctcctggtacagatgaggaaactgaggcacagagagctaagatcactctgtgagaaagaggcagag
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044700 234 - 229590362 GGAGAGAGGAATtaataaaagtaataatagtaaataataataataatagtgatagcagccaccatttactgaa-------tgattactctatctcaagcactgtgatgagtacaacacacacattctctcagctggtccttgtaacaaccctacaggacaggtgttagcattgttctcctggtacagatgaagaaactgaggcacagagagctaagatcactctatgagaaagaggcagag
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929472 234 + 227556264 GGAGAGAGGAATtaataaaagtaataatagtaaataataataataatagtgatagcagccaccatttactgaa-------tgattactctatctcaagcactgtgatgagtacaacacacacattctctcagctggtccttgtaacaaccctacaggacaggtgttagcattgttctcctggtacagatgaagaaactgaggcacagagagctaagatcactctatgagaaagaggcagag
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211077718 234 - 220367699 GGAGAGAGgaattaataaaagtaataatagtaaataataataataatagtgatagcAGCCACCATTTGCTGAA-------TGATTACTCTATCTCAAGCACTGTGATGAGTACAACACACACGTTCTCTCAGCTGGTCCTTGTAACAACCCTACAGGACAGGTGTTAGCATTGTTATCCtggtacagatgaagaaactgaggcacagagagctaAGATCACTCTATGAGAAAGAGGCAGAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125307789 231 + 130588469 GGAGAGAGGAATtaataaaagtaataatagta---aataataataatTGtgatagcagccaccatttactgaa-------tgattactctatctcaagcactgtgatgagtacaacacacacgttctctcagctggtccttgtaacaaccctacaggacaggtgttagcattgttctcctggtacagatgaagaaactgaggcacagagagctaagatcactctatgagaaagaggcagag
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011738 238 - 155834243 GGAGAGAGGAATTAACAAAAGTACTAATAGGA---TATAATAATACTagtgatggcagccaccatttactgaatgattactgattactctgtctcaggcactgggatgagtacgacacacacagtctctcagctggtcctcgtaacaacctgacaggacaggtgttggcattgttctcctggtacagatgaggaaactgaggcacagagagctaacatcactctatgagaaaaaggcagag
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28619613 225 -  88915250 AGAGAGATAAAGTTATGATAGTAGTAATAATA------ACTGATAACAGTGGTAGCAGGTACGGttcatcgaa-------ggactgatatgtttcaggcactgtgctaagc-ttatacacgtgctctctcacctggtccttgcagggaccagatggggtaggtgctggcattattcccctttt-cagacaaggagactgc-gcacagaagtctaagatcgcttgatgagagagaggcagag
i canFam3.chr5                 C 0 I 16

a score=141622.000000
s hg38.chr1_KI270714v1_random      37769 58 +     41717 ccccgatttgaggctgtgtctgatgcagagcctgcttctgactccaaatgtgccacgt
s panTro4.chr1_GL389124_random     38762 58 +     50403 ccccgatttgaggctgtgtctgatgcagagcctgcttctgactccaaatgtgccacgt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079738 58 + 229942017 ccctgatttgaggctgcatctgatgcagagcctgcttctgactccaaatgtgccatGT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044934 58 - 229590362 ccccgatttgaggctgtgtctgatgcagagcctgcttccgactccaaatgtgccacgt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929706 58 + 227556264 ccccgatttgaggctgtgtctgatgcagagcctgcttccgactccaaatgtgccacgt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211077952 58 - 220367699 CCCCGATTTGAGGCTGTGTCTGATGCAAAGCCTGCTTCCGACTCCAAATGTGCCACGT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125308020 58 + 130588469 ccccgatttgaggctgtgtctgatgcagagcctgcttccgactccaaatgtgccacgt
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115011976 58 - 155834243 ccctgatttgagcctgggtctTACGCAGAGCCTGCTTCAGACTCCAAATGTGTCACGT
i calJac3.chr7                 C 0 I 315
e canFam3.chr5                  28619838 16 -  88915250 I

a score=283639.000000
s hg38.chr1_KI270714v1_random      37827 133 +     41717 ctacacccctTCTGCTCTTGGTCGGTCTGtccctctgcctccctccctccctcccaccGCACAGACCACTGCCCTTCCCCACAGACCTCACTGCTGGGAACTCAGGAACACTCTTTGACAGCTGCTGGGGCAC
s panTro4.chr1_GL389124_random     38820 129 +     50403 ctacacccctTCTGCTCTTGGTCGGTCTGTCCCTCTG----CCTCCCTCCCTCCCACCGCACAGACCACTGCCCTTCCCCACAGACCTCACTGCTGGGAACTCAGGAACACTCTTTGACAGCTGCTGGGGCAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079796 129 + 229942017 CTACACCCCTTCTGCTCTTGGTCGGTCTGTCCCTCTG----CCTCCCTCGTTCCCACTGCACAGACCACTGCCCTTCCCCACAGACCTCACTGCTGGGAACTCAGGAACACTCTTTGCCAGCTGCTGGGGCAC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220044992 127 - 229590362 ctgcactccttctgCTCTTGGTAGGTCTGTCCCGCTG----CCTCCCTCCCTTCCACCGCACAGACCACTGCCTTTCCCCGCAGACCTCACTGCTGGGAACTCAGGAACACTC--TGCCAGCTACTGGGGCAC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929764 127 + 227556264 ctgcactccttctgCTCTTGGTAGGTCTGTCCCGCTG----CCTCCCTCCCTTCCACCGCACAGACCACTGCCTTTCCCCGCAGACCTCACTGCTGGGAACTCAGGAACACTC--TGCCAGCTACTGGGGCAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211078010 127 - 220367699 CTGCACCCCTTTTGCTCTTGGTCGGTCTGTCccgctg----cctccctcccttccaccgCACAGACCACTGCCCTTCCCTGCAGGCCTCCCTGCTGGGAACTCAGGAACACTC--TGCCAGCTACTGGGGCAC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125308078 127 + 130588469 ctgcacgccttctgCTCTTGGTCAGTCTGTCCCGCTG----CCTCCCTCCCTTCCACCGCACAGTCCACTGCCCTTCCCCGCAGACCTCACTGCTGGGAACTCAGGAACACTC--TGCCAGCTACTGGGGCAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115012349 117 - 155834243 CTGCACCCCTCCTGCTCTTGGTCGGTCTGTCCCTCTG----CCTCCCTCCCTCCCATTGCACAGACCACTGCCCTTCCCC------------GCTGGGAACTCAGGAGCCCTCTTTCCCAGCTGCTGGGGCAT
i calJac3.chr7                 I 315 C 0
e canFam3.chr5                  28619838  16 -  88915250 I

a score=1187561.000000
s hg38.chr1_KI270714v1_random      37960 489 +     41717 AGCCCCGc-----------------------------------aggaggacctggctcgagtcccgtgcctttgagctgtgccacagtcttgcttcttgtctctttgtgttcccaaacccatccatgaaatgggggcaacagttgtcatcctgacctcgtgcggagtgcctgagaagtgcctgcagagccctgagcacaggcctggtgcctggcgcacagc------cattgctgaaCTTTAGGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCAGGG-GGTTCTATGGCTGGCCTGGCGTGTCCGGGTGCTGCCAAGTACGGGCCAGGCTGGGCATCATTTCTGCTGTGGGGAACACTACCTAGAGGGGAGAGAATGGGTCTTGGGGGA-----GACCTCTG-ACTCCCA--GACCCTTGCCAGCTCTAGCCCTGACC------ACAGTGACAGCTGCAGAAAAGTGCTCCCAGACCAAGCCCTTGCCCTTTGCCCCGGCTTTGACCCAAACCCT----CTTTGTAGGTCA----GAGGCGCCCTGGTGA
s panTro4.chr1_GL389124_random     38949 489 +     50403 AGCCCCGc-----------------------------------aggaggacctggctcgagtcccgtgcctttgagctgtgccacagtcttgcttcttgtctctttgtgttcccaaacccatccgtgaaatgggggcaagagttgtcatcctgacctcgtgcggagtgcctgagaagtgcctgcagagccctgagcacaggcctggtgcctggcgcacagc------cattgctgaaCTTTAGGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCAGGG-GGATCTATGGCTGGCCTGGCGTGTCCAGGTCCTGCCAAGTACGGGCCAGGCTGGGCATCATTTCTGCTGTGGGGAACACTACCTAGAGGGGAGAGGATGGGTCTTGGGGGA-----GACCTCTG-ACTCCCA--GACCCTTGCCAGCTCTAGCCCCGACC------ACAGTGACAGCTGCAGAAAAGTGCTCCCAGACCAAGCCCTTGCCCTTTGCCCCGGCTTTGACCCAAACCCT----CTTTGTAGGTCA----GAGGCGCCCTGGCGA
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224079925 489 + 229942017 AGCCCTGc-----------------------------------aggaggacctggcttgagtcccgtgtctttgagctgtgccacagtcttgcttcttgtctctctgtgttcccaaacccatccatgaaatgggggcaacagttgtcatcctgaccttgtgcagagggcctgagaagtgcttgcagagccctgagcacaggcctggtgcctggcgcacagc------cattgctgaaCTTTTGGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCAGGA-GGGTCTATGGCTGGCCTGGTGTGTCCAGGTCCTGCCAAGTATGGGCCAGGCTGGGCTTCATTTCTGCTGTGGGGAACACTACCTAGAGGGGAGAGGATGGGTCTTGGGGGA-----GACCTCTG-ACTCCCA--GACCCCTGCCAGCTCTAGCCCTGACC------ACAGTGACAGCTGTAGAAAAGTGCTCCCAGACCAAGCCCTTGCCCTTTGTCCTGGCTTTGACCCAAACCCT----CTTTGTAGGTCA----GAGACTCCCTGGCGA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220045119 523 - 229590362 AGTCCTACAGGAGGACCtgcagggagggccccggcttcgctaaaggaggacctgactcgagtcctgtgcctttgagctgtgcgacaatcttgcttcttgtctctttgtgttcccaaacccatccatgaaatgggggcaaaagtcgtcatcctgaccttgtgcggagcgcctgagaagtgcttgcagagccctgagcacgggcctggtgcctggcgcacagc------cattgctgaaCTTTATGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCAGGA-GGGCCCATGACTGGCCTCGCGTGTCCAGGTCCTGCCAAGTACGGGCCAGGCTGGGCATCATTTCTGCTGTGGGGAACACTACCTAGAGAGGAGAGGA-GGGTCTTGGGGGA-----GACCTCTG-CCTCCCA--GACCCCTGCCAGCTCTAGCCCCGACC------ACGGTGACAGCTGCAGAAAAGTGCTCCCAGACCAAGCGCTTGCTCTTTGCCCTGGCTTTGACCCAAACACT----CTTTGTAGGTCA----GAGGCTCCCTGGTGA
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221929891 523 + 227556264 AGTCCTACAGGAGGACCTGCAGGGAGGGCCCCGGCTTCGCTAAaggaggacctgactcgagtcctgtgcctttgagctgtgcgacaatcttgcttcttgtctctttgtgttcctaaacccatccatgaaatgggggcaaaagtcgtcatcctgaccttgtgcggagcgcctgagaagtgcttgcagagccctgagcacgggcctggtgcctggcgcacagc------cattgctgaaCTTTATGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCAGGA-GGGCCCATGACTGGCCTCGCGTGTCCAGGTCCTGCCAAGTACGGGCCAGGCTGGGCATCATTTCTGCTGTGGGGAACACTACCTAGAGGGGAGAGGA-GGGTCTTGGGGGA-----GACCTCTG-CCTCCCA--GACCCCTGCCAGCTCTAGCCCCGACC------ACGGTGACAGCTGCAGAAAAGTGCTCCCAGACCAAGCGCTTGCTCTTTGCCCTGGCTTTGACCCAGACACT----CTTTGTAGGTCA----GAGGCTCCCTGGTGA
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211078137 526 - 220367699 AGTCCTACAGGAGGACCTGCAGGGAGGGCCCCGGCTTCGCTAAAGGAGGACCTGGCTCGAGTCCTGTGCCTTTGAGCTGTGCCACAGTCTTGCTTCTTGTCTCTTTGTGTTCCCAAACCCATCCATGAAATGGGGGCAAAAGTCGTCATCCTGACCTTGTGCGGAGCGCCTGAGAAGTGCTTGCAGAGCCCTGAGCACGGGCCTGGTGCCTGGCGCACAGC------CATTGCTGAACTTTATGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCAGGAGGGGCCCATGACTGGCCTCGCGTGTCCAGGTCCTGCCAAGTACGGGCCAGGCTGGGCATCATTTCTGCTGTGGGGAACACTACCTAGAGGGGAGACGAGGGGTCTTGGGGGA-----GATCTCTGCCCTCCCA--GACCCCTGCCAGCTCTAGCCCCGACC------ACGGTGACAGCTGCAGAAAAGTGCTCCCAGACCAAGCGCTTGCTCTTTGCCCTGGCTTTGACCCAAACACT----CTTTGTAGGTCA----GAGGCTCCCTGGTGA
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125308205 524 + 130588469 AGTCCTACAGGAGGACCTGCAGAGGGGGCCCCGGCTTCGCTAAAGGAGGACCTGGCTCGAGTCCTGTGCCTTTGAGCTGTGCCACAGTCTTGCTTCTTGTCTCTTTGTGTTCCCAAACCCATCCATGAAATGGGGGCAAGACTCGTCATCCTGACCTTGTGCGGAGCGCCTGAGAAGTGTTTGCAGAGCCCTGAGCAAGGGCCTGGTGCCTGGCGCACAGC------CATTGGTGAACTTTATGATCCTTC---CCTGTGCCTGGGAGGACCAGCCACCGGGA-GGGCCCATGACTGGCCTCGCGTGTCCAGGTCCTGCCAAGTACGGGCCAGGCTGGGCATCATTTCTGCTGTGGGGAACACTACCTAGAGGGGAGAGGAGGGGTCTTGGGGGA-----GACCTCTG-CCTCCCA--GACCCCTGCCAGCTCTAGCCCCGACC------ACGGTGACAGCTGCAGAAAAGTGCTGCCAGACCAAGCGCTTGCTCTTTGCCCTGGCTTTGACCCAAACCCT----CTTTGTAGGTCA----GAGGTTCCCTGGTGA
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115012466 486 - 155834243 AGCCCC-Tagaagggcctgtaggata-----------------aggaggacctagttcaagtcccgtgactttgagctgtgctacagtctcacttcctgtctctttgtg-tcccaaacccatccatgaaatgggggcaacagtcgtcatcctgaccctgtgcggaacgcctgaggagtgcctgcaga-------------gactggtgcctggtgcccatc------caccgctcaaCTTTAGGGTTCTTCTTTCCTGTGTCTGGGAGGACTAGCCACCAAGA-GGGCCCATGGCTGGGCTG--------------TGCCAAGCACAGGCCTGGCTGGGTATCATTTCTGTTGTGGGGAACATAACCTAGAGGGGAGAGGATGGGTCTTGGGGGA-----GACCTTTG-AC-CCCA--GACCCCTACCAGCTCTAGCCCAGACCACAGTGACAGTGACAGCCACAGAAAAGTGCACCCAGAACAAGCCCTTGCCCTTTCCCCCGACTTTGACCCAAGCCCT----CTTTGTAGGTCA----GAGGCTCCCTGGCAA
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28619854 438 -  88915250 agccctgc----------------------------------------------------------------caagctgTGTCACTGTCTTCCCTATTGTCTC----GGTTCTCAAAGCCACCCATGGAGTGGGGGTGGTAATTGTC---------------------CACGAGATGTGCTTGGAGAGCCCTCAGCATGGGCCTGTCACCTGGCACAAACCTGGGATCATTGTTATATTTGGGGATCCCTA---CCCA---CTG--------AGCCTCTGTAG-GAG--CACTGCTGGTCTGGGGTGTCCGGGCCCAGCCAAGCACAGGTCAGGCCAGGCATTGTTTCTGCTCTGGAGA--GTCACCCAGAGGAGAGGGGCAGGGTCTCAGGGTATTTCTGGCCTCAG-AATCCCACTGGTGCCTGCCCA-TCAAGTTCTAGCC------AAAGTGACA--CGAAGGATGACCATTCCAGTCCTGGCCCCTGACCTTGGCCCTGGCCACTACCCCACCaccctgactctatagctcactaggcagggccctagtga
i canFam3.chr5                 I 16 I 692

a score=11809.000000
s hg38.chr1_KI270714v1_random      38449 5 +     41717 TGATC
s panTro4.chr1_GL389124_random     39438 5 +     50403 TGATC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224080414 5 + 229942017 TGATC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220045642 5 - 229590362 TGATC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221930414 5 + 227556264 TGATC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211078663 5 - 220367699 TGATC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125308729 5 + 130588469 TGATC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115012952 5 - 155834243 TGAGC
i calJac3.chr7                 C 0 C 0
e canFam3.chr5                  28620292 692 -  88915250 I

a score=982060.000000
s hg38.chr1_KI270714v1_random      38454 393 +     41717 GTATAAATCATGATTTGTTTTCTTTCTCCTGGGAACAAAGATGCTATGGATGAACTGTAACTATTCATCAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCCCCCGTGTGGGCTGTGGGAATCTCTGGCGGAGACTGGTGCCAGCTGACTGCCAGCACCGCCG-------CAGGGAGTGAG-------CTGCCCATGGAGCCAGAGTCGGGCTGCAGAATGA---TTCCCACAGCCCCCCCCCCCCACCACTGCCAGTCACGCCTCCCCAGAGGGAGGCCAGGAAGAGGCTGTCCCTCCAAGGATCAG-TCTGGTTGTGGCCCGTGACTGCTTTCAATTGAAATTCACGGAGcctttggtggatctacggctctcggtgtcctccagtcaaacttcccggcctatgtt
s panTro4.chr1_GL389124_random     39443 386 +     50403 ATATAAATCATGATTTGTTTTCTTTCTCCTGGGAACAAAGATGCTATGGATGAACTGTAACTATTCATCAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCCCCCGTGTGGGCTGTGGGAATCTCTGGCGGAGACTGGTGCCAGCTGACTGCCAGCGCCGCCG-------CAGGGAGTGAG-------CTGCCCATGGAGCCAGAGTCGGGCTGCAGAATGA---TTCCCGCGGCCCGCC-------CCACTGCCAGTCACGCCTCCCCAGAGGGAGGCCAGGAAGAGGCTGTCCCTCCGAGGATCAG-TCTGGTTGTGGCCCGTGACTGCTTTCAATTGAAATTCACGGAGcctttggtggatctacggctctcggtgtcctccagtcaaacttcccggcctatgtt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224080419 386 + 229942017 ATATAAATCATGATTTGTTTTCTTTCTCCTGGGAACAAAGATGCTATGGATGAATTGTAACTATTCATTAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCGCCCGTGTGGGCTGTGGGAATCTCCAGCGGAGACTGGTGCCAGCTGACTGCCAGTGCTGCCG-------CAGGGAGTGAG-------CTGCCCATGGAGCCAGACTCGGGCTGAAGAATGA---TTCCCGCGGCCCTCC-------CCACTGCCAGTAATGCCTCCCCAAAGGGAGGCCAGGAAGAGGCTGTCCCTCCGAGGATCAG-TCCAGCTGCGGCCTGTGACTGCTTTGAATTGAAATTCACGGAGCCTTTGGTGGCTCTACGGCTCTCGGTGTCCTCCAGTCAAACTTCCTGGCCTGTGTT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220045647 385 - 229590362 ATATAAATCATGATTTGTTTTCTTTCTCCTGGGAACAAAGATGCTATGGATGAACTGTAACTATTCATCAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCGCCCGCGCGGGCTGTGGGAATCTCCGGCAGAGACTGGTGCCAGCTGACTGCCAACGCCGCCA-------CACGGAGTGAG-------CTGCCCATGGAGCCAGACTCAGACTGAAGAATGA---TTCCCGCGTCCCTCC-------CCACTGCCAGTAATGCCTCCCCAGAGGGAGGCCAGGAAGACGCTGTCCCTCCGA-GATCGG-TCCAGTTGCGGCCTATGACTGCTTTGAATTGAAATTCACCGAGCCTTTGGTGGCTCTACGGCTCTTGGCGTCCTCCAGTCACACTTCCTGGCCTATGTT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221930419 385 + 227556264 ATATAAATCATGATTTGTTTTCTTTCTCCTGGGAACAAAGATGCTATGGATGAACTGTAACTATTCATCAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCGCCCGCGCGGGCTGTGGGAATCTCCGGCGGAGACTGGTGCCAGCTGACTGCCAACGCCGCCA-------CACGGAGTGAG-------CTGCCCATGGAGCCAGACTCAGACTGAAGAATGA---TTCCTGCGTCCCTCC-------CCACTGCCAGTAATGCCTCCCCAGAGGGAGGCCAGGAAGACGCTGTCCCTCCGA-GATCGG-TCCAGTTGCGGCCTATGACTGCTTTGAATTGAAATTCACCGAGCCTTTGGTGGCTCTACGGCTCTTGGCGTCCTCCAGTCACACTTCCTGGCCTATGTT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211078668 385 - 220367699 ATATAAatcatgatttgttttctttctcctgggAACAAAGATGCTATGGATGAACTGTAACTATTCATCAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCGCCCGCGCGGGCTGTGGGAATCTCCGGCGGAGACTGGTGCCAGCTGACTGCCAACGCCGCCA-------CACGGAGTGAG-------CTGCCCATGGAGCCGGACTCAGGCTGAAGAATGA---TTCCCGCGTCCCTCC-------CCACTGCCAGTAATGCCTCCCCAGAGGGAGGCCAGGAAGACGCTATCCCTCCGA-GATCGG-TCCAGTTGTGGCCTATGACTGCTTTGAATTGAAATTCACCGAGCCTTTGGTGGCTCTATGGCTCTTGGCGTCCTCCAGTCACACTTCCTGGCCTATGTT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125308734 385 + 130588469 ATATAAATCATGATTTGTTTTCTTTCTCCTGGGAACAAAGATGCTATGGATGAACTGTAACTATTCATCAAGTCACCTC-TGATTACACAAAAGAAACATGGGTCGCCTGCGGGGGCTGTGGGAATCTCCAGCGGAGACTGGTGCCAGCTGACTGCCAACGCCGCCA-------CACGGAGTGAG-------CTGCCCATGGAGCCAGACTCAGGCTGAAGAATGA---TTCCCGTGTCCCTCC-------CCACTGCCAGTAATGCCTCCCCAGAGGGAGGCCAGGAAGAGGCTCTCCCTCCGA-GATCAG-TCCAGTTGCGGCCTATGACTGCTTTGAATTGAAATTCACAGAGCCTTTGGTGGCTCTACAGCTCTTGGCGTCCTCCAGTCACACTTCCTGGCCTATGTT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115012957 385 - 155834243 ATATAAATCATGATTTGTTTTCTTTCTCTTGGGAACAAAGATGCTATGGACGAACTGTAACTATTCATCAAGTCACCTC-TGATTGCACAAAAGAAACATGGGACACCCGTGTGGGCTGTGGGAATCTCTGGCAGAGATTTGTGCCAGCTCACTGTCAACGCCGCCACAGGGAGCAGGGAGTGAG-------TTGCCCAGGGAGCCAGACTTGGGCTGAAGAATGA---TTCCCGTGGCCCTCC-------CCGCTGTCAGTAATGCCTCCCCAAAGGGAGATCAGGAAGAGGCTGTGCCTCCGAGGATCAG-TCCGGTTGCGGTCTATGACTGCTTTGAATTGACATTCATGGAGCCTTTGGTG--------GCTCTTGGCGTCCTCCAGTCACGCCTCCTGGCCTATGTT
i calJac3.chr7                 C 0 I 593
s canFam3.chr5                  28620984 381 -  88915250 gcataaatca-----tatgttctttctCTCTGGGAAAAAGGTGACATGAATGAACTTCAAATAGTAAGCAAGTCACCACGTGACGACACAAAGCAAACATGGAATGCTTGC--------TGGAAATCTCCGTCCAAGACTGGTGCCAGCTTACTGTAGTTGTTGCTA-------CAAAGAGCAAGGAGTTCCCTTCCCACAAAACTAGACTCAGGTCAAAGAACTGCATTTCCAGTGGCCCTCT-------CCTTTGGCAATAATTTCTGCTACAAGGAAGGTAAGAAAGGAGGTGATTCCATGAGGATTAGACCTCGTCGTGGAGTAAGTCTGCTCTGGA-TAAAAGTCATGGATCTTTGGCTGGCTCTACCTGTCTTGA---CCTCTAATCACATGTCCTGGCTTATTTA
i canFam3.chr5                 I 692 C 0

a score=23256.000000
s hg38.chr1_KI270714v1_random      38847 7 +     41717 aaaagat
s panTro4.chr1_GL389124_random     39829 7 +     50403 aaaagat
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224080805 7 + 229942017 AAAAGAT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220046032 7 - 229590362 AAAAGAT
i rheMac3.chr1                 C 0 I 412
s macFas5.chr1                 221930804 7 + 227556264 AAAAGAT
i macFas5.chr1                 C 0 I 390
s papAnu2.chr1                 211079053 7 - 220367699 AAAAGAT
i papAnu2.chr1                 C 0 I 299
s chlSab2.chr20                125309119 7 + 130588469 AAAAGAT
i chlSab2.chr20                C 0 I 306
s calJac3.chr7                 115013935 7 - 155834243 aaaagaT
i calJac3.chr7                 I 593 C 0
s canFam3.chr5                  28621365 7 -  88915250 AAAAGAT
i canFam3.chr5                 C 0 C 0

a score=67437.000000
s hg38.chr1_KI270714v1_random      38854 24 +     41717 tcccaagtaggcctggcccaggga
s panTro4.chr1_GL389124_random     39836 24 +     50403 tcccaagtaggcctggcccaggga
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224080812 24 + 229942017 TCCCAAGTAGGCCTGGCCCAGGGA
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220046451 24 - 229590362 TCCCAAGTCGGCCTGGTCCAGGGA
i rheMac3.chr1                 I 412 C 0
s macFas5.chr1                 221931201 24 + 227556264 TCCCAAGTCGGCCTGGTCCAGGGA
i macFas5.chr1                 I 390 C 0
s papAnu2.chr1                 211079359 24 - 220367699 tcccaaGTAGGCCTGGTCCAGGGA
i papAnu2.chr1                 I 299 C 0
s chlSab2.chr20                125309432 24 + 130588469 TCCCAAGTAGGCCTGGTCCAGGGA
i chlSab2.chr20                I 306 C 0
s calJac3.chr7                 115013942 24 - 155834243 TTCCAACTAGGCCTGGCCCAGGGA
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28621372 24 -  88915250 TCCAAATCAGGCTTGGCTGAGGGA
i canFam3.chr5                 C 0 C 0

a score=1303005.000000
s hg38.chr1_KI270714v1_random      38878 419 +     41717 agaaatgcagccccgatttgAGAAAGGTTCTACA--------------CCCCAGCCCATCAGCTAGCATGGAATAGTTCCAGAAGCCTACAGTTGCCTGCAACTCTCCCAGCCTCCCAGGTCTTCCTCCTGGCCCGT-----AATTAGGCCAAATT--TGACCCCACCTGAG-----GCCTCTACACCTCC------CCACATCACTGCCGGTTCCA-TCACGGCAGGGCTGTGAGGCCGACCCTC-TTTTCATTAGGTTctc-----agctctcctctcctcaaagatgcctggctt------ccctgacccctcaacttaaagaaccatccccatcgcttcctaccaaactc-ctcatttcactatatagcacttgccactcctgaattatcttgttctccta---------ttcctcagaccc--at--------------acacgcgtggatagaagaatg---------------------------------------tgtggctga-------------------cgtgatgacaggccgg
s panTro4.chr1_GL389124_random     39860 419 +     50403 agaaatgcagccccgatttgAGAAAGGTTCTACA--------------CCCCAGCCTGTCAGCTAGCATGGAATAGTTCCAGAAGCCTACAGTTGCCTGCAACTCTCCCAGCCTCCCAGGTCTTCCTCCTGGCCCGT-----AATTAGGCCAAATT--TGACCCCACCTGAG-----GCCTCTACACCTCC------CCACATCACTGCCAGTTCCA-TCACAGCAGGGCTGCGAGGCCGACCCTC-TTTTCATTAGGTTctc-----agctctcctcccctcaaagatgcctggctt------ccctgacccctcaacttaaagaaccatccccatcgcttcctaccaaactc-ctcatttcactatatagcacttgccactcctgaattatcttgttctccta---------ttcctcagaccc--at--------------acacgcgtggatagaagaatg---------------------------------------tgtggctga-------------------cgtgatgacaggccgg
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224080836 421 + 229942017 AGAAATGCAGCCCTGATTTGAGAAAGGTTCTACA--------------CCCCAGCCCATCAGCTAGCATGGAATAGTTCCAGAAGCCTACAGTTGCCTGCAACTCTCccagcctcccaggtcttcctcttggcccct-----aattaggccaaatt--tgaccccacctgag-----gcctctacacctcc------ccacatcactgccagttaca-tcacggcagggctgcgaggccgaccgtc-ttttcattagggtctc-----agctctcctctcctcaaagacgcctggctt------ccctgacccctcaacttaaagaaccatccccatcacttcctaccaaactg-ctcatttcactacacagcacttgtcactcctgaattatcttgtcctccta---------ttcctcagacccatat--------------acacacgtggatagaagaatg---------------------------------------tgtggctga-------------------cgtgatgacgggccgg
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220046475 419 - 229590362 GGAAATGCAGCCCTGATTTGAGAAGGGCTCTACA--------------CCCCAGCCTATCAGCTAGCATGGAAGAGTTCCAGAAGCCTAAAGTTACCTGCAACTCTCCCAGCCTCCCAGCTCTTCCTCCTGGCCCAT-----AATTAGGCCAAATT--TGATCCCACCGGAG-----GCCTCTACACGTCC------CTACATCACTGCCAGTTCCG-TCATGGCAGGGCTGCGAggccgaccctc-ttttcattagggtctc-----agctctcctctcctcaaagacacctggctt------ccctgacccctcaacttaaagaaccatccccttcacttcctaccaaactg-cccatctccctatatagcacttgtcactcctgaattatcttgttctccta---------ttcctcagaccc--at--------------acacaggtggacagtagaatg---------------------------------------tgtggctga-------------------cgtgatgacgggccgg
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221931225 419 + 227556264 GGAAATGCAGCCCTGATTTGAGAAGGGCTCTACA--------------CCCCAGCCCATCAGCTAGCATGGAAGAGTTCCAGAAGCCTAAAGTTACCTGCAAATCTCCCAGCCTCCCAGCTCTTCCTCCTGGCCCAT-----AATTAGGCCCAATT--TGATCCCACCGGAG-----GCCTCTACACGTCC------CTACATCACTGCCAGTTCCG-TCATGGCAGGGCTGCGAggccgaccctc-ttttcattagggtctc-----agctctcctctcctcaaagacacctggctt------ccctgacccctcaacttaaagaaccatccccttcacttcctaccaaactg-cccatctccctatatagcacttgtcactcctgaattatcttgttctccta---------ttcctcagaccc--at--------------acacatgtggacagtagaatg---------------------------------------tgtggctga-------------------cgtgatgacgggccgg
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211079383 419 - 220367699 GGAAATGCAGCCCTGATTTGAGAAGGGTTCTACA--------------CCCCAGCCTATCAGCTAGCATGGAAGAGTTCCAGAAGCCTAAAGTTACCTGCAactctcccagcctcccagctcTTCCTTCTGGCCCAT-----AATTAGGCCAAATT--TGATCCCACCGGAG-----GCCTCTACACGTCC------CTACATCACTGCCAGTTCCG-TCATGGCAGGGCTGCGAGGCCGACCCTC-TTTTCATTAGGGTCTC-----AGCTCTCCTCTCCTCAAAGACACCTGGCTT------CCCTGACCCCTCAACTTAAAGAACCATCCCCTTCACTTCCTACCAAACTG-CCCATCTCCCTATATAGCACTTGTCACTCCTGAATTATCTTGTTCTCCTA---------TTCCTCAGACCC--AT--------------ACACACGTGGACAGTAGAATG---------------------------------------TGTGGCTGA-------------------CGTGATGACGGGCCGG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125309456 419 + 130588469 GGAAATGCAGCCCTGATTTGAGAAGGGTTCTACA--------------CCCCAGCCTATCAGCTAGCACGGAAGAGTTCCAGAAGCCTAAAGTTACCTGCAACTCTCCCAGCCTCCCAGCTCTTCCTCCTGGCCCAT-----AATTAGGCCAAATT--TGACCCCACCGGAG-----GCCTCTACACGTCC------CTACATCACTGCCAGTTCCG-TCATGGCAGGGCTGTGAggctgaccctc-ttttcattagggtctc-----agctctcctctcctcaaagacacctggctt------ccctgacccctcaacttagagaaccatccccttcacttcctaccaaactg-cccatctccctatatagcacttgtcactcctgaattatcttgttctccta---------ttcctcagaccc--at--------------acacacgtggacagtagaatg---------------------------------------tgtggctga-------------------cgtgatgacgggccgg
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01058500v1         0 419 -       747 AGAAATGCAGCCCTGATTTAAGAAAGGTTCTACA--------------CCCCAGCCTATCAGCTAGCATGGAACAGTTCCAGAAGCCTAAAGTTACCTGCAACTCTCCCAGCCTCCCAGGTCTTCCTCCTGGCCCAT-----AATTAGGCCAAATT--TGACCCCACCTGAG-----GCCTCTACACGTCC------CTAGATCACTGCCAGTTCCA-TCATGGCAGGGCTGTGAGGCCGACCCTC-TTTTCATTAGGGTCTC-----AGCTCTCCTCTCCTCAAAGACACCTGGCTT------CCCTGACCCCTCAACTTAAAGAACCATCCCCTTCACTTCCTACCAAACTG-CCCATCTCACTATATAGCACTCGTCACTCCTGAATCATCTTGTTCTCCTG---------TTCCTCAGACCC--AT--------------ACACACGTGGATAGTAGAGTG---------------------------------------TGTGGCTGA-------------------CGTGATGACGGGCCGG
i nasLar1.chrUn_JMHX01058500v1 N 0 C 0
s calJac3.chr7                 115013966 437 - 155834243 AGAAACAGAGCCCTGGTTTGAGGAAGGTTCTACA--------------CGCCAGCCCATCGGCTAGCAGGGAATCTTCCCAGAAG----------CCCGAAACTCTCCCAGCCTCCCAGGTCTTCCTCCTGGCCCAC-----AATTAGGCGAAACTCCTGGCCCCCCCTCAG-----GCCTCTACACCTCC------CCACATCACTGCCAGTTCTG-TCATGGCAGGGCCTGGAGGCCAACCCTCTTTTTTATTAGGGTCTC-----AGCTCTCCCCTCCTCAAAGACGCCTGGCTTCCCTGACCCTGACCCCTCGACTTAAAAGACCATCCCCATCACTTCCTACCAAATTG-CCCATTTTACTGCATGGCACTTGTCACTCCTGAATGATCTTGTTATTTTC---------TTCCTCAGACCC--AC--------------ACACGTGTGGATAGAAGAATG---------------------------------------TGTGGCTGAAGGGGCAcactgtgtccctcatgctgacgggccgg
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28621396 503 -  88915250 AGAAATGCAGTCCTTATTTGAGGAAGGTTCTAGAATAGTCAGCTTTACACCCAATCCATCTACAAGCCTGGAATATTTCTAGAAGCTTACCCTTTCCTGAAACTctccaagccttctaggccttctttctggtcatctgggaagccaaaccaagct--tgatcccagctcagcggctacttctgctgattcttctggctgcaatgctcccaggccagatttttgctgggctg-------gtccctc-tttttatccaggtctcagatgagctcttgcctgtcctaggaggccttcctc------cact---ccctcaatttaaagaa--aatgccactggtttctaccaaactaccccattttgctttatagctcttgtcact--ggagtggtcttgtgtatctatttCATTCTTTCCAGGGACCC--ATGTCACAAGGCTGCCACAAGCCAGAGCAGAGCCGTGCAAAGAGCAGACCCCTGCCATCCTGGAGCTTGGTTCCACTGAGGCTGC-------------------CA-GCTGGCAAACCAa
i canFam3.chr5                 C 0 I 111

a score=1079489.000000
s hg38.chr1_KI270714v1_random      39297 324 +     41717 gcagttgagtg-----------------------------------cacccacttgctgtttgttgaatgaataaatATGAGAAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGCCGCAGCCTGGTAGAGCAGGTTAGATCCACTTGCCAGATAGGCTCGGAAATGCCCAGAGGGGAGTTTTGTCTAGGGTCACATGCAATGAG-CTGTAGGCAGAGTGGACAAGTCCCTGGGATTCCATGCCCcactcattcagcagatgtttactg-gagtcaggctctgggcatacagagccgggaagacaaagcccctggcctcaTTAGTCAGGGACAGACGGGATGAAAACAC
s panTro4.chr1_GL389124_random     40279 324 +     50403 gcagttgagtg-----------------------------------cacccacttgctgtttgttgaatgaataaatATGAGAAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGCCGCAGCCTGGTAGAGCAGGTTAGATCCACTTGCCAGATAGGCTCGGAAATGCCCAGAGGGGAGTTTTGTCTAGGGTCACATGCAATGAG-CTGTAGGCAGAGTGGACAAGTCCCTGGGATTCCATGCCCcactcattcagcagatgtttactg-gagtcaggctctgggcatacagagccgggaagacaaagcccctggcctcaTTAGTCAGGGACAGACGGGATGAAAACAC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224081257 324 + 229942017 gcagttgggtg-----------------------------------cacccagttgctgtttgttgaatgaataaatATGAGAAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGTCGCAGCCTGGTAGGGCAGGTTAGGTCCACTTGCCAGGTAGGCTCGGGgatgctcagaggggagttttgtctagggtcacatgcaatgag-ctgtcggcagagtggacaagtccctgggattccacaccccGCtcattcagcagacgtttactg-gagtcaggctctgggcatacagagctgggaagacaaagcccctggcctcaTTAGTCAGGGACAGATAGGATGAAAACAC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220046894 324 - 229590362 gcagttgggtg-----------------------------------cacccagttgctgtttgttgaatgaataaatGTGAGAAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGCCTCAGCCTGGTAGGGCAGGTTAGGTCCACTTGCCAGACAGGCTCGGGAATGGCCAGAGGGGAGTTTTGTCTAGGGTCACATGCAATGAG-CTGTAGGCAGAGCGGACAAGTCCCTGGGATTCCACACCCcactcattcagcagacgtttactg-gagtcaggctctgggcatacagagccgggaagacaaagcccctggcctcaTCAGTCAGGGAGAGATGGGATGAAAACAC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221931644 324 + 227556264 gcagttgggtg-----------------------------------cacccagttgctgtttgttgaatgaataaatGTGAGAAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGCCTCAGCCTGGTAGGGCAGGTTAGGTCCACTTGCCAGACAGGCTCGGGAATGGCCAGAGGGGAGTTTTGTCTAGGGTCACATGCAATGAG-CTGTAGGCAGAGCGGACAAGTCCCTGGGATTCCACACCCcactcattcagcagacgtttactg-gagtcaggctctgggcatacagagccgggaagacaaagcccctggcctcaTCAGTCAGGGAGAGATGGGATGAAAACAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211079802 324 - 220367699 GCAGTTGGGTG-----------------------------------CACCCAGTtgctgtttgttgaatgaataaatgtgagaAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGCCTCAGCCTGGTAGGGCAGGTTAGGTCCACTTGCCAGACAGGCTTGGGAATGGCCATAGGGGAGTTTTGTCTAGGATCACATGCAATGAG-CTGTAGGCAGAGCGGACAAGTCCCTGGGATTCCACACCCCACTCATTCAGCAGACGTTTACTG-GAGTCAGGCTCTGGGCATACAGAGCTGGGAAGACAAAGCCCCTGGCCTCATCAGTCAGGGAGAGATGGGATGAAAACAC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125309875 324 + 130588469 gcagttgggtg-----------------------------------cacccagttgctgtttgttgaatgaataaatGTGAGAAG---------GGACATCCAGGCCAGGAG-TAGGGGATGTCTCTTCACTC-ATGGCCTCAGCCTGGTAGGGCAGGTTAGGTCCACTTGCCAGACAGGCTCGGGAATGGCCAGAGGGGAGTTTTGTCTAGGGTCACATGCAATGAG-CTGTAGGCAGAGCGAACAAGTCCCTGGGATTCCACACCCcactcattcagcagacgtttactg-gagtcaggctctgggcatacagagccgggaagacaaagcccctggcctcaTTAGTCAGGGAGAGGTGGGATGAAAACAC
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01058500v1       419 309 -       747 GCAGTTGGGTG-----------------------------------CACCCAGTTGCTGTTTGTTGAATGAATATATGTGAGAAG---------GGACATCCAGGCCAGGAG-TCGGGGATGTCTCTTCACTC-ATGGCCTCAGCCTGTTAGGGCAGGTTAGGTCCACTTGCCAGACAGGCTCGGGAATGGCCAGAGGGGAGTTTTGTCTAGGGTCACATGCAATGAG-CTGTAGGCAGA--GGACAAGTCCCTGGGATTCCATGCCCCACTCATTCAGCAGACGTTTACTG-GAGTCAGGCTCTGGGCATACAGAGC-------------CTCCCGGCCTCATTAGTCAGGGAGAGATGGGATGAAAACAC
i nasLar1.chrUn_JMHX01058500v1 C 0 C 0
s calJac3.chr7                 115014403 322 - 155834243 gcagttgcgtg-----------------------------------tacccagttgctgtttgttgaatgaataaatGTGAGAAG---------GGACAGCCAGGCCAGGAG-TAGGGGATGTCTTTTCACTC-ATGGCCTCAGCCTGGTAGGGTAGGTTAGGTCCATTTGCCAGATGGGCTGGGGGATGCCCAGAAGGGGTTTTTGTCTGGGGTCACAGGCAATGAG-CTGTAGGCAGCGTGGACAAATCCCTGGGGTTCCACAacccactcattcagcagacgtttactg-gagtcagggtccgggcatacagagctgggaagacaaagcccctggcctcaTTATTCAGGGACAGACGGAATGAAA--AC
i calJac3.chr7                 C 0 C 0
s canFam3.chr5                  28622010 342 -  88915250 GCAGCTGGGAGGGCTCACCATGTCCCGAACATGAACACCAGTGGCATGCCCAGTTGCTGGTTGTTGAGTGAGTAGCTGTGGAGATGAGTGAGACGGGCAGCTAGGCCAGGAGCTCTGTGCTATCTCCTCACACAATGGCCTCAGCT---------------GGCCTGTTTGCCAGATGGGCCCAGGGAGGCCCAGGGGGGAGTTCCATCTGAGATCACCTGCATTGAGCCTGCATGCA----GGACGAGCCCCAAGGATTCCAGAC---------TCAACAAACACTTACTGTGTGTCAGGCACTTGGCCTACAGGATGGGGAAGAGGAAGTCTCC--TCTCATTAGTTGGGAAGATATGATAAGAGAATGC
i canFam3.chr5                 I 111 N 0

a score=61568.000000
s hg38.chr1_KI270714v1_random      39621 19 +     41717 ACATCTGTCTGTGTGATGC
s panTro4.chr1_GL389124_random     40603 19 +     50403 ACATCTGTCTGTGTGATGC
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224081581 19 + 229942017 ACATCTGTCTGTGTGATGC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220047218 19 - 229590362 ACATCTGTCTGTGTGATGC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221931968 19 + 227556264 ACATCTGTCTGTGTGATGC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211080126 19 - 220367699 ACATCTGTCTGTGTGATGC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125310199 19 + 130588469 ACATCTGTCTGTGTGATGC
i chlSab2.chr20                C 0 C 0
s nasLar1.chrUn_JMHX01058500v1       728 19 -       747 ACATCTGTCTGTGTGATGC
i nasLar1.chrUn_JMHX01058500v1 C 0 N 0
s calJac3.chr7                 115014725 19 - 155834243 GCATCTGCCTGTGTGCTGC
i calJac3.chr7                 C 0 C 0

a score=1354356.000000
s hg38.chr1_KI270714v1_random      39640 631 +     41717 AGGGCCCAGCCAGAAATCCGGGCATGCAGGGAGTGAAGAGATGGAATGTGTCTCAGGGGCTTCTCCTAGGGGTTAGC-TTCCGGCTGTCACGCAGGATGCACACAGAACGCAAAGCCAGGCAACCAT-AGGGCGGCTGGGAggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcggatcacctgagttcaggagttcgagaccagcctggccaacatggtgaaa-ccccatctctactaataatacaaaaattagccaggtgtggtgccatatgcacctataatcctggctactcaggaggctaaggcaggagaatcacctgaacctgggaggtggaggttacagagagctgtgccactgcactcaagcctgggcaatagagcaagagtcgagtctc-----aaggaaaaGGGCAGCAGGGaacaaggccagcgggaaagtgagtgggcatcatgggcgcgggtgacaatttcagcgaggctcagggttggccttgctgag---gtgaggtctgggcaaagacttgcaggaaggcagggagcaggcggggatctctgatccctgcagagggatcagcctctgtgaaggcaggggtgctggcctgttggaggggaccac
s panTro4.chr1_GL389124_random     40622 631 +     50403 AGGGCCCAGCCAGAAATCCGGGCATGCAGGGAGTGAAGAGATGGAATGTGTCTCAGGGGCTTCTCCTAGGGGTTAGC-TTTCGGCTGTCATGCAGGATGCACACAGAACGCAAAGCCAGGCAACCAT-AGGGCGGCTGGGAggccaggtgcagtggctcatgcctgtaatcccagcaccttgggaggccgaggtgggcggatcacctgagttcaggagttcgagaccagcctggccaacatggtgaaa-ccccatctctactaataatacaaaaattagccaggtgtggtgccatatgcacctataatcctggctactcaggaggctaaggcaggagaatcacctgaacctgggaggtggaggttacagagagctgtgccactgcactcaagcctgggcaatagagcaagagtcgagtctc-----aaggaaaaGGGCAGCAGGGaacaaggccagcgggaaagtgagtgggcatcatgggcgcgggtgacagtttcagcgaggctcagggttggcctcgctgag---gtgaggtctgggcaaagacctggaggaaggcagggagcaggcggggatctctgatccctgcagagggatcagcctctgtgaaggcaggggtgctggcctgttggaggggaccac
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224081600 631 + 229942017 AGGGCCTGGCCGGAAATC--AGCACGAAGGGAGTGAAGAGACGGAATGTGTTTCAGGGGCTTCTCCTAGGGGTTAGC-TTTCGGCTGTCACGCAGGATGCACACAGAACGCAAAGCCAGGCAACCAT-AGGGCACCTAGGAggccaagtacagtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacctgagttcaggagttcgagaccagcctggccaacatggtgaaacccccatctctactaataatacaaaaattagccgggtgtggtgccctatgcacctataatcccggctacttggtaggctaaggcaggagaatcacctgaacctgggaggtggaggttgcagtgagccacgccactgcactccagcctgggcgacagagcgagactcaagtctc----aaagaaaaaGGGCAGCAGGGaacaaggccagtgggagagtgagtgggcatcatgggcgcgggtgacaatttcagcgaggctcagggttggccttgctgag---gtgaggtctgcgcaaagacttggaggaaggcagggagcaggtggggatctctgatccctgcagagggatcagcctctgtgaaggcaggggctctggcctgttggaggGGACCAT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220047237 607 - 229590362 AGGGCCTGGCCGGAAATCCGGGCATGCAGGGAGTGAAGAGACGGAATGTGGCTCAGGGGCTTC-CCTAGGGACTAGC-TTTCGGCTGTCACACAGGATGCACACAGAACGCAAAGCCAAGCAACCAC-AGGGCGGCCGGGAggccgggtgcagtggctcacacctgtaatcccaacactttgggaggccgaggcaggcggatcacctgagttcaggagttcgagaccagcctggtcaacgtggtgaaa-ccccatctctactaacaatacaaaaattagctgggcatggtgcc--acgcacctataatccgggctacttgggaggctaaggcaggagaatcacttgaacctgggaggtggaggttgcagtgaaccacgccactgcactccagcctgggcgacagagtgaggctcaagtctc-----aaaaaaaaGGGCAGCAGGGaacaaggccagcggaagagtgagtgggcatcgtgggcatgggtgataatttcagcgaggctcaaggttggccttgctgag---gtggggtctgagcaaagacttggaggagggcagggagcaggcg---------------------gggatcagcctctgtgaaggcaggggcgctggcctgttggaggggaccac
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221931987 607 + 227556264 AGGGCCTGGCCGGAAATCCGGGCATGCAGGGAGTGAAGAGACGGAATGTGGCTCAGGGGCTTC-CCTAGGGACTAGC-TTTCGGCTGTCACACAGGATGCACACAGAACGCAAAGCCAAGCAACCAC-AGGGCGGCCGGGAggccgggtgcagtggctcacacctgtaatcccaacactttgggaggccgaggcaggcggatcacctgagttcaggagtttgagaccagcctggtcaacgtggtgaaa-ccccatctctactaacaatacaaaaattagctgggcatggtgcc--acgcacctataatcctggctacttggaaggctaaggcaggagaatcacttgaacctgggaggtggaggttgcagtgaaccacgccactgcactccagcctgggcgacagagtgaggctcaagtctc-----aaaaaaaaGGGCAGCAGGGaacaaggccagcggaagagtgagtgggcatcgtgggcatgggtgataatttcagcgaggctcaaggttggccttgctgag---gtggggtctgagcaaagacttggaggagggcagggagcaggcG---------------------GGGATCAGCCTCTGTGAAGGCAGGGGTGCTGGCCTGTTGGAGGGGACCAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211080145 607 - 220367699 AGGGCCTGGCCGGAAATCCGGGCATGCAGGGAGTGAAGAGACGGAATGTGGCTCAGGGGCTTC-CCTAGGGACTAGC-TTTCAGCTGTCACACAGGATGCACACAGAACGCAAAGCCAAGCAACCAC-AGGGCAGccgggaggccgggcgcggtggctcacacctgtaatcccaacactttgggaggccgaggcaggcggatcacctgagttcaggagttcgagaccagcctggtcaacgtggtgaaa-ccccatctctactaacaatacaaaaattagctgggcatggtgcc--acgcacctataatcctggctacttgggaggctaaggcaggagaatcacttgaacctgggaggtggaggttgcagtgaaccacgccactgcactccagcctgggcgacagagtgaggctcaagtctc-----aaaaaaaagggcaGCAGGGAACAAGGCCAGCGGAAGAGTGAGTGGGCATCGTGGGCACGGGTGATAATTTCAGCGAGGCTCAAGGTTGGCCTTGCTGAG---GTGGGGtctgagcaaagacttggagGAGGGCAGGGAGCAGGCG---------------------GGGATCAGCCTCTGTGAAAGCAGGGGCGCTGGCCTGTTGGAGGGGACCAC
i papAnu2.chr1                 C 0 I 742
s chlSab2.chr20                125310218 607 + 130588469 AGGGCCTGGCCGGAAATCCGGGCATGCAGGGAGTGAAGAGACGGAATGTGGCTCAGGGGCTTC-CCTAGGGACTAGC-TTTCGGCTGTCACACAGGATGCACACAGAACGCAAAGCCAAGCAACCAC-AGGGCGGCCAGGAggccgggtgcagtggctcacacctgtaatcccaacactttgggaggccgaggcaggcagatcacctgagttcaggagttcgagaccagactggtcaacgtggtgaaa-ccccatctctactaacaatacaaaaattagctgggcatggtgcc--acgcacctataatcctggctacttgggaggctaaggcaggagaatcacttgaacctgggaggtggaggttgcagtgaaccacgccattgcactccagcctgggcaatagagtgaggctcaagtttc-----aaaaaaaaGGGCAGCAGGGaacaaggccagcggaagagtgagtgggcatcatgggcacgggtgacaatttcagcgaggcttaaggttggctttgctgag---gtggggtctgagcaaagacttggaggagggtagggagcaggcG---------------------GAGATCAGCCTCTGTGAAGGCAGGGGCGCTGGCCTGCTGGAGGGGACCAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115014744 627 - 155834243 AGGGCCTGGCCGGAAATATGGGTGTGCAGGGAGTGAAGAGATCAAATGTGTCTTGGGGCCTCT-TGCTGGGCCTGGCTTTTCGGCTGTCACACAGGATGCACACAGGACGAAAAGTCAGGTCACCATAAGGGCAGCCGGGAGCccaggtgcggaggtgcatgcctgtaatcccagcactttgggaggccaaagcaggtggatcacctgaggtcagcagttcaagaccagcctggacaacatggtgaaa-ccccgtctctactaataatacaaaagttggccaggcataatggt--gtgcacctgtaatcccagctactcaggaggctgaggcgggaaaattgcttgttgctgtga-gtagagatcaca----------ctactgcactccagcctcggtgacagagcaagactcaagtctcaaaaaaaaaaaaaaaaCAGCAGGGAACTAGGCCAgcaggggagtgagtgcacattgtgggcgctggtgacaatttcagtgaggctcagggttggccttgctgaggaagtgaggtctgagcaaagacttggaggagggcagagagcaggcgggggtctctgatccctgcggaaggatcagcctctgtgaaggaaggggtgctggcctgttggaggggaccat
i calJac3.chr7                 C 0 C 0

a score=202650.000000
s hg38.chr1_KI270714v1_random      40271 131 +     41717 agcccggaggAGGGACAGCCTCTGGGCCATTGTAAGGAAGTGAGCAGCATTCCCTGTCAGTGACCAGAAGCCTGTGACGGGAGGTGCtc--------ttttttttttttga-aacggagtcttgctctgttgcccaggct
s panTro4.chr1_GL389124_random     41253 132 +     50403 agcccggaggAGGGACAGCCTCTGGGCCATTGTAAGGAAGTGAGCAGCATTCCCTGTCAGTGGCCAGAAGCCTGTGATTGGACGTGCtc-------tttttttttttttga-aacggagtcttgctctgttgcccaggct
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224082231 115 + 229942017 AGCCCAGAGGAGGGACAGCCTCTGGGCCATTGTAAGGA--------------------AGTGGCCAGAAGCCTGTAATGGGACttgttc----ttttttttttttttttga-aatggagtcttgctctgttgcccaggct
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220047844 133 - 229590362 agcccggaggagggaTGGCCTCTGGGCCATTATAAGGAAGTGAGCAGCCTTCCCTGTCAGTGGCCAGAAGCCTGTGATGGGACTTACtc------ttttttttttttttga-aacagagtcttgctctgttgctcaggct
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221932594 133 + 227556264 AGCCCGGAGGAGGGATGGCCTCTGGGCCATTATAAGGAAGTGAGCAGCCTTCCCTGTCAGTAGCCAGAAGCCTGTGATGGGACTTACtc------ttttttttttttttga-aacagagtcttgctctgttgctcaggct
i macFas5.chr1                 C 0 C 0
s chlSab2.chr20                125310825 139 + 130588469 AGCCCGGAGGAGGGACGGCCTCTGGGCCATTAGAAGGAAGTGAGCAGTCTTCCCTGTCAGTGGCCAGAAGCCTGTGATGGGACTTACtcttttttttttttttttttttga-aacagagtcttgctctgttgctcaggct
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115015371 136 - 155834243 agcctggaggAGGGACAGCCTCTGGGACATTGTAAGGAAGTGAGTGGCCTTCCCTATCAGTGGCCAGGAGCCTGTGACAAGACTTGCTC----TTTCTTTTTTTTTTTTAATTGTGAAGTCTTGCTCTGTTGCCCAGGCT
i calJac3.chr7                 C 0 M 1005
e papAnu2.chr1                 211080752 742 - 220367699 I

a score=60314.000000
s hg38.chr1_KI270714v1_random      40402 50 +     41717 ggaatgcagtggcacaatctcagctcactgtaaccgctgcctcccaggtt
s panTro4.chr1_GL389124_random     41385 50 +     50403 ggaatgcagtggcgcaatctcagctcactgtaaccgctgcctcccaggtt
i panTro4.chr1_GL389124_random C 0 C 0
s ponAbe2.chr1                 224082346 50 + 229942017 ggaatgcagtggcacaatctcagctcactgcaaccgctgcctcctgggtt
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220047977 50 - 229590362 gaaatgcagtggcgcaatttcggctcactgcaacctctacctcccaggtt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221932727 50 + 227556264 gaaatgcagtggtgcaatttcggctcactgcaacttctacctcccaggtt
i macFas5.chr1                 C 0 C 0
s chlSab2.chr20                125310964 50 + 130588469 gaaatgcagtggcgcaatttcggttcactgcaacctctacctcccaggtt
i chlSab2.chr20                C 0 C 0
e calJac3.chr7                 115015507 1005 - 155834243 M
e papAnu2.chr1                 211080752 742 - 220367699 I

a score=333075.000000
s hg38.chr1_KI270714v1_random      40452 237 +     41717 caagtgattcttatg---cctcagcctcccaagcagctgggactacaggcgggagccaccacacccggctaactAtttttcccc--ctgagatggagtcttgctctgtcgcccaggcttgagtgcagtggcgcaatcttggttcactgcaacctccgccttccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacagac----acccaccaccatgcccagctaattttt-
s panTro4.chr1_GL389124_random     41435 237 +     50403 caagtgattcttatg---cctcagcctcccaagcagctgggactacaggcgggagccaccacacccggctaactttttttcccc--ctgagatggagtcttgctctgtcgcccaggcttgagtgcagtggcgcaatcttggttcactgcaacctccgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacagac----acccaccaccatgcccagcTAATTTTT-
i panTro4.chr1_GL389124_random C 0 M 970
s ponAbe2.chr1                 224082396 237 + 229942017 caagtgattctcatg---cctcagcctcccaagtagctgggactacaggcgggagccaccacacctggctaaCtttttttcccc--ttgagatggagtcttgctctgtcgcccaggctggagtgcagcggcatgatcttagttcactgcaacctccgccttccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacagac----acccaccaccatgcccggctaattttt-
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220048027 236 - 229590362 caagtgattctcatg---cctcagccttccaagtagctgggactacaggtgggagccaccacacccggccaaCttttttcccca--ctgagatggagtcttgctccgtcgcccaggct-gagtgcagtggcgcgatcttggttcactgcaacctccaccttctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacagac----gcctaccaccatgcccagctaattttt-
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221932777 236 + 227556264 caagtgattctcatg---cctcagccttccaagtagctgggactacaggtgggagccaccacacccggccaacttttttcccca--ctgagatggagtcttgctccgtcgcccaggct-gagtgcagtggcgcgatcttggttcactgcaacctccaccttctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacagac----gcctaccaccatgcccagctaattttt-
i macFas5.chr1                 C 0 C 0
s chlSab2.chr20                125311014 236 + 130588469 caagtgattctcatg---cctcagccttccaagtagctgggactacaggtgggagccaccacacccagccaacttttttcccca--ctgagatggagtcttgctctgtcgcccaggct-gagtgcagtggcgcgatcttggttcactgcaaccttcacctttcgggttcaagcaattctcctgcctcaggctcccaagtagctgggattacagac----gcccaccaccatgcccagctaattttt-
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115016548 209 - 155834243 CAAGTCAATTCTATGTGCcctcagcctcacaagtagcggagaatccagatgattaccaccaggcccggttaatttacaatccttagatgagactgggtttcaccatgttagccaggct-------------------------------ggtctcaaactcttgacctcaggcgatccgcccgcctcgacctcccaaagtgctgggattacaggtgtgagcccacc-----gACCAG--GACttctc
i calJac3.chr7                 M 1005 C 0
e papAnu2.chr1                 211080752 742 - 220367699 I

a score=47268.000000
s hg38.chr1_KI270714v1_random      40689 66 +     41717 gtattttttagtagagacggggtttcaccatattggccaagctgg--------------------tctca----agttcctgaccttgtg---------
s ponAbe2.chr1                 224082633 66 + 229942017 gtattttttagtagagatggggtttcaccgtattggccgggctgg--------------------cctca----aattcctgacctcatg---------
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220048263 64 - 229590362 gtattttttggtagatagggggtttcaccatattggctaggccgg----------------------tca----aattcctgacctcggg---------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221933013 64 + 227556264 gtattttttggtagatacggagtttcaccatattggctaggccgg----------------------tca----aattcctgacctcggg---------
i macFas5.chr1                 C 0 C 0
s chlSab2.chr20                125311250 66 + 130588469 gtattttttggtagatacggggtttcaccatattggctaggccgg--------------------tctca----aattcctgaccttggg---------
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115016757 99 - 155834243 tttttttttttttgagatggggtctcgctctgtcactcacgctggagtgcagtggtgtgatcttggctcactgcaacctctgcctccagggttccagtg
i calJac3.chr7                 C 0 C 0
e papAnu2.chr1                 211080752 742 - 220367699 I
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=99594.000000
s hg38.chr1_KI270714v1_random      40755 89 +     41717 atccgcccgcctcagcttcccaaagtgctgggattacaggcatgaaccactgcaccagaccAGGACTTGCATTGtcttttcttttcttt
s ponAbe2.chr1                 224082699 89 + 229942017 atccgcccgcctcagcttcccaaagtgctgggattacaggcatgagccactacaccagaccAGGACTTGCGTTGTCTTTTCTtttcttt
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220048327 89 - 229590362 atccacccgcctcagcttcccaaagtgctaggattacaggcatgggccaccacacccggcTGGGACTTGCATTGTCttttcttttcttt
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221933077 89 + 227556264 atccacccgcctcagcttcccaaagtgctaggattacaggcatgggccaccacacccggcTGGGACTTGCAttgtcttttcttttcttt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211081494 64 - 220367699 attctcctgcctcagcctcctgagcagctgggactacaggcacccaccaccacgcctggctaa-------------------------t
i papAnu2.chr1                 I 742 C 0
s chlSab2.chr20                125311316 89 + 130588469 atccacccgcctcagcttcccaaagtgctaggattacaggcatgggccaccacacccggctgggacttgcaTTGtcttgtcttgtcttt
i chlSab2.chr20                C 0 I 375
s calJac3.chr7                 115016856 67 - 155834243 attctcctgcctcagcctcctgagtagctgggactacaggtgcgagccaccacgcgtggctaa------------------tttt----
i calJac3.chr7                 C 0 C 0
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=4330.000000
s hg38.chr1_KI270714v1_random      40844 14 +     41717 t---------ctttttctttttt----
s ponAbe2.chr1                 224082788 23 + 229942017 ttcttttttcttttttttttttt----
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220048416 14 - 229590362 ---------cttttttttttttt----
i rheMac3.chr1                 C 0 I 616
s macFas5.chr1                 221933166 14 + 227556264 ---------cctttttttttttt----
i macFas5.chr1                 C 0 I 37
s papAnu2.chr1                 211081558 14 - 220367699 ---------tttttgtatttttt----
i papAnu2.chr1                 C 0 I 4
s calJac3.chr7                 115016923 14 - 155834243 -------------tttatttttcagta
i calJac3.chr7                 C 0 C 0
e chlSab2.chr20                125311405 375 + 130588469 I
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=20075.000000
s hg38.chr1_KI270714v1_random      40858 68 +     41717 gagacggagtcttgctctgtcgcccaggctggagtacagtggctcgatcttggctcactgcaagctcc
s ponAbe2.chr1                 224082811 68 + 229942017 gagatggagtctcactctgttgcccaggctggagtgcagtggcgcgatcttggctcactgcaagctcc
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221933217 68 + 227556264 gagacggagtctcgctctgtcacccaggctggagtgcagtggccggatctcagctcactgcaagctct
i macFas5.chr1                 I 37 C 0
s papAnu2.chr1                 211081576 41 - 220367699 gagacgggttttcaccgtgttagccaggatgg---------------tctc------------gatcc
i papAnu2.chr1                 I 4 C 0
s calJac3.chr7                 115016937 42 - 155834243 gagacagcgtttcaccatat-ggccaggctgg---------------tctc----------gaactcc
i calJac3.chr7                 C 0 I 2
e rheMac3.chr1                 220048430 616 - 229590362 I
e chlSab2.chr20                125311405 375 + 130588469 I
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=36775.000000
s hg38.chr1_KI270714v1_random      40926 43 +     41717 gcctcccgggttccagcaattctcctgcctcagcctcccgagt
s ponAbe2.chr1                 224082879 43 + 229942017 acctcccgggttccagcaattctcctgcctcagcctcccgagt
i ponAbe2.chr1                 C 0 C 0
s macFas5.chr1                 221933285 43 + 227556264 gcctcccaggttcacgccattctcctgcctcagcctcccaagt
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211081617 43 - 220367699 gccttccaggttccagcgattcccctgcttcagcctccggagt
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125311780 43 + 130588469 gccttccaggttccagcgattcccctgcttcagcctccggagt
i chlSab2.chr20                I 375 C 0
s calJac3.chr7                 115016981 33 - 155834243 acctc----------gtgatccacccacctctgcctcccaaag
i calJac3.chr7                 I 2 C 0
e rheMac3.chr1                 220048430 616 - 229590362 I
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=50760.000000
s hg38.chr1_KI270714v1_random      40969 38 +     41717 tgctgggactacaggcacgtgccaccacacccggctaa
s ponAbe2.chr1                 224082922 38 + 229942017 agctgggattacaggcacgtgccaccacacccggctaa
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049046 38 - 229590362 tgctgggattacaggcttgagccaccgcgcccggccta
i rheMac3.chr1                 I 616 I 1
s macFas5.chr1                 221933328 38 + 227556264 agctgggactacaggcgcctgccacctcgcccggctaa
i macFas5.chr1                 C 0 I 769
s papAnu2.chr1                 211081660 38 - 220367699 agctgggactataggcacgtgccaccacacccagctaa
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125311823 38 + 130588469 agctgggactataggcacgtgccaccacactcagctaa
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017014 38 - 155834243 tgctgggattgcaggcgtgagccactgtgcttggcGGG
i calJac3.chr7                 C 0 C 0
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=324118.000000
s hg38.chr1_KI270714v1_random      41007 200 +     41717 tttttgtat-----------tttttagtagagacggggtttctcc---------------atgttggccaggctggtctcgaactcctgacctcgtgt--tccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacacccag-cAGGACTTGTGTTTTCAAAGGCTGCGGGTGGACATGGACGGGTGAAGGC---------------------CAGGGCCTTTCAGGCTTACTG
s ponAbe2.chr1                 224082960 200 + 229942017 cttttgtat-----------cttttagtagagacggggtttcttc---------------atgttggccaggctggtctcgaactcctgacctcgtgt--tccacccgcctcagcctcccaaagtgctgggattacaggtgtgaaccaccgcacccag-cAGGACTTGTGTTTTCAAAGGCTGCGTGTGGACATGGATGGGTGAAGGC---------------------TAGGGCCTTTCAGGCTTACTG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049085 200 - 229590362 tttttgtat-----------tttttagtagagacggggtttctcc---------------atattggccaggctggtcttgaactcctgacctcgtgt--tctgtctgtttcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccag-cAGGACTTGTGTTTTCAAAGGCTGCGGGTGGAGATGGACGGGCGAAGGC---------------------CCGGGCCTTTTAGGCTTACTG
i rheMac3.chr1                 I 1 C 0
s macFas5.chr1                 221934135 215 + 227556264 tttttgtat-----------tttttagtagagacggggtttctccgtgttagccaggatgatattggccaggctggtcttgaactcctgacctcgtgt--tctgtctgtttcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccag-cAGGACTTGTGTTTTCAAAGGCTGCGGGTGGAGATGGACGGGCGAAGGC---------------------CCGGGCCTTTTAGGCTTACTG
i macFas5.chr1                 I 769 C 0
s papAnu2.chr1                 211081698 200 - 220367699 tttttgtat-----------tttttagtagaaacggggtttctcc---------------atattggccaggctggtcttgaactcctgacctcgtgt--tctgtctgtttcagcctcccaaagtgctgggattacaggtgtgagccaccgcacctag-cagGACTTGTGTTTTCAAAGGCTGCGGGTGGAGATGGACGGGCGAAGGC---------------------CCGGGCCTTTTAGGCTTACTG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125311861 200 + 130588469 tttttgtat-----------tttttagtagagacggggtttctcc---------------atattgcccaggctggtcttgaactcctgacctcgtgt--tctgtctgtttcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccag-cAGGACTTGTGTTTTCAAAGGCTGCGAGTGGAGATGGACGGGCGAAGGC---------------------CCGGGCCTTTTAGGCTTACTG
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017052 233 - 155834243 -ACTTGTATTTAAAAAAAAATTTTtttttaagacagggtttcacc---------------atgttggtcaggcaggtcttgaactcccgacctcatgtgatccacctgccttggcct-ccaaagtgcttggattacaggtgtgagcaactacgcccggccAGGACTTGTATTTTCAAAGGCTGTGGGTGGAGCTGGACGGAAGAAGGCCATGTCCTGGTCCTAACCGCTCAGGGCCTTTCAGGCTCACTG
i calJac3.chr7                 C 0 I 10
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=176294.000000
s hg38.chr1_KI270714v1_random      41207 107 +     41717 AGGACT---------TCCCCTTTTCCGTTCTGTAGTGCACAGCCTCACAGAGCCTTG----------GGCCCAGCTGAGCCCAAGGGGTTCAGGTAGCCCCCACGTGAGGCAGAAAGGGGGTTTCT
s ponAbe2.chr1                 224083160 117 + 229942017 GGGACT---------TCCCCTTTTCTGTTCTGTAGTACACAGCCTCACAGAGCCTGGCTGCTCCCATGGCCCAGCTGAGCCCAAGGGGTTCGGGTAGCCCCCACGTGAGGCAGAAAGGGGGTTTCT
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049285 126 - 229590362 GCTCCCCTTTTAGGCTCCCCTTTTCCCTTCCTTAGTGCACAGCCTCACAGAGCCTGGCTGCTCCCATGGCCCATCTGAACCCAAGAGGTTCAGGTAGCCCCCACGTGGGGCAGAAAGGGAGTTTCT
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934350 126 + 227556264 GCTCCCCTTTTAGGCTCCCCTTTTCCCTTCCTTAGTGCACAGCCTCACAGAGCCTGGCTGCTCCCATGGCCCATCTGAACCCAAGAGGTTCAGGTAGCCCCCACGTGGGGCAGAAAGGGAGTTTCT
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211081898 126 - 220367699 GCTCCCCTTTTAGGctccccttttcccttccttaGTGCACAGCCTCACAGAGCCTGGCTGCTGCCATGGCCCATCTGAACCCAAGAGGTTCAGGTAGCCCCCACGTGGGGCAGAAAGGGGGTTTCT
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312061 126 + 130588469 GCTCCTCTTTTAGGCTCCCCTTTTCCCTTCCTTAGTGCACAGCCTCACAGAGCCTGGCTGCTCCCATGGCCCATCTGAACCCAAGGGGTTCAGGTATCCCCCATGTGGGGCAGAAAGGGGTTTTCT
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                  40816360 116 + 155834243 AAGACT---------TCCCCTTTTCCCTTCCTTTGTGCAGAGCTTCACAGTGCCTGGCTGCT-CCACAGCCCAGCTGAGCCTGAGGGGTTCAGGCAGCCCCCGTCTGGGACAGAAAGGAGGTTTCT
i calJac3.chr7                 T 19448 n 10
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=8595.000000
s hg38.chr1_KI270714v1_random      41314 6 +     41717 CAGAAG
s ponAbe2.chr1                 224083277 6 + 229942017 CAGAAG
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049411 6 - 229590362 CAGAAG
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934476 6 + 227556264 CAGAAG
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211082024 6 - 220367699 CAGAAG
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312187 6 + 130588469 CAGAAG
i chlSab2.chr20                C 0 C 0
e calJac3.chr7                  40816476 10 + 155834243 I
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=235959.000000
s hg38.chr1_KI270714v1_random      41320 143 +     41717 CCCTGGGATGCCCCAGCAGCGTGCTGCTTACAGAGCCCCAGGGTCCAAGGCTCAGCTCTCCCCCTTAGAAGGGTAGGGCAGGAGCACTAGCCCCGGTTAGATGACAGCTGGGACCAGGAGCTGCTGGTGGAGACACGAGATGG------------
s ponAbe2.chr1                 224083283 143 + 229942017 CCCCGGGACGCCCCAGCAGCGTGCTGCTTACAGAGCCCTTGGGCCCAAGGCTCAGCTCTCCCCCTTAGAAGGGTAGGGCAGGGGCACTAGCCCTGATTAGACGACAGCTGGGACCAGGAGCTGCTGGTGGAGACACGAGATGG------------
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049417 143 - 229590362 CCCTGGAACGCCCCAGCAGTGCGCTGCTTACAGAGCCCCAGGGCCCAAGGCTCAGCTCTCCCCCTTGGAAGGGTAGGGCAGGCACACTAGCCCTGGTTAGACAACAGCTGGGACCAGGAGCTGCTGGTGGAGACATGAGATGG------------
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934482 143 + 227556264 CCCTGGAACACCCCAGCAGTGCGCTGCTTACAGAGCCCCAGGGCCCAAGGCTCAGCTCTCCCCCTTGGAAGGGTAGGGCAGGCACACTAGCCCTGGTTAGACAACAGCTGGGACCAGGAGCTGCTAGTGGAGACATGAGATGG------------
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211082030 143 - 220367699 CCCTGGAATGCCCCAGCAGTGCGCTGCTTACAGAGCCCCAGGGCCCAAGGCTCAGCTCTCCCCCTTGGAAGGGTAGGGCAGGCACACTAGCCCTGGTTAGACAACAGCTGGGACCAGGAGCTGCTGGTGGAGATATGAGATGG------------
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312193 126 + 130588469 CCCTGGGACGCCCCAGCAGTGCGCTGCTTACAGAGCCCCAGGGCCCAAGGCTCAGCTCTCCCCCTTAGAAGGGTAGGGCAGGCACACT-----------------AGCTGGGACCAGGAGCTGCTGGTGGAGACATGAGATGG------------
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017295 155 - 155834243 CCCTGGGATGCCCCAGCAGCTCACCGCTTACAGAGCCCCAGGGCTCAAGGCTCAGCTCTCCTCTTTAGATGAGTAGGGCAGGGGCACCAGCCCCAGTTAGATGACAGCTGACACCAGGAGCTGCTAGTGGAGACATAAGATGGGGGTCTGTGCCC
i calJac3.chr7                 I 10 C 0
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=2548.000000
s hg38.chr1_KI270714v1_random      41463 1 +     41717 T
s ponAbe2.chr1                 224083426 1 + 229942017 T
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049560 1 - 229590362 T
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934625 1 + 227556264 T
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211082173 1 - 220367699 T
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312319 1 + 130588469 T
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017450 1 - 155834243 T
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_9160            38551 1 -     74055 T
i micMur1.scaffold_9160        N 0 I 139
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=220971.000000
s hg38.chr1_KI270714v1_random      41464 132 +     41717 CTCCTGCTGTGAGGGGCTTCCCCGGACTCCACCAGGCCCTTCCTTTCCCAGAGCCTCCACGTGGGTCAGGGAGTCAAGGACGGCAGCCACCTCCTCAGTGTGGACACAGGCCCCGCCCCCACGCCCTGCAGC
s ponAbe2.chr1                 224083427 132 + 229942017 CTCCTGCTGTGAGGAGCTTCTCTGGACTCCACCAGGCCCTTCCTTTCCCAGAGCCTCCACGTGGGTCAGGGGGTCACAGATGGCAGCCACCTCCTCAGTGCGGACACAGGCCCCGTCCCCACGCCCTGCTGC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049561 132 - 229590362 CTCCTGCTGTGAGGGGCTTCTCCGGACTCCACCAGGTCCTTCCTTTCTCAGAGCCTCCACCTGGGTCAGGAGGTCAAGGACGGCAGCCACCTCCTCAGTGTGGACACAGGCCCCGCCCCCACACCCTGCTAC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934626 132 + 227556264 CTCCTGCTGTGAGGGGCTTCTCCGGACTCCACCAGGTCCTTCCTTTCTCAGAGCCTCCACCTGGGTCAGGAGGTCAAGGACGGCAGCCACCTCCTCAGTGTGGACACAGGCCCCGCCCCCACACCCTGCTAC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211082174 132 - 220367699 CTCCTGCTGTGAGGGGCTTCTCCGGACTCCACCAGGTCCTTCCTTTCTCAGAGCCTCCACCTGGGTCAGGAGGTCAAGGACGGCAGCCACCTCCTCAGTGTGGACACAGGCCCCGCCCCCACACCCTGCTAC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312320 132 + 130588469 CTCCTGCTGTGAGGGGCTTCTCTGGACTCTACCAGGTCCTTCCTTTCTCAGAGCCTCCGCCTGGGTCAGGGGGTCAAGGATGGCAGCCACCTCCTCAGTGTGGACACAGGCCCCGCCCCCACACCCTGCTAC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017451 117 - 155834243 CACCTGCTGTGAGGGGCTTCTCCTGACTCTACCAGGTCCTTCCTTTCTCAGAGCCTCCACCTG---------------GATGGTAACCACTTCCCCACTATAGACACAGGCCCTGCCCCCAGGCCCCAATGC
i calJac3.chr7                 C 0 C 0
e micMur1.scaffold_9160            38552 139 -     74055 I
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=2800.000000
s hg38.chr1_KI270714v1_random      41596 1 +     41717 C
s ponAbe2.chr1                 224083559 1 + 229942017 C
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049693 1 - 229590362 C
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934758 1 + 227556264 C
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211082306 1 - 220367699 C
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312452 1 + 130588469 C
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017568 1 - 155834243 C
i calJac3.chr7                 C 0 C 0
s micMur1.scaffold_9160            38691 1 -     74055 C
i micMur1.scaffold_9160        I 139 N 0
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=121162.000000
s hg38.chr1_KI270714v1_random      41597 79 +     41717 AGGTGAACTGACAGACACCAGGGGTAGATCTGGGGCTGCTGA-TAAAAAGGAATGAGCC-------CCCACGGCCTGTGGCAGAATC
s ponAbe2.chr1                 224083560 80 + 229942017 AGGTGAACTGACAGACACCAAGGGTAGGCCTGGGGCTGGTGATTAAAAAGGAATGAGCC-------CCCACGGCCTGCGGCAGAATC
i ponAbe2.chr1                 C 0 C 0
s rheMac3.chr1                 220049694 80 - 229590362 GGCTGAACTGACAGACACCGTGGGTAGAGCTGGGGCTGGTGATTAAAAAGGAACGAGCC-------CTCACGGCCTGTGCCAGAGTC
i rheMac3.chr1                 C 0 C 0
s macFas5.chr1                 221934759 80 + 227556264 GGCTGAACTGACAGACACCGTGGGTAGAGCTGGGGCTGGTGATTAAAAAGGAACGAGCC-------CTCACGGCCTGTGCCAGAGTC
i macFas5.chr1                 C 0 C 0
s papAnu2.chr1                 211082307 80 - 220367699 GGCTGAACTGACAGACACCGTGGGTAGAGCTGGGGCTGGTGATTAAAAAGGAACGAGCC-------CCCACGGCCTGTGCCAGAGTC
i papAnu2.chr1                 C 0 C 0
s chlSab2.chr20                125312453 80 + 130588469 GGCTGAACTGACAGACACCATGGGTAGACCTGGGGCTGGTGATTAAAAAGGAATGAGCT-------CCCACGGCCTGTGCCAGAATC
i chlSab2.chr20                C 0 C 0
s calJac3.chr7                 115017569 86 - 155834243 AGATGACCTGACAGACACCAAAGGTCGA-CAGGGGCTGGTGATTAAAAAGGAGTGAGACCCAACGGCCCATGGCCTGTGACAGAAGC
i calJac3.chr7                 C 0 I 16
e panTro4.chr1_GL389124_random     41672 970 +     50403 M

a score=10948.000000
s hg38.chr1_KI270714v1_random      41676 4 +     41717 AGGG
s panTro4.chr1_GL389124_random     42651 4 +     50403 AGGG
i panTro4.chr1_GL389124_random M 970 C 0
s ponAbe2.chr1                 224083640 4 + 229942017 AGGG
i ponAbe2.chr1                 C 0 I 18
s rheMac3.chr1                 220049774 4 - 229590362 AGGG
i rheMac3.chr1                 C 0 I 17
s macFas5.chr1                 221934839 4 + 227556264 AGGG
i macFas5.chr1                 C 0 I 17
s papAnu2.chr1                 211082387 4 - 220367699 AGGG
i papAnu2.chr1                 C 0 I 17
s chlSab2.chr20                125312533 4 + 130588469 AGGG
i chlSab2.chr20                C 0 I 17
s calJac3.chr7                 115017671 4 - 155834243 AGGG
i calJac3.chr7                 I 16 C 0

a score=1179.000000
s hg38.chr1_KI270714v1_random      41680 1 +     41717 A
s panTro4.chr1_GL389124_random     42655 1 +     50403 A
i panTro4.chr1_GL389124_random C 0 C 0
s rheMac3.chr1                 220049795 1 - 229590362 A
i rheMac3.chr1                 I 17 C 0
s macFas5.chr1                 221934860 1 + 227556264 A
i macFas5.chr1                 I 17 C 0
s papAnu2.chr1                 211082408 1 - 220367699 A
i papAnu2.chr1                 I 17 C 0
s chlSab2.chr20                125312554 1 + 130588469 A
i chlSab2.chr20                I 17 C 0
s calJac3.chr7                 115017675 1 - 155834243 G
i calJac3.chr7                 C 0 C 0
e ponAbe2.chr1                 224083644 18 + 229942017 I

a score=91938.000000
s hg38.chr1_KI270714v1_random      41681 36 +     41717 CCACCCCAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
s panTro4.chr1_GL389124_random     42656 36 +     50403 CCACCCCAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
i panTro4.chr1_GL389124_random C 0 N 0
s ponAbe2.chr1                 224083662 36 + 229942017 CCACCCCAGGCACAGCTTCCAGCCTTCTAAGGGGGA
i ponAbe2.chr1                 I 18 N 0
s rheMac3.chr1                 220049796 36 - 229590362 CCACCCCAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
i rheMac3.chr1                 C 0 N 0
s macFas5.chr1                 221934861 36 + 227556264 CCACCCCAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
i macFas5.chr1                 C 0 N 0
s papAnu2.chr1                 211082409 36 - 220367699 CCACCCCAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
i papAnu2.chr1                 C 0 N 0
s chlSab2.chr20                125312555 36 + 130588469 CCACCCCAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
i chlSab2.chr20                C 0 N 0
s calJac3.chr7                 115017676 36 - 155834243 CCGGCCTAGGCAGAGCCTCCAGCCTTCTAAGGGGGA
i calJac3.chr7                 C 0 N 0

