##maf version=1 scoring=roast.v3.3
a score=1500.000000
s hg38.chr21_GL383581v2_alt         0 1 +    116689 C
s panTro4.chr21              19503792 1 +  32799110 c
i panTro4.chr21             N 0 C 0
s nomLeu3.chr25              19929330 1 +  32716333 c
i nomLeu3.chr25             N 0 C 0
s macFas5.chr3              178933748 1 - 192294377 c
i macFas5.chr3              N 0 C 0
s papAnu2.chr3              167317089 1 - 180432695 C
i papAnu2.chr3              N 0 C 0
s chlSab2.chr2               31595837 1 -  90373283 C
i chlSab2.chr2              N 0 C 0

a score=6472.000000
s hg38.chr21_GL383581v2_alt         1 5 +    116689 ACTTG
s panTro4.chr21              19503793 5 +  32799110 acttg
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19929331 5 +  32716333 actcg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178933749 5 - 192294377 actca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167317090 5 - 180432695 ACTCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31595838 5 -  90373283 ACTCG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37401531 5 +  50472720 ACCTG
i calJac3.chr21             N 0 C 0

a score=15224.000000
s hg38.chr21_GL383581v2_alt         6 7 +    116689 GCTTCAC
s panTro4.chr21              19503798 7 +  32799110 gcttcac
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19929336 7 +  32716333 gcttcaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185097309 7 - 198365852 gctTCAA
i rheMac3.chr3              N 0 C 0
s macFas5.chr3              178933754 7 - 192294377 gctTCAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167317095 7 - 180432695 GCTTCAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31595843 7 -  90373283 GCTTCAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37401536 7 +  50472720 GCTTTAA
i calJac3.chr21             C 0 C 0

a score=791280.000000
s hg38.chr21_GL383581v2_alt        13 282 +    116689 GTCTTGAGCAATCTGCATATGCCTCCTCCCTAGGCCTCCTCCTAATGAGAGTTGATGATTGTCCTAGTGTGGGATCAGCAGGCGAGTGACTTCATGCCAGAGAGGAGTgactagtggtgatctgtggactgtttgtgacttacctgtgatgagtccagaggttgaaagatgtatttagaaac-----tatagtctgacattgccacaacatccagctacctgtccatcttgttaatgattaactttaattgtattctacaaaagttttggtctatgtgatatgttgc
s panTro4.chr21              19503805 278 +  32799110 gtcttgagcaatctgcgtatgcctcctccctaggcctcCTCCTAATGAGAGTTGATGATTGTCCTAGTGTGGGATCAGCAGGCGAGTGACTTCATGCCAGAGAGGAGTgactagtggtgatctgtggactgt----gacttacctgtgatgagtccagaggttgaaagatgtatttagaaac-----tatagtctgacattgccacaacatccaggtgcctgtccatcttgctaatgattaactttaattgtattctacaaaagttttggtctatgtgatatgttgc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34402352 283 +  48394510 gtcttgagcaatctgtatatgcctcctccctaggcctcCTCCTAATGAGAGTTGATGATTGTCCTAGTGTGGGATGAGCAGGCGAGTGACTTCATGCCAGAGAGGAGTGACTAGCGGTGATCTGTGGAC-GTTTTTGACTTACCTGTgatgagtccagaggttaaaaaatgtatttagaaact---ttatagtctgacattgccacaacatccaggtgcctgtccatcttgctaatgattaactttcattgtattctacaaaagttttggtctgtgtgatacgttgc
i ponAbe2.chr21             N 0 C 0
s nomLeu3.chr25              19929343 284 +  32716333 gtcttgagcaatctgtgtatgcctcctccctaggcctcCTCCTAATGAGAGCTGGTGATTGTCCTAGTGTGGGATGAGCAGGCGAGTGACTTCATGCCAGAGAGGAGAgactagtggtgatctgtggactgtttgtgacttacctgtgatgagtccagaggttgaaagatatatttagaaact---ttatagtctgacgttgccacgacatccaggtgcctgtccatcttgctaacgattaacttttatcgtattctacaaaagttttggtctgtgtgatacgttgc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185097316 284 - 198365852 GTCTAGAGCAATCTGTGTGTGCCCCCTCCCTAGG---CCTCCTAATGAGAGTTGATGATTGCCCTAGTGTGAGATGAGCAGGCAAGTGACTTCATACCAGAGAGGAGTgactagtggtgatctgtggactgtttgtgacttacctgtaatgagtccagaggttgaacgatacatttagaaactttattatagtttgacgttgccacaacatccaggtgcctgtccatcttgctaacgattaacttttattgtattctacaaaagttttggtctgtgtgagatattgc
i rheMac3.chr3              C 0 I 1
s macFas5.chr3              178933761 284 - 192294377 GTCTAGAGCAATCTGTGTGTGCCCCCTCCCTAGG---CCTCCTAATGAGAGTTGATGATTGCCCTAGCGTGAGATGAGCAGGCAAGTGACTTCATACCAGAGAGGAGTgactagtggtgatctgtggactgtttgtgacttacctgtaatgagtccagaggttgaacgatacatttagaaactttattatagtttgacgttgccacaacatccaggtgcctgtccatcttgctaacgattaacttttattgtattctacaaaagttttggtctgtgTGAGATATTGC
i macFas5.chr3              C 0 I 6706
s papAnu2.chr3              167317102 281 - 180432695 GTCTAGAGCAACCTGTGTGTGCCCCCTCCCTAGG---CCTCCTAATGAGAGTTGATGATTGCCCTAGTGTGAGATGAGCAGGCAAGTGACTTCATACCAGAGAGGAGTGACTAGTGGTGATCTGTGGACTGTTTGTGACTTACCTGTAATGAGTCCAGAGGTTGAACGATACATTTAGAAACT---TTATAGTTTGACGTTGCCACAACATGCAGGTGCCTGTCCATCTTGCTAACGATTAACTTTTATTGTATTCTACAAAAGTTTTGGTCTGTGTGAgatattgc
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31595850 281 -  90373283 GTCTAGAGCAACCTGTGTGTGCCCCCTCCCTAGG---CCTCCTAATGAGAGTTGATGCTTGCCCTAGTGTGAGATGAGCAGGCGAGTGACTTCATACCAGAGAGGAGTgactagtggtgatctgtggactctttgtaacttacctgtagtgagtccagaggttgaaagatacatttagaaact---ttatagtttgacgttgccacaacatctaggtgcctgtccatcttgctaatgattaacttttattgtattctacaaaagttttggtctgtgtgagacattgc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37401543 269 +  50472720 GTCTTGAGCAACATGTGTATGTC-CCTCCCTAGGCCTCCTTCTAATGAGAGTTGATGATTGCCCCAGTGTGGGATAGGCAGGCCGGTAACTTCATACCAGAGAGGAATggctagtggtggtctgtggactgtctgtgagtcagctgtgctaagtccagaggttgagagatttatttaaaatct---ttatagttggacgttgccacaacatccaggtgcctgtacatcttgctaatgattaacttttattgtattctacaaaagttttggtct--------------
i calJac3.chr21             C 0 C 0

a score=17779.000000
s hg38.chr21_GL383581v2_alt       295 12 +    116689 aaaataaaaaaa
s panTro4.chr21              19504083 12 +  32799110 aaaataaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34402635 12 +  48394510 aaaataaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19929627 12 +  32716333 aaaataaaaaTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185097601 11 - 198365852 -aaaaaaaaaaa
i rheMac3.chr3              I 1 I 2089
s papAnu2.chr3              167317384 11 - 180432695 -aaaaaaaaaaa
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31596131 12 -  90373283 aaaaaaaaaaaa
i chlSab2.chr2              C 0 C 0
e calJac3.chr21              37401812  0 +  50472720 C
e macFas5.chr3              178934045 6706 - 192294377 I

a score=133584.000000
s hg38.chr21_GL383581v2_alt       307 90 +    116689 ttttaaaaagtgaggccaggctcggtggctcacacctgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggtcaggag
s panTro4.chr21              19504095 90 +  32799110 ttttaaaaagtgaggccaggctcggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34402647 90 +  48394510 taaaaaAAAGTGAggccgggcttggtggctcacgcttgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19929639 90 +  32716333 TTTTTAAAAGTGAggccgggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggag
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167317395 88 - 180432695 aaaaaaaaaaagaagccgggctcggtggctcacacctgtaatcccagcac--tgggaggacgaggcgggtgggtcacctgaagtcaggag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31596143 85 -  90373283 ---aaagaaaaagggccgggcttggtagctcacacctgtaatcccagcac--tgggaggccgaggcgggtgggtcacctgaggtcaggag
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37401812 77 +  50472720 -------------ggccgggcgtggtggctcacgtctgtaattttagcactttgggaggctgaggcaggtggatcacctgaggtcaggag
i calJac3.chr21             C 0 I 237
e rheMac3.chr3              185097612 2089 - 198365852 I
e macFas5.chr3              178934045 6706 - 192294377 I

a score=450430.000000
s hg38.chr21_GL383581v2_alt       397 300 +    116689 ttcaagaccaggctggtcaacaatgatgaaaccccgtctctaccaaaaatacaaaaattag-ggggcgtgatggtacacacctgt-gtcccagctactcaggaggctgaagccgaagaatcacttaaactcaggaggcagaggtgcagtaagctgagatcacaccactgcactccagcctgggcgacaagagcaagactctatctcaaaaaaa---caaaaacaaa------caaataaaaaaactggctccattgatcctttgaaaagtaGTAGCAgctgggca-cggtggctcatgcctgtaatcccatt
s panTro4.chr21              19504185 306 +  32799110 ttcaagaccaggctggtcaaca-tgatgaaaccccgtctctaccaagaatacaaaaattagcggggcgtgatggtacacacctgt-gtcccagctactcaggaggctgaggcagaagaagcacttaaactcaggaggcataggtgcagtaagctgagatcacgccactgcactccagcctgggcgacaagagcaagactctatctcaaaaaaa---caaaaacaaaaacaaacaaataaaaaaactggctccattgatcctttgaaaagtaGTAGCAgctgggca-cggtggctcatgcctgtaatcccatc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34402737 300 +  48394510 ttcaagaccaggctggtcaaca-tgatgaaaccccgtctctaccaaaaatacaaaaattagcggggcgtggtggtacacacctgt-gtcccagctactcgggaggctgaggcagtagaatcacttaaattcaggaggcagaggtgcagtaagctgagatcacgccactgcactccagcctgggcaacaagagcaagactctatctcaaaaaaa---caaaaacaaa------caaat-aaaaaaCTAGGGCCATCCATCCTTTGAAAAGTAGTAGCAGCTGGGCATTTAtggctcatgcctgtaatcccatc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19929729 299 +  32716333 ttcaagaccaggatggtcaaca-tgatgaaatcctgtctctaccaaaaatacaaaaattagcggggcgtggtggtacacacctgt-gtcccagctactcaggagggtgaggcaggagaatcacttaaactcgggaggcagaggtgcagtaagctgagatcacgccactgcactccagcttgggcgacaagagcaagactctatctc-aaaaaa---caaacaaaaa------caaacaaaaaaaCTGGCTCCATCGATCCTTTGAAAAGTAGTAGCAgctgggca-cagtggctcatgcctgtaatcccatc
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167317483 299 - 180432695 ttcaagaccaggctgatcaaca-tgatgaaaccccatctctaccgaaaatacaaacattagcggGGTGTGCTGGTACACACCtat-gtcctagctacttgggaggctgaggcaggagaatcacttaaactcaagaggcagaggtgcagtaagctgagatcaggccactgcactccagcctgcgcaacaagagcaagactgcatctcaaaaaaaacccaaaaacaaa------caaa--agaaaactggcTCTGTCGCTCCTTTGAAAagtggtag--gccgggcg-cggtggctcaagcctgtaatcccagc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31596228 301 -  90373283 ttcaagactaggctgatcaaca-tgatgaaaccccatctctaccgaaaagacaaacgttagcggggtgtggtggtacacacctgt-gtcctagctacttgggaggctgaggcaggagaatcacttaaactcaggaggcaaaggtgcaataagctgagatcacaccactgcactccagcctgggcgacaagagcaagactgcatctcaaaaaaaccccaaaaacaaa------caaa--agaaaaCTGGCTCTGTCGCTCCTTTGAAAAGTAGCAGCAGCTGGGCA-CGGTGGGTCACACCCGTAATCCCATt
i chlSab2.chr2              C 0 I 1671
s calJac3.chr21              37402126 286 +  50472720 ttcaagaccagcctggccaacg-tggtgaaaccctgtctctaccaaaaatacaaaaattagctgtgcatggtgatgcatgcctgtggttccagctacttgggaggctggggcaggagaatcacttgaatttaggaggcagacatgcagtgagccgagatcacgccgctgcactccagcctgtgtgacaagagcaagactctgtctcaaaaaaa------------a------------aaaCACTTGGTTCCATTGATCCTTTGGAAATTAGTAGTAgctgggct-cagtggcacacacctgtaatcccagc
i calJac3.chr21             I 237 C 0
e rheMac3.chr3              185097612 2089 - 198365852 I
e macFas5.chr3              178934045 6706 - 192294377 I

a score=-1390.000000
s hg38.chr21_GL383581v2_alt       697 1 +    116689 -a
s panTro4.chr21              19504491 1 +  32799110 -a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34403037 1 +  48394510 -a
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19930028 1 +  32716333 -a
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167317782 1 - 180432695 -a
i papAnu2.chr3              C 0 I 2989
s calJac3.chr21              37402412 1 +  50472720 c-
i calJac3.chr21             C 0 C 0
e rheMac3.chr3              185097612 2089 - 198365852 I
e chlSab2.chr2               31596529 1671 -  90373283 I
e macFas5.chr3              178934045 6706 - 192294377 I

a score=91295.000000
s hg38.chr21_GL383581v2_alt       698 29 +    116689 ctttgggaggcagaggtgagcagatcacc
s panTro4.chr21              19504492 29 +  32799110 ctttgggaggcagaggtgagcagatcacc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34403038 29 +  48394510 ctttgggaggcagaggtgagcagatcaCC
i ponAbe2.chr21             C 0 M 2924
s nomLeu3.chr25              19930029 29 +  32716333 ctttgggaggcagaggtgggcggatcatc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185099701 29 - 198365852 ctttgggaggcagaggtgagtggatcacc
i rheMac3.chr3              I 2089 C 0
s macFas5.chr3              178940751 29 - 192294377 ctttgggaggcagaggtgagtggatcacc
i macFas5.chr3              I 6706 C 0
s papAnu2.chr3              167320772 29 - 180432695 ctttgggaggcagaggtgggtggatcacc
i papAnu2.chr3              I 2989 C 0
s chlSab2.chr2               31598200 29 -  90373283 ctttgggaggcagaggtgggtggatcacc
i chlSab2.chr2              I 1671 C 0
s calJac3.chr21              37402413 29 +  50472720 ctttggaaggcagaggtgggcggatcacc
i calJac3.chr21             C 0 C 0

a score=213066.000000
s hg38.chr21_GL383581v2_alt       727 100 +    116689 tgaggtcagaagttcca---gagaccagtgtggccaacatgttaaaaaccccttctttactaaaactacgaaaattacccgggcgtggtggttggcgcctgta
s panTro4.chr21              19504521 100 +  32799110 tgaggtcagaagttcca---gagaccagtgtggccaacacgttaaaaaccccttctttactaaaactacgaaaattacccgggcgtggtggttggcgcctgta
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19930058 100 +  32716333 tgaggtcagaagttcca---gagaccagcctggccaacatggtgaaaacctcgtctttactaaaactacaaaaattacccgggcgtggtggtcggcagctgta
i nomLeu3.chr25             C 0 M 100
s rheMac3.chr3              185099730 103 - 198365852 tgaggtcagaaattccagatgagaccagcctggccaacatgttgacaaccccgtctttacggaaactacaaaaattacccgggcatggtagtcggcgcctgta
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178940780 103 - 192294377 tgaggtcagaaattccagatgagaccagcctggccaacatgttgacaaccccgtctttacggaaactacaaaaattacccgggcatggtagtcggcgcctgta
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167320801 103 - 180432695 tgaggtcagaaattccagatgagaccagcctggccaacatgttgacaACCCCGTCTTTAcggaaactacaaaaattacctgggcatggtagtcggcgcctgta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31598229 103 -  90373283 tgaggtcagaaattccacatgagaccagcctggccaacatgttgacaaccccgtctttactgaaactacaaaaattacccgggcatggtagtcggcgcctgta
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37402442 103 +  50472720 tgaggttggaagttccagaccagagcagcctggccaacatgttgaaaaccccgtttctactaaagctacaaaaattagccaggtatggtgctgggctcccgta
i calJac3.chr21             C 0 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M

a score=189726.000000
s hg38.chr21_GL383581v2_alt       827 119 +    116689 atcccagctacctgggaggctgaggcaggagaatcacttgaacctgggagg-ggaggttgcagtgagccgaaatcatgcaactgcactccagcctgggtgacagagcaagactctgtctc
s panTro4.chr21              19504621 119 +  32799110 atcccagctacctgggaggctgaggcaggagaatcacttgaacctgggagg-ggaggttgcggtgagccaaaatcaggcaactgcactccagcctgggcgacagagcaagactctgtctc
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185099833 118 - 198365852 attccagctacttgggaggctgaggcaggagagtcgcttgaacctgggagacagaggttgcagtgacccgagatcaggcaactgctctctagccggggcggcagagcgaga--ctgtctc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178940883 118 - 192294377 attccagctacttgggaggctgaggcaggagagtcgcttgaacctgggagacagaggttgcagtgacccgagatcaggcaactgcactctagcctgggcggcagagcgaga--ctgtctc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167320904 120 - 180432695 attccagctacttgggaggctgaggcaggagagtcgcttgaacctgggagacagaggttgcagtgagccgagatcaggcaactgcgctctagcctgggcggcagagcgagactctgtctc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31598332 120 -  90373283 attccagctacttgggaggctgaggcaggagagtcgcttgaacctgagaggcggaggttgcagtgagcagagatcaggcaactgcactgtagcctcggcggcagagcgagactctgtctc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37402545 120 +  50472720 atcccagctattctggaggctgagggaggagaatcgccttaacctgggaggcagagattgcagtgagctgagatcatgccactgcactccagcttggatggcagagaaagactctgtctc
i calJac3.chr21             C 0 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e nomLeu3.chr25              19930158 100 +  32716333 M

a score=191166.000000
s hg38.chr21_GL383581v2_alt       946 119 +    116689 ----aaaaaaaga--------aaaaaaaagaaaa------------------------gaaaaGTAGTGTAGTGCTTTAAACTAATCTCTATTTTGCAACTATTTGAACAT-TTTCACATTAAACAGCTTAAAAACAAACCTAATGGATATCTTCA
s panTro4.chr21              19504740 112 +  32799110 ----aaaaaaa--------------aaaagaaa-------------------------gaaaaGTAGTGTAGTGCTTTAAACTAATCTCTATTTTGCAACTATTTGAACAT-TTTCATATTAAACAGCTTAAAAACAAACCTAATGGATATCTTCA
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185099951 115 - 198365852 ----aaaaaag----------agaaaaaagaaaa------------------------gaaaaGTAGTG--GTGCTTTAAACTAATCTCTATTTTGCAACTATTTGAGCAT-TTTCATATTAAACAGCTTAAAAACAAACCTAATGGATATTTTCA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178941001 115 - 192294377 ----aaaaaag----------agaaaaaagaaaa------------------------gaaaaGTAGTG--GTGCTTTAAACTAATCTCTATTTTGCAACTATTTGAGCAT-TTTCATATTAAACAGCTTAAAAACAAACCTAATGGATATTTTCA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167321024 115 - 180432695 ----aaaaaag----------agaaaaaagaaaa------------------------gaaaagtagtg--gTGCTTTAAACTAATCTCTATATTGCAACTATTTGAGCAT-TTTCATATTAAACAGCTTAAAAACAAACCTAATGGATATTTTCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31598452 111 -  90373283 ----aaaaa--------------aaaaaagaaaa------------------------GTAAAGTAGTC--ATGCTTTAAACTAATCTCTATTTTGCAACTATTTGAGCAT-TTTCATATTAAACAGCTTAAAAACAAACCTAATGGATATTTTCA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37402665 125 +  50472720 ----acaaaaaaaaaaaagagagaaaaatgaaaa------------------------GAAAACTAGTA--GCGCTTTAAACTAATCTCTATTTTGCAACTATTTGAACAT-TTTCATATTAAACAGCTTAAAAATAAACCCAATGGATGTTTTCA
i calJac3.chr21             C 0 M 3045
s canFam3.chr31              28022403 134 +  39895921 aaagaaagaaa----------gaaagaaagaaagCTGCTCCTTCGTCATAGATCCTTTGAAAAATAGCA--CCATGTTATGCTAATCTC----TTGTGAATATTTAAAATTCTTTTATAATAAACCATT---AAAAAAACT---GGGATATTTTTA
i canFam3.chr31             N 0 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e nomLeu3.chr25              19930158 100 +  32716333 M

a score=141526.000000
s hg38.chr21_GL383581v2_alt      1065 87 +    116689 AAAGAAACACTCTTTTAGTCAAAACACAAAGTGAAAATATTCACAATGATTATATGGCAAATGGGTGGTAGAAAGGTTTTCACACTT
s panTro4.chr21              19504852 87 +  32799110 AAAGAAACACTCTTTTAGTCAAAACACAAAGTGAAAATATTCACAATGATTATATGGCAAATGGGTGGTAGAAAGGTTTTCACACTT
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185100066 87 - 198365852 AGAGAAACCCTTTTTTAGTGAAAAGACAAAGTGAAAATATTCACAATGATTATATGGCAAATGGGTGGTAGAAAGGTTTTCACACTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178941116 87 - 192294377 AGAGAAACCCTTTTTTAGTGAAAAGACAAAGTGAAAATATTCACAATGATTATATGGCAAATGGGTGGTAGAAAGGTTTTCACACTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167321139 87 - 180432695 AGAGAAACCCTTTTTTAGTGAAAACACAAAGTGAAAATATTCACAATGATTATATGGCAAATGAGTGGTAGAAAGGTTTTCACACTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31598563 87 -  90373283 AGAGAAACCCTTTTTTAGTGAAAACACAAAGTGAAAATATTCACAATGATTTTATGGCAAATGGGTGGTAGAAAGGTTTTCACACTT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28022537 83 +  39895921 AGAGAAAC----TCCTAGTCCAAGCACAGAGTGAAACTATTAACAATGGTTATATAGTAAATGGGTAGTAGAAAAATTTCCATGCTT
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e nomLeu3.chr25              19930158 100 +  32716333 M

a score=147784.000000
s hg38.chr21_GL383581v2_alt      1152 77 +    116689 TCCCATAACTTACCGGT--------GTAATTTTGAAATTGCTTTTATGGTCAGAGAAAAAAA---AAA-GTGTTGGAAAC----ttttttttt
s panTro4.chr21              19504939 78 +  32799110 TCCCATAACTTACCGGT--------GTAATTTTGAAATTGCTTTTATGGTCAGAGAAAAAAA---AAAAGTGTTGGAAAC----ttttttttt
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19930258 77 +  32716333 TCCCATAACTTACCAG---------GTAATTTTGAAATTGCTTTTATGGTCAAAGAAAAAAA---AAAAGTGTTGGGAAC----ttttttttt
i nomLeu3.chr25             M 100 C 0
s rheMac3.chr3              185100153 80 - 198365852 TCCCATAACTTACCAGT--------GTAATTTTGAAATTGCTTTTATGGTCAGAGAAAAAAA---AAA--TGTTGGAAACTCttttttttttt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178941203 78 - 192294377 TCCCATAACTTACCAGT--------GTAATTTTGAAATTGCTTTTATGATCAGAGAAAAAAA---AAA--TGTTGGAAACTC--ttttttttt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167321226 75 - 180432695 TCCCATAACTTACCAGT--------GTAATTTTGAAATTGCTTTTAtggtcagag-aaaaaa---aaa--tgttggaaac----ttttttttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31598650 76 -  90373283 TCCCATAACTTACCAGT--------GTAATTTTGAAATTGCTTTTATGGTCAGAGAAAAAAA---AAG--TGTTGGAAAC----ttttttttt
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28022620 87 +  39895921 TCTCATAATTTTCAAGTATCCTTCAGTAATCATGAGATTGGTTTTATGGTCAGAGGGAAAAATATGAA--TATCGAAAAC----AATTTTTTT
i canFam3.chr31             C 0 I 1
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=549364.000000
s hg38.chr21_GL383581v2_alt      1229 308 +    116689 tttttttt------gagatagtatctctctccatcgcccaggctgcagtgcagtggcatgatcacagctcactgcagtctcaacctcttgggctcaagccatcctcccacctcagcctcctgagtagctgggactacacgtgcacgccatcatacctggctaatttttgtatttttttgtagagatgaggtttcaccgtgtttcccaggctggttttgaactcctggggtcaagagatccacccgcctcagcctcccaaagtgctaggattatagatgtgaaccacccagcctggcTCCGGAAACAGATTTTTT
s panTro4.chr21              19505017 314 +  32799110 ttttttttttttttgagatagtatctctctccatcgcccaggctgcagtgcagtggcatgatcacagctcactgcagtctcaacctcttgggctcaagccatcctcccacctcagccttctgagtagctgggactacacgtgcatgccatcatacctggctaatttttgtatttttttgtagagatgaggtttcaccgtgtttcccaggctggttttgaactcctggggtcaagagatccacccgcctcagcctcccaaagtgctaggattatagatgtgaaccacccagcctggcTCCGGAAACAGATTTTTT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19930335 307 +  32716333 ttttttt-------gagatagtatctctctccatcgcccaggctgcagtgcagtggcatgatcacagctcactgcagcctcaacctctcgggctcaagccatcctcccacctcagccttctgagtagctgggactacaggtgcacaccatcatacctggctaatttttgtatttttttgtagagatggggtttcaccgtgtttcccaggctggttttgaactcctggggtcaagagacccacccacctcagcctcccaaagtgctaggattatagatgtgaaccacccagcctggcTCCGGAAACAGATTTTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185100233 302 - 198365852 tttttttt------gagatagta----tctccatcgttcaggctgcagtgcagtggcatgatcacagctcactgcagcctcaacctcttgggctcgagccttcctcccacctcagccttctgagtagctgggactacaggtgcacgccatcatacctggctaatttttgta-ttttttgtagagatggggtttcaccatgtttcccaggcgggtcttgaactcctagggtcaagagatccacccgcctcagcctcccaaagtgctaggattgtagatgtgaagc-cccagcctggcACTGGAAGCAAATTTTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178941281 302 - 192294377 tttttttt------gagatagta----tctccatcgttcaggctgcagtgcagtggcatgatcacagctcactgcagcctcaacctctcgggctcgagccttcctcccacctcagccttctgagtagctgggactacaggtgcacgccatcatacctggctaatttttgta-ttttttgtagagatggggtttcaccgtgtttcccaggcgggtcttgaactcctagggtcaagagatccacccgcctcagcctcccaaagtgctaggattgtagatgtgaagc-cccagcctggcACTGGAAGCAAATTTTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167321301 302 - 180432695 tttttttt------gagatagta----tctccatcgctcaggctgcagtgcagtggcatgatcacagctcactgcagcctcaacctctcgggctcgagccttcctcccacctcagccttctgagtagctgggactacaggtgcacgccatcatacctggctaatttttgta-ttttttgtagagatggggtttcaccgtgtttcccaggcgggtcttgaactcctagggtcaagagatccacccgcctcagcctcccaaagtgctaggattgtagatGTGAAGC-CCCAGCCTGGCACTGGAAGCAAATTTTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31598726 302 -  90373283 tttttttt------gagatagta----tctccatcgctcaggctgcagtgcagtggcatgatcacagctcactgcagcctcaacctctcgggctcgagccttcctcccacctcagccttctgagtagctgggactacaggtgcacgccatcatacctggctaatttttgta-ttttttgtagagatggggtttcaccgtgtttcccaggcaggtcttgaactcctgggatcaagagatccacccgcctcagcctcccaaagtgctaggattgtagatgtgaAGC-CCCAGCCTGGCACTGGAAGCAAATTTTTT
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28022707   1 +  39895921 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=173412.000000
s hg38.chr21_GL383581v2_alt      1537 79 +    116689 AAAGGGAGAC--ATAGTATCTATCCCTTAGAGTTC-TGTAAGAGTAGAATATGTAAAATATGGGACCTGTGGCAATTTGTAG
s panTro4.chr21              19505331 79 +  32799110 AAAGGGAGAC--ATAGTATCTATCCCTTAGAGTTG-TGTAAGGGTAGAATATGTAAAATATGGGACCTGTGGCAATTTGTAG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19930642 79 +  32716333 AAAGGGAGAC--ATAGTATCTATCCCTTAGAGTTG-TATAAGGGTAGAATATATAAAATACGGGACCTGTGGCAATTTGTAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185100535 79 - 198365852 AAAGGGAGAC--ATAGTATCTATCCCTTAGAGTTG-TATAAGGGTAGAATATATAAAATATGGGACCTGAGGCAATTTGTAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178941583 79 - 192294377 AAAGGGAGAC--ATAGTATCTATCCCTTAGAGTTG-TATAAGGGTAGAATATATAAAATATGGGACCTGAGGCAATTTGTAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167321603 79 - 180432695 AAAGGGAGAC--ATAGTATCTATCCCTTAGTGTTG-TATAAGggtagaatatataaaatatgggaCCTGAGGCAATTTGTAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31599028 79 -  90373283 AAAGGGAGAC--ATAGTATCTATCCCTTAGAGTTG-TATAAGGGTAGAATATATAAAATATGGGACCTGAGGCAATTTGTAG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28022708 82 +  39895921 AAAAGAAAACTTATAGTATCTATGCCTTAGAGTTGTTATAAGGAGAACATATGTAAAATATTGGACCTGGTCTAAATTGTAG
i canFam3.chr31             I 1 I 749
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=909755.000000
s hg38.chr21_GL383581v2_alt      1616 503 +    116689 CCATGAGCTGTTAAGTAGTGGCCGTTTGCGCTAGATAGAAAAATGTAACCAACAGCACAAGTGCAGTAAATCAACTGAC----CAGTTAGTTACCTGAGTGTTGAGGAATTAAGGCTTCTATTTGTAATTGTAGCAGGTGCTGCTGACTTTTTCAGGGGATTGGATATGTACTGTGCCACAGAATTTTTTATCATTATTTGCTGACTTGAACAGCCAGAGCTTCTCATATGCTTAGAGACCACCGAGAAAGACA--GTAAGTCCCCAGCAACTTAAAAACCATTGCATGTGAATGTCCACTGGGTAAGCTCCTGAGTGTTCATAATCTCAGCAAGTGAAAATATCATGTAGCTGGAATGCTTTTGCCACCTTTATAAACGATCATGATAGTaacatttattggtcagacgagatgccaagtgctttatatacattacctctcttaattttctcagccattctttcgaactaggttatatctctagtttacTTCCTGGAAAGTCAAACCT
s panTro4.chr21              19505410 503 +  32799110 CCATGAGCTGTTAAGTAGTGGCCGTTTGCACTAGATAGAAAAATGTAACCAACAGCACAAGTGCAGTAAATCAACTGAC----CAGTTAGTTACCTGAGTGTTGAGGAATTAAGGCTTCTATTTGTAATTGTAGCAGGTGCTGCTAACTTTTTCAGGGGATTGGATATGTACTGTGCCACAGAATTTTTTATCATTATTTGCTGACTTGAACAGCCAAAGCTTCTCATATGCTTAGAGACCACCGAGAAAGACA--GTAAGTCCCCAGCAACTTAAAAACCATTGCATGTGAATGTCCACTGGGTAAGCTCCTGAGTGTTCATAATCTCAGCAAGTGAAAATATCATGTAGCTGGAATGCTTTTGCCACCTTTATAAACGATCATGATAGTaacatttattggtcagacgagatgccaagtgctttatatacattacctctcttaattttcttagccattctttcgaactaggttatatctctattttacTTCCTAGAAAGTCAAACCT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19930721 507 +  32716333 CAATGCCCTGTTAAGTAGTGGCGGTTTGCTCTAGGTAGAAAAAGGTAACCAACAGCACAAGTGCAGTAAATCAACTGACTGTTCAGTTAGTTACCTGAGTGTTAAGGAATTAAGGCTTCTATTTGTAATGGTAGCAGCTGCTGCTGACTTTTTCAGGGGATTGGGTATGTACTGTGCCACAGAATTTTTTATCATTATTTGCTGACTTGAACAGCCAAAGCTTTTCATATGCTTAGAGACCACCGAGAAAGACA--GTAAGTCCCCAGCAACTTAAAAACCATTGCATATGAATGTCCACTGGGTAGGCTCCTAAGTGTTCATAATCTCAGCAAGTGAAAATATCACGTAGCTGGAATGCTTTTGCCACCTTTATAAATGATCATGATAGTaacatttattggtcagacgagattccaagtgctttatatacattacctctcttaattttctcagccattccttcgaactaggttatatctctatttcacTCCCTGGAAAGTCAAACCt
i nomLeu3.chr25             C 0 I 1060
s rheMac3.chr3              185100614 509 - 198365852 CAATGCCCTGTTAAGTAGTGGCCATTTGCTGTAGGTAGAAAAATGTAACCAACAGCACAAGTGCAGTAAGTCAACTGACTGTTCAGCTAGTTACCTGAGTGTTGAGGAATTAAGGCTTCTATTTGTAATTGTAGCAACTGCTGCAGACTTTTTCAGGGGATTGGGTATGTACTGTACCACAGAATTTTTTATCATTATTTGCTGACTTGAACAGCCAAAGCTTCTCATATGCTTAGAGGCCACCGAGAAAGACAGTGTAAGTCCCTAGCAACTTAAAAACCATTGCATATGAATGTCCACTGGGTACGATCCCGAGTGTTCGTAATCTCAGCAAGTGAAAATATCATGTAGTTGGAATGCTTTTGCCACCTTTATAAATGATCATGATAGTaacatttattggtcagacgagatgccaagtgctttatatacattacccctcttaattttctcagccattctttgaaactaggttatatctccattttacTCCCTAGAAAGGCAAACCG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178941662 509 - 192294377 CAATGCCCTGTTAAGTAGTGGCCATTTGCTGTAGGTAGAAAAATGTAACCAACAGCACAAGTGCAGTAAGTCAACTGACTGTTCAGCTAGTTACCTGAGTGTTGAGGAATTAAGGCTTCTATTTGTAATTGTAGCAACTGCTGCAGACTTTTTCAGGGGATTGGGTATGTACTGTACCACAGAATTTTTTATCATTATTTGCTGACTTGAACAGCCAAAGCTTCTCATATGCTTAGAGGCCACCGAGAAAGACAGTGTAAGTCCCTAGCAACTTAAAAACCATTGCATATGAATGTCCACTGGGTACGATCCCGAGTGTTCGTAATCTCAGCAAGTGAAAATATCATGTAGTTGGAATGCTTTTGCCACCTTTATAAATGATCATGATAGTaacatttattggtcagacgagatgccaagtgctttatatacattacccctcttaattttctcagccattctttgaaactaggttatatctccattttacTCCCTAGAAAGGCAAACCG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167321682 509 - 180432695 CAATGCCCTGTTAAGTAGTGGCCATTTGCTGTAGGTAGAAAAATGTAACCAACAGCACAAGTGCAGTAAGTCAACTGACTGTTCAGCTAGTTACCTGAGTGTTGAGGAATTAAGGCTTCTATTTGTAATTGTAGCAGCTGCTGCAGACTTTTTCAGGGTATTGGGTATGTACTGTACCACagaattttttatcattatttgctGACTTGAACAGCCAAAGCTTCTCATATGCTTAGAGGCCACCGAGAAAGACAGTGTAAGTCCCTAGCAACTTAAAAACCATTGCATATGAATGTCCACTGGGTACGATCCCGAGTGTTCGTAATCTCAGCAAGTGAAAATATCATGTAGTTGGAATGCTTTTGCCACCTTTATAAATGATCATGATAGTAACATTTATTGGTCAGACGAGATGCCaagtgctttatatacattaCCCCTCTTAGTTTTCTCAGCCATTCTTTGAAACTAGGTTATATCTCCATTTTACTCCCTAGAAAGGCAAACCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31599107 505 -  90373283 CAATGCCCTGTTAAGTAGTGGCCATTTGCTGTAGGTAGAGAAATGTAACCAACAGCGCAAGTGCAGTAAGTCAACTGACTGTTCAGCTAGTTACCTGAGTGTTGAGGAATTAAGGCTTCTATTTGTAATTGTAGCAGCTGCTGCAGACTTTTTCAGGGGATTGGGTATGTACTGTACCACAGAATTTTTTATCATTATTTGCTGACTTGAACAGCCAAAGCTTCTCATATGCTTAGAGGCCACCGAGAAAGACAGTGTAAGTCCCCAGCAACTTAAAAACCATTGCATATGAATGTCCAGTGGGTACGATCCTGAGTGTTCATAATCTCAGCAAATGAAAATATCATGTAGTTGGAATGCTTTTGCCACCTTTATAaatgatcatcatagtaacatttattggtcagacgagatgccaagtgctttatatacattacccctcttaattttctcagccattctttcaaactag----tatctccattttacTCCCTAGAAAGTCAAATCG
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28022790 749 +  39895921 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=706608.000000
s hg38.chr21_GL383581v2_alt      2119 425 +    116689 TTCTTGATAGGAAGAGCCAAATAATCTAGGTCAATAACTTGATGTCCAGttgttgt------tgt-tgtttttgagacggagtctcgccctgatgcccaggtgggaatgcagtggcgctatctcggctcactgcaacctctatctcccaggttcaagcgattctcctgtctcagcctcccaagtagctgggactataggcacctgccaccatg-ctttgctaatttttatatttttagtagggacggggtttcaccacgttggctaggctggtctcgaactcctgacctcaagtgatccccaccgcacccccccccgccaacccccgccagcctcagcctcccaaagtgttgggattacaggcatgagctaccatgcctggccTAGTATTTCTTGAAGAGAACAATTTCCTGGTTATGGCTGAGGAATCAGAA
s panTro4.chr21              19505913 423 +  32799110 TTCTTGATAGGAAGAGCCAAATAATCTAGGTCAATAACTTGATGTCCAGttgttgt------tgt-tgtttttgagacggagtctcgccctgacgcccaggtgggaatgcagtggcgctatctcggctcactgcaacctctatctcccaggttcaagcaattctcctgtctcagcctcccaagtagctgggactataggcacctgccaccatg-ctttgctaatttttatatttttagtagggatggggtttcaccacgttggctaggctggtctcgaactcctgacctcaagtgatccccgccgcacccccccc--ccaacccccgccggcctcagcctcccaaagtgttgggattacaggcatgagctaccatgcctggccTAGTATTTCTTGAAGAGAACAATTTCCTGGTTATGGCTGAGGAATCAGAA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19932288 401 +  32716333 TTCTTGATAGGAAGAGCCAAATAACCTAGGTCAATAACTTGATGTCCAGTTGTTGT------TTTCCCCCtttgagacagagtcttgctctgtcacccagggtggagggggggggcgccatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactgtaggcacctgccaccatgcccttgctaatttttatatttttagtagggatggggtttcaccatgttggctaggctggtctcaaactcttgacctcaagtgatcccc--------------------------cctgcctcggcctcccaaagtgttgggattacaggcataagctaccatgcctggccTAGTATTTCTTGAAGAGAACAATTTCCTGGTTATGGCTGAGGAATCAGAA
i nomLeu3.chr25             I 1060 C 0
s rheMac3.chr3              185101123 405 - 198365852 TTCTTGATAGGAAGAGCCAAATAATCTAGGTCAATAACTTGATGTCCAGtttttgttgctgctgt-tgtttttgggacagagtctcgctttgtcgcccaggctggaatgcagtggcacgatcttggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcaacctcccaagtagctgggactataggcacctgccaccatg-ccttgctaatttttgtatttttagtagggacggggtttcaccatgttggccaagctggtctcgaacttctgacatcaagtgatcacc--------------------------ctggcctcggcctcccaaagtgttgggattacaggcgtgagctaccatgcctggccTAGTATTTCTTGAAGAGAACAATTTCCTGGTTATGGCTGAGGAATCAGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178942171 405 - 192294377 TTCTTGATAGGAAGAGCCAAATAATCTAGGTCAATAACTTGATGTCCAGtttttgttgctgctgt-tgtttttgggacagagtctcgctttgtcgcccaggctggaatgcagtggcacgatcttggttcactgcaacttctgcctcccaggttcaagcgattctcctgcctcaacctcccaaatagctgggactataggcacctgccaccatg-ccttgctaatttttatatttttagtagggacggggtttcaccatgttggccaagctggtctcgaacttctgacctcaagtgatcacc--------------------------ctggcctcggcctcccaaagtgttgggattacaggcgtgagctaccatgcctggccTAGTATTTCTTGAAGAGAACAATTTCCTGGTTATGGCTGAGGAATCAGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167322191 405 - 180432695 TTCTTGATAGGAAGAGCCAAATAATCTAGGTCAATAACTTGATGTccagtttttgttgctgttgt-tgtttttgggatggagtctcgctttgtcgcccaggctggaatgcagtggcacgatcttggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcaacctcccaagtagctgggactataggcacctgccaccatg-ccttgctaatttttatatttttagtagggacggggtttcaccatgttggccaagctggtctcgaacttctgacctcaagtgatcacc--------------------------ctggcctcggcctcccaaagtgttgggattacaggcgtgagctaccatgcctggcctagtatTTCTTGAAGAGAACAATTTCCTGGTTATGGCTGAGGAATCAGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31599612 402 -  90373283 TTCTTGATAGGAAGAGCCAAATAATCTAGGTCAATAACTTGATGTCCAGtttttat---tgttgt-tgtttttgggacggagtctcgctctgtcgcccaggctggaatgcagtggcacgatcttggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcaacctcccaagtagctgggactataggcacctgccaccatg-ccttgctaatttttatatttttagtagggatgaggtttcaccatgttggccaggctggtctcaaacttctgacctcaagtgatcacc--------------------------ccggccttggcctcccaaagtgttgggattacaggcatgagctaccatgcctggccTAGTATTTCTTGAAGAGAACAATTTCCTGATTATGGCTGAGGAATCAGAA
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28022790 749 +  39895921 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=291312.000000
s hg38.chr21_GL383581v2_alt      2544 148 +    116689 AATGCCTTTTTATTT---CTCATCTGCAAGGTGATGGAGGTGGGATCAATGATGTTCACCTAATTGACTTTCATCATAATGTCCCCG----CCCCCA--ATAGAAAGATCCTAAAGGGTCAGTCCTTAATTATCAAGATTAAATGATTAATGTTAAT------
s panTro4.chr21              19506336 148 +  32799110 AATGCCTTTTTATTT---CTCATCTGCAAGGTGATGGAGGTGGGATCAATGATGTTCACCTAATTGACTTTCATCATAATGTCCCCG----CCCCCA--ATAGAAAGATCCTAAAGGGTCAGTCCTTAATTATCAAGattaaatgattaatgttaat------
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19932689 154 +  32716333 AATGCTTTTTTACTT---CTCATCTGCAAGGTGATGGAGGTGGGATCAATGATGTTCACCTGATTGATTTTCATCATAATGTCCCCTACCCCCCCCACCACAGAAAGATCCTAAAGGGTCAGTCCTTAATTGTCAAGATTAAATGATTAATGTTAAT------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185101528 144 - 198365852 AATGCTTTTTTACTT---CTCATCTGTAAGGTGATGGAGGTGGGATCAATGATGTTCACCTAATTGATTTTCATCATAATGTACCCC----CC------ATAGAAAGATCCTAAAGGGTCAGTCCTTAATTGTCAAGattaaatgattaatgttaat------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178942576 144 - 192294377 AATGCTTTTTTACTT---CTCATCTGTAAGGTGATGGAGGTGGGATCAATGATGTTCACCTAATTGATTTTCATCATAATGTACCCC----CC------ATAGAAAGATCCTAAAGGGTCAGTCCTTAATTGTCAAGATTAAATGATTAATGttaat------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167322596 144 - 180432695 AATGCTTTTTTACTT---CTCATCTGCAAGGTGATGGAGGTGGGATCAATGATGTTCACCTAATTGATTTTCATCATAATGTACCCC----CC------ACAGAAAGATCCTAAAGGGTCAGTCCTTAATTGTCAAGATTAAATGAttaatgttaat------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600014 144 -  90373283 AATGCTTTTTTACTT---CTCATCTGCAAGGTGATGGAGGTGGGATCAATGATGTTCACCTAATTGATTTTCATCATAATGCACCGC----CC------ATAGAAAGATCCTAAAGGGTCAGTCCTTAATTGTCAAGATTAAATGATTAATGTTAAT------
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28023539 127 +  39895921 AATGTTTTTTGGCTTCTCCTCACCCACAAGGTGTTGGAGGTAAGAT----------------------GTTCATTATAACGCCCCAT----CC------ATAGAAAGATCCTAAAGG----GTCTTTGCATGTCAAGATTAAATGGTTGATTTTAATGTTAAC
i canFam3.chr31             I 749 I 184
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=59937.000000
s hg38.chr21_GL383581v2_alt      2692 27 +    116689 TATATTTTATTTTATTATCTGTGTGTG
s panTro4.chr21              19506484 27 +  32799110 tatattttattttattatCTGTGTGTG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19932843 22 +  32716333 TA-----TATTTTATTATCTGTGTGTG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185101672 27 - 198365852 tatattttattttattatCTGTGTGTG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178942720 27 - 192294377 tatattttattttattatctttGTGTG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167322740 27 - 180432695 tatattttattttattatctgtgtGTG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600158 27 -  90373283 TATATTTTATTTTATTATCTGTGTGTG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28023850 27 +  39895921 TGTACTTTATTTTATTATCTGTGTGTG
i canFam3.chr31             I 184 I 186
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=82199.000000
s hg38.chr21_GL383581v2_alt      2719 39 +    116689 ATAAGTGTTAATCAAACTATGCTGTTAAGACCCAGGATA
s panTro4.chr21              19506511 39 +  32799110 ATAAGTGTTAATCAAACTATGCTGTTAAGACCCAGGATA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19932865 39 +  32716333 ATATGTGTTAATCAAACTATGCTGTTAAGACCCAGGATA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185101699 39 - 198365852 GTTTATGTTAATCAAACTATGCTGTTAAGACCCAGGATA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178942747 39 - 192294377 GTTTATGTTAATCAAACTATGCTGTTAAGACCCAGGATA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167322767 39 - 180432695 GTTTATGTTAATCAAACTATGCTGTTAAGACCCAGGATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600185 39 -  90373283 ATTTATGTTAATCAAACTATGCTGTTAAGACCCAGGATA
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28024063 39 +  39895921 ATGTATGTTAACCAAAGAATCCTTTTGAGACCCAAGAAA
i canFam3.chr31             I 186 I 1
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=529554.000000
s hg38.chr21_GL383581v2_alt      2758 312 +    116689 TCCTCCTAttctt----tttgtttgtttgtttgatatggagttttgctcttgttgccca-gctggagtgcagtggcatggtcttgactcactgcaacct-ccacctcccgggttcaagtgattctcctgcctcagcctcccaagtaactgtgattacag-tatgcaccaccgcacctggctaatttttgtatttttagtagagacagggtttcaccacgttggtcaggctggtctcgaactcctgaccttaagtgatctgcctgcctcaacctcccaaagtgctgggattacaggcatgagccaccgcacccagccCCT
s panTro4.chr21              19506550 313 +  32799110 TCCTCCTAttctt----tttgtttgtttgtttgatacggagttttgctcttgttgccca-gctggagtgcagtggcatggtcttgactcactgcaacctcccgcctcccgggttcaagtgattctcctgcctcagcctcccaagtaactgtgattacag-tatgcaccaccgcacccggctaatttttgtatttttagtagagacagggtttcaccacgttggtcaggctggtctcgaactcctgacctcaagtgatccgcctgcctcaacctcccaaagtgctgagattacaggcatgagccactgtacccagtcCCT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19932904 315 +  32716333 TCCTCCTAttcttttcgtttgtttgtttgtttgatatggagttttgctcttgttgcccaggctggagtgcaatggcacggtctcgactcactgcaacct-ccacctcccaggttcaagtgattctcctgcctcaacctcccaagtaactgtgattacagttgtgcaccaccacacccggctaatttttgtatttttaatagagacggggtttcaccatgt---gcaggctggtcttgcactcctgacctcaagtgatctgcctgtctcaacctcccaaagtgctgggattacaggcatgagccaccacacccagccCCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185101738 312 - 198365852 TCCTCCTAttttt----tttgtttgttt-tttgatatggagttttgctcttgttgcctaggctggagtgcagtggcatggtctcagctcactgcaacct-ccgcctcccacgttcaagcgattctcctacctcggtctcccaagtcaccgtgattacagttgtgcgccaccacacccagctaatttttgtatttttagtggagtc-gggtttcaccacgttggtcaggctgctctcgaactcctgacctcgagtgatccgcctgcctcgacctcccaaaatgctgcgattacaggcatgagctaccgcacccagccCCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178942786 312 - 192294377 TCCTCCTA-tttt----tttgtttgttt-tttgatatggagttttgctcttgttgcctaggctggagtgcaatggcatggtctcggctcactgcaacct-ccgcctcccaggttcaagtgattctcctacctcagtctcccaagtcaccgtgattacagttgtgcgccaccacacccagctaatttttgtatttttagtggagtcggggtttcaccacgttggtcaggctggtctcgaactcctgacctcgagtgatccacctgcttcaacctcccaaaatgctgggattacaggcatgagctaccgcacccagccCCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167322806 316 - 180432695 TCctcctattttt-ttgtttgtttgttt-tttgatatggagttttgctcttgttgcctaggctggagtgcaatggcatggtctcggctcactgcaacct-ccgcctcccaggttcaagcgattctcctacctcagtctcccaagtcaccgtgattacagttgtgcaccaccacacccagctaatttttgtatttttagtggagtcggggtttcaccacgttggtcaggctggtctcgaactcctgaccttgagtgatccacctgcctcaacctcccaaaatgctgggattacaggcatgagctaccgcacccagcccct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600224 309 -  90373283 TCCCCCTAttttt--------tttgttt-tttgatacggagttttgctcttgttgcctaggctggagtgcaatggcacggtcttggctcactgcaacct-ccgcctcccaggttcaagcgattctcctacctcagtctcccaagtcgccgtgattacagttgtgcgccaccacacccagctaatttttgtatttttagtggagtcggggtttcaccacgttggtcaggctggtctcgaactcctgacctcgagtgatccacctgcctcaacctcccaaaatgctgggattacaggcatgagctaccgcacccagccCCT
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28024102   1 +  39895921 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=183408.000000
s hg38.chr21_GL383581v2_alt      3070 84 +    116689 CCTATTCCTAAATATGCATAAAGTCTGAAATGCCTGGATCTGGGATAGGTAGATCAAAGGTGTTGGGATGGGTCAGGAAGGCAG
s panTro4.chr21              19506863 84 +  32799110 CCTATTCCTAAATATGCATAAAGTCTGAAATGCCTGGATCTGGGATAGGTAGATCAAAGGTGTTGGGATGGGTCAGGAAGGCAG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933219 84 +  32716333 CCTATTCCTAAATATGCATAAAGTCTGAAATGCCTGGATCTGGGATAGATAGATCAAAGGTGGTGGGATGGGTCAGGAAGGCAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102050 84 - 198365852 CCTATTCTTAAATATGCATCATGTCTGAAATGCCTGGATCTTAGATAGATAGATCAAAGGTGGTGGGATGGGTCAAGAAGGCAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943098 84 - 192294377 CCTATTCTTAAATATGCATAATGTCTGAAATGCCTGGATCTTAGATAGATAGATCAAAGGTGGTGGGATGGGTCAAGAAGGCAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323122 84 - 180432695 cctATTCTTAAATATGCATGATGTCTGAAATGCCTGGATCTTAGATAGATAGATCAAAGGTGGTGGGATGGGTCAAGAAGGCAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600533 84 -  90373283 CCTATTCTTAAATATGCATAATGTCTGAAATGCCTGGATCTTGGATAGATAGATCAAAGGTGGTGGGATGGGTCAGGAAGGCAG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28024103 80 +  39895921 CCTATTCTTAAATATGACTTAAGTCTTAAATGCCTGGATCCAG----GGTAGATCAGAGGTGATGGGCGGGGACAGGAAGGTGG
i canFam3.chr31             I 1 I 60068
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=2796.000000
s hg38.chr21_GL383581v2_alt      3154 2 +    116689 AG-
s panTro4.chr21              19506947 3 +  32799110 AGT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933303 3 +  32716333 AGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102134 3 - 198365852 AGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943182 3 - 192294377 AGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323206 3 - 180432695 AGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600617 3 -  90373283 AGT
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28024183 60068 +  39895921 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=236650.000000
s hg38.chr21_GL383581v2_alt      3156 108 +    116689 TTGTTCATTCACCTCTTCACTGGTTGTTAAATGGTCCTAGTGTTTGGCCCTGAGTGTATAAAAATGATTAAGACAATGAATGTAGAGAATAGTCTACTTAGAGACCTT
s panTro4.chr21              19506950 108 +  32799110 TTGTTCATTCACCTCTTCACCAGTTGTTAAATGGTCCTAGTGTTTGGCCCTGAGTGTATAAAAATGATTAAGACAATGAATGTAGAGAATAGTCTACTTAGAGACCTT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933306 108 +  32716333 TTGTTCATTCACCTCTTCACTGGTTGTTAAATGGTCCTAGTGTTTGGCCCTGAGTGTACAAAAATGATTAAGACAATCAATGTAGAGAATAGTTTACTTAGAGACATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102137 108 - 198365852 TTGTTCATTCACCTCTTTACTCGTTGTTAAATGGTCCTACTGTTTAGCCCTGAGTGTATAAAAATGATTAAGACAGTCAATGTAGAGAATAGTCTACTTAGAGACATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943185 108 - 192294377 TTGTTCATTCACCTCTTTACTCGTTGTTAAATGGTCCTACTGTTTAGCCCTGAGTGTATAAAAATGATTAAGACAGTCAATGTAGAGAATAGTCTACTTAGAGACATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323209 108 - 180432695 TTGTTCATTCACCTCTTTACTTGTTGTTAAATGGTCCTACTGTTTAGCCCTGAGtgtataaaaatgattaagacaGTCAATGTAGAGAATAGTCTACTTAGAGACATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600620 108 -  90373283 TTGTTCATTCGCCTCTTTACTCATTGTTAAATGGTCCTACTGTTTAGCCCTGAGTGTATAAAAATGATTAAGACAGTCAATGTAGAGAATAGTCTACTTAGAGACATT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28084251 108 +  39895921 TTGTCCTGCCATCTCTCCACTAGTTGTTAAATGCTACTACTGTTGGGCACTGAATATATAAAAACAACTAAGGCAATCAATGTAGAAAGCAGTCTAGTTAGGAACACT
i canFam3.chr31             I 60068 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=7140.000000
s hg38.chr21_GL383581v2_alt      3264 5 +    116689 GTCAG
s nomLeu3.chr25              19933414 5 +  32716333 GTCAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102245 5 - 198365852 GCCAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943293 5 - 192294377 GCCAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323317 5 - 180432695 ACCAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600728 5 -  90373283 GCCAG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28084359 5 +  39895921 GTTAg
i canFam3.chr31             C 0 I 412
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e panTro4.chr21              19507058 0 +  32799110 C

a score=18978.000000
s hg38.chr21_GL383581v2_alt      3269 15 +    116689 AATGTCTGTATTACC
s nomLeu3.chr25              19933419 15 +  32716333 AATGTCTGTATTACC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102250 15 - 198365852 AATGTCTGTATTATC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943298 15 - 192294377 AATGTCTGTATTATC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323322 15 - 180432695 AATGTCTGTATTATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600733 15 -  90373283 AATGTCTGTATTATC
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28084364 412 +  39895921 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e panTro4.chr21              19507058  0 +  32799110 C

a score=223958.000000
s hg38.chr21_GL383581v2_alt      3284 151 +    116689 ATGTGTACTATAATAGATACACATACACTATGTGCCATGATTTTTCAAAAGTGCTAGAATA---GAAATATTTTTAAATGTTATAGGACACTACTTGCCAGGAAGAGTTGAAGAAAGTCCAATAGAGGAAGAACAAACTGAGCTGGGTTTTGAA
s nomLeu3.chr25              19933434 151 +  32716333 ATATGTACTATAATAGATACACATACACTATATGCCATGATTTTTCAAAAGTACTAGAATA---GAAATATTTTTAAATGTTACAGGACACTACTTGCCAGGAAGAGTTGAAGAAAGTCCAATAGAGGAAGAACAAACTGAGCTGGATTTTGAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102265 151 - 198365852 ATACATACTATAATAGATACACATGTACTGTATGCCATGATTTTTCAAAAGTACTAGAATA---GAAATATTTTTAAATGTTGTAGGACACTATTTGTCAGGAAGAGTTGAGGAAAGTCCAATAGAGGAAGAACAAACTGAGCTGGGTTTTGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943313 151 - 192294377 ATACATACTATAATAGATACACATGTACTGTATGCCATGATTTTTCAAAAGTACTAGAATA---GAAATATTTTTAAATGTTATAGGACACTATTTGTCAGGAAGAGTTGAGGAAAGTCCAATAGAGGAAGAACAAACTGAGCTGGGTTTTGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323337 151 - 180432695 ATACATACTATAATAGATACACATGTACTGTATGCCATGATTTTTCAAAAGTACtagaata---gaaatatttttaaatgttataggACACTACTTGTCAGGAAGAGTTGAGGAAAGTCCAATAGAGGAAGAACAAACTGAGCTGGGTTTTGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600748 151 -  90373283 ATATGTACTATAATAGATACACATATACTGTATGCCATGATTTTTCAAAAGTACTAGAACA---GAAATATTTTTAAATGTTATaggacactacttgtcaggaagagttgaggaaagtccaatagaggaagaacaaactgagctgggttttgaa
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28084776 127 +  39895921 ATATGGGCTATA----ATACACAAACATTATGAGCTGTAG---CGCAAAAGTGTTGCACTATATGAAA-----TCAAGTGTTATAGGACAGTACTTGCCAGGAAGAACT---------------GAGGAAGAGCAAACTTGGTGGGGTTTTGAA
i canFam3.chr31             I 412 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e panTro4.chr21              19507058   0 +  32799110 C

a score=69327.000000
s hg38.chr21_GL383581v2_alt      3435 33 +    116689 GCATG-----GAGTTT--CAGATTAAAGAAAAGAAGAAAA
s panTro4.chr21              19507058 33 +  32799110 GCATG-----GAGTTT--CAGATTAAAGAAAAGAAGAAAA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933585 33 +  32716333 GCATG-----GAATTT--CAGATTAAAGAAAAGAAGAAAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102416 33 - 198365852 GCATG-----GAGTTT--CAGATTAAAGAAAAGAGGAAAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943464 33 - 192294377 GCATG-----GAGTTT--CAGATTAAAGAAAAGAGGAAAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323488 33 - 180432695 GCATG-----GAGTTT--CAGattgaagaaaagaggaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600899 33 -  90373283 gcatg-----gagttt--cagattaaagaaaagaggaaaa
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28084903 40 +  39895921 GCATGAATAAGAGTTTGGCAGATAAAAAAGAAGGAATAAA
i canFam3.chr31             C 0 T 59014
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=359032.000000
s hg38.chr21_GL383581v2_alt      3468 205 +    116689 ggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcactaggtcaggagttcgagaccagcctggccaagatggtgaaacgctgtctctactaaaaatac-aaaaattagctgggcacagtggcgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaaccc
s panTro4.chr21              19507091 205 +  32799110 ggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcactaggtcaggagttcgagaccagcctggccaagatggtgaaacgctgtctctactaaaaatac-aaaaattagctgggcacagtggtgggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaaccc
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933618 206 +  32716333 ggccaggtgtggtggctcacacctgtaatcccagcactttgggagaccaaggcaggcagatcacgaggtcaggagattgagatcatcctggctaatatggtgaaacctcgtctctactaaaaacacaaaaaattagctgggcgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcatgggaatcgcttgaacct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185102449 205 - 198365852 ggccaggcgtggtggctcatacctgtaatcccagtactttgggaggccgaggcaggtggatcacaaggtcaggagttcgagaccagcctggccaagatggtgaaaccctgtctctactaaaaatac-aaaaattaactgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943497 205 - 192294377 ggccaggcgtggtggctcatacctgtaatcccagtactttgggaggccgaggcaggtggatcacaaggtcaggagttcgagaccagcctggccaagatggtgaaaccctgtctctactaaaaatac-aaaaattaactgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323521 205 - 180432695 ggccaggcgtggtggctcatacctgtaatcccagtactttgggaggctgaggcaggtggatcacaaggtcaggagttcgagaccagcctggccaagatggtgaaaccctgtctctactaaaaatac-aaaaattaactgggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31600932 196 -  90373283 ggccaggtgtggtggctcatacctgtaatcccagtactttgggaggccgaggcaggtggatcacgaggtcaggagtt---------cctggccaagatggtgaaaccctgtctctactaaaaatac-aaaaattaactgggcgtggtggcgggtgcctgtaatcccagcactttgggaggccgaggcaggggaatctcttgaaccc
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=46796.000000
s hg38.chr21_GL383581v2_alt      3673 40 +    116689 aggaagtggaggttacagtgagcctagatcgtgccactac
s panTro4.chr21              19507296 40 +  32799110 aggaagtggaggttacagtgagcctagatcgtgccactac
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933824 40 +  32716333 gggaggtggaggttgcagtaagccgagatcgtgccactgc
i nomLeu3.chr25             C 0 I 112
s rheMac3.chr3              185102654 40 - 198365852 aggaggtggaggttactgtgagccgagatcgcgccacagc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943702 40 - 192294377 aggaggtggaggttactgtgagccgagatcgcgccacagc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323726 40 - 180432695 aggaggtggaggttactgtgagccaagatcgcgccacagc
i papAnu2.chr3              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e chlSab2.chr2               31601128  0 -  90373283 C

a score=32782.000000
s hg38.chr21_GL383581v2_alt      3713 43 +    116689 actctagcctgggtgacagaacaaga--ctgtctcaaaaaaaaaa
s panTro4.chr21              19507336 43 +  32799110 actctagcctgggttacagaacaaga--ctgtctcaaaaaaaaaa
i panTro4.chr21             C 0 I 2
s rheMac3.chr3              185102694 45 - 198365852 actctaacgtgggtgaccgagcaagacgctatctcaaaaaaaaaa
i rheMac3.chr3              C 0 I 51
s macFas5.chr3              178943742 45 - 192294377 actctaacctgggtgaccgagcaagacgctatctcaaaaaaaaaa
i macFas5.chr3              C 0 I 28
s papAnu2.chr3              167323766 45 - 180432695 actctaacctgggtgaccgagcaagactctatctcaaaaaaaaaa
i papAnu2.chr3              C 0 I 22
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e chlSab2.chr2               31601128  0 -  90373283 C
e nomLeu3.chr25              19933864 112 +  32716333 I

a score=24476.000000
s hg38.chr21_GL383581v2_alt      3756 51 +    116689 GAggccgggctcagtggctcacacctgtaatcccagcactgtgggaggcca
s panTro4.chr21              19507381 51 +  32799110 GAggccgggctcagtggctcacacctgtaatcccagcactgtgggaggcca
i panTro4.chr21             I 2 C 0
s macFas5.chr3              178943815 51 - 192294377 GAGgctgggtgcagttgctcatgtctgtaatcccagcactttgggaggcca
i macFas5.chr3              I 28 C 0
s papAnu2.chr3              167323833 51 - 180432695 gaggctgggtgcagttgctcatgtctgtaatcccagcactttgggaggcca
i papAnu2.chr3              I 22 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185102739 51 - 198365852 I
e calJac3.chr21              37402790 3045 +  50472720 M
e chlSab2.chr2               31601128  0 -  90373283 C
e nomLeu3.chr25              19933864 112 +  32716333 I

a score=9530.000000
s hg38.chr21_GL383581v2_alt      3807 108 +    116689 aggcaggcagatcaggaggtcaggagatcaagaccatcctggctaataatggtgaaacctcgtctctcctaaaagcacaaaaaaatagccaggcgtggtagcaggtgc
s panTro4.chr21              19507432 108 +  32799110 aggcaggcagatcacgaggtcaggagatcaagaccatcctggctaataatggtgaaacctcgtctctactaaaaacacaaaaaattagccaggcgtggtagcaggtgc
i panTro4.chr21             C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185102739  51 - 198365852 I
e calJac3.chr21              37402790 3045 +  50472720 M
e chlSab2.chr2               31601128   0 -  90373283 C
e papAnu2.chr3              167323884   0 - 180432695 C
e macFas5.chr3              178943866   0 - 192294377 C
e nomLeu3.chr25              19933864 112 +  32716333 I

a score=5935.000000
s hg38.chr21_GL383581v2_alt      3915 27 +    116689 ctgtaatcccagctactcgggaggctg
s panTro4.chr21              19507540 27 +  32799110 ctgtaatcccagctactcgggaggctg
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185102790 27 - 198365852 ctgtaatcccagcactttgggaggcca
i rheMac3.chr3              I 51 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e chlSab2.chr2               31601128  0 -  90373283 C
e papAnu2.chr3              167323884  0 - 180432695 C
e macFas5.chr3              178943866  0 - 192294377 C
e nomLeu3.chr25              19933864 112 +  32716333 I

a score=17186.000000
s hg38.chr21_GL383581v2_alt      3942 23 +    116689 aggcaggagaattgcttgaacct
s panTro4.chr21              19507567 23 +  32799110 aggcatgggaattgcttgaacct
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185102817 23 - 198365852 aggcaggggaacctcttgaaccc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943866 23 - 192294377 aggcaggggaacctcttgaaccc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323884 23 - 180432695 aggcaggggaatctcttgaaccc
i papAnu2.chr3              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e chlSab2.chr2               31601128  0 -  90373283 C
e nomLeu3.chr25              19933864 112 +  32716333 I

a score=73280.000000
s hg38.chr21_GL383581v2_alt      3965 57 +    116689 gggaggtggaggttgcagtaagccgagatcacgccactgcgacactgcactccagcc
s panTro4.chr21              19507590 57 +  32799110 gggaggtggaggttgcagtaagccgagatcacgccactgcgacactgcactccagcc
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185102840 57 - 198365852 gggaggctgaggttgtagtgagccgagatggcgccactgcaacactgcactccagcc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943889 57 - 192294377 gggaggctgaggttgtagtgagccgagatgatgccactgcaacactgcactccagcc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323907 57 - 180432695 gggaggctgaggttgcagtaagccgagatgacgccactgcaacactgcactccagcc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31601128 57 -  90373283 gggaggctgaggttgcagtgagccgagatgatgccactgcaacactgcactccagcc
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M
e nomLeu3.chr25              19933864 112 +  32716333 I

a score=638176.000000
s hg38.chr21_GL383581v2_alt      4022 365 +    116689 tgggggacagagtgag-actctgtctcaaaagaaaaaaagaaaaaG-----CAATATGC-AAAATTATGTAGGTCCAAAATAAAATAGGATAGAG-TTTATGGTATTTTAGCGAGTGGTGGTGATTGGTC----TGGGATAAGATCTTGAAGGATTTTCAGCTTACTCAAGTCTGAACTCTACCCTCCATGCcaggaatcggcaaagtttttctgtaaagaactagacagtaTGCACTCAGATGGTTACAGAAGTTTGATTAAATGGCTGATTTCTGAATTAGGTATGGCGCTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTGTCGTTATTTTTTCCTCTTGCTCTCACACATGT
s panTro4.chr21              19507647 365 +  32799110 tgggggacagagtgag-actctgtctcaaaagaaaaaaagaaaaaG-----CAATATGC-AAAATTATGTAGGTCCAAAATAAAATAGGATAGAG-TTTATGGTATTTTAGCGAGTGGTGGTGATTGGTC----TGGGATAAGATCTTGAAGGATTTTCAGCTTACTCAAGTCTGAACTCTACCCTCTATGCcaggaatcggcaaagtttttctgtaaagaactagacagtaTGCACTCAGATGGTTACAGAAGTTTGATTAAATGGCTGATTTCTGAATTAGGTATGGCGCTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTGTCGTTATTTTTTCCTCTTGCTCTCGCACATGT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19933976 369 +  32716333 TGGGGGACAGAGTGAGAACTCTGTCTCAAAAGAAAAAAAGAAGAAG----AAAATATGCAAAAATTATGTAGGTCCAAAATAAAATAGGATAGAGTTTTATGGTATTTTAGGGAGTGGTGGTGATTGGTC----TGGGATAAGATCTTGAAGGATTTTCAGCTTACTCAAGTCTGAACTCTACCCTCTATGCCAGGAATTGGCAAGGTTTTTCTGTAAAGAACTAGACAGTATGCACTCAGATGGTTACGGAAGCTTGATTAAATGGCTGATTTCTGAATTAGGTATGGCGTTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTGTCATTATTTTTTCCTCTTGCCCTCGCACATGT
i nomLeu3.chr25             I 112 I 160
s rheMac3.chr3              185102897 373 - 198365852 tgggggacagagcgag-actccatctcaaaagaaaaaaagaagaagaaataaaaTATGC-AAAATTATATAGGTCCAAAATAAAATAGGAGAGAG-TGTATGGTATTTTAGGGAGTGGTGATGATTAGTCTGTTTGAGATAAGATCTTGAAGGATTTTCAACTTACTCAAGTTTGAACTCTACCCTCTATGCCAGGAATTCACAGA-TTTTTCTGTAAAGAACTAGACAGTATGCACTCAGGTGGTTATAGAAGTTGGATTAAATGGCTGATTTCTCAATTAGATATGGCATTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTGTAGTTATTTTTTCCTCTTGCTCTCGCACATGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178943946 373 - 192294377 tgggggacagagcgag-actccatctcaaaagaaaaaaagaagaagaaataaaaTATGC-AAAATTATGTAGGTCCAAAATAAAATAGGAGAGAG-TGTATGGTATTTTAGGGAGTGGTGATGATTAGTCTGTTTGAGATAAGATCTTGAAGGATTTTCAACTTACTCAAGTTTGAACTCTACCCTCTATGCCAGGAATTGACAGA-TTTTTCTGTAAAGAACTAGACAGTATGCACTCAGGTGGTTATAGAAGTTGGATTAAATGGCTGATTTCTCAATTAGATATGGCATTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTGTAGTTATTTTTTCCTCTTGCTCTCGCACATGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167323964 373 - 180432695 tgggggacagagcgag-actccatctcaaaagaaaaaaagaagaagaaataaaatatgc-aaaattatgtaggtccaaaataaaataGGAGAGAG-TGTATGGTATTTTAGGGACTGGTGGTGATTAGTCTGTTTGAGATAAGATCTTGAAGGATTTTCAACTTACTCAAGTCTGAACTCTACCCTTTATGCCAGGAATTGGcaga-tttttctgtaaagaactaGACAGTATGCACTCAGGTGGTTATAGAAGTTGGATTAAATGGCTGATTTCTCAATTAGATATGGCATTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTgtagttattttttcctcttgctcTCGCACATGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31601185 371 -  90373283 tgggggacagagcgag-actccgtctcaaaagaaaaa---aagaagaaataaaaTATGC-AAAACTATGTAGGTCCAAAATAAAATAGGAGAGAG-TGTATGGTATTTTCGGGAGTGGTGATGATTAGTCTGTTTGAGATAAGATCTTGAAGGATTTTCAACTTATTCAAGTCTGAACTCCACCCTCTATGCcaggaattggcagactttttctgtaaagaactagacagtaTGCACTCAGGTGGTTGTAGAAGTTTGATTAAATGGCTGATTTCTCAATTAGATATGGCATTTGAGACTCTGCCTAGGGAGAGTGCTCAGGTCATGCTTATATGTGAAAATGTGTAGTTATTTTTTCCTCTTGCTCTCACACGTGC
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=606260.000000
s hg38.chr21_GL383581v2_alt      4387 338 +    116689 CCCTTGGTTTCCTAAG-TGAGGTTTTGAAAATGAAATTTTGACAGTTGAGCCAAAATGCCCTCTATAAGCACGTGTATTTCCTTCTTTAAAGAATTCCCTCTCAGGAAT--------TCCCTCTCTAATGTATTGTAAGATTTGGGGTTCGACCATTAACGCATTAGTCCAGTTCAATAAGCTTCATTTTTTTTTGTTGGTAGCAGGGTCCATTTTATGGGCGAACATACCAGTAAGTTCCTTGCCTTCGGGGAAGTTTAAGTTTATTAAAAGCAGTTACAGATATATTACAGATGTATTATACAGGAGGTT-CTCAAGAGGCAAGAAGGTTCAGCAAGTTCATTGTC
s panTro4.chr21              19508012 347 +  32799110 CCCTTGGTTTCCTAAGCTGAGGTTTTGAAAATGAAATTTTGACAGTTGAGCCAAAATGCCCTCTATAAGCACGTGTATTTCCTTCTTTAAAGAATTCCCTCTCAGGAATAAGAACAGTTGTTCTCTAATGTATTGTAAGATTTGGGGTTCGACCATTAACGCATTAGTCCAGTTCAATAAGCTTCATTTTTTTT-GTTGGTAGCAGGGTCCATTTTATGGGCGAACATACCAGTAAGTTCCTTGCCTTCGGGGAAGTTTAAGTTTATTAAAAGCAGTTACAGATATATTACAGATGTATTATACAGGAGGTTTCTCAAGAGGCAAGAAGGTTCAGCAAGTTCATTGTC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19934505 347 +  32716333 CCCTTGGTTTCCTAAGCTGAGGTTTTGAAAATGAAATTTTGACAATTGAGCCAAAATGCCTTCTATAAGCACGTGTATTTCCTTCTTTAAAGAATTCCGTCTCAGGAATAAGAACAATTGTTCTCTAATGTATTGTAAGACTTGGGGTTCGACCATTAACGCCTTAGTCCAGTTCAATAAGCTTCATTTTTTTC-GTTGGTAGCAGGGTCCATTTTATGGGAGAACATACCAGTAAGTTCTTTGCCTTCGGGGAAGTTTAAGTTTATTAAAAGCAGTTACAGATATATTATGGATGTATTATACAGGAAGTTTCTCAAGAGGCAAGAAGGTTCAGCAAGTTCATTGTC
i nomLeu3.chr25             I 160 C 0
s rheMac3.chr3              185103270 347 - 198365852 CCCTTGCTTTCCTAAGCTGAGGTTTTGAAAATGAAATTTTCACAGTTGAGTGAAAATGCCCTCTATAAGCACGTGTATTTCCTTCTTTAAAGAATTTCCTCTCAGGAATAAGAAGAATTGTTCTCTACTGTATTGTAAGACTTGGGGTTCGACCATGAACGCATTAGTCCAGTTCAATAAGCTTCATTTTTCTT-GTTGGTAGTAGGGTACATTTTGTGGGAGAACATACCAATAATTTCCTTGCCTTCAGGGAAGTTTAAGCTTATTAAAAGCAGTTACAGATATATTACAGATGTATTATTCAGGAAGTTTCTCAACAGGCAAGAAGGTTCAGCAAGTTCATTGtc
i rheMac3.chr3              C 0 I 3
s macFas5.chr3              178944319 347 - 192294377 CCCTTGCTTTCCTAAGCTGAGGTTTTGAAAATGAAATTTTCACAGTTGAGTGAAAATGCCCTCTATAAGCACGTGTATTTCCTTCTTTAAAGAATTTCCTCTCAGGAATAAGAAGAATTGTTCTCTACTGTATTGTAAGACTTGGGGTTCGACCATGAACGCATTAGTCCAGTTCAATAAGCTTCATTTTTCTT-GTTGGTAGTAGGGTACATTTTGTGGGAGAACATACCAATAATTTCCTTGCCTTCAGGGAAGTTTAAGCTTATTAAAAGCAGTTACAGATATATTACAGATGTATTATTCAGGAAGTTTCTCAACAGGCAAGAAGGTTCAGCAAGTTCATTGTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167324337 347 - 180432695 CCCTTGCTTTCCTAAGCTGaggttttgaaaatgaaattttcacaGTTGAGTGAAAATGCCCTCTATAAGCACGTGTATTTCCTTCTTTAAAGAATTCCCTCTCAGGAATAAGAAGAATTGTTCTCTACTGTATTGTAAGACTTGGGGTTCGACCATGAACGCATTAGTCCAGTTCAATAAGCTTCATTTTTCTC-GTTGGTAGTAGGGTCCATTTTGTGGGAGAACATACCAATAATTTCCTTGCCTTCAGGGAAGTTTAAGCTTATTAAAAGCAGTTACAGATATATTACAGATGTATTATTCAGGAAGTTTCTCAACAGGCAAGAAGGTTCAGCAAGTTCATTGTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31601556 347 -  90373283 CCCTTGCTTTCCTAAGCTGAGGTCTTGAAAATGAAATTTTGACAGTTGAGTGAAAATGCCCTCTATAAGCACCGGTATTTCCTTCTTTAAAGAATTCCCTCTCAGGAATAAGAATAATTGTTGTCTACTGTATTGTAAGACTTGGGGTTCGACCATGAACGCATTAGTCCAGTTCGATAAGCTTCATTATTCTC-GTTGGTAGTAGGGTCCATTTTGTGGGAGAACACACCAATAATTTCCTTGCCTTCAGGGAAGTTTAAGCCTATTGAAAGCAGTTACAGATATATTACAGATGTATTATTCAGGAAGTTTCTCGACAGGCAAGATGGTTCAGCAAGTTCATTGTC
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e calJac3.chr21              37402790 3045 +  50472720 M

a score=108308.000000
s hg38.chr21_GL383581v2_alt      4725 103 +    116689 TTAATTACAATAAtttttttttttttttttt------gagacagagtctctctctgtcacccaagctggagtgcagtggtgcaatctcggctcactgcagcctccacct
s panTro4.chr21              19508359 109 +  32799110 TTAATTACAATAAttttttttttttttttttttttttgagacagagtctctctctgtcacccaagctggagtgcagtggtgcaatctcggctcactgcagcctccacct
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19934852 101 +  32716333 TTAATTACAAt--tttttttttttttttttt------gagacagagtctctctctgtcacccaagctggagtgcagtggtgcaatctcggctcactgcagcctccatct
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178944666  98 - 192294377 TTAATTACAATA---Attttttttttttttt------tagacggag--tctctctgtcacccaagctggagtgcggtggtgtgatctcagctcactgcagcctccacct
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167324684  99 - 180432695 TTaattacaata--tatatatatatattttt------tagacagag--tctctctgtcacccaaggtggagtgcggtggtgtgatctcagctcactgcagcctccacct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31601903  98 -  90373283 TTAATTACAATA-----Attttttttttttt------tagacagagtctctctctgtcacccaagctggagtgcggtggtgtgatctcagctcactgcagccaccacct
i chlSab2.chr2              C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103617   3 - 198365852 I
e calJac3.chr21              37402790 3045 +  50472720 M

a score=479515.000000
s hg38.chr21_GL383581v2_alt      4828 299 +    116689 cccaggttcaagtaaattctctggctcagcctcccaagtagcttgaat---tacaggcacccaccaccatgcctggctaattt-ttatatttttagtaaagatggggtttcaccatcttggccaggctggtcttgaactcctgacctcatgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccactgcggccagccTACAACAAtttt---------ttttttttt-----------gagacagagtctcgctcttgtcgcccaagctggagtgcagtggcgtgatctcagctcattgcaacctcca
s panTro4.chr21              19508468 303 +  32799110 cccaggttcaagtaaattctctggctcagcctcccaagtagcttggat---tacaggcacccaccaccatgcctggctaattt-ttatatttttagtaaagatggggtttcaccatcttggccaggctggtcttgaactcctgacctcatgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccactgcggccagccTACAACAAtttt---------ttttttttt------tttttgagacagagtctcgctct-gtcgcccaagctggagtgcagtggcgtgatctcagctcattgcaacctcca
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19934953 310 +  32716333 cccaggttcaagtaaattctcttcctcagcctcccgagtagcttggat---tacaggcacccaccaccatgcctgcctcccttggggtatttttagtaaagatggggtttcaccatcttggccaggctggtcttgaactcctgacctcatgatccacccacctcggcctcccaaagtgctgagattgcaggtgtgagccactgtggccagccTACAACAACttt---------ttttttttttttttttttttgaaacagagtcttgctct-atcgcccaagctggagtgcagtggtgtgatctcagctcattgcaacctgca
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178944764 308 - 192294377 cccaggttcaagtaaattctctgcctcagcctcccgagtagcttggac---tacaggcacccaccaccatggctggctaattt-ttgtatttttattagagatgggttttcaccatcttggccaggcttgtcttgaactcctgacctcgtgatgcacccacctcggcctctcaaagtgctgagattacaggcgtgagccactgcagctggccTACAACAACATC----------tttttttttttttttttttgagatggagtcttgctct-gtggcccacgctggagtgcagtggtgtgatctcagctcattgcaacctccg
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167324783 309 - 180432695 cccaggttcaagtaaattctctgcctcagcctcccgagtagcttggac---tacaggcacccaccaccatggctggctaattt-ttgtatttttattagagatgggttttcaccatcttggccaggcttgtcttgaactcctgacctcgtgatgcacccacctcggcctctcaaagtgctgagattacaggcgtgagccactgcagctggcctacaacaacatc---------ttttttttttttttttttttgagatggagtcttgctct-gtggcccacgctggagtgcagtggcgtgatctcagctcattgaaacctccg
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31602001 305 -  90373283 cccaggttcaagtaaattctctgcctcagcctcccgagtagcttggac---tacaggcacccaccaccatggctggctaattt-ttgtatttttattagagatggggtttcaccatcttggccaggcttgtcttgaactcctgacctcgtggtgtacccacctcggcctctcaaagtgctgagattacagacatgagccactgcagccggccTACAACAACATC-------------ttttttttttttttttgagaaggagtcttgctct-gtggcccacgctggagtgcagtggcgtgatctcagctcattgcaacctccg
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37405836 320 +  50472720 CCAAggttcaagt-gattctctgcctcagcctcctggatagctcggatatatacaggtgcacgccaccacacctggctaattt-tggtatgtttagtagagatggtgtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccaccagcttcagcctcccaaagtgctgggattacaggcatgggccaccacacccagccTACAATAACAttttttttttttttttttttttttttttttttaaacagagtctcacttt-gtcacccaggctggagtacagtggcacagtcttggctcattgcatcctcta
i calJac3.chr21             M 3045 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103617   3 - 198365852 I

a score=411867.000000
s hg38.chr21_GL383581v2_alt      5127 176 +    116689 c-tgccgggttcaaatgattcttgtgcttcagcctcccaagtagctggaaatgcaggtgtgcaccactatgcctggctaattgttgtatttttagtagagacggggtttcaccatgttggccaggctggtttcaaactcccaaactcaggtgatccgcccacctcagcctccctaag
s panTro4.chr21              19508771 177 +  32799110 cctgccgggttcaaatgattcttgtgcttcagcctcccaagtagctggaaatgcaggtgtgcaccactgtgcctggctaattgttgtatttttagtacagacggggtttcaccatgttggccaggctggtttcaaactcccaaactcaggtgatccgcctacctcagcctccctaag
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19935263 177 +  32716333 cctgctgggttcaaatgattcttgtgcttcagcttcccaagtagctggaattgcaggtgtgcaccactatgcctggctaattgttgtatttttagtaaagacggggtttcgccatgttggccaggctggtctcaaactcccgaactcaggtgatccacccacctcggcctcccaaag
i nomLeu3.chr25             C 0 I 305
s rheMac3.chr3              185103620 176 - 198365852 -ctgccggtttcaaatgattcttgtgcttcagcctcccaagtagctggaattgcagatgtgcaccaccatgcctggctaattgttgtatttttagtagagacggggttttgccatgttggccaggctggtctcgaactcccgaactcaggtaatctgcctgcctcagcctcccaaag
i rheMac3.chr3              I 3 C 0
s macFas5.chr3              178945073 176 - 192294377 -ctgccggtttcaaatgattcttgtgcttcagcctcccaagtagctggaattgcagatgtgcaccaccatgcctggctaattgttgtatttttagtagagacggggttttgccatgttggccaggctggtctcgaactcccgaactcaggtaatctgcctgcctcagcctcccaaag
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167325093 176 - 180432695 -ctgccggtttcaaatgattcttgtgcttcagcctcccaagtagctggaattgcagatgtgcaccaccatgcctggctaattgttgtatttttagtagagacggggttttgccatgttggccaggctggtctcgaactcctgaactcaggtgatctgcctgcctcagcctcccaaag
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31602307 173 -  90373283 -ctgccggtttcaaatgattcttgtgcttcagccccccaagtagctggaattgcaggtgtgcaccaccatgcctggctaattgttgtatttttagtagagacggggttttgccatgt---ccaggctggtctcaaactcccgaactcaggtgatctgcccgcctcagcctcccaaag
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37406156 177 +  50472720 cctgccaggttcaagttattcttgtgcttcagcctcccaagtagctggaattgcaagtgtgcaccaccatgcctggctaattgttatatttttagtaaaaacagggcttcaccgtgttggccaggctagtctcgaactcccaacctcaggtgatcctcctgcctcagcctcccaaag
i calJac3.chr21             C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M

a score=298766.000000
s hg38.chr21_GL383581v2_alt      5303 136 +    116689 tgctgggattacaggcgtgagccaccacgcccATCCAATTAGAATAACTTTTTACATGTTGTATTTTTAAAATTCATAACTCATAATCTAAAATTTATGCTCAGCACAGCTAACTTTGGAGACCTAC-CAAGAATGG
s panTro4.chr21              19508948 136 +  32799110 tgctgggattacaggcgtgagccactgcgcccATCCAATTAGAATAACTTTTTACATGTTGTATTTTTAAAATTCATAACTCATAATCTAAAATTTATGCTCAGCACAGCTAACTTTGGAGACCTAC-CAAGAATGG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19935745 120 +  32716333 tgctgggattacaggcatgagccaccgcacccggcc----------------TACATGTTGTATTTTTAAAATTCATAACTCATAATCTAAAATTTATGCTTAGCACAGCTAACTTTGGAGACATAC-CAAGAATGG
i nomLeu3.chr25             I 305 C 0
s rheMac3.chr3              185103796 136 - 198365852 tgccaggattacaggcatgagctaccatgcccATCCAATTAGAGTAACTTTTTACATGTTGTATTTTTAAAACTCATAACTTATAATCTAAAATTTATGCTCAGCACAGCTAACTTTGGAGACATAC-CAAGAATGG
i rheMac3.chr3              C 0 I 25
s macFas5.chr3              178945249 136 - 192294377 tgccaggattacaggcatgagctaccatgcccATCCAATTAGAGTAACTTTTTACATGTTGTATTTTTAAAACTCATAACTTATAATCTAAAATTTATGCTCAGCACAGCTAACTTTGGAGACATAC-CAAGAATGG
i macFas5.chr3              C 0 I 2
s papAnu2.chr3              167325269 136 - 180432695 tgccaggattacaggcatgagctaccatgcccatcCAATTAGAGTAACTTTTtacatgttgtatttttaaaactcataacTTATAATCTAAAATTTATGCTCAGCACAGCTAACTTTGGAGACATAC-CAAGAATAG
i papAnu2.chr3              C 0 I 2
s chlSab2.chr2               31602480 135 -  90373283 tgccaggattacaggcatgagctaccatg-ccATCCAATTAGAGTAACTTTTTACATGTTGTATTTTTAAAACTCATAACTTATAATCTAAAATTTATGCTCAGCACAGCTAACTTTGGAGACATAC-CAAGAATGG
i chlSab2.chr2              C 0 I 25
s calJac3.chr21              37406333 136 +  50472720 tgctgggattacaggtgtgagccaccatg-ccGTCCAATTACAATAACTTTTTACATGTTATATTTTTAAAATTCATAACTTATAATCTAAAATTGATGCTTAGCACAGCAAACTTTGGTGACATACACAAGAATGG
i calJac3.chr21             C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M

a score=49081.000000
s hg38.chr21_GL383581v2_alt      5439 100 +    116689 TGCAATGATTCAGCAGCTACTCATGGTAAGACAAGAGTATCTGGGTGTAACCTGTATGAAACCTGCATCTCACAACCACTGCTCCTTCTCCCCAGCCTTC
s panTro4.chr21              19509084 100 +  32799110 TGCAATGATTCAGCAGCTACTCATGGTAAGACAAGAGTATCTAGGTGTAACCTGTATGAAACCTGCATCTCACAACCACTGCTCCTTCTCCCCAGCCTTC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19935865 100 +  32716333 CGCAATGATTCAGCAGCTATTCATGGTAAGACGAGAGCAGCTAGGTGTAACCTGTATGAAACCTGCATCTCACAACCGCAGCTCCTTCTCCCCAGCCTTC
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37406469 100 +  50472720 TGCAAAGATTCAGCAGCTATTCATGGTAAGACAAGAGCAGCGAGGTGTAACCTGTATGAAACCTGCATCTCACAACCACGGTGCTCTCTCTCTAGCCTTC
i calJac3.chr21             C 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103932  25 - 198365852 I
e chlSab2.chr2               31602615  25 -  90373283 I
e papAnu2.chr3              167325405   2 - 180432695 I
e macFas5.chr3              178945385   2 - 192294377 I

a score=1422.000000
s hg38.chr21_GL383581v2_alt      5539 2 +    116689 CA
s panTro4.chr21              19509184 2 +  32799110 CA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19935965 2 +  32716333 CA
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37406569 2 +  50472720 CA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91552268 2 +  98207768 CG
i mm10.chr16                N 0 C 0
e canFam3.chr31              28084943 59014 +  39895921 T
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103932 25 - 198365852 I
e chlSab2.chr2               31602615 25 -  90373283 I
e papAnu2.chr3              167325405 2 - 180432695 I
e macFas5.chr3              178945385 2 - 192294377 I

a score=109130.000000
s hg38.chr21_GL383581v2_alt      5541 179 +    116689 GCCCTGGTGTTTCCCATCGGGGGCCATGTGGCCTGGAACACAGAGGCT------------GGGCTGCCCAAGGA-------CAGGCCCCCTGGCC--TACAAAAAGGACAGTCTTA----------TCACAGATGTGCAATCCTTGGCACTTCCCTGTGGCGTCTGCAGTTCTGAGACTGATTTTCTTCTATAAATGTGAAAAGATAGGG
s panTro4.chr21              19509186 179 +  32799110 GCCCTGGTGTTTCCCATCGGGGGCCATGTGGCCTGGAACACAGAGGCT------------GGGCTGCCCAAGGA-------CAGGCCCCCTGACC--TGCAAAAAGGACAGTCTTA----------TCACAGATGTGCAATCCTTGGCACTTCCCTGTGGCGTCTGCAGTTCTGAGACTGATTTTCTTCTATAAATGTGAAAAGATAGGG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19935967 186 +  32716333 GCCCTGGTGTTTCCCATCGGAGGCCATGTGGCCTGGAACACAGAGGCT------------GGGCTGCCCAAGGACAGGCCCCAGGCCCCCTGACC--TGCAAAAAGGACAGTCTTA----------TCACAGATGTGCAATCCTTGGCACTTCCCTGTGGCGTCTGCAGTTCTGAGACTGATTTTCTTCTATAAATGTGAAAAGATAGGG
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37406571 179 +  50472720 TCCCTGGTGATTCCCACTGGGGGCCATGTGGCCTGGAACACAGAGGCT------------AGGCTGCCCAAGCA-------CAGGTCCCCTGACC--TGCATAAAGGACGGTCTTA----------TCACAGATGCACAATTTTTGGTGCTTACCTATGGCATTTGCAATTCTGAGATGGATTTTCTTTTATTAATGTTTAAAGAGAGGG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91552270 147 +  98207768 GCTGTGCTGTTTCCCA------------------GGAGCAGAGAGGGT------------GAGGTTCC--AGGA-------CGGGCCATCC-------------AGAAGTGCTTTA----------TGGTGTGCGGACAGTCTCTGGCACTTCCC-GAGGAGTCCACAGTTCTGAGACTCATTTTCTTCAGTGAAGAAGATTAGATAAGG
i mm10.chr16                C 0 I 838
s canFam3.chr31              28025929 183 +  39895921 gccctgg-gTTTCCCA------------------GGAACGAGGAGGGCCCCTTGGGGGTGAGGCAGCTCAAGGA-------CAAGCCTTCTGAGAGGTGCAGAGGGCACTGTTCTGAGGCAATTGTTAACAAGTGGGCAGTCTTGGGTGTTTCATTGTGAAACCCTCGGTTTTAAGACTGGTTATCTCCTCTGAATGTGGTGAGGAGGG-
i canFam3.chr31             T 59014 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103932  25 - 198365852 I
e chlSab2.chr2               31602615  25 -  90373283 I
e papAnu2.chr3              167325405   2 - 180432695 I
e macFas5.chr3              178945385   2 - 192294377 I

a score=104035.000000
s hg38.chr21_GL383581v2_alt      5720 190 +    116689 GATGATAGGAAACCCGGATATAAG-GCAGAACAATGTTGCTTGGGCCATCTCTTACACCTCAGTGAAACGGAAAATGAAGGAAATGGAAGGCTGGCATGGGAACCCCGACTTATACAGTGATGCCCTTTTGCTGTTCCACGCGTCGCTTGGGGTGGAAGCCCTTCCTTGTCCCCTCGCCACCCACCCCGGA
s panTro4.chr21              19509365 190 +  32799110 GATGATAGGAAACTCGGATATAAG-GCAGAACAATGTTGCTTGGGCCATCTCTTACACCTCAGTGAAACGGAAAATGAAGGAAATGGAAAGCTGGCATGGGAACCCCGACTTATACAGTGATGCCCTTTTGCTGTTCCACGCGTCACTTGGGGTGGAAGCCCTTCCTTGTCCCCTCGCCACCCACCCCGGA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19936153 190 +  32716333 GATGATAGGAAACTCGGATATAAG-GCAGAACAATGTTACTTGGGCCATCTCTTACACCTCATTGAAACAGAAATTGAAGGAAGTGGACAGCTGGCATGGGAACCCCGACTTATACAGTGATGCCCTTTTGCTGTTCCACGTGTCGCTTGAGGTGGAGGCCCTTCCTTGTCCCCTCGCCCCCCACCCCGGA
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37406750 185 +  50472720 GATGATAGGAAACTCGGATACAA--ACAGAACCATATTATGTGGGCCATCTCTTAAACCTCAGTGAAATGGAAGTTGAAGGAAGCAGAAGGCTGGCATGGGAATCCCAACTTTTACAGGGATACCCTTTTGCTGTTCCATGCGTCGGTTGGGGTAGAAGCCCTTCCTTGTCCCCAC----CCTCCCCCAGG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28026112 168 +  39895921 GATTTCAGGAAAGTCAAATGTCAGAGTAGAAC-------CGTGGGTCACCCTCCACATCTTGGCAAAATGAAAGTTGAAGAAAGCAGAAGGCTCATCTGGAGACTCC-ATGTTTATGGGGAAGCCTTTCTTCTGGTCCAGCCGTCAGTTGCGGTAGAAGCCCTTCCCTCTTGCTCG---------------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91552417 838 +  98207768 I
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103932  25 - 198365852 I
e chlSab2.chr2               31602615  25 -  90373283 I
e papAnu2.chr3              167325405   2 - 180432695 I
e macFas5.chr3              178945385   2 - 192294377 I

a score=180954.000000
s hg38.chr21_GL383581v2_alt      5910 262 +    116689 GCCCCTTGG-TGCTTCCTTTCTGAACTGAATGCTTAGACTGGGGAACTAGAGGTGCCCGGAAAGGGAAGTCGGGAAGAAGAGACTATTCCTGTTGGTTCCTCCC--------CAGAGAT-GGGAGATGGTGAACAGGCG-tgtggagggcggaataatggtccccaaa-gatgtccacgccctcatcctca-gagtccgtgaacctgggaatgtgctgcctgac-gtacaaaagggactccgcagatgtgagtaagttaagagccctgatgtgggg
s panTro4.chr21              19509555 263 +  32799110 GCCCCTTGG-TGCTTCCTTTCTCAACTGAATGCTTAGACTGGGGAACTAGAGGTGCCCGGAAAGGGAGGTCGGGAAGAAGAGACTATTCCTGTTGGTTCCTCCC--------CAGAGAT-GGGAGATGGTGAACTGGCG-tgtggagggcggaataatggtccccaaa-gatgtccacgccctcatcctcaagagtccgtgaacctgggaatgtgctgcctgac-gtacaaaagggactttgcagatgtgagtaagttaagagccctgatgtgggg
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19936343 262 +  32716333 GCCCCTTGA-TGTTTCCTTTCTCAACTGAATGCTTAGATTGGGGAACTGGAGGTGCCTGGAGAGGGAGGTCGGGAAGAAGAGACTATTCCTGTTGGTTCCTTCC--------CAGAGAT-GGGAGATGGTGAACAGGCA-tgtggagggcggaataatggtccccaaa-gatgtccacgtcctcatcctca-gagtctgtgaacctgagaatgtgctgcctgac-atacaaaagggactttgcagatgtgagtaagttaagagccctgatgtgggg
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37406935 259 +  50472720 GTCCCTTGGTTGCTTCGTTTCTCAACTGAATGCTTAGATTGCGGAGCTGGAGGTGCCCAGAGAGGGAGGGCAGGAAGAAGAGACTATTTCTTCTGGTTCCTCAC--------CAGAGAT-GGGAGATGGTGAACAGGGG-tgtggagggcagagtaatggtccccaaa-gatgtctatatcctcttcctca-gagcctgtgaacctgggaatgtgctgcctgac-atacaaaagggactttgcacat----gtaacttcagagcccagacgtaggg
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91553255 240 +  98207768 GTCCCTTGG-CG-TCCCTCTCTTAAATGGATGTTTAGATTGTGAGAAT--AGGAACCCAG-----------TGGAGGAAGAGAATATTCTTTCTGGTTCCTCCG--------GAGATGT-GAGAGCTGGTGAGAGGAAGAtgtgttaggcagaataatgtcctttaaacgatgtccaggcactgatccccg-gacac------cttagggatatgtgatctg-----acagaaggggctttgctggtatgactgagttgaagatcctgacggggag
i mm10.chr16                I 838 I 1
s canFam3.chr31              28026280 231 +  39895921 GTCCTTTGG-TACTTCCTTTCTTAGCTGAATATCTGGATCACGGATATGGGAGTGCC------------------AGAAGAGA----------TGGCTCCCCCCCCCCAACTCAGAGATGGGGAGATAGTGAAAGGCAT-tgtgacaggcagagtaatggtccccaaa-catgtccacatcctaagcccca-gagcccat--------ggctgtgtgaccttacagcgcagatgggactttgcagatgtga-----ccagggatcctcagatagtg
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34403067 2924 +  48394510 M
e rheMac3.chr3              185103932  25 - 198365852 I
e chlSab2.chr2               31602615  25 -  90373283 I
e papAnu2.chr3              167325405   2 - 180432695 I
e macFas5.chr3              178945385   2 - 192294377 I

a score=86085.000000
s hg38.chr21_GL383581v2_alt      6172 91 +    116689 agattgtcttgcattgttgggccaagtggcctta-ta---ccaccaca-gggtccccaaaagatggagcagaggcagaaggttcagtaccagggag
s panTro4.chr21              19509818 94 +  32799110 agattgtcttgcattgttgggccaagtggcctta-taataccaccaca-gggtccccaaaagatggagcagaggcagaaggttcagtaccagggag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34405991 91 +  48394510 agattgtcttgccttgttgggccaggtagcctta-ta---ctatcaca-gggtccccaaaagatggagcagaggcagaagattcagtaccagagag
i ponAbe2.chr21             M 2924 C 0
s nomLeu3.chr25              19936605 91 +  32716333 agattgtcttgcattgttgggccaggtggcctta-ta---ccgtcaca-gggtcctcaaaagatggagcagaggcagaaggttcagtaccagagag
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37407194 91 +  50472720 agattgtcttgcattgttaggtccggtggcctca-ta---ccatcaca-gggttcccaaaagatggagcagaggcagaaaggttggtaccagagag
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91553496 79 +  98207768 tgactggattctacc------ctacgtggactca-cggt-cattaaca-gggtcctggaaagatagagta-----agaaag---agaaccagaggg
i mm10.chr16                I 1 C 0
s canFam3.chr31              28026511 86 +  39895921 agatgaccctggatagtagggctccgtaggcccactg---tgatcacaggggtccttcagagatggaag------aggagagtcag-accagagag
i canFam3.chr31             C 0 I 2331
e rheMac3.chr3              185103932 25 - 198365852 I
e chlSab2.chr2               31602615 25 -  90373283 I
e papAnu2.chr3              167325405  2 - 180432695 I
e macFas5.chr3              178945385  2 - 192294377 I

a score=105930.000000
s hg38.chr21_GL383581v2_alt      6263 125 +    116689 acaagaa---------ggatgcggccaaccttgctggaggaaggtgccctgagccaaagaatgggagtggcctctagaagctgggaaaggcaaggaaatggattct-ccctggaggctcgagaagga-----ccccagcc
s panTro4.chr21              19509912 125 +  32799110 acaagaa---------ggatgcggccaaccttgctggagaaaggtgccctgagccaaagaatgggagtggcctctagaagctggggaaggcaaggaaatggattct-ccctggaggctcgagaagga-----ccccagcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34406082 122 +  48394510 acaagaa---------gggtgcggccaaccttgctggaggaaggtgccctgagccaaagaatgggactggcctctagaagctgagaaaggcaaggaaatggattct-ccctggaggttc---aagga-----ccccagcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19936696 126 +  32716333 acaagaa---------ggatgcagccaaccttgctggaggacggtgccccgagccaaagaatgggagtggcctctagaagctgggaaaggcaaggaaatggattctgccctggagcctcgagaagga-----ccccagcg
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37407285 117 +  50472720 agaagaa---------ggatccggccaaccttgctggaggaaggcgccctgaaccaaagactgggagtgccctctag---------aagacaaggaaatgggttctcccctggagcctccagaagga-----ccccagcc
i calJac3.chr21             C 0 I 307
s mm10.chr16                 91553575 129 +  98207768 agggtaacacaaggctgactgggcccagcattgacagagaaaagggccacaagccaaagaatgccaatagcttccagagcacagaaaag----ggagatg-------ccctggcgactccagaaggaacaagccccaccc
i mm10.chr16                C 0 C 0
e canFam3.chr31              28026597 2331 +  39895921 I
e rheMac3.chr3              185103932  25 - 198365852 I
e chlSab2.chr2               31602615  25 -  90373283 I
e papAnu2.chr3              167325405   2 - 180432695 I
e macFas5.chr3              178945385   2 - 192294377 I

a score=44312.000000
s hg38.chr21_GL383581v2_alt      6388 50 +    116689 ctgctgataacttgactttagtcagtgagactgactttaaacttctgacc
s panTro4.chr21              19510037 50 +  32799110 ctgctgataacttgactttagtcagtgagactgactttaaacttctgacc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34406204 50 +  48394510 ctgctgataacttgactttagttagtgagactgactttaaacttctgacc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19936822 50 +  32716333 ctgctgataacttgactttagtcagtgagactgactttcaacttctgacc
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37407709 50 +  50472720 CTGCTGAGTAACTGACTTCAGTCAGTGAGACTGACTTTAAACTTCTGACT
i calJac3.chr21             I 307 C 0
s mm10.chr16                 91553704 42 +  98207768 ccgctaccatctccaccct--------aggcctgcttcacacacctgacc
i mm10.chr16                C 0 I 334
e canFam3.chr31              28026597 2331 +  39895921 I
e rheMac3.chr3              185103932 25 - 198365852 I
e chlSab2.chr2               31602615 25 -  90373283 I
e papAnu2.chr3              167325405  2 - 180432695 I
e macFas5.chr3              178945385  2 - 192294377 I

a score=13956.000000
s hg38.chr21_GL383581v2_alt      6438 19 +    116689 agcagaactataagaaaat
s panTro4.chr21              19510087 19 +  32799110 agcagaactataagaaaat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34406254 19 +  48394510 agcggaactataagaaaat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19936872 19 +  32716333 agcagaactataagaaaat
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37407759 19 +  50472720 GGCAGAACTGCAAACAAAC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91553746 334 +  98207768 I
e canFam3.chr31              28026597 2331 +  39895921 I
e rheMac3.chr3              185103932 25 - 198365852 I
e chlSab2.chr2               31602615 25 -  90373283 I
e papAnu2.chr3              167325405  2 - 180432695 I
e macFas5.chr3              178945385  2 - 192294377 I

a score=23671.000000
s hg38.chr21_GL383581v2_alt      6457 23 +    116689 aaatttagatgtgattttttaaa
s panTro4.chr21              19510106 23 +  32799110 aaatttAGATGTGAtttttttaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34406273 23 +  48394510 aaatttAGATGGGAtttttattt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19936891 23 +  32716333 aaatttAGATGTGAtttttttaa
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178945387 23 - 192294377 AAATTTAGATTTGAtttttattt
i macFas5.chr3              I 2 C 0
s papAnu2.chr3              167325407 23 - 180432695 AAatttagatttgatttttattt
i papAnu2.chr3              I 2 C 0
s calJac3.chr21              37407778 16 +  50472720 ACATCTGGATTTGAtt-------
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91553746 334 +  98207768 I
e canFam3.chr31              28026597 2331 +  39895921 I
e rheMac3.chr3              185103932 25 - 198365852 I
e chlSab2.chr2               31602615 25 -  90373283 I

a score=2957990.000000
s hg38.chr21_GL383581v2_alt      6480 1036 +    116689  
s panTro4.chr21              19510129 1038 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34406296 1030 +  48394510  
i ponAbe2.chr21             C 0 M 1133
s nomLeu3.chr25              19936914 1042 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185103957 1033 - 198365852  
i rheMac3.chr3              I 25 C 0
s macFas5.chr3              178945410 1035 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167325430 1038 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31602640 1040 -  90373283  
i chlSab2.chr2              I 25 C 0
s calJac3.chr21              37407794 1033 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91553746  334 +  98207768 I
e canFam3.chr31              28026597 2331 +  39895921 I

a score=475986.000000
s hg38.chr21_GL383581v2_alt      7516 228 +    116689 TTATCTTGACTTGCTCCAGGTTTGGAAGAAGCCTGTGTAGGATCTGTGTTTCATTTCTGGCTTTGATGTCTGGGCGTCAGTTTCCCTGGGGTTAATTATTAGCTTAATGTGAAGGCAGCATTGTGGAAATTTCTCTGCATAGTTCGGATGCTATTCAGATCTGTCTGTGTGACTGTCAT-GCAGGCCTCTCTGTGTGACTGTGAGGGAGCATTGACCTGCCACCACCCC
s panTro4.chr21              19511167 228 +  32799110 TTATCTTGACTTGCTCCAGGTTTGGAAGAAGCCTGTGTAGGATCTGTGTTTCATTTCTGGCTTTGATGTCTGGGTGTCAGTTTCCCTGGGGTTAATTATTAGCTTAATGTGAAGGCAGCATTGTGGAAATTTCTCTGCATAGTTCGGGTGCTATTCAGATCTGTCTGTGTGACTGTCAC-GCAGGCCTCTCTGTGTGACTGTGAGGGAGCATTGACCTGCCACCACCCC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19937956 228 +  32716333 TTATCTTGACTTGCTCCAGGTTTGGAAGAAGCCTGTGTAGGATCTGTGTTTCATTTCTGGCTTTGATGTCTGGGTGTCAGTTTCCCTGGGGTTAATTATTAGCTTAATGTGAAGGCAGCATTGTGGAAATTTCTCTGCATAGTTCGGGTGCTATTCAGATCTGTCTGTGTGACTGTCAT-GCAGGCCTGTCTGTGTGACTGTGAGGGAGCGTTGACCTGCCACCACCCC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185104990 227 - 198365852 TTATCTTGACTTGCTCCAATTTTGGGAGAAGCCTGTGTAGGAGCTGTGTTTCATCTCTGGGTTTGATGTCTGGGCATCAGTTTCCCTGGGCTTAATTATTAGCTTACTGTGAAGGCACCGTTGTGGAAATTTCTCTGCGTAGTTAGGGTGCTATTCAGGTCTGTCTGTGTGACTGTCAT-GCAGGACTGTCTGTGTAACTGTG-GGGAGCACTGACCTGCCACAACCCC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178946445 227 - 192294377 TTATCTTGACTTGCTCCAATTTTGGGAGAAGCCTGTGTAGGAGCTGTGTTTCATCTCTGGGTTTGATGTCTGGGCATCAGTTTCCCTGGGCTTAATTATTAGCTTACTGTGAAGGCACCGTTGTGGAAATTTCTCTGCGTAGTTAGGGTGCTATTCAGGTCTGTCTGTGTGACTGTCAT-GCAGGACTGTCTGTGTAACTGTG-GGGAGCACTGACCTGCCACAACCCC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167326468 227 - 180432695 TTATCTTGACTTGCTCCAATTTTGGGAGAAGCCTGTGTAGGAGCTGTGTTTCATTTCTGGGTTTGATGTCTGGGCATCAGTTTCCCTGGGCTTCATTATTAGCTTACTGTGAAGGCACCGTTGTGGAAATTTCTCTGCGTAGTTAGGGTGCTATTCAGGTCTGTCTGTGTGACTGTCAT-GCAGGACTGTCTGTGTAACTGTG-GGGAGCACTGACCTGCCACAACCCC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31603680 227 -  90373283 TTATCTTGACTTGCTCCAGTTTTGGGAGAAACCTGTGTAGGAGCTGTGTTTCATTTCTGGGTTTGATGTACGGGCATCAGTTTCCCTGGGCTTAATTATTAGCTTACTGTGAAGGCACCGTTGTGGAAATTTCTCTGCGTAGTTAGGGTGCTATTCAGgtctgtctgtgtgactgtcatggcaggactgtc--tgtAACTGTGAGGGAGCAGTGACCTGCCACAACCCC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37408827 203 +  50472720 TTATCTCAGCTTGCTCCGGGTTTGGGAGAAGCCTGCGTAGGACGCGTGTTTCACTTCTGGCTTTGAAGTCTGGACATCCGTTTCCCTGGGTTTAACTCTTAGCTTAACGTTAAGGCAGCACTGTGGAAATGTATCTGTGTAGCCAGGGTGC-------------------------CAC-GCAGGCCTGCCTCTGTGACTGTCAGGGAGAACTGACCCGCCACAATGCC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91553746 334 +  98207768 I
e canFam3.chr31              28026597 2331 +  39895921 I
e ponAbe2.chr21              34407326 1133 +  48394510 M

a score=776343.000000
s hg38.chr21_GL383581v2_alt      7744 311 +    116689 CCTCTGGAAG----CATCCAGTCCCCAACTG-GCTTTGGGCATTGCTAGGT--CATAGCAGCCACAGCACACCTGGTGGGCCT-------------GCCTCTTGCCACGCAGCT-TTACCTGTCTGCCTTCGGCCCAGGATGTCATGAGGCCTGCTGTGTGTCAGGAGAAGTGTT-GTTAGCTGGTT-------------GGGTGAAGGTCACCCAGAGCTCATAGGTGTGGAGGGGAGGGGCATCCTATAACTAAACAAATGGCCGCAGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCAGGCTGTCAGCTGATCTCTTTGAGGTTGAGCGCATTTA
s panTro4.chr21              19511395 311 +  32799110 CCTCTGGAAG----CATCCAGTCCCCAACTG-GCTTTGGGCATTGCTAGGT--CATAGCAGCCACAGCACACCTGGTGGGCCT-------------GCCTCTTGCCACGCAGCT-TTACCTGTCTGCCTTCGGCCCAGGATGTCATGAGGCCTGCTGTGTGTCAGGAGAAGTGTT-GTTAGCTGGTT-------------GGGTGAAGGTCACCCAGAGCTCATAGGTGTGGAGGGGAGGGGCATCCTATAACTAAACAAATGGCCGCAGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCAGGCTGTCAGCTGATCTCTTTGAGGTTGAGCGCATTTA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19938184 311 +  32716333 CCTCTGGAAG----CATTGAGTCCCCAGCTG-TCTTTGGGCATTGCTAGGT--CATAGCAGCCACAGCACACCTGGTGGGCCT-------------GCCTCTTACCATGCAGCT-TTACCTATCTGCCTTCGGCCCAGGATGTCATGAGGCCTGCTGTGTGTCAGGAGAAGTGTT-GTTAGCTGGTT-------------GGATGAAGGTCACCCAGAGCTTATAGGTGTGGAGGGGAGGGACATCCTATAACTAAACAAATGGCTACAGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCAGGCTGTCAGCTGATCTCTTTGAGGTTGGGCGCATTTG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185105217 314 - 198365852 TCTCTGGAAGCAAGCATCCAGTCCCC-GCTG-GCTTTGGGGATTCCTAGGT--CATAGCAGCCACAGCACGCCCATTGGGCCT-------------GCCTCTCACCAGGCAGCT-TTACCTGTCTGTCTTCGGCCCAGGATGTCGTGAGGCCTGCTGTGTGTCAGGAGGAGTGTT-GTCAGCTGGTT-------------GGATGAAGGTCACCCAGAGCTCATAGGTGTGGAGGGGAAGGGCATCCTATAACTAAACAAATGGCCGCGGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCAGGCTGTCAGCTGGTCTCTTTGAGGTTGGTTGCATTTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178946672 314 - 192294377 TCTCTGGAAGCAAGCATCCAGTCCCC-ACTG-GCTTTGGGGATTCCTAGGT--CATAGCAGCCACAGCACACCCATTGGGCCT-------------GCCTCTCACCAGGCAGCT-TTACCTGTCTGTCTTCGGCCCAGGATGTCGTGAGGCCTGCTGTGTGTCAGGAGGAGTGTT-GTCAGCTGGTT-------------GGATGAAGGTCACCCAGAGCTCATAGGTGTGGAGGGGAGGGGCATCCTATAACTAAACAAATGGCCGCGGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCAGGCTGTCAGCTGGTCTCTTTGAGGTTGGGTGCATTTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167326695 314 - 180432695 TCTCTGGAAGCAAGCATCCAGTCCCC-GCTG-GCTTTGGGGATTCCTAGGT--CATAGCAGCCACAGCACACCCGTTGGGCCT-------------GCCTCTCACCAGGCAGCT-TTACCTGTCTGTCTTCGGCCCAGGATGTCGTGAGGCCTGCTGTGTGTCAGGAGGAGTGTT-GTCAGCTGGTT-------------GGATGAAGGTCACCCAGAGCTCATAGGTGTGGAGGGGAGGGGCATCCTATAACTAAACAAATGGCCGCGGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCAGGCTGTCAGCTGGTCTCTTTGAGGTTGGGTGCATTTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31603907 314 -  90373283 TCTCTGGAAGCAAACATCCAGTCCCC-GCTG-GCTTTGGGGATTCCTAGGT--CATAGCAGCCACAGCACACCTGTTGGGCCT-------------GCCTCTCACCAGGCAGCT-TTGCCTGTCTGTCTTCGGCCCAGGATGTCGTGAGGCCTGCTATGTGTCAGGAGGAGTGTT-GTTAGCTGGTT-------------GGATGAAGGTCACCCAGAGCTCATATGTGTGGAGGGGAGGGGCATCCTATAACTAAACAAATGGCCGCGGA--CTTGGCAATTCATCTTTCAGAAGAAGAGCCAGTGGTCGGTCTGTCAGCTGGTCTCTTTGAGGTTGGGTGCATTTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37409030 301 +  50472720 TCTCTGGAAGCAGGCATTCAGTCCCCAGCTC-ACCTTGGGAATTGCTAGGT--CATAGCAGCCACAGCACGCCCAGTAGGCCT-------------GCCTCCCGCCGCGCGGC--TTACCTG--TGCCTTCAGCTCAGGTTGTCGTGAGGCCTACTGTGTGTCAGGGGAAGTGTT----AGCTAGTT-------------GGATGAAGGTCACCCAGAGCGCGTAGGTGTGGAGGGGAAGGGCATCCTATAACTGAACAAACGGCCACAGA--CTTCG--------CTTTCTGAAGAAGAGCCGGTGGTCAGGCTGTCGGCTGATCTCTTTGAGGCTGTACACACTTC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28028928 342 +  39895921 CTCCTGGCAGCAGGGCTCCAGTCCTGGGCTCTGCCCTGGGATATGCCAGGCCGCACAGCAGCCACAGCAAGCGAAGTGGGCCTGCCCTGGAGAGCAGCCCCGTTCTGGGCTGCTGCGGCCTGCCCACCGTTGGCCCTGGCTTTCGCCACGCCTGCTGTCAGTTGGCAGGAGTGTGGGGTAGCTGGTTGAAGAATGATCTGGAATGAAGGCCAGCCTGAGCTCCGAGCTGTGGAGACAGTGGGCATTCTGTAAGTAAACAAGTGGCCACAGACTCTTGGTTATGCATCCTTCCGAGGAAGAGCTGGCCAACTGGCCACCA------TTCTTCAAGATTGAATGCATTTA
i canFam3.chr31             I 2331 C 0
e mm10.chr16                 91553746 334 +  98207768 I
e ponAbe2.chr21              34407326 1133 +  48394510 M

a score=299104.000000
s hg38.chr21_GL383581v2_alt      8055  95 +    116689 CCGAAAATGTG---TGGCTTGAATTTCCTGCTTTGAATTTTGGAACA------GCATGTTTTTCAAACCTTTC-TTCCACCTTCTGGGCATTTCTTATTAATCTT
s panTro4.chr21              19511706  95 +  32799110 CCGAAAATGTG---TGGCTTGAATTTCCTGCTTTGAATTTTGGAACA------GCATGTTTTTCAAACCTTTC-TTCCACCTTCTGGGCATTTCTTATTAATCTT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19938495  95 +  32716333 CCGAAAATGTG---TGGCTTGAATTTCCTGCTTTGAATTTTGGAACA------GCATGTTTTTCAAACCTTTC-TTCCACCTTCTGGGCATTTCTTATTAATCTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185105531  95 - 198365852 CCGAAAATGCG---TGGCTTGAATTTCCTCCTTTGGATTTTGAAACA------GCATGTTTTTCAAACCTTTC-GTCCAGCTTCTGGGCGTTTCTTATTAATCTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178946986  95 - 192294377 CCGAAAATGCG---TGGCTTGAATTTCCTCCTTTGGATTTTGAAACA------GCATGTTTTTCAAACCTTTC-GTCCACCTTCTGGGCGTTTCTTATTAATCTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167327009  95 - 180432695 CCGAAAATGCG---TGGCTTGAATTTCCTCCTTTGGATTTTGAAACA------GCATGTTTTTCAAACCTTTC-GTCCACCTTCTGGGCGTTTCTTATTAATCTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31604221  95 -  90373283 CCGAAAATGTG---TGGCTTGAATTTCCTCCTTTGGATTTTGAAACA------GCATGTTTTTCAAACCTTTC-GTCCACCTTCTGGGCGTTTCTTATTACTCTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37409331  95 +  50472720 CCGAAAATGTG---TGGCTTCAATTTCCTGCTTTGAATTCTGGAAGA------GCATATTTTTCTAACCTTTC-TTCCACCTTCTGGGCATTTCTCATTAATCTT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91554080  89 +  98207768 CTGAAAACGTGGTTTGGTTTGTGTTTCCTGCTTTGCTTTCTGGAGCC------GCATGT---------CTTCC-TTCCCACCTCTGAATGTTTCTCGTTAATCTT
i mm10.chr16                I 334 I 652
s canFam3.chr31              28029270 101 +  39895921 CTGACAACGTG---TGGTTTGAGTTTCCTGCTCTGAATTCTGGGACATGCTCTGCATGTTTTTCAAATCTTTCTTTCCACTCCCTGGGCGTTTCTCATTAATCT-
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34407326 1133 +  48394510 M

a score=536618.000000
s hg38.chr21_GL383581v2_alt      8150 351 +    116689 TTTGGTC-----AAAAGCCTTATCTTGATTATGTTTTCTTTCTAAGACAAAGGGCTCCCTGTGAAGTACCTGCTTGGGAAAGGGAGGAGTTGTGGCAGTTTCTTCTAGGTCCCCGAAGGCTCCCTGTGAAGTACCTGCTTGGGGAAGGGAGAGGTTGTGGTTGTTTCTTCCAGGTCACCCCAAAGAGAGGGATTCTGATATTGGTGGTGTTTCCGGGGGAGTATA-----TTCTTTCTCTGTTTATTGCCCCCTAACCtttttttttttttttttt---------------------------------------------------------------------------tttttggagacagagtctctctctgtcgcccagactggagtgcaatggtgcgatctcagctccctgcaacctctgcctcctgggt
s panTro4.chr21              19511801 348 +  32799110 TTTGGTC-----AAAAGCCTTATCTTGATTATGTTTTCTTTCTAAGACAAAAGGCTCCCTGTGAAGTACCTGCTTGGGAAAGGGAGGAGTTGTGGCTGTTTCTTCCAGGTCCCCGAAGGCTCCCTGTGAAGTACCTGCTTGGGAAAGGGAGAGGTTGTGGTTGTTTCTTCCAGGTCACCCCAAAGAGAGGGATTCTGATATTGGTGGTGTTTCCAGGGGAGTATA-----TTCTTTCTCTGTTTATTGCCCCCTAACC---ttttttttttttttt---------------------------------------------------------------------------tttttggagacagagtctgtctctgtcgcccagactggagtgcaatggtgcaatctcagctccctgcaacctctgcctcctgggt
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19938590 341 +  32716333 TTTGGTC-----AAAAGCCTTATCTTGATTATGTTTTCTTTCTAAGACAAAAGGCTCCCTGTGAAGTATCTGCTTGGGGAAGGGAGGAGTTGTGGCTGTTTCTTCCAGGTCTCCAAAGGCTCCCTGTGAAGTACCTGCTTGGGGAAGGCAGAGGTTGTGGTTGTTTCTTCCAGGTCACCCCAAAGAGAGGGATTCTGATATTGGTGGTGTTTCCGGGGGAGTATA-----TTCTTTCTCTGTTTATTGCCCCCTAACC---ttttttttttttttt---------------------------------------------------------------------------------gagacagagtctctctctgtcgcccatgctggagtgcaatggcgcaatctcagctccctgcaacctctgcctcctggg-
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185105626 358 - 198365852 TTTGGTG-----AAAAGTCTTATCCTGATCATGTTTTCTTTCTAAGACAA-----------------------------------------------------------------AAGGCTCCCTGTGGAGCACCTGCCTGGGGAAGGGAGAGGTTGGGCTTGTTTCTTCTAGGTCACCCCAGAGAGGGGGATTCTGAAATTGGTGGTGTTTCCAGGGGAGTATA-----TTCTTTCTCTGTTTATTGTCCCCTAACC---ttttttttttttttttttttgagacggagtcttgctgtgtcgcccagcctggagtgcagtggcgtgatctcggctccctgcaaccAtttattttttgagacggagtcttgctgtgtcgcccagcctggagtgcagtggcgtgatctcggctccctgcaacctctgcctcctgggt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178947081 283 - 192294377 TTTGGTG-----AAAAGTCTTATCCTGATCATGTTTTCTTTCTAAGACAA-----------------------------------------------------------------AAGGCTCCCTGTGGAGCACCTGCCTGGGGAAGGGAGAGGTTGGGCTTGTTTCTTCTAGGTCACCCCAGAGAGGGGGATTCTGAAATTGGTGGTGTTTCCAGGGGAGTATA-----TTCTTTCTCTGTTTATTGTCCCCTAACC---ttttttttttttttt---------------------------------------------------------------------------ttttttgagacggagtctcactgtgtcgcccagcctggagtgcagtggcgtgatctcggctccctgcaacctctgcctcctgggt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167327104 279 - 180432695 TTTGGTC-----AAAAGTCTTATCTTGATCATGTTTTCTTTCTAAGACAA-----------------------------------------------------------------AAGGCTCCCTGTGAAGTACCtgcctggggaagggagaggtTGAGCTTGTTTCTTCTAGGTCACCCCAAAGAGAGGGATTCTGAAATTGGTAGTGTTTCCAGGGGAGTATA-----TTCTTTCTCTGTTTATTGTcccctaacc---ttttttttttt-------------------------------------------------------------------------------ttttttgagacagagtctcgctgtgtcgcccagcctggagtgcagtggcgtgatctcggctccctgcaacctctgcctcctgggt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31604316 283 -  90373283 TTTGGTC-----AAAAGTCTTATCTTGATCATGTTTTCTTTCTAAGACAA-----------------------------------------------------------------AAGGCTCCCTGTGAAGTACCTGCCTGGGGAAGGGAGAGGTTGAGGTTGTTTCTTCCAGGTCACCCCAAATAGAGGGATTCTGATATTGGTGGTGTTTCCAGGGGAGTATA-----TTCTTTCTCTGTTTATTGTCCCCTAACC---ttttttttttttttt---------------------------------------------------------------------------ttttttgagacagagtctcactgtgtcacccagcctggagtgcagtggcgtgatctcggctccctgcaacctctgcctcccgggt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37409426 269 +  50472720 TTTGGTC-----AAAAGTCTTTTCTTAATTATGTTTTCTTTCTAAGACAA-----------------------------------------------------------------AACGCTCCCTGTGAAGTATCTGCTTAGGGAAGGGAGGAGTTGACGTTGTTTCTTCTAGGTCACCCCAAAGGGAGGGATTCTGGTATTGATGGTGTTTCCAGGAAAGTATATCCTTttctttctctgttta----------------ttatttttttgtttt---------------------------------------------------------------------------------gagacagaatctccctctgttgcccaggctggagtacagtggctcgatctcagctcactgcacactctgcctcctgggt
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28029371 126 +  39895921 TTCAATCTCAGAGAAAGGTTCATCATGATTG-----TGTTTCCTTGCGAGAGCA-------------------------------------------------------------AAGGCTCCT------GTGCTTGCA---------------------------CTCCCCGGCC--------------------------------GAGTCCTGTGAAGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCAGGGGCTGGAG------------------------------CTGTGCCTTCCAGGT
i canFam3.chr31             C 0 I 34
e mm10.chr16                 91554169 652 +  98207768 I
e ponAbe2.chr21              34407326 1133 +  48394510 M

a score=348981.000000
s hg38.chr21_GL383581v2_alt      8501 149 +    116689 tcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgctcaccaccgcacctggctaacttttatatttttagtagagac-agagttttgccatgttggccacactggtctcaaactcctgacctcgagtgatctgcc
s panTro4.chr21              19512149 149 +  32799110 tcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgctcgccaccacacctggctaacttttatatttttagtagagac-agagttttgccatgttggccacactggtctcaaactcctgacctcaagtgatctgcc
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19938931 142 +  32716333 --------ttctcctgcctcaacgtcctgagtagctgggattacaggcactcaccaccgcacctggctaacttttatatttttagtagagacaagagtttcaccatgttggccacactggtctcgaactcctgacctcaagtgatctgcc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185105984 149 - 198365852 tcaagcgattctcctgcctcagcctcctgagtagctgggagtacaggcactcaccaccgcacctggctaacttttatatttttagtagagac-agggttttgccatgttaaccacactggtctcgaactcctgacctcaagtgatctgcc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178947364 149 - 192294377 tcaagcgattctcctgcctcagcctcctgagtagctgggagtacaggcactcaccaccgcacctggctaacttttatatttttagtagagac-agggttttgccatgttaaccacactggtctcgaactcctgacctcaagtgatctgcc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167327383 149 - 180432695 tcaagcgattctcctgcctcagcctcctgagtagctgggagtacaggcactcaccaccgcacctggctaacttttatatttttagtagagac-agggtttcgccatgttaaccacactggtctcgaactcctgacctcaagtgatctgcc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31604599 149 -  90373283 tcaagcgattctcctgcctcagcctcctgagtagctgggagtacaggcgctcaccaccacacctggctaacttttatatttttagtagagac-agggtttcgccatgttgcccacactggtctcgaactcctgaccccaagtgatctgcc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37409695 149 +  50472720 tcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcaggcaccactgcacccagctaaattttgtatttttagtagagac-agcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatcttcc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91554169 652 +  98207768 I
e canFam3.chr31              28029497  34 +  39895921 I
e ponAbe2.chr21              34407326 1133 +  48394510 M

a score=476045.000000
s hg38.chr21_GL383581v2_alt      8650 203 +    116689 ttccttggcctcccacagtgctgggattataggtgtgagccactgagctcggGCCGTGTTGtcctctaactttaatgtgtgtgagaagcagctggaaagcttgtttaaaatgcagattTCCTG-----------GGGGCCTCAGGACCTGCACTTTAAC-----CAGCACCCCTGTGATTGCGAT-----------GCTGGGGGTCCTTGAGAGAC--GACAACTCTGATGG
s panTro4.chr21              19512298 203 +  32799110 ttccttggcctcccacagggctgggattataggtgtgagccactgagctcggGCCGTGTTGtcctctaagtttaatgtgtgtgagaagcagctggaaagcttgtttaaaatgcagatttcctg-----------ggggcctcaggacctgcactttaac-----cagcacccccgtgattgcgat-----------gctgggggtccTTGAGAGAC--AACAACTCTGATGG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19939073 201 +  32716333 ttccttggcctcccacagtgctgggattataggtgtgagccaccgagctcggGCCATATTGtcctctaactttaatgtgtgtgagaagcagttggaaagcttgtttaaaatgcagatttcctg-----------ggggcctcaggacctgcattttaac-----cagcaccca-gtgattgtgat-----------gctgggggtccTTGAGAGAC---ACAACTCTGATGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185106133 218 - 198365852 ttcctcggcctcccacagtgctgggattacaggtgtgagccaccatgctc-tgccATATTGtcctctaactttcatgtgcatgagaagtagctggaaagcttgtttaaaatgcagatttcctggcct--ggggtggggcctggggacctgcattttaaccagcgcagcaccccaatgattgtgat-----------gctgggggtccTTGAGAAACACAGCAACTCTGATGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178947513 218 - 192294377 ttcctcggcctcccacagtgctgggattacaggtgtgagccaccatgctc-tgccATATTGtcctctaactttcatgtgcatgagaagtagctggaaagcttgtttaaaatgcagatttcctggcct--ggggtggggcctggggacctgcattttaaccagcgcagcaccccaatgattgtgat-----------gctgggggtccTTGAGAAACACAGCAACTCTGATGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167327532 218 - 180432695 ttcctcggcctcccacagtgctgggattacaggtgtgagccaccatgctc-tgccATATTGTCCTCTAACTTTCATGTGCATGAGAAGTAGCTGGAAagcttgtttaaaatgcagattttctggcct--ggggtggggcctggggacCTGCATTTTAACCAGCACAGCACCCCAATGATTGTGAT-----------GCTGGGGGTCCTTGAGAAACACAGCAACTCTGATGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31604748 213 -  90373283 ttcctcggcctcccacagtgctggaattacaggtgtgagccactgtgctc-tgccGTAtggtcctctaactttcatgtgcatgagaagtagctggaaagcttgtttaaaatgcagatttcctggcct--ggggtggggcctggggacctgcattttagc-----cagcaccccagtgattgtgat-----------gctgggggtccTTGAGAAACACAGCAACTCTGATGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37409844 205 +  50472720 tgctttggcctcccaaagtgctgggattacaggtgtgagccactgtgctt-ggccATATTGTCCCCTaattttaatatgcatgagaagc--------aacttgttgaaaatgcagatttcctggtct--gggttggggtctggggacctgcattttaac-----cagcaccccagggattgtgat-----------gctgggggtccTTGAGAAACACAGCAGCTCTGATGG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28029531 199 +  39895921 TTCCCTGG-----------------------GGTGGGTGTTACTTTGCTG----TTTGTAGTCTtcagattttactgtgcctaagaatcagctgggaagcttgttgcaaatgtggatttccaggtctggggggtgtggcctgggcatctgcatttccag-----cgctgccttggcgattgtgatacGGGGTGGGGGTGGGGGGTCCTTGAGAAACAC-ACAACTCTCATGG
i canFam3.chr31             I 34 C 0
e mm10.chr16                 91554169 652 +  98207768 I
e ponAbe2.chr21              34407326 1133 +  48394510 M

a score=1536883.000000
s hg38.chr21_GL383581v2_alt      8853 488 +    116689  
s panTro4.chr21              19512501 488 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34408459 488 +  48394510  
i ponAbe2.chr21             M 1133 C 0
s nomLeu3.chr25              19939274 487 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185106351 479 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178947731 479 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167327750 475 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31604961 478 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37410049 478 +  50472720  
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28029730 456 +  39895921  
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91554169 652 +  98207768 I

a score=1789553.000000
s hg38.chr21_GL383581v2_alt      9341 496 +    116689  
s panTro4.chr21              19512989 497 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34408947 501 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19939761 494 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185106830 495 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178948210 495 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167328225 495 - 180432695  
i papAnu2.chr3              C 0 I 296
s chlSab2.chr2               31605439 495 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37410527 504 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91554821 525 +  98207768  
i mm10.chr16                I 652 I 2
s canFam3.chr31              28030186 502 +  39895921  
i canFam3.chr31             C 0 C 0

a score=1033616.000000
s hg38.chr21_GL383581v2_alt      9837 291 +    116689 GAAAGTTCATTCTTTCGCTGGTTTCAGGAGAAAGGTTGTAAAAATAGGCTTCC-ACCATGGAAGAACAGGAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCGGATTGATTTAACCTTATAGACCAAATATGGCCTGATCAGAAATTTGTTTGGTTAATTACAATGAATTCTGAGTTTCTCAACTGGTTTTC-CATTTTGCATATTATCCTG-----GCTCTTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACATAT
s panTro4.chr21              19513486 288 +  32799110 GAAAGTTCATTCTTTCGCTGGTTTCAGGAGAAAG---GTAAAAATAGGCTTCC-GCCATGGAAGAGCAGGAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCGGATTGATTTAACCTTATAGACCAAATATGGCCTGATCAGAAATTTGTTTGGTTAATTACAATGAATTCTGACCTTCTCAACTGGTTTTC-CATTTTGCATATTATCCTG-----GCTCTTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACATAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34409448 291 +  48394510 GAAAGTTTATTCTTTCGCTGGTTTCGGGAGGAAGGTTGTAAAAATAGGCTTCC-GCCATGGAAGAGCAGGAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCGGATTGATTCAACCTTATAGACCAAATATGGCCTGATCAGAAATTTGTTTGGTTAATTACAATGAATTCTGAGTTTCTCAACTGGTTTTC-CATTTTGCATATTATCCTG-----GCTCTTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACATAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19940255 291 +  32716333 gaaagtttattcttttgctggtttcaggagaaaGGTTGTAAAAATAGGCTTCT-ACCATGGAAGAGCCGGAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCGGATTGATTTAACCTTATAGACCAAATATGGCCTGATCAGAAATTTGTTTGGTTAATTACAATGAATTCTGAGTTTCTCAACTGGTTTTC-CATTTTGCATATTATCCTG-----GCTCTTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACGTAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185107325 291 - 198365852 GAAAGTTTATTCTTTCGCTGGTTTCGGGAGAAGGGTTGTAAAAGTAGGCTTCC-ACCATGGAAGAGCAGGAGGCAGCTTTCAGTCTTCA---TCTTCGGGCTTAAAAATCATATTGATTTAACCTTATAGACCAAATATGGCCTGATCAGAAATTTGTTTTGTTAATTACAATGAATTCTCAGTTTCTCAAGTGGTTTTC-CATTTTGTGTATTATCCTG-----GCTCCTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACATAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178948705 291 - 192294377 GAAAGTTTATTCTTTCGCTGGTTTCGGGAGAAGGGTTGTAAAAGTAGGCTTCC-GCCATGGAAGAGCAGGAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCAGATTGATTTAACCTTATAGACCAAATATGGCCTGATCAGAAATTTGTTTTGTTAATTACAATGAATTCTCAGTTTCTCAAGTGGTTTTC-CATTTTGTGTATTATCCTG-----GCTCCTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACATAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167329016 291 - 180432695 gaaagttTATTCTTTTGCTGGTTTCCGGAGAAGGGTTGTAAAAGTAGGCTTCC-GCCATGGAAGAGCAGGGGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCAGATTGATTTAACCTTATAGACCAAATATGGCCTGATCAgaaatttgttttgttaattaCAATGAATTCTCAGTTTCTCAAGTGGTTTTC-CATTTTGTGTATTATCCTG-----GCTCCTTCATCTCTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTtgcaatataaatacatat
i papAnu2.chr3              I 296 C 0
s chlSab2.chr2               31605934 290 -  90373283 GAAAGTTTATTCTTTTGTTGGTTTTGGGAGAAGGGTTGTAAAAATAGGCTTCC-ACCATGGAAGAGCA-GAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTGAAAAGTCAGATTGATTTAACCTTATAGACCAAACATGGCCTGATCAGAAATTCGTTTTGTTAATTACAATGAATTCTCAGTTTCTCAAGTGGTTCTC-CATTTTGTATATTATCCTG-----GCTCCTTCATCTGTCTCTTGCCTCTTCAAGCTTTTGCAGAATTGGCCATCACTTGATTTGCAATATAAATACATAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37411031 291 +  50472720 GAAAGTTTCTTCTTTTACTGGTTTCAGGAGAAGGGTTATAAAAACAGGCTTCT-GCCACGGAAGGGCAGGAGGCAGCTTTTAGTCTTCA---TCTTCGGGCTTAAAAATCTGATTGATTTAACCTTATAGATCAAATAGGGCCTGATCGGAAATGTTTTTGGTTAATTACAATGAATTCTCAGTTTCTCAACTGGTTTTC-CATTTTGTATGTTATCCTG-----ACTCCTTCATCTTCCTCTTACCTCTTCAAGCTTCTGCAGAACTGGCCATCACTTGATTTGCAATATAAATACATAT
i calJac3.chr21             C 0 I 313
s mm10.chr16                 91555348 242 +  98207768 GACACATGATCCCTTTGCTCTGTACAGAGTGAGGGTTCT---------CTTCT-GCCCTGGAAAGGCAAGAGATAGCTTTCAGGTTTA-------------------------------TAACCTCAAAGTCCAAACTGAGCCTACTGAGGAATGTGTTCAGCAGACTACAGTGAACTCTCAGTTTCTCACCTGGTTTTC-TGTTCTGAATAATCTAGTGTTCACGCCCTTTGTGCTGCCTCTCGCCTC----AG---TCGCA-----GGCCACCACTTGATTTGC-----AAAGCCGTAT
i mm10.chr16                I 2 I 4
s canFam3.chr31              28030688 286 +  39895921 -GGAGACTGTGCTCTCATTGGTTTCGGGAG-AGGCTCGTATAAGAGGGCTTCCTGTCTTGAAAGGCCAGGaggcaccttttagccttcatcttcttcaggtttgaaaatctggtttattgaacctGATGGGCCAGCTGTGGCCTACCGAAGAACATGTTCACTAAATCACTACTAATTCTCGATTTCTAAGGGGATTTTTGCATTTCGCACATTATTCTG-----GCCCCTCCTTCTCTCTCTCACCCCT------TTTTACAG--TTGATCATCATTTGGTGTGCAACAGAAACATATGG
i canFam3.chr31             C 0 I 5

a score=285213.000000
s hg38.chr21_GL383581v2_alt     10128 85 +    116689 AGAAAGAGGGCAAAGTC-CA-----CATCCTTTGTTATTTTTTGTTTACGTTGTTAAGTAGGTTAATTGAAGAGTAAGGTGAAGTT-ATTGG
s panTro4.chr21              19513774 85 +  32799110 AGAAAGAGGGCAAAGTC-CA-----CATCCTTTGTTATTTTTTGTTTACGTTGTTAAGTAGGTTAATTGAAGAGTAAGGTGAAGTT-ATTGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34409739 85 +  48394510 AGAAAGAGGGCAAAGTC-CA-----CATCCTTTGTTATTTTTTGTTTACGTTGTTAAGTAGGTTAATTGAAGAGTAAGGTGAAGTT-ATTGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19940546 85 +  32716333 AGAAAGAGGGCAAAGTC-CA-----CATCCTTTGTTATTTTTTGTTTACGTTGTTAAGTAGGTTAATTGAAGAGTAAGGTGAAGTT-ATTGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185107616 85 - 198365852 AGAAAGAGGGCAAAGTC-CA-----CATCCTATGTTATTTTTTGTTTACATTGTTAAGTAGATTAATTGAAGAGTAAGGGGAAGTT-TTTGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178948996 85 - 192294377 AGAAAGAGGGCAAAGTC-CA-----CATCCTATGTTATTTTTTGTTTACATTGTTAAGTAGATTAATTGAAGAGTAAGGGGAAGTT-TTTGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167329307 85 - 180432695 agaaaGAGGGCAAAGTC-CA-----CATcctatgttattttttgtttacattgTTAAGTAGATGAATTGAAGAGTAAGGGGAAGTT-TTTGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31606224 78 -  90373283 AGAAAGAGGGCAAAGTC-CA-----C-------GTTATTTTTTGTTTACATTGTTAAGTAGATTAATTGAAGAGTAAGGTGAAGTT-TTTGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37411635 85 +  50472720 AGAAAGAGGTCAAAGTC-CA-----CATCCTTTGTTATTTTTTGTTTACATTGTTAAGTAGGTTAATTAAAGAGTAAGGTAAAGTT-ATTGG
i calJac3.chr21             I 313 C 0
s mm10.chr16                 91555594 90 +  98207768 TAAGAAACTGCTCAGTC-AAACGgttttgttttgttttgttttgttttCTTGGTCACATATGTTAGTTGAAGATCAAGCTGAAAGC-ACTGG
i mm10.chr16                I 4 I 609
s canFam3.chr31              28030979 84 +  39895921 AGAAGAAAGGCAAACTCTTA-----AGGCCTCAGTTGTTACGTGTTTACCTTGTTACACAGGTTAAGTTAC---TAAGTTAAAAATGATTGG
i canFam3.chr31             I 5 C 0

a score=620204.000000
s hg38.chr21_GL383581v2_alt     10213 195 +    116689 CTAAGTCATTTTGTACTATTTGGTAAACCAAATGTAAAGACATGATGATGTCCAGTGCTTGTGAGATGGGACTG--GTTCATATGTGTTCACCTGATGCTGTTTGCAGAATCAATTAGCATAGCCCTTTCAAAGAGGAAT--TCTACCAGACATTTGAAGTCATGGAAATGTCCATAGTAGTTTTCCAA--------------------tgtgtgtgtg
s panTro4.chr21              19513859 197 +  32799110 CTAAGTCATTTTGTACTATTTGGTAAACCAAATGTAAAGACATGATGATGTCCAGTGCTTGTGAGATGGGACTG--GTTCATATGTGTCCACCTGATGCTGTTTGCAGAATCAATTAGCATAGCCCTTTCAAAGAGGAAT--TCTACCAGACATTTGAAGTCATGGAAATGTCCATAGTAGTTTTCCAA------------------tgtgtgtgtgtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34409824 203 +  48394510 CTAAGTCATTTTGTACTATTTGGTAAACCAAATGTAAAGACATGATGATGTCCAGTCCTTGTGAGATGGGATTG--GTTCACATGTGTTCACCTGATGCTGTTTGCAGAATCAATTAGCATAGCCCTTTCAAAGAGGAAT--TCTACCAGACATTTGAAGTCATGGAAATGTCCATAGTAGTTTTCCtg------------tgtgtgtgtgtgtgtgtg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19940631 215 +  32716333 CTAAGTCATTTTGTACTATTCGGTAAACCAAATGTAAAGACATGATGATGTCCAGTGCTTGTGAGATGGGACTG--GTTCATACGTGTTCACCTGATGCTGTTTGCAGAATCAATTAGCATAGCCCATTCAAAGAGGAAT--TCTACCAGACATTTGAAGTCATGGAAATGTCCATAGTAGTTTTCCAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185107701 195 - 198365852 CTAAGCCATTTTGTACTATTCGGTAAACCAAATGTAAAGACGTGATGATGTCCAGTGCCTGGGAGATGGGATTG--GTTCATATGTGTTCACCTGATGCTGTTTGCAGTATCAATTAGCATAGCCCTTTCAGAGAGTAAT--TCTACCAGACATTTGAAGTCGTGGAAATGTCCATAGTAGTTTTCCAA--------------------tgtgtgtgtg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949081 195 - 192294377 CTAAGCCATTTTGTACTATTCGGTAAACCAAATGTAAAGACATGATGATGTCCAGTGCCTGGGAGATGGGATTG--GTTCATATGTGTTCACCTGATGCTGTTTACAGTATCAATTAGCATAGCCCTTTCAGAGAGTAAT--TCTACCAGACATTTGAAGTCGTGGAAATGTCCATAGTAGTTTTCCAA--------------------tgtgtgtgtg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167329392 195 - 180432695 CTAAGCCATTTTGTACTATTCGGTAAACCAAATGTAAAGACATGATGATGTCCAATGCCTGGGAGATGGGATTG--GTTCGTATGTGTTCACCTGATGCTGTTTGCAGTATCAATTAGCATAGCCCTTTCAGAGAgtaat--tctaccagacatttgaAGTCGTGGAAATGTCCATAGTAGTTttccaa--------------------tgtgtgtgtg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31606302 195 -  90373283 CTAAGCCATTTTGTACTATTAGGTAAACCAAATGTAAAGACGTGATGATGTCCAGTGCTTGGGAGATGGGATTG--GTTCATATGTGTTCACCTGATGCTGTTTGCAGTATCAATTAGCATAGCCCTTTCAGAGAGTAAT--TCTACCAGACATTTGAAGTCATGGAAATGTCCATAGTAGTTTTCCAA--------------------tgtgtgtgtg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37411720 197 +  50472720 CTAAGTCATTTTGTGCTGTTCAATAAACCAAATGTAAACACATGATGATGTCCAGTGCTTGTGAGATGGGATTGGTGTTCACCTGTATTCACCTGATGCTGTTTGCAGAATCAATCAGCATAGTCATTTCAGAGAGTAAT--TCTACCAGCCATTTGAAGTTACGGAAATGTCCATAGTAGCTTTCTTG--------------------TGTGTGTGTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28031063 187 +  39895921 CTAAGTCGTTTTATTTTACCAGTTAAACAAAATTTAAAGAAATGGTAATGCTCAGTGCTTGGGAGC---GCATG--GTTGATGG------AGATGGTGCTGGATG-AGGATTAGTTAACACGGCTGCGCTACAGCAGAGTCATCTGCTGTACATCCAGAGTCACAGAAATGCCCACGTCACTTTTCCCC--------------------TACGCAGGTG
i canFam3.chr31             C 0 I 195
e mm10.chr16                 91555684 609 +  98207768 I

a score=923650.000000
s hg38.chr21_GL383581v2_alt     10408 336 +    116689 tgtgtgcacgtg------------------tgcatgtgtgtctgtttg---ttgttgttgttttgaaacagagtttccctctatcgcccaggctggagggcaatggcatgatctcagctcactgcaacttccacctcctgggttcaagtgattctcatgcctcctgagtagctgggactacaggcatgagctaccatggctggctaataggtatatttttagtagagatggggttttgccatgttggccaggctggtctcaaattcctggccccatcctcaagtgatttgcccgcctgggcctcccaaagtgctgggattgcaggcatgagccaccgtgcccagccTTCATAGTAGT
s panTro4.chr21              19514056 336 +  32799110 tgtgtgcgcgtg------------------tgcatgtgtgtCTGtttg---ttgttgttgttttgaaacagagtttccctctatcgcccaggctggagggcaacggcatgatctcagctcactgcaacttccacctcctgggttcaagtgattctcatgcctcctgagtagctgggactacaggcatgagctatcacggctggctaataggtatatttttagtagagatggggttttgccatgttggccaggctggtctcaaatgcctggccccatcctcaagtgatctgcccgcctgggcctcccaaagtgctgggattgcaggcgtgagccaccgtgcccagccTTCATAGTAGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34410027 333 +  48394510 tgtgtgcacgtg------------------cgtgtgtgtgtctgt------ttgtTGttgttttgaaacagagtttccctctatcgcccaggctggagggcaatggcatgatctcagctcactgcaacttccacctcccgggttcaagtgattcttaagcctcctgagtagctgggactacaggcaggaactaccacggctggctaataggtatatttttagtagagatggggttttgccatgttggccaggctggtctcaaattcctggcctcaacctcaagtgatctgcctgtctgggcctcccaaagtgctgggattgtaggcatgagccaccgtgcccagccTTCATAGTAGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19940846 333 +  32716333 tgtgCGCACGCG------------------TGCACGCGTGTGCATGTGTGTCTGttgttgttttgaaacagagtttccctccgtcgcctaggctggagtgcaatggcatgatctcagttcactgcaacttccacctcctgggttcaagtgattctcatgcctcctgagtagctgggactacaggcatgagctaccacggctggctaataggtatatttttagtagagatggggttttgccacgttggccaggctggtctcaaattcctgg------cctcaagtgatctgcctgcctgggcctcccaaagtgctgggattgcaggcgtgagccactgcgcccagccTTCATAGTAGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185107896 324 - 198365852 tgtgtgtgtgtg------------------tgtctgtctgtctgtc---------tgtTGttttgaaacagagtttccctctatcgcccagactggagtgcaatggcatgatctcagctcactgcaacttccgcctcctgggttccagtgattctcatgcctcatgagtagctgagactacaggcatgagctcccacggctggctaatacgtatgtttttagtagagatggggttttgccatgttggccaggcttatctcaaattcctgg------cctcaagtgatctgcccgcctgggcctcccaaagtgctgggattgcaggtgtgagccaccatgcccagccTTCATAGTAGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949276 324 - 192294377 tgtgtgtgtgtg------------------tgtgtgtCTGTCTGTC---------TGttgttttgaaacagagtttccctctatcgcccagactggagtgcaatggcatgatctcagctcactgcaacttccgcctcctgggttccagtgattctcatgcctcctgagtagctgagactacaggcatgagctaccacggctggctaatacgtatgtttttagtagagatggggttttgccatgttggccaggcttatctcaaattcctgg------cctcaagtgatctgcccgcctgggcctcccaaagtgctgggattgcaggtgtgagccaccatgcccagccTTCATAGTAGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167329587 345 - 180432695 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctg------ttgttgttttgaaacagagtttccctctatcgcccagactggagtgcaatggcatgatctcagctcactgcaacttccacctcctgggttccagtgattctcatgcctcctgagtagctgagactacaggcatgagctaccacggctggctaatacgtatatttttagtagagatggggtttggccatgttggccaggcttatctcaaattcctgg------cctcaagtgatctgcccgcctgggcctcccaaagtgctgggattgtaggtgtgagccgccatgcccagccttcatAGTAGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31606497 328 -  90373283 tgtgtgtgtgtg------------------tgtgtgtCTGTCTGTCTG---t--ttgttgttttgaaacagagtttccctctatcgcccaggctggagtgcaatggcatgatctcagctcactgcaacttccacctcctgggttcaagtgattctcatgccttctgagtagctgagactacaggcatgagctaccacggctggctaatacgtatatttttagtagagatggggttttgccatgttggccaggctcgtctcaaattcctgg------cctcaagtgatctgcccgcctgggcctcccaaagtgctgggattgcaggtgtgagccaccatgcccagccTTCATAGTAGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37411917 304 +  50472720 TGT---------------------------CA-------------------ttgttgttgttttgagacagagtctccctgtgtcgtccaggctggagtgcagcagcacagtctcaactcactacaacctccacctcttggattcaagtgattctcatgcctcccaagtagttgggactacaggcatgaactaccat-gctggctaatgtgtatatttttagtagaaatggggttttgccatgttggccaggctggtctcaaatttctgg------cctcaaatgatctgcccacctgggcctcccaaagtgccgggattgcaggcgtgagccaccgcacccaggccTCATCGTAGT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031250 195 +  39895921 I

a score=704353.000000
s hg38.chr21_GL383581v2_alt     10744 224 +    116689 TTTATCCTACACAGATAATTCAACCCC-CCATCAAAAAAA----AGAGAGACAAAAAC-----TATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACCAATTTTAGCCTGCTAACTTACGCTTGA-----ACACTAAACCACAGACAGCCAATAGAAAGGATAATTAGATGTCATCTGGTAGAAATTGCAACTCTGTAAACTTTGGCATGTATTT
s panTro4.chr21              19514392 223 +  32799110 TTTATCCTACACAGATAATTCAA-CCC-CCATCAAAAAAA----AGAGAGACAAAAAC-----TATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACCAATTTTAGCCTGCTAACTTACGCTTGA-----ACACTAAACCACAGACAGCCAATAGAAAGGATAATTAGATGTCATCTGGTAGAAATTGCAACTCTGTAAACTTTGGCATGTATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34410360 224 +  48394510 TTTATCCTACACAGATAATTCAACTCC-GTATCAAAAAAA----AGAGAGACAAAAAC-----TATAATCATGAAGAGATACATGTAAGTGTATATTCATATCCGTCAGTAGGAAAGTGACAAATTGTAGGCTGCTAACTTACCCTTGA-----ACACTAAACCACAGACAGCCACTAGAAAGGATAATTAGATGTCATCTGGTAGAAATTGCAACTCTGTCAACTTTGGCATGTATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19941179 224 +  32716333 TTTATCCTACACAGATAATTCAACCCC-CTATCAAAAAAA----AGAGAGACAAAAAC-----TATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACAAATTGTAGCCTGCTTACTTACGCTTGA-----ACACTAAACCACAGACAGCCACTAGAAGGGATAATTAGATGTCATCTGGTAGAAATTGCAACTCTGTAAACTTTGGCATGTATTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185108220 223 - 198365852 TTTATCCTACACAGATAATTCAA-CCC-CCATCAAAAAAA----AGAGAGACAAAAAC-----TATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACAAATTGTAGCCTGCTAACTTGCGCTTGA-----ACACTAAACCACAGACAGCCACTAGAAAGGATAATTAGATGTCATCTGTCAGAAATTGCAACTCCGTAAACTTTGGCATGTATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949600 223 - 192294377 TTTATCCTACACAGATAATTCAA-CCC-CCATCAAAAAAA----AGAGAGACAAAAAC-----TATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACAAATTGTAGCCTGCTAACTTGCGCTTGA-----ACACTAAACCACAGACAGCCACTAGAAAGGATAATTAGATGTCATCTGTCAGAAATTGCAACTCCGTAAACTTTGGCATGTATTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167329932 223 - 180432695 TTTATCCTACACAGATAATTCAA-CCC-ccatcaaaaaaa----agagagacaaaaac-----tATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACAAATTGTAGCCTGCTAACTTACGCTTGA-----ACACTAAACCACAGACAGCCACTAGAAAGGATAATTAAATGTCATCTGTTAGAAATTGCAACTCTGTAAACTTTggcatgtattt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31606825 220 -  90373283 TTTATCCTACACAGATAATTCAA-CCCTCCATCAAAAAAA--------AGACAAAAAC-----TATAATCATGAAGAGATACATGGAAGTGTATATTCATATCCATCAGTAGGAAAGTGACAAATTGTAGCCTGCTAACTTACACTTGA-----ACACTAAACCACAGATAGCCACTAGAAAGGATAATTAGATGTCATCTGTTAGAAATTGCAACTACGTAAACTTTGGCATGTATGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37412221 228 +  50472720 TTTACCCTACACAGATAATTCAA-CCC-TCGGCAAAAAAAAA--AGAGAAACCAAAAC-----TACAATCATGAAGAGATACAGGGAAGCGTATATTCATATCCCCTGGTAGGAAGATGGCAGATTGTAGCCCGCTG--TTACACTTGGCAGTTACACTAAACCACAGGCAGCCACTAGAAAGCATAATTATATGTCATCTGGTAGAAGCTGCAACTCCATGAACTTTGGTATGTATTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28031445 219 +  39895921 tctctctcaaataaataa---aa-tct-ttaaagaaaGCAAAGCAAAGAAAATAAAACCCCCTCATATTCATGAAGATATACCTTGAAGCCTTCAT---TGTCCATCAGCAGAAAAATGCCAAATCGTGTCATGTTAGCTAGTAGTTGA-----ACATT-------AGGCAACTACTAAAAAGGATCATTGTGTGTCATCCGGTAGCAGTGGCAACCGTATAAAATTTGGACTGTATCT
i canFam3.chr31             I 195 I 73
e mm10.chr16                 91555684 609 +  98207768 I

a score=72454.000000
s hg38.chr21_GL383581v2_alt     10968 29 +    116689 GTATTTTTTATTTCTTATTTTTGTTACTT
s panTro4.chr21              19514615 29 +  32799110 Gtattttttatttcttatttttgttactt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34410584 29 +  48394510 GTATTTTTTATTTCTTATTTTTGTTACTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19941403 25 +  32716333 GTATTTTTTA----TTATTTTTGTTACTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185108443 29 - 198365852 GTATTTGTTATTTCTTATTTTTGTTACtt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949823 29 - 192294377 GTATTTGTTATTTCTTATTTTTGTTACTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330155 29 - 180432695 gtattttttatttcttatgtttgttactt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607045 29 -  90373283 Gtattttttatttcttatttttgttactt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37412449 29 +  50472720 CGtttttttatttcttttctttttttttt
i calJac3.chr21             C 0 I 631
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664 73 +  39895921 I

a score=2548.000000
s hg38.chr21_GL383581v2_alt     10997 1 +    116689 A
s panTro4.chr21              19514644 1 +  32799110 a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34410613 1 +  48394510 A
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19941428 1 +  32716333 A
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185108472 1 - 198365852 a
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949852 1 - 192294377 A
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330184 1 - 180432695 a
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607074 1 -  90373283 a
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664 73 +  39895921 I
e calJac3.chr21              37412478 631 +  50472720 I

a score=267735.000000
s hg38.chr21_GL383581v2_alt     10998 97 +    116689 AAAAAAT--TTTTTATTCACTTTTATACTGAAAAGTTGCAAGTGGTATGTATTTATTGTCAAGAATAGAAAGGGGCCGATCATGGTGGCTCACACCTGT
s panTro4.chr21              19514645 97 +  32799110 aaaaatt--tttttattCACTTTTATACTGAAAAGTTGCAAGTGGTATGTATTTATTGTCAAGAATAGAAAGGGGCCGATCATGGTGGCTCACACCTGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34410614 97 +  48394510 AAAAAAT--GTTTTATTCACTTTTATACTGAAAAGTTGCAAGTGGTGTGTATTTATTGTCAAGAATAGAAAGGGGCTGATCATGGTGGCTCACACCTGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19941429 97 +  32716333 AAAAAAT--TTTTTATTCACTTTCATACTGAAAAGTTGCAAGTGGTGTGTATTTGTTGTCAAGAATAGAAAGGGGCTGATCACGGTGGCTCACACCTGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185108473 98 - 198365852 aaaaaattttttttatttaCTTT-ATACTGAAAAGTTGCAAGTGATGTGTATTTATTGTCAAGAATAGAAAGGGGTCGATCACGGTGGCTTACACCTGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949853 98 - 192294377 AAAAAATTTTTTTAATTTACTTT-ATACTGAAAAGTTGCAAGTGATGTGTATTTATTGTCAAGAATAGAAAGGGGTCGATCACGGTGGCTTACACCTGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330185 94 - 180432695 aaaaa----tttttatttacttt-atactGAAAAGTTGCAAGTGATGTGTATTTATTGTCCAGAATAGAAAGGGGCCGatcacggtggcttacacctgt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607075 97 -  90373283 aaaaaatt-tttttatttacttt-atACTGAAAAGTTGCAAGTGATGTGTATTTATTGTCAAGAATAGAAAGGGGCCGATCACAGTGACTTACACCTGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37413109 96 +  50472720 AAGTAAA--TTTTTATTCACTTT-ATACTGAAAAGTTGCAAGTGGTATGTATTTATTGTCAAGAAGAGAAAGGGGCCCATCACAGTGGCTCCCACCTAT
i calJac3.chr21             I 631 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664 73 +  39895921 I

a score=272828.000000
s hg38.chr21_GL383581v2_alt     11095 114 +    116689 AAAAGAATAGAAAAGTAggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaagacgggcggatcacgcggtgaggagatcgagaccatcctggctaaca
s panTro4.chr21              19514742 114 +  32799110 AAAAGAATAGAAAAGTAggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaagacgggcggatcacgaggtgaggagatcgagaccatcctggctaaca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34410711 114 +  48394510 AAAAGAATAGAAAAGTAggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccgagatgggtggatcacgaggtgaggagatcaagaccatcctggctaaca
i ponAbe2.chr21             C 0 M 477
s nomLeu3.chr25              19941526 114 +  32716333 AAAAGAATAGAAAAGTAggccagacacggtgcctcacgcctataatcccagcactttgggaggccgagacgggtggatcacgaggtgaggagatcgagaccattctggctaaca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185108571 114 - 198365852 AGAAGAATAGAAAAGTAggtcaggcgcagtggctcacgcctataatcccaacactttgggaggccgagacgggtggatcatgaggtcaggagatcgagaccatcctgactaaca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178949951 114 - 192294377 AGAAGAATAGAAAAGTAggtcaggcgcagtggctcacgcctataatcccaacactttgggaggccgagacgggtggatcatgaggtcaggagatcgagaccatcctgactaaca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330279 114 - 180432695 aaaagaatagaaaagtaggtcaggcgcagtggctcacgcctgtaatcccaacactttgggaggccgagacgggcggatcatgaggtcaggagatcgagaccatcctgactaata
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607172 114 -  90373283 AAAAGAATAGAAAAGTAggtcaggcgcagtggctcacgcctgtaatcccaacactttgggaggccgagacaggcggatcacgaggtcaggagatcgagaccatcctgactaaca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664  73 +  39895921 I
e calJac3.chr21              37413205   0 +  50472720 C

a score=338219.000000
s hg38.chr21_GL383581v2_alt     11209 190 +    116689 cgctgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgaaccgagatcgtgccactgcactccaggctgggcgacagagcgagactccatctcaaaaaa
s panTro4.chr21              19514856 187 +  32799110 cgctgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgaaccgagatcgtgccactgcactccaggctgggcgacagagcgagactccatctc---aaa
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19941640 189 +  32716333 cggtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggcggacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggaccttgcagtgaaccgagatcatgccactgcactcctggaagggcgacagagtgagactccatctc-aaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185108685 189 - 198365852 cggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgaactgagatcgcgccactgcactccaggctgggcgacagagcgagactgtgtctc-aaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178950065 189 - 192294377 cggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgaactgagatcgcgccactgcactccaggctgggcgacagagcgagactgtgtctc-aaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330393 189 - 180432695 cggtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatgccatgaaccagggaggcggagcttgcagtgaaccgagattgcgccactgcactccaggctgggcgacagagcaagactctgtctc-aaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607286 189 -  90373283 cggtgaaaccccatctctactaaaaatacaaaaaattggccgggtgtggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgtactccagcctgggcgacagagcgagactctgtctc-aaaaa
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664  73 +  39895921 I
e ponAbe2.chr21              34410825 477 +  48394510 M
e calJac3.chr21              37413205   0 +  50472720 C

a score=131959.000000
s hg38.chr21_GL383581v2_alt     11399 101 +    116689 aaaa------aaaaaagaatag------aaaaGTAATGTGGAAAAATGACAGGCAATTGATTTGTTAGAGGAGTAGGTTTCCAGGTAACTTGtttttctttttctttttcttt
s panTro4.chr21              19515043  94 +  32799110 aaaa------aaaaaagaatag------aaaaGTAATGTGGAAAAATGACAGGCAATTGATTTGTTAGAGGAGTAGGTTTCCAGGTAACTTGtttttcttttt-------ttt
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19941829 107 +  32716333 aaat------aaaataaaataaaaaaataaaAGTAATGGGGAAAAATGACAGGCAATTGATTTTTTAGAGGAGTAGGTTTCCAGGTAACtttttttttttttttttttttttt
i nomLeu3.chr25             C 0 I 1114
s rheMac3.chr3              185108874  71 - 198365852 aaa-------aaaaaaaaagag------aaaaGTAATGTGGAAAAATGACAGGCAATTGATTTGTTAGAAGAGTAGGTTTCCAG-----------------------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178950254  78 - 192294377 aaaaaaagagaaaaaagaagag------aaaAGTAATGTGGGAAAATGACAGGCAATTGATTTGTTAGAAGAGTAGGTTTCCAG-----------------------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330582  78 - 180432695 aaaaaaaaagaaagaagaagag------aaaagtaatGTGGAAAAATGACAGGCAATTGATTTGTTAGAGGAGTAGGTTTccag-----------------------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607475  69 -  90373283 g---------aaaaaagaagag------aaaaGTAATGTGGAAAAATGACAGGCAATTGATTTGTTAGAGGAGTAGGTTTCCAG-----------------------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37413205  81 +  50472720 AAAA------AACAAAACAAAA------AAAAGTAATGGGGAAAAATTGCAGGCAATTGATTTGTTAGAGGAGTAGGTTTCTAGATAACttct--------------------
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664  73 +  39895921 I
e ponAbe2.chr21              34410825 477 +  48394510 M

a score=321692.000000
s hg38.chr21_GL383581v2_alt     11500 213 +    116689 ttttttttttttttgagacaaagtctccgtcacccaggctgaaatgcagtggcacgatcttggctcact-ggacctccgcctcccaggttcaagcaattcttatacctcagccttctgtgtagctgggattacaagtgtgc--------acca-ccccacccggttCAGATAACttc-------------------------------------------ttttt---tttttttctgagacaaggtctcactctgccccccaggctgg
s panTro4.chr21              19515137 226 +  32799110 ttttttttttttttgagacaaagtctctg-cactcaggctgaaatgcagtggcacgatcttggctcact-cgacctccacctcccaggttcaagcaattcttatacctcagccttctgtgtagctgggattacaagtgtgc--------acca-ccccacccggttCAGATAACTTCtttttttt-----------------------------ttttttttttt---tttttttttgagacaaggtctcactctgtcccccaggctgg
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185108945 225 - 198365852 ------ttttttttgagacaaagtctctgttgcccaggctgtagtggagcggcacggtcttggctgactacaaccttcacctcccaggttcaagcaattctcatacctcagccttctgtgtggctgggattacaagtgtgcgtgc----gcca-ccccacccagttCAGATAACttcttattctc------------------------------tctttttttt---tttttttttgagatgaggtctcattctgtcccccaggctgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178950332 225 - 192294377 ------ttgtttttgagacaaagtctctgttgcccaggctgtagtgcagcggcacggtcttggctgactacaaccttcacctcccaggttcaagcaattctcatacctcagccttctgtgtggctgggattacaagtgtgcgtgc----gcca-ccccacccagttCAGATAACttcttattctc------------------------------tttttttttt---tttttttttgagatgaggtctcattctgtcccccaggctgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330660 225 - 180432695 ------tt-tttttgagacaaagtctctgttgcctaggctgtagtgcagtggcacgatcttggctgactgcaaccttcacctcccaggttcaagcaattcccatacctcagccttctgtgtagctgggattacaagtgtacaagctgggatta--------cagttcagATAacttcttattctc--------------------------tttttttttttttt---tttttttttgagaccaggtctcattctgtcccccaggctgg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607544 219 -  90373283 ------ttttttttgagacaaagtctctgttgcccaggctgtagtgcagtggcacgatcttggctgactacaaccttcacctcccaggttcaagcaattctcatacctcagccttctgtgtagctgggattacaagtgtgc--------gccaccCCCACCCAGTTCAGATAACttcttattctc---------------------------------ttttttt---tttttttttgagacaaggtctcattctgtcccccaggctgg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37413286 260 +  50472720 ttttttttttctttgagacaaagtctctgtcgcccaggctggagtacggtggcccaatctcagcttactgtaacctccacctcccaggttcaagcgattctcatgcctcagccttctgtgtagctaggattgcaagtgtgt--------gcca-ccctatccggttCAGATAACTACTTCTTATGCCACCCTACCCGGTTCAGATAACTACTTCTTATGCtttttgggttttttttttagacaaggtctcactctgtcccccaggctgt
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664  73 +  39895921 I
e ponAbe2.chr21              34410825 477 +  48394510 M
e nomLeu3.chr25              19941936 1114 +  32716333 I

a score=586880.000000
s hg38.chr21_GL383581v2_alt     11713 248 +    116689 agtgcagt-ggcatgatcatggctcaatgcagccacaatttcct-ggctcaagagatcctcctacttcagcctcccaagtagctgggactatgggcgcacactgctgtacccagctaatttttaattttttgaagagatggggttttgccatgttgcccaggctggcctcgaactcctgggctcaagtgatccacccacctcaacctcccaaagtgctgggattacag-acatgagccatcacacTGGCGT
s panTro4.chr21              19515363 248 +  32799110 agtgcagt-ggcatgatcatggctcaatgcagcctcaatttcct-ggctcaagagatcctcctacttcagcctcccaagtagctgggactatgggcgcacaccactgtacccagctaatttttaattttttgaagagatggggttttgccatgttgcccaggctggcctcgaactcctgggctcaagtgatccacccacctcaacctcccaaagtgctgggattacag-gcatgagccatcacacTGGCCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34411313 249 +  48394510 agtgcagt-ggcatgatcatggctcaatgcagcctcaacttcctgggctcaagagatcctcccacttcagcctcccgagtagctgggactgtgggcgcacaccactgtacccagctaatttttaattttttgaagagatggggttttgccatgttgcccaggctggcctcgaactcctgggctcaagtgatccacccacctcaacctcccaaagtgctgggattacag-gcatgagccatcacaccggccT
i ponAbe2.chr21             M 477 C 0
s rheMac3.chr3              185109170 249 - 198365852 agtgcagt-ggcatgatcatggctcaatgcagactcaacttcctgagctcaagagatcctcccacttcagcctgccgagtagctgggactatgggcgcacgccactgtacccagctaatttttaattttttgaagagatggagtttcgtcatgttgcccaggctggcctcgaactcctgggctcaagtgatctacccacctcaacctcccaaagtgctgggattacag-gaatgagccatcacATTGGCCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178950557 249 - 192294377 agtgcagt-ggcatgatcatggctcaatgcagcctcaacttcctgagctcaagagatcctcccacttcagcctgccgagtagctgggactatgggcgcacgccactgtacccagctaatttttaattttttgaagagatggagtttcgtcatgttgcccaggctggcctcgaactcctgggctcaagtgatctacccacctcaacctcccaaagtgctgggattacag-gaatgagccatcacATTGGCCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167330885 249 - 180432695 agtgcagt-ggcatgatcatggctcaatgcagcctcaacttcctgagctcaagagatcctcccacttcagcctcccgagtagctgggactatgggcgcacgccactgtacccagctaatttttaattttttgaagagatggagttccgtcatgttgaccaggctagcctcaaactcctgggctcaagtgatccacccacctcaacctcccaaagtgctgggattacag-gaatgagccatcacCTTGGCCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31607763 250 -  90373283 agtgcagtgggcatgatcatggctcaatgcagcctcaacttcctgagctcaagagatcctcccacttcagcctcctgagtagctgggactatgggcgcacgccactgtacccagctaatttttaattttttgaagagatggagtttcgtcatgttgcccaggctggcctcgaactcctgggctcaagtgatccacccacctcaacctcccaaagtgctgggattacag-gaatgagccatcacATTGGCCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37413546 248 +  50472720 agtacaat-ggcatgatcatggctcagtgcagcctcaacttcctgggctcaagag--cctcccactttagcctcccaagtaactgggactaaaggcatatgccactgcacccagctaattttaaattttttgaagaggtgggatttcaccatgttgcccaggctggccttgaactcttgggctcaagtggtctgcccacctcaacctcccaaaatgctggaattagagaggctgagccatcacacTGGCCT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e canFam3.chr31              28031664  73 +  39895921 I
e nomLeu3.chr25              19941936 1114 +  32716333 I

a score=62122.000000
s hg38.chr21_GL383581v2_alt     11961 23 +    116689 TTCTTATTTGTTTTTAAATGTCC
s panTro4.chr21              19515611 23 +  32799110 TTCTTATTTGTTTTTAAATGTCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34411562 23 +  48394510 TTCTTATTCGTTTTTAAATGTCC
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185109419 23 - 198365852 TTCTTATTTGTTTTTAAATGTCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178950806 23 - 192294377 TTCTTATTTGTTTTTAAATGTCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167331134 23 - 180432695 TTCTTATTCGTTTTTAAATGTCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608013 23 -  90373283 TTCTTATTCGTTTTTAAATGTCC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37413794 23 +  50472720 TCCTTATTCATTTTTAAATGTCT
i calJac3.chr21             C 0 I 117
s canFam3.chr31              28031737 23 +  39895921 TCCTTTCTCATCTTGGAATGTCC
i canFam3.chr31             I 73 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e nomLeu3.chr25              19941936 1114 +  32716333 I

a score=478735.000000
s hg38.chr21_GL383581v2_alt     11984 197 +    116689 GTTGTAACAGTATTTGCTTAATAGAAACAGGTGCTAAACTGAGGTTTGAGAGTTATCTCTAAATCACATTGATCTGTTCCTCCAGTAGTTATAAATTACGAACATTAAGTTACCTGTAAT-----------------------------------------------TAATGGAGCAATCCACcagagcaggctacacaatttgcaagacccagtgcaaaatgaaaat-------------gtgagaccctttattt
s panTro4.chr21              19515634 197 +  32799110 GTTGTAACAGTATTTGCTTAATAGAAACAGGTGCTAAACTGAGGTTTGAGAGTTATCTCTAAATCACATTGATCTGTTCCTCCAGTAGTTATAAATTACGAACATTAAGTTACCTGTAAT-----------------------------------------------TAATGGAGCAATTCACcagagcaggctacacaatttgcaagacccagtgcaaaatgaaaat-------------gtgagaccctttattt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34411585 197 +  48394510 GTTGTAACAGTAGTTGCTTAATAGAAACAGGTGCTAAACTGAGGTTTGAGAGTTATCTCTAAATCACATTGATCTGTTCCTCCAGTAGTTCTAAATTACGAACATTAAGTCACCTGTAAT-----------------------------------------------TAATGGAGCGATCCACcagaacaggctacacaatttgcaagacccagtgcaaaatgaaaat-------------gtgagactctttattt
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185109442 196 - 198365852 GTTATAACAGTATTTGCTTAATAGAAACAGGTGCTAAAGTGAGGTTTGAGAGTTATCTCTAAATCACATTTATCTGTTCTTCCAGTAGTTATAAATAACCAACATTAAGTCACCTGTAAT-----------------------------------------------TAATGGAGCAGTCCACcagaacaggctacacaatttgcaaaacccagtgcaaaatgaaaat-------------gtgagaccc-ctattc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178950829 196 - 192294377 GTTATAACAGTATTTGCTTAATAGAAACAGGTGCTAAAGTGAGGTTTGAGAGTTATCTCTAAATCACATTTATCTGTTCTTCCAGTAGTTATAAATAACCAACATTAAGTCACCTGTAAT-----------------------------------------------TAATGGAGCAGTCCACcagaacaggctacacaatttgcaaaacccagtgcaaaatgaaaat-------------gtgagaccc-ctattt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167331157 196 - 180432695 GTTATAACAGTATTTGCTTAATAGAAACAGGTGCTAAAGTGAGGTTTGAGAGTTATCTCTAAATCACATTCATCTGTTCCTCCAGTAGTTATAAATAACCAACATTAAGTCACCTGTAAT-----------------------------------------------TAATGGAGCAATCCACCAGAACAGGCTACACAATTTGCAAaacccagtgcaaaatgaaaat-------------gtgagacCC-CTATTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608036 196 -  90373283 GTTATAACAGTAGTTGCTTAATAGAAACAGGTGCTAAAGTGAGGTTTGAGAGTTATCTCTAAATCACATTTATCTGTTCCTCCAGTAGTTATAAATAACCAACATTAAGTCACCTGTAAT-----------------------------------------------TAATGGAGCAATCCACcagaacaggctacacaatttgcaaaacccagtgcaaaattaaaat-------------gtgagaccc-ctattc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37413934 231 +  50472720 GTTGTAACAGTATTTGCTTAGTAGAAACGGGTGCTAAACTAAGGTCTGAGAGTTATCTCTATATCACATTTATCTGTTCCCTCAGTAGTTATAAATTACCAACATTAAGTCACATATAATAATGGAGCAATCCACCACAACAATTACCAACATTAAGTCACATATAATAATGGAGCAATCCACCATAacaggctacacaatttgctagcccc-------------aat-------------gtgagaccccttattc
i calJac3.chr21             I 117 C 0
s canFam3.chr31              28031760 195 +  39895921 ACTGTAACAATATTTGCTTGATAAAAATACACTCTGAACCAGAGTTTTGGGGTTATCTCTGAATTTTGGTTCTCTGTTCCTCAAGTAAGTA--------------CCAGTAATCTATAGT-----------------------------------------------ACGTGGACCAGTTCACAaggaccagctacataatttgtggggcccagtgcaaaatgaaaattgtagggggggtggggggggct-ttgctc
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e nomLeu3.chr25              19941936 1114 +  32716333 I

a score=738582.000000
s hg38.chr21_GL383581v2_alt     12181 268 +    116689 aaaaagtattaagaatttcaagatggcaaccgcagagcatcaaatgaagtgcctttctgagaac-gggcttgatgtgagcgcacaggtcacatgtc----aggaagttggccctACCCTCAGCATTCAGCAAACATTACACCCTAGAGCTAAACAAGA-------AGCTTGTTGTGAGAGTCACGGCTGATGTATTGACTTAGGCTTGAT-GCTGATTTATGGGC-------TCCTTGGCCTTGAACAAGGAAGTACGTTTACTGATTTTCAGAGGAGATGCTTCTAA
s panTro4.chr21              19515831 268 +  32799110 aaaaagtattaagaatttcaagatggcaaccgcagagcatcaaatgaagtgcctttctaagaac-gggcttgatgtgagcgcacaggtcacgtgtc----aggaagttggccctACCCTCAGCATTCAGCAAACATTATACCCTAGAGCTAAACAAGA-------AGCTTGTTGTGAGAGTCACGGCTGATGTATTGACTTAGCCTTGAC-GCTGATTTATGGGC-------TCCTTGGCCTTGAACAAGGAAGTACGTTTACTGGTTTTCAGAGGAGATGCTTCTAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34411782 267 +  48394510 aaaaagta--aagaatttcaagatggcaaccgcagagcatcaaatgaagtgcctttctaagaac-gggcttgatgtgagcgcacaggtcacatgtc----atgaagttggccctACCCTCAGCATTCAGCAAACATTATACCCTAGAGCTAAACAAGA-------AGCTTGTTGTGAGAGTCACAGCTGATGTATTGACTTAGCCTTGACAGCTGATTTATGGGC-------TCCTCAGCCTTGAACAAGGAAGTACATTTACTGGTTTTCAGAGGAGATGCTTCTAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19943050 275 +  32716333 aaaaaaaaaaaagaatttcaagatggcaaccgcagagcatcaaatgaagtgcctttctaagaac-gggcttgatgtgagcgcacaggtcacatgtc----atgaagttggccctACCCTCAGCATTCAGCAAACATTATACCCTAGAGCTAAACAAGA-------AGCTTATTGTGAGAGTCACGGCTGATGTATTCACTTAGCCTTGACAGCTGATTTATGGGCTTAGCATTCCTTGGCCTTGAACAAGGAAGTA-GTTTACTGGTTTTCAGAGGAGGTGCTTCTAA
i nomLeu3.chr25             I 1114 C 0
s rheMac3.chr3              185109638 259 - 198365852 aaagagcattaagaatttcaagatagctactgcagagcatcaaatgaagtgcctttctgagaacggggcttgatgtgagcgcacaggtcacatgtc----ATG---------------TCAGCATTCAGCAAACATAATACCCTAGGGCTAAACAAGA-------AAC---TTGTGAGAGTCACAGCCGATGTATTGACTTAGCCTTGACAGCTGATTGATGGGCTTAGCATTGCTTGGCCTTGAACAGGGAAGTATGTTTGCTGGTTTTCAGAGGAGATGCTTCTTA
i rheMac3.chr3              C 0 I 36
s macFas5.chr3              178951025 259 - 192294377 aaagagcattaagaatttcaagttagctactgcagagcatcaaatgaagtgcctttctgagaacggggcttgatgtgagcgcacaggtcacatgtc----ATG---------------TCAGCATTCAGCAAACATAATACCCTAGGGCTAAACAAGA-------AAC---TTGGGAGAGTCACAGCCGATGTATTGACTTAGCCTTGACAGCTGATTGATGGGCTTAGCATTGCTTGGCCTTGAACAGGGAAGTATGTTTGCTGGTTTTCAGAGGAGATGCTTCTAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167331353 259 - 180432695 AAAGAgcattaagaatttcaagatagcGACTACAGAGCATCAAATGAAGTGCCTTTCTGAGAACGGGGCTTGATGTGAGCGCACAGGTCACATGTC----ATG---------------TCAGCATTCAGCAAACATAATACCCTAGGGCTGAACAAGA-------AAC---TTGTGAGAGTCACGGCCGATGTATTGACTTAGCCTTGACAGCTGATTGATGGGCTTAGCATTGCTTGGCCTTGAACAGGGAAGTATGTTTGCTGGTTTTCAGAGGAGATGcttctaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608232 258 -  90373283 aaagagcattacgaatttcaagatagcaactgcaga-catcaaatgaagtgcctttctaagaacagggcttgatgtgagcgcacaggtcacatgtc----ATG---------------TCAGCATTCAGCAAACATAATACCCTAGGGCTAAACAAGA-------AAC---TTGTGAGAGTCACGGCCGATGTATTGACTTAGCCTTGATAGCTGATTGATGGGCTTAGCATTCCTTGGCCTTGAACAGGGAAGTATGTTTGCTGGTTTTCAGAGGAGATGCTTCTAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37414165 270 +  50472720 aaaaagtattaagaatttcaagatggccactgcagagcatcaaatgaagtgcctttgtaagaacgcagcttgatatgggtactcgggccagatgcc----atgaagctgg--cTACCCTCAGCATTCAGCCAAC-----ACTCTCGAGCTACACAAGA-------AGCTTGCTGGGAGAATCCCAGCTGATATAGTGACTTAGCCTTAACAGCTGATTTATGGGCTTAGCATTTCTTGGCCTTGAACAGGAAAGTATGTTTGCAGGTTTTAATAAGAGATACTTCTAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28031955 247 +  39895921 -agaattactgagaaattcaagatggtgacagcagagcatcaaactgagcacctct-tccgagcaggcctttgtgtccctgcatgggtcacacgcccacgaagaagctggccctAC--TCAGCATTGAGTAAACATGATATTGTGGAACCAAATAAGGTTTCAGTAAC------AGGAAATCACAGCTGATACACCGACT---------------------------GGCATTCCTTAGCCTTGAAGGGGGAAGTACATCTGTGGGTCT----AGGGAGCGCCAGGAA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I

a score=43596.000000
s hg38.chr21_GL383581v2_alt     12449 25 +    116689 AAATGGGATAAAACGTTATTGCA-TT
s panTro4.chr21              19516099 26 +  32799110 AAATAGGATAAAACGTTATTGCATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412049 26 +  48394510 AAATAGGATAAAACGTTACTGCATTT
i ponAbe2.chr21             C 0 I 2
s nomLeu3.chr25              19943325 26 +  32716333 AAATAGGATAAAATGTTATTGCATTA
i nomLeu3.chr25             C 0 I 4
s macFas5.chr3              178951284 25 - 192294377 AAATAGAAGAAAACGTTACTGCATT-
i macFas5.chr3              C 0 I 11
s papAnu2.chr3              167331612 25 - 180432695 aaatagaagaaaacgttattgcatt-
i papAnu2.chr3              C 0 I 7
s chlSab2.chr2               31608490 25 -  90373283 AAATAGAAGAAAACGTTATTGCATT-
i chlSab2.chr2              C 0 I 8
s calJac3.chr21              37414435 25 +  50472720 AAATAGGAGAAAATGTTATTGCATT-
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28032202 19 +  39895921 --ACAGTGGAAA----TATTCTAGT-
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I
e rheMac3.chr3              185109897 36 - 198365852 I

a score=152382.000000
s hg38.chr21_GL383581v2_alt     12474 52 +    116689 AAAAAAA------AAAACCTTTGATAGAGTTTCATTTGATAAACTAACCTGTTTCACT
s panTro4.chr21              19516125 52 +  32799110 TTTAAAA------AAAACCTTTGATAGAGTTTCATATGATAAACTAACCTGTTTCACT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412077 52 +  48394510 AAAAAAA------AAAAACTTTGATAGAGTTTCATATGATAAACTAACCTGTTTCACT
i ponAbe2.chr21             I 2 C 0
s nomLeu3.chr25              19943355 52 +  32716333 AAAAAAG------AAAACCTTTGATAGAGTTTCATATGATAAAATAACCTGTTTCACT
i nomLeu3.chr25             I 4 C 0
s rheMac3.chr3              185109933 52 - 198365852 aaaaaaa------aaaaCCTTTGATAGCGTTTCATATGATAAACTAACCTGTTTCACT
i rheMac3.chr3              I 36 C 0
s macFas5.chr3              178951320 52 - 192294377 aaacaaa------aaaaCCTTTGATAGCGTTTCATATGATAAACTAACCTGTTTCACT
i macFas5.chr3              I 11 C 0
s papAnu2.chr3              167331644 52 - 180432695 aaaaaaa------aaaacctttgataGCGTTTCATATGATAAACTAACCTGTTTCACT
i papAnu2.chr3              I 7 C 0
s chlSab2.chr2               31608523 52 -  90373283 AAAAACA------AAAACCTTTGATAGCGTTTCATATGATAAACTAACCTGTTTCACT
i chlSab2.chr2              I 8 C 0
s calJac3.chr21              37414460 51 +  50472720 -TTTTAA------AAAACCTTTGATAGAGTTTCATATGATAGACTAACGTGTTTCACT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28032221 55 +  39895921 AGAAATATTCCTTACAGCCTTTGACA--GTTTCCCATCCCAGATTAGCATGTTT-ACT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91555684 609 +  98207768 I

a score=167899.000000
s hg38.chr21_GL383581v2_alt     12526 43 +    116689 ----------------TTGTCTTCTTTTCAAAAAGCATTTTATAGATA-TTTTCTCAGGG
s panTro4.chr21              19516177 43 +  32799110 ----------------TTGTCTTCTTTTCAAAAAGCATTTTATAGATA-TTTTCTCAGGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412129 43 +  48394510 ----------------CTGTCTTCTTTTCAAAAAGCATTTTGTAGATA-TTTTCTCAGGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19943407 43 +  32716333 ----------------TTGTCTTCTTTTCAAAAAGCATTTTGTAGATA-TTTTCTCAGGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185109985 43 - 198365852 ----------------TTATCTTCTTTTCAAAAAGCATTTTGTAGATA-TTTTCTCAGGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178951372 43 - 192294377 ----------------TTATCTTCTTTTCAAAAAGCATTTTGTAGATA-TTTTCTCAGGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167331696 43 - 180432695 ----------------TTATCTtcttttcaaaaagcattttgtagata-ttttctcAGGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608575 43 -  90373283 ----------------TTATCTTCTTTTCAAAAAGCATTTTGTAGATA-TTTTCTCAGGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37414511 43 +  50472720 ----------------TTGTCTTTTTTTCAGAAAGCATTTTGTAGATA-TTTTCTCAGTG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91556293 43 +  98207768 ----------------TTTCTTTCTTCTTAGTAAACATTTTGTATCTT-TTTTATCAGGG
i mm10.chr16                I 609 C 0
s canFam3.chr31              28032276 60 +  39895921 TCATTTTCTTTTCTTTTTTCTTTTTTTTTGGAAGGCATTTTGGAGATAGTTTTTTCAAGG
i canFam3.chr31             C 0 C 0

a score=9261.000000
s hg38.chr21_GL383581v2_alt     12569 3 +    116689 ATA
s panTro4.chr21              19516220 3 +  32799110 ATA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412172 3 +  48394510 ATA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19943450 3 +  32716333 ATA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185110028 3 - 198365852 ATA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178951415 3 - 192294377 ATA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167331739 3 - 180432695 ATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608618 3 -  90373283 ATA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37414554 3 +  50472720 ATA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91556336 3 +  98207768 GTT
i mm10.chr16                C 0 C 0
e canFam3.chr31              28032336 0 +  39895921 C

a score=938650.000000
s hg38.chr21_GL383581v2_alt     12572 354 +    116689 AAGGTTGG-----Ttttattt---------------tttatttatttatttatttattttgagacagagtctcgctctgtcatccaggctggagtgcagtggcgtgatctcagctgactgcaactttcggctcattgcaacctgcggctcactgcagcctccgcctcgtgggttcaagcgattctcctgcctcagactcctgagtagctgggattacaggcacccaccactacgcccggctgatttttatatttttagtagagacagcttttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccgcccacct-agcctcccaaagtgctggaattataggtgtaagccatcacgcccagc
s panTro4.chr21              19516223 364 +  32799110 AAGGTTGG-----Ttttattttttattttta-----tttatttatttatttatttattttgagacagagtctcgctctgtcatccaggctggagtgcagtggcgtgatctcagctgactgcaactttcggctcactgcaacctgcggctcactgcagcctccgccttgtgggttcaagtgattctcctgcctcagactcctgagtagctgggattacaggcacccaccactacgcccggctgatttttatatttttggtagagacagcttttcaccatgttggccaggctggtctggaactcctgacctcaggtgatccgcccacct-agcctcccaaagtgctggaattataggtgtaagccgtcacgcccagc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412175 360 +  48394510 AAGGTTGG-----TTTTATtttttatt---------tttatttatttattcatttattttgagacagagtcttgctctgtcatccaggctggagtgcagtggcgtgatctcagctgactgcaactttcagctcactgcaacctccggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagactcctgagtagctgggattacaggcacccgccactacgcccggctgatttttatatttttagtagagacagcttttcaccatgttggccaggctggtcttgaattcctgacctcaggtgatccgcccacct-agccgcccaaagtgctggaattataggtgtaagccaccacgcccggc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19943453 357 +  32716333 AAGGTTGG-----TTTTAtttttt------------tatttttatttatttatttattttgagacagagtcttgctctgtcatccaggctggagtacagtggcgtgatctcagctcactgcaactttcggctcactgcaacctccagctcactgcaacctctacctcccgaattcaagcgattctcctgcctcagactcctgagtagctaggattacaggcaccagccactacgctcggctgatttttatatttttagtaaagacagcttttcaccatgttggccaggctggtctcgaactcctgaccttaggtgatccacccacct-agcctcccaaagtgctggaattacaggtatgagccaccacgcccggc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185110031 368 - 198365852 AAGTTTGGttttattttatttcttatttttttttaattaattaattaatttatttatttagagacagagt----ctctgtcatctaggctggagtgcagtggcgtgatctcagctcactgcaacttttggctcactgc-acctctggctcactgcaacctccacctcctgggttcaaacgattctcctgcctcagactcccgggtagctgagattacaggcacccgccaccacgcccggctgatttttacatttttagtagagacagagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcct-agcctcccaaagtgctgggattacaggcatgagccactgcgcctgg-
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178951418 368 - 192294377 AAGTTTGGTTTTATTTTATTTCTTATTTTTTTTTAATTAATTAATTAAtttatttatttagagacagagt----ctctgtcatccaggctggagtgcagtggcgtgatctcagctcactgcaacttttggctcactgc-acctctggctcactgcaacctccacctcctgggttcaaacgattctcctgcctcagactcccgggtagctgagattacaggcacccgccaccacgcccggctgatttttacatttttagtagagacagagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcct-agcctcccaaagtgctgggattacaggcatgagccactgcgcctgg-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167331742 359 - 180432695 AAGgttgg-----ttttatttcttatttttt-----taaattaattaattaatttatttagagacagagt----gtctgtcatccaggctggagtgcagtggcgtgatctcagctcgctgcaacttttggctcactgc-acctgtggctcactgcaacctccacctcccgggttcaaacgattctcctgcctcagactcccgggtagctgagattacaggcacccgccaccacgcccggctgatttttacatttttagtagagacagagtttcgccgtgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctgg-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608621 367 -  90373283 AAGGTTGGttttattttatttcttatttttt-taaattaattaattAAtttatttatttagagacagagt----ctctgtcatccaggctggagtgcagtggcgtgatctcagctcgctgcaacttttggctcactgc-acctgtggctcactgcaacctccacctcccgggttcaaacgattctcctgcctcagactcccgggtagctgagattacaggcacccgccaccacgcccggctgatttttacatttttagtagagacagagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcct-agcctcccaaagtgctgggattacaggcgtgagccactgcgcctgg-
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37414557 322 +  50472720 GAGGTTGG-----Attttttttttttttttt----------------------ttttttttatacagaatctcactctgtcatccatgctggagtgcggtggtgtgatctcggctcactgcagccttcagttcagtcc-----------------aacctccaccaccccagttcaagcgattctcctgcctcagactcctgagtagctggaattatagccgcgtaccaccacgcccggctgatttttatatttttagtagagacagggtttcaccatgttggccaggctggtctggaactcctgacttcaggtgacccacccaccc---------aaagtgctgggattacaggcgtgagccaccgcgcccagc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91556339   0 +  98207768 C
e canFam3.chr31              28032336   0 +  39895921 C

a score=6679.000000
s hg38.chr21_GL383581v2_alt     12926 3 +    116689 cTA
s panTro4.chr21              19516587 3 +  32799110 cTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412535 3 +  48394510 cTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19943810 3 +  32716333 cTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185110399 3 - 198365852 GTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178951786 3 - 192294377 GTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167332101 3 - 180432695 gta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608988 3 -  90373283 GTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37414879 3 +  50472720 TTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28032336 3 +  39895921 CTA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91556339 0 +  98207768 C

a score=956956.000000
s hg38.chr21_GL383581v2_alt     12929 301 +    116689 GAGGTTGGTTTTAGTAAAAGAAACATAGGTTAGGGTACATGTGAATATTCCTGTTAG------------------AAAAAGGTGAAATCGGGGATGATTT----------CTTTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAGGGCCTTTGCATTTGTTT---TTAGATACTTTGTTTTAGATACAAACATGTGTTTGGGACTTTTTA---------------TTAGTTTTGAGGCTTGTGAGACTTAAA---TTT--CCACCGTGTTTCTCTACAATAAAGCATTGCTATGATTAAAAATGAAGATG---CCTTTGTTTTT--TGA----CAGAGTATCAAGACCAAAATTACA
s panTro4.chr21              19516590 301 +  32799110 GAGGTTGGTTTTAGTAAAAGAAACATAGGTTAGGGTACATGTGAATATTCCTGTTAG------------------AAAAAGGTGAAATCGGGGATGATTT----------CTTTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAGGGCCTTTGCATTTGTTT---TTAGATACTTTGTTTTAGATACAAACATGTGTTTGGGACTTTTTA---------------TTAGTTTTGAGGCTTGTGAGACTTAAA---TTT--CCACCGTGTTTCTCTACAATAAAGCATTGCTATGATTAAAAATGAAGATG---CCTTTGTTTTT--TGA----CAGAGTATCAAGACCAAAATTACA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412538 300 +  48394510 GAGGTTGGTTTTAGTAAAAGAAACATAGGTTAGGGTACATGTGAATGTTCCTGTTAG------------------ATAAAGGTGAAATTGAGGATGA---------------TTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAAGGCCTTTGCATTTGTTT---TTAGATACTTTGTTTTAGATATAAACATGTGTTTGGGACTTTTTA---------------TTAGTTTTGAGGCTTGTGAGACTTAAA---TTT--CCACCCTGTTTCTCTACAATAAAGCATTGCTATGATTAAAAATGAAGATG---CCTTTGTTTTT--TGACAGTCAGAGTAGCAAGACCAAAATTACA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19943813 300 +  32716333 GAGGTTGGTTTTAGTAAAAGAAACGTAGGTTAGGGTACCTGTGAATGTTCCTGTTAG------------------AAAAAGGTGAAATTGAGGATGA---------------TTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAGAGCCTCTGCATTTGTTT---TTAGATACTTTGTTTTAGATACAAACATGTGTTTGGGACTTTTTA---------------TTAGTTTTGAGGCTTGTGAGACTTAAA---TTT--CCACCCTGTTTCTCTACAATAAAGCATTGCTATGATTAAAAATGAAGATG---CCTTTGTTTTT--TGACAGTCAGAGTAGCAAGACCAAAATTACA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185110402 304 - 198365852 GAGGTTGG-TTTAGTAAAAGAAACATAGGTTAGGATACATGTGAATGTTCCTGTTAG------------------AAGAAGGTGAAATTGAGGATGATTT----------CTTTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAGGACCTTTGCATTTGTTT---TCAGATACTTTGTTTTAGATACAAACATGTGTTTGGGACTTTTTA---------------TTAGTTTTGAGGCTTGTGAGACTTAAA---CTT--CCACCCTGTTTCTCTACAATAAAGCATTGCTATGATTAGAAATGAAGATG---CCTTTGTGTTT--TGACAGTCGGAGTAGCAAGACCGAAATTACA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178951789 304 - 192294377 GAGGTTGG-TTTAGTAAAAGAAACATAGGTTAGGATACATGTGAATGTTCCTGTTAG------------------AAGAAGGTGAAATTGAGGATGATTT----------CTTTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAGGACCTTTGCATTTGTTT---TCAGATACTTTGTTTTAGATACAAACATGTGTTTGGGACTTTTTA---------------CTAGTTTTGAGGCTTGTGAGACTTAAA---CTT--CCACCCTGTTTCTCTACAATAAAGCATTGCTATGATTAGAAATGAAGATG---CCTTTGTGTTT--TGACAGTCGGAGTAGCAAGACCGAAATTACA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167332104 304 - 180432695 GAGGTTGG-TTTAGTAAAAGAAACATAGGTTAGGATACATGTGAATGTTCCTGTTAG------------------AAGAAGGTGAAATTGaggatgattt----------ctttttctttttcagtttgtagATTTGATAATGGAAGAGGACCTTTGCATTTGTTT---TCAGATACTTTGTTTTAGATACAAACATGTGTTTGGGACCTTTTA---------------TTAGTTTTGAGGCTTGTGAGACTTAAA---CTT--CCACCCTGTTTCTTTACAATAAAGCATTGCTATGATTAGAAATGAAGATG---CCTTTGTGTTT--TGACAGTCGGAGTAGCAAGACCGAAATTACA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31608991 294 -  90373283 GAGGTTGG-TTTAGTAAAAGAAACATAGGTTAGGATACATGTGAATGTTCCTGTTAG------------------AAGAACGTGAAATTGAGGATGATTT----------CTTTTTCTTTTTCAGTTTGTAGATTTGATAATGGAAGAGGACCTTTGCATTTG-TT---TCAGATACTTTGTTTTAGATATAAACATGTGTTTGGGACTTTTTA---------------TTAGTTTTGAGGCTTGTGAGATTTAAA---TTT--CCACCCTGTTTCTCTACAATAAAGCATTGCTATGATTAAAAATGAAGATG---CCTTTGTGTTC--TGACAGTTGGAGTAGCAAGACC---------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37414882 281 +  50472720 GAGGTTGGTTTTAGTAAAAGAAAC--AGGTTACAGTACATGTGAATGTTCCTGTTAG------------------AAAAAGTTGAAATTGAGGATGATTT----------CTTTTTC-TTTTCGATTTGTAGATTTGATGATGGAAGAGAGCCTTTGCATTTCTTT---TTGGATACTTT----------------CACGTTAGGGACTTTCTA---------------TTAATCTTGAGGCTTGTGGG-----AA---TTT--CCACCCTATTTCTCTACAATAAAGCATTGCTGTGATTAAAAATGAAGATG---CCTTTGTTTTT--TGACAGTCAGAGTAGCAAGACCAAAATTACA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91556339 284 +  98207768 GAGGTTGGTTTTAGTAAGAAAAGCATTGGT----------------------------------------------AAACACTAAAGC--AGGCTGGTCCCCCACCCTCACTCCCTCTGCTGCAGAGCTCCGCTCTTGTGAGGGGAAGAGGTCTCTGGTTTTGTTTGACTTTAAAAATCAGTTTT-----------CTTATTTGAGGTTTTTTT---------------TTTTTTTAACTGATTTTGAGACTAAGA---TTTAAAAACTGTGTTTGTCTGTGGTCAAGCATGACTGCCATTGTAAAGGAAGGCGTCCCCTTAGCTTTTTATGAAGGTCACAGTAGCAAGGCCAAATCTATA
i mm10.chr16                C 0 I 869
s canFam3.chr31              28032339 329 +  39895921 GAGGTTGGTTTTGGTGAAAGAAACAAAAGATGGGGTGACGGTGAACGTACCTATTTGGAAGAGTTGAGGGGTAACGAGAAACTGAAACCAGGGCTGATCG----------TGTTTTCTTTTCCAA-TTGCTGATTCGATGATGCGGGAGGGCCTTTGCTCTTGTTT---TTG--------TTTTTCAAGACTTTTACATGTCGGGGATGTTTCAGTGACATGAAATAATTTCATTTTGAGGCTCATGGGACTTCAAACTTTT--CCATCCCACTTCTCTACAGTAAAGCATTACTGAAATTATAAAGGAAGGTG---CCT--GTCTTC--TGGTAGTACAGGAGCCAAAGCCAAAATACT-
i canFam3.chr31             C 0 C 0

a score=1353055.000000
s hg38.chr21_GL383581v2_alt     13230 499 +    116689  
s panTro4.chr21              19516891 511 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34412838 496 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19944113 503 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185110706 515 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178952093 511 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167332408 511 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31609285 497 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37415163 465 +  50472720  
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28032668 396 +  39895921  
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I

a score=357931.000000
s hg38.chr21_GL383581v2_alt     13729 125 +    116689 tgcagtggcgtgatctcagctcactgaaacctccgccgcctgggttcaagtgattgtcctgcctcagccttccaagtagctggga--ttacaggcgcccgccaccatgcctggctaa-tttttttgta
s panTro4.chr21              19517402 125 +  32799110 tgcagtggcgcgatctcagctcactgaaacctccgccgcctgggttcaagtgattgtcctgcctcagccttccaagtagctggga--ttacaggcgcccgccaccatgcctggctaa-tttttttgta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34413334 125 +  48394510 tgcagtagcatgatctcagctcactgaaacctccgctgccttggttcaagtgattctcctgcctcagccttccaagtagctggga--ttacaggcgcccgccaccatgcctggctaa-tttttttgta
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19944616 125 +  32716333 tgcagtggcgtgatctcagctcactgaaaccttcgccccatgggttcaagtgattctcctgcctcagccttccaagtaactggga--atacaggcgcccgccaccaggcctggctaa-tttatttgta
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111221 126 - 198365852 tgcagtggcgcaatctcagctcactgaaacctctgccccctgggtttaagtgattctcctgcctcagcctcccgagtagctggga--ctacaggcgtccgtcaccatgcctggctaattttttttgta
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178952604 126 - 192294377 tgcagtggcgcaatctcagctcactgaaacctccgccccctgggtttaagtgattctcctgcctcagcctcccgagtagctggga--ttacaggcgtccgtcaccatgcctggctaattttttttgta
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167332919 126 - 180432695 tgcagtggcgcaatctcagctcactgaaacctccgccccctgggtttaagtgattctcttgcctcagcctcccgagtagctggga--ttacaggcatccgtcaccatgcctggctaattttttttgta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31609782 126 -  90373283 tgcagtggcgcaatctcagctcactgaaacctccgccccctgggtttaagtgattctcctgcctcagcctcccgagtagctggga--ttacaggcatccgtcaccatgcctggctaattttttttgta
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37415628 127 +  50472720 tacagtggcacgatcgccgctcactgcaacctctgtctcccaggttcaagtgattctcctgcctccacctcccaagtagctgggatgttataggtgcttgccaccgtgcctggctaa-tttttttgta
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28033064   0 +  39895921 C

a score=829042.000000
s hg38.chr21_GL383581v2_alt     13854 303 +    116689 tttttagtagagatgcagtttcaccatgttagctaggctggtttcgaactcctcacctgaagtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacccagccATTATTCTCATTTTAGACTTTTTTTTCTAAATTCGTTCTCTTGTTTGAAAAT----------------------------------------------------tgtgtgtgtgtgtgtgtgtgtgtAAACCAAACCAGACTGGGGTCACACTTCTGGGGTCTATTTCCTT---TTTTATTTTAACTTGATGTAGTTAA------ATGTGAGCATTTTTTCATGTAATTATTTCTGTGT
s panTro4.chr21              19517527 318 +  32799110 tttttagtagagatgtggtttcaccatgttagctaggctggtttcgaactcctgacctgaagtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacccggccattattctcattttagacttttttttctaaattcgttctcttgtttgaaaat--------------------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaccaaaccagactggggtcacacttctggggtctatttcctt--------ttttaatttgatgtagttaa------atgtgagcattttttcatgtaattatttctgtgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34413459 292 +  48394510 tttttagtagagatgtggtttcatcatgttagctaggctggttttgaactcctgacctgaagtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacccggccattattctcattttagac-tttttttctaaattcgttctcttgtttgaaaat---------------------------------------------------------------gtgtgtgtgtgtaaaccaaaccagactggggtcacacttctggggtctatttcctt--tttttattttaatttgatgtagttaa------atgtgagcatttcttcatgtaattatttctgtgt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19944741 326 +  32716333 tttttagtagagatgtggtttcaccatgttacctaggctggattagaactcctgacctgaagtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacccggccATTATTCTCATTTTAGAC-TTTTGTTCTAAATTCATTCCCTTGTTTGAAAAt-----------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAACCAAACCAGACTGGGGTCATACTTCTGGGGTGTATTTCCTT--TTTTTATTTTAATTTGACATAGTTAA------ATGTGAGCATTTTTTCATGTAATTATTTCTGTGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111347 297 - 198365852 tgtttagtagagatgtggtttcactatgttagccaggctgtttttgaactcctgacctgaagtgatctgcccacctcggcctcccaaagtgctgggattagaggtgtgagccactgcacccagccacgattctcattttagac-tttttttctaaattcattctcttgtttgaaaat-----------------------------------------------------gtgtgtgtgtgcgcgtgtgtgtaaaccaa-----actggggtcacacttttggggtctctttcctt--tttttattttaatttgccatagttca------atgtgagcattttttcatgtaattattactgtgt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178952730 297 - 192294377 tgtttagtagagatgtggtttcactatgttagccaggctgtttttgaactcctgacctgaagtgatctgcccacctcggcctcccaaagtgctgggattagaggtgtgagccactgcacccagccacgattctcattttagac-tttttttctaaattcattctcttgtttgaaaat-----------------------------------------------------gtgtgtgtgtgcgcgtgtgtgtaaaccaa-----actggggtcacacttttggggtctctttcctt--tttttattttaatttgccatagttca------atgtgagcattttttcatgtaattattactgtgt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333045 297 - 180432695 tgtttagtagagatgtggtttcactatgttagccaggctgtttttgaactcctgacctgaagtgatctgcccacctcagcctcccaaagtgctgggattagaggtgtgagccactgcacccagccacgaTTCtcattttagac-tttttttctaaattcattctcttgtttgaaaat-----------------------------------------------------gtgtgtgtgtgtgcgtgtgtgtaaaCCAA-----ACTGGGGTCACACTTTTGgggtctctttcctt--tttttattttaatttgccatAGTTCa------atgtgagcattttttcatgtaattattaCTGTGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31609908 297 -  90373283 tgtttagtagagatgtggtttcactatgttagccaggctgtttttgaactcctgacctgaagtgatctgcccacctcggcctcccaaagtgctgggattagaggtgtgagccactgcacccagccactattctcattttagac-tttttttctaaattcattctcttgtttgaaaat-----------------------------------------------------gtgtgtgtgtgtgcatgtgtgtaaactaa-----actggggtcacacttttggggtctctttcctt--ttttaattttaatttgccatagttca------atgtgagcattttttcatgtaattattactgtgt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37415755 355 +  50472720 tttttagtagagatggggtttcactatgttggctgggctggtttcgaactcctgacctgaaatgatctgcctgccttggtctcccacagtgctgggattacaggtgtgagccaccatgcccggccACTATTCTCATTTTAGAC-TTTTTTTATAAATTCATTCTCTTGTTTGAAATgagagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAACCAAACCAAACTGGGGTCAAACTTTCGAGATCTAGTTCCTT--TTTTTCTCTTAATTTAACGTAGTGAA------GTGTGAGCATTTTTTCATATACTTATTTCTGTGT
i calJac3.chr21             C 0 M 340
s canFam3.chr31              28033064 163 +  39895921 tttttactaaatgcatg----cact--------------------------------------------------------------------------------------------------------------------------------------------tggtttgacaat---------------------------------------------------------gtgccggtgcatgtgtaaaactgaaacaaaactggggttacacttctgggtcctccttccttttttttttttttaaccaaacatagttaattaagtgtaggagcactttttctcataattatctctgcgt
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I

a score=304194.000000
s hg38.chr21_GL383581v2_alt     14157 111 +    116689 GGACAT------TGTATGTTTCATTATGTGACATATCACATGTGTTGTATTTAACT-TTTCCCCAGTCATGGGCGTAGACAGTTGGCAGCTTGTGCCTGTCCTAAGTCATGAcctcgt
s panTro4.chr21              19517845 111 +  32799110 ggacat------tgtatgtttcattatgtgacatatcacatgtgttgtatttaact-tttccccactcatgggcgtagacagttggcagcttgtgcctgtcctaagtcatgacctcgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34413751 111 +  48394510 ggacat------tgtatgtttcattatgtgacatatcacatgtgctgtatttaact-tttccccACTCATGGGTGTAGACAGTTGGCAGCTTGTGCCTGTCCTAAGTCatatcatcgt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945067 111 +  32716333 GGACAT------TGTATGTTTCATTATGTGACATATCACATGTGTTGTATTTAACT-TTTCCCCACTCATGGGCGTAGACAGTTGGCAGCTTGTGCCTGTCCTAAGTCATGtcctcat
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111644 111 - 198365852 ggacat------tgtatgtttcattatgtgacatatcacatgtgctgtatttaact-tttccccACTCATGGGTGTAGACAGTTGGCAGTTGGTGCCTGTCCTAAGTCacatcctcga
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953027 111 - 192294377 ggacat------tgtatgtttcattatgtgacatatcacatgtgctgtatttaact-tttccccactcatgggtgtagacagttggcagttggtgcctgtcctaagtcacgtcctcga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333342 111 - 180432695 GGACAT------TGTAGGTTTCATTATGTGACATATCACATGTGCTGTATTTAACT-TTTCCCCACTCATAGGTGTAGACAGTTGGCAGTTGGTGCCTGTCCTAAGTCACGTCTTCGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31610205 111 -  90373283 ggacat------tgtatgtttcattatgtgacatatcacatgtgctgtatttgact-tttccccactcatgggcgtagacagttggcagttggtgcctgtcctaagtcatgtcctcgt
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28033227 118 +  39895921 aaacatttttactgctcgttttattgtatgatgtgtcagacatgatgtatttaactctttccccacttgcgggtgtagacagtccccagtttgtgactgttgtcggtagtggcctcgt
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e calJac3.chr21              37416110 340 +  50472720 M

a score=334918.000000
s hg38.chr21_GL383581v2_alt     14268 109 +    116689 acatgaatcatatctggttattttcttacacttctagaagagaggttgctgggtcaaaggggatggacttacttaatgtttttgTGAGT-GACCTCACAAAGGCTGGACA
s panTro4.chr21              19517956 109 +  32799110 acatgaatcatatctggttattttcttacacttctagaagacaggttgctgggtcaaaggggatggacttacttaacgtttttgTGAGT-GACCTCACAAAGGCTGGACA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34413862 109 +  48394510 acatgaatcatatctggttattttcttacacttctagaagagaggttgctgggtcaaaggggatggacttacttaacgtttttgTGAGT-GACCTCACAAAGGCTGGGCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945178 109 +  32716333 acatgaatcatatctggttattttcttacacttctagaagagaggttgctgggtcaaaggggatggacttacttaatgtttttgTGAGT-GACCTCACAAAGGCTGGACA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111755 109 - 198365852 acatgaatcatatctggttattttcttacacttctagaagaaaggttgctgggccaaaggggatggacttatttaacatttttgTGAGT-GACCTCACAAAGGCTGGACA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953138 109 - 192294377 acatgaatcatatctggttattttcttacacttctagaagagaggttgctgggccaaaggggatggacttatttaacatttttgTGAGT-GACCTCACAAAGGCTGGACA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333453 109 - 180432695 ACATGAATCATATCTGGTTATTTTCTTACACTTCTAGAAGAGAGGTTGCTGGGCCAAAGGGGATGgacttatttaacatttttgtgagT-GACCTCACAAAGGCTGGACA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31610316 109 -  90373283 acatgaatcatatctggttattttcttacacttctagaagagaggttgctgggccaaaggggatggacttatttaacatttttgTGAGT-GACCTCACAAAGGCTGGACA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37416451  99 +  50472720 ACATGAATCTCCTTTGAGTA-----TTACACTTCTAGTGGCGAGGTTTAGGGGTCCATGCTGAATGACTTGACCA------TAATGAGCAGCCCTCGCAAAGGGTGGACG
i calJac3.chr21             M 340 C 0
s canFam3.chr31              28033345 101 +  39895921 acataaatcac--ccgattgttttcttgcatttgtagcagaggaattgctgggtcagaaagGA------CACTTAGTGTTTTTGGAAGT-GATCCAACAGAGGCTGAACA
i canFam3.chr31             C 0 I 762
e mm10.chr16                 91556623 869 +  98207768 I

a score=40204.000000
s hg38.chr21_GL383581v2_alt     14377 13 +    116689 TAGCTCTTGAGTC
s panTro4.chr21              19518065 13 +  32799110 TAGCTCTTGAGTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34413971 13 +  48394510 TAGCTCTTGAGTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945287 13 +  32716333 TAGCTCTTGAGTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111864 13 - 198365852 TAGCTCTTGAGTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953247 13 - 192294377 TAGCTCTTGAGTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333562 13 - 180432695 TAGCTCTTGAGTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31610425 13 -  90373283 TAGCTCTTGAGTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37416550 13 +  50472720 TAGTTCGGGAGTC
i calJac3.chr21             C 0 I 7
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28033446 762 +  39895921 I

a score=75136.000000
s hg38.chr21_GL383581v2_alt     14390 29 +    116689 CCAGGGACAGGCTGAGCCCCGGCAGTGGC
s panTro4.chr21              19518078 29 +  32799110 CCAGGGACAGGCTGAGCCCCGGCAGTGGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34413984 29 +  48394510 CCAGGGACAGGCTGAGCCCCGGCAGTGGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945300 29 +  32716333 CCAGGGACAGGCTGAGCCCCGGCAGTGGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111877 29 - 198365852 CCAGAGACAGGCTGAGCCTCGGCAGTGGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953260 29 - 192294377 CCAGAGACAGGCTGAGCCTCGGCAGTGGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333575 29 - 180432695 CCAGAGACAGGCTGAGCCTCGGCAGTGGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31610438 29 -  90373283 CCAGAGACAGGCTGAGCCTCGGCAGTGGC
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28033446 762 +  39895921 I
e calJac3.chr21              37416563  7 +  50472720 I

a score=183082.000000
s hg38.chr21_GL383581v2_alt     14419 79 +    116689 AGGGGTTTGGGGGAGCAGGCCCTGCACTGCATTTGAGGAAGAGCCGTGCATGTTGCTCTTGGAGGAGGAGGAGCGGGGC
s panTro4.chr21              19518107 79 +  32799110 AGGGGTGTGGGGGAGCAGGCCCCGCACTGCATTTGAGGAAGAGCCGTGCATGTTGCTCTTGGAGGAGGAGGAGCGGGGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414013 79 +  48394510 AGGGGTGTTGGGGAGCAGGCCCCGCACTGCATTTGAAGAAGAGCCGTGCATGTTGCTCTTGGAGGAGGAGGAGCGGGGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945329 51 +  32716333 GGGTG----------------------------TGAGGAAGAGCCGTGCACGCTGCTGTTGGAGGAGGAGGAGCGGGGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111906 79 - 198365852 AGGGGTGTGGAGGAGCAGGCCCCGCACCGCATTGGAGGAAGAGCCGTGCATGTTGCTCTTGGAGGAGGAGGAGTGGGGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953289 79 - 192294377 AGGGGTGTGGAGGAGCAGGCCCCGCACCGCATTGGAGGAAGAGCCGTGCATGTTGCTCTTGGAGGAGGAGGAGTGGGGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333604 79 - 180432695 AGGGGTGTGGAGGAGCAGGCCCCGCACCGCATTGGAGGAAGAGCCGTGCATGTTGCtcttggaggaggaggagcgggGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31610467 79 -  90373283 AGGGGTGTGGAGGAGCAGGCCCCGCACTGCATTGGAGGAAGAGCCGTGCATGTTGCTCTTGGAGGAGGAGGAGCGGGGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37416570 78 +  50472720 TGAGGCTTTCAGGAGCAGTCCTCACTAATCATATCAGGAAGTGCCAAGCAC-CTGCTGTTAGAGGAGGAGGAATGGCAA
i calJac3.chr21             I 7 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28033446 762 +  39895921 I

a score=1480629.000000
s hg38.chr21_GL383581v2_alt     14498 454 +    116689 GGTTAGAGGGTCTTTAGGTATCTGTCTACCTTGAAAAAGAAAT------CACTCACCTCTTCCAGAGCACGCCCCT--CACCCCCGACCTGAGA-GGAGAGGCTCGTGGTTTGCGATCCCTCTCCCCATTAGGGTCTGTCACCCTGGGGCTGAGTAGT-AGGTATCTATGGCGGGTGTCTT-CATGGAAGCCCTGGCCACGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCAACTTAAGCGGAAGATGCATCTTGGAGAGGGTCGGAGGTACAGTTAGAAGCATGTGTGGTACGTGAAAGCCGGTGGTCGTGGGGATACAGAGCGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGGCCTTGCTTTCTGGGCCATAGTTGCTGT--------TGTAG-GGGGATACTGTCCGCTG-CCCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGTCTGTCACCTAAGG
s panTro4.chr21              19518186 454 +  32799110 GGTTAGAGGGTCTTTAGGTATCTGTCTACCTTGAAAAAGAAAC------CACTCACCTCTTCCAGAGCACGCCCCT--CACCCCCGACCTGAGA-GGAGAGGCTCGTGGTTTGCGATTCCTCTCCCCATTAGGGTCTGTCACCCTGGGGCTGGGTAGT-AGGTATCTATGGCGGGTGTCTT-CATGGAAGCCCTGGCCACGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCAACTTAAGCGGAAGATGCATCTTGGAGAGGGTCGGAGGTACAGTTAGAAGCATGTGTGGTACGTGAAAGCCGGTGGCCGTGGGGATACAGAGGGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGGCCTTGCTTTCTGGGCCATAGTTGCTGT--------TGTAG-GGGGATACTGTCTGCTG-CCCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGTCTGTCACCTAAGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414092 453 +  48394510 GGTTAGAGGGTCTTTAGGTATTTGTCTACCTTGAAAAAGAAAT------CACTCACCTCTTCCAGAGCACACCCCT--CACCCCCGACCTGAGA-GGGGAGGCTCATGGTTTGCGATCCCTCTCCCCATCAGGGTCTGTCACCCTGGGGCTGGGTAGT-AGGTATCTATGGCGGGTGTCTT-CATGGAAGCCCTGGCCACGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCAACTTAAACGGAAGATGCATCTTGGAGAGGGTCGGAGGTACAGTTAGAAGCATGTGTGGTATGTGAAAGCCGGTGGCCGTGGGGATACAGAGGGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGGCTTTGCTTTCTGGGCCATAGTTGCTGT--------TGT-G-GGGGACACTGTCCACTG-CCCCTACTCAGGCTCCCAGCAGCCACCATCTTGGCCTTTCTGAAGTCTGTCACCTAAGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945380 454 +  32716333 GGTTAGACGGTCTTTAGGTATCTGTCTACCTTGAAAAAGAAAT------CACTCACCTCTCCCAGGGCACGCCCCT--CACCCCCGACCTGAGA-GGAGAGGCTCGTGGTTTGCGATCCCTCTCCCCATTAGGGTCTGTCACCCTGGGGCTGGGTAGT-AGGTATCTATGGCGGGTGTCTT-CATGGAAGCCCTGGCCACGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCAACTTAAACGAAAGATGCATCTTGGAGAGGGTTGGAGGTACAGTTAGAAGCATGTGTGGTACGTGAAAGCCGGTGGCCGCGAGGATACAGAGGGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGGCCTTGCTTTCTGGGCCATAGTTGCTGT--------TGTAG-GGGTATACTGTCCACTG-CCCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGTCTGTCACCCGAGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185111985 455 - 198365852 GGTTAGAGGGTCTTTAAGTATCTGTCTACCTTCAAAAAGAAAT------CACTCACCTCTTCCAGGGCACGCCCCT--CACCCCCCGCCTGGGA-GGTGAGGCTCATGGTTTGCGATCCCTCTCCCCATTAGGGTCTGTCACCCTGGAGCTGGGTAGT-AGGTATCTATTGCGAGTGTCTT-CATGGAAGCCCTGGCCATGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCCACTTAAACGGAAGATGCATTTCGGAGAGGGTTGGAGGTACAGTTAGAAGCATGTGTGATACGTGAAAGCTGGTGGCCGTGGGGATACGGAGTGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGACCTTGCTTTCTGGGCCATAGTTGCTGT--------CCTAGAAGGGACACTATCCACAG-CCCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGACTGTCACCTAAGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953368 455 - 192294377 GGTTAGAGGGTCTTTAAGTATCTGTCTACCTTCAAAAAGAAAT------CACTCACCTCTTCCAGGGCACGCCCCT--CACCCCCCGCCTGGGA-GGTGAGGCTCATGGTTTGCGATCCCTCTCCCCATTAGGGTCTGTCACCCTGGAGCTGGGTAGT-AGGTATCTATTGCGAGTGTCTT-CATGGAAGCCCTGGCCATGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCCACTTAAACGGAAGATGCATTTCGGAGAGGGTTGGAGGTACAGTTAGAAGCATGTGTGATACGTGAAAGCTGGTGGCCGTGGGGATACGGAGTGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGACCTTGCTTTCTGGGCCATAGTTGCTGT--------CCTAGAAGGGACACTATCCACAG-CCCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGACTGTCACCTAAGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167333683 454 - 180432695 GGTTAGAGGGTCTTTAAGTATCTGTCTACCTTCAAAAAGAAAT------CACTCACCTCTTCCAGGGCACGCCCCT--CACCCCCCGCCTGGGA-GGTGAGACTCATGGTTTGCGATCCCTCTCCCCATTAGGGTCTGTCACCCTGGAGCTGGGTAGT-AGGTATCTATTGCGAATGTCTT-CATGGAAGCCCTGGCCATGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCCACTTAAACGGAAGATGCATTTCGGAGAGGGTTGGA-GTACAGTTAGAAGCATGTGTGATACGTGAAAGCTGGTGGCCGTGGGGATACGGAGTGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGACCTTGCTTTCTGGGCCATAGTTGCTGT--------CCTAGAAGGGACACTATCCACAG-CCCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGACTGTCACCTAAGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31610546 457 -  90373283 GGTTAGAGGGTCTTTAAGTATCTGTCTACCTTCAAAAAGAAAT------CACTCACCTCTTCCAGGGCACACCCCTCACACCCCCTGCCTGAGA-GGAGAGGCTCATGGTTTGCGATCCCTCTCCCCATTAGGGTCTGTCACCCTGGAGCTGGGTAGT-AGGTATCTATTGCGAGTGTCTT-CATGGGAGCCCTGGCCATGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCCACTTAAACGGAAGATGCATTTCGGAGAGTGTTGGAGGTACAGTTAGAAGCATGTGTGATACGTGAAAGCTGGTGGCCGTGGGGATACGGAGTGGTCTCCAGTCTCGTCTC--CTGTCTCCCATGACCTTGCTTTCTGGGCCATAGTTGCTGT--------CCTAGAAGGGACACTATCCACAG-CGCCTACTCAGGCTCCCAGCAGCCACCTCCTTGGCCTTTCTGAAGACTGTCACCTAAGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37416648 447 +  50472720 GATCAGAGGGTCTTACCGTATCCCATCACCTTAACAAAGAAG----------TCTCCTATTCCTGAGCATACCCCT--CACCCCC-ACCTGAGA-GGAGAGGCTTGTGGTTTTCAATCCCTCTCCCCATTAGGGTCTGTCACCTTGGGGCTGGGTAGT-AGGTGTCTATGGCAGGTGTCTT-CGTGGAAGCTCTGGACATGCATCTTGAAGTGGCTTTCATCTTGTCCCTTGCCACTTAGAAAAAAGATAAATCTTGGCCAGGGTCAGAGGTACAGCTAGAAGCATGTATGGTATGTGAAAGCCAGTGGGCCTGGGGACACTGAGGGATCATCAGTCT-GTCTC--CTGTCTCCCATGGTCTTGCTTTCTGGGCCATGGTTGCTGT--------CTTAGAAGGGACACTGTCCACTG-CCCCTACTCAGGCTCCCAGCAGCAACTTCCTTAGCC--TCTGAAGTCTGGAACCTATGG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28034208 451 +  39895921 GGTTAGAGTACCTATAAGTATCTGTAGAACTTAAAAAAAGAATACAACCCACTTACTCTTGCTGAAGCA---------CACCGCCAACCTAAGATGGGGGTGCCTGTGCTTGGGGATCTCTCTCCCGAGTAGGATCTGGGCACCCAGCGCTTGGCGGTCATGTGAGTGTGGCAGGCATCTTCCATGGAAGCCCTGGGCACGCATCCTGAAGAGGCCTTCATCTTGCCACTTGCCACTTTGACAGAAGA---GTCCCCAGTCGAGTCAGAGGTACACTTAGAAGCACGTGTGATGCGTGAGAGCCAGTGGC-------------AGTGATCCTCAGCCTCATCTCTTCCATGTACCCTGGTCTTGCTTTCTAGGCCAGAGCTGCTGTGTGTGTTCTCTACAGAGAACACTGCCTACTGCCCCCCATTGAGGTTTCTAGCAGCCACCTCCCTGG-TTTTCTCAAGTCTGTCACCTAAGG
i canFam3.chr31             I 762 I 231
e mm10.chr16                 91556623 869 +  98207768 I

a score=6246.000000
s hg38.chr21_GL383581v2_alt     14952 3 +    116689 CAA
s panTro4.chr21              19518640 3 +  32799110 CAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414545 3 +  48394510 CAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945834 3 +  32716333 CAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185112440 3 - 198365852 TAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953823 3 - 192294377 TAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334137 3 - 180432695 TAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611003 3 -  90373283 TAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417095 3 +  50472720 GAA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28034659 231 +  39895921 I

a score=545258.000000
s hg38.chr21_GL383581v2_alt     14955 150 +    116689 AGAGGTCAGAGCTGGGGACTAG------AGTCCCACGTGGGAGTGTGGCATTGGGACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAGGTTTTCATATGGGTGAGACAAATCCTCTTTGAATGGGCAGCTAT-GGG
s panTro4.chr21              19518643 150 +  32799110 AGAGGTCAGAGCTGGGGACTAG------AGTCCCACGTGGGAGTGTGGCATTGGGACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAGGTTTTCATATGGGTGAGACAAATCCTCTTTGAATGGGCAGCTAT-GGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414548 150 +  48394510 AGAGGTCAGAGCTGGGGACTAG------AGTCCCACGTGGGAGTGTGGCATTGGGACTCTGGGAAAGCCACTGTCATTCACAAGGATGTGTGACCATGTATTTGGCAAGGTTTTCATATGGGTGAGACAAATCCTCTTTAAATGGGCAGCTAT-GGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945837 150 +  32716333 AGAGGTCAGAGCTGAGGACTAG------AGTCCCACGTGGGAGTGTGGCATTGGGACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAGGTTTTCGTATGGGTGAGACAAATCCTCTTTAAATGGGCAGCTAT-GGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185112443 151 - 198365852 AGAGGTCAGAGCTGGGGACTAG------AGTCCCGTGTGGGGCTGTGGCATTGGAACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAAATTTTCATATGGGTGAGACAAATCCTCTTTAAATGGGCAGCTATGGGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953826 151 - 192294377 AGAGGTCAGAGCTGGGGACTAG------AGTCCCGTGTGGGGCTGTGGCATTGGAACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAGATTTTCATATGGGTGAGACAAATCCTCTTTAAATGGGCAGCTATGGGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334140 151 - 180432695 AGAGGTCAGAGCTGGGGACTAG------AGTCCCGTGTGGGGCTGTGGCATTGGAACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAGATTTTCATATGGGTGAGACAAATCCTCTTTAAATGGGCAGCTATGGGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611006 151 -  90373283 AGAGGTCAGAGCTGGGGACTAG------AGTCCCGTGTGGGGCTGTGGCATTGGAACTCTGGGAAAGGCACTGTCATTCACAAGGATGTGTGGCCATGTATTTGGCAAGATTTTCATATGGGTGAGACAAGTCCTCTTTAAATGGGCAGCTATGGGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417098 157 +  50472720 AGAGGTCAGAGCTGGGGAATAGAGTCCCAGTCCCATGTCGGGGTGTGGCACTGGGACTCTGGGAAAAGCACTGTCATTCACAAGGATGTATGACGATATATTTGGCAGGGTTTTCATATGGGTGAGATACATCCTCTTTAAATGGGCAGCTATGGGG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28034890 146 +  39895921 AGAGGTCGGAGCTGGAGAGTAG------AGTCCCATGTGGGGGTGTGGCATTGGGACTCTGGGGAATGCATTGTCATTTACCAGAATATGCCGCCTTGGATTTAGCAGGCTTTTCACATGGGCGAAGCAAA----CTTTAAATGGACAGCTGT-GGg
i canFam3.chr31             I 231 I 315
e mm10.chr16                 91556623 869 +  98207768 I

a score=581215.000000
s hg38.chr21_GL383581v2_alt     15105 189 +    116689 TGGAAAGAAACTCCGCACCAGCAGGAAGCAGGACTGGAGTTTGTATTAACACAGTTCCATTCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGTATTAAAATCAGTTATGGGATGgaatgggagaaaatatttgcaaatcatctatctgacaagggacttgtatccagaatagataacgaactctta
s panTro4.chr21              19518793 189 +  32799110 TGGAAAGAAACTCCGCACCAGCAGGAAGCAGGACTGGAGTTTGTATTAACACAGTTCTATTCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGTATTAAAATCAGTTATGGGATGgaatgggagaaaatatttgcaaatcatctatctgacaagggacttgtatccagaatagataacgatctctta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414698 188 +  48394510 TGGAAAGAAACTCCGCACCAGCAGGAAGCAGGAGTGGAGTTTGTATTAACACAG-TCCATTCCCAAAACATAGGCTACAGAGAGTGAGTTTGAAGTATTAAAATCAGTTATAGGATGgaatgggagaaaatatttgcaaatcatatatctgacaagggacttgtatccagaatagataacgaactctta
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19945987 189 +  32716333 TGGAAAGAAACTCCGCACCAGCAGGAAGCAGGACTGGAGTTTGTATTAACACAGTTCCATTCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGTATTAAAATTGGTTATGGGATGgaataggagaaaatatttgcaaatcatatatctgacaagggacttgtatccagaatagataacgaactctta
i nomLeu3.chr25             C 0 I 173
s rheMac3.chr3              185112594 189 - 198365852 TGGAAAGAAACTCCACACCAGCAGGAAGCAGGACTGGAGTTTGTATTAATGCAGGTCCATGCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGAATTAAAATCGGTTATGGGATGgaatgggagaaaatacttgcaaatcatatatctgacaagggaattgtatccagaatagataacgaactctta
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178953977 189 - 192294377 TGGAAAGAAACTCCACACCAGCAGGAAGCAGGACTGGAGTTTGTATTAATGCAGGTCCATGCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGAATTAAAATCAGTTATGGGATGgaatgggagaaaatacttgcaaatcatatatctgacaagggaattgtatccagaatagataacgaactctta
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334291 189 - 180432695 TGGAAAGAAACTCCACACCAGCAGGAAGCAGGACTGGAGTTTGTATTAATGCAGTTCCATGCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGAATTAAAATCAGTTATGggatggaatgggagaaaatatttgcaaatcatatatctgacaagggaATTGTATCCAGAATAGATAAcgaactctta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611157 189 -  90373283 TGGAAAGAAACTCCGCGCCAGCAGGAAGCAGGACTAGAGTTTGTATTAATGCAGTTCCATGCCCAAAACATAGGCTACAGAGACTGAGTTTGAAGAATTAAAATCAGTTATGGGATGgaatgggagaaaatacttgcaaatcatatatctgacaagggaattgtatccagaatagataacaaactctta
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417255 189 +  50472720 TGGAAAGAAACTCCACAGCAGCAGGAAGCAGGACTGGAGTTTGCATTAACACAGCTCCATTCCCAAGACATAGGCAACAGAGACTGAGTTTGAAGTATTAAAATCAGTTCTGGGATGgaatgggagaaagtatttgcaagccatatatctgacaaaggacttgtatgcagaacagataacaaactctta
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28035036 315 +  39895921 I

a score=2800.000000
s hg38.chr21_GL383581v2_alt     15294 1 +    116689 c
s panTro4.chr21              19518982 1 +  32799110 c
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414886 1 +  48394510 c
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185112783 1 - 198365852 c
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954166 1 - 192294377 c
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334480 1 - 180432695 c
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611346 1 -  90373283 c
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417444 1 +  50472720 c
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28035036 315 +  39895921 I
e nomLeu3.chr25              19946176 173 +  32716333 I

a score=743941.000000
s hg38.chr21_GL383581v2_alt     15295 262 +    116689 aattcaacaattagaagacaaataacccaattaaaaaCCACAgctgggcacaagggatcacacctgtaatcccagcactttgggaggccaaggcaggaggattacttgagtctaggagttcaagaccagcctgggcaacaaggagagacccccaactctacaaagaaattaaaaataaaaataacagtagcagccaagcacagtggctcacgcttgtaatttcagcactttgggaggccgaggtgggcggatcacatgaggc
s panTro4.chr21              19518983 262 +  32799110 aattcaacaattagaagacaaataacccaattaaaaaCCACAgctgggcacaggggaccacgcctgtaatcccagcactttgggaggccaaggcaggaggattacttgagtcttggagttcaagaccagcctgggcaacaaggagagacccccagctctacaaagaaattaaaaataaaaataacagtagcagccaagcacagtggctcacgcttgtaatttcagcactttgggaggccgaggtgggcggatcacatgaggc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34414887 261 +  48394510 aattcaacaattaaaagacaaataacccaattaaaaaCCACAgctgggcacaggggatcacgcctgtaatcccagcactttgggaggccaaggcaagaggattacttgagtctaggagttcaagaccagcctgggcaacaaggagaga-ccccagctctacaaagaaattaaaaataaaaataacattagcagctgagcacagtggctcacgcttgtaatttcagcactttgggaggccgaggtgggcggatcacatgaggc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19946349 262 +  32716333 AATTCAACAATTAAAAGACAAATAACCCAATTAAAAACCACAgctgggcacaggggatcacgcctgtaatcccagcactttgggaggccaaggcaggaggattacttgagtttaggagttcaagaccagcctgggcaacaaggagagacccccagctctacaaagaaattaaaaatAAAAATAATAGTAGCAgctgagcacagtggctcatgcttgtaatttcagcactttgggaggccgaggtgggcagatcacatgaggc
i nomLeu3.chr25             I 173 C 0
s rheMac3.chr3              185112784 255 - 198365852 aattcaataattaaaagacaaataacccaattaaaaaCCACAgctgggcaccgtggatcacgcctgtaatcccagaactttgggaggccaaggagggaggattacttgagtctaggagctcaagaccagcctgggcaacatggagaga-ccccagctctacaaaaaaat------taaaaataaaagtagcgactgggcacagtggctcatgtttataatctcagcactttgggaggccaaggcgggtggatcacatgaggc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954167 255 - 192294377 aattcaacaattaaaagacaaataacccaattaaaaaCCACAgctgggcaccgtggatcacgcctgtaatcccagaactttgggaggccaaggagggaggattacttgagtctaggagctcaagaccagcctgggcaacatggagaga-ccccagctctacaaaaaaat------taaaaataaaagtagcgactgggcacagtggctcatgtttataatctcagcactttgggaggccaaggcgggtggatcacatgaggc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334481 255 - 180432695 aattcaacaattaaaagacaaataacccaattaaaaaccacagctgggcacagtggatcacgcctgtaatcccagaactttgggaggccaaggagggaggattacttgagtctaggagctcaagaccagcctgggcaacatggagaga-ccccagctctacaaaaaaat------taaaaataaaagtagcgactgtgcacagtggctcatgtttataatctcagcactttgggaggccaaggcgggtggatcacatgaggc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611347 261 -  90373283 aattcaacaattaaaagacaaataacccaattaaaaaCCACAgctgggcacagtggatcacgcctgtaatcccagaactttgggaggccaaggagggaggattacttgagtctaggagctcaagaccagcctgggcaacatggagaga-ccccagctctacaaaaaaattaaaaataaaaataaaagtagcgactgggcacagtggctcatgtttgtaatctcagcactttgggaggccaaggcgggtggatcacatgaagc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417445 241 +  50472720 aattcaacagttaa---------aacacaattaaAAACCACAgctgggcacagtggatcacgcctgtaatcccagcactttgggagactgaggcaggaggattacttgagtctaggagttcaagaccagcctgggcaacatagaagaa-ctccaattctacaaa-----------taaaaataaaaGTAGTggccagtcatggtggctcacacttgtaatcccagcactttgggaggctgaggtggacagatcacatgaggc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28035036 315 +  39895921 I

a score=132928.000000
s hg38.chr21_GL383581v2_alt     15557 56 +    116689 caggagtttgagaccagcctgaccaacatag-taaaaccccgtttctactaaaaata
s panTro4.chr21              19519245 56 +  32799110 caggagtttgagacCAGCCTGACCAACATAG-TAAAACCCCGTTTCTACTAAAAATA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415148 56 +  48394510 caggagtttgagaccagcctgatcaacatgg-taaaaccccgtttctactaaaaata
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19946611 57 +  32716333 caggagtttgagaccagcctggccaacatggttaaaaccccgtttctactaaaaata
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113039 56 - 198365852 caggagtttgagaccagcctggccaacatag-taaaaccccgtctctactaaaacta
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954422 56 - 192294377 caggagtttgagaccagcctggccaacatag-taaaaccccgtctctactaaaacta
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334736 56 - 180432695 caggagtttgagaccagcctggccaacatag-taaaaccccgtctctactaaaacta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611608 55 -  90373283 caggagtttgagaccagcctggccaacata--taaaaccccgtctctactaaaacta
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91556623 869 +  98207768 I
e canFam3.chr31              28035036 315 +  39895921 I
e calJac3.chr21              37417686  0 +  50472720 C

a score=144160.000000
s hg38.chr21_GL383581v2_alt     15613 79 +    116689 taaaaaT------TAAccaggca-tgatggtgcatgcct----------------------------------------------------------gtaatcccagcacattgggaggccaaggcaggtggatcacttgaggt
s panTro4.chr21              19519301 79 +  32799110 TAAAAAT------TAAccaggca-tgatggtgcatgcct----------------------------------------------------------gtaatcccagcacattgggaggccaaggcaggtggatcacttgaggt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415204 79 +  48394510 taaaaaT------TAAccaggca-tgatggtgcatgcct----------------------------------------------------------gtaatcccagcacattgggaggccaaggcaggtggatcactggaggt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19946668 79 +  32716333 taaaaat------taAccaggca-tgatggtgcatgcct----------------------------------------------------------gtaatcccagcacattgggaggccaaggcaggtggatcacttgaggt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113095 76 - 198365852 --------------------------------------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------ggtggatcacttgaggt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954478 79 - 192294377 taaaaat------tagccaggca-tgatggtgcatgcct----------------------------------------------------------gtaattccagcactttgggaggccaaggcaggtggatcacttgaggt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334792 79 - 180432695 taaaaat------tagccaggca-tgatggtgcatgcct----------------------------------------------------------ataattccagcactttgggaggccaaggcaggtggatcacttgaggt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611663 79 -  90373283 taaaaat------tagccaggca-tgatggtgcatgcct----------------------------------------------------------gtaattccagcactttgggaggccaaggcaggtggatcacttgaggt
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91557492 79 +  98207768 TAAAAATCAGTCACagccaagcagtggtggcgcatgcct----------------------------------------------------------ttaatcccagcac-tcgggaggcagaggcaggtggatttct------
i mm10.chr16                I 869 C 0
e canFam3.chr31              28035036 315 +  39895921 I
e calJac3.chr21              37417686  0 +  50472720 C

a score=122846.000000
s hg38.chr21_GL383581v2_alt     15692 34 +    116689 caggagtttgagaccagcctggccaacatggtga
s panTro4.chr21              19519380 34 +  32799110 caggagtttgagaccagcctggccaacatggtga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415283 34 +  48394510 caggagttcgagacctgcctggccaacatggtga
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19946747 34 +  32716333 caggagttggagaccagcctggccaacatggtga
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113171 34 - 198365852 caggagttggagaccagcctggccgatatggtga
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954557 34 - 192294377 caggagttggagaccagcctggccgatatggtga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334871 34 - 180432695 caggagttggagaccagcctggccgatatggtga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611742 34 -  90373283 caggagttggagaccagcctggccgatatggtga
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417686 34 +  50472720 caggagtttgagaccagcctggccaacatgatga
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91557571 31 +  98207768 ---gagttcgagaccagcctggtctacagagtga
i mm10.chr16                C 0 I 210
e canFam3.chr31              28035036 315 +  39895921 I

a score=524870.000000
s hg38.chr21_GL383581v2_alt     15726 200 +    116689 caccccatctctact---aaaaatacaaaaattacctgggtgtggtggctcacacctgtagttccagctactcgggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgctgtgagccaagattgcgctactgcactccagcctgggtgacagagcaaaactccatctcaaaaaaaaaaaaaaaaaaaGCGG
s panTro4.chr21              19519414 195 +  32799110 caccccgtctctact---aaaaatacaaaaattagctgggtgtggtggctcacacctgtagttccagctacttgggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgctgtgagccaagattgcgctactgcactccagcctgggtgacagagcaaaactccatctc-----aaaaaaaaaaaaaaGCGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415317 193 +  48394510 caccctggctctact---aaaaatacaaaaattagctgggtgtggtggttcacacctgtagttccagctacttgggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgctgtgagccgagattgcgctactgcactccagcctgggtgacagagcaaaacttcatctc-------aaaaaaaGGGGGGGGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19946781 200 +  32716333 caccccgtctctact---aaaaatacaaaaattagctgggtgtggtggctcacacctatagttccagctactcgggaggctgaggcacgagaatcacttgaacccaggaggtggaggttgctgtgagccaagattgcgctactgccctccagcctgggtgacagagcaaaactccatctcaaaaaaaaaaaaaaaaaaGGGTG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113205 194 - 198365852 caccccatctctact---aaaaatacaaaaattagctgggtgtgg-ggcttgcacctgtagttcctgctactcgggagactgaggcatgagaatcacttgaacccaggaggtggagattgctgtgagctgagatcgcaccactgcactccagcctgggtgacacagcaaaactccatttcaaaaaaaaaaaaa-----GGTGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954591 197 - 192294377 caccccatctctact---aaaaatacaaaaattagctgggtgtga-ggcttgcacctgtagttcctgctactcgggagactgaggcacgagaatcacttgaacccaggaggtggaggttgctgtgagctgagatcgcaccactgcactccagcctgggtgacacagcaaaactccatttcaaaaaaaaaaaaa--aGGGGTGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167334905 197 - 180432695 caccccatctctact---aaaaatacaaaaattagctgggtgtgg-ggcttgcacctgtagtttctgctactcgggagactgaggcacgagaatcacttgaacccaggaggtggaggttgctgtgagctgagatcgcaccactgcactccagcctgggtgacacagcaaaactccatttcaaaaaaaaaaaaa--aaagggta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611776 199 -  90373283 caccccatctctact---aaaaatacaaaaattagctgggtgtgg-ggcttgcacctgtagttcctgctactcgggagactgaggcacgagaatcacttgaacccaggaggtggaggttgctgtgagctgagattgcaccactgcactccagcctgggtgacacagcaaaactccatttcaaaaaaaaaaaaaaaaaGGGTGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417720 175 +  50472720 aaccccatctctactaaaaaaaatataaaaattagctgggtgtggtggcttgtgcctgtagttccagctactcaggagactgaggcacgagaatcacttcaacccaggaggcagaggttgcagtgagctgag----------tgcactccagcctgggtggcagagtgaaact--------GAAAAGGAAAAA----------
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91557602 210 +  98207768 I
e canFam3.chr31              28035036 315 +  39895921 I

a score=163697.000000
s hg38.chr21_GL383581v2_alt     15926 53 +    116689 GGGGGAACTGTATGGTACATATAAATTGTATCTCAATAAACCTGCGTTTTGAA
s panTro4.chr21              19519609 53 +  32799110 GGGGGAACTGTATGGTACATATAAATTGTATCTCAATAAACCTGTGTTTTGAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415510 53 +  48394510 GGAGGAACCATATGGTATATATAAATTGTATCTCAATAAACCTGTGTTTTGAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19946981 53 +  32716333 GGGGAAACTGTATGGTATATATAAATTGTATCTCAATAAACCTGTGTTTTGAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113399 53 - 198365852 GGGGGAACTGTGGAGTATATATAAATTGTATCTCAATAAACCTGTGTTTTGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954788 53 - 192294377 GGGGGAACTGTGGAGTATATATAAATTGTATCTCAATAAACCTGTGTTTTGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167335102 53 - 180432695 ggggGAACTGTGGAGTATAtataaattgtatctcaataaaccTGTGTTTTGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31611975 53 -  90373283 AGGGGAACTGTGGAGTATATATAAATTGTATCTCAATAAACCTGTGTTTTGAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417895 45 +  50472720 --------TGTGTGGTATATATAAATTGTATTTCAATAAAACTGTGTTTTGAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28035351 51 +  39895921 gagtgagttatttggtctgcac--actgtatctcagtaaagcttcttttttaa
i canFam3.chr31             I 315 C 0
e mm10.chr16                 91557602 210 +  98207768 I

a score=1086677.000000
s hg38.chr21_GL383581v2_alt     15979 303 +    116689 CAAA-----AGCTCTGGGGAA-ACTATTACAC-------------------------------------------------------------ATGAAAC---AGAGAATTCTGTGAATTGAAATCC-TTTTTTCCTTCCCAGCACC---GACAGTAAATGG------TTCACGGCCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCCGCCAGTCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCTGAGCTGGGAGCACTCCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACTTGAGTATAGAACTT
s panTro4.chr21              19519662 303 +  32799110 CAAA-----AGCTCTGGGGAA-ACTATTACAC-------------------------------------------------------------ATGAAAC---AGAGAATTCTGTGAATTGAAATCC-TTTTTTCCTTCCCAGCACC---GACAGTAAATGG------TTCATGGCCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCTGCCAGTCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCTGAGCTGGGAGCACTCCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACTTGAGTATAGAACTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415563 306 +  48394510 CAAA-----AGCTCTGGGGAA-ACTATTACAC-------------------------------------------------------------ATGAAACAG-AGAGAATTCTGTGAATTGAAATCCTTTTTTTCCTTCCCAGCACC---GACAGTAAATGG------TTCATGGCCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAACAACAGAGTGTGACTTCACTGCCGCCACTTCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCTGAGCTGGGAGCACTCCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACTTGGGTGTAGAACTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19947034 303 +  32716333 CAAA-----AGCTCTGGGGAA-ACTATTACAC-------------------------------------------------------------ATGAAAC---AGAGAATTCTGTGAATTGAAATCC-TTTTTTCCTTCCCAGCACC---GACAGTAAATGG------TTCATGGCTGACATCATGTCCATAGGAGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCTGCCAGTCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCTGAGCTGGGAGCACTCCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACTTGGGTATAGAACTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113452 305 - 198365852 CAAA-----AGCTCTGGGGAA-ACTGTTACAC-------------------------------------------------------------ATAAAGCAG-AGGGAATTCTGTGAATTGAAATCC-TTTTTTCCTTCCCAGCACC---GATAGTGAATGG------TTCATGACCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCCGCCAGCCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTGCGTCTTCGAGCTGAGCTGGGAGCACTGCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACGTGGGTATGGAACTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178954841 305 - 192294377 CAAA-----AGCTCTGGGGAA-ACTGTTACAC-------------------------------------------------------------ATAAAGCAG-AGGGAATTCTGTGAATTGAAATCC-TTTTTTCCTTCCCAGCACC---GATAGTGAATGG------TTCATGACCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCCGCCAGCCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTGCGTCTTCGAGCTGAGCTGGGAGCACTGCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACGTGGGTATGGAACTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167335155 305 - 180432695 CAAA-----AGCTCTGGGGAA-ACTGTTACAC-------------------------------------------------------------ATAAAGCAG-AGGGAATTCTGTGAATTGaaatcc-ttttttccttcccagcACC---GATAGTGAATGG------TTCATGACCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCCGCCAGCCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTACGTCTTCGAGCTGAGCTGGGAGCACTGCattctgcctgggtgacaatgcCTTGGTTTCAACACTATCGGAATG----GTAAGAG-------------------AACTTGGGTGTGGAACTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31612028 324 -  90373283 CAAA-----AGCTCTGGGGAA-ACTGTTACAC-------------------------------------------------------------ATAAAGCAG-AGGGAATTCTGTGAATTGAAATCC-TTTTTTCCTTCCCAGCACC---GATAGTGAATGG------TTCATGACCGACATCATGTCCATAGGGGTGAATTGTACACAGATCACAGCAACAGAGTGTGACTTCACTGCCGCCAGCCCCTCAGCAGGCTTCCCAATGGATTTCAATGTCACTCTACGTCTTCGAGCTGAGCTGGGAGCACTGCATTCTGCCTGGGTGACAATGCCTTGGTTTCAACACTATCGGAATG----GTAAGAGAACTTGGGTATGGAAAGATAACTTGGGTATGGAACTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37417940 364 +  50472720 CAAA-----AGCTCTGGGGAA-ACTGCCACATGAAGCAGAGAATCCTCAAACTCACCCTTGCCagggaaaggaaaggaaaagaaaaaaagaaaaagaaGCAG-AGAGAATTCTGTAAGTTGAAATCCTTTTTTTCCTTCCCAGCAGC---GGTGATGAGTGG------CTGACGATGGA---CACGTCCATAGGGGTGAATTGTACGCAGATCACAGCAACAGAGTGTGACTTCACTGCCGCCAGCCCCTCAGCGGGCTTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCAGAGCTGGGAGCACTCCATTCTGCCTGGGTGACAATGCCTTGGTTTCAGCACTATCGGAATG----GTAAGAG-------------------AACTTGGGAATAGAACTT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91557812 291 +  98207768 TAAT-----GTCTCTAGAGAACAGGGTTACTC-------------------------------------------------------------GCGAAG----AGAGAATTCTGTGAGCTGAGATCT-TGTTTTCCCTCCCAGCATC---G-------ATGG------CTCTTGGCA-----TAGGTTGCTGGAGCCGAACTGTACGGACATCACAGAGACAAAGTGTGACTTAACAGGAGGCGGCCGCTTGAAGCTTTTCCCACACCCATTCACAGTCTTCCTGCGGGTGCGAGCCAAGCGAGGGAACCTCACTTCCAAGTGGGTGGGGCTGGAGCCATTTCAACACTATGAGAATG----GTAAGAG-------------------AACGTGGGAAGAAAGCTT
i mm10.chr16                I 210 I 1817
s canFam3.chr31              28035402 318 +  39895921 -aaaaAATCAGCTCTGGGGGA-ACTGTTGTGT-------------------------------------------------------------GTGGGAGAACAGAGAATTCTGTGAAGTGAAGGCCTTTCTTTCCCTTCCAGCGCCTCTGGCAGTCAGTGGTACGACTTCAGTGTGGACAGCA------TAGGTGTGAACTGTATGAACATCACCACGATGGAGTGTGACTTCACCCCAACCAGCCCTTCACAGGAGTTCCTACCACACTTAAACGTCTCCTTGCGCGTCCGAGCTAAGGTGGGAGACCTGGTTTCCACCTGGGTCAGAGTGCCATGGTTCCAGTACCTTAGGAATGGTAAGTAAGAG-------------------AACGTGGCTGTGAAACTT
i canFam3.chr31             C 0 C 0

a score=761398.000000
s hg38.chr21_GL383581v2_alt     16282 216 +    116689 CCTTTATACTTTCCAGGTTTTCTTCACTT-------------GCGGTATCGACTCCACACACCTCTGTCCTGCCTGTCACCCTAAATGACCAGCAGACAAATGGGTAGGACAGTCAAACCCACACTCTGACCTTGGAGGCTGATGCTAAGGGAGTGTGATTTGCTAAACcaggggttggccaactacagcctgcaggccaaatcgggcccacc-acttgtttttgtaaat
s panTro4.chr21              19519965 216 +  32799110 CCTTTATACTTTCCAGGTTTTCTTCACTT-------------GCAGTATTGACTCCACACACCTCTGTCCTGCCTGTCACCCTAAATGACCAGCAGACAAATGGGTAGGACAGTCAAACCCACACTCTGACCTTGGAGGCTGATGCTAAGGGAGTGTGATTTGCTAAACcaggggttggccaactacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34415869 216 +  48394510 CCTTTACACTTTCCAGGTTTTCTTCACTT-------------GCAGTATCGACTCCACACAGCTCTGTCCTGCATCTCACCCTAAATGACCAGCAGACAAATGGGTAGGACGGTCAAACCCACACTCTGACCTTGGAGGCTGATGCTAAGGGAGTGTGATTTGCTAAACcaggggttggccaactacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19947337 216 +  32716333 CCTTTGTACTTTCCAGGTTTTCTTCACTT-------------GCAGTATCAACTCCACACACCTCTGTCCTGCCTCTCACCCTAAATGTCCAGCAGACAGATGGGTAGGACGGTCAAACCCACACTCTGACCTTGGAAGCTAATGCTAAGGGAGTGTGATTTGCTAAACcaggggttggccaactacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185113757 216 - 198365852 CCTTTATACTTTCCAGGTTTTTTTCACTT-------------GCAGTATTGACTCCACACACCTCTGTTCTGCCTCTCATCCTAAATGACCAGCAGACAAAGGGATAGCATGGTCAAACCCACACTCTGATGTTGGAGTCCGATGCTAGGAGAGTATGATTTGCTAAACcaggggttggccagctacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i rheMac3.chr3              C 0 I 315
s macFas5.chr3              178955146 216 - 192294377 CCTTTATACTTTCCAGGTTTTTTTCACTT-------------GCAGTATTGACTCCACACACCTCTGTTCTGCCTCTCATCCTAAATGACCAGCAGACAAAGGGATAGCATGGTCAAACCCACACTCTGATGTTGGAGTCCGATGCTAGGAGAGTATGATTTGCTAAACcagaggttggccagctacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i macFas5.chr3              C 0 I 322
s papAnu2.chr3              167335460 216 - 180432695 CCTTTATACTTTCCAGGtttttttCACTC-------------GCAGTATTGACTCCACACACCTCTGTTCTGCCTCTCATCCTAAATGACCAGCAGACAAAAGGATAGCATGGTCAAACCCACACTCTGATGTTGGAGTCTGATGCTAGGGGAGTATGATTTGCTAAACCAGGGGTTGGCCAGCTACAGCctgcaggccaaatctggcccacc-acttgtttttgtaaat
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31612352 216 -  90373283 CCTTTATACTTTCCAGGTTTTTTTCACTT-------------GCAGTATTGACTCCACACACCTCTGTTCTGCCTCTCATCCTAAATGACCAGCAGACAAAGGGATAGCATGGTCAAACCCACACTCTGATGTTGGAGTCTGATGCTAGGGGAGTATGATTTGCTAAACcaggggttggccagctacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37418304 216 +  50472720 CCTTTAAACTTTCCAGGTTTTCTTCACTT-------------GCAGTATCAACTTCACACACCTCTGTCCTGCCTCTCACCCTAAATGACCAGCAGACAAATGGATAGGATGGTCATACCCACACTCTGACCTTAGAGGCTGATGCTAGTGGAGTGTGATTTGCTAAACcagaggttggccaactacagcctgcaggccaaatctggcccacc-acttgtttttgtaaat
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28035720 230 +  39895921 CCTTTATCCTTTCCAGGCTTTCTTCACTTTACTCCTCACTGAGCAGCCTGGACTCCATGCCCCTCCGTCCTGTCCCTCACCCCACACAGCCAGCAAACCGGTGGGGATGATGGTCCAACCCGAGTACTGACCATGGAGGCTGGCACTAGAGGAGTGTGATTTGCTAGCCcagagtctggcaagccacggcctgcgggccacgtccggcccgccaacctgttgttgtaaat
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I

a score=1853285.000000
s hg38.chr21_GL383581v2_alt     16498 581 +    116689  
s panTro4.chr21              19520181 580 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34416085 584 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19947553 581 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185114288 582 - 198365852  
i rheMac3.chr3              I 315 C 0
s macFas5.chr3              178955684 582 - 192294377  
i macFas5.chr3              I 322 C 0
s papAnu2.chr3              167335676 582 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31612568 582 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37418520 513 +  50472720  
i calJac3.chr21             C 0 I 1706
s canFam3.chr31              28035950 590 +  39895921  
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I

a score=24844.000000
s hg38.chr21_GL383581v2_alt     17079 10 +    116689 -aa--ggaggagg
s panTro4.chr21              19520761 10 +  32799110 -aa--gggggagg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34416669 10 +  48394510 -aa--GGGGGAGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19948134 10 +  32716333 -aa--ggggGAGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185114870 10 - 198365852 -aa--ggggGAGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178956266 10 - 192294377 -aa--ggggGAGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167336258 10 - 180432695 -AA--GGGGGAGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31613150 12 -  90373283 -aaggggGGGAGG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28036540 10 +  39895921 taa--ggggggg-
i canFam3.chr31             C 0 I 292
e mm10.chr16                 91558103 1817 +  98207768 I
e calJac3.chr21              37419033 1706 +  50472720 I

a score=556375.000000
s hg38.chr21_GL383581v2_alt     17089 232 +    116689 aggtctggttaagatgttaaagtttatgttatgtgtatttt-accacaataaaaaattgggggaataaaaagagttcctgctgggcgcggtggctcacgcctataatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaacacaaaaattagctggatgtggtggtgcat
s panTro4.chr21              19520771 232 +  32799110 aggtctggttaagatgttaaagtttatgttatgtgtatttt-accacaataaaaaattgggggaataaaaagagttcctgccgggcgcggtggctcacgcctatgatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaacacaaaaattagctggatgtggtggtgcat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34416679 232 +  48394510 TGGTCtggttaagatgttaaagtttatgttatgtgtatttt-accacaataaaaaaTTGGGGGAATAAAAAGAGTTCCTgccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctggatgtggtggtgcat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19948144 232 +  32716333 TGGTCtggttaagatgttaaagtttatgttatgtgtatttt-accacaataaaaaaTTGGGGGAATAAAAAGAGTTCCTgccaggcatggtggctcacgcctgtaatcccggcactttgggaggccgaggcaggcagatcacttgaggttaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagctggatgtggtggtgcat
i nomLeu3.chr25             C 0 I 394
s rheMac3.chr3              185114880 233 - 198365852 TATTCtggttaagatgttaaagtttatgttatgtgtattttaaccaaaataaaaaaTTGGGGGAATAAAAAGGGTTCCTgctgggtgcggtggctcacgtctataatcttggcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaattagctgggcttggtggtgcgt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178956276 233 - 192294377 TATTCtggttaagatgttaaagtttatgttatgtgtattttaaccaaaataaaaaaTTGGGGGAATAAAAAGGGTTCCAgctgggtgcggtggctcacgtctataatcttggcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaattagctgggcttggtggtgcat
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167336268 233 - 180432695 TATTCTGGTTGAGATGTTAAAGtttatgttgtgtgtattttaaccaaaataaaaaattgggggAATAAAAAGGGTtcctgccaggtgcggtggctcacgtctgtaatcttggcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaattagctgggcttggtggtgcgt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31613162 233 -  90373283 TATTCtggttaagacgttaaagtttatgttatgtgtattttaaccaaaataaaaaaTTGGGGGAATAAAAAGGGTTCCTgccgggtacggtggctcacatctgtaatcttggcactttgggaggccgaagcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaattagctggacttggtggtgcat
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e calJac3.chr21              37419033 1706 +  50472720 I

a score=227699.000000
s hg38.chr21_GL383581v2_alt     17321 110 +    116689 acctgtaatcccagctacttgggaagctgaggtaggagaatcgcttgaacc-ggggaggcagaggttgtggtgagctgagattgcaccattgcactccagcctgggcaac--a
s panTro4.chr21              19521003 111 +  32799110 acctgtaatcccagctacttgggaagctgaggcaggagaatcgcttgaaccgggggaggcggaggttgtggtgagctgagattgcaccattgcactccagcctgggcaac--a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34416911 109 +  48394510 acctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacc-cgggaggcggaggttgcagtgagccaagatcacatcactgcactccagcctgggcgac---
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19948770 110 +  32716333 acctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacc-aggggggcagaggttgtggtgagccgagattgcaccattgcactccagcctgggcaac--a
i nomLeu3.chr25             I 394 C 0
s rheMac3.chr3              185115113 110 - 198365852 gcctataatcccacctccttgagaggacaaggcaggagaatcacttgaacc-cgggaggcagaggttgcagtgagcccagatcacatcactgcactccaacctgagcaaca--
i rheMac3.chr3              C 0 I 1270
s macFas5.chr3              178956509 109 - 192294377 gcctataatcccacctacttgagaggccaaggcaggagaatcacttgaacc-cgggaggcagaggttgcagtgagcccagatcacatcactgcactccaacctgagcaac---
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167336501 109 - 180432695 gcctataatcccacctacttgagaggccaaggcaggagaatcacttgaacc-cgggaggcagaggttgcagtgagccaagatcacatcactgcactccaacctgagcaac---
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31613395 110 -  90373283 gcctataatcccacctacttgagaggccaaggcaggagaatcacttgaacc-cgggaggcagaggttgcagtgagccaagatcacatcactgcactccaatctgagcaac-a-
i chlSab2.chr2              C 0 I 1266
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e calJac3.chr21              37419033 1706 +  50472720 I

a score=23876.000000
s hg38.chr21_GL383581v2_alt     17431 37 +    116689 agagtgaaactccatctcaaaaaaaaaaaaaaaaaaa
s panTro4.chr21              19521114 26 +  32799110 agagtgaaactccatctc-----------aaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417020 37 +  48394510 agagcaagaccctgtctcaaaaaaaaaataaaaaata
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19948880 31 +  32716333 agagtgaaactccatttcaaaaa------aaaaaaaa
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178956618 37 - 192294377 agagcaagactcagtctcaaaaaaacaaagttaaaaa
i macFas5.chr3              C 0 I 759
s papAnu2.chr3              167336610 37 - 180432695 agagcaagactcagtctcaaaaaaacaaagttaaaaa
i papAnu2.chr3              C 0 I 759
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I

a score=279.000000
s hg38.chr21_GL383581v2_alt     17468 4 +    116689 aaaa-
s panTro4.chr21              19521140 4 +  32799110 aaaa-
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417057 4 +  48394510 aaaa-
i ponAbe2.chr21             C 0 I 490
s nomLeu3.chr25              19948911 5 +  32716333 caaat
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I
e papAnu2.chr3              167336647 759 - 180432695 I
e macFas5.chr3              178956655 759 - 192294377 I

a score=56504.000000
s hg38.chr21_GL383581v2_alt     17472 221 +    116689 aagcaaaataatccaaagaacaggagggacaaggacaaagcttccaggcatagaagaaacaaaattggccataagttgacagttgattcagttgggtaattagtacatgagtgtttgttaatgatcttccctctac------tttttttttttttttttttttgagacggagtctctctctcttgcccaggctggagtgcagtggcgcaatcttggctcactgcaag
s panTro4.chr21              19521144 227 +  32799110 aagcaaaataatccaaagaacaggagggacaaggacaaagcttccaggcatagaagaaacaaaattggccataagttgacagttgattcagttgggtaattagtacatgagtgtttgttaatgatcttccctctaccttttttttttttttttttttttttttgagatggagtctctctctcttgcccaggctggagtgcagtggtgcaatcttggctcactgcaag
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19948916 217 +  32716333 ---caaaataatccagagaacaggagggacaaggacaaagcttccaggcgtagaagaaacaaaattggccataagttgacggttgattcagttgggtaatgagtacatgagtgtttgttaatgatcttctctctgc-------atttttttttttttttttttgagatggagtctcgctctgttgcccaggctggagtgcagtggcgcgatcttggctcactgcaag
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e ponAbe2.chr21              34417061 490 +  48394510 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I
e papAnu2.chr3              167336647 759 - 180432695 I
e macFas5.chr3              178956655 759 - 192294377 I

a score=77629.000000
s hg38.chr21_GL383581v2_alt     17693 135 +    116689 ctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacacccggctaa-------------------------------------------------------------ttttttgtattttta-------gtagagatggggtttcaccatgttagccaggatgg
s panTro4.chr21              19521371 135 +  32799110 ctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacacccggctaa-------------------------------------------------------------ttttttgtattttta-------gtagagatggggtttcaccgtgttagccaggatgg
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19949133 135 +  32716333 ctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggaatacaggtgcccgccaccacacccggctaa-------------------------------------------------------------ttttttgtattttta-------gtagagacggggcttcaccgtgttagccaggatgg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178957414 198 - 192294377 ctcgatctcctgacctcatg--atctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggccaa---tctactttctatgtgtttgaaattttctgtaataaaaagttTTTTGTTGTTGTTGGGtttttttgtgtttttgtttttgttttgagatggaatctcgctctgtcacccaggctgg
i macFas5.chr3              I 759 I 15
s papAnu2.chr3              167337406 201 - 180432695 ctcgatctcctgacctcatg--atctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggccaatctTCTACTTTCtatgtgtttgaaattttctgtaataaaaagttttttgttgttgttgggtttttttgtgtttttgtttttgttttgagatggaatctcgctctgtcacccaggctgg
i papAnu2.chr3              I 759 I 51
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e ponAbe2.chr21              34417061 490 +  48394510 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I

a score=3670.000000
s hg38.chr21_GL383581v2_alt     17828 18 +    116689 tcttgaactcctg--------acctt
s panTro4.chr21              19521506 18 +  32799110 tcttgatttcctg--------acctc
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19949268 18 +  32716333 tctcaatctcgtg--------acctc
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178957627 26 - 192294377 tctcggctcactgcaagctccacctc
i macFas5.chr3              I 15 I 10
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e ponAbe2.chr21              34417061 490 +  48394510 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I
e papAnu2.chr3              167337607 51 - 180432695 I

a score=68366.000000
s hg38.chr21_GL383581v2_alt     17846 132 +    116689 gtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccagcctatcttctctctactttctatgtgtttgaaattttctgtaataaaaagtttttttttgttgttgttgt
s panTro4.chr21              19521524 132 +  32799110 gtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggcctatcttctctctactttctatgtgtttgaaattttctgtaataaaaagttttttgttgtcgttgttgt
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19949286 131 +  32716333 gtgatctgcccgcttcggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggccgatcttctctctactttctatgtgtttgaaattttctgtaataaaaagtttgtt-ttgttgttgttgt
i nomLeu3.chr25             C 0 I 2
s macFas5.chr3              178957663 109 - 192294377 gtgattctcctccctcagcctcccaagtagctgggactacaggtctgtgccaccatgcctggctaatCCTGGCTA-ATTTTTTGTTTGttt----------------------ttgttgttgttgttgttgt
i macFas5.chr3              I 10 I 2
s papAnu2.chr3              167337658 106 - 180432695 gtgattctcctccctcagcctcccaagcagctgggactacaggtctgtgccaccacgcctggctaatcctggcta-attttttgtttgttt-------------------------ttgttgttgttgttgt
i papAnu2.chr3              I 51 I 2
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e ponAbe2.chr21              34417061 490 +  48394510 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I

a score=108943.000000
s hg38.chr21_GL383581v2_alt     17978 113 +    116689 ttttgaggtggagtcttgcactgtcgcccaggct-ggcgtgcagtggtgcagtctcggctcactgcaacctctgcctcctgggttcaagtgattctccctcccgggttcaagtg
s panTro4.chr21              19521656 113 +  32799110 ttttgagatggagtcttgcactgtcgcccaggct-ggagtgcagtggtgcagtctcggctcactgcaacctctgcctcctgggttcaagtgattctccctcccgggttcaagtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417551 104 +  48394510 ttttgagatggagtcttgcactgtcgcccaggctgggagtgcagtggcgcaatctcggctcactgcaacctctacgtcctgggttcaagtgattctccctcc----------tc
i ponAbe2.chr21             I 490 C 0
s nomLeu3.chr25              19949419 103 +  32716333 ttttgagatggagtgttgcactgtcgcccaggct-ggagtgcagtggcgcgacctcagctcactgcaacctctgcctcccgggttcaagtgattctccctcc----------tc
i nomLeu3.chr25             I 2 C 0
s macFas5.chr3              178957774 103 - 192294377 ttttgagacagagtcccgctctgttgcccaggct-ggagtgcagtggcacaatctcggctcactacaagctctacctcccgagttcacaccattctcctgcc----------tc
i macFas5.chr3              I 2 C 0
s papAnu2.chr3              167337766 103 - 180432695 ttttgagacggagtcccgctctgttgcccaggct-ggagtgcagtggcacggtctcggctcactacaagctctacctcccgagatcacaccattctcctgcc----------tc
i papAnu2.chr3              I 2 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e rheMac3.chr3              185115223 1270 - 198365852 I
e calJac3.chr21              37419033 1706 +  50472720 I
e chlSab2.chr2               31613505 1266 -  90373283 I

a score=445607.000000
s hg38.chr21_GL383581v2_alt     18091 208 +    116689 agcctcccaagtagctgggactacaggtgcacgccactatgcccgtc-taattttttgtatttttagtagagacgggatttcaccatg-ttgtccaggctggcctctaactcctgacctcgtgatccgcccatctcagcctcccaaagtgctaggattacaggcgtgagagccaccgtgcccggccAATAAAAAG-TTTTTTAGAGAggat
s panTro4.chr21              19521769 209 +  32799110 agcctcccaagtagctgggactgcaggcacacgccactatgcccgtcttaattttttgtatttttagtagagacgggatttcaccatg-ttgtccaggctggcctctaacccctgacctcgtgatccgcccatctcagcctcccaaagtgctgggattacaggtgtgagagccaccgtgcccggccAATAAAAAG-TTTTTTAGAGAgggt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417655 208 +  48394510 agcctcccaagtagctgggaccacaggcgcacgccactatgcctgtc-taatttttta-atttttggtagagatgaggtcttgctatgtttgtccaggctggcctctaactcctgacctcgtgatccacccatctcagcctcccaaagtgctgggattacaggcgtgagagccactgtgcccagccAATAAAAAG-TTTTTTAGAGAgggt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19949522 208 +  32716333 agcctcccgagtagctgggactacaggcacccaccaccatgcccagc-taattttttgtatttttagcagagacgagatttcaccatg-ttgtccaggctggtctcgaactcctgacctcatgatcctctcgcctcagcctcccaaagtgctgggattacaggcatgagagccaccgtgcccggccAATAAAAAG-TTTTTTAGAAAgggt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185116493 207 - 198365852 agcctcccgagtatctgggactacaggtgcctgccaccatgcccggc-taattttttgtatttttagtagagacggggtttcaccatg-ttagccaggatggtcttgatctcctgacctcatgatccacctgcctcggcctcccaaagtgctgggattaccggtgt--gagccaccatgcccggccAATAAAAAGTTTTTTTAGAGAggct
i rheMac3.chr3              I 1270 C 0
s macFas5.chr3              178957877 207 - 192294377 agcctcccgagtatctgggactacaggtgcccgccaccatgcccggc-taattttttgtatttttagtagagacggggtttcaccatg-ttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggtgt--gagccaccatgcccggccAATAAAAAGTTTTTTTAGAGAggct
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167337869 207 - 180432695 agcctcccgagtatctgggactacaggtgcccgccaccatgcccggc-taattttttgtatttttagtagagacggggtttcaccatg-ttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggtgt--gagccaccatgcccggccaataaaaagtttttttagagaggct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31614771 206 -  90373283 agcctcccaagtatctgggactacaggtgcccgccaccacgcctggc-taattttttgtatttttagtagagacggggtttcaccatg-ttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggtat--gagccaccacgcccggccAATAAAAAG-TGTTTTAGAGAggct
i chlSab2.chr2              I 1266 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e calJac3.chr21              37419033 1706 +  50472720 I

a score=179598.000000
s hg38.chr21_GL383581v2_alt     18299 60 +    116689 catgcctgtaatcttagcccattgggaggctgaggtgggaggatcgcttgagctcaggag
s panTro4.chr21              19521978 60 +  32799110 catgcctgtaatcttagcccattgggaggctgaggtgggaggatcgcttgagctcaggag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417863 60 +  48394510 catgcctgtaatcttagcccattgggaggctgaggtgggaggatcgcttgagctcaggag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19949730 60 +  32716333 catgcctgtaatcttagcccattgggaggctgaggtgggaggatcgcttgagctcaggag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185116700 60 - 198365852 catgcctgtgatcttagcccattgggaggctgagatgggaggattgcttgagatcaggag
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178958084 60 - 192294377 catgcctgtgatcttagcccattgggaggctgagatgggaggattgcttgagctcaggag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167338076 60 - 180432695 catgcctgtgatcttagcccattgggaggctgagatgggaggattgcttgagctcaggag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31614977 60 -  90373283 tgtgcctgtgatcttagcccactgggaggctgagatgggaggattgcttgagctcaggag
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37420739 60 +  50472720 catgcctgcaatcccagctattcaggaggctgaggcaggagaattgcctgaacccaggag
i calJac3.chr21             I 1706 I 40
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I

a score=19901.000000
s hg38.chr21_GL383581v2_alt     18359 9 +    116689 ttcaagatg
s panTro4.chr21              19522038 9 +  32799110 ttcaagatg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417923 9 +  48394510 ttcaagatg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19949790 9 +  32716333 agcaagacg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185116760 9 - 198365852 ttcaagatg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178958144 9 - 192294377 ttcaagatg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167338136 9 - 180432695 ttcaagatg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31615037 9 -  90373283 ttcaagatg
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I
e calJac3.chr21              37420799 40 +  50472720 I

a score=75778.000000
s hg38.chr21_GL383581v2_alt     18368 47 +    116689 agcctggggaata-tagcaagaccccatctc----------------taT-TTTTTTTTTTTTTT
s panTro4.chr21              19522047 54 +  32799110 agcctggggaaca-tagcaagaccccatctc-------tttt--tttttt-tttttttttttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417932 61 +  48394510 agcctggggaaca-tagcaagatcccatctctattttttttg--ttttgt-tttgttttgttttA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19949799 63 +  32716333 aacctggggaaca-tagcaagaccccatctctatttttttttaagttttt-tttttttttttttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185116769 59 - 198365852 agcctagggaaca-tagcaagaccccatctcta--ttttttt--tttaag-tttttttttttaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178958153 60 - 192294377 agcctagggaaca-tagcaagaccccatctcta-tttttttt--tttaag-tttttttttttttA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167338145 60 - 180432695 agcctagggaaca-tagcaagaccccatctcta--ttttttt--tttaagtttttttttttttta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31615046 53 -  90373283 agcctagggaaca-tagcaagaccccatcgcta----TTTTT--TTTAAG-TTTTTTTTT----A
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37420839 49 +  50472720 agcctgggtaacaggagcgaaactccgtctcaaaaaaaaaaa--aaaaaa--------------a
i calJac3.chr21             I 40 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036550 292 +  39895921 I

a score=496641.000000
s hg38.chr21_GL383581v2_alt     18415 152 +    116689 AATCAGTGGTTTGTGCTAGGTACTGTGAGGGACAGAAACAGAGAAGACAGGGCAATCCTGCCAGCTCCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTGCCAAACCACCCTCCATTTGAGCTATAAAGTGTCAAATAAGT-GGGAATTA
s panTro4.chr21              19522101 152 +  32799110 AATCAGTGGTTTGTGCTAGGTGCTGTGAGGGACAGAAACAGAGAAGACAGGGCAATCCTGCCAGCTCCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTGCCAAACCACCCTCCATTTGAGCTATAAAGTGTCGAATAAGT-GGGAATTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34417993 153 +  48394510 AATCAGTGGTTTGTGCTAGGTGCTGTGAGGGACAGAAACAGAGAAGACAGGGCAGTCCTGCTGGCTCCTCATCTGCTGTGGACAAGCCATTTGTCCTTGGGTGCCAAACCACCCTCCATTTGAGCTATAAAGTGTCAAATAAGTGGGGAATTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19949862 152 +  32716333 AATCAGTGGTTTGTGCTAGGTGCTGTGAGGGACAGAAACAGAGAACACAGGGCGGTCCTGCTGGCTCCTTGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTGCTAAACCACCCTCCATTTGAGCTATAAAGTGTCAAATAAGT-GGGAATTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185116828 152 - 198365852 aatCAGTGGTTTGTGCTAGGTGCTGTGAGGGATAGAAACAGAGAAGACCAGGCAGTCCTGCTGGTTCCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTACAGAACCACCCCCCATTTGAGCTATAAAGTGTCAAATAAGT-GGGAATTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178958213 152 - 192294377 AATCAGTGGTTTGTGCTAGGTGCTGTGAGGGATAGAAACAGAGAAGACCAGGCAGTCCTGCTGGTTCCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTACAGAACCACCCCCCATTTGAGCTATAAAGTGTCAAATAAGT-GGGAATTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167338205 152 - 180432695 aatcagtggttTGTGCTAGGTGCTATGAGGGATAGAAACAGAGAAGACCAGGCAGTCCTGCTGGTTCCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTACAGAACCACCCCCCATTTGAGCTATAAAGTGTCAAATAAGT-GGGAATTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31615099 152 -  90373283 AATCAGTGGTTTGTGCTAGGTGCTGTGAGGGATAGAAACAGAGAAGACCAGGCAGTCCTGCTGGCTCCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGGTACAGAACCACCCCCCATTTGAGCTATAAAGTGTCAAATAAGT-GGGAATTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37420888 150 +  50472720 aaTCAGTGGTTGATGCTAGGTTCTGTGAGGGACAGAAGCAGAT--GACAGGGCAGTCCTGTTGGCTTCTCGTCTGCTGTGGACAAGCCATTTGTCCTTGGTTAGAGAACCTGCCCCTGCTTGAGCTATAGAGTATCTAATACAT-GGGAATTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28036842 132 +  39895921 AATCAACGGTTTGTGCCAAATGATGC-AGGGATGGAA--AGAGAAGACAGG-----------------TCATTTACTACAGACAAGTCGTTTGTCCTCGAGTAGAGGACCAGCACACGTCTGAGCTATGAAATGTCACCTCGGT-GGCAATTA
i canFam3.chr31             I 292 C 0
e mm10.chr16                 91558103 1817 +  98207768 I

a score=308262.000000
s hg38.chr21_GL383581v2_alt     18567 115 +    116689 GGAGTATGCAAACAAGTAAT-GATggctgggcgcagtggctcacccctgcaatcccagcactttgggaagctgaggc-aggcagatcat-ctgtggtcaggagttcaagaccagtctg
s panTro4.chr21              19522253 115 +  32799110 GAAGTATGCAAACAAGTAAT-GATggctgggcgcggtggctcacccctgcaatcccagcactttgggaagctgaggc-aggcagatcat-ctgtggtcaggagttcaagaccagtctg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34418146 118 +  48394510 GGAGTATGCAAAGAAGTAATGGATggctgggcgcagtggctcaaccctgccatcccagcaccttgggagactgaggcggggcggatcatcctgtggtcgggagttcgagaccaattcg
i ponAbe2.chr21             C 0 I 297
s nomLeu3.chr25              19950014 115 +  32716333 GGAGTATGCAAAGAAGTAAG-GATggctgggtgcggtggctcacccctgcaatcccagcactttgggaagctgaggc-aggcagatcac-ctgtggtcaggagtttgagaccagtctg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185116980 110 - 198365852 GGAGTATG-----AAGTAAT-GATggccgggcacagtggctcacccctgcagtcccagcactttgggaggctgaggc-aggcagatcat-ctgaggttaggagttcgagaccagcctg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178958365 110 - 192294377 GGAGTATG-----AAGTAAT-GATggccgggcacagtggctcacccctgcagtcccagcactttgggaggctgaggc-aggcagatcat-ctgaggttaggagttcgagaccagcctg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167338357 110 - 180432695 GGAGTATG-----AAGTAat-gatggccgggcacagtggctcacccctgcagtcccagcactttgggaggctgaggc-aggcagatcat-ctgaggttaggagttcgagaccagcctg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31615251 110 -  90373283 GGAGTATG-----AAGTAAT-GATggccgggcacagtggctcacccctgcagtcccagcactttgggaggctgaggc-aggcagatcat-ctgaggtcaggagttcgagaccagcctg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37421038 115 +  50472720 GGGGTATGAAAAGGAGTAAT-GATggccaggtgtggtggctaacccctgtaatcccagcacttggggaaactgaagc-gggcagatcat-ctgtggtcaggagttggagaccagcctg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036974   0 +  39895921 C

a score=30842.000000
s hg38.chr21_GL383581v2_alt     18682 12 +    116689 gccaacatggtg
s panTro4.chr21              19522368 12 +  32799110 gccaacatggtg
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19950129 12 +  32716333 gccaacatggtg
i nomLeu3.chr25             C 0 I 1
s rheMac3.chr3              185117090 12 - 198365852 gccaacatggtg
i rheMac3.chr3              C 0 I 1
s macFas5.chr3              178958475 12 - 192294377 gccaacatggtg
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167338467 12 - 180432695 gccaacatggtg
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31615361 12 -  90373283 gccaacatggtg
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37421153 12 +  50472720 tccaacatggtg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036974  0 +  39895921 C
e ponAbe2.chr21              34418264 297 +  48394510 I

a score=27742.000000
s hg38.chr21_GL383581v2_alt     18694 16 +    116689 ---------------aaacccca---tctctact-
s panTro4.chr21              19522380 16 +  32799110 ---------------aaatccca---tctctact-
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34418561 17 +  48394510 ---------------aaacccca---tctttacta
i ponAbe2.chr21             I 297 C 0
s nomLeu3.chr25              19950142 16 +  32716333 ---------------aaccccca---tctttact-
i nomLeu3.chr25             I 1 C 0
s rheMac3.chr3              185117103 16 - 198365852 ---------------aaccccca---tgtctact-
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              178958488 16 - 192294377 ---------------aaccccca---tgtctact-
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167338480 16 - 180432695 ---------------aaccccca---tctctact-
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31615374 16 -  90373283 ---------------aaccccca---tctctact-
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37421165 34 +  50472720 aaactaaaaatacaaaaatacaaaatactctact-
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28036974  0 +  39895921 C

a score=1693916.000000
s hg38.chr21_GL383581v2_alt     18710 590 +    116689  
s panTro4.chr21              19522396 584 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34418578 598 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19950158 597 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185117119 624 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178958504 624 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167338496 623 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31615390 624 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37421199 586 +  50472720  
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28036974 435 +  39895921  
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I

a score=207126.000000
s hg38.chr21_GL383581v2_alt     19300 75 +    116689 CCTTAtttg-----tttttttgttttgtttt---gttttttgagacagtctcgctctgtcgcccaggctggagtgcagtggag
s panTro4.chr21              19522980 75 +  32799110 CCTTAtttg-----tttttttgttttgtttt---gttttttgagacagtctcgctctgtcgcccaggctggagcgcagtagag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419176 80 +  48394510 CCTTATTTGGTTttttgttttgttttgtttt---gttttttgagacagcctcactctgttgcccaggctggagtgcagtggag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19950755 75 +  32716333 CCTTAtttg-----tttttttgttttgtttt---gttttttgagacagtctcactctgtcgctcaggctggagtgaagtggag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185117743 78 - 198365852 CCTTATttg-----tttttttgttttgttttttgtttttttgaggcagtctcattctgtcgcccaggctggagtgcagtggag
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178959128 78 - 192294377 ccttatttg-----tttttttgttttgttttttgtttttttgaggcagtctcattctgtcgcccaggctggagtgcagtggag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339119 78 - 180432695 ccttatttg-----tttttttgttttgttttttgtttttttgaggcagtctcactgtgtcgcccagggtggagtgcagtggag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31616014 78 -  90373283 CCTTATttg-----tttttttgttttgttttttgtttttttgaggcagtctcactctgtcgcccaggctggagtgcagtggag
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37421785 77 +  50472720 CCTTATTCG-----tttttttgtttgggttttt-ttgttttgagacactctcactctttcacccaggctggagtgcagtggta
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409  0 +  39895921 C

a score=223077.000000
s hg38.chr21_GL383581v2_alt     19375 93 +    116689 cgatctcagttcactgcagcctccgcctccaggtttaagtgattctcgtgcctcagcctccccagtagctaggattactggcatgggccacca
s panTro4.chr21              19523055 93 +  32799110 caatctcagttcactgcagcctccgcctccaggtttaagtgattctcgtgcctcagcctccccagtagctaggattactggcatgggccacca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419256 93 +  48394510 tgatctcagctcactgcagcctccacctccaggtttaagtgattctcgtgcctcagcctccccagtagctaggattactggcatgggccacca
i ponAbe2.chr21             C 0 M 239
s nomLeu3.chr25              19950830 93 +  32716333 cgatctcggctcactgcaacctctgcttccaggtttaagtgattctcgtgcctcagcctccccagtagctgggattacaggcatgggccacca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185117821 93 - 198365852 caatctcagctcactgcaacctccgcctccaggtttaagtgattcttgtgcctcagcctccccagtagctgggattacatgtgtgtgccacca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178959206 93 - 192294377 caatctcagctcactgcaacctccgcctccaggtttaagtgattcttgtgcctcagcctccccagtagctgggattacatgcgtgtgccacca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339197 93 - 180432695 caatctcagctcactgcaacctccgcctccaggtttaagtgattctcgtgcctcagcctccccagtagctgggattacatgcatgtgccacca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31616092 93 -  90373283 caatctcagctcactgcaacctccacctccaggtttaagtgattcttgtgcctcagcctccccagtagctgggattacatgcgtgtgccacca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409  0 +  39895921 C
e calJac3.chr21              37421862  0 +  50472720 C

a score=43032.000000
s hg38.chr21_GL383581v2_alt     19468 23 +    116689 cacccCAGTTAAttttggttttg
s panTro4.chr21              19523148 23 +  32799110 cacccCAGTTAAttttggttttg
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19950923 23 +  32716333 caccccagttaattttGGttttg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185117914 23 - 198365852 caccccagttaattttgtttttg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178959299 23 - 192294377 caccccagttaattttgtttttg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339290 23 - 180432695 caccccagttaattttgtttttg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31616185 23 -  90373283 caccccagttaattttgtttttg
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409  0 +  39895921 C
e ponAbe2.chr21              34419349 239 +  48394510 M
e calJac3.chr21              37421862  0 +  50472720 C

a score=126006.000000
s hg38.chr21_GL383581v2_alt     19491 52 +    116689 tttttgtgagatggagtttcactcttgtcacccgggctggagtgcagtggcc
s panTro4.chr21              19523171 52 +  32799110 tttttgtgagatggagtttcactcttgtcacccaggctggagtgcagtggcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419588 52 +  48394510 ttttggtgagatggagtttcattcctgtcacccaggctggagtgcagtggcc
i ponAbe2.chr21             M 239 C 0
s nomLeu3.chr25              19950946 52 +  32716333 tctttgtgagatggagtttcactcttgtcacccaggctggagtgcagtggcc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185117937 52 - 198365852 tttttgtgagacagagtttcactcttgtcacccaggctggggtgcagtggca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178959322 52 - 192294377 tttttgtgagacagagtttcactcttgtcacccaggctggagtgcagtggca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339313 52 - 180432695 tttttgtgagacagagtttcactcttgtcacccaggctggagtgcagtggca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31616208 52 -  90373283 tttttgtgagacagagtttcactcttgtcacccaggctggagtgcagtggca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409  0 +  39895921 C
e calJac3.chr21              37421862  0 +  50472720 C

a score=257775.000000
s hg38.chr21_GL383581v2_alt     19543 99 +    116689 cgatctcggctcactgcaacctctgcctctcaggttcaagcgattctcctgcctcagcctcctgagtagctgggattactggcatgcaccaccatgccc
s panTro4.chr21              19523223 99 +  32799110 cgatctcggctcactgcaacctctgcctctcaggttcaagcgattctcctgcctcagcctcctgagtagctgggattaccggcatgcaccaccatgccc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419640 89 +  48394510 cgatctcggctcactgcaacctccgcctctcaggttcaagcgattctcctgcctcagcctgctgagtagctgggattaccggcatgca----------c
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19950998 89 +  32716333 cgatctcggctcactgcaacctccgcctctcaggttcaagcgattctcctgcctcagcctcctgagtagctgggattactggcatgca----------c
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185117989 99 - 198365852 cgatcttggctcactgcaacctctgcctcccaggttcgagtgattctcctgcctcagcctcctgaatagctgggattataggcacccaccaccatgccc
i rheMac3.chr3              C 0 I 297
s macFas5.chr3              178959374 89 - 192294377 cgatcttggctcactgcaacctctgcctcccaggttcgagtgattctcctgcctcagcctcctgaatagctgggattataggcacccac----------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339365 89 - 180432695 tgatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctaggattataggcacgcac----------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31616260 99 -  90373283 cgatctcagctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattataggcatgcaccaccatgccc
i chlSab2.chr2              C 0 I 302
s calJac3.chr21              37421862 96 +  50472720 caatcttggctcactgcaacctctgcctcccaggttcaagcaatt---ctgcctcagcctcccaaatagctgggattacaggcacgcaccaccaggccc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409  0 +  39895921 C

a score=15419.000000
s hg38.chr21_GL383581v2_alt     19642 12 +    116689 caccatgcccag
s panTro4.chr21              19523322 12 +  32799110 caccatgcccag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419729 12 +  48394510 caccatgcccag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19951087 12 +  32716333 caccatgcccag
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178959463 12 - 192294377 caccatgcccag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339454 12 - 180432695 caccatacccag
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37421958  2 +  50472720 ----------gg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409  0 +  39895921 C
e rheMac3.chr3              185118088 297 - 198365852 I
e chlSab2.chr2               31616359 302 -  90373283 I

a score=3600.000000
s hg38.chr21_GL383581v2_alt     19654 1 +    116689 c
s panTro4.chr21              19523334 1 +  32799110 c
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419741 1 +  48394510 c
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19951099 1 +  32716333 c
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185118385 1 - 198365852 c
i rheMac3.chr3              I 297 C 0
s macFas5.chr3              178959475 1 - 192294377 c
i macFas5.chr3              C 0 I 306
s papAnu2.chr3              167339466 1 - 180432695 c
i papAnu2.chr3              C 0 I 304
s chlSab2.chr2               31616661 1 -  90373283 c
i chlSab2.chr2              I 302 C 0
s calJac3.chr21              37421960 1 +  50472720 c
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409 0 +  39895921 C

a score=416018.000000
s hg38.chr21_GL383581v2_alt     19655 144 +    116689 taatttttgtatttttagtagaaacggcatttctccatgttggccagactggtcttgaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctgggattacaggtatgagccaccatgc---------ccATCCCGTGATAC
s panTro4.chr21              19523335 144 +  32799110 taatttttgtatttttagtagaaacggcatttctccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctgggattacaggtatgagccaccatgc---------ccATCCCGGGATAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419742 144 +  48394510 taatttttgtatttttagtagaaacggcatttccccatgttggccaggctggtcttgaactcctgatctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaggtatgagtcaccatgc---------ccagccCGGGATAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19951100 144 +  32716333 taatttttgtatttttagtagaaacggcatttctccatgttggccaggctggtcttgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtactgggattacagctttgagccaccatgc---------ccggccCAGGATAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185118386 144 - 198365852 taacttttgtatttttagtagaaatggcatttccgcatgttgaccaggctggtgtcaaactcctgacctcaagtgacccgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgc---------cctgccCAGGATAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178959782 144 - 192294377 taacttttgtatttttagtagaaatggcatttccacatgttgaccaggctggtctcaaactcctgacctcaagtgacccgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgc---------cctgccCAGGATAC
i macFas5.chr3              I 306 C 0
s papAnu2.chr3              167339771 144 - 180432695 taatttttgtatttttagtagaaatggcatttccgcatgttgaccaggctggtctcaaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattataggtgtgagccaccatgc---------cctgcccggGATAC
i papAnu2.chr3              I 304 C 0
s chlSab2.chr2               31616662 144 -  90373283 taatttttgtatttttagtagaaatggcatttccgcatgttgaccaggctggtctcaaactcctgacctcaagtgatccgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgc---------cctgccCAGGATAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37421961 153 +  50472720 taatttctgtatttttagtaaagataggttttctccatgttggccaggctggtctcgaactcctgacttcaagtgatccacctacttcagcatcccaaagcgctggaattacaggtgtgagccactgtgcctgCTGCTACCAGCCCACGATAC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28037409   0 +  39895921 C

a score=2778231.000000
s hg38.chr21_GL383581v2_alt     19799 903 +    116689  
s panTro4.chr21              19523479 899 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34419886 917 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19951244 905 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185118530 913 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178959926 913 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167339915 913 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31616806 914 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37422114 886 +  50472720  
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28037409 971 +  39895921  
i canFam3.chr31             C 0 I 1443
e mm10.chr16                 91558103 1817 +  98207768 I

a score=30296.000000
s hg38.chr21_GL383581v2_alt     20702 11 +    116689 agtatgggcat
s panTro4.chr21              19524378 11 +  32799110 AGTATgggcgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34420803 11 +  48394510 AGTATgggcgt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19952149 11 +  32716333 AGCATgggcgt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185119443 11 - 198365852 AGTATgggtgt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178960839 11 - 192294377 AGTATgggtgt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167340828 11 - 180432695 Agtatgggtgt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31617720 11 -  90373283 AGTATgggtat
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37423000 11 +  50472720 AGCATgggctt
i calJac3.chr21             C 0 I 960
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28038380 1443 +  39895921 I

a score=3600.000000
s hg38.chr21_GL383581v2_alt     20713 1 +    116689 g
s panTro4.chr21              19524389 1 +  32799110 g
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34420814 1 +  48394510 g
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19952160 1 +  32716333 g
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185119454 1 - 198365852 g
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178960850 1 - 192294377 g
i macFas5.chr3              C 0 I 968
s papAnu2.chr3              167340839 1 - 180432695 g
i papAnu2.chr3              C 0 I 976
s chlSab2.chr2               31617731 1 -  90373283 g
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37423971 1 +  50472720 g
i calJac3.chr21             I 960 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28038380 1443 +  39895921 I

a score=6876.000000
s hg38.chr21_GL383581v2_alt     20714 2 +    116689 gt
s panTro4.chr21              19524390 2 +  32799110 gt
i panTro4.chr21             C 0 I 1
s ponAbe2.chr21              34420815 2 +  48394510 gt
i ponAbe2.chr21             C 0 I 1
s nomLeu3.chr25              19952161 2 +  32716333 gt
i nomLeu3.chr25             C 0 I 1
s rheMac3.chr3              185119455 2 - 198365852 gt
i rheMac3.chr3              C 0 I 969
s macFas5.chr3              178961819 2 - 192294377 gt
i macFas5.chr3              I 968 I 1
s papAnu2.chr3              167341816 2 - 180432695 gt
i papAnu2.chr3              I 976 I 1
s chlSab2.chr2               31617732 2 -  90373283 gt
i chlSab2.chr2              C 0 I 973
s calJac3.chr21              37423972 2 +  50472720 gt
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28038380 1443 +  39895921 I

a score=771991.000000
s hg38.chr21_GL383581v2_alt     20716 292 +    116689 -gctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacctgaggtcaggagtttgaaaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaaaattagccgggtatggtggcgtgtgcctgtaatcccagctacatgagaggctgaggcaggagaatcgcttgaacctggaaggcggaggttgcagtgagttgagattgcaccactgcactccagcctgggtgatatgtgcgagattccatctcaaaaa--------tgaa------------------------taaataaat-aaaTA
s panTro4.chr21              19524393 292 +  32799110 -gctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgaggtcaggagtttgaaaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaaaattagccgggtatggtggcatgtgcctgtaatcccagctacatgagaggctgaggcaggagaatcgcttgaacctggaaggcagaggttgcagtgagccgagatcgcaccactgcactccagcctgggtgatatgtgcgagattccatctcaaaaa--------tgaa------------------------taaataaat-aaaTA
i panTro4.chr21             I 1 C 0
s ponAbe2.chr21              34420818 293 +  48394510 -gctcacgcctgtaatcccagcactttgggagcccaaggcaggcggatcacctgaggtcaggagtttgaaaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaagattagccgggtgtggtggcgtgtgcctgtaatcccagcaacatgagaggctgaggcagaagaatcgcttgaacctggaaggcagaggttgcagtgagccgagatcgcaccactgcactccagcctgggtgatatgtgcaagattccatctcaaaaa--------tgaa------------------------taaataaataaaaTA
i ponAbe2.chr21             I 1 C 0
s nomLeu3.chr25              19952164 298 +  32716333 -gctcacgcctggaatcccagtacttttggaggtcgaggcagaaggatcacttgagcccaggagttcaggaccagtctgggcaacatgcgaaaactccagctttac-aaaaaaaaaaaaaaaaattaggcatggtggcacgggcctgtagtctcaggtactcaggaggctgaagtggttggatcactagagcctgggagttcgaggttgcaatgagccacgattgcattattgcactccagcctgggcaaca-gaccaagaccctgtctcaaaaaaaaTTTTTTTAA------------------------TAAATAAAT-ATACA
i nomLeu3.chr25             I 1 I 939
s rheMac3.chr3              185120426 292 - 198365852 -gctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgaggtcagtagtttgaaaccagcctggccaacttggtgaaaccccgtctctactaaaaatataaaaattatctgggtgtagtggcgtgtgcctgtaattgcaactacacgagaggctgaggcaggagaatcgcttgaacccggaaggcagaggttgcagtgagccgagattgcaccactgcactccagcctgggcgacatgagcaacattccatctcaaaaa--------taaa------------------------taaataaat-aaata
i rheMac3.chr3              I 969 I 84
s macFas5.chr3              178961822 292 - 192294377 -gctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgaggtcagtagtttgaaaccagcctggccaacttggtgaaaccccgtctctactaaaaatataaaaattatctgggtgtagtggcgtgtgcctgtaattgcaactacacgagaggctgaggcaggagaatcgcttgaacccggaaggcagaggttgcagtgagccgagattgcaccactgcactccagcctgggcgacatgagcaacattccatctcaaaaa--------taaa------------------------taaataaat-aaata
i macFas5.chr3              I 1 I 30
s papAnu2.chr3              167341819 292 - 180432695 -gctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcagtagtttgaaaccagcctggccaacttggtgaaacaccgtctctactaaaaatataaaaattatctgggtgtagtggcatgtgcctgtaattgcagctacacgagaggctgaggcaggagaatcgcttgaacccggaaggcagaggttacagtgagccgagattgcaccactgaactccagcctgggcgacatgagcaacattccatctcaaaaa--------taaa------------------------taaataaat-aaatt
i papAnu2.chr3              I 1 I 26
s chlSab2.chr2               31618707 291 -  90373283 -gctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacctgaggtcagtagtttgaaaccagcctggccaacttggtgaaaccccatctctactaaaaatataaaaattatctgggtgtagtggcatgtgcctgtaattgtagctacacaagaggctgaggcaggagaatcgcttgaacccggaa-gcagaggttgcagtgagccgagattgcaccactgcgctccagcctgggcgacatgaacaacattgcatctcaaaaa--------taaa------------------------taaataaat-aaata
i chlSab2.chr2              I 973 I 33
s calJac3.chr21              37423974 314 +  50472720 gactcacgcctgtaatcacagcactttgggaggctgaggtaggcggatcacctcaggtcaggagtttgaaaccagcctggccaaaatggtgaaacctagtccctactgaaaatacaaaaattagccaggcatggtgacgggtgcctgtaatcccagctacttgggaggctgaggcaaaagaattgcttgaacccgggaggcagaggttgcagtgagccgagatcgtaccactgcactccagcctgggtgaca---gcaagattccatctcaaaaa--------taaattaattatataattatatataatttaattaaat-aaata
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28038380 1443 +  39895921 I

a score=1018241.000000
s hg38.chr21_GL383581v2_alt     21008 392 +    116689 ggccaggcgcggtggctcacacctgtaatctcagcactttgggaggctgaggtgggcggatcac--gaggtcaggagttcgagaacagcctggccaacatgatgataccctgtttcttctaaaaatataaaaattagccaggcatggtggcacacgcctgttgtaatcccagctacttgagaggctgatgcaagagaattgcttgagcccgggaggtggaggttgcagtgagccgagatcgcacaactgcactctagcctgggcgacagagcaaaact--gtctcgaaaaaataat------aataaataaagagatagataaaaacgtgtgtgtat--atatctacaccca----ctatatatatatatatacatatatatatagcattatata---atacattgtatta
s panTro4.chr21              19524685 400 +  32799110 ggccaggcgcagtggctcatgcctgtaatctcagcactttgggaggctgaggtgggcggatcac--gaggtcaggagttcgagaacagcctggccaacatgatgataccctgtttcttctaaaaatataaaaattagctgggcatggtggcacacgcctgttgtaatcccagctacttgagaggctgatgcaagagaattgcttgagcccgggaggtggaggttgcagtgagccgagatcgcacaactgcactctagcctgggcgacagagcaaaact--gtctcgaaaaaaTAATaata--aataaataaatagatagataaaAATGTGTGTGTAT--ATATCTACACCCActctctctctctctctctctctATATATATATGGCATTATATA---ATAGATTGTATTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34421111 385 +  48394510 ggccaggcgcggtggctcacgcctgtaatctcagcactttgggaggccgaggtgggcggatcac--gaggtcaggagttcgagaacagcctggccaacatgatgataccctgtttctactaaaaatataaaaattagccgggcatggtggcacacgcc---tgtaatcccagctacttgagaggctgatgcaagagaattgctggagcccgggaggcggaggttgcagtgagccgagatcgtacaactgcactctagcctgggcgacagagcaaaactccatctcgaaaaaataat------aataaataaataaaTAGATAAAAATGTGTGTGTAT--ATATCTACACCCA----------CTGtatatatatatatatatataGCATTATATA---ATACATTGTATTG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19953401 383 +  32716333 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcacctgaggtcaggagtttgaaaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtggcgtgtacc---tgtaatcccagctacatgagaggctgatgcaagagaattgcttgagcccgggaggtggaggttgcagtgagccgagatcgcacaactgcactctagcctgggcgacagagcaagactccgtctcgaaaaaataat------aataaataa----atagataaaaatgtgtgtgtat--atatctacaccca----------ctatatatatatatatatatatggcattatata---atacattgtatta
i nomLeu3.chr25             I 939 C 0
s rheMac3.chr3              185120802 379 - 198365852 ggccaggcgcggtggctcacgcctgtaatctcagcactttggcaggctgaggcaggcagatcac--gaggtcaggagtttgagaacagcctggccaacatgaagataccctgtctctactaaaaatataaaaattagccggacatggtggcacacgcc---tgtaatcccagctacttgagaggctgaggcaagagaattgcttgagcccgggaggtggaggttgtggtgcgctgagatcacgcgactgcactctagcctgggcgacagagcaggactccgtctcgaaaaaat---------aataaataaataaatagataaaAAtatatgtgtgtagatatctataccca------------------ctatatatatgtattgcattatacatatatagagtgtatta
i rheMac3.chr3              I 84 C 0
s macFas5.chr3              178962144 379 - 192294377 ggccaggcgcggtggctcacgcctgtaatctcagcactttggcaggctgaggcaggcagatcac--gaggtcaggagtttgagaacagcctggccaacatgaagataccctgtctctactaaaaatataaaaattagccagacatggtggcacacgcc---tgtaatcccagctacttgagaggctgaggcaagagaattgcttgagcccgggaggtggaggttgtggtgagctgagatcacgcgactgcactccagcctgggcgacagagcaagactccgtctcgaaaaaat---------aataaataaataaatagataaaaatatatgtgtgtagatatctacaccca------------------ctatatatatgtattgcattatacatatatagagtgtatta
i macFas5.chr3              I 30 C 0
s papAnu2.chr3              167342137 375 - 180432695 ggccaggcgcggtggctcacgcctgtaatctcagcactttggcaggctgaggcaggcggatcac--gaggtcaggagtttgagaacagcctggccaacatgaagataccctgtctctactaaaaatataaaaattagccggacatggtggcacatgcc---tgtaatcccagctacttgagaggctgaggcaagagaattgcttgagcccgggaggtggaggttgcggtgagccgagattgcgcgactgcactgtagcctgggcgacagagcaagactctgtctcgaaaaaat---------aataaataaataaatagataaaaatatatgtat----atatctacaccca------------------ctatatatatatattgcattatacatatatagagtgtatta
i papAnu2.chr3              I 26 C 0
s chlSab2.chr2               31619031 379 -  90373283 ggccaggcgcagtggctcacgcctgtaatctcagcactttggcaggctgaggcaggcagatcat--gaggtcaggagtttgagaacagcctggccaacatgaagataccctgtctctactaaaaatataaaaattagccggacatggtggcacacgcc---tgtaatcccagctacttgagaggctgaggcaagagaattgcttgagcccgggaggtggaggttgcggtgagccgagatcacgcgactgcattctagcctgggcgacagagcaagactccatctcgaaaaaat---------aataaataaataaatagataaaaatatgtgtgtgtatatatctataccca------------------ctatatatatgtattgcattatacatatatagagtgtatta
i chlSab2.chr2              I 33 C 0
s calJac3.chr21              37424288 397 +  50472720 ggccaggcatggtagctcacacctataaccccagcacactgacaggctgaggcaggtgaatcaa--gaggtcaggagttcgagaccagcctggccaacatgatgcgaccttgtctctgctaaaaatccaaagattagccaggcaaggtggcatgcgcc---tgtaatcccagttacttgggaggtcgaagcaggagaattgcttgaacccgggaggtggaggttgcagtgagctgagatcacgccactgcactccagcctgggcaacagagcaagactccatctcgaaaaaataataacaataataaataaaaatatgtatgtatgtatgtatgtat--atatctacacact----atatatatatgtgtgtgtgtgtgtatATTGCATTATATA---ATACATTGTATTA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91558103 1817 +  98207768 I
e canFam3.chr31              28038380 1443 +  39895921 I

a score=12548.000000
s hg38.chr21_GL383581v2_alt     21400 5 +    116689 tatct
s panTro4.chr21              19525085 5 +  32799110 TATCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34421496 5 +  48394510 TATCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19953784 5 +  32716333 tatct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185121181 5 - 198365852 tatct
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178962523 5 - 192294377 tatct
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167342512 5 - 180432695 tatct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31619410 5 -  90373283 tatct
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37424685 4 +  50472720 TATA-
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28039823 5 +  39895921 TATGt
i canFam3.chr31             I 1443 C 0
e mm10.chr16                 91558103 1817 +  98207768 I

a score=956450.000000
s hg38.chr21_GL383581v2_alt     21405 249 +    116689 ataatacatatgtgtat----GTGTGTGGTTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTCGGGCCTCCAGAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATACCTCCAC--GGCCTTTTTTTGTTATTATGTCCATTACTGGGAAAAAGGAGGAATCC------AACAGGCAAGAGCATCTTTCTTT--TTTGTTTG-GATTTTCTTTTCTTTGCAGTTTCT
s panTro4.chr21              19525090 249 +  32799110 ATAATACATATGTGTAT----GTGTGTGGTTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTCGGGCCTCCAGAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATACCTCCAC--GGCCTTTTTTTGTTATTATGTCCATTACTGGGAAAAAGGAGGAATCC------AACAGGTAAGAGCATGTTTCTTT--TTTGTTTG-GATTTTCTTTTCTTTGCAGTTTCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34421501 249 +  48394510 ATAATACATATGTGTAT----GTGTGTGGTTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTCGGGCCTCCAAAAAACATTGAGGTGACCCCAGCAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATACCTCCAC--GGCCTTTTTTTGTTATTATGTCCATTACTGGGAAAAAGGAGGAATCC------AACAGGCAAGAGCATGTTTCTTT--TTTGTTTG-GATTTTCTTTTGTTTGCAGTTTCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19953789 269 +  32716333 ataaaacatatgtgtat----GTGTGTGGTTTTC------TC-------TTTGTAATTCTTTTTCAGTGACTGTCGGGCCTCCAAAAAGACTGTCGGGCCTCCAAAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATACCTCCAC--GGCCTTTTTTTGTTATTATGTCCATTACTGGGAAAAAGGAAGAACCC------AACAGGCAAGAGCATGTTTCTTT--TTTGTTTG-GATTTTCTTTTCTTTGCAGTTTCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185121186 249 - 198365852 ataatacatatgtgtat----gtgtatgATTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTCGGGCCTCCAGAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATGCCTCCAC--AGCCTTTTTTTGGTATTATGTCCGTTACTGGGAAAAAGGAGGACTCC------AGCAGGCAAGAGCATGTTCCTTT--TTTGTTTG-GGTTTTCTTTTCTTTGCAGTTTCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178962528 249 - 192294377 ataatacatatgtgtat----gtgtatGATTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTCGGGCCTCCAGAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATGCCTCCAC--AGCCTTTTTTTGGTATTATGTCCGTTACTGGGAAAAAGGAGGACTCC------AGCAGGCAAGAGCATGTTCCTTT--TTTGTTTG-GGTTTTCTTTTCTTTGCAGTTTCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167342517 249 - 180432695 ataatacatatgtgtat----gtgtatgattttc------tc-------tttgtaattcttTTCCAGT--------------------GACTGTCGGGCCTCCAGAAAACGTCGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATACCTCCAC--AGCCtttttttGGTATTATGTCCATTACTGGGAAAAAGGAGGAATCC------AACAGGCAAGAGCATGTTCCttt--tttgtttg-gattttcttttctttgcagttTCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31619415 249 -  90373283 ataatacatatgtgtat----gtgtatGATTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTCGGGCCTCCAGAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCATCATCAGGTTCTCCTCTCCCTTTGACATCGCTGATACCTCCAC--AGCCTTTTTTTGGTATTATGTCCATTACTGGGAAAAAGGAGGAATCC------AACAGGCAAGAGCATATTCCTTT--TTTGTTTG-GATTTTCTCTTCTTTGCAGTTTCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37424689 228 +  50472720 -------------------------ATGGTTTTC------TC-------TTTGTAATTCTTTTTCAGT--------------------GACTGTTGGACCTCCAAAAAACATTGAGGTGACCCCAGGAGAAGGCTCCCTCGTCGTCAGGTTCTCCCCTCCCTTTGACATCCCTGATACCTCCAC--AGCCTGTTTTTGGTACTATATCTATTACTGGGAAGAAGCTGGAGTCC------AAAAGGCGAGAGCATGTTTCTTT--TTTGTTTG-GATTTTCTTTCCTTTGCAGTTTCC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91559920 256 +  98207768 ACAGTGTATACGGGTGC----CTGTGTCACTCACGTGAGGTC-------TCTGTGATTCTATTTCAGT--------------------TACTGTTGGACCTCCGAAAAACATCTCGGTGACCCCAGGAAAAGGTTCCCTCGTCATACACTTCTCCCCTCCCTTTGATGT--------GTTCCACGGGGCAACTTTTCAGTATCTTGTCCACTACTGGGAAAAGTCAGAAACCCAACAGGAACAGGTAAGGCCCCTTTTCTTC--TTTGTTTATGGTTTTTTTCTCTTTAGAGTTTTT
i mm10.chr16                I 1817 I 225
s canFam3.chr31              28039828 250 +  39895921 ataaaatatatgtatatattcatatatatttttt------ttGTTTGTGTTTGCTATTCTATTTCAGT--------------------GACCGTTGGGCCTCCTGAGAACGTTTGGGTGACTCCAGGAGAAGGCTCCCTTGTCATCAGGTTTTCCTCTCCCTTTGACATCTCTC---CCTCCTC--TGCCACTTTTTTGTATTACGTCCATTACTGGGAAAAGGGCGGAATCC------AAAAGGCAAGAGCATTTTTTTCTACTTTGTTTT-GCTTTTCTTTCCTTT---------
i canFam3.chr31             C 0 C 0

a score=2137255.000000
s hg38.chr21_GL383581v2_alt     21654 765 +    116689  
s panTro4.chr21              19525339 763 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34421750 773 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19954058 792 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185121435 685 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178962777 685 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167342766 677 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31619664 687 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37424917 757 +  50472720  
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28040078 861 +  39895921  
i canFam3.chr31             C 0 I 134
e mm10.chr16                 91560176 225 +  98207768 I

a score=1037530.000000
s hg38.chr21_GL383581v2_alt     22419 356 +    116689 tttttttttttttttttGAG--CTGGAGTTTCGCTCTTGatgcccagctagtttttgtatttttagtagagacagggtttttaccacgttggtcaggctggtctcagactcctgacctcaggtgatctgcccaccttggccacccaaagtgctgggattacaggcatgagccaccgtgcccggccCATTTCatctttatactaatccg-tttgcagagagagaatccaagtcgttaagtggcttgcctcaggtcagcagcgaatcactggcagagcagagcagagcagagatgcctagcttcagagccctgctcttgaccaccatCTTTTTCTGCCACACGCTTTGTATCTGCACTTCT
s panTro4.chr21              19526102 356 +  32799110 tTTTTTTTTTTTTTTTTGAG--CTGGAGTTTCGCTCTTGatgcccagctagtttttgtatttttagtagagacagggtttttaccacgttggtcaggctggtctcggactcctgacctcaggtgatctgcccaccttggccacccaaagtgctgggattacaggcatgagccaccgtgcccggccCATTTCATCTTTATACTAATCCG-tttgcagagagagaatccaagttgttaagtgacttgcctcaggtcagcagcgaatcactggcagagcagagcagagcagagatgcctagcttcagagccctgctcttgaccaccatctttttctgcCGCACGCTTTGTATCTGCACTTCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34422523 349 +  48394510 tttttttttttttttttGAG--CTAGAGTTTCGCTTTTGGTgcccagctagtttttgtatttttagtagagacagggttttcaccacattggtcaggctggtctcgaactcctgacctcaggtgatctgcccaccttggccacccaaagtgctgggattacaggcgtgagccaccgtgcccggccCATTTCATCTTTATACTAATCCG-TTTGC--AGAgagaatccaagtcgtgaagtgacttgcctcaggtcagcagcgaatcactg-----gcgcagcagagcagagacgcctagcttcagagccctgctcttgaccaccacctttttctgccacacgctttgTATCTGTGCTTCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19954850 349 +  32716333 tttttttttttttttttGAG--CTGGAGTTTCGTTCTCGatgcccagctagtttttgta-ttttagtagagacaggg-tttcgccacgttggtcaggctggtctcaaactcctgacctcaggtgatctgcccaccttggccacccaaagtgctgggattacagtcatgagccaccatgcccggccCATTTCATCTTTATACTAATCCG-TTTGCAGAGACAGAATCCAAGTCgttaagtgacttgcctcaggtcagcagcgaatcactg-----gcagagcagagcagagacgcctagcttcagagccctgctcttgaccaccatCTTTTTCTGCCACACACTTTGTATCTGCACTTCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185122120 350 - 198365852 ttTTTTTTTTTTTTTTTTAG--CTGGAGTTTCATTCTTGatgcccagctagtttttgtatttttagtagagatgggg-tttcaccatattggtcaggctggtctcgaactcctgacctcaggtgatctgcccaccttggccacctaaagtgctgggattacaggcatgagccaccgtgcctagccCATTTCATCTTTATACTAATCCG-tttgcagagagggaatccaagtcgttaagtgacttgcctcaggtcagtagcaaaccactg-----gcagagcagagcagagatgcctagcttcagagccgtgctcttgaccaccatgtttttctgCCACACACTTTGTATCTGCGCTTCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178963462 350 - 192294377 ttTTTTTTTTTTTTTTTTAG--CTGGAGTTTCATTCTTGatgcccagctagtttttgtatttttagtagagatgggg-tttcaccatattggtcaggctggtctcgaactcctgacctcaggtgatctgcccaccttggccacctaaagtgctgggattacaggcatgagccaccgtgcctagccCATTTCATCTTTATACTAATCCG-tttgcagagagggaatccaagtcgttaagtgacttgcctcaggtcagtagcaaaccactg-----gcagagcagagcagagatgcctagcttcagagccgtgctcttgaccaccatgtttttctgCCACACACTTTGTATCTGCGCTTCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167343443 344 - 180432695 ------ttttttttttttag--ctggagttttgttcttgatgcccagctagtttttgtatttttagtagagataggg-tttcaccatattggtcaggctggtctcgaactcctgacctcaggtgatctgcccaccttggccacccaaagtgctgggattacaggcatgagccaccgtgcctagcccatTTCATCTTTATACTAATCCG-TTTGCAGAGAGGGAATCCAAGTCGTTAAGTGACTTGCCTCAGGTCAGCAGCAAACCAAtg-----gcagagcagagcagagatgCCTACCTTCAGAGCCGTGCTCTTGACCACCATGTTTTTCTGCCACACACTTTGTATCTGcacttct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31620351 352 -  90373283 ttttttttttttttttttAAGTCTGGAGTTTCATTCTTGatgcccagctagtttttatatttttagtagagatgggg-tttcaccatattggtcaggctggtctcgaactcctgacctcaggtgatctgcccaccttggccacccaaaatgctgggattacaggcatgagccaccgtgcctagccCATTTCatctttatactaatccg-tttgcagagagggaatccaagtcgttaagtgacttgcctcaggtcagcagcaaaccactg-----gcagagcagagcagagatgcctagcttcagagccgtgctcttgaccaccatgtttttctgCCACACACTTTGTATCTGCACttct
i chlSab2.chr2              C 0 I 131
s calJac3.chr21              37425674 348 +  50472720 --ttTTTTTTTTTTTTTGAG--ATGGAGTTTCACTCTTGatgcccagctaagtgttgaatttttagtagagaggggg-tttcaccacgttggtcaggctggtgtcaaactcctgacctcaggcgatctgcccacctcggccacccaaagtgttgggattacagatgtgagccaccatgcccagccCATTTCATCTTTATACCAAcctgttttgcagaaagggaatccaagttgttaagtcacttgccccaggtcagccccgaaccactg-----gcagagcagagcagagtcatctagcttcagagccctgctcttgaccaccatgttttcctgCCACATACTTTATATCTGCACTTC-
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28040939 134 +  39895921 I

a score=3219.000000
s hg38.chr21_GL383581v2_alt     22775 14 +    116689 CCTTCATTtttttt
s panTro4.chr21              19526458 11 +  32799110 CCTTCA---ttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34422872 13 +  48394510 CCTTCA-TTTtttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955199 12 +  32716333 CCTTCA--tttttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185122470  8 - 198365852 ------CTCTCTTT
i rheMac3.chr3              C 0 I 325
s macFas5.chr3              178963812  8 - 192294377 ------CTCTTTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167343787  8 - 180432695 ------ctcttttt
i papAnu2.chr3              C 0 I 30
s calJac3.chr21              37426022  7 +  50472720 -------TTCAttt
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28040939 134 +  39895921 I
e chlSab2.chr2               31620703 131 -  90373283 I

a score=15581.000000
s hg38.chr21_GL383581v2_alt     22789 11 +    116689 ttttttttaat
s panTro4.chr21              19526469 11 +  32799110 ttttttttaat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34422885 11 +  48394510 tttttttttat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955211 11 +  32716333 ttttttttaat
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178963820 11 - 192294377 TTTTTTTTAAT
i macFas5.chr3              C 0 I 313
s papAnu2.chr3              167343825 11 - 180432695 ttttttctttt
i papAnu2.chr3              I 30 I 294
s calJac3.chr21              37426029 11 +  50472720 tttttttaaat
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28040939 134 +  39895921 I
e rheMac3.chr3              185122478 325 - 198365852 I
e chlSab2.chr2               31620703 131 -  90373283 I

a score=855357.000000
s hg38.chr21_GL383581v2_alt     22800 295 +    116689 tattgttctttttttgagacagtctcactgtcgcccaggctagagtactgtggtaccatcttggctcactgcaacctctacctccccggctcaagcagtccacccacttcagccacccgagtagctggaactacaggcctgtgccaaccacacctggctaatatttttaaatttttttttatagagatggggttttgccatgttgcccaggctggtctcgaactcctggtctcaagcgatctgcccacctcagtctccaaaagtgctgaggttacaggcatgagccc--gttcccag
s panTro4.chr21              19526480 294 +  32799110 tattgttctttttttgagacagtctcactgtcgcccaggctagagtactgtggtaccatcttgcctcactgcaacctctacctccccggctcaagcagtccacccacttcagccacccgagtagctggaactacaggcctgtgccaaccacacctggctaatatttttaaa-ttttttttatagagatggggttttgccatgttgcccaggctggtctccaactcctggtctcaagcgatctgcccacctcagtctccaaaagtgctgaggttacaggcatgagccc--gttcccag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34422896 293 +  48394510 tattgttctttttttgagacagtctcactgtcgcccaggctagagtactgtggtatgatcttggctcactgcaacctctacctccccggctcaagcaatccacccacttcagccacccgagtagctggaactacaggcctgtgccaaccacacctggctaatatttttaaa--tttttttatagagatggagttttgccatgttgcccaggctggtctcgaactcctggtctcaagcgatctgcccacctcagtctccaaaagtgctgaggttacaggcatgagtcC--ATTCCCAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955222 295 +  32716333 tattgttctttttttgagacagtctcactgtcgcccaggctagagtactgtggtacaatcttggctcactgcaacctctacctccct-gctcaagcaatccacccacttcagccacccgagtagctggaactacaggcctgtgccgaccacacctggctaatatttttaaa-ttttttttatagagatggggttttgccatgttgcccaggctggtctcgaactcctggtctcaagcgatctgcccacctcagtctccaaaagtgctgaggttacaggcatgagcccctgttcccag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185122803 296 - 198365852 TAttgttctttttttgagacagtctcactgtcgtccaggctggagtactgtggtacaatcttggctcactgccacctctacctcccaggctcaagcaatccacccacttcagcttcccgagtagctggaattacaggcctgtgccaaccacacccggctaacattttaaaa-ttttttttgtagagatggggttttgccatgttgctcaagctggtctcgaactcgtggtctcaaacaatctgcccacctcagtctccgaaagtgctgaggttacaggcatgagcccctgttcccag
i rheMac3.chr3              I 325 C 0
s macFas5.chr3              178964144 296 - 192294377 TATTGttctttttttgagacagtctcactgtcgcccaggctggagtactgtggtacaatcttggctcactgcaacctctacctcccaggctcaagcaatccacccacttcagcttcccgagtagctggaattacaggcctgtgccaaccacacccggctaacattttaaaa-ttttttttgtagagatggggttttgccatgttgttcaagctggtctcgaactcgtggtctcaaacaatctgcctacctcagtctccgaaagtgctgaggttacaggcatgagcccctgttcccag
i macFas5.chr3              I 313 C 0
s papAnu2.chr3              167344130 296 - 180432695 tattgttgtttttttgagacagtctcactgttgcccaggctggagtactatggtacaatcttggctcactgcaacctctacctcccaggctcaagcaatccacccacttcagcctccccagtagctggaattacaggcctgtgccaaccacacccggctaacattttaaaa-ttttttctgtagagatagggttttgccatgttgctcaagctggtctcgaactcctggtctcaaacaatctgcccacctcagtctccgaaagtgctgaggttacaggcatgagcccctgttcCCAG
i papAnu2.chr3              I 294 C 0
s chlSab2.chr2               31620834 283 -  90373283 TAttgttctttttttgagacggtctcactgtcgcctaggctggagtactgtggtacaatcttggctcactgcaacctctacctcccaggctcaagcagtccacccacttcagcttcccgagtagctggaattacagacctgtgccaaccacacccggctaatatttttaat-ttttttttgtagagatggggttttgccatgttgctcaagctggtctcgaactcctggtctcaaacaatctgcccacctcaatcattgaaagtgctgaggttacaggcatg-------------ag
i chlSab2.chr2              I 131 C 0
s calJac3.chr21              37426040 291 +  50472720 tactgctctttttttgagagcgtctcactgtcgcccaggctggagtatggtggtacgatctcgg-tcactgcaacctccgcctcctgggctcacgcaatccacccacttcagcctcctgagtagctggg---acaggtttgtgcc-accacacctgactaatttctttaaa-ttttttttgtagagatggggttttgccacgttgcccagggtggtctcgaactcctggtctcaagtgatctgcccacctcggtctctggaagtgctgaggttacaggcatgagcccctgtccccag
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28040939 134 +  39895921 I

a score=541905.000000
s hg38.chr21_GL383581v2_alt     23095 171 +    116689 ccTCCTCTTCATTTCATTATGGGGAATATGAA---ACTGGGAAGAGTGAGACTCACTGAAAAACAGA--CTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCATATC-AGAGCTCAAGATCTGGGTCGATTAGAATAGAGGG------AGCCTGGCAGAATCCAGAA--GAGAGACTC-TGCC
s panTro4.chr21              19526774 171 +  32799110 ccTCCTCTTCATTTCATTATGGGGAATATGAA---ACTGGGAAGGGTGAGACTCACTGAAAAACAGA--CTCACCATCTAGGAAATAGGGAAA-AATCATTTCTCCATATC-AGAGCTCAAGATCTGGGTCGATTAGAATAGAGGG------AGCCTGGCAGAATCCAGAA--GAGAGACTC-TGCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423189 173 +  48394510 CCTCCTCTTCATTTCATTTTGGGGAATATGAA---ACTGGGAAGGGTGAGACTCACTGAAAAACAGA--CTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCAAATC-AGAGCTCAAGATCTGGGTCGATTAGAATAGGGGG------AGCCTGGCAGAATCCAGAAGGGAGAGACTC-TGCC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955517 171 +  32716333 ccTCCTCTTCATTTCATTATGGGGAATATGAA---ACTGGGAACGGTGAGACTCACTGAAAAACAGA--CTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCAAATC-AGAGCTCAAGATCTGGGTCGATTAGAATAGAGGG------AGCCTGGCAGAATCCACAA--GAGAGAGGC-TGCC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185123099 173 - 198365852 ccTCCTCTTCATTTCATTATGGGGAGTATGAA---ACTGGCAAGGTTGAGACTCACTGAAAAACAGA--TTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCAAATC-AGAGCTCAAGATCTGGGTCAATTAGAATAGAAGG------AGCCTGGCAGAATCCAGAAGAGAGAGACTC-TGCC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178964440 173 - 192294377 ccTCCTCTTCATTTCATTATGGGGAGTATGAA---ACTGGCAAGGTTGAGACTCACTGAAAAACAGA--TTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCAAATC-AGAGCTCAAGATCTGGGTCAATTAGAATAGAAGG------AGCCTGGCAGAATCCAGAAGAGAGAGACTC-TGCC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167344426 173 - 180432695 CCTCCTCTTCATTTCATTATGAGGAGTATGAA---ACTGGCAAGGTTGAGACTCACTGAAAAACAGA--TTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCAAATC-AGAGCTCAAGATCTGGGTCAATTAGAATAGAGGG------AGCCTGGCAGAATCCagaagagagagactc-tgcc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621117 174 -  90373283 ccTCCTCTTCATTTCACTATAGGGAGTATGAA---ACTGGCAAGGTTGAGACTCACTGAAAAACAGA--TTTAGCATCTAGGAAATAGGGAAA-AATCATTTCTCCAAATC-AGAGCTCAAGATCTGGGTCAATTAGAATAGAGGG------AGCCTGACAGAATCCAGGAGAGAGAGACTCTTGCC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37426331 156 +  50472720 ccTCCTCTTCATTTCATTATGGGGAGTATGAA---ACTGGGAAGGGTGAGACTCATTGAGAAACAGA--TGTAGCATCCAGGAAGTAGGGAAA-A-------------ATC-AGAACTCAAGATCTGGGTTGATTAGGATAGAGGG------AGCCTGGCAGATTCTAG----GAGAGACTT-GGCC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28041073 179 +  39895921 CTTCCTCCTTGTTTCTTAAT----AGTCTAAAAACATTGAGGAAGGCAAAATTCACTGAAGAAGAGACTCTTATCATATGGGGAAAAAGGAAATAATTACTTCTCTGAATCAAGAGATCAAGGTCTGGG-CAACTAGAATAGAGAAGGGCCTGGTCTGGAAGATTCCAGAA--GGGATTCTC-CCCC
i canFam3.chr31             I 134 C 0
e mm10.chr16                 91560176 225 +  98207768 I

a score=383840.000000
s hg38.chr21_GL383581v2_alt     23266 132 +    116689 TCTTCCAAGTCTGTCCTCTCCAACTGGATACGGTGCCGGAAATGCAAGAGATAGGATGGGCCCTCTGGCCACGCTTTTCTCCACCCTTTGGTTGCTTTCTTCACTCGAGGGCACCGTGTTGCCATGCTCCCT
s panTro4.chr21              19526945 132 +  32799110 TCTTCCAAGTCTGTCCTCTCCAACTGGATACGGTGCCGGAAATGCAAGAGATAGGATGGGCCCTCTGGCCACGTTTTTCTCCACCCTTTGGTTGCTTTCTTCACTCGAGGGCACCGTGTTGCCATGCTCCCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423362 132 +  48394510 TCTTCCAAGTCTGTCCTCACCAACCGGATACAGTGCCGGAAATGCAAGAGATGGGATGGGCGCTCTGGCCACGTTTTTCTCCACCCTTTGGTTGGTTTCTTCACTCGAGGGCACCGTGTTGCCATGCTCCCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955688 132 +  32716333 TCTTCCAAGTCTGTCCTCACCAACCGGATATGGTGCCAGAAATGCAAGAGATGGGATGGGCGCTCTGGCCACGTTTTTCTCCACCCTTTGGTTGGTTTCTTCACTCGAGGGCACCGTGTTGCCATGCTCCCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185123272 131 - 198365852 TCTTCCAAG-CTGTCCTCACCAACCGGATATGGTGCCGGAAATGCAGGAGATGGGGTGGGCGCTCTGGCCACGTTTTTCTCCACGCTTTGGTTGGTTTCTTCACTTGAGGGCACTGTGTTGCTGTGCTACCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178964613 131 - 192294377 TCTTCCAAG-CTGTCCTCACCAACCGGATATGGTGCCGGAAATGCAGGAGATGGGGTGGGCGCTCTGGCCACGTTTTTCTCCACGCTTTGGTTGGTTTCTTCACTTGAGGGCACTGTGTTGCTGTGCTACCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167344599 131 - 180432695 tcttCCAAG-CTGTCCTCACCAACCGGATATGGTGCCGGAAATGCAGAAGATGGGGTGGGCGCTCTGGCCACGTTTTTCTCCACCCTTTGGTTGGTTTCTTCACTTGAGGGCACTGTGTTGCTGTGCTACCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621291 131 -  90373283 TCTTCCAAG-CTGTCCTCACCAACCGGATATGGTGCCAGAAATGCAGGAGATGGGGTGGGCGCTCTGGCCACGTTTTTCTCCACCCTTTGGTTGGTTTCTTCACTTGAGGGCACTGTGTTGCTGTGCTACCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37426487 132 +  50472720 TCTTCCAAGTCTATCCTTACCCACCGGTTACAGTGCTGGCAGCGCAGGAGATGGGATGGGCGCTCTGGCCATGTTTTTCTCCACCCTCTGGTTGTTTTCTTCACTCAAGGGCACCGTGTGGCCGAGCTCCCT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28041252   0 +  39895921 C

a score=8400.000000
s hg38.chr21_GL383581v2_alt     23398 3 +    116689 CCC
s panTro4.chr21              19527077 3 +  32799110 CCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423494 3 +  48394510 CCC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955820 3 +  32716333 CCC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185123403 3 - 198365852 CCC
i rheMac3.chr3              C 0 I 1166
s papAnu2.chr3              167344730 3 - 180432695 CCC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621422 3 -  90373283 CCC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37426619 3 +  50472720 CCC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28041252 0 +  39895921 C
e macFas5.chr3              178964744 0 - 192294377 C

a score=423339.000000
s hg38.chr21_GL383581v2_alt     23401 265 +    116689 CAAGGGCCCGCCCATACTTTTG-TTTTTTTAGGATGGAGTCCATCCACTTCTCTGCACTGAGTCAGCCCCCAGAGGGCGAGTTGCCACTTGTATCCTAGAGCTGGGCAGGGCTGCCCAGCACTGGAGAACTCAGCTCCAGGACCCTGGGGCCAGCCTTGTTGAGCAGCAAGCTCTAATGAAGAGCACACAGAACAGGCTTCCACTGCCTGGGACCCGCTTAGCACcatgtcacttagcctctctgggctgcagcttcctcgtgtat
s panTro4.chr21              19527080 266 +  32799110 CAAGGGCCCGCCCATACTTTTGTTTTTTTTAGGATGGAGTCCATCCACTTCTCTGCACTGAGTCAGCCCCCAGAGGGCGAGTTGCCACTTGTATCCTAGAGCTGGGCAGGGCTGCCCAGCACTGGAGAACTCAGCTCCAGGACCCTGGGGCCAGCCTTGTTGAGCAGCAAGCCCTAATGAAGAGCACACAGAACAGGCTTCCACTGCCTGGGACCCGCTTAGCACcatgtcacttagcctctctgggctgcagcttcctcgtgtat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423497 266 +  48394510 CAAGGGCCCGCCCATACTTTTGTTTTTTTTAGGATGGAGTCCATCCACTTCTCTGCACTGAGTCGGCCCCCAGAGGGCGAGTTGCCACTTGTATCCTAGAGCTAGGCACGGCTGCCCAGCACTGGAGGACTCAGCTCCAGGACCCTGGGGCCAGCCTTGTTGagcagcgtgccctaatgaagagcacacagaacaggcttccactgcctggaacccacttagcaccatgtcacttagcctctctgggctgcagcttcctcgtgtat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19955823 263 +  32716333 CAAGGGCCCACCCATACTTTTGTTTTTTTTAGGATGGAGTCCATCCACTTCTCTGCACTGAGTCGGCCCCCAGAGGGCGAGTTGCCACTTGTATCCTACAGCTGGGCAGGGCTGCCCAGCACTGGAGGACTCAGCTCCAGGACCCAGGGGCCAGCCTTGTTGAGCAGCGTGCCCTAATGAAGAGCACACAGAACAGGCTTCCGCTGCCCGGGACCCGCTTAGCACcatgtcacttagcctctctgggctgcagct---ttgtgtat
i nomLeu3.chr25             C 0 I 318
s papAnu2.chr3              167344733 260 - 180432695 CAAGGGCCCGCCCATAt------tttttttAGGATGGAGTCCATCCATTTCTCTGCACTGAGTCGGCCCCCAGAGGGCGAGTTGCCCCTTGTATTCTAGAGCCGGCCAGGGCTGCGCAGCACTGGAGGACTCAGCTTCAGGACCCTGGGACCAGCCTCACTGAGCAGCATGCCCTTATATAGAGCGCACAGAACAGGCTTCCACTGCCTGGGACCCGCTTAGCACCatgtcacttagcctctctgggctgcagcttcctcatgtat
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621425 260 -  90373283 CAAAGGCCCGCCCATAT------TTTTTTTAGAATGGAGTCCATCCACTTCTCTGCACTGAGTCGGCCCCCAGAGGGCGAGTTGCCACTTGTATCCTAGAGCCGGCCAGGGCTGCGCAGCACTGCAGGACTCAGCTCCAGGACCCTGGGGCCAGCCTCTTTGAGCAATATGCCCTTATATAGAGCGCACAGAACAGGCTTCCACTGCCTGGGACTCGCTTAGCACcatgtcacttagcctctctgggctgcagcttcctcatgtat
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37426622 248 +  50472720 CAAGAGCCCACCCATACTTTTG-GTTTTTTAGGATGGACACCCTCCGCTTCTCTGCACT--GTCATCCCCCAGAGGGCAAGTTGCCACTTGCATCCTAGAGCCATGCAGGGCCGCCCAGCACTAGAGGACTCTGCTCCGGGTCCCTGGGGCCA--CTCGTTGATCAGCATGCCCTCCTGAAGAGCACACACAACAGGCTTCCACTGCCTA--------CTAGCACCACGTCACTTAG-CGCTCTGGGCTGCAGCTT----GTGTAT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28041252   0 +  39895921 C
e rheMac3.chr3              185123406 1166 - 198365852 I
e macFas5.chr3              178964744   0 - 192294377 C

a score=97947.000000
s hg38.chr21_GL383581v2_alt     23666 56 +    116689 aaaatgaaacaactgagctaTAAGCTGGAGCCTGTGAAGAGGAGCAG-CCGTGAGGG
s panTro4.chr21              19527346 57 +  32799110 aaaatgaaacaactgagctaTAAGCTGGAGCCTGTGAAGAGGAGCAGCCCGTGAGGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423763 56 +  48394510 aaaatgaaacaactgagctataagctGGAACCTCTGAAGAGGAGCAG-CCGTGAGGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19956404 56 +  32716333 aaaaTGAAACAACTGAGCTATAAGCTGGAGCCTGTGAAGAGGAGCAG-CCGTGAGGG
i nomLeu3.chr25             I 318 C 0
s papAnu2.chr3              167344993 56 - 180432695 aaaatgaaacAACTGAGCTGTAAGCCGGAGCCTGTGAAGACGAGCAG-CCATGAGGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621685 56 -  90373283 aaaatgaaacaactgagctGTAAGCCGGAGCCTGTGAAGACCAGCAG-CCATGAGGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37426870 56 +  50472720 AAAATGAAACAACCGAGCTATAAGCTAGAGCCTGTGAAGAGGAGCAG-CTGTGAGGG
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28041252  0 +  39895921 C
e rheMac3.chr3              185123406 1166 - 198365852 I
e macFas5.chr3              178964744  0 - 192294377 C

a score=265220.000000
s hg38.chr21_GL383581v2_alt     23722 142 +    116689 CCCCCAAGTCCCTTTCCTCCATTTGACCAGAGCATCTGTACTT--GGCTTCCATGATCAAAAGGTTCAAGGATGAAAATGACTCTGAAAGCCACCAATGTGATCTTTGTTCCAGCTGTGAGTCTGtgtgttagggtccccaaga
s panTro4.chr21              19527403 142 +  32799110 CCCCCAAGTCCCTTTCCTCCATTTGACCAGAGCATCTGTACTT--GGCTTCCATGGTCAAAAGGTTCAAGGATGAAAATGACTCTGAAAGCCACCAATGTGATCTTTGTTCCAGCTGTGAGTCTGtgtgttagggtccccaaga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423819 142 +  48394510 CCCCCAAGTCCCTCTCCTCCATTTGACCAGAGCATCTGTACTT--GGCTTCCATGATCAAAAGGTTCAAGGATGAAAATGACTCTGAAAGCCACCAGTGTGATCTTTGTTCCAGCTGTGAGTCTGTGTGTTGTGGTCCCCAAGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19956460 142 +  32716333 CCCCCAAGTCCCTTTCCTCCATTTGACCAGAGCATCTGTACTT--GGCTTCCATGATCAAAAGGTTCAAGGATGAAAATGACTCTGAAAGCCACCAATGTAATCTTTGTTCCAGCTGTGAGTCTGtgtgttagggtccccaaga
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167345049 138 - 180432695 CCCCCAAGCCCCTTTCCTCCATCAGACCAGAGCATCTGTACTT--GGCTTCCATGATCAAAAG--TCAAGGATGAAAATGACTCTGAAAGCCACCGACAGGATCTTTGTTCCAGCTGTGAGTC--TGTGTTGCGTTCCCCAAGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621741 138 -  90373283 CCTCCAAGCCCCTTTCCTCCATCAGACCAGAGCATCTGTACTT--GGCTTCCATGATCAAAAG--TCAAGGATGAAAATGACTCTGAAAGCCACCGACGGGATCTTTGTTCCAGCTGTGAGTC--TGTGTTGGGTTCCCCAAGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37426926 141 +  50472720 ACCCCAAGCCCCTTTCC-CCATTTGACCAAAGCCTCTGTACTC--AGCATCCGTGATCAAAAGGATCAAGGATGAAAATGACTCTGAAAGCCACAGATAGGATCTTTGTTCCAGCTGTGAGTCTGtgtgttagggtccccaaaa
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28041252 131 +  39895921 CCCCCCCGCCCCCGCTCCCCA----ACCAGAGCAGCTATACTTTGGATTTCTATGAACAGAAGACTCTAGGGCTCACATGAGTTTGAGAGCCACCAAAAT-ATCCCCATCCCATCTGTGAGTCTATg--------tccccagga
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e rheMac3.chr3              185123406 1166 - 198365852 I
e macFas5.chr3              178964744   0 - 192294377 C

a score=310456.000000
s hg38.chr21_GL383581v2_alt     23864 153 +    116689 -ccca-ccctaga-tcgctcaaaggac-----------tcccaggactcagcacagagtc--acactcTGAtttc---------------gtt-------------------------ttgagacagaatttca------------------ctctgtctcccagg--------gtagagtgcagtgcca------caatctcgg-----------------ctcacgggttcaagagattttcctgtctcagcctcc
s panTro4.chr21              19527545 157 +  32799110 -ccca-ccctaga-tcgctcaaaggac-----------tcccaggactcagcacagagtc--acactcTGAtttc-----------ttttgtt-------------------------ttgagacagaatttta------------------ctctgtctcccagg--------gtagagtgcagtgcca------caatctcgg-----------------ctcacgggttcaagagattttcctgtctcagcctcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34423961 159 +  48394510 -CCCA-CCCTAGA-TCGCTCAAAGGAC-----------TCCCAGGACTCAGCACAGtttcttttgttttgttttg-----------ttttgtt-------------------------gtaagacagaatttca------------------ctctgtcgcccagg--------gtggagtgcagtgcca------caatctcgg-----------------ctcacaggttcaagagatcctcctgtctcagcctcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19956602 157 +  32716333 -ctca-ccctaga-tcgctcaaaggac-----------tcccagggctcagcacagagtc--acactcTGAtttc-----------ttttgtt-------------------------ttgagacagaatttca------------------ctctgtcgcccagg--------gtggagtgcagtgcca------caatctcgg-----------------ctcacgggttcaagagattctcctgtctcagcctcc
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178964744 165 - 192294377 -CCCA-CCCTAGA-TCGCTCAAAGGAC-----------TCCCAGGGCCCAGCACAG--CC--ACGCTCTCAtttc-ttttgttttgttttgtt-------------------------ctgagacagagtttca------------------ctgtgtcgcccagg--------gtggagtgcagtgcca------cagtctcgg-----------------ctcatgggttcaagagattcttctgtctcagcctcc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167345187 165 - 180432695 -CCCA-CCCTAGA-TCGCTCAAAGGAc-----------tcccagggcccagcacag--cc--ACGctctcatttc-ttttgttttgttttgtt-------------------------ctgagacagagtttca------------------ctgtgtcgcccagg--------gtggagtgcagtgcca------cagtcTCGG-----------------Ctcatgggttcaagagattctcctgtctcagcctcc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31621879 165 -  90373283 -CCCA-CCCTAGA-TCACTCAAAGGAC-----------TCCCAGGGCCCAGCACAG--CC--ACACTCTCAtttc-ttttgttttgttttgtt-------------------------ctgagacagagtttca------------------ctgtgtcgcccagg--------gtggagtgcagtgcca------cagtctcgg-----------------ctcacgggttcaagagattctcctgtctcagcctcc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37427067 184 +  50472720 -cccacccctaga-ccactcaaaggac-----------tcccaggactcagcacagagtc--atactctgatttc-ttttgtttctttttgtt-------------------------ttgagacagagtttca------------------ctctgttg-ccagg--------ctggagtgcagtgaca------caatctcggctcattgcaacctctgcctcataggttcaagcgattctcctgcctcagcctcc
i calJac3.chr21             C 0 I 866
s canFam3.chr31              28041383 225 +  39895921 acaac-ccctagatttgctggaaggacccatgggaccttcccatggttgtgttcatggct--atggtttattattattattttttaatttatttatttatgatagtcagagagagagattgaggcagagacacaggcagagggagaagcaggctccatgcaccgggagcccgatgtgggattcgatcccgggtctccaggatcgc-----------------gccctgggccaaagg-------------caggcgcc
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e rheMac3.chr3              185123406 1166 - 198365852 I

a score=761946.000000
s hg38.chr21_GL383581v2_alt     24017 383 +    116689 --ACATCTGTGCC------TGGCCcata---ctctga-ttttttatagcaaaaggatgcaaagcaaaatcg-gcaaagggaagaggcacatggaggaaagtccgcaggtgtccaggggtaggcttccaggagcccttcctgagctgagtcacgcaggatacacttcattgctccaccagcaagctgtgactgcacatgtgaactg--ttgtctgccagggaggcttatgagagacccagcgcccagggctttttctgggggctggccacatacgcaccctctgtgtagcgtatgccaaaattccg-actcccagaaggaaaacagatgttcctcataaagaaaacacattgtgcaaacagtgtagggacggt-aagccacc-ttaccagtttgggaatggg
s panTro4.chr21              19527702 383 +  32799110 --ACATCTGTGCC------TGGCCCACA---ctctga-ttttttacagcaaaaggatgcaaagcaaaatcg-gcaaagggaagaggcacatggaggaaagtccgcaggtgtccaggggtaggcttccaggagccctcccggagctgagtcacgcaggatacacttcattgctccaccagcaagctgtgactgcacatgtgaactg--ttgtctgccagggaggcttatgagagacccagcgcccagggctttttctgggggctggccacatacgcaccctctgtgtagcgtatgccaaaattccg-actcccagaaggaaagcagatgctcctcataaagaaaacacattgtgcaaacagtgtagggacagt-aagccacc-ttaccagtttgggaatggg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34424120 383 +  48394510 --ACATCTGTGCC------TGGCCCACA---ctctga-ttttttacagcaaaaggatgcaaagcaaaatca-gcaaagggaagaggcgcatggaggaaagtctgcaggtgtccaggggtaggcttccaggagccctccccgagctgagtcacacaggatatacttcattcctccaccagcaagctgtgactgcacatgtgaactg--ttgtctgccagggaggcttatgagagacccagcgcccagggctttttccgggggctagccacatacgcaccctctgtctagcatatgccaaaattccg-actcccagaaggaaagcagatgctcctcataaagaaaacacattgtgcaaacagtgtagggacagt-aagccacc-ttaccagtttgggaatggg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19956759 386 +  32716333 --GCATCTGTGCC------TGGCCCACA---ctctga-tcttttacagcaaaaggatgcaaagcaaaatcatgtaaagggaagaggcacatggaggaaagtctgcaggtgtccaggggtaggcttccaggaggcctccctgagctgagtcacgcaggatacacttcattcctccgccagcaagctgtgactgtacctgtgaactgttttgtctgccagggaggcttatgagagacccagcacccagggttttttctgggggctagccacatacgcaccctctgtgtagcgtatgccaaaattcca-actcccagaaggaaagcggatgctcctcataaagaagacacattgtgcatacagtgtaaggacagt-aagccacc-ttaccagtttgggaatggg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178964909 381 - 192294377 --cCATCTGTGCC------TGGCCCACA---ctctga-ttttttacagcaaaaggatgcaaagcaaaatcg-gcaaagggaagaggcacatgaaggaaagtccacgggtgtccaggggtgggcttctgggagccctccccgagcggagtcacgcaggacacacttcattcctccaccagcaagctgtgactgcacgcgtgaactg--ctgtctgccagggaggcttgtgagagacccagcgcccagggtttttact-ggcgctagccacatacgcaccttctgtctagcgtatgccaaaattcca-actcccagaaggaaagcagatgctcctcataaagaacacacac--tgcaaacagtgtagggacagtaaagccacc-ttaccagtttgggaatggg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167345352 381 - 180432695 --ccatctgtgcc------tggcccaca---ctcTGA-TTTTTTACAGCAAAAGGATGCAAAGCAAAATCG-GCAAAGGGAAGAGGCACATGAAGGAAAGTCCGCAGGTGTCCAGGGGTGGGCTTCTGGGAGCCCTCCCCGAGCGGAGTCACGCAGGACACACTTCATTCCTCCACCAGCAAGCTGTGACTGCACGCGTGAACTG--CTGTCTGCCAGGGAGGCTTGTGAGAGACCCAGCGCCCAGGATTTTTACT-GGGGCTAGCCACATACGCACCTTCTGTCTAGTGTATGCCAAAATTCCA-actcccagaaggaaagcagatgCTCCTCATAAAGAAGACACAC--TGCAAACAGTGTAGGGACAGTAAAGCCACC-TTACCAGTTTGGGAATGGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31622044 382 -  90373283 --cCATCTGTGCC------TGGCCCACA---ctctgatttttttacagcaaaaggatgcaaagcaaaatcg-gcaaagggaagaggcacatgaaggaaagtctgcaggtgtccaggggtgggcttctgggagccctccccgagcggagtcacacaggacacacttcattcctccaccagcaagctgtgactgcacatgtgaactg--ttgtctgccagggaggcttgtgagagacccagcgcccagggtatttact-ggggctagccacatacgcaccttctgtctagcgtatgccaaaattcca-actcccagaaggaaagcagatgctcctcataaagaagacacac--tgcaaacagtgtagggacagtaaagccacc-ttaccagtttgggaatggg
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28041608 370 +  39895921 aaaccgctgtgccacccagggatccccatggctatgg-tttattatagaagaaggacacaaagcaaaatca-gcaaggggaagaggcacatgggccaaactccagaggaatccagatacaagtttcgaagaactttctcccaaaagactcagacaggacacacttaattcctccaacaacaaaccgtga--ggacatgtgaaatg--tcctctg---gggaatcttatcagagactctgcgcccaggggctttatt-ggaa------atacaggcctcttttccctagcacatatcaaaattccagactcctagaaggagagcaggtgttcagaataaaaaa--------------acattgtttgtatgat-aagatgccaatactagttagggaacggg
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e rheMac3.chr3              185123406 1166 - 198365852 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=433365.000000
s hg38.chr21_GL383581v2_alt     24400 239 +    116689 agggataaacttgaaatccaaattcccaggctgggcgcggtggcttacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggggttcgagacaggcctggctagcatggtgaaaacccatctctact-aaaaatacaaaaattagccaggcgtggtggtgggcacctgtgatcccagttactcaggaggctgaggcaggagaattgcttgaacctggga
s panTro4.chr21              19528085 239 +  32799110 agggataaacttgaaatccaaattcccaggctgggcgcggtggcttacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggggttcgagacaggcctggctagcatggtgaaaacccatctctact-aaaaatacaaaaattagccaggcgtggtggtgggcacctgtgatcccagttactcaggaggctgaggcaggagaattgcttgaacctggga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34424503 240 +  48394510 agggataaacttgaaatccaaattcccaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacttgaggtcaggggttcgagacagacctggctagcatggtgaaaacccatctctactaaaaaatacaaaaattagccaggcgtggtggtgggcacttgtgatcccaattactcaggaggctgaggcaggagaattgcttgaatctggga
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957145 238 +  32716333 agggataaacttgaaatccaaattcccaggctgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggtcaggggttcgagacaggcctggctagcatggtgaaaacccatctctact-aaaaatacaaaaattagccaggcgtggtggtgggcacctgtgat-ccagttactcaggaggctgaggcaggagaattgcttgaacctggga
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178965290 239 - 192294377 aggcataaacctgaaatccaaattcccaggctgggcgccgtggctcacgcctgaaaccccagcactgtgggaggccgaggcaggcggatcacttggggtcaggggttcgagacaggcctggccagcatggtgaaaacccatctctact-aaaaatacaaaaattagccaggcgttgtggcgggcccctgtgatcccagttacttgggaggctgaagcaggagaatcgcttgaacctggga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167345733 239 - 180432695 AGGCATAAACCTGAAATCCAAATTCccaggctgggcgccgtggctcacgcctgaaaccccagcactgtgggaggccgaggcaggcggatcacttggggtcaggggttcgagacaggcctggccagcatggtgaaaacccatctctact-aaaaatacaaaaattagccaggcgtggtggcgggcctctgtgatcccagttacttgggaggctgaagcaggagaatcgcttcaacctggga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31622426 239 -  90373283 aggcataaacctgaaatccaaatttccaggctgggcgccgtggctcatgcctgaaaccccagcactgtgggaggctgaggcaggtggatcacttggggtcaggggtttgagacaggcctggccagcatggtgaaaacccatctctact-aaaaatacaaaaattagccaggcgtggtggcgggcccctgtgatcccagttacttgggaggctgaagcaggagaatcgcttcaacctggga
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28041978   0 +  39895921 C
e rheMac3.chr3              185123406 1166 - 198365852 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=127720.000000
s hg38.chr21_GL383581v2_alt     24639 76 +    116689 ggcagaggttgcagtgagtcgagatcacactactgcactccagcctgggcaacggagcaagactccgtctc-aaaaa
s panTro4.chr21              19528324 74 +  32799110 ggcagaggttgca--gagtcgagatcacaccactgcactccagcctgggcaacggagcaagactccgtctc-aaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34424743 77 +  48394510 ggcagaggttgcagtgagtcgagatcacaccactgcactccagcctgggcaacggagcaagactccgtctcaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957383 76 +  32716333 ggtggaggttgcagtgagtcgagatcacgccactgcactccagcctgggcaactgagcaagactccgtctc-aaaaa
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178965529 76 - 192294377 ggtggaggttgcagcgagttgagatcgcaccactgcactccagcctgggcaatggagcaagactccgtctc-aaaca
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167345972 76 - 180432695 ggtggaggttgcagcgagttgagatcgcaccactgcactccagcctgggcaatggagcaagactccgtctc-aaaca
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31622665 76 -  90373283 ggtggaggttgcagcgagttgagatcgcaccactgcactccagcctgggcaatggagcaagactccgtctc-aaaca
i chlSab2.chr2              C 0 I 19
s canFam3.chr31              28041978 37 +  39895921 ggtaggggacgcagagagggga-----cacttctggattcca-----------------------------------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e rheMac3.chr3              185123406 1166 - 198365852 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=3779.000000
s hg38.chr21_GL383581v2_alt     24715 15 +    116689 acaaacaaaca-aaaa
s panTro4.chr21              19528398 15 +  32799110 acaaacaaaca-aaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34424820 16 +  48394510 aaaaacacacacacac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957459 12 +  32716333 aaaaaaaaaaa-a---
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178965606 16 - 192294377 acacacacacacacac
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167346049 16 - 180432695 acacacacacacacac
i papAnu2.chr3              I 1 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28042015  0 +  39895921 C
e rheMac3.chr3              185123406 1166 - 198365852 I
e calJac3.chr21              37427251 866 +  50472720 I
e chlSab2.chr2               31622741 19 -  90373283 I

a score=3159.000000
s hg38.chr21_GL383581v2_alt     24730 3 +    116689 acg
s panTro4.chr21              19528413 3 +  32799110 aca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34424836 3 +  48394510 aca
i ponAbe2.chr21             C 0 C 0
s macFas5.chr3              178965622 3 - 192294377 aca
i macFas5.chr3              C 0 I 68
s papAnu2.chr3              167346065 3 - 180432695 acg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31622760 3 -  90373283 acg
i chlSab2.chr2              I 19 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28042015 0 +  39895921 C
e rheMac3.chr3              185123406 1166 - 198365852 I
e calJac3.chr21              37427251 866 +  50472720 I
e nomLeu3.chr25              19957471 0 +  32716333 C

a score=462296.000000
s hg38.chr21_GL383581v2_alt     24733 170 +    116689 cacacaaattcccagatgtcagctaagggttgacctggaaatcaggcccttcaaagggcattagtgttaggcctgttacgttagctcttctgcaGTC--TGTGACTCTAAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAATTTTTGTCCTTAAAATCG
s panTro4.chr21              19528416 170 +  32799110 cacacaaattcccagatgtcagctaagggttgacctggaaatcaggcctttcaaagggcattggtgttaggcctgttacgttagctcttctgcaGTC--TGTGACTCTGAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAATTTTTGTCCTTAAAATCG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34424839 172 +  48394510 cacacaaattcccagatgtcagctaagggttgaccttgaaatcgggcccttcaaagggcattagtgttaggcctgttacgttagctcttctgcaGTCTGTGTGATTCTGAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAGTTTTTGTCCTTAGAATCG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957471 167 +  32716333 ---acaaattcccacatgtcacctaagggtcgaccttgaaatcaggcccttctaagggcattagtgttaggcctgttacgttagctcttctgcaGTC--TGTGATTCTGAATTTTAGGAATTCCATTTGAATGCTGAAATAAACCCAAAGGGAATTTTTGTCCTTAAAATCG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185124572 170 - 198365852 cacacaaattcccagatgtcagccaagggtcgaccttgaaatcaggcccttcaaaggccattagtgttaggcctgttacattagctcttctgcaGTC--TGTGATTCTGAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAATTTTCATCCTTAAAATCG
i rheMac3.chr3              I 1166 C 0
s macFas5.chr3              178965693 170 - 192294377 cacacaaattcccagatgtcagccaagggtcgaccttgaaatcaggcccttcaaaggccattagtgttaggcctgttacattagctcttctgcaGTC--TGTGATTCTGAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAATTTTCATCCTTAAAATCG
i macFas5.chr3              I 68 C 0
s papAnu2.chr3              167346068 170 - 180432695 cacacaaattcCCAGATGTCAGCCAAGGGTCGACCTTGAAATCAGGCCCTTCAAAGGCCATTAGTGTTAGGCCTGTTACATTAGCTCTTCTGCAGTC--TGTGATTCTGAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAATTTTCATCCTTAAAATCG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31622763 170 -  90373283 cacacaAAttcccagatgtcagccaagggtcgaccttgaaatcaggcccttcaaaggccattagtgttaggcctgttacattagctcttctgcaGTC--TATGATTCTGAATTTTAGGAATTCCAATTGAATGCTGAAATAAACCCAAAGGGAATTTTCATCCTTAAAATCG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28042015 146 +  39895921 ------agttcccagatgctagc-gatggttacccttgcaagcaggccctcc-aaggacagtggtctcaggtc---------------tCTGCAATC--TGTTATTCTAAATTCTAGAAATGCCAGCTGGTGGCTGAAATAAACCCCAAAGGAAGTTT-GTACTTAAAATTG
i canFam3.chr31             C 0 I 250
e mm10.chr16                 91560176 225 +  98207768 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=1869.000000
s hg38.chr21_GL383581v2_alt     24903 2 +    116689 TG
s panTro4.chr21              19528586 2 +  32799110 TG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425011 2 +  48394510 TG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957638 2 +  32716333 TG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185124742 2 - 198365852 CG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178965863 2 - 192294377 CG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167346238 2 - 180432695 CA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31622933 2 -  90373283 CA
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28042161 250 +  39895921 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=253015.000000
s hg38.chr21_GL383581v2_alt     24905 94 +    116689 TCTTCCTCTGCCCTGGCAGTCCAACACCATTAAACAGAAGAAAAGAAAATGTAAAACCATCAAGTAATACTATTATTCATAGATCATACAATTA
s panTro4.chr21              19528588 94 +  32799110 TCTTCCTCTGCCCTGGCAGTCCAACACCATTAAACAGAAGAAAAGAAAATGTAAAACCATCAAGTAATACTACTATTCATAGATCATACAATTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425013 94 +  48394510 TCTTCCTCTGCCCTGGCAGTCCAACACCATTAAACAGAAGAAAAGAAAATGTAAAACCATCAAGTAATACTACTATTCATAGATCATACAATTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957640 94 +  32716333 TCTTCCTCTGCCCTGGCAGTCCAACACCATTAAACAGAAGAAAAGAAAATGTAAAACCATCAAGTAATACTACTATTCGTAGATCATACAATTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185124744 93 - 198365852 TCTTCCTCTGCCCTGGCAGT-CACCACCACTAAACAGAAGAAAAGATAATGTAAAACCATCAAGTAATACTGCAATTCATAGATAATACAATTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178965865 93 - 192294377 TCTTCCTCTGCCCTGGCAGT-CACCACCACTAAACAGAAGAAAAGATAATGTAAAACCATCAAGTAATACTGCAATTCATAGATAATACAATTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167346240 93 - 180432695 TCTTCCTCTGCCCTGGCAGT-CACCACCactaaacagaagaaaagataatgtAAAACCATCAAGTAATACTGCAATTCATAGATAATAcaatta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31622935 94 -  90373283 TCTTCCTCTGCCCTGGCAGTCCACCACCACTAAACAGAAGAAAAGATAATGTAAAACCATCAAGTAATACTGCAATTCATAGACAATACAATTA
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28042411 86 +  39895921 TTCTCCTCTGCCCTCGTAGTCCATCACCATTAAACAGAAGAAAAAAAAAT-------CATCTA-TGATCCTACTATTCCTAAGTAATATGatta
i canFam3.chr31             I 250 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=686754.000000
s hg38.chr21_GL383581v2_alt     24999 325 +    116689 Cttttatatttttattttttaattttaatttttcagagacaatttcactctgtcacccaggctggagtgcagtggtgcagtcatagctcactgtagcctccaattcacaggctcaagccatcctcccactttggccttccgagtagctgggacttataggcatgcaccaccatgaccagctta-tttttttatta----ttattttctgtagagacggaggga-gggggtctcactatgttacccaagctcaaactcctggactcaagtgatcctcccacctcagcctcccaaagtgctggaattacaggcatgagccaccatgcctggcc
s panTro4.chr21              19528682 324 +  32799110 Tttttatatttttattttttaattttaatttttcagagacaatttcactctgtcacccaggctggagtgcagtggtgcagtcatagctcactgtagcctccaattcccaggctcaagccatcctcccactttggccttccaagtagctgggac-tataggcatgcaccaccatgaccagctta-tttttttatta----ttattttctgtagagacggaggga-gggggtctcactatgttacccaagctcaaactcctggactcaagtgatcctcccacctcagcctcccaaagtgctggaattacaggcatgagccaccatgcctggcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425107 320 +  48394510 tttttatatttttatt------ttttaatttttcagagacaatttcactctgtcacccaggctggagtgcagtggtgcagtcatagctcactgtagcctccaattcccaggctcaagccatcctcccactttggcctcccgagtagctgggac-tataggcatgcaccaccatgatgagcttattttttttatta----ttattttctgtagagacggagggaggggggtctcactatgttacccaagctcaaactcctgggctcaagtgatcctcccacctcagcctcccaaaatgctggaattacaggcatgagccaccatgcctggcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19957734 303 +  32716333 TTTTTATATTTTT-----TTAATTTTGATTTTTTAGA-------------------ccaggctggagtgcagtagtgcaatcatagctcactgtagcctccaattcccaggctcaagccatcctcccactttggcctcccgagtagctggg---tataggcatgcaccaccatgactggcttattattattattgttttttattttctgtagagacggaggga-gggggtctcactatgttacccaagctcaaactactgggctcaagtaatcctcccacctcagcctcccaaagtgctggaattacaggcatgagccaccatgcctggcc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185124837 313 - 198365852 TGtttgtatttttattttttaactttaatttttcagagacaattccactctctcacccaggctggagtgcagtggtgcaatcagagctcactgtagcctccaattcccaggctcaagctgtcctcccactttggcctcccaagcagctgggac-tataggcatgcaccaccatgaccagctta-tttatttattt-------ttttccatagagacgcgggga-gggggtctcactatgttacccaagctcaaa--------ctcaagtgattgtcccacctcagcctcccgaagtgctggaattacaggcatgagccaccacgcctggcc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178965958 313 - 192294377 TGTTTGTAtttttattttttaactttaatttttcagagacaattccactctctcacccaggctggagtgcagtggtgcaatcagagctcactgtagcctccaattcccaggctcaagctgtcctcccactttggcctcccaagcagctgggac-tataggcatgcaccaccatgaccagctta-tttatttattt-------ttttccatagagacgcgggga-gggggtctcactatgttacccaagctcaaa--------ctcaagtgattgtcccacctcagcctcccgaagtgctggaattacaggcatgagccaccacgcctggcc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167346333 313 - 180432695 tgtttgtatttttattttttaactttaatttttcagagaCAATtccactctctcacccaggctggagtgcagtggtgcaatcatagctcactgtagcctccaattcccaggctcaagccgtcctcccactttggcctcccaagcagctgggac-tataggcatacaccaccatgaccagctta-tttatttattt-------tttttcatagagacacgggga-gggggtctcactatgttacccaagctcaaa--------ctcaagtgattgtcccacctcagcctcccgaagtgctggaattacaggcatgagccaccacgcctggtc
i papAnu2.chr3              C 0 I 123
s chlSab2.chr2               31623029 309 -  90373283 TGTTTGTAtttttattttttaactttaatttttcagagataattcca--ctctcacccaggctggagtgcagtggtgcaatcatagctcactgtagcctctgattcccaggctcaagccgtcctcccacttcgtcct--catgcagctgggac-tataggcatgcaccaccatgaccagctta-tttatttattt-------ttttccatagagacgcgggga-gggggtctcactatgttacccaagctcaaa--------ctcaagtgattgtcccacctcagcctcccgaagtgctggaattacaggcatgagccaccacgcctggcc
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28042497   0 +  39895921 C
e calJac3.chr21              37427251 866 +  50472720 I

a score=7644.000000
s hg38.chr21_GL383581v2_alt     25324 3 +    116689 TAT
s panTro4.chr21              19529006 3 +  32799110 TAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425427 3 +  48394510 TAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19958037 3 +  32716333 TAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185125150 3 - 198365852 TAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178966271 3 - 192294377 TAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167346769 3 - 180432695 tat
i papAnu2.chr3              I 123 C 0
s chlSab2.chr2               31623338 3 -  90373283 TAT
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28042497 0 +  39895921 C
e calJac3.chr21              37427251 866 +  50472720 I

a score=32944.000000
s hg38.chr21_GL383581v2_alt     25327 12 +    116689 TTTTGTATTTTA
s panTro4.chr21              19529009 12 +  32799110 TTTTGTATTTTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425430 12 +  48394510 TTTTGTATTTTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19958040 12 +  32716333 TTTTGTATTTTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185125153 12 - 198365852 TTTTCTATTTTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178966274 12 - 192294377 TTTTCTATTTTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167346772 12 - 180432695 ttttctatttta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31623341 12 -  90373283 TTTTCTATTTTA
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28042497 12 +  39895921 ttttatattttt
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e calJac3.chr21              37427251 866 +  50472720 I

a score=1676761.000000
s hg38.chr21_GL383581v2_alt     25339 527 +    116689  
s panTro4.chr21              19529021 527 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425442 524 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19958052 524 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185125165 530 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178966286 531 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167346784 531 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31623353 531 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37428117 510 +  50472720  
i calJac3.chr21             I 866 C 0
s canFam3.chr31              28042509 520 +  39895921  
i canFam3.chr31             C 0 I 57
e mm10.chr16                 91560176 225 +  98207768 I

a score=250383.000000
s hg38.chr21_GL383581v2_alt     25866 92 +    116689 cgcggtggctcacgcctataatcccagcactttgggaggccgag----------------------gcaggtggatcacctgagatcaggagctcgagaccagcctgggcaaca
s panTro4.chr21              19529548 92 +  32799110 cgcggtggctcacgcctataatcccagcagtttgggaggccgag----------------------gcaggtggatcacctgagatcaggagcttgagaccagcctgggcaaca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34425966 92 +  48394510 cgcggtggctcacgcctgtaatcccagcactttgggaggccgag----------------------gcaggtggattacctgagatcaggagctcgagaccagcctgggcaaca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19958576 92 +  32716333 cacggtggctcacgcctgtaatcccagcactttgggaggccgag----------------------gcaggtggatcacctgaggtcaggagctcgagaccagcctgggcaaca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185125695 84 - 198365852 cgtggtggctcacgcctgtaatcccagcactttgggaggccgagnnnnnnnnnnnnnnnnnnnnnn------------------------------agaccagcctgggcaaca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178966817 92 - 192294377 cgtggtggctcatgcctgtaatcccagcactttgggaggccgag----------------------gcaggtggatcacctgaggtcaggagctcaagaccagcctgggcaaca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167347315 92 - 180432695 cgtggtggctcacgcctgtaatcccagcactttgggaggccgag----------------------gcaggtggatcacctgaggtcaggagctcaagaccagcctgggcaaca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31623884 92 -  90373283 cgtggtggctcacgcctgtaatcccagcactttgggaggccgag----------------------gcaggtggatcacctgaggtgaggagctcaagaccagcctgggcaaca
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37428627 91 +  50472720 cctggtggctcatgcctgtaat-ccagcactttgggaggccgag----------------------gcaggtgcatcacctgaggtcagcagtgcgagaccagcctgggcaaca
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e canFam3.chr31              28043029 57 +  39895921 I

a score=42242.000000
s hg38.chr21_GL383581v2_alt     25958 14 +    116689 tggtgaaaccctgt
s panTro4.chr21              19529640 14 +  32799110 tggtgaaaccctgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34426058 14 +  48394510 tggtgaaaccctgt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19958668 14 +  32716333 tggtgaaaccctgt
i nomLeu3.chr25             C 0 M 100
s rheMac3.chr3              185125779 14 - 198365852 tggggaaaccctgt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178966909 14 - 192294377 tggggaaaccctgt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167347407 14 - 180432695 tggggaaaccctgt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31623976 14 -  90373283 tggggaaaccctgt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37428718 14 +  50472720 tggtgaaaccctct
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28043086 14 +  39895921 TTTTCAAATTtttt
i canFam3.chr31             I 57 C 0
e mm10.chr16                 91560176 225 +  98207768 I

a score=322456.000000
s hg38.chr21_GL383581v2_alt     25972 146 +    116689 ttctactaaaaatacaaaaatgagccagacatgatggtgggtgtctata-atcccaactactcaggagttggaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccgaggtcgcaccattgcggtccagcctgg
s panTro4.chr21              19529654 146 +  32799110 ttctactaaaaatacaaaaatgagccagacatgatggtgggtgtctata-atcccaactactcaggagttggaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagctgaggtcgcaccattgcgatccagcctgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34426072 146 +  48394510 ctctactaaaaatacaaaaatgagccggacatgatggtggatgtgtata-atcccagctactcaggagttggaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagctgaggtcgcaccattgcgatccagcctgg
i ponAbe2.chr21             C 0 I 646
s rheMac3.chr3              185125793 146 - 198365852 ctctactaaaaatacaaaaatgagctggacgtggtggtgggcacctata-atcccagcaactcaggagttggaggcaggagaattgcttgaacctgggaagcggaggttgcagtgagctgaggttgcaccactgcaatccagcctgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178966923 146 - 192294377 ctctactaaaaatacaaaaatgagctggacgtggtggtgggcacctata-atcccagcaactcaggagttggaggcaggagaattgcttgaacctgggaagcggaggttgcagtgagctgaggttgcaccactgcaatccagcctgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167347421 146 - 180432695 ctctactaaaaatacaaaaatgagctggacgtggtggtgggcacctata-atcccagcaactcaggagttggaggcaggagaattgcttgaacctgggaagcggaggttgcagtgagctgaggttgcaccactgcaatccagcctgg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31623990 146 -  90373283 ctctactaaaaatacaaaaatgagctggatgtggtggtgggcacctata-atcccagctactcaggaattggaggcaggagaattgcttgaacatgggaagcggaggttgcagtgagctgaggttgtgccactgccatccagcctgg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37428732 146 +  50472720 ctctactaaaagtacaaaaatgagctgggcatcgtggcgggtgcctgta-gtcccagctactcgggagtcggaggcaggagaatcacttgaacccaggaggcaggggttgcaatgagccgaggtcacaccaatgcactccagtctag
i calJac3.chr21             C 0 I 2
s canFam3.chr31              28043100  95 +  39895921 ttttact----------------------------------tatttatgtattttatttatttatgtgttagagagag----agtgcgcaggtggagaaggaggggg-----acgagcagactcctcgctg---------agcgtgg
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e nomLeu3.chr25              19958682 100 +  32716333 M

a score=483113.000000
s hg38.chr21_GL383581v2_alt     26118 314 +    116689 -tgacagagcgaaactccatctc-aaaaaaaa-----------------------aaagaaatacaaaa--------TGtttgttttgagatggagtcttgctct-tcatccaggc----------tggcgcaatctcagctcactgcaccctctgcctcctggtccaagtgattctcctccctcagcctcccatgtagctgggattacaggtgtgtgccaccacatccagctaatttttgtacttttagtagagactgggttttgcaatgttggccaggctggtctcttaactcctgacctcaggtgatccacccaccctggcctcccaaagtggtgggattataggcgtgagccac
s panTro4.chr21              19529800 318 +  32799110 -tgtcagagcgaaactccatctcaaaaaaaaa-----------------------aaagaaatacaaaaT----Gtttgtttgttttgagatggagtcttgctct-tcatccaggc----------tggcgcaatctcggctcactgcaccctctgcctcctggtccaagtgattctcctccctcagcctcccatgtagctgggattacaggtgtgtgccaccacatccagctaatttttgtacttttagtagagactgggttttgcaatgttggccaggctggtctc-gaactcctcacctcaggtgatccacccaccttggcctcccaaagtggtgggattacaggcgtgagccac
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185125939 354 - 198365852 -tgacagagcgaaactccatctcaaaaaaaaaaaaaaaaaaaa--gagaagaaaGAAAGAAATACAAAATATTAGtttgtttgttttgagatacagtcttgctctgtcacccaggctggagtgcagtggcacagtcttggctcactgcagcctccgcctcctggtccaagtgattctcctccgtcagcctcccatgcagctgggattacaggtgtgcgccaccacatccagctaatttttgtacttttagtggagacagggttttgagatgtttgccaggctggtctc-caactcctgacctcaggtgatccgcccaccttggcctcccaaagtggtgggattacaggcgtgagccac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178967069 353 - 192294377 -tgacagagcgaaactccatctcaaaaaaaaaaaaaaaaaaga---agaagaaaGAAAGAAATACAAAATATTAGtttgtttgttttgagatacagtcttgctctgtcacccaggctggagtgcagtggcacaatcttggctcactgcagcctccgcctcctggtccaagtgattctcctccgtcagcctcccatgcagctgggattacaggtgtgcgccaccacatccagctaatttttgtacttttagtggagacagggttttgagatgtttgccaggctggtctc-caactcctgacctcaggtgatccgcccaccttggcctcccaaagtggtgggattacaggcgtgagccac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167347567 356 - 180432695 -tgacagagcgaaactccatctcaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagaaatacaaaatattagtttgtttgttttgagatgcagtcttgctctgtcacccaggctggagtgcagtggcgcaatcttggctcactgcagcctccgcctcctggtccaagtgattctcctccgtcagcctcccatgcagctgggattacaggtgtgcgccaccacatccagctaatatttgtacttttagtggagacagggttttgtgatgtttgccaggctggtctc-caactcctgacctcaggtgatccgcccaccttggcctcccaaagtggtgggattacaggcgtgagccac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31624136 351 -  90373283 -tgacagagcaaaactctatctcaaaaaaaaaaaaaaaaaa-----agaaaaaaaaaagaaatacaaaaTACTAGtttgttttttttgagatgcagtcttgctctgtcacccaggctggagtgcagtggcacaatcttggctcactgcagcctccgcctcctggtccaagtgattctcctccgtcagcctcctgtgcagctgggattacaggtgtgtgccaccacatccagctaatttttgtacttttagtggagacagggttttgcgatgtttgccaggctggtctc-caactcctgacctcaggtgatcagcccaccttggcctcccaaagtggtgggattacaggcgtgagccac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37428880 346 +  50472720 -aaggagagtgaaactccatctaaaaaaaaaaaaaaaaTACAC------ACACACACATACACACAAAATATTA----Gtttattttgagatggagtctcgctctatcactcaagctggagtgcagtgacgcaatatctgctcactgcatcctccgcctcctggtacaagggattttcctccctcagcctcccatgtagctgggattacaggtgcatgccaccagacccagctaatttttatatttttagtagagacagggttttgtgacattggccaggctggtcac-aaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgagattccaggcgtgagccac
i calJac3.chr21             I 2 C 0
s canFam3.chr31              28043195 104 +  39895921 agcccaacgtgaggctctatctcacaa--------------------------------------------------------ccctgagatcatgacctgagctgaaatccag-----------------------------------------------------------------------------------agttgg--------------------------------------------------------------------------aggct-------taac-------------tgactgagccatccaggtgccccA------------------CTTAAGC---
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e ponAbe2.chr21              34426218 646 +  48394510 I
e nomLeu3.chr25              19958682 100 +  32716333 M

a score=501529.000000
s hg38.chr21_GL383581v2_alt     26432 203 +    116689 cccatccagccCAAAATG------TTAAAGGAG-AAAAAGATTAT-CCTAGAAATTGGGATTTACTGAAGTCTAGT--------------TACTACA----ATGGGCACTCTGAGACCTCACAGCCAGAAACACAGTTCTAAAGCTATCAGCCTCTTTGGCCACACAACACACCAATTTTCACACATAAAATGTGTCCACTGCCAGCCAGTGACCCACTAAAAATGGCA
s panTro4.chr21              19530118 203 +  32799110 cccatccagccCAAAATG------TTACAGGAG-AAAAAGATTAT-CCTAGAAATTGGAATTTACTGAAGTCTAGT--------------TACTACA----ATGGGCACTCTGAGACCTCACAGCCAGAAACACAGTTCTAAAGCTATCAGCCTCTTTGGCCACACAACACACCAATTTTCACACATAAAATGTGTCCACTGCCAGCCAGTGACCCACTAAAAATGGCA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19958783 211 +  32716333 CCCATCCAGCCCAAAATGTTAATTTTAAAGGAGAAAAAAGGTTATCCCTAGAAATTGGAATTTACTGAAGTCTAGT--------------TACTACA----ATGGGCACTCTGAGACCTCACAGACAGAAACACAGTTCTAAAGCTATCAGCCTCTTTGGCCACACAACACACCAATTTTCACACATAAAATGTGTCCACTGCCAGCCAGTGACCCGCTAAAAATGGCA
i nomLeu3.chr25             M 100 C 0
s rheMac3.chr3              185126293 207 - 198365852 cccatccagcTCAAAATGTTAATTTTAGAGGAG-AAAAAGGTTAT-CCTAGAAATTGGGATTTACTGAAGTCTAGT--------------TATTACA----ATGGGCACTCTGAGACCACACAGCCAGAA--ACAGTTCTAAAGCTATCAGCCTCTTTGACCACACAACACACCAGTTTTCACACATACAATGTGTCCACTGCCCGCCAGTGACCCGCTAAAAATGGCA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178967422 207 - 192294377 cccatccagcTCAAAATATTAATTTTAGAGGAG-AAAAAGGTTAT-CCTAGAAATTGGGATTTACTGAAGTCTAGT--------------TATTACA----ATGGGCACTCTGAGACCACACAGCCAGAA--ACAGTTCTAAAGCTATCAGCCTCTTTGACCACACAACACACCAGTTTTCACACATACAATGTGTCCACTGCCCGCCAGTGACCCGCTAAAAATGGCA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167347923 207 - 180432695 cccatccagcccaaaatgttaattttagagGAG-ACAAAGGTTAT-CCTAGAAATTTGGATTTACTGAAGTCTAGT--------------TATTACA----ATGGGCACTCTGAGACCACACAGCCAGAA--ACAGTTCTAAAGCTATCAGCCTCTTTGACCACACAACACACCAGTTTTCACACATACAATGTGTCCACTGCCCGCCAGTGACCCGCTAAAAATGGCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31624487 207 -  90373283 cccatccagccCAAAATGTTAATTTTAGAGGAG-AAAAAGGTTAT-CCTAGAAATTGGGATTTACTGAAGTCTAGT--------------TATTACA----ATGGGCACTCTGAGACCACACAGCCAGAA--ACAGTTCTAAAGCTATCAGCCTCTTTGACCACACAACACACCAGTTTTCACACATACAGTGTGTCCACTGCCCGCCAGTGACCCGCTAAAAATGGCA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37429226 204 +  50472720 cgcatctggccC-AAATGTTAATTTTAATGGAG-AAAAAGGTTAT-CTTAGAGACTGGGATTTATTGAAGTTTAGT--------------TTCTACA----GTGGGCCCTC--AGACCTCACAGCCGGAAGCACAGTTCTAACGCTGTCAGCCTCTGTGG-CACACAGCACACCAA-TTTCACACATAAAATGTGTCCACTGCCAGCCAGTGACCTGCTCAAAATGACG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28043299 200 +  39895921 --------------------AATTTTAAAGGAG--AAAATTTCAT-CCTAGACATTGGAATTGGCTAAATCCCAGTGGCAGGCCCTCCACTGCCACAGCGGGTGGGCCCTCCGAGGGC------CCAGAAACACATCTCTGAAGCCATCAGTGTCTTTCTCCACACGGCTCACCGGATTTCACGTATAAACTGTGTCCACTGCAAGCCAGTGACTCTCTCAAGACAGAA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560176 225 +  98207768 I
e ponAbe2.chr21              34426218 646 +  48394510 I

a score=38200.000000
s hg38.chr21_GL383581v2_alt     26635 14 +    116689 TCTTGTTCTTCTTT
s panTro4.chr21              19530321 14 +  32799110 TCTTGTTCTCCTTT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19958994 14 +  32716333 TCTTGTTCTCCTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185126500 14 - 198365852 TCTTCTTCTCCTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178967629 14 - 192294377 TCTTCTTCTCCTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348130 14 - 180432695 TCTTCTTCTGCTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31624694 14 -  90373283 TCTTCTTCTCCTTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37429430 14 +  50472720 TCTGGTTCTCCTTT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91560401 14 +  98207768 TCTTGTTACCATTT
i mm10.chr16                I 225 C 0
s canFam3.chr31              28043499 14 +  39895921 ACTCTTTATTCTTT
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34426218 646 +  48394510 I

a score=1466981.000000
s hg38.chr21_GL383581v2_alt     26649 426 +    116689 GGTTGTCGTGTTCACAGTGAATTTGAGGAAACATCAGAAAA-GATGTAGGCAGCTTGGCCATGTTC---------------------------------ATTTACATGTGTGCTTG-TGATGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TCCAGAGTGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGAGTCGGGCATTTAAGCAACATATCTTGCTACGAAACAATGGCAGATGGTAAAATATACCTTCTTATGTCCTTTCTGAACTGGGAAAAGAATACTCCTCCAATAGTGAAATCGGGGAATGCTTATGAGGTCATG-----GGTGGTGGGAGTGGGGAGACCCAGTGAGA--AGAGTGCTGAACTG-CAGGAATAATGAGCTTGT----------------GCTGAGATTT--GCAGTAGTGG
s panTro4.chr21              19530335 426 +  32799110 GGTTGTCGTGTTCACAGTGAATTTGAGGAAACATCAGAAAA-GATGTAGGCAGCTTGGCCATGTTC---------------------------------ATTTACATGTGTGCTTG-TGATGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TTCAGAGCGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGAGTCGGGCATTTAAGCAACATATCTTGCTACGAAACAATGGCAGATGGTAAAATATACCTTCTTATGTCCTTTCTGAACTGGGAAAAGAATACTCCTCCAATAGTGAAATCGGGGAATGTTTATGAGGTCATG-----GGTGGTGGGAGTGGGGAGACCCAGTGAGA--AGAGTGCTGAACTG-CAGGAATAATGAGCTTGT----------------GCTGAGATTT--GCGGTAGTGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34426864 421 +  48394510 GGTTGTCGTG-TCACAGTG-ATTTGA-GAAACATCAGAAAAGGATGTAGGCAGC-TGCCCAT-TTC---------------------------------ATCACCATGTGTGCTTG-TG-TG----TTTTAAAACA-GTCAAAGG-CCTTTCAGAAGCAACTCCA-TTCAGTGGATAATTTAAAACCCTTTCAGAGTGTACTGTTTACAAGTCCAGGACACAACTGCTGAGGAACAAAAGTAACATCTTTAGAGTCGGGCATTTAAGCAACATATCTTGCTACGAAACAATGGCAGACGGTAAAATATACTTTCTTATGTCCTTTCTGAACTGGGAAAAGAATACTCCTCCAACAGTGATATCGGGGAATGTTTATGAGGTCATG-----GGTGGTGGGAGTCGGGAGACCCAGTGAGAAGAGAGTGTTGAACTG-CAGGAATAATGAGCTTGT----------------GCTGAGATCT--GCGGTAGTGG
i ponAbe2.chr21             I 646 C 0
s nomLeu3.chr25              19959008 426 +  32716333 GGTTGTCATGTTCACAGTGAATTTGAGGAAACATCAGGAAA-GATGTAGGCAGCTTGGCCGTGTTC---------------------------------ATTTACATGTGTGCTTG-TGATGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGTAACTCCATTTCACTGGATAACTTAAAACCC-TTCAGAGTGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGAGTCGGGCATTTAAGCAACACATCTTGCTACGAAACAATGGCAGATGGTAAAATATACCTTCTCATGTCCTTTCTGAACTGGGAAAAGAATACTCCTCCAATAGTGAAATCGGGGAATGCTTATGAGGTCATG-----GGTGGTGGGAGTGGGGAGACCCAGTGAGAAGAGAGTGCTGAACTG-CAGGAATAATGAGCTTGT----------------GCTGAGATCT--G--GTAGTGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185126514 436 - 198365852 GGTTGTCGTGTTCACAGTGAATTTGAGGAAACATCAGAAAA-GATGGAGGCAGCTTGGCCGTGTTCATTC------------------------AAGGGATTTACATGTGTGCTTG-TGGTGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TTCAGAGTGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGACTGGGGCATTTAAGCAACACATCTTGCTACGAAACGATGGCAGATGGTAAAATATACCTTCTTATGTCCTTTCTGAACTGGG-AAAGAATACTCCTCCAATAGTGAAATCGGGGACCGCCTATGAGGTCATG-----GGTGGTGGGAGTGGGGAGAGCCAGTGAGAAGAGAGTGCTGAACTG-CAGGTGTAATGAGCTTGT----------------GCTGGGATCT--GCGGTCGCGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178967643 436 - 192294377 GGTTGTCGTGTTCACAGTGAATTTGAGGAAACATCAGAAAA-GATGGAGGCAGCTTGGCCGTGTTCATTC------------------------AAGGGATTTACATGTGTGCTTG-TGGTGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TTCAGAGTGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGACTGGGGCATTTAAGCAACACATCTTGCTACGAAACGATGGCAGATGGTAAAATATACCTTCTTATGTCCTTTCTGAACTGGG-AAAGAATACTCCTCCAATAGTGAAATCGGGGACCGCCTATGAGGTCATG-----GGTGGTGGGAGTGGGGAGAGCCAGTGAGAAGAGAGTGCTGAACTG-CAGGTGTAATGAGCTTGT----------------GCTGGGATCT--GCGGTCGCGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348144 436 - 180432695 GGTTGTCGTGTTCACAGTGAATTTGAGGAAACATCAGAAAA-GATGGAGGCAGCTTGGCCGTGTTCATTC------------------------AAGGGATTTACATGTGTGCTTG-TGGTGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TTCAGAGTGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGACTGGGGCATTTAAGCAACACATCTTGCTACGAAACGATGGCAGATGGTAAAATACACCTTCTTATGTCCTTTCTTAACTGGG-AAAGAATACTCCTCCAATAGTGAAATCGGGGACCGCCTATGAGGTCATg-----ggtggtgggagtggggagagccAGTGAGAAGAGAGTGCTGAACTG-CAGGTGTAATGAGCTTGT----------------GCTGGGATCT--GCGGTCGCGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31624708 436 -  90373283 GGTTGTCGTGTTCTTAGTGAATTTGAGGAAACATCAGAAAA-GATGGAGGCAGCTTGGCCGTGTTCATTC------------------------AAGGGATTTACATGTGTGTTTG-TGGTGT---TTTTAAAACAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TTCAGAGTGTACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAAAGTAACATCTTTAGACTGGGGCATTTAAGCAACACATCTTGCTACGAAACAATGGCAGATGGTAAAATATACCTTCTTATGTCCTTTCTGAACTGGG-AAAGAATACTCCTCCAATAGTGAAATCGGGGACTGCCTATGAGGTCATG-----GGTGGTGGGAGTGGGGAGACCCAGTGAGAAGAGAGTGCTGAACTG-CAGGTGTAATGAGCTTGT----------------GCTGGGATTT--GCGGTCGAGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37429444 429 +  50472720 AGCGATCACTTTCACAGTGAATCTCAGGAAAC-TCAGAACA-AATGGAGGCAGCTTGGCCTTGTTCGTTC------------------------AAGTGATTTACGTGTGTGCTTG-TCGTGTTTATTTT----TAGGTCAAAGGCCCTTTCAGAAGCAACTCCATTTCATTGGATAACTTAAAACCC-TTCAGAGTATACTGTTTACAAGTCCAGG-CACAACTGCTTTGGAACAAGAGTAACGT------AAACGGGCACTTAAGCAACACATCTTGCTACAAAATCATGGCAGATGGTAAAATATACCTTCTTATGTCCTTTCTGAACTGGGAATAGAATACTCCTCCAGCAGTGAAATTGGGGAATGCTTATGAGGTCACA-----GGTGGTGGGAATGGGGAGACCCAGTGAGAAGAGCACGCTGAACGG-CAGGGATAATGAGCTTGT----------------GCTGCGATCT--GCGGTAGCAG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91560415 444 +  98207768 ---GGTTGTGTTCACTGTGGATTTGAGGAGTCACTAGAAAA-GCTAGAAGCTGCATGGCCCCAtctgtccctctgcttgtctgtctgtctgtctgtccgtctgACCTGTGTGGCTC-TGGTGC---TGTCTACACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGCAATCTGAAGCCA-TACAGAGTATATTGTTTACAAACTGAGG-CACAACTGATTTTGAAAAACAAAAAAATCCGACCACATGGGCTCTTGAGCAATGTATCCTGTCACGAAACAACAGCAAATGGTAGGACATACCTTCATGTATCCATTACCTGCTGC--AAAAAAGGCTTCTCCTGAAGTGG---TTAGGATGGCATGCTGTGGCATGTGGCTGGTGGTCGGAG--AAGAGACC---------GGAAGTGCTTACCCGACAGGAGAA------TTAT----------------ATTGAGGTCTCAGCAGCAATGG
i mm10.chr16                C 0 I 618
s canFam3.chr31              28043513 449 +  39895921 GGTTTTGATGTTCCCTGCGGATTTGAGGAAATATTGGAAAA-GGTAGAAGGGGCTCAACCGTGTGTGTTC------------------------AGGTAATTTTCATATGTGCTTGTTGGTGT---TTTTTATATAGGTTAAAGGCCCTTTCAGGAGCAACTCCATTGTGTTGAATGACCTGAAGCCC-TTAAGAGAATATTGTTTACAAGTCAAGG-CGCAACTGGTTTGGACAGTTTCAAAGCTCTCTAGACTCGGACATTTAAGCAACGTATCTTGCTACGAAACAGCAGCAGATGGTAACGTAGGACACCTCACGGCCTTTCTGAGCTGGGACAAGAATCCTCCCCAAGTAGTGAAATCAGGGATGGCTTACTAGGTGGAG-----GGACGTAGGAGTGGGGATACCCAGAGAGAAGGG-----CAAGAAG-CAAGGACAATCTCCTTGCTGAGAAGGAAGGAGAAGCTGAGATCG--ACAGTAATAA
i canFam3.chr31             C 0 C 0

a score=163147.000000
s hg38.chr21_GL383581v2_alt     27075 50 +    116689 -AGGCTACCAGACAGCTACC---ACTTGC-TTTATTTCATTACAGGATTGACTTT
s panTro4.chr21              19530761 51 +  32799110 -AGGCTACCAGACAGCTACC---ACTTGCTTTTATTTCATTACAGGATTGACTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34427285 50 +  48394510 -AGGCTGCCAGACAGCTACC---GCTTGC-TTTATTTCATTACAGGATTGACTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19959434 50 +  32716333 -AGGCTGCCAGACAGCTACC---GCTTGC-TTTATTTCATTACAGGATTGACTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185126950 50 - 198365852 -AGGCTGCCGGACAGCTACC---GCTGGC-TTTATTTCATTACAGGATTGACTTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968079 50 - 192294377 -AGGCTGCCGGACAGCTACC---GCTGGC-TTTATTTCATTACAGGATTGACTTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348580 50 - 180432695 -AGGCTGCCGGACAGCTACc---gcttgt-tttatttcattacagGATTGACTTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625144 50 -  90373283 -AGGCTGCCGGACAGCTACC---GCTTGC-TTTATTTCATTACAGGATTGACTTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37429873 50 +  50472720 -AGGCTGCCAGACAGCTACC---ACTTGC-TTTATTTCATTACGGGATTGACTTC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28043962 47 +  39895921 CAGCC--CCAAACAGCTAACGGTGCTTGC-TTGATTTTA-----GGATTGCCTCT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91560859 618 +  98207768 I

a score=711462.000000
s hg38.chr21_GL383581v2_alt     27125 207 +    116689 ---AGCTATTAATGTAAGCATACCAGGTGAGG-GTGGGGGGTAGAG-GG------ACTTGCCCATTTTACTAGGACAGGAATGCTCTTTAAGCAGC--ATG-GATGGAACATTAACTGATGTTTGTGTTGTGCGTAGGAAGATCATTCTGTTCACTTTCGTGTCC-TCTTTTTAGCCTCCACTGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
s panTro4.chr21              19530812 206 +  32799110 ---AGCTATTAATGTAAGCATACCAGGTGAGG-GT-GGGGGTAGAG-GG------ACTTGCCCATTTTACTAGGACAGGAATGCTCTTTAAGCAGC--ATG-GATGGAACATTAACTGATGTTTGTGTTGTGCGTAGGAAGATCATTCTGTTCACTTTCGTGTCC-TCTTTTTAGCCTCCACTGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34427335 206 +  48394510 ---AGCTATTAATGTAAGCATACCAGGTGAGG-GT-GGGGGTAGGG-GG------ACTTGCCCATTTTACTAGGACAGGAATGCTCTTCAAGCAGC--ATG-GATGAAACATTAACTGATGTTTGTGTTGTGCGTAGAAAGATCATTCTGTTCACTTTTGTGTCC-TCTTTTTAGCCTCCACTGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19959484 206 +  32716333 ---AGCTATTCATGTAAGCATACCAGGGGAGG-GT-GGGGGTAGGG-GG------ACTTGCCCATTTTACTAGGACAGGAATGCTCTTTAAGCAGC--ATG-GATGGAACATTAACTGATGTTTGTGTTGTGTGTGGGAAGATCATTCTGTTCACTTTCGTGTCC-TCGTTTTAGCCTCCACTGAGCTTCAGCAAGTCATCCTGATCTCTGTGGGAACATTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185127000 207 - 198365852 ---AGCTATTAACGTAAGCGTACCGGGTGAGG-GT-GGGGATAGGG-GC------ACCTGCCCATTCTACTAGGCCAGGAATGCTTTTTAAGCAGC--ATG-GATGGAACATTAACTGATGTTTGTGTTGTGTGTAGGAAGATCATTCTGTTCACTTTCGTGTCCTTTTTTTTAGCCTCCACCGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968129 207 - 192294377 ---AGCTATTAACGTAAGCGTACCGGGTGAGG-GT-GGGGATGGGG-GC------ACCTGCCCATTCTACTAGGCCAGGAATGCTTTTTAAGCAGC--ATG-GATGGAACATTAACTGATGTTTGTGTTGTGTGTAGGAAGATCATTCTGTTCACTTTCGTGTCCTTTTTTTTAGCCTCCACCGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348630 207 - 180432695 ---AGCTATTAACGTAAGCGTACCGGGTGAGG-GT-CGGGATAGGG-GC------ACCTGCCCATTCTACTAGGCCAGGAATGCTTTTTAAGCAGC--ATG-GATGGAACATTAACTGatgtttgtgttgtgtgtagGAAGATCATTCTGTTCACTTTCATGTCCttttttttAGCCTCCACCGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625194 207 -  90373283 ---AGCTATTAACGTAAGCGTACCGGGTGAGG-GT-GGGGATCGGG-GC------ACTTGTCCATTCTACTAGGACAGGAATGCTTTTTAAGCAGC--ATG-GATGGAACATTAACTGATGTTTGTGTTGTGTGTAGGAAGATCATTCTGTTCACTTTCGTGTCCTTTTTTTTAGCCTCCACCGAGCTTCAGCAAGTCATCCTGATCTCCGTGGGAACATTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37429923 203 +  50472720 ---AGCTATCGCTGTAAGCATACCAGGTGGGG-GC-AGGG-CAGGG-GG------ACTTGTCCCTTTTACTAGGACAGGAATGCTCTTCAAGCAGC--ATG-GACGAAACGTTAGCTGACATTTGTGTTGTGTGTAGGATGGTCATTCTGTTCACTTTCGGGTCT---TCTTTAGCCTCCACCAAGCTTCAGCAAGTCATCCTGATCTCTGTGGGAACATTT
i calJac3.chr21             C 0 I 84
s mm10.chr16                 91561477 189 +  98207768 ---AATTATTAGTTTAAGCGCAT--ATTGAGGCAA-GGGGGTAGAGAGG------GCCTGTGGGTCTTCCTGGGACGAGAAAACGGCCC-AGCAGT--GGGAGATGGGGCGTGGACTGCTGCTGG------------------CGGCTTGCTCACTTCTGTGTCATCTTCTTTAGCCTCCGCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGGGCATCTTC
i mm10.chr16                I 618 C 0
s canFam3.chr31              28044009 211 +  39895921 ACTAGCTACTCATTCAGGCAT-----GTGAGG-CT-GGGTGGAGGA-GGGACAGTATGTGTCCATTTCATGAGGACAGTGAAGC-CTCTAAGCAGTTGGTA-GATCAAGAATGACCTGATATTTATTTCCCGTGTGGGATGAGCCTCTTGTTCACTTTTGTGTCC-TCTTCTTAGCCACTACCAAGCTTCAGCAAATCATCATAATTGCCGTGGGAATCTTT
i canFam3.chr31             C 0 C 0

a score=438390.000000
s hg38.chr21_GL383581v2_alt     27332 122 +    116689 TCGTTGCTGTCGGTGCTGGCAGGAGCCTGTTTCTTCCTGGTCCTGAAATATAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATCCCATTACAGATAGAAGAGGTACGTGTGCA
s panTro4.chr21              19531018 122 +  32799110 TCGTTGCTGTCGGTGCTGGCAGGAGCCTGTTTCTTCCTGGTCCTGAAATACAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATCCCATTACAGATAGAAGAGGTATGTGTGCA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34427541 122 +  48394510 TCGTTGCTGTTGGTGCTGGCAGGAGCCTGTTTCTTCCTGGTCCTGAAATACAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATCCCGTTACAGATAGAAGAGGTACATGTGCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19959690 122 +  32716333 TCATTGCTGTTGGTGCTGGCAGGAGCCTGTTTCTTCCTGGTCCTGAAATACAGAGGTCTGATTAAATACTGGTTTCACACTCCACCAAGCATCCCGTTACAGATAGAAGAGGTACGTGTGCA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185127207 122 - 198365852 TCGTTGCTGTCGGTGCTGGCAGGGGCCTGTTTCTTCCTGGTCCTGAAATACAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATTCCGTTACAGATAGAAGAGGTATGTGTGCA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968336 122 - 192294377 TCGTTGCTGTCGGTGCTGGCAGGGGCCTGTTTCTTCCTGGTCCTGAAATACAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATTCCGTTACAGATAGAAGAGGTATGTGTGCA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348837 122 - 180432695 TCGTTGCTGTCGGTGCTGGCAGGGGCCTGTTGCTTCCTGGTCCTGAAATACAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATTCCATTACAGATAGAAGAGGTATGTGtgca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625401 122 -  90373283 TCGTTGCTGTCGGTGCTGGCAGGGGCCTGTTTCTTCCTGGTCCTGAAATATAGAGGCCTGATTAAATACTGGTTTCACACTCCACCAAGCATTCCGTTACAGATAGAAGAGGTATGTGTGCA
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91561666 122 +  98207768 GCATTGCTGCTCGGCCTGACGGGCGCCTGCTTCACCCTGTTCCTCAAATACCAAAGCCGAGTGAAGTACTGGTTTCAGGCTCCGCCAAACATCCCGGAACAAATCGAAGAGGTCAGTGCGCA
i mm10.chr16                C 0 I 1063
s canFam3.chr31              28044220 122 +  39895921 CTGTTGCTGTTGGCACTGGCAGGGGCCTGTTTCTTCCTGGTCCTGAAATACAAAGGCCTGATAAAATACTGGTTTCACTCTCCGCCAACCATCCCATTACAAATAGAAGAGGTACGTATGCA
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37430126  84 +  50472720 I

a score=3600.000000
s hg38.chr21_GL383581v2_alt     27454 1 +    116689 C
s panTro4.chr21              19531140 1 +  32799110 C
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34427663 1 +  48394510 C
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19959812 1 +  32716333 C
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185127329 1 - 198365852 C
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968458 1 - 192294377 C
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348959 1 - 180432695 c
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625523 1 -  90373283 C
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28044342 1 +  39895921 C
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126 84 +  50472720 I

a score=732170.000000
s hg38.chr21_GL383581v2_alt     27455 308 +    116689 ACATCTC-----------tttttttttttttgagacagggtcttgctctgttgcccaggcgggagtgtcatggtacaa--tctctgctcactgcagcctccatctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagaaacagggttttgctatgttggccagactggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcgggagccactgcgcccggccACGCAG
s panTro4.chr21              19531141 320 +  32799110 ACATCTCttttt-ttttttttttttttttttgagacagggtcttgctctgttgcccaggctggagtgtcatggtacaatctctctgctcactgcagcctccatctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagagacagggttttactatgttggccagactggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaagagctgggattacaggcgtgagccactgcgcctggccACGCAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34427664 315 +  48394510 ACATCTC---tt-ttttttctttttttttttgagacagggtcttgctctgttgaccaggctggagtgtggtggtacaa--tctctgctcactgcagcctccatctcccaggttcaagcgattctcctgcctcagcctcccgagtagctggtattacaagtgttcaccaccatggcctgctaatttttgtatttttggtagaaacggggttttgctatgttggccagactggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgaggcactgcgcccgtccACGCAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19959813 309 +  32716333 ACAtttt----------ttttttttttttttgagacagggtcttgctctgttgcccaggctggagtgtcgtggtacaa--tctctgctcactgcagcctccatctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagagatggggttttgctatgttggccagactggtctcgaactcctgacctaaagtgatccacccacctcagcctcccaaagtgctcggattacaggcgtgagccactgcgcccggccACGTAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185127330 314 - 198365852 Atttctt---ttcttttttttttttttttttgagatagggtcttgctctgttg--caggctggactgttgtggtataa--tctctgctcactgcagcctccgtctcccaggttcaagcgattctgccacctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagagatggagttttgctgtgttggccagactggtctcgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccACGCAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968459 313 - 192294377 Atttctt---tt-ttttttttttttttttttgagatagggtcttgctctgttg--caggctggactgttgtggtataa--tctctgctcactgcagcctccgtctcccaggttcaagcgattctgccgcctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagagatggagttttgctgtgttggccagactggtctcgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccactgcgtctggccACGCAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167348960 316 - 180432695 acctttt---tttttttttttttttttttttgagatagggtcttgctctgttgcccaggctggagcgtcatggtacag--tctctgctcactgcagcctccgtctcccaggttcaagcgattcttctgcctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagagatggagttttgctgtgttggccagactggtctcgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccacgcAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625524 305 -  90373283 ACCtttt---tt---------ttttttttttgagatagggtcttgctctgttgcccaggctggagcgtcgtggt--ag--tctctgctcactgcagcctccgtctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggtattacaagtgctcaccaccatggcctgctaatttttgtatttttggtagagatagggttttgctgtgttggccagactggtctcaaactcctgacctcaagtgatccacctacctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccACGCAG
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28044343   0 +  39895921 C
e calJac3.chr21              37430126  84 +  50472720 I

a score=284634.000000
s hg38.chr21_GL383581v2_alt     27763 105 +    116689 ACATCTTAATGGTGACACATCAGGGCCCCACTGCCCC--TGGCAACCCCTAAGAGTGCAGCTGTGGGCAAAGCCGTGGACACAGAGATTTGGGTTACAAA-TGGTATG
s panTro4.chr21              19531461 104 +  32799110 ACATCTTAATGGTGACACATCAGGGCCCCACTG-CCC--TGGCAACCCCTAAGAGTGCAGCTGTGGGCAAAGCCGTGGACACAGAGATTTGGGTTAAAAA-TGGTATG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34427979 105 +  48394510 ACATCTTAATGGTGACACATCAGGGCCCCACTGCCCC--TGGCAACCCCTAAGAGTGCAGCTGTGGGCAAAGCTGTGGACACAGAGATTTGGGTTAAAAA-TGGTATG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19960122 105 +  32716333 ACATCTTAATGGTGACACACAAGGGCCCCACTGCCCC--TGGCAACCCCTAAGAGTGCAGCTGTGGGCAAAGCCGTGGACACAGAGATTTGGGTTAAAAA-TGGTATG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185127644 104 - 198365852 ACATCTTAATGGTGACACAACAGGGCCCCACTGCCCC---GGCAACCCCTAAGAGTGCAGCAGTGGGCAAAGCCGTGGACACAGAGATTTGTGTTAAAAA-TTGTATG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968772 104 - 192294377 ACATCTTAATGGTGACACAACAGGGCCCCACTGCCCC---GGCAACCCCTAAGAGTGCAGCAGTGGGCAAAGCCGTGGACACAGAGATTTGTGTTAAAAA-TTGTATG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167349276 104 - 180432695 ACATGTTAATGGTGACACAACAGGGCCCCACTGCCCC---GGCAACCCCTAAGAGTGCAGCAGTGGGCAAAGCCGTGGACACAGAGATTTGAGTTAAAAA-TTGTATG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625829 105 -  90373283 ACATCTTAATGGTGACACAACAGGGCCCCACTGCCCC--TGGCAACCCCTAAGAGTGCAGCAGTGGGCAAAGCCGTGGACACAGAGATTTGAGTTAAAAA-TGGTATG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28044343 108 +  39895921 ATGTCTAGTGGGTGACATCTTAGCACTCCACGGCCCCCCTGGTAATGCCTAAGGGTATGGCAGGGGACAAAGCCATGGGCATAGAGAGTTGAGTTAAAAAGTGGTATA
i canFam3.chr31             C 0 I 131
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126  84 +  50472720 I

a score=789968.000000
s hg38.chr21_GL383581v2_alt     27868 307 +    116689 GGGTtgtttgtacacccatgttcatgttgacacgattcacaacagccaaaaggtggaagca--ctccggtgtcgttgaaggattaatagataaatctttaatagatggtctttccatacaatggaatatcattcagccttagaaaggaaggggattgtgacacatcctaccacacacatggaccttgaggacattatgctgagtagagtagggcagtcacaaaa-----ggatactgtctgcttccacttaaatgaggtccccagagtcatcaaatccataaagacag---gaagtagaatggtggttgcggtggtg----
s panTro4.chr21              19531565 307 +  32799110 GGGTtgtttgtacacccatgttcatgttgacacgattcacaacagccaaaagatggaagca--ctccggtgtcgttgaaggattaatagataaatctttaatagatggtctttccatacaatggaatatcattcagccttagaaaggaaggggattgtgacacatcctaccacacagatggaccttgaggacattatgctgagtagagtagggcagtcacaaaa-----ggatactgtctgcttccacttaaatgaggtccccagagtcatcaaatccataaagacag---gaagtagaatggtggttgcggtggtg----
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34428084 304 +  48394510 GGGTtgtttgtacacccatgttcatattgacatgattcacaacagccaaaaggcggaagca--cttcggtgtcgttgaaggattaatagataaatc---agtggatggtctttccatacaatggaatatcattcagccttagaaaggaaggggattgtgacacatcctaccacacggatggaccttgaggacattatgctgagtggagtagggcagtcacaaaa-----ggctactgtctgcttccacttaaatgaggtccccagagtcatcaaatccataaagacag---gaagtagaatggcggttgcggtggag----
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19960227 304 +  32716333 GTGTtgtttgtacacccatgttcatactgacacgattcacaacagccagaaggtggaagca--ctccggtgtcgttgaaggattaatagataaatc---aatggatggtctttccatacaatggaatatcattcagccttagaaaggaaggggattgtgacgtatcctaccacacggatggaccttgaggacattatgctgagtggagtaggatagtcacaaaa-----ggatactgtctgcttccacttaaatgaggtccccagagtcatcaaatccataaagacag---gaagtagaatggtggttgTGGTGGTG----
i nomLeu3.chr25             C 0 M 396
s rheMac3.chr3              185127748 303 - 198365852 GGGTtatttatac-cccatgttcatattgactcgattcacagcagccaaaaggtggaagca--ctctggtgtcgttgaaggatgaatagataaacc---aatggatggtctttccatacgatggaatgtcattcagcattagaaaggaaggggattgtgacacatgccaccacgtggatggaccttgaggacattatgccgagtggagtaggacagtcacgaaa-----ggataccgtatgcttccacttaaatgaggtccccagagtcatcaaatccataaagacgg---gaagtagaatggtggttgcgatagtg----
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178968876 303 - 192294377 GGGTtatttatac-cccatgttcatattgactcgattcacagcagccaaaaggtggaagca--ctctggtgtcgttgaaggatgaatagataaacc---aatggatggtctttccatacgatggaatgtcattcagcattagaaaggaaggggattgtgacacatgccaccacgtggatggaccttgaggacattatgccgagtggagtaggacagtcacgaaa-----ggataccgtatgcttccacttaaatgaggtccccagagtcatcaaatccataaagacgg---gaagtagaatggtggttgcgatagtg----
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167349380 303 - 180432695 GGGTTATTTATAC-CCCATGTTCATATTGACTCGATTCACagcagccaaaaggtggaagca--ctCTGGTGTCGTTGAAGGATGAATAGATAAACC---AATGGATGGTCTTTCCATACGATGGAATGTCATTCAGCATTAGAAAGGAAGGGGATTgtgacacatgccaccatgtggatggaccttgaggacattatgccgAGTGGAGTAGGACAGTCACGAAA-----GGATACTGTATGCTTCCACTTAAATGAGGTCCCCAGAGTCATCAGATCCATaaagacag---gaagtagaatggtggttgtgaTGGTG----
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31625934 299 -  90373283 GGGTtatttatac-cccatgttcatattgactcgattcacagcagccaaaaggtggaagca--ctccggtgtcattgaaggatga----ataaacc---aatggatggtctttccatacgatggaatgtcattcagtattagaaaggaaggggattgtgacacatgccaccacgtggatggaccttgaggacattatgccgagtgcagtaggacagtcacaaaa-----ggatactgtatgcttccacttaaatgaggtccccagagtcatcaaatccataaagacag---gaagtagaatggtggttgcgatggtg----
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28044582 308 +  39895921 GGGTtatttgtacacccgggttcatagcagcattattcacaacagccaaatggtgcaagcgacctaagtttccgtcactggacgaatggataagc----aaaatgttgtctatccatacagtgaaatgttattcagccataaaaaggaaggagtttctgaccca-------acgtgaatggaccttgaggatattatggtagat--attaaaccggtcacaaaaaagagaaatactgtgtgattccacttctataagatacttggaggagtcaaattcatagaggccattcaaagtagagtggcgggtaccagggtctggg
i canFam3.chr31             I 131 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126  84 +  50472720 I

a score=391761.000000
s hg38.chr21_GL383581v2_alt     28175 198 +    116689 gagggaggg--aagtgggaagttcgtgttgaatggggccagagtttcagttctg-gggctgtacagagttctggagatggatggtggtcatgattgcaca---atgtgaatgtgcttggcactaccgaactgtacacctaaaaagagttatgatggtacattttatgttatgtgtattttaccacaattTAA----TTTTTTTTTTTT
s panTro4.chr21              19531872 197 +  32799110 gagggaggg--aagtgggaagttcatgttgaatggggccagagtttcagttctg-gggccgtacagagttctggagatggatggtggtcatgattgcaca---atgtgaatgtgcttggcactaccgaactgtacacctaaaaagagttaggatggtacattttatgttatgtgtattttaccacaattTAA-----TTTTTTTTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34428388 197 +  48394510 gagggaggg--aagtgggaagttcgtgttgaatggggccagagtttcatttctg-gggctgtacggagttctggagatggatggtcgtcatgattgcaca---atgtgaatgtgcttggcactaccaaactgtacacctaaaaagagttatgatggtacgttttatgttatgtgtattttaccacaattTAG-----TTTTTTTTTTC
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185128051 194 - 198365852 gagggagga--aagcgggaagttcgtgttgagtggggccagagtttcagttctg-gagctgtagagagttctcgagatggatggtggtcatgattgcaca---atgtgaatgtgcttggcactaccgaactgtacacctaaaaagagttataatggtacattttatgttatgtgcattttaccacaatttaa-----TTTTTTTT---
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178969179 194 - 192294377 gagggagga--aagcgggaagttcgtgttgagtggggccagagtttcagttctg-gagctgtagagagttctcgagatggatggtggtcatgattgcaca---atgtgaatgtgcttggcactaccgaactgtacacctaaaaagagttataatggtacattttatgttatgtgcattttaccacaattTAA-----TTTTTTTT---
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167349683 195 - 180432695 GAGGGAGGA--AAGTGGGAAGTTCGTGTTGAGTGGGGCCAGAGTTTCAGTTCTG-GAGCTGtagagagttctggagatggatggtggtcaTGACTGCACA---ATGTGAATGTGCTTGGCACTACCGAACTGTACACCTAAAAAGAGTTataatggtacattttatgttatgtgcattttaccacaatttaa----ttttttttt---
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31626233 199 -  90373283 gagggagga--aagcgggaagttcgtgttgagtggggccagagtttcagttctg-gagctgtagagagttctggagatggatggtggtcatgattgcaca---atgtgaatgtgcttggcactaccgaactgtacacctaaaaagagttatgatggtacattttatgttatgtgcattttaccacaattTAATTTTTTTTTTTTT---
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28044890 198 +  39895921 cagggaggaagaagtggggagttagtctttcatggggatgatattttagttttgtaaaataaaaacagttccaga----gatggtggtgagggttgtacagccgtgtgaacgtattttatgctactgagtcgtacacttaaaagcggttaagatgtaac-ttctatgttatgtgtattttcccgcgatttaaaaCACTTTTTT-----
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126  84 +  50472720 I
e nomLeu3.chr25              19960531 396 +  32716333 M

a score=61244.000000
s hg38.chr21_GL383581v2_alt     28373 29 +    116689 AATGGCATGGGGTTGGCT-AAAAAGG-----------TGGC
s panTro4.chr21              19532069 34 +  32799110 AATGGCATGGGGTTGGCT-AAAAAGGTG------GCCTGGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34428585 34 +  48394510 AATGGCATGGGGTTGGCT-AAAAAGGTG------GCCTGGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19960927 34 +  32716333 AATGGCATGGGGTTGGCC-AAAAAGGTG------GCCTGGC
i nomLeu3.chr25             M 396 C 0
s rheMac3.chr3              185128245 27 - 198365852 AATGGCATGGGATTGGCT-AAAAAGGTG-------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178969373 27 - 192294377 AATGGCATGGGATTGGCT-AAAAAGGTG-------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167349878 27 - 180432695 aatggcatggGATTGGCT-AAAAAGGTG-------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31626432 29 -  90373283 AATGGCATGGGATTGGCT-AAAAAGGTGGC-----------
i chlSab2.chr2              C 0 I 66
s canFam3.chr31              28045088 41 +  39895921 AATGGCATGAAGTTGGTGAAAAAAGGTAGCCAGTTCCTGGC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126 84 +  50472720 I

a score=17119.000000
s hg38.chr21_GL383581v2_alt     28402 26 +    116689 CTGGCCTGGAGATTGGCTGCAGTAGA
s panTro4.chr21              19532103 26 +  32799110 CTGGCCTGGCGATTGGCTGCAGTAGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34428619 26 +  48394510 CTGGCCTGGAGATTGGCTGCAGTAGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19960961 26 +  32716333 CTGGCCTGGAGATTGGCTGCAGTAGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185128272  8 - 198365852 ------------------GCAGTAGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178969400  8 - 192294377 ------------------GCAGTAGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167349905  8 - 180432695 ------------------GCAGTAGG
i papAnu2.chr3              C 0 C 0
s canFam3.chr31              28045129 17 +  39895921 CTGGCCAAGAAATTGGC---------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126 84 +  50472720 I
e chlSab2.chr2               31626461 66 -  90373283 I

a score=924635.000000
s hg38.chr21_GL383581v2_alt     28428 376 +    116689 CCCCTCTCCGAGGCAGCAGGTCTCCTCTGCTGTCTGGAGAATGCTCCAGGGAAGTGGCCTGGCTGGAGGACGTGAAGGCGGTGGAGACAGTGATCAGGAGCTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACACCCAGAGCTGTGAGTGCCAGGCCCCGTGTACCCATTGCCCAGTGGGTATT-GCTAATATTTGAAAGGACTTGAGAAAGAACAGTAGCGTGGGTCTTGTGGAAAGTC-TTA-TTTTCCTGCATAACCCCAG-CC-CCCTGAGGCTCTGTGAGGCCATTGGGCCTTCTGAG-GACACGGT-CAGGACATTTTGGGGATCAGAGGCGAGCTGAGAGAAGAACATTTAAAAAG
s panTro4.chr21              19532129 385 +  32799110 CCCCTCTCCGAGGCAGCAGGTCTCCTCTGCTGTCTGGAGAATGCGCCAGGGAAGCGGCCTGGCTG--------GAAGGCGGTGGAGACAGTGATCAGGAGCTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCCTAAGGCAGAGTCAACATAAGGCAGAGTCAACACCCAGAGCTGTGAGTGCCAGGCCCCGTGCAACCATTGCCCAGTGGGTATT-GCTAATATTTGAAAGGACTTGAGAAAGAACAGTAGCGTGGGTCTTGTGGAAAGTC-TTA-TTTTCCTGCATAACCCCAGCCC-CCCTGAGGCTCTGTGAGGCCATTGGGCCTTCTGAG-GACACGGT-CAGGACATTTTGGGGATCAGAGGCGAGCTGAGAGAAGAACATTTAAAAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34428645 376 +  48394510 CCCCTCTCCGAGGCAGCAGGTCTCCTCTGCCGTCTGGAGAATGCGCCAGGGAAGCAGCCTGGCTGGAGGACGTGAAGGTGGTGGAGACGGTGATCAGGAGCTTGAGCTTTGGGGCTCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACACCCAGAGCTGTGAGTGCCAGGCCCTGTGCACCCATTGCCCAGTAGGTATT-GCTAATATTTGAAAGGACTTGAGAAAGAACAGTAGCATGGGTCTTGTGGAAAGTC-TTA-TTTTCCTGCATAACCCCAG-CC-CCTTGAGGCTTTGTGAGGCCATTGGGCCTTCTGAG-GACACGGT-CAGGACATTTTGGGGATCAGAGGTGAGCTGAGAGAAGAACATTTAAAAAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19960987 377 +  32716333 CCCCTCTCTGAGGCAGCAGGTCTCCTCTGCTGTCTGGAGAATACGCCAGGGAAGCGACCTGGCTGGAGGACGTGAAGGCGGTGGAGACAGTGATCAGGAGCTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACACCCAGAGCTGTGAGTGCCAGGCCCCGCGCACCCATTGCCCAGTGGGTATT-GCTAATATTTGAAAAGACTTGAGAAAGAACAGCAGCTTGGGTCTTGTGGAAAGTCTTTA-TTTTCCTGCATAACCCCAG-CC-CCCTGAGGCTCTGTGAGGCCATTGGGCCTTCTGAG-GACACGGT-CAGGACATTTTGGGGATCAGAGGTGAGCTGAGAGAAGAACATTTAAAAAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185128280 373 - 198365852 --CCCCTCTCAG---GCAGATCTCCTCTGCTCTCTGGAGAATGCGCCAGGGAAGTGGCCTGGCTGGAGGATGTGAAGGCGGTGGAGAGGGTGATCAGGAGCTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACCCCCAGAGCTGTGAGTGCCAGGCCCTATGCG-CCACTGCCCAGTGAGTATTGGCTAGTGTTTGGAAGGACTTGAGAAAGAACAGCAGTGTGCGTCTTGTGGAAAGTC-TTATTTTTCCTGCATAGCCCCAG-CC-CCCTGAGGCTCTGTGAGACCACTGGGCCTTCTGAGGGACATGGT-CAGGACATTTTGGATATGAGAGGCGAGCTGAAAAAAGAACATTTAAAAAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178969408 373 - 192294377 --CCCCTCTCAG---GCAGATCTCCTCTGCTCTCTGGAGAATGCGCCAGGGAAGTGGCCTGGCTGGAGGATGTGAAGGCGGTGGAGAGGGTGATCAGGAGCTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACCCCCAGAGCTGTGAGTGCCAGGCCCTATGCG-CCACTGCCCAGTGAGTATTGGCTAGTGTTTGGAAGGACTTGAGAAAGAACAGCAGTGTGCGTCTTGTGGAAAGTC-TTATTTTTCCTGCATAGCCCCAG-CC-CCCTGAGGCTCTGTGAGACCACTGGGCCTTCTGAGGGACATGGT-CAGGACATTTTGGATATGAGAGGCGAGCTGAAAAAAGAACATTTAAAAAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167349913 374 - 180432695 --CCCCTCTCAGGCAGCAGATCTCCTCTGCTCTCTGGAGAATGCGCCAGGGAAGTGGCCTGGCTGGAGGATGTGAAGGCGGTGGAGAGGGTGATCAGGAACTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACCCCCAGAGCTGtgagtgccaggccctgtgcg-CCACTGCCCAGTGAGTATT-GCTAGTGTTTGTAAGGACTTGAGAAAGAACAGCAGCGTGCGTCTTGTGGAAAGTC-TTA-TTTTCCTGCATAGCCCCAG-CC-CCCTGAGGCTCTGTGAGACCACTGGGCCTTCTGAGGGACATGGT-CAGGACATTTTGGGTATGAGAGGCGAGctgaaaaaagaacatttaaaaag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31626527 373 -  90373283 TCCCTCTCTGAGGCAGCAGAT---CTCTGCTCTCTGGAGAATGCGCCAGGGAAGTGGCCTGGCTGGAGGATGTGAAGGCGGTGGAGAGGGTGATCAGGAGCTTGAGCTTTGGGGCCCACA-GGGTGCTTAGGAGGGCCC----------------TAAGGCAGAGTCAACCCCCAGAGCTGTGAGTGCCAGGCCCCGTGTG-CCACTGCCCAGTGAGTATT-GCTAGTGTTTGGAAGGACTTGAGAAAGAACAGCAGCGTGCATCTTGTGGAAAGTC-TTA-TTTTCCTGCATAGCCCCAG-CC-CTCTGAGGCTCTGAGAGACCATTGGGCCTTCTGAGAGACACAGT-CAGGACATTTTGGGTATGAGAGGCGAGCTGAAAAAAGAACATTTAAAAAG
i chlSab2.chr2              I 66 C 0
s canFam3.chr31              28045146 354 +  39895921 ---------------ACATGAGCCCCATGCCTTTAGGAGAAAGCCCCCAGGGAG---CCTGGC-AGAGGATAGGGAGGTGGCAAAGACAGGGGTCTAGAGCATGGGCTGTGGGTCAGATGTGTGCACTTAGAAGGATTC----------------TAGGGCAAATGCA---CCCAGGGCTGTGAGTACAGAGCCTTGCACGCCGAGAGCTCCCTGGATGTT-ACTGGTATTTTGAAAGACCTGAGGAAGGAGGGTGGACGGGGTCTCGTGGGACAGT-GGA--TTTCCTGCACAGCCCCAC-CCGCCCCGAGGCTCT--GAGGTGGCCTGGCCCTCCGAG-GACACCATGGGGGACACGCTTAGGGTCAGAAGTGAGCCAACAGAAGATCATTTAAAAGG
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126  84 +  50472720 I

a score=716697.000000
s hg38.chr21_GL383581v2_alt     28804 313 +    116689 CATTTGCAgccgggcgcagtgacccacacctgtaatcccaggacttggggaggccagggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagccgggcgtggtggtgggcgcctgtaatcccagctacatgagaggctgaggcaggagaattgcttgaacccaggaggtggaagttacagtaagccaatatcgcaccatagcactttagcttgggtggcagagcaagactccatctcaaa-----aaaataaaataaataaaaaGC
s panTro4.chr21              19532514 308 +  32799110 CATTTGCAgccgggcgcagtgacccacacctgtaatcccagcacttggggaggccagggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagccgggcatggtagtgggcgcctgtaatcccagctacatgagaggctgaggcaggagaattgcttgaacccaggaggtggaagttacagtaagccaagatcgcaccatagcactttagcttgggtggcagagcaagactccatctcaaa----------aaaataaataaaaaGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34429021 308 +  48394510 CATTTGCagccggccacagtgacccacacatgtaaccccagcacttggggaggccaggatgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagccgggcgtggtggtgggcgcctgtaatcccagctacatgagaggctgaggcagaagaattgcttgaacccaggaggtggaagttacagtgagccaagatcgcaccatagcactttagcttgggtggcagagcaagactccatcgcaaa----------aaaataaataaaaaGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19961364 318 +  32716333 CATTTGCAgccgggcgcagtgacccacacctgtaatcccagcacttggggaggccaaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtgatgggcacctgtaatcccagctacatgcgaggctgaagccggagaattgcttgaacctaggaggtggaagttacagtgagccaagatcgcaccatagcactttagcctgggtggcagagcaagactccatctcaaaaaaataaaataaattaaataaaaaGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185128653 317 - 198365852 CATTTGCAgccaggcgtagtgaaccacacctgtaatcccagcactttgggaggccaagacaggaggatcacctgaggtcaggagctggagaccagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggagaatcacttgaa-ccaggaggtggaagttacagtgagccaagatcacaccacagcactttagcctgggtgacagagcaaaacttcatctcaaaaaataaaaatatattaaataaaaaGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178969781 317 - 192294377 CATTTGCAgccaggcgtagtgaaccacacctgtaatcccagcactttgggaggccaagacaggaggatcacctgaggtcaggagctggagaccagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggagaatcacttgaa-ccaggaggtggaagttacagtgagccaagatcacaccacagcactttagcctgggtgacagagcaaaacttcatctcaaaaaataaaaaTATATTAAATAAAAAGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167350287 317 - 180432695 catttgcaGCCAGGCGTAGTGaaccacacctgtaatcccagcactttgggaggccaagacaggaggatcacctgaggtcaggagctggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatgatggtgggtgcctataatcccagctactcaggaggctgaggcaggagaatcacttgaa-ccaggaggtggaagttacagtgagccaagatcacaccacagcactttagcctgggcgacagagcaaaacttcatctcaaaaaataaaaataaattaaataaaaagc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31626900 318 -  90373283 CATTTGCAgccaggcgtagtgacccacacctgtaatcccagcactttgggaggccaagacaggaggatcacctgaggtcaggagctggagaccagcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagccgggcatgatgatgggtgcctataatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggtgaaagttacagtgagccaagaccacaccacagcactttagcctgggcgacagagcaaaacttcatctcaaaaaataaaaataaattaaataaaaaGC
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28045500   0 +  39895921 C
e calJac3.chr21              37430126  84 +  50472720 I

a score=409261.000000
s hg38.chr21_GL383581v2_alt     29117 150 +    116689 ATTTGCTTCTGGAGGCTTCACATTATTCTTGG--GTAAACCTAGAGTAAAGGTGTTGGAAGCAGAATGTTACTCAGTTACATGTGGGATGAACAGAGGTTAGATAAGGTCCAAGTCTGCAGAAACATAGCAGCACTTTCAGAAAGAACCCTA
s panTro4.chr21              19532822 150 +  32799110 ATTTGCTTCTGGAGGCTTCACATTATTCTTGG--GTAAACCTAGAGTAAAGGTGTTGGAAACAGAATGTTACTCAGTTACATGTGGGATGAACAGAGGTTAGATAAGGTCCAAGTCTGCAGAAACATAGCGGCACTTTCAGAAAGAACCCTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34429329 150 +  48394510 ATTTGCCTCTGGAGGCTTCACATTATTCTTGG--GTAAACCCAGAGTAAAGGTGTTGGAAACAGAATGTTACTCGGTTACATATGGGATGAACAGATGTTAGATAAGGTCAAAGTCTGCAGACACATAGCGGCACTTTCAGAAAGAACCCTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19961682 150 +  32716333 ATTTGCTTCTGGAGGCTTCACATTACTCTTGG--GTAAACCCAGAGTAAAGGTGTTGGAAACAGAATGTTACTCGGTTACATGTGGGATGAACAGATGTTAGATAAGGTCCAAGTCTGCAGAAACATAGTGGCACTTTCAGAAAGAACCCCA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185128970 149 - 198365852 ATTTGCTTCTGGAGGCTTCACATTATTCTTGG--GTAAACCCAGAGTAAAGGTGTTGGAAACAGAATGTTACTCAGTTACATGAGGG-TGAACAGATGTTAGATAAGGTCCAAGTCTACAGAAACACAGCGGCACTTTCAGAGAGAACCCTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178970098 149 - 192294377 ATTTGCTTCTGGAGGCTTCACATTATTCTTGG--GTAAACCCAGAGTAAAGGTGTTGGAAACAGAATGTTACTCAGTTACATGAGGG-TGAACAGATGTTAGATAAGGTCCAAGTCTACAGAAACACAGCGGCACTTTCAGAGAGAACCCTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167350604 149 - 180432695 atttgctTCTGGAGGCTTCACATTATTCTTGG--GTAAACCCAGAGTAAAGGTGTTGGAAACAGAATGTTACTCAGTTACATGAGGG-TGAACAGATGTTAGATAAGGTCCAAGTCTACAGAAACACAGCGGCACTTTCAGAAAGAACCCTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31627218 149 -  90373283 ATTTGCTTCTGGAGGCTTCACATTATTCTTGG--GTAAACCCAGAGTAAAGGTGTTAGAAACAGAATGTTACTCAGTTACATGCGGG-TGAACAAATGTTAGATAAGGTCCAAGTCTACAGAAACACAGCGGCACTTTCAGAAAGAACCCTA
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28045500 143 +  39895921 ATTTGCTTCTGGAAATT---------TATTGGCAGCAAAATCGGGGCAAAGGTACTGGAAACAGAATCGCACTCTGTTACACCTCGACAGAGTAGGCGTTAGATAAAGTCCAAGTTTGCGGAGAAAGAGCAGTGCTTCCAGAAAGAGCTATA
i canFam3.chr31             C 0 I 2185
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126  84 +  50472720 I

a score=86485.000000
s hg38.chr21_GL383581v2_alt     29267 38 +    116689 GTCACTTGTTCCTTCATCTGCCATGATGTATTGTAGGT
s panTro4.chr21              19532972 38 +  32799110 GTCACTTGTTCCTTCATCTGCCATGATGTATTGTAGGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34429479 38 +  48394510 GTCACTTGTTCCTTCATCTGCCATGATGTATCGTAGCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19961832 38 +  32716333 GTCACTTGTTCCTTCATCTGCCATGATGTATTGTAGGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185129119 38 - 198365852 GTCACTTGTTCCTTCATCTGTCATGATGTATTTTAGGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178970247 38 - 192294377 GTCACTTGTTCCTTCATCTGTCATGATGTATTTTAGGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167350753 38 - 180432695 GTCACTTGTTCCTTCATCTGTCATGATGTATTTTAGGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31627367 34 -  90373283 GTCACTTG----TTCATCTGTCATGATGTATTTTAGGT
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28045643 2185 +  39895921 I
e calJac3.chr21              37430126 84 +  50472720 I

a score=2129396.000000
s hg38.chr21_GL383581v2_alt     29305 841 +    116689  
s panTro4.chr21              19533010 846 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34429517 865 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19961870 841 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185129157 852 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178970285 852 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167350791 856 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31627401 878 -  90373283  
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28047828 762 +  39895921  
i canFam3.chr31             I 2185 I 291
e mm10.chr16                 91561788 1063 +  98207768 I
e calJac3.chr21              37430126  84 +  50472720 I

a score=620254.000000
s hg38.chr21_GL383581v2_alt     30146 311 +    116689 AAGGAGTATTCAACTATTAGAAGTTGTTggctgggtgaggtggctcatgcctgtaatcccagcactttgagaggccgaggtgggtggatcatgaagtcaggagatcgagaccatcctggccaacagggtgaa--accctgtctctactaaaaatacaaaaattacccaggcatggtggcatgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggctgcagtgagctgagatccacgccactgcactccagcct-ggcaacagagcaagactccgtctc-------------aaa
s panTro4.chr21              19533856 287 +  32799110 AAGGAGTGTTCAACTATTAGAAGTTGTTggctgggtgcggtggctcatgcctgtaatcccagcactttgagaggccgaggtgggtggatcatgaagtcaggagatcgagaccatcctggccaacagggtgaa--accctgtctctactaaaaatacaaaaattacccaggcatggtggcatgcgcctgtagtcccagctactcgggaggctgaggcagaagaatcgcttgaacccaggaggcggaagttgcagtgagccgagat-cgcgccactgcactccagcct-gg-------gc-----------------------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34430382 310 +  48394510 AAGGAGTATTCAACTATTAGAAGTTGTTggctgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaggtgtagagatcgagaccatcctggccaacatggtgaa--accctttctctactaaaaatacaaaaactacccaggcatggtggcatgcgcctgtagtcccagctactcgggaggctgaggcaggacaatcgcttgaacccaggaggcggaggctgcagtgagctgagat-catgccactgcactccagcct-ggcaacagaacaagactccgtctc-------------aag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19962711 310 +  32716333 AAGGAGTATTCAACTATTAGAAGTTGTTggccgggcgtggtggctcatgcctgtaatccaagcactttgggaggctgaggtgggtggatcatgaggtcaggagatcaagaccatcctggccaacatggtgaa--accctgtctctactaaaaatacaaaagttacccaggcatggtggcatgcgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagat-cacgccactgcactccagcct-ggcaacagagcaagactctgtctc-------------aag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130009 284 - 198365852 AAGGAGTATTCAACTATTAGAAGTTGTTggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgacgcgcgtggatcacgaggtca---------------ccgggccaacatggtgaaacaccctgtctctactaaaaatacaaaacttaccca--------ggcgtgcacctgtagtcccagctactcgggaggcggaggcaggagaatcgcttgaaccagggattcggaggttgcagtgagccgagat-cac------gcactccagcctgggcgacagagcaagactccatctc-------------aaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178971137 289 - 192294377 AAGGAGTATTCAACTATTAGAAGTTGTTggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgacgcgcgtggatcacgaggtca---------------ccgggccaacatggtgaa--accctgtctctactaaaaatacaaaacttaccca--------ggcgtgcacctgtagtcccagctactcgggaggcggaggcaggagaatcgcttgaaccagggattcggaggttgcagtgagccgagat-cacgccactgcactccagcct-ggcgacagagcaagactccatctc-----------aaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167351647 300 - 180432695 AAGGAGTATTCAACTATTAGaagttgttggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgacgtgcgtggatcacgaggtca---------------ccgggccaacatggtgaa--accctgtctctactaaaaatacaaaacttaccca--------ggcgtgcacctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaaccagggattcggaggttgcagtgagccgagat-cacgccactgcactccagcct-ggcaacagagcaagactccatctcaaaaaaaaaaaaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31628279 284 -  90373283 AAGGAGTATTCAACTATTAGAAGTTGTTggccgggcacggtggctcatgcctgcagtcccagcactttgggaggccgacgtgcgtggatcacgaagtca---------------cctggccaacatggtgaa--acactgtctctactaaaaatacaaaacttaccca--------ggcatgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaaccagggatttggaggttgcagtgagccaagat-cacgccactgcactccagcct-ggcgacagagcaagactccatctc----------------
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e calJac3.chr21              37430126  84 +  50472720 I

a score=369571.000000
s hg38.chr21_GL383581v2_alt     30457 152 +    116689 aaaaaaaaaaaaaaaaaaaaaattagccagccgtggtggtgcacgcctgcaatcctagctacttggttgggaagctgaggcaggagaattgcttgaacccaggaggcggaagttgcagtgagccgagatcgcgccactgcactccagcctgg
s panTro4.chr21              19534143 130 +  32799110 ------------------aaaattagccgggcgtggtagcgggcgcctgtagtcccagctac----tcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgaaatcgcgccactgcactccagcctgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34430692 142 +  48394510 aaaaaaaaaaaa------aaaaatagccagccctggtggtgcatgcctgcaatcctagctac----ttgggaggctgaggcaggagaattgcttgaacccaggaggcggaaattgcagtgagccaagatcgtgccactgcactctagcctgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963021 138 +  32716333 aaaaaaaa----------aaaattagtcagccgtggtggtacatgcctgcaatcctagctac----ttgggaggctgaggcaggagaattgcttgaacccgggaggcggaagttgcagtgagccgagatcacgccactgcactccagcctgg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130293 141 - 198365852 aaaaaaaaaaaa------aaaattagctggccgtagtggtgcatgcctgcaatcctagctac----ttgggaggctgaggcaggag-attgcttgaacctgggaggcagaagttgcagtgagctgagattgcgccactgcactccagcctgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178971426 141 - 192294377 aaaaaaaaaaaa------aaaattagctggccgtagtggtgcatgcctgcaatcctagctac----ttgggaggctgaggcaggag-attgcttgaacctgggaggcagaagttgcagtgagctgagattgcgccactgcactccagcctgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167351947 141 - 180432695 aaaaaaaaaaaa------aaaaatagctggccgtagtggtgcatgcctgcaatcctagctac----ttgggaggctgaggcaggag-attgcttgaacctgggaggcagaagttgcagtgagctgagatcgagccactgtactccagcctgg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31628563 138 -  90373283 ----aaaaaaaa------aaaaTTAgctggtcgtagtggtgcatgcctacaatcctagctac----ttgggaggctgaggcaggagaatcgcttgaaccagggatttggaggttgcagtgagccaagatcacgccactgcactccagcctgg
i chlSab2.chr2              C 0 I 291
s calJac3.chr21              37430210 148 +  50472720 AAAAAAAAAGaaaacacaaaaattagctgggcgtggtggtgcacgcctgtaatcccagctac----tcaggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagctgagatctcatcactgcactccatcctgg
i calJac3.chr21             I 84 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I

a score=2800.000000
s hg38.chr21_GL383581v2_alt     30609 1 +    116689 g
s panTro4.chr21              19534273 1 +  32799110 g
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34430834 1 +  48394510 g
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963159 1 +  32716333 g
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130434 1 - 198365852 g
i rheMac3.chr3              C 0 I 5
s macFas5.chr3              178971567 1 - 192294377 g
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352088 1 - 180432695 g
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37430358 1 +  50472720 g
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e chlSab2.chr2               31628701 291 -  90373283 I

a score=-1823.000000
s hg38.chr21_GL383581v2_alt     30610  7 +    116689 cg------------------------------------aaaaa
s panTro4.chr21              19534274 43 +  32799110 cgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34430835  7 +  48394510 cg------------------------------------ataga
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963160  7 +  32716333 cg------------------------------------aaaga
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178971568  7 - 192294377 tg------------------------------------acaga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352089  7 - 180432695 tg------------------------------------aaaga
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37430359  7 +  50472720 ca------------------------------------gcaga
i calJac3.chr21             C 0 I 2
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e rheMac3.chr3              185130435  5 - 198365852 I
e chlSab2.chr2               31628701 291 -  90373283 I

a score=187381.000000
s hg38.chr21_GL383581v2_alt     30617 268 +    116689 gagact--gactc---aacaaca--ataaaaaaTTGTT---------------------------------------------------------------------gccgggtgcagtggctcacacctgcaatcccagcactttgg------gaggccgaggcgggcggatcacctgaggtcaggagttcgaga-cagcctgaccaacatgg-gaaaccccgtctctacttaaaata--caaaattagcagggtgtggtggtgcatgcctgt-aatcccagctacttgggaggct--------------------------gaggcagaggttgcagtgagatgagatcgtgtcattgcactccagcctgggcaacaac
s panTro4.chr21              19534317 270 +  32799110 aaGACT--GACTC---AACAACA--ATAAAAAATTGTT---------------------------------------------------------------------gccgggtgcagtggctcacacctgtaatcccagcactttgg------gaggccgaggcaggcggatcacctgaggtcaggagttcgaga-cagcctgaccaacatggagaaaccccgtctctacttaaaata--caaaattagcagggtgtggtggtgcatgcctgtaaatcccagctacttgggaggct--------------------------gagtcagaggttgcagtgagacgagatcgtgtcactgcactccagcctgggcaacaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34430842 304 +  48394510 gagact--gactcaaaaacaaca--ataaaaaaTTGTT---------------------------------------------------------------------gccgggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggccgaggcaggtggatcacctgaggtcgggagtttgaga-cagcctgaccaacatggagaaaccccgtctctactaaaaata--caaaattagcagggtgtagtggtgcatgcctgt-aatcccagctacttgggaggctaaggcagaggaatcacttgaacctgggaggcagaggttgcagtgagatgagatcgtgtcattgcactccagcctgggcaacaac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963167 297 +  32716333 gagact--gactc---AACAATGACACAAAAAATTGTT---------------------------------------------------------------------gctgggtgcagtggctcacacctgtaatcccagcactttgg------gaggctgaggcgggcggatcacctgaggtcgggagttcgaga-cagcctgaccaacatggagaaaccccgtctctactaaaaata--caaaattagcagggtggggtgatgcatgcctgt-aatcccagctacttgggaggctgaggcagaggaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgtcattgcactccagcctgggcaagaac
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37430368 366 +  50472720 aagactcggtctc---aaaaaga--aaaaaaagaaGTTATGTCATTGGTGGACAGAATCAATTTATACCTGAATAAAATACAACTATACCAATTAAAACTAAAGTAggctggacgtggtagctcacacctataatcccagcactttgg------ggggctgaggtgggcagatcatttgaggtcaggagttcaagagcagcttggccaacttggtgaaaccttgtctctactaaaaataacaaaaattagccggct-tggtgatgcctgcctgc-agtcctagctactcaggaggctgaggcaggagaatcgcttaaacctgggaggcagaggttgtaatgagccaagatcgcgccactgcaccccagcctgggcaaaa--
i calJac3.chr21             I 2 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e rheMac3.chr3              185130435   5 - 198365852 I
e chlSab2.chr2               31628701 291 -  90373283 I
e papAnu2.chr3              167352096   0 - 180432695 C
e macFas5.chr3              178971575   0 - 192294377 C

a score=805.000000
s hg38.chr21_GL383581v2_alt     30885 2 +    116689 gt
s panTro4.chr21              19534587 2 +  32799110 gt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431146 2 +  48394510 gc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963464 2 +  32716333 gt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130440 2 - 198365852 ga
i rheMac3.chr3              I 5 C 0
s calJac3.chr21              37430734 2 +  50472720 ga
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e chlSab2.chr2               31628701 291 -  90373283 I
e papAnu2.chr3              167352096 0 - 180432695 C
e macFas5.chr3              178971575 0 - 192294377 C

a score=20280.000000
s hg38.chr21_GL383581v2_alt     30887 16 +    116689 gaaactccgtctc------aaa
s panTro4.chr21              19534589 19 +  32799110 gaaactccgtctc---aaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431148 21 +  48394510 gaaactccgtctc-aaaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963466 18 +  32716333 gaaattccgtctc----aaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130442 21 - 198365852 gatactctgactc-aaaaaaaa
i rheMac3.chr3              C 0 I 3
s macFas5.chr3              178971575 21 - 192294377 gatactctgactc-aaaaaaaa
i macFas5.chr3              C 0 I 3
s papAnu2.chr3              167352096 22 - 180432695 gatactctgactcaaaaaaaaa
i papAnu2.chr3              C 0 I 3
s calJac3.chr21              37430736 16 +  50472720 gaggctctgactc-caa-----
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e chlSab2.chr2               31628701 291 -  90373283 I

a score=185917.000000
s hg38.chr21_GL383581v2_alt     30903 64 +    116689 aaaaaaaaaTTGTTTCATTGTTGAATAAAAAGAAAAATAAGTTATGTCATTGGTGGACAGAATC
s panTro4.chr21              19534608 64 +  32799110 aaaaaaaaaTTGTTTCATTGTTGAATAAAAAGAAAAAGAAGTTATGTCATTGGTGGACAGAATC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431169 64 +  48394510 aaaaaaaaaTTGTTTCATTGTTGAAAAAAAAGAAAAAGAAGTTATGTCATTGGTGGACAGAATC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963484 58 +  32716333 aaaaaaaaaTTGTTTCATTGTTGAAAAAAAAA------AAGTTATGTCATTGGTGGACAGAATC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130466 64 - 198365852 gaaaaaaaaTTGTTTCATTGTTGAAAAAAAAGAAAAAGAAGTTATGTCATTGGTGGACAGAATC
i rheMac3.chr3              I 3 C 0
s macFas5.chr3              178971599 64 - 192294377 gaaaaaaaaTTGTTTCATTGTTGAAAAAAAAGAAAAAGAAGTTATGTCATTGGTGGACAGAATC
i macFas5.chr3              I 3 C 0
s papAnu2.chr3              167352121 64 - 180432695 gaaaaaaaattgtttcattgttgaaaaaaaagaaaaagaagttatgtCATTGGTGGACAGAATC
i papAnu2.chr3              I 3 C 0
s chlSab2.chr2               31628992 64 -  90373283 aaaaaaaaaTTGTTTCATTGTTGAAAAAAAAGAAAAAGAAGTTATGTCATTGGTGGACAGAATC
i chlSab2.chr2              I 291 C 0
s calJac3.chr21              37430752 62 +  50472720 -aaaaaaaTGTGTTTCGTTGTTGAA-GAAAAGAAAGAGAAGTTATGTCCTTGGTGGACAGAATC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I

a score=570901.000000
s hg38.chr21_GL383581v2_alt     30967 260 +    116689 AACTTATATCTGAATAAAAT---AACTATACCaattaaaactaaagtaggccaggcgtagtggctcacgcctataatcccagcactttgggaggccaaggtgggtggatcatttgcgatcaggagtt-tgagaccagcgtggccaacatagtgaaaccctgtctctactaaaaatac--aaaattagccaggcaaggtggtgggcacctgtagtcccagctacttggaggattgaggcaggagaatcgcttgaacctgggaagcag
s panTro4.chr21              19534672 260 +  32799110 AACTTATATCTGAATAAAAT---AACTATACCAATTAAAACTAAAGTAggccaggcgtagtggctcacgcctataatcccagcactttgggaggccgaggtgggtggatcatttgcgatcaggagtt-tgagaccagcctggccaacatagtgaaaccctgtctctactaaaaatac--aaaattagccgggcgaggtggtgggcacctgtagtcccagctacttggagggttgaggcaggagaatcgcttgaacctgggaagcag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431233 263 +  48394510 AACTTATATCTGAATAAAATAACAACTATACCAATTAAAACTAAAGTAggccaggcgtagtggctcacgcctataatcccagcactttgggaggccgaggtacgtggatcatttgcggtcaggagtt-tgagaccagcctggccaacatagtgaaaccctgtctctactaaaaatac--aaaattagccgggcgaggtgatgggcacctgtagtcccagctacttggagggttgaggcaggagaatcgcttgaacccgggaagcag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963542 263 +  32716333 AACTTATATCTGAATAAAATAACAACTATACCAATTAAAACTACAGTAggccaggcgtagtggctcacgcctgtaatctcagcactttgggaggctgagatgggtggatcatttgcggtcaggagtt-tgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatac--aaaattagccgggcgaggtggtgggcacctgtagtcccagctactcagagggttgaggcaggagaatcgcttgaacccgggaagcag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130530 265 - 198365852 AACTTATACCTTAATAAAATAACAACTATACCAATTAAAACTAAAGTAggccaggtgcagctgctcacacttacaatcccagtactttgggaggccaaggtggctgggtcatttgcagtgaggagtt-tgagaccagcctggccaacatggtgagaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgcgcgcctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacccaggaggcgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178971663 265 - 192294377 AACTTATACCTTAATAAAATAACAACTATACCAATTAAAACTAAAGTAggccaggtgcagctgctcacacttacaatcccagtactttgggaggccaaggtggctgggtcatttgcagtgaggagtt-tgagaccagcctggccaacatggtgagaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgcgcgcctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacccaggaggcgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352185 265 - 180432695 AACTTATACCTTAATAAAATAACAACTATACCAATTAAAACtaaagtaggccaggtgcagctGCTAACACTTacagtcccagtactttggaaggccaaggtggctgggtcatttgcagtcaggagtt-tgagaccagcctggccaacatggtaagaccctgtctctactaaaaatacagaaaattagccaggcgtggtggcgcgcgcctgtagtcccagctgctcaggaggctgaggcaggagaatcacttgaacccaggaggcgg
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37430814 265 +  50472720 AACTTATACCTAAATAAAATAACAACTATACCAACTAAAACTACAGTAggccaggcg-agtggctcacacctataatcccagcactttaggaggctgaggtgggcggttcatttgaggtcaggagttaagagaccagcctgaccaacatggtgaaaccccatctctactaaaagtacaaaaaattagccaggcatgatggcacgtgcctgtggtcccggatacttgggaggctgaggcaggagaatcgcttgaacccaggaggcag
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e chlSab2.chr2               31629056   0 -  90373283 C

a score=209265.000000
s hg38.chr21_GL383581v2_alt     31227 72 +    116689 aggttgcagtgagctgagatcacaccactatactccagcctaggca--agagtaagactccatctcaaaaaaaa
s panTro4.chr21              19534932 72 +  32799110 aggttgcagtgagctgagatcacaccactacactccagcctaggcg--agagtgagactccatctcaaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431496 74 +  48394510 aggttgcagtgagctgagatcacaccactgcactccagcctaggcgacagagtgagactccatctcaaaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963805 74 +  32716333 aggttgcagtgagctgggatcacaccactgcactccagcctaggcgacaaagtgagactccatctcaaaaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130795 74 - 198365852 aggttgcagtgagccgacatcacaccactgcactctagcctaggtgacagagtgagactccgtctcaaacaaaa
i rheMac3.chr3              C 0 I 23
s macFas5.chr3              178971928 74 - 192294377 aggttgcagtgagccgacatcacaccactgcactctagcctaggtgacagagtgagactccgtctcaaacaaaa
i macFas5.chr3              C 0 I 7
s papAnu2.chr3              167352450 74 - 180432695 aggttgcagtgagccgagatcacaccactgcactctagcctaggtgacagagtgagactccgtctcaaacaaaa
i papAnu2.chr3              C 0 I 7
s chlSab2.chr2               31629056 74 -  90373283 aggttgcagtgagccaagatcacaccactgtactctagcctaggtgtcagagtgagactccgtctcaaacaaaa
i chlSab2.chr2              C 0 I 9
s calJac3.chr21              37431079 74 +  50472720 aggtttcagtgagccaagatcacaccactatactccagcctgggtggcagagtgaaactccctctcaaaaaaga
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I

a score=-2976.000000
s hg38.chr21_GL383581v2_alt     31299 28 +    116689 aataaaaataaaaataaaataaaaacaa--
s panTro4.chr21              19535004 11 +  32799110 aaaagaatt-----------------aa--
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431570 14 +  48394510 ---agaatt-----------aaaaacaa--
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963879 10 +  32716333 aaaaaaaa------------------aa--
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178972009 16 - 192294377 aaaagcac------------aacaaaaa--
i macFas5.chr3              I 7 C 0
s papAnu2.chr3              167352531 16 - 180432695 aaaagcac------------aacaacaa--
i papAnu2.chr3              I 7 C 0
s chlSab2.chr2               31629139 16 -  90373283 aaaaacac------------aacaacaa--
i chlSab2.chr2              I 9 C 0
s calJac3.chr21              37431153 16 +  50472720 --aaacaa------------aaaaaaaaCC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I
e rheMac3.chr3              185130869 23 - 198365852 I

a score=24624.000000
s hg38.chr21_GL383581v2_alt     31327 10 +    116689 aaactaaagt
s panTro4.chr21              19535015 10 +  32799110 aaaCTAAAGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431584 10 +  48394510 aaaCTAAAGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963889 10 +  32716333 aaaCTAAAGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130892 10 - 198365852 aaaCTAAAGT
i rheMac3.chr3              I 23 C 0
s macFas5.chr3              178972025 10 - 192294377 aaaCTAAAGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352547 10 - 180432695 aaactaaagt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629155 10 -  90373283 aaaCTAAAGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37431169  6 +  50472720 ---CTTAAG-
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91561788 1063 +  98207768 I
e canFam3.chr31              28048590 291 +  39895921 I

a score=135731.000000
s hg38.chr21_GL383581v2_alt     31337 43 +    116689 taaaaGGTCTGGTATA-------CTGAACTGGT-AAACTAATTACAATTTT
s panTro4.chr21              19535025 43 +  32799110 TAAAAGGTCTGGTTTA-------CTGAACTGGT-AAACTAATTACAATTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431594 43 +  48394510 TAAAAGGTCTGGTATA-------TTGAACTGGT-AAACTAATTACAATTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963899 43 +  32716333 TAAAAGGTCTGGTATA-------TTGAACTGGT-AAACTAATTACAATTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130902 43 - 198365852 TCAGAGGTCTGGTGTA-------TTGAACTGGT-AAACTCATTACAATTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972035 43 - 192294377 TCAGAGGTCTGGTGTA-------TTGAACTGGT-AAACTCATTACAATTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352557 43 - 180432695 tCAGAGGTCTGGTGTA-------TTGAACTGGT-AAACTCATTACAATTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629165 43 -  90373283 TCAGAGGTCTGGTGTA-------TTGAACTGGT-AAACTCATTACAATTTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37431175 50 +  50472720 TAAAAGGTCTGGTATAGTGAACTGTGAACTGGT-AAGCTAATCATAATTTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28048881 44 +  39895921 TGGAAGGTCTGCTCTT-------TTGAACTGATAAAACTAATAACAATGTT
i canFam3.chr31             I 291 C 0
e mm10.chr16                 91561788 1063 +  98207768 I

a score=220496.000000
s hg38.chr21_GL383581v2_alt     31380 54 +    116689 GCTTTCCAACCTCCTCAAGTATTTAAAAGACCCAACTCAGCCCATCTTAGAGGC
s panTro4.chr21              19535068 54 +  32799110 GCTTTCCAACCTCCTCAAGTATTTAAAGGACCCAACTCAGCCCATCTTAGAGGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431637 54 +  48394510 GCTTTCCAACCTCCTCCAGTATTTAAAGGACCCAACTCAGCCCATCTTAGAGGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963942 54 +  32716333 GCTTTCCAACCTCCTCAAGTATTTAAAGGACCCAACTCAGCCCATCTTAGAGGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185130945 54 - 198365852 GTTTTCCAATCTCCCCAAGTATTTAAAGGACCCAACCCAGCCCATCTTAGAGGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972078 54 - 192294377 GTTTTCCAATCTCCCCAAGTATTTAAAGGACCCAACCCAGCCCATCTTAGAGGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352600 54 - 180432695 GTTTTCCAATCTCCCCAAGTATTTAAAGGACCCAACCCAGCCCATCTTAGAGGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629208 54 -  90373283 GCTTTCCAATCTCCCCAAGTATTTAAAGGACCCAACCCAGCCTATCTTAGAGGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37431225 53 +  50472720 GCTTTTTAAT-TCCCCAAGTATTTAAAGGACCCTGCTCAGCCCATCTTAGATGC
i calJac3.chr21             C 0 I 730
s mm10.chr16                 91562851 54 +  98207768 GCCTTCTATCCTTTTCTAGTATCTAAAGGACCCAGACCAATTCATCTTAGAGGT
i mm10.chr16                I 1063 C 0
s canFam3.chr31              28048925 54 +  39895921 GGTTTTCAACCTTTTCTAGTATTTAAAGGACCCAAGCCAGCCTATCTTAGAGGC
i canFam3.chr31             C 0 C 0

a score=304926.000000
s hg38.chr21_GL383581v2_alt     31434 67 +    116689 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATTATCTCGTTTCCGGAA
s panTro4.chr21              19535122 67 +  32799110 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATTATCTCGTTTCCGGAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431691 67 +  48394510 CTTGGACAAGGACAGCTCACCAAAAGATGACGTCTGGGACTCTGTGT-CCATTATCTCGTTTCCAGAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19963996 68 +  32716333 CTTGGACAAGGACAGCTCACCAAAGGATGATGTCTGGGACTCTGTATCCCATTATCTCGTTTCCAGAA
i nomLeu3.chr25             C 0 M 2512
s rheMac3.chr3              185130999 67 - 198365852 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATCATTTCCTTTCCAGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972132 67 - 192294377 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATCATTTCCTTTCCAGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352654 67 - 180432695 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATCATTTCCTTTCCAGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629262 67 -  90373283 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATCATTTCCTTTCCAGAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37432008 67 +  50472720 CTTGGACAAGGACAGCTCACCAAAGGATGACGTCTGGGACTCTGTGT-CCATCATTTCATTTCCAGAA
i calJac3.chr21             I 730 C 0
s mm10.chr16                 91562905 67 +  98207768 CTTGGACAAGGACGGTTCACCGAAGGAGGACTCCTGGGACTCCGTGT-CAATTATTTCTTCTCCAGAA
i mm10.chr16                C 0 C 0
s canFam3.chr31              28048979 67 +  39895921 CCTGGACAAGGACAGCTCGCCAAAGGATGACGCCTGGGACTCTGTGT-CCATAGTTTCGTTTCCAGAG
i canFam3.chr31             C 0 C 0

a score=509807.000000
s hg38.chr21_GL383581v2_alt     31501 197 +    116689 AAGGAGCAAGAAGATGTTCTCCAAA-CGCTTTGAACCAAAGCATGGGCCTAGCCCACTGGCTCCCTGGAAGAG---ATCAAGCCATCGGAGCTGCTAGAGTT-CTGTCTGGACTTTCCAGAGACCAGTATTCCCTTTTGCTGCCTCTAAAAGGCCTGTCCCTGCAGACATGA--------------GAGACAGC--AGGTCTCA----TGGGGGTGACAAGC
s panTro4.chr21              19535189 214 +  32799110 AAGGAGCAAGAAGATGTTCTCCAAA-CGCTTTGAAGCAAAGCATGGGCCTAGCCCACCGGCTCCCTGGAAGAGATCATCAAGCCATCGGAGCTGCTAGAGTT-CTGTCTGGACTTTCCAGAGACCAGTATTCCCTTTTGCTGCCTCTAAAAGGCCTGTCCCTGCAGACATGAGAGACAGCAGGTCTGAGACAGC--AGGTCTCA----TGGGGGTGACAAGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431758 200 +  48394510 AAGGAGCAAGAAGATGTTCTCCAAA-CACTTTGAACCAAAGCATGGGCCTAGCCCACCGGCTCCCTGGAAGAGATCATCGAGCCATCGGAGCTGCTGGAGTT-CTGTCTGGACTTTCCAGAGACCAGTATTCCCTTTTGCTGCCTCTAAAAGGCCTGTCCCTGCAGACATGA--------------GAGACAGC--AGGTCTCA----TGGGGGTGACAAGC
i ponAbe2.chr21             C 0 I 6
s rheMac3.chr3              185131066 199 - 198365852 AAGGAGCAAGAAGATGTTCTCCAAA-CACTTTGAACCAAAGCATGGGTCTAGCCCACTGGCCCCCTGGAAGAGATCGTCGAACCAGTGGAGCTGCTGGAGTT-CTGTCTGGACTTCCCAGAGACCAGTATTCCCTTTTCCTGCCTCTAAAAGGCCTGTCCCTGCCT-TGTGA--------------GAGACAGT--GGGTCTCA----TGGGGGTGACAAGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972199 199 - 192294377 AAGGAGCAAGATGATGTTCTCCAAA-CACTTTGAACCAAAGCATGGGTCTAGCCCACTGGCCCCCTGGAAGAGATCGTCGAACCAGTGGAGCTGCTGGAGTT-CTGTCTGGACTTCCCAGAGACCAGTATTCCCTTTTCCTGCCTCTAAAAGGCCTGTCCCTGCCT-TGTGA--------------GAGACAGT--GGGTCTCA----TGGGGGTGACAAGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352721 199 - 180432695 AAGGAGCAAGAAGATGTTCTCCAAA-CACTTTGAACCAAAGCATGGGTCTAGCCCACTGGCCCCCTGGAAGAGATCGTCGAACCAGTGGAGCTGCTGGAGTT-CTGTCTGGACTTCCCAGAGACCAGTATTCCCTTTTCCTGCCTCTAAAAGGCCTGTCCCTGCCT-TGTGA--------------GAGACAGT--GGGTCTCA----TGGGGGtgacaagc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629329 199 -  90373283 AAGGAGCAAGAAGATGTTCTCCGAA-CACTTTGAACCAAAGCATGGGTCTAGCCCACTGGCCCCCTGGAAGAGATCGTTGAACCAGTGGAGCTGCTGGAGTT-CTGTCTGGACTTCCCAGAGACCAGTATTCCCTTTTCCTGCCTCTAAAAGGCCTGTCCCTGCCT-TGTGA--------------GAGACAGT--GGGTCTCA----TGGGGGTGACAAGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37432075 199 +  50472720 AAGGGGCAAGAAGATGTTCTCCAAA-CACATTGAGCCAAAGCATGGGTCTGGCCCATCAGCCCCCTGGAAGAGGCCATCACGCCAGCGGAGCTGCTGGAATT-CTGTCTGGACTTTACAGAGACCAGTATTCCCTTTTCCTGCCTCCAAAAGGCATGTCCCTGCCT-TGTGA--------------GAGACCGT--GGGTCTCA----TGGGAGTGACAAGC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91562972 120 +  98207768 AAGGAGCGAGATGATGTGCTCCAAA-CACCGTGAACCAGGCCA-GGGTCT------CTGCTTGCCCAGGAGGG--------------------------------------------CAGCGATCAGTGCACC----------------------------------CGAGA--------------GAGATCCCCAGGGCCCCAGGACTGGGGAAGATGG--
i mm10.chr16                C 0 C 0
s canFam3.chr31              28049046 200 +  39895921 AAGGAGCGAGAAGATGTTCTCCAAAGCACTTTGAACTAAAACTCTGGTCCAGTCAGCCAGCCTGTGGGATGAGAGCTCTGAGCCATTGAAGCTGCTGACGTTCCTGTCAGGACTTTACGGAGCCCTGCATTCCATAGTCCTGCCCCCAGAA-GCCCGATGGTGCTT-TGGAA--------------GATGTAAC--AGGTCTCA----TGGGGGAGGCACAC
i canFam3.chr31             C 0 C 0
e nomLeu3.chr25              19964064 2512 +  32716333 M

a score=91708.000000
s hg38.chr21_GL383581v2_alt     31698 27 +    116689 -TTTTTTTTTTTTTCTT-----AAAGAATTTTC
s panTro4.chr21              19535403 27 +  32799110 -TTTTTTTTTTTTTCTT-----AAAGAATTTTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431964 27 +  48394510 -TTTTTTTTTTTTTCTT-----GAAGAATTTTC
i ponAbe2.chr21             I 6 C 0
s nomLeu3.chr25              19966583 27 +  32716333 -tttttttttttttctt-----GAAGAATTTTC
i nomLeu3.chr25             M 2512 C 0
s rheMac3.chr3              185131265 27 - 198365852 -TTTTTTTTTTTTTCTT-----GAAGAATTTTC
i rheMac3.chr3              C 0 I 1172
s macFas5.chr3              178972398 27 - 192294377 -TTTTTTTTTTTTTCTT-----GAAGAATTTTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167352920 25 - 180432695 ---tttttttttttctt-----gaagaattttc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629528 26 -  90373283 --TTTTTTTTTTTTCTT-----GAAGAATTTTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37432274 25 +  50472720 ---TTTTCTTTTTTCTT-----GAAGAATTTTC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91563092 27 +  98207768 -TGTAGTGTTTGTTCTT-----TATGAGTTTTC
i mm10.chr16                C 0 C 0
s canFam3.chr31              28049246 33 +  39895921 TTATTTTTTTTTTCCTTTAAACTAAGGGTTTTC
i canFam3.chr31             C 0 C 0

a score=21378.000000
s hg38.chr21_GL383581v2_alt     31725 13 +    116689 AAAATCAAA------TTCC
s panTro4.chr21              19535430 18 +  32799110 AAAATCAAACAAGT-TTCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34431991 18 +  48394510 AAAATCAAACAAGT-TTCC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19966610 17 +  32716333 AAAATCAAACAAG--TTCC
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178972425 17 - 192294377 AAAATGAAACAAGT-TTT-
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167352945 17 - 180432695 aaaatgaaacaagT-TTT-
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31629554 17 -  90373283 AAAATGAAACAAGT-TTT-
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37432299 18 +  50472720 AAAATCATATAAGT-GTCC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91563119 18 +  98207768 TGGATGCTACAAGTATTT-
i mm10.chr16                C 0 C 0
s canFam3.chr31              28049279 17 +  39895921 -TAATCATACAAGT-TTCC
i canFam3.chr31             C 0 C 0
e rheMac3.chr3              185131292 1172 - 198365852 I

a score=1008452.000000
s hg38.chr21_GL383581v2_alt     31738 296 +    116689 AGAATGATTTTACGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGGCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATACTTTTTTCATTATTGGTtgggctgagcagtcagaagacctgg----tcgtcgtcttgactttggcaaatgagccggagccccttgggcaggtcacacaa--------------------cctgtcccagcGAGGGACACCGAGTGG-CCCTTCATGTACATCCATGGTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCTTGTAAATATACTCCTAGTAATTT
s panTro4.chr21              19535448 296 +  32799110 AGAATGATTTTACGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGGCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATACTTTTTTCATTATTGGTtgggctgagtagtcagaagacctgg----tcgtcttcttgactttggcaaatgagccggagccccttgggcaggtcacacaa--------------------cctgtcccagcGAGGGACACTGAGTGG-CCCTTCATGTACATCCATGGTGTGCTGGCTTACA------------------------------------------------------------------------ATGTAATTAATCTTGTAAATATACTCCTAGTAATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34432009 296 +  48394510 AGAATGATTCTACGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGGCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATGCTTTTTTCATTATTGGTTgggctgagcagtcagaagacctgg----tcttcttcttgactttggcaaatgagccggagcccctcgggcaggtcacacaa--------------------cctGTGCCAGCAAGGGACACTGAGTGG-CCCTTCATGTACGTCCATGGTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCTTGTAAATATACTCCTAGTAATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19966627 294 +  32716333 AGAATGATTCTACGG--AGATAT-CCAGGA-------------------AAATTAAG-GC-TCTCTTAAACACTAAAAAGCCATGTAATTGCTTGTTA---GCAGAATGGATATGACACATC----TCTGATACTTTTTTCATTATTGGTTGGGCTGAGCAGTCAGAAGACCTGG----TCTTTTTCTTGACTTTGGCAAATGAGCCAGAGCCCCTCGGGCAGGTCACACAA--------------------CCTGTCCCAGCAAGGGACACTGAGTGG-CCCTTCATGTATGTCCATGGTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCTTGTAAATATACTCCTAGTAATTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185132464 303 - 198365852 AGAATGATTCTATGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGTCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATACTTTTTTCATTGT---TTgggctgagcagtcagaagacgtgg----tcttcttctcaacttcagcaaatgagccggagcccctcgggcaggtcacacaa----------cctgtcccagcctGTCCCAGTGAAGGACACTGAGTGG-CCCTTCATGTACTTCCATGGTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCCTGTAAATATACTCCTAGTAATTT
i rheMac3.chr3              I 1172 C 0
s macFas5.chr3              178972443 303 - 192294377 AGAATGATTCTATGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGTCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATACTTTTTTCATTGT---TTGGGCTGAGCAGTCAGAAGACGTGG----TCGTCTTCTCAACTTCAGCAAATGAGCCGGAGCCCCTCGGGCAGGTCACACAA----------CCTGTCCCAGCCTGTCCCAGTGAAGGACACTGAGTGG-CCCTTCATGTACTTCCATGGTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCCTGTAAATATACTCCTAGTAATTT
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167352963 313 - 180432695 AGAATGATTCTATGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGTCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATACTTTTTTCATTGT---TTGGGCTGAGCAGTCAGAAGACGTGG----TCTTCTTCTCAACTTCAGCAAATGAGCTGGAGCCCCTCGGGCAGGTCACACAAcctgtcccagcctgtcccagcctgtcccagTGAAGGACACTGAGTGG-CCCTTCATGTACTTCCATGGTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCCTGTAAATATACTCCTAGtaattt
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31629572 293 -  90373283 AGAATGATTCTATGG--AGATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGTCATGTAATTGCTTGTTA---GCAAAATGGATATGACACATC----TCTGATACTTTTTTCATTGT---TTGGGCTGAGCAGTCAGAAGACCTGG----TCTTCTTCTCAACTTCAGCAAATGAGCCAGAACCCCTCGGGCAGGTCACATAA--------------------CCTGTCCCAGTGAGGGACACTGAGTGG-CCCTTCATGTACGTCCATGCTGTGCTGGCTTAAA------------------------------------------------------------------------ATGTAATTAATCCTGTAAATATACTCCTAGTAATTT
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37432317 303 +  50472720 AGAATGATTCTACAG--AAATATCCCAGGA-------------------AAATTAAG-GCTTCTCTTAAACACTAAAAAGGCATGTAATT-CTTGTTG---GCAAAACAGATGTGACACATC----TCTGATACATTTTTTATTGTTGGTTgggctgagcggtgaggagacctgg-ccttcatcttctcaactttggcaaatgagccggagccccttgggcaggtcacacaa----------cctgtcccagcctGTCCTAGAGAGTGAC-CTGAGTGG-CCCTTC----ACATTCACAGTGTGCTGGCTTCAA------------------------------------------------------------------------ATGTAATTAATCCTGTAAATATATTCCTAGTAATTT
i calJac3.chr21             C 0 I 303
s mm10.chr16                 91563137 379 +  98207768 AAAAGGATTCCACAGAAAGATATCTcagaaacaaaacaaaaacaaaaacaaaCCAAGCGCTTCTCTTAAACACTAAAAAGAC----AACTGCTCATTACTGGCAACGTGG---CGGCAAACCTGTGTGTGGTGCTTTCTCCAGTGTTAGCTGCCCCT-GCTGTCAGAAGACTGGGTCCTTCCTTGCCTTCACTCTGGAAAATGAGTTG-----TCCCAGCCA----ACCCTG--------------------CCTGTCACAAAGAGGGGCCCTTAGTGTCCCCTTCATGTCC------AATGTGATGGCTTAAATGTGAGACCCCTGGGCTCGGTGCTTGCCTAGCACGTACACGCCCCACCCACCCCAGCACCTCACTCACAGAGAGGTGATTAATCTTGTAAATAATGTCCTGGTAATTT
i mm10.chr16                C 0 C 0
s canFam3.chr31              28049296 276 +  39895921 AGAATTATTATACAG--AGATATCCCAGAA-------------------AAATTAAG-ATTTCTCTTAAACACTAAAAAGCCATGCAATTATTTGTCA---GCAAAATGTCTCTGACACACC------TGATGTTTTGCTCATTG-------------GCAGCAGGGACACGGGG----TCCTCTCCTTGACT---------------GGACCCCTCAAGCAGATCACATAA------CCTGTCTGTCCCAGCCTGTCCCAACAAGGGACAATGAGTGG-CCCTTC-TTCATATCCA--GTCTCTCAGCTTAAA------------------------------------------------------------------------ATGTGATTAGTCCTGTAAATATTATCCT-GCGATTT
i canFam3.chr31             C 0 C 0

a score=204200.000000
s hg38.chr21_GL383581v2_alt     32034 63 +    116689 AAG-------ATTTTGTTTTTA----AACTG-GAAATAAAAGATTGTATAGTGCATG-----TTTTTTAAAGTCTATGTG
s panTro4.chr21              19535744 63 +  32799110 AAG-------ATTTTGTTTTTA----AACTG-GAAATAAAAGATTGTATAGTGCATG-----TTTTTTAAAGTCTATGTG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34432305 67 +  48394510 AAG-------ATTTTGTTTTTAAACTAACTG-GAAATAAAAGATTGTATAGTGCATG-----TTTTTTAAAGTCTATGTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19966921 63 +  32716333 AAG-------ATTTTGTTTTTA----AACTA-GAAATAAAAGATTGTATGGTGCATG-----TTTTTTAAAGTCTATGTG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185132767 65 - 198365852 AAG-------ATTTTGTTTTTA----AACTA-GAAATAAAAGACTGTATAGCACATG---TTTTTTTTTAAGTCTATGTG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972746 65 - 192294377 AAG-------ATTTTGTTTTTA----AACTA-GAAATAAAAGACTGTATAGCACATG---TTTTTTTTTAAGTCTATGTG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167353276 65 - 180432695 aag-------attttgttttta----aacta-gaaataaaagactGTATAGcacatg---tttttttttaagtctatgtG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629865 66 -  90373283 AAG-------ATATTGTTTTTA----AACTA-GAAATAAAAGACTGTATAGCGCATA--TTTTTTTTTTAAGTCTATGTG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37432923 62 +  50472720 AAG-------ATTTTGTTTTTA----AGCTA-GAAATAAAAGACTGTA--ATGCATG----TTTTCTAAAAGTCTGTGTG
i calJac3.chr21             I 303 C 0
s mm10.chr16                 91563516 75 +  98207768 AAGTCTTTTTTTTTTTTTTTTA----ATCTA-GAGATAAAAGATTGTATGTTAAACTTTTTTTTTTTTTAAGTCTATCTg
i mm10.chr16                C 0 I 1987
s canFam3.chr31              28049572 68 +  39895921 AAGCCTTT--TTTTTTTTTTCA----GGCTAGGGAATAAAAGATTGTGTAATTAACT------TTTTACAAGTCAATGTG
i canFam3.chr31             C 0 C 0

a score=233635.000000
s hg38.chr21_GL383581v2_alt     32097 70 +    116689 AAGTGTTTT-----------CTTTATTGTAGCC-----TATTTTCTGCAGAGTTTCAGCTTTCT-AAAATTACTCAATCTAAACTTG
s panTro4.chr21              19535807 70 +  32799110 AAGTCTTTT-----------CTTTATTGTAGCC-----TATTTTCTGCAGAGTTTCAGCTTTCT-AAAATTACTCAATCTAAACTTG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34432372 70 +  48394510 AAGTCTTTT-----------CTTTATTGTAGCC-----TATTTTCTGCAGAGTTTCAGCTTTTT-AAAATTACTCAATCTAAACTTG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19966984 70 +  32716333 AAGTCTTTT-----------CTTTATTGTAGCC-----TATCTTCTGCAGAATTTCAGCTTTTT-AAAATTACTCAATCTAAACTTG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185132832 70 - 198365852 AAGTCTTTT-----------CTTTATTGTAGCT-----TATTTTCTGCAGAGTTTCAGCTTTTT-AAAATTACTCAATCTAAACTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972811 70 - 192294377 AAGTCTTTT-----------CTTTATTGTAGCT-----TATTTTCTGCAGAGTTTCAGCTTTTT-AAAATTACTCAATCTAAACTTG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167353341 71 - 180432695 AAGTCTTTT-----------CTTTATTGTAGCC-----TATTTTCTGCAgagtttcagctttttaaaaattactcaatctaaacttg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31629931 70 -  90373283 AAGTCTTTT-----------CTTTATTGTAGCC-----TATTTTCTGCAGAGTTTCAGCTTTTT-AAAATTACTCAATCTAAACTTG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37432985 68 +  50472720 AAGTCTTTT-----------CTTTATTGTAGCC-----AATTTTCTGCAG--TTTCAACTTTTT-AAAATTACTCAATCTAAACTTG
i calJac3.chr21             C 0 I 328
s canFam3.chr31              28049640 85 +  39895921 -AATGTTGTGCTGCTTTCCACTTTATTTTGGCCTTCTTTATTTTCTGCAAAGTTCCAACTCCTA-AAAATCACTATATCTGCATTTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I

a score=319950.000000
s hg38.chr21_GL383581v2_alt     32167 98 +    116689 TTTTT-TCTTAAATAACACCTGCTAGAGCTACTGAGGCCTCATGGGAACTCAGCAAACACTTCCTATGGATGTCACTTGATCCTCCAAA-GGTTATAAAG
s panTro4.chr21              19535877 94 +  32799110 TTTTT-TCT----TAACACCTGCTAGAGCTACTGAGGCCTCATGGGAACTCAGCAAACACTTCCTATGGATGTCACTTGATCCTCCAAA-GGTTATAAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34432442 98 +  48394510 TTTTT-TCTTAAATAACACCTGCTAGAGCTACTGAGGCCTCATGGGAACTGAGCAAACACTTCCTATGGATGTCACTTGATCTTCCAAA-GGTTATAAAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19967054 98 +  32716333 TTTTT-TCTTAAATAACACCTGCTAGAGCTACTGAGGCCTCACGGGAACTCAGCAAACACTTCCTATGGATGTCACTTGATCCTCTAAA-GGTTATAAAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185132902 98 - 198365852 TTTTT-TCTTAAATAACACCTGCTAGAGCTACAGAGGCCTCACGGGAACTCAGCAAACACTTCCTGTGGATGTTACTTGATCCTCCAAA-GGTTATAAAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972881 98 - 192294377 TTTTT-TCTTAAATAACACCTGCTAGAGCTACAGAGGCCTCACGGGAACTCAGCAAACACTTCCTGTGGATGTTACTTGATCCTCCAAA-GGTTATAAAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167353412 99 - 180432695 tttttctcttaaataaCACCTGCTAGAGCTACAGAGGCCTCATGGGAACTCAGCAAACACTTCCTGTGGATGTTACTTGATCCTCCAAA-GGTTATAAAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31630001 98 -  90373283 TTTTT-TCTTAAATAACACCTGCTAGAGCTACAGAGGCCTCACGGGAACTCAGCAAACACTTCCTGTGGATGTTACTTGATCCTCCAAA-GGTTATAAAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37433381 94 +  50472720 TTTTT-TCT----TAACACCTAGTAGAGCTAATGAGGCCTTATAGGAACTCAGCAAACACTTCCTGTGGATGTCACTTGATCCTCCAAA-AGTTATAAAG
i calJac3.chr21             I 328 C 0
s canFam3.chr31              28049725 99 +  39895921 CGTTT-TCTTAAGTGATACCCAGTGGAGCTACCAAGGCCTCATGATCACTCAGAGGGAACAGTCTGCGTGCATCCCTTGGTTCCTTAGGCAGGTATAAAG
i canFam3.chr31             C 0 I 215
e mm10.chr16                 91563591 1987 +  98207768 I

a score=1758749.000000
s hg38.chr21_GL383581v2_alt     32265 615 +    116689  
s panTro4.chr21              19535971 612 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34432540 620 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19967152 605 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185133000 611 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178972979 690 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167353511 603 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31630099 606 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37433475 588 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28049824 215 +  39895921 I

a score=118963.000000
s hg38.chr21_GL383581v2_alt     32880 33 +    116689 TAAGGGGGATTTGCAGAAGGCACATTAGCACTT
s panTro4.chr21              19536583 33 +  32799110 TAAGGGGGATTTGCAGAAGGCACATTAGCACTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433160 33 +  48394510 TAAGGGGGATTTGCAGAAGGCACATTAGCACTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19967757 33 +  32716333 TAATGGGGATTTGCAGAAGGCACATTAGCACTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185133611 33 - 198365852 TAAGGGGGATTTGCAGAAGGCACATTAGCACTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178973669 33 - 192294377 TAAGGGGGATTTGCAGAAGGCACATTAGCACTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167354114 33 - 180432695 taagGGGGATTTGCAGAAGGCACATTAGCACTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31630705 33 -  90373283 TAAGGGGGATTTGCAGAAGGCACATTAGCACTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37434063 33 +  50472720 taaaGGGGGTTTACTGAAGGCACACCAGCACTC
i calJac3.chr21             C 0 I 306
s canFam3.chr31              28050039 33 +  39895921 TAAAGGGCACTTTCAGAAGCTGCATGAGCACTT
i canFam3.chr31             I 215 C 0
e mm10.chr16                 91563591 1987 +  98207768 I

a score=12452.000000
s hg38.chr21_GL383581v2_alt     32913 4 +    116689 CATT
s panTro4.chr21              19536616 4 +  32799110 CATT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433193 4 +  48394510 CATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19967790 4 +  32716333 CATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185133644 4 - 198365852 CATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178973702 4 - 192294377 CATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167354147 4 - 180432695 CATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31630738 4 -  90373283 CATT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28050072 4 +  39895921 CACT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e calJac3.chr21              37434096 306 +  50472720 I

a score=663179.000000
s hg38.chr21_GL383581v2_alt     32917 223 +    116689 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGGATTTGTGGGCAATAAAGAGAATTAACTGATTAATCAATAGTAATGTTATCTACTGAGCACGCAAGTCATCTGATTGTGTCAGTACTGTCGGGCTCTGTTGTTCAAAGGATATGTATTTAAAATCCATTTATAggctgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggc
s panTro4.chr21              19536620 223 +  32799110 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGGATTTGTGGGCAATAAAGATAATTAACTGATTAATCAATAGTAATGTTATATACTGAGCACGCAAGTCATCTGATTGTGTCAGTACTGTCGGGCTCTGTTGTTCAAAGGATATGTATTTAAAATCCATTTATAggctgggcatggtggctcacacctgtaatcccagcactttgggaggccgaggc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433197 223 +  48394510 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGGATTTGTGGGCAATAAAGAGAATTAACTGATTAATCAATAGTAGTGTTATCCACTGAGCACGCAAGTCATCTGACTGTGTCAGTATTGTTGGGCTCTGTTGTTCAAAGGATATGTATTTAAAATCCACTTACAggctgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19967794 223 +  32716333 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGGATTTGTGGGCAATAAAGAGAATTAACTGATTAATCAATAGTAGTGTTATCCACTGAGCATGCAAGTCATCTGATTGTGTCAGTATTGTCGGGCTCTGTTGTTCAAAGGATATGTATTTAAAATCCATTTATAggctgggcacggtggctcacacctgtaatcccaacactttggaaggccgaggc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185133648 214 - 198365852 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGCGTTTGTGGGCAATAAAGATAATTAACTGATTAATCAGTAGTAG---TAGCCACTGAGCACGCAAGTCATC------TGTCAGTATTGTTGGGCTCTGTTGTTCAAAGGATATGTATTTAAAATCCATTTATAggctgggcgcagtggctcacacctgtaatcccagcactttgggaggctgaggc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178973706 214 - 192294377 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGCGTTTGTGGGCAATAAAGATAATTAACTGATTAATCAGTAGTAG---TAGCCACTGAGCACGCAAGTCATC------TGTCAGTATTGTTGGGCTCTGTTGTTCAAAGGATATGTATTTAAAATCCATTTATAggctgggcgcagtggctcacacctgtaatcccagcactttgggaggctgaggc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167354151 217 - 180432695 TATATGTGACAAGTCACACTGTGTTGACCAAGGCAGGCGTTTGTGGGCAATAAAGATAATTAACTGATTAATCAATAGTAGTATTAGCCACTGAGCACGCAAGTCATC------TGTCAGTATTGTTGGGCTCTGTTGTTCAAAGGATATGtatttaaaatccatttataggctgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31630742 217 -  90373283 TATATGTGACAAGTCACACTGTGTTGACGAAGGCAGGCGTTTGTGGGCAATAAAGATAATTAACTGATTAATCAATAGTAGTATTAGCCACTGAGCACGCAAGTCATC------TGTCAGTATTGTTGGGCTCTGTTGTTCAAAGGGTATGTATTTAAAATCCATTTATAggctgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37434402 190 +  50472720 TATATGTAACAAGTCACACCGTGTTGACCAAGGCAGGGGTTCATGGGCAATAAAGAGA--------ACTAATCAGTAGTAGTGTTATGCAAAGAGCACACA-------------------------CTGGCTCTTTTGTTCAAAGGATATGTATTTAAAATCCACTTATAggccaggctcggtggctcatgcctgtaatcccagcactttgggaggctgaggt
i calJac3.chr21             I 306 C 0
s canFam3.chr31              28050076 187 +  39895921 ----TTTTAGGAGTTG---TGTGTTGACCAAGGCAGGGGCTTGTAGACAGTAAAGAGAATTCGCTGATGGA-CAACAGTGA---TAACCACGGGGCATTGCACTCTTCTGATGAGGGAAGTATTGACAGGTTCTTTGGTTCAAAGGCTTTGGATTGAAAATCCATTT-------------------------CTGGGACCCTTGACATTTGGGAAATGGATGT
i canFam3.chr31             C 0 I 212
e mm10.chr16                 91563591 1987 +  98207768 I

a score=387633.000000
s hg38.chr21_GL383581v2_alt     33140 129 +    116689 aggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaagcctgtctccactaaaagcacaaaaattagctgagtgtggtggcaggcacctataatcccagctacatgggaggc
s panTro4.chr21              19536843 129 +  32799110 aggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaagcctgtctctactaaaagcacaaaaattagctgagtgtggtggcaggcacctataatcccagctacatgggaggc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433420 129 +  48394510 gggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaagcacaaaaattagctgagtgtggtggcaggcacctataatcccagctacatgggaggc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19968017 129 +  32716333 aggcagatcacctgagatcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaagcacaaaaattagctgagtgtggtggcaggcacctgtaattccagctacatgggaggc
i nomLeu3.chr25             C 0 I 620
s rheMac3.chr3              185133862 129 - 198365852 aggcggatcacctgaggtcaggtgttcgagaccagcttggccaacatggtgaaaccccatctctactaaaagcacaaaaattagctgagtgtggtggcaggcccctgtaatcccagctacatgggaggc
i rheMac3.chr3              C 0 I 606
s macFas5.chr3              178973920 129 - 192294377 aggcggatcacctgaggtcaggtgttcgagaccagcttggccaacatggtgaaaccccatctctactaaaagcacaaaaattagctgagtgtggtggcaggcccctgtaatcccagctacatgggaggc
i macFas5.chr3              C 0 I 623
s papAnu2.chr3              167354368 129 - 180432695 aggcggatcacctgaggtcaggtgttcgagaccagcttggccaacatggtgaaaccccatctctactaaaagcacaaaaattagctgagtgtggtggcaggcccctgtaatcccagctacatgggaggc
i papAnu2.chr3              C 0 I 626
s chlSab2.chr2               31630959 129 -  90373283 gggcggatcacctgaggtcaggtgtttgagaccagcttggccaacatggtgaaaccccatctctactaaaagcacaaaaactagctgagtgtggtggcaggcccctgtaatcccagctacatgggaggc
i chlSab2.chr2              C 0 I 625
s calJac3.chr21              37434592 123 +  50472720 gggcagatcccctgaagtcaggagttcaagatctgcctggccaagatggtgaaaccctgtctcc---aaaagcacaaaa---agccaagcgtgatggcaggcgcctgtaatcccagctacatgggaggc
i calJac3.chr21             C 0 I 309
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I

a score=273.000000
s hg38.chr21_GL383581v2_alt     33269 1 +    116689 A
s panTro4.chr21              19536972 1 +  32799110 A
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433549 1 +  48394510 A
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I
e rheMac3.chr3              185133991 606 - 198365852 I
e calJac3.chr21              37434715 309 +  50472720 I
e chlSab2.chr2               31631088 625 -  90373283 I
e papAnu2.chr3              167354497 626 - 180432695 I
e macFas5.chr3              178974049 623 - 192294377 I
e nomLeu3.chr25              19968146 620 +  32716333 I

a score=1500.000000
s hg38.chr21_GL383581v2_alt     33270 1 +    116689 G
s panTro4.chr21              19536973 1 +  32799110 G
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433550 1 +  48394510 G
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19968766 1 +  32716333 G
i nomLeu3.chr25             I 620 C 0
s macFas5.chr3              178974672 1 - 192294377 G
i macFas5.chr3              I 623 C 0
s chlSab2.chr2               31631713 1 -  90373283 G
i chlSab2.chr2              I 625 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I
e rheMac3.chr3              185133991 606 - 198365852 I
e calJac3.chr21              37434715 309 +  50472720 I
e papAnu2.chr3              167354497 626 - 180432695 I

a score=1911.000000
s hg38.chr21_GL383581v2_alt     33271 1 +    116689 T
s panTro4.chr21              19536974 1 +  32799110 T
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433551 1 +  48394510 T
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19968767 1 +  32716333 T
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178974673 1 - 192294377 T
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167355123 1 - 180432695 t
i papAnu2.chr3              I 626 C 0
s chlSab2.chr2               31631714 1 -  90373283 T
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I
e rheMac3.chr3              185133991 606 - 198365852 I
e calJac3.chr21              37434715 309 +  50472720 I

a score=2548.000000
s hg38.chr21_GL383581v2_alt     33272 1 +    116689 T
s panTro4.chr21              19536975 1 +  32799110 T
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433552 1 +  48394510 T
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19968768 1 +  32716333 T
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178974674 1 - 192294377 T
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167355124 1 - 180432695 t
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31631715 1 -  90373283 T
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37435024 1 +  50472720 T
i calJac3.chr21             I 309 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I
e rheMac3.chr3              185133991 606 - 198365852 I

a score=108420.000000
s hg38.chr21_GL383581v2_alt     33273 43 +    116689 GGGGCCCTGTACTGCTGGTAAGAAAGTGGC-----tttttttttttct
s panTro4.chr21              19536976 48 +  32799110 GGGGCCCTGTACTGCTGGTAAGAAAGTGGCttttttttttttttttct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433553 45 +  48394510 GGGGCCCTGTACTGCTGGTAAAAAAGTGGC---tttttttttttccct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19968769 43 +  32716333 GGGGCCCTGTACTGCTGGTAAGAAAGTGGCTAACTTTTTTTTT-----
i nomLeu3.chr25             C 0 I 4823
s rheMac3.chr3              185134597 41 - 198365852 GGGGCCCTGTACTGCTGGTAAGAAAGTGGC-------tttttttcttt
i rheMac3.chr3              I 606 I 1
s macFas5.chr3              178974675 45 - 192294377 GGGGCCCTGTACTGCTGGTAAGAAAGTGGC---tttttttttttcttt
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167355125 46 - 180432695 gggGCCCTGTACTGCTGGTAagaaagtggc--ttttttttttttcttt
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31631716 48 -  90373283 GGGGCCCCGTACTGCTGGTAAGAAAGTGGTCttttttttttttccttt
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37435025 47 +  50472720 GGGGCCCTGTACTGCTGGGAAGAAAATGGCttttttgttgttttctt-
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I

a score=89693.000000
s hg38.chr21_GL383581v2_alt     33316 42 +    116689 tttgagacagagtctcactctgtcgcccaggctggagcgcag
s panTro4.chr21              19537024 42 +  32799110 tttgagacagagtctcactctgtcgcccaggctggagtgcag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34433598 42 +  48394510 tttgagacagattctcgctctgtcccccaggctggagtgcag
i ponAbe2.chr21             C 0 I 1124
s rheMac3.chr3              185134639 40 - 198365852 tttgagacag--tctcactctgtcgcccaggctggagtgcag
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              178974721 40 - 192294377 tttgagacag--tctcactctgtcacccaggctggagtgcag
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167355172 40 - 180432695 tttgagacag--tctcactctgtcgcccaggctggagtgcag
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31631765 40 -  90373283 tttgagacag--tctcggtctgtcgcccaggctggagtgcag
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37435072 42 +  50472720 tttgagacaaagtcttgctctgttgcccaggctagaatgcag
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=409465.000000
s hg38.chr21_GL383581v2_alt     33358 246 +    116689 tggcgcgatctcagctcgctgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccgaatagctgggattacaggcgtgcaccactatgcctggctaa-tttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctc--atgatccacccaccttggtctcccaaagggttgagatcacaggcgtgagccaccgtgtccggcAAAAGT
s panTro4.chr21              19537066 246 +  32799110 tggcacaatctcagctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccgaatagctgggattacaggcgtgcaccactatgcctggctaa-tttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctc--atgatccacccaccttggtctcccaaagggttgagattacaggcgtgagccaccgtgtccggcGAAAGT
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185134679 245 - 198365852 tggcacgatcttggctcactacaacctccacctcccaggttcaagcaattctcctgcctcagactcctgaatagctggcattacaggcgtgcgccactatacccggctaa-tttttgtattttcagtagagatgaggtttcaccatattggccaggctgttctcgaactcctggcctt--gtgatctacctgcactggcctcccaaa-ggttgagattacaggcgtgagccaccgcatccggAGAAAGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178974761 245 - 192294377 tggcacgatcttggctcactacaacctccacctcccaggttcaagcaattctcctgcctcagactcctgaatagctggcattacaggcgtgcgccactatacccggctaa-tttttgtattttcagtagagatgaggtttcaccatattggccaggctgttctcgaactcctggcctt--gtgatctacctgcactggcctcccaaa-ggttgagattacaggcgtgagccaccgcatccggAGAAAGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167355212 245 - 180432695 tggcacgatcttggctcactacaacctccacctcccaggttcaagcaattctcctgcctcagactcctgaatagctggcattacaggcgtgcgccactatacccggctaa-tttttgtattttcagtagagatgaggtttcaccatattggccaggctgttctcgaactcctggcctt--gtgatctacctgcactggcctcccaaa-ggttgagattacaggtgtgagccaccgcatccggagAAAGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31631805 245 -  90373283 tggcacgatcttggctcactacaacctccacctcccaggttcaagcaattctcctgcctcagactcctgaatagctggcattacaggcgtgcgccactatgcccggctaa-tttttgtatttttagtagaaatgagggttcaccatattggccaggctgttctcgaactcctgacctt--gtgatctacctgcgttggcctcccaaa-ggttgagattacaggcgtgagccaccgcatccggAGAAAGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37435114 249 +  50472720 cagcccgatctcagctcactgcatcctccacttcccgggttcaggtgattctcctgcctcagccccccgagtagctgggactgcaggcacacaccaccacacctggctaattttttatacttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctggcctcaagtgatctgcctgccttggcctcccaaagtgctgggattacaggcaagagccactgcgcccagcAAAAGT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050263 212 +  39895921 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=687501.000000
s hg38.chr21_GL383581v2_alt     33604 350 +    116689 GGCTAACTCTCT---TAAGTGTTGTGTACCATGCTGTCTGCAGTGGCAAGAGTTAGAAAAACAAGGCCCACTCCCA---CCCCATGCACACAAGTCTCCCTGTGAAGCATCTGTTGTATGCATTAGGTGCACCTTAAGT-AGACAAGTTTGGAGGAAGAAGTTGTAGATAGGAGTTGTAAAGACTTACCTTAGACCGTTCAGGAAATCGGAGACAGAAGAGCTTCTTCTGTTGGGCAGCAGGATGGTGGCCAGCGAGGAGTGGAGGATACATCTATAGCAG---GAGAACAGGA-AAGAGTTTCAGCCCAGCAGGACAGAGGGCAAATCAACTCTGT--TAGGGTAAGTGCATCTGTGCCACC
s panTro4.chr21              19537312 349 +  32799110 GGCTAACTCTC----TAAGTATTGTGTACCATGCTGTCTGCAGTGGCAAGAGTTAGAAAAACAAGGCCCACTCCCA---CCCCATGCACACAAGTCTCCCTGTGAAGCATCTGTTGTATGCATTAGGTGCACCTTAAGT-AGACAAGTTTGGAGGAAGAAGTTGTAGATAGGAGTTGTAAAGACTTACCTTAGACCGTTCAGGAAATCGGAGACAGAAGAGCTTCTTCTGTTGGGCAGCAGGATGGTGCCCAGCGAGGAGTGGAGGATACATCTATAGCAG---GAGAACAGGA-AAGAGTTTGAGCTCAGCAGGACAGAGGGCAGATCAACTCTGT--TAGGGTAAGTGCATCTGTGCCACC
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185134924 350 - 198365852 GGCTAACTCTC----TAAGTATTGTGTGCCATGCTGTCTGCGGTGGCAAGAGTTAGACAAACAGGGCCCACTCCCA---CCCCATGCATGCAAGTCTCCCTGTGAAGCATCTGTTGTATGCATTAGGTGCACCTTAAGT-AGACAAGTTTGGAGGAAGAGGTCGTAGACAGGAATTGTAAAGACTTACCTTAGACCATTCAGGAAATCGGAGAC--AAGAGCTTCTTCTGTTGGGCAGCAGGATGGCGCCCAGTGAGGAGTGGAGGATACTTCCATAGCAGAAAGAGAACAGGA-AAGAGTTTGAGCCCAGCAGGACAGAGGGCAGATCAACTCTGT--TAGAGTAAGTGCGTCTGTGCCACC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178975006 350 - 192294377 GGCTAACTCTC----TAAGTATTGTGTGCCATGCTGTCTGCGGTGGCAAGAGTTAGACAAACAGGGCCCACTCCCA---CCCCATGCATGCAAGTCTCCCTGTGAAGCATCTGTTGTATGCATTAGGTGCACCTTAAGT-AGACAAGTTTGGAGGAAGAGGTCGTAGACAGGAATTGTAAAGACTTACCTTAGACCATTCAGGAAATCGGAGAC--AAGAGCTTCTTCTGTTGGGCAGCAGGATGGCGCCCAGTGAGGAGTGGAGGATACTTCCATAGCAGAAAGAGAACAGGA-AAGAGTTTGAGCCCAGCAGGACAGAGGGCAGATCAACTCTGT--TAGAGTAAGTGCGTCTGTGCCACC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167355457 350 - 180432695 GGCTAACTCTC----TAAGTATTGTGTGCCATGCTGTCTGCGGTGGCAAGAGTTAGACAAACAGGGCCCACTCCCA---CCCCATGCATACAAGTCTCCCTGTGAAGCATCTGTTGTATGCATTAGGTGCACCTTAAGT-AGACAAGTTTGGAGGAAGAGGTCGTAGATAGGAATTGTAAAGACTTACCTTAGACCATTCAGGAAATCGGAGAC--AAGAGCTGCTTCTGTTGGGCAGCAGGATGGCACCCAGTGAGGAGTGGAGGATACATCCATAGCAGAAAGAGAACAGGA-AAGAGTTTGAGCCCAGCAGGACAGAGGGCAGATCAACTCTGT--TAGAGTAAGTGCGTCTGTGCcacc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31632050 350 -  90373283 GGCTAACTCTC----TAAGTATTGTGTACCATGCTGTCTGCGGTGGCAAGAGTTAGACAAACAAGGCCCACTCCCA---CCTCATGCATGCAAGTCTCCCTATGAAGCATCTGTTGTATGCATTAGGTGCACCTTAAGT-AGACAAGTTTGGAGGAAGAGGTCGTAGATAGGAATTGTAAAGACTTACCTTAGACCATTCAGGAAATCGGAGAC--AAGAGCTTCTTCTGTTGGGCAGCAGGATGGCGCCCAGTGAGGAGTAGAGGATACATCCATAGCAGAAAGAGAACAGGA-AAGAGTTTGAGCCCAGCAGGACAGAGGGCAGATCAACTCTGT--TAGAGTAAGTGCGTCTGTGCCACC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37435363 350 +  50472720 GGCTGACTTTTT---TAAGTATTGTGTACCATGCTGTCTAGGGTGGCAAGAGTTAAAACAACAAGGCCCACTCCCA---CCCCATGCATGCAAGTCCCCCTGTGAGGCATCTGTTGTATGCATTAGGTGCACCTGAAAT-AGACATGTTTGAAGGTAGAGGTCATAGATAGGAATTGTAAAGACTTACCTTAGACCATTCAGGAAATTGGAGACAGAAGAGCTTTTTCTGTTGGGTAGCAGGATGGCACCCAGGAACAAGTGGAGGATACATCCATAGCAG---GAGAACAGGA-AAGAGTTTGACCCCAGCAGGACGAAGGGCAGATCAACTCTGT--TAGGGTAAGTGCGTCTGTGCCACC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28050475 342 +  39895921 GGCTGACTTTCTAACCAAGCACTGTGTACTTTGC---------CGACAAGACATAAAAGGACCCCTCCTCCCCCCAGACCCCGCTCCATGCAAGTGCTCTTGGGAGAGATCCGCTTT----ATTAGGTGCATCTGAGTCAAGCCTGGTTTGGAGGAAGAGCTAGTAGGTGGAGACTG--AACACCTGGCTCAGATCAGGTAGGGGATGTGAGATAGAAGGGCTTCCTTTTTGGGGCTGTGGGGTGAAGCACAGCGAGGGTGGGAGGACATGCATGTAGCA----GAAAGCAGGCTAAGAGTCTGAGCCCAACAGAA-AGGGGACAGAT-AGCTCTGTAAGAGAGGAAGTGCCTATGTGCCACC
i canFam3.chr31             I 212 I 404
e mm10.chr16                 91563591 1987 +  98207768 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=547650.000000
s hg38.chr21_GL383581v2_alt     33954 314 +    116689 CC--------Atttatttatttagagacacagtctcaccctgttgcccaggctggagcgcagtggcacaatctcacttcactgcaacctctgccttccgggttcaagcgatttttgtgcctcagcctccagagtagctgggattacagatgtgcgccaccacacccagctaatttttgtatttttagtagagatggggt----ttcactatgttggtcaggctggtctcaaactcctgacctcaggtgatccgctcacctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcccagccTTAAATAGTATTTTCTG
s panTro4.chr21              19537661 314 +  32799110 CC--------Atttatttatttagagacagagtctcaccctgttgcccaggctggagcacagtggcacaatctcacttcactgcaacctctgccttccgggttcaagcgatttttgtgcctcagcctccagagtcgctgggattacagatgtgcgccaccacacccagctaatttttgtatttttagtagagatggggt----ttcactatgttggtcaggctggtctcaaactcctgacctcaggtgatctgctcacctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcccagccTTAAATAGTATTTTCTG
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185135274 322 - 198365852 CCAtttatttatttatttattcagagacagagtctcaccctgttgcccaggctggagcgcagtggcacgatctcagttcactgcaacctccgccttctgggttcaagcaatttttgtgcctcagcctccagagtagctgggattacagatgctcgccaccatgcccggctaatttttgtatttttagtagagatggggt----ttcaccatgttggtcaggctggtctcaagcctctcacctcaggtgatccgcccacctcagcctcccaaagtgctggaattatagatgtgagccactgtgcccagccTTAAATAGTATTTTCTG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178975356 322 - 192294377 CCAtttatttatttatttattcagagacagagtctcaccctgttgcccaggctggagcgcagtggcacgatctcagttcactgcaacctccgccttctgggttcaagcgatttttgtgcctcagcctccagagtagctgggattacagatgctcgccaccatgcccggctaatttttgtatttttagtagagatggggt----ttcaccatgttggtcaggctggtctcaaacctctcacctcaggtgatccgcccacctcagcctcccaaagtgctggaattatagatgtgagccactgtgcccagccTTAAATAGTATTTTCTG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167355807 322 - 180432695 ccatttatttatttatttattcagagacagagtctcaccctgttgcccaggctggagcgcagtggcacgatctcagttcactgcaacctccgccttctgggttcaagcgatttttgtgcctcagcctccagagtagctgggattacagatgctcgccaccatgcccggctaatttttgtatttttagtagagatggggt----ttcaccatgttggtcaggctggtctcaaacctctcacctcaggtgatccgcccacctcagcctcccaaagtgctggaattatagatgtgagccactgtgcccagccttaaatagtattttctg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31632400 318 -  90373283 CC----ATTTATTTATTTATTCACagacacagtctcaccctgttgcccaggctggagcacagtggcacgatctcagttcactgcaacctccgccttccgggttcaagcgatttttgtgcctcagcctccagagtagctgggattacagatgctcgccaccatgcccagctaatttttgtatttttagtagagatggggt----ttcaccatgttggtcaggctggtctcgaacctctcaccccaggtgatccgcccacctcagcctcccaaagtgctgggattatagatgtgagccactgtgcccagccTTAAATAGTATTTTCTG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37435713 311 +  50472720 CC------------Atttatttagcgacagagtctcactctgttgcctaggctagaatacagtggcacgatctcaattcactgcaacctccaccttctgggttcaagcggtttttgagcctcagcctccagagtagctgggattacaggcatgcaccact---tctggttaatctttgtatttttaggagaggtggagtttcattcaccatgttggccaggatggtctcaaactcctgacctcaggtgatatgcccagctcggcctctcaaagtgctgggattacaggtgtgagccactgtccccaaccTTAAATAGTATTTTCTG
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91563591 1987 +  98207768 I
e canFam3.chr31              28050817 404 +  39895921 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=9439.000000
s hg38.chr21_GL383581v2_alt     34268 5 +    116689 AAATG
s panTro4.chr21              19537975 5 +  32799110 AAATG
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185135596 5 - 198365852 AAATG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178975678 5 - 192294377 AAATG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167356129 5 - 180432695 aaatg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31632718 5 -  90373283 AAATG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37436024 5 +  50472720 AAAGG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91565578 5 +  98207768 aaaaa
i mm10.chr16                I 1987 C 0
e canFam3.chr31              28050817 404 +  39895921 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=114135.000000
s hg38.chr21_GL383581v2_alt     34273 47 +    116689 AAATGCCTCATTCTCCTTAGTAAAATAAATGACTAATTGATGGGATT-
s panTro4.chr21              19537980 47 +  32799110 AAATGCCTCATTCTCCTTAGTAAAATAAATGACTAATTGATGGGATT-
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185135601 47 - 198365852 AAATGCCTCATTATCCTTAGTAAAATAAATAACTAATTGATGGGATT-
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178975683 47 - 192294377 AAATGCCTCATTATCCTTAGTAAAATAAATAACTAATTGATGGGATT-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167356134 47 - 180432695 aaatgcctcattatccttagtaaaataaataactaattgATGGGATT-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31632723 47 -  90373283 AAATGCCTCATTATCCTCAGTAAAATAACTGACTAATTGATGGGATT-
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37436029 47 +  50472720 AAATGCCTCATTCTCCTTAGTAAAATAAATGACTCACTGATGGGATT-
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91565583 47 +  98207768 aaatGCTTCGGTCTGCCTTGTAAAATAAACAACTAGCCAGTAGGATT-
i mm10.chr16                C 0 I 1992
s canFam3.chr31              28051221 48 +  39895921 AAACACCTGATTCTACTTTGTAAAATAAATAGCTCATCGATTAGAATT
i canFam3.chr31             I 404 C 0
e ponAbe2.chr21              34433640 1124 +  48394510 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=-1309.000000
s hg38.chr21_GL383581v2_alt     34320 1 +    116689 -A
s panTro4.chr21              19538027 1 +  32799110 -A
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185135648 1 - 198365852 -A
i rheMac3.chr3              C 0 I 1273
s macFas5.chr3              178975730 1 - 192294377 -A
i macFas5.chr3              C 0 I 42
s papAnu2.chr3              167356181 1 - 180432695 -A
i papAnu2.chr3              C 0 I 42
s chlSab2.chr2               31632770 1 -  90373283 -A
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37436076 1 +  50472720 -A
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28051269 1 +  39895921 C-
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=4011.000000
s hg38.chr21_GL383581v2_alt     34321 4 +    116689 GTAT
s panTro4.chr21              19538028 4 +  32799110 GTAT
i panTro4.chr21             C 0 C 0
s macFas5.chr3              178975773 4 - 192294377 ACAT
i macFas5.chr3              I 42 C 0
s papAnu2.chr3              167356224 4 - 180432695 acat
i papAnu2.chr3              I 42 C 0
s chlSab2.chr2               31632771 4 -  90373283 ATAT
i chlSab2.chr2              C 0 I 88
s calJac3.chr21              37436077 4 +  50472720 ATAC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28051270 4 +  39895921 ATAC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=3651.000000
s hg38.chr21_GL383581v2_alt     34325 7 +    116689 TTACACT
s panTro4.chr21              19538032 7 +  32799110 TTACACT
i panTro4.chr21             C 0 C 0
s macFas5.chr3              178975777 7 - 192294377 TTATATC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167356228 7 - 180432695 ttatatc
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37436081 7 +  50472720 GTAGGCT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28051274 7 +  39895921 TTGTACT
i canFam3.chr31             C 0 I 2441
e mm10.chr16                 91565630 1992 +  98207768 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e chlSab2.chr2               31632775 88 -  90373283 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=11691.000000
s hg38.chr21_GL383581v2_alt     34332 21 +    116689 -GTCAA------------ggccaggcgcagtggc
s panTro4.chr21              19538039 22 +  32799110 AGTCAA------------ggccagacgcagtggc
i panTro4.chr21             C 0 C 0
s macFas5.chr3              178975784 34 - 192294377 TTTTAAAATCACATCTCTggccaggcgcggtggc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167356235 34 - 180432695 ttttaaaatcacatctctggccaggtgcggtggc
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37436088 22 +  50472720 AGTCAA------------gaccaggcacagtggc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e chlSab2.chr2               31632775 88 -  90373283 I
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=15084.000000
s hg38.chr21_GL383581v2_alt     34353 78 +    116689 tcacacctgtaatccgagcactttgagaccctgaggtgggtggatca--tgaggtcaggagtttgagacaagcctggtca
s panTro4.chr21              19538061 78 +  32799110 tcacacctgtaatccgagcgctttgggaggctgaggtgggtggatca--tgaggtcaggagtttgagacaagcctggtca
i panTro4.chr21             C 0 C 0
s calJac3.chr21              37436110 80 +  50472720 tcacgcctgcaaccccaacactttggtaggccaaggtgggcagatcacttaaggtgaggaattcaagaccagcctggcca
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e ponAbe2.chr21              34433640 1124 +  48394510 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e chlSab2.chr2               31632775 88 -  90373283 I
e papAnu2.chr3              167356269  0 - 180432695 C
e macFas5.chr3              178975818  0 - 192294377 C
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=85953.000000
s hg38.chr21_GL383581v2_alt     34431 198 +    116689 acatggcgaaaacctgtttctattaaaaatacaaaaattag-ctgggcgtggtggctcacacctgtaatcccagctacttgggaagctgaggcaggagaatcacttgagcccgagaagcggaggttgcagtgagctgacatggcacctctgcactccagcctgggcaacagagcaagactctgtctcaagaa-----aaataaa
s panTro4.chr21              19538139 198 +  32799110 acatggcgaaaacctgtttctattaaaaatacaaaaattag-ctgggcgtggtggctcacacctgtaatcccagctacttgggaagctgaggcaggagaatcacttgagcccaagaagcggaggttgcagtgagctgagatggcacctctgcactccagcctgggcaacagagcaagactctgtctcaagaa-----aaataaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34434764 199 +  48394510 acacggcgaaaacctttttctattaaaaatgcaaaaattagcctgggcgtggtggctcacacctgtaatcccaggtacttgggagggggaggcaggagaatcacttgagcccgagacgcggaggttgcagtgagctgagatggcacctctgcactccagcctgggcaacagagcaagactctgtctcaaaaa-----aaataaa
i ponAbe2.chr21             I 1124 C 0
s calJac3.chr21              37436190 191 +  50472720 ----------accccatttctactaaaaatacaaaaatcag-ctgggcatggtggcacgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggctatagtgagccaagatcgagccattgcactccagcctggatgac--agcaaggctctgtctcaaaaacagacaaacaaa
i calJac3.chr21             C 0 I 6
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e chlSab2.chr2               31632775  88 -  90373283 I
e papAnu2.chr3              167356269   0 - 180432695 C
e macFas5.chr3              178975818   0 - 192294377 C
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=66396.000000
s hg38.chr21_GL383581v2_alt     34629 254 +    116689 GTCAAGCTAAGTACATTGTCAAAATTTTTGAGTTGGAAGCACTCTTATAAATAATCCGTTGACAGGGCATAATCCATAACCTACTTgccaaatcagcccattccctgtttttgtaaaacccgtgtgctaagaatagcttttacatcttggaatagtt------aaagtcaaaagaagaatatttcatcacacatgaaaattctatgatattcaaatttcactgttcataaatatttattagaacccagAAGGTAAgctgc
s panTro4.chr21              19538337 260 +  32799110 GTCAAGCTAAGTACATAGTCAAAATTTTTGAGTTGGAAGCACTCTTATAAATAATCCGTTGACAGGGCATAATCCATAACCTACTTgccaaatcagcccattccctgtttttgtaaaacccgtgtgctaagattagcttttacatcttggaatagttagagaaaaagtcaaaagaagaatatttcatcacacatgaaaattctatgatattcaaatttcactgttcataaatatgtattagaacccagAAGGTAAGCTGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34434963 256 +  48394510 GTCAAGCTAAGTACATAGTCAAAATTTTTGAGTTGGAAGCATTCTTATAAATCATCCGTTGACAGGGCATAATCCATAACCTACTTgccaaatcagcccattccctgtttttgtaaaacccgtgtgctaagaatagcttttacatcttggaatagttagagaaaaagtcaaaagaagaatatttcatcacacatgaaaactgtatgatattcaaatttcactgttcataaa----taTTAGAACCCAGAAGGTAagctgg
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e calJac3.chr21              37436381   6 +  50472720 I
e chlSab2.chr2               31632775  88 -  90373283 I
e papAnu2.chr3              167356269   0 - 180432695 C
e macFas5.chr3              178975818   0 - 192294377 C
e nomLeu3.chr25              19968812 4823 +  32716333 I

a score=3846.000000
s hg38.chr21_GL383581v2_alt     34883 10 +    116689 gtgtagtggt
s panTro4.chr21              19538597 10 +  32799110 ATGTAgtggt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34435219 10 +  48394510 gcgtagtggt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19973635 10 +  32716333 gtgtggtgac
i nomLeu3.chr25             I 4823 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e calJac3.chr21              37436381  6 +  50472720 I
e chlSab2.chr2               31632775 88 -  90373283 I
e papAnu2.chr3              167356269  0 - 180432695 C
e macFas5.chr3              178975818  0 - 192294377 C

a score=4818.000000
s hg38.chr21_GL383581v2_alt     34893 5 +    116689 tcaca
s panTro4.chr21              19538607 5 +  32799110 tcaca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34435229 5 +  48394510 tcaca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19973645 5 +  32716333 tcatg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178975818 5 - 192294377 tcatg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167356269 5 - 180432695 tcatg
i papAnu2.chr3              C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e calJac3.chr21              37436381 6 +  50472720 I
e chlSab2.chr2               31632775 88 -  90373283 I

a score=265222.000000
s hg38.chr21_GL383581v2_alt     34898 171 +    116689 cctgtaatcccagcactttgggaggctgaggtgggcggatcatttgaggccaggagtttgagaccagcctgaccaacatggtgaaacaccgtctctact---------aaaaa-------tacaaaaattagctgggcatggtggtgcatgcctgtaatcccagctactcaggaggctgagcgaagg
s panTro4.chr21              19538612 171 +  32799110 cctgtaatcccagcactttgggaggctgaggtgggcggatcatttgaggccaggagtttgagaccagcctgaccaacatggtgaaataccatctctact---------aaaaa-------tacaaaaattagctaggcatggtggtgcatgcctgtaatcccagctactcaggaggctgagcgaagg
i panTro4.chr21             C 0 I 569
s ponAbe2.chr21              34435234 171 +  48394510 cctgtaatcccagcactttgggaggccgaggtgggcggatcatttgaggccaggagtttgagaccagcctgaccaacatggtgaaacaccgtctctact---------aaaaa-------tacaaaaattagccgggcatggtggtgcacgcctgtagtcccagctactcaggaggctgagcgaagg
i ponAbe2.chr21             C 0 I 563
s nomLeu3.chr25              19973650 180 +  32716333 cctgtaatcctagcactttgggaggccgaggtgggcggattgcctgagctcaggagtttgagatcagcctgggcaacatggtgaaaccctgtctctactaaaatacaaaaaaa-------aaaaaaaaaaagctgggcatggcgacatgcgcctctagtcccagctactcaggaggctgaggcagga
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178975823 187 - 192294377 cctgtaatcctagcactttgggaggccgaggagggtggattgcctgagctcaggagttcgagaccagcctgggcaacatggtgaaaccctgtctctactaaaatacaaaaaaaaaaaaccaaaaaaaaatagccgggcatggcggcatgcgcctctagtcccagctacttgggagactgaggcagga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167356274 181 - 180432695 cctgtaatcctagcactttgggaggccgaggagggtggattgcctgagctcaggagttcgagaccagcctgggcaacatggtgaaaccctgtctctactaaaatacaaaaaaaa------aaaaaaaaatagccgggcgtggcggcatgcgcctctagtcccagctacttgggagactgaggcagga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31632863 180 -  90373283 cctgtaatcctagcactttgggaggccgaggagggcggattgcctgagctcaggagttcgagaccagtctgggcaacatggtgaaaccccgtctctactaaaatacaaaaaaa-------aaaaaaaaatagccgggcgtggcggcatgcgcctctagtcccaggtacttgggagactgaggcagga
i chlSab2.chr2              I 88 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e calJac3.chr21              37436381   6 +  50472720 I

a score=1292874.000000
s hg38.chr21_GL383581v2_alt     35069 732 +    116689  
s panTro4.chr21              19539352 732 +  32799110  
i panTro4.chr21             I 569 C 0
s ponAbe2.chr21              34435968 735 +  48394510  
i ponAbe2.chr21             I 563 C 0
s nomLeu3.chr25              19973830 743 +  32716333  
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178976010 742 - 192294377  
i macFas5.chr3              C 0 I 7
s papAnu2.chr3              167356455 742 - 180432695  
i papAnu2.chr3              C 0 I 13
s chlSab2.chr2               31633043 740 -  90373283  
i chlSab2.chr2              C 0 I 18
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185135649 1273 - 198365852 I
e calJac3.chr21              37436381   6 +  50472720 I

a score=12740.000000
s hg38.chr21_GL383581v2_alt     35801 5 +    116689 aaaaa
s panTro4.chr21              19540084 5 +  32799110 aaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34436703 5 +  48394510 aaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19974573 5 +  32716333 aaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185136922 5 - 198365852 aaaaa
i rheMac3.chr3              I 1273 C 0
s macFas5.chr3              178976759 5 - 192294377 aaaaa
i macFas5.chr3              I 7 C 0
s papAnu2.chr3              167357210 5 - 180432695 aaaaa
i papAnu2.chr3              I 13 C 0
s chlSab2.chr2               31633801 5 -  90373283 aaaaa
i chlSab2.chr2              I 18 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e calJac3.chr21              37436381 6 +  50472720 I

a score=1346142.000000
s hg38.chr21_GL383581v2_alt     35806 477 +    116689  
s panTro4.chr21              19540089 484 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34436708 475 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19974578 497 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185136927 472 - 198365852  
i rheMac3.chr3              C 0 I 181
s macFas5.chr3              178976764 472 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167357215 470 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31633806 473 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37436387 478 +  50472720  
i calJac3.chr21             I 6 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I

a score=173308.000000
s hg38.chr21_GL383581v2_alt     36283 80 +    116689 gtctgcctcctggattcaagaaattctcctgtctcagcctccttagtagctgggactacaggcatccgccaccatgcctg
s panTro4.chr21              19540573 80 +  32799110 gtctgcctcctggattcaagaaattctcctgtctcagcctccttagtagctgggactacaggcatccgccaccatgcctg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34437183 80 +  48394510 ctctgcctcccggattcaagaaattctcctgtctcagcctccttagtagatgggactacaggcacccgctaccatgcctg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19975075 80 +  32716333 cgctgcctcccggattcaagaaattctcctgtctcaccctccttagtagctgggactacaggcacccgccaccatgcctg
i nomLeu3.chr25             C 0 M 100
s macFas5.chr3              178977236 80 - 192294377 ctccacttcccagattcaagaaattctcctgtgtcagcctccttagtagctgggactacaggcacccgccaccatgcctg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167357685 80 - 180432695 ctccacttcccagattcaagaaattatcctgtgtcagcctccttagtagctgggactacaggcacccgccaccatgcccg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634279 80 -  90373283 ctccacttcccagattcaagaaattctcctgtgtcagcctccttagtggctgggactacaggcacctgccaccatgcccg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37436865 77 +  50472720 ctctgcctcctggattcaagcaatt---ctgcctcagtctcctgagtagctgagactacagggtcctgccaccatgcctg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185137399 181 - 198365852 I

a score=159549.000000
s hg38.chr21_GL383581v2_alt     36363  99 +    116689 gctaa-ttttttgtatttttagtagagatgggattttgccatgttgcccaggctggtcttgaactcctgacctcaagtgatccacctgcctcaaccttct
s panTro4.chr21              19540653  99 +  32799110 gctaa-ttttttgtatttttagtagagatgggattttgccatgttgcccaggctggtcttgaactcctgacctcaagtgatccacctgcctcaaccttct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34437263  99 +  48394510 gctaa-ttttttgtatttttagtagagatgggattttgccatgttgcccaggctggtcttgaactcctgacctcaagtgatccacctgcctcgaccttct
i ponAbe2.chr21             C 0 C 0
s macFas5.chr3              178977316  99 - 192294377 gctaa-ttttttgtatttttagtagacatgggattttgccatgttgcccaggctggcctcgaactcctgacctcaagagatccacctgcctcggcctccc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167357765  99 - 180432695 gctaa-ttttttgtatttttagtagacatgggattttgccatgttgcccaggctggcctcgaactcctgacctcaagtgatccgcctgcctcggcctccc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634359  99 -  90373283 gctaa-ttttttgtatttttagtagaaagagtgtttcaccatgttagccaggctggtctcgaactcctgacctcaggtgatctgcccgccttggcctccc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37436942 100 +  50472720 gctaatttttttgtatttttagtagagacaggatttcatcatgttgcccagggtggtcttgaacgcttgacctcaagggatccaccctctttagtctccc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e rheMac3.chr3              185137399 181 - 198365852 I
e nomLeu3.chr25              19975155 100 +  32716333 M

a score=101188.000000
s hg38.chr21_GL383581v2_alt     36462 42 +    116689 aaaatgctgggattacaggcatgagccaccacgcccggcctt
s panTro4.chr21              19540752 42 +  32799110 aaaatgctgggattacaggcatgagccaccacgcccggcctt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34437362 42 +  48394510 aaagtgctaggattacaggcatgagccaccacacctggccTT
i ponAbe2.chr21             C 0 I 851
s rheMac3.chr3              185137580 42 - 198365852 aaagtgctgggattacaggcatgagccaccacacctggcctt
i rheMac3.chr3              I 181 C 0
s macFas5.chr3              178977415 42 - 192294377 aaagtgctgggattacaggcatgagccaccacacctggcctt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167357864 42 - 180432695 aaagtgctgggattacaggcatgagccaccacacctggcctt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634458 42 -  90373283 aaagtgctggggttacacgcatgagccaccacacctggcctt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37437042 42 +  50472720 aaagtgctgggattaaaggcatgagccaccgcacctggccgt
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e nomLeu3.chr25              19975155 100 +  32716333 M

a score=68630.000000
s hg38.chr21_GL383581v2_alt     36504 37 +    116689 gtgatcatttttgttatcaagcatttttgcatgagaa
s panTro4.chr21              19540794 37 +  32799110 gtgatcatttttgttatcaagcatttttgcatgagaa
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185137622 37 - 198365852 gtgatcatttttgttatcaagcatttatgcatgagaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178977457 37 - 192294377 gtgatcatttttgttatcaagcatttatgcatgagaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167357906 37 - 180432695 gtgaTCATTTTTGTTATCAAGCATTTATGCATGAGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634500 37 -  90373283 gtgatcatttttgttatcaagcatttatgcatgagaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37437084 37 +  50472720 gtgatcgtttttgttatcaagcatttaagcatgagaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e ponAbe2.chr21              34437404 851 +  48394510 I
e nomLeu3.chr25              19975155 100 +  32716333 M

a score=225924.000000
s hg38.chr21_GL383581v2_alt     36541 115 +    116689 -----tccttcatggccttccccagctctatttgtcagggttttttatttgtttgcttgtttgtttgaagcacaagtgactccattttgattctgacaacttccacaCTATGCAGTCACA
s panTro4.chr21              19540831 115 +  32799110 -----tccttcatggccttccccagctctatttgtcagggttttttgtttgtttgcttgtttgtttgaagcacaagtgactccattttgattctgacaacttccacaCTATGCAGTCACA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19975255 107 +  32716333 -----TCcttcatggccttccccagctctatttgtcagcgttttttgt--------ttgtttgtttgaagcacaagtgactccattttgattctgacaacttccacaCTATGCAGTCACA
i nomLeu3.chr25             M 100 C 0
s rheMac3.chr3              185137659 103 - 198365852 -----tccttcatggccttccccagttctatttgtcagggtttt------------ttgtttgttttaagcacaagtgaatccattttgattctgacaacttccacaCTATGCAGTCACA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178977494 103 - 192294377 -----tccttcatggccttccccagttctatttgtcagggtttt------------ttgtttgttttaagcacaagtgaatccattttgattctgacaacttccacaCTATGCAGTCACA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167357943 103 - 180432695 -----TCCTTCATGGCCTTCCCCAGTTCTATTtgtcagggtttt------------ttgtttgttttaagcacAAGTGAATCCATTTTGATCCTGACAACTTCCACACTATGCAGTCACA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634537 103 -  90373283 -----tccttcatgggcttccccagttctatttgtcagggtttt------------ttgtttgttttaagcacaagtgaatccattttgattctgacaacttacacaCTATGCAGTCACA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37437121 103 +  50472720 tcggtctcttcagggcctcccccagatctatttgtctatttttgt-----------ttgtttgtttt------aagtgattccattttgattctgacaactttcacaCTATGCAGTCACA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28051281 2441 +  39895921 I
e ponAbe2.chr21              34437404 851 +  48394510 I

a score=355106.000000
s hg38.chr21_GL383581v2_alt     36656 136 +    116689 TCTCTGAGGCGCCCAGAG---CCCTTCAAAATATATTTGCTGTTTGCCAAATAGTCTCTATTTGAGATGAGAACATCCCCAGCTGTCCTT-CTGTTTGATGAGAAGTGAGACTCCACCCCAGCAGCTTCCGGAGATGCAG
s panTro4.chr21              19540946 136 +  32799110 TCTCTGAGGCGCCCAGAG---CCCTTCAAAATATATTTGCTGTTTGCCAAATAGTCTCTATTTGAGATGAGAACATCCCCAGCTGTCCTT-CTGTTTGATGAGAAGTGAGACTCCACCCCAGCAGTTTCCGGAGATGCAG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19975362 136 +  32716333 tctctgaggcacccagag---cccttcaaaatatatttgctgtttgccaaatagtctctatttgagatgagaacatccccagctgtcctt-ctgtttggtgagaagtgagactccaccccagcattttcgggagatgcag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185137762 131 - 198365852 TCTCTGAGGCGCCCAGAG---CCCTTCGAAATATATTTGCTGTTTGCCAAATAGTCTCTATT-----TGAGAACATCCCCAGCTGTCCTT-CTGTTTGGTAAGAAGTGAGACTTCACCCCAGCATTTTCTAGAGATGCAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178977597 136 - 192294377 TCTCTGAGGCGCCCAGAG---CCCTTCGAAATATATTTGCTGTTTGCCAAATAGTCTCTATTTGAGATGAGAACATCCCCAGCTGTCCTT-CTGTTTGGTAAGAAGTGAGACTTCACCCCAGCATTTTCTAGAGATGCAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167358046 136 - 180432695 TCTCTGAGGCGCCAAGAG---CCCTTCGAAATATATTTGCTGTTTGCCAAATAGTCTCTATTTGAGATGAGAACATCCCCAGCTGTCCTT-CTGTTTGGTAAGAAGTGAGACTTCACCCCAGCATTCTCTAGAGATGCAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634640 136 -  90373283 TCTCTGAGGCGCCCAGAG---CCCTTCGAAATATATTTGCTGTTTGCCAAATAGTCTCTATTTGAGATGAGAACATCCCCAGCTGTCCTT-CTGTTTGGTAAGAAGTGAGACTCCATCCCAGCATTTTCCAGAGATGCAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37437224 132 +  50472720 TCTCTGAGGCATCCAGAG---CCCTCCAAAATATATTTGCTGTCTGCCAAATAGTCTC-ATTTGAGATGAGAACATCCCCAGCTG---TG-CTGTTCGGTGAGGCATGAGACTACACCTCAGCATTTTCCAGAGATGCAG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28053722 139 +  39895921 tctatgaggaaccccaaggttcccccccaaatcggtttgctctatgccaaaaagcctctttttcagatgacaacatcccaaacTGTCCTTGCCGTCTGGTG-GGAGTGAGAAGCCAGCCAGGCAGTGCCCCAGGATGCAG
i canFam3.chr31             I 2441 I 117
e mm10.chr16                 91565630 1992 +  98207768 I
e ponAbe2.chr21              34437404 851 +  48394510 I

a score=742130.000000
s hg38.chr21_GL383581v2_alt     36792 302 +    116689 --------------------TCATGCCTCCCCACCCT---TCACTGCCACTCCCA----GCCTCCCTTG--------------------------------AGACTCAAGGACTGTCCCACGGGAATGAAGTGAAAGTGACGTCTTTCTCCTTGTTTCCAGTCTGTGGTGAGGGAAAACAGCTGGCTACGCTTGAGAGGGTATGGAAACTGGTCAGAGTGGTTACTTGGGACCTGGGGCCTCAGAGCCACCCGTTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGC-------------TCTAGGAATGACACCTAGACATTCCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAAATAC
s panTro4.chr21              19541082 302 +  32799110 --------------------TCACGCCTCCCCGCCCT---TCACTGCCACTCCCA----GCCTCCCTTA--------------------------------AGACTCAAGGACTGTCCCACGGGAATGAAGTGAAAGTGACGTCTTTCTCCTTGTTTCCAGTCTGTGGTGAGGGAAAACAGCTGGCTACGCTTGGGAGGGTATGGAAACTGGTCAGAGTGGTTACTTGGGACCTGGGGCCTCAGAGCCACCCATTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGC-------------TCTAGGAATGACACCTAGACATTCCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAAATAC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19975498 315 +  32716333 --------------------tcacGCCTCCCTGCCCT---TTACTGCCGCTCCCA----GCCTCCCTTG--------------------------------AGACTCAAGGACTGTCCCATGGGAATGAAGTGAAAGTGATGTCTTTCTCCTTGTTTCCAGTCTGTGGTGAGGGAAAACAGCTGGCTACGCTTGGGAGGGTATGTAAACTGGTCAGAGTGGGTACTTGAGACCTGGGGCCTCAGAGCCGCCCGTTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGCTCTAGGAAGATGATCTAGGAATGACACCTAGACATTCCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAAATAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185137893 314 - 198365852 --------------------TCACGCCTCCCTGCCCT---TCACTGCTGCTCCCA----GGCTCCCTTG--------------------------------AAACTCAAGGACTGTCCCATGGGAATGAAATGAAAGTGA-GTCTTCCTCCTTGTCTCCAGTCTGTGGGGAGGGAAAACAGCCGGCTACGTTTGGGAGGGTATGGAAACTGGTCAGAGTGGGTACTTGGGACCTGGGGCCGCAGAGCTGCCCGTTGCTAA-GGAGTGGACTCTGGTCAGGGCAA----CTTGCCAATGCTCTAGGAAGATGATCTAGGAACGACACCTAGACATTCCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAGATAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178977733 314 - 192294377 --------------------TCACGCCTCCCTGCCCT---TCACTGCTGCTCCCA----GGCTCCCTTG--------------------------------AAACTCAAGGACTGTCCCATGGGAATGAAATGAAAGTGA-GTCTTCCTCCTTGTCTCCAGTCTGTGGGGAGGGAAAACAGCCGGCTACGCTTGGGAGGGTATGGAAACTGGTCAGAGTGGGTACTTGGGACCTGGGGCCGCAGAGCTGCCCGTTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGCTCTAGGAAGATGATCTAGGAACGACACCTAGACATTCCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAGATAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167358182 314 - 180432695 --------------------TCACGCCTCCCTGCCCT---TCACTGCCGCTCCCA----GGCTCCCTTG--------------------------------AAACTCAAGGACTGTCCCATGGGAATGAAATGAAAGTGA-GTCTTCCTCCTTGTCTCCAGTCTGTGGGGAGGGAAAACAGCCGGCTACGCTTGGGAGGGTATGGAAACTGGTCAGAGTGGGTACTTGGGACCTGGGGCCGCAGAGCTGCCCGTTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGCTCTAGGAAGATGATCTAGGAACGACACCTAGACATTCCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAGATAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31634776 314 -  90373283 --------------------TCACGCCTCCCTGCCCT---TCACTGCCACTCCCA----GGCTCCCTTG--------------------------------AGACGCAAGGACTGTCCCATGGGAATGAAATGAAAGTGA-GTCTTCCTCCTTGTCTCCAGTCTGTGGGGAGGGAAAACAGCCGGCTACGCTTGGGAGGGTATGGAAACTGGTCAGAGTGGGTACTTGGGACCTGGGGCCTCAGAGCTGCCCGTTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGCTCTAGGAAGATGATCTAGGAACGACACCTAGACATTGCTAAAAAATGATAGCCTAAAAA-TTCATCCCATTGTAGAAATAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37437356 293 +  50472720 --------------------TCACACCTCCCCGCCCT---TTGCTGCCACTCCCA----GCCTTCTGTG--------------------------------AGACTCCAGGACTGTCCCATGGGAATGAAGTGAAAGTGATGTGTTCCTCCTTGTTTCCAGTCTGTGGTGAAGGAAATCAGCTGGCTGCGCTTGGGAGGGTATGGAAACCGTTTAGAGTGGGTACTGGGGACCC-GGGCCTCAGAGCTGCCCATTGCTAA-GGAGAGGACTCTGGTCAGGGCAA----CTTGCCAATGCTCTATGAAGATGCTCTAGGAATGACAC----------------------AGCCTAAAAACTTCACCCCAGTGTAGAAGTAC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28053978 351 +  39895921 tcgggctccccgcaatgggactgcttctccctctcctgtgtctctgcctctctcagtgtgtctctcatgaagaaataaatcttaaaaaaaaaAGAAAAAGAAAAAGCAAGGGTTCCCTGATGGGAGCACAGTAGAAGGGATTCCTTCCTCCTCGCTTCTGG-CCAAGGTGAGGGGAGAAGGCCGCCTCCAC-GGGGAGGGCTGGCCAGCTGGTCAGAGTGGGTGCTAGTGCCCTGGGCCCCCACAGCTGATTGTTGCTGCTGGGGAGGGCTCTGGGCAGTGCCAGCTCTTGGCCAGCCCCCCGGGAAGA----CAGGGAGCCGCCC----------------------TGCCTAGAAT-TCCATCCCAGGGTAGAAACAC
i canFam3.chr31             I 117 I 1267
e mm10.chr16                 91565630 1992 +  98207768 I
e ponAbe2.chr21              34437404 851 +  48394510 I

a score=915557.000000
s hg38.chr21_GL383581v2_alt     37094 403 +    116689 AGGCAGCACTAGCTTCTCTGGGCCCCTCAGTTATCAAAAAAAGAGGAGGGAGGCAGACCCTCAGGGTTACTTTACATCCATATACCTAGCTACAACATAAACATCAAATGATATGTggccaggcgcgctggctcatgcctgtaatcccagcactttgggaggcagaggcaggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggagaaaccccgtctctactaaaaatacaaaaattagccaggcatgatggtgcatgcctgtagttccagctactcagtaggttaaggcatgagaatcgcttgaacctgggaggcggaggttgcagtgag-caagatcgtgccactgcactccagcctgggctaacagagagagactctgtctcaaaaa
s panTro4.chr21              19541384 402 +  32799110 AGGCAGCACTAGCTTCTCTGGGCCCCTCAGTTATCAAAAAAAGAGGAGGGAGGCAGACCCTCAGGGTTACTTTACATCCATATACCTAGCTACAACATAAACATCAAATGATATGTggccaggcgcgctggctcacgcctgtaatcccagcactttgggaggcagaggcaggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggagaaaccccatctctactaaaaatacaaaaattagccaggcatgatggtgcatatctgtagttccagctactcagtaggttaaggcatgagaatcgcttgaacctgggaggcggaggttgcagtgag-caagatcgtgccactgcactccagcctgggctaacagagagagactctgtctc-aaaa
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19975813 403 +  32716333 AGGCAGCACTCGCTTCTCTGGGCCCCTCAGTTATCAAAAAAAGAGGAGGGAGGCAGACCCTCAGGGTTACTTTACATTCATATACCTAGCTACAACATAAACATCAAATGATATGTggccaggcgcgctggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggagaaaccccgtctctaccaaaaatacaaaaattagccaggcatggtggtgcacgcctatagttccagctactcgggaggttgaggcatgagaatcgcttgaacctgggaggcggaggttgcagtgag-caagatcgtgccactgcactccagcctgggcgaacagacagagactctgtctcaaaaa
i nomLeu3.chr25             C 0 I 6
s rheMac3.chr3              185138207 403 - 198365852 AGGCAGCATTAGCTTCTCTGGG-CCCTCAGTTATCAGAAAAAGAGGAGGGAGGCAGATCCTCAGGGTTACTTTACATCCATATACCCAGCTACAACATAAACATCAAATGATACGTggccaggcacgctggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcactcgaggtcaggagtttgagaccagcctggccaacatggagaaaccccgtcactcctaaaaatgcaaaaattagccaggcatgatggcgcacgcctgtagctccagctactcaggaggttgaggcataagaattgcttgaacctgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaaacagagagagactccgtctcaaaac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178978047 403 - 192294377 AGGCAGCATTAGCTTCTCTGGG-CCCTCAGTTATCAGAAAAAGAGGAGGGAGGCAGATCCTCAGGGTTACTTTACATCCATATACCCAGCTACAACATAAACATCAAATGATACGTggccaggcacgctggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcactcgaggtcaggagtttgagaccagcctggccaacgtggagaaaccccgtctctgctaaaaatgcaaaaattagccaggcatgatggcgcacgcctgtagctccagctactcaggaggttgaggcataagaattgcttgaacctgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaaacagagagagactctgtctcaaaac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167358496 403 - 180432695 AGGCAGCATTAGCTTCTCTGGG-CCCTCAGTTATCAGAaaaagaggagggaggcagaTCCTCAGGGTTACTTTACATCCATATACCCAGCTACAACATAAACATCAAATGATACGtggccaggcacgctggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcactcgaggtcaggagtttgagaccagcctggccaacagggagaaaccccgtctctgctaaaaatgcacaaattagccaggcatgatggcgcacgcctgtagctccagctactcaggaggttgaggcataagaattgcttgaacctgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaaacagagagagactctgtctcaaaag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31635090 404 -  90373283 AGGCAGCATTAGCTTCTCTGGGCCCCTCAGTTATCAGAAAAAGAGAAGGGAGGCAGATCCTCAGGGTTACTTTACATCCATATACCCAGCTACAACATAAACATCAAATGATATGTggccagctacgctggctcacgcctgtaatcccagcactttgggaggccgaggcaggcatttcactcgaggtcaggagtttgagaccagtctggctaacatggagaaaccccatctctgctaaaaatgcaaaaattagccaggcatggtggcacacgcctgtagctccagctactcaggaggttgaggcataagaattgcttgaacctgggagggagaggttgcagtaagccaagatcgtgccactgcgctccagcctgggcaaacagagagagactctgtctcaaaac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37437649 377 +  50472720 AGGCAGCACTAGCTTCTC---------------------AAAAAGGAGGGAGACAGACCCTTGGGGTTACTTTACATCCATATACCCAGCTACAATAGAAACATTAAATGATATG-ggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaatgccatctctgctaaaaatgctaaaattagccaggcatggtgccacacacctgtagttccaactactcaggaggctgaggcatgagaatcacttgtacctgggagccggaagttgcagtgagccaagattgtgccactgcattccagcttgggtgac---agagagactc--tctcaaaaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e ponAbe2.chr21              34437404 851 +  48394510 I

a score=1706139.000000
s hg38.chr21_GL383581v2_alt     37497 587 +    116689  
s panTro4.chr21              19541786 587 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34438255 588 +  48394510  
i ponAbe2.chr21             I 851 C 0
s nomLeu3.chr25              19976222 590 +  32716333  
i nomLeu3.chr25             I 6 C 0
s rheMac3.chr3              185138610 587 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178978450 587 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167358899 592 - 180432695  
i papAnu2.chr3              C 0 M 1052
s chlSab2.chr2               31635494 586 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37438026 532 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I

a score=1119941.000000
s hg38.chr21_GL383581v2_alt     38084 534 +    116689  
s panTro4.chr21              19542373 545 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34438843 529 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19976812 523 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185139197 527 - 198365852  
i rheMac3.chr3              C 0 M 407
s macFas5.chr3              178979037 527 - 192294377  
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31636080 536 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37438558 510 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e papAnu2.chr3              167359491 1052 - 180432695 M

a score=838227.000000
s hg38.chr21_GL383581v2_alt     38618 490 +    116689 cctgccactacgcctggctaatttttgtattttt-agtagagat-gggatttcaccatgttggccaagctggtcttgaactcctgacctccggtgatccgcccaccttggcctcccaaagcactgaga-tataggcgtgag-caccatgcctggcctctttgtgctatttttataactctcctggtaagtctgatgtaatttcaacataaaaaGTTAATCTCAggctgggcgcagtggctcacgcctgtaatcctagcactttgggaagttgaggtgagcagaccgcttgagctcaggagctccagaccaatctgggcaacatggtgaaaccgtgtctctacaaaaaat-acaattagccaggcatggtggcgtgcgtctgtagtccaagctactcaggagactgaggagagaggatctcttgagcctaggaggcagaggttgcagtgagccgagctcacaccactgcactccagcctgggtgacagagccagac
s panTro4.chr21              19542918 491 +  32799110 cctgccactatgcctggctaatttttgtattttt-agtagagat-gggatttcaccatgttggccaagctggtcttgaactcctgacctccggtgatccgcccaccctggcctcccaaagcactgaga-tataggcgtgagccaccatgcctggcctctttgtgctatttttataactctcctggtaagtctgatgtaatttcaacataaaaaGTTAATCTCAggctgggcgcagtggctcacgcctgtaatcctagcactttgggaggttgaggtgagcagaccgcttgagctcaggagctccagaccaatctgggcaacatggtgaaaccgtgtctctacaaaaaat-acaattagccaggcatggtggcgtgcgtctgtagtccaagctactcaggaggctgaggtgagaggatctcttgagcctaggaggcagaggttgcagtgagccgagctcacaccactgcactccagcctgggtgacagagccagac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34439372 488 +  48394510 cctgccactacgcccggctaatttttgtattttt-agtagagat-gggatttcaccatgttggccaagctggtcttgaactcctgacctccagtgatccgcccaccttggcctcccaaagcactgaga-tataggcgtgagccatcatgcctggcctctttgtgctatttttataactctcctggtaagactgatgtaatttcaacataaaaaGTTAATCTCAggctgggcgcagcggctcacgcctgtaatcctagcactttgggaggctgaggtgagcagatcgcttgagctcaggagctccagaccaatctgggcaacatggtgaaaccgtgtctctacaaaaaat-acaattagccaggcatggtggcat--gtctgtagtccaagctactcaggaggctgaggtgagatgatctcttgagcctaggaggcagaggttgcagtgagccgagctcacaccactgcactccagcctgggtgacagagccaga-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19977335 490 +  32716333 cttgccactacgcccggctaatttttgtattttt-agtagagat-gggatttcaccatgttggccaagctggtcttgaactcctgacctccggtgatccgcccaccttggcctcccaaagcactgagattataggcatgagccaccatgcctggcctctttgtgctatttttataactctcctgctaagtctgatgtaatttcaacataaaaaGTTAATCTCAggctgggtgcagtggctcatgcctgcaatcctagcactttgggaggttgaggtgagcagattgcttgagctc-ggagctccagaccaatctgggcaacacggtgaaaccatgtctttacaaaaaat-acaattagccaggcatggt-gcatgcatctgtagtccaacctactcaggaggctgaggtgagaggatctctagagcctaggaggcggaggttgcagtgagccgagctcacaccactgcattccagcctgggtgacagagccagac
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178979564 492 - 192294377 actgccactacgcctggctaatttttgtagtttt-agtagagat-gagatttcaccatgttggccgagctggtcttgaactcctgatctcaggtgatctgcccaccttggcctcccaaagcactgggattataggcgtgagccaccatgcctggcctctttgtgctatttttgttactctcctggtaagtctgatgtaatttcagcataaaaaGTTAATCTCAggctgggtgcggtggctcatgcctgtaatcctagcactttgggaggttgaggtgagcagatcgcttgagctcaggagctccagaccaatctgggcaacgtggtgaaaccctgtctctacagaaaat-acaattagccaggcgtggaggcatgcgtctgtagtctaagctactcaggaggctgaggtgagaggatctcctgagcctagcagacagaggttgcagtgagccgagctcacaccactgcactccagcctgagtgacagagccagac
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31636616 490 -  90373283 actgccactacacctggctaatttttatagtttt-agtagagat-gagatttcaccatgttggccaagctggtcttaaactcctgatctcaggtgatctgcccaccttggcctcccaaagcaccgggattataggcgtgagccactgtgcctggcctctttgtgctatttttgttactctcct-gtaagtctgatgtaatttcagcataaaaagttaaTCTCAggctgggtgcagtggctcatgcctgtaatcctagcactttgggaggttgaggtgagcagatcgcttgagctcaggagctccagaccaatctgggcaa-atggtgaaaccctgtctctacaaaaaat-acaattagccaggcgtggaggcatacgtctgtagtctaagctactcaggaggctgagatgagaggatctcttgagcctagcaggtagaggttgcagtgagccgagctcacatcactgcactccagcctgagtgacagagccagac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37439068 493 +  50472720 tctgcc-ccatgcccagctaatttttgtatttttcagtagagatgggggtttcactatgttggccaggctggccttgaactcctgacctcaggtgattgacccacctcagcctcccaaggtgctgggattacaggcatgaaccatcgtgcctggcctctttgtgctatttttataattctcctgataagtctgatgttacttcaacataaaaagttaatctCAggctgggcacaggggctcgcacctgtaatcctagtactttgggaggctgaggcgagcagattgcttgagctcaggatctccagaccaa-ctgggcaacacggtgaaaccctgcctctacagaatataacagttagccaggcgtgatggcacacgcctgtagtccaagctactcaggaggccaaggtgagaggatctcttgagcctaggaggcggaggttgcagtgagccgagctcacaccactgcattccagcctgggtgaaagagtgagac
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e rheMac3.chr3              185139724 407 - 198365852 M
e papAnu2.chr3              167359491 1052 - 180432695 M

a score=10525.000000
s hg38.chr21_GL383581v2_alt     39108 8 +    116689 cctgtctc
s panTro4.chr21              19543409 8 +  32799110 cctgtctc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34439860 8 +  48394510 cctgtctc
i ponAbe2.chr21             C 0 I 7
s nomLeu3.chr25              19977825 8 +  32716333 cctgtctc
i nomLeu3.chr25             C 0 I 4
s macFas5.chr3              178980056 8 - 192294377 cctgtctc
i macFas5.chr3              C 0 I 7
s chlSab2.chr2               31637106 8 -  90373283 cctgtcta
i chlSab2.chr2              C 0 I 6
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e rheMac3.chr3              185139724 407 - 198365852 M
e calJac3.chr21              37439561 0 +  50472720 C
e papAnu2.chr3              167359491 1052 - 180432695 M

a score=451432.000000
s hg38.chr21_GL383581v2_alt     39116 247 +    116689 aaaaaaaaaaaaGGTTAATTTCTAAACTCACAACTTCCATGGTGGGAGGGAAGTACACTGATCACACTGAATAATGTTTTTGGCACCAGGAGTAGAAACTGTTGGAGCACAGACCTGTActatagtcccagctactcgggaggctgaggctggagggt--------cacttgagctcaagagttccaggtcgaagtgtgcaatgttcatgcctgtgaaagccactgtactccagcctgggtaaaatagtgagact
s panTro4.chr21              19543417 253 +  32799110 --aaaaaaaaaaGGTTAATTTCTAAACTCACAACTTCCATGGTGGGAGGGAAGTACATTGATCATACTGAATAATGTTTTTGGCACCAGGAGTAGAAACTGTTGGAGTACAGACCTGTActatagtcccagctacttgggaggctgaggctggagggtcacttgagcacttgagctcaagagttccaggtcgaagtgtgcaatgttcatgcctgtgaaagccactgtactccagcctgggtaaaatagtgagact
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34439875 247 +  48394510 aaaaaaaaaaaaGGTTAATTTCTAAACTCTCAACTTCCATGGTGGGAGGGAAGTACATTGATCATACTGAATAATGTTTTTGGCACCAGGAGTAGAAACTGTTGGAGTACAGACCTGTActatagtcccagctacttcgaaggctgaggctggagggt--------cacttgagctcaggagttccaggatgaagcgtgcaatgatcatgcctgtgaaagccactgcactccagcctgggtaaaatagtgagact
i ponAbe2.chr21             I 7 C 0
s nomLeu3.chr25              19977837 247 +  32716333 aaaaaaaaaaaaGGTTAATTTCTAAACTCACAACTTCCATGGTGGGAGGGAAGTACGTTGATCACACTGAATAATGTTTTTGGCACCAGGAGTAGAAACTGTTGGAGTACAGACCTGTActatagtcccagctacttgggaggctgaggctggagggt--------cacttgagctcaggagttccaggtcgaagtgtgcaatgatcatgcctgtgaaagccactgcactccagcctgggtaaaatagtgagact
i nomLeu3.chr25             I 4 C 0
s rheMac3.chr3              185140147 247 - 198365852 AAAAAAAAAAAAAGTTAATTTCTAAACTCCCAACTTCCATGGTGGGAGAGAAGTACATTGATCATACTGAATCATGATTTTGGCACCAGAAGTAGAAACTGTTGGAGTACAGACCTGTActatagtcccagctacttgggaggctgaggctggagggc--------cacttgagctcagcagttccaggtcgaagtgtgcaacgatcatgcctgtgaaagccactgcactccagcctgggtaaaatagtgagact
i rheMac3.chr3              M 407 C 0
s macFas5.chr3              178980071 247 - 192294377 aaaaaaaaaaaaaGTTAATTTCTAAACTCCCAACTTCCATGGTGGGAGAGAAGTACATTGATCATACTGAATCATGATTTTGGCACCAGAAGTAGAAACTGTTGGAGTACAGACCTGTActatagtcccagctacttgggaggctgaggctggagggt--------cacttgagctcagcagttccaggtcgaagtgtgcaacgatcatgcctgtgaaagccactgcactccagcctgggtaaaatagtgagact
i macFas5.chr3              I 7 C 0
s chlSab2.chr2               31637120 246 -  90373283 aaaaaaaaaaaaaGTT-ATTTCTAAACTCCCAACTTCCATAGTGGGAGAGAAGTACATTGATCATACTGAATCATGATTTTGGCACCAGGAGTAGAAACTGTTGGAGTATAGACCTGTGctatagtcccagctacttgggaggctgaggctggagggt--------cacttgagctcagcagttccaggtcgaagtgtgcaatgatcatgcctgtgaaagccactgcactccagcctgggtaaaatagtgagact
i chlSab2.chr2              I 6 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e calJac3.chr21              37439561   0 +  50472720 C
e papAnu2.chr3              167359491 1052 - 180432695 M

a score=17927.000000
s hg38.chr21_GL383581v2_alt     39363 7 +    116689 ccatctc
s panTro4.chr21              19543670 7 +  32799110 ccatctc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440122 7 +  48394510 ccatctc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978084 7 +  32716333 ccatttc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185140394 7 - 198365852 ccatctc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178980318 7 - 192294377 ccatctc
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31637366 7 -  90373283 ccatctc
i chlSab2.chr2              C 0 I 96
s calJac3.chr21              37439561 7 +  50472720 ccatctc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e papAnu2.chr3              167359491 1052 - 180432695 M

a score=-4932.000000
s hg38.chr21_GL383581v2_alt     39370 5 +    116689 ttt-ac
s panTro4.chr21              19543677 6 +  32799110 tttaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440129 5 +  48394510 ttt-ac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978091 5 +  32716333 ttt-ac
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185140401 3 - 198365852 ---gaa
i rheMac3.chr3              C 0 I 71
s macFas5.chr3              178980325 3 - 192294377 ---gaa
i macFas5.chr3              C 0 I 86
s calJac3.chr21              37439568 2 +  50472720 -tt---
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e chlSab2.chr2               31637373 96 -  90373283 I
e papAnu2.chr3              167359491 1052 - 180432695 M

a score=869391.000000
s hg38.chr21_GL383581v2_alt     39375 393 +    116689 aaaaaaaaaaaaaa---------aaagaaagaaaaagaaacaaaagaaaCTGCTggctgggtgcagtggttcatacctgtaatcccagcactttaggaggctgaggtaggcagatcctttgagcccaggagttcgagaccagcctgggtaacatggtgaaaccccatctctacaaaacattaacaattagccaggatgtagtggcatgcac-------ctgagctacttggaaggctgaggtgggaggatcgcttgagcctgggaggtggagggtgacagag--tgagacccagtctc---aaaaaa--------aaaaa---------------------aaaaaaaC--CAGAAACTGCTGCTGGAAAAGAGCACAATTTACATCCTTTTTGGAGAGCTCTCTGGTTTTATGTCTAGACCTCTGGGGTGGGGAAGAGGTCAAC
s panTro4.chr21              19543683 400 +  32799110 aaaaaaaaaaaaaaaaaaaaaaGAAAGAAAGGAAAAGAAACAAAAGAAACTGCTggctgggtgcagtggttcatacctgtaatcccagcactttaggaggctgaggtaggcagatcctttgagcccaggagttcgagaccagcctgggtaacatggtgaaaccccatctctacaaaacattaacaattagccaggatgtagtggcatgcac-------ctgagctacttggaaggctgtggtgggaggatcgcttgagcctgggaggcggagggtgacagag--tgagacccagtctc---aaaaaa--------aaaaa---------------------aaaaaa----cagaaaCTGCTGCTGGAAAAGAGCACAATTTACATCCTTTTTGGAGAGCTCTCTGGTTTTATGTCTAGACCTCTGGGGTGGGGAAGAGGTCAAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440134 400 +  48394510 aaaaaaaaaaaaaa-----------------agaaagaaaGAAAAGAAACTGCTggctgggtgcggtggctcatacctgtaatcccagcattttaggaggctgaggtaggcagatcctttgagcctaggagttcgagaccagcctgggtaacatggtgaaatcccatctctacaaaacattaacaattagccaggatgtagtggcaggcacctgtagtctgagctacttggaaggctgaggtgggaggatcacttgagcctgggaggcagagggtgacagag--tgagacccagtctc---aaaaaacaaaaaacaaaaa---------------------acaaaaaa--caGAAATTGCTGCTGGAAAAGAGCACAATTTACATCCTTTTTGGAGAGCTCTCTGGTTTTATGTCTAGACCTCTGGGGTGGGGAAGAGGTCAAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978096 386 +  32716333 aaaaaaagaaaaag-----------------------aaagaaaagaaaCTGCTggctgggtgcagtggctcatacctgtaatcccagcactttaggaggctgaggtaggcagatcctttgagcccaggagttcgagaccagcctgggtaacatggtgaaaccccaactctacaaaacattaacaattagccaggatgtagtggcatgcacctgtagtctgagctacttggaaggctgaggtgggacgatcgcttgagcctgggaggtggagggtg--agag--tgagACCTAGTCTC---aaaaaa--------aaaaa---------------------aaaaaaaCCACAGAAACTGCTGCTGGAAAAGAGCACAATTTACATCCTTTTTGGAGAGCTCTCTGGTTTTATGTCTAGACCTCTGGGGTGGGGAAGAGGTCAAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185140475 425 - 198365852 aaagaaaagaaaga---------aaagaaaagaaagaaaagaaaataaaCTGCTggctgggtgcagtggctcatacctgtaatcccagcactttaggaggctgaggtaggcagatcctttgagcccaggagttcgagaccagcctgggtaacatggtgaaaccccatctttacaaaacattaacaattagccaggatgtagtggcatgaacctgtagtctgagctacttggaaggctgaggtgggaggattgcttgagcctgggaggcggagggtgacagagtctgagacccagtctc---aaaaaa--------aaaaaacccaaaaaacaaaacaaacaaAAAAAAACCCAGAAACTGCTGCTGGAAAAGAGCACAATTTACATCCTTTTTGGAGAGCTCTCTGGTTTTATGTCTAGACCTCTGGGGTGGGGAAGAGGTCAAC
i rheMac3.chr3              I 71 C 0
s macFas5.chr3              178980414 424 - 192294377 aaagaaaagaaaga---------aaagaaaagaaagaaaagaaaataaaCTGCTggctgggtgcagtggctcatacctgtaatcccagcactttaggaggctgaggtaggcagatcctttgagcccaggagttcgagaccagcctgggtaacatggtgaaaccccatctttacaaaacattaacaattagccaggatgtagtggcatgaacctgtagtctgagctacttggaaggctgaggtgggaggattgcttgagcctgggaggcggagggtgACAGAGTCTGAGACCCAGTCTC---aaaaaa--------aaaaaacccaaaaaacaaaacaaac-aaaaaaaaCCCAGAAACTGCTGCTGGAAAAGAGCACAATTTACATCCTTTCTGGAGAGCTCTCTGGTTTTATGTCTAGACCTCTGGGGTGGGGAAGAGGTCAAC
i macFas5.chr3              I 86 C 0
s papAnu2.chr3              167360557 427 - 180432695 aaaagaaagaaagg---------aaagaaaagaaagaaaagaaaataaactgctggctgggtgcagtggctcatacctgtaatcccagcactttaggaggctgaggtaggcagatcctttgagcccaggagttcgagaccagcctgggtaacatggtgaaaccccatctttacaaaacattAACAATTAGCCAggatgtagtggcatgcacctgtagtctgagctacttggaaggctgaggtgggaggattgcttgagcctgggaggcggagggtgacAGAGtctgagacccagtctcaaaaaaaaa--------aaaaaacccaaaaaacaaaacaaac-aaaaaaaacccagaaactgCTGCTGGAAAAGAGCACAATTTACATCCTTTTTGGAGAGCTCTCTGGTTTTATGTCTAGAACTCTGGGGTGGGGAAGAGGTCAAC
i papAnu2.chr3              M 1052 C 0
s calJac3.chr21              37439570 377 +  50472720 ---------------------------aaaaaaagagagagaaaagaaaCTGCTggctgggtgcagtggctcacgcctataatcccagcactttgggaggctgaggtcagcagatcccttgagcccaggagttcgagaccaccctgggcagcatggtgaaa-cccgtctctgcagaacattaacagttagccaggctgtagtggcatgcgtctgtagtctgagctacttggaaggctgaggtgggaagatcgtttgatcctgggaggcagagggtgacacag--tgagacc--gtCTC---CAAAAA--------ATGAA---------------------AAGTAA----AAGTAACTGCTGCTGGAAAACAGCACAATTTACACCCTTTTTGGAGAGCTCTCTGGTTTTACATCTAGACCCCTGGGGTGAGAAGGAGGTCAAG
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28054329 1267 +  39895921 I
e chlSab2.chr2               31637373  96 -  90373283 I

a score=294635.000000
s hg38.chr21_GL383581v2_alt     39768 118 +    116689 ATGCTCCCCAAATCAAAGA-CCCAGCACTCTCTACACTGGCATAATCCATGAGGGTCTAGGCAGCCTGTCC------TGCCATACTTACTCAAAGAAATTTAAAATATCCTATCTGCCACAGCTG
s panTro4.chr21              19544083 118 +  32799110 ATGCTCCCCAAATCAAAGA-CCCAGCGCTCTCTACACTGGCATAATCCATGAGGGTCTAGGCAGCCTGTCC------TGCCATACTTACTCAAAGAAATTTAAAATATCCTATCTGCCACAGCTG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440534 118 +  48394510 ATGCTCCCCAAATCAAAGA-CCCAGCGCTGTCTACACTGGCATAATCCATGAGGGTCTAGGCAGCCTGTCC------TACCATATTTACTCAAAGAAATTTAAAATATCCTATCTGCCACAGCTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978482 114 +  32716333 ATGCTCCCCAAATCAAAGA-CCCAGCGCTCTCTAGGCTGGCATAATCCACGAGGGTCTAGGCAGCCTGTCC------TGCCATACTT----AAAGAAATTTAAAATATCGTATCTGCCACAGCTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185140900 119 - 198365852 ATGCTCCCCAAATCAAAGACCCCAGCGCTCTCTACACTGGCATAATCCATGAGGGTCTAGGCAGCCTGTCC------TGCCATACTTACTCAAACAAATTTAAAATATCCTATTTGCCGCAGCTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178980838 119 - 192294377 ATGCTCCCCAAATCAAAGACCCCAGCGCTCTCTACACTGGCATAATCCATGAGGGTCTAGGCAGCCTGTCC------TGCCATACTTACTCAAACAAATTTAAAATATCCTATTTGCCGCAGCTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167360984 119 - 180432695 ATGCTCCCCAAATCAAAGACCCCAGCGCTCTCTACACTGGCATAATCCATGAGGGTCTAGGCAGCCTGTCC------TGCCATACttactcaaaaaaatttaaaatatcctatTTGCCGCAGCTA
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37439947 118 +  50472720 ATGCTCCCCAAATCAAAGA-CCCAATGCTGTCTACACTGGCATAAACCACAAGGGTCTAGACAGTCTGTCC------TGCCATACTTACTCGAATAAATTTAAAATGTCCTATTTGCCACAGCTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28055596 100 +  39895921 ATGCT-CCCAAATCAGAGA--CTGGTGCTTG------TGGCATAATCCACGAGTGTCTGGAAGGCCTGCCCTCCCCTTGCTGCACCTACTTGTAGAAATTTAAAATACT----------------
i canFam3.chr31             I 1267 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e chlSab2.chr2               31637373  96 -  90373283 I

a score=11716.000000
s hg38.chr21_GL383581v2_alt     39886 4 +    116689 AAAG
s panTro4.chr21              19544201 4 +  32799110 AAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440652 4 +  48394510 TAAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978596 4 +  32716333 AAAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141019 4 - 198365852 AAAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178980957 4 - 192294377 AAAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361103 4 - 180432695 AAAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637469 4 -  90373283 aaag
i chlSab2.chr2              I 96 C 0
s calJac3.chr21              37440065 4 +  50472720 AAAG
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91565630 1992 +  98207768 I
e canFam3.chr31              28055696 0 +  39895921 C

a score=53326.000000
s hg38.chr21_GL383581v2_alt     39890 12 +    116689 AATTGAAGAGGC
s panTro4.chr21              19544205 12 +  32799110 AATTGAAGAGGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440656 12 +  48394510 AATTGAAGAGGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978600 12 +  32716333 AATTGAAGAGGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141023 12 - 198365852 AATTGAAGAGGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178980961 12 - 192294377 AATTGAAGAGGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361107 12 - 180432695 AATTGAAGAGGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637473 12 -  90373283 aaTTGAAGAGGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37440069 12 +  50472720 AAATGAAGAGgc
i calJac3.chr21             C 0 I 252
s mm10.chr16                 91567622 12 +  98207768 AACTCAAGAGGC
i mm10.chr16                I 1992 C 0
s canFam3.chr31              28055696 10 +  39895921 --TTGAAGAGGT
i canFam3.chr31             C 0 C 0

a score=221501.000000
s hg38.chr21_GL383581v2_alt     39902 78 +    116689 ATTTACTGCTATC-C-AAAACCCTAAGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAATGCTC---TGGCAGGCT
s panTro4.chr21              19544217 78 +  32799110 ATTTACTGCTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAATGCTC---TGGCAGGCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440668 78 +  48394510 ATTTACTGCTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAAAGCTC---TGGCATGCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978612 78 +  32716333 ACTTACTGCTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAAAGCTC---TGGCAGGCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141035 78 - 198365852 ATTTACTGTTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAAACCTC---TGGCAGGCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178980973 78 - 192294377 ATTTACTGTTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAAACCTC---TGGCAGGCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361119 78 - 180432695 ATTTACTGTTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACaaaaaaaaCCTC---TGGCAGGCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637485 78 -  90373283 ATTTACTGTTATC-C-AAAACCCTACGTAAAATTACTTAAGCTGTGATAAAAGTGCTACAAAAAAAACCTC---TGGCAGGCT
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91567634 74 +  98207768 GCGTGCTTCTATCTT-AAAGCCCCAGGGAGAACATTTCAAACT-TCAGGACAGTGCTATAAAAGGAGG-------GGCGGGCT
i mm10.chr16                C 0 I 5908
s canFam3.chr31              28055706 82 +  39895921 ATAGATTACCATC-TGAAAACCCTATGTAAAGTGGCACAAGCTGTGTGAAAACTGTTACAAAAAGATAGGCAGGGGGCAGGCT
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37440081 252 +  50472720 I

a score=5900.000000
s hg38.chr21_GL383581v2_alt     39980 2 +    116689 CT
s panTro4.chr21              19544295 2 +  32799110 CT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440746 2 +  48394510 CT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978690 2 +  32716333 CT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141113 2 - 198365852 CT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178981051 2 - 192294377 CT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361197 2 - 180432695 CT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637563 2 -  90373283 CT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28055788 2 +  39895921 CC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e calJac3.chr21              37440081 252 +  50472720 I

a score=310103.000000
s hg38.chr21_GL383581v2_alt     39982 100 +    116689 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATCAGATGAGAAAGGAAACA----TCCCTTCAA---AAGTCATC
s panTro4.chr21              19544297 100 +  32799110 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATCAGATGAGAAAGGAAACA----TCCCTTCAA---AAGTCATC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440748 100 +  48394510 --------------------------------------AACCCTGGAAGT----CT---TGTTTTCCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATCAGATGAGAAAGAAAACA----TCCCTTCAA---AAGTCATC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978692 100 +  32716333 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATCAGATGAGAAAGGAAATA----TCCCTTCTA---AAGTCATC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141115  95 - 198365852 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATCAGATGAGAAAGGAAACA----TCCCTTCAA--------GTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178981053  95 - 192294377 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATCAGATGAGAAAGGAAACA----TCCCTTCAA--------GTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361199  95 - 180432695 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAGTCATcagatgagaaaggaaaca----tcccTTCAA--------GTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637565  92 -  90373283 --------------------------------------AAACTTGGAAGT----CT---TGTTTTTCTTAGC-ATGGCATGCCACCTTGTGGCAAAAAGCTAAAAAG---TCAGATGAGAAAGGAAACA----TCCCTTCAA--------GTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37440333 104 +  50472720 --------------------------------------agaCTTGGAAGTCTTGCT---TGTTTTTCTTAGC-ATGGCACGCCACCTTGTGGCAAAAAGGTAAAAAGTCATCAGATGAGGAAGGAAACA----TCCCTTCGA---AAGTCATC
i calJac3.chr21             I 252 C 0
s canFam3.chr31              28055790 149 +  39895921 aaacaaaacaaaacaaaacaaaacaaaacaaaacgaaaaAGCAAGGGACT----CCGGACGTTTTTCTTTACGGTGGCACGCCACCTTGTGCCAAGAGGCTAAACAGCTCTCGAAAGAGGAAGGAAACGTCCTTCCCTTCAGGCAAAGCCATC
i canFam3.chr31             C 0 I 404
e mm10.chr16                 91567708 5908 +  98207768 I

a score=44695.000000
s hg38.chr21_GL383581v2_alt     40082 17 +    116689 --------ATAAGAAATgccgggca
s panTro4.chr21              19544397 17 +  32799110 --------ATGAGAAATgccgggca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440848 17 +  48394510 --------TTAAGAAATgccaggcg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978792 17 +  32716333 --------ATAAGAAATgccgggcg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141210 17 - 198365852 --------ATAAGAAATgccaggca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178981148 17 - 192294377 --------ATAAGAAATgccaggca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361294 17 - 180432695 --------ATAAGAAATGCCAGGCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637657 17 -  90373283 --------ATAAGAAATgctgggcg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37440437 25 +  50472720 AGGAGAAAATGAAAAATgccgggct
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28055939 404 +  39895921 I

a score=795805.000000
s hg38.chr21_GL383581v2_alt     40099 339 +    116689 cggcgcctgtaattccctgcactttgggaggccaaggctggcggatcgcttga---ggttagaagttcgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaacaattagccaggcgtggtggcatgtgcctacaatcccagttacttgggaggccaaggcacgagaatggcttgaacccaggaggctgaggctgcagtgagccactgcactccagcctggatgaca----gagtgagactctgtctc----------aaaaaaaaaaggaaaaaaaaaGCCTACTTGTGTGAATCACTTATTATTTCCAGGAACTTTGTTAAGCATTTCCTCAGATT
s panTro4.chr21              19544414 341 +  32799110 cggcgcctgtaattccctgcactttgggaggccaaggctggcggatcgcttga---ggttagaagttcgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaacaattagccaggcatggtggcatgtgcctacaatcccagttacttgggaggccaaggcacgagaatggcttgaacccaggaggctgaggctgcagtgagccactacactccagcctggatgaca----gagtgaga--ctgtctc------aaaaaaaaaaaaaaggaaaaaaaaaGCCTACTTGTGTGAATCACTTATTATTTCCAGGAACTTTGTTAAGCATTTCCTCAGATT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34440865 340 +  48394510 cggcgcctataattccctgcactttgggaggccgaggctggcggatcgcttga---ggttagaagttcaagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaacaattagccgggcatggtggcacgtgcctacaatcccagttacttgggaggccaaggcacgagaatggcttgaacccaggaggctgaggttgcagtgagccactgtactccagcctggatgaca----gagtgagactctgtctc---------aaaaaaaaaaggaaaaaaaaaaGCCTACTTGTGTGAATCACTTACTATTTCCAGGAACTATGTTAAGCATTTCCTCAGATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19978809 353 +  32716333 cagcacctgtaattccctgcactttaggaggcccaggctggcggatcgcttga---ggtcagaagtttgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaacaattagccaggcgtggtggcacgtgcctacaatcccagttacttgggaggccaaggcacgagaatggcttgaacccaggaggctgaggttgcagtgagccactgcactccagcctggatgacagagtgagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaggaaaaaaaaAGCCTACTTGTGTGAATCACTTACTATGTCCAGGAACTATGTTAAGCATTTCCTCAGATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141227 334 - 198365852 cggtacctgtaattccctgcactttgggaggctgaggctggcagatctcttga---ggtcagaagttcgagaccagcctggccaacatggcaaacacccatctctactaaaaatacaaaaacaattagctgggcatggtggcacgtgcctataatcccagttacttgggaggccgaggcacgagaatggcttgaacccaggcggctaaggttgcagtgggccactgcactccagcctggatgaca----gagtgaggctctgtctc--------------aaaaaaagaaaaaaaTAGCCTACTTGTGTGGATCACTTACTATTTCCA-GAACTATGTTAAGCATTTCCTCAGatt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178981165 334 - 192294377 cggtacctgtaattccctgcactttgggaggctgaggctggcagatctcttga---ggtcagaagttcgagaccagcctggccaacatggcaaaaacccatctctactaaaaatacaaaaacaattagctgggcatggtggcacgtgcctataatcccagttacttgggaggccgaggcacgagaatggcttgaacccaggaggctaaggttgcagtgggccactgcactccagcctggatgaca----gagtgaggctccgtctc--------------aaaaaaagaaaaaaaTAGCCTACTTGTGTGGATCACTTACTATTTCCA-GAACTATGTTAAGCATTTCCTCAGATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361311 337 - 180432695 CGGTACCTGTAattccctgcactttgggaggctgaggctggcagatctcttgaggtggtcagaagttcgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaacaattagctgggcatggtggcacgtgcctataatcccagttacttgggaggccgaggcacgagaatggcttgaacccaggaggctaaggttgcagtgggccactgcactccaccctggatgaca----gagtgaggctccgtctc--------------aaaaaaagaaaaaaatagcctacTTGTGTGGATCACTTACTATTTCCA-GAACTATGTTAAGCATTTCCTCAGATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31637674 334 -  90373283 cggtacctgtaattccctgcactttgggaggctgaggctggcagatctcttga---ggtcagaagttcgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaacaattagctgggcatggtggcacgtgcctataatcccagttacttgggaggccgaggcacgagaatggcttgaacccaggaggctaaggttgcagtgggccactacactccagccttgatgaca----gagtgaggctccgtctc--------------aaaaaaagaaaaaaaTAGCCTACTTGTGTGGATCACTTACTATTTCCA-GAACTATATTAAGCATTTCCTCAGATT
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28055939 404 +  39895921 I
e calJac3.chr21              37440462   0 +  50472720 C

a score=909803.000000
s hg38.chr21_GL383581v2_alt     40438 352 +    116689 AATTCTCAAACATACTTAcagacagggaaacagtcttgcagtcaaatagctaataaatggcagtgccagaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCATAGGCCTCCGAGAATCCCAGCGCCCAAACCACAACTGTCTAGTAACAACGCAATTGGAAGAATTCTTCCTACTGTGCCCTCCTGCCACCATTTTTATTCCCCATAATCAGGCTGGCCACAGGCTTTTCCCAAAGCCAGCCATGCCCACACCTAAACATTTTCCTCTCCTTTTGTTAATTCCCTGTGTTCTATCTA---TTCTAAAGCCACCATAGCAGCACTTTCCCCAAATTACAttttt---
s panTro4.chr21              19544755 352 +  32799110 AATTCTCAAACATACTTAcagacagggaaacagtcttgcagtcaaatagctaataagtggcagtgccagaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCACAGGCCTCCGAGAAACCCAGCGCCCAAACCACAACTATCTAGTAACAACGCAATTGGAAGAATTCTTCCTACTGTGCCCTCCTGCCACCATTTTTATTCCCCATAATCAGGCTGGCCACAGGCTTTTCCCAAAGCCAGCCATGCCCACACCTAAACATTTTCCTCTCCTTTTGTTAATTCCCTGTGTTCTATCTA---TTCTAAAGCCACCATAGCAGCACTTTCCCCAAATTACATTTTT---
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34441205 349 +  48394510 AATTCTCAAACATACTTAcagacagggaaacagtcttgcagtcaaatagctaataagtggcagtgccagaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCATAGGCCTCCAAGAATCCCAGCGCCCAAACCAGAATTGTCTAGTAGCAACGCAATTGGAAGAATTCTTCCTACTGTGCCCTCCTGCCACCATTTTTATTCCCCATAATCAGGCTGGCCACAGGCTTTTCCCAAAGCCAGCCATGCCCACACCTAAACATTTTCCTCTCCTTTTGTTAATTCCCTGTGTTCTATCTA---TTCTAAAGCCACCAAAGCAGCAGTTTCCCCAAATTACAtt------
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19979162 349 +  32716333 GATTCTCAAACATACTTACAGACAGGGAAACAGTCTTGCAgtcaaatagctaataagtggcagtgccagaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCATAGGCCTCCAAGAATCCCAGCGCCCAAACCGGAATTGTCTAGTAACAACGCAATTGGAAGAATTCTTCCTGCTGTGCCCTCCTGCCACCGTTTTTATTCCCCATAATCAGGCTGGCCACAGCCTTTTCCCAAAGCCAGCCATGCCCACACCTAAACATTTTCCTCTCCTTTTGTTAATTCCCTGTGTTCTATCTA---TTCTAAAGCCACCATAGCAGCAGTTTCCCCAAATTACAtt------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141561 340 - 198365852 aattct----catacttacagacagggaaacagtcttgcagtcacatagctaataagtggcagtgccagaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCATAGGCCTCCAAGAATCCCAGCGCCCAAACCAGAATCGTCTAGTAACAACGCAACTGGAAGAATTCTTCCTACTGTGCCCTCCTCCCACCATTTTTATTCCACATAATCAAGCTGGCCACAGGCTTTTCCCAAAGTCAGCCATGCCCACACCTAAACATTTTCCTCTCC-TTTGTTAATTCCCTGTGT----TCTA---TTCTAAAGCCACCATAGCAGCAGTTTCTCCAAATTACAtt------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178981499 340 - 192294377 AATTCT----CATACTTACAGACAGGGAAACAGTCTTGCAgtcacatagctaataagtggcagtgccagaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCATAGGCCTCCAAGAATCCCAGCGCCCAAACCAGAATCGTCTAGTAACAACGCAACTGGAAGAATTCTTCCTACTGTGCCCTCCTCCCACCATTTTTATTCCACATAATCAAGCTGGCCACAGGCTTTTCCCAAAGTCAGCCATGCCCACACCTAAACATTTTCCTCTCC-TTTGTTAATTCCCTGTGT----TCTA---TTCTAAAGCCACCATAGCAGCAGTTTCCCCAAATTACAtt------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361648 339 - 180432695 AATTCT----CATACTTACAGACAGGGAAACAGTCTTGcagtcacatagctaataagtggcagTGCCAGAATAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAAT-CATAGGCCTCCAAGAATCCCAGCGCCCAAACCAGAATCGTCTAGTAACAACGCAACTGGAAGAATTCTTCCTACTGTGCCCTCCTCCCACCATTTTTATTCCACATAATCAAGCTGGCCACAGGCTTTTCCCAAAGTCAGCCATGCCCACACCTAAACATTTTCCTCTCC-TTTGTTAATTCCCTGTGT----TCTA---TTCTAAAGCCACCATAGCAGCAGTTTCcccaaattacatt------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31638008 340 -  90373283 AATTCT----CATACTTacagacagggaaacagtcttgcagtcacatagctaataagtggcagtgccggaatAAGGGAATAAGGGAGAAGTAAACCAACCTAAACTTAAATCCATAGGCCTCCAAGAATCCCAGCGCCCAAACCAGAATCGTCTAGTAACAACGCAACTGGAAGAATTCTTCCTACTGTGCCCTCCTCCCACCATTTTTATTCCACATAATCAAGCTGGCCACAGGCTTTTCCCAAAATCAGCCATGCCCACACCTAAACATTTTCCTCTCC-TTTGTTAATTCCCTGTGT----TCTA---TTCTAAAGCCACCATAGCAGCAGTTTCCCCAAATTACAtt------
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28056343 339 +  39895921 AATCCTCA--AACACCTCCAGATGGGCAAACAGCCTTGGGATCACAGAGCGAATACGTGGTGGGGCCA--------GGTCTAGGGATGAGT-AACCAACCTAAATATAAATGAATGGTTCCCCACGAAGCCCAACCCCAAAACCAGAAATCTCTAGGAAGAGTCCCATGTGAAGTATCCCTCCTCCT-TTCTCTGTGCCCAAAATTTTTATCCTCCAT-GTCAGGCCAGCCGATGGCTTTTCCCGAGGCCC-CAGCATCCACACTGGAGC--TCCCCTCTCCCCTTGAGGACTTCCCTGGTTCCATCTGTTCTTCTAAAGCCACCATCACAGCAGTTTCTCCAAATTTTCTT---TCT
i canFam3.chr31             I 404 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e calJac3.chr21              37440462   0 +  50472720 C

a score=601003.000000
s hg38.chr21_GL383581v2_alt     40790 273 +    116689 cttttattttttttattttttattt---tttatttttttttgagac--agtcttgctctgttgcccacactggagtacagtggcttgatctgagctcactgcagcctctgcctcctgggctcaagcaattctcctgcctcagcatcccaagtagctgggattacaggcatgtaccaccatacttggctaattttttgtatttttagtagagatgggtttcactatgttggccaggctgatctcgaactcctgacctcaagtaatctgcccgcctcgga
s panTro4.chr21              19545107 267 +  32799110 CTtttattt------tttttttttt---cttattttttttttagac--agtcttgctctgttgcccacactggagtacagtggcttgatctcagctcactgcagcctctgcctcctgggctcaagcaattctcctgcctcagcatcccaagtagctgggattacaggcatgcaccaccatacttggctaattttttgtatttttagtagagatgggtttcaccatgttggccaggctgatctcgaactcctgacctcaagtaatctgcccacctcgga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34441554 260 +  48394510 ---------------tttttttttt---tttttttttttttgagacagagtcttgctctgttgcccacactggagtacagtggcttgatctcagctcactgcagcctctgcctcctgggcttaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcgccaccatacttggctaattttttgtatttttagtagagatgggtttcaccatgttagccaggctgatctcgaactcctgacctcaagtaatctgcccgcctcgga
i ponAbe2.chr21             C 0 I 358
s nomLeu3.chr25              19979511 249 +  32716333 ---------------ttt--------------cttttttttgagacagagtcttgctctcttgcccacactggagtacagtggcttgatctcagctcactgcagcctctgcctcctgggctcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcgccaccatacttggctaattttttgtatttttagtagagacaggtttcaccatgttggccaggatgatctcgaactcctgacctcaagtaatctgcccgcctcgga
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185141901 263 - 198365852 ---------------tttcatttttgcttttttttttttttgaaacagagtcttgctctttttcccacactggagtgcagtggtgtgatctcagctcactgcagcctctgcctcctgggttcaagcaattctcctgcctcagccttccgagtagctgggattacaggcatgtgccaccacacttagctaattttctgtatttttagtagagacgggtttcaccatgttggccaggctgatctcgaattcctgacctcaagtaatctgcacgcctcggc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178981839 263 - 192294377 ---------------tttcttttttgcttttttttttttttgaaacagagtcttgctctgttgcccacactggagtgcagtggtgtgatctcagctcactgcagcctctgcctcctgggttcaagcaattctcctgcctcagccttccgagtagctgggattacaggcatgtgccaccacacttagctaattttctgtatttttagtagagacgggtttcaccatgttggccaggctgatctcgaattcctgacctcaagtaatctgcccgcctcggc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167361987 263 - 180432695 ---------------tttcttttttgcttttttttttttttgaaacagagtcttgctctgttgcccacactggagtgcagtggtgtgatctcagctcactgcagcctctgcctcctgggttcaagcaattctcctgcctcagccttccaagtagctgggattacaggcatgtgccaccacacttagctaattttttgtatttttagtagagacgggtttcaccatgttggccaggctgatctcaagttcctgacctcaagtaatctgcccgcctcggc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31638348 262 -  90373283 ---------------tttcttttttgc-tttttttttttttgaaacagagtcttgctctgttgcccacactggagtacagtggcgtgatctcagctcactgcagcctctgcctcctgggttcaagcaattctcctgcctcagccttccaagtagctgggattacaggcatgtgccaccacacttagctaattttctgtatttttagtagagacgggtttcaccatgttggccaggctgatctcaaattcctgacctcaagtaatctgcctgcctcagc
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28056682   0 +  39895921 C
e calJac3.chr21              37440462   0 +  50472720 C

a score=114565.000000
s hg38.chr21_GL383581v2_alt     41063 60 +    116689 ctcccaaagtactgggagtacaggcgagagccgctgtgcctggccCCAAATTACATTTTT
s panTro4.chr21              19545374 60 +  32799110 ctcccaaagtactgggagtacaggcgagagccgctgtgcctggccCCAAATTACATTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34442172 60 +  48394510 ctcccaaagtactgggagtacaggcgagagccgctgtgcctggccCCAAATTACATTTTT
i ponAbe2.chr21             I 358 C 0
s nomLeu3.chr25              19979760 60 +  32716333 ctcccaaagtactgggagtagaagtgagggccgctgtgcctggccCCAAATTACATTTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185142164 46 - 198365852 ctcccaaagtactgggagtacag--------------gcctgGCCCCAAATTACATTTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178982102 46 - 192294377 ctcccaaagtactgggagtacag--------------gcctgGCCCCAAATTACATTTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167362250 46 - 180432695 ctcccaaagtactgggagtacAG--------------GCCTGGCCCCAAATTACATTTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31638610 46 -  90373283 ctcccaaagtactgggagtacag--------------gcctgGCCCCAAATTACATTTTT
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28056682  0 +  39895921 C
e calJac3.chr21              37440462  0 +  50472720 C

a score=255084.000000
s hg38.chr21_GL383581v2_alt     41123 90 +    116689 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAGTAATAGAAAACACCATATAATTGACACCCTCCTCCTAAAGacatacaatacacac---
s panTro4.chr21              19545434 90 +  32799110 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAGTAAtagaaaacaccatataattgacaccttcctcctaaagacatacaatacacac---
i panTro4.chr21             C 0 I 6
s ponAbe2.chr21              34442232 90 +  48394510 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAGTAATAGAAAACACCATATAACTGACCCCTTCCTCCTAAAGACACACAATACACAC---
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19979820 90 +  32716333 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAGTAACAGAAAACACCATATAATTGACACCTTCCTCCTAAAGACATACAATACACAC---
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185142210 90 - 198365852 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAATAATAGAAAACACCATATAATTGACACCTTCTTCCTAAAGACATACAATGCACAC---
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178982148 90 - 192294377 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAATAATAGAAAACACCATATAATTGACACCTTCTTCCTAAAGACATACAATGCACAC---
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167362296 90 - 180432695 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAATAATAGAAAACACCATATAATTGACACCTTCTTCCTAAAGACATACAATGCACAC---
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31638656 90 -  90373283 CAACATGTTCCAGGAGATAAATTTCCAAGTCTCAATAATAGAAAACACCATATAATTGACACCTTTTTCCTAAAGACATACAATGCACAC---
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28056682 89 +  39895921 CAAGGTGTTCTAGGACACAAATTTCCAAGTCTCGAGTATGGA----ACCATCAAACTGACACCTCTCTCCTCAAAACATGCAATTCATATTTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e calJac3.chr21              37440462  0 +  50472720 C

a score=-1039.000000
s hg38.chr21_GL383581v2_alt     41213 27 +    116689 acacacacaca---cacaaaaaaaaaaaaa
s ponAbe2.chr21              34442322 24 +  48394510 TTaaaaaaaaa------aaaaaaaaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19979910  7 +  32716333 -----------------------TTaaaaa
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28056771 26 +  39895921 ----ATACAAGGCTTTTAAGAAGAAAAAAA
i canFam3.chr31             C 0 I 3950
e mm10.chr16                 91567708 5908 +  98207768 I
e rheMac3.chr3              185142300  0 - 198365852 C
e calJac3.chr21              37440462  0 +  50472720 C
e chlSab2.chr2               31638746  0 -  90373283 C
e papAnu2.chr3              167362386  0 - 180432695 C
e macFas5.chr3              178982238  0 - 192294377 C
e panTro4.chr21              19545524  6 +  32799110 I

a score=284407.000000
s hg38.chr21_GL383581v2_alt     41240 174 +    116689 aaaaaaaaaaCCTCTAAGAAAGAAAAGAACTTTACAGAATTTT---AAAA---AGGTGTTTTGGAgcctagtgtggtgatttgcacctctagtcccagctactcaggaggctgaggcaggaggatcacttgagctcaggaattcaagaccagcctgggcaacatag-caagacccctctct
s ponAbe2.chr21              34442346 174 +  48394510 aaaaaaaaaaaCTCTAAGAAAGAAAAGAACTTTACAGAATTTT---AAAA---AGGTGTTTTGGAgcctagtgtggtggcttgcacctctagtcccagctactcaggaggctgaggcaggaggatcacttgagctcaggaattcaagaccagcctgggcaatataa-caagacccctctct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19979917 174 +  32716333 aaaaaaaaaaactctaagaaagaaaagaaCTTTACAGAATTTT---TAAA---ACGTGTTTTCAAgccgagtgtggtggcctgcacctctagtcccagctactcaggaggctgaggcaggaggatcacttgagctcaggaattcaagaccagcctggacaatatag-caagacccctctct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185142300 170 - 198365852 -TTCAAAAAAACTCT----AAGGAAAGAACTTTACAGAATTTT---AAAA---AGGTGTTTTGGggcctagtgtggtggtttgcacctctagtcccagctattcaggaggctgaggcaggaggatcacttgagctcaggagttcaaggccagcctgggcaatacagccaagatggctctct
i rheMac3.chr3              C 0 I 1
s macFas5.chr3              178982238 170 - 192294377 -TTCAAAAAAACTCT----AAGGAAAGAACTTTACAGAATTTT---AAAA---AGGTGTTTTGGGgcctagtgtggtggtttgcacctctagtcccagctattcaggaggctgaggcaggaggatcacttgagctcaggagttcaaggccagcctgggcaatacagccaagatggctctct
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167362386 176 - 180432695 -TTCaaaaaaaCTCT----AAGAAAAGAACTTTAcagaatttttacaaaatacaggTGTTTTGGGGCCTAGTGTGGTGGtttgcacctctagtcccagctattcagaaggctgaggcaggaggatcacttgagctcaggagttcaaggccagcctgggcaatacagccaAGATggctctct
i papAnu2.chr3              C 0 I 2
s chlSab2.chr2               31638746 170 -  90373283 -TTCAAAAAAACTCT----AAGAAAAGAACTTTACAGAATTTT---AAAA---AGGTGTTTTGGGgcctagtgtggtggcttgcacctctagtcccagctattcaggaggctgaggcaggaggatcacttaagctcaggagttcaaggccagcctgggcaatacagccaagacggctctct
i chlSab2.chr2              C 0 I 2
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28056797 3950 +  39895921 I
e calJac3.chr21              37440462   0 +  50472720 C
e panTro4.chr21              19545524   6 +  32799110 I

a score=67600.000000
s hg38.chr21_GL383581v2_alt     41414 28 +    116689 aaaaaagaCTAAGCAAGAAggcggggcg
s panTro4.chr21              19545530 28 +  32799110 aaaaaaaactaagcaagaaggcggggcg
i panTro4.chr21             I 6 C 0
s ponAbe2.chr21              34442520 28 +  48394510 aaaaaagaCTAAGCAAGAAggcggggca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19980091 28 +  32716333 aaaaaagaCTAAGCAAGAAggcggggcg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185142471 28 - 198365852 aaaaaaaACTAAGCAAGAAGGTGgggtg
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              178982409 28 - 192294377 aaaaaaaaCTAAGCAAGAAGGTGgggtg
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167362564 28 - 180432695 aaaaaaaactaagcaagaaggtggggtg
i papAnu2.chr3              I 2 C 0
s chlSab2.chr2               31638918 28 -  90373283 aaaaaaaaCTAAGCAAGAAGGTGgggtg
i chlSab2.chr2              I 2 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28056797 3950 +  39895921 I
e calJac3.chr21              37440462  0 +  50472720 C

a score=1625875.000000
s hg38.chr21_GL383581v2_alt     41442 557 +    116689  
s panTro4.chr21              19545558 571 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34442548 576 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19980119 587 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185142499 555 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178982437 555 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167362592 557 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31638946 557 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37440462 558 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91567708 5908 +  98207768 I
e canFam3.chr31              28056797 3950 +  39895921 I

a score=152730.000000
s hg38.chr21_GL383581v2_alt     41999 46 +    116689 agtaagaca----ctgtaaaaaggactccataaaaaagaacaaTGAAAAC
s panTro4.chr21              19546129 46 +  32799110 agtgagaca----ctgtaaaaaggactccataaaaaagaacaaTGAAAAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443124 46 +  48394510 agtgagaca----ctgtaaaaaggactccataaaaaagaacaatgaaaac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19980706 46 +  32716333 agtcagacg----ctgtaaaaaggactccataaaaaagaacaaTGAAAAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143054 46 - 198365852 agtgagaca----ctgtaaaaaggactccataaaaaagaacaatgaaaAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178982992 46 - 192294377 agtgagaca----ctgtaaaaaggactccataaaaaagaacaatgaaaAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363149 46 - 180432695 agtgAGACA----CTGTAAAAAGGactccataaaaaagaacaatgaaaac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31639503 46 -  90373283 agtgagaca----ctgtaaaaaggactccataaaaaagaacaatgaaaAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37441020 50 +  50472720 agtgagacaatgtctgtaaaaaGGACTCCATAAAAAAGGACAATGAAAAC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28060747 36 +  39895921 aataaaatc----ttttaaaaaG-------TAAGATGGAACAATGAA---
i canFam3.chr31             I 3950 C 0
e mm10.chr16                 91567708 5908 +  98207768 I

a score=560253.000000
s hg38.chr21_GL383581v2_alt     42045 183 +    116689 AAAGACTCCTGAGTTGATGTTGTGACTGAAAACCCT---TCCACTGGGGAAAAATGT--AGAGATCATGAGTTCAATGCACCCATGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCCAAATT-------ATATGGTTTGA---------------------TATCATCAATCT------TTCAGTCTTCCAATTTCATTATGTTGATGCAAATCAATGTC
s panTro4.chr21              19546175 183 +  32799110 AAAGACTCCTGAGTTGATGTTGTGATTGAAAACCCT---TCCACTGGGGAAAAATGT--AGAGATCATGAGTTCAATGCACCCATGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCCAAATT-------ATATGGTTTGA---------------------TATCATCAATCT------TTCAGTCTTCCAGTTTCATTATGTTGATGCAAATCAATGTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443170 183 +  48394510 aaaGGCTCCTGAGTTGATGTTGTGACTGAAAACCCT---TCCATTGGGGAAAAATAT--AGAGATCATGAGTTCAATGAACCCATGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCCAAATT-------ATATGGTTTGA---------------------TATCATCAATCT------TTCCATCTTCCAATTTCAATATGTTGATGCAAATCAATGTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19980752 183 +  32716333 AAAGGCTCCTGAGTTGATGTTGTGACTGAAAACCCT---TCCACTGGGGAAAAATGT--AGAGATCATGAGTTCAATGCACCCATGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCCAAATT-------ATATGGTTTGA---------------------CATCATCAATCT------TTCAGTCTTCCAATTTCATTATGTTGATGCAAATCAATGTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143100 171 - 198365852 AAAGGCTCCTGAGTTAATGTTGTTACTGAAAACCCT---TCCACTAGGGAAAAATGT--AGACATCATGAGTTCAATGCACACGTGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCC-AATT-------ATATGGCTTGA---------------------TATCATCAATCT------TTCAGTCTTCCAATTTCATTATGTTGATG-----------C
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983038 171 - 192294377 AAAGGCTCCTGAGTTAATGTTGTTACTGAAAACCCT---TCCACCAGGGAAAAATGT--AGACATCATGAGTTCAATGCACACGTGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCC-AATT-------ATATGGCTTGA---------------------TATCATCAATCT------TTCAGTCTTCCAATTTCATTATGTTGATG-----------C
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363195 171 - 180432695 aaaggCTCCTGAGTTAATGTTGTTACTGAAAACCCT---TCCACCAGGGAAAAATGT--AGACATCATGAGTTCAATGCACACATGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCC-AATT-------ATATGGCTTGA---------------------TATCATCAATCT------TTCAGTCTTCCAATTTCATTATGTTGATG-----------C
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31639549 182 -  90373283 AAAGCCTCCTGAGTTAACGTTGTTACTGAAAACCCT---TCCACCAGGGAAAAATGT--AGACATCATGAGTTCAATGCACACGTGTCAAACCCTCTGGG---GGCTCTTGCTCAAGGGGCC-AATT-------ATATGGCTTGA---------------------TATCATCAATCT------TTCAGTCTTCcaatttcattatgttgatgcaagtcaatgtc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37441070 171 +  50472720 AAAGGCTCCTGAGTTGATGTTGTGACTGAAAACCCT---TCCACTGAGGAAAAATGTCAAAAAATCTTGAATTTAATGCACCCACGTCAAATCTTCTGGG---GGCTCTTGCTCAAGGAGCCAAACT-------ATATGGTTTGA---------------------TACCATCAATCT------TTCAGTCTTTGAATTTCATT---TTGATG-----------C
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91573616 173 +  98207768 aaagacacataagtataTGTTAC-----ATGACCCTGAATTGACTGG----AAATGC--AGAGAACATAAATTCAACCTGTCCATGGCAAACACTCTTGA---GTTCCCTACTTAAGAGGCCAAGCT-------ATGTGCTTAGA---------------------TATCATCAGCCT------TTCAGCCTTGAAAATTCA----GCTTATGCATATCCGTTTC
i mm10.chr16                I 5908 I 869
s canFam3.chr31              28060783 184 +  39895921 -------GCTGACATGATG--------------------ACCATTGTGGAAAAATGT--TCAGACCCTGAGTTCAA--------TGTCAAACA-TATGGGTGAGGCTCTTGCTCAAGTAGCAAAAATTATGCAAATGTTACTTAATGCAATAATGCAAATGTGACTTAACATCAATCTTTCCAGTTCAACCTTGCTACTTCATTATGTTGATACATATCAAA---
i canFam3.chr31             C 0 C 0

a score=38521.000000
s hg38.chr21_GL383581v2_alt     42228 32 +    116689 AAGTCAACGTCTTGTGTATAGAA---------------ATacacaca
s panTro4.chr21              19546358 32 +  32799110 AAGTCAACGTCTTGTGTATAGAA---------------ATATATaca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443353 47 +  48394510 AAGTCAACGTCTTGTGTATAGAAatatatatatatcatatatataca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19980935 32 +  32716333 AAGTCAACGTCTTGTGtatagaa---------------atatatata
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143271 19 - 198365852 AAGTCAATGTCTTGTGTAT----------------------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983209 19 - 192294377 AAGTCAATGTCTTGTGTAT----------------------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363366 19 - 180432695 AAGTCAATGtcttgtgtat----------------------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31639731 19 -  90373283 aagtcaatgtcTTGTGTAC----------------------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37441241 31 +  50472720 AAGTC-ATGCCTTGTGTATAGAA---------------ATATATATA
i calJac3.chr21             C 0 I 7083
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28060967  0 +  39895921 C

a score=4748.000000
s hg38.chr21_GL383581v2_alt     42260 31 +    116689 cacacacacacacacacacacacaca------------------------------cacac
s panTro4.chr21              19546390 26 +  32799110 cacacacacacacacacacacacaca-----------------------------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443400 61 +  48394510 cacatatatatacacatatacatatatacatatatatacacatatagatatatacacacac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19980967 33 +  32716333 tacacatacacacacacacacacaca----------------------------cacacac
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143290  9 - 198365852 -----------------ATACACACA-----------------------------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983228  9 - 192294377 -----------------ATACACACA-----------------------------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363385  9 - 180432695 -----------------atacacaca-----------------------------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31639750  9 -  90373283 -----------------ATACACACA-----------------------------------
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28060967  0 +  39895921 C
e calJac3.chr21              37441272 7083 +  50472720 I

a score=608410.000000
s hg38.chr21_GL383581v2_alt     42291 186 +    116689 aTATATATATATACTG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGGAATACAAGGATCTTAGA------GCAATAA-AATGGAATACTCTGATAATATTGGTCCACACA-------CAAAAAACACTCAGATTCAATGACCACTGAATCTATGTGACAGCTTGAGAACCT--TAGTAAGGGAATCA
s panTro4.chr21              19546416 181 +  32799110 -----tatacatacTG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGGAATACAAGGATCTTAGA------GCAAGAA-AATGGAATACTCTGATAATATTGGTCCACACA-------CAAAAAACACTCAGATTCAATGACCACTGAATCTATGTGACAGCTTGAGAACCT--TAGTAAGGGAATCA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443461 186 +  48394510 acacatatatataCTG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGGAATACAAGGATCTTAGA------GCAATAA-AATGGAATACTCTGATAATATTGGTCCACACA-------CAAAAAACACTCAGATTCAATGACCACTGAATCTATGTGACAGCTTGAGAACTT--TAGTAAGGGAATCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981000 186 +  32716333 acacaTATATATACTG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGACAACAGCACAAGGAATACAAAGATCTTGGA------GCAATAA-AATGGAATACTCTGATAATATTGGTCCACACA-------CAAAAAACACTCAGATTCAATGACCACTGAATCTATGTGACAGCTTGAGAACTT--TAGTAAGGGAATCA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143299 181 - 198365852 -----TATATATAATG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGAAATACAAGGATCTTAGA------GCAATAA-AATGGAATACTCTGATAATACTGGTCCACACA-------CAAAAGACACTCAGATTCAATGACCACTGAACCTATGTGACAGCTTGAGAACTT--TAGTAAGAGAATCA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983237 181 - 192294377 -----TATATATAATG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGAAATACAAGGATCTTAGA------GCAATAA-AATGGAATACTCTGATAATACTGGTCCACACA-------CAAAAGACACTCAGATTCAATGACCACTGAACCTATGTGACAGCTTGAGAACTT--TAGTAAGAGAATCA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363394 180 - 180432695 -----catatataatg-gaAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGAAATACAAGGATCTTAGa------gcaataa-aatggaatactCTGATAATATAGGTCCACACA-------C-AAAGACACTCAGATTCAATGACCACTGAACCTATGTGACAGCTTGAGAACTT--TAGTAAGAGAATCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31639759 181 -  90373283 -----TACATATAATG-GAAAAATACAGCCTCTGGG-TTTTTACTCAGTGGCAACAGCACAAGAAATACAAGGATCTTAGA------GCAATAA-AATGGAATACTCCGATAATATTGGTCCACACA-------CAAAAGACACTCAGATTCAATGACCACTGAACCTATGTGACAGCTTGAGAACTT--TAGTAAGAGAATCA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37448355 189 +  50472720 atatatatatataATGAAAAAAATATAGCATCTGGGTTTTTTACTCATTGGCAACAGCACAAGGAATACAAGGATCTTAGA------AAGAGAGCAGTAAAATATTCTGATAATATTGGTCCACACA-------CAAAAGACACTCAGATTCAATGACAACTGAACCTATGTGACAGCTTGAGAACTT--TAGTAAGGGAATGA
i calJac3.chr21             I 7083 C 0
s canFam3.chr31              28060967 191 +  39895921 ----ATTTATATAATA-GAAACATTTAGACTGT----TTTTTTCATAGTGGCAACACCACTAGGAATACCAGGATCTAAGAAGCAGTATAATAA-AACAGAATGCTTTGGTAATGCTGGTCTACCTAAAAACACCAAAAGACACTCAAATTC-ACAGCCATTGAACCTGTGTAACAG--GGAGAACTTTCTATTAAGGGAAACC
i canFam3.chr31             C 0 I 204
e mm10.chr16                 91573789 869 +  98207768 I

a score=246137.000000
s hg38.chr21_GL383581v2_alt     42477 76 +    116689 CATGCATTTGTAGATGATTACCAAAGATTCTGCC----CTAACTCATAATATTTCTAAGAGTGGATACTAACATTATCTC
s panTro4.chr21              19546597 76 +  32799110 TATGCATTTGTAGATGATTACCAAAGATTCTGCC----CTAACTCATAATATTTCTAAGAGTGGATACTAACATTATCTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443647 76 +  48394510 CATGCATTTGTAGATGATTACCAAAGATTCTGCC----CTAACTCATAATATTTCTAAGAGCGGATACCAACATTATCTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981186 76 +  32716333 CATGCATTTGTAGATGATTACCAAAGATTCTGCC----CTAACTCATAATATTTCTAAGAGTGGATACTAACATTATCTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143480 80 - 198365852 CATGCATTTGTAGATGATTAACAAAGatgctgtcctttctaactcacaatatttctaagagtggatactaataTTATCTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983418 80 - 192294377 CATGCATTTGTAGATGATTACCAAAGATGCTGTCCTTTCTAACTCACAATATTTCTAAGAGTGGATACTAATATTATCTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363574 80 - 180432695 CATGCATTTGTAGATGATTACCAAAGATGCTGTCCTTTCTAACTCACAATATTTCTAAGAGTGGATACTAAtattatctc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31639940 80 -  90373283 CATGCATTTGTAGATGATTACCAAAGATGCTGTCCTTTCTAActcacaatatttctaagagtggatactaatattatctc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37448544 80 +  50472720 CATGCATTTTTAGATGATTACCAAAGATTCTGCTTTTTCTAACTCATAACATTTGTAAGAATGGATACTAACATAATCTC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28061362 72 +  39895921 CATGTATTTTTAGATGATTATAGAGGGCTCCATC----TTTTCTTACAATACCTGTAA----GGGTATGAACATTACCCC
i canFam3.chr31             I 204 I 27
e mm10.chr16                 91573789 869 +  98207768 I

a score=3934.000000
s hg38.chr21_GL383581v2_alt     42553 4 +    116689 tttt
s panTro4.chr21              19546673 4 +  32799110 TTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443723 4 +  48394510 tttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981262 4 +  32716333 TTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143560 2 - 198365852 TT--
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983498 2 - 192294377 TT--
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363654 4 - 180432695 tttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640020 4 -  90373283 tttt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37448624 4 +  50472720 TTTT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434 27 +  39895921 I

a score=747983.000000
s hg38.chr21_GL383581v2_alt     42557 324 +    116689 atgtttttatttattttttattttctagacggagtctcgctttgtcacccaagctggagtgcagttgcacgatcttggctcactgcaacctctgcctcccgggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggggtgcaccaccacgcctggctaatttgttgtatttttagtacagaccgggtttcagtatgttggccaggctggtctcgaactcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattac-----aggcgtgagcccccacgcctgaccACATTATCTCTTTTTTT-
s panTro4.chr21              19546677 325 +  32799110 ACGtttttatttattttttattttttagacggagtctcgctttgtcacccaagctggagtgcagtggcgcaatcttggctcactgcaacctctgcctcccgggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggggtgcaccaccacgcctggctaatttgttgtatttttagtacagaccgggtttcagtatgttggccaggctggtctcgaactcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattac-----aggcgtgagcccccatgcctgaccACATTATCTCTTTTTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34443727 324 +  48394510 atgtttttatttattttttattttttagacggagtctcgctttgtcacccaagctggagtgcagtggcgcaatcttggctcactgcaacctctgcctcccgggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggggtgcactaccacgcctggctaatttgttgtatttttagtagagaccgggtttcagtatgttggccaggctggtctcgaactcctgacctcgtgatctgcctgcctcggcctcccaaagtgttaggattac-----aggcatgagcccccacgcccgaccACATTATCTCTTTTTTT-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981266 313 +  32716333 ACG-----------tttttattttttagacggagtctcgctttgtcacccaggcgggagtgcagtggcgcaatcttggctcactgcaacctctgcctcccaggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggggtgcaccaccacgcctggctaatttgttgtatttttagtagagaccaggtttcagtatgttggccaggctggtctcgaactcctgacctcatgatctgcccgccttggcctcccaaagtgctgggattac-----aggcgtaagcccccacgcccaaccACATTATCTCTTTTTTT-
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143562 319 - 198365852 ----------TTATTATTAAttttttagacagagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgccttccaggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccatgcctgcctaatttgttgtatttttagcagagactgggtttcagtatgttggccaggctggtctcaaactcctgatctcatgatctgcctgccttggcctcccaaagtgctgggattacagtataggcgtgagccccaacgcccaaccACATTATCTCTTTTTTT-
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983500 319 - 192294377 ----------TTATTATTAAttttttagacagagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgccttccaggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccatgcctgcctaatttgttgtatttttagcagagactgggtttcagtatgttggccaggctggtctcaaactcctgatctcatgatctgcctgccttggcctcccaaagtgctgggattacagtataggcgtgagccccaacgcccaaccACATTATCTCTTTTTTT-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363658 321 - 180432695 att------attattattaattttttagac--agtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgccttccaggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggtgtgcaccaccatgcctgcctaatttgttgtatttttagcagagactgggtttcagtatgttggccaggctggtctcaaactcctgatctcatgatctgcctgccttggcctcccaaagtgctgggattacagtacaggcgtgagccccaacGCCCAACcacattatctcttttttt-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640024 323 -  90373283 att------attattatttattttttagacagagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccgccttccaggttcaagcaattctccctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccatgcctgcctaatttgttgtatttttagcagagactgggtttcagtatgttggccaggctggtctcgaactcctgatctcatgatctgcctgccttggcctcccaaagtgctgggattacagtacaggtgtgagccccaacgcccaaccacattatctcttttttt-
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434  27 +  39895921 I
e calJac3.chr21              37448628   0 +  50472720 C

a score=538149.000000
s hg38.chr21_GL383581v2_alt     42881 187 +    116689 AAAATGAAGAAACAGAAAATTAAGTGATTTGCTCACAACTAAAAAACAAATTCAGggttgggtgtggtggctcatgcctgtcaacctagcactttgtgaggttgaggcaggtggatgtgttgagacc---agttcaccca----gaacagcatagtgagacccccgtctctac-aaaaaacaac--------------tttttttttta-
s panTro4.chr21              19547002 187 +  32799110 AAAATGAAGAAACAGAAAATTAAGTGATTTGCGCACAACTAAAAAACAAATTCAGggctgggtgtggtggctcatgcctgtcaacctagcactttgtgaggttgaggcaggtggatgtgttgagacc---agttcaccca----gaacagcatagtgagacccccgtctctac-aaaaaacaac--------------ttttttttttt-
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444051 188 +  48394510 AAAATGAAGAAACAGAAAATTAAGTGATTTGCTCACAACTAAAAAACAAATTCAGggctgggtgtggtggttcatgtctgtcaacctagcactttgtgaggttgaggcaggtggatgtgttgagacc---agttcaccca----gaacagcatagtgagacccccgtctctacaaaaaaacaac--------------ttttttttttt-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981579 187 +  32716333 AAAATGAAGAAACAGAAAATTAAGTGATTTGCTCACAACTAAAAAACAAATTCAGggctgagtgtggtggctcatgcctgtcaacctagcactttgtgaggttgaggcaggtggatgtgttgagacc---agttcaccca----gaacagcatagtgagacccctgtctctac-acaaaacaAC--------------TTTTTTTTTTT-
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185143881 200 - 198365852 AAAATGAGGAAACAGAAAATTAAGTGATTTGCTCACAACTAAAAAACAAATTCAGggctgggcgtggtggctcatgcctgtcatcctagcactttgtgaagttgaggtaggtggatgtgttgagaccaggagttcaccca----gaacagtatagtgagacccccgtctctac-aaaaaacaacttcttgg----tttttttttttttt-
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178983819 204 - 192294377 AAAATGAGGAAACAGAAAATTAAGTGATTTGCTCACAACTAAAAAACAAATTCAGggctgggcgtggtggctcatgcctgtcatcctagcactttgtgaagttgaggtaggtggatgtgttgagaccaggagttcaccca----gaacagtatagtgagacccccgtctctac-aaaaaacaacttcttggtttttttttttttttttt-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167363979 197 - 180432695 aaaatgaggaaacagaaaattaagtgatttgctcacaactaaaaaacaaattcagggctgggcatggtggctcatgcctgtcatcctagcactttgtgaagTTGAGGTAGGTGGATGtgttgagaccaggagttcaccCA----GAACAGTatagcgagacccctgtctctgc-aaaaaacaactttttgg-------ttttttttttt-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640347 198 -  90373283 aaaatgaggaaacagaaaattaagtgatttgctcaCAACTAAAAAACAAATTCAGggctgggcgtggtggctcatgcctgtcatcctagcactttgtgaagttgaggtaggtggat-tgttgagactaggagttcaccca----gaacagtatagtgagacccccgtctctac-aaaaaacaactttttgg-----ttttttttttttt-
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37448628 193 +  50472720 AAAATGAGGAAACAGAAAACTAAGTGATTTGCTCACAGCTAAAAAACAAATTCAGggctgggtgtggtggctcatgccggttaccctagcactttgtgaggctgaagcaggtggatgtgttgaagccaggagttcaaccagcctgaacagcat---gagacccct-tctctac-aaaaatacacat------------ttttttttttta
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434  27 +  39895921 I

a score=28238.000000
s hg38.chr21_GL383581v2_alt     43068 18 +    116689 at----gac----atggagtcttgct
s panTro4.chr21              19547189 22 +  32799110 ctttttgac----atggagtcttgct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444239 21 +  48394510 tt-tttgac----atggagtctcgct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981766 23 +  32716333 TT---TGACATGGATGGAGTCTTGCT
i nomLeu3.chr25             C 0 M 139
s rheMac3.chr3              185144081 22 - 198365852 ttttttgag----atggagtctcact
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178984023 22 - 192294377 ttttttgag----atggagtctcact
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167364176 22 - 180432695 ttttttgag----atggagtctcact
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640545 22 -  90373283 ttttttttt----atggagtctcact
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434 27 +  39895921 I
e calJac3.chr21              37448821  0 +  50472720 C

a score=294293.000000
s hg38.chr21_GL383581v2_alt     43086 166 +    116689 ctgttgcccagactggagtgcagtggcacgattttggctcactgcaagctctgcctccaaggttcacgccattctcttgcctcagcctcccaagtagctgggactacaggtgacccccaccacgcccggctaatttttttgtatttttagtacagacagggtttca
s panTro4.chr21              19547211 166 +  32799110 ctgttgcccaggctggagtgcagtggcacgattttggctcactgcaagctccgcctcccaggttcacgccattctcttgcctcagcctcccaagtagctgagactacaggtgacccccaccacgcccggctaatttttttgtatttttagtacagacagggtttca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444260 166 +  48394510 ctgttgcccaggctggagtgcagtggcacgatttcggctcactgcaagctctgcctcccaggttcacgccattctcttgcctcagcctcccaagtagctgggactacaggcacccaccaccacgcccggctaatatttttgtatttttagtacagacggggtttca
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185144103 166 - 198365852 ctgtcacccaggctggagtacagtggcgcgattttggctcgctgcaagctacgcctcccgggttcacgccattctcttgcctcagccccccaagtagctggaactacaggcactcaccaccacgcccagctaatttttttgtatttttagtagagacggggtttca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178984045 166 - 192294377 ctgtcacccaggctggagtacagtggcgcgattttggctcgctgcaagctacgcctcccgggttcacgccattctcttgcctcagccccccaagtagctggaactacaggcactcaccaccacgcccagctaatttttttgtatttttagtagagacggggtttca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167364198 166 - 180432695 ctgtcacccaggctggagtacagtggcgcgattttggctcgctgcaagctacgcctcccgggttcacgccattctcttgcctcagccccccaagtagctggaactacaggcactcaccaccacgcccagctaatttttttgtatttttagtagagacggggtttca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640567 165 -  90373283 ctgtcacccaggctggagtacagtggcgcgattttggctcgctgcaagctccgcctcccgggttcacactattctcttgcctcagacccccaagtagctggaactacaggcac-caccaccacgcccagctaatttttttgtatttttagtagagacggggtttca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434  27 +  39895921 I
e calJac3.chr21              37448821   0 +  50472720 C
e nomLeu3.chr25              19981789 139 +  32716333 M

a score=151844.000000
s hg38.chr21_GL383581v2_alt     43252 75 +    116689 ccatgttagccaggatggtctcgatctcct-gacctcgtgatccgcccacctaggcctcccaaaacattttttttt-
s panTro4.chr21              19547377 76 +  32799110 ccatgttagccaggatggtctcgatctcct-gacctcgtgatccgcccacctaggcctcccaaaacatttttttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444426 75 +  48394510 ccgtgttagccaggatggtctcaatctcct-gacctcatgatccgcccacctaggcctcccaaaacactttttttt-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981929 67 +  32716333 ccatgttagccaggatggtctcgatctcct-gacctcgtgatccgcccacctaggcctccca--------TTTTTT-
i nomLeu3.chr25             M 139 C 0
s rheMac3.chr3              185144269 74 - 198365852 ctgtgttaatcaggatagtctccatctcctggacctcgtgatccgcccacctcggcctcccaaaacat--tttttt-
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178984211 74 - 192294377 ctgtgttaatcaggatagtctccatctcctggacctcgtgatccgcccacctcggcctcccaaaacat--tttttt-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167364364 74 - 180432695 ccgtgttaatcaggatagtctccatctcctggacctcgtgatccgcccacctcggcctcccaaaacat--tttttt-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640732 74 -  90373283 cagtgttaatcatgatagtctccatctcctggacctcgtgatccgcccacctcggcctcccaaaacat--tttttt-
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434 27 +  39895921 I
e calJac3.chr21              37448821  0 +  50472720 C

a score=344956.000000
s hg38.chr21_GL383581v2_alt     43327 118 +    116689 aattaaccagacataatgacacgtacctgtggtcccagctgcttggaaagcggag---gtaagaggattgcctgagctccagcatttgaaggtgcagtgagctgtggttgcaccactgcac
s panTro4.chr21              19547453 118 +  32799110 aattaaccagacgtgatgacacgtacctgtggtcccagctgcttggaaagcggag---gtaagaggattgcttgagctccagcatttgaaggtgcagtgagctgtggttgcactactgcac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444501 118 +  48394510 aattaactgcgtgtgatgacacgtacctgtggtcccagctgcttggaaagtggag---gtaagaggattgcttgagccccagcatttgaaggtgcagtgagctgtggttgcaccactgcac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19981996 118 +  32716333 aattaaccaggcatgatgacacgtacctgtggtcccagctacttggaaagcagag---gtaagaggattgcttgagccccagcatttgaaggtgcagtgagctgtggttgcatcactgcac
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185144343 118 - 198365852 aattaatcaggcgtgatgacacacacctgtggtcccagctacttggaaagctgag---gtgagaggattgcttgagccctagcgtttgaaggtgcagtgagctgtgattgcaccactgcac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178984285 118 - 192294377 aattaatcaggtgtgatgacacacacctgtggtcccacctacttggaaagctgag---gtgagaggattgcttgagccctagcgtttgaaggtgcagtgagctgtgattgcaccactgcac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167364438 118 - 180432695 aattaatcagGCGTgatgacacacacctgtggtcccagctacttggaaagctgag---gtgagaggattgcttgagccctagcgtttgaaggtgcagtgagctgtgattgcaccactgcac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640806 118 -  90373283 aattaatcaggcgtgatgacacacacctgtggtcccagctacttggaaagcagag---gtgagaggattgcttgagccctagcgtttgaaggtgcagcgagctgtgattgcaccactgcac
i chlSab2.chr2              C 0 I 39
s calJac3.chr21              37448821 121 +  50472720 aattaaccgggcatggtgacatgcacctgcagttccagctacttggaaggtggaggaagtgagagggctgcttgagccctagcgtttgaaggtgtagtgagctgtggttgcactattgcat
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434  27 +  39895921 I

a score=29217.000000
s hg38.chr21_GL383581v2_alt     43445 12 +    116689 tccagcctaggc
s panTro4.chr21              19547571 12 +  32799110 tccagcctaggc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444619 12 +  48394510 tccagcctaggc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19982114 12 +  32716333 tccagcctaggc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185144461 12 - 198365852 tccagcctacgc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178984403 12 - 192294377 tccagcctacgc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167364556 12 - 180432695 tccagcctacgc
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37448942 12 +  50472720 tccagcctaggc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e canFam3.chr31              28061434 27 +  39895921 I
e chlSab2.chr2               31640924 39 -  90373283 I

a score=46439.000000
s hg38.chr21_GL383581v2_alt     43457 22 +    116689 aacagagtgagatattgtcttt----
s panTro4.chr21              19547583 22 +  32799110 aacagagtgagatattgtcttt----
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444631 22 +  48394510 aacagagtgagatattgtcttt----
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19982126 22 +  32716333 aacagagtgagatcttgtcttt----
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185144473 22 - 198365852 aacagagtgagatcttgtcttt----
i rheMac3.chr3              C 0 I 16
s macFas5.chr3              178984415 22 - 192294377 aacagagtgagatcttgtcttt----
i macFas5.chr3              C 0 I 13
s papAnu2.chr3              167364568 22 - 180432695 aacagagtgagatcttgtcttt----
i papAnu2.chr3              C 0 I 17
s calJac3.chr21              37448954 19 +  50472720 a--agagtgagatcttgtctc-----
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28061461 26 +  39895921 AACAGAGGAAGATTGAGTGATTTGCT
i canFam3.chr31             I 27 C 0
e mm10.chr16                 91573789 869 +  98207768 I
e chlSab2.chr2               31640924 39 -  90373283 I

a score=8479.000000
s hg38.chr21_GL383581v2_alt     43479 8 +    116689 -aaaaaaaa
s panTro4.chr21              19547605 8 +  32799110 -aaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444653 8 +  48394510 -aaaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19982148 8 +  32716333 -aaaaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185144511 8 - 198365852 -aaaaaagg
i rheMac3.chr3              I 16 C 0
s macFas5.chr3              178984450 8 - 192294377 -aaaaaagg
i macFas5.chr3              I 13 C 0
s papAnu2.chr3              167364607 8 - 180432695 -aaaaaagg
i papAnu2.chr3              I 17 C 0
s chlSab2.chr2               31640963 8 -  90373283 -aaaaaaGG
i chlSab2.chr2              I 39 C 0
s calJac3.chr21              37448973 2 +  50472720 -------aa
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28061487 8 +  39895921 CACAAGTA-
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91573789 869 +  98207768 I

a score=4477495.000000
s hg38.chr21_GL383581v2_alt     43487 1243 +    116689  
s panTro4.chr21              19547613 1242 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34444661 1248 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19982156 1247 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185144519 1224 - 198365852  
i rheMac3.chr3              C 0 I 374
s macFas5.chr3              178984458 1217 - 192294377  
i macFas5.chr3              C 0 I 2
s papAnu2.chr3              167364615 1221 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31640971 1219 -  90373283  
i chlSab2.chr2              C 0 I 378
s calJac3.chr21              37448975 1233 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91574658 1124 +  98207768  
i mm10.chr16                I 869 C 0
s canFam3.chr31              28061495 1263 +  39895921  
i canFam3.chr31             C 0 C 0

a score=15662.000000
s hg38.chr21_GL383581v2_alt     44730 11 +    116689 TATATTTTTTT
s panTro4.chr21              19548855 11 +  32799110 TATATTTTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34445909 11 +  48394510 TATATTTTTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983403 11 +  32716333 TGTATTTTTTT
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178985677 11 - 192294377 TATATATATAT
i macFas5.chr3              I 2 I 323
s papAnu2.chr3              167365836 11 - 180432695 tatatatatat
i papAnu2.chr3              C 0 I 328
s calJac3.chr21              37450208 10 +  50472720 TATATTTTTT-
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91575782 10 +  98207768 TGTGTATTTT-
i mm10.chr16                C 0 C 0
s canFam3.chr31              28062758 11 +  39895921 TGtattttttt
i canFam3.chr31             C 0 C 0
e rheMac3.chr3              185145743 374 - 198365852 I
e chlSab2.chr2               31642190 378 -  90373283 I

a score=32157.000000
s hg38.chr21_GL383581v2_alt     44741 38 +    116689 GTACATCTTCAGAAATCAGA--TACTG-----AGAGTG---GTCCttc
s panTro4.chr21              19548866 40 +  32799110 GTACATCTTCAGAAATCAGAGATACTG-----AGAGTG---GTCtttc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34445920 40 +  48394510 GTACATCTTCAGAAATTAGAGATACTG-----AGAGTG---GTCtttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983414 40 +  32716333 GTACATCTTCAGAAATTAGAGATACTG-----AGAGTG---GTCtttt
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178986011 43 - 192294377 GTACATCTTCAGAAATCAGAGATACTG-----AGAGAGAGTGGttttt
i macFas5.chr3              I 323 I 5
s papAnu2.chr3              167366175 40 - 180432695 gtaccTCTTCAGAAATCAGAGATACtg-----agagtg---gtttttt
i papAnu2.chr3              I 328 I 5
s calJac3.chr21              37450218 45 +  50472720 GCACATCTTCAGAAATTAGAGCTACTGAGAGAAGAGTG---GTTACtt
i calJac3.chr21             C 0 I 13
s mm10.chr16                 91575792  9 +  98207768 GCACATTTT---------------------------------------
i mm10.chr16                C 0 C 0
s canFam3.chr31              28062769  4 +  39895921 -----tttt---------------------------------------
i canFam3.chr31             C 0 C 0
e rheMac3.chr3              185145743 374 - 198365852 I
e chlSab2.chr2               31642190 378 -  90373283 I

a score=6717.000000
s hg38.chr21_GL383581v2_alt     44779  9 +    116689 tttt--ttttg
s panTro4.chr21              19548906  3 +  32799110 tt--------g
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34445960  7 +  48394510 tt----ttttg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983454 10 +  32716333 ttttc-tttgg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178986059  9 - 192294377 tttt--ttttg
i macFas5.chr3              I 5 C 0
s papAnu2.chr3              167366220  9 - 180432695 tttt--ttttg
i papAnu2.chr3              I 5 C 0
s chlSab2.chr2               31642568  9 -  90373283 tttt--ttttg
i chlSab2.chr2              I 378 C 0
s calJac3.chr21              37450276 11 +  50472720 ttttcgttctg
i calJac3.chr21             I 13 C 0
s canFam3.chr31              28062773  9 +  39895921 tttt--ttttG
i canFam3.chr31             C 0 I 32
e mm10.chr16                 91575801  0 +  98207768 C
e rheMac3.chr3              185145743 374 - 198365852 I

a score=7096.000000
s hg38.chr21_GL383581v2_alt     44788 4 +    116689 agag
s panTro4.chr21              19548909 4 +  32799110 agag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34445967 4 +  48394510 agag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983464 4 +  32716333 agag
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              178986068 4 - 192294377 agac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366229 4 - 180432695 agac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31642577 4 -  90373283 agac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450287 4 +  50472720 agac
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91575801 0 +  98207768 C
e canFam3.chr31              28062782 32 +  39895921 I
e rheMac3.chr3              185145743 374 - 198365852 I

a score=314706.000000
s hg38.chr21_GL383581v2_alt     44792 125 +    116689 ggagttt-cactttctcccc------caggctagagtgcagtggcgcaaactcagctcactacaacctc-----------------tgccccccgggttcaagcgattctcctgcctcagcctcctaggtagttgggattacaggcacc
s panTro4.chr21              19548913 132 +  32799110 ggagttttcactttctagcctgggggcaggctagagcgcagtggcgcaaactcagctcactgcaacctc-----------------tgcccccagggttcaagcgatcctcctgcctcagcctcccaggtagctgggattacaggcacc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34445971 119 +  48394510 gaagttt-cactttgtcccc------caggctagagtgcagtggcgcaaactcagctcactgcaacctc-----------------cgcccc------tcaagcaattctcctgcctcagcctcccgggtagctgggattacaggtacc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983468 124 +  32716333 ggagttt-cactttgtcccc------caggctagagtgcagtggcgcaaactcagctcactgcaacctc-----------------cgcccc-caggttcaagcgattctcctgcctcagcctcccaggtagctgggattacaggcacc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146117 125 - 198365852 ggagttt-cactttgtgccc------caggctagagtgcagtggcacaaactcagctcactgcaacctc-----------------cgtcccctgggttcaagcgattctcctgcctcagcctcctgggtagctgggattacaggcaca
i rheMac3.chr3              I 374 C 0
s macFas5.chr3              178986072 125 - 192294377 agagttt-cactttgtgccc------caggctagagtgcagtggcacaaactcagctcactgcaacctc-----------------cgtcccctgggttcaagcgattctcctgcctcagcctcctgggtagctgggattacaggcaca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366233 125 - 180432695 ggagttt-cactttgtgccc------caggctagagtgcagtggcacaaactcagctcactgcaacctc-----------------cgtcccctgggttcaagcgattctcctgcctcagcctcctgggtagctgggattacaggcaca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31642581 142 -  90373283 ggagttt-cactttgtgccc------taggctagagtgcagtggcacaaactcagctcactgcaacctccgtcccctggattcaagcgtcccctggattcaagcgattctcctgcctcagcctcctgggtagctgggattacaggcaca
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450291 124 +  50472720 agagttt-cactttatcacc------caggctagagtgcagtggtgcaaactcagctcactgcaaattc-----------------cgtccc-agggttccagcaattctcctgcctcagcctcccaggtagctgggattacaggtacc
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91575801  17 +  98207768 ---------------------------------------------------------------------------------------------------CAAAC---------------------------------ATCAGAGATACC
i mm10.chr16                C 0 C 0
e canFam3.chr31              28062782  32 +  39895921 I

a score=456708.000000
s hg38.chr21_GL383581v2_alt     44917 153 +    116689 caccaccatgcctggctaatttttgtatttttagtagatggggtttcgccatgttggccaggctggtctcaaacacttgacctcaagcaatcggcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccagccAGA
s panTro4.chr21              19549045 153 +  32799110 caccaccatgcctggctaatttttgtatttttagtagatggggtttcgccatgttggccaggctggtctcaaacacttgacctcaagcaatcggcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccagccAGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446090 153 +  48394510 caccaccacgcctggctaatttttgtatttttagtagacggggtttcgccgtgttggccaggctggtctcgaacacttgacctcaagcaatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccagccAGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983592 152 +  32716333 caccaccacgcctggctaatttttgtatttttagcagacggggtttcgcaatgttggccaggctggtctcgaacacttgacctcaagcaatctgcccaactcggcctcccaaagtgctgggattacaggc-tgagccaccacgcccagccAGA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146242 153 - 198365852 caccaccacacctggctaatttttgtattttcagtagatggagttgcgccacgttggccaggctggtctcaaactcctgacctcaagcaatccgcctgcctcggcctcccaatgttctgggattacaggcatgagccaccgtgcccagccAGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986197 153 - 192294377 caccaccacacctggctaatttttgtatttttagtagatggagtttcgccacgttggccaggctggtctcaaactcctgacctcaagcaatccgcctgcctcggcctcccaatgttctgggattacaggcatgagccaccgtgcccagccAGA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366358 153 - 180432695 caccaccacacctggctaatttttgtatttttagtagatggagtttcgccacgttggccaggctggtctcaaactcctgacctcaagcaatccgcctgcctcggcctcccaatgttctgggattacaggcatgagccaccgtgcccagccaga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31642723 153 -  90373283 caccaccatacctggctaatttttgtatttttggtagacggagtttcgccatgttggccaggctggtctcaaactcctgacctcaagcaatccgcctgcctcggcctcccaatgttctgggattacaggcatgagccaccgtgcccagccAGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450415 151 +  50472720 caccaccacatccagctaatttttgtatttttagtagacggggttttgctatgttggccaggctggtctcaaa--cctgacctcaggtaatctgcctgtcttggcatcccaaagtgctgggattacaggcatgagtcaccacacccagccAGA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91575818   0 +  98207768 C
e canFam3.chr31              28062782  32 +  39895921 I

a score=-1406.000000
s hg38.chr21_GL383581v2_alt     45070 8 +    116689 GAGACAAG
s panTro4.chr21              19549198 8 +  32799110 GAGACAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446243 7 +  48394510 GAGA-GAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983744 7 +  32716333 GAGA-AAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146395 4 - 198365852 GAGA----
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986350 4 - 192294377 GAGA----
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366511 4 - 180432695 gagA----
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31642876 4 -  90373283 GAGA----
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450566 5 +  50472720 CAGA---A
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91575818 7 +  98207768 AAGA-CAA
i mm10.chr16                C 0 C 0
e canFam3.chr31              28062782 32 +  39895921 I

a score=955826.000000
s hg38.chr21_GL383581v2_alt     45078 251 +    116689 AGTGGTT-ACTTCTAAAATGACAAGATGATGTAACCCTGGCTCAGGGAGTAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGTATTATATACA------TATTAAC-AGTCTATGCAATG---------AAAAATAA-AGAAATTTCATAAAACTATTTCAAAACTCAGAACATAAAAATGTAAAGAAACAAAACATTTAATGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
s panTro4.chr21              19549206 251 +  32799110 AGTGGTT-ACTTCTAAAATGACAAGATGATGTAACCCTGGCTCAGGGAGTAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGTATTATATACA------TATTAAC-AGTCTATGCAATG---------AAAAATAA-AGAAATTTCATAAAACTATTTCAAAACTCAGAACATAAAAATGTAAAGAAACAAAACATTTAATGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446250 251 +  48394510 AGTGGTT-ACTTCTAAAATGACAAGATGATATAACTCTGGCTCAGGGAACAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGTATTATATACA------TATTAAC-AGTCTATGCAATG---------AAAAATAA-AGAAATTTCATAAAACTATTTCAAAACTCAGAACATAAAAATGTAAAGAAACAAAACATTTAATGTACACTCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983751 246 +  32716333 AGTGGTT-ACTTCTAAAATGACAAGATGATATAACCTTGGCTCAGGGAACAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGGATTATATACA------TATTAAC-AGTCTATGCAATG---------AAAAAT------AATTTCATAAAACTATTTCAAAACTCAGAACATAAAAATGTAAAGAAACAAAACATTTAATGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146399 256 - 198365852 -GTGGTT-ACTTCTAAAATGACATGATGATATAACCCTGGCTCAGGGAACAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGTATTATATACATATTAGTATTAAC-AGTCTACGCAATG---------AAAAATAA-AGACGTTTCATAAAACTATTTCAAAACTCGGAACATAAAAATGTAAAGAAACAAAACATTTAGTGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986354 256 - 192294377 -GTGGTT-ACTTCTAAAATGACATGATGATATAACCCTGGCTCAGGGAACAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGTATTATATACATATTAGTATTAAC-AGTCTACGCAATG---------AAAAATAA-AGACGTTTCATAAAACTATTTCAAAACTCGGAACATAAAAATGTAAAGAAACAAAACATTTAGTGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366515 256 - 180432695 -GTGGTT-ACTTCTAAAATGACATGATGATATAACCCTGGCTCAGGGAACAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTcttgtattatatacatattagtATTAAC-AGTCTACGCAATG---------aaaaataa-agacgtttcataaaactatttcaaaactcggaacataaaaatgtaaagaaacaaaacatttagtGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i papAnu2.chr3              C 0 M 50
s chlSab2.chr2               31642880 256 -  90373283 -ATGGTT-ACTTCTAAAATGACATGATGATATAACCCTGGCTCAGGGAACAGATCAAG-TTCTAAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATAGTCTTGTATTATATACATATTAGTATTAAC-AGTCTACGCAATG---------AAAAATAA-AGACGTTTCATAAAACTATTTCAAAACTCGGAACATAAAAATTTAAAGAAACAAAACATTTAGTGTACAATCTACTCCATTTGGCAATGTGTA-------CAG---------AGAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450571 252 +  50472720 AGTGGTT-ACTTCTAAAACAACATGCTGATATAACCCTGGCTCACTGAACAGATCAAG-TTCTGAATC-TCAGGAATAAAAAACTGATACTCATTATCCAATTCATATACTCTTGTATTATATACA------TATTGAC-AGTCTATGCAATG---------AAAAAGAACAGAAATTTCATAAAACTATTTCAAAACCCAGAACATAAAAATATAAAGAAACAAAACATTTAATGTACAATCTACTCCATTTGGCAATGTGTA-------CTG---------AGAG
i calJac3.chr21             C 0 I 2
s mm10.chr16                 91575825 236 +  98207768 AGTATTT-ACCTCT-AAACACCAAGACAGCATAACCCTGGCTCGGGAGCCATACCAA---TCTTAGTC-TTGGGAGTAAAAACCTGAC-TTCAGCGTCATGTATACGTAGTGATATATTATCAACA------TATTAGCTTGCCTAGTCGATG---------AAAAACCA-AGAC-------------------AAACTCAGGGCACAAAACTATGAAGAAATGAAGCCCTGAGCACACAA--CGCTCCATTTGGCAATCTGTA-------ACGTCATATACTGGAG
i mm10.chr16                C 0 C 0
s canFam3.chr31              28062814 270 +  39895921 AATGGTTAACTCTTAAAATGACATGAAGATATAACCCTGGCTCAAGGAATAGATCAAGCTTTTAAGTCTTTAGGAATAAAAAACTGATTCTTATCATCCCATCCATATAGttttatattatataca------tattaac-aatctattaaatgattttttaaaaaaGCAC-AGAAACTTCATCAAACTATTTTAAAACTCAGAGCACAGAAGTGTAAAGAAACAGAACATTTAATGTACAATCTATCCCGTTTGGCAATGTGTAAATCATGTCG---------AGGG
i canFam3.chr31             I 32 C 0

a score=301859.000000
s hg38.chr21_GL383581v2_alt     45329 93 +    116689 ATAAAAAACCTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTTAAGAAGTGATCTCAGGTCCATAGCTCTTCGGTTCTTCCAAATTT
s panTro4.chr21              19549457 93 +  32799110 ATAAAAAACCTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTTAAGAAGTGATCTCAGGTCCATAGCTCTTCGGTTCTTCCAAATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446501 93 +  48394510 ATAAAAAACCTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTTAAGAAGTGATCTCAGGTCCATAGCTCTTCAGTTCTTCCAAATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19983997 90 +  32716333 ATAAAAAACCTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTT---AAGTGATCTCAGGTCCATAGCTCTTCAGTTCTTCCAAATTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146655 93 - 198365852 ATAAAAAACTTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTTAAGAAGTGATCTCAGGTCCATAGCTCTTCAGTTCTTCCAAATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986610 93 - 192294377 ATAAAAAATTTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTTAAGAAGTGATCTCAGGTCCATAGCTCTTCAGTTCTTCCAAATTT
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31643136 93 -  90373283 ATAAAAAACTTATCTACAAACAGAATATAACAAAAGGAAAATGTGACTTAAGAAGTGATCTCAGGTCCATAGCTCTTCAGTTCTTCCAAATTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450825 93 +  50472720 AAAAAAAACTTATCTACAAACAGAATATAACAAAAGGAGAATGTGATTTAAGAAGTGATCTCAGGTCCATAACTCTTCGGTTCTTCCAAATTT
i calJac3.chr21             I 2 C 0
s mm10.chr16                 91576061 84 +  98207768 ----ATAACGGAGCTCGCCATGGAAT---ACAAGAGGAAGGGGTGGTGT--GCGGTGATCTCAGGCCCAGAGCTCTTCAGTTCTTCCAAATTT
i mm10.chr16                C 0 C 0
s canFam3.chr31              28063084 91 +  39895921 -AAGAAAACTTATCTACAAATATAACAAAAGAAAAGGA-AGTGTGCTCTAAGAAGTGCTCTCAGGTCCAAAGCTCTTCAGTTCTTCCAAATTT
i canFam3.chr31             C 0 C 0
e papAnu2.chr3              167366771 50 - 180432695 M

a score=310209.000000
s hg38.chr21_GL383581v2_alt     45422 81 +    116689 GTAGATCAGAGTGCTAGAAAGATAGGAAAACAAATCATGAGG-AAAAAACCGAT-GGAACAAGCAACACAGAATTCATTTTCT
s panTro4.chr21              19549550 81 +  32799110 GTAGATCAGAGTGCTAGAAAGATAGGAAAACAAATCATGAGG-AAAAAACCGAT-GGAACAAGCAACACAGAATTCATTTTCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446594 81 +  48394510 GTAGATCAGAGTGCTAGAAAGATAGGAAAACAAATCATGAGG-AAAAAACCGAT-GGAACAAGCAACACAGAATTCATTTTCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19984087 81 +  32716333 GTAGATCAGAGTGCTAAAAAGATAGGAAAACAAATCATGAGG-AAAAAACCGAT-GGAACAAGCAACACAGAATTCATTTTCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146748 81 - 198365852 GTAGATCAGAGTGCTAGAAAGATAAGAAAACAAATCATGAGG-AAAAAACAGAT-GGAACAAGCAACACAAAATTCATTTTCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986703 81 - 192294377 GTAGATCAGAGTGCTAGAAAGATAGGAAAACAAATCATGAGG-AAAAAACAGAT-GGAACAAGCAACACAAAATTCATTTTCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366821 82 - 180432695 GTAGATCAGAGTGCTAGAAAGATAGGAAAACAAATcatgaggaaaaaaacagat-gGAACAAGcaacacaaaattcattttct
i papAnu2.chr3              M 50 C 0
s chlSab2.chr2               31643229 81 -  90373283 GTAGATCAGAGTACTAGAAAGATAGGAAAACAAATCATGAGG-AAAAAACAGAT-GGAACAAGCAACACAAAATTCATTTTCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450918 78 +  50472720 GTAGATCAGAGTGCTAGAAAGATAGGAAAACAAATCATGAGG-AAAAAACAGAC--GAGCAAGCAACAC--AATTCATTTTCT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91576145 73 +  98207768 GTAGATCAGAGTGCTGGAAAGGGATGGGTA-AAGCTGTGAGA-GACAC--------GAACAAGCACCCCAGAGCTCACCCCCT
i mm10.chr16                C 0 I 998
s canFam3.chr31              28063175 82 +  39895921 GTAGATCAGAGTGCTAGAAAGATATTAAAAGAAATCATGAGG-AAACAGTGCATGGGAATGAGCAACAAAGAAGTCACTTTCT
i canFam3.chr31             C 0 C 0

a score=453025.000000
s hg38.chr21_GL383581v2_alt     45503 128 +    116689 CAATATGCTTTGACAGGTACTTCACTGATTC----CTATCAATTTTAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTTGTAAAGCAGTCTGTTAACTACGATGGCTAAGCATAA
s panTro4.chr21              19549631 128 +  32799110 CAATATGCTTTGACAGGTACTTCACTGATTC----CTATCAATTTTAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTTGTAAAGCAGTCTGTTAACTACAATGGCTGAGCATAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446675 132 +  48394510 CAATATGCTTTGACAGGTACTTCACTGATTCCTTTCTATCAATTTTAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTTGTAAAGCAGTCTGTTAACTACGATGGCTGAGCATAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19984168 132 +  32716333 CAATATGCTTTGACAGGTACTTCACTGATTCCTTTCTATCAATTTTAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTTGTAAAGCAGCCTGTTAACTACGATGGCTGAGCATAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146829 132 - 198365852 CAATATGCTTTGACAGGTACTTCACTGATTCCTTTCTATCAATTTAAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTTGTAAAGCAATCTGTTAACCACGATGGCTGAGCATAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986784 132 - 192294377 CAATATGCTTTGACAGGTACTTCACTGATTCCTTTCTATCAATTTAAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTTGTAAAGCAGTCTGTTAACCACGATGGCTGAGCATAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167366903 132 - 180432695 caataTGCTTTGACAGGTACTTCACTGATTCCTttctatcaatttaaaaaattaaattagacatCATGGCAGTGTTGGTcttaatttgcttattttgtaaAGCAGTCTGTTAACCACGATGGCTGAGCATAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31643310 128 -  90373283 CAATATGCTTTGACAGGTACTTCACTGATTC----CTATCAATTTAAAAAATTAAATTAGACATCATGGCAGTGTTGGTCTTAATTTGCTTATTTGGTAAAGCAGTCTGTTAACTACGATGGCTGAGCATAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37450996 132 +  50472720 CAATATGCTTTGACAGGTACTTCACTGATTCCTTTCTATCaattttttaaattaaattaaaCATCACGGCAATGTTGATCTCAATTTGCTTATTTTGTAAAGCAGTCTGTAAACCATGATGGCTGAGCATAA
i calJac3.chr21             C 0 I 150
s canFam3.chr31              28063257 127 +  39895921 AAGCATGCTTTGACAGGTATCTCCCTGGTTCCTCTGGATCAATTTCTAAAAATAAAG-----ACTGCAGTGGTACTGGTCTGAATGTGCTCATTTTATACAGCAGTTTGTTGGCCTTGATGGCTAAGCTTGG
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I

a score=3253790.000000
s hg38.chr21_GL383581v2_alt     45631 1000 +    116689  
s panTro4.chr21              19549759 1001 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34446807  996 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19984300 1007 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185146961 1011 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178986916 1011 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167367035 1011 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31643438 1015 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37451278  998 +  50472720  
i calJac3.chr21             I 150 C 0
s canFam3.chr31              28063384  897 +  39895921  
i canFam3.chr31             C 0 I 292
e mm10.chr16                 91576218  998 +  98207768 I

a score=231233.000000
s hg38.chr21_GL383581v2_alt     46631 74 +    116689 caaggtttctgttcatccaattgtcatttaagtggattcatctaccaccacaaagtgttgaatctgaacttaa------t
s panTro4.chr21              19550760 80 +  32799110 caaggtttctgttcatccaattgtcatttaagtggattcatctaccaccacaaagtgttgaatctgaacttaaacttaat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34447803 80 +  48394510 caaggtttctgttcatccaattgtcatttaagtggattcatctaccaccacaaagtgttgaatctgaacttaaacttaat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19985307 80 +  32716333 caaggtttctgttcatccaattgccatttaagtggattcatctaccaccacaaagtgttgaatctgaacttaaacttaat
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185147972 80 - 198365852 caaggtttctgttcatccaacagtcatttaagtggattcatctaccaccacaaagcgttgaatctgaccttaaacttaat
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178987927 80 - 192294377 caaggtttctgttcatccaacagtcatttaagtggattcatctaccaccacaaagcgttgaatctgaccttaaacttaat
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167368046 80 - 180432695 CAAGGTTTCTGTTCATCCAACAGTCATTTAAGTGGATTCATCTACCACCACAAAGCGTTGAATCTGACCTTAAACTTAAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31644453 80 -  90373283 caaggtttctgttcatccaacagtcatttaagtggattcatctaccaccacaaagcgttgaatctgaccttaaacttaat
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37452276 74 +  50472720 CAAGGTTTCTATTCATCCAACTGTCATGTATGTGGATTAATCTACCACCACAAAGTGCTGAATTCGAACTTAA------T
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I
e canFam3.chr31              28064281 292 +  39895921 I

a score=2827867.000000
s hg38.chr21_GL383581v2_alt     46705 924 +    116689  
s panTro4.chr21              19550840 924 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34447883 901 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19985387 917 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185148052 931 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178988007 885 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167368126 935 - 180432695  
i papAnu2.chr3              C 0 I 299
s chlSab2.chr2               31644533 933 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37452350 930 +  50472720  
i calJac3.chr21             C 0 I 4
s canFam3.chr31              28064573 871 +  39895921  
i canFam3.chr31             I 292 C 0
e mm10.chr16                 91576218 998 +  98207768 I

a score=6664.000000
s hg38.chr21_GL383581v2_alt     47629 47 +    116689 aattcttcaaagtgacaatagagagattaattttatttatttatgta
s panTro4.chr21              19551764 46 +  32799110 -attcttcaaagtgacaatagagagattaattttatttatttatgta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34448784 47 +  48394510 aattcttcaaagtgacaatggagagattaattttatttatttacgta
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19986304 42 +  32716333 aattcttcaaagtgacaatggagaaatt-attttatttatt----ta
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185148983  3 - 198365852 -----------------------------------ttt---------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178988892  3 - 192294377 -----------------------------------ttt---------
i macFas5.chr3              C 0 C 0
s calJac3.chr21              37453284 41 +  50472720 TATTCTCCAAAGTGACAATGGAGAGACttattttattttat------
i calJac3.chr21             I 4 C 0
s canFam3.chr31              28065444 16 +  39895921 -----------gtgaccataaagatat--------------------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I
e chlSab2.chr2               31645466  0 -  90373283 C
e papAnu2.chr3              167369061 299 - 180432695 I

a score=109332.000000
s hg38.chr21_GL383581v2_alt     47676 45 +    116689 tttatttattttgagatgaag------tctcgctctgttgctcag---------caatgg
s panTro4.chr21              19551810 45 +  32799110 tttatttattttgagatgaag------tctcgctctgttgctcag---------caatgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34448831 45 +  48394510 tttatttattttgagatgaag------tctcgctctgttgctcag---------caatgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19986346 45 +  32716333 tttatttattttgagatgaag------tctcattctgttgctcag---------caatgg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185148986 51 - 198365852 ttttttttttttgagatgaagtcttattctcgttctgttgctcag---------caatgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178988895 51 - 192294377 ttttttttttttgagatgaagtctcattctcgttctgttgctcag---------caatgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167369360 51 - 180432695 ttttttttttttgagatgaagtctcattctcgttctgttgctcag---------caatgg
i papAnu2.chr3              I 299 C 0
s chlSab2.chr2               31645466 51 -  90373283 ttttttttttttgagatgaagtctcattctcgttctgttgctcag---------caatgg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37453325 52 +  50472720 --tttattttttgagctgaag------tctcactctgttgcctaggatggagtacaatgg
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28065460  8 +  39895921 -------------------------------------------aa---------caatag
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I

a score=510558.000000
s hg38.chr21_GL383581v2_alt     47721 173 +    116689 tgtgatctcagctcactgcaacctcagcctcccgggttcaagtgattctctggcctcagccttccgagtagctgggattccaggcatgcaccaccatgcccagctaatgtctgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaactcctgacct
s panTro4.chr21              19551855 173 +  32799110 tgtgatctcagctcactgcaacctcagcctcccgggttcaagtgattctctggcctcagccttccgagtagctgggattccaggcatgcaccaccatgcccagctaatgtctgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34448876 173 +  48394510 tgtgatctcggctcactgcaacctcagcctcccgggttcaagtgattctccggcctcagccttccgagtagctgggattacaggcatgcaccaccatgcccgtctaatgtctgtatttttagtagagatgaggtttccccatgttggccaggctggtctcaaactcctgacct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19986391 173 +  32716333 tgtgatttcggctcactgcaacctcagcctcccgggttcaagtgattctccggcctcagccttccgagtagctgggattacaggcatgtaccaccatgcccagctaatgtctgtatttttagtagagatgaggtctcaccatgttggccaggctggtctcgaactcctgacct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185149037 170 - 198365852 tgcgatcttagctcactgcaacctcagcctcctgggttcaagtgattctccggcctcagccttccaaatagctt---ttaaaaacatgcaccaccatgcccagctaacgtctgtatttttagtagagatgaggtttcaccatgttgcccaggctggtctcgaacgcctgacct
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178988946 170 - 192294377 tgcgatcttagctcactgcaacctcagcctcctgggttcaagtgattctccggcctcagccttccgaatagctg---ttacaagcatgcaccaccatgcccagctaatgtctgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaactcctgacct
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167369411 170 - 180432695 tgcgatcttagctcactgcaacctcagcctcctgggttcaagtgattctccggcctcagccttccgagtagcta---ttacaagcatgcaccaccatgcccagctaatgtctgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcaaactcctgacct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31645517 170 -  90373283 tgcgatcttagctcactgcaacctcagcctcctgggttcaagtgattctctggcctcagccttccgagtagctg---ttacaagcatgcaccaccatgcccagctaacatctgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaactcctgacct
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37453377 172 +  50472720 cacgatcttggctcactacaacctcagcctcctgggttcaagccattctcctgcttcagcctcccaagtagctggaattatagacacgtgccaccacacccagctaacttctgtatttttagtagagatgggatttcacc-tgttggccaggctggtctcgaacccctgacct
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I
e canFam3.chr31              28065468   0 +  39895921 C

a score=192349.000000
s hg38.chr21_GL383581v2_alt     47894 68 +    116689 caagtgatccacccgccttggcctcccaaagtgttgagattacaggtgtgagccaccatgcccagccg
s panTro4.chr21              19552028 68 +  32799110 caagtgatccacccaccttggcctcccaaagtgttgagattataggtgtgagccaccatgcccagccg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34449049 68 +  48394510 caagtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagccg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19986564 68 +  32716333 caagtggtccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagccg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185149207 68 - 198365852 caagtgatccacccgtcctggcctcccaaagtgctgggattgcaggtgtgagccaccatgcccagcag
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178989116 68 - 192294377 caagtgatccacccgtcttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagcag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167369581 68 - 180432695 caagtgatccacccgtcttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagcag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31645687 68 -  90373283 caagtgatccacccgtcttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagcag
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37453549 68 +  50472720 caggtgatccgcccactctggcctcctaaagtgctgggattacaggcatgagccaccatacatggccG
i calJac3.chr21             C 0 I 4
s canFam3.chr31              28065468 10 +  39895921 caagtgtccc----------------------------------------------------------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I

a score=1725251.000000
s hg38.chr21_GL383581v2_alt     47962 686 +    116689  
s panTro4.chr21              19552096 686 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34449117 688 +  48394510  
i ponAbe2.chr21             C 0 I 10
s nomLeu3.chr25              19986632 684 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185149275 687 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178989184 687 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167369649 687 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31645755 687 -  90373283  
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28065478 465 +  39895921  
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I
e calJac3.chr21              37453617   4 +  50472720 I

a score=145242.000000
s hg38.chr21_GL383581v2_alt     48648 101 +    116689 tgggcaacagagcgagaatccag---------ctcaaaaaaaaaaaaaa---aaaaGACATTCATTCTAAAAAGCATAGA--ATGGACTTCATTTTGGGGATA-TTTTAGAAGACT
s panTro4.chr21              19552782  97 +  32799110 taggcaacagagcgagaatccag---------ctcaaaaaaaaaaagaa-------GACATTCATTCTAAAAAGCATAGA--ATGGACTTCATTTTGGGGATA-TTTTAGAAGACT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19987316 103 +  32716333 -tggcaacagagtgagaatccag---------ctcaaaaaaaaaaaaaaaaaaaaaGACATTCATTCTAAAAAGCATAGA--ATGGACTTCATTTTGGGGATA-TTTTAGAAGACT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185149962 103 - 198365852 tgggcaacagagcgagaatccagcccccccgcctcaaaaaaaa-------------GACATTCATTCTAAAAATCATAGAATATGGACTTCATTTGGGGGATATTTTTAGAAGATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178989871 103 - 192294377 tgggcaacagagcgagaatccagcccccccgcctcaaaaaaaa-------------GACATTCATTCTAAAAATCATAGAATATGGACTTCATTTGGGGGATATTTTTAGAAGATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167370336 103 - 180432695 tgggcaacagagcgagaatccagcgcccccgcctcaaaaaaaa-------------gacattcattcTAAAAATCATAGAATATGGACTTCATTTGGGGGATATTTTTAGAAGATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31646442 103 -  90373283 tgggcaacagagcgagaatcCAGCCCCCCCGCCCCAAAAAAAA-------------GACATTCATTCTAAAAATCATAGAATATGGACTTCATTTGGGGGATATTTTTAGAAGACT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28065943  73 +  39895921 --------agagttagatgctta---------accaactaa---------------gccacccag----------gtgccccATGAGCTTTATTTTAGGGTTT-TTTTAGAAGATT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91576218 998 +  98207768 I
e ponAbe2.chr21              34449805  10 +  48394510 I
e calJac3.chr21              37453617   4 +  50472720 I

a score=6152.000000
s hg38.chr21_GL383581v2_alt     48749 2 +    116689 GC
s panTro4.chr21              19552879 2 +  32799110 GC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19987419 2 +  32716333 GC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185150065 2 - 198365852 GC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178989974 2 - 192294377 GC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167370439 2 - 180432695 GC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31646545 2 -  90373283 GC
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91577216 2 +  98207768 GT
i mm10.chr16                I 998 C 0
s canFam3.chr31              28066016 2 +  39895921 GC
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34449805 10 +  48394510 I
e calJac3.chr21              37453617 4 +  50472720 I

a score=263221.000000
s hg38.chr21_GL383581v2_alt     48751 99 +    116689 CCCTAAAAAATACTTTTAATATTGGTTTATTTTTCCACTTACTTTAACTTTTCTTAAAAGGGCATTCAGAAAACAGAATTTCCCAACAGGTTTTGTATA
s panTro4.chr21              19552881 99 +  32799110 CCCTAAAAAATACTTTTAATATTGGTTTATTTTTCCACTTACTTTAACTTTTCTTAAAAGGGCATTCAGAAAACAGAATTTCCCAACAGGTTTTGTATA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34449815 99 +  48394510 CCCTAAAAAATACTTTTAATATTGGTTTATTTTTCCACTTACTTTAACTTTTCTTAAAAAGGCATTCAGAAAACACAATTTCCCAACAGGTTTTGGATA
i ponAbe2.chr21             I 10 C 0
s nomLeu3.chr25              19987421 95 +  32716333 CCCTAAAAAATAGTTTTAATATTGGTTTATTTTTCC----ACTTTAACTTGTCTTAAAAAGGCATTCAGAAAACACAATTTCCCAACAGGTTTTGtata
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185150067 94 - 198365852 TCCTAAAAAATACTTTTAATATTGGTTTATTTTTCCAC-----TTAAGTTTTCTTAAAAAGGCATTCAGAAAACACAATTTCCCAACAGGTTTTGTATA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178989976 94 - 192294377 TCCTAAAAAATACTTTTAATATTGGTTTATTTTTCCAC-----TTAAGTTTTCTTAAAAAGGCATTCAGAAAACACAATTTCCCAACAGGTTTTGTATA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167370441 94 - 180432695 tcctaaaaaatacttttaatattggtttatttttccaC-----TTAAGTTTTCTTAAAAAGGCATTCAGAAAACACAATTTCCCAACAGGTTTTGTATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31646547 94 -  90373283 TCCTAAAAAATACTTTTAATATTGGTTTATTTTTCCAC-----TTAAGTTTTCTTAAAAAGGCATTCAGAAAACACAATTTCCCAACAGGTTTTGTATA
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91577218 84 +  98207768 TTCTATGAAACACTTTTAGTACAATGTTACTTCTACACTCACTTTAAGTTGTCT-------------AGAAAACTCAG--TCCCAGCGTGCTGTGTACA
i mm10.chr16                C 0 I 619
s canFam3.chr31              28066018 86 +  39895921 CCCTGAAAAATACTTTT------GCTTCGTTTTTTTA------TTTACTTTTCTTAAATACTTAATCA-AAAATTCAATTTCCTAACCAGTTTTGTATA
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37453617  4 +  50472720 I

a score=84652.000000
s hg38.chr21_GL383581v2_alt     48850 38 +    116689 TAATATG--CATACTATGTATTA---ATTATTATTATTA-----tttt
s panTro4.chr21              19552980 38 +  32799110 TAATATG--CATACCATGTATTA---ATTATTATTGTTA-----tttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34449914 38 +  48394510 TAATATG--CATATCATGTATTA---ATTATTAtttttt-----tttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19987516 43 +  32716333 taatatg--tatatcatgtatta---attattattattattatttttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185150161 42 - 198365852 TAACATG--CATACCATGtattaattattattattatta----ttttt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178990070 39 - 192294377 TAACATG--CATACCATGtatta---attattattatta----ttttt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167370535 39 - 180432695 TAACATG--CATACCatgtatta---attattattatta----ttttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31646641 39 -  90373283 TAACATG--CATACCATGtatta---attattattatta----ttttt
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28066104 40 +  39895921 TGACATGATAATAACATATATTA---AATCTGATTTCTG-----tttt
i canFam3.chr31             C 0 I 173
e mm10.chr16                 91577302 619 +  98207768 I
e calJac3.chr21              37453617  4 +  50472720 I

a score=685042.000000
s hg38.chr21_GL383581v2_alt     48888 293 +    116689 gatatggagtcttgctctgtcacccaagctgaaatgcagtggcactatctcgactcactccaacccccgtgtctcctgggttcaagtggttctcctgcctcagccttccgagtagctgggattacaggcacacaccaccatgcccgactaatgtttgtatttttattagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcagatgatccacccacttcagcctcccaaagtgctgggattacagacatgagccaccacacctggcTGGCCACTAG
s panTro4.chr21              19553018 291 +  32799110 gatatggagtcttgctctgtcacccaagctgaaatgcagtggcactatctcgactcactccaacccccgt--ctcccgggttcaagtgattctcctgcctcagccttccaagtagctgggattacaggcacacaccaccatgcccgactaatttttgtatttttattagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcaggtgatccacccacttcagcctcccaaagtgctgggataacagacatgagccaccacacctggcTGGCCACTAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34449952 291 +  48394510 gatatggagtcttgctctgtcacccaggctgaaatgcagtggcactatctcgactcactccaacccccgt--ctcccgggttcaagtgattctcctgcctcagccttccgagtagctgggattacaggtatgcaccaccacgcccggctaatttttgtatttttattagagatggggtttcaccatgttggccaggctggtctcaaacccctgacctcagatgatccacccgcttcagcctcccaaagtgctgggattacaggcctgagccaccacacctggctGGCCACTAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19987559 291 +  32716333 tatatggagtcttgctctgtcacccaggctgaaatgcagtggcactatctcgactcactccaacccccat--ctcccaggttcaagtgattctcctgcctcagccttccgagtagctgggattacaggcacgcaccaccatgcccagctaatttttgtatttttattagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcagatgatccacccgcttcagcctcccaaagtgctgggattacaggcatgagccaccacacctggcTGGCCACTAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185150203 280 - 198365852 GATACA-------gctctgtcacccaggctgaaatgcagtggcactatcttgactcactccaacccccgc--ctcccgagttcaagtgattctcctgcctcagccttctgagtagctgggattacagtcatgcaccaccatgcccggctaatttttgtatttttattagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcaggtgatccacctgcctcagcctcccaaagtgctaggattacaggcatgagccaccacgc----ctggccACTAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178990109 280 - 192294377 GATACA-------gctctgtcacccaggctgaaatgcagtggcactatcttgactcactccaacccccgc--ctcccgagttcaagtgattctcctgcctcagccttctgagtagctgggattacagtcatgcaccaccatgcccggctaatttttgtatttttattagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccacgc----ctggccACTAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167370574 280 - 180432695 gataca-------gctctgtcacccaggctgaaatgcagtggcactatcttgactcactccaacccccgc--ctcccgagttcaagtgattctcctgcctcagccttctgagtagctgggattacaggcatgcaccaccatgcccggctaatttttgtatttttattagagatggggtttcaccatgttggccaggctggtctcgaacccctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccacgc----ctggccactat
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31646680 280 -  90373283 GATACA-------gctctgtcacccaggctgaaatgcagtggcactatcttgactcactccaacccccgc--ctcccgagttcaagtgattctcctgcctcagccttccgagtagctgggattacaggcatgcaccaccatgcccggctaatttttgtatttttattagagatggggtttcaccgtgttggccaggctggtctcaaatccctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccacgc----ctggccACTAT
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91577302 619 +  98207768 I
e canFam3.chr31              28066144 173 +  39895921 I
e calJac3.chr21              37453617   4 +  50472720 I

a score=686665.000000
s hg38.chr21_GL383581v2_alt     49181 250 +    116689 GTATTAATTCTGGTTTTTCCTTTTTTCTTCATAAAGGTACTTTACCTGTTGTTG---TTAA------TTTTTTTTTTCCCGAAAGGCTAGTCAagtgaaacaatgggtctgatagggttttttaataagacacaggctatggaagcagcagtctggattcaaatccaggcttctcatttactagctaggcatcctaaagcaagccctaaactttatttcctcatcta-taaaatgggaataacactgggtgtggtggcta-------
s panTro4.chr21              19553309 243 +  32799110 GTATT----CTGGTTTTTCCTTTTTTCTTCATAAAGGTACTTTACCTGTTGTT------AA------TTTTTTTTTTTCCAAAAGGCTAGTCAAGTGAAACAATGGGTCTGATAGGGTTTTTTAATaagacacaggctatggaagcagcagtctggattcaaatccaggcttctcatttactagctaggcatcctaaagcaagctctaaactttatttcctcatcta-taaaatgggaataacactgggtgtggtggcta-------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34450243 249 +  48394510 ATGTTAATTCTGGTTTTTCCTTTTTTCTTCATAAAGGTACTTTACCTGTTGTTA-----AT------TTTTTTTTTTTCCGAAAGGCTAGTCAAGTGAAACAATGGGTCTGATAGGGTTTTTTAATaaaacacaggctatggaagcagcagtctggattcaaatccaggcttctcatttactagctaggcatcctaaagcaagctctaaactttatttcctcatctattaaaatgggaataaCgctgggtgtggtggcta-------
i ponAbe2.chr21             C 0 I 925
s nomLeu3.chr25              19987850 254 +  32716333 GTATTAATTCTAGTTTTTCCTTTTTTCTTCATAAAGGTACTTTACCTGTTGTTG---TTAA--TTTTTTTTTTTTTTTCCGAAAGGCTAGTCAAGTGAAACAATGGGTCTCATAGGGTTTTTTAATaaaacacaggctatggaagcagcagtctggattcaaatccaggcttctcatttactagctaggcatcctaaagcaagctctaaactttatttcctcatcta-taaaatggaaataatgctgggtgtggtggcta-------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185150483 255 - 198365852 GTATTAATTCTGCTTTTTCCTTTTTTCTTAATAAAGGTACTTTACCTGTTGTTGTCGTTAA---TTTTTTTTTTTTTTTCAAAAGGCTAGTTAAGAGAAACAACGGGTCTGATA-TGTTTTTTAACaaaacacaggctatggaagcagcagtctggattcaaatcccagcttctcaattactagctaggcatcctaaagcaagctctaaactttatttcctcgtcta-taaaatgggaataaCgctgggtgcagtggctc-------
i rheMac3.chr3              C 0 I 7
s macFas5.chr3              178990389 256 - 192294377 GTATTAATTCTGGTTTTTCCTTTTTTCTTAATAAAGGTACTTTACCTGTTGTTGTCGTTAA--TTTTTTTTTTTTTTTTCAAAAGGCTAGTTAAGAGAAACAACGGGTCTGATA-TGTTTTTTAACaaaacacaggctatggaagcagcagtctggattcaaatcccagcttctcaattactagctaggcatcctaaagcaagctctaaactttatttcctcgtcta-taaaatgggaataaCgctgggtgcagtggctc-------
i macFas5.chr3              C 0 I 7
s papAnu2.chr3              167370854 254 - 180432695 GTATTAAttctggtttttccttttttcttaataaaggTACTTTACCTGTTGTTgtcgttaa----ttttttttttttttcaaaaggctAGTTAAGAGAAACAACGGGTCTGATA-TGTTTTTTAACAAAACACAGGCTATGGAAGCAGcagtctggattcaaatcccagcttctcaATTACTAGCTAGGCATCCTAAAGCAAGCTCTAAACTTTATTTCctcgtcta-taaaatgggaataacgctgggtgcagtggctc-------
i papAnu2.chr3              C 0 I 7
s chlSab2.chr2               31646960 258 -  90373283 GTATTAATTCTGGTTTTTCCTTTTTTCTTAATAAAGGTACTTTACCTGTTGTTGTCGTTAATATATATATATTTTTTTTCAAAAGGCTAGTTAAGAGAAACAACAGGTCTGATA-TGTTTTTTAACaaaacacaggctatggaagcagcagtctggattcaaatcccagcttctcaattactagctaggcatcctaaagcaagctctaaactttatttcctcgtcta-taaaatgagaataaCgctgggtgcagtggctc-------
i chlSab2.chr2              C 0 I 7
s calJac3.chr21              37453621 250 +  50472720 GTATTAATTCCAGTTTTTACTTTTTTCTTAATAAAGGTACTTTACCTATTT----------------TGTTTTGTTTTTCAAAAGGCTGGTCAAGTGAAACAGTGAGCCTGACACAGCTTTTTAACaaaacacagactatgcaagcagcagtctggattcaaatcccagctcctcatttactagctaggcatcctaaagcaagctctaagccttattttctcatcta-taaaatgggaataatgctgggctcagtggcttacacctg
i calJac3.chr21             I 4 C 0
e mm10.chr16                 91577302 619 +  98207768 I
e canFam3.chr31              28066144 173 +  39895921 I

a score=1803751.000000
s hg38.chr21_GL383581v2_alt     49431 626 +    116689  
s panTro4.chr21              19553552 631 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34451417 648 +  48394510  
i ponAbe2.chr21             I 925 C 0
s nomLeu3.chr25              19988104 630 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185150745 649 - 198365852  
i rheMac3.chr3              I 7 C 0
s macFas5.chr3              178990652 653 - 192294377  
i macFas5.chr3              I 7 C 0
s papAnu2.chr3              167371115 653 - 180432695  
i papAnu2.chr3              I 7 C 0
s chlSab2.chr2               31647225 653 -  90373283  
i chlSab2.chr2              I 7 C 0
s calJac3.chr21              37453871 626 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91577302 619 +  98207768 I
e canFam3.chr31              28066144 173 +  39895921 I

a score=64324.000000
s hg38.chr21_GL383581v2_alt     50057 19 +    116689 TAAATGTGAATTCAAAGGG
s panTro4.chr21              19554183 19 +  32799110 TAAATGTGAATTCAAAGGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452065 19 +  48394510 TAAATGGGAATTTAAAGGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19988734 19 +  32716333 TAAATGGGAATTTAAAGGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185151394 19 - 198365852 TAAATGGGAATTTAAAAGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178991305 19 - 192294377 TAAATGGGAATTTAAAAGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167371768 19 - 180432695 tAAATGGgaatttaaaagg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31647878 19 -  90373283 TAAATGGGAATTTAAAAGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37454497 19 +  50472720 TAAATGGGAACTTAAAAGG
i calJac3.chr21             C 0 I 635
s canFam3.chr31              28066317 19 +  39895921 tacatgggaactgcaaagg
i canFam3.chr31             I 173 C 0
e mm10.chr16                 91577302 619 +  98207768 I

a score=347095.000000
s hg38.chr21_GL383581v2_alt     50076  98 +    116689 TAAAATATATAAAGGATCCAGCTAAAGTCTTGATACACAGCAAGACCTCTAGTTAAAAG---GCC--TCTCTGCTCTTATGTAACAGTGGAATTCTCACCTTT
s panTro4.chr21              19554202  98 +  32799110 TAAAATATATAAAGGATCCAGCTAAAGTCTTGATACACAGCAAGACCCCTAGTTAAAAG---GCC--TGTCTGCTCTTATGTAACAGTGGAATTCTCACCTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452084  98 +  48394510 TAAAATATATAAAGGATCCAGCTAAAGTCTTGATACACAGCAAGACCCCTAGTTAAAAG---GCC--TGTCTTCTCTTATGTAACAGTGGAATTCTCACCTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19988753  98 +  32716333 TAAAATATATAAAGGATCCAGCTAAAGTCTTGATACACAGCAAGACCCCTAGTTAAAAG---GCC--TGTCTGCTCTTATGTAACAGTGGAATTCTCACCTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185151413  98 - 198365852 TAAAATATATAAAGGATCCAGCTCAAGTCTTGATACACAGCAAGACCCCTATTTAAAAG---GCC--TGTCTGCTCTTATGTAACAGTGGAATTCTCACCCTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178991324  98 - 192294377 TAAAATATATAAAGGATCCAGCTAAAGTCTTGATACACAGCAAGACCCCTATTTAAAAG---GCC--TGTCTGCTCTTATGTAACAGTGGAATTCTCACCCTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167371787  98 - 180432695 taaaatatataaaggatcCAGCTAAAGTCTTGATACACAGCAAGACCCCTATTTAAAAG---GCC--TGTCTGCTCTTATGTAACAGTGGAATTCTCACCCTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31647897  98 -  90373283 TAAAATATATAAAGGATCCAGCTAAAGTCTTGATACACAGCAAGACCCCTATTTAAAAG---GCC--TGTCTGCTCTTATGTAACAGTGGAATTCTCACCCTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37455151 100 +  50472720 TAAAATATATAAAGCATCCAGCTAAAGTCTTGGTATACAGCAAGACCCCTAGTTAAAAG---GCCTATGTCTACTCTTATGTAACAGTGGAATTTTCACCTTT
i calJac3.chr21             I 635 I 113
s canFam3.chr31              28066336 101 +  39895921 caacatatataaatcatccagctgagctcttagctcagagcaggaccccaattaaatagtTTACA--TATGCCCCTTTATACAACAGTGGAATTTTCACCTTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91577302 619 +  98207768 I

a score=234757.000000
s hg38.chr21_GL383581v2_alt     50174 67 +    116689 TAAAAGAAGTTCTAT-CATTG-TAACCAATCCATGGGATTTATATGTGTTCCATA-TATATGCTGCCTTA
s panTro4.chr21              19554300 67 +  32799110 TAAAAGAAGTTCTAT-CATTG-TAACCAATCTATGGGATTTATATGTGTTCCATA-TATATGCTGCCTTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452182 67 +  48394510 TAAAAGAAGTTCTAT-CATTG-TAACCAATCCATGGGATTTACATGTGTTCCATG-TATATGCTGCCTTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19988851 67 +  32716333 TAAAAGAAGTTCTAT-CACTG-TAACCAATCCATGGGATTTATATGTGTTCCATG-TACATGCTGTGTTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185151511 67 - 198365852 TAAAAGAAGTTCTAT-CATTG-TAACCAGTCCATGGGATTTATATGTGTTTCATG-TATATGCTGCCTTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178991422 67 - 192294377 TAAAAGAAGTTCTAT-CATTG-TAACCAGTCCATGGGATTTATATGTGTTTCATG-TATATGCTGCCTTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167371885 67 - 180432695 TAAAAGAAGTTCTAT-CATTG-TAACCAGTCCATGGGATTTATATGTGTTTCATG-TATATGCTGCCTTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31647995 67 -  90373283 TAAAAGAAGTTCTAT-CATTG-TAACCAGTCCATGGGATTTATATGTGTTTCATG-TATATGCTGCCTTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37455364 67 +  50472720 TAAAATAAGTTCTAT-CACTG-TAACCAATCCATGGGATTTATATGTGCTCCATG-TATATGCTGCCTTA
i calJac3.chr21             I 113 C 0
s canFam3.chr31              28066437 70 +  39895921 TCAAAGAAGTTCTACACACTGTTAACTAATTCAAAGGATTTATACATGTTTCATTCTATATGCTGCTCTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91577302 619 +  98207768 I

a score=1276042.000000
s hg38.chr21_GL383581v2_alt     50241 331 +    116689 --ATTAAGTTGACATTTCTGTAAATGTTACAGGCGTGGTTAAAAAATAAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGTCCCGGATAAACATCAGTATCTACATACACAAAGT-AAAACAGATTAGA--------------------------------------------CGGTTAT-ATAGGCAAACGGCAGTAATAAAG-----------TATCAGTGCCATTCATAATGATAC--ATTTTGTATATTACAACATACTGCTATTATTCATTAACTGTAAGACATCTATAATGAAACTGAAAGAAGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAATGAACT
s panTro4.chr21              19554367 330 +  32799110 --ATTAAGTTGACATTTCTGTAAATGTTACAGGAGTGGTTAAAAATTA-GGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGTCCCGGATAAACATCAGTATCTACATACATAAAGT-AAAACAGATTAGA--------------------------------------------CGGTTAT-ATAGGCAAACAGCAGTAATAAAG-----------TATCAGTGCCATTCATAATGATAC--ATTTTGTATATTAAAACATACTGCTATTATTCATTAACTCTAAGACGTCTATAATGAAACTGAAAGACGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAATGAACT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452249 330 +  48394510 --ATTAAGTTGACATTTCTGTAAATGTTACAGGTGTGGTTAAAAAATTAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGTCCCGGATAAACATCAGTATCTACATACATAAAGT-AAAACAGATTAGA--------------------------------------------CGGTTAT-ATAGGCAAACGGCAGTAACAAAG-----------TATCAGTGCCATTCATAATGATAC--ATTTTGTATATTACAACATACTGCTATTATTCATTAACTCTAAGACATCTATAATGAAACTGAAAGAAGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAA-GAACT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19988918 331 +  32716333 --ATTAAGTTGACATTTCTGTAAATGTTACAGGCGTGGTTAAAAAATTAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGTCCCGGATAAACATCAGTATCTACGTACATAAAGT-AAAACAGATTAGA--------------------------------------------GGGTTAT-ATAGGCAAACAGCAGTAATAAAG-----------TATCAGTGCCATTCATAATGATAC--ATTTTGTATATTACAACATACTGCTATTACTCATTAACTCTAAGACATCTATAATGAAACTGAAAGAAGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAATGAACT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185151578 331 - 198365852 --ATTAAGCTGACATTTCTGTAAATGTTACAGGTGTAGTTAAAAAATTAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGACCCGGATAAACATCAGTATCTACATACATAAAGT-AAAACAGATTAGA--------------------------------------------AGGTTAT-ATAGGCAAACGTCACTAATAAAG-----------TATCAATACCATTCATAATGATAC--ATTTTGTATATTACAACATAACACTATTATTCATTAACTCTAAGACATCTATAATGACACTGAAAGAAGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTATTCTGGATAAAAGTCAATGAACT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178991489 331 - 192294377 --ATTAAGCTGACATTTCTGTAAATGTTACAGGTGTAGTTAAAAAATTAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGACCCGGATAAACATCAGTATCTACATACATAAAGT-AAAACAGATTAGA--------------------------------------------AGGTTAT-ATAGGCAAACGTCACTAATAAAG-----------TATCAATACCATTCATAATGATAC--ATTTTGTATATTACAACATAACACTATTATTCATTAACTCTAAGACATCTATAATGACACTGAAAGAAGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAATGAACT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167371952 331 - 180432695 --ATTAAGCTGACATTTCTGTAAATGTTACAGGTGTAGTTAAAAAATTAGGCAACTTACCTAAAAAATATAAGCGCATTTTGAAAAAACACAGCTAGACCCGGATAAACATCAGTATCTACATACATAAAGT-AAAACAGATTAGA--------------------------------------------AGGTTAT-ATAGGCAAACGTCACTAATAAAG-----------TATCAATATCATTCATAATGATAC--ATTTTGTATATTACAACATAACACTATTATTCATTAACTCTAAGACATCTATAATGacactgaaagaagaaaatgccaATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAATGAACT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31648062 331 -  90373283 --ATTAAGCTGACATTTCTGTAAATGTTACAGGTGTAGTTAAAAAATTAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGACCCGGATAAACATCAGTATCTACATACATAAAGT-AAAACAGATTAGA--------------------------------------------AGGTTAT-ATAGGCAAACGTCACTAATAAAG-----------TATCAATACCATTCATAATGATAC--ATTTTTTATATTACAACATAACACTATTATTCATTAACTCTAAGACATCTATAATGACACTGAAAGAAGAAAATGCCAATTTAATTCCCCCAAAGCAAAGGACTGCTCTTACTCTGGATAAAAGTCAATGAACT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37455431 329 +  50472720 --ATTAAGCTGACATTTCTGTAAATGTTACAGGTGTAGTTAAGAAATTAGACAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAGTCCCGGATAAACATCAGTATCTACACACATAAAGT-AAAACAGATTAGA--------------------------------------------AGGTTAG-ATAGGCAAACGGCAGTAATAAAG-----------TGTCAGTGCCTTTCATAATGACGC--ATTTTGTATATTACAACATACTGCTACTATTCATTAACTCTAAGACATCTATAATGAAACTGAAAGAAGAAAATGCCAACTTAATCCCCCCAAAACAAA--ACTGCTCTTACTCTAGATAAAAGTCAATGAACT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91577921 368 +  98207768 --ataaaattaaTCTTTTTAAAAATGTAAAAGGAA-----AGGAAATTAGACAACTTACCTAAAAAATATAAGAGCATTTTGAAAGAACACAGCTAGTCCAGGGTAAACATCAATATCTGCACACggagagg-gaaacggattagaggagggggcggcagaggagggaggtgagggggtggggggcgagggggcggc-agaggaggggggcagtggaggaggggagcggCACTGCCTGTGCAGTTCAGAGCAACATGGGCTCTGTGTGTCAGAACACAGGACATTTAC-CGTCAACTCAAAGATGTCTACATTGAAAC----------AAAT---AATTTCATT-CCCTAAAACAAAAGGTTACTTTTACTCCAAATAAATGCCAGGGAACT
i mm10.chr16                I 619 I 228
s canFam3.chr31              28066507 321 +  39895921 ATAATGAAGTGAGATTTCTGTAAATGCTTTAGGTGTGGTTAAGAAATTAGGCAACTTACCTAAAAAATATAAGTGCATTTTGAAAAAACACAGCTAATCCTGGATAAACATCAGTATCTGCACATACAAAGTAAAAACAGATTAGA--------------------------------------------AGATTGCAAAAGGCAAATGGCAGTGGTGCAG-----------TATTTGTGCCACTCACAATGACAC--ACTCTGTATATTATAAAATACGGCTATTATTCATTA-----------TCTATGATGAAACTTTAGGAAGAAAATATCCATCTTATTCTCCCAAAACATC---TTATTCTCACTCTGGATAAAAGACAGTGAACT
i canFam3.chr31             C 0 C 0

a score=295089.000000
s hg38.chr21_GL383581v2_alt     50572  93 +    116689 T-ACAAAGTTTTCTTTTAGTC-AAAGTAATTGC----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC---AGTAACTTGCTC---------------CTTTGCCTCCTATGGCC
s panTro4.chr21              19554697  93 +  32799110 T-ACAAAGTTTTCTTTTAGTC-AAAGTAATTGC----TGGTTCTAGCTATATCAAAACTGCTGAGGAAGC---AGTAACTTGCTC---------------TTTTGCCTCCTATGGCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452579  94 +  48394510 T-ACCAAGTTTTCTTTTAGTCTAAAGCAATTGT----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC---AGTAACTTGTTC---------------CTTTGCCTCCTACAGCC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19989249  94 +  32716333 T-ATCAAATTTTCTTTTAGTCTAAAGTAATTGC----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC---GGTAACTTGTTC---------------CTTTGCCTCCTATGGCC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185151909  95 - 198365852 TAATCAAGTTTTCTTTTAGTCTAAAGTAATTGC----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC---AGTAACTTGTTC---------------CTTTGCCTCCTATGGCC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178991820  95 - 192294377 TAATCAAGTTTTCTTTTAGTCTAAAGTAATTGC----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC---AGTAACTTGTTC---------------CTTTGCCTCCTATGGCC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167372283  95 - 180432695 TAATCAAGTTTTCTTTTAGTCTAAAGTAATTGC----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC---AGTAACTTGTTC---------------CTTTGCCTCCTATGGCc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31648393  94 -  90373283 TAATCAAGTTTTCTTTTAGTCTAAAGTAATTGC----TGGTTCTAGCTACATCAAAACTGCTGAGGAAGC----GTAACTTGTTC---------------CTTTGCCTCCTATGGCC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37455760  94 +  50472720 T-ATCAAGTTTTCTTTTTCTCTAAAGTAATTGC----TGGTTCTAGCTATATCAAAATTGCTGAGATAGC---AGTAACTTGTTC---------------CTTTGCCTCCTATGGCT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28066828 117 +  39895921 TCGTAGATTCTCTTTTTTGTCTAAGGCGATTCCTATTTGCTTGTAGCTGCAAGAGAGCTGCTAAGGAAGCAGCAGTAGCTCGCTCTGCCCTTATTTGCAGTTTTGCCTCTTGAGGTT
i canFam3.chr31             C 0 I 292
e mm10.chr16                 91578289 228 +  98207768 I

a score=826376.000000
s hg38.chr21_GL383581v2_alt     50665 275 +    116689 AACACTGAAATGCAAAATCGTAAAAACATACAAAATAAATTCTTGACTTTTAAACAGTCTGTTAATTTATTTTCTTTCATGAATTCAAGAGGttttttgtgtttgtttttaaagaaatggggcctcactatattgcccagactgg-agtgcagcagctactgacaggcacaatcatagcaaactacagcccaaactcctgggctcaagtgatcctcctgcctcagcgtcccaagtggatgggactacaggcacacaccacaatgcctggcTCTCAA
s panTro4.chr21              19554790 275 +  32799110 AAAATTGAAATGCAAAATCGTAAAAACATACAAAATAAATTCTTGACTTTTAAACAGTCCGTTAATTTATTTTCTTTCATGAATTCAAGAGGttttttgtgtttgtttttaaagaaatggggcctcactatattgcccagactgg-agtgcagcagctactgacaggcacaatcattgcaaactacagcccaaactcctgggctcaagtgatcctcctgcctcagcgtcccaagtggctgggactacaggcacacaccacaatgcctggcTCTCAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452673 275 +  48394510 AACATTGAAATACAAAATCGTAAAAATATACAAAATAAATTCTTGACTTTTAAACAGTCTGTTAATTTATTTTCTTTCATGAATTCAAGAGGttttttgtgtttgtttttaaagaaatggggcctcactatattgctcagactgg-agtgcagcagctactgacaggcacaatcatagcaaactacagcccaaagtcttgggctcaagtgatcctcctgcctcagcctcccaagtggctgggactacaggcacacaccacaatgcctggcTCTCAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19989343 273 +  32716333 AAC--TGAAATACAAAATCGTAAAAATATACAAAATAAATTCTTGACTTTTAAACAGTCTGTTAATTTATTTTCTTTCATGAATTCAAGAGGttttttgtgtttgtttttaaagaaatggggcctcactgtattgcccagactgg-aatgcagcagctactgacaggcacaatcatggcaaactacagcccaaactcttgggctcaagtgatcctcctgcctcagcctcccaagtggctgggactacaggctcacatcacaatgcctggcTCTCAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152004 274 - 198365852 AACAATGAAATACAAAATCGTAAAAATATACAAGTTAAATTCTTGACTTTTAAACAGTCTGTTAATTTATTTTCTTTCATGAATTCAAGAAG-tttttgtgtttgtttttaaagaaatggggcctcactacattgcccagactgg-agtgcagcagctactgacaggcactatcatagcaaactacagtccaaactcctgggctcaagtgatcctcctgcctcagcctcccatgtggctgggactacaggcacacaccacagtgcctggcTCTCAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178991915 274 - 192294377 AACAATGAAATACAAAATCGTAAAAATATACAAGTTAAATTCTTGACTTTTAAACAGTCTGTTAATTTATTTTCTTTCCTGAATTCAAGAAG-tttttgtgtttgtttttaaagaaatggggcctcactacattgcccagactgg-agtgcagcagctactgacaggcactatcatagcaaactacagtccaaactcctgggctcaagtgatcctcctgcctcagcctcccatgtggctgggactacaggcacacaccacagtgcctggcTCTCAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167372378 275 - 180432695 aacaatgaaatacaaaatcgtaaaaatatacaaattaaattctTGACTTTTAAACAGtctgttaatttattttctttcatgaattcaagaagttttttgtgtttgtttttaaagaaatggggcctcactacattgcccagactgg-agtgcagcagctacTGACAGGCACTATCATAGCAAACTACagtccaaactcctgggctcaagtgatcctcctgcctcagcctcccatgtggctgggactacaggcacacaccacagtgcctggctctcaA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31648487 275 -  90373283 AACAATGAAATACAAAATCATAAAAATATACAAATTAAATTCTTGACTTTTAAACAGTCTGTTAATTTATTTTCTTTCATGAATTCAAGAAGttttttgtgtttgtttttaaagaaatggggcctcactacattgcccagactgg-agcgcagcagctactgacaggcactatcatagcaaactacagtccaaactcctgggctcaagtgatcctcctgtctcagcctcccatgtggctgggactacaggcacacaccacagtgcctggcTCTCAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37455854 268 +  50472720 AATATTGAAATACAAAATCGCAAAAATATATAAATTAAATTCTTAACTTTTAAACAGTCTG-----TTATTTTCTTCCATGAAATCAAGAGACTTAtt---ttagtttttaaagaaatggggcctcactacattgcctggactggaagtgcagcagctactaagagccacaatcatggcacactacagcccaaactcctgggctcaagtgatcctcctgcctcagcctcccaagtagctgggactacaagcacacaccacagggcctggcTCTCAA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578289 228 +  98207768 I
e canFam3.chr31              28066945 292 +  39895921 I

a score=4095.000000
s hg38.chr21_GL383581v2_alt     50940 1 +    116689 T
s panTro4.chr21              19555065 1 +  32799110 T
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452948 1 +  48394510 T
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19989616 1 +  32716333 T
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152278 1 - 198365852 T
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178992189 1 - 192294377 T
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167372653 1 - 180432695 T
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31648762 1 -  90373283 T
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37456122 1 +  50472720 T
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28067237 1 +  39895921 t
i canFam3.chr31             I 292 C 0
e mm10.chr16                 91578289 228 +  98207768 I

a score=371559.000000
s hg38.chr21_GL383581v2_alt     50941 131 +    116689 CCAGGAGTTTTATCATGCAAAT----------ATGTCAGATAT------------AA-------ATAACACAGTTAG-AATTTATCAT---TCTCTTTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTTATAGGAAAAGAAAAGAAACAAA------ATGGAAA
s panTro4.chr21              19555066 134 +  32799110 CCAGGAGTTTTATTATGCAAAT----------ATGTCAGATAT------------AA-------ATAACACAGTTAG-AATTTATCATCATTCTCTTTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTTATAGGAAAAGAAAAGAAACAAA------ATGGAAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34452949 132 +  48394510 CCAGGAGTTTTATTATGCAAAT----------ATGTCAGATAT------------AA-------ATA--ACAGTTAG-AATTTATCATCATTCTCTTTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTTATAGGAAGAGAAAAGAAACAAA------ATGGAAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19989617 130 +  32716333 CCAGGAGTTTTATTATGCAAAT----------ATGTCAGATAT------------AA-------ATAACACAGTTAG-AATTTATCATCATTCTCTTTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTGTCTTTATAGGAAGAGAAAAG----AAA------ATGGAAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152279 134 - 198365852 CCAGGAGTTTTATTATGCAAAC----------ATGTCAGATAT------------AA-------ATAACACAGTTAT-AATTTACCATTATTCTCTCTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTTATAGGAAGAGAAAAGAAACAAA------ATGGAAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178992190 134 - 192294377 CCAGGAGTTTTATTATGCAAAC----------ATGTCAGATAT------------AA-------ATAACACAGTTAT-AATTTACCATTATTCTCTCTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTTATAGGAAGAGAAAAGAAACAAA------ATGGAAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167372654 134 - 180432695 CCAGGAGTTTTATTATGCAAAC----------ATGTCAGATAT------------AA-------ATAACACAGTTAT-AATTTATCATTATTCTCTCTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTtataggaagagaaaagaaacaaa------atggaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31648763 134 -  90373283 CCAGGAGTTTTATTATGCAAAC----------ATGTCAGATAT------------AA-------ATAACACAGTTAT-AATTTATCATTATTCTCTCTCACTGA----ATCTATCCTGGAGGAAATGGT-TACTATCTTTATAGGAAGAGAAAAGAAACAAA------ATGGAAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37456123 118 +  50472720 CCAGGAGTTTTATTATGCAAAT----------GTGTCAGATAT------------AA-------ACAACTTAGTTAACAATTTATCATCATTCTCTCTCACTCA----GTCTAT------------------CTATCTTTATAGGAAGAAAAAAGAAACAAA------ATGGAAA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91578517 129 +  98207768 AAAGGAGGTTGATTATTTAAATCTGCTGACTCATGTGTGACATCATGCAAACCCAGA-------GTGACACA------AAGGAGCCATCATGCTCTCTTCATGA-----------CTGAAGCAATCAGC-TAA-ATATCCCTAGGAAG--------------------ATGGGAA
i mm10.chr16                I 228 C 0
s canFam3.chr31              28067238 146 +  39895921 cctcaaactttatcat---agc----------ttctcatgtat------------agggatatcagagtacaggtag-ggtt---cagtactctccatggttgcaggcatccatggcgggggtcttggtatataacccccatggaaaaggtgggGGGAAAACTATTGTATAGAAA
i canFam3.chr31             C 0 I 233

a score=600440.000000
s hg38.chr21_GL383581v2_alt     51072 189 +    116689 CTACTTAAATTTTTGTGGATTATTAACTTTTGTAAAACTACAAATGTTGATTTAAAAAATACTGGAGAAGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAacaatacagcagcatggtt-aagagctccaagtttgagccagacccaggtt--tgaatcctatctataccaatgactaa
s panTro4.chr21              19555200 188 +  32799110 CTACTTAAATTTTTGTGGATTATTAACTTTTGTAAAACTACAAATGTTGATT-AAAAAATACTGGAGAAGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAacaatacagcagcatggtt-aagagctccaagtttgagccagacccaggtt--tgaatcctatctataccaatgactaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453081 189 +  48394510 CTACTTAAATTTTTGTGGATTATTAACTTTTGTAAAACTACAAATGTTGATTAAAAAAATACTGGAGAGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAacaatacagcagcatggtt-aagagctccaagtttgagccagacccaggtt--tgaatcctatctacaccaatgactaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19989747 189 +  32716333 CTACTTAAATTTTTGTGGATTATTAACTTTTGTAAAACTACAAATGTTGATTAAAAAAATACTGGAGAGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGTTATCATAGCAAAAaatacagcagcatggtt-aagatctccaagtttgagccagacccaggtt--tgaatcctatctataccaatgactaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152413 187 - 198365852 CTACTTAAATTTTCGTAGATGATTAACTTTTGTAAAACTATAAATCTTGATT-AAAAAATACTGGAGAGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAACAA-AGaacaccatggtt-aagagctccaaatttgagccagacccaggtt--tgaatcctatctacaccaatgactaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178992324 187 - 192294377 CTACTTAAATTTTCGTAGATGATTAACTTTTGTAAAACTATAAATCTTGATT-AAAAAATACTGGAGAGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAACAA-AGaacaccatggtt-aagagctccaaatttgagccagacccaggtt--tgaatcctatctacaccaatgactaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167372788 187 - 180432695 ctaCTTAAATTTTTGTAGATGATTAACTTttgtaaaactataaatgttgATT-AAAAAATACTGGAGAGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAACAA-AGAACACCATGGTT-AAGAGTTCCAaatttgagccagacccaggtt--TGAATCCTATCTACACCAATGACTAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31648897 187 -  90373283 CTATTTAAATTTTTGTAGATGATTAACTTTTGTAAAACTATAAATGTTGATT-AAAAAATACTGGAGAGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCATAGCAAACAA-AGaacaccatggtt-aagagctccaaatttgagccagacccaggtt--tgaatcctatctacaccaatgactaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37456241 186 +  50472720 CTACTTAAATTTTTGTGGATGATTAACTTTTGTAAAACTATAAATATTGATT--AAAAATACCGGA-AGGATGAAGAAACTGGTTCA-ATTCTGAGCTCTTGATATCACAGCAAacaatacagaagcatggtt-aagagctccaagtttgagccagacacaagtt--tgaatcctctctacaccactgactaa
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91578646 165 +  98207768 ---------------------------TTTTGCTAAACTGTAACTACTGGTGTAAAAACCACTGGCTATCATAAAGAAACTGGTTTACATTTCAGTCTTCTGAGAGCATAAGAAACAA-acagcaggttggctggagagttccaagtctgagccaagtccttgctgatgaatcctaattctgctactgactaa
i mm10.chr16                C 0 C 0
e canFam3.chr31              28067384 233 +  39895921 I

a score=569738.000000
s hg38.chr21_GL383581v2_alt     51261 152 +    116689 ctgtatg---accttgggcaaattatttaacctcagcatatcttcatttcctcacctgtaaaacgggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtgactctatatagtgcttagaacagtatctagcctataaagtaata
s panTro4.chr21              19555388 152 +  32799110 ctgtacg---accttgggcaaattatttaacctcagcatatcttcatttcctcacctgtaaaaggggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtggctctatatagtgcttagaacagtatctagcctataaagtaata
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453270 152 +  48394510 atgtacg---accttgggcaaatcatttaacctcagcatatcttcatttcctcacctgtgaaacgggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtgactctatatagtgcttagaacagtatctagcctataaagtaata
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19989936 152 +  32716333 acgtatg---accttgggcaaattatttaacctcagcatatcttcatttcctcacctgtaaaacgggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtgactctatatagtgcttagaacagtatctagcctataaagtaata
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152600 151 - 198365852 atgtatg---accttggacaaattatttaacctcagtatatcttcatttcctcatctgtaaaacaggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtgactctatatagtg-ttagaacaatatctagcctataaagtaata
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178992511 151 - 192294377 atgtatg---accttggacaaattatttaacctcagtatatcttcatttcctcacctgtaaaacaggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtgactctatatagtg-ttagaacaatatctagcctataaagtaata
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167372975 151 - 180432695 ATGTATG---ACCTTGGACACATTATTTAACCTCAGTATATcttcatttcctcacctgtaaaacaggCATTGTAATAGCACCTACTC--CAGA---GTGTAAGAATTAGATGAGTGACTCTATATAGTG-TTAGAACAATATCTAGCCtataaagtaata
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31649084 151 -  90373283 atgtatg---accttggacaaattatttaacctcagtatatcttcatttcctcacctgtaaaacaggcattgtaatagcacctactc--caga---gtgtaagaattagatgagtgactctatatagtg-ttagaacaatatctagcctataaagtaata
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37456427 152 +  50472720 atatatg---accttgggcaaataatttaacctcagcatatcttcatttcctcacctgtaaaatgggcattgtaatagcacctactc--taga---gtgtaagaattagatgagtgactctatatagtgcttagaccagtatctatcctataaagtagta
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91578811 151 +  98207768 atgcata---tccttgagcagattactaaatctcag--ggtcttaactttctcatctgtagaatgggtattctatcagag--gacac--caaacaggagtgagaattaagtgggCGACTCAGTCTAATGGCTGCGACTGTATTTGGACCATTACTTGATA
i mm10.chr16                C 0 I 697
s canFam3.chr31              28067617 155 +  39895921 CTGTATACTTATAGtgggcaaattatttagtcttattatgccttagtttcctcatttgtaaaatgggcattataacatcacctaccccacaga---gtatgagaaatgtatgactg--tgtgtatagtgcttcgaatagtacttggcccataaagtgcta
i canFam3.chr31             I 233 C 0

a score=443999.000000
s hg38.chr21_GL383581v2_alt     51413 130 +    116689 tataaaagttagctattactATGAATATTAATAGTTCAAGCAAATCTGTACAGTAAAAGATTTGAAACATGGCCTAG----AAATGCTCTCTGAAATAAAGTCATATTCACTTTACAAATAGAAAAGTATATTT
s panTro4.chr21              19555540 130 +  32799110 tataaaggttagctattactATGAATATTAATAGTTCAAGCAAATCTGTACAGTAAAAGATTTGAAACATGGCCTAG----AAATGCTCTCTGAAATAAAGTCATATTCACTTTACAAATAGAAAAGTATATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453422 133 +  48394510 tataaaagttagctattactATGAATATTAATAGTTCAAGCAAATCTGTACAGTAAAAGATTTGAAACATGCCCTAGAAATAAATGCTCTCTGAAATAAAGTCATATTCACTTTAC-AATAGAAAAGTATATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990088 129 +  32716333 tataaaagttagctattactATGAATATTAATAGTTCAAGCAAATCTGTACAGTGGAAGACTTGAAACATGCCCTAG----AAATGCT-TCTGAAATAAAGTCATATTCACTTTACAAATAGAAAAGTATATTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152751 130 - 198365852 tataaaagttggctatcattATGAATATTAATAGTTCAAGCAAATCTGCACAATAAAAGACTGGAAACATGCCCTAG----AAATGCTCTCTGAAATAAAGTCATATTCACTTTACAAATAAAAAAGAATATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178992662 130 - 192294377 tataaaagttggctatcattATGAATATTAATAGTTCAAGCAAATCTGCACAATAAAAGACTGGAAACATGCCCTAG----AAATGCTCTCTGAAATAAAGTCATATTCACTTTACAAATAAAAAAGAATATTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373126 130 - 180432695 tataaaaGTTGGCTATCATTATGAATATTAATAGTTCAAGCAAATCTGCACAATAAAAGACTGGAAACATGCCCTAG----AAATGCTCTCTGAAATAAAGTCATAttcactttacaaataaaaaacaatattt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31649235 130 -  90373283 tataaaagttggctatcattATGAATATTAATAGTTCAAGCAAATCTGCACAATAAAAGACTGGAAACATGCCCTAG----AAATGCTCTCTGAAATAAACTCATATTCACTTTACAAATAAAAAAGAATATTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37456579 128 +  50472720 tataaaagttagctattattATGAATATTAATAGTTCAAGCAAATCTGCAGGGTAAAAGACGTGAAACGTG--CTAG----AAATGCTCTCTGAAATAAAGTCATATTCACTTTACAAATAGAAAAGTATATTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28067772 130 +  39895921 tgtaaatgttagctgctattATGATTAGTCATAGGTCAAGAAAATCTGCACAACAAAAGATTTGAAATATGTGTCAG----AAATGCTCTCTGAAGCAAAAGCATATTCAATTTATAAACAGGAAAGTATATAT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=887823.000000
s hg38.chr21_GL383581v2_alt     51543 306 +    116689 Aggctgggtgtggtgactcacgcttgtaatcccagcactttggggggccgaggcgggt--------------------------------------------------------agatcacttgaggtcaggagtttgagaccagcctggccaacatggggaaaccctgtctctactaaaaatacaaaattagccaagtgtggtggtggatggctgtaatcccagctacttgggagattgagacaggagaatcacttgaacccaggaggcagaggttgccgtgggccaagactataccactgcactctagcct-----ggacgacagggcgaaactccatc--tt----aaaaaaaaaa------------gaaaaGTATATTTA
s panTro4.chr21              19555670 308 +  32799110 Aggctgggcgtggtgactcacgcttgtaatcccagtactttgggaggccgaggcgggt--------------------------------------------------------agatcacttgaggtcaggagtttgagaccagcctggccaacacggggaaaccctgtctctactaaaaatacaaaattagccaggtgtggtggtggatggctgtaatcccagctacttgggagactgagacaggagaatcacttgaacccaggaggcagaggttgccgtgggccaagactgcaccactgcactctagcct-----ggacgacagggcgaaactccatc--tt----aaaaaaaaaa----------aagaaaaGTATATTTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453555 309 +  48394510 Aggctgggcgtggtgactcatacttgtaatcccagtacttcgggaggctgaggcgggt--------------------------------------------------------ggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccaggcgtggtggtggatggctgtaatcccagctacttgggagactgagacaggagaatcacttgaacccaggaggcagaggttgccatgggccaagactgtaccactgcactctagcct-----ggacgacagggcgaaa-tccatctttt----aaaaaaaaaa----------aaaaaaaGTATATTTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990217 318 +  32716333 Aggctgggcgtggtgactcacgcttgtaatcccagtattttgggaggctgaggtgggt--------------------------------------------------------ggatcacttgaggtcaggagtttgagaccagcctggccaacatggcgaaaccctgtctctactgaaaatacaaaattagccaggcgtggtggtggatggctgtaatcccagctacttgggagactgagacaggagaatcacttgaacccaggaggcagaggttgccgtgggccaagactgtacgactgcactctagcct-----ggacaacagggtgaaactccatc--tt----aaaaaaaaaaaaaaaaagaaaagaaaaGTATATTTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185152881 305 - 198365852 Aggctgggcgtggtgactcacgcttgtaatcctagcattctgggaggccaaggtgggt--------------------------------------------------------ggatcacttgaggtcaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccgggcatggtggtggatggctgtaatcccagctacttaggagactgagacaggggaatcacttgaacccaggaggcagaggttgcagtgggccaagactgcaccactgcactctgccct-----ggacgacagggcgaaactccatc--tt----aaaaaaaaaa-------------aaaaGTATATTTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178992792 305 - 192294377 Aggctgggcgtggtgactcacgcttgtaatcctagcattctgggaggccaaggtgggt--------------------------------------------------------ggatcacttgaggtcaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccgggcatggtggtggatggctgtaatcccagctacttgggagactgagacaggggaatcacttgaacccaggaggcagaggttgcagtgggccaagactgcaccactgcactctaccct-----ggacgacagggcgaaactccatc--tt----aaaaaaaaaa-------------aaaaGTATATTTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373256 358 - 180432695 aggctgggcgtggtgactcacgcttgtaatcctagcattttgggaggccaaggtgggtggatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggatcacttgaggtcaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccgggcatggtggtggatggctgtaatcccagctacttgggagactgagacaggggaatcacttgaacccaggaggcagaggttgcagtgggccaagactgcaccactgcactctaccct-----ggacgacagggcgaaactccatc--tt-------aaaaaaa-------------aaaagtNTATTTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31649365 309 -  90373283 Aggctgggcgtgttgactcacgcttgtaatcctagcattttgggaggccaaggtgggt--------------------------------------------------------ggatcacttgaggtcaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccgggcatggtggtggatggctgtaatcccagctacttgggagactgagacaggggaatcacttgaacccaggaggcagaggttgcagtgggccaagactgcaccactgcactctaccct-----ggacgacagggcgaaactccatc--ttaaaaaaaaaaaaaa-------------aaaaGTATATTTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37456707 321 +  50472720 Aggccaggcatggtggctcacgcttgtaatcccatcacttagggaggccaaggcaggt--------------------------------------------------------ggatcacttgaggtcaggggtttgagaccagcctggccaacatggtgaaatcctgtctctactaaaaatacagaattagctgggcgtgatggcaggtgcctataattgcagctacgtgggaggctgaggcaggagaatggcttgaa-ccaggaggtggaggttgcaacagaccaagactgcaccactgcactctagcctaaggagggcaatagggcgaaactccatc--tt----aaaaaaaaaa-aaaaaaaaaaagaaaaGCATATTTA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28067902   0 +  39895921 C

a score=121840.000000
s hg38.chr21_GL383581v2_alt     51849 35 +    116689 AATGAGTAATGCTGTTGAAATAGAAAGATGAAATT
s panTro4.chr21              19555978 35 +  32799110 AATGAGTAATGCTGTTGAAATAGAAAGATGAAATT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453864 35 +  48394510 AATGAGTAATGCTGTTGAAATAGAAAGATGAAATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990535 35 +  32716333 AATGAGTAATGCTGTTGAAATAGAAAGATGAAATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185153186 35 - 198365852 AATTAGTAAAGCTGTTGAAATAGAAAGATGAAATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178993097 35 - 192294377 AATTAGTAAAGCTGTTGAAATAGAAAGATGAAATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373614 35 - 180432695 AATTAGTAAAGCTGTTGAAATAGACAGATGAAATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31649674 35 -  90373283 AATTAGTAAAGCTGTTGAAATAGAAAGATGAAATT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37457028 35 +  50472720 AATGAGCAATGCTGTTGAAACAGCAAGATGAAATT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28067902 35 +  39895921 AATGAGCACTGCTGTACAAATAAAAAGATGAAATC
i canFam3.chr31             C 0 I 195
e mm10.chr16                 91578962 697 +  98207768 I

a score=137673.000000
s hg38.chr21_GL383581v2_alt     51884 37 +    116689 CACAATCAAGAAATTTATCAATATTTACTAGTTCTTT
s panTro4.chr21              19556013 37 +  32799110 CACAATCAAGAAATTTATCAATATTTACTAGTTCTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453899 37 +  48394510 CACAATCAAGAAATTTATCAATATTTACTAGCTCTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990570 37 +  32716333 CACAATCAAGAAATTTATCAATATTTACTAGTTCTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185153221 37 - 198365852 CACAACCAAGAAATTTATCAATATGTACTAGTTCTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178993132 37 - 192294377 CACAACCAAGAAATTTATCAATATGTACTAGTTCTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373649 37 - 180432695 CACAACCAAGAAATTTATCAATATGTActagttcttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31649709 37 -  90373283 CACAACCAAGAAATTTATCAATATGTACTAGTTCTTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37457063 37 +  50472720 CATAATCAAGAAATTTATCAATATGTACTAGTTCTTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068132 37 +  39895921 CACAATTGAGAAATTTCTCATTGTGTACTAGTTCTTT
i canFam3.chr31             I 195 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=884823.000000
s hg38.chr21_GL383581v2_alt     51921 294 +    116689 AAATATTAAGATACAATTggctgggagcggt-ggttcatgcctgtaatcccaacactttgggaggccaaggtgggtagatcgtctgagatcaggacttcaagaccagcttggccaacatggtgaaaccctgtctctactaaaaatacaaaaaatt-agctgggagtcgtggcaggcggctataatcccagctattcgggaagctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagactgtgccattgcactccagcctgggcgacaagagtgaaac
s panTro4.chr21              19556050 294 +  32799110 AAATATTAAGATACAATTggccgggagcggt-ggttcatgcctgtaatcccaacactttgggaggccaaggtgggtagattgtctgagatcaggacttcaagaccagcttggccaacatggtgaaaccctgtctctactaaaaatacaaaaaatt-agccgggagtcgtggcaggcggctataatcccagctattcgggaagctgaggcagaagaatcgcttgaacccgggaggcagaggttgcagtgagccgagactgtgccattgcactccagcctgggtgacaagagtgaaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34453936 293 +  48394510 AAATATTAAGATACAATTggctgggagcggt-ggttcatgcctataatcccaacactttgggaggccaaggtgggtggaccgtctgagatcaggacttcaagaccagcttggccaacatggtgaaaccctgtctctactaaaaatacaaaaaatt-agctgggagtggtggcaggcggctataatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggcag-ggttgcagtgagccgagactgcgccattgcactccagcctgggctacaagagtgaaat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990607 294 +  32716333 AAATATTAAGATACAATTggctgggagcggt-ggttcatgcctataatcccaacactttgggaggccaaggtgggtggatcgtctgagatcaggacttcaagaccagcttggccaacatggtgaaaccctgtctctactaaaaatacaaaaaatt-agctgggagtggtggcaggcggctataatcccagctattcgggaagctgaggcaggagaatcgcttgaacccgggaagcagaggttgcagtgagccaagactgcgccattgcactccagcctgggtgacaagagtgaaac
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185153258 295 - 198365852 AAATATTAAGATACAATTGACTGGGAATTACAggttcatgcctgtaatcccaacactttgggaggccaaggcaggtggatcgtctgaggtcaggacttcaagaccagcttggccaacatggtgaaaccccatctctactaaaaatacaaaaaatt-agctgggagtggtggcagatggctataatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggcagagattgcagtgagccaagactatgccattgcactacagcctgggcgagaagagtgaaac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178993169 295 - 192294377 AAATATTAAGATACAATTGACTGGGAATTACAggttcatgcctgtaatcccaacactttgggaggccaaggcaggtggatcgtctgaggtcaggacttcaagaccagcttggccaacatggtgaaaccccatctctactaaaaatacaaaaaatt-agctgggagtggtggcagatggctataatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggcagagattgcagtgagccaagactatgccattgcactacagcctgggcgagaagagtgaaac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373686 295 - 180432695 aaatattaagaTACAATTgactgggagtggt-ggttcatgcctgtaatcccaacactttgggaggccaaggcaggtggatcgtctgaggtcaggacttcaagaccagcttggccaacatgttgaaaccccatctctacaacaaatacaaaaaattaagctgggagtggtggcagatggctataatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggcagagattgcagtgagccaagactacgccattgcactacagcctgggcgagaaGAGTGAAac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31649746 294 -  90373283 AAATATTAAGATACAATTgactgggagtggt-ggttcatgcctgtaatcccaacactttgggaggccaaggcaggtggatcgtctgaggtcaggacttcaagaccagcttggccaacatggtgaaaccccatctctactaaaaatacaaaaaatt-agctgggagtggtggcagatggctataatcccagctattcgggaagcagaggcaggagaatcgcttgaacccaggaggcagagattgcagtgagccaagactacgccattgcactacagcctgggcgacaagagtgaaac
i chlSab2.chr2              C 0 I 7
s calJac3.chr21              37457100 293 +  50472720 AAATATTAAGATACAATCgactgggctcggt-ggttcacgcctgtaatcccaacagtttgggaggccaaggcgggtggatcctctgagttcagaagttcaagatcagcttggccaacatggtgaaaccctgtctctacta-aaatacaaaaaatt-agctgggcatggtggcaggctcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctaagattgtgccattgcattccagcctggacaacaggagcaaaac
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28068169   0 +  39895921 C

a score=-567.000000
s hg38.chr21_GL383581v2_alt     52215 11 +    116689 tccaactc-aa----a
s panTro4.chr21              19556344 11 +  32799110 tccaactc-aa----a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454229 15 +  48394510 tccaactc-aaaaaga
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990901 13 +  32716333 tccaactc-aaaa--a
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185153553 11 - 198365852 -gcgtctcaaa----a
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178993464 10 - 192294377 -gcgtctc-aa----a
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373981  8 - 180432695 -gcgtctc-------a
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37457393  8 +  50472720 tctgtctc--------
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28068169  0 +  39895921 C
e chlSab2.chr2               31650040  7 -  90373283 I

a score=484252.000000
s hg38.chr21_GL383581v2_alt     52226 147 +    116689 aaaaaaaaaaaaaaTACACTCAACAATAGTAAAGCCTTTACAAAC--AATATTTCCCTACATACCTTACAGAAATGGCAATTTATCCCTATTTTCACTATAGAAACTGTAAAGCTCATGGATCA-CTTCAACtgc-taaagtaaataagca
s panTro4.chr21              19556355 147 +  32799110 aaaaaaaaaaaaaaTACACTCAACAATAGTACAGCCTTTACAAAC--AATATTTCCCTACATACCTTACAGAAATGGCAATTTATTCCTATTTTCACTATAGAAACTGTAAAGCTCATGGATCA-CTTCAACtgc-taaagtaaataagca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454244 148 +  48394510 aaaaaaaaaaaaGATACACTCAATGATAGTACAGCCTTTACAAAC--AATATTTCCCTACATACCTTACAGAAATGGCAATTTATTCCTATTTTCACCATAGAAACTGTAAAGTTCATGGATCACCTTCAACtgc-taaagtaaataagca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19990914 147 +  32716333 aaaaaaaaaaaaaaGATACTCAACGATAGTACAGCCTTTACAAAC--AATATTTCCCTACATACTTTACAGAAATGGCAATTTATTCCTATTTTCACTATAGAAACTGTAAAGTTCATGGATCA-CTTCAACtgc-taaagtaaataagca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185153564 147 - 198365852 aaaaaaaaaaaaGATACACTCAACGAGAGTATAGCCTTTACAAAC--AATATTTCCCTACATACCTTAGAGAAATGGCAATTTATTCCTATTTTCACTATAGAAACTGTAAAGTTCATGGATCA-CTTCAAGtgc-taaagtaaataagca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178993474 147 - 192294377 aaaaaaaaaaaaGATACACTCAACGAGAGTATAGCCTTTACAAAC--AATATTTCCCTACATACCTTAGAGAAATGGCAATTTATTCCTATTTTCACTATAGAAACTGTAAAGTTCATGGATCA-CTTCAAGtgc-taaagtaaataagca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167373989 146 - 180432695 aaaaaaaaaaaagatacactcaACGAGAGTACAGCCTTTACAAAC--AATATTTCCCTACATACCTTAGAGAAATGGCACTTTATTCCTA-TTTCACTACAGAAACTGTAAAGTTCATGGATCA-CTTCAAGTGC-TAAAGTAAATAAGCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31650047 142 -  90373283 aaaaaaagaaaaGATACACTCAACGAGAGTACAGCCTTTACAAAC--AATATTTCCCTACATACCTTAGAGAAATGGCAATTTATTCCTATTTTCACTATAGAAACTGTAAAGTTCATGGATCA-CTTCAAGTGC------taaataagcg
i chlSab2.chr2              I 7 C 0
s calJac3.chr21              37457401 145 +  50472720 --aaaaaaaaaaGATACAGTCAACAAGAGTACAGCCTTTGCAAAC--ACCATTTCCCTACATACTTTACGGAAATGGCAATTTATTCCTGTTTTCACTATAGAAACTGTAAAGTTCATGCATCT-CTTCAACtgc-taaagtaaataagca
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068169 142 +  39895921 AAAAAAAAAACACACAAAACCAATGACTGCACAACCTTTACAAACTTCCTACTTCCCTACACACCTTCCAGAAATGATAATTTATGCCCATTTTCATAACAGAAACTGGAAAGTTC---------CACCAGTTGCTTGAAGTCACTAAGTA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=1045348.000000
s hg38.chr21_GL383581v2_alt     52373 353 +    116689 ggaagccattaacctgaggctatctccctactctgagt---tcctgtgtgaccccaacccaccccccggaacctaacttacgtaaacgaactgaaacctagggttata-ttttttaataaatagctgaattttagtcaatcacaaacggctaagctttagccaatcccaagcagccaactgatgagaccatgcacaaataagacaaacatatagctacagacaatctaaa---------------------------------------------------------------------aatttcttgtctttgccttgtgttcagcctacagc-tgctcatgctgctgggtgaagctctccgaacctcttcttgg-------------------------------tttgctcaaattgctaatttatctaaagtttttctttaaca-TAACTAT-GGA
s panTro4.chr21              19556502 353 +  32799110 ggaagccattaacctgaggctatctccctactctgagt---tcctgtgtgaccccaacccaccccccggaacctaacttacgtaaacgaactgaaacctagggttata-ttttttaataaatagctgaattttagtcaatcacaaacagctaagctttagccaatcccaagcagccaactgatgagaccatgcacaaataagacaaacatacagctacagacaatctaaa---------------------------------------------------------------------aatttcttgtctttgccttgtgttcagcctacagc-tgctcatgctgctgggtgaagctctccgaacctcttcttgg-------------------------------tttgctcaaattgctaatttatctaaagtttttctttaaca-TAACTAT-GGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454392 384 +  48394510 ggaggccattaacctgagactatctccctactctgagt---tcttgtgtgaccccaaccccccaccc-caacctaatttatgtaaacaaactgaaacctagggttatatttttttaataaatagctgaattttggtcaatcacaaacagctaagctttagccaatcccaagcagccaactgatgagaccatgcacaaataggacaaacatatagctacagacaatctaaa---------------------------------------------------------------------aatttcttgtctttgctttgtgttcagcctacacc-tgctcatgctgctgggtgaagctctctgaacctcttcttggttctgggtcctgcccaattcatgaatcattctttgctcaaattgctaatttatctaaagtttttctttaaca-TAACTAT-GGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19991061 381 +  32716333 ggaggccattaacctgaggctatctccctgctctgagt---tcctgtgtgaccccaaccccccgcc--gaacctagcttatgtaaacaaactgaaacctagggttatatttttttaataaatggctgaattttagtcaatcacaaacagctaagctttagccaatcccaagcagccagctgatgagaccatgcacaaataagataaacatatagctacagacaatctaaa---------------------------------------------------------------------aat---ttgtctttgctttgtgttcagcctacagc-tgctcatgctgctgggtgaagctctccgaacctcttcttggttctgggtcctgcccaattcatgaatcattctttgctcaaattgctaatttatctaaagtttttctttaaca-TAACTATGGGA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185153711 379 - 198365852 ggtggccattaacctgaggctatctccccactctgagt---tcctgtgtgacccca-----ccccctgcaacctaacttatgtaaacaaactgaaacctagggttatatttttgtaataaatagctgaattttagtcaatcacaaacagctaagctttagccaatcccaagcagccaactgatgagaccatgcacaaataagacaaacat--agctatagacaatctaaa---------------------------------------------------------------------aatttcttgtctttgctttgtgttcagcctacagcatgcaaatgctgctgggtgaagctctctgaacctcttcttcgttctgggtcctgcccaattcatgaatcattctttgctcaaattgttaatttatctaaagtttttctttaaca-TAACTAT-GGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178993621 379 - 192294377 ggtggccattaacctgaggctatctccccactctgagt---tcctgtgtgacccca-----ccccctgcaacctaacttatgtaaacaaactgaaacctagggttatatttttgtaataaatagctgaattttagtcaatcacaaacagctaagctttagccaatcccaagcagccaactgatgagaccatgcacaaataagacaaacat--agctatagacaatctaaa---------------------------------------------------------------------aatttcttgtctttgctttgtgttcagcctacagcatgcaaatgctgctgggtgaagctctctgaacctcttcttcgttctgggtcctgcccaattcatgaatcattctttgctcaaattgttaatttatctaaagtttttctttaaca-TAACTAT-GGA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167374135 378 - 180432695 GGTGGCCATTAACCTGAGGCTATCTCCCCACTCTGAGT---TCCTGTGTGACCCCA-----CCCCCTGCAACCTAACTTATGTAAACAAACTGAAACCTAGggttatatttttgtaataaatagcTGAATTTTAGTCAATCACAAACAGCTAAGCTTTAGCCAATCCCAAGCAGCCAACTGATGAGACCATGCACAAATAAGACAAACAT--AGCTATAGACAATCTAAA---------------------------------------------------------------------AATTTCTTGTCTTTGCTTTGTGTTCAGCCTACAGC-TGCTCATGCTGCTGGGtgaagctctctgaacctcttctTCGTTCTGGGtcctgcccaattcatgaatcattctttgctcaaattGTTAATttatctaaagtttttctttaaca-TAACTAT-AGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31650189 378 -  90373283 ggtggccattaacctgaggctatctccccactctgagt---tcctgtgtgacccca-----ccccctgcaacctaacttatgtaaacaaactgaaacctaggattatatttttgtaataaatagctgaattttagtcaatcacaaacagctaagctttagccaatcccaagcagccaactgatgagaccatgcacaaataagacaaacat--agctatagacaatctaaa---------------------------------------------------------------------aatttcttgtctttgctttgtgttcagcctacaac-tgctcatgctgctgggtgaagctctctgaacctcttcttcgttctgggtcctgcccaattcatgaatcattctttgctcaaattgttaatttatctaaagtttttctttaaca-TAACTAT-GGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37457546 441 +  50472720 ggaggccattaacctgaggctatctccctactgtgagttcctcctgtatgacccc-------------caacctaacttatgaaaacaaactgaaacctaaggatatatttttgtaataaatagctgaattttagccaatcacaaacagctaagctttagccaatcccaagcagccaactgatgagaccacgcaaaaataggac--acat--agctatagacaatctaaattctgtttttttcttttttattatttttttttcttaagtccattttctgttgttataacaagacaatctaaattcttaacttggctttctgttcagcctacagc-tgctcatgctgctgggtgaagctctctgaaactcttcttggttctgagtgctactcgattcatgaatcattctttgctcaaattgttaatttatctggagtttttctttaacaTTAACTAT-GGA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28068311   0 +  39895921 C

a score=96831.000000
s hg38.chr21_GL383581v2_alt     52726 28 +    116689 GACCTTTTAAGAAAATCAGTGACAGCAG
s panTro4.chr21              19556855 28 +  32799110 GACCTTTTAAGAAAATCAGTGACAGCAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454776 28 +  48394510 GATCTTTTAAGAAAATCAGTGACAGCAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19991442 28 +  32716333 GACCTTTTAAGAAAATCAGTGACAGCGG
i nomLeu3.chr25             C 0 I 108
s rheMac3.chr3              185154090 28 - 198365852 GACCTTTTAAGAAAATCAGTGACAGCAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178994000 28 - 192294377 GACCTTTTAAGAAAATCAGTGACAGCAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167374513 28 - 180432695 GACCTTTTAAGAAAATCAGTGACAGCAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31650567 28 -  90373283 GACCTTTGAAGAAAATCAGTGACAGCAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37457987 27 +  50472720 GACCTTTTAAG-AAATCAGTGACAGCAG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068311 27 +  39895921 GATTTTCCAAGGAAATCAGTAATAGTA-
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=81775.000000
s hg38.chr21_GL383581v2_alt     52754 33 +    116689 CCCACCCTTCTTACAGTCAGGGATAAAATGAGT
s panTro4.chr21              19556883 33 +  32799110 CCCACCCTTCTTACAGTCAGGGATAAAATGAGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454804 33 +  48394510 CCCACCCTTCTTACAGTCAGGGATAAAATGAGT
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185154118 31 - 198365852 CCCACCCTTCTT--AGTCAGGGATAAAATGAGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178994028 31 - 192294377 CCCACCCTTCTT--AGTCAGGGATAAAATGAGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167374541 31 - 180432695 CCCACCCTTCTT--AGTCAGGGATAAAATGAGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31650595 31 -  90373283 CCCACCCTTCTT--AGTCAGGGATAAAATGAGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37458014 33 +  50472720 CCCATCCTTCTTAGTGTCAGGGATAAAATGAGT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068338 24 +  39895921 ---------CTTAGAGTCAGGGACAGAGTGAGC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e nomLeu3.chr25              19991470 108 +  32716333 I

a score=7092.000000
s hg38.chr21_GL383581v2_alt     52787 2 +    116689 TT
s panTro4.chr21              19556916 2 +  32799110 TT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454837 2 +  48394510 TT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19991578 2 +  32716333 TT
i nomLeu3.chr25             I 108 C 0
s rheMac3.chr3              185154149 2 - 198365852 TT
i rheMac3.chr3              C 0 I 205
s macFas5.chr3              178994059 2 - 192294377 TT
i macFas5.chr3              C 0 I 317
s papAnu2.chr3              167374572 2 - 180432695 TT
i papAnu2.chr3              C 0 I 315
s chlSab2.chr2               31650626 2 -  90373283 TT
i chlSab2.chr2              C 0 I 311
s calJac3.chr21              37458047 2 +  50472720 CT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068362 2 +  39895921 TT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=44473.000000
s hg38.chr21_GL383581v2_alt     52789 14 +    116689 AAAACACACTTTCC
s panTro4.chr21              19556918 14 +  32799110 AAAACACACTTTCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454839 14 +  48394510 AAAACACACTTTCC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19991580 11 +  32716333 AAGATACAATT---
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185154356 14 - 198365852 aaaaCACACTTTCT
i rheMac3.chr3              I 205 C 0
s macFas5.chr3              178994378 14 - 192294377 aaaaCACACTTTCT
i macFas5.chr3              I 317 C 0
s papAnu2.chr3              167374889 14 - 180432695 aaaacacactttct
i papAnu2.chr3              I 315 C 0
s chlSab2.chr2               31650939 14 -  90373283 aaaaCACACTTTCT
i chlSab2.chr2              I 311 C 0
s calJac3.chr21              37458049 14 +  50472720 AAAACACACTTTCC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068364 14 +  39895921 AAAACACACTTCCC
i canFam3.chr31             C 0 I 401
e mm10.chr16                 91578962 697 +  98207768 I

a score=1334693.000000
s hg38.chr21_GL383581v2_alt     52803 454 +    116689 ggctgggcacagtggctcacgcctgtaataccagcactttgggaggctgaggtgggtggatcacctgaggtcaggaattcgagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaattatctgggcgtggtggcatgcacctgcagtcccagctacttaggaggctgagaaaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcaaggttctgtct---------------------caaaaaaaCACTTTCCTATAAGATTCCATGTGTATGaaatagatac--------agacagaaagtacattagtggctgcctagggctaggggaa-ggagtaatggggagtg---actgctaatgggtatggcagtgataaaaatattctcaaattggattgtgatgatggtagcataattctgtg
s panTro4.chr21              19556932 454 +  32799110 Agctgggcacagtggctcacgcctgtaataccagcactttgggaggctgaggtgggtggatcacctgaggtcaggaattcgagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaattatctgggcgtggtggcatgcacctgcagtcccagctacttaggaggctgagaaaggagaattgcttgaacctgggaggcagaggttgtagtgagccgagatcacgccactgcactccagcctgggcgacagagcaaggttctgtct---------------------caaaaaaaCACTTTCCtataagattccatgtgtatgaaatagatac--------agacagaaagtacattagtggctgcctagggctaggggaa-ggagtaatgaggagtg---actgctaatgagtatggcagtgataaaaatattctcaaattggattgtgatgatggtagcataattctgtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34454853 454 +  48394510 agctgggcgcggtggctcacaccagtaatctcagcactttgggaggctgaggtgggtggatcacctgaggtcaggaattcgagaccagcctgaccaatatggtgaaaccctatctctactaaaaatacaaaaattatctgggcatggtgacatgcacctgcagtcccagctacttaggaggctgagaaaggagaattgcttgaacctgggaggcagaggttgcagtgagacgagatcacaccactgcactccagcctgggtgacagagcaaggttctgtct---------------------caaaaaaaTACTTTCCtataagattccatgtgtatgaaatagatac--------agacagaaagtacattagtggctgcctagggctaggggaa-ggagtaatggggagtg---actgctaatgagtatggcagtgataaaaatattctcaaattggattgtggtgatggtagcataattctgtg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19991591 441 +  32716333 ggctgggagcggtggttcatgcctataatcccaacactttgggaggccaaggtgggtggatcgtctgagatcaggaattcaagaccagcctgaccaatatggtgaaaccccatctctagtaaaaatacaaaaattatctgggcgtggtggcatgcacctgcagtcccagctacttaggaggctgagaagggagaattgcttgaacctggaaggcagaggttgcagtgagccaagatgatgccactgtactccagcatgggcgacagagcaaggttctgtct---------------------caaaaaaaCAC-----------attccatgtgtatgaaatggatac--------agacagaaagtacattagtggctacctagggctagaag---ggagtaatggggagtg---actgctaatgggtatggcagtgataaaaatattctcaaattggattgtggtgatggtagtgtaattctgtg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185154370 462 - 198365852 ggctgggtacagtggctcatgcctgtaatcccagcaccttgggaggctgaggtgggtggatcacctgaggtcagaaattcgagaccagcctgaccaatatggtaaaatcccatctctattaaaaacacaaaaattatccgggcgtgttggcatgcacctgaaatcccagctacccaggaggctgagaaaggagaattgcttgaacctgggagggagaggttgcagtgagccaagatcatgccaccacactccagcctgggcaacagagcaaggctctgtct---------------------caaaaaaaCAGTTTCCGAtaagattccatgtgtatgaaatagatatatctatagagacagaaagtacattagtggctgcctagggctatgggaa-ggagtaatggggagtg---actgctagtgggtatggtggtgataaaaatattctcaaattggattgtggtgatggtagcataattctgtg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178994392 462 - 192294377 ggctgggtacagtggctcatgcctgtaatcccagcaccttgggaggctgaggtgggtggatcacctgaggtcagaaattcgagaccagcctgaccaatatggtaaaatcccatctctattaaaaacacaaaaattatccgggcgtgttggcacgcacctgaaatcccagctacccaggaggctgagaaaggagaattgcttgaacctgggagggagaggttgcagtgagccaagatcatgccaccacactccagcctgggcaacagagcaaggctctgtct---------------------caaaaaaaCAGTTTCCGAtaagattccatgtgtatgaaatagatatatctatagagacagaaagtacattagtggctgcctagggctatgggaa-ggagtaatggggagtg---actgctagtgggtatggtggtgataaaaatattctcaaattggattgtggtgatggtagcataattctgtg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167374903 462 - 180432695 ggctgggtacagtggctcatgcctgtaatcccagcaccttgggaggctgaggtgggtggatcacctgaggtcagaaattcgagaccagcctgaccaatatggtaaaaccccatctctattaaaaacacaaaaattatccaggcgtgttggcatgcacctgaaatcccagctacccaggaggctgagaaaggagaattgcttgaacctgggaggcagaggttgcagtgagccaagatcacgccaccacactccagcctgggcaacagagcaaggctctgtct---------------------caaaaaaacagtttCCTATAAGATTCCATGTGTATGAAATAGATatatctatagagacagaaagtacattagTGGCTGCCTAGGGCTATGGGAA-GGAgtaatggggagtg---actgctaatgggtatggtggtgataaaaatattctcaaattggattgtggtgatggtagcataattctgtg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31650953 462 -  90373283 ggctgggtacagtggctcatgcctgtaatcccagcaccttgggaggctgaggtgggtggatcacctgaggtcagaaattcgagaccagcctgaccaatatggtaaaaccccatctctattaaaaacacaaaaattatccgggcatggtggcatgcacctgcaatcccagctacccaggaggctgagaaaggagaattgcttgaacctgggaggcagaggttgcagtgagccaagatcacgccaccacactccagcctgggcaacagagcaaggctctgtcc---------------------caaaaaaaCAGTTTCCTACAAgattccatgtgtatgaaatagatatatctatagagacagaaagtacattagtggctgcctagggctacgggaa-ggagtaatggggagtg---actgctaatgggtatggtggtgataaaaatattctcaaattggattgtggtgatggtagcataattctgcg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37458063 478 +  50472720 AGTTgggcacagtggctcacacctgtaat-ccagcactttgggaggacgaggtgggtagattacctgaggtcaggacttcgaaacctgcctgaccaatatggtgaaaccccatctctactataagtagaaaaattatccggg--------catgcacctgcagtcccagctacatgggaggctaagacaaaagaactgcttgaacctgggaggcagaggttgcagtgagtcaagatcatgccactgcactccagcctgggcaacagaggcagactccatctcaaaaaaaacaacaacaacaacaaaaaaaCACTTTCCtataagattccatgtgtatgaaatagatatatctatggagacagaaagtacattagtggctgactagggctaggggaagggagtaatggggagtgacaactgctaatgggtatgggagtgataaaaatactctcaagttggattgtggtgatggtagcacaattctgtg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28068378 401 +  39895921 I

a score=545395.000000
s hg38.chr21_GL383581v2_alt     53257 149 +    116689 aaaatactaaaaacactgaactgcatattttaaatggctgaattatatggtatgcaaattatatctcaatgaagctatctttaaaaaaGCATTTTCCTTCAGATATGCTTCATACCAGAATTATGTGCTCTAGTAGTATTTTTAATTAA
s panTro4.chr21              19557386 149 +  32799110 aaaatactaaaaacactgaactgcatattttaaatggctgaattatatggtatgcaaattatatctcaatgaagctatctttaaaaaaGCATTTTCCTTCAGATATGCTTCATACCAGAATTATGTGCTCTAGTAGTATTTTTAATTAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34455307 149 +  48394510 aaaatactaaaaacactgaactgcatattttaaatggctgaattatatggtatgcaaattacatctcaatgaagctatttttaaaaaaGCATTTTCCTTCAGATATGCTTCATACCAGAATTATGTGCTCTAGTAGTATTTTTAATTAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19992032 149 +  32716333 aaaatactaaaaacactgaactgcatattttaaatggctgaattatatggtatgcaaattacatctcaatgaagctatttttaaaaaaGCATTTTCCTTCGAATATGCTTCATACCAGAATTATGTGCTCTAGTAGTATTTTTAATTAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185154832 149 - 198365852 aaaatactaaaaacattcaactgcatattttaaatggctgaattatatggcatgcaaattacatctcgatgaagctatttttaaaaaaGCATTTTCCTTCAGATACGCTTCATACCAGAACTATGTGCTCTAGTAGTATTTTTAATTAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178994854 149 - 192294377 aaaatactaaaaacattcaactgcatattttaaatggctgaattatatggcatgcaaattacatctcgatgaagctatttttaaaaaaGCATTTTCCTTCAGATACGCTTCATACCAGAACTATGTGCTCTAGTAGTATTTTTAATTAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167375365 149 - 180432695 aaaatactaaaaacattcaactgcatattttaaatggctgaattatatggtatgcAAATTACATCTCGatgaagctatttttaaaaaagcattttcctTCAGATACACTTCATACCAGAACTATGTGCTCTAgtagtatttttaattaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31651415 149 -  90373283 aaaatactaaaaacattcaactgcatattttaaatggctgaattatatggtatgcaaattacatctcgatgaagctatttttaaaaaaGCATTTTCCTTCAGATACGCTTCATACCAGAACTATGTGCTCTAGTAGTATTTTTAATTAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37458541 149 +  50472720 aaaatacgaaaaacactgaactgcatactttaaatggctgaattatatggtatgcaaattacaactcaataaagctatttttaaaaaaGCATTTTCCTTCAGATAAGCTTCATACCAGAACTGTGTGCTCTAGCAGTATTTTTAATTAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28068779 149 +  39895921 aaaaaaataaaaacactgaaacatacactttaaaggggtaaattacttgaaatgcaaattatatcttaataaagccgtttttaataaAGCACTTTCCTTTACATGAGGTTCATACTAGAACTGTGTCCTCCATTAGTATTTTTAATTAA
i canFam3.chr31             I 401 I 183
e mm10.chr16                 91578962 697 +  98207768 I

a score=30132.000000
s hg38.chr21_GL383581v2_alt     53406 9 +    116689 CTAAAAAAC
s panTro4.chr21              19557535 9 +  32799110 CTAAAAAAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34455456 9 +  48394510 CTAAAAAAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19992181 9 +  32716333 CTAAAAAAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185154981 9 - 198365852 CTAAAAAAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178995003 9 - 192294377 CTAAAAAAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167375514 9 - 180432695 ctaaaaaac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31651564 9 -  90373283 CTAAAAAAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37458690 9 +  50472720 CTAAAAAAC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28068928 183 +  39895921 I

a score=1416393.000000
s hg38.chr21_GL383581v2_alt     53415 459 +    116689  
s panTro4.chr21              19557544 459 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34455465 460 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19992190 456 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185154990 453 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178995012 453 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167375523 453 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31651573 453 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37458699 440 +  50472720  
i calJac3.chr21             C 0 I 214
s canFam3.chr31              28069111 615 +  39895921  
i canFam3.chr31             I 183 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=208207.000000
s hg38.chr21_GL383581v2_alt     53874 75 +    116689 CTGTATGAAGAGTATACATATGTG--TTCAGTCTTGCCCTTAAAAAACTCCCCCTGTACCCATGACTTAAAAATTAC
s panTro4.chr21              19558003 75 +  32799110 CTGTATGAAGAGTATACATATGTG--TTCAGTCTTGCCCTTAAAAAACTCCCCCTGTACCCGTGACTTAAAAATTAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34455925 75 +  48394510 CTGTATGAAGAGTATACATATGTG--TTCAGTCTTGCCCTTAAAAAACTCCCCCTATATCCGTGACTTAAAAATTAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19992646 74 +  32716333 CTGTATGAAGAGTATACATATGTG--TTCAGTCTTGCCCTTAAAAAACTCCCCC-GTACCCGTGACTTAAAAATTAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185155443 76 - 198365852 CTGTATGAAGGGTACACATATATATCTTCAGTCTTGCCCTTAAAAAACTCCCCCTGTACCCGTGACTT-AAAATAAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178995465 76 - 192294377 CTGTATGAAGGGTACACATATATATCTTCAGTCTTGCCCTTAAAAAACTCCCCCTGTACCCGTGACTT-AAAATAAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167375976 76 - 180432695 CTGTATGAAGGGTACACGTATATATCTTCAGTCTTGCCCTTAAAAAACTCCCTCTGTACCCGTGACTT-AAAATAAC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31652026 75 -  90373283 CTATATGAAGGGTACACATATATATCTTCAGTCTTGCCCTT-AAAAACTCCCCCTGTACCCGTGACTT-AAAATAAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37459353 77 +  50472720 CTGTATGAAGGGTACACATATATGTCTTCAGTCTTGAACTTAAAAAACTCCCCTCGTACCTGTAACTTAAAAACTAC
i calJac3.chr21             I 214 C 0
s canFam3.chr31              28069726 48 +  39895921 CTGCATGAAGGCTACAGTCATGTC--TTCAGTCTTACCCCTAAAAATCTC---------------------------
i canFam3.chr31             C 0 I 16
e mm10.chr16                 91578962 697 +  98207768 I

a score=815942.000000
s hg38.chr21_GL383581v2_alt     53949 302 +    116689 AGGATTggctgggcatggtggctcacacctgtaatcccagcactttgggagaccaagatgggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact-------aaaaaaatacaaaaattagctgggtgtggtggcgtgcacctgtaatcccagctacttgggaggctgagacaggcaaattacttgaacctgtgaggcggaggttgcagtgagccgagatcacaccactgcactccatcctgggtgacagagtgagactc-cgtctcaaaaa---aaaaaaa
s panTro4.chr21              19558078 302 +  32799110 AGGATTggctgggcatggtggctcacacctgtaatcccagcactttgggagaccaagatgggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact-------aagaaaacacaaaaattagctgcgtgtggtggcgtgcacctgtaatcccagctacttgggaggctgagacaggcaaattacttgaacctgtgaggcggaggttgcagtgagccgagatcacaccactgcactccatcctgggtgacagagcgagactc-cgtctcaaaaa---aaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34456000 296 +  48394510 AGGATTggctgggcatggtggctcacacctgtaatcccagcactttgggagaccaagatgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact-------aaaaaaatacaaaaattagctgggtgtggtggcatgcacctgtaatcccagctacttgggaggctgagacaggcgaattacttgaacctgtgaggcggaggttgcagtgagccgagatcacaccactgcactccatcctgggcaacagagcgagactc-tgtct---------aaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19992720 299 +  32716333 AGGATTggctgggcacggtggctcacacctgtaatcctagcactttgggatactaagatgggcagatcacttaaggtcaggagttcaagatcagcctggacaacatggtgaaaccctgtctctact-------aaaaaattacaaaaattagctgggtgtggtggcatgcacctgtaatcccagctacttgggaggctgagacaggcgaattacttgaacctgtgaggtggaggttgcagtgagccaagatcacaccactgcactccatcctgggtgatagagaaagactc-tgtctcaa------aaaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185155519 298 - 198365852 AGATTTggctgagtgcggtggctcacacctgtaatcccagcagtttgggaggccaatatgggtggatcacttgaggtcaggagtttgagaccagcctggaaaacatggtgaaaccctgtctctact-----aaaaaaaaatacaaaaattagctgggcatcttggcacgcacctctaatcccagctacttgggaggctgagacaggcgaattacttgaacctggcaagcggaggttgcaaagagccaagatcacaccactgcactccaccctgggcgatagagtgagactc-tatctc--------c-aaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178995541 299 - 192294377 AGGTTTggctgggtgcggtggctcacacctgtaatcccagcagtttgggaggccaatatgggtggatcacttgaggtcaggagtttgagaccagcctggaaaacatggtgaaaccctgtctctact-----aaaaaaaaatacaaaaattagctgggcatagtggcacgcacctctaatcccagctacttgggaggctgagacaggcgaattacttgaacctgggaagcggaggttgcaaagagccaagatcacaccactgcactccaccctgggcgatagagtgagactc-tatctc--------caaaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167376052 296 - 180432695 Aggtttggctgggtgcggtggctcacacctgtaatcccagcagtttgggaggccgatatgggtggatcacttgaggtcaggagtttgagaccagcctggacaacatggtgaaaccctgtctctact---aaaaaaaaaaatacaaaaattagctgggcatagtggcacgcacctctaatcccagctacttgggaggctgagacaggcgaattacttgaacctgggaagtggaggttgcaaagagccaagatcacaccactgcactccaccctgggcgata-----cgagtc-tatctc--------caaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31652101 301 -  90373283 AGGTTTggctgggtgcggtggctcacacctgtaatcccagcaatttgggaggccaagatgggtggatcacttgaggtcaggagttcgagaccagcctggacaacatggtgaaaccctgtctctact---aaaaaaaaaaatacaaaaattagctgggcatagtggcaagcacctctaatcccagctacttgggaggctgagacaggcaaattacttgaacctgggaagtggaggttgcagtgagccaagatcacaccactgcactccaccctgggcgatagagtgagactc-tatctc--------caaaaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37459430 301 +  50472720 AGGACTggccatgcccggtggctcacacctgtaatcccaacactttgggaggccaaggtgggctgatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactctgtctctactaaaaaaaaaaaaaatacaaaaattagccaggcatggtggcatgcacctataatcccagctacttaagaggctaagacaggagaattaattgaacctaggaggcagtggttgcagtgagccaagatcatgcca------------ctgggcaacaaagcaagactcttgtcttcaaaaaagaaaacga
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91578962 697 +  98207768 I
e canFam3.chr31              28069774  16 +  39895921 I

a score=560184.000000
s hg38.chr21_GL383581v2_alt     54251 176 +    116689 aaaaa--TTACAGGATTAGGTTGGAGAGAGAAGGTGTCAATGAAACGAAAGATTATCTACTGGCAATCCATAGATTATCAGATAAGGggtctataccccttatctgaaatccctggggcaagatatattttgggattcagaattcttcaggtttaagaacagtaagggaaagcacata
s panTro4.chr21              19558380 178 +  32799110 aaaaaaaTTACAGGATTAGGTTGGAGAGAGAAGGTGTTAATGAAACGAAAGATTATCTACTGGCAATCCATAGATTATCAAATAAGGggtctataccccttatctgaaatccctggggcaagatatattttgggaatcagaattcttcaggtttaagaacagtaagggaaagcacata
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34456296 176 +  48394510 aaaaa--TTACAGGATTAGGTTGGAGAGAGAAGGTGTTAATGAAACGAAAGATTATCTACTGGCAATCCATAGATTATCAAATAAGGggtctataccccttatctgaaatccctgggacaagatatattttgggattcagaattcttcaggtttaagaacagtaagggaaagcacata
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19993019 176 +  32716333 aaaaa--TTACAGGATTAGGTTGGAGAGAGAAGGTGTTAATGAAACGAAAGATTATCTACTGGCAATCCATAGATGATCAAATAAGGGGTCTATGCcccttatctgaaatccctggggcaagatatattttgggattcagaattcttcaggtttaagaacagtaagggaaagcacgta
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185155817 172 - 198365852 aaaaa--GTACAGGATTAGGTTGGACAAAGAAGGTGTTTATGAAAAGAAAGAT----TACTGATAATCCATAGATTATCAGATAAGGGGTCTATGCcccttatctgaaatccctggggcaagatatattttgggattcagaattcttcagatttaagaacagtaaggcaaagcacata
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178995840 172 - 192294377 aaaaa--GTACAGGATTAGGTTGGACAAAGAAGGTGTTTATGAAAAGAAAGAT----TACTGATAATCCATAGATTATCAGATAAGGGGTCTATGCcccttatctgaaatccctggggcaagatatattttgggattcagaattcttcagatttaagaacagtaaggcaaagcacata
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167376348 172 - 180432695 aaaaa--gtacaagattaGGTTGGACAGAGAAGGTgtttatgaaaagaaagat----tACTGATAATCCATAGATTATCAGATAAGGGGTCTATGCCCCTTATCTGAAATCCCTGGGGCAAGATGTATTTTGGGATTCAGAATTCTTCAGATTTAAGAACAGTAAGGCAAAGCACATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31652402 172 -  90373283 aaaaa--GTACAGGATTAGGTTGGACAGAGAAGGTGTTTATGAAAAGAAAGAT----TACTGATAATCCATAGATTATTAGATAAGGGGTCTATGCcccttatctgaaatccctggggcaagatatattttgggattcagaattcttcagatttaagaacagtaaggcaaagcacata
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37459731 176 +  50472720 aaaaa--TTACAGGATTAGGTTGGAGAGAGAAGGTGTTAAGGAAAAGAAAGAGTATCCACTGATAATCCATAAATTACTAGATAAGGggtctataccccttatctgaaatccctggggcaagatatattttgtaattcagagttcttcagatttaagaacagtaagggaaagcacaca
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28069790 139 +  39895921 AAAAA--TTCCAGG-CTGGGTTGGAGAGAGGACATCTCAGTGGAA------------TACT------------------------GGGGTTTATacccctgagctgaaactctcgaggcaaggtatgttttggaattcagaaattttcacatgtaggaatggtgatgcagggcagaaa
i canFam3.chr31             I 16 C 0
e mm10.chr16                 91578962 697 +  98207768 I

a score=1427491.000000
s hg38.chr21_GL383581v2_alt     54427 398 +    116689 tactacatagcaccgccagctgggtatagacaagcacatcctataatctaatatatctatt-----ttcattcctacaataaaaca-tttgaatacttacactaaatgggataaagaaaatagtgagctccatgtcagtttaggtcaggttttgctgccagactagttataaataacttgattttcagcattttgtg-----gattttagaattgtatataaggg------agtgtacacctgTACTGGTTTCTCA-CTTTTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTGT-CTAAGGTAAAGAAGGAAAGCAGAAAGTCTGGAGACAGCTGAGAGGTACC-AGCTTTGTCAGTGGCTTGGATTTCCTAACCAGGGCTATCCTACTGCACTAAGTGTT
s panTro4.chr21              19558558 398 +  32799110 tactacatagcaccgccagctgggtatagacaagcacatcctataatctaatatatctatt-----ttcattcctacaataaaaca-tttgaatacttacactaaatgggataaagaaaatagtgagctccatgtcagtttaggtcaggttttgctgccagactagttataaataacttgattttcagcattttgtg-----gattttagaattgtatataaggg------agtgtacacctgTACTGGTTTCTCA-CTTTTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTGT-CTAAGGTAAGGAAGGAAAGCAGAAAGTCTGGAGACAGCTGAGAGGTACC-AGCTTTGTCAGTGGCTTGGATTTCCTAACCAGGGCTATCCTACTGCACTAAGTGTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34456472 396 +  48394510 tactacatagcatcaccagctgggtatagacaag--catcctataatctaatatatctatt-----ttcattcctacaataaaaca-tttgaatacttacactaaatgggataaagaaaatagtgagtcccatgtcagtttaggtcaggttttgctgccaaagtagttataaataacttgattttcagcattttgtg-----gattttagaatggtatataaggg------agtgtacacctgTACTGGTTTCTCA-CTTTTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTGT-CTAAGGTAAGGAAGGAAAGCAGAAAGTCTGGAGACGGCTGAGAGGTACC-AGCTTTGTCAGTGGCTTGGATTTCCTAACCAGGGCTATCCTACTGCACTAAGTGTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19993195 396 +  32716333 tactacatagcaccgccagctgggtatagacaag--catcctataatctaatatatctatt-----ttcattcctacaataaaaca-tctgaatacttacactaaatgggataaagaaaatagtgagccccatgtcattttaggtcaggttttgctgccaaagtagttataaataacttgatttttagcattttgtg-----gattttagaattgtatataaggg------actgtacacctgTAATGGTTTCCCA-CTTTTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTGT-CTAAGGTAAGGAAGGAAAGCGGAAATTCTGGAGACGGCTGAGAGATACC-AGCTTTGTCAGTGGCTTGGATTTCCTAACCAGGGCTATCCTACTGCACTAAGTGTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185155989 395 - 198365852 tactgcatagcactgccagctgggtatggacaag--catcctataacctaatacatctatt-----ttcattcctacaacaaaaca-tttgaatactgacactaaatgggataaaaaaaacagtgagccctgtgtcagtttaggtcaggttttgctgccaaactagtaataaataatttgattttcagcattttgtg-----gattttagaattatatataaggg------actgtacacctgTACTGGTTTCTCA-CTTGTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTATCCTAAGGTAAGGAAGGAAAGCAGAAAGTCTGGAGATGGCTGAGAGGTACC-GGCTTTGTCAGTGGCTTGGATTTCCTAACCAGAGCTATCCTACTGCACT--GTGTT
i rheMac3.chr3              C 0 I 316
s macFas5.chr3              178996012 395 - 192294377 tactgcatagcactgccagctgggtatggacaag--catcctataacctaatacatctatt-----ttcattcctacaacaaaaca-tttgaatactgacactaaatgggataaaaaaaacagtgagccctgtgtcagtttaggtcaggttttgctgccaaactagttataaataacttgattttcagcattttgtg-----gattttagaattatatataaggg------actgtacacctgTACTGGTTTCTCA-CTTGTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTATCCTAAGGTAAGGAAGGAAAGCAGAAAGTCTGGAGATGGCTGAGAGGTACC-GGCTTTGTCAGTGGCTTGGATTTCCTAACCAGAGCTATCCTACTGCACT--GTGTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167376520 395 - 180432695 TACTGCATAGCACTGCCAGCTGGGTATGGATAAG--CATCCTATAACCTAATACATCTATT-----TTCATTCCTACAACAAAACA-TTTGAATACTGACACTAAATGGGATAAAGAAAACAGTGAGCCCTATGTCAGTTTAGGTCAGGTTTTGCTGCCAAACTAGTTATAAATAACTTGATTTTCAGCATTTTGTG-----GATTTTAGAATTATATATAAGGG------ACTGTACACCTGTACTGCTTTCTCA-CTTGTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTATCCTAAGGTaaggaaggaaagcagaaagTCTGGAGATGGCTGAGAGATACC-GGCTTTGTCAGTGGCTTGGATTTCCTAACCAGAGCTATCCTACTGCACT--GTGTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31652574 395 -  90373283 tactgcatagcactgccagctgggtatggacaag--catcctataacctaatacatctatt-----ttaattcctacaacaaaaca-tttgaatactgacactaaatgggataaagaaaacagtgagtcctgtgtcagtttaggtcagattttgctgccaaactagttataaataacttgattttcagcattttgta-----gattttagaattatatataaggg------actgtacacctgTACTGGTTTCTCA-CTTGTTCTACTGCAACTCCCAGTAAATGGGCCTCTAGCATAAAATCCTGGCTATCCTAAGGTAAGGAATGAAAGCAGAAAGTCTGGAGATGGCTGAGAGGTACC-GGCTTTGTCAGTGGCTTGGATTTCCTAACCACAGCTATCCTACTGCACT--GTGTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37459907 390 +  50472720 tatt-catagcatcaccagctgcgtatggacaaa--caccctataatccaatatatccata-----ttcattcctataataaaaca-tctgaatacttacactaaatgggataaagaccatagtgagccccatgtcagtttaggtcaggttttgctgccaaactagttataaataacttgattttcagcattttgtg-----gattttagaattgtatataaggg------actgtacacctATACTGGTTTCTCATTTTTTTCTTCTGCA------AGGAAATGAGCCTCTAGCATAAAAGCCTGGCTGT-CTAAGGTAAGGAAGGAAAGCAGAAAGTCTGGAGACAGCTGAGAGGTACA-GGCTTTGTCAGTGGCTTGGATTTCCTAACCAGGACTATCCCAATGCACTAAGTGTT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91579659 396 +  98207768 tattttacagcacc-ctagctggctcgggctcag--cagcccacagtcaaatacacttaattcaaatccactcctgcaagaaaacactttgactacttagaataaatgcaataaagaaag-aatgagccatatgtccgtttagatcaggtttcactg-tacactagtaaagaaaagcttgactttcagtgttctgggtctaagaactttgaactgtgtacaaggagtGCATACAGCAGACTCGTACCCCTTTCTTA-CTCTCTC-ACTGTGGCCCCCAGTGGGCGGATTTGTAGTTTAAGAACTTAGCTGC-CCAAGG----GAAGTCATTCAGGAACTCTAGAGATGGCTGGGGGGC-CT-GGATTGGTTAGAGGCTGTGATTTTCTA---TGAACCAACACACT-TACTAAG----
i mm10.chr16                I 697 C 0
s canFam3.chr31              28069929 386 +  39895921 tacaacatagcagc-ccagctctgttgggaccag--cctcc-acaaggaaatacaac---------cacattctagcaagaaaaca-tctgaatatcaat--tcaatggaataaagaccataaggagcccc-cgtcaacttaggtcaggtttggctgccaaTCTGGTTATGAGAAACCTAACTTTCAGCACTTTGTG-----GATTTTAGGATTATGTATATGGG------ATTGTAGAGCTGTACAGATTTCCCA-CTTTACCACTTACAACCCTCAGTAAATGGACCTCGAGTATACAG-CCTGGCTGT-CCAAGGTAAAGAAGGTAATCAGAAGCACTAGAAATGGCTGAGAGTTACCTGGTCTTGTCAGTGGCTTAGATTCCACAACCA-AGCTATCCCACTGCACTCAGCGAC
i canFam3.chr31             C 0 C 0

a score=1129125.000000
s hg38.chr21_GL383581v2_alt     54825 309 +    116689 CCCACTGACAAGTTTTATTA---AACTCATGTATCTTCACACAGAGCAGTATCTTCAATCTAAGTGAACAATTATACTAAGTTGTACTCAAGGTAGAGTAA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------CAAG-AAGA---------------------------------------------------ATATATACTTACTTTGGGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTAGAGAAGAGGCTTTATGATTT-TGTTCATTTTTGCAGCTCTGTAACGTCTTA
s panTro4.chr21              19558956 309 +  32799110 CCCACTGACAAGTTTTATTA---AACTCATGTATCTTCACACAGAGTAGTATCTTCAATCTAAGTGAACAATTATACTAAATTGTACTCAAGGTAGAGTAA---------GCGAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------AAAG-AAGA---------------------------------------------------ATATATACTTACTTTGGGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTAGAGAAGAGGCTTTATGATTT-TGTTCATTTTTGCAGCTCTGTAACGTCTTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34456868 306 +  48394510 CCCACTGACAAGTTTTATTA---AACTCATGTATCTTCACACAGAGTAGTATCTTCAATCTAAATGAGTAATTATACTAAATTGTACTCAAGGTAGAGTAA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------C----AAGA---------------------------------------------------ATACATACTTACTTTGGGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTAGAGAAGAGGCTTTATGATTT-TGTTCATTTTTGCAGCTCTATAACGTCTTG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19993591 304 +  32716333 CCCCCTGACAAGTTTTATTA---AACTCATGCATCTTCACACAGAGTAGTATCTTCAATCTAAGTGAATAATTATACTAAATTGTACTC-----AGAGTAA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------CAAG-AAGA---------------------------------------------------ATACATACTTACTTTGTGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTAGAGAAGAGGCTTTATGATTT-TGTTCATTTTTGCAGCTCTATAACGTCTTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185156700 313 - 198365852 CCCACTGACAAGTTTTATTAAACAACTCATGTATCTTCACACAGAGTAATATCTTCAATCTAACTGAGTAATGATACTAAATTGTACTCAAGGTAGAGTTA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATAGATTTGCAGATCAGA-------------------------------------------------------GTGTTTG-TTTGGGTAACATCTGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTGGAGAAGAGGC-TTATGATTT-TGTTCATTTTTACAGCCCTATAACGTCTTA
i rheMac3.chr3              I 316 C 0
s macFas5.chr3              178996407 307 - 192294377 CCCACTGACAAGTTTTATTAAACAACTCATGTATCTTCACACAGAGTAATATCTTCAATCTAACTGAGTAATGATACTAAATTGTACTCAAGGTAGAGTTA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------CAGG-AAGA-------------------------------------------------------ATACTTACTTTGGGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTGGAGAAGAGGC-TTATGATTT-TGTTCATTTTTACAGCCCTATAACGTCTTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167376915 307 - 180432695 CCCACTGACAAGTTTTATTAAACAACTCATGTATCTTCACACAGAGTAGTATCTTCAATCTAACTGAGTAATGATACTAAATTGTACTCAAGGTAGAGTTA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------CAGG-AAGA-------------------------------------------------------ATACTTACTTTGGGTAACATATGCACCGAAAAGAATCCACATGGAAGCAATGAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTGGAGAAGAGGC-Ttatgattt-tgttcatttttacagCCCTATAACGTCTTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31652969 307 -  90373283 CCCACTGACAAGTTTTATTAAACAACTCATGTATCTTCACACAGAGTAATATCTTCAATCTAACTGAGTAATGATACTAAATTGTACTCAAGGTAGAGTTA---------GCCAAATATAA-AAGACATATCTGAATCTCTCCTATAAAATA------CAGG-AAGA-------------------------------------------------------ATACTTACTTTGGGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTGGAGAAGAGGC-TTATGATTT-TGTTCATTTTTACAGCCCTATAATGTCTTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37460297 311 +  50472720 CCCACTGACAAGTTTTATTAAACAACTAATGTATCTTCACACAGAGTAGTATCTTCACTCTAGCTGAATCATTAGATGAAATTGTAGTCAAGGCAGAGTAA---------GCCAAATATAA-CAGACATATCTGAATCTCTCCTATAAAATA------TAGG-AAGA---------------------------------------------------TTACATACTTACTTTGAGTAACATATGCACCAAAAAGAATCCACATGGAAGCAATAAGTGACCCAAACATCAACATGAAACCAATGAAAAGCCAAACTCGAGCACCTGTGTGGAGAAGAGGCTTTATGATTT-TGCTCATTTTT-CAGCTCTCTAGTGACTCA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91580055 296 +  98207768 -------ACAGGTTCTATG----AATTAGTGTGTCTTTACCCAGAGGAAGA-ATTTAAGCTAATTCAATAATCACATTCATAGTAACTCCA-----AACGA---------ACCAGACAGAAGAAGCCAAACATAAAGTCCGCCTGTAACATA------AAGG-AGAG---------------------------------------------------ATGCACACTTACTTTGAGTAACATATGCACCAAAAAGGATCCACATGGAGGCGATGAGTGACCCGAACATCAGCATGAACCCAATGAAGAGCCAGACCCGAGCACCTGCGGGGGACAGGGGCTTCCTTACAA-TCCGCAGCTACACAGAGCTATAATGTCTTA
i mm10.chr16                C 0 I 1262
s canFam3.chr31              28070315 345 +  39895921 CCCACTAACAGCTTTTATTAAACAACTTAGGTAT------------------CTTCAAGCTAAGTGAATAGTTACACTAAATTTTACTCCAGGTGGAGCTAACGGACTACGCTACATGTAA-AAGACGTATGTGAATCT---CTATGAAATA------AAAG-AGGAGTAAAATTAATTAGTTAGTTAATTTAAGAAAAAAAGAAATAAAAAGGAGAAATAAATACTTACTTTGGGTAACATATGCACCAAAGAGAATCCACATGGAAGCAATAAGTGATCCAAACATCAACATGAAACCAATGAAGAGCCAAACTCGAGCACCTATATAAAGAACAGGCTTTAGGATTTCCGCTCATTTCTGCAGCT-------GTCTTA
i canFam3.chr31             C 0 C 0

a score=226891.000000
s hg38.chr21_GL383581v2_alt     55134 70 +    116689 GGAATACATAATACTAGGAGCCCTGTTAGCCTAGTATATATTATGCATATCAAAGATAGTCATATATTTA-----------------
s panTro4.chr21              19559265 70 +  32799110 GGAATACATAATACTAGGAGCCCTGTTAGCCTAGTATATATTATGCATATCAAAGATAGTCATATATTTA-----------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34457174 70 +  48394510 GGAATACATAATACTAGGAGCCCTGTTAGCCTAATATATATTATGCACATCAAAGATAGTCATATATTTA-----------------
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19993895 70 +  32716333 GGAATACATAATAATAGGAGCCCTGTTAGCCTAATATATATTATGCATATCAAAGATAGTCATATATTTA-----------------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185157013 70 - 198365852 GGAATACATAACACTAGAAGCCCTGTTAGCCTTGTATGTATTATGCATATCAAAGATAGTCATAtattta-----------------
i rheMac3.chr3              C 0 I 326
s macFas5.chr3              178996714 70 - 192294377 GGAATACATAACACTAGAAGCCCTGTTAGCCTTGTATGTATTATGCATATCAAAGATAGTCATATATTTA-----------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167377222 70 - 180432695 GGAATACATAACACTAGAAGCCCTGTTAGCCTTATATGTATTATGCATATCAAAGAtagtcatatattta-----------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31653276 70 -  90373283 GGAATACATAACACTAGAAGCCCTGTTAGCCTTATATGTATTATGCATATCAAAGATAGTCATATATTTA-----------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37460608 70 +  50472720 GAAATATATAATGCTAGGAACCCTGTTAGCCTAATATATATTATACATATGTTAGATAGTCATACATTTA-----------------
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28070660 87 +  39895921 AGAATGAGTCACAATGGAAACACCATTAACTTAATACATGCTATGCATATCAAAGACAGCCACATATTCCCATATTCATATGGAATA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I

a score=220035.000000
s hg38.chr21_GL383581v2_alt     55204 78 +    116689 ----------TATAAATCTGCTGTA--AGTTAAATGAATGATGATT----TAAAAAAAAAA-CA----------CTAAAAGAAGTTAAACCATACATGGAAAAGG--
s panTro4.chr21              19559335 81 +  32799110 ----------TATAAATCTGCTGTA--AGTTAAATGAATGATGATT----TAAAAAAAAAA-AA-------AAACTAAAAGAAGTTAAACCATACATGGAAAAGG--
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34457244 77 +  48394510 ----------CATAAATCTGCTGTA--AGTTAAATGAATGATGA-T----TAAAAAAAAAA-AA----------CTAAAAGAAGTTAAACCATACATGCAAAAGG--
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19993965 78 +  32716333 ----------TATAAATCTGCTGTA--AGTTAAATGAATGATGATT----AAAAAAAAAAA-AA----------CTAAAAGAAGTTAAACCACACATGGAAAAGG--
i nomLeu3.chr25             C 0 I 1
s rheMac3.chr3              185157409 81 - 198365852 ----------TATAAATCTGCTCTA--AGTTAAATGAATGATGATT----AAAAAAAAAAA-AA-------AAACTAAAAGAAGTTAAACCATACATGGAAAAGG--
i rheMac3.chr3              I 326 I 297
s macFas5.chr3              178996784 82 - 192294377 ----------TATAAATCTGCTCTA--AGTTAAATGAATGATGATT----AAAAAAAAAAACAA-------AAACTAAAAGAAGTTAAACCATACATGGAAAAGG--
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167377292 85 - 180432695 ----------tataaatctgCTCTA--AGTTAAAtgaatgatgatttaaaaaaaaaaaaaa-aa-------aaactaaaagaagttaaaccatacatggaaaagg--
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31653346 88 -  90373283 ----------TATAAATCTGCTCTA--AGTTAAATGAATGATGATT----aaaaaaaaaaa-aaaaaaactaaactaaaagaagttaaaCCATACATGGAAAAGG--
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37460678 73 +  50472720 ----------TATAAATCTGCTGCA--AGTTAAATTAATGATGATA-------AAAAACAA-AA----------CTAAAAGAAGGTAAACCATATATGGAAAG----
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28070747 90 +  39895921 TGTGAGCAGCACTACACCTGCTCTAACAATTAACTGAATAAAGACT----TAAAAAACAAA-------------TTAAAAGGGGTTAAGCCACACTTGGGAAGAGGA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I

a score=290340.000000
s hg38.chr21_GL383581v2_alt     55282  87 +    116689 AAAAAAAGAAAGTTACCTTTTTACTGACTAGAGAAACGAATGCCCT---------------------AATTAAAAAATTACACTGTTGTATATATTACCAAAATAATT
s panTro4.chr21              19559416  87 +  32799110 AAAAAAAGGAAGTTACCTTTTTACTGACTAGAGAAACGAATGCCCT---------------------AATTAAAAAATTACACTGTTGTATATATTACCAAAATAATT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34457321  87 +  48394510 AAAAAAAGAAAGTTACCTTTTTACTGACTAGAGAAACAAATGCCCT---------------------AACTAAAAAATTACGCTGTTGTATATATTATCAAAATAATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19994044  87 +  32716333 AAAAAAAGAAAGTTATCTTTTTACTGACTAGAGAAACGAATGCCCT---------------------AACTAAAAAATTACGCTGTTGTATATATTATCAAAATAATT
i nomLeu3.chr25             I 1 C 0
s rheMac3.chr3              185157787  87 - 198365852 aaaaaaaGTAAGTTACCTTTTTACTGACTAGAGAAATGAATGCCCT---------------------AACTAAAAAATTACGCTGCTGTATATATTATCAAAATAACT
i rheMac3.chr3              I 297 C 0
s macFas5.chr3              178996866  87 - 192294377 AAAAAAAGTAAGTTACCTTTTTACTGACTAGAGAAATGAATGCCCT---------------------AACTAAAAAATTACGCTGCTGTATATATTATCAAAATAACT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167377377  87 - 180432695 aaaaaaagtaagttaCCTTTTTACTGACTAGAGAAATGAATGCCCT---------------------AACTAAAAAATTACGCTGCTGTATATATTATCAAAATAACT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31653434  87 -  90373283 AAAAAAAGTAAGTTACCTTTTTACTGACTAGAGAAATGAATGCCCT---------------------AACTAAAAAATTACGCTGCTGTATATATTATCAAAATAACT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37460751  87 +  50472720 AAAAAAAGAAAGTTTCCTTTTTACTTACTAGAGAAATGAATGCCCT---------------------AACTAAAAAATTACCCTGTTGTATACATTATCAAAGTAATT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28070837 108 +  39895921 AAAAAAAGAGAATCATCTTTCTGCTGGCTACAGAAACTAATACCCTGGCGAACTAAACTAGGTAAGCATCTAAGTAATTACATGACTGAATTGATTAACTGATTAATT
i canFam3.chr31             C 0 I 6
e mm10.chr16                 91580351 1262 +  98207768 I

a score=126781.000000
s hg38.chr21_GL383581v2_alt     55369 42 +    116689 GCTCTATTAAAAGTAGCACATGTATTCTGGATAGCCATCACC
s panTro4.chr21              19559503 42 +  32799110 GCTCTATTAAAAGTAGCATATGTAATCTGGATAGCCATCGCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34457408 42 +  48394510 GCTCTATTAAAAGTAGCATATGTATTCTGGATAGCCATCACC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19994131 42 +  32716333 GCTCTATTAAAAGTAGCATATGTATTCTGGATAGCCATCACC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185157874 42 - 198365852 GCCCTATTAAAAGTAGCATATGCATTCGGGATAGCCATCATC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178996953 42 - 192294377 GCCCTATTAAAAGTAGCATATGCATTCGGGATAGCCATCATC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167377464 42 - 180432695 GCCCTATTAAAAGTAGCATATGCATTCTGGATAGCCATCATC
i papAnu2.chr3              C 0 I 2892
s chlSab2.chr2               31653521 42 -  90373283 GCCCTATTAAAAGTAGCATATGCATTCTGGATAGCCATCATC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37460838 42 +  50472720 GCTCTATTAAAAGTAGCATATGTATTCTAGACAGCCATCACC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945  6 +  39895921 I

a score=341903.000000
s hg38.chr21_GL383581v2_alt     55411 146 +    116689 ACATAGGAATGAGAGACTTCAAATGAAGAAGGACTAATATGTCCCTTTTTAATCAATGGTAAGCTTCTATAATCACACCATTATTCAATATGGTACAAATAACGGCcattctttaggagtatattcaggcttttttattgctgagg
s panTro4.chr21              19559545 146 +  32799110 ACATAGGAATGAGAGACTTCAAATGAAGAAGGACTAATATGTCCCTTTTTAATCAATGGTAAGCTTCTATAATCACACCATTATTCAATATGGTACAAATAACGGCcattctttaggagtatattcaggcttttttattgctgagg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34457450 146 +  48394510 ACGTAGGAATGAGAGACTTCAAATGAAGAAGGACTAATATGTCCCTTTTTAATCAATGGTAAGCTTCTATAATCACACCATTATTCAATATGGTACAAATAACGGCcattctttaggagtatattcaggcttttttattgctgagg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19994173 146 +  32716333 ACATAAGAATGAGACACTTCAAATGAAGAAGGACTAATATGTCCCTTTTTAATCAATGGTAAGCTTCTATAATCACACCATTATTCAATATGGTACAAATAACGGCcattctttaggagtatgttcaggcttttttattgctgagg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185157916 145 - 198365852 ACAAAGGAATGAGAGACGTCAAATGAAGAAGGACTAATATGTCCCTTTTTAATCAATAATAAGCTTCTATAATCACACCATTACTCAATATAGTACAAATAATGGCCATTCTTTA-GAGTatattcaggcttgtttattgctgagg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178996995 145 - 192294377 ACAAAGGAATGAGAGACGTCAAATGAAGAAGGACTAATATGTCCCTTTTTAATCAATAATAAGCTTCTATAATCACACCATTACTCAATATAGTACAAATAATGGCCATTCTTTA-GAGTatattcaggcttgtttattgctgagg
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31653563 145 -  90373283 ACAAAGGAATAAGAGACGTCAAATGAAGAAGGACTAATATGTTCCTTTTTAATCAATGGTAAGCTTCTATAATCACACCATTACTCAATATGGTACAAATAATGGCCATTCTTTA-GAGTATGTTCaggcttgtttattgctgagg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37460880 146 +  50472720 ACATAGGAATGAGAGCTTTCAAATGAATAAGGACTAATATGTCCCTTTTTAATCAATGGTAAACTTCTAAAATCATACCATTACTCAATATGGTACAAATAATGGCcattctttaggagtatattcaggcctttttatggctgagg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e papAnu2.chr3              167377506 2892 - 180432695 I

a score=2473302.000000
s hg38.chr21_GL383581v2_alt     55557 836 +    116689  
s panTro4.chr21              19559691 841 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34457596 839 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19994319 838 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185158061 858 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178997140 852 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167380398 853 - 180432695  
i papAnu2.chr3              I 2892 C 0
s chlSab2.chr2               31653708 857 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37461026 831 +  50472720  
i calJac3.chr21             C 0 I 693
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I

a score=1481003.000000
s hg38.chr21_GL383581v2_alt     56393 650 +    116689  
s panTro4.chr21              19560532 644 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34458435 651 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19995157 646 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185158919 627 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178997992 627 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167381251 635 - 180432695  
i papAnu2.chr3              C 0 I 311
s chlSab2.chr2               31654565 636 -  90373283  
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e calJac3.chr21              37461857 693 +  50472720 I

a score=976708.000000
s hg38.chr21_GL383581v2_alt     57043 413 +    116689 aaaaaactttggataagttacagtgaaacttcctatAAAAAACAGATAATAGTGgccaggcacagtggcttacaccggtaatcccagctactctggaggctgagaggggaggattgcttgagcccaggagttcaaggcttttctgcgtcatgatcatgccactgcactctagcctgggcgacagagcaagacctcgtctcaaaaaaagaTAATAGTAACATAATTCACAGCAATGTCCGTGGAATATTCTTGAAAGAAAAATGATGGAGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTTGCTAATATA---TATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACATACAGGATATGATGAAAAGTAAGCGCGATCGCATGCGCATACACACAC
s panTro4.chr21              19561176 413 +  32799110 AAAAAACTTTGGATAAATTACAGTGAAACTTCCTATAAAAAACAGATAATAGTGgccaggcacagtggcttacaccagtaatcccaactactctggaggctgagagtggaggactgcttgagcccaggagttcaaggcttttctgcgacatgatcatgccactgcactctagcctgggcgacagagcaagacctcgtctcaaaaaaagaTAATAGTAACATAATTCACAGCAATGTCCGTGGAATATTCTTGAAAGAAAAATGATGGAGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTTGCTAATATA---TATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACATACAGGATATGATGAAAAGTAAGCGCGATCGCATGCGCATACACACAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34459086 401 +  48394510 AAAAAACTTTGGATAAGTTACAGTGAAACTTCCTATAAAAAACAGATTATAGTGgccaggcacagtggcttgcaccagtaatcccaactaccctggaggctgagaggggaggattgcttgagcccaggagttcaaggcttttctgcgttatgatcatgccactgcactctagcctgggcaacagagcaagacctcatctcaaaaaaagaTA---------------ACAGCAATGTCCGTGGAATATTCTTTAAAGAAAAATGATAGAGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTTGCTAATATATATTATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACATACAGGATATGCTAAAAAGTAAGCGTGATCGCACGTGCATACACACAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19995803 405 +  32716333 AAAAAACTTTGGATAAGTTACAGTGAAACTTCCTATAAAAAACAGGTAATAGTGTCCAggcacag--------accggtaatcccagctactctggaggctgagaggggaggattgcttgagcccaggagttcaaggcttttctgcgttatgatcacgccactgcactctagcctgggcaacagagcaagacctcgtctcaaaaaaaGATAATAGTAACATAATTCACAGCAATGTCCGTGGAATATTCTTTAAAGAAAAATGGTGGAGTACATTATTTGTATGCTCTACATACAACATCTTTCACTTGCTAA-ATATACTATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACATACAGGATATGCTAAA----AAGCGCGATCGCATGCGCATACACACAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185159546 416 - 198365852 AAAAAACTTTGGATAAGTTACAATGAAACTTCCTATAAAAAACGGGTAATAGTGgccagccacagtggcttacacgggtaatcccaactattctggaggctgaagggggaggactgcttgagcccaggagttccaagcttttctgcgctatgatcacaccactgcaccctagcctgggtgacagagcaagaccctgtctcaaaaaaagaTAATAGTAACATAATTCACAGCAATGTCCGTGGAATATTCTTTAAAGAAAAATGATGGAGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTTGCTAATATATATTATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACACACAGGATATGCTAAAAAGTGAGCGCAATTGCATGCGCATACACACAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178998619 416 - 192294377 AAAAAACTTTGGATAAGTTACAATGAAACTTCCTATAAAAAACGGGTAATAGTGgccagccacagtggcttacacgggtaatcccaactattctggaggctgaagggggaggactgcttgagcccaggagttccaagcttttctgcgctatgatcacaccactgcaccctagcctgggtgacagagcaagaccctgtctcaaaaaaagaTAATAGTAACATAATTCACAGCAATGTCCGTGGAATATTCTTTAAAGAAAAATGATGGAGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTTGCTAATATATATTATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACACACAGGATATGCTAAAAAGTGAGCGCAATTGCATGCGCATACACACAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167382197 416 - 180432695 aaaaaactttggataAGTTACAATGAAACTTCCTATAAAAAACGGGTAATAgtggccagccacagtggcttacacgggtaatcccaactactctggaggctgaagggggaggactgcttgagcccaggagttccaggctttTCTgcgctatgatcacaccactgcaccctagcctgggtgacagagcaagaccctgtctcaaaaaaagataatagtAACATAATTCACAGCAATGTCCGTGGaatattctttaaagaaaaatgatggaGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTtgctaatatatattattttttctttaccttcccTCATTCCTGACATTACTGCTGAGGCTGACACACAGGATATGCTAAAAAGTGAGCGCAATTGCATGCGCATACACACAC
i papAnu2.chr3              I 311 I 369
s chlSab2.chr2               31655201 416 -  90373283 AAAAAACTTTGGATAAGTTACAATGAAACTTCCTATAAAAAACGGGTAATAGTGgccagccacagtggcttacacgggtaatgccaactactctggaggctgaagggggaggactgcttgagcccaggagttccaggcttttctgcgctatgatcacaccactgcaccctagcctgggtgacagagcaagaccctgtctcaaaaaaagaTAATAGTAACATAATTCACAGCAATGTCCGTGGAATATTCTTTAAAGAAAAATGATGGAGTACATTA-TTGTATGCTCTACATACAACATC-TTCACTTGCTAATATATATTATTTTTTCTTTACCTTCCCTCATTCCTGACATTACTGCTGAGGCTGACACACAGGATATGCTAAAAAGTGAGCGCAATTGCATGCGCATACACACAC
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e calJac3.chr21              37461857 693 +  50472720 I

a score=8951.000000
s hg38.chr21_GL383581v2_alt     57456 12 +    116689 ATATTGTGCACT
s panTro4.chr21              19561589 12 +  32799110 ATATTGTGCACT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34459487 12 +  48394510 ATATTGTGCACT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19996208 12 +  32716333 ATATTGTGCACT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185159962  5 - 198365852 -------ACACT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178999035  5 - 192294377 -------ACACT
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31655617  7 -  90373283 -----ACACACT
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945  6 +  39895921 I
e calJac3.chr21              37461857 693 +  50472720 I
e papAnu2.chr3              167382613 369 - 180432695 I

a score=1312842.000000
s hg38.chr21_GL383581v2_alt     57468 547 +    116689  
s panTro4.chr21              19561601 547 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34459499 541 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19996220 546 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185159967 546 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178999040 546 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167382982 546 - 180432695  
i papAnu2.chr3              I 369 C 0
s chlSab2.chr2               31655624 546 -  90373283  
i chlSab2.chr2              C 0 I 445
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e calJac3.chr21              37461857 693 +  50472720 I

a score=49793.000000
s hg38.chr21_GL383581v2_alt     58015 22 +    116689 agaaagtagatcagtagtggcc
s panTro4.chr21              19562148 22 +  32799110 agaaagtagatcagtagtggcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34460040 22 +  48394510 agaaagtagatctgtagtggcc
i ponAbe2.chr21             C 0 M 612
s nomLeu3.chr25              19996766 22 +  32716333 agaaagtagatcagtagtggcc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185160513 22 - 198365852 agaaagtatatcagtggtgacc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178999586 22 - 192294377 agaaagtatatcagtggtgacc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167383528 22 - 180432695 AGAAAGTATATCAGTGGTGACC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31656615 22 -  90373283 agaaagtagatcagtggtgacc
i chlSab2.chr2              I 445 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945  6 +  39895921 I
e calJac3.chr21              37461857 693 +  50472720 I

a score=274802.000000
s hg38.chr21_GL383581v2_alt     58037 161 +    116689 aggaggtgaggggaagagtattaactataaaaaggggtatgagggaactttttggggcaatggaaatgttctgtatcatgattgtagtggtagttacacaactgtaactgtacacatttgatcaagctcatcaaattgtacactttaaattggtggattct
s panTro4.chr21              19562170 161 +  32799110 aggaggtgaggggaagagtattaactataaaaaggggtatgagggaactttttggggcaatggaaatgttctgtatcatgattgtagtggtagttacacaactgtaactgtacacatttgatcaagctcatcaaattgtacattttaaattggtggattct
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19996788 160 +  32716333 aggaggtgagggcaagagtattaactataaaaa-gggtacgagggaactttttggggtaatggaaatgttctgtatcatgattgtagtggtagttacacaactgtaactgtacacatttgatcaaactcatcaaattgtacactttaaattggtggattct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185160535 150 - 198365852 aggaggtgaggggaaggggattaactataaaaaggggtatgaaggaactttttgg-----------tgttctatatcatgattgtagtggtagttacacaactgtaactgtacacatttgttcaaactcatcaaactgtacactttaaattggtggattct
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178999608 150 - 192294377 aggaggtgaggggaaggggattaactataaaaaggggtatgaaggaactttttgg-----------tgttctatatcatgattgtagtggtagttacacaactgtaactgtacacatttgttcaaactcatcaaactgtacactttaaattggtggattct
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167383550 150 - 180432695 AGGAGGTGAGGGGAAGGGGATTAACTATAAAAAGGGGTATGAAGGAACTTTTTGG-----------TGTTCTATATCATGATTGTAGTGGTAGTTACACAACTGTAACTGTACACATTTGTtcaaactcatcaaactgtacactttaaattggTGGATtct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31656637 161 -  90373283 aggaggtgaggggaaggggattaactataaaaaggggtatgaaggaactttctggggtaatggaaatgttctatatcatgattgtagtggtagttacacaactgtaactgtacacatttgttcaaactcatcaaactgtacactttaaattggtggattct
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e ponAbe2.chr21              34460062 612 +  48394510 M
e calJac3.chr21              37461857 693 +  50472720 I

a score=462701.000000
s hg38.chr21_GL383581v2_alt     58198 224 +    116689 ggccaggcgtggtggctcatgcctgcaatcccagcactttgggaggctgatagcttgaggccaggtggatagcttgaggccaggagatcaagaccagcctgaacaacgtggtaaaaccctgtctctacaaaaaataaataaattagctgggcacagccgcatgtgcctataatcacagctacttgagaaactgaggcaggaggatcactcgag-cccaggctgtt
s panTro4.chr21              19562331 224 +  32799110 ggccaggagtggtggctcatgcctgcaatcccagcactttgggaggctgatagcttgaagccaggtggatagcttgaggccaggagatcaagaccagcctgaacaacgtggtaaaaccctgtctctacaaaaaataaataaattagctgggcgcagcagcatgtgcctataatcacagctacttgagaaactgaggcaggaggatcactcgag-cccaggctgtt
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19996948 222 +  32716333 ggccaggcgtggtggctcatgcctgcaatcccagcactttgggaggccgatagcttgagaccaggtggatagcttgaggccaggaaatcaagaccagcctgaacaacgtggtaaaaccctgcctctacaaaaa--aaataaattagctgggcgcggcaacatgtgcctataatcacagccacttgagaaactgaggcgggaggatcactcaag-cccaggctgtt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185160685 225 - 198365852 ggtcgggcgtggtggctcatgcctgtaatcccagcactttgggaagctgataacttgaggacaggtggatagcttgaggccaggagatcaagaccagcctgaaccacatggtaaaaccctgtctctacaaaaaataaataaattagctgggcgtgatggcatgtccctataatcacaactgcttgagaaactgaggtgggaggatcacttgagtcccaggctgtg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178999758 225 - 192294377 ggtcaggcgtggtggctcatgcctgtaatcccagcactttgggaagctgataacttgaggacaggtggatagcttgaggccaggagatcaagaccagcctgaaccacatggtaaaaccctgtctctacaaaaaataaataaattagctgggcgtgatggcatgtccctataatcacaactgcttgagaaactgaggtgggaggatcacttgagtcccaggctgtg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167383700 225 - 180432695 ggtcaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgataacATGAGgacaggtggatagcttgaggccaggagatcaagaccagcctgaaccacatggtaaaaccctgtctctacaaaaaataaataaattagctgggcgtgatggcatgtccCTATAATCACAACTGCTTGagaaactgaggtgggaagatcacttgagtcccaggctgtg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31656798 225 -  90373283 ggtcaggcgtggcggctcatgcctgtaatcccagcactttgggaggctgataacttgaggacaggtggatagcttgaggccaggagatcaagaccagcctgaaccacatggtaaaaccctgtctatacaaaaaataaataaattagctgggcgtgaaggcatgtccctataatcacaactacttgagaaactgaggtgggaggatcacttgagtcccaggctgtg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37462550 211 +  50472720 ggctgggtgcagtggctcacgcctgtaatcacaaaaccttgggaggcc---------aaggcaagtggatcac--aaggtcaagagatcaagaccatcctggccaatgtggtgaaaccccatctctactaaaaatacaaaaattagctgggcgtggtggctcaagcctttagtcccagctactcaggaggctgagatgggagg--tgcttgaa-cccaggaggtg
i calJac3.chr21             I 693 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e ponAbe2.chr21              34460062 612 +  48394510 M

a score=913815.000000
s hg38.chr21_GL383581v2_alt     58422 355 +    116689 gaggctgcagtgagccaagatcatgccactgcactccagcctgggtggcagagtgagactccgtctcaaaaa-aaattaataaaataataaatacattagtgaattttattatacttaaaTTAT-----ATTCAATTAAGCTGACAAAAAG-AAAAAATATACACGTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAagcacagcatagtggctaaaagcatgggctctgg-------agccagactgtccgtgttcaatcctggctccaccacttacttgctctgtgactttggacacattatgtaagcccactgtaccttaatttcttcatattataatgTAAAt----tttttt
s panTro4.chr21              19562555 359 +  32799110 gaggctgcagtgagccaagatcatgccactgcactccagcctgggtggcagagtgagactccctctcaaaaa-aaattaataaaataataaatacattagtgaattttattatacttaaaTTAT-----ATTCAATTAAGCTGACAAAAAG-AAAAAATATACACATGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAAGCCCagcatagcggctaaaagcatgggctctgg-------agccagactgtccgtgttcaatcctggctccaccacttacttgctctgtgactttggacacattatgtaagcccactgtaccttaatttcttcatattataatgtaaatattttttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34460674 350 +  48394510 gaggctgcagtgagccaagattgtgccactgcactccagcctgggtgac--agtgagactctgtctcaaaaa-aaattaataaaataataaaTACATTAGTGAATTTTATTATACTTAAATTAT-----ATTCAATTAAGCTGACAAAAAG-AAAAAATATACACGTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAagcatagcatggtggctaaaagcatgggctctgg-------agacagactgtcagttttcaatcctggcttcaccacttacttgctctgtgactttggacccattatttaagcccactgtaccttaatttcttcatattataatgTAA-------ttttt
i ponAbe2.chr21             M 612 C 0
s nomLeu3.chr25              19997170 361 +  32716333 gaggctgcagtgagccaagatcgtgccactgcacaccagcctgggtgacagagtgagactctgtctcaaaaa-aaattaataaaataataaatacattagtgaattctattatacttaaaTTATATTCCATTCAATTAAGCTGACAAAACG-AAAAAATATACACGTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAagcacagcatggtggctaaaagcatgggctctgg-------agccagactgtcagtgttcaatcctggctccaccaattacttgctctgtgattttggacacattatttaagcccactgtaccttaagttcttcatattataatatAAAt---ttttttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185160910 336 - 198365852 gaggctgcagtgagccaagattgtgccactgcactccagcctgggggac--agagagactctatctcaaaaa-aatttcataaaat---------aatagtgaattatatTATACTTAAATTAT-----ATTCAGTTAAGCTGACAAAAAG-AAAAAATATACACGTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAagtacagcatggtggctaaaagcatgggctctgg-------------------agtgttcaatcctggctccaccacttacttgctctgtgactttggacacattatttaagcccactgtaccttaatttcttcatattataatgTAAAtttttttgttt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              178999983 336 - 192294377 gaggctgcagtgagccaagattgtgccactgcactccagcctgggggac--agagagactctatctcaaaaa-aatttcataaaat---------aatagtgaattatatTATACTTAAATTAT-----ATTCAGTTAAGCTGACAAAAAG-AAAAAATATACACGTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAagtacagcatggtggctaaaagcatgggctctgg-------------------agtgttcaatcctggctccaccacttacttgctctgtgactttggacacattatttaagcccactgtaccttaatttcttcatattataatgTAAAtttttttgttt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167383925 353 - 180432695 gaggctgcagtgagccaagattgtgccactgcactccagcctgggggac--agagagactctatctcaaaaa-aatttcataaaat---------aatagtGAATTATATTATACTTAAATTAT-----ATTCAGTTAaactgacaaaaag-aaaaaatatacacgTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAAGTACAGCATGGTGGCTAAAAGCATGGGCTCTGGAGTGTTCAATC--ACTGTCAGTGTtcaatcctggctccaccacttacttgctctgtgactttggacacATTATTTAAGCCCACTGTaccttaatttcttcatattataatgtaaatttttttgttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31657023 358 -  90373283 gaggctgcagtgagccaagattgtgccactgcactccagcctaggagac--agagagactctatctcaaaaa-aaTTTCATAAAATAATA-----AATAGTGAATTGTATTATACTTAAATTAT-----ATTGAGTTAAGCTGACAAAAAGAAAAAAATATACATGTGGTACCAAACCAGACAAAGTGACCAAATGGTTCTAGATGGGAAACAagtacagcatggtggctaaaagcatgggctctggagtgttcaatc--actgtcagtgttcaatcctggctccaccacttacttgctctgtgactttggacacattatttaagcccactgtaccttaatttcttcatattataatgTAAAtttttttgttt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37462761 305 +  50472720 aaggttgcagcaagccgagattgcaccactgcactccagtct-ggcgacagagcaagactccgtctcaaaagtaaataaataa------------aTAAGTGAATTTCATTGTACTT-TATTAT-----ATTCAATTAAGCTAACAAAAAG-AA-------------------------------------AAATAGTTCGCGATGGGAAACAagcacagcatggtggctaaaagcacgggctctgg-------agccagactgtcagtgttcactcccggctccaacacgtacttgctctgtgactctggacaagttatttaagtccactgtaccttaatttcttcatattacaatgTAAATTTTTTT----
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I

a score=42638.000000
s hg38.chr21_GL383581v2_alt     58777 20 +    116689 ttttttttttgagacggagt
s panTro4.chr21              19562914 20 +  32799110 ttttttttttgagacggagt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34461024 20 +  48394510 ctttttttttgagacggagt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19997531 20 +  32716333 ttttttttttGAGACAGAAT
i nomLeu3.chr25             C 0 M 218
s rheMac3.chr3              185161246 20 - 198365852 gtttgtttttgagacagagt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179000319 20 - 192294377 gtttgtttttgagacagagt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167384278 20 - 180432695 gtttgtttttgagacagagt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31657381 20 -  90373283 gtttgtttttgagacagagt
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945  6 +  39895921 I
e calJac3.chr21              37463066  0 +  50472720 C

a score=401540.000000
s hg38.chr21_GL383581v2_alt     58797 235 +    116689 ttcactcttgttgcccaggctggagtccaatgaggtgatctcggctcaccgcaacctctgcctcccgggttcaagcgattctcttgcctcagcctcccaagtagctgggactacagaagtgtgtcaccacgcctggctaattttgta---tattttttagtagagacggggtttctccatgttggcagggctggtctcgaactcctgaccttaggtgttccacccgtctcagcctccc
s panTro4.chr21              19562934 235 +  32799110 ttcactcttgttgcccaggctggagtccaatgacgtgatctcggctcaccgcaacctctgcctcccgggttcaagcgattctcttgcctcagcctcccaagtagctgggactacagaagtgtgtcaccacgcctggctaattttgta---tattttttagtagagacggggtttctccatgttggcagggctggtctcgaactcccgaccttaggcattccacccgtctcagcctccc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34461044 234 +  48394510 tttgctcttgttgcccagactggagtgcaatgaggtgatctcggctcactgcaacctctgcctcccgggttcaagtgattctcttgcctcagcctcccaagtagctgggactacagaagtgtgtcaccacgcctggctaattttgta---t-ttttttagtagagacggggtttctccatgttggcagggctggtctcgaactcctgaccttaggtgttctacccgtctcggcctccc
i ponAbe2.chr21             C 0 I 537
s rheMac3.chr3              185161266 237 - 198365852 ttcgctcttgttacccaggctggagtgcaatgaggtgatcttggctcactgcaacctccgcctcccgggtacaagcgattctcttgcctcagtctcccaagtagctgggactacggaagtgagtcaacatgcctggctaattttgta-tttttttttaagtagagacggggtttctccatgttggcgaagctggtcttaaactcctgaccttaggtgatccacccgtctcagcctccc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179000339 237 - 192294377 ttcgctcttgttacccaggctggagtgcaatgaggtgatcttggctcactgcaacctccgcctcccgggtacaagcgattctcttgcctcagtctcccaagtagctgggactacggaagtgagtcaacatgcctggctaattttgta-tttttttttaagtagagacggggtttctccatgttggcgaagctggtcttaaactcctgaccttaggtgatccacccgtctcagcctccc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167384298 223 - 180432695 ttcgctcttgttacccaggctggagtgcaatgaggtgatcttggctcactgcaacctccgcctcccgcgtacaagcgattctcttgcctcagtcttccaagtagctgggactacagaagtgagtcaa---------------gtgtattttttttttaagtagagacggggtttctccatgttggcgaagctggtcttaaactcctgaccttaggtgatccacccgtctcagcctccc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31657401 236 -  90373283 ttcgctcttgttacccaggctggagtgcaatgaggtgatcttggctcactgcaacctccgcctcccgggtacaagcgattctcttgcctcagtctcccaagtagctgggactacagaagtgagtcaatacacctggctaattttgta--ttttttttaagtagagacggggtttctccatgttggcgaagctggtcttaaactcctgaccttaggtgatccacccgtctcagcctccc
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e calJac3.chr21              37463066   0 +  50472720 C
e nomLeu3.chr25              19997551 218 +  32716333 M

a score=160898.000000
s hg38.chr21_GL383581v2_alt     59032 151 +    116689 aaagtgctgggattacaggcgtgagccactgcgcccggccGTAAATGTTTAAAAAACACAATTGggccgggctcggtggctcactcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcgggagttcgagacca
s panTro4.chr21              19563169 151 +  32799110 aaagtgctgggattacgggcgtgagccactgcgcccggccGTAAATGTTTAAAAAACACAATTGggccgggctcggtggctcactcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcgggagttcgagacca
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185161503 127 - 198365852 aaagtgctggaattacaggtgtgagctaccatgcccggccGTAAATTTTTAAAAAACACAATTGggccaggcacagtggctcactcctgtaatcctagcactttgggaggccaaggtgggcagatca------------------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179000576 127 - 192294377 aaagtgctggaattacaggtgtgagctaccatgcccggccGTAAATTTTTAAAAAACACAATTGggccaggcacagtggctcactcctgtaatcctagcactttgggaggccaaggtgggcagatca------------------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167384521 127 - 180432695 aaagtgctggaattacaggtgtgagctaccatgcccggccgtaaatttttaaaaaacacaattgggccaggcacagtggctcactcctgtaatcctagcactttgagaggccaaggtgggcagatca------------------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31657637 151 -  90373283 aaagtgctggaattacaggtgtgagttaccacacccggccGTAAATTTTTAAAAAACACAATTGggccaggctcagtggctcactcctgtaatcctagcactttgggaggccaaggtgggcagatcacctgaggtcagaagttcaagacca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e ponAbe2.chr21              34461278 537 +  48394510 I
e calJac3.chr21              37463066   0 +  50472720 C
e nomLeu3.chr25              19997551 218 +  32716333 M

a score=312455.000000
s hg38.chr21_GL383581v2_alt     59183 200 +    116689 gcgtgatcaacatggagaaaccccatctctactaaaactacaaaattagccaagcatggtggcgcatgcctgaaatcccagct-ctcgggagggtgaggcaggagaa-ttgcttgaacccagggggt-ggaggttgtggt-gagccaaaaacccaccactgcactccagcctgggaaagaagagctaaactccgtctcaaaaaa
s panTro4.chr21              19563320 200 +  32799110 gcgtgatcaacatgtagaaaccccatctctactaaaactacaaaattagccaagcatggtggcgcattcctgaaatcccagct-ctcgggagggtgaggcaggagaa-ttgcttgaacccagggggt-ggaggttgtggt-gagccaaaaacccaccactgcactccagcctgggaaagaaaagctaaactccgtctcaaaaaa
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              19997769 190 +  32716333 gcctgatcaacatggagaaaccccatttctactaaaactacaaaattagccaagcatg----------tctggaatcccagct-ctcgggagggtgagggaggagaa-ttgcttgaacccaggaggt-ggacgttgtggt-gagccaaaaacgcaccactgcactccagcctgggcaagaagagcgaaactccgtctcaaaaaa
i nomLeu3.chr25             M 218 C 0
s rheMac3.chr3              185161630 199 - 198365852 -cctgatcaacatgtagaaaccccatctctcctaagcctacaaaactgggcaggcatggtggcgtatgcctgtaatcccagttactctggaggctgagggaggagaa-tcgcttgaacccaggaggt-tgaggcttcggg-gaaccaaaaacgcaccactgcactccagcctgggcaagaaaagcgaaattccgtctg-aaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179000703 200 - 192294377 -cctgatcaacatgtagaaaccccatctctactaaacctacaaaactaggcaggcatggtggcgtatgcctgtaatcccagttactctggaggctgaggcaggagaa-tcgcttgaacccaggaggt-ggaggttgcggt-gagccaaaaacgcaccactgcactccagcctgggcaagaaaagcgaaattccgtctgaaaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167384648 203 - 180432695 -cctgatcaacatgtagaaaccccatctctactaaacctACAAAactaggcaggcatggtggcgcatgcctgtaatcccagttactctggaggctgaggcatgagaatttgcttgaacccaggaggtgggaggtTGCGGGTGAGCCCaaaacgcaccactgcactccagcctgggcaagaaaagcgaaattccatctgaaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31657788 199 -  90373283 gcctgatcaacatgtagaaaccccatctctactaaaactacaaaactaggcaggcatggtggcgcatgcctgtaatcccagttactctggaggctgaggcaggagaa-tcgcttgaacccaggaggt-ggaggttgtggt-gagccaaaaatgcaccactgcactccagcctgggcaagaaaagcgaaattccgtctg--aaaa
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I
e ponAbe2.chr21              34461278 537 +  48394510 I
e calJac3.chr21              37463066   0 +  50472720 C

a score=3459.000000
s hg38.chr21_GL383581v2_alt     59383 7 +    116689 aaaaaaa
s panTro4.chr21              19563520 7 +  32799110 aaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34461815 7 +  48394510 aaaaaaa
i ponAbe2.chr21             I 537 C 0
s nomLeu3.chr25              19997959 6 +  32716333 -aaaaaa
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945 6 +  39895921 I
e rheMac3.chr3              185161829 0 - 198365852 C
e calJac3.chr21              37463066 0 +  50472720 C
e chlSab2.chr2               31657987 0 -  90373283 C
e papAnu2.chr3              167384851 0 - 180432695 C
e macFas5.chr3              179000903 0 - 192294377 C

a score=727060.000000
s hg38.chr21_GL383581v2_alt     59390 250 +    116689 aaaaaaacaaaaaTTGGATAACAATTCAAATGAATTCAAACTAT-AAAAACTAATTTATGTGTAGACAAATAGCATCTTTCTACTGAACAATTTTGTTGCAGTCTGTAGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTTGATCCCCTAATGTGTTCATTACTTTCCTGTTAATAATCATAGTCAGCCATCTTGTAAGTAACATTATTGGTCAACAATTGGGATAATAA
s panTro4.chr21              19563527 248 +  32799110 aaaaaaa--aaaaTTGGATGACAATTCAAATGAATTCAAACTAT-AAAAACTAATTTATGTGTAGACAAATAGCATCTTTCTTCTGAACAATTTTGTTGCAGTCTGTGGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTTGATCCCCTAATGTGTTCATTACTTTCCTGTTAATAATCATAGTCAGCCATCTTGTAAGTAACATTATTAGTCAACAATTGGGATAATAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34461822 250 +  48394510 aaaaaaaaaaaaaTTGGATGACAATTCAAATGAATTCAAACTAC-AAAAACTAATTTAGGTGTAGACAAATAGCATCTTTCTTCTGAACAATTTTGCTGCAGTCTGTGGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTTAATCCCCTAATGTGTTCATTACTTTCCTGTTAATAATCATACTCAGCCATCTTGTAAGTAACATTATTGGTCAACAATTGGGATAATAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19997965 243 +  32716333 aaaaaaa-------TGGATGACAATTCAAATGAATTCAAACTAC-AAAAACTAATTTATGTGTAGACAAATAGCATCTTTCTTCCGAACAATTTTGTTGCAATCTGTGCGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTTGATCCCCTAATGTGTTCATTACTTCCCTGTTAATAATCATAGTCAGCCATCTTGTAAGTAACATTATTGGTCAACAATTGGGATAATAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185161829 241 - 198365852 aaaaaaG--------GGATGATAATTCAAATGAATTCAAACTAA-AAAAACTAATTTATGTGTAGACAAATAGCATCTTTCTTCTGAACAATTTTGTTGCAGTCTGTGGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTCGATCCCCTAATGTGTTCATTATTTTCC-GTTAATAATCACAGTCAGCCATCTTGTAAGTAGCATTATTGGTCAACAACTGGGATAAGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179000903 241 - 192294377 aaaaaaG--------GGATGATAATTCAAATGAATTCAAACTAA-AAAAACTAATTTATGTGTAGACAAATAGCATCTTTCTTCTGAACAATTTTGTTGCAGTCTGTGGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTCGATCCCCTAATGTGTTCATTATTTTCC-GTTAATAATCACAGTCAGCCATCTTGTAAGTAGCATTATTGGTCAACAACTGGGATAAGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167384851 241 - 180432695 aaaaaaa--------ggatgataatTCAAATGAATTCAAACTaa-aaaaaCTAATTTATGTGTAGACAAATAGCATCTTTCTTCTGAACAATTTTGTTGCAGTCTGTGGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTCGATCCCCTAATGTGTTCATTATTTTCC-GTTAATAATCACAGTCAGCCATCTTGTAAGTAGCATTATTGGTCAACAACTGGGATAAGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31657987 241 -  90373283 aaaaaaa--------GGATGATAATTCAAATGAATTCAAACTAC-AAAAACTAATTTATGTGTAGACAAATAGCATCTTTCTTCTGAACAATTTTGTTGCAGTCTGTGGGTGGCTACTCAGGTGATCAGAAGTGAATGTAAAGACAGTGTAGTCCTAGGTTCGATCCTCTAATGTGTTCATTATTTTCC-TTTAATAATCACAGTCAGCCATCTTGTAAGTAGCATTATTGGTCAACAACTGGGATAAGAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37463066 248 +  50472720 AAAAATA---CAATCAGATGACAATTCAAAAGAATTCAAATTACAAAAAAATAATTTTTGTGTAGACAAATAGCATCTTTCTTCTCAACAATTTTGTTGCAGTCTGTGGGTAGCTACTCAGGCGATCAGAAGTGAATGTAAAGACACTGTAGTCCTAGGTTAGATCCCCTAATGTGTTCATTATTTTCCTGGCAATAATCATAGCCAGCCATCTTGTAAGTAACATTATTGGTCAACAGTTGGGATAAGAA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91580351 1262 +  98207768 I
e canFam3.chr31              28070945   6 +  39895921 I

a score=616402.000000
s hg38.chr21_GL383581v2_alt     59640 192 +    116689 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TTTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTAACATGACAAAAACAGTAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACACTAAAACTTTGTTTTAAAGCAAATAAAAAATATTCTATATAATCATTACCAGTCTTGAA
s panTro4.chr21              19563775 192 +  32799110 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TTTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTAACATGACAAAAACAGTAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACACTAAAACTTTGTTTTAAAGCAAATAAAAAATATTCTATATAATCATTACCAGTCCTGAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34462072 192 +  48394510 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TTTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTAACATGACAAAAACAGTAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACACTAAAACTTTTTTTTAAAGCCAATAAAAAATATTCTATACAATCATTACCAGTCCTGAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19998208 191 +  32716333 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TTTGAATAGCAACATTT-TTCATCTATATCATGGGCAGTGTAACATAACAAAAACAGTAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACAGTAAAACTTT-TTTTAAAGCAAATAAAAAATATCCTATATAATCATTACCAGTCCTGAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185162070 192 - 198365852 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TCTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTAACATGACAAAAATAATAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACACTAAAACTTGTTTCTAAAGCAAATAAAAAATATTCCATATAATCATCACCAGTCCTGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179001144 192 - 192294377 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TCTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTAACATGACAAAAATAATAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACACTAAAACTTGTTTCTAAAGCAAATAAAAAATATTCCATATAATCATCACCAGTCCTGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167385092 192 - 180432695 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TCTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTaacatgacaaaaataataacttcCAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACactaaaacttgtttttaaagcaaataaaaaatattccatataaTCATCACCAGTCCTGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31658228 192 -  90373283 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TCTGAATAGCAACATTT-TTTATCTATATCATGGGCAGTGTAACATGACAAAAATAATAACTTCTAGCAATAACTT--ACTTTCTTAAGGATTTGAATAACACTAAAACTTGTTTTTAAAGCAAATAAAAAATATTCCATATAATCATCACCAGTCCTGAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37463314 193 +  50472720 TAAATCCATCATTAGC----------------ACTGGAGTCCAAGATCCA-----TTTGAATAGCAATATTTGTTTATCAGTATCACTGGCAGTATAACATGACAAAAACAGTAACTTCT-GCAATAACTTTAACTTTCTTAAGGATATGAATAACAACAAAACTTT-TTTTAAAGCAAATAAAAAATATCCTATATAATTATTACCAGTCTTGAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28070951 162 +  39895921 TAAAGCCATCATTAGCTTTGCCAGAGGAGTAACCTGGATTCCAACAGCCATTGattttaaataataacattt-tatttatataCTATGAGCAGTAAAACATGACTAAAATAG-AACTTCTAGGAGTAATCT---------------------TAACA-------------------------------ATTATATACAATCATAACTAGGCCTATA
i canFam3.chr31             I 6 C 0
e mm10.chr16                 91580351 1262 +  98207768 I

a score=1282881.000000
s hg38.chr21_GL383581v2_alt     59832 357 +    116689 TAAAGACTCACAAGAGAGGCTTTTTTTCTGGTGACAAATTTCTGTTTTGTCAACACCCATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAACGGCACAAAATCATCAAATGAATTTCAGTATTCGCTGTTAAAATACT--CAAATAT---TTATATAACACTTAGACGGAAAACAGATTATTTCATAACTAAAATCAGTATCTGAATAATTTAACATAT--TTTTAACCTAATAAAAATGCTAGTTGATAGAAATGTTACATTAGTCTTA-TTTTCATAAAGTACACCCAGAAAACACAT
s panTro4.chr21              19563967 358 +  32799110 TAAAGACTCACAAGAGAGGCTTTTTTTCTGGTGACAAATTTCTATTTTGTCAACACACATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAACGGTACAAAATCATCAAATGAATTTCAGTATTCGCTGTTAAAATACT--CAAATAT---TTATATAACACTTAGACGGAAAACAGATTATTTCATAACTAAAATCAATATCTGAATAATTTAACATATC-TTTTAACCTAATAAAAATGCTAGTTGATAGAAATGTTACATTAGTCTTA-TTTTCATAAAGTACACCCAGAAAACACAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34462264 355 +  48394510 TAAAGACTCACAAGAGAGGCTTTTTTTCTGGTGACAAATTTCTATTTTGTCAACACACATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAACAGTACAAAATCATCAAAAGAACTTCAGTATTCGTTGTTAAAATACT--CAAATAT------TATAACACTTAGATGGAAAACAGATTATTTCATAACTAAAATCAATATCTGAATAATTTAACATATC-TTTTAACCTAATAAAAATGCTAGTTGATAGAAATGTTACATTAGTCTTA-TTTTCATAAAGTACACCCAGAAAACACAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19998399 358 +  32716333 TAAAGACTCACAAGAGAGGTTTTATTTCTGGTGACAAATTTCTATTTTGTTAACACACATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGACACAGCATTTATCCTAGAACAGTACAAAATCATCAAATGAATTTCAGTATTCGCTGTTAAAATACT--CAAATAT---TTATATAACACTTAGACGGAAAACAGATTATTTCATAACTAAAATCAATATCTGAATAATTTAACATATC-TTTTAAACTAATAAAAATGCTAGTTGATAGAAATGTTACATTGGCCTTA-TTTTCATAAAGTACACCCAGAAAACACAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185162262 353 - 198365852 TAAAGACTCACAAGAGAGGCTTTTTTTCTGGTGACAAATTTCTATTTTGTTAACACACATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAAAAGTACAAAATCATTAAATGAATTTCAGTATTTGCTGTTAAAATACT--CAAATAT---TTATATATCACTTA----GAAAACAGATTATTTCATAACTAAAATCAATATACGAATAATTTAAC--ATC-TTTTAACCTAATAAAAATGCTAGTGGATAGAAATGTTACATTAGTCTTATTTTTCATAAAGTACACCCAGAAAACACAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179001336 353 - 192294377 TAAAGACTCACAAGAGAGGCTTTTTTTCTGGTGACAAATTTCTATTTTGTTAACACACATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAAAAGTACAAAATCATTAAATGAATTTCAGTATTTGCTGTTAAAATACT--CAAATAT---TTATATATCACTTA----GAAAACAGATTATTTCATAACTAAAATCAATATACGAATAATTTAAC--ATC-TTTTAACCTAATAAAAATGCTAGTGGATAGAAATGTTACATTAGTCTTATTTTTCATAAAGTACACCCAGAAAACACAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167385284 353 - 180432695 TAAAGACTCACAAGAGAGGCtttttttCTGGTgacaaatttctattttgttaacaCACATTAACAGCTCCAAATATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAACAGTACAAAATCATTAAATGAATTTCAGTATTTGCTGTTaaaatact--caaatat---ttatatatcactTA----GAAAACAGATTATTTCATAACTAAAATCAATATATGAATAATTTAAC--ATC-TTTTAACCTAATAAAAATGCTAGTGGATAGAAATGTTACATTAGtcttatttttcataaagtaCACCCAGAAAACACAC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31658420 340 -  90373283 TAAAGACTCACAAGAGAGGCTTTTTTTCTGGTGACAAATTTCTATTTTGTTAACACACATTAACAGCTCAAAGTATCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGATACAGCATTTATCCTAGAACAGTACAAAATCATCAAATGAATTTCAGTATTTGCTGTTAAAATACT--CAAATAT---TT-----------------AAAACAGATTATTTCATAACTAAAATCAATATACGAATAATTTAAC--ATC-TTTTAACCTAATAAAAATGCTAGTGGATAGAAATGTTACATTAGTCTTATTTTTCATAAAGTACACCCAGAAAACACAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37463507 356 +  50472720 TAAAGACTCACAAGAGAGGCTTTTTTTCTGCTGATAAATTTATATTTTGTTAACACACATTAAAAGCTCAAAATA--TTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTATCACCTCTCACCTGAGCATTGGAGACAGCATTTATCCTAGAACAGTACAAAATCATCAAATGAATTTCAGTATTTGCTCTTAAAATACT--CAAATAT---TTACATATCACTTAGAAGGAAAACAGATTATTTCATAACTAAAGTCAATATCTGAGTAATTTAACATATC-TTTTAACCTAATAAAAATGCTAGTGGATAGAAATGTTACATTAATCTTA-TTTTCATAAAGTACACCCAGAAAATACAT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91581613 320 +  98207768 tagagactcctgaggaGGCTCTGCCTTCCGGGGACTTGTCCCTGTTCCGAGAGTGTCCCTCCATCTCCTTCA-CACTCTTACCAGTTCGTCCTAAGCAGCCGCTTTCATAGCTGTCACCTCGCACCTGGGCATTGGATACAGCATTTATCCTGCAG----ACAAGATCAGCCAATG------AGCACTTGC-GTCAGCACAAT--TACATAGGCATTTCATATCATTTGAGAGAGAAACAGACTATTTCCTA----------------GGTTGAGCTAAG----------GAGTTAAAAGAAATTCTAGTG--CAGAAATATT--ATTCCTTTTGTTTTCCACTAAGCACACCCA-AAACCACAT
i mm10.chr16                I 1262 I 1156
s canFam3.chr31              28071113 340 +  39895921 TAAAGAGACCT--------TTTATTTTCTGCTGATAAATTCCT-CTTTGCCAGTGTACACTGACAACTCAAAGTGCCTTTACCTGTTCTTCCTAAACAGCCGCTTTCATAGCTGTCACCTCTCACCTGAGCATTGGACACAGCATTTATCCTGCAACAACACAAAATCATCTCCTAAGCTTTGAT----GCTGCTAAGATAGTCACAGATGT---TTATATATCATTTCGAAGAGAAAC-----ATCTCCTAATTAAAGTCAGTATCTGGATAATTGAACATTTCTTTTTAACTTAACAAATATTCTCGTGGATAGAAATGTTACAGAACTC----TTTACCTAAACTTCACCCAGAAAACATAC
i canFam3.chr31             C 0 C 0

a score=955858.000000
s hg38.chr21_GL383581v2_alt     60189 288 +    116689 -TTATTTTAAGAGA---------------------------------TTTCTATCACTTCTCTCCAGAGATTATACAAGAGGGACCAGTTTTCTGGATTCTTTGTCTATTTCACATTTATACATGAATGACTCAGT----GCTATCCCACTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCTTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTTCTTAAGCTCAGAGAAAATGTAGCTTATGTAT----AATATGCCCACTTTATTCAGCTTCCCCTTCCATTTTTGTTAGAGCAAGGTACATTAATTAGTAACAG-----------------------
s panTro4.chr21              19564325 288 +  32799110 -TTATTTTAAGAGA---------------------------------TTTATATCACTTCTCTCCAGAGATTATACAAGAGGGACCAGTTTTCTGGTTTCTTTGTCTATTTCACATTTATACATGAATGACTCAGT----GCTATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCTTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTTCTTAAGCTCAGAGAAAATGTAGCTTATGTAT----AATATGCCCACTTTATTCAGCTTCCCCTTCCATTTTTGTTAGAGCAAGGTACATTAATTAGTAACAG-----------------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34462619 284 +  48394510 -TTATTTTAAGAAA---------------------------------TTTCTATCACTTGTCTCCAGAGATTATACAAGAGGGGCCAGTTTTCTGG----TTTGTCTATTTCACATTTATACATGAATGACTCAGT----GCCATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCTTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTTCTTAAGCTCAGAGAAAATGTAGCTTATGTAT----AATATGCCCACTTTATTCAGCTTCCCCCTCCATTTTTGTTAGAGCAAGGTACATTAATTAGTAACAG-----------------------
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19998757 256 +  32716333 -TTATTTTAAGAGA---------------------------------TTTCTATCACTT----------------------------GTTTTCTGG----TTTGTCTATTTCACATTTATACATGAATGACTCAGT----GCTATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCTTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTTCTTAAGCTCAGAGAAAATGTAGCTTATGTAT----AATATGCCCACTTTATTCAGCTTCCCTTTCCATTTTTGTTAGAGCAAGGTACATTAATTAGTAACAG-----------------------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185162615 286 - 198365852 -TTATTTTAAGAGA---------------------------------TTTCTATCACTTGTCTGCAGAGATTATACAAGAGGGGCCAGTTTTCTGGTTTCTTTGTCTATTTCACATTTATACATGAATGACTCACT----GCTATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCCTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTCCTTAAGCTCAGAGAAAATGTAGTTTATG--T----AATATGCCCACTTCATTCAGCTTCCCCTTTCATTTTTGTTAGAGCAAGGTACATTAATTAGTAGCAG-----------------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179001689 286 - 192294377 -TTATTTTAAGAGA---------------------------------TTTCTATCACTTGTCTGCAGAGATTATACAAGAGGGGCCAGTTTTCTGGTTTCTTTGTCTATTTCACATTTATACATGAATGACTCACT----GCTATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCCTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTCCTTAAGCTCAGAGAAAATGTAGTTTATG--T----AATATGCCCACTTCATTCAGCTTCCCCTTTCATTTTTGTTAGAGCAAGGTACATTAATTAGTAGCAG-----------------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167385637 286 - 180432695 -TTATTTTAAGAGA---------------------------------TTTCTATCACTTGTCTGCAGAGATTATACAAGAGGGGCcagttttctggtttctttgtcTATTTCACATTTATACATGAATGACTCACT----GCTATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCCTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTCCTTAAGCTCAGAGAAAATGTAGTTTATG--T----AATATGCCCACTTTATTCAGCTTCCCCTTTCATTTTTGTTAGAGCAAGGTACATTAATTAGTAGcag-----------------------
i papAnu2.chr3              C 0 I 304
s chlSab2.chr2               31658760 286 -  90373283 -TTATTTTAAGAGA---------------------------------TTTCTATCACTTGTCTGCAGAGATTATACAAGAGGGGCCAGTTTTCTGGTTTCTTTGTCTATTTCACATTTATACATGAATGACTCACT----GCTATCCCATTTCAAGGTTCTCATTATTATCAAGAGTTAAACAGTTTCTCCTTGTGTTAAAAGTCAAGTGATTTTCTATGATCCATTCCTTAAGCTCAGAGAAAATGTAGTTTATG--T----AATATGCCCACTTTATTCAGCTTCCCCTTTCATTTTTGTTAGAGCAAGGTACATAAATTAGTAGCAG-----------------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37463863 291 +  50472720 -TTATTTTAAGAGA---------------------------------TTTCTATCACTTGTCTCCAGAGATTATACAAGAGGGGCCAGTTTTCTGGTTTCTTTGTCTATTTCACATTTATACATGAATGACTCAGT----GTTATACCATTTTAAGGTTCTCATTATGATCAAGAGTTAAACAATTTCTCTTTGTGTTTAAAGTCAGGTGATTTTCTGTGATCCATTTCATAAGCTCAGAGAAAACGCAGTTTATGTATAATAAATAAGCCCACTTTATTCAGCTTCCCCTTCCATTTTTGTTAGAGCAAGGTACACTAATT-GTAGCAG-----------------------
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28071453 342 +  39895921 TTAGTTTTAAGAAATTACTATCACTAAAAAAAAAAAAAAAGAAGAATTTACTATCACTTGTCTCCAGAGATTATGAAAGAGGGGCCAATTTTCTGAGTTCTTCGCCTATTTTACATTTACACATGAATGAGTCAGGGTGAGTCATCGTATTTTAAGGTTCTCATTA--ATCAAGAGTTA---AGTTCCTCTTTTTGTTAAAGGTCAAGTGATTTTCTCTGATCCATTTCTCAAAGTCA---CACATTTGATGTCTGTATAATAAACAGGCCCACTTTACTCA--CGCTCTTCCCATTTTTGTTAGAGCAAGGTGCATTTA-TAGTAGAAATGTAGATAGTATAGTATGTATAG
i canFam3.chr31             C 0 I 2
e mm10.chr16                 91581933 1156 +  98207768 I

a score=234034.000000
s hg38.chr21_GL383581v2_alt     60477 75 +    116689 GAATTTCCTTTTTTTAGAAGCCACAATGGATATAAGTAGTTCCATTTTCCAAAATATAACCTTTTTAAAACTCCT
s panTro4.chr21              19564613 75 +  32799110 GAATTTCCTTTTTTTAGAAGCCACAATGGATATAAGTAGTTCCATTTTCCAAAATATAACCTTTTTAAAACTCCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34462903 75 +  48394510 GAATTTCCTTTTTTTAGAAGCCACAATGGATATAAGTAGTTCCATTTTCCATAATATAACCTTTTTAAAACTCCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19999013 75 +  32716333 GAATTTCCTTTTTTTAGAAGCCACAATGGATGTAAGTAGTTCCATTTTCCATAATATAACCTTTTTAAAACTCCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185162901 74 - 198365852 GAATTTCCTTTTTTTAGCAGTCACAATGGATATAAGTAGTTCCAATTCCCATAATATAACCTTTTT-AAACTCCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179001975 74 - 192294377 GAATTTCCTTTTTTTAGCAGTCACAATGGATATAAGTAGTTCCAATTCCCATAATATAACCTTTTT-AAACTCCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167386227 74 - 180432695 gaatttcctttttttagcAGTCACAATGGATATAAGTAGTTCCAATTCCCATAATATAACCTTTTT-Aaactcct
i papAnu2.chr3              I 304 C 0
s chlSab2.chr2               31659046 74 -  90373283 GAATTTCCTTTTTTTAGCAGTCACAATGGATATAAGTAGTTCCATTTCCCATAATATAACCTTTTA-AAACTCCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37464154 72 +  50472720 GAAT---CGCTTTTTAGCAGCCAGAATGGATATAAGTAGTTCCATTTTCCATAATACAACCTTTTTAAAACTCCT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28071797 75 +  39895921 GAAAAGCCTCTTCTCTGCACCCTTCATAGATGTAAGTAGTTCTACCTTCTACAATTTAACTTTTTAAAAAAtatt
i canFam3.chr31             I 2 I 189
e mm10.chr16                 91581933 1156 +  98207768 I

a score=813080.000000
s hg38.chr21_GL383581v2_alt     60552 291 +    116689 ggccaggtgcagtggctcacacctgtaatcccagcactttgagagtccacagcaggcaaatcacgaggtcaggagttcaagaccagcctggcaaacatggtggaacc-ccgtctctactaaaaatacaaaaa-attag---ctgggcgtagtggcaggcacctgtaatcccagctacttgggaggctgaggcaagggaatcacttgaac--------ccgggaggcagaggttgcagtgagccaagatcacaccagtgtggtccagccca------aacaacagagtaagactctgtctc-----aaaaacaaa----------a
s panTro4.chr21              19564688 291 +  32799110 ggccaggtgcagtggctcacacctgtaatcccagcactttgagagtccacagcaggcaaatcacgaggtcaggagttcaagaccagcctggcaaacatggtggaacc-ccgtctctactaaaaatacaaaaa-attag---ctgggcgtagtggcaggcacctgtaatcccagctacttgggaggctgaggcaagggaatcacttgaac--------ccgggaggcagaggttgcagtgagccaagatcacgccagtgtggtccagccca------aacaacagagtaagactctgtctc-----aaaaacaaa----------a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34462978 291 +  48394510 ggccaggtgcagtggctcacacctgtaatcccagcactttgagaggccacggcgggcaaatcacgaggtcaggagtttaagaccagcctggccaacatggtgaaacc-ccgtctctactaaaaatacaaaaa-attag---ctgggcgtagtggcaggcacctgtaatctcagctacctgggaggctgaggcaagggaatcacttgaac--------ccgggaggcagaggttgcagtgagccgagatcacgccagtgcggtccagccca------aacaacagagtaagactctgtctc-----aaaaacaaa----------a
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19999088 296 +  32716333 ggccaggtgcagtggctcacacctgtaatcccagcactttgagaggccacagcgggtaaatcacgaggtcaggagttcaagaccagcctggccaacatggtgaaacc-ccgtctctactaaaaatataaaaa-agtag---ctggacgtagtggcaggcacctgtaattccagctacttgggaggctgaggcaggggaatcacttgaac--------ccgggaggcagaggttgcagtgagccgagatcatgccactgcggtccagcccc------aacaacagagtaagactctgtctcaaaaaaaaaaaaaa----------a
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185162975 302 - 198365852 ggccaggtgtggtggcttacacctgtaattccagcactttgagaggccaaggcaggtgaatcacaaggtcaggagttcaatgccagcctggccaacacagtgaacccaccgtctctactaaaaatgcaaaat-attag---ctgggcgtagtagcaggcacctgtaatcccagctacttgggaggctggggcaggagaagcacttgaac--------ccaggaggcaggggttgcagtgaactgagatcgcgccactgcggtccagccca------aacaacagagtaagactctgtctc-----aaaaaaaaacaataataata
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002049 302 - 192294377 ggccaggtgtggtggcttacacctgtaattccagcactttgagaggccaaggcaggtgaatcacaaggtcaggagttcaatgccagcctggccaacacagtgaaaccaccgtctctactaaaaatgcaaaat-attag---ctgggcgtagtagcaggcacctgtaatcccagctacttgggaggctggggcaggagaagcacttgaac--------ccaggaggcagaggttgcagtgaactgagatcgcgccactgcggtccagccca------aacaacagagtaagactctgtctc-----aaaaaaaaacaataataata
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167386301 302 - 180432695 ggccaggtgtggtggcttaaacctgtaattccagcactttgagaggccaaggcaggtgaatcacaaggtcaggagttcaacgccagcctggccaacacagtgaaaccaccgtctctactaaaaatgcaaaat-attag---ctgggtgtagtagcaggcacctgtaatcccagctacttgggaggctggggcaggagaagcacttgaac--------ccaggaggcagaggttgcagtgaactgagatcgcgccactgcggtCCAGGCCa------aacaacagagtaagactctgtctc-----aaaaaaaaacaataataata
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31659120 302 -  90373283 ggccaggtgtagtggcttacacctgtaattccagcactttgagaggccaaggcaggtgaatcacaaggtcaggagttcaacatcagcctggccaacacagtgaaaccaccgtctctactaaaaatgcaaaat-attag---ctgggcgtagtagcaggcacctgtaatcccagctacttgggaggctgaggcaggagaagcacttgaac--------ccaggaggcagaggttgcagtgaactgagatcgcgccactgcggtccagccca------aacaacagagtaagactctgtctc-----aaaaaataataataataata
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37464226 314 +  50472720 ggccgggcagggtggctcacacctgtaatcccagcactttgggaggccaacgtgggcaaatcccaaggtcaggaattcaagaccagcctggccaacatggtgaaacc-ccctccctactaaaaatacaaaaacattagcatctgggcatagtggtgggtttctgtaatcccagcttctcagaaggctgaggcaggagaatcacttgaatgacttgaacctggaggtggaggatgcagtgagccgagatcacgcaactgcataccagcccaggcctgggcaacagagtgagactctgtctc-----aaaaaaaaaaaaaa-----a
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91581933 1156 +  98207768 I
e canFam3.chr31              28071872 189 +  39895921 I

a score=277788.000000
s hg38.chr21_GL383581v2_alt     60843 81 +    116689 aaaCCTCCTGATGGTATAAGGAAATGATGTAATCTTAATGTTTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
s panTro4.chr21              19564979 81 +  32799110 aaaCCTCCTGACGGTATAAGGAAATGATGTAATCTTAATGTTTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34463269 80 +  48394510 aaaCC-CCTGACGGTATAAGGAAATGATGTAATCTTAACGTTTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19999384 74 +  32716333 aaaCCTTCTGACGGTATAAGGAAATGATGTAATC-------TTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185163277 81 - 198365852 aaaCCTCCTGACAGTATAAGGAAATGATGTAATCTTAATGTTTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002351 81 - 192294377 aaaCCTCCTGACAGTATAAGGAAATGATGTAATCTTAATGTTTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167386603 81 - 180432695 aaacctccTGACAGTATAAGGAAATGATGTAatcttaatgtttaa---tattttttaattgttaaaagaCATCCATAAAAAGCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31659422 81 -  90373283 aaaCCTCCTGACAGTATAAGGAAATGATGTAATCTTAATGTTTAA---TATTTTTTAATTGTTAAAAGACATCCATAAAAAGCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37464540 83 +  50472720 aaaCCTTCTGGCAGTATAAGGAAATTATGTAATCTTAATGTTTAA-TTTTTTTTTTAATCATTAAAAGACATCCATAAAAAGCT
i calJac3.chr21             C 0 I 594
s canFam3.chr31              28072061 84 +  39895921 ATAACTCTTTACAGTATAAGGAAGTTATGTAATCTTAACGTTTTAACATATTTTAAAATTAATAAAAGATATCCACAGAAAGTT
i canFam3.chr31             I 189 C 0
e mm10.chr16                 91581933 1156 +  98207768 I

a score=400805.000000
s hg38.chr21_GL383581v2_alt     60924 134 +    116689 TCCAAGCTTTTTTATGAAATGAGG--TAACA--TAAACTTAAAAATAATTTAAT-AAAAACAAAAGCCACAAACAAATCTCTTTTGAGGCCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTCAAGTAGCACAT
s panTro4.chr21              19565060 134 +  32799110 TCCAAGCTTTTTTATGAAATGAGG--TAACA--TAAACttaaaaataatttaat-aaaaaCAAAAGCCACAAACAAATCTCTTTTGAGGCCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTCAAGTAGCACat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34463349 133 +  48394510 TCCAAGCTTTTTTATGAAATGAGG--TAACA--TAAACttaaaaataatttaat-aaaaaCAAAAGCCACAAACAAATCTC-TTTGAGGCCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTTAAGTAGCACat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19999458 133 +  32716333 TCCATGCTTTTTTATGAAATGAGG--TAACA--TAAACTTAAAAATAATTTAAT-AAAAACAAAAGCCACAAACAAATCTC-TTTGAGGCCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTCAAGTAGCACAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185163358 125 - 198365852 TCCTAG---TTTTATGAAATGAGG--TAACA--TAAACttaaaaataattt------aaataaaaGCTACAAACAAATCTC-TTTGAGATCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTCAAGTAGCACat
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002432 125 - 192294377 TCCTAG---TTTTATGAAATGAGG--TAACA--TAAACTTAAAAATAATTT------AAATAAAAGCTACAAACAAATCTC-TTTGAGATCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTCAAGTAGCACAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167386684 126 - 180432695 TCCAAG---TTTTATGAAATGAGG--Taaca--taaacttaaaaataattt-----aaaataaaagctacaaaCAAATCTC-TTTGAGATCAGTCTTGCCTTTTCCTCTAACACTGGCAAACACAGCCAagtagcacat
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31659503 126 -  90373283 TCCAAG---TTTTATGAAATGAGG--TAACA--TAAACTTAAAAATAATTT-----AAAATAAAAGCTACAAACAAATCTC-TTTGAGGTCAATCTTGCCTTTTCCTCAAACACTGGCAAACACAGTCAAATAGCACAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37465217 134 +  50472720 TCCAAGCTCTTTTATGAAATGAGA--TAACA--GAAACCtaaaaataatttaataaaaaaCAAAACCCACAAACAAATCTC-TTTGAGGCCAATCTTGCCTTTTCCTCAAACACTGGCAAACAGAGTCAAGTAGCACAC
i calJac3.chr21             I 594 I 305
s canFam3.chr31              28072145 124 +  39895921 TCCAAACTCTTTTATGAAGTGAGATTTAACAGTTAAGCCCAAAAATGATTTAATAAAAAAGAAAAGCCATAGGCCAATCTCATTAGAGGCCAATCCCCCCTCCT-GTCAGCTACTGGCAAACACA--------------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91581933 1156 +  98207768 I

a score=545993.000000
s hg38.chr21_GL383581v2_alt     61058 178 +    116689 TAAAAAAAATAAAAATAATACTGCAAGGTAAAAGTTGAGTGTACTACAACACCTACGG-GTGATTTACTACTAAAAAAATGCAGAAACGTAAcatgtttcatgaaatctcaga-gccatcag---ttttaagatacaccattaatttttaatactgacaagaaataaaaatgttatcaattat
s panTro4.chr21              19565194 177 +  32799110 taaaaaaaataataataataCTGCAAGGTAAAAGTTGAGTGTACTACAACACCTACGG-ATGATTTACTACTAAAAAA-TGCAGAAACGTAAcatgtttcatgaaatctcaga-gccatcag---ttttaagatacaccattaatttttaatactgacaagaaataaaaatgttatcaattat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34463482 177 +  48394510 taaaaaaaataataataataCTGCAAGGTAAAAGTTGAGTGTACTACAACACCTACAG-ATGATTTACTACTAAAAAA-TGCAGAAACGTAAcatgtttcatgaaatctcaga-gccatcag---ttttaagatacaccattaatttttaatactgacaagaaataaaaatgttatcaattat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19999591 175 +  32716333 taaaaataataataataataCTGCAAGGTAAAAGTTGAGTGTACTACAACACCTACAG-ATGATTTACTACTAAAAAA-TGCAGAAACGTAACATGTTTCATGAAATCTCAGA-GCCATCAG---TTTTAAGATACACCATTTAATTTTTATACTGAC-AGAAAT-AAAATGTTATCATTTAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185163483 177 - 198365852 t-aaaaaaataataataataCTGCAAGGTAAAAGTTGAGTGTACTACAACACCTATGG-ACGATTCACTACTAAAAAA-CACAGAAACGTAAcgtgtttcattaaatctcagaggccatgag---ttttaagatacaccattaatttttaatactgacaagaaataaaaatgttatcaattat
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002557 177 - 192294377 T-AAAAAAATAATAATAATACTGCAAGGTAAAAGTTGAGTGTACTACAACACCTATGG-ACGATTCACTACTAAAAAA-CACAGAAACGTAAcgtgtttcattaaatctcagaggccatgag---ttttaagatacaccattaatttttaatactgacaagaaataaaaatgttatcaattat
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167386810 177 - 180432695 t-aaaaaaaaaataataatactgcaAGGTAAAAGTTGAGTGTACTACAACACCTATGG-ACGAttcactactaaaaaa-tacagaaatgtaacGTGTTTCATTAAATCTCAGAGGCCATGAG---TTTTAAGATACACCATTAATTTTTAATGctgacaagaaataaaaatgttatcaatTAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31659629 167 -  90373283 TAAAAAAAATAATAATAATACTGCAAGGTAAAAGTTGAGTGTACTCCAACACCTATGG-ACGATTCACTACTAAAAAA-TACAGAAATGTAACGTGTT----------TCagaggccatgag---ttttaagatacaccattaa-ttttaatactgacaagaaataaaaatgttatcaattat
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37465656 178 +  50472720 TAATAATAATAATAATGACACTCCAAGGTAAAAGTTGAGTGTATTACAACACCTAGGG-ATGATTTACTACTAAAAAA-TACAGAAATGTAAcatgtttcattaaatctcagaggccatcag---ttttaagatacaccattactttttaatactgacaagaaataaaaatgttattgattat
i calJac3.chr21             I 305 C 0
s canFam3.chr31              28072269 176 +  39895921 ---AAAAAATA--AATTATTCTCCATGCTAAAAGTTCCATGTGTTACAATACTCAAGGAATGATTCTCTAAAAAACAA-TCTAGAAATGTAAcatatttcattaaatctaagatgccactgatttttttatgatccatgattattttttt-taccaccaagaaaaaggaatattatcaattGT
i canFam3.chr31             C 0 I 258
e mm10.chr16                 91581933 1156 +  98207768 I

a score=54666.000000
s hg38.chr21_GL383581v2_alt     61236 23 +    116689 aattct----------aagatac--------cactgactgt
s panTro4.chr21              19565371 23 +  32799110 aattct----------aagatac--------cactgactgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34463659 23 +  48394510 aattct----------aagatac--------cactgactgt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              19999766 23 +  32716333 AATTCT----------AAGATAC--------CACTGACTAT
i nomLeu3.chr25             C 0 I 297
s rheMac3.chr3              185163660 41 - 198365852 aattctaattatactaaatatactaattatatactgactgc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002734 41 - 192294377 aattctaattatactaaatatactaattatatactgactgc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167386987 41 - 180432695 AATtctaattatattaaatatactaaTTATATACTGACTGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31659796 41 -  90373283 aattctaattatactaaatatactaattatatactgactac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37465834 23 +  50472720 aattct----------aagatgc--------cactgactgt
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28072703 23 +  39895921 aattat----------aaggtaa--------cactgactat
i canFam3.chr31             I 258 C 0
e mm10.chr16                 91581933 1156 +  98207768 I

a score=525284.000000
s hg38.chr21_GL383581v2_alt     61259 170 +    116689 aagatgcatcctgatattcagaggtattaaaatgcgaaaaagtagatcttgcaactgacaaaatatgTAACTGACCAGA-TTTAAAAATATGAGG-aaaaaaaaaaatcacaagataattgttataggtgctaaaaagatatatgaccaaatccaacactcattcttggtt---a
s panTro4.chr21              19565394 169 +  32799110 aagatgcatcctgatattcagaggtattaaaatgcgaaaaagtagatcttgcaactgacaaaatatgtaactgaccaga-tttaaaaatatgagg-aaaaaaaaaa-tcacaagataattgttataggtgctaaaaagatatatgaccaaatccaacactcattcttggtt---a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34463682 169 +  48394510 aagatgcat-ctgatattgggaggtattaaaatgcgaaaaagtagatcttggaactgacaaaatatgTAACTGaccaga-ttaaaaaatatgagg-aaaaaaaaaaatcacaagataatcgttataggtgctaaaaagatatatgaccaaatccaacactcattcttggtt---a
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20000086 168 +  32716333 aagatgcatcctgatattcggaggtattaaaatgtgaaaaagtagatcttggaactgacaaaatatgTAACTGaccaga-ttaaaaaatatgagg-aaaaaaaaa--tcacaagataattgttataggtgctaaaaagatatatgacgaaatccaacactcatttctggtt---a
i nomLeu3.chr25             I 297 C 0
s rheMac3.chr3              185163701 171 - 198365852 aagatgcatcctgatattcagaggtattaaaatgcgaaaaagtagatcttggaactgacaaaatatgtaactgaccaga-ttaaaaaatatgagg-aaaaaaaaa--tcacaagataatcgttataggtgctaaaaagatatatgcccaaatcccacactcattcttggttaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002775 171 - 192294377 aagatgcatcctgatattcagaggtattaaaatgcgaaaaagtagatcttggaactgacaaaatatgtaactgaccaga-ttaaaaaatatgagg-aaaaaaaaa--tcacaagataatcgttataggtgctaaaaagatatatgcccaaatcccacactcattcttggttaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387028 170 - 180432695 AAGATGCATCCTGATATTCAGAggtattaaaatgcaaaaaagtagATCTTGGAACTGACAAAATATGTAACTGACCAGA-Ttaaaaaatatgagg--aaaaaaaa--tcacaagataaTCGTTATAGGTGCTAAAAAGATATATGCCCAAATCCAACACTCattcttggttaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31659837 172 -  90373283 aagatgcatcctgatattcagaggtattaaaatgtgaaaaagtagatcttggaactgacaaaatGtgtaactgaccaga-ttaaaaaatatgaggaaaaaaaaaa--tcacaagataatcgttataggtgctaaaaagatatatgcccaaatccaacactcattcttggtttaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37465857 160 +  50472720 aaaatgcatcctgatatt--gaggtattaaaatataaaaa---aaatcttgaacc---aaaaatatgtaactgaccagatttttaaaatatgaga-aaaaaaa----tcataagataatctttatagatgctaaaaagatatctgatcaaatccaacactcattctttgttt--t
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28072726 164 +  39895921 aagaagcactcccatattcagaaatattcaaatataaaaaa--taatcttgggactgataaaatacagTACTGaccag--tttaacaatattata-agaagaaaaa-tcatgtgataatc--tatagatgctaaaaagatatgtgactaaattcaacactcattcttgattt---
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91581933 1156 +  98207768 I

a score=313331.000000
s hg38.chr21_GL383581v2_alt     61429 93 +    116689 aaaaaaatcgtaataaaatggg---aatTATGTATGTATCATGTTAAAAAATAGTCTATCAAATAAATTAAAAAGTTATTCAAGAAAGCACTGCAC
s panTro4.chr21              19565563 93 +  32799110 aaaaaaatcgtaataaaatggg---aatTATGTATGTATCATGTTAAAAAATAGTCTATCAAATAAATTAAAAAGTTATTCAAGAAAGCACTGCAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34463851 93 +  48394510 aaaaaaatcgcaataaaatggg---aatTATGTATGTATCATGTTAAAAAATAATCTATCGAATAAATTAAAAAGTTATTCAAGAAAGCACTGCAC
i ponAbe2.chr21             C 0 M 420
s nomLeu3.chr25              20000254 93 +  32716333 aaaaaaatcctaataaaatggg---aatTATGTATGTATCATGTTAAAAAATAATCTATCAAATAAATTAAAAAGTTATTCAAGAAAGCACTGCAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185163872 81 - 198365852 aaaaaaatcgtaataaaatggg---aatTATGTATGCATCATGTTAAAAAATAATCTATCAAATAAATCAAAAAGTTATTCAAG------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179002946 93 - 192294377 aaaaaaatcgtaataaaatggg---aatTATGTATGCATCATGTTAAAAAATAATCTATCAAATAAATCAAAAAGTTATTCAAGAAAGCACTGCAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387198 89 - 180432695 aaaaaaatcgtaataaaatggg---aattatgtatgcatcatgttaaaaaata----atcaaataaatcaaaaaGTTATTCAAGAAAGCACTGCAC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660009 93 -  90373283 aaaaaaatcctaataaaatggg---aatTATGTATGCATCATGTTAAAAAATAATCTATCAAATAAATCAAAAAGTTATTCAAGAAAGCACTGCAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37466017 93 +  50472720 aaaaaaatcgtaaaaaaatggg---aatTATGTATGTAATATGTTTAAAAAGAATCTATCAATTAAATTAAAAAGTTATTCAAGAAAGCACTGCAC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91583089 91 +  98207768 aaaaaaaaaAAAAGGGGGTGGG---GACTA--AATTCATCATGTTAAAGAAGAGCCCATCAATAAAGTTTAGAAGTTGGTTaaaacaaaacaaaac
i mm10.chr16                I 1156 I 31
s canFam3.chr31              28072890 90 +  39895921 -ttaaaatcttaataaaatgggGAAAAATATATATTTATCATGTCAAAGAAGAATCCATTGATTA--TTAAAAGGTTATTCCAGATATTAAAA---
i canFam3.chr31             C 0 C 0

a score=705246.000000
s hg38.chr21_GL383581v2_alt     61522 211 +    116689 ATTAACAG-----GAAA--GTATTTTTAGAAAAATCACCTTGAATAGAGAATTATCTTCATACTTACATGAAGAAAGCCAATGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCACTGA---AACATTAAAACTC
s panTro4.chr21              19565656 211 +  32799110 ATTAACAG-----GAAA--GTATTTTTAGAAAAATCACCTTGAATAGAGAATTATCTTCATACTTACATGAAGAAAGCCAATGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCACTAA---AACATTAAAACTC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20000347 211 +  32716333 ATTAACGG-----GAAA--GTATTTTTAGAAAAATCATCTTGAATAGAGAATTATCTTCATACTTACATGAAGAAAGCCAACGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCACTGA---AACATTAAAACTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185163953 191 - 198365852 ---------------------------AGAAAAATCATATTGATTACAGAATTATCATTATACTTACATGAAGAAAGCCAATGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCACTGA---AACACTGAAACTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003039 211 - 192294377 ATTAACAG-----GGAA--GTATTTTTAGAAAAATCATATTGATTACAGAATTATCATCATACTTACATGAAGAAAGCCAATGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCACTGA---AACACTGAAACTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387287 211 - 180432695 ATTAACAG-----Gaaa--gtatttttagaaaaatcataTTGATTACAGAATTATCATCATACTTACATGAAGAAAGCCAATGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTgtaaaaaacttaaaacacagCCCAAGTCACTGA---AACACTGAAACTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660102 211 -  90373283 ATTATCAG-----GAAA--GTATTTTTAGAAAAATCATATTGAATACAGAATTATCATCATACTTACATGAAGAAAGCCAAGGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCACTGA---AACACTGAAACTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37466110 211 +  50472720 ATTAACAG-----GAAA--ATGTTTTTAGAAAAATCATCTTGAATAGAGAATTATCTTCATACTTACATGAAGAAAGCCAATGTGGAAAATACACCACATGTGTGAAAGGCATGGTTCAACTGTTCTGGCTTAGGATACACCACAGCTGCATCAATCATTATCCACCAGCCTGTAAAAAACTTAAAACACAGCCCAAGTCATTGA---AACACTAAAACTC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91583211 210 +  98207768 ACTAGCAGTTGAAGAGG--ACGATTTTCGAAAAGCAATACTGACTTGAGAATCA-CATCACACTCACATGAAGAAGGCCAGCGTGGAAAACACACCGCACGTGTGGAAAGCGTGGTTCAGCTGCTCAGGCTTAGGGTACACCACTGCCGCGTCAATCATTATCCACCAGCCTGTAAAAAACT----GCAGAGCCCAAGACGGCAG---GAC-TTGAAACTC
i mm10.chr16                I 31 I 2989
s canFam3.chr31              28072980 216 +  39895921 ACTATAAG-----GAAAACATGTTTTTTGGAAAACAATCTTGAATTAAGAATTATTTTCATACTTACATGAAGAAAGCCAATGTGGAGAACACACCACACGTGTGAAAGGCATGGTTTAACTGCTCTGGCTTAGGGTACACCACGGCAGCATCAATCATTATCCACCAACCTGTAAAAAACTTGTGCAAGAGCCCAAGTCATTAAAATAACACTACCACTT
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34463944 420 +  48394510 M

a score=167015.000000
s hg38.chr21_GL383581v2_alt     61733 57 +    116689 TTGC-TAGCACAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
s panTro4.chr21              19565867 57 +  32799110 TTGC-TAGCACAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20000558 57 +  32716333 TTGC-TAGCACAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAACG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185164144 57 - 198365852 TTGC-TAGCATAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003250 57 - 192294377 TTGC-TAGCATAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387498 57 - 180432695 TTGC-TAGCACAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660313 57 -  90373283 TTGC-TAGCACAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37466321 57 +  50472720 TTGC-TAGCACAA---TACCTGCTTTTTAACATTCCTTTTGTCCTACAGATCATATAAATG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28073196 61 +  39895921 TGGCTTAGCATGAAGTTACTTGCTCTGTAAAATTCCTATATTTCTACAGACCATATAAATG
i canFam3.chr31             C 0 I 1102
e mm10.chr16                 91583421 2989 +  98207768 I
e ponAbe2.chr21              34463944 420 +  48394510 M

a score=280219.000000
s hg38.chr21_GL383581v2_alt     61790 124 +    116689 ggctgggtgcagaggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggattacttgaggtcaggagttca-----agcctggtcatcatggtaaaacctcatctcttctaaaaataca
s panTro4.chr21              19565924 124 +  32799110 ggccaggtgcagaggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacttgaggtcaggagttca-----agcctggtcatcatggtaaaacctcatctcttctaaaaataca
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20000615 124 +  32716333 ggctgggtgcagaggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacttgaggtcaggagttcg-----agcctggccatcatggtaaaacctcacctctaataaaaataca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185164201 129 - 198365852 ggccaggtacaaaggctcacgcctgtaatctcagcactttgggaggccgaggcaggtggatcacttgaggtcaggagttcgagaccagcctggccatcatggtgaaacctcacctctactaaaaataca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003307 129 - 192294377 ggccgggtacaaaggctcacgcctgtaatctcagcactttgggaggccgaggcaggtggatcacttgaggtcaggagttcgagaccagcctggccatcatggcgaaacctcacctctactaaaaataca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387555 129 - 180432695 GGCCGGGTAcaaaggctcacgcctgtaatctcagcactttgggaggccgaggcaggtggatcacttgaggtcaggagttcgagaccagcctggccatcatggtgaaacctcacctctactaaaaataca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660370 129 -  90373283 ggctgggtgcaaaggctcacgcctgtaatcccagcactttgggaggccgagtcaggtggatcacttgaggtcaggagttcgagaccagcctggccatcatggtgaaacctcacctctactaaaaatata
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37466378 127 +  50472720 ggccggg-gcagaggctcatgcctataatcccagcactttggga-gccaacacaagtgaatcaactgaggtcaggaattccagaccagcctggacatcatggtgaaaccctgtctctactaaaaacaca
i calJac3.chr21             C 0 I 1226
e mm10.chr16                 91583421 2989 +  98207768 I
e canFam3.chr31              28073257 1102 +  39895921 I
e ponAbe2.chr21              34463944 420 +  48394510 M

a score=44718.000000
s hg38.chr21_GL383581v2_alt     61914 24 +    116689 aggccgggcgca-gtg-ctgacatct
s panTro4.chr21              19566048 25 +  32799110 aggccgggcgca-gtggctgacatct
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20000739 25 +  32716333 aggccgggtgcg-atggctcacgtct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185164330 25 - 198365852 aggctgggcgtc-gtggctcacgtct
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003436 25 - 192294377 aggctgggcgtc-gtggctcacgtct
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387684 25 - 180432695 aggctgggcgtc-gtggctcacgtct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660499 25 -  90373283 aggctgggcgtc-gtggctcacgtct
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37467731 26 +  50472720 Aggccaggcaccggtggctcacacct
i calJac3.chr21             I 1226 C 0
e mm10.chr16                 91583421 2989 +  98207768 I
e canFam3.chr31              28073257 1102 +  39895921 I
e ponAbe2.chr21              34463944 420 +  48394510 M

a score=1130461.000000
s hg38.chr21_GL383581v2_alt     61938 396 +    116689 gtaatcccagcactttgggaggccaacacgcgcaaatcacctgaggtcaggagtttgagaccagtctggtcaacatggtgaaatctcgtttctactaaaa---------------------------------------------------------gtacaaaaattagctgggcatggtggcaggcacctgtaatcccagctacttgggaggctgaagcaggagaatcgcttaaacccaggaggtggaggctgcaatgagctgagatcacgccactgcactccagcctggacgacagaacgagactctgtctcaaaaacattcaaatataaat------acaaaaattagctgggcatggtggcatgtgcctctaatcctagctacttgggaggctgaggcacaagaattgcttgaacctgggaagtcagaggcggagactgcagtgagcagaCTGC
s panTro4.chr21              19566073 395 +  32799110 gtaatcccagcactttgggaggccaacacgggcaaatcacctgaggtcaggagtttgagaccagtctggtcaacatggtgaaacctcgtttctactaaaa---------------------------------------------------------gtacaaaaattagctgggcatggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttaaacccaggaggtggaggctgcaatgagctgagatcatgccactgcactccagcctggacgacagaacgagactctgtctcaaaaatattcaa-tacaaat------acaaaaattagttgggcatggtggcatgtgcctctaatcctagctacttgggaggctgaggcacaagaattgcttgaacctgggaagtcagaggcggagactgcagtgagcagaCTGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34464364 392 +  48394510 gtaatcccagcactttgggaggccaacacgggcaaatcacctgaggtcaggagtttgagaccagtctggtcaacatggtgaaacctcgtttctactaaaa---------------------------------------------------------gtacaaaaattagctgggcatggtggcaagcacctgtaatcccagctactcgggaggctgaggcaggagaatcgtttaaacccaggaggtggaggctgcaatgagctgagatcacgccactgcactccagcctggacaacagaacgaga--ctgtctcgaaaaCATTCAAATAC-aat------acaaaaattagctgggcacggtggcatgtgcccctaatcctagctacttgggaggctgaggcacaagaatcgcttgaacctgggaagtcagaggcggag-ctgcagtgagcAAACTGC
i ponAbe2.chr21             M 420 C 0
s nomLeu3.chr25              20000764 402 +  32716333 gtaatcccagcactttgggaggccaacacaggcaaatcacctgaggtcaggagtttgagaccagtctggtcaacatggtgaaacctcgtttctactaaaa---------------------------------------------------------gtacaaaaattagctgggcatggtggcaggcacctgtaattccagctactcgggaggctgaggcaggagaattgcttaaacccaggaggtgaaggcttcaatgagctgagatcacgccactgcactccagcctggacaacagaacgagactctgtcgcgaaaacatttaaatacaaatacaaaaacaaaaattagctgggcatggtggcgtgtgcctctaatcctagctacttgggaggctgaggcacaagaatcgcttgaacctgggaagtcagaggcagaggctgcagtgagcagaCTGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185164355 396 - 198365852 gtaatcccagcactttgggaggccaacacggccaaattgcctgaggtcaggaatttgagaccagtctggtcaacatggtgaaaccttgtctctactaaaa---------------------------------------------------------gtacaaaaattaactaggcatggtggcaggcacacataatcctgcctactcaggaggctgaggcaggagaatctcttgaacccaggaggtggaggctacaatgagctgagatcacgccactgcactccagcttggatgacagagtgaaactctgtctcgaaaaaattcaaatacaaat------acaaaaattagctgggcatggtggcatgtgcttctaatcctagctactttggaggctgaggcacaagaactgcttgaacctgggaagtcggaggcagaggccgcagtgagcagaCTGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003461 396 - 192294377 gtaatcccagcactttgggaggccaacacgggcaaattacctgaggtcaggaatttgagaccagtctggtcaacatggtgaaaccttgtctctactaaaa---------------------------------------------------------gtacaaaaattaactaggcatggtggcaggcacacataatcctgcctactcaggaggctgaggcaggagaatctcttgaacccaggaggtggaggctacaatgagctgagatcacgccactgcactccagcttggatgacagagtgaaactctgtctcgaaaaaattcaaatacaaat------acaaaaattagctgggcatggtggcatgtgcttctaatcctagctactttggaggctgaggcacaagaactgcttgaacctgggaagtcggaggcagaggccgcagtgagcagaCTGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167387709 396 - 180432695 gtaatcccagcactttgggaggccaacacaggcaaattacctgaggtcaggaatttgagaccagtctggtcaacatggtgaaaccttgtctctactaaaa---------------------------------------------------------gtacaaaaattaactaggcaggGTGGCAGGCACACATAATCctgcctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggctacaatgagctgagatcacgccactgcactccagcttggatgacagagtgaaactctgtctcgaaaaaattcaaatacaaat------acaaaaattagctgggcatggtggcatgtacttctaatcctagctacttcggaggctgaggcacaagaactgcttgaacctaggaagtcggaggcagaggctgcagtgagcagactGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660524 394 -  90373283 gtaatcccagcactttgggaggccaacacgggcaaattacctgaggtcaggaatttgagaccagtctggtcaacatggtgaaacctcgtctctactaaaa---------------------------------------------------------gtacaaaaattaactaggcatggtggcaggcacacataatcctgcctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggctacaatgagctgagatcacgccactgcactccagcttggatgacggaatgaaa--ctgtctcgaaaaaattcaaatacaaat------acaaaaattagctgggcatggtggcatgtgcttctaatcctagctacttcggaggctgaggcacaagaattgcttgaacctgggaactcggaggcagaggctgcagtgagcagaCTGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37467757 448 +  50472720 gtaatcccagtactttgggaggccaaggcaggtggattacttgatgtcaggagtttgagaccagcctggctaatatgtcgaaacctcatctctactaaaaatacaaggctgggcagagtggctcacctgaggtcaggagttggagactctactaaacatacaaaaattagctgtgtggggcagtgggtgcctgtaattccagctgttcaggaggctgaggcaggagaattgcttggacctgggaggcggaggctgcagtgagctgagatcacaccactgtactccagcctgggcgacagaacgagactttgtctcaaaaaaaTTCAAAtacaaat------acaaaaattagctgggcgtggtggcgcgtagctgggctcccagctacttggtacgcttaggcacaagaattgcttaaacctgagaagtcagaggcggag-----agtgagcagattgc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91583421 2989 +  98207768 I
e canFam3.chr31              28073257 1102 +  39895921 I

a score=394652.000000
s hg38.chr21_GL383581v2_alt     62334 126 +    116689 TTCACAATTATCGTTAGTTCTTGCTCTGCTTCATTTCATTTTGTTTTTCTATTGGACTTTAGGTGTAGAACTGTACATTGAAAGAGATGAATTTTTAAAATGTAAACAGATAAAGAAATTTGCTTC
s panTro4.chr21              19566468 126 +  32799110 TTCACAATTATCGTTAGTTCTTGCTCTGCTTCATTTCATTTTGTTTTTCTATTGGACTTTAGGTGTAGAACTGTACATTGAAAGAGATGAATTTTTAAAATATAAACAGATAAAGAAATTTGCTTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34464756 125 +  48394510 TTCACAATTATCATTATTTCTTGCTCTGCTTCATTTCATTTTGTTTTTCTATTGGACTTTAGGTGTAGAACTGTATATTAAAAGAGATGAATTTTT-AAATATAAACAGATAAAGAAATTTGCTTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20001166 126 +  32716333 TTCGCAATTATCATTAGTTCTTGCTCTGCTTCATTTCATTTTGTTTTTCTATAGGACTTTGGGTGTAGAACTGTACATTGAAAGAGATGAATTTTTAAAACGTAAACAGATGAAGAAATTTGCTTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185164751 117 - 198365852 TTCACAATTATCGTTAGTTCTTGCTCTGCTTTATTTCA--------TTCTATTGGAC-TTAAGTGTAGAACTGTACATTCAAAGAGATGAATTTTTAAAATGTAAACAAATAAAGAAATTTGCTTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003857 117 - 192294377 TTCACAATTATCGTTAGTTCTTGCTCTGCTTTATTTCA--------TTCTATTGGAC-TTAAGTGTAGAACTGTACATTCAAAGAGATGAATTTTTAAAATGTAAACAAATAAAGAAATTTGCTTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167388105 117 - 180432695 TTCACAATTATTGTTAGTTCTTGCTCTGCTTTATTTCA--------TTCTATTGGAC-TTAAGTGTAGAACTGTACATTCAaagagatgaatttttaaaatgtaaacaaataaagaaatttgcTTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31660918 117 -  90373283 TTCACAATTATCGTTAGTTCTTGCTCTGCTTTATTTCA--------TTCTATTGGAC-TTAAGTGTAGAACTGTACATTCAAAGAGATGAATTTTTAAAATGTAAACAAATAAAGAAATTTGCTTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37468205 126 +  50472720 ttcacAATGATCATTAGTTCTTGCTCTGCTTTATTACATTTTGTTTTTCTATTGGACTTTGGGTGTAGAACTGTACACCGAAAAAGATGAATTTTTAAAATGCAAACAGATAAAGAAATTTGCTTC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28074359 122 +  39895921 TTCACAATTATCTTTAATTCCTGCTCTGGGTTATTTAT---TTTTTTTCTACTAGACCTCAGGTAtagaactgtatactgaaagagatacattttaaaaatgt-aatggatactgaaattggcttc
i canFam3.chr31             I 1102 C 0
e mm10.chr16                 91583421 2989 +  98207768 I

a score=519550.000000
s hg38.chr21_GL383581v2_alt     62460 196 +    116689 CAAAAAATGCTGTGGGAgccaggaatggtagtat---gaacctgtagtcccagctacctgggagactgaggcaggaagattgcttgagaccatgaatttgaagctgtagtatactacgaccacatctgtaaatagcaactgtactctagtagctgtacaacatagc----aagacctcgtctcttt--------aaaaaaaaaaaaaaaaa
s panTro4.chr21              19566594 193 +  32799110 CAAAAAATGCTGTGGGAgccaggaatggtagtat---gaacctgtagtcccagctacctgggagactgaggcaggaagattgcttgagaccatgaatttgaagctgtagtatactacgaccacatctgtaaatagcaactgtactctagtagctgtacaacatagc----aagacctcgtctcttt--------aaaaaaaaaaaaaa---
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34464881 193 +  48394510 CAAAAAATGCTGTGGGAgccaggaatggtagtat---gaacctgtagtcccagctacctgggagactgaggcaggaagattgcttgagaccattaatttgaagctgtagtatactaggatcacacccataaatagcaactgtactctagtagctgtacaacatagc----aagacctcgtctcttt--------aaaaaaaaaaaaaa---
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20001292 193 +  32716333 CAAAAACTGCTGTGGGAgccaggaatggtagtat---gaacctgtagtcccagctacctgggagactgaggcaggaagattgcttgagaccatgaatttgaagctgtagtatactacgatcacacttgtaaatagcaactgtactctagtagctgtacaacacagc----aaaaccttgtttcttt--------aaaaaaaaaaaaaa---
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185164868 204 - 198365852 CAAAAAATGCAGTGGGAGCCAGAAATGGTAGTGTAGAAAATctgtagtcccagctacttgggagactgaagcaggaagattgcttgagaccatgaatctgaagccgtagcacactacaatcatacctgtgaatagccactgtactccagtggctgtacaacatagc----aagaccttgtctcttttaaaaaaaaaaaaaaaaaaaaa---
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179003974 195 - 192294377 CAAAAAATGCAGTGGGAGCCAGAAATGGTAGTGTAGAAAATctgtagtcccagctacttgggagactgaagcaggaagattgcttgagaccatgaatctgaagccgtagcacactacaatcatacctgtgaatagccactgtactccagtggctgtacaacatagc----aagaccttgtctctttt---------aaaaaaaaaaaa---
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167388222 193 - 180432695 CAAAAAATGCAGTGGGAGCCAGAAATGGTAGTGTAGAaaatctgtagtcccagctacttgggagactgaagcaggatgattgcttgagacCATGAATTTGAAGCCGTAGCACACTACAATcatacctgtgaatagccactgtactccagtggctgtacaacatagc----aagaccttgtctcttt-----------aaaaaaaaaaa---
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661035 201 -  90373283 CAAAAAATGCAGTGGGAGCCAGAAATGGTAGTGTAGAAAAcctgtagtcccagctacttgggagactgaggcaggaagattgcttgagatcatgaatctgaagtcgtagcacactacaatcatacctgtgaatagccactgtactccagtggctgtacaacatagc----aagaccttttctcttt---aaaaaaaaaaaaaaaaaaa---
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37468331 189 +  50472720 CAAAAAATGCAGTGGGAgccaggaatggtagtgt---gaa-------tcccagctatttgggagactgc--caggaagattgcttgaggccacgaatttgaagctgtagtatactgtaatcacacctgtaaatagctactgtattccagt--ctggataacatagcaagaaagacctcatctcttt--------aaaaaaaaaaaaaaaaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91583421 2989 +  98207768 I
e canFam3.chr31              28074481   0 +  39895921 C

a score=923955.000000
s hg38.chr21_GL383581v2_alt     62656 318 +    116689 aaaa-aGTGCGGACAGAGAGTGGTTGATGGAATTATAAACCAAGATAGGTCCTGATTTTGGGGTGTT-------TTTttttttaagctggatgatagacacatgggataaaggaggtgatggaatctttataccattctctctgcttttgttt------tatgcctgtcattttcaat----taaagttaaaaaaa--------TGATGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATCTCTTCCTCTGATGCTCCCCTG---ATGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCCGCTGCAGGGCTTCAGTTCCAATGGAGCCTAAGGT
s panTro4.chr21              19566787 313 +  32799110 ------GTGCGGACAGAGAGTAGTTGATGGAATTATAAACCAAGATAGGTCCTGATTTTGGGGTGTTG----TTTTTttttttaagctggatgatagatacatgggataaaggaggtgatggaatctttatacctttctctctgcttttgttt------tatgcctgtcgttttcaat----taaagttaaaaaaa-------aTGATGGAAAGAAAATTAA----TAGTTTCCTTCACAAATGTCTTCCTCTGATGCTCCCCTG---ATGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCCGCTGCAGGGCTTCAGTTCTAATGGAGCCTAAGGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34465074 311 +  48394510 -----aGTGCGGACAGGGAGTGGTTGATGGAATTATAAACCAAGATAGGTCCTGATTTTGG---GTT-------TTTTTTTTTAAGCTGGATGATAGATACATGGGATAAAGGAGGTGACGGAACCTTTATACCATTCTCTCTATTTTTGTTT------TATGCCTGTCATTTTCAAT----TAAAGTTAAAAAAA--------AGATGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATGTCTTCCTCTGATGCTCCCCTG---ATGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCTGCTGCAGCGCTTCAGTTCTAATGGAGCCTAAGGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20001485 315 +  32716333 ------GTGTGGACagggagtggttgatggaattgtaaaccaagataggtcctgattttggggtatt------ttttttttttaagctggatggtagatacatgggataaagtaggagacagaacctgtatatcactctctctacttttgttt------tatgcctgtcattttcaat----taaagttaaaaaaa-------aTGATGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATGTCTTCCTCTGGTGCTCCCCCA---ATGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGTCGCTGCAGGGCTTCAGTTCTAATGGAGCCTAAGGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185165072 325 - 198365852 ------GTGCGGCCAGGGAGTGGTTGATGGAATTATACAGCAAGACAGGTCCTGATTTTGGGGTGGTGGTG-TTTTTttttttaagctggatgatagatacatgggataaaggaggagacggaacctttataacattctgcctacttttgttt------tatgcttgtcattttcaataataaaaagttaaaaaaa------aaTGATGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATGTCTTCCTCTGATATTCCCCTG---GTGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCGGCTATAGGGCTTCAGTTCTAATGGAGCCTAAGGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179004169 325 - 192294377 ------GTGCGGCCAGGGAGTGGTTGATGGAATTATACAGCAAGACAGGTCCTGATTTTGGGGTGGTGGTG-TTTTTttttttaagctggatgatagatacatgggataaaggaggagacggaacctttataacattctgcctacttttgttt------tatgcttgtcattttcaataataaaaagttaaaaaaa------aaTGATGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATGTCTTCCTCTGATATTCCCCTG---GTGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCCGCTATAGGGCTTCAGTTCTAATGGAGCCTAAGGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167388415 326 - 180432695 ------gtgcggcCAGGGAGTGGTTGATGGAATTATACAGCAAGACAGGTCCTGATTTTggggtggtggtgttttttttttttaagctggatGATAGATACATGGGATAAAGGAGGAGACGGAACCTTTATAACATTCTGCCTACTTTTGTTT------TATGCTTgtcattttcaataataaaaagttaaaaaaa------aatgatggaaagaaaattaaacaatagtTTCCTTCACAAATGTCTTCCTCTGATATTTCCCTG---GTGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCCGCTGTAGGGCTTCAGTTCTAATGGAGCCTAAGGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661236 295 -  90373283 ------GTGCGGCCAGGGAGTGGTTGATGGAATTATACAGCAAGACAGGTCCTGATTTTGGGGTGGTGGTG--TTTTTTTTTTAAGCTGGATGATAGATACATGGGATAAAGGAGGAGACAGAACCTTTATAACATTCTCTCTACTTTTGTTT------TATGCTT-----------------------------A------AATGATGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATGTCTTCCTCTGATATTCCCCTG---GTGTTGCAGCTGGGGA-AACAGAGATGGTATTTCTTCCCTAGAGCCGCTGTAGGGCTTCAGTTCTAATGGAGCCTAAGGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37468520 319 +  50472720 aaaGCAGTACGGACCGGGAGTGGTTGATGGAACTATAAAGCAAGATAGGTCCTGATTTTGG-GTGCT-----TTTTTTTTTTAAAGCTGGATGATAGGTACATGGAATAAAAGAGGAGATGGAACCTTTGTACCATTCTCT----TTTTGTTT------TATGCTTGTCATTTTCAATAGTAAAAAGGTTAAAAAA--------TTGTGGAAAGAAAATTAAACAATAGTTTCCTTCACAAATGTCTTCCTCTTATGTTCGCC-A---GTGCTGCAGCTGAGGA-AACAGAGATGGTATTTCTTCCCTAGAGTCACTGCAGGGCTTCAGTTCTAACGTAGCCAAAGGT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28074481 312 +  39895921 -agaaactcagggcagggagtagatgatggaacactaaagcaagat-ggtcgtgat------------------ttttttctgaagctggactgtttgaacatgggat-------gagtagggttcttgatcccattctat----ttttgttgactgtacatgcttaacatgttttgtaataaaaaattgaaaaagaaAAAAAATGTTAGGAAGAAAACGAAGCAAGTGTTTCCTCCACAAATGTCTTCCTCT----CTTCCCTGTCAGAGCTGCAGCGGGGGGTAACTGGGCTGGGGTCCTTTCCCTAGAGC-ACTGCAGGGCTTCAGTTCTAACACAGCCTCAGGT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91583421 2989 +  98207768 I

a score=672651.000000
s hg38.chr21_GL383581v2_alt     62974 193 +    116689 TGTTACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGGGTTACATCAAATTCTGAGCCTTTAAGGATCTTAAAGTACT-----------TACAT-ATATGTTGTATCAGTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCACTGGAACTGAAGAAAAGATATTAAGT
s panTro4.chr21              19567100 193 +  32799110 TGTTACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGGGTTACATCAAATTCTGAGCCTTTAAGGATCTTAAAGTACT-----------TATAT-ATATGTTGTATCAGTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCACTGGAACTGAAGAAAAGATATTAAGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34465385 193 +  48394510 TGTTACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGGGTTACATCAAATTCTGAGCCTTTAAGGATCTTAAAGTACT-----------TATAT-ATATGTTGTATCAGTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCACTGGAACTGAAGAAAAGATATTAAGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20001800 193 +  32716333 TGTTACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGGGTTACATCAAATTCTGAGCCTGTAAGGATCTTAAAGTACT-----------TATAT-ATATGTTCTATCAGTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCAGTGGAACTGAAGAAAAGATATTAAGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185165397 191 - 198365852 CGTCACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGTGTTACATTAAATCCTGAGCCTTTAAGGATCTTAAAGTACT-----------TATAT-ACA--TTGTATCACTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCACTGAAACTGAAGAAAAGATATTAAGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179004494 191 - 192294377 CGTCACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGTGTTACATTAAATCCTGAGCCTTTAAGGATCTTAAAGTACT-----------TATAT-ACA--TTGTATCACTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCACTGAAACTGAAGAAAAGATATTAAGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167388741 191 - 180432695 TGTCACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGTGTTACATTAAATCCTGAGCCTTTAAGGATCTTAAAGTACT-----------TATAT-ACA--TTGTATCACTAAGTT-AAAAATGCTATTGcctataataattatattatcacTGAAACTGAAGAAAAGATATTAAGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661531 191 -  90373283 TGTCACTATTATCTGCAGAGT----ACTGTCACTGTTGTCTGACCTTCAATAAGTCACAACAATAATTTTGTGTTACATTAAATCCTGAGCCTTTAAGGATCTTAAAGTACT-----------TATAT-ACA--TTGTATCACTAAGTT-AAAAATGCTATTGCCTATAATAATTATATTATCACTGGCACTGAAGAAAAGATATTAAGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37468839 205 +  50472720 TGTTACCATTAACTGCAGAGT----ATCGTCACTGTTGTCTAACCTTCAATAAGTCACAATAATAATTTTGGGTTACATCAAATTCTGAGCCTTTAAGGATCTTAAAGTACTGCATGCAGTACTGTATCACATATTGTATCACTAAGTT-TAAAATGCCATTGCCTGTAATAATTATATTATCACTGGAACTGAGGAAAAGATATTAAAT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91586410 177 +  98207768 TGCTAACAACATCTGACGTGTCACCACTGTCGACATAACCTTGTCTTCAGTGAGTCAC---AGTGCCTCTGAGTGATATCCAATTCTGAGGCTGGAAGGACCACAAAGTACT-----------TACAG-ATA--CTGTCCCACTAAATG-GCAAAGGCTGTGG---------------TAAGTCCTGTAACTGAAGGGAAGATCCCAAAC
i mm10.chr16                I 2989 C 0
s canFam3.chr31              28074793 164 +  39895921 CCTTACTGCTATCTACACATC------------------CTGAATCTCAGTGAGTCACAACACTA--TTTGGTT---ATCAAATTCCAAGCCTCTGATGAGCTTACAGGACT-----------TATAT-------TGTATCATTAACTTAAAAAATGCTACTGCTTGTAATAATTGTATTATCACTTGAACTG-----AAGATATTAAGT
i canFam3.chr31             C 0 I 200

a score=108142.000000
s hg38.chr21_GL383581v2_alt     63167 29 +    116689 ACA---CATTTACAAAGTCAAAATGAATCCAG
s panTro4.chr21              19567293 29 +  32799110 ACA---CATTTACAAAGTCAAAATGAATCCAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34465578 29 +  48394510 ACA---TGTTTACAAAGTCAAAATGAATCCAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20001993 29 +  32716333 ACA---CGTTTACAAAGTCAAAATGAATCCAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185165588 29 - 198365852 ACA---CGTTTACAAAGTCAAAATGAATCCAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179004685 29 - 192294377 ACA---CGTTTACAAAGTCAAAATGAATCCAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167388932 29 - 180432695 ACA---CGTTTACAAAGTCAAAATGAATCCAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661722 29 -  90373283 ACA---CGTTTACAAAGTCAAAATGAATCCAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469044 29 +  50472720 ACA---CGTTTACAAAGTCAAAATAAATCCAG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91586587 31 +  98207768 TTAAGTCATTCTCAGAATCAAGG-GAACCCAG
i mm10.chr16                C 0 I 209
s canFam3.chr31              28075157 28 +  39895921 ACA---AATTTATAAAGTCAAACC-AACCCAG
i canFam3.chr31             I 200 C 0

a score=151334.000000
s hg38.chr21_GL383581v2_alt     63196 44 +    116689 ----GGCCTACCATATTCTGCTTGGCAATAGTATCTAGAACTCTGATA
s panTro4.chr21              19567322 44 +  32799110 ----GGCCTACCATATTCTGCTTGGCAATAGTATCTAGAACTCTGATA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34465607 44 +  48394510 ----GGCCTATCATATTCTGCTTGGCAATAGTATCTAGAACTCTGATA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002022 44 +  32716333 ----GGCCCACCATATTCTGCTTGGCAATAGTATCTAGAACTCTGATA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185165617 44 - 198365852 ----GGCCTACCATACTCTGCTTGGCAATAGTATCTAGAACTCTGATA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179004714 44 - 192294377 ----GGCCTACCATACTCTGCTTGGCAATAGTATCTAGAACTCTGATA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167388961 44 - 180432695 ----GGCCTACCATACTCTGCTTGGCAATAGTATCTAGAACTCTGATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661751 44 -  90373283 ----GGCCTACCATACTCTGCTTGGCAATAGTATCTAGAACTGTGATA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469073 44 +  50472720 ----GGCCTACCATATTCTGTTCGGCAGTAGTATCTAGAACTCTGATA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28075185 42 +  39895921 GGCTTGCTTACCATGTTTTGTTCAGCAA---TATCTAGAATTCTA---
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91586618 209 +  98207768 I

a score=336630.000000
s hg38.chr21_GL383581v2_alt     63240  99 +    116689 ATCATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACCGGCATTAATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAC------------------------------------------------
s panTro4.chr21              19567366  99 +  32799110 ATCATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACCGGCATTAATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAC------------------------------------------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34465651  99 +  48394510 ATTATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACCGGCATTAATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAA------------------------------------------------
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002066  99 +  32716333 ATTATCTATATAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACCGGCATTAATTTCCAGGGCAAAAGG----------------------------------------TAATGGATAA------------------------------------------------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185165661  99 - 198365852 ATTATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACTGGCATTGATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAA------------------------------------------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179004758  99 - 192294377 ATTATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACTGGCATTGATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAA------------------------------------------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389005  99 - 180432695 ATTATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACTGGCATTGATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAA------------------------------------------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661795  99 -  90373283 ATTATCTATACAAAACAGCAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGGAACTGGCATTGATTTCCAGGGCAAAAGG----------------------------------------TAAGGGATAA------------------------------------------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469117  99 +  50472720 ATTATCTATACAAAATAGTAGTGAAATAAATAGTTCTGGAAAGCCATTCTCAGTTCAAAGAAATCAACATTAATTTCCAGAGCAAAAGA----------------------------------------TAAGGCATAA------------------------------------------------
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91586827  87 +  98207768 ATTACCTATCCTCAACCGCAG----AGAGAGAGCTCTGGAAAGCTGTTCACCATTTAAGGACATTGACTTTAATT--------GGAATG----------------------------------------CAAAGCCGTG------------------------------------------------
i mm10.chr16                I 209 C 0
s canFam3.chr31              28075227 184 +  39895921 ATTATTCCTCTAAAATAACAGTGAAATAAACACTTCTGAAAAGGTATTCATGATCCAAAGGAATTGACA---ATTTTCAGGGCAAAgggatgcctgggtgactcagtggttgagcgtctgcctttgactcagggcatgatctctgggtcctgggatcaaatcccacattggggttcccaaggggagc
i canFam3.chr31             C 0 I 112

a score=1051343.000000
s hg38.chr21_GL383581v2_alt     63339 267 +    116689 ATGTCACCAACCAGTCTTTCTCACTTACCAATATACCTGCGACAACAGATGCCACAGCATTTCTTCTCTCACTCCAGTCAATACATTCACATTCTGGCCAACGAAAATTATCTAGGAAGCCTGCCATTTTTACTTCTTAAGCATAAATTTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACCTAAGAAAATGTTTTCTAAAAGTAAAATACCTTACTCCTTTCTTAAAGCTTTACACACAACTTTACTTT
s panTro4.chr21              19567465 267 +  32799110 ATGTCACCAACCAGTCTTTCTCACTTACCAATATACCTGCGACAACAGATGCCACAGCATTTCTTCTCTCACTCCAGTCAATACATTCACATTCTGGCCAACGAAAATTATCTAGGAAGCCTGCCATTTTTACTTCTTAAGCATAAATTTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACCTAAGAAAATGTTTTCTAAAAGTAAAATACCTTACTCCTTTCTTAAAGCTTTACACACAACTTTACTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34465750 267 +  48394510 ATGTCACCAACCAGTCTTTCTCACTTACCAATATACCTGCGACAACAGACGCCACAGCATTTCTTCTCTCACTCCAGTCAATACATTCACATTCTGGCCAACGAAAATTATCTAAGAAGCCTGCCATTTTTACTTCTTAAGCATAAATTTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACCCAAGAAAATGTTTTCTAAAAGTAAAATATCTTACTCCTTTCTTAAAGCTTTACACACAACTTTACTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002165 267 +  32716333 ATGTCACCAACCAGTCTTTCTCACTTACCAATATACCTGCGACAACAGACGCCACAGCATTTCTTCTCTCACTCCAGTCAATACATTCACATTCTGGCCAACGAAAATTATCTAGGAAGCCTGCCATTTTTACTTCTTAACCATAAATTTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACTTAAGAAAATGTTTTCTGAAAGTAAAATATCTTATTCCTTTCTTAAAGCTTTACACACAACTTTACTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185165760 249 - 198365852 ATGTCACCAGCCTGTCTTTCTCACTTACCAATATACCTGCGACAACAGATGCCACAGCATTTCTTCTCTCGCTCCAGTCAATACACTCACATTCTGGCCAACGAAAATTATCTAGGAAGCCTGCCATTTTTACTTCTTAAGCATAAATGTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACCCAAGACAATGTTTTCTAAAAGTAAAATATCTTACTCCTTT------------------ACTTTACTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179004857 249 - 192294377 ATGTCACCAACCTGTCTTTCTCACTTACCAATATACCTGCGACAACAGATGCCACAGCATTTCTTCTCTCGCTCCAGTCAATACACTCACATTCTGGCCAACGAAAATTGTCTAGGAAGCCTGCCATTTTTACTTCTTAAGCATAAATGTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACCCAAGACAATGTTTTCTAAAAGTAAAATATCTTACTCCTTT------------------ACTTTACTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389104 249 - 180432695 ATGTCACCAACCTGTCTTTCTCACTTACCAATATACCTGCGACAACAGACGCCACAGCATTTCTTCTCTCGCTCCAGTCAATACACTCACATTCTGGCCAACGAAAATTGTCTAGGAAGCCTGCCATTTTTACTTCTTAAGCATAAATGTTTCATTAAATGCTGTATCCtacaaacagaaagacaaaaactaatCAACCCAAGACAatgttttctaaaagtaaaatatcttaCTCCTTT------------------ACTTTACTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31661894 249 -  90373283 ATGTCACCAACCTGTCTTTCTCACTTACCAATATACCTGCGACAACAGACGCCACAGCATTTCTTCTCTCGCCCCAGTCAATACACTCACATTCTGGCCAACGAAAATTGTCTAGGAAGCCTGCCATTTTTACTTCTTAAGCGTAAATGTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAACTAATCAACCCAAGACAATGTTTTCTAAAAGTAAAATATCTTACTCCTTT------------------ACTTTACTTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469216 267 +  50472720 ATGTCACCAACCAGTCTTTCTCACTTACCAATATACCTGCTACAACAGACGCCACAGCATTTCTTCTCTCACTCCAGTCGATACATTCACATTCTGGCCAACGAAAATTATCTAGGAAGCCTGCCATTTTTACTTCTTAAGCATAAATTTTTCATTAAATGCTGTATCCTACAAACAGAAAGACAAAAGCTAATCAACCTCAAAAAATGTTTTCTAACAGTCTAATATCTTACTCCTTTCTTAAAGCTTTATACACAACTTTACTTT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91586914 230 +  98207768 ACATCACCAGTGCATCTATCTC-CTTACCAATATCCCTGCGACCACAGAGGCCACCGTGTTCCTGCGCTCGCTCCAGTCAATACACTCACACTCCGGCCAGCGGAAGTTATCCAGGAAGCCTGCCATCTTCACTCTGTACACATGGAGTTCTCATTAAACAATGGTTCCTAGAAATCAAAAGATAAAAAATAATCAGCCTAAACAAATGCTTTCTAAAAAT------------------------------------GATTTACTTT
i mm10.chr16                C 0 I 239
s canFam3.chr31              28075523 266 +  39895921 ATGTCACCAACCAGGCCTTTTCACTTACCAATATGCCTGCCACCACAGAAGCCACAGCATTTCTTCTCTCACTCCAGTCAATACATTCACATTCTGGCCAACGGAAATTATCGAGGAAGCCTGCCATTTTCACCCCGTAAGCATGGATTTTTCATTAAACTCTGTATTCGACAAATAAAAAGAAAAAAATATTCAAATCTAAGGAAATGTTTTTAAGAAGTGAAATATCTT-TTCCTTTCTTAAAGTTTTAAACAGAAATTGGCTTT
i canFam3.chr31             I 112 C 0

a score=744288.000000
s hg38.chr21_GL383581v2_alt     63606 246 +    116689 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATATAGGACTACGCTAGGACCCAAGGGGGAGCTTGCTATTTGATAAATGAGCACTATGGTTTTAAACCATGTCTAGGAGCTAGGTGCcgaggtggttcacgcctgtaattccagcactttgggaggccaaagtgggcagatcacttg-aggccaggagttcgagaccagcctggccaatattat-g
s panTro4.chr21              19567732 246 +  32799110 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATAGAGGACTACGTTAGGACCCAAGGGGGAGCTTGCTATTTGATAAATGAGCACTATGGTTTTAAACCATGTCTAGGAGCTAGGTGCcacggtggttcacacctgtaattccagcactttgggaggccaaagtgggcagatcacttg-aggccaggagttcgagaccagcctggccaatattat-g
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466017 246 +  48394510 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATACAGGACTATGCTAGGACCCAAGGGGGAGCTTGCTATTTGATAAATGAGCACTACGGTTTT-AACCACGTCTAGGAGCTAAGTGCcgcggtggctcacgcctgtaattccagcactttgggagggccaagtgggcagatcacttgaaggccaggagatcaagaccagcctggcc-atattatgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002432 246 +  32716333 AGGTCTTATTCTACTATAGTT----AAGAAAAATTCAGTACTTCAACAAGTACCTAATTGAGACATATATAGGACTATGCTAGGACCCAAGGGGGAGCTTGCTATTTGATAAATGAGCACTGTGGTTTTAAACCATGTCTAGGAGCTGGGTGCcgcggtggctcacgcctataattccagcactttgggaggccaaagtgggcagatcacttg-aggccaggagttcgagaccagcctgaccaatattat-g
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166009 243 - 198365852 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATACAGGACTACGCTAGGACACAAGGGGGAGATTGCTATTTGATAAATGAGCACTGTGGTTTTAAAACATGTCTAGGAGCTAGGTGAC---gtggctcacgcctgttattccagcactttgggaggccgaagtgggcagatcacttg-aggccaggagtttgagaccagcctggccaatattat-g
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179005106 243 - 192294377 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATACAGGACTACGCTAGGACACAAGGGGGAGATTGCTATTTGATAAATGAGCACTGTGGTTTTAAAACATGTCTAGGAGCTAGGTGAC---gtggctcacgcctgttattccagcactttgggaggccgaagtgggcagatcacttg-aggccaggagtttgagaccagcctggccaatattat-g
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389353 243 - 180432695 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATACAGGACTATGCTAGGACACAAGGGGGAGATTGCTATTTGATAAATGAGCACTGTGGTTTTAAAACATGTCTAGGAGCTAGGtgac---gtggctcacgcctattattccagcactttgggaggccgaagtgggcagatcacttg-aggccaggagtttgagaccagcctggccaatattat-g
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31662143 243 -  90373283 AGGTCCTATTCTACTATAGTT----AAGAAAAATTCAATACTTCAACAAATACCTAATTGAGATGTATACAGGACTACGCTAGGACACAAGGGGGAGATTGCTATTTGATAAATGAGCACTATGGTTTTAAAACATGTCTAGGAGCTAGGTGAC---gtggctcacgcctgttattccagcactttgggacgccgaagtgggcagatcacttg-aagccaggagtttgagaccagcctggccaatattat-g
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469483 243 +  50472720 AGGTCCTATTCTACTGCAGTT----AAGAAAAATTCAATACTTCAACAAGTACCTAATTGAGATGTATATAGGACAATGCTAGCACACATGGGGGAGGTTGCTATTTGATAAATGAGCACTCTGGTTTTAAAACATGTCTAGGAgctaggcgcg---gtggctcacgcctgtaatcacagcactttgggaggccaaggtgggcagatcacttg-aggccaagagttcgagaccagcctggccaatataac-a
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28075789 148 +  39895921 AGGTCCAGACCTA---GAGTTAAGGAAGAAAAATTAAATACTTTAATGAATACC-GACTGACATGTACACAGGATTGTGTTGGGACACAAGGGGAAGTTTACTATTTACAAAATGAGCCtgatggttttaaaacatgtctg-----------------------------------ccaattctctg-----------------------------------------------------------------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91587144 239 +  98207768 I

a score=183734.000000
s hg38.chr21_GL383581v2_alt     63852 89 +    116689 aaaccttgtctctactaaaaatacaaaaaattaactgggcgtggtggcacatgcctgtaatc---acagc------------tactcggga----ggctgaggaacaa
s panTro4.chr21              19567978 89 +  32799110 aaaccttgtctctactaaaaatgcaaaaaattaactgggcgtggtggcacatgcctgtaatc---acagc------------tactcagga----ggctgaggcacac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466263 97 +  48394510 aaaccctgtctctactaaaa---tataaaaataacttggacgtgtgggacatgcctgt-atc---acagctannnnnnnnnntactcggga----ggctgaggcacaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002678 82 +  32716333 aaactttgtctctactgaaaatacaaaaaattaactgggcgtggtggcacatgcctgtaatc---acagg-------------------ga----ggctgaggcacaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166252 89 - 198365852 aaaccctgtctctactaaatatacgaaaaattaactgggcctggtggcacatgcctgtaatt---acagc------------tacttggga----ggctgaggcacaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179005349 89 - 192294377 aaaccctgtctctactaaatatacgaaaaattaactgggcctggtggcacatgcctgtaatt---acagc------------tacttggga----ggctgaggcacaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389596 89 - 180432695 aaaccctgactctactaaatatacaaaaaattaactgggcctggtggcacatgcctgtaatt---acagc------------tacttggga----ggctgaggcacaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31662386 89 -  90373283 aaaccctgtctctactaaatatacgaaaaattaactgggcctggtggcacatgcctgtaatt---acagc------------tacttggga----ggctgaggcacaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469726 73 +  50472720 aaaccctgtctctactaaaaataca----------------tgatgacacaggcctgtaatc---atagc------------tactcagga----ggctgaggcacaa
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91587383 91 +  98207768 AAGTTTTTAATCTACTATAGTTAGGAAAAACTA------CATTTCAAGAAGTACCTATTAACAAGACAGC-----------ATACCTGAGATCCTGGCTCAAAAACAA
i mm10.chr16                I 239 I 58
s canFam3.chr31              28075937 35 +  39895921 acacttctgcttcact--------gagaaatca---------------atgtccctct--------------------------------------------------
i canFam3.chr31             C 0 C 0

a score=71306.000000
s hg38.chr21_GL383581v2_alt     63941 26 +    116689 gaattgcttgaacctggaaggcagag
s panTro4.chr21              19568067 26 +  32799110 gaattgcttgaacctggaaggcagag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466360 26 +  48394510 gaattgcttgaacctggaaggcagag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002760 26 +  32716333 gaattgcttgaacctggaaggcagag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166341 25 - 198365852 gaattgcttgaacctggaagg-agag
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179005438 25 - 192294377 gaattgcttgaacctggaagg-agag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389685 25 - 180432695 gaattgcttgaacctggaagg-agaG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31662475 25 -  90373283 gaattgcttgaacctggaagg-agag
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469799 26 +  50472720 gacttgcttgaacctggaaggcagag
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28075972  6 +  39895921 ------------cctgga--------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91587474 58 +  98207768 I

a score=112403.000000
s hg38.chr21_GL383581v2_alt     63967 38 +    116689 attgcagtg----caagattatgccactgcactccagcctgg
s panTro4.chr21              19568093 38 +  32799110 attgcagtg----caagattatgccactgaactccagcctgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466386 38 +  48394510 attgcagtg----caagatcatgccattgcactccagcctgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002786 38 +  32716333 attgcggtg----caagatcatgacactgcactccagcctgg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166366 38 - 198365852 attgcagtg----caagatcatgccactgcactccagcctgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179005463 38 - 192294377 attgcagtg----caagatcatgccactgcactccagcctgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389710 38 - 180432695 ATTGCAgtg----caagatcatgccactgaactccagcctgg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31662500 38 -  90373283 attgcagtg----caagatcatgccactgcactccagcctgg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469825 41 +  50472720 actgcagtg-agccaagatcatgccactgcactccaacctgg
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91587532 38 +  98207768 ATTGCAATGTATTTAGGACTCTG--ATTGGACACCGG--TAG
i mm10.chr16                I 58 C 0
s canFam3.chr31              28075978 12 +  39895921 ------------------------------actcaggcttgg
i canFam3.chr31             C 0 C 0

a score=373869.000000
s hg38.chr21_GL383581v2_alt     64005 123 +    116689 gcaacagagca---------agactctgtc-caaaaataaata--aataaat-gaaataaaTTAAACATA-----TCTAAAATATttgacacttcttccattgagag-------gtagattta-----------------------------tgtcctacctttgaatttgggtcaa
s panTro4.chr21              19568131 123 +  32799110 gcaacagaaca---------agactctgtc-caaaaataaata--aataaat-gaaataaaTTAAACATA-----TCTAAAATATttgacacttcttccattgagag-------gtagattta-----------------------------tgtcctacctttgaatttgggtcaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466424 123 +  48394510 gcaacagagca---------agactctgtc-caaaaataaata--aataaat-gaaataaaTTaaacatg-----tctaaaatatttgacacttcttccattgagag-------gtagattta-----------------------------tgtcctacctttgaatttgggtcaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002824 118 +  32716333 gcaacagagca---------agactctgtc-caaaaataaata--aataaat-gaaa-----taaaCatg-----tctaaaatatttgacacttcttccattgagag-------gtagattta-----------------------------tgtcctacctttgaatttgggtcaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166404 124 - 198365852 gcaacagagca---------agactctgtcacaaaaataaata--aataaat-gaaataaaTTAAACATG-----TCCAAAATATttgacacttcttccattgagag-------gtggattta-----------------------------tgtcctacctttgaatttgggtcaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179005501 124 - 192294377 gcaacagagca---------agactctgtcacaaaaataaata--aataaat-gaaataaattaaacatg-----tccaaaatatttgacacttcttccattgagag-------gtggattta-----------------------------tgtcctacctttgaatttgggtcaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389748 124 - 180432695 gcaacagagca---------agactctgtcacaaaaataaata--aataaat-gaaataaattaaacatg-----TCCAAAATATTTGACACTTCTTCCATTGAGAG-------GTGGATTTA-----------------------------TGTCCTACCTCTGAATTTGGGTCAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31662538 124 -  90373283 gcaacagagca---------agactctgtcacaaaaataaata--aataaat-gaaataaattaaacatg-----ttcaaaatatttgacacttcttccattgagag-------gtggattta-----------------------------tgtcctacctttgaatttgggtcaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469866 119 +  50472720 gaaacagagca---------agactctgtcacaaaaaTAAGTA--AATAAAT-GAAA-----TAAACATG-----TCTAAAATATttgatgctgattccattgagag-------gtagattta-----------------------------tgtcatacccttgaatttgggtcaa
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91587570 177 +  98207768 AGAACAGGGAAGAAGGGAGGAGAGCTTGCTTTGATCATCAGTACCACAAAATGGAAACaaaataaagaggctagctgtaaagtctctgacatcccttccattcaggggagaactgtgaatttgagtagtctagtcaggactatactacaatctttcccacctctggaatctgataaa
i mm10.chr16                C 0 C 0
e canFam3.chr31              28075990   0 +  39895921 C

a score=841728.000000
s hg38.chr21_GL383581v2_alt     64128 230 +    116689 caataaagactagttgaccagtagagtagaggaagtgatgctatgtaacttct-ccat---gccacttccaagatcaggtcacagaaggcaatggagcatctgcctggttctctggaacactaatgcttg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgacccacagttacagttgaggtcccagctaacagctagtattaactgccagac--atgagtaaagaca
s panTro4.chr21              19568254 231 +  32799110 caataaagactagttgaccagtagagtagaggaagtgatgctatgtaacttctgccat---gccacttccaagatcaggtcacagaaggcaatggagcatctgcctggttctctggaacactaatgctcg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgacccacagttacagttgaggtcccagctaacagctagtattaactgccagac--atgagtaaagaca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466547 233 +  48394510 caataaagactagttgaccagtagagtagaggaagtgatgctatgtaacttctgccat---gccacttccaagatcaggtcacagaaggcaatggagcatctgcctggttctctggaacactaatgctcg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgacccacagttccagctgaggtcccagctaacagctagtattaactgccagacatatgagtaaagaca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20002942 233 +  32716333 caataaagactagttgaccagcagagtagaggaagtgatgctatgtaacttctgccat---gccacttccaagatcaggacacagaaggcaatgaagcatctgcttggttctctggaacactaatgcttg------------------------------ggctactatgctgtaaggagaccatttataggtgttctgacccacagttccagttgaggtcccagctaacagctagtattaactgccagacatatgagtaaagaca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166528 233 - 198365852 caataaagactagttgaccagtagagtagaggaagtgatgctaagtaacttctgccat---gcaacttccaagatcaggtcacagaaggcaacggaccatctgcctggttctctggaacactaatgcttg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgacccacagttccagttgaggtcccagctaatagctagtactaacTgccagacatgtgagtaaagaca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179005625 233 - 192294377 caataaagactagctgaccagtagagtagaggaagtgatgctaagtaacttctgccat---gcaacttccaagatcaggtcacagaaggcaacggaccatctgcctggttctctggaacactaatgctcg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgacccacagttccagttgaggtcccagctaatagctagtactaacTgccagacatgtgagtaaagaca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167389872 233 - 180432695 CAATAAAGACTAGTTGACCAGTAGAGTAGAGGAAGTGATGCTAAGTAACTTCTGCCAT---GCAACTTCCAAGATCAGGTCACAGAAGGCAACGGACCATCTGCCTGGTTCTCTGGAACACTAATGCTCG------------------------------GGCTACCATGCTGTAAGGAGACCATTTATAGGTGTTCTGACCCACAGTTCCAGTTGAGGTCCCAGCTAATAGCTAGTACTAACTGCCAGACATGTGAGTAAAgaca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31662662 233 -  90373283 caataaagactagttgaccagtagagtagaggaagtgatgctaagtaacttctgccat---gcaacttccaagatcaggtcacagaaggcaacggaccatctgcctggttctctagaacactaatgctcg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgacccacagttccagttgaggtcccagctaatagctagtactaacTgccagacatgtgagtaaagaca
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37469985 228 +  50472720 caataaagactagctgac-----aagtagaggaagtgatactatgtaacttctgccat---gcaacttccaagatcaggtcacagaaggcaatgaagcatctgcctgggtctctggaacactaatgcttg------------------------------ggctaccatgctgtaaggagaccatttataggtgttctgtcccatagttccagttgaggttccagccaacagctagcattaattgccagacatatgagtaaagaca
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91587747 210 +  98207768 ata-aaggattggtcggcca---aactggaggaagga-------------ccgaccattggatgacttctaagattcagcctcaggaagcactgcagcttccacctgcttctgtag-acactaacgcctgtgtcccctgcttc-------------ccaaagccaccatgctgtgaggaaa--------------------ccacagttgtagctga-gtccccgccaacagcc----tccagggccagatgtgtgagtaaagatg
i mm10.chr16                C 0 C 0
s canFam3.chr31              28075990 250 +  39895921 caatcaaaactggctgaccagtagagtagaggaagtgattctatgtaatgtctgccat---acagcttctatgactagatagtaaaaggcaacacagcttatagctcgttctctagaacactagtaccagacttctgagttgccatgtaaaaaaatctaaggtcagaatgccgtgaggagaccatgtacaggtgttctggcccacggt-----------tcccagccaacaggtagcaccacctgccagatgtgtgagcagcca--
i canFam3.chr31             C 0 C 0

a score=3600.000000
s hg38.chr21_GL383581v2_alt     64358 1 +    116689 c
s panTro4.chr21              19568485 1 +  32799110 c
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466780 1 +  48394510 c
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20003175 1 +  32716333 c
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185166761 1 - 198365852 c
i rheMac3.chr3              C 0 I 1
s chlSab2.chr2               31662895 1 -  90373283 c
i chlSab2.chr2              C 0 I 563
s calJac3.chr21              37470213 1 +  50472720 c
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91587957 1 +  98207768 c
i mm10.chr16                C 0 C 0
s canFam3.chr31              28076240 1 +  39895921 c
i canFam3.chr31             C 0 C 0
e papAnu2.chr3              167390105 0 - 180432695 C
e macFas5.chr3              179005858 0 - 192294377 C

a score=280860.000000
s hg38.chr21_GL383581v2_alt     64359 258 +    116689 ttttaggtaactgct-atccagctatagcacca------tcccaaaagtttgagccttcccaggtaaggcaccagatatatggagcagagatacatcatcctggctatgccccttccaaattcctgacccataaaatctaataaacataataaaatgactgttttaagccacagggttttggcattaatctgtaacgca--------------gtaagacataactggaaGAAGGAGAAAAATCATATGCCTAAATAACTA-TAGGAGTGTAGCATACTA
s panTro4.chr21              19568486 258 +  32799110 ttttaggtaactgct-atccagctatagcacca------tcccaaaagtatgagccttcccaggtaaggcaccagatatatggagcagagatacatcatcctggctatgccccttccaaattcctgacccacaaaatctaataaacataataaaatgactgttttaagccacagggttttggcattaatctgtaacgca--------------gtaagacataactggaaGAAGGAGAAAAATCATGTGCCTAAATAACTA-TAGGAGTGTAGCATACTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34466781 255 +  48394510 ttgtaggtaactgct-atccagctatagcacca------tcccaaaagtttgagccttcccaggtaaggcaccagatatacggagcagagatacatcatcctggctatgccccttccaaattcctgacccataaaatctaataaacatattgaaatgaccgttttaagctacagtgttttggcattaatctgtaacgca--------------gtaagacataactggaaGAAGGAGAAAAATCATGTGCCTAAATAAC----AGGAGTGTAGCATACTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20003176 258 +  32716333 ttttaggtaactgct-atccagctatagcacca------tcccaaaagtttgagccttcccaggtaaggcaccagatacatggagcagagatacatcatcctggctatgccccttccaaattcctgacccataaaatctaataaacataataaaatgaccgttttaagccacagggttttggcattaatctgtaacgca--------------gtaagatataactggaaGAGGGAGAAAAATCATGTGCCTAAATAACTA-CAGGAGTGTAGCATACTA
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37470214 256 +  50472720 ttttaggtgactgct-atccagctatagcatct------cccccaaagtttgagccttcccaggtaaggcatcagatataaagaacaaagatacatcatcctggctgtgccccttccaaattcctgacccataaaatctaataaacataataaaatgactgttttaagcca-----------cATGTATCTGTAATACATAGATTCATGTAATGTAATACATAACT---AGAAAGAGAAAAATTATGTGCCTAAATAACT---ATGAGTGTAACATACTA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91587958 223 +  98207768 ----------------ttgcaggtgtagcctcg-------ccctatgctctgagccttcccagggaaggtgccagacagatggggcagagaaacagggtcttggctgggcccttgccaaagtttttacccacagaacctattaggtaaaacaaaagg--catttgtagcctctaggttttgaggttaatctata--gca---------------------acagct---------aGAGAAACAGTGGGGAAGAAGAACTGTTAAGAATGTAGTATACTA
i mm10.chr16                C 0 I 7392
s canFam3.chr31              28076241 259 +  39895921 ttctaggtgactgctcttccagctattgcaccagtccagtacccagacttccagctttacccaatgaagccccagatatatggagcagagacac--catcctggccatgcccttggccaattactgacccacagtaaaccataagcataacaaaatcgttgttttaaacgactaagtttcagagtt-atcaggaacaca--------------gcaatcaataact---agCAGGAGAAAAATCATGTGCATAAAGAACTA-TAAGGGTATAATATGCTG
i canFam3.chr31             C 0 I 9
e rheMac3.chr3              185166762   1 - 198365852 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C

a score=11615.000000
s hg38.chr21_GL383581v2_alt     64617 12 +    116689 TTTTTAAAA-ACA
s panTro4.chr21              19568744 12 +  32799110 TTTTTAAAA-ACA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34467036 12 +  48394510 TTTTTAAAA-ACA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20003434 12 +  32716333 TTTTTAAAA-ACA
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37470470 13 +  50472720 TTTTAAAAACACA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28076509 12 +  39895921 TTTTTAAGT-ACA
i canFam3.chr31             I 9 I 4122
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762  1 - 198365852 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105  0 - 180432695 C
e macFas5.chr3              179005858  0 - 192294377 C

a score=1133973.000000
s hg38.chr21_GL383581v2_alt     64629 1531 +    116689  
s panTro4.chr21              19568756 1529 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34467048 1545 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20003446 1555 +  32716333  
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37470483 1567 +  50472720  
i calJac3.chr21             C 0 I 5817
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762    1 - 198365852 I
e chlSab2.chr2               31662896  563 -  90373283 I
e papAnu2.chr3              167390105    0 - 180432695 C
e macFas5.chr3              179005858    0 - 192294377 C

a score=248140.000000
s hg38.chr21_GL383581v2_alt     66160 589 +    116689  
s panTro4.chr21              19570285 590 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34468593 584 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20005001 512 +  32716333  
i nomLeu3.chr25             C 0 I 53
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C

a score=5768.000000
s hg38.chr21_GL383581v2_alt     66749 21 +    116689 cacgaggtcaagagatcgaga
s panTro4.chr21              19570875 21 +  32799110 cacgaggtcaagagatcgaga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34469177 21 +  48394510 catgaggtcaagagatcgaga
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762  1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105  0 - 180432695 C
e macFas5.chr3              179005858  0 - 192294377 C
e nomLeu3.chr25              20005513 53 +  32716333 I

a score=86555.000000
s hg38.chr21_GL383581v2_alt     66770 217 +    116689 ccatcctggccaacatggtgaaaccccgtctccactaaaaatacaaaaacttagctgggcatggtagcaggcacctgtaatcctagctactcaggaggctaaggcagtagaattgcctgaacccaggaggcggaggttgcagtgagccgagattgcaccactgcactccagtcaggcaacagagcaagattccatctaaaaaataaataaataaata-
s panTro4.chr21              19570896 216 +  32799110 ctatcctggccaacatggtgaaaccccgtctccactaaaaatacaaaaatttagctgggcatggtagcaggcacctgtaatcctagctactcaggaggctaaggcagtggaattgcctgaacccaggaggcggaggttgcagtgagccgagattgcaccactgcactccagtcaggcaacagagcaagattccatctaaaaa-taaataaataaata-
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34469198 214 +  48394510 ccatcctggccaacatggtgaaaccctgtctccactaaaaatacaaaaacttagctgggcatggtggcgggcacctgtaatcctagctaatcaagaggataaggcagtagaattgcctgaacccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagtcaggcaacacagcaagattccatctaaaaa---aataaataaata-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20005566 215 +  32716333 ccagcctgggtgaaagagcgagactccgtctcaaaaaaaaaaaaaaaaaattatccgggcatggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaacagcgagaagccgggagacagagcttgcagtgagccgagttcacgccactgcactccagcctgg-gagacagagagactcc-tctaaaaa-aaaaaaaagaaagaa
i nomLeu3.chr25             I 53 I 345
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C

a score=1072287.000000
s hg38.chr21_GL383581v2_alt     66987 2087 +    116689  
s panTro4.chr21              19571112 2081 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34469412 2055 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20006126 2087 +  32716333  
i nomLeu3.chr25             I 345 I 303
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762    1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896  563 -  90373283 I
e papAnu2.chr3              167390105    0 - 180432695 C
e macFas5.chr3              179005858    0 - 192294377 C

a score=204329.000000
s hg38.chr21_GL383581v2_alt     69074 419 +    116689 caagaaaaactgaagaggccaggtgcaatggctaacacttgtaatcccagcactttgggaggccaaggtgggtggattacctgaggtcaggagttcgacaccagcc---------tggtgaaaccctgtctctactaaaaatacaaaacca--agctgggcgtggtggtggatgcctgtaatcccacctattcaggaggctgaggcaggagaatcacttggacccgggaggcagaggttgcagtgagccaagatcgtgccattgcactccagcctgggcaacaggagtgaaactccgtcaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagacaacaatttaaagcaaaaatTAGAACACTGTAGAGAATGTCCAAAaagataaatttctttctaaacagtatgtcagttatgttttcaaataatatcat
s panTro4.chr21              19573193 405 +  32799110 caagaaaaactgaagaggccaggtgcaatggctaacacttgtaatcccagcactttgggaggccaaggtgggtggattacctgaggtcaggagttcaaaaccagcc---------tggtgaaaccctgtctctactaaaaatacaaaacca--agctgggcgtggtggtggatgcctgtaatcccacctattcaggaggctgaggcaggagaatcacttggacccgggaggcagaggttgcagtgagccaagatcgtgccattgcactccagcctgggcaacaggagcgaaactccgtcaccaaaaaaaaaaaaaa--------------gacaacaatttaaagcaaaaatTAGAACACTGTAGAGAATGTCCACAaagataaatttctttctaaacagtatgtcagttatgttttcaaataatatcat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34471467 422 +  48394510 caagaaaaactgaagaggccaggtgccatggctaacacttgtaatcccagcactttgggaggccaaggtgggtggattacctgaggtcaggagtttgagaccagcctagccaacatgatgaaaccctgtctctaataaaaatacaaaaaaattagccaggcgtggtagtgggcgcttgtaatcccagctacttgggaggctgagccaggagaatcacttggacccggcagacggaggttgcagtgagccaagatcgtgccattgcactccagcctgggcaacaggagcaaaactccgtcaccaaaaaaaaaaaaaa--------aagaaagacaacaatttaaagcaaaaatTAGAATACTGTACAGAATGTCCACAAAGATAAATTTCTTTCTAAACAGTATGTCAGTTATGTTTTCAAATAATATCAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20008516 413 +  32716333 CAAGAAAAACTGAAGAggccaggtgcgatggctaacacttgtaatcccagcactttgggaagccaaggtgggtggattacctgaggtcaggagtttgagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagccaggcgtggtagtgggcacttgtaatcccagctactcgggaggctgaggcaggagaatcacttggacccgggaggcggaggttgcagtgagtcaagattgtgccattgcactccagcctgggcaacaggagcaaaactctgtcaccaaaaaaaaaaaaaa-----------------GACAATTTAAAGCAAAAATTAGAACACTGTAGAGAATGTCCACAaagataaatttctttctaaacagtatgtcagctatgttttcaaataataCCAT
i nomLeu3.chr25             I 303 I 4003
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C

a score=163196.000000
s hg38.chr21_GL383581v2_alt     69493 603 +    116689  
s panTro4.chr21              19573598 603 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34471889 604 +  48394510  
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28076521 4122 +  39895921 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=184888.000000
s hg38.chr21_GL383581v2_alt     70096 496 +    116689  
s panTro4.chr21              19574201 496 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34472493 495 +  48394510  
i ponAbe2.chr21             C 0 C 0
s canFam3.chr31              28080643 508 +  39895921  
i canFam3.chr31             I 4122 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=49213.000000
s hg38.chr21_GL383581v2_alt     70592 181 +    116689 CAAGTATGggccgggcacggtggctcatgcctgtaatcccagtactttggggggctgagatgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtaaaatcctgtctctactaaaaatacaaaaatcagccaggcgtggtggcagacacctgtaatcccagctactt
s panTro4.chr21              19574697 181 +  32799110 CAAGTATGggccgggcacagtggctcatgcctgtaatcccagtactttggggggctgaggtgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtaaaatcctgtctctactaaaaatacaaaaatcagccaggcgtggtggcagatgcctgtaatcccagctactt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34472988 181 +  48394510 CAAGTATGggccaggcacggtggctcatgcctgtaatcccagcactttggggggccgaagtgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtaaaatcctgtctctactaaaaatacaaaaatcagccaggcgtggtggcaggcgcctgtaaccccagctactt
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28081151   0 +  39895921 C
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=3906.000000
s hg38.chr21_GL383581v2_alt     70773 8 +    116689 gggaggct
s panTro4.chr21              19574878 8 +  32799110 gggaggct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473169 8 +  48394510 gggaggct
i ponAbe2.chr21             C 0 C 0
s canFam3.chr31              28081151 8 +  39895921 GGAAGGTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762 1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105 0 - 180432695 C
e macFas5.chr3              179005858 0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=31936.000000
s hg38.chr21_GL383581v2_alt     70781 120 +    116689 gaggcaggagaatcacttgaacccaggcagcagaggttgcaatgaaccaagatcacaccactgcactccagcctgggtgacagagtgagactccgtctccaaaaaaaaaaaa---GCATGGGG
s panTro4.chr21              19574886 123 +  32799110 gaggcaggagaatcacttgaacccaggcagcagaggttgcaatgaaccaagatcacaccactgcactccagcctgggtgacagagtgagactccgtctccaaaaaaaaaaaaaaaGCATGGGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473177 120 +  48394510 gaggcaggagaatcgcttgaacccaggcagcagaggttgcaacgaaccaagatcgcaccactgcactccagcctgggtgatagagtgagactccgtctccaaaaaaaaaaaa---GTATAGGG
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28081159   0 +  39895921 C
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=14154.000000
s hg38.chr21_GL383581v2_alt     70901 33 +    116689 AAAGTCACCATGAATTTAAGGCAATGCTTGAAG
s panTro4.chr21              19575009 33 +  32799110 AAAGTCACCATGAATTTAAGGCAACGCTTTAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473297 33 +  48394510 AAAGTCAGCATGAATTTAAGGCAATGCTTGAAG
i ponAbe2.chr21             C 0 I 5577
s canFam3.chr31              28081159 33 +  39895921 AAATTCACTATGAATTTAAGACAATTTCTGAAG
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762  1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105  0 - 180432695 C
e macFas5.chr3              179005858  0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=455.000000
s hg38.chr21_GL383581v2_alt     70934 3 +    116689 ATT
s panTro4.chr21              19575042 3 +  32799110 GTT
i panTro4.chr21             C 0 C 0
s canFam3.chr31              28081192 2 +  39895921 -TT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e ponAbe2.chr21              34473330 5577 +  48394510 I
e rheMac3.chr3              185166762 1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105 0 - 180432695 C
e macFas5.chr3              179005858 0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=89315.000000
s hg38.chr21_GL383581v2_alt     70937 230 +    116689 AAAAAAAATTCATTTCCCA-CATAAAATTCATTTCCCATATATTAATCT-ATTATAAATTATTATATAAGCAGAAATGAGGTAGGTATTTCCACACACAGATTTATAAAACAAGTCATAATCTCCTCCCAACTAGGGCTTAAATT---GGGTCAGAGATGGGGTGGGACAAAGGAACAGGAAAACAAATTTATACAAATAATGACTATGAAGGAAATGCATAGGATCCTAAGAGA--
s panTro4.chr21              19575045 230 +  32799110 AAAAAAAATTCATTTCCCA-CATAAAATTCATTTCCCatatattaatct-attataaattattatataaGCAGAAAAGAGGTAGGTATTTCCACACACAGATTTATAAAACAAGTCATAATCTCCTCCCAACTAGGGCTTAAATT---GGGTCAGAGATGGGGTGGGACAAAGGAACACGAAAACAAATTTATACAAATAATGACTATGAAGGAAATGCATAGGATCCTAAGAGA--
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34478907 230 +  48394510 AAAAAAAATTCACTTCCCA-TATAAAATTCATTTCCCATATATTAATCT-ATTATAAATTGTTATATAAGCAGAAAAGAGGTAGGTATTTCCACACACAGATTTATGGAACAAGTCATAATCTCCTCCCAACTAGGGCTTAAGTT---GGGTCAGAGATGGAGTGGGACAAAGGAACAGCAAAACAAATTTATACAAATAATGACTATGAAGGAAATGCATAGGATCATAAGAGA--
i ponAbe2.chr21             I 5577 T 5309
s canFam3.chr31              28081194 232 +  39895921 --AAAAGTCTTATTTTCTATTTTAAAATTCATTTCCCATACATTAACCCAATTAAAAGTAGTTCTAGAAGCAGAAAATATACAGCTATTTGCAAACAGTGATTTCTCAA--AGGTCATGATTTCCTCCCTTCTGGGGCTTAAATTGGAGGGTCAGGGATGGAGTGCCGCAGAGACACATC-AAACAGAGTAATACAAATAATGACTATGGAGGAAATGTGCAGGATCCTAACAGCGA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=11765.000000
s hg38.chr21_GL383581v2_alt     71167 30 +    116689 ATAAAGGGGAAGCTTatttcagaatgagtg
s panTro4.chr21              19575275 30 +  32799110 ATAAAGGGGAAGCTTatttcagaatgagtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473828 28 +  48394510 ATAAAGGGGAAGCTTATTT-AGAATGAGT-
i ponAbe2.chr21             T 5309 C 0
s canFam3.chr31              28081426 30 +  39895921 ATAAAGGGGAGACTTATTTTAGAAAGGGTG
i canFam3.chr31             C 0 I 1328
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762  1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105  0 - 180432695 C
e macFas5.chr3              179005858  0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=1146.000000
s hg38.chr21_GL383581v2_alt     71197 4 +    116689 gtca
s panTro4.chr21              19575305 4 +  32799110 gtca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473856 4 +  48394510 GTCA
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28081456 1328 +  39895921 I
e rheMac3.chr3              185166762 1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105 0 - 180432695 C
e macFas5.chr3              179005858 0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=44513.000000
s hg38.chr21_GL383581v2_alt     71201 105 +    116689 gggaaagcctctttgaagaggtaaagtttgCTAAAATTAAAAAAAA-CCTACTGAAATTTAAAAGCTGAGTAAAGTTAATTAGATTAAATAGAAGTAAAAGGAGTA
s panTro4.chr21              19575309 106 +  32799110 gggaaagcctctttgaagaggtaaagtttgCTAAAATTAAAAAAAAACCTACTGAAATTTAAAAGCTGAGTAAAGTTAATTAGATTAAATAGAAGTAAAAGGAGTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473860 104 +  48394510 GGGAAAGCCTCTCTGAAGAGGTAAAG-TTGCTAAAATTAAAAAAAA-CCTACTGAAATTTAAAAGCTGAGTAAAGTTAATTAGATTAAATAGAAGTAAAAGGAGTA
i ponAbe2.chr21             C 0 C 0
s canFam3.chr31              28082784 103 +  39895921 GGGAAAGCCTCTATGATGAGGTAATACTTGGTAAAATCTTAAAA---CATACTAAAGTTTAAAAGCTGAGCAAAGTGAATTAGATTAAGAAGAAACAAAAggggca
i canFam3.chr31             I 1328 I 1952
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=125696.000000
s hg38.chr21_GL383581v2_alt     71306 467 +    116689 GAGCAGAGAGAGGGAAAAATATACACAAAGCCCCTAAATCCCTTAGTACCAGCAAGGAAGAATTAGCTGCTACCTAGGAGAATCAGGATAAAGAAAGAAAGTAAAGGTggcagggttcagtggctcatgtctgtaatcctagcactttgggaggccaaggtgggcagatcatttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccctggctctactaaaaatacaaaaattagccgggcatggtggcgggcacctgtaatcccagctactcaggagtcagatgcaggaaaatcacttgaacccaggaggtggaggttgcagtgagctgagatcacaccactgcattgcccaagctggTCCCTaacttctggccccaagtgattcttccatttcagcccccctagagtagctgggattacaggtgcaagccatggtgccctaaca--aatatgtttag
s panTro4.chr21              19575415 469 +  32799110 GAGCAGAGAGAGGGAAAAATATACACAAAGCCCCTAAATCCCTTAGTACCAGCAAGGAAGAATTAGCTGGTACCTAGGAGAATCAGGATAAAGAAAGAAAGTAAAGGGggcagggctcagtggctcatgtctgtaatcctagcactttgggaggccaaggtgggcagatcatttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccctggctctactaaaaatacaaaaattagccgggcatggtggcgggcgcctgtaatcccagctattcaggagtcagatgcaggaaaatcacttgaacccaggaggtggaggttgcagtgagctgagatcacaccattgcattgcccaagctggTCCCTaacttctggccccaagtgattctcccatttcagcccccctagagtagctgggattacaggtgcaagccatggtgcccTAACAGAAATATGTTTAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34473964 469 +  48394510 GAGCAGAGAGAGGGAAAAATATACACAAAGCCCCTAAATCCCTTAGTACCAGCAAGGAAGAATTAGCTGGTACCTAGGAGAATCAGGATAAAGTAAGAAAGTAAAGGGggcagggctcagtggctcatgtctgtaatcctagcactttgggaggccaaggggggcagatcatttgaggtcaggagttcgaggccagtctggccaacatggtaaaaccctgtctctactaaaaatacaaaaattaacagggcatggtggcgggagcctgtaatcccagctactcgggagtcagaggcaggagaatcgcttcaacccaggaggtggaggttgcagtgagccgagatcacaccactgcattgcccaagctggTCCCTaacttctggccccaagtgattctcccatttcagcccccctagagtagctggggttacagatgcaagccatggtgcccTAACAGAAATATGTTTAG
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28082887 1952 +  39895921 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=17958.000000
s hg38.chr21_GL383581v2_alt     71773 40 +    116689 aagagTTGTAGGACACTGTTTGCCAGAAAGAGTCAAGGAA
s panTro4.chr21              19575884 40 +  32799110 AAGAGTTATAGAACACTATTTGCCAGAAAGAGTCAAGGAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34474433 40 +  48394510 AAGAGTTATAGGACACTATTTGCCAGAAAGAGTCAAGGAA
i ponAbe2.chr21             C 0 C 0
s canFam3.chr31              28084839 40 +  39895921 AAGTGTTATAGGACAGTACTTGCCAGGAAGAACTGAGGAA
i canFam3.chr31             I 1952 I 8261
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185166762  1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105  0 - 180432695 C
e macFas5.chr3              179005858  0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=714691.000000
s hg38.chr21_GL383581v2_alt     71813 2748 +    116689  
s panTro4.chr21              19575924 2757 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34474473 2731 +  48394510  
i ponAbe2.chr21             C 0 I 5020
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28084879 8261 +  39895921 I
e rheMac3.chr3              185166762    1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896  563 -  90373283 I
e papAnu2.chr3              167390105    0 - 180432695 C
e macFas5.chr3              179005858    0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=40016.000000
s hg38.chr21_GL383581v2_alt     74561 143 +    116689 agatagaaaacagataagaaattagaagaccagggccaggcacagtggctcacgcctgtaatcccaggactttgggaggcccaggcaggcagatcacctgaggtcaggagttagagaccagcctgatcaacatagagaaactc
s panTro4.chr21              19578681 143 +  32799110 agatagaaaacagataagaaattagaagaccagggccaggcacagtggctcacgcctgtaatcccaggactttgggaggcccaggcaggcagatcacctgaggtcaggagttagagaccagcctgatcaacatagagaaactc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34482224 143 +  48394510 agatagaaaacagataagaaattagaagaccagggccaggcacggtggctcacgcctgtaatcccaggactttgggaggcccaggcaggcagatcacctgagatcaggagttagagaccagcctgaccaacatggagaaactc
i ponAbe2.chr21             I 5020 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28084879 8261 +  39895921 I
e rheMac3.chr3              185166762   1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e papAnu2.chr3              167390105   0 - 180432695 C
e macFas5.chr3              179005858   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=1205.000000
s hg38.chr21_GL383581v2_alt     74704 2 +    116689 ca
s panTro4.chr21              19578824 2 +  32799110 ca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34482367 2 +  48394510 cg
i ponAbe2.chr21             C 0 C 0
s macFas5.chr3              179005858 2 - 192294377 cg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167390105 2 - 180432695 cg
i papAnu2.chr3              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28084879 8261 +  39895921 I
e rheMac3.chr3              185166762 1 - 198365852 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=329452.000000
s hg38.chr21_GL383581v2_alt     74706 264 +    116689 tctctactaaaaatacaaagttagccgtgagtggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatctcaccactgcactccaccctgggcgatacagcgagactctgtctccaagaaaagaaagaaagaagttaaaagaccagtataaaagattcacatataaata--acaggtatttcagaaaggaactacacaggaaatagaagag
s panTro4.chr21              19578826 260 +  32799110 tctctactaaaaatacaaaattagccctgagtggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatctcaccactgcactccaccctgggcgatacagcgagactctgtctccaaaaaaagaaagaa----gttaaaagaccagtataaaagattcacatataaata--acaggtatttcagaaaggaactacacaggaaatagaagag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34482369 264 +  48394510 tctctactaaaaatacaaaattagccatgagtggtggcacatgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatctcgccactgcactccaccctgggcgacagagcgagactctgtctccaaaaaaagaaagaaagaagttagaagaccagtataaaagattcacatataaata--acaggtatttcagaaagaaactacacaggaaatagaagag
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185166763 259 - 198365852 tctctactaaaaatacaaaattagctgtgagtggtggcgcatgcctataatcccagttacttgggaggctgaggcaggagaatcacttggacccaggaggcggaggttgcaatgagctgagatctcgccactgcactccaccctgggtgatagagcgagactctgtctccaaaaaaagaaaaga---aGttagaagaccagtaaaaaagattcacatataaataacacaggtattttaga----aactacacaggaaacagtagag
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              179005860 259 - 192294377 tctctactaaaaatacaaaattagctgtgagtggtggcgcatgcctataatcccagttatttgggaggctgaggcaggagaatcacttggacccaggaggcggaggttgcagtgagctgagatctcgccactgcactccaccctgggtgatagagcgagactctgtctccaaaaaaagaaaaga---aGttagaagaccagtaaaaaagattcacatataaataacacaggtattttaga----aactacacaggaaacagtagag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167390107 259 - 180432695 tctctactaaaaatacaaaattagccgtgagtggtggcgcatgcctataatcccagttacttgggaggctgaggcaggagaatcacttggacccaggaggcggaggttgcagtgagctgagatcttgccactgcactccaccctgggtgatagagcgagactctgtctccaaaaaaagaaaaga---agttagaagaccagtaaaaaagaTTCACATATAAATAACACAGGTATTTTAGA----AACTACacaggaaacagaagag
i papAnu2.chr3              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28084879 8261 +  39895921 I
e calJac3.chr21              37472050 5817 +  50472720 I
e chlSab2.chr2               31662896 563 -  90373283 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=1293062.000000
s hg38.chr21_GL383581v2_alt     74970 749 +    116689  
s panTro4.chr21              19579086 749 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34482633 758 +  48394510  
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185167022 768 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179006119 756 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167390366 754 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31663459 739 -  90373283  
i chlSab2.chr2              I 563 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28084879 8261 +  39895921 I
e calJac3.chr21              37472050 5817 +  50472720 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=268881.000000
s hg38.chr21_GL383581v2_alt     75719 139 +    116689 tggcgaaaccccgtctctattta---aacaacaacaaaaaaatattcagacacgcaaggtctccaaaaaa-gtaactcttcttctaaaaatgtaactcttcttgtcaagaagctactggagtttgagcttcaccagggagagt
s panTro4.chr21              19579835 139 +  32799110 tggcgaaaccccgtctctattta---aacaacaacaaaaaaatattcagacacgcaaggtctccaaaaaa-gtaactcttcttctaaaaatgtaactcttcttgtcaagaagctactggagtttgagcttcaccagggagagt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34483391 140 +  48394510 tggcaaaaccccgtctctactta---aacaacaacaaaaaaatattcagacacgcaaggtctccaaaaaatgtaactcttcttctaaaaatgtaactcttcttgtcaagaagctactggagtttgagcttcaccagggagagt
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185167790 123 - 198365852 aggcgaaatcccgtctctatttaaacaacaacaaCAACAAAatattcagacacacaaggtctccaaaaaa--------------------tgtaactattcttgtcaagaagctactggagtttgagcttcaacagggagagt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179006875 123 - 192294377 aggcgaaatcccgtctctatttaaacaacaacaaCAACAAAatattcagacacacaaggtctccaaaaaa--------------------tgtaactattcttgtcaagaagctactggagtttgagcttcaacagggagagt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167391120 120 - 180432695 aggcgaaatcccgtctctattta---aacaacaacaacaaaatattcagACACACAAGGTCTCCAAAAAA--------------------TGTAACTATTCTTGTCAAGAAGCTACTGGAGTTTGAGCTTCAACAGGGAGAGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31664198 120 -  90373283 aggcgaaatcccgtctctattta---aacaacaacaaCAAAatattcagacacgcaaggtctccaaaaaa--------------------tgtaactattcttgtcaagaagctactggagtttgagcttcaacagggagagt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37477867 116 +  50472720 tggCAAAACCCCGTCTCTATTTA---AACaacaa----aaaatattcagacacgcaagctttccaaaaaa--------------------tgtaactcttcttgtcaagaagctatggtcgtttgagcttcaccagggagagt
i calJac3.chr21             I 5817 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28084879 8261 +  39895921 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=1229944.000000
s hg38.chr21_GL383581v2_alt     75858 482 +    116689 aaattaataaaag-----agaatacaggatacaggaaagatcctgcacagaagagctaaaaagaatccagCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGAAGCAGT-GTAACTCAGGACATA-ATGTCCTGGCTGCTATAGCAGTTTTTT----------GTGGGGGATTTTGTGCCTTTATACAAAACAATCTTTT-AATAAATCCACTGGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAGGAACTTGGCCCAGA-GCCTATCTG---TACTCAGTGGGGCTTGGCTTGATCTTGAGCACATGCTGATGCAGTTCCTGCTCTCCTTGCAAGGCGTGCAGCCTTCGTCAGCAGAGGACACTCACTTCCCCCTCAGAGAGGTTCTGCTTTCACCTACCCTGTTAACTACAGGTAGGCCATGGTGAGCTAAGAAGCAG-------AAAATGCAGAGAAGCCCACTCCTTCTGACCTTATTTTTGTTGTCTTTCCAT
s panTro4.chr21              19579974 482 +  32799110 aaattaataaaag-----agaatacaggacacaggaaagatcctgcacagaagagctaaaaagaatccagCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGAAGCAGT-GTAACTCAGGAGATA-ATGTCCTGGCTGCTACAGCAGTTTTTT----------GTGGGGGATTTTGTGCCTTTATACAAAACAATCTTTT-AATAAATCCACTGGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAGGAACTTGGCCCAGA-GCCTATCTG---TACTCAGTGGGGCTTGGCTTGATCTTGAGCATATGCTGATGCAGTTCCTGCTCTCCTTGCAAGGCGTGCAGCCTTCGTCAGCAGAGGACACTCACTTCCCCCACAGAGAGGTTCTGCTTTCACCTACCCTGTTAACTACAGGTAGGCCATGGTGAGCTAAGAAGCAG-------AAAATGCAGAGGAGCCCACTCCTTCTGACCTTATTTTTGTTGTCTTTCCAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34483531 448 +  48394510 aaattaataaaag-----agaatacaggatacaggaaagatcctgcacagaagagctaaaaagaatccagCTGTGCCCCAGAAGCAGCAGGTAATCAGGCCAGGCTGAAGCAGT--------------------------------------TTTTTT----------GTGAGGGATTTTGTGCCTTTATACAAAACAATCTTTT-AATAAATCCACTGGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAGGAACTTGGCCCAGA-GCCTATCTGCTATACTCAGTGGGGCTTGGCTTGATCTTGAGCATATGCTGATGCAGTTCCTGCTCTCC-TGCAAGGCGTGCAGCCTTCGTCAGCAGAGGACACTCACTTCCCCCACAGAGAGGTTCTGCTTTCACCTACCCTGTTAACTACAGGTAGGCCATGGTGAGCTAAGAAGCAG-------AAAATGCAGAGGAGCCCACTCCTTCTGACCTTATTTTTGTTGTCTTTCCAT
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185167913 480 - 198365852 gaattaataaaag-----agaatatgggatacaggaaagatcctgcacagaagaactaaagagaatccAGCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGCAGCAGT-GTAACTCAGGAGATA-ACGTCCTGGCTGGTATAGCAGTTTTTT----------GT-GGGGATTTTGTGCCTTTATAAAAAACAATCTTTT-AAAAAATCCACTGGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAAGAACTTGGCCCAGA-GCCTATCTG---TACTCACTGGGGCTTGGCTTGATCCTGAGCATATGCTGATGCAGTTCCTGCTCTCC-TGCAAGGCGTGCAGCCTTCGTCAGCAGACGACACTCACTTCCCCCACAGAGAGGTTCTGCTTTCACCTACCCTGTTAACTACAGGTAGGCCATGGTGAGCTAAGAAGCAG-------AAAATGCAGAGAAGCCCACTCCTTCTGACCTTATTTTTGTTGTCTTTCCAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179006998 481 - 192294377 gaattaataaaag-----agaatatgggatacaggaaagatcctgcacagaagaactaaagagaatccagCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGCAGCAGT-GTAACTCAGGAGATA-ACGTCCTGGCTGGTATAGCAGTTTTTT----------GTGGGGGATTTTGTGCCTTTATAAAAAACAATCTTTT-AAAAAATCCACTGGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAAGAACTTGGCCCAGA-GCCTATCTG---TACTCACTGGGGCTTGGCTTGATCCTGAGCATATGCTGATGCAGTTCCTGCTCTCC-TGCAAGGCGTGCAGCCTTCATCAGCAGACGACACTCACTTCCCCCACAGAGAGGTTCTGCTTTCACCTACCCTGTTAACTACAGGTAGGCCATGGTGAGCTAAGAAGCAG-------AAAATGCAGAGAAGCCCACTCCTTCTGACCTTATTTTTGTTGTCTTTCCAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167391240 482 - 180432695 GAATTAATAAAAG-----AGAATATGGGATACAGGAAAGATCCTGCACAGAAGAACTAAAGAGAATCCAGCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGCAGCAGT-GTAACTCAGGAGATA-ACGTCCTGGCTGGTATAGCAGTTTTTT----------GTGGGGGATTTTGTGCCTTTAtaaaaaacaatcttttaaaaaaatccactgGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAAGAACTTGGCCCAGA-GCCTATCTG---TACTCACGGGGGCTTGGCTTGATCCTGAGCATATGCTGATGCAGTTCCTGCTCTCC-TGCAAGGCGTGCAGCCTTCGTCAGCAGACGACACTCACTTCCCCCACAGAGAGGTTCTGCTTTCACCTACCCTGTTAACTACAGGTAGGCCATGGTGAGCTAAGAagcag-------aaaatgcagagaagccCACTCCTTCTGAccttatttttgttgtctttccaT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31664318 481 -  90373283 gaattaataaaag-----agaatatgggatacaggaaagatcctgcacagaagagctaaagagaatccagCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGCAGCAGT-GTAACTCAGGAGATA-ACGTCTTGGCTGGTAGAGCAGTTTTTT----------GTGGGGGATTTTGTGCCTTTATAAAAAACAATCTTTT-AAAAAATCCAGTGGAATATAGCAGCTTTTGAAGCTGAGGACTGAATGCTCCAAGAACTTGGCCCAGA-GCCTATCTG---TACTCACTGGGGCTTGGCTTGATCCTGAACATATGCTGATGCAGTTCCTGCTCTCC-TGCAAGGCGTGCAGCCTTCTTCAGCAGACTACACTCACTTCCCCCAGAGAGAGGTTCTGCTTTCACCTACTCTGGTAACTACAGGTAGGCCATGGTGAGCTAAGAAGCAG-------AAAATGCAGAGGAACCCACTCCTTCTGACCTTATTTTTGTTGTCTTTCCAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37477983 466 +  50472720 gaaataatgaaag-----agaatacaggatgcag----gaTCTT---------AGCTAAAGAGAATCCAGCTGTGCCCCAGAAGCAGCAGATAATCAGGCCAGACTGAAGCAGT-GTAACTCAGGAGATA-ATGTCCTAGCTGCTATAGCAGTTTTTTTTGTGGGGCGGTGGGGGG--TTGTGCCTTTACAAAAAACAACTTTTT-CAGAAATCCATTGATATACAGCAGCTTTTTAACCTGAGGACTGAATGCTCCAGGAACTTGGCCCAGA-GCCTATCTG---TACTCAGTGGGGCTTGGCTTGATCTTGAGCATATGCTGATGCAGTTCCTATTCTCC-TGCAAGGAGTACAGCCTTCGTCAGCAGAGGACACTCACTTCCCTCACAGAGAGGT----------CCTGCCCTGTTAACTACAGGTAGGCCACAGTGCGCTAAGAAGCAG-------AAAATGCAGAGAAGTCCACTCCTTCTTACCTTATATTTGTAGTCTTTCCAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28093140 420 +  39895921 aaataaaaaaaaatatataGAATCCAGGGTATAGGAAAGATCCAACACAGGAGAGCTAAAGAGAATCCAGCTGTGCCCCAGACAAGGAGGCTAACCAGGCCAGATTGAAGTAGTGGTAACTCGAGACAGACATGCCCCAGCTGCTCTACCAGCCTTTT------------------------------------------------------------------------------AACCTGAGGACTGAATGCCCC-GAAACCTGGCCCAGATTCCTATCTG---TACTCAGCTGGGCTTGGCTTGATCTTGATCATATGGTGATAAAGCTCCTGCTCGCCTTCCAAGCCCTGCAG-CTGCACCAGCAGAGGACATTCACTTCCTTCACAGAAGGGTTCTGCTTTGACTGACCCTGCTAGCTGCAGGCTGGTCAC-GTGAGCTAAAAAGCAGAAAATACAAAATGCGAAGCAGCCTACCC-------TCTCGTTTCTGCTGTCCGTCCAG
i canFam3.chr31             I 8261 I 470
e mm10.chr16                 91588181 7392 +  98207768 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=536284.000000
s hg38.chr21_GL383581v2_alt     76340 212 +    116689 TACTTGGTCCA--CTAGAACCTTCCAGATACC----CTGACTGAGGTGACTCCCCTTTCCTAGG----ACTCATAACACAGCCCACAAACTTCCTCAGAAAGGCCCCCTGTAAACGGGCAAGGGATCTGAAGCCATTCTGTTCAGCTCATCTTTTCCTAAAAACCTTCATCTA--AGTGGC-----TGTCCTTTCCTTA----GTGAAGTTTGACGTTATAATTATAAAATGA
s panTro4.chr21              19580456 212 +  32799110 TACTTGGTCCA--CTAGAACCTTCCAGATACC----CTGACTGAGGTGACTCCCCTTTCCTAGG----ACTCATAACACAGCCCACAAACTTCCTCAGAAAGGCCCCCTGTAAACAGGCAAGGGATGTGAAGCCATTCTGTTCAGCTCATCTTTTCCTAAAAACCTTCATCTA--AGTGGC-----TGTCCTTTCCTTA----GTGAAGTTTGATGTTATAATTATAAAATGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34483979 216 +  48394510 TATTTGGTCCA--CTAGAACCTTCCAGATACCCTGACTGACTGAGGTGACCCCCCTTTCCTAGG----ACTCATAACACAGCGCACAAACTTCCTCAGAAAGGCCCCCTGTAAACAGGCAAGGGATCTGAAGCCATTCTGTTCAGCTCATCTTTTCCTAAAAATCTTCATCTA--AGTGGC-----TGTCCTTTCCTTA----GTGAAGTTTGACCTTATAATTATAAAATGA
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185168393 212 - 198365852 TACGTGGTCCA--CTAGAACCTTCCAGATACC----CTGACTGAGGTGACCCCCTTTTCCTAGG----ACTCATAACACAGCACATAAACTTCCTCAGAAAGGCCCCCTGTAAACAGGCAAGGGATCTGAAGTCATTCTGTTCAGCTCATCTTTTCTTGAAAACCTTCATCTA--AGTGGC-----TATCCTTTCCTTA----GTCAAGTTTGACCTTATAATTATAAAATGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179007479 212 - 192294377 TACGTGGTCCA--CTAGAACCTTCCAGATACC----CTGACTGAGGTGACCCCCCTTTCCTAGG----ACTCATAACACAGCACATAAACTTCCTCAGAAAGGCCCCCTGTAAACAGGCAAGGGATCTGAAGTCATTCTGTTCAGCTCATCTTTTCTTGAAAACCTTCATCTA--AGTGGC-----TATCCTTTCCTTA----GTCAAGTTTGACCTTATAATTATAAAATGA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167391722 212 - 180432695 TACGTGGTCCA--CTAGAACCTTCCAGATACC----CTGACTGAGGTGACCCCCCTTTCCTAGG----ACTCATAACACAGCACATAAACTTCCTCAGAAAGGCCCCCTGTAAACAGGTAAGGGATCTGAAGTCATTCTGTTCAGCTCATCTTTACTTGAAAACCTTCATCTA--AGTGGC-----TATCCTTTCCTTA----GTCAAGTTTGACCTTATAATTACAAAacga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31664799 212 -  90373283 TACGTGGTCCA--CTAGAACCTTCCAGATACC----CTGACTGAGGTGACCCCCCTTTCCTAGG----ACTCATAACACAGCACATAAACTTCCTCAGAAAGGCCCCCTGTAAACAGGCAAGGGATCTGAAGTCATTCTGTTCAGCTCATCTTTTCTTGAAAACCTTCATCTA--AGTGGC-----TGTCCTTTCCTTA----GTCAAGTTTGACCTTATAATTATAAAATGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37478449 153 +  50472720 TACTTGGTCCA--CTAGAACCTTCCAGATACC----CTGATTGAGGGGATCCCCCTTTCCTAGG----ACTCATAACACAGCCCACAAACTTCCTCCAAAAGGCCCCCTGTAAACAAGCAAGGGAGCTGAAGCCATTCTGTTCAGC----------------------------------------------------------------------TTATAATTACAAAATGA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28094030 221 +  39895921 TACGTGATCCACTCTAGAGCCTTCCAGAAGCC--------CTGTGATGAACCCCATTTCCTAGGACTCACTCATAACACTACCCACTAACTTCCTCAGAAAGGCCTCCTGTAAACAGGCAAG----CTGAAGCCATTCTGTTCTGCTCATCTCTTCCTGGAAACCTCCATCCAATAGTGACAAAAACGTCCTTTCCTTACACCATCAGGTCTGTGCTTACAATTATGAAACAA
i canFam3.chr31             I 470 I 18
e mm10.chr16                 91588181 7392 +  98207768 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=276544.000000
s hg38.chr21_GL383581v2_alt     76552 119 +    116689 ggccgggcatggtggctcatgcctgttatccca--actttgggaggccaaggcaggtggatcatgaggtcaggatttcgagaccagcctggccaacatagtgaaaccccatctctactaaa
s panTro4.chr21              19580668 119 +  32799110 ggccgggcatggtggctcatgcctcttatccca--actttgggaggccaaggcaggtggatcatgaggtcaggattttgagaccagcctggccaacatagtgaaaccccatctctactaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34484195 119 +  48394510 Tgccgggcatggtggctcatgcctgttatccca--actttgggaggccgaggcaggtggatcatgagatcaggatttcgagaccagcctggccaacatagtgaaaccccacctctactaaa
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185168605 121 - 198365852 ggccaggcatggtggctcatgcctgttatcccaacactttgggaggccgaggaaggtggatcacgaggtcaggagttcgagaccaccctggccaacatagtgaaaccccatctctactaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179007691 121 - 192294377 ggccaggcatggtggctcatgcctgttatcccaacactttgggaggccgaggaaggtggatcacgaggtcaggagttcgagaccaccctggccaacatagtgaaaccccatctctactaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167391934 121 - 180432695 ggccaggcatggtggctcatgcctgttatcccaacactttgggaggccgaggcaggtggatcacgaggtcaggagttcgagaccaccctggccaacatagtgaaaccccatctctactaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665011 121 -  90373283 ggccaggcatggtggctcatgcctgtcatcccaacactttgggaggctgaggcaggtggatcacgaggtcaggagttcgagaccaccctggccaacgtagtgaaaccccatctctactaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37478602 121 +  50472720 ggctgagcacggtgactcacgcctataatcccagcactttgggaggctgaggcaggtagatcacaatactgggagttcaagaccagcctggccaacatagtgaaaccccatctctactaaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251  18 +  39895921 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=110967.000000
s hg38.chr21_GL383581v2_alt     76671 245 +    116689 aatacaaaaattag----------------------------ccagctactcaggaggctgaggaaggagaattgcttgaa--tctgggaggcagaggttgcggtgagccaagatcacgccactgcactccagcctgggtgacagagcaagactccgtctcagaaaaa--------------taaat--aaaaTG----AAATTTCAATCCCAAATTTAGAAAGTTCTAGCACTggctgggtgcggtggttcatgcctgtaatcccagcactttgggaggccaaggtggacagat
s panTro4.chr21              19580787 245 +  32799110 aatacaaaaattag----------------------------ccagctactcaggaggctgaggaaggagaattgcttgaa--tctgggaggcagaggttgcgatgagccaagatcacaccactgcactccagcctgggtgacagagcaagactctgtctcagaaaaa--------------taaat--aaaaTG----AAATTTCAATCCCAAATTTAGAAAGTTCTAGCACTggctgggtgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtggacagat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34484314 243 +  48394510 aatacaaaaattag----------------------------ccagctactcaggagggtgaggaaggagaattgcttgaa--tctgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctgggtgacagaacaagact--gtctcaaaaaaa--------------taaat--aaaaTG----AAATTTCAATCCCAAATTTAGAAAGTTCTAGCATTggctgggtgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggcagat
i ponAbe2.chr21             C 0 T 7259
s calJac3.chr21              37478723 295 +  50472720 aatacaaaaattagccgggcatggtggtgcatacctatagtcccagctacttgggaggctgaggaaggagaatcacttgaatttttgggaggcagaagttgcagtgagccaagatcacaccgctgcattccagcctgggcaacagagcaagattccgtctcaaaaaaaaaaaaaaaTACATTTAAATTAAAAATGATAAAAATTTCAGTCCCAAATTGAGAAACATCTAGCACTggccaggcacagtggctgacacttgtaattccagcactttgggaggccgaggtgggcgaat
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251  18 +  39895921 I
e rheMac3.chr3              185168726   0 - 198365852 C
e chlSab2.chr2               31665132   0 -  90373283 C
e papAnu2.chr3              167392055   0 - 180432695 C
e macFas5.chr3              179007812   0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=30457.000000
s hg38.chr21_GL383581v2_alt     76916 62 +    116689 tacttgaggtcaggagttcaagaccagcccggccaacatggtgaaaccccatttctactaat
s panTro4.chr21              19581032 62 +  32799110 tacttgaggtcaggagttcaagaccagcccggccaacatggtgaaaccccatttctactaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34477298 62 +  48394510 tacttgaggtcaggagttcaagaccagcccggccaacatggtgaaaccccatctctactaaa
i ponAbe2.chr21             T 7259 C 0
s calJac3.chr21              37479018 61 +  50472720 cacttgaggtca-gagttcgagactagcttggccaacatagtgaaaccccatctctactaaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251 18 +  39895921 I
e rheMac3.chr3              185168726  0 - 198365852 C
e chlSab2.chr2               31665132  0 -  90373283 C
e papAnu2.chr3              167392055  0 - 180432695 C
e macFas5.chr3              179007812  0 - 192294377 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=92642.000000
s hg38.chr21_GL383581v2_alt     76978 41 +    116689 aatacaaaaattagcctggcgtggtggcgcacgcctgaaac
s panTro4.chr21              19581094 41 +  32799110 aatacaaaaattagccgggcgtggtggcgcacgcctgaaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34477360 41 +  48394510 aatacaaaaattagccaggcgtggtggcacacatctgaaac
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185168726 41 - 198365852 aatacaaaaattagccgggcatgctggcacacacctgaaac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179007812 41 - 192294377 aatacaaaaattagccgggcatggtggcacacacctgaaac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167392055 41 - 180432695 aatacaaaaattagccgggcatggtggcacacacctgaaac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665132 41 -  90373283 aatacaaaaattagccgggcatggtggcacacacctgaaac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37479079 41 +  50472720 aatacaaaaattagccaggcatgatggtgtgcgcctgtaat
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251 18 +  39895921 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=110581.000000
s hg38.chr21_GL383581v2_alt     77019 61 +    116689 cttagctactcgggagactgaagcaggagaatcacttgaacctggaaggcagaggttgcag
s panTro4.chr21              19581135 61 +  32799110 cttagctactcgggagactgaagcaggagaataacttgaacctggaaggcagaggttgcag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34477401 61 +  48394510 cttagctactcgggagactgaggcaggagaatcacttgaacctgtaaggcggaggttgcag
i ponAbe2.chr21             C 0 I 9001
s rheMac3.chr3              185168767 61 - 198365852 cttggctactcaggagactgaggcaggagaattgcttgaacctggaaggtggaggttgcag
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179007853 61 - 192294377 cttggctactcaggagactgaggcaggagaattgcttgaacctggaaggtggaggttgcag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167392096 61 - 180432695 cttggctactcaggagactgaggcaggagaattgcttgaacctggaaggtggaggttgcag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665173 61 -  90373283 cttggctactcaggagactgaggcaggagaattgcttgaacctggaaggtggaggttgcag
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251 18 +  39895921 I
e calJac3.chr21              37479120  0 +  50472720 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=405246.000000
s hg38.chr21_GL383581v2_alt     77080 241 +    116689 tgagccaagatggcaccactgcactccagctgggcaacagagggagactccatctcaaaaaaaaaaaa-----------gaaaGCTCGggctgggcgcgatggctcatgcctgtaatcccagcactttgggaggccgagatggacggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaatagccgggtgtgatggcgggcgcctgtagtt
s panTro4.chr21              19581196 239 +  32799110 tgagccaagatggcaccactgcactccagctgggcaacagagcgagactccgtctcaagaaaaaaaaa-------------aaGCTCGggctgggcacgatggcttatgcctgtaatcccagcactttgggaggctgagatggacggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaaatagccgggtgtgatggcgggcgcctgtagtt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34486463 252 +  48394510 tgagccaagatggcaccactgcactccagctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaaagaaaagaaaGCTCAggctgggcacgatggctcatgcctgtaatcccagcactttgggaggccgagatggacggatcacaaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaataataaaaaatagccgggtgtgatggcgggcgcctgtagtt
i ponAbe2.chr21             I 9001 C 0
s rheMac3.chr3              185168828 233 - 198365852 tgagccaagatggcaccactgcactccacctgggcaactgagcgaaactcggtctcaaaaaa-------------------aaGCTCAgactgggcacgatggctcacacctgtaatcccagcactttaggaggccaagacaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaactccgtctctactaaaaatacaaaaaagtagccgggcgaggtggcgggtgcctgtagtc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179007914 233 - 192294377 tgagccaagatggtaccactgcactccacctgggcaactgagcgaaactcggtctcaaaaaa-------------------aaGCTCAgactgggcgcgatggctcacacctgtaatcccagcactttaggaggccaagacaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaactccgtctctactaaaaatacaaaaaagtagccgggcgaggtggcgggtgcctgtagtc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167392157 233 - 180432695 tgagccaagatggcaccactgcactctacctgggcaactgagcgaaactcggtctcaaaaaa-------------------aagctcaggctgggcgcgatggctcacacctgtaatcccagcactttaggaggccgagacaggcggatcacgaggtcaggagatcgagatcatcctggctaacacggtgaaactccgtctctactaaaaatacaaaaaagtagccaggcgaggtggcgggtgcctgtagtc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665234 233 -  90373283 tgagccaagatggcaccactgcactccagctgggcaactgagcaaaactcggtctcaaaaaa-------------------aaGCTCAggctgggcgtgacggctcacacctgtaatcccagcactttaggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaactccgtctctactaaaaatacaaaaaagtagccgggcgaggtggcgggtgcctgtagtc
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251  18 +  39895921 I
e calJac3.chr21              37479120   0 +  50472720 C
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=256003.000000
s hg38.chr21_GL383581v2_alt     77321 128 +    116689 ccagctacttgggaggctgaggcaggagaatggcgagaacctgggaggcagagcttgcagtgagtggagatctcgccactgcactccaggctgggtgacag------a--gccagactccgtctcaaaaaa-aaaaa
s panTro4.chr21              19581435 128 +  32799110 ccagctacttgggaggctgaggcaggagaatggcgagaacctgggaggcagagcttgcggtgagtggagatcttgccactgtactccaggctgggtgacag------a--gccagactccgtctcaaaaaa-aaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34486715 134 +  48394510 ccagctactcgggaggctgaggcaggagaatggagagaacctgggaggcagagcttgcggtgagtggagatctcgccactgcactctaggctgggtgacagagcgaca--gcgagactccgtctcaaaaaa-aaaaa
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185169061 129 - 198365852 ccagctactcgggaggctgtggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagattgcgcccctgcactccagcctgggtgacag------a--gtgagattccatctcaaaaaacaaaac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179008147 130 - 192294377 ccagctactcgggaggctgtggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagattgcgcccctgcactccagcctgggtgacag------agtgtgagattccatctcaaaaaa-aaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167392390 123 - 180432695 ccagctactcgggaggctgtggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagattgcgcccctgcactccagcctgggtgacag------a--gtgagattccatctcaaaaaa------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665467 128 -  90373283 ccagctactcgggaggttgtggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccaagattgcgcccctgtactccagcctgggtgacag------a--gtgcgattccatctcaaacaa-aaaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37479120 128 +  50472720 ccagctacttgggagactgaagaaggagaattgcttgaacctggaaggcaaagattgcagtgagtgaagatttcgccattacaatccagcctgggcgacag------a--gcaagtctccatctcaaaaaa-aaaaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094251  18 +  39895921 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=846867.000000
s hg38.chr21_GL383581v2_alt     77449 324 +    116689 a-------------gaaaGCTCTAGCATTTTCTAATAAGTATGTCTGGACTTCATCTACACTCTCAGGGACAGAAC----------TTTGTTATTACCGTTTAT--TTAATGAACAGCCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTGAGGCTTAACTGTAGAAATTAATGAGGTGTTTTGA-TTTTATAGCCTGgta-agaaaatcaatcccaaagatattatga-ttttgttgccctgtggaacattaaccaatca-aactaacttagccacaatactgagacatttctttccctacaaattacataaatatcaattccttatatcctctt--aaaaccagctt-
s panTro4.chr21              19581563 336 +  32799110 aaaaaaaaaaaaaagaaaGCTCTAGCATTTTCTAATAAGTATGTCTGGACTTCATCTACACTCTCAGGGACAGAAC----------TTTGTTATTATAGTTTAT--TTAATGAACAGCCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTGAGGTTTAACTGCAGAAATTAATGAGGTGTTTTGA-TTTTATAGCCTGgta-agaaaatcaatcccaaagatattatga-ttgtgttgccctgtggaacattaaccaatca-aactaacttagccataatactgagacatttctttccctacaaattacataaatatcaattccttatatcctctt--aaaaccagct--
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34486849 333 +  48394510 a---aaaaaaaaaagaaaGCTCTAGCATTTTCTAATAAGTATGTCTGGACTTCATCTATGCTCTCAGGGACAGAAC----------TTTGTTATTACAGTTTAT--TTAATGAACAGCCCACTATTAAT--------AAAGATGAAGACAGTTTATAGCCCTCTGAGGTTTAACTGCAGAAATTAATGAGGTGTTATGA-TTTTATAGCCTGAta-agaaaatcaatcccaaagatattatta-ttttgttgccctgtggaacattaaccaatta-aactaacttagccataatactgagacatttctctccctacaaattacataaatatcaattccttatatcctctt--aaaaccagct--
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185169190 327 - 198365852 a---------aaaaaaaaGCTCCAGCATTTTCTAATAAGTATGTCTGGACTTCATCTACGCTCTCAGGGACAGAAC----------TTTGTTATTACAGTTTAT--TTAATGAACAACCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTGGGGTTTAACTGCAGAAATTAATGAGGTGTTATGA-TTTTATAGCCTGgta-agaaaatcaatcccaaagatattatga-ttttgttgccttgtggaacattaaccaatta-aactaacttagtcatactattgagacttttctttccctacaaactgcataaatgccgattccttatatcctttt--aaaaccagct--
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179008277 327 - 192294377 a---------aaaaaaaaGCTCCAGCATTTTCTAATAAGTATGTCTGGACTTCATCTACGCTCTCAGGGACAGAAC----------TTTGTTATTACAGTTTAT--TTAATGAACAACCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTGGGGTTTAACTGCAGAAATTAATGAGGTGTTATGA-TTTTATAGCCTGgta-agaaaatcaatcccaaagatattatga-ttttgttgccttgtggaacattaaccaatta-aactaacttagtcatactattgagacttttctttccctacaaactgcataaataccgattccttatatcctttt--aaaaccagct--
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167392513 326 - 180432695 ----------aaaagaaagctccagCATTTTCTAATAAGTATGTCTGGACTTCATCTATGCTCTCAGGGACAGAAC----------TTTGTTATTACAGTTTAT--TTAATGAACAACCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTGGGGTTTAACTGCAGAAATTAATGAGGTGTTATGA-TTTTATAGCCTGGTA-AGAAAATCAATCCCAAAGATATTATGA-TTTTGTTGCCCTGTGGAACATTAACCAATTA-AACTAACTTAGTCATACTATTGAGACTTGTCTTTCCCTACAAACTGCATAAATACCGATTCCTTATATCCTTTT--AAAACCAGct--
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665595 327 -  90373283 a---------aaaagaaaGCTCCAGCATTTTCTAATAAGTATGTCTGGACTTCATCTACGCTCTCAGGGACAGAAC----------TTTGTTATTACAGTTTAT--TTAATGAACAACCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTGAGGTTTAACTGCAGAAATTAATGAGGTGTTATGA-TTTTATAGCCTGgta-agaaaatcaatcccaaagatattatga-ttttgttgccctgtggaacattaaccaatta-aactaacttagtcatactattgagacttttctttccctacaaactgcataaataccgattccttatatcctttt--aaaaccagct--
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37479248 322 +  50472720 a----------------aGCTCTAGCATTTTCTAATAAGCATGTCTGGACTTCATCTGTGCTCTCAGGGACAGAACT---------TTTGTTATTACAGTTTAT--TTAATGAACAACCCACTATTAAT--------AAAGATGCAGACAGTTTATAGCCCTCTAAGATTTAGATGCAGAAATAAATGAGGTGTTCTga-ttttacagcctggta-agaaaatcaatcccgaagatattatggtttttgttgccctgtggaacattgaccaatta-aactaatttagccatataattgagacattcctttccctacaaactacataaacatcgattctttatatcctctt--aaaaccagct--
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28094269 338 +  39895921 -------------AGAAAGTTCTAGTATTTTCTAAGAAGCCTGTTTGGAGTTCAGCTGCACTCTGGGGGGAAAaattaataattaattaattataatgaactataattaat-aataactaattattaattTAATGGAAAAGAC----ACAGTTTATAGTCCTGTAAGATTTAACTGGAGAAATTAATAAGGTGTTATGATTtttctagcctggaagaaaagagtaattccaaaggcatgattt-ttttgctgctgtctggaacattaactgattatatcttactcggcaattttgttcagacattcttttccctgtggactacata------tgttccttaaattatcttaaaaaaccagtt-t
i canFam3.chr31             I 18 I 251
e mm10.chr16                 91588181 7392 +  98207768 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=805913.000000
s hg38.chr21_GL383581v2_alt     77773 374 +    116689 ctttggccaggcatggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggcagatcacctaaggtcaggagttcgagaccagcctgtgctggccaggctggtgaaacccgg-ctctacttaaaatacaaaaattagccgggcatggtggcaggcgcctttaatcctagctactcaggagtctgaggc---agaactgcttgagcccgggaagaggaggttgca-gtgagctgagaccatgccactgtaccccggcctgggcaacagagccagactccatctcaa----aaca------aaac--aaaa-----acacagctcttt------------gaggt-actctcaataatagtaaaacaaaactgaaacacgctccctatctatctgcatgaga
s panTro4.chr21              19581899 380 +  32799110 ctttggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcacctaaggtcaggagttcgagaccagcctgtgctggccaggctggtgaaaccccatctctacttaaaatacaaaaattagccgggcatggtggcaggcgcctataatcctagctactcaggagtctgaggc---agaactgcttgagcccgggaggaggaggttgca-gtgagctgagaccatgccactgtaccccggcctgggcaacagagccagactccatctcaa----aaca------aaac--aaaacaaaaacacagctcttt------------taagt-actctcaataatagtaaaacaaaactgaaacacgctccctatctatctgcatgaga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34487182 380 +  48394510 ctttggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcacctaaggtcaggagtttgagaccagcctatgctggccaggctggtgaaaccccgtctctacttaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcctagctactcaggagtctgaggc---agagctgcttgagcccaggaggaggaggttgca-gtgagctgagaccatgccactgtaccccagcctgggcgacagagccagactccatctcaa----aaca------aaac--aaaacaaaaacacagctcttt------------gaggt-actctcaataatagtaaaacaaaactgaaacatgctccctatctatctgcatgata
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185169517 378 - 198365852 ctTTggctgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggtgggcagatcacctaaggtcaggagtttgagaccagc-----ctggccagcatggtcaaagcccatctatacttaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcctagctactcagaagcctgaggc---agaactgcttgagtccgggaggagaaggttgca-gtgagctgagatcatgccactgtaccccagcctgggcgacagagccagactccaactcaa----aaca------aaac--aaaa-----acacagctctca----aaacaaaaaaaaa-CCTCTCAATAATAGTAAAACAAAACTGAAACACACTGCTTAACTATCCGCATGAGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179008604 378 - 192294377 ctttggctgggcacggtggctcacacctgtaatcccagcactttgggagcccaaggtgggcagatcacctaaggtcaggagtttgagaccagc-----ctggccagcatggtcaaagcccatctatacttaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcctagctactcagaagcctgaggc---agaactgcttgagtccgggaggagaaggttgca-gtgagctgagatcatgccactgtaccccagcctgggcgacagagccagactccaactcaa----aaca------aaac--aaaa-----acacagctctca----aaacaaaaaaaaa-actctcaataatagtaaaacaaaactgaaacacactgcttaactatccgcatgaga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167392839 379 - 180432695 ctttggctgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggtgggcagatcacctaaggtcaggggtttgagaccagc-----ctggccagcatggtcaAAGCCCATCtatacttaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcctagctactcagaagcctgaggc---agaactgcttgagtccgggaggagaaggttgca-gtgagctgagatcatgccactgcaccccagcctgggtgacagagccagactccaactcaa----aaca------aaac--aaaa-----acacagctctca----aaacaaaaaaaaagcctctcaataacagtaaaacaaaactgaaacacaCTGCTTAACTATCCGCATGAGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31665922 384 -  90373283 ctTTggctgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggtgggcagatcacctaaggtcaggagtttgagaccagc-----ctggccagcatggccaaagcccatctctacttaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcctagctactcagaagcctgaggc---agaactgcttgagcccgggaggagaaggttgca-gtgagctgagatcatgccactgcaccccagcctgggcgacagagccagactccaactcaa----aaca------aaacaaaaaa-----aCACAGCTCTCAAAACAAACAAAAAAAAA-ACTCTCAATAATAGTAAAACAAAACTGAAACACACTGCTTAACTATCTGCATGAGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37479570 381 +  50472720 tgctggctgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcaaatcacctgaggtcaggagttcaagaccagc-----ctggccagcctggtgaaacccagtctctactaaaaatacaaaaattaaccaggtgtggtggcgtgcacctgtaatcccagctacttaggaggctgaggcaggagaattgcttgcgcccaggaggaagaggttgcaggtgagccgagatcatgccactgcactccagcctgggtgacagagccagacttcatctcaaaaacaacaaaaaacaaac--aaaa-----aaacagctcttt------------agagt-actctcaataatag---agcaaaactgacacatgctcactatttatctttattaga
i calJac3.chr21             C 0 I 140
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094607 251 +  39895921 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=651274.000000
s hg38.chr21_GL383581v2_alt     78147 306 +    116689 attgtgtttgtaacACCATTCATTCAAAACTAA----------ggtggctcaccactgtaatcccagcactttgtgaggccaaggtgggtggatcacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaacc-ccatccttactaaaaat-aaaaaaactagccgggcataatggcggtcacctgtaatcctagctacttgggaggctgagacaggagaaccacttgaacccagaaggcagaggcagcagtgagccgagattgtgccact-gcactccagcctgggtaacagagcaagactctgtctc---------------c
s panTro4.chr21              19582279 306 +  32799110 attgtgtttgtaacACTATTCATTCAAAACTAA----------ggtggctcaccactgtaatcccagcactttgtgaggccaaggtgggtggatcacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaacc-ccatccctactaaaaat-aaaaaaactagccgggcataatggcggtcacctgtaatcctagctacttgggaggctgaggcaggagaaccacttgaacccagaaggcggaggcagcagtgagccgagattgtgccact-gcactccagcctgggtaacagagcaagactctgtctc---------------c
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34487562 307 +  48394510 attgtgtttgtaacACTATTCATTCAAAACTAA----------ggtggctcacgactgtaatcccagcactttgtgaggccaaggtgggtggatcacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaacc-ccatccctactaaaaat-aaaaaaactagccaggcgtgatggcggtcacctgtaatcccagctacttgggaggctgaggcaggagaaccgcttgaacccagaagacggaggcagcagtgagccgagattgtgccactggcactccagcctgggtaacagagcaagactctgtctc---------------c
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185169895 305 - 198365852 ATTGTGTTTCTAACACTATTCATTCAAAACAAA----------ggtggctcacaccggtaatcccagcactttgtgaggccgaggcagatggaccacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaacc-aggtttctactaaaaat-aaaaaaactagccgggtgtggtggtggtcacctgtaatcccagctactccagcggctgaggcaggagaatcgcttgaacccagaaggcgaaggcagcagtgagctaagactgcgccagt-gcactccagcctgggtaacagagcaagactctgtctc----------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179008982 305 - 192294377 attgtgtttctaacACTATTCATTCAAAACAAA----------ggtggctcacaccggtaatcccagcactttgtgaggccgaggcagatggaccacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaacc-aggtttctactaaaaat-aaaaaaactagccgggtgtggtggtggtcacctgtaatcccagctactccagcggctgaggcaggagaatcgcttgaacccagaaggcgaaggcagcagtgagctaagactgcgccagt-gcactccagcctgggtaacagagcaagactctgtctc----------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167393218 311 - 180432695 ATTGTGTTTCTAACACTATTCATTCAAAACAAA----------GGTGGCTcccaccggtaatcccagcactttgtgaggccgaggcagatggaccacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaacc-aggtttctactaaaaat-aaaaaaactagccaggtgtggtggtagtcacctgtaatcccagctactccagtggctgaggcaggagaatcgcttgaacccagaaggcaaaggcagcagtgagctaagactgcgccaat-gcactccagcctgggtaacagagcaagactctgtctc----------aaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31666306 322 -  90373283 ATTGTGTTTCTAACACTATTCATTCAAAACAAA----------ggtggctcacaccggtaatcccagcactttgtgaggccgaggcagatggaccacctgaggtcaggaattcaaga----ccagcctggccaacctggagaaact-cagttcctactaaaaataaaaaaaactagccgggtgtggtggtggtcacctgtaatcccagctactccagcggctgaggcagaagaatcccttgaacccaaaaggcgaaggcagcagtgagctaagactgcgccagt-gcactccagcctgggtaacagagcaagactctgtctcaaacaaaaacaaacaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37480091 319 +  50472720 ATTGTGTTTCTAACACTGTTCATACAAAACTAAggccaggcatggtgactcatgcctgtaatcctagcactctgtgagaccaaggtaggtggatcacctgaggtcaggagatcaagactagctagcctggccaacctggagaaacctccgtctctactaaaaat-acaaaaattagccgggtgtggtggcaggcgcctctaatcccagct-ctcaggacgctgaagcaggagaattgcttgaacctgggaaatggaagctgcagtgagccgagatcacaccact-gcactccactctgggtaacacagtgagtctctatctc----------------
i calJac3.chr21             I 140 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28094607 251 +  39895921 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=341471.000000
s hg38.chr21_GL383581v2_alt     78453 154 +    116689 aaaaaaaaaaaaaaaaaaaaaa----------CCCACTAAGTATACTGTTTAGGATATAGGAGTGTGTGTGCAAatttatgtatatatttgtaaac----atgcacatacgtataaatgtatatgtatgtgaatttat----------------gtatacatgcatAAAGCTTATTTTAAAAAG--------------
s panTro4.chr21              19582585 148 +  32799110 aaaaaaaaaaaaaaaa----------------CCCACTAAGTATACTGTTTAGGATATAGGAGTGTGTGTGCAAatttatgtatatatttgtaaac----atgcacatatgtataaatgtatatgtatgtgaatttat----------------gtatacatgcataAAGCTTATTTTAAAAAG--------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34487869 144 +  48394510 aaaaacaaaaaa--------------------CCCACTAAGTATACTGTTTAGGATATAGGAGTGTGTGTGCAAatttatgtatatatttgtaaac----atgcacatatgtataaatgtatatgtatgtgaatttat----------------gtatacatgcataAAGCTTATTTTAAAAAG--------------
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185170200 168 - 198365852 aaaaaaaaaaaaaaaa----------------aCCACTAAATACACTGTTTGGGATATAGGAGTGTGTCTGCAAatttatgtatatatttgtaaacatttatgcacatatgtataaatgtatatgtacatGaatttatatgtttatgaatttacgtatacatgcataaagcttattttaaaaag--------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179009287 168 - 192294377 aaaaaaaaaaaaaaaa----------------aCCACTAAATACACTGTTTAGGATATAGGAGTGTGTCTGCAAATTtatgtatatatttgtaaacatttatgcacatatgtataaatgtatatgtacatgaatttatatgtttatgaatttatgtatacatgcataaagcttattttaaaaag--------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167393529 168 - 180432695 aaaaaaaaaaaaaaaa----------------accactaaataCACTGTTTAGGATATAGGAGTGTGTCTgcaaatttatgtatatatttgtaaacatttatgcacatatgtataaatgtatatgtacatgaatttatatgtttatgaatttatgtatacatgcataaagcttattttaaaaag--------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31666628 152 -  90373283 acaaacaaacaaaaAA----------------AACACTAAATACACTGTTTAGGATACAGGAGTGTGTCTGTAAATTTATGTATATATTTGTAAATATTTATGCACATATGTATAaatgtatatgtacatgaatttat----------------gtatacatgcataaagcttattttaaaaag--------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37480410 144 +  50472720 ----aaaaaaaaaaaa----------------aCCACTGAATATACTGTTTAGGATACAGGAGTGTGAGTGCAAatttatg----tatctgtaaacatttatgtacgtacgtgtaaacttatatgtatgtgaatttat----------------gtatatatgcatAAAGCTTATTTTTAAAAG--------------
i calJac3.chr21             C 0 I 751
s canFam3.chr31              28094858 174 +  39895921 aaaaaatattaaaaaaGTAAAACTGTTCATTCAAAACCAAATACATTG-GTAGGAT----GGgtatgtgtgtatgtgtctgc---tgtgtgtgtgcatttatgtatatgtgtaaatatatatgtatatgtgtatttgt----------------gtatatatgtGTAAAGCTTATTTTATAAAGCTTATTTTAAAAAG
i canFam3.chr31             I 251 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=16044.000000
s hg38.chr21_GL383581v2_alt     78607 6 +    116689 CAAGAg
s panTro4.chr21              19582733 6 +  32799110 CAAGAg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34488013 6 +  48394510 CAAGAG
i ponAbe2.chr21             C 0 I 1039
s rheMac3.chr3              185170368 6 - 198365852 caagag
i rheMac3.chr3              C 0 I 1384
s macFas5.chr3              179009455 6 - 192294377 caagag
i macFas5.chr3              C 0 I 4811
s papAnu2.chr3              167393697 6 - 180432695 caagag
i papAnu2.chr3              C 0 I 1076
s chlSab2.chr2               31666780 6 -  90373283 caagag
i chlSab2.chr2              C 0 I 1166
s canFam3.chr31              28095032 6 +  39895921 CAAGAG
i canFam3.chr31             C 0 I 936
e mm10.chr16                 91588181 7392 +  98207768 I
e calJac3.chr21              37480554 751 +  50472720 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=97289.000000
s hg38.chr21_GL383581v2_alt     78613 1092 +    116689  
s panTro4.chr21              19582739 1063 +  32799110  
i panTro4.chr21             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28095038  936 +  39895921 I
e ponAbe2.chr21              34488019 1039 +  48394510 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37480554  751 +  50472720 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I
e macFas5.chr3              179009461 4811 - 192294377 I
e nomLeu3.chr25              20008929 4003 +  32716333 I

a score=35296.000000
s hg38.chr21_GL383581v2_alt     79705 138 +    116689 acctcgtgatccacccgccttggcct-cccaaagtgctgggaatacaggcgtgagccaccgcgcccagGAAGAAATTACTTTTAAAAAAGAACAAGCAgctgggtgcggtggcttactcctgtaatcccagcactttgg
s panTro4.chr21              19583802 138 +  32799110 acctcgtgatccacccgccttggcct-cccaaagtgctgggaatacaggcgtgagccaccgcgcccagGAAGAAATTACTTTTAAAAAAGAACAAGCAgctgggcgcggtggcttactcctgtaatcccagcactttgg
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20012932 139 +  32716333 acctcatgatctgcccaccttggcctccccaaagtgctgggattacaggcgtgagccaccatgcccagGAAGAAATTACTGTTAAAAAAGAACAAGCAgctgggcgcgatggctcacgcctgtaatcccagcactttgg
i nomLeu3.chr25             I 4003 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28095038 936 +  39895921 I
e ponAbe2.chr21              34488019 1039 +  48394510 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37480554 751 +  50472720 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I
e macFas5.chr3              179009461 4811 - 192294377 I

a score=53073.000000
s hg38.chr21_GL383581v2_alt     79843 132 +    116689 gaggccaaggtgggcagatca-----tgaggtcaggagaacaagacaatcctggctaacacgttgaaaccccatctctaataaaaatacaaaaaatcagctgggcgtggtggcacccacctgtagtcccagctactc
s panTro4.chr21              19583940 132 +  32799110 gaggccaaggtgggcagatca-----tgaggtcaggagaacaagacaatcctggctaacacgttgaaaccccatctctaataaaaatacaaaaaattagctgggcgtggtggcacgcacctgtagtcccagctactc
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20013071 127 +  32716333 gaggccaaggtgggcagatca-----tgaggt-aggagaacaagaaaatc----ctaacacgttgaaaccccatctctaataaaaatacaaaaaattagctgggcgtggtggcacgcacctgtagtcctagctactc
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014272 134 - 192294377 GGAgccaaggtgggtggatcacctgctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccccgtctctgctaaaaatac--aaaattagccggg-gtggtggcgcatgtctgtaattccagctactc
i macFas5.chr3              I 4811 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28095038 936 +  39895921 I
e ponAbe2.chr21              34488019 1039 +  48394510 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37480554 751 +  50472720 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I

a score=70188.000000
s hg38.chr21_GL383581v2_alt     79975 104 +    116689 gggaggctgaggcagg-agaatcacttaaacccaggaggtggaggttgcag-tgagcc-aagatctc-accactgcactccgg-cctgggcagc-agagcCCCCTCTAAT
s panTro4.chr21              19584072 104 +  32799110 gggaggctgaggcagg-agaatcacttaaacccaggaggtggaggttgcag-tgagcc-gagatctc-gccactgcactccgg-cctgggcaac-agagcCCCCTCTAAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489058 109 +  48394510 gggaggcggaggcaggcagaatcacataaacccagaaggtggagattgcagttgagcctgagatctaggccaccgcactccggccctgggcaac-agagcCCCCTCTAAT
i ponAbe2.chr21             I 1039 C 0
s nomLeu3.chr25              20013198 104 +  32716333 gggaggctgaggcagg-agaatcacttaaacccaggaggtggaggttgcag-tgagcc-aagatctc-accactgcactccag-cctgggcaac-agagcCCTCTCTAAT
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014406  95 - 192294377 gggaggttgaggcagg-agaattgcttgaacctgggagatggaggttgcgg-tgagcc-aagatcat-gccattgcactccag-cctgggcaacaagagc----------
i macFas5.chr3              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28095038 936 +  39895921 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37480554 751 +  50472720 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I

a score=145640.000000
s hg38.chr21_GL383581v2_alt     80079 151 +    116689 CTGAAGGACCTCTCTTATCACTTCTGCCAACCCAATTAAATGAGGCAATATAACCTTAAGGTCAACACC-ACTTCGTGGTAAGAAGAGTAATAAATCCTCTATTATTTAATACAGTCTTCAAAATTTTC-TGTT-------CCAGCCTCTAAA-TATAAAA
s panTro4.chr21              19584176 151 +  32799110 CTGAAGGACCTCTCTTATCACTTCTGCCAACCCAATTAAATGAGGCAATATAACCTTAAGGTCAACACC-ACTTCGTGGTAAGAAGAGTAATAAATCCGCTATTATTTAATACAGTCTTCAAAATTTTC-TGTT-------CCAGCCTCTAAA-TATAAAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489167 151 +  48394510 CTGAAGGCCCTCTCTTATCACTTCTGCCAACCGAATTAAATGAGACAATATAACCTTAAGGTCAACACC-ACTTCGTGATAAGAAGAGTAATAAATCCGCTATTATTTAATACAGTCTTCAAAATTTTC-TGTT-------CCAGTCTCTAAA-TATAAAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013302 151 +  32716333 CTGAAGGCCCTCTCTTATCACTTCTGCCAACCCAATTAAATGAGACAATATAACCTTAAGGTCAACACC-ACTTCGTGGCAAAAAGAGTAATAAATCCGCTATTATTTAATACAGTCTTCAAAATTTTC-TGTT-------CCAGTCTCTAAA-TATGAAA
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014501  89 - 192294377 ---aaaactccgtct----------------ctaaataaataa---aaTAT--------------------------------ACGGATATTAGAAATGC----ATTTAAT------TCCAATAGATTT-AGCT-------ACTGCTTTTAAATTATAAAA
i macFas5.chr3              C 0 C 0
s calJac3.chr21              37481305 150 +  50472720 CTGAAAGGCC-CTCTAATCATTTCTGCCAATCCAATTAAATGAAGCAATATAACCTTAAGATCGACACC-ACCTCGTGTTAAGAACAGTAATAAATTCACCATTACTTTATACAGTCTTCAAACTTTTC-TATT-------CCAGTCTCTAAA-TATAAAA
i calJac3.chr21             I 751 C 0
s canFam3.chr31              28095974 153 +  39895921 CTGAAGGCCTTCTCTATTTATTTCTACCAAGCCAATCAAATGAATGAATATAACCTTAAAGTCAACACCAACTAAGTGGAAACAA-------AAATTTACCATTATTTAACCTGGTCTTCAAAATTTTCTTGATCCAGTAACCAGTCTCTAAA-CATAAAA
i canFam3.chr31             I 936 I 3
e mm10.chr16                 91588181 7392 +  98207768 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I

a score=10023.000000
s hg38.chr21_GL383581v2_alt     80230 14 +    116689 ----GAATATATAGAgcc
s panTro4.chr21              19584327 14 +  32799110 ----GAATATATACAgcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489318 14 +  48394510 ----GAATATATGGagcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013453 14 +  32716333 ----GAATATATGGAgcc
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014590 18 - 192294377 TCTTTAAGTTATAATgtc
i macFas5.chr3              C 0 C 0
s calJac3.chr21              37481455 14 +  50472720 ----GAATATACAGAATC
i calJac3.chr21             C 0 I 54
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096127  3 +  39895921 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I

a score=27170.000000
s hg38.chr21_GL383581v2_alt     80244 38 +    116689 aggcacagtggctcatgcctgtaaacccaagactttgg
s panTro4.chr21              19584341 38 +  32799110 agacacagtggctcatgcctgtaaacccaagactttgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489332 38 +  48394510 gggcacagtggctcatgcctgtaaacccaaaactttgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013467 38 +  32716333 aggcacggtggctcatgcttgtaatcccagcatttggg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014608 38 - 192294377 aggcgtggtggctcatgcctataatcccaccactttgg
i macFas5.chr3              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096127  3 +  39895921 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37481469 54 +  50472720 I
e chlSab2.chr2               31666786 1166 -  90373283 I
e papAnu2.chr3              167393703 1076 - 180432695 I

a score=52387.000000
s hg38.chr21_GL383581v2_alt     80282 57 +    116689 gaggccta-ggtgggtggatccc---ctgagatcgggagttcaagaccagcctgac---------aaaag
s panTro4.chr21              19584379 57 +  32799110 gaggccta-ggtgggtggatccc---ctgagatcgggagttcaataccagcctgac---------aaaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489370 58 +  48394510 gaggccgacgttgggtggatcac---ctgaggtcgggagatcaagaccatcctgac---------aaaac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013505 57 +  32716333 gaggccaa-ggcgggtggatcac---ctgaggtcgggagttcaagaccagcctgac---------aaaac
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014646 64 - 192294377 gaggctgg-ggtaggtggatcac-----gaggtcaggagatcaagaccatcctggctaacatggtgaaac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167394779 69 - 180432695 ggagccaa-ggtgggtggatcacctgctgaggtcgggagttcaagaccagcctgaccaacatggagaaac
i papAnu2.chr3              I 1076 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096127  3 +  39895921 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37481469 54 +  50472720 I
e chlSab2.chr2               31666786 1166 -  90373283 I

a score=89982.000000
s hg38.chr21_GL383581v2_alt     80339 55 +    116689 cccgtctctactaagaatac--aaaattagccgag-gtggtggcgcatgtctgtaatc
s panTro4.chr21              19584436 55 +  32799110 cccgtctctactaagaatac--aaaattagccagg-gtggtggcgcatgtctgtaatc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489428 55 +  48394510 cccgtctctactaaaaatac--aaaattagccggg-gtggtggcacatgtctgtaatc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013562 55 +  32716333 cccgtctctactaaaaatac--aaaattagccggg-gtggtggcgcatgtctgtaatc
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014710 58 - 192294377 cccatctctaccaaaaatacaaaaaattatctgggcgtggtggcaggcgcctgtagtc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167394848 55 - 180432695 cccgtctctgctaaaaatac--aaaattagccggg-gtggtggcgcatgtctgtgatt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31667952 55 -  90373283 cccgtctctgctaaaaatac--aaaattagccggg-gtggtggcgcatgtctgtaatc
i chlSab2.chr2              I 1166 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096127  3 +  39895921 I
e rheMac3.chr3              185170374 1384 - 198365852 I
e calJac3.chr21              37481469 54 +  50472720 I

a score=257934.000000
s hg38.chr21_GL383581v2_alt     80394 131 +    116689 ccagctactcaggaggctgaggcaggagaattgcttgaacctgggagatggaggttgcagtgagccaagatcacgccattgcactccagcttgggcaacaagagcaaaactccgtctcaaaaaataataa----------------------------------a
s panTro4.chr21              19584491 153 +  32799110 ccagctactcaggaggctgaggcaggagaattgcatgaacctgggagatggaggttgcagtgagccaagatcacgccattgcactccagcctgggcaacaagagcaaaactccgtctcaaaaaataataataaataaat------------aaataaaaaTAAAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489483 165 +  48394510 ccagctactcaggaggctgaggcaggagaattgcttgaacctgggagacggaggttgcagtgagccaagattgtgccattgcactccagcctgggcaacaagagcaaaactccgtctcaaaaaataataataaataaataaataaaaataaaaataaaaataaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013617 145 +  32716333 ccagctactcggaaggctgaggcaggagaactgcttgaacccgggagacagaggttgcaatgagccaagatcgcgccattgcactccagactgggcaacaagagcgaaactccgtctcaaaaaa-aataataaat----------------aaataaaaat---a
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171758 130 - 198365852 ccagctacttgggaggctgaggcaggagaattgcttgaacctgggagatggaggttgcggtgagccaagatcatgccattgcactccagcctgggcaacaagagcaaaactccgtctctaaata-aataaa----------------------------------
i rheMac3.chr3              I 1384 C 0
s macFas5.chr3              179014768 129 - 192294377 ccaggtactcgggaggctgaggcaggagaatagcgtgaactgggaaggcggagcttgcagtgagcagagatcgcgccactgcactccagcctgggtgac-agagcgagactccgtctcaaaaaa-aaaaaa----------------------------------
i macFas5.chr3              C 0 T 374
s papAnu2.chr3              167394903 127 - 180432695 ccagctactcgggaggttgaggcaggagaattgcttgaacctgggagatgaaggttgcggtgagccaagatcatgccattgcactccagcctgggcaacaagagcaaaactccgtctctaaata-aat-------------------------------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668007 130 -  90373283 ccagctactcgggaggttgaggcaggagaactgcttgaacctgggagacggaggttgtggtgagccaagattgcaccattgcactccagcctgggcaacaagagcaaaactccgtctctaaata-aataaa----------------------------------
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096127   3 +  39895921 I
e calJac3.chr21              37481469  54 +  50472720 I

a score=1659.000000
s hg38.chr21_GL383581v2_alt     80525 2 +    116689 ag
s panTro4.chr21              19584644 2 +  32799110 AG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489648 2 +  48394510 aG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013762 2 +  32716333 aa
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179014523 2 - 192294377 aa
i macFas5.chr3              T 374 C 0
s papAnu2.chr3              167395030 2 - 180432695 aa
i papAnu2.chr3              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096127 3 +  39895921 I
e rheMac3.chr3              185171888 0 - 198365852 C
e calJac3.chr21              37481469 54 +  50472720 I
e chlSab2.chr2               31668137 0 -  90373283 C

a score=15567.000000
s hg38.chr21_GL383581v2_alt     80527 7 +    116689 aaTATAT
s panTro4.chr21              19584646 7 +  32799110 AATACAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489650 7 +  48394510 AATATAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013764 7 +  32716333 aATATAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171888 6 - 198365852 -aTATAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179014525 7 - 192294377 aaTATAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167395032 7 - 180432695 aatatat
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668137 6 -  90373283 -aTATAT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28096130 7 +  39895921 AAAACAC
i canFam3.chr31             I 3 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e calJac3.chr21              37481469 54 +  50472720 I

a score=66681.000000
s hg38.chr21_GL383581v2_alt     80534 24 +    116689 GGAATCTTAGAAATGCATTTAATT
s panTro4.chr21              19584653 24 +  32799110 GGAATCTTAGAAATGCATTTAATC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489657 24 +  48394510 GAAATCTTAGAAATGCATTTAATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013771 24 +  32716333 GGAATCTTAGAAATGCATTTAATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171894 23 - 198365852 GG-ATATTAGAAATGCATTTAATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179014532 23 - 192294377 GG-ATATTAGAAATGCATTTAATT
i macFas5.chr3              C 0 I 343
s papAnu2.chr3              167395039 23 - 180432695 gg-ataTTAGAAATGCATTTAATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668143 24 -  90373283 GGAATATTAGAAATGCATTTAATT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481523 24 +  50472720 GGAGTCCAAGAAATGCATTTAATT
i calJac3.chr21             I 54 C 0
s canFam3.chr31              28096137 22 +  39895921 AGATTCTAAGAAATGCATTTAG--
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I

a score=23654.000000
s hg38.chr21_GL383581v2_alt     80558 9 +    116689 CAAATAGAT
s panTro4.chr21              19584677 9 +  32799110 CAAATAGAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489681 9 +  48394510 CAAATAGAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013795 9 +  32716333 CAAATAGAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171917 9 - 198365852 CCAATAGAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179014898 9 - 192294377 caaaCTggc
i macFas5.chr3              I 343 T 343
s papAnu2.chr3              167395062 9 - 180432695 CCAATAGAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668167 9 -  90373283 CCAATAGAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481547 9 +  50472720 CAAATAGAT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28096159 7 +  39895921 --AACAAAT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I

a score=93585.000000
s hg38.chr21_GL383581v2_alt     80567 29 +    116689 TTAGCTACTGCTTTTAAATTATAAAATCT-
s panTro4.chr21              19584686 29 +  32799110 TTAGCTACTGCTTTTAAATTATAAAATCT-
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489690 29 +  48394510 TTAGCTACTGCTTTTAAATTATAAAATCT-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013804 28 +  32716333 TTAGCTACTGCttttaaattataaaatc--
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171926 28 - 198365852 TTAGCTACTGCTTTTAAATTATAAAATC--
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179014564 28 - 192294377 TTAGCTACTGCTTTTAAATTATAAAATC--
i macFas5.chr3              T 343 C 0
s papAnu2.chr3              167395071 28 - 180432695 TTAGCTActgcttttaaattataaaatc--
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668176 28 -  90373283 TTAGCTACTGCTTTTAAATTATAAAATC--
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481556 24 +  50472720 TTAGCTACTGCTTTTAAATTATAA------
i calJac3.chr21             C 0 I 25
s canFam3.chr31              28096166 29 +  39895921 TGAGCTACTGCCTTTAAATCATAAAATC-T
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I

a score=34834.000000
s hg38.chr21_GL383581v2_alt     80596 15 +    116689 TTTAAGTTATAACAT
s panTro4.chr21              19584715 15 +  32799110 TTTAAGTTATAACAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489719 15 +  48394510 TTTAAGTTATAACAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013832 15 +  32716333 tttaagttataacgt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171954 15 - 198365852 TTTAAGTTATAATgt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179014592 15 - 192294377 TTTAAGTTATAATgt
i macFas5.chr3              C 0 I 300
s papAnu2.chr3              167395099 15 - 180432695 tttAAGTTATAatgt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668204 15 -  90373283 TTTAAGTTATAATgt
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096195  0 +  39895921 C
e calJac3.chr21              37481580 25 +  50472720 I

a score=212867.000000
s hg38.chr21_GL383581v2_alt     80611 96 +    116689 caggcgtggtggctcacacctgtaatccctgcactttgggaagccgaggccagcggatcacgaggtcaggagattgagaccatcctggctaaaacg
s panTro4.chr21              19584730 96 +  32799110 caggcgtggtggctcacacctgtaatccctgcactttgggaagccgaggccagctgatcacgaggtcaggagattgagaccatcctggctaaaacg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489734 96 +  48394510 caggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggccagcggatcacaaggtcaggagattgagaccatcctggctaaaacg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013847 96 +  32716333 caggcgtggtggctcacacctgtaatcccagcactttgggaagccgaggccagctgatcacgaggtcaggagactgagaccatcctggctaaaacg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185171969 96 - 198365852 caggcgtggtggctcatgactataatcccaccactttgggaggctggggcaggtggatcacgaggtcaggagatcaagaccatcctggctaacatg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179014907 96 - 192294377 cgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaacccg
i macFas5.chr3              I 300 C 0
s papAnu2.chr3              167395114 96 - 180432695 caggcgtggtggctcatgcctataatcccaccactttgggaggctggggcaggtggatcatgaggtcaggagatcaagaccatcctggctaacatg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668219 96 -  90373283 caggcgtggtggctcatgcctataatcccaccactttgggaggctgaggcaggtggatcacgaggtcaggagatcaagaccatcctggctaacatg
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096195  0 +  39895921 C
e calJac3.chr21              37481580 25 +  50472720 I

a score=441865.000000
s hg38.chr21_GL383581v2_alt     80707 205 +    116689 atgaaaccccgtctctact---aaaaacacaaaaaattagctgggcgtggtggagggtgcctgtagtcccagcttctcgggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcgacagagtgagactccatctc-----------------------aa----------aaaaaaaaaaaaaaaaaCAA----C
s panTro4.chr21              19584826 209 +  32799110 atgaaaccccgtctctact---aaaaacacaaaaaattagctgggcgtggtggagggtgcctgtagtcccagcttctcgggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgatccgagatcgcaccactgcactccagcctgggtgacagagtgagactccatctc-----------------------aa----------aaaaaaaaaaaaaaaaaaaaaaaaC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34489830 219 +  48394510 atgaaacgccgtctccaat---aaaaacacaaaaaattagctgggcgtggtggagggcgcctgtagtcccagcttctcaggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagtgagactccgtctc-----------------------aaaaaataaaataaaataaaataaaaataaaaaaaaC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20013943 200 +  32716333 atgaaaccccatctctact---aaaaacac---aaattagctgggcgtggtggagggcgcctgtagtcccagcttctcaggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagccgaagtcgcgccactgcactccagcctgggtgacagagcaagactccgtctc-----------------------aa----------aaaaaaaaaaaaaaaaaa------c
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185172065 198 - 198365852 gtgaaaccccatctctacc---aaaaatacaaaaaattagctgggcgtggtggcaggcgcctgtagtcccaggtactcgggaggctgaggcaggagaatggcgtgaaccgggaaggcggagcttgcagtgagcagagatcgcgccactgcactccagcctgggcaactgagcgagactccgtct------------------------ca----------aaaaaaaaaacaaa----------C
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015003 225 - 192294377 gtgaaaccccgtctctagtaaaaaaaatacaaaaaaatagccgggcgaggtggcgagcgtctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatccggccactgcactccagcccgggcgacagagcaagactccgtctcaaaaaaaaaaaaaaaaacaaaaaca----------aaaaaaaaaacaaa----------C
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167395210 199 - 180432695 gtgaaaccccatctctccc---aaaaatacaaaaaattagctgggcgtggtggcaggcgcctgtagtcccagctattcgggaggctgaggcaggagaatagtgtgaaccgggaaggtggagcttgcagtgagcagagatcgtgccactgcactccagcctgggcgacagagcgagactccgtctc-----------------------aa----------aaaaaaaaaacaaa----------c
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668315 199 -  90373283 gtgaaaccccatctctacc---aaaaatacaaaaaattagctgggcgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatagcgtgaaccgggaaggcagagcttgcagtgagcagagatcgtgccactgcactccagcctgggcgacagagcgagactccgtctc-----------------------aa----------aaaaaaaaaacaaa----------C
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481605 156 +  50472720 ATGAAA------------T---AAAATTAT-----ACTggctgggcgcgatggctcacgtctgtaatcccagcactttgggaggccgaggcaggcggatcacg----------aggtcaa--------------gagatcgaga---------ccatcctagccaacatggtaaaaccccatctctatttat----------------aa----------aataacaaaaaAaa----------t
i calJac3.chr21             I 25 C 0
e mm10.chr16                 91588181 7392 +  98207768 I
e canFam3.chr31              28096195   0 +  39895921 C

a score=452308.000000
s hg38.chr21_GL383581v2_alt     80912 135 +    116689 TTTAAGTT-TAAAAA-GATTCCTTGTGAAA-------TAAAATTATATCAAAGTACAATCATCTGTTTATATTATCTACTTGAAACTTAC----CCTAGAACGacaaaaagattttcataa-agcaaagcttttaatggctaaaaccca
s panTro4.chr21              19585035 135 +  32799110 TTTAAGTT-TAAAAA-GATTCCTTGTGAAA-------TAAAATTATATCAAAGTACAATTATCTGTTTATATTATCTACCTGaaacttac----cctacaacgacaaaaagattttcataa-agcaaagcttttaatggctaaaaccca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34490049 135 +  48394510 TGTAAGTT-TAAAAA-GATTCCTTGTGAAA-------TAAAATTATATCAAAGTACAATCATCTGTTTATATTATCTACCTGaaacttac----cctacaacgacaaaaagattttcataa-agcaaagcttttaatggctaaaaccca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20014143 134 +  32716333 tttaagtt-taaaAA-GATTCCTTGTGAAA-------TTAAATTATATCAAAGTACAATCACCTGTTTATATTATCTACCTGAAACTTAC----CCTACAATGACAGaaagattttcataa-agcaaaga-ttaaatggctaaaaccca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185172263 136 - 198365852 TTTAAGTTATAAAAA-GATTCCTTGTGAAA-------TAAAATTATATCAAAGTACAATCATCTGTTTATATTatctacctgaaacatac----cctacaatgacaaaaagattttcataa-agcaaggcttttaatggctaaaaccca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015228 136 - 192294377 TTTAAGTTATAAAAA-GATTCCTTGTGAAA-------TAAAATTATATCAAAGTACAATCATCTGTTTATATTatctacctgaaacatac----cctacaatgacaaaaagattttcataa-agcaaggcttttaatggctaaaaccca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167395409 136 - 180432695 ttaaagttataaaaa-gattccttgtgaaa-------taaaattatatcaaagtACAATCATCTGTTTATATTATCTACCTGAAACTTAC----CCTACAATGACAAAAAGATTTTCATAA-AGCAATGCTTTTAATGGCTAAAACCCA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668514 136 -  90373283 TTTAAGTTATAAAAA-GATTCCTTGTGAAA-------TAAAATTATATCAAAGTACAATCATCTATTTATATTATCTACCTGAAACTTAC----CCTACAATGACAAaaagattttcataa-agcaaggcttttaatggctaaaaccca
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481761 122 +  50472720 ttt---tt-taaaaa-----------gaaa-------taaaattataCCAAAGTACAATCATCTGTTTATATCATCTACCTGAAACTTAT----CCTACAATGACAAaaagattttcatac-agcaaggcttttaatggctaaaattca
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28096195 149 +  39895921 TTTAAGTTATAAAAACAATTCCTGGTGCAAAAGGCACTCAAATTATACCAAAGAACAACAATCTGTTTACGTTATCTACCTGAAACTTATCCTACCTACAATGGCAAaaggattttcatggcaacgagacttttaacagctaaaatcca
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91588181 7392 +  98207768 I

a score=350247.000000
s hg38.chr21_GL383581v2_alt     81047 98 +    116689 gaaacagtcaaaatgtccatc---aataaggaaccaaaaaatgtatattagggtacatccaaacaacggtataccatgcaacattctgaaaatgaGGCAAG
s panTro4.chr21              19585170 98 +  32799110 gaaacagtcaaaatgtccatc---aataaggaaccaaaaaatgtatattagggtacatccaaacaacggtataccatgcaacattctgaaaatgaggcagg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34490184 98 +  48394510 gaaacagccaaaatgtccatc---gataaggaaccaaaaaatgtatattagggtacatccaaacaacggtataccatgcaacattctgaaaatgaggcagG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20014277 98 +  32716333 gaaacagccaaaatgtccatc---aataaggaaccaaaaaatgtatattacggtacacccaaacaacggtataccatgcaacattctgaaaatgaggcagg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185172399 98 - 198365852 gaaacagccaaaatgcccatc---aataaggaaccaaaaaatgtatattagggtacatccaaacaacagtataccccactacattttgagaatgaggcagg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015364 98 - 192294377 gaaacagccaaaatgcccatc---aataaggaaccaaaaaatgtatattagggtacatccaaacaacagtataccccactacattttgagaatgaggcagg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167395545 98 - 180432695 GAAACagccaaaatgcccatc---aataaggAACCAAAAAATGTATATTAGGGTACATCCAAACAACAGTATACCCCACTACATTTTGAGAATGAGGCAGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668650 98 -  90373283 gaaacagccaaaatgcccatc---aataaggaaccaaaaaatgtatattagggtacatccaaacaacagtataccccactacattttgagaatgaggcagg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481883 93 +  50472720 gaaataaccaaaatgtccatcaataataaggaaccaaaaaatatatattagggtacatccaaacaatggtataccatgcaacattttgaaaat--------
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91595573 86 +  98207768 GAAGCAACCAAAATGTCTATC---AGTAAGAGACCAAAAA---CACATTATTGTACATCCAAATAACAGCACACGGC------TTTTGAAatt---gtata
i mm10.chr16                I 7392 C 0
s canFam3.chr31              28096344 96 +  39895921 gaaacaacc-aaatgtccatc---agtacgggatcaacaaa-atacatgagagcacatgtaaataatggtataggatgaagcattctaaaaatgaggtaga
i canFam3.chr31             C 0 C 0

a score=778308.000000
s hg38.chr21_GL383581v2_alt     81145 309 +    116689 TTggctgggcaggatggctcacacctgtaatcccagcactttgagaggctgaggcaggtggatggcttgagttcaggaattcaagaccagcctgggcaatatgagaaacccgtctctacaaaaattacaaaaa----ttaggcatggtggcactcgcctatagtctcagcttctcaggaggctgaggtgggaggatcgtttgag-cccaaggctgcagcaagccgtgag----ggaaccactgcactccagcctgggcaacacagtgagacccggtctccaaaGTGAGGGGTGGGGTTGGGAGGAAATGAGGTAGGTC
s panTro4.chr21              19585268 309 +  32799110 tTggctgggcaggatggctcacacctgtaatcccagcactttgagaggctgaggcaggtggatggcttgagttcaggaattcaagaccagcctgggcaatatgagaaacccgtctctacaaaaattacaaaaa----ttaggcatggtagcactcgcctatagtctcagcttctcaggaggctgaggtgggaggatcgtttgag-cccaaggctgcagcaagccgtgag----ggaaccactgcactccagcctgggcaacacagtgagacccggtctccaaaGTGAGGGGTGGGGTTGGGAGGAAATGAGGTAGGTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34490282 307 +  48394510 CTggctgggcaggatggctcacacctgtaatcccagcactttgagaggctgaggcaggtggatggcttaagctcaggaatt-aagaccagcctgggcaatatgagaaacctgtctctacaaaaattacaaaaa----ttaggcatggtggcactcgcctatagtctcagcttctcaggaggctgaggtgggaggatcgtttgag-cctaaggctgcagtgagccgtgag----ggaaccactgcactccagcctggacaacacagtgaga-ccggtctccaaaGTGAGGGGTGGGATTGGGGGGAAACGAGGTAGGTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20014375 309 +  32716333 tTggctgggcaggatggctcacacctgtaatcccagcactttgagaggctgaggcaggtggatggcttgagctcaggaattcaagaccagcttgggcaatatgagaaacctgtctctacaaaaattacaaaaa----ttaggcgtggtggcacttgcctatagtctcagctactcaggatgctgaggtgggaggatcgtttgag-cccaaggctgcagtgagccgtgag----ggaaccactgcactccagcctgggcaacacagtgagacccagtctccaaaGTGAGGGGTGGGGTTGGGGGGAAATGAGGTAGGTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185172497 309 - 198365852 tTggctgggcaggatggctcacacctgtaatcccagcactctgagaggctgaggcaggtggatagcttgagattaggaattaaagaccagcctgggcaacatgaggaaccgatctctacaaaaattacaaaaa----tcaggcgtggcggcactcacctatagtctcagctactcgggaggctgaggtgggagaatcgtttgagccccaaggctgcagtgagcagtgag----ggaacca-tgcactctacccggggcaacacagtcagacccggtctccaaaGTGAGGGGTGGGGTTGCAGGGAAATGAGTTAGGTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015462 309 - 192294377 tTggctgggcaggatggctcacacctgtaatcccagcactctgagaggctgaggcaggtggatagcttgagctcaggaattgaagaccagcctgggcaacatgaggaacccatatctacaaaaattacaaaaa----tcaggcgtggtggcactcacctatagtctcagctactcgggaggctgaggtgggagaatcgtttgagccccaaggctgcagtgagcagtgag----ggaacca-tgcactctacccggggcaacacagtcagacccggtctccaaaGTGAGGGGTGGGGTTGCAGGGAAATGAGTTAGGTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167395643 310 - 180432695 TTGGCTAGGcaggatggctcacacctgtaatcccagcactctgagaggctgaggcaggtggatagcttgagctcaggaattgaagaccagcctgggcaacatgaggaacccatctctacaaaaattacaaaaa----tcaggtgtggtggcactcacctatagtctcagctactcgggaggctgaggtgggagaatcgtttgagccccaaggctgcagtgagtagtgag----ggaaccactgcactctacccggGGCAACACAGTCAGACCCAGTCTCCAAAGTGAGGGGTGGGGTTGCAGGGAAATGAGTTAGGTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31668748 310 -  90373283 tTggctgggcaggatggctcacacctgtaatcccagcactctgagaggctgaggcaggtggatagcttgagctcaggaattgaagaccagcctgggcaacatgaggaacccatctctacaaaaattacaaaaa----tcagacgtggtggcactcacctatagtctcagctactcgggaggctgaggtgggagaatcgtttgagccccaaggctgcagtgagcagtgag----ggaaccactgcactctacccggggcaacacagttagacccggtctccaaaGTGAGGGGTGGGGTTGCAGGGAAATGAGTTAGGTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37481976 223 +  50472720 --------------------------------------------gaGGCTGAGACAGGTGGCTGG--------------------------------AATTTGAgaaacacatctctacaaaaattacaaaaagtagttaggcacggtggcactcgcctatagttccagcta------------aggtgggagaatcgtttaagccccaaggctgcaatgagccatgag----ggatccactacactccagcctgggca--agagtgagaccctgtctccaaaGTAACAGGCTGGGGTAGGGGGGAATGA-CTAGGTC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91595659 226 +  98207768 tatgtgatcctgtgtggagtgcatctg-agtgcaggtgcccacagaggccaaagtcatgggattccctgg---------------------------agtgtgag-------------------tt-----------tcaggggagctgtgagtctgatgtggcttcag----tcaagaaactgaacttgggtcctctttcata----------gcagggagcactcaacctctgagccac--ctctccagcccTCTTAGCA------------ACttttaaaat------tttaattaaaaaaaaaaaaGATTAGTC
i mm10.chr16                C 0 C 0
e canFam3.chr31              28096440   0 +  39895921 C

a score=324106.000000
s hg38.chr21_GL383581v2_alt     81454 93 +    116689 TCCACGTGCTTATGAAGGAAATGTGTCCTTATATTATCA----TCAGTTGCCGAGCAATATTATAATATAATACCCTCCTAGGGAATGGAATTGAGG
s panTro4.chr21              19585577 93 +  32799110 TCCACGTGCTTATGAAGGAAATGTGTCCTTATATTATCA----TCAGTTGCCGAGCAATATTATAGTATAATACCCTCctagggaatggaattgagg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34490589 93 +  48394510 TCCACGTGCTTACGAAGGAAATGTGTCCTTATATTATCA----TCAGTTGCCGAGCAATATTATAGTATAATATCCTCCTAGGGAATGGAATTGAGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20014684 93 +  32716333 TCCACGTGCTTAAGAAGTGAATGTGTCCTTATATTATCA----TCAGTTGCCGAGTAATATTATAGTATAATACCCTCCTAGGGAATGGAATTGAGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185172806 93 - 198365852 TCTACGTGCTTAAGAAGGAAATGTGTCCTTATATTATCA----TCAGCTGCCGAGCAATATTATAGTATAATATCCTCCTAGGGAATTGAATTGAGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015771 93 - 192294377 TCTACATGCTTAAGAAGGAAATGTGTCCTTATATTATCA----TCAGCTGCCGAGCAATATTATAGTATAATATCCTCCTAGGGAATTGAATTGAGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167395953 93 - 180432695 TCTACGTGCTTAAGAAGGAAATGTGTCCTTATATTATCA----TCAGCTGCCGAGCAATATTATAGTATAATATCCTCCTAGGGAATTGAATTGAGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31669058 93 -  90373283 TCTACGTGCTTAAGAAGGAAATGTGTCCTTATATTATCA----TCAGCTGCCGAGCAATATTATAGTATAATATCCTCCTAGGGAATGGAATTGAGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37482199 93 +  50472720 TCTAAGTGCTTAACAAGGAAATGTCTCCTTATATTATCA----TCAGCTGCCAAGCAATACTGTAGTGTCATACCCTCCTGGGGAATGGAATTAAGA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91595885 84 +  98207768 TACATACATC---------AATGTGTAAATGTGTCATTA----TCTGTTGCCAAATAGCATTGTGTTATGATGGCCTCCTTAAGAGTAGAACTGGgg
i mm10.chr16                C 0 I 426
s canFam3.chr31              28096440 94 +  39895921 tccacataca-gatacggaaccatgtcctgatattattataagtcaaCTGCCCAACAG--CTATGGGATGGTCCCCTCCTAGGCAATGGATCTGAAG
i canFam3.chr31             C 0 C 0

a score=368150.000000
s hg38.chr21_GL383581v2_alt     81547 123 +    116689 ATGTAAAGAGTGAAC-------AAACAAGGAATTCTAACT-------TGACATACCT--CTGCGCTGTCTGAA--TTTTACTT-GATATTCTTCTGTCATGTTTAAATGTTTTAAACAACCTGA--ATGTTACTTTAATCA-TTT
s panTro4.chr21              19585670 123 +  32799110 atgtaaagagtgaac-------aaacaaggaatcctaact-------tgacatacct--ctgtgctgtctgaa--ttttACTT-GATATTCTTCTGTCATGTTTAAATGTTTTAAACAACCTGA--ATGTTACTTTAATCA-TTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34490682 111 +  48394510 ATGTAAAGAGTGAAC-------AAACAAGGAATCCTAACT-------TGACATACCT---TGCGCTGTCCGAA--TTTTACTT-GATATTCTTCT-----------ATGTTTTAAACAACCTGA--ATGTTACTTTAATCA-TTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20014777 123 +  32716333 ATGTAAAGAGTGAAC-------AAACAAGGAATCCTAACT-------TGACATACCT--CTGCGCTGTCTGAA--TTTTACTT-GATATTCTTCTGTCATGTTTAAATGTTTTAAACAACCTGA--ATGTTACTTTAATCA-TTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185172899 126 - 198365852 ATGTAAAGAGTGAAAAGTGAAGAAACAAGGAATCCTAACT-------TGACATACTT--CTGCGCT----GAA--TTTTACTT-GATATTCTTCTGTCATGTTTAAATGTTTTAAACAACCTGA--ATGTTACTTTAACCA-TTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015864 126 - 192294377 ATGTAAAGAGTGAAAAGTGAAGAAACAAGGAATCCTAACT-------TGACATACCT--CTGCGCT----GAA--TTTTACTT-GATATTCTTCTGTCATGTTTAAATGTTTTAAACAACCTGA--ATGTTACTTTAACCA-TTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167396046 126 - 180432695 ATGTAAAGAgtgaaaagtgaagaaacaagGAATCCTAACT-------TGACATACCT--CTGCGCT----GAA--TTTTACTT-GATATTCTTCTGtcatgtttaaatgttttaaacaacCTGA--ATGTTACTTTAacca-ttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31669151 126 -  90373283 ATGTAAAGAGTGAAAAGTGAAGAAACAAGGAATCCTAACT-------TGACATACCT--CTGCGCT----GAA--TTTTACTT-GATATTCTTCTGTCATGTTTAAATGTTTTAAACAACCTGA--ATGTTACTTTAACCA-TTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37482292 129 +  50472720 ATGTAAAGGGTGGAGAGTGAAGAAACAAGGAATCCTAACT-------AGATATACCT--CTGCGCTGTCTGAA--TTTTACTT-GATAGTCTTCTGTAATGTTTAAATGTTTTAAATAACCTAA----GTTACTTTAATCATTTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28096534 139 +  39895921 ATTTAAAGGATGGAAAGT----GAACAAGGAATTCCCACTTTTTACCTGATACACTTTGTTGTGCCGTTTGAACTTTTCACTTGGATATTCTTCTGTTATGTCAAAAAAAATT-AATAACCTAGATATATTACTGCTATCA-CTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91595969 426 +  98207768 I

a score=1600072.000000
s hg38.chr21_GL383581v2_alt     81670 607 +    116689  
s panTro4.chr21              19585793 604 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34490793 596 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20014900 600 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185173025 603 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179015990 603 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167396172 603 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31669277 603 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37482421 580 +  50472720  
i calJac3.chr21             C 0 I 19
e mm10.chr16                 91595969 426 +  98207768 I
e canFam3.chr31              28096673   0 +  39895921 C

a score=59334.000000
s hg38.chr21_GL383581v2_alt     82277 42 +    116689 taaataaaTTTAAAAATAATAATAATACACTTTAAAAggcca
s panTro4.chr21              19586397 42 +  32799110 taaataaatTTAAAAATAATAATAATACACTTTAAAAggcca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34491389 42 +  48394510 taaataaatTTAAAAATAATAATAATACACTTTAAAAggcca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20015500 42 +  32716333 taaataaaTTTAAAAACAATAATAATAAACTTTAAAAggcca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185173628 27 - 198365852 ca---------------aaTAATAATAAACTTTAAAAggcca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179016593 27 - 192294377 ca---------------aaTAATAATAAACTTTAAAAggcca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167396775 27 - 180432695 ca---------------aataataataaactttaaaaggcca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31669880 27 -  90373283 CA---------------AATAATAATAAACTTTAAAAggcca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91595969 426 +  98207768 I
e canFam3.chr31              28096673  0 +  39895921 C
e calJac3.chr21              37483001 19 +  50472720 I

a score=752521.000000
s hg38.chr21_GL383581v2_alt     82319 285 +    116689 ggcgcggt-gcccacacctgtaatcccagtactttcagagaccgaggcaagcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactctctctctactaagaatataaaaattagccaggcatggtggcaggcgcct---------------------gtgatcccagctactcgggaggc-tgaggctgtaaaatccctttaaccctagaggtgcaggctgcagtgagcagagatcgggccact--------------------------gtacttgtagcctggtcaacgagggagactctgtctc------------aaaaaaaac
s panTro4.chr21              19586439 285 +  32799110 ggcgcggt-gcccacacctgtaatcccagtactttcagagaccgaggcaagcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactctctctctactaagaatataaaaattagccaggcatggtggcaggcgcct---------------------gtgatcccagctactcgggaggc-tgaggctgtaaaatccctttaaccctagaggtgcaggctgaagtgagcagagatagggccact--------------------------gtacttgcagcctggtcaacgagggagactctgtctc------------aaaaaaaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34491431 285 +  48394510 ggcgcggt-ggtcacacctgtaatcccagtactttcagggaccgaggcgagcggatcacttgaggtcaggagttcaagaccagcctggccaacacggtgaaactctctctctactaagaatataaaaattagccaggcatggtggcaggcgcct---------------------gtgatcccagctactcgggaggc-tgaggctgtaaaatccctttaaccctagaggtgcaggctgcagtgagcagagatcgggccact--------------------------gtacttgcagcctggtcaacgagggagaccctgtctc------------aaaaaaaac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20015542 306 +  32716333 ggcgcggt-gcccacgcctgtaatcccagtactttcagagaccgaggcgagcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactctctctctactaagaatataaaaattagccaggcatggtggcaggcgcctgtgatcccagctactctgtgagtgatcccagctactcgggaagc-tgagactataaaatccctttaaccctagaggtgcaggctgcagtgagcagagatcgggccact--------------------------gtacttgcagcctggtcaacgagggagaccctgtctc------------aaaaaaaac
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185173655 299 - 198365852 ggcgcggt-gcccacgcctgtaatc----------------ccgaggcgagcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactccctcccttctaagagtataaaaattagccggacatgggggcaggcgcct---------------------gtgatcccagctagtcgggaggc-tgagactgtaaaatccctttaaccctagaggcatgggttgcagtgagcaaagatcgcgccactgcactccagcctaggcgacagcaacagtacttgcagcctggtcaacgagtgagaccctgtctcc--------aaaaaaaaaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179016620 317 - 192294377 ggcgcggt-gcccacgcctgtaatcccagcatgtggagagaccgaggcgagcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactccctcccttctaagagtataaaaattagccggacatgggggcaggcgcct---------------------gtgatcccagctagtcgggaggc-tgagactgtaaaatccctttaaccctagaggcatgggttgcagtgagcaaagatcgcgccactgcactccagcctaggcgacagcaacagtacttgcagcctggtcaacgagtgagaccctgtctcc------aaaaaaaaaaaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167396802 312 - 180432695 ggcgcggt-gcccacgcctgtaatcccagcatttggagagaccgaggcgagcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactccctcccTTCTaagagtataaaaattagccggacatgggggcaggcgcct---------------------gtgatcccagctagtcgggaggcttgAGACTGTAAAATCCCTTTAACCCTAGAGGcatgggttgcagtgagcaaagatcgcgccactgcactccagcctaggcgacagcgACAGTACTTGCAGCCTGGTCaacgagtgagaccctgtctc------------aaaaaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31669907 323 -  90373283 ggcgcggt-gcccacgcctgtaatcccagcatttggagagaccgaggcgagcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaactccctcccttctaagagtataaaaattagccggacatgggggcaggggcct---------------------gtgatcccagctagtcgggaggc-tgagactgtaaaatccctttaaccctagaggcatgggttgcagtgagcaaagatcgcgccactgcactccagcctaggcgacagCGACAGTACTTGAAGCCTGGTCAACGAGTGAGACCCTGTCTCaaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37483020 253 +  50472720 ggtacagtggctcaggcctgtaatccaagcactttgggtggccgaggcaggcatatcgcttgaggtcaggagttcaagaccagcctggtcaacatagcaaaatcccctctctactaaaaatataaaaattagccagacat----------------------------------------------------ggaggc-tgacgctgtaaaatccctttaatcctgaaggcggaggttgcagtaagccgagatcgggccact--------------------------gtac-tgcagcctggttgac-agtgagaccctgtctg------------gaaaaaaaT
i calJac3.chr21             I 19 C 0
e mm10.chr16                 91595969 426 +  98207768 I
e canFam3.chr31              28096673   0 +  39895921 C

a score=4166.000000
s hg38.chr21_GL383581v2_alt     82604 2 +    116689 ag
s panTro4.chr21              19586724 2 +  32799110 ag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34491716 2 +  48394510 ag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20015848 2 +  32716333 ag
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185173954 2 - 198365852 aa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179016937 2 - 192294377 aa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167397114 2 - 180432695 aa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31670230 2 -  90373283 aa
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28096673 2 +  39895921 AA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91595969 426 +  98207768 I
e calJac3.chr21              37483273 0 +  50472720 C

a score=1057004.000000
s hg38.chr21_GL383581v2_alt     82606 318 +    116689 aaaaggaaaaTGAGGATAAAATACGATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAGGCTGCTGTAACCCTAGTTGACAGAGAGGAGGGATTGGG-----GTGGTGAGTGGGAAGGCTGTGTCTCCGGAAGAAGAAata--tacgtcc-----------------------------------------------ccacctcactctaattaaacctgcttttccagcgcgataaatattcaagataaCTTTTGGTTTGCATTTCAATAAC---AAAGTCTTGCACCACTATCTTCAGTTTAAAAAAAAA-----GTTTAA--TGTTT-GC----TCT-ACGTTTGAAA--TGCATGC
s panTro4.chr21              19586726 320 +  32799110 aaaagaaaaaTGAGGATAAAATACGATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAGGCTGCTGTAACCCTAGATGACAGAGAGGAGGGATTGGG-----ATGGTGAGTGGGAAGGCTGTGTCTCCGGAAGAAGAAata--tacgtcc-----------------------------------------------ccacctcactctaattaaacctgcttttccagcgcgataaatattcaagataaCTTTTGGTTTGCATTTCAATAAC---AAAGTCTTGCATCACTATCTTCAGTTTAAAAAAAAA---ATGTTTAA--TGTTT-GC----TCT-ACGTTTGAAA--TGCATGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34491718 318 +  48394510 aaaaggaaaaTGAGGATAAAATACGATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAGGCTGCTGTAACCCTAGTTGACAGAGAGGAGGGATTGGG-----GTGGTGAGTGGGAAGGCTATGTCTCTGGAAGAAGAAata--tacgtcc-----------------------------------------------ccacctcactctaattaaacctgcttttccagcacgataaatattcaagataaCTTTTGGTTTGCATTTCAAGAAC---AAAGTCTTGCACCACTATCCTCAGTTTAAAAAAAAA-----GTTTAA--TGTTT-GC----TCT-ACGTTTGAAA--TGCATGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20015850 322 +  32716333 aaaaggaaaaTGAGGATAAAATACGATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAGGCTGCTGTAACTCTAGTTGACAGAGAGGAGGGACTGGT-----GTGGTGAGTGGGGAGGCTGTGTCTCTGGAAGAAGAAata--tacgtcc-----------------------------------------------ccacctcactctaattaaacctgcttttccagcgcgataaatattcaagataaCTTTTGGTTTGCATTTCAAGAAC---AAAGTCTTGCACCACTATCCTCAGTTAAAAAAAAAAAAAACGTTTAA--TGTTT-GC----TCT-ACGTTTG-AA--TGCATGC
i nomLeu3.chr25             C 0 M 1263
s rheMac3.chr3              185173956 319 - 198365852 aaaaggaaaaTGAGGATAAAATAAGATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAAGCCGCCATAACCCTAGTTGACAGAGAGGAGGGATTGGG-----GTGGCGAGTGGGGAGGCTGTGTCTCTGGAAGAAGAAATA--TACGTCC-----------------------------------------------CCACCTCAGTCTGATTAAACCTGCTTTTCCAGCGCGATCAATATTCAAGGTAACTTTTGGTTTGCCTTTCAAGAAA---GAAGTCTTGCACCACTATCCTCAGTTTAAAAAAAAA----TGTTTAA--TGTTT-GC----TCT-ACGTTTGAAA--TGCATGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179016939 319 - 192294377 aaaaggaaaaTGAGGATAAAATAAGATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAAGCCGCCATAACCCTAGTTGACAGAGAGGAGGGATTGGG-----GTGGCGAGTGGGGAGGCTGTGTCTCTGGAAGAAGAAATA--TACGTCC-----------------------------------------------CCACCTCAGTCTGATTAAACCTGCTTTTCCAGCGCGATCAATATTCAAGGTAACTTTTGGTTTGCCTTTCAAGAAA---GAAGTCTTGCACCACTATCCTCAGTTTAAAAAAAAA----TGTTTAA--TGTTT-GC----TCT-ACGTTTGAAA--TGCATGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167397116 319 - 180432695 aaaaggaaaatgaggataaaataagataaattcttTA--CCTTGGACCCCAGAAGTgaattcagaattcagaa---aaGACTAGCCAGTGT----------AAAGCCGCCATAACCCTAGTTGACAGAGAGGAGGGATTGGG-----GTGGCGAGTGGTGAGGCTGTGTCTCTGGAAGAAGAAATA--TACGTCC-----------------------------------------------CCACCTCAGTCTGATTAAACCTGCTTTTCCAGCGCGATCAATATTCAAGATAACTTTTGGTTTGCCTTTCAAGAAA---GAAGTCTTGCACCACTatcctcagtttaaaaaaaaa----tgtttaa--tgttt-gc----tCT-ACGTTTGAAA--TGCATGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31670232 314 -  90373283 aaaaGGAAAATGAGGATAAA-----ATAAATTCTTTA--CCTTGGCCCCCAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGAGT----------AAGGCCGCCATAACCCTAGTTGACAGAGAGGAGGGATTGGG-----GTGGCGAGTGGGAAGGCTGTGTCTCTGGAAGAAGAAata--tacgtcc-----------------------------------------------ccacctcagtctgattaaacctgcttttccagcgcgatcaatattcaagataaCTTTTGGTTTGCCTTTCAAGAAA---GAAGTCTTGCACCACTATCCTCAGTTTAAAAAAAAA----TGTTTAA--TGTTT-GC----TCT-ACGTTTGAAA--TGCATGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37483273 351 +  50472720 ----------------TATAATAAGATAATTTCTTTA--CCTTGGCCCCTAGAAGTGAATTCAGAATTCAGAA---AAGACTAGCCAGTGT----------AAGGCTGCTGTAATCCTAGTTGAC--AAAGGAGGGACTGG------GTGATGAGTGGGGAGGCTGTGTCTCTGGAAGAAGAAATA--TACGTCCTCACCTCACTCTAATTAATCCTGCTTTTCTGGTGACATCAGCAGTCCTCACCTCACTCTAATTAAACCTGATTTTCCAACGTGATCAATATTTAAGATAACTTTTGGTTTTCATTTCAAGAAC---AAAGTCTGGCACCACTATATTCAGTTAAAAAAAAAA----AGTTTAA--GGTTC-GCTCTATCT-ATGTCTGAAA--CGTATGC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91596395 327 +  98207768 AAAAGACACATAAGGACTAAGCAAGATTGATTCTTTAATCAATTGACCCCAGTAGTGAATTTAGAAAACCAAAACCAAAACCAAACAACGCAATAGCGTTGAAGGCTGCTGT----CTAGCTGAT--AGAGGAAGAATGGGG-----AGGATCA-----AAGGGTGTGTCTCCTGAAGAGGAAAAAActacatcc-----------------------------------------------tcaccccgttccgattaaacctgcttttcttgaagcatcgctatgcaaattaaCCTCTGGGTTTCATTTTTAGGATCAGGAAGTCTTTGAACACTATGCTCGTTT-------AAG----TGTTTAAATTGCTTGGC----TCTGGTTTTTGGAAGCCGCACAC
i mm10.chr16                I 426 C 0
s canFam3.chr31              28096675 287 +  39895921 AAGTAGCAAGTAAGGATAAA-----------CTTTTA--CCTTGGACTCCAGAAGTGAGTTC---ATTAAAGA---CAGA------GGGGG----------AAGGTTCCGGTAATCCCAGTGGGCAGAGGATGGGGGCCGGGCAGGCGGGGCGGGGCAGGCGGGCGTGTCTCCGGAAGAGGAAAct--------c-----------------------------------------------tc-----------attaaacctgcttttcctgcagcatcagtattggagataaCTTTTGATTTTCGGTTTAAGAGCCG-AGAGTCTTGCAACACTATTATTACCGTAAAA--AAA----TGTTTAA--AGTTT-GT----TCT-ACGTTTGACA--CCTAAGA
i canFam3.chr31             C 0 C 0

a score=153662.000000
s hg38.chr21_GL383581v2_alt     82924  80 +    116689 AGGTTTAA--------AAGAC--------------AAGAAAC--AAAATGATG------AAAAAGTGTGACCGGCCTGAGAGTTCAGAGCCTCTG-AAGTGTCAAG-------------------------------------------------------------------------------------GGATC
s panTro4.chr21              19587046  80 +  32799110 AGGTTTAA--------AAGAC--------------AAGAAAC--AAAATGATG------AAAAAGTGTGACGGGCCTGAGAGTTCAGAGCCTCTG-AAGTGTCAAG-------------------------------------------------------------------------------------GGATC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34492036  88 +  48394510 AGGTTTAAAATACGAGAAGAC--------------AAGAAAC--AAAATGATG------AAAAAGTGTGACCGGCCTGAGAGTTCAGAGCCTCTG-AAGTGTCAAG-------------------------------------------------------------------------------------GGATC
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185174275  84 - 198365852 AGGTTTAA--------AAGACG-----------AGAAGAGAC--AAAATGATG------AAAAAGTGTGACCGGCCTGAGAGTTCAGAGCCTCTGGAAGTGTCAAG-------------------------------------------------------------------------------------GGATC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179017258  84 - 192294377 AGGTTTAA--------AAGACG-----------AGAAGAGAC--AAAATGATG------AAAAAGTGTGACCGGCCTGAGAGTTCAGAGCCTCTGGAAGTGTCAAG-------------------------------------------------------------------------------------GGATC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167397435  84 - 180432695 AGGTTTAA--------AAGACG-----------AGAAGAGAC--AAAATGATG------AAAAAGTGTGACCGGCCTGAGAGTTCAGTGCCTCTGAAAGTGTCAAG-------------------------------------------------------------------------------------GGATC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31670546  84 -  90373283 AAGTTTAA--------AAGACG-----------AGAAGAGAC--AAAAGGATG------AAAAAGTGTGACCGGCCCGACAGTTCAGAGCCTCTGGAAGTGTCAAG-------------------------------------------------------------------------------------GGATC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37483624  89 +  50472720 AGGTTTAA--------AAGAC--------------AAAAGGC--AAAATGATGATGAAAAAGAAGTGTGACCGCCGTGAGAGTTCAGA--CTCTGGAAGTGTCAAGACA--------------------------------------------------------------------------------T-GTATG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91596722  77 +  98207768 AGGTAGAA--------AAGAC------------------------AAACGAGA------AAGGAGGATGAGAAGCCTGGGAA-TAAGCGCCCCTGGAATTATCTAGAAA--------------------------------------------------------------------------------TGGGATT
i mm10.chr16                C 0 C 0
s canFam3.chr31              28096962 184 +  39895921 GGATTTGA--------AACACGACAGAGGACAAATAAGAGACTTAAGAGGATG---GACAAGAAGTGTGACCAGCCTGGGAG-TAAGAGCCTTGGGAATTGTTAAGAAAAGGGAAAAATCACTGGggggcacctgcgtggctcagtggttgagcgtctgcctttggctcaggtcgtgatcccggggtcctgggatc
i canFam3.chr31             C 0 I 116
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=207207.000000
s hg38.chr21_GL383581v2_alt     83004 90 +    116689 CACAGTGCAGGTAGGATGAAGAGTCTGAGAAGGGAGATGGGATCCTCCGAAAAG-AGAAAATCGGGTCTTACAGCGCGATGTAAGACGATG---
s panTro4.chr21              19587126 90 +  32799110 CACAGTGCAGGTAGGATGAAGAGTCTGAGAAGGGAGATGGGATCCTCCGAAAAG-AGAAAATCGGGTCTTACAGCGCGATGTAAGACGATG---
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34492124 83 +  48394510 CACAGTGCAGGTAGGATAAAGAGTCTGAGAGGGGAGATGGGATCCTCCGAAAAG-AGAAAATCGGGTCTTACAGCGC-------GACGATG---
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185174359 83 - 198365852 CACAGTGCAGGTAGGATGAAGAGTCTGAGAGGGGAGGTGGGATCCTCCGAAAAG-AGAAAGTCTGGTCTTGGAGCGC-------GACGATG---
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179017342 83 - 192294377 CACAGTGCAGGTAGGATGAAGAGTCTGAGAGGGGAGGTGGGATCCTCCGAAAAG-AGAAAGTCTGGTCTTGGAGCGC-------GACGATG---
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167397519 83 - 180432695 CACAGTGCAGGTAGGATGAAGAGTCTGAGAGGGGAGGTGGGATCCTCCGAAAAG-AGAAAGTCTGGTCTTAGAGCGC-------GACGATG---
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31670630 83 -  90373283 CACAGTGCAGGTAGGATGAAGAGTCTGAGAGGGGAGGTGGGATCCTCCGAAAAG-AGAAAGTCTGGTCTTGGAGCGC-------GACGATG---
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37483713 79 +  50472720 TACAGTGCAGGTAGGGTGAAGAGCCTGAGAGAGGAGGTGGGACCATCCGAAAAG-AGAAA----GGTCTTCCAGCGC-------GACGATG---
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91596799 76 +  98207768 TGTGGTACAAATAGGGTGAAGAGTTGGAGCGCGAA----GGATGCACGGGGGGGTAGGGGGGTGGATGTTGTT-----------GAGGGTG---
i mm10.chr16                C 0 C 0
s canFam3.chr31              28097262 80 +  39895921 CACGGTACCGGT-GGACGAAGAGTTTGAGAGAAGAGGTGGGATACTCCA------AGAAATTAATGCCTTTGGGAGG-------CATGATGGTG
i canFam3.chr31             I 116 I 56
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=128188.000000
s hg38.chr21_GL383581v2_alt     83094 58 +    116689 CGGATGCCACTTCCCTCCCACCCCGTCCCGTCCGAGGCCTCCGCCCCC-TGCCCCTCCG
s panTro4.chr21              19587216 58 +  32799110 CGGATGCCACTTCCCTCCCACCCCGTCCCGTCCGAGGCCTCCGCCCCC-TGCCCCTCCG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34492207 58 +  48394510 CGGATGCCACTTCCCTCCCACCCCGTCCCGTCCGAGGCCTCCGCCCCC-TGCCCCTCCG
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185174442 58 - 198365852 CAGATGCCACTTCCCTCCCATCCCGTCCCATCAGAGGCCTCCACTCCC-TGCCCCTCCG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179017425 58 - 192294377 CAGATGCCACTTCCCTCCCATCCCGTCCCATCAGAGGCCTCCACTCCC-TGCCCCTCCG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167397602 58 - 180432695 CAGATGCCACTTCCCTCCCATCCCGTCCCATCAGAGGCCTCCACTCCC-TGCCCCTCCG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31670713 58 -  90373283 CAGATGCCACTTCCCTCCCATCCCGTCCCATCAGAGGCCTCCACTCCC-TGCCCCTCCG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37483792 58 +  50472720 CCGATCCCACTTCCTTCTCACCCCGTCGGGTTCCAGGCCTCCGCCCCC-GGCCCCTCCG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91596875 43 +  98207768 AGCAT--------------ATCTACTCCAGCGAGAGGTTTGAATTCCCACGCCCCTC--
i mm10.chr16                C 0 C 0
e canFam3.chr31              28097342 56 +  39895921 I
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=1478072.000000
s hg38.chr21_GL383581v2_alt     83152 588 +    116689  
s panTro4.chr21              19587274 588 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34492265 588 +  48394510  
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185174500 593 - 198365852  
i rheMac3.chr3              C 0 M 439
s macFas5.chr3              179017483 593 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167397660 593 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31670771 593 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37483850 586 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91596918 501 +  98207768  
i mm10.chr16                C 0 I 1
s canFam3.chr31              28097398 522 +  39895921  
i canFam3.chr31             I 56 C 0
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=926174.000000
s hg38.chr21_GL383581v2_alt     83740 461 +    116689 GGTCGGCCCGAAGGGACGCGGGCAGGGGCAAGAAGGGGCGGCGGGGGCTCCGCGGGCCCGAGTCTGCAGGC----CGGCGCCGAACGCAGGGAAAACCCGGCTGGAC-GGC-------CCCACAGCCCCCAGAAGGCCGGGCCGGACAGGGCCCGACGAGGGAGCCTCCTTACGCGCGGGCGGCGGGCGCGAGCCCTCTACGGTTGCCTGGCGCCG-GAGACCCACAGACAGGACTCACCCAG-CTTCCTCAAACGCCCACGCCGACTTCAGGCGCGCGCGCAGGAAGGAGACTGCTGCGCCACAACCCTGCCGGCGTCCCGCGGCTCCA------CCTCAGC-CCCGGGAGCCCGGAGCTGGGAGCAGACGCGAGGATA-GAGCGCCGGTGAGGC-GGGGCGAGGCGCCGTGTGCACCGCAGCGACCAATCGGAGCGCAGCAAGTggccggccgggggcggggcgggacgcgagggggcgggg
s panTro4.chr21              19587862 467 +  32799110 GGTCGGCCCGAAGGGACGCGGGCAGGGGCAAGAAGGGGCGGCGGGGGCTCCGCGGGCCCGAGTCTGCAGGC----CGGCACCGAACGCAGGGAAAACCCGGCTGGAC-GGC-------CCCACAGCCCTCAGAAGGCCGGGCCGGACAGGGCCCGACGAGGGCGCCTCCTTACGCGCGGGCGGCGGGCGCGAGCCCTCTACGGTTGCCTGGCGCCG-GAGACCCACAGACAGGACTCACCCAG-CTTCCTCAAACGCCCACGCCGACTTTAGGCGCGCGCGCAGGAAGGAGACTGCTGCGCCACAACCCTGCCGGCGTCCCGCGGCTCCACCTCAGCCTCAGC-CCCGGGAGCCCGGAGCTGGAAGCCGACGCGAGGATA-GAGCGCCGGTGAGGC-GGGGCGAGGCGCCGTGTGCACCGCAGCGACCAATCGGAGCGCAGCAAGTGGCCGGCCGggggcggggcgggacgcgagggggcgggg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34492853 448 +  48394510 GGTCGGCCCGAAGGGGCGCGGGCAGGAGCAAGAAGGGGCGGCGGGGGCTCCGCGGGCCCGAGTCTGCAGGC----CGGTGCCGAGCGCAGGGAAAACCCGGCTGGGC-GGCGCCACAGCCCCCAGCCCCCAGAAGGCCGGGCCGGACAGGGCCCGACGAGGGCGCCTCCTTACGCGCGGGCGGCGGGCGCGAGCCCTCTAGGGTTGCCTGGCGCCG-GAGACCCACAGACAGGACTCACCCAG-CTTCCTCAAATGCCCACGCCGACTTCAGGCGCGCACGCAGGAAGGAGACTGCTGCGCCACAGCCCTGCCGGCGTCCCCCGGCTCCA------CCTCAGC-CCCGGGAGCCGGGAGCCGGAGGCCGGCGCGAGGATA-GAGCGCCGGTGAGGC-GGGGCGAGGCGCCGTGTGCACCGCAGCGACCAATCGGAGCGCAGCAAGTGGCCGGCC--------------------GGGGGCGGGG
i ponAbe2.chr21             C 0 C 0
s macFas5.chr3              179018076 456 - 192294377 GGCCGGCCCGAAGGGAAGCGGGTAGGGGCAAGAAGGGGCGGCGGGGGTTCCGCGGGCCCGAGTCTGCAGGC----CGGCGCCGAGCACAGGGAAAACCTGGCTGGGC-GGC-------GCCACAGCCCCCCGAAGGCCGGGTC-----GGGCCCGACTAGGGCGCCTCCTTACGCGCGGGCGGCGGGCGCGAACCCCCTAGGGTTGCCTGGCGCCG-GAGACCCGCAGACAGGACTCACCCAG-CTTCCTCAAACGCTCACGCCGACTTCAGGCGCGCGCGCAGAAAGGACACTGCTGCGCCACAGCCCGGCCGGCGTCCACCGGCTCCA------CCTCAGC-CCCGGGAGCCGGGAGCTGTAGGCCGCCGCGAGGCTA-GGGCGCCCCTGAGGC-GGGGCGAGGCGCCGTGCGCACTGCAGCGACCAATCGGAGCGCAGCAAGTggccggcggggggcggggcgggacgcgagggggcgggg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167398253 456 - 180432695 CGCCGGCCCGAAGGGAAGCGGGCAGGGGCAAGAAGGGGCGGCGGGGGTTCCGCGGGCCCGAGTCTGCAGGC----CGGCGCCGAGCGCAGGGAAAACCTGGCTGGGC-GGC-------GCCACAGCCCCCCGAAGGCTGGGTC-----GGGCCCGACTAGGGCGCCTCCTTACGCGCGGGCGGCGGGCGCGAACCCCCTAGGGTTGCCTGGCGCCG-GAGACCCGCAGACAGGACTCACCCAG-CTTCCTCAAACGCTCACGCCGACTTCAGGCGCGCGCGCAGAAAGGACACTGCTGCGCCACAGCCCGGCCGCCGTCCACCGGCTCCA------CCTCAGC-CCCGACAGCCGGGAGCTGGAGGCCGGCGCGAGGCTA-GGGCGCCCGTGAGGC-GGGGCGAGGCGCCGTGCGCTCTGCAGCGACCAATCGGAGCGCAGCAAGTGGCcggcggggggcggggcgggacgcgaaggggcgggg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31671364 456 -  90373283 GGTCGGCCCGAAGGGAAGCGGGCAGGGGCAAGAAGGGGCGGCGGGGGTTCCGCGGGCCCGAGTCTGCAGGC----CGGCGCCGAGCGCAGGGAAAACCTGGCTGGGC-GGC-------GCCACAGCCCCCCGAAGGCCGGGTC-----GGGCCCGACTAGGGCGCCTCCTTACGCGCGGGCGGCGGGCGCAAACCCCCTAGGGTTGCCTGGCGCCG-GAGACCCGCAGACAGGACTCACCCAG-CTTCCTCAAACGCTCACGCCGACTTCAGGCGCGCGCGCAGAAAGGACACTGCTGCGCCACAGCCCGGCCGGCGTCCACCGGCTCCA------CCTCAGC-CCCGGGAGCCGGGAGCTGGAGGCCGGCGCGAGGCTA-GGGCGCCCGTGAGGC-GGGGCGAAGCGCCGTGCGCACCGCAGCGACCAATCGGAGCGCAGCAAGTggccggccgggggcggggcgggacgcgagggggcgggg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37484436 431 +  50472720 TGTCGGCCCGAGAGGACGCGGGTAA----------------------------GGGCCGGAGTCTGCAGGC----AGGCGCCG-GCGCAAGGAAAACCCGGCTGGGC-GGC-------GCCACAGCCCC--GAAGGCCGGGCCGAATAGAGCCCGACGACGGCGCCTCCTTACGTGCAGGCGGCGGGCGCGAGCCCCCTCGCGTCGCCCGGCGCCG-GAGACCCGCCGACAGGACTCACCCAGCCTTCCTCAAACGCCCACGCCGACTTCAGGCGCGCGCGCAGGAAGGCGACTGCTGCGCCACAGCCTGGCCGGCGTCCTGCCGCTCCA------CCTCAGC-CCCGGGAGCCGGGAGCTGGAAGCCGGCGTTAGGCGA-GGGCGCCGGTGAGGC-GGAGCCAGGAGCCGTGCGCACCGTAGCGACCAATCGGAGCGCAGCAAGTGTCCAGCCGgggacggggcggggcacgaggaggcgggg
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91597420 393 +  98207768 GGGCG--CCGAGAGGAcgcgggcgcaggcc--------------gggccccgccggtc---gcccgcgcgcTCCTTGGCACCG-ACAC---------------GGGC-GGC-------GCCACAGAACCTC--Aggccgcgcc-----gggcc-------ggcg---cccTGCGTTCGATCGGCAGA-----------------TCACAGAAACCC-GAGACCTGCCAACCGCACTCACCCGG-CTACCTGCGAAGTCTACACCGAGCCCAGGCAGG--AGCAGGGACGTCGAGGGCGCGCGTCTGTCCGGGAAGCAGCGGCCCGATCAA------CCTCAG--TCCGGGAgccgggggccggcggcgggcgggaggcca-gggcgccggtggggcgggggcgaggcgccgTGCGCACCGCAGGAACCAATGGGATTGCAGCAAGTGGCCTGC-GTGGGCGGGGCATAACCCCTGGAGGCGGGA
i mm10.chr16                I 1 I 3
s canFam3.chr31              28097920 384 +  39895921 ----------ggggggcgcggg---gggcgag-gggggcggcggagg-tccgcgggcccga-tccgccggg----cggcgccgggcgc-ggcacagggaggccgggcgggc-------gccgccgcaccgcgcaggcccggcc------ggcc----gggggcgcctctccgcgcgcggacgacgggcgcgacccccc--------ccgcgcgccgcgagaccggcccac-gcactcacctgg-ccgccgc-gacgcccacgccgcccccgagcgcgcgt------------ccgccgcgcc-------------------------cca------cctcggtgcccgggagccgggagcggacggcgcgcgcgaggcgaggggcgcc-----ggc-ggggcgcggcgccgTGCGCACCGCGGCGACCAATCGGCACGCAGCAAGTGGCCGA--Gggggcggggcggggcgccagggggcgggg
i canFam3.chr31             C 0 C 0
e rheMac3.chr3              185175093 439 - 198365852 M
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=111172.000000
s hg38.chr21_GL383581v2_alt     84201 42 +    116689 agagggcgttggctgggcgcagcgggac-gCCGGGCGCTCCTC
s panTro4.chr21              19588329 42 +  32799110 agagggcgttggctgggcgcagcgggac-gCCGGGAGCTCCTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34493301 42 +  48394510 AGAGGGCGTTGGCTGGGCGCAGCGGGAC-GCCGGGCGCTCCTC
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185175532 42 - 198365852 AGAGGGCGTTGGCTGGGCGCAGCTGGAC-GCCGGGCGCTGCTC
i rheMac3.chr3              M 439 I 1
s macFas5.chr3              179018532 42 - 192294377 agagggcgttggctgggcgCAGCTGGAC-GCCGGGCGCTGCTC
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167398709 42 - 180432695 agagggcgttggctgggcgCAGCTGGAC-GCCGGGCGCTGCTC
i papAnu2.chr3              C 0 I 158
s chlSab2.chr2               31671820 42 -  90373283 agagggcgttggctgggcgCAGCTGGAC-GCCGGGCGCTGCTC
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37484867 42 +  50472720 agagggcgttggctgggcgcggcggggc-TCCGGGCGCTCCTC
i calJac3.chr21             C 0 I 1
s mm10.chr16                 91597816 41 +  98207768 GGACCTCAGAGGCGGAACGGGGCTGGAC--CCGTGCGCTCTGC
i mm10.chr16                I 3 I 1
s canFam3.chr31              28098304 41 +  39895921 -cgcggcgccag-ggggcggggcgaggcTTCCGGGAgctgccg
i canFam3.chr31             C 0 C 0
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=361939.000000
s hg38.chr21_GL383581v2_alt     84243 165 +    116689 GCGACCAATCGGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGAG-CTCCGAGGGACGGGGTGG-----GCTGCTCTGCAGGCCTCCCGGAGCCGGAGTTCAGACCCAGCTATCTACGGTTCCGGGCAG-AGCGGGACGGGCCTCTCCTGTCCCCTGCCGGTGGGCGGCCG
s panTro4.chr21              19588371 165 +  32799110 GCGACCAATCGGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGAG-CTCCGAGGGACTGGGTGG-----GCTGCTCTGCGGGCCTCCCGGAGCCGGAGTCCAGACCCAGCTATCTACGGTTCCGGACAG-AGCGGGACGGGCCTCTCCTGTCCCCTGCCGGTGGGCGGCCG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34493343 165 +  48394510 GCGACCAATCGGCGTGCAGCAAGTGGCCCGCCGAGGGCAGGGAGAG-CTCCGAGGGGCGGGGTGG-----GCTGCTCTGCGGGCCTCCCGGAGCCGGGGTCCAGACCCAGCTATCTACGGTTCGGGACAG-AGTGGGACGGGCCTCTCCTGTCCCCTGCCGGTGGGCGGCCG
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185175575 170 - 198365852 GCGACCAATCCGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGAG-CTCCCAGCCGTGGGGTGGGGACCGCTGCTCTGCTGGGCTCCCGGAGCCGGGGTCCAGACCCAACTACCTACGGTTGGGGACAG-AGTAAGACAGGCGTCTCCTATCCCCTGCGGGTGGGCGACCG
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              179018575 170 - 192294377 GCGACCAATCCGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGAG-CTCCCAGCGGTGGGGTGGGGACCGCTGCTCTGCTGGGCTCCCGGAGCCGGGGTCCAGACCCAACTACCTACGGTTGGGGACAG-AGTAAGACAGGCGTCTCCTATCCCCTGCGGGTGGGCGACCG
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167398909 170 - 180432695 GCGACCAATCCGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGAG-CTCCGAGCGGTGGGGTGGGGACCGCTGCTCTGCTGGCCTCCCGGAGCCGGGGTCCAGACCCAACTACCTACGGTTGGGGACAG-AGTAAGACAGGCGTCTCCTATCCCCTGCGGGTGGGCGACCG
i papAnu2.chr3              I 158 C 0
s chlSab2.chr2               31671863 170 -  90373283 GCGACCAATCCGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGAG-CTCCGAGCGGTGGGGTGGGGACCGCTGCTCTGCTGGCCTCCCGGAGCCGGGGTCCAGACCCAACTACCTACGGTTCGGGACAG-AGTAAGACAGGCGTCTCCTGTCCCCTGCGGGTGGGCGACCG
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37484910 170 +  50472720 GCGACCAATCAGCGTGCAGCAAGTGGCCGGCCGGGGGCAGGGCGGG-CTCCGAGGGGCGGGGTGGGGACCGCTCCTCTGCGGGCCTCCTGGAGCCGGGGTCCAGACCCAGCTACCTACGGTTCGGAGCAG-GATAAGACAAGTCCCTCTTGCCCCCCGCGGGTGGGCGGCTG
i calJac3.chr21             I 1 C 0
s mm10.chr16                 91597858 135 +  98207768 GAGACCAATCATAGTGCGACCGAT--TAGATAGAGGGCGGGGCTTGATTCCTGAGGGCGGGGCTGGCGC-GGTGCTCTACCTGCGTCCTGGAGCTGAGGTCCGGACCTCTCCTGCTGCGGTTTGCGGTAGTAGTGTAA----------------------------------
i mm10.chr16                I 1 C 0
s canFam3.chr31              28098345 107 +  39895921 --------gctgcccgctgcccgctgcccgctgcccgctgcccgct-gcccgcGCGCCGGGACTC-----GCGGCCGCGTAAACGT----GAGCCGAGGTGCTGCCGT-----CTTGCGGACGGCGGCTG------------------------------------------
i canFam3.chr31             C 0 C 0
e nomLeu3.chr25              20016172 1263 +  32716333 M

a score=1060292.000000
s hg38.chr21_GL383581v2_alt     84408 321 +    116689 CCGCCGGGCTCCCACTGCTGCGTTTCTGCACGCTGACTTGAAGTGCAGTA-CCGTGAGATTAC--GTG--CGGACGGAGCTCGAGACCCGGGGGACCAGGG---TTTCCCTTCGCCTAT-GGCCGATCAGTCTTGTCTGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTCCGGGAGGGT---TCTC---GGGAACggagggtctttagagatgcctttttctaatcccctcaattcagaaatggagccccagaaagttgaagttagtaaaccagggctacccagcgagtgctggttacccgaggtgatcctcacaatacaactagtcttctgatt
s panTro4.chr21              19588536 321 +  32799110 CCGCCGGGCTCCCACTGCTGCGTTTCTGCACGCTGATTTGAAGTGCAGTA-CCGTGAGATTAC--GTG--CGGACGGAGCTCGAGACCCGGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGATCAGTCTTGTCTGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTCCGGGAGGGT---TCTC---GGGAACggagggtctttagagatgcctttttctaatcccctcaattcagaaatggagccccagaaagttgaagttagtaaaccagggctacccagcgagtgctggttacccgaggtgatcctcacaatacaactagtcttctgatt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34493508 320 +  48394510 CCGCCGGGCACCCGCTGCTGCGTTTCTGCACGCGGACTTGAAGTGCAGTA-CCGTGAGATTAC--GTG--CGGACGGAGCTCGAGACCCGGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGTTCAGTCTTGTCTGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTCCGGAAGGGT---TCTC---GGGAACggagggtctttagagatgcctttttctaatcccctcaattcagaaatggagccccagaaagttgaagttagtaaaccagggctacccagcgagtgctggttacccgaggtgatcctcacaatacaa-tagtcttctgatt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20017435 320 +  32716333 CCGCCGGGCTCCCACTG-TGCGTTTCTGCACGCGGACTTGAAGTGCAGTA-CCGTGAGATCAC--GTG--TGGACGGAGCTCGAGATCCGGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGATCGGCCTCGTCTGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTTCTCCGGGAGGGT---TCTC---GGGAACggagggtctttagagatgcctttttctaatcccctcaattcagaaatggagccccagaaagttgaagttagtaaaccagggctacccagcgagtGCTGGTTACCCGAGGTTATCCTCATAATACAACTAGTCTTCTGACT
i nomLeu3.chr25             M 1263 C 0
s rheMac3.chr3              185175745 320 - 198365852 CCGCCGGGTTCCCACTGCTGCGTTTCTGCACGCAGACTTGAAGTGCAGTA-CCGTGAGATCAC--GTG--CGGACGGAACTCGAGACTCGGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGATCAGCCT----TGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTTCGGGAGGGT---TCTCGAAGGAAACggagggtctttagagatgcctttttctaatcccctcaattcagaaattgagccccggaaagttgaagttagtcaaccagggctactcagcgaCTGCTGGTTACCCGAGGTGATCCTCACAATACAACTAGTCTTCTGATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179018745 320 - 192294377 CCGCCGGGTTCCCACTGCTGCGTTTCTGCACGCAGACTTGAAGTGCAGTA-CCGTGAGATCAC--GTG--CGGACGGAACTCGAGACTCGGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGATCAGCCT----TGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTTCGGGAGGGT---TCTCGAAGGAAACggagggtctttagagatgcctttttctaatcccctcaattcagaaattgagccccagaaagttgaagttagtcaaccagggctactcagcgaCTGCTGGTTACCCGAGGTGATCCTCACAATACAACTAGTCTTCTGATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167399079 320 - 180432695 CCGCCGGGTTCCCACTGCTGCGTTTCTGCACGCAGACTTGAAGTGCAGTA-CCGTGAGATCAC--GTG--CGGACGGAACTCGAGACTCGGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGATCAGCCT----TGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTTCGGGAGGGT---TCTCGAAGGGAACGGAGGGTCTTTAGAGATGCCTTTTTCTAATCCCCTCAATTCAGAAATTGAGCCCCAGAAAGTTGAAGTTAGTCAACCAGGGCTACTCAGCGACTGCTGGTTACCCGAGGTGATCCTCACAATACAACTAGTCTTCTGATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31672033 316 -  90373283 CCGCCGGGTTCCCACTGCTGCGTTTCTGCACGCAGACTTGAAGTGCAGTA-CCGTGAGGTCAC--GTG--CGGACGGAACTCGAGACT-GGGGGACCAGGG---TCTCCCTTCGCCTAT-GGCCGATCAGCCT----TGTCTGC-GAGCTGCCCAGAGTAGGGAAGGTGCTTCGGGAGTGT---TCTC---GGGAACggagggtctttagagatgcctttttctaatcccctgaattcagaaattgagccccagaaagttgaagttagtcaaccagggctactcagcgaCTGCTGGTTACCCCAGGTGATCCTCACAATACCACTAGTCTTCTGATT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37485080 319 +  50472720 CCGCCGGGCTCCCACTGCTGCGTTTTTGCCCGCGGATTTCAAGTGCAGTA-CCGTG-GATCAC--GTA--CGGAAGGAGCTGGAGACCCAGGGGACCGGGTCTCTCTCCCCTCGCCTAT-GACCAATCGGCTT----TGTCTGC-GAGCTGCCAAGAGTAGAGAAGGTGCTCCGAGAGGGT---TCTC---GGGAACggagggtctttagagatgcctttttctaatcccctcaattcagaaatggagacccagaaagttgaagttagtcaaccagggctacccagcgagtGCTGGTTACCCGAGATTATCAGCACAATAAAACTAGTCTTCTGATT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91597993 220 +  98207768 -------------ACTCAAGCGCCTCAGCAT--------------------CGGTGAGAGCACCGGTA--CGG--GGAACCCAAGCCTATTACG--CAAGG-----TCCTCTTGCATATCAGCAGTTGAGCAT----TGTTCAC-CAGCTGCCGAGAGTCGAGAACGCACTCCAAGACG--------------------------------------------------------TTCAAAAACCAAGACCTCAGAAGATGAAGTTACAGGTCCAGGGAT-CCCAGTCAGTACTGGTTTTCTGAGGGTACCCGCAAAGCAAAGCTA-----------
i mm10.chr16                C 0 C 0
s canFam3.chr31              28098452 318 +  39895921 GGGCCCGGCTCCCGCCGCTGCGTTTCTGCTCGCGGAGCTCAAGTGCAGCACCCGTGAAATCAC--GCGCTCGGAGGGCACCCAAGACCCAGAGGGCAGGGA--CTCTGCCTCCA------GGCCCCGCCGCGC----TGGCCGCTGAGCTGCCCAGAGGAGGGCAAGTGCTGCAGAAAGGGGAATCTC---AGGACCCGAAGGTCTGCAGGGACGCCCTTTGCTAACGCCACCG-CTCAGAAGGGGAGGCCCAGAAAAGTGAAGTTTCTCGTCCGAGGCTA-TCGGCTAGCTCTGTTAGCCCGAGGTGACCAGCACAGGACAACTAGTCTTCTAATT
i canFam3.chr31             C 0 I 717

a score=555008.000000
s hg38.chr21_GL383581v2_alt     84729 224 +    116689 tcgctcggcgctctcccgtctattcaCGTAGAtttttgtc---tttttttttt-tttttCGTCTTTCTTATAG--------------------------------------------------------TCAGATATCTTTCAGCCTCTTGGATTTTCAACATAACTTTAACAGCGTTTGGAAGCCCCGTCTAAATTTCCTACAGAAATGCCTATAACCATTTAGTTGTTTGGGGGAAAGTCGAGCTTTGTTTTTTGGGTG----Gtttgtttgtttgttttgagaca
s panTro4.chr21              19588857 229 +  32799110 tcgctcggcgctctcccgtctattcaCGTAGATTTTTGTC---TTTTTTTTTTCTTCTTCTTCTTTCTTATAG--------------------------------------------------------TCAGATATCTTTCAGCCTCTTGGATTTTCAACATAACTTTAACAGCGTTTGGAAGCCCCGTCTAAATTTCCTACAGAAATGCCTATAACCATTTAGTTGTTTGGGGGAAAGTCGAGCTTTGTTTTTTGGGTGGtttgtttgtttgtttgttttgagaca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34493828 224 +  48394510 tcgctcggctctctcCCGTCTATTCACGCAGATTTTTGTC---TTTTTTTTTT-----TCGTCTTTCTTATAG--------------------------------------------------------TCAGATATCTTTCAGCCTCTTGGATTTTCAACATAACTTTAACAGCCTTTGGAAGCCCCGTCTAAATTTCCTACAGAAATGCCTATAACCATTTAGTTGTTTGGGGAAAAGTCGAGCTTTGTTTTTTGGGTGGtttgtttgtttgtttgttttgagaca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20017755 228 +  32716333 TCGCTCGGCGCTCTCCCGTCTATTCACAAAGATTTTTGTC---TTTTTTTTTT-TTCTTCATCTTTCTTATAG--------------------------------------------------------TCAGATATCTTTCAGCCTCTTGGATTTTCAACATAACTTTAACAGCCTTTGGAAGCCCTGTCTAAATTTCCTACAGAAATGCCTGTAACCATTTAGTTGTTTGGGGAAAAGTCGAGCTTTATTTTTTGGGTGGtttgtttgtttgtttgttttgagaca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176065 264 - 198365852 TTGTTCGGCGCTTTCCCGTCTATTCACGCAGAtttttgtc--ttttttttttt-ttttttgtctttcttatag-----------------tcagatatctttttgtttgtttgtttgtttttcttATAGTCAGGTATCTTTCAGCCTCTTGGATTTGCAACATAACTTTAACAGCCTTTGGAAGCCCCGTCTGAATTTCCTACAGAAATGCGTATAACCATTTAGTTGTTTGGGGAAAAGTTGACCTTTGTTTTTTGGGTG----Ctttgtttgtttgttttgagaca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019065 263 - 192294377 TTGTTCGGCGCTTTCCCGTCTATTCACGCAGATTtttgtc---tttttttttt-ttttttgtctttcttatag-----------------tcagatatctttttgtttgtttgtttgtttTTCTTATAGTCAGGTATCTTTCAGCCTCTTGGATTTGCAACATAACTTTAACAGCCTTTGGAAGCCCCGTCTGAATTTCCTACAGAAATGCGTATAACCATTTAGTTGTTTGGGGAAAAGTTGACCTTTGTTTTTTGGGTG----Ctttgtttgtttgttttgagaca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167399399 266 - 180432695 TTGTTCGGCGCTTTCCCGTCTATTCACgcagatttttgtcttttttttttttt-ttttttgtctttcttatag-----------------tcagatatctttttgtttgtttgtttgtttttcttatagtCAGGTATCTTTCAGCCTCTTGGATTTTCAACATAACTTTAACAGCCTTTGGAAGCCCCGTCTGAATTTCCTACAGAAATGCGTATAACCATTTAGTAGTTTGGGGAAAAGTTGACCtttgttttttgggtg----ctttgtttgtttgttttgagaca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31672349 263 -  90373283 TCGTTCGGCGCGTTCCCGTCTATTCACGCAGAtttttgtc----ttttttttt-ttttatgtctttcttatagtcagatatctttttttttt-----tttttttttttg-------gtttttcttATAGTCAGGTATCTTTCAGCCTCTTGGATTTTCAACATAACTTTAACAGCCTTTGGAAGCCCCGTCTAAATTTCCTACAGAAATGCGTATAACCATTTAGTTGTTTGGGGAAAAGTTGACCTTTGTTTTTTGGGTG----C----tttgtttgttttgagaca
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37485399 201 +  50472720 TCCCTCGGCAGTCTCCCGTCTATTCACCCAGATTTTTGTC-----------------------TTTCTTAAAG--------------------------------------------------------TTAGATCCCTTTCAGCCTCTTGGATTTTCAGCATAACTTTAACAGCCTTTGGAAGCCCCGTCTGGATTTCCTACGGAAATGCCTATAACCATTTAGTTGTTTCAGGCGAAATCGAGGTTTGTTTTTTGGGTG--------GTTGGtttgtttggagaca
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91598213  94 +  98207768 ------------------------CATAGCTATTTCAGCC---TGATTCCTTT----------TTCCGTCTAT--------------------------------------------------------CCAAATA---------------GATTTTTGGC----------------------------------------------------------------TTGTTTTGGG---AGCAAATCTTTACTTAT-------------------CTCCTTTAGAGATA
i mm10.chr16                C 0 I 82
e canFam3.chr31              28098770 717 +  39895921 I

a score=827431.000000
s hg38.chr21_GL383581v2_alt     84953 273 +    116689 gggtcttgctctgttgtccagggtggagtgcagtggtgtgatcttggctcactgcagcctcttacctcccacgctcaatcaatcctcccacctcagccttccgagtagctgggattacaggtgcgcaccaccatgcttggctaatttgtgtatttttagtagagacgggatttcacctggctgatcctgaactcctgacctcaggtgatccacccgcctctgcctcccaaaatgctgggattacaagcgtgggccactgtgcccagccAAGTA
s panTro4.chr21              19589086 273 +  32799110 gagtcttgctctgttgttcagggtggagtgcagtggtgtgatcttggctcactgcagcctcttacctcccacgctcaatcgatcctcccacctcagccttccgagtagctgggattacaggtgcgcaccaccatgcttggctaatttgtgtatttttagtagagacgggatttcacctggctgatcttgaactcctgacctcaggtgatccacccgcctctgcctcccaaaatgctgggattacaagcgtgggccactgtgcccagccAAGTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494052 273 +  48394510 gggtctttctctgttatccaggctggagtgcagtggtgtgatcttggctcactgcagcctcttacctcccacgctcaatcgatcctcccacctcagccttcccagtagctgggattacaggtgcgcaccaccatgcttggctaatttgtgtatttttagtagagacgggatttcacctggctgatcttgaactcctgacctcaggtgatccacccgcctctgcctcccaaaatgctgggactacaagcgtgggccactgtgcccagccAAGTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20017983 273 +  32716333 gggtcttgctctgttgtccaggctggagtgcagtggtgtgatcttggctcactgcggcctcttacctcccacgctcaatggatcctcccacctcagccttccgagtagctgagattacaggtgcgcaccaccatgctttgctaatttttgtatttttagtagagacaggatttcaccaggctgatcttgaactcctgacctcaggtgatccacccgcctctgcctcccaaaatgctgggattacaagcatgggccactgtgcccagccAAGTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176329 273 - 198365852 gggtcttgctgtgttgtccaggctggagtgtagtggtgtgatcttggctcactgcaccctcttatctcccacgttcaatcgatccttccacttccgccttcccagtaactgggattacaggtgcacgccaccatgcttggctaatttttgtatttttagtagagacgggatttcaccaggctgatctcgaactcctgacttcaggtgatccacccgccttcgcctcccaaaatgctggggttacaagcgtgagccactgtgcccagccAAGTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019328 273 - 192294377 gggtcttgctgtgttgtccaggctggagtgtagtggtgtgatcttggctcactgcaccctcttatctcccacgttcaatcgatccttccacttccgccttcccagtaactgggattacaggtgcacgccaccatgcttggctaatttttgtatttttagtagagacgggatttcaccaggctgatctcgaactcctgacttcaggtgatccacccgccttcgcctcccaaaatgctggggttacaagcgtgagccactgtgcccagccAAGTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167399665 273 - 180432695 gggtcttgctgtgttgtccaggctggagtgtagtggtgtgatcttggctcactgcaccctcttaTCTCCCAAGTTCAAtcgatccttccacttcagccttcccagtaactgggattacaggtgcacgccaccatgcttggctaatttttgtatttttagtagagacgggatttcaccaggctgatctcgaactcctgacttcaggtgatccacccgccttcgcctcccaaaatgctggggttacaagcgtgagccactgtgcccagccaagta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31672612 273 -  90373283 gggtcttgctctgttgtccaggctggagtgtagtgttgtgatcttggctcactgcaccttcttacctcccacgttcaatcgatcctcccacttcagccttcccagtaactgggattacaggtgcacgccaccatgcttggctaatttttgtatttttagtagagacgggatttcaccaggctgatctcgaactcctgacttcagttgatccacccgcctccgcctcccaaaatgctggggttacaagcgtgagccactgtgcccagccAAGTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37485600 271 +  50472720 ggatcttgttctgttgtccaggctggagtgcagtggcgtgatcttggctcactgcagtctc-tacctcccaggctcaagagatcctcccacctcagccttccgagtagctgagatcacaggggcacaccaccatgcttggctaatttttgtatttttagtagagacgagatttcaccaggctgatctcgatctcctaacctcag-tgatccacccgcttccgcctcccaaaatgctgggattacaggcacgagccaccgtgcccagcAGAGTA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598307  82 +  98207768 I
e canFam3.chr31              28098770 717 +  39895921 I

a score=347904.000000
s hg38.chr21_GL383581v2_alt     85226 109 +    116689 GAGTTATTATCA-GTGGAAATCTAAAAAGCATTTTACTTGAGGCATAATGAAGTAAAAGG--TTTTGTATCATGGAATTATCACCAAAAATG----CCATCCTGGATAATGTT-CTC
s panTro4.chr21              19589359 109 +  32799110 GAGTTATTATCA-GTGGAAATCTAAAAAGCATTTTACTTGAGGCATAATGAAGTAAAAGG--TTTTGTATCATGGAATTATCACCAAAAATG----CCATCCTGGATAATCTT-CTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494325 109 +  48394510 GAGTTATTATCA-GTGGAAATCTAAAAAGCATTTTACTTGAGGCATAATGAAGTAAAAGG--TTTTGTATCATGGAATTATCACCAAAAATG----CCATCCTGGATAATGTT-CTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018256 109 +  32716333 GAGTTATTATCA-ATGGAAATCTAAAAAGCATTTTACTTGAGGTATAATGAAGTGAAAGG--TTTTGTATCATGGAACTATCACCAAAAATG----CCATCCTGGATAATGTT-CTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176602 104 - 198365852 -----ATTATCA-ATGGAAATCTAAAAAGCATTTTACTTGAGGTATAATGAAGTTAAAGG--TTTTGCATCATGGAATTATCACCAAAAACG----CCATCCTGGATAATGTT-CTC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019601 104 - 192294377 -----ATTATCA-ATGGAAATCTAAAAAGCATTTTACTTGAGGTATAATGAAGTTAAAGG--TTTTGCATCATGGAATTATCACCAAAAACG----CCATCCTGGATAATGTT-CTC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167399938 104 - 180432695 -----aTTATCA-ATGGAAATCTAAAAAGCATTTTACTTGAGGTACAATGAAGTTAAAGG--TTTTGCATCATGGAATTATCACCAAAAACG----CCATCCTGGATAATGTT-CTC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31672885 104 -  90373283 -----ATTATCA-ATGGAAATCTAAAAAGCATTTTACTTGAGGTATAATGAAGTTAAAGG--TTTTGCATCATGGAATTATCACCAAAAATG----CCATCCTGGATAATGTT-CTC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37485871 113 +  50472720 GAGGTATTATCA-ATGGAAATCTAAAAAGCATTTTCCCTGTGGTATAATGAAGTAAAAGG--TTTTGTATCATGGAATTATCATTAAAAATGCCATCCATCCTGGATAATGTT-CTC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91598389 109 +  98207768 AAGTTACTACTACATTGAAGGTAAAAACACACTTCACCT-AGATAGAGTAAAGCAAAAAGATTTTTGTGTCACGTAACTGTCAC---AAATG----ACATCCTGGATCCTGTTACTC
i mm10.chr16                I 82 C 0
e canFam3.chr31              28098770 717 +  39895921 I

a score=302397.000000
s hg38.chr21_GL383581v2_alt     85335 75 +    116689 CTATAGCTCTTATACATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ATGTGCTGAATAATTTAC-TTTTGAAATATGT
s panTro4.chr21              19589468 75 +  32799110 CTGTAGCTCTTATACATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ATGTGCTGAATAATTTAC-TTTTGAAATATGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494434 75 +  48394510 CTATAGCTCTTATACATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ATGTGCTGAATAAGTTAC-TTTTGAAATATGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018365 75 +  32716333 CTATAGCTCTTATGCATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ACGTGCTGAATAAGTTGC-TTTTGAAATATGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176706 75 - 198365852 CTATAGCTCTTATACATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ATGTGCTGAATAAGTTAC-TTTTGAAATATGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019705 75 - 192294377 CTATAGCTCTTATACATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ATGTGCTGAATAAGTTAC-TTTTGAAATATGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400042 75 - 180432695 CTATAGCTCTTATACATGGGCTAGGAtctaggtg----------------ttcaataaat-atgtgctgaaTAAGTTAC-TTTTGAAATATGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31672989 75 -  90373283 CTATAGCTCTTATACATGGGCTAGGATCTAGGTG----------------TTCAATAAAT-ATGTGCTGAATAAGTTAC-TTTTGAAATATGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37485984 92 +  50472720 CTATAGCCCTTCTACATGTGCTAGGATCTAGGTGTGCTGAATAAGTTACTTTCAATAAATAATGTGCTGAACAAGTTAC-TTTTGAAATATGT
i calJac3.chr21             C 0 I 645
s mm10.chr16                 91598498 76 +  98207768 CTGTAGTTCTTGTATATAATCTAGGATTTAGGTA----------------TTCAATAAAT-ATTCACTGCATAAATTCCTTTTTGGAGTATGG
i mm10.chr16                C 0 C 0
s canFam3.chr31              28099487 74 +  39895921 CCATCATTCTGATACATGCGTTAGGATCTA-GTG----------------CTGAATAAAT-ATTTGTTGAATTATTTAC-TTTTGAAATATGT
i canFam3.chr31             I 717 I 1322

a score=151186.000000
s hg38.chr21_GL383581v2_alt     85410 58 +    116689 CACAATGCTGgcattccaccag--aagagaggatacagaagggaacactctcctctcttt
s panTro4.chr21              19589543 58 +  32799110 CACAATGCTGgcattccaccag--aagagaggatacagaagggaacactctcctctcttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494509 53 +  48394510 CACAATGCTGgcattccaccag--aagagaggatacagaagggaaca-----ctctcttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018440 58 +  32716333 CACAATGCTGgcattccaccag--aagagaggatacagaagggaacactctcctctcttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176781 58 - 198365852 CACAATGCTGGCGTTCCACCgg--aagagaggatgcagaagggaacactctcctctcttt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019780 58 - 192294377 CACAATGCTGGCGTTCCACCAG--AAGAGAGGATGCAGAAGGGAACACTCTCCTCTCTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400117 58 - 180432695 CACAATGCTGGCATTCCACCAG--AAGAAAGGATACAGAAGGGAACACTCTCCTCTCTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673064 58 -  90373283 CACAATGCTGGCATTCCACCAG--AAGAGAGGATACAGAAGGGAACACTCTCCTCTCTTT
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91598574 52 +  98207768 GATTATGCACACACACTAACAAGCAAGAGGGGCAGCAGAAGGGAACA--------TCTTT
i mm10.chr16                C 0 C 0
e canFam3.chr31              28099561 1322 +  39895921 I
e calJac3.chr21              37486076 645 +  50472720 I

a score=26700.000000
s hg38.chr21_GL383581v2_alt     85468 8 +    116689 aagaacct
s panTro4.chr21              19589601 8 +  32799110 aagaacct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494562 8 +  48394510 aagaacct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018498 8 +  32716333 aagaatct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176839 8 - 198365852 aagaacct
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019838 8 - 192294377 AAGAACCT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400175 8 - 180432695 AAGAACCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673122 8 -  90373283 AAGAACCT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37486721 8 +  50472720 aaaGACCT
i calJac3.chr21             I 645 C 0
s mm10.chr16                 91598626 8 +  98207768 AGGTATCT
i mm10.chr16                C 0 I 15598
e canFam3.chr31              28099561 1322 +  39895921 I

a score=376205.000000
s hg38.chr21_GL383581v2_alt     85476 126 +    116689 tttgaaaggggcgggggttgcatgtaccatttttgttttcattctgctagtaaaa----------------------------------------------------tagtcacttgactacaccaaattgcaaagaaggctggaaaatggggtttcagtactaaggaaggaaaacta
s panTro4.chr21              19589609 126 +  32799110 tttgaaaggggcaggggttgcatgtaccatttttgttttcattctgctagtaaaa----------------------------------------------------tagtcacttgactacaccaaattgcaaagaaggctggacaatggggtttcagtactaaggaaggaaaacta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494570 126 +  48394510 tttgaaaggggcaggggttgcatgtaccatttttgttttcattctgctagtaaaa----------------------------------------------------tagtcacttgactacaccaaattgcaaagaaggctggaaaatggggtttcagtactaaggaaggaaaacta
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018506 126 +  32716333 tttgaaaggggcgggggttgcatgtaccatttttgttttcattctgctagtaaaa----------------------------------------------------tagtcacttgactacaccaaattgcaaagaaggctggaaaatggggtttcagtactaaggaaggaaaacta
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176847 126 - 198365852 tttgaaaggggcgggggttgcatgtaccatttttgttttcattctgctactaaaa----------------------------------------------------tagtcacttgactacaccaaattgcgaagaagcctggaaaatggggtttcagtactaaggaaggaaaacta
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019846 126 - 192294377 TTTGAAAGGGGCGGGGGTTGCATGTACCATTTTTGTTTTCATTCTGCTACTAAAA----------------------------------------------------TAGTCACTTGACTACACCAAATTGCGAAGAAGCCTGGaaaatggggtttcagtactaaggaaggaaaacta
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400183 126 - 180432695 TTTGAAAGGGGCGGGGGTTGCATGtaccatttttgttttcattctgctACTAAAA----------------------------------------------------TAGTCACTTGACTACACCAAATTGCGAAGAAGCCTGGAAAATGGGGTTTCAGTactaaggaaagaaaacta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673130 126 -  90373283 TTTGAAAGGGGCGGGGGTTGCATGTACCATTTTTGTTTTCATTCTGCTACTAAAA----------------------------------------------------TAGTCACTTGACTACACCAAATTGCGAAGAAACCTGGaaaatgaggtttcagtactaaggaaggaaaacta
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37486729 178 +  50472720 TTTGAAGTGGGTAGGGGTGGCATGTATCATTTTTGCTCTCATTCTGCTGGTAAAAGCTTAGTCATTTTTGATTTGCAATAGCTTAGAATAAGTAAACAAAAAAAACTTAGTCATTTGACTTCACAAAATTGCAAAGAAGGCTAGAAAATGGGGTTTCAGAACTAGGGAAGGAAGACTA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I

a score=158845.000000
s hg38.chr21_GL383581v2_alt     85602 82 +    116689 gatattaggggacaattagaagtttcCAAATCTCATCAC-TTTTTT-------TGGGGGGGTGGGGGAGGCATCCCAAAGGGCAGACTGG
s panTro4.chr21              19589735 82 +  32799110 gatattaggggacaattagaagtttcCAAATCTCATCAC-TTTTTT-------GGGGGGGGGGGGGGAGGCATCCCAAAGGGCAGACTGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494696 83 +  48394510 gatattaggggacaattagaagtttcCAAATCTTATCACTTTTTTT-------GGGGGGGGTGGGGGAGGCATCCCAAAGGGCAGACTGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018632 79 +  32716333 gatattaggggacaattagaagtttcCAAATCTCATCAC-TTTTTT-------TGGGCG---GGGGGAGGCATCCCAAACGGCAGACTGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185176973 89 - 198365852 gatattaggggacaattagaagtttcCAAATCTCATCAC-TTATTTGCGGGGGGGGTGGGGTGGGGGAGACATCCCAAAGGGCAGACTGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179019972 89 - 192294377 gatattaggggacaattagaagtttcCAAATCTCATCAC-TTATTTGCGGGGGGGGTGGGGTGGGGGAGACATCCCAAAGGGCAGACTGG
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31673256 85 -  90373283 gatattaggggacaattagaagtttcCAAATCTCATCAC-TTATTT----GGCGGGGGGGGTGGGGGAGGCATCCCAAAGGGCAGACTGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37486907 72 +  50472720 GATATTAGGGGACAATTAGA---TTTCAAATCTCATCAC-CTTTTT-------TTTTAGG--GGGGGGACTGTCCCAAAGGGCAG-----
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e papAnu2.chr3              167400309  0 - 180432695 C

a score=12555.000000
s hg38.chr21_GL383581v2_alt     85684 9 +    116689 TTTATTAGG
s panTro4.chr21              19589817 9 +  32799110 TTTATTAGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494779 9 +  48394510 TTTATTAGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018711 9 +  32716333 TTTATTAGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177062 9 - 198365852 TTTATTAGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020061 9 - 192294377 TTTATTAGG
i macFas5.chr3              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e calJac3.chr21              37486979 0 +  50472720 C
e chlSab2.chr2               31673341 0 -  90373283 C
e papAnu2.chr3              167400309 0 - 180432695 C

a score=2910.000000
s hg38.chr21_GL383581v2_alt     85693 3 +    116689 CAG
s panTro4.chr21              19589826 3 +  32799110 CAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494788 3 +  48394510 CAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018720 3 +  32716333 CAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177071 3 - 198365852 cag
i rheMac3.chr3              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e calJac3.chr21              37486979 0 +  50472720 C
e chlSab2.chr2               31673341 0 -  90373283 C
e papAnu2.chr3              167400309 0 - 180432695 C
e macFas5.chr3              179020070 0 - 192294377 C

a score=1045313.000000
s hg38.chr21_GL383581v2_alt     85696 1256 +    116689  
s panTro4.chr21              19589829 1257 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34494791 1256 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20018723 1252 +  32716333  
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37486979 1236 +  50472720  
i calJac3.chr21             C 0 I 140
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e rheMac3.chr3              185177074    0 - 198365852 C
e chlSab2.chr2               31673341    0 -  90373283 C
e papAnu2.chr3              167400309    0 - 180432695 C
e macFas5.chr3              179020070    0 - 192294377 C

a score=99166.000000
s hg38.chr21_GL383581v2_alt     86952 119 +    116689 tgaactttttggggacacattcaaaccatagcaCAATTTGCTTCTCTCAGTCTATAAACCTCTATTCCACAAAGAGTCAAACATGTATTTAGTTATGCTTTCAAAAATATGGGCATTTg
s panTro4.chr21              19591086 119 +  32799110 tgaactttttggggacaccttcaaaccatagcaCAATTTGCTTCTCTCAGTCTATAAACCTCTATTCCACAAAGAGTCAAACATGTATTTAGTTATGCTTTCAAAAATATGGGCATTTg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496047 119 +  48394510 tgaactttttggggacacattcaaaccataacaCAATTTGCTTCTCTCAGTCTATAAACCTCTATTCCACAAAGAGTCAAATATGTATTTAGTTATGCTTTCAAAAATGTGGGCATTTg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20019975 119 +  32716333 tgaactttttggggacacattcaaaccatagcaCAATTGGCTTCTCTCAGTCTATAAACCTCCATTCCACAAAGAGTCAAACATGTATTTAGTTATGCTTTCAAATATATGGGCATTTA
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37488355 118 +  50472720 TTAACATTCTGGGGACAAATTCAAACCACAGCACAATTTGCTTCTCTCAGTCTATAAACCTCTATTCCCTAAAGAGTCAAACATGTATTTAGTTGTGCTTTCAAA-ATATGGACATTTg
i calJac3.chr21             I 140 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e rheMac3.chr3              185177074   0 - 198365852 C
e chlSab2.chr2               31673341   0 -  90373283 C
e papAnu2.chr3              167400309   0 - 180432695 C
e macFas5.chr3              179020070   0 - 192294377 C

a score=280473.000000
s hg38.chr21_GL383581v2_alt     87071 252 +    116689 gccgagcacagtgcctcacacctgtaatcccagcactttgggaaccagaggcggttggatcacctgaggtcaggagttccagatcagcctggtcaacatggtaaaattccgtctcaactaaaa--agaaaaaacaattagctgggcatggtgatacatgcctgtaatcccaactactcaggaggctgaggcaggagaatcacttgaatcc-gagaggcagaggttgcagtgagccaagatcacgccactgcactc
s panTro4.chr21              19591205 251 +  32799110 gccgagcacagtgcctcacacctgtaatcccagcactttgggaaccagaggcggttggatcacctgaggtcaggagttccagatcagcctggtcaacatggtaaaattccgtctc-actaaaa--agaaaaaacaattagctgggtgtggtgatacatgcctgtaatcccaactactcaggaggctgaggcaggagaatcacttgaatcc-gagaggcagaggttacagtgagccaagatcacgccactgcactc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496166 250 +  48394510 gccgagcacagtgcctcacacctgtaatcccagcactttgggaaccagaggcggttggatcacctgaggtcaggagttccagatcagcctggtcaacatgataaaatcccatctcaactaaaa--agaaaaaacaattagctgggcgtggtgatacatgcctgtaatcccaactactcaggaggct--ggcaggagaatcacttgaatcc-aagaggcagaggttgcagtgagccaagatcacgccactgcactc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20020094 252 +  32716333 gccgagcacagtgcctcacacctgtaatccctgcactttgggaaccagaggcggttggatcacctgaggtcaggagttccagagcagcctggtcaacatggtaaaatcccatctcaactaaaa--agaaaaaacaattagctgggcgtggtgatacatgcctgtaatcccaactactcaggaggctgaggcaggagaatcacttgaatcc-gagaggtagaggttgcagtgagccaagatcacgccactgcactc
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167400309 250 - 180432695 gccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggtggatcac--gaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaa--atacaaaa-aactagccgggcgcggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccggggaggcggagcttgcagtgagccgagatcgcgccactgcactc
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37488473 243 +  50472720 gcagagcacagtggctcacacctggaatcccagcattttgggagcctgaggcaggtagatcacctgaggtcaggagttcaagaccagcctgaccaacatggtaaa-----------actaaaaagagaaaaaaaaattagctagccatggtggtgcgtgcctgtaatcccagctactcaggaggctaaggcaggagaatgacttgaagcc-aagaggcagagtttgcagtgagccaaaatcatgccactgcactc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e rheMac3.chr3              185177074   0 - 198365852 C
e chlSab2.chr2               31673341   0 -  90373283 C
e macFas5.chr3              179020070   0 - 192294377 C

a score=2100.000000
s hg38.chr21_GL383581v2_alt     87323 1 +    116689 c
s panTro4.chr21              19591456 1 +  32799110 c
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496416 1 +  48394510 c
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20020346 1 +  32716333 c
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179020070 1 - 192294377 c
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400559 1 - 180432695 c
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37488716 1 +  50472720 c
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e rheMac3.chr3              185177074 0 - 198365852 C
e chlSab2.chr2               31673341 0 -  90373283 C

a score=5348.000000
s hg38.chr21_GL383581v2_alt     87324 2 +    116689 ag
s panTro4.chr21              19591457 2 +  32799110 ag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496417 2 +  48394510 ag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20020347 2 +  32716333 ag
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179020071 2 - 192294377 ag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400560 2 - 180432695 ag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673341 2 -  90373283 ag
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37488717 2 +  50472720 ag
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I
e rheMac3.chr3              185177074 0 - 198365852 C

a score=92476.000000
s hg38.chr21_GL383581v2_alt     87326 38 +    116689 cctgggcgacagaacaagactccgtctcaaaaaaaaaa
s panTro4.chr21              19591459 37 +  32799110 cctgggtgacagaacaagactccgtctc-aaaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496419 32 +  48394510 cctgggcgacagaacaagactccgtctc------aaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20020349 37 +  32716333 cctgggccacagaacaagactccgtctc-aaaaaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177074 37 - 198365852 cctgggcaacagagtgagactctgtctc-aaaaaaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020073 37 - 192294377 cctgggcaacagagtgagactctgtctc-aaaaaaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400562 37 - 180432695 cctgggcgacagcgcgagattccgtttc-aaaaaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673343 37 -  90373283 cctgggcaacagagtgagactctgtctc-aaaaaaaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37488719 37 +  50472720 cctgggctacggaacaagactgtgtctc-aaaaaaaga
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28099561 1322 +  39895921 I

a score=15958.000000
s hg38.chr21_GL383581v2_alt     87364 8 +    116689 aaaaaaaa
s panTro4.chr21              19591496 8 +  32799110 aaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496451 8 +  48394510 aaaagaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20020386 8 +  32716333 aaaaaaaa
i nomLeu3.chr25             C 0 I 627
s rheMac3.chr3              185177111 8 - 198365852 aaaaaaag
i rheMac3.chr3              C 0 I 1
s macFas5.chr3              179020110 8 - 192294377 aaaaaaag
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167400599 8 - 180432695 aaaaaaaa
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31673380 3 -  90373283 aaa-----
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37488756 8 +  50472720 aaaaaaaT
i calJac3.chr21             C 0 I 1
s canFam3.chr31              28100883 8 +  39895921 AAAATATG
i canFam3.chr31             I 1322 C 0
e mm10.chr16                 91598634 15598 +  98207768 I

a score=250370.000000
s hg38.chr21_GL383581v2_alt     87372 102 +    116689 GGCATTTGAAAGATACGGGGATTAAGTTGCTGATGTCAACATTTCGCTGTC--A--ATTCCAAATGTACTGATTTAAGTATTTAGTAGAATTGTAAATCAGCCTTT
s panTro4.chr21              19591504 102 +  32799110 GGCATTTGAAAGATACGGGGATTAAGTTGCTGATGTCAACATTTCGCTGTC--A--ATTCCAAATGTACTAATTTAAGTATTTAGTAGAATTGTAAATCAGCCTTT
i panTro4.chr21             C 0 I 1
s ponAbe2.chr21              34496459 102 +  48394510 GGCATTTGAAAGATATTGGGATTAAGTTGCTGATGTCAACATTTCACTGTC--A--ATTCCAAATGTACTGATTTAAGTATTTAGTAGAATTGTAAATCAGCCTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021021 102 +  32716333 GGCATTTGAAAGATACTGGGATTAAGTTGCTGATGTCAACATTTCACTCTC--A--ATTCCAAATGTACTGATTTAAGTATTTAGTAGAATTGTAAATCAGCCTTT
i nomLeu3.chr25             I 627 C 0
s rheMac3.chr3              185177120  76 - 198365852 ------aGAAAGATATTGGAATTAAGTTGCTGATGTCAACATTTCACTGTC------------------------AAGTCTTTAGTAGAATTGTAAATCAGCCTTT
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              179020119  76 - 192294377 ------aGAAAGATATTGGAATTAAGTTGCTGATGTCAACATTTCACTGTC------------------------AAGTCTTTAGTAGAATTGTAAATCAGCCTTT
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167400608  68 - 180432695 ------aaaaaaaaa--------aagttgctgatGTCAACATTTCACTGTC------------------------AAGTCTTTAGTAGAATTGTAAATCAGCCTTT
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31673384  76 -  90373283 ------agaaagaTATTGGAATTAAGTTGCTGATGTCAACATTTCACTGTC------------------------AAGTCTTTAGTAGAATTGTAAATCAGCCTTT
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37488765 104 +  50472720 GGCATTTGAAAGATATTGGGATTGAGCTGCTGATGTCAACATTTCACTGTCAGA--ATTCCAAATGTACTGATTTAAGTCTTTAGTAGAATTGTAAATCAGCCTTT
i calJac3.chr21             I 1 C 0
s canFam3.chr31              28100891 101 +  39895921 GGCATTTGAAATGTATGGAGATTAAGTTACTGATGCCAAAATTTCAATGTC--ATCATTTCAAATGCACTGATTTGAGTCTTTAGTAAAATTGCAAATCAGTT---
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I

a score=38512.000000
s hg38.chr21_GL383581v2_alt     87474 22 +    116689 AAAAAAAAAAACCACACATggc
s panTro4.chr21              19591607 22 +  32799110 AAAAAAAAAAACCACACATggc
i panTro4.chr21             I 1 C 0
s ponAbe2.chr21              34496561 20 +  48394510 --AAAAAAAAACCACACATggc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021123 19 +  32716333 ---TAAAAAAACCACATGTggc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177196 19 - 198365852 ---AAAATATACCACACATggc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020195 19 - 192294377 ---AAAATATACCACACATggc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400676 19 - 180432695 ---AAAATATACCACAcatggc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673460 19 -  90373283 ---AAAATATACCACACATggc
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28100992 22 +  39895921 TAAACAAATCTTCACATCTGCC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e calJac3.chr21              37488869  0 +  50472720 C

a score=666064.000000
s hg38.chr21_GL383581v2_alt     87496 288 +    116689 cgggtgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcggacagaccatgaggtcaggcattcgagaccagcctggcaaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggcgctcacctgtaatcgcagctactcaagaggctgaagcaggagaatcgcttgaatctgggagtcagagcttgcagtgagccgagattgcaccactgcactccagcctgggcgacagagtgagactaagtctcaaaaaaaaaaa----
s panTro4.chr21              19591629 288 +  32799110 cgggtgcggtggttcaagcctgtaatcccagcactttgggaggccgaggcaggcagaccatgaggtcaggcattcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggtgctcacctgtaatcgcagctactcaagaggctgaagcaggagaatagcttgaatctgggagtcagagcttgcagtgagccgagattgcaccactgcactccagcctgggcgacagagtgagactaagtctcaaaaaaaaaaa----
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496581 288 +  48394510 cgggtgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggcggaccatgaggtcagtcattcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcatgatggcgctcacctgtaatcccagctactcaagaggctgaggcaggagaatcgcttgaacctgggagtcagaggttgcagtgagccaggattgcaccactgcactccagcctgggtgacagagtgagactccgtctcaaaaaaacaaa----
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021142 284 +  32716333 cgggtgcagtggctcaagcctgtaatcctagcactttgggaggctgaggcg----gatcacaaagtcaggtgttcaagaccagccttgccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcgtggtggcgctcacctgtaatcccagctactcaagaggctgaggcaggagaatcgcttgaacccgggagtcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcgacacagtgagactccgtttcaaaaaaaaaaa----
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177215 287 - 198365852 ccggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagg-gggcagatcacagggtcaggcgttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggcactcacctataatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagtcagaggttgcagtgagccgagatcacagcactgcactccagcctgggtgacagagtgagcctctgtctcaaaaaaaacaa----
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020214 287 - 192294377 ccggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagg-gggcagatcacaaggtcaggcgttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggcactcacctctaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagtcagaggttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagtgagactctgtctcaaaaaaaacaa----
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400695 287 - 180432695 ctggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagg-gggcggattacaaggtcaggcgttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggcgctcacctctaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagtcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaacaa----
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673479 291 -  90373283 ccggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagg-gggcggatcacaaggtcaggcattcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggcgctcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagtcagaggttgcagtgagctgagatcacaccactgcactccagcctggacgacagagtgagactctgtctcaaaaaaaacaaaaac
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101014   0 +  39895921 C
e calJac3.chr21              37488869   0 +  50472720 C

a score=18630.000000
s hg38.chr21_GL383581v2_alt     87784 18 +    116689 aa-------aaaaaCC------ACACATTTT
s panTro4.chr21              19591917 20 +  32799110 aaa-----gaaaaaCC------ACACATTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496869 24 +  48394510 ca-------aacaaacaaacaaacaCATTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021426 22 +  32716333 aaa-----aaaaaaCC----ACACACATTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177502 24 - 198365852 aaacaaacaaaaaaaC------ACA-ATATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020501 24 - 192294377 aaacaaacaaaaaaaC------ACA-ATATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167400982 24 - 180432695 aaacaaacaaaaaaac------aca-atttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673770 24 -  90373283 aaacaaacaaaaaaaC------ACA-ATTTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37488869 18 +  50472720 -------AAAAAAACC------ACACATTTT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101014  0 +  39895921 C

a score=1161118.000000
s hg38.chr21_GL383581v2_alt     87802 332 +    116689 CTAATTCAATTGGTATTCTACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCCAAGCACTTCAGAGAGGCACTCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTAGAC--AG--AAAATGCAGTCCAGTTGGTACAAGCCTATTAAGAGAAAGGAACAATCCAGGCTGTCCTTCACGCTACGCCCCATGGGTTCTAGTTTATTCTC----TCTCAGGGCTGCTTCATGAACTTACTCTGATAGAGTGGTATTCACGTC-CATCTTTTGAGTGTA
s panTro4.chr21              19591937 332 +  32799110 CTAATTCAATTGGTTTTCTACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCCAAGCACTTCAGAGAGGCGCTCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTAGAC--AG--AAAATGCAGTCCAGTTGGTACAAGCCTATTAAGAGAAAGGAACAATCCAGGCTGTCCTTCACGCTACGCCCCATGGGTTCTAGTTTATTCTC----TCTCAGGGCTGCTTCATGAACTTACTCTGATAGAGTGGTATTCACATC-CATCTTTTGAGTGTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34496893 330 +  48394510 CTGATTCAGTTGGTATTCTACCATGTAGCTACTGAAGCACATGTTTTGTTAAATTCCTGTTACCTAAGCACTTCAGAGAGGCGCTCCTAGATTCTGAAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTAGAC--AG--AAAATGCAGTCCAGTTGGTACAAGTCTATTAAGAGAAAGGAACAATCCAGGCTGTCCTTCATGCTACGCCCCATGGGTTCTAGTTTAT--TC----TCTCAGGGCTGCTTCATGAACTTACTCTGATAGAGTGGTATTCACTTC-CATCTTTTGAGTGTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021448 332 +  32716333 CTGATTCAGTTGGTATTCTACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCTAAGCACTTCAGAGAGGCTCTCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCCAAAACTAGAC--AG--AAAATGCAGTCCAGTTGGTACAAGCCTATTAACAGAAAGGAACAATCCAGGCTGTCCTTCATGCTACACCCCATGGGTTCTAGTTTATTCTC----TCTCAGGGCTGCTTCATGAACTTACTCTGATAGAGTGGTATTCACTTC-CATCTTTTGAGTGTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177526 323 - 198365852 CTGCTTCAG------TTCCACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCTAAGCACTTCAGAGAGGCTCTCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTGGAC--AG--AAAATGCAGTCCAGTTGGTACAAGTCTATTAAGAGAAAGGAACAATTCAGGCTGTCCTTCACGCTATGCCCCATGGGTTCTAGTTTGTTCTC----TCTCAGGGCTGCTTCATGAACT---TCTGATAGAGTGGTATTCACTTC-CATCTTTTGAGTGTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020525 323 - 192294377 CTGCTTCAG------TTCCACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCTAAGCACTTCAGAGAGGCTCTCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTGGAC--AG--AAAATGCAGTCCAGTTGGTACAAGTCTATTAAGAGAAAGGAACAATTCAGGCTGTCCTTCACGCTATGCCCCATGGGTTCTAGTTTGTTCTC----TCTCAGGGCTGCTTCATGAACT---TCTGATAGAGTGGTATTCACTTC-CATCTTTTGAGTGTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167401006 323 - 180432695 ctgCTTCAG------TTCCACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCTAAGCACTTCAGAGAGGCTCGCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTGGAC--AG--AAAATGCAGTCCAGTTGGTACAAGTCTATTAAGAGAAAGGAACAATTCAGGCTGTCCTTCACGCTATGCCCCATGGGTTCTAGTTTGTTCTC----TCTCAGGGCTGCTTCATGAACT---TCTGATAGAGTAGTATTCACTTC-CATCTTTTGAGTGTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31673794 323 -  90373283 CTGCTTCAG------TTCCACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCTAAGCACTTCAGAGAGGCTCTCCTAGATTCTGGAGACATTGTGACTTCAGGACCATTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCTACTTCACCTAAAACTGGAC--AG--AAAATGCCGTCCAGTTGGTACAAGTCTATTAAGAGAAAGGAACAATTCAGGCTGTCCTTCACGCTATGCCCCATGGATTCTAGTTTGTTCTC----TCTCAGGGCTGCTTCATGAACT---TCTGATAGAGTGGTATTCACTTC-CATCTTTTGAGTGTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37488887 328 +  50472720 CTGATTCAGTTGGTATTCCACCATGTAGCTACTGAAGCATATGTTTTGTTAAATTCCTGTTACCCAAGCACTTCAGAGAGG-----CTAGATTCTGGAGTCATTGTGACTTCAGGACCGTTTTCAGGTTTGGGCCAGGACAGGTTCTGAAAGATCGACCTCACCTAAAACTAGACAGAG--AAAATGCAGTCCAGTTGGTACAAGTCTATTGAGAG-AAGGAACAATCCAGGCTGTCGTTCACGCTACACCCCATGGGTTCTAGATTGCTCTC----TCTCAGGGCTGCTTCATGAACTTACTCTGATAGAGTGGTATTCACTTC-CATCTTTTGAGTGTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28101014 334 +  39895921 CTGATTCAGTTGGTATTCCATCATGTAGCTACCTAAGC--ATGTTTTCTTAAATACTTATTCTGTAAGAACTTCAGTAAGGCCGTCCTAGAATCTGGAGTATCTATGACTTCAGGACC-CTTTCAGGTTTGGGCCAGGACA-GTTCTATAAGG-CTGCTTCACCTAAAATTAGAC--AGGCAGATTCCAGTCTGGTGGGTTCAAACCTACTAAGAGAAAGGAGCAATCCAAGCTGTCCTTCACACTAGGTCTTGCAGGTTCTGATTTGTTCTCCTTTTCTTAAGGCTGTTTCATGAACTTACTCTGATAAAGCGGCATTCAGTCCTCATCTTTTGAAAGTA
i canFam3.chr31             C 0 I 173
e mm10.chr16                 91598634 15598 +  98207768 I

a score=492079.000000
s hg38.chr21_GL383581v2_alt     88134 146 +    116689 CAAGCCAAATGTGTACCACAGGAACTATCTGAAAGGCTAAAACATGTTGCATAAACAGGTACTTCCCAAAATAT----TCTCTTTCTCCATATGCTTATGTGGTTGTATAACAAAAAGA-TTCATCTGAATAAGTCTTAGGCAGCTATTAG
s panTro4.chr21              19592269 151 +  32799110 CAAGCCAAATGTGTACCACAGGAACTATCTGAAAGGCTAAAACATGTTGCATAAACAGGTACTTCCCAAAATATTCTCTCTCTTTCTCCATATGCTTATGTGGTTGTATAACAAAAAGATTTCATCTGAATAAGTCTTAGGCAGCTATTAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34497223 151 +  48394510 CAAGCCAAATGTGTACCACAGAAACTATCTGAAAGGCTAAAACATGCTGCATAAACAGGTACTTCCCAAAATATTCTCTCTCTTTCTCCATATGCTTATGTGGTTGTATAACAAAAAGATTTCATCTGAGTAAGTCTTAGGCAGCTATTAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021780 151 +  32716333 CAAGCCAGATGTGTACCACAGGAACTATCTGAAAGCCTAAAACATGATGCATAAACAGGTACTTCCCAAAATATTCTCTCTCTTTCTTCATATGCTTATGTGGTTGTATAACAAAAAGACTTCATCTGAATAAGTCTTAGGCAGCTATTAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177849 147 - 198365852 CAAGCCAAATGTGTACCATGGGAATTATCTGAAAGGCTAAAACATGTTGCATAAACAGGTACTTCCCAAAATAT----TCTCTTTCTCCATATGCTTATGTGGTTATAAAGCAAAAAGACTTCATCTGAATAAGTCTTAGGCAGCTATTAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020848 147 - 192294377 CAAGCCAAATGTGTACCATGGGAATTATCTGAAAGGCTAAAACATGTTGCATAAACAGGTACTTCCCAAAATAT----TCTCTTTCTCCATATGCTTATGTGGTTATAAAGCAAAAAGACTTCATCTGAATAAGTCTTAGGCAGCTATTAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167401329 147 - 180432695 CAAGCCAAATGTGTACCATGGGAATTATCTGAAAGGCTAAAACATGTTGCATAAACAGGTACTTCCCAAAATAT----TCTCTTTCTCCATATGCTTATGTGGTTATAAAGCAAAAAGACTTCATCTGAATAAGTCTTAGGCAGCTATTAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674117 147 -  90373283 CAAGCCAAATGTGTACCATGGGAATTATCTGAAAGGCTAAAACATGTTGCATAAACAGGTACTTCCCAAAATAT----TCTCTTTCTCCATATGCTTATGTGGTTATAAAGCAAAAAGACTTCATCTGAATAAGTCTTAGGCAGCTATTAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37489215 151 +  50472720 CAAGCCAAATGTGTACCATGGGAACTATCTGAAAGGCCAAAACATGTTGCATAAACAGGTACTCCCCAGAACATTGTCTCTCTTTCTCCATATGCTTATCTGGTTGTATAACAAAAAGACTTGATCTGAATAACTCTTAGGCAGCTATTAG
i calJac3.chr21             C 0 I 307
s canFam3.chr31              28101521 131 +  39895921 CACACCCAATGTGTAATGCAGAAA----CTGAAAGACTAAAACTTAATGTGTAAACATGTACTTCTGAAAATATTG--TCACTTCCTCCATAAAGTTAGGGGGTTGTGTAACAAAAAGATTT----TGCGTAAGTC----------AGTAG
i canFam3.chr31             I 173 C 0
e mm10.chr16                 91598634 15598 +  98207768 I

a score=976977.000000
s hg38.chr21_GL383581v2_alt     88280 280 +    116689 AACTGTTGTATTTTGATAAAGGTGTCTTGAGACTAAGGTCATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGGCTATTCAGTGTCAGTCATTTAGGAGAAAAGACTGATCTTTAGATGGGAAACAAAAAACCAAGGCCTGGAAGATAATTTGACTCCAGCAGAAGAGGAAATACTTCTTTCCACA-TCTAGACT-CTGAAGACAGTGTATACatttgtcagttggtctctttcagttataagtaacagaaaagaacatctcaaactggctt
s panTro4.chr21              19592420 280 +  32799110 AACTGTTGTATTTTGATAAAGGTGTCTTGAGACTAACGTCATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGGCTATTCAGTGTCAGTCATTTAGGAGAAAAGACTGATCTTTAGATGGGAAACAAAAAACCAAGGCCTGGAAGATAATTTGACTCCAGCAGAAGAGGAAATACTTCTTTCCACA-TCTAGACT-CTGAAGACAGTGTATACatttgtcagttggtctctttcagttataagtaacagaaaagaacatctcaaactggctt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34497374 280 +  48394510 AACTGTTGTAGTTTGATAAAGGTGTCTTGAGACTAAGGTTATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGGCTATTCAGTGTCAGTCATTTAGGAGAAAGGACTGATCTTTAGATGGGAAACAAAAAACCAAGACCTGGAAGATAATTTGACTCCAGCAGAAAAGGAAATACTTCTTTCCACA-TCTAGACT-CTGAAGACAGTGGATACatttgtcagttggtctctttcagttataagtaacagaaaagaacatctcaaactggctt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20021931 280 +  32716333 AACTGTTGTATTTTGATAAAGGTGTCTTGAGACTAAAGTCATACTTCCTGTGGGTGTGAAATGGACTCTCTCCTGAAAGGATGGCTATTCAGTGTCAGTCATTTAGAAGAAAAGACAGATTTTTAGATGGGAAACAAAAAACTAAGGCCTGGAAGATAATTTGACTCCAGCAGAAGAGGAAACACTTCTTTCCACA-TCCAGACC-CTGAAGACAGTGGATACatttgtcagttggtctctttcagttacaagtaacagaaaagaacatatcaaactggctt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185177996 279 - 198365852 AACGGTTGTATTTTGATAAAGACGTCTTAAGACTAAGGTCATACTTcctgtgggtctgaaatggactctctcctgaaaggatggctactcagtgtcagtcatttaggagaaaaggttgatctttagatggaaaacaaaaaactaaggcctggaagataatttgactccagcagaagaggaaacacttctttccaca-tctagacc-ctgaagacagtGGATACatttgtcagttggtctctttcagttataagtaacagaaaaaaa-atctcaaactggctt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179020995 279 - 192294377 AACGGTTGTATTTTGATAAAGATGTCTTAAGACTAAGGTCATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGGCTACTCAGTGTCAGTCATTTAGGAGAAAAGGTTGATCTTTAGATGGAAAACAAAAAACTAAGGCCTGGAAGATAATTTGACTCCAGCAGAAGAGGAAACACTTCTTTCCACA-TCTAGACC-CTGAAGACAGTGGATACatttgtcagttggtctctttcagttataagtaacagaaaaaaa-atctcaaactggctt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167401476 279 - 180432695 AACGGTTGTATTTTGATAAAGATGTCTTAAGACTAAGGTCATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGGCTACTCAGTGTCAGTCATTTAGGAGAAAAGGTTGATCTTtagatggaaaacaaaaaactaaggcCTGGAAGATAATTTGACTCCAGCAGAAGAGGAAACACTTCTTTCCACA-TCTAGACC-CTGAAGACAGTGGATACATTTGTCAGTTGGTCTCTTTCAGttataagtaacagaaaaaaa-atctcaaactgGCTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674264 279 -  90373283 AACTGTTGTATTTTGACAAAGATGTCTTAAGACTAAGGTCATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGGCTAGTCAGTGTCAGTCATTTAGGAGAAAAGATAGATCTTTAGATGGAAAACAAAAAACTAAGGCCTGGAAGATAATTTGACTCCAGCAGAAGAGGAAACATTTCTTTCCACA-TCTAGACC-CTGAAGACAGTGGATACAtgtgtcagttggtctctttcagttataagtaacagaaaaaaa-atctcaaactggctt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37489673 277 +  50472720 AACTGTTGTATTTTGATAAAAGTGTCTTGAGACTAAGGTCATACTTCCTGTGGGTCTGAAATGGACTCTCTCCTGAAAGGATGAATATTCAGTATCAGTCATTTAGGAGAAAAGACTGATCTTTAGATGGCAAACGAGAAACCAAAGCCTGGAAAGTAATTTGACTCCAGCAGGAGAGGAAACACTTCTTTCCATA-TCTGCACT-CTGAAGACAGTGGATACatttgtcagttggtcgctttcagttataagtaagagaaaac---atctcaaactggctt
i calJac3.chr21             I 307 C 0
s canFam3.chr31              28101652 276 +  39895921 AACTGTTGTATTTGGATAAAGCTATCTTGAAATTAAGATCACA-TTCCTATGGATCCTAAAT-GACCCTCTCTCAGGAGTATGGATATTCAGTGCCAATCGTTTGGGAGAAA-GATTGGTCTTTAGATGGGAAAT--GAAACCAAAGTTTGGAGGGTTATGTGAGACAGGCAGGAGACGAGACATTTCTTTCTACAGTCTAGACTGTTGATGGCAGTGGCTTCATTTATCAATTGG-CTCCTTCAGTTGCAAGGAACAAGAAAAATAATCTCAAACTGGCTT
i canFam3.chr31             C 0 I 11329
e mm10.chr16                 91598634 15598 +  98207768 I

a score=428589.000000
s hg38.chr21_GL383581v2_alt     88560 154 +    116689 aaataatgagtaggattctgtggctcat-------------ggaactggaggatcagagttaTCATGGGtgttatggtctga--atgattatgtctcctcaaaactcttatgCCAGGGTACtatattagtccattttcacactgctataaaaacattacctgag-ct---ggg
s panTro4.chr21              19592700 154 +  32799110 aaataatgagtaggattctgtggctcat-------------ggaactggaggatcagagttaTCATGGGtgttatggtctga--atgattatgtctcctcaaaactcttatgctggggtactaCattagtccattttcacactgctataaaaacattacctgag-ct---ggg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34497654 159 +  48394510 aaataatgaggaggattctgtggctcac-------------ggaactggaggatcagagttaTCGTGGGTGTTACGGTCTGCTTTTTTTTAGGTCTCCTCAAAACTCTTATGCTGGGGTACtatattagtccattttcacactgctataaaaacatTACTTTTT-TTTTAggg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20022211 154 +  32716333 aaataatgaggaggattctgcggctcat-------------gcaactggaggatcagagttaTCGTGGGtgttatagtctga--atgattatgtctcctcaaaactcttatgctggggtactatattagtccattttcacactgctgtaaaaacattacctgag-ct---ggg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185178275 154 - 198365852 aaataatgaggaggattctgtggctcat-------------ggaactggaGGATCAGCGTTACCATGGGtgttatggtctga--gtgattatgtctcctcaaaactcttacattgGGGTACtatattagtccattttcacactgctgtaaaaacattccctgag-ct---ggg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179021274 154 - 192294377 aaataatgaggaggattctgtggctcat-------------ggaactggaGGATCAGCGTTACCATGGGtgttatggtctga--gtgattatgtctcctcaaaactcttacattgGGGTACtatattagtccattttcacactgctgtaaaaacattacctgag-ct---ggg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167401755 152 - 180432695 AAATAATGAGGAGGATTCTGTGGCTCAT-------------GGAACTGGAGGATCAGCGTTACCATGGGTGTTATGGTCTGA--GTGATTATGTCTCCTCAAAACTCTTACATTGGGGTACTAta-tagtccattttcacactgctgtaaaaacatta-ctgag-ct---ggg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674543 154 -  90373283 aaataatgaggaggattctgtggctcat-------------ggaactggaGGATCAGCGTTATCATGGGtgttatggtctga--gtgattatgtctcctcaaaactcttacattgGGGTACtatattagtccattttcacactgctgtaaaaacattacctgag-ct---ggg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37489950 165 +  50472720 aaataatgaggaagattctgtggctcagaggtataactgTAGGATCTGTAGGATCAGAGGTATCCTGGA---TATGGTTTGA--ATGATTATGTCTCCTCAAAACTCTTATGTTAGAGTACtatattaatccattttcacactgctataaaaatattacctgagact---ggg
i calJac3.chr21             C 0 I 3511
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I

a score=202910.000000
s hg38.chr21_GL383581v2_alt     88714 93 +    116689 cgcggtggctcacccctataatcccaacactttgggaggacga-ggagggcggaccacgacgtcaggagttcgagaccagcctgaccaacatgg
s panTro4.chr21              19592854 93 +  32799110 cgcggtggctcacccctgtaatcccaacactttgggaggacag-ggagggcggaccacgatgtcaggagtttgagaccagcctgaccaacatgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34497813 91 +  48394510 cacggtggctcacctctgtaatcccaacactttgggaaaaaggaggagggcggatcac---gtcaggagttcgagaccagcctggccaacatgg
i ponAbe2.chr21             C 0 M 476
s nomLeu3.chr25              20022365 93 +  32716333 tgcggtggctcacacctgtaatcccaacactttgggaggacga-ggaaggtggatcacgacgtcaggagttcaagaccagcctggccaacatgg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185178429 93 - 198365852 cgcagtggctcacgcctgtaatcccaacactttgggcggacga-caagggcggatcacgacgtcaggagttcaagaccaccctggccaacatgg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179021428 93 - 192294377 cgcagtggctcacgcctgtaatcccaacactttgggaggacga-caagggcggatcacgacgtcaggagttcaagaccaccctggccaacatgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167401907 93 - 180432695 cacagtggctcacgcctgtaatcccaacactttgggaggacga-caaggacggatcacgacgtcaggagttcgagaccaccatggccaacatgg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674697 93 -  90373283 cgcagtggctcacgcctgtaatcccaacactttgggaggatga-caagggcggatcatgacgtcaggagtttgagaccaccctggccaacatgg
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e calJac3.chr21              37490115 3511 +  50472720 I

a score=176449.000000
s hg38.chr21_GL383581v2_alt     88807 112 +    116689 tgaaattctgtctctactaaaaat-acaaaaattagccaggtgtggtggcaggtggttg--tagtcccagctactcaggaagctgaggcaggagaatcgtttgaacccggggtac
s panTro4.chr21              19592947 113 +  32799110 tgaaattctgtctctactaaaaataacaaaaattagccaggtgtggtggcaggtggttg--tagtcccagctactcaggaagctgaggcaggagaatcgtttgaacccggggtac
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20022458 112 +  32716333 tgaaattctgtctctactaaaaat-acaaaaattagccaggtgtggtggcgggtggttg--tagtcccagctactcaggaagctgaggcaggagaatcccttgaacccgggGTAC
i nomLeu3.chr25             C 0 I 100
s rheMac3.chr3              185178522 111 - 198365852 tgaaa--ctgtcgccactaaaaat-a-aaaaattggctgggtgtggtggcaggcacctgtatagtcccagctactcaggaagctgaggcaggagaatcgcttgaacccaggggac
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179021521 111 - 192294377 tgaaa--ctgtcgccactaaaaat-a-aaaaattggctgggtgtggtggcaggcacctgtatagtcccagctactcaggaagctgaggcaggagaatcgcttgaacccaggggac
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402000 111 - 180432695 taaaa--ctgtctccactaaaaat-a-aaaaattggctgggtgtggtggcaggcacctgtatagtcccagctactcaggaagctgaggcaggagaatcgcttgaacccgggggac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674790 111 -  90373283 tgaaa--ctgtctctactaacaat-a-aaaaattggctgggtgtggtggcaggcacttgtatagtcccagctactcaggaagctgaggcaggagaatcgcttgaacctgggggac
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e ponAbe2.chr21              34497904 476 +  48394510 M
e calJac3.chr21              37490115 3511 +  50472720 I

a score=105826.000000
s hg38.chr21_GL383581v2_alt     88919 85 +    116689 ---agaggttacagtgagccaagatcgtgccactgcactccagcctggAAGAtttgtttttca----ttttttttgagagagggtcttactc
s panTro4.chr21              19593060 86 +  32799110 ---agaggttacaatgagccaagatcgtgccactgcactccagcctggAAGAtttgtttttca---tttttttttgagacagggtcttactc
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185178633 91 - 198365852 gcaggaagttgcagtgagccaatatcgcgccactgtactccagcctggAAGAtttgtttttcg-gttttttttttgagacagggtcttactc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179021632 91 - 192294377 gcaggaagttgcagtgagccaatattgcgccactgtactccagcctggAAGAtttgtttttcg-gttttttttttgagacagggtcttactc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402111 91 - 180432695 acaggaagttgcaatgagccaatatcgcgccactgtactccagcctggaagatttgttttttg-gttttttttttgagacagggtcttactc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674901 92 -  90373283 acaggaggttgcagtgagccaatattgcgccactgtactccagcctggAAGAtttgtttttcgttttttttttttgagacagggtcttactc
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e ponAbe2.chr21              34497904 476 +  48394510 M
e calJac3.chr21              37490115 3511 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=227818.000000
s hg38.chr21_GL383581v2_alt     89004 125 +    116689 ttgcccaggctggagtgcagtggtgtgatcatggctcactgcagccttgacctcctgggctcaagcgatcctcccacctcaggctcccaagtagctgggactacaggaatgtgctaccacacctg
s panTro4.chr21              19593146 125 +  32799110 ttgcccaggctggagtgcagtggtgtgatcatggctcactgcagccttgacctcctgggctcaagcgatcctcccacctcaggctcccaagtagctgggactacaggaatgtgctaccacacctg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34498386 125 +  48394510 ttgcccaggctggagtgcaatggcgcaatctcggctcaccgcaaccttggcctcctgggttcaagagattctcccacctcaggctcccaagtagctgggactacaagaaagtgctaccacacctg
i ponAbe2.chr21             M 476 I 17
s rheMac3.chr3              185178724 125 - 198365852 ttgcctatgctggagtgcagtggtgtgatcagggctcactacagccttggcctcctgggctcaagcgatcctcccacctcaggctcccaggtagctaggactacaggaatgtgctaccacacctg
i rheMac3.chr3              C 0 I 379
s macFas5.chr3              179021723 125 - 192294377 ttgcctatgctggagtgcagtggtgtgatcagggctcactacagccttggcctcctgggctcaagcgatcctcccacctcaggctcccaggtagctaggactacaggaatgtgctaccacacctg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402202 125 - 180432695 ttgcccatgctggagtgcagtggtgtgatcagggctcactacagccttggcctcctgggctcaagcgatcctcccacctcaggctcccaggtagctaggactataggaatgtgctaccacacctg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31674993 125 -  90373283 ttgcccatgctggagtgcagtggtgtgatcagggctcactgcagccttgccctcctgggctcaagcgatcctcccacctcaggctcccaagtagctaggactacaggaatgtgctaccacacctg
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e calJac3.chr21              37490115 3511 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=5985.000000
s hg38.chr21_GL383581v2_alt     89129 23 +    116689 atttgttgttgttgttgttgttg
s panTro4.chr21              19593271 20 +  32799110 gt---ttttttttgttgttgttg
i panTro4.chr21             C 0 C 0
s macFas5.chr3              179021848 22 - 192294377 gcttttttctttttcttttttt-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402327 22 - 180432695 gcttttttctttttcttttttt-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675118 22 -  90373283 gctttttttttttttttttttt-
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e ponAbe2.chr21              34498511 17 +  48394510 I
e rheMac3.chr3              185178849 379 - 198365852 I
e calJac3.chr21              37490115 3511 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=475760.000000
s hg38.chr21_GL383581v2_alt     89152 382 +    116689 tttttggtagagacagagtttcaccatgtttctctggctggtctcaaactcctgggctcaagcaatcctcctgccttggtctctcaaaatgttgggattacaggcatgaac--caccgtgcctggccAATCAAAAAGATTTT-TTTAAAAAAAT-------GCATTCAGggctgggggcggtggctcatgcctgtaatctcagcactttggga-ggctgaggcgggtggatcacctgaggtcaggagtttgagacgagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagccggacgtggtggcacatgcctgtaatcccagctacttgggaggctggggcaggagaatctcttgaacccacta-ggcaaagtttgca
s panTro4.chr21              19593291 381 +  32799110 tttttggtagagacagagtttcaccatgtttccctggctggtctcaaactcctgggctcaagcaatcctcctaccttggtctctcaaaatgttgggattacaggcatcaac--caccgtgcctggccAATCAAAAAGA-TTT-TTTAAAAAAAC-------GCATTCAGggctgggggcggtggctcatgcctgtaatcccagcactttggga-ggctgaggcaggtggatcacccgaggtcaggagtttgagacgagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagccggacgtggtggcacatgcctgtaatcccagctacttgggaggctggggcaggagaatctcttgaacccacta-ggcaaagtttgca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34498528 378 +  48394510 tttttggtagagac--agtttcaccatgtttccctggctggtctcaaactcctgggctcaagcaatcctcttgccttggtctctcaaaatgttgggattacaggcatgaatcacaccgtgcctggccAATCAAAAACA-TTT-TTTAAAAAAAT-------GCATTTAGggctgggcgcggtggctcatgcctgtaatcccagcactttgggagggctgaggtgggtggatcacctgaggtcaggagtttgagacgagcatgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctg-----ggtggcacatgcctgtaatcccagctacttgggaggctggggcaggagaatctcttgaacccaggagggcaaaggttgcg
i ponAbe2.chr21             I 17 C 0
s macFas5.chr3              179021870 388 - 192294377 ttttttgtagagacagagtttcaccatgtttcctgggctggtctcaaactcctgggctcaagcaatcctcctgccttggtctctcaaaatgttgggattacaggcatgaac--cactgtgcctggccaatcaaaaaga-ttt-TTTAAAAAAATGCATTTAGCATTTAGggctgggtgcggtgtctcacgcctgtaattccagcactttggga-ggctgaggtgggtggatcacctgaggtcaggagctcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggggaatctcttgaacccagga-ggcagaggttgtg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402349 389 - 180432695 tttttggtagagacagagtttcaccatgtttcctgggctggtctcaaactcctgggctcaagcaatcctcctgccttggtctctcaaaatgttgggattacaggcatgaac--cactgtgcctggccaatcaaaaaga-tttaaaaaaaaaaatgcatttagcatttagggctgggtgcggtgtctcacgcctgtaattccagcactttggga-ggctgaggcgggtggatcacctgaggtcaggagctcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctgtaatcctagctacttggaaggctggggcaggggaatctcttgaacccagga-ggcagaggttgtg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675140 388 -  90373283 tttttggtagagacagagtttcaccatatttcctgggctggtctcaaactcctgggctcaagcaatcctcctgccttggtctctcaaaatgttgggattacaggcatgaac--cactgtgcctggccaatcaaaaaga-ttt-TTTAAAAAAATGCATTTAGCATTTAGggctgggtgcggtgtctcacgcctgtaatcccagcactttggga-ggctgaggtgggtggatcacctgaggtcaggacctcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctgtaatcccagctacttgggaggctggggcaggggaatctcttgaacccagga-ggcagaggttgtg
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e rheMac3.chr3              185178849 379 - 198365852 I
e calJac3.chr21              37490115 3511 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=106151.000000
s hg38.chr21_GL383581v2_alt     89534 58 +    116689 gtgagccgagattgcgccattgcactccagcctgggcaacaagagcaaaactccatta
s panTro4.chr21              19593672 58 +  32799110 gtgagccgagattgcaccattgcactccagcctgggcaacaagagcaaaactccatta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34498906 58 +  48394510 gtgagccgagattgcgccattgcactccagcctgggcaacaagagcaaagctccatcA
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185179228 58 - 198365852 gtgagccaagattgcaccattgcactccagcctgggcaacaagagaaaaactctgtca
i rheMac3.chr3              I 379 C 0
s macFas5.chr3              179022258 58 - 192294377 gtgagccaagattgcaccattgcactccagcctgggcaacaagagaaaaactctgtca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402738 58 - 180432695 gtgagccaagattgcaccattgcactccagcctgggcaacaagagaaaaactctgtca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675528 58 -  90373283 gtgagccaagattgcaccattgcactccagcctgggcaacaagagaaaaactctgtca
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e canFam3.chr31              28101928 11329 +  39895921 I
e calJac3.chr21              37490115 3511 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=75680.000000
s hg38.chr21_GL383581v2_alt     89592 45 +    116689 c--aaaaaaa-----aaaaaa--------TTAGATGCCTAGCCCAAAA---TA-TTATTACCAT-------
s panTro4.chr21              19593730 47 +  32799110 caaaaaaaaa-----aaaaaa--------TTAGGTGTCTAGCCCGAAA---TA-TTATTACCAT-------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34498964 47 +  48394510 CACACACACA-----CAAAAA--------TTAGGTGCCTAGCCCAAAA---TA-TTATTACCAT-------
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185179286 41 - 198365852 c------aaa-----aaaaaa--------TTAGGTGCCTAGCCCAAAA---TA-TTATTACCAT-------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179022316 41 - 192294377 c------aaa-----aaaaaa--------TTAGGTGCCTAGCCCAAAA---TA-TTATTACCAT-------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402796 41 - 180432695 c------aaa-----aaaaaa--------ttaggtgccTAGCCCAAAA---TA-TTATTACCAT-------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675586 41 -  90373283 c------aca-----aaaaaa--------TTAGGTGCCTAGCCCAAAA---TA-TTATTACCAT-------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37493626 60 +  50472720 --cAAAAAGATTTTTAAAAAA-CATTTACTTAGGTGGCTAGCCTAAAATATTA-TTATTACCAT-------
i calJac3.chr21             I 3511 C 0
s canFam3.chr31              28113257 61 +  39895921 --CAAAAAGA-----CAAAAAATATTTCTTCAGGTGGTCAGCCAAAAA---TAGTTATTATTTGTTGTTTG
i canFam3.chr31             I 11329 C 0
e mm10.chr16                 91598634 15598 +  98207768 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=382459.000000
s hg38.chr21_GL383581v2_alt     89637 127 +    116689 TATAACAAAGGGACATTGAATAATTATTATAG-TAACTTTATTAACATAGACAACATTTACAAACATAAAGTGCACTGTGCTGAAATTAAAAATTTACTGACATTTTCTGGTAACCTTACCTTCTCAT
s panTro4.chr21              19593777 127 +  32799110 TATAACAAAGGGACATTGAATAATCATTATAG-TAACTTTATTAACATAGACAACATTTACAAACATAAAGTGCACTGTGCTGAAATTAAAAATTTACTGACATTTTCTGGTAACCTTACCTTCTCAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34499011 127 +  48394510 TATAACAAAGGGACATTGAATAATCATTATAC-TAACTTTATTAACATAGACAACATTTACAAACATAAAGTGCACTGTGCTGAAATTAAAAATTTACTGACATTTTCTGATAACCGTACCTTCTCAT
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185179327 127 - 198365852 TATAACAAAGGACCATTGAATAATCATTATAA-TAACTTTATTAACATAGACAACATTTACAAACATAAAGTGCACTGTGCTGAAATTAAAAATGTACTGATATTTTCTGGTAACCTTACCTTCTCAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179022357 127 - 192294377 TATAACAAAGGACCATTGAATAATCATTATAA-TAACTTTATTAACATAGACAACATTTACAAACATAAAGTGCACTGTGCTGAAATTAAAAATGTACTGATATTTTCTGGTAACCTTACCTTCTCAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402837 127 - 180432695 TATAACAAAGGACCATTGAATaatcattataa-taattttattaacataGACAACATTTACAAACATAAAGTGCACTGtgctgaaattaaaaatgtactGACATTTTCTGGTAACCTTACCTTCTCAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675627 127 -  90373283 TATAACAAAGGACCATTGAATAATCATTATAA-TAACTTTATTAACATAGACAACATTTATAAACATAAAGTGCACTGTGCTGAAATTAAAAATTTACTGACATTTTCTGGTAACCTTACCTTCTCAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37493686 122 +  50472720 TACAACAAAGGGCCATTGAATTATCATTACAA-TAACTTTATTAACATAGACAACATTTGCCAACATAAAGTGCACTGTGCAGAAATTAAGAATTTACTGACATTTTCTGGTA-----ACCTTCTCAT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91614232 108 +  98207768 TAGATCAATGGACCACAGAACAATCATTAAGG-TAATTTTATTAATATAG---ATATCTGCAG--ATCAAGTGAATGGTACT--AATGAATAGTTT------------TGGTGACCTCACCCTCTCAT
i mm10.chr16                I 15598 I 903
s canFam3.chr31              28113318 125 +  39895921 TATAACAAGGGACCATTGGATAATCattaaaattaattttattaatataGACAACATGTACAGACATAAAGTGTGCTGTGCTGAAAATAAGGGTTTACT-AGATTTTTTGTTG--TTTATTTTCCCAT
i canFam3.chr31             C 0 C 0
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=178263.000000
s hg38.chr21_GL383581v2_alt     89764 66 +    116689 TGACCAATATGGAAAATGGTTTTGTTCATCTATGTTGCTGTAATGCAGTTAAGCCTCTTACGTCTA
s panTro4.chr21              19593904 66 +  32799110 TGACCAATATGGAAAATGGTTTTGTTCATCTATGTTGCTGTAATGCGGTTAAGCCTCTTGCATCTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34499138 66 +  48394510 TGACCAATATGGAAAATGGTTTTGTTCATCTATGTTACTGTAGTGCAGTTAAGCCTCTTACATCTA
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185179454 66 - 198365852 TGACCAGTATGGAAAATGGTTTTGTTCATCTACGTTGCTGTAATGCAGTTGAGCCTCTTACATCTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179022484 66 - 192294377 TGACCAGTATGGAAAATGGTTTTGTTCATCTACGTTGCTGTAATGCAGTTGAGCCTCTTACATCTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167402964 66 - 180432695 TGACCAGTATGGAAAATGGTTTTGTTCATCTACGTTGCTGTAATGCAGTTACGCCTCTTACatcta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675754 66 -  90373283 TGACCAGTATGGAAAATGGTTTTGTTCATCTACGTTGCTGTAATGCAGTTAAGCCTCTTACATCTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37493808 65 +  50472720 TGACCAATATTAAAAATGGTTTTGTTCATCTATGTTGCTGTAATGCAGTTAGGCCTCTTA-ATCTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28113443 65 +  39895921 TATCCAATATTGAAAATAGTCTTTTGTAT-TACGTTGCTGCAATGCAACTAGGTATCATACATCTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=321089.000000
s hg38.chr21_GL383581v2_alt     89830 172 +    116689 ATTCCCAC-------------tttttttttttttttaagacggag--tcttgc-tctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccacctcctgggttcgtgccattctgctgcctca-gc-ctccccagcagctgggactacaggcgcacaccgccatgctcagctaa
s panTro4.chr21              19593970 172 +  32799110 ATTCCCAC-------------tttttttttttttttaagacggag--tcttgc-tctctcacccaggctggagtgcagtggcgcgatctcagctcactgcaagctccacctcctgggttcatgccattctgctgcctca-gc-ctccccagcagctgggactacaggcgcacgctgccatgctcagctaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34499204 187 +  48394510 ATTCCCACTAttttttttttttttttttttttttttgagatggag--tcttgc-tctgtcacccaggctggagtgtagtggcgcgatctcggctcactgcaagctccacctcccgggttcatgccattctgctgcctaatgcgctccccagcagctgtgactacaggcacacaccgccatgcccagctaa
i ponAbe2.chr21             C 0 I 450
s rheMac3.chr3              185179520 162 - 198365852 ATTTCTAC------------------ttttttttttgagatggag--tcttgc-tgtgtcacccaggctggagtgcagtggcgcgatctcggctcactgccagctccacctcttgggttcacaccattctgcta------gc-ctccccagcatctgggactacaggcgcacgctgccacacctggctaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179022550 162 - 192294377 ATTTCTAC------------------ttttttttttgagatggag--tcttgc-tgtgtcacccaggctggagtgcagtggcgcgatctcggctcactgccagctccacctcttgggttcacaccattctgcta------gc-ctccccagcatctgggactacaggcgcacgccgccacacctggctaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167403030 163 - 180432695 atttctac-----------------tttttttttttgagatggag--tcttgc-tgtgtcacccaggctggagtgcagtggcgcgatctcgggtcactgccagctccacctcttgggttcacaccattctgcta------gc-ctccccagcatctgggactacaggcgcacgccgccacacctggctaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675820 168 -  90373283 ATTTCTAC--------------ttttttttttttttgagatggagaatcttgc-tgtgtcacccaggctggagtgcagtggcgcgatctcggctcactgccagctccacctcttgggttcacaccattctgcta------gc-ctccccagcatctgggactacaggtgcatgctgccacacctggctaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37493873 157 +  50472720 ATTCCCAC--------------Ctttttttttctctgatatggag--tctcgcttttgttgcccaggctggagtgcagtggcacaatctcggctcactgcaaactctgcctcccgggttcaagcagttctcctgcctca-gc-cttcc---------------aaggcacccgccaccatgcctggctga
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e canFam3.chr31              28113508   0 +  39895921 C
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=222822.000000
s hg38.chr21_GL383581v2_alt     90002 138 +    116689 atttttttgta-tttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccgcccgcctgggcctccccaagtgctgggattacaggcatgagccaccgcgcccggccTCGA
s panTro4.chr21              19594142 138 +  32799110 atttttttgta-tttttagtagagaccgggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccgcccgcctgggcctccccaagtgctgggattacaggcatgagccaccacgcccggccTCGA
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185179682 138 - 198365852 ttttttttgtattttttagtagagac-gggtttcactgtgttagccaggatggtcttgagctcctgacctcatgatctgcccgcctcggcctcccaaactgctgggattacaggcatgagctactgcgcccggccTCTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179022712 138 - 192294377 ttttttttgtattttttagtagagac-gggtttcactgtgttagccaggatggtcttgagctcctgacctcatgatctgcccgcctcggcctcccaaactgctgggattacaggcatgagctactgcgcccggccTCTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167403193 136 - 180432695 -tttttttgta-tttttagtagagac-gggtttcactgtgttagtcaggatggtcttgagctcctgacctcatgatctgcccgcctcggcctcccaaactgctgggattacaggcatgagctactgcgcccggcctcta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31675988 137 -  90373283 ttttttttgta-tttttagtagagac-gggttccactgtgttagccaggatggtcttgagctcctgacctcatgatctgcccgcctcggcctcccaaactgctgggattacaggcatgagctactgcgcccggccTCTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37494030 133 +  50472720 ---tttttgta-tttttagtagagatcgggtttcaccatgttggtcaggctggtctacaactcctgaccttgtgatctgcccacctcggcttcccaaagtgctaggattacagacgtgagccactgtgcctggccT--A
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e canFam3.chr31              28113508   0 +  39895921 C
e ponAbe2.chr21              34499391 450 +  48394510 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=447727.000000
s hg38.chr21_GL383581v2_alt     90140 212 +    116689 ATTCCCACTTTTAACAAGAGTCACAAAATTACTGCCTTCTAAAATGTTTTTGGAACTATAGCTC---TTATTAAGCAAC---ATTCCATACTGTTCACAATTTTATTTACAGTGATACTATCATTGTAGAAACCAAATGACAAATCATTCAATAAATTATAATCACATATTATGCCAATTAA-TGCTGCAGCATCTAAGC-TAAAGGCCAAAAATTTCTT
s panTro4.chr21              19594280 212 +  32799110 ATTCCCACTTTTAACAAGAGTCACAAAATTACTGCCTTCTAAAATGTTTTTGGAACTATAGCTC---TTATTAAGCAAC---ATTCCATACTGTTCACAATTTTATTTACGGTGATACTATCATTGTAGAAGCCAAATGACAAATCATTCAATAAATTCTAATCACATATTATGCCAATTAA-TGCTGCAGCATCTAAGC-TAGAGGCCAAAAATTTCTT
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185179820 210 - 198365852 ATTCCCACTTTTAACAAAAGTCACAAAACTACTGCCTTCTAAAATGTTTTTGGAACTATAGCTC---TTATTAAGCAAC---ATTCCATACTGTTCACAATTTTATTTACAGTGATGCTATCATTGTAGAAGTCAAATGACAACTCATTCAATAAA--ATAATCACATACTATGCCAATTAA-TGCTGCAGCATCTAAGC-TAAAGGCCCAAAAtttctt
i rheMac3.chr3              C 0 I 284
s macFas5.chr3              179022850 210 - 192294377 ATTCCCACTTTTAACAAAAGTCACAAAACTACTGCCTTCTAAAATGTTTTTGGAACTATAGCTC---TTATTAAGCAAC---ATTCCATACTGTTCACAATTTTATTTACAGTGATGCTATCATTGTAGAAGTCAAATGACAACTCATTCAATAAA--ATAATCACATACTATGCCAATTAA-TGCTGCAGCATCTAAGC-TAAAGGCCCAAAAtttctt
i macFas5.chr3              C 0 I 292
s papAnu2.chr3              167403329 210 - 180432695 attCCCACTTTTAACAAAAGTCACAAAACTACTGCCTTCTAAAATGTTTTTGGAACTATAGCTC---TTATTAAGCAAC---ATTCCATACTGTTCACAATTTTATTTACAGTGATGCTATCATTGTAGAAGTCAAATGACAACTCATTCaataaa--ataatcacatattATGCCAATTAA-TGCTGCAGCATCTAAGC-TAAAGgcccaaaattttct
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31676125 210 -  90373283 ATTCCCACTTTTAACAAAAGTCACAAAACTACTGCCTTCTAAAATGTTTTTGGAACTATAGCTC---TTCTTAAGCAAC---ATTCCATACTGTTCACAATTTTATTTACAGTGATGCTATCATTGTAGAAGTCAAAGGACAACTCATTCAATAAA--ATAATCACATATTATGCCAATTAA-TGCTGCAGCATCTAAGC-TAAAGGCCCAAAAtttctt
i chlSab2.chr2              C 0 I 302
s calJac3.chr21              37494163 212 +  50472720 TTTCCCACATTTAACAAGAGTCACAAAATTACTGCCTTCTAAAGTGTTTTTGGAACTATAGCTCTTATTATTAAGCTAC---ATTTCATACTGTTCAC--TTTTACTTATAGTGATACTACCATTGTAGAAGCCAAATGACAACTCATTAAATAAA--ATAATCACATATTATGCCAATTAA-TGCTGCAGCACCTAAGCGGAAAGGTCCAAAATTTCCT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28113508 211 +  39895921 ATTCCCATTCTTAACAAGATTCACAGAATCATAGCCTTCTAAAATG-TTTTAGAACTATAGTTC---TCAGTATGTAGCTCTATTTCATACTGTTCACAATTTCATTTACAGTAATGCCATCATTGTAGAAGCCACAT---AACTCATTCAGTAAA--ATAATCACATATTATACCAATTAATTACCCCATCATCCAAGTAGAAAGTCCTGAAATTTCCT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=43178.000000
s hg38.chr21_GL383581v2_alt     90352 27 +    116689 TTTGAAGGTGTAGTTTTGTTTGTTGTT
s panTro4.chr21              19594492 27 +  32799110 TTTGAAGGTGTAGTTTTGTTTGTTGTT
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185180314 27 - 198365852 TTTGAAGGTGTAGTTTTGTTTGTTGTT
i rheMac3.chr3              I 284 C 0
s macFas5.chr3              179023352 27 - 192294377 TTTGAAGGTGTAGTTTTGTTTGTTGTT
i macFas5.chr3              I 292 C 0
s papAnu2.chr3              167403539 16 - 180432695 -tt----------tttttttttttgtt
i papAnu2.chr3              C 0 I 894
s chlSab2.chr2               31676637 27 -  90373283 TTTGAAGGTGTAGTTTTGTTTGTTGTT
i chlSab2.chr2              I 302 C 0
s calJac3.chr21              37494375 27 +  50472720 TTTGAAGGTGTAGTTTTATTTGTTGTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28113719 21 +  39895921 TTGGAAGATGTAGTTTTACTT------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=149856.000000
s hg38.chr21_GL383581v2_alt     90379 110 +    116689 TTAACTATCACACATTTTACAAAATAACACTTTCTTCCAAAATGCAGGTGGTGAGTCCCTCACTTCTGAACCACTTCTGTAACACAGCACTCTGGATTAAAGAAGGAAAc
s panTro4.chr21              19594519 110 +  32799110 TTAACTATCACACATTTTACAAAATAACACTTTCTTCCAAAATGCAGGTGGTGAGTCCCTCACTTCTGAACCACTTCTGTAACACAGCACTCTGGATTAAAGAAGGAAAc
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185180341 110 - 198365852 TTAACTATCACACATTGTACAAAATAACACGTGCTTCCAAAATGCAGGTGGTGAGTACCTCACTTCTGAACCACTTCTGTAACACAGGACTCTGGATTAAAGAAGGAAAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179023379 110 - 192294377 TTAACTATCACACATTGTACAAAATAACACGTGCTTCCAAAATGCAGGTGGTGAGTACCTCACTTCTGAACCACTTCTGTAACACAGGACTCTGGATTAAAGAAGGAAAC
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31676664 110 -  90373283 TTAACTATCACACATTGTACAAAATAACACGTGCTTCCAAAATGCAGGTGGTGAGTACCTAACTTCTGAACCACTTCTGTAACTCAGGACTCTGGATTAAAGAAGGAAAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37494402  77 +  50472720 TTAACTCTCACACGTTTTACAAAATAACACATTCTTCCAAAATGCAGGTGGCGAGTAC---------------------------------CTGGATTAAAGAAGGAAAT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28113740 106 +  39895921 --AACCATCACGCACTTTACAAAATAACTTGTTCTTTCAAAATCAGAGTGGCAAGTGC--CACTTCTCAACCGCATCCATAATCCAGCACTCTGAGTTAAATAAGGAAAC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e papAnu2.chr3              167403555 894 - 180432695 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=337.000000
s hg38.chr21_GL383581v2_alt     90489 2 +    116689 --ac-
s panTro4.chr21              19594629 2 +  32799110 --ac-
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185180451 2 - 198365852 --AC-
i rheMac3.chr3              C 0 I 583
s macFas5.chr3              179023489 2 - 192294377 --AC-
i macFas5.chr3              C 0 I 583
s papAnu2.chr3              167404449 2 - 180432695 --at-
i papAnu2.chr3              I 894 C 0
s chlSab2.chr2               31676774 2 -  90373283 --AC-
i chlSab2.chr2              C 0 I 582
s calJac3.chr21              37494479 2 +  50472720 --AC-
i calJac3.chr21             C 0 I 425
s canFam3.chr31              28113846 5 +  39895921 AGATC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=10749.000000
s hg38.chr21_GL383581v2_alt     90491 6 +    116689 tgcact
s panTro4.chr21              19594631 6 +  32799110 tgcact
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185181036 6 - 198365852 tgcact
i rheMac3.chr3              I 583 C 0
s macFas5.chr3              179024074 6 - 192294377 tgcact
i macFas5.chr3              I 583 C 0
s papAnu2.chr3              167404451 6 - 180432695 tgcact
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31677358 6 -  90373283 tgcact
i chlSab2.chr2              I 582 C 0
s canFam3.chr31              28113851 6 +  39895921 TGCTCT
i canFam3.chr31             C 0 I 141
e mm10.chr16                 91614340 903 +  98207768 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e calJac3.chr21              37494481 425 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=46293.000000
s hg38.chr21_GL383581v2_alt     90497 38 +    116689 ccagcctgggcaacaacagcaaaactccatttcaaaaa
s panTro4.chr21              19594637 38 +  32799110 ccagcctgggcaacaacagcaaaactccatttcaaaaa
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185181042 38 - 198365852 ccagcccaggcaatgagagtgaaactccatttcaaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179024080 38 - 192294377 ccagcccaggcaatgagagtgaaactccatttcaaaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167404457 38 - 180432695 ccagcccaggcaatgagagtgaaactccatttcaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31677364 38 -  90373283 ccagcccaggcaatgagagtgaaactccatttcaaaaa
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e canFam3.chr31              28113857 141 +  39895921 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e calJac3.chr21              37494481 425 +  50472720 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=3692.000000
s hg38.chr21_GL383581v2_alt     90535 3 +    116689 aac
s panTro4.chr21              19594675 3 +  32799110 aac
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185181080 3 - 198365852 aaa
i rheMac3.chr3              C 0 I 1
s macFas5.chr3              179024118 3 - 192294377 aaa
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167404495 3 - 180432695 aaa
i papAnu2.chr3              C 0 I 1
s chlSab2.chr2               31677402 3 -  90373283 aaa
i chlSab2.chr2              C 0 I 1
s calJac3.chr21              37494906 3 +  50472720 AAA
i calJac3.chr21             I 425 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e canFam3.chr31              28113857 141 +  39895921 I
e ponAbe2.chr21              34499391 450 +  48394510 I
e nomLeu3.chr25              20022570 100 +  32716333 I

a score=219456.000000
s hg38.chr21_GL383581v2_alt     90538 98 +    116689 aa--aGTGGCCACTGgaccaggcacagtggctcgcgcctgtaatcccagcactttgggaggttaaggcaggtggatcacctgaagtcaggagttcgagac
s panTro4.chr21              19594678 98 +  32799110 aa--aGTGGCCACTGgaccaggcacggtggctcgcgcctgtaatcccagcactttgggaggttaaggcaggtggatcacctgaagtcaggagttcgagac
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20022670 98 +  32716333 AA--AGTGGACACTGgaccgggcatggtggctcacgcctgtaatcccagcactttgggaggctaaggcaggtggatcacctgaggtcaggagttcgagac
i nomLeu3.chr25             I 100 C 0
s rheMac3.chr3              185181084 97 - 198365852 aa--aGTGGACACTGTACT-ggcatggtggctcacgcctgtaatcctggtactttgggaggctaaggcgggtggatcacctgaggtcaggagttcgagac
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              179024122 97 - 192294377 aa--aGTGGACACTGTACT-ggcatggtggctcacgcctgtaatcctggtactttgggaggctaaggcgggtggatcacctgaggtcaggagttcgagac
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167404499 97 - 180432695 aa--agtggacactgtact-ggcatggtggctcacgcctgtaatcctggtactttgggaggctaaggcaggtggatcacctgaggtcaggagttcgagac
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31677406 99 -  90373283 aaaGAGTGGACACTGTACC-ggcatggtggttcacgcctataatcctggtactttgggaggctaaggcgggtggatcacctgaggtcaggagttcgagac
i chlSab2.chr2              I 1 C 0
s calJac3.chr21              37494909 98 +  50472720 AA--AGTGGACACTGggccaggcacagtggctcatgcctataatcccagcactttgggaggctaaggtggatggatcgcctgaggtcaggagtttgagac
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e canFam3.chr31              28113857 141 +  39895921 I
e ponAbe2.chr21              34499391 450 +  48394510 I

a score=96059.000000
s hg38.chr21_GL383581v2_alt     90636 40 +    116689 cagcctggc-caaaatggtgaaaccccatctctactaaaaa
s panTro4.chr21              19594776 40 +  32799110 cagcctggc-caaaatggtgaaaccccatctctactaaaaa
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20022768 40 +  32716333 cagcctggc-caaaatgaagaaaccccatctctactaaaaa
i nomLeu3.chr25             C 0 I 3
s rheMac3.chr3              185181181 40 - 198365852 cagcctggc-caaaatggtgaaacctcatctctactaaaaa
i rheMac3.chr3              C 0 I 2
s macFas5.chr3              179024219 40 - 192294377 cagcctggc-caaaatggtgaaacctcatctctactaaaaa
i macFas5.chr3              C 0 I 2
s papAnu2.chr3              167404596 40 - 180432695 cagcctggc-caaaatggtgaaaccccatctctactaaaaa
i papAnu2.chr3              C 0 I 2
s chlSab2.chr2               31677505 40 -  90373283 cagcctggc-caaaatagtgaaaccccatctctactaaaaa
i chlSab2.chr2              C 0 I 3
s calJac3.chr21              37495007 33 +  50472720 cagcctggc-caaattggtgaaaccctgtctcta-------
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28113998 41 +  39895921 CAAACTGGCACAAAATTCAGACACCTTTTCCTTTATGAAAA
i canFam3.chr31             I 141 C 0
e mm10.chr16                 91614340 903 +  98207768 I
e ponAbe2.chr21              34499391 450 +  48394510 I

a score=429495.000000
s hg38.chr21_GL383581v2_alt     90676 192 +    116689 aaataaaaattggctgggcgtggt------gacgggcacctctaatccc------------------------agctacttgggaggctgaggtagg----agaatcactt----gaacccaggaggcggaggttgcagtgag---------------------ccaagattgcacc-----------------attgcactccagcctgggcaacaagagtgaaactccatctc--------aaaaaaaaaaaaaaaaGCGGACACTGGAGTTTT
s panTro4.chr21              19594816 186 +  32799110 aaataaaaattagctgggcgtggt------gacgggcacctctaatccc------------------------agctacttgggaggctgaggtagg----agaatcactt----gaacccgggaggtggaggttgcagtgag---------------------ccaagattgcacc-----------------attgcactccagcctgggcaacaagagtgaaactccatctc--------------aaaaaaaaaaGCGGACACTGGAGTTTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34499841 194 +  48394510 aaatgaaaattagctgggcgtggt------gacgggcacctccaatccc------------------------agctacttgggaggctgaggtagg----acaatcactt----gaacccaggaggcagaggttgcagtgag---------------------ccatgatcgcacc-----------------attgcactccagcctgggcaatgagagtgaaactccatctc------AAAAAAAAAAAAAAAAAAGTGGACACTGGAGTTTA
i ponAbe2.chr21             I 450 C 0
s nomLeu3.chr25              20022811 189 +  32716333 atataaaaattagctgggcgtggt------ggtgggcacctctaatccc------------------------agctacttgggaggctgaggtagg----agaatcactt----gaacccaggaggcggaggttgcagtgag---------------------ccaagattgcacc-----------------attgcactccagcctgggcaacaagagtgaaattccatctc-----------aaaaaaaaaaaaaGTAGACACTGGAGTTTA
i nomLeu3.chr25             I 3 C 0
s rheMac3.chr3              185181223 187 - 198365852 atataaaaattagc------tggt------ggcaggcacctctgatctc------------------------agctacttagggggctgaggtagg----agaatcactt----gaacccaggaggcagaggttgcagtgag---------------------ccaagattgcactnnnnnnnnnnnnnnnnnnntg------------------------aaaaatccatcccaaaaaaaaaaaaaaaaaaaaaaaaGTGGACACTGGAGTTTA
i rheMac3.chr3              I 2 C 0
s macFas5.chr3              179024261 190 - 192294377 atataaaaattagc------tggt------ggcaggcacctctgatctc------------------------agctacttagggggctgaggtagg----agaatcactt----gaacccaggaggcagaggttgcagtgag---------------------ccaagattgcact-----------------attgcaatccagcctgggcaacaagagtgaaactccatctc----aaaaaaaaaaaaaaaaaaaaGTGGACACTGGAGTTTA
i macFas5.chr3              I 2 C 0
s papAnu2.chr3              167404638 190 - 180432695 atataaaaattagc------tggt------ggcaggcacctctaatctc------------------------agctacttaggaggctgaggtagg----agaatcactt----gaacccaggaggcagaggttgcagtgag---------------------ccaagattgcact-----------------attgcaatccagcctgggcaacaagagtgaaactccatctc----aaaaaaaaaaaaaaaaaaaagtggacactGGAGTTTA
i papAnu2.chr3              I 2 C 0
s chlSab2.chr2               31677548 185 -  90373283 atataaaaattagc------tggt------ggcaggcacctctaatctc------------------------agctacttaggaggctgaggtagg----agaatcactt----gaacccaggaggcagaggttgcagtgag---------------------tcaagattgcact-----------------attgcaatccagcctgggcaacaagagtgaaactccatctc---------aaaaaaaaaaaaaaaGTGGACACTGGAGTTTA
i chlSab2.chr2              I 3 C 0
s calJac3.chr21              37495040 136 +  50472720 ------------------------------gggaggcacctctaatttc------------------------aactacttgggaggctgaggcagg----agaattcctt----gaacccaggaggtggatgttgcagtgag---------------------cagagatcatgcc-----------------attgaactccagcctgggtgac----------------------------------------aaAGTGGACACTGGGGTTTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28114039 222 +  39895921 ---------------------GGTTCCTAAGACAGGAAATTATATCCCTAAATTGAGATTTTCACATGGAAAAAGCCTCTGGGGAATCTGATAGATGACAAAGAAAGGCTTCAGGGAGACTTAGAGATGAAGTCAGAAGTGAAATCTTAAGTTTCCATTGATCCCAAGGATTTTTTT-----------------ATTATTTTACCTCCAAAAGGGCAGAAAATACACCCAAACTC----------------TTTTAAAAGTGGCCACTGGAGTCTA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91614340 903 +  98207768 I

a score=987335.000000
s hg38.chr21_GL383581v2_alt     90868 304 +    116689 TTTCTAGAATTGCTAAATCAACTAGCTTCACT----GATTTCTGCAGCCAATAAACCATCAAGTT-AGACAGGAAAAAGTAGAATCTGGATGTTTGGTG-------TGTTTTTCATTCAGTACCCACAGAGAAGGCCCTCATAAAAA--GAAAAGTACAGTAATTCCAGTAGGCTA--ATTTTCTGATCTTAATATTTCCACCCATATGGAGGGTGTCCCAAAAGTCTTGGAACGGTTTT-GAGCCTTAATAAGTTCAGGAATATAAATCCAGCAAGCTCGTTTAAAAAAAAAA-----GTCATC----TGGAGG--TTTAATTGGTTAAAT
s panTro4.chr21              19595002 304 +  32799110 TTTCTAGAATTGCTAAATCAACTAGCTTCACT----GATGTCTGCAGCCAATAAACCATCAAGTT-AGACAGGAAAAAATAGAATCTGGATGTTTGGTG-------TGTTTTTCATTCAGTACCCACAGAGAAGGCCCTCATAAAAA--GAAAAGTACAGTAATTCCAGTAGGCTA--ATTTCCTGATCTTAATATTTCCACCCATATGGAGGGTGTCCCAAAAGTCTTGGAACGGTTTT-GAGCCTTAATAAGTTCAGGAATATAAATCCAGCAAGCTCGTTTAAAAAAAAAA-----GTCATC----TGGAGG--TTTAATTGGTTAAAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500035 302 +  48394510 TTTCTAGAATTGCTAAATCAACTAGCTTCACT----GATTTCTGCAGCCAATAAACCATCGAGTT-AGACAGGAAAAAGTAGAATCTGGATGTTTGGTG-------TGTTTTTCATTCAGTACCCACAGAGAAGGCCCTCATAAAAC--AAAAAGTACAGTAATTCCAGTGGGCTA--ATTTCCTGATCTTAATATTTCCACCTATATGGAGGATGTCCCAAAAGTCTTGGAACGGTTTT-GAGCCTTAATAAGTTCAGGAGTATAAATCCAGCAAGCTCGTTT--AAAAAGAA-----GTCATC----TGGAGG--TTTAATTGGTTAAAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20023000 303 +  32716333 TTTCTAGAATTGCTAAATCAACTAGCTTCACT----GATTTCTGCAGCCAATAGACCATCAAGTT-AGACAGGAAAAAGTAGAATCTGCATGTTTGGTG-------TGTTTTTCATTCAGTACCCACAGAGAAGGCCCTCATAAAAA--GAAAAGTACAGTAATTCCAGTAGGCTA--ATTTCCTGATCTTAATATTTCCACCCATATGGAGGGTGTCCCAAAAGTCTTGGAACGGTTTT-GAGCCTTAATAAGTTCAGGAGTATAAATCCAGCAAGCTCGTTT-AAAAAAAAA-----GTCATC----TGGAGG--TTTAATTGGTTAAAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185181410 284 - 198365852 TTTCTAGAATTGCTAAATCACCTAGCTTCACT----GATTTCTGCTGCCAATAAACCATCAAGTT-AGACAGGAAAAAGTAGAATCTGCATGGTTGGTA-------TGTTTTTCATTCAGTACCCACAGAGAAGGCCCTCATAAAAA--GAAAAGTGCAGTAATTCCAGTAGGCTA------------------ATTTCCACCCATATGGAGAGTGTCGCAAAAGTCTTGGAACAGTTTT-GAGCCTTAATAAGCTCAGGGGTATAAATCCAGCAAACGTGTTT----AAAAAA-----ATCATC----TGGAGG--TTTAATTGGTTAAAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179024451 284 - 192294377 TTTCTAGAATTGCTAAATCACCTAGCTTCACT----GATTTCTGCTGCCAATAAACCATCAAGTT-AGACAGGAAAAAGTAGAATCTGCATGGTTGGTA-------TGTTTTTCATTCAGTACCCACAGAGAAGGCCCTCATAAAAA--GAAAAGTGCAGTAATTCCAGTAGGCTA------------------ATTTCCACCCATATGGAGAGTGTCGCAAAAGTCTTGGAACAGTTTT-GAGCCTTAATAAGCTCAGGGGTATAAATCCAGCAAACGTGTTT----AAAAAA-----ATCATC----TGGAGG--TTTAATTGGTTAAAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167404828 284 - 180432695 TTTCTAGAATTGCTAAATCAACTAGCTTCATT----GATTTCTGCTGCCAATAAACCATCAAGTT-AGACAGGAAAAAGTAGAATCTGCATGGTTGGTA-------TGTTTTTCATTCAGTACCCACAGAGAAGGCcctcataaaaa--gaaaagtgcagTAATTCCAGTAGGCTA------------------ATTTCCACCCATATGGAGAGTGTTACAAAAGTCTTGGAACAGTTTT-GAGCCTTAATAAGCTCAGGGGTATAAATCCAGCAAAcgtgttt----aaaaaa-----atcatc----tggaGG--TTTAATTGGTTAAAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31677733 285 -  90373283 TTTCTAGAATTGCTAAATCAACTAGCTTCACT----GATTTCTGCTGCCAATAAACCATCAAGTT-AGACAGGAAAAAGTAGAATCTGCATGGTTGGTG-------TGTTTTTCATTCAGTACCCACAGAAAAAGCCCTCATAAAAA--GAAAAGTGCAGTAATTCCAGTAGGCTA------------------ATTTCCACCCATATGGAGAGTGTCGCAAAAGTCTTGGAACAGTTTT-GAGCCTTAATAAGCTCAGGGGTATAAATCTAGCAAACGTGTTT---AAAAAAA-----ATCATC----TGGAGG--TTTAATTGGTTAAAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37495176 292 +  50472720 TTTCTAGAATTACTAAATCAACCAGCTTCACT----GATTTCCGCAGCCAAGAAACCATCAAGTT-AGACAGGAAAGAGTAGAACCTAGATGTTTGG---------TGTTTTTCAT---------GGAGAGAAGGCCCTCATAAAAA--GAAAAGTGCAGTAATTTCCGTAGGCTA--ATTTCCTGATCTTACTATTTCCACCCATATGGAGGGTGTCCCAAAAGTCTTGGAACAGTTTT-GAGCCTTAATAAGCTCAGGAGTATAAATACAGCAAACCTGTTA-AAAAAATAC-----ATCATT----TGGAGG--TTTAATTGGTTAAAT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91615243 280 +  98207768 TTTTCAGAACTTCTAAATCAATCAGTTTAACT----GACTTCTGTGGCCAGTGGGTCAC--AGTT-AG----------------CCTACCTACTTGCCC-------TTTTCTTTGTCCAGTGCCCACAGGGAAGGCCTTTGTAAA----------TACAGGAGCCCCAGAAGTCTATTTTTTCCTGACTTTCA-GTTTTAGAGCACCTAGCAGGTGTTTGAAAAGCCTTCCCACAGTTTTAGAGCTTTAATAAGCTCTGGAATATA---CCAGAGGAAACCTGC----AAAAACTACCTGTTGTC----TGGAGatctttaatttgttacat
i mm10.chr16                I 903 I 479
s canFam3.chr31              28114261 307 +  39895921 CTTCTAGAACAGCTATATTAACTAGCTTGGCTGATGGATCTCCATAGCTAAGATA--ATGAAGTTAAGGCAGGAAAAAGTACAACCCAGAAATTTTGTGGGTTTTTGGTTTTTTATTCAGTACCCACAG---AGGTCTTTATAAAAAAGGAAGAGTGCAGTAACTCTATTGGGCTA--ATTTCCTGATCATAACATTTCCACCCACAT----AGTGTCCC--AAGTCTTAGAATGGTTGT-AAGCTTTAATAACCTCAAGTGTATAAATGCAGCAAGCTTGCAA----AAAACA-----TGCATCATTGTGAAAG--TTTGCTTGCCTATGG
i canFam3.chr31             C 0 C 0

a score=745055.000000
s hg38.chr21_GL383581v2_alt     91172 237 +    116689 TTCATAACACTTCAGTTTTGTGACTTTTGATAACATATTTTTCGGTTTCCC------------TGTTGTTTAAGTACCTATGTTTGAAAATGGCAACAGTCACTGCTTTTAAGTTAGTTATTACAGCTCAAAACTGCACCAAAACTTTTGGAAT-TCATGTATGATTCCTAAGTCAGAAACCTGATCCTAGCTCATTTCACTGGATGACCAACATTTTAACACTAGAATGAACTAAATTATTTTCTTTAG
s panTro4.chr21              19595306 240 +  32799110 TTCATAACACTTCAGTTTTGTGACTTTTGATAACATATTTTTCGGTTTCCC---------TGTTGTTGTTTAAGTACCTATGTTTGAAAATGGCAAGAGTCACTGCTTTTAAGTTAGTTATTACAGCTCAAAACTGCACCAAAACTTTTGGAAT-TCATGTATGATTCCTAAGTCAGAAAACTGATCCTAGCTCATTTCACTGGATGACCAACATTTTAACACCAGAATGAACTAAATTATTTTCTTTAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500337 240 +  48394510 TTCATAACACTTCAGTTTTGTGACTTTTGATAACGTATTTTTCGGTTTCCC---------TGTTGTTGTTTAAGTACCTATGTTTGAAAATGGCAACAGTCACTGCTTTTAAATTAGTTATTACAGCTCAAAACTGCACTAAAACTTTTGGAAT-TCATGTATGATTCCTAAGTCAGAAACCCGATCCTAGCTCATTTCACTGGATGACCAACATTTTAACACTGGAATGAACTAAATTATTTTCTTTAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20023303 240 +  32716333 TTCATTACACTTCAGTTTTGTGACTTTTGATAACATATTTTTTGGTTTCCC---------TATTGTTGTTTAAGTATCTATATTTGAAAATGGCAACAGTCACTGCTTTTAAGTTAGTTATTACAGCTCAAAACTGCACTAAAACTTTTGGAAT-TCATGTATGATTCCTAAGTCAGAAACCTGATCCTAGCTCATTTCACTGGATGACCAATATTTTAACACAGGAATGAACTAAATTATTTTCTTTAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185181694 232 - 198365852 TTCATTACACTTAAGTTTTGTGACTTTTGATAACATATTTTTCGGTTTCCC---------TGTTG----TTAAGTACCTATGTTTGAAAATGGCAACAGTGACTGCTTTTAAGTTAGTTATTACAGCTCAAAACTGCACTAAAACTTTTGGAAT-TTGTGTATGATTCCTA----AGAAACCTGATCCTAGCTCATTTCACTAGATGACTGACACTTTAACACTGGAATGAACTAAATTATTTTCTTTAG
i rheMac3.chr3              C 0 I 3
s macFas5.chr3              179024735 232 - 192294377 TTCATTACACTTAAGTTTTGTGACTTTTGATAACATATTTTTCGGTTTCCC---------TGTTG----TTAAGTACCTATGTTTGAAAATGGCAACAGTGACTGCTTTTAAGTTAGTTATTACAGCTCAAAACTGCACTAAAACTTTTGGAAT-TCGTGTATGATTCCTA----AGAAACCTGATCCTAGCTCATTTCACTAGATGACTGACACTTTAACACTGGAATGAACTAAATTATTTTCTTTAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167405112 232 - 180432695 TTCATTACACTTAAGTTTTGTGACTTTTGATAACATATTTTTCGGTTTCCC---------TGTTG----TTAAGTACCTATGTTTGAAAATGGCAACAGTGACTGCTTTTAAGTTAGTTATTACAGCTCAAAACTGCACTAAAACTTTTGGAAT-TCGTGTATGATTCCTA----AGAAACCTGATCCTAGCTCATTTCACTAGATGACTGACACTTTAACACTGGAATgaactaaattattttctttag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31678018 236 -  90373283 TTCATTACACTTCAGTTTTGTGACTTTTGATAACATATTTTTCGGTTTCCC---------TGTTG----TTAAGTACCTATGTTTGAAAATGGCAACAGTGACTGCTTTTAAGTTAGTGATTACAGCTCAAAACTGCACTAAAACTTTTGGAAT-TCGTGTATGATTCCTAAGTCAGAAACCTGATCCTAGCTCATTTCACTAGATGACTGACACTTTAACACTGGAATGAACTAAATTATTTTCTTTAG
i chlSab2.chr2              C 0 I 3
s calJac3.chr21              37495468 228 +  50472720 TTCATTACACTTCAGTTTTGCGACTTTTGATAACATATTTTTCGGTTTCCA---------TGTTG---TTTAAGTACTTATGTTTGAAAATGGCAACAATAACTGCTTTTAAGTTAGTTATTACAGCTCGAAACTGCACTAACACTTTCACAAT-ACATGTATGATTCCTAAGTCAGAAAATTGATCCTAGCCCATTTCACTGGATGACTGACATTTAAACACTGGAATGGAC---------TTCTTTAG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28114568 233 +  39895921 CCCATACTTCCTTAGTTTTGTGAC-TTTGAGAATGCTTTTTAAGGTTTGCTTTTGATTGTTGTTGTTGGTTCAGTAACTATTTTTGAAGATGGCA------ACTGTTTTC---TGAGTTATTAGAACTGAAAATTGCACTAAGACTTTTGGAATACCCTTTATGATTCCCA-GTCTGAGTCCCTGACCTAAATCATTTCACCTGG-GGCTGACATTCATGCGCCGGAATGGA-----TTGTTTTCCTAGA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I

a score=-20.000000
s hg38.chr21_GL383581v2_alt     91409 1 +    116689 A
s panTro4.chr21              19595546 1 +  32799110 A
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500577 1 +  48394510 A
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20023543 1 +  32716333 A
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179024967 1 - 192294377 T
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167405344 1 - 180432695 t
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37495696 1 +  50472720 A
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28114801 1 +  39895921 A
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e rheMac3.chr3              185181926 3 - 198365852 I
e chlSab2.chr2               31678254 3 -  90373283 I

a score=2727.000000
s hg38.chr21_GL383581v2_alt     91410 2 +    116689 AG
s panTro4.chr21              19595547 2 +  32799110 AG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500578 2 +  48394510 AG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20023544 2 +  32716333 AG
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179024968 2 - 192294377 AG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167405345 2 - 180432695 ag
i papAnu2.chr3              C 0 C 0
s canFam3.chr31              28114802 2 +  39895921 AT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e rheMac3.chr3              185181926 3 - 198365852 I
e calJac3.chr21              37495697 0 +  50472720 C
e chlSab2.chr2               31678254 3 -  90373283 I

a score=3242.000000
s hg38.chr21_GL383581v2_alt     91412 4 +    116689 TTTC
s panTro4.chr21              19595549 4 +  32799110 TTTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500580 4 +  48394510 TTTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20023546 4 +  32716333 TTTC
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28114804 4 +  39895921 TCTC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e rheMac3.chr3              185181926 3 - 198365852 I
e calJac3.chr21              37495697 0 +  50472720 C
e chlSab2.chr2               31678254 3 -  90373283 I
e papAnu2.chr3              167405347 0 - 180432695 C
e macFas5.chr3              179024970 0 - 192294377 C

a score=99525.000000
s hg38.chr21_GL383581v2_alt     91416 199 +    116689 AGTTATTTTTggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaa-ggggggcggatcatgaggtcaagagatcgagaccatcctgg-ctaacatggtgaaaccccatctctattaaaaatataaaaattaggccgggcatggtggctcaagcccgtaatcccagcactttgggaggccaaggcag
s panTro4.chr21              19595553 199 +  32799110 AGTTATTTTTggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccaa-ggggggcggatcatgaggtcaagagatcgagaccatcctgg-ccaacatggtgaaaccccatctctattaaaaatataaaaaTTAggccgggtgtggtggctcaagctcataatcccagcactttgggaggccaaggcag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500584 200 +  48394510 AGTTATTTTTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaagggggggcggatcatgaggtcaagagatcgaaaccatcctgg-ccaacatggtgaaaccccatctctattaaaaatataaaaattaggccgggagtggtggctcaagcctgtaatcccagcactttgggaggccgaggcag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20023550 201 +  32716333 AGTTATTTCTggccgggcacggtggctcatgcctgtaatcccaacactttgggaggccgagcgggggcggatcatgaggtgaagagatcgagaccaccctggcccaacatggtgaaaccccgtctctattaaaaatttaaaaattagcccgggtgtggtggctcaagcctgtaatcacagcatttcgggaggccgaggcag
i nomLeu3.chr25             C 0 M 780
e mm10.chr16                 91615523 479 +  98207768 I
e canFam3.chr31              28114808   0 +  39895921 C
e rheMac3.chr3              185181926   3 - 198365852 I
e calJac3.chr21              37495697   0 +  50472720 C
e chlSab2.chr2               31678254   3 -  90373283 I
e papAnu2.chr3              167405347   0 - 180432695 C
e macFas5.chr3              179024970   0 - 192294377 C

a score=5540.000000
s hg38.chr21_GL383581v2_alt     91615 20 +    116689 gtggatcAtgaggtcagggg
s panTro4.chr21              19595752 20 +  32799110 gtggatcatgaggtcagggg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500784 20 +  48394510 gtggatcacGAGGTCAGGGG
i ponAbe2.chr21             C 0 I 152
e mm10.chr16                 91615523 479 +  98207768 I
e canFam3.chr31              28114808  0 +  39895921 C
e rheMac3.chr3              185181926  3 - 198365852 I
e calJac3.chr21              37495697  0 +  50472720 C
e chlSab2.chr2               31678254  3 -  90373283 I
e papAnu2.chr3              167405347  0 - 180432695 C
e macFas5.chr3              179024970  0 - 192294377 C
e nomLeu3.chr25              20023751 780 +  32716333 M

a score=65463.000000
s hg38.chr21_GL383581v2_alt     91635 255 +    116689 tttgagaccatcctggccaacatggtgaaaccccgtctctacaaaaaatacaaaaataggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtggcaggcgcctgtaatcccagctactcaggaggctgaggctggagaatgg
s panTro4.chr21              19595772 255 +  32799110 tttgagaccatcctggccaacatggtgaaaccctgtctctacaaaaaacacaaaaataggccaggcacggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggccggcacctgtagtcccagctacttgggaggctgaggctggagaatgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34500956 254 +  48394510 tttgagaccatcctggccaacatggtgaaaccccatctctattaaaaatat-aaaataggccgggagcggtggctcaaccctgtaatcccagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggccggagcctgtggtcccagctactcaggaagctgaggcaggagaatgg
i ponAbe2.chr21             I 152 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e canFam3.chr31              28114808   0 +  39895921 C
e rheMac3.chr3              185181926   3 - 198365852 I
e calJac3.chr21              37495697   0 +  50472720 C
e chlSab2.chr2               31678254   3 -  90373283 I
e papAnu2.chr3              167405347   0 - 180432695 C
e macFas5.chr3              179024970   0 - 192294377 C
e nomLeu3.chr25              20023751 780 +  32716333 M

a score=136076.000000
s hg38.chr21_GL383581v2_alt     91890 270 +    116689 cgtgaacccaggaggtggagcttgcagtgagccgagatcgcgccactgcactccagc-ctgggc-gacagagtgagactctgtctcaaaaaaaaag-------aaaacaaaatacaaaaatagccgggtatggtggtgtgtgcctataatcccagctattcgggagtctgaggcaggataatcacttgaacctgggaagcagaggttgcagtgagcctagattgtgccattgcactccagcctgggtgacagagcgagacgccgtctc------aaaaaaaaaGG
s panTro4.chr21              19596027 273 +  32799110 cgtgaacccaggagatggagcttgcagtgagccaagatcgcgccactgcactccagc-ctgggc-gacagagtgagactctgtctcaaaaaaaaag---aa--aaaaaaaaatacaaaaatagccgggtgtggtggtgtgtgcctgtaatcccagctattcgggagtctgaggcaggagaatcacttgaacctgggaagcagaggttgcagtgagcctagattgtgccattgcactccagcctgggtgacagagcgagacgccgtctc-----aaaaaaaaaaGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34501210 276 +  48394510 cgtgaacctgggaggcggagcttgcagtgagccgagatcgcaccactgcactccagc-ctgggt-gacagagtgagactctgtctcaaaaaaaaaaagaaa--aaaaaaaaatacaaaaatagccgagtgtggtggtgtgtgcctgtaatcccagctattcgggagtctgaggcaggagaatcacttgaacctgggaagcagaggttgcagtgagcctagattgtgtcattgcactccagcctgggcgacagagcaagacaccgtctc-----aaaaaaaaaaGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20024531 285 +  32716333 catgaacccaggaggcagagcttgcagtgagccgagattgcgccactgcactccagctctgggtaaacagagtgagactctgtctcaaaaaaaaaaaaaaaggaaaaaGaaatacaaaaatagccgggtgtggtggtgtgtccctgtaatcccagctattcgggagtccgaggcaggagaatcacttgaacctgggaagcagaggttgcagtgagcctagattgtgccattgcactccagcctgggcaacagagcgagacgccgtttcaaaaaaaaaaaaaaaGG
i nomLeu3.chr25             M 780 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e canFam3.chr31              28114808   0 +  39895921 C
e rheMac3.chr3              185181926   3 - 198365852 I
e calJac3.chr21              37495697   0 +  50472720 C
e chlSab2.chr2               31678254   3 -  90373283 I
e papAnu2.chr3              167405347   0 - 180432695 C
e macFas5.chr3              179024970   0 - 192294377 C

a score=6026.000000
s hg38.chr21_GL383581v2_alt     92160 7 +    116689 AGTTTCA
s panTro4.chr21              19596300 7 +  32799110 AGTTTCA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34501486 7 +  48394510 AGTTTCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20024816 7 +  32716333 AGTTTCA
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37495697 7 +  50472720 AGTTTTA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e canFam3.chr31              28114808 0 +  39895921 C
e rheMac3.chr3              185181926 3 - 198365852 I
e chlSab2.chr2               31678254 3 -  90373283 I
e papAnu2.chr3              167405347 0 - 180432695 C
e macFas5.chr3              179024970 0 - 192294377 C

a score=16540.000000
s hg38.chr21_GL383581v2_alt     92167 6 +    116689 GTTATT
s panTro4.chr21              19596307 6 +  32799110 GTTATT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34501493 6 +  48394510 GTTATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20024823 6 +  32716333 GTTATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185181929 6 - 198365852 GTTATT
i rheMac3.chr3              I 3 C 0
s macFas5.chr3              179024970 6 - 192294377 GTTATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167405347 6 - 180432695 gttatt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31678257 6 -  90373283 GTTATT
i chlSab2.chr2              I 3 C 0
s calJac3.chr21              37495704 6 +  50472720 CTTCTT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I
e canFam3.chr31              28114808 0 +  39895921 C

a score=17940.000000
s hg38.chr21_GL383581v2_alt     92173 6 +    116689 TTCTTT
s panTro4.chr21              19596313 6 +  32799110 TTCTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34501499 6 +  48394510 TTCTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20024829 6 +  32716333 TTCTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185181935 6 - 198365852 TTATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179024976 6 - 192294377 TTATTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167405353 6 - 180432695 ttattt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31678263 6 -  90373283 TTATTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37495710 6 +  50472720 TTCTTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28114808 6 +  39895921 TTCTGT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91615523 479 +  98207768 I

a score=6065190.000000
s hg38.chr21_GL383581v2_alt     92179 1401 +    116689  
s panTro4.chr21              19596319 1401 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34501505 1394 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20024835 1401 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185181941 1391 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179024982 1391 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167405359 1397 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31678269 1394 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37495716 1392 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91616002 1401 +  98207768  
i mm10.chr16                I 479 C 0
s canFam3.chr31              28114814 1431 +  39895921  
i canFam3.chr31             C 0 I 170

a score=190349.000000
s hg38.chr21_GL383581v2_alt     93580 51 +    116689 AACAAAGTTGTATTATCAGTTAATTTCTTATTTTCAG----CAATAAGGTAAAAG
s panTro4.chr21              19597720 51 +  32799110 AACAAAGTTGTATTATCAGTTAATTTCTTATTTTCAG----CAATAAGGTAAAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34502899 51 +  48394510 AACAAAGTTGTATTATCCGTTAATTTCTTATTTTCAG----CAATAAGGTAAAAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20026236 55 +  32716333 AACAAAGTTGTATTATCAGTTAATTTCTTATTTTAGGTAATTAATAAGGTAAAAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185183332 51 - 198365852 AACAAAGTTGTATTATCAGTTAATTTCTTATTTTCAA----CAATAAGGTATAAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179026373 51 - 192294377 AACAAAGTTGTATTATCAGTTAATTTCTTATTTTCAA----CAATAAGGTATAAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167406756 51 - 180432695 AACAAAGTTGTATTATcagttaatttcttattttcaa----caATAAGGTATAAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31679663 51 -  90373283 AACAAAGTTGTATTATCAGTTAATTTCTTATTTTCAG----CAATAAGGTGTAAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497108 55 +  50472720 AACAAAGTTGTGTTATCAGTTAATTTCTTATTTTCAATAAGCAATAAGGTATAAG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91617403 51 +  98207768 GATACACTTGTACTATCAGTCATTTTCTTTTCATCAA----TAACCAGGTAAGGG
i mm10.chr16                C 0 I 942
s canFam3.chr31              28116415 51 +  39895921 aaaaAAGTTGTATTATCAGCAAATCTCATCTTTTCAG----CCACCAGGGAAAAA
i canFam3.chr31             I 170 C 0

a score=164464.000000
s hg38.chr21_GL383581v2_alt     93631 47 +    116689 ATACAGCATGAATTTATAAGTACAACAAGGGGCAGTTCTTTTGAATG
s panTro4.chr21              19597771 47 +  32799110 ATACAGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTTGAATG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34502950 47 +  48394510 ATACAGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTTGAATG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20026291 47 +  32716333 ATACAGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTTGAATG
i nomLeu3.chr25             C 0 M 2124
s rheMac3.chr3              185183383 47 - 198365852 ATACGGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTAGAATG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179026424 47 - 192294377 ATACGGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTTGAATG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167406807 47 - 180432695 ATACGGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTTGAATG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31679714 47 -  90373283 ATATGGCATGAATTTACAAGTACAACAAGGGGCAGTTCTTTTGAATG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497163 47 +  50472720 TTAGAGCATGAATTTACAAGTACAACAATAGGCAGTTCTTTCTAATG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28116466 34 +  39895921 -------------TTACAGGTACAATAAGGGGCAGTTCTTTCTAATG
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I

a score=33404.000000
s hg38.chr21_GL383581v2_alt     93678 10 +    116689 CTGCTGTCAA
s panTro4.chr21              19597818 10 +  32799110 CTGCTGTCAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34502997 10 +  48394510 CTGCTGTCAA
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185183430 10 - 198365852 CTGCTGTCAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179026471 10 - 192294377 CTGCTGTCAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167406854 10 - 180432695 CTGCTgtcaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31679761 10 -  90373283 CTGCTGTCAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497210 10 +  50472720 CTGCTGTCAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28116500 10 +  39895921 CTGCTGCCAA
i canFam3.chr31             C 0 I 3
e mm10.chr16                 91617454 942 +  98207768 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=7754.000000
s hg38.chr21_GL383581v2_alt     93688 14 +    116689 C----------TTTttcc-t-ttttt
s panTro4.chr21              19597828 13 +  32799110 C----------TTtttcc---ttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34503007 19 +  48394510 C------Attttttttcctt-ttttt
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185183440 24 - 198365852 C-TTTTCCTTTTTTCCCCCC-Ctttt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179026481 24 - 192294377 C-TTTTCCTTTTTTCCCCCC-Ctttt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167406864 25 - 180432695 cattttcctttctttccccc-ttttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31679771 26 -  90373283 CATTTTCCTTTTTTTCCCCCGCtttt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497220 19 +  50472720 C-----AATTCTTTTTCCAT-TTtt-
i calJac3.chr21             C 0 I 2
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510  3 +  39895921 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=67160.000000
s hg38.chr21_GL383581v2_alt     93702 43 +    116689 ttttttttttgagacagagtctcgctctgtcacccaggctgga
s panTro4.chr21              19597841 43 +  32799110 ttttttttttgagacagagtctcgctctgtcacccaggctgga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34503026 43 +  48394510 ttttttttttgagacagagtctagctctgtggcccaggctgga
i ponAbe2.chr21             C 0 I 1812
s rheMac3.chr3              185183464 41 - 198365852 ttttccttttgagacagagtct--ctctgtctcccaggctgga
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179026505 41 - 192294377 ttttccttttgagacagagtct--ctctgtctcccaggctgga
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167406889 41 - 180432695 ctttccttttgagacagagtct--ctctgtctgccaggctgga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31679797 41 -  90373283 ttttccttttgagacagagtct--ctctgtcgcccaggctgga
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510  3 +  39895921 I
e calJac3.chr21              37497239  2 +  50472720 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=206065.000000
s hg38.chr21_GL383581v2_alt     93745 170 +    116689 gtgcagtggtgc--------------------------ctccacctccagagccacgcctagctaatttttttgtatttttagtagagaaggggtttcaccatatcgcccaggctggtctggatatcctgacatggttatctgcccgcctcggcctcccaaagtgctgggattacaggtatgagccact----gcgctca
s panTro4.chr21              19597884 174 +  32799110 gtgcagtggtgc--------------------------ctccacctccagagccacgcctagctaatttttttgtatttttagtagagaaggggtttcaccatattggccaggctggtctggatatcctgacatggttatctacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgggggcgctca
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185183505 188 - 198365852 gtgcagtggtgcctccgcctccagggttcaagcgcaatctccacctccagagccacgcccagctaatttttttgtatttttagtagagaagggttttcaccatgttggccaggctgctctggatatcctgacatggtgatccacccg-cttggcctccca-------gagattaccggcatgagccatc----gcgccTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179026546 188 - 192294377 gtgcagtggtgcctccgcctccagggttcaagcgcaatctccacctccagagccacgcccagctaatttttttgtatttttagtagagaagggttttcaccatgttggccaggctgctctggatatcctgacatggtgatccacccg-cttggcctccca-------gagattaccggcacgagccatc----gcgccTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167406930 188 - 180432695 gtgcagtggtgcctccgcctccagggttcaagcgcaacctccacctccagagccacgcccagctaatttttttgtatttttagtagagaagggttttcaccatgttggccaggctgctctggataTCCTGAcatggtgatccacccg-cttggcctccca-------gagattaccggcatgagccatc----gcgccta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31679838 189 -  90373283 gtgcagtggtgcctccgcctccagggttcaagcgcaacctccacctccagagccatgcccagctaatttttttgtatttttagtagagaagggttttcaccatgttggctaggctgctctggatatcctgacatggtgatccacccgccttggcctccca-------gggattactggcatgagccact----gcgccTA
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510   3 +  39895921 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e calJac3.chr21              37497239   2 +  50472720 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=519735.000000
s hg38.chr21_GL383581v2_alt     93915 319 +    116689 gcctttttttttttttttttttgtctgagacagggtcttgctctgttg-----------------cccatgctggagtgcagtggcacaatcgtggctcactgcagcatcaacctcctgggctgaagtgatcctcccacctctgcctctcatgttgctaggactacaggcgtgcaccaccacacctggctaatttctgtatttttgtagggatggggtttcgtcatgttgcccaccctggtctccaactcctgagctcaaacgatctgccagtttctgcctcccaaagtgctgggattataggggtgagccactgtgcccagccACATTCTT----tttt
s panTro4.chr21              19598058 319 +  32799110 gcctttttttttttttttttttttctgagagagggtcttgctctgttg-----------------cccatgctggagtgcagtggcacaatcgtggctcactgcagcatcaacctcctgggctgaagtgatcctcccacctctgcctctcatgttgctaggactacaggcgtgcaccaccacacctggctaatttctgtatttttgtagggatggggtttcgtcatgttgcccaccctggtctccaactcctgagctcaaacgatctgccagtttctgcctcccaaagtgctgggattataggggtgagccactgtgcccagccACATTCTT----tttt
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185183693 317 - 198365852 Gttttttttttttttttttttttttt-------------------ttannnnnnnnnnnnnnnnnnncgtgctggagtgcagtggcacaatcatggctcactgcagcatcaacctcctgggctgaagcgatcctcccacctctacctctcatgttgctgggactacaggcgtgcaccaccacacctggctaaattctgtatttttgtagggatggggtttcgtcatgttgcccatcctggtttccaactcctgagctcaaacaatctgccagcctctgcctaccaaagtgctgggattatggaggtgagccactgtgcccggccACAttctttttt----
i rheMac3.chr3              C 0 I 550
s macFas5.chr3              179026734 315 - 192294377 Gtttttttttttttttttttttttttgagacagggtcttgctctgttg-----------------cccgtgctggagtgcagtggcacaatcatggctcactgcagcatcaacctcctgggctgaagcgatcctcccacctctacctctcatgttgctgggactacaggcgtgcaacaccacacctggctaaattctgtatttttgtagggatggggtttcgtcatgttgcccatcctggtttccaactcctgagctcaaacaatctgccagcctctgcctaccaaagtgctgggattatggaggtgagccactgtgcccggccACAttctt--------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167407118 304 - 180432695 g-----------ttttttttttttttgagacagggtcttgctctgttg-----------------cccgtgctggagtgcagtggcacaatcatggctcactgcagcatcaacctcctgggctgaagcgatcctcccacctctacctctcatgttgctgggactacaggcgtgcaccaccacacctggctaatttctgtatttttgtagggatggggtttcgtcatgttgcccatcctggtttccaactcctgagctcaaacgatctgctagcctctgcctaccaaagtgctgggattatggaggtgagccactgtgcccggccacattctt--------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31680027 307 -  90373283 G--------ttttttttttttttttttagacagggtcttgctctgttg-----------------cccatgctgcagtgcagtggcacaatcatggctcactgcagcatcaacctcctgggctgaagcgatcctcccacctctacctctcatgttgctgggactacaggtgtgcaccaccacacctggctaatttctgtatttttgtagggatggggtttcgtcatgttgcccatcctggtttccaactcctgagctcaaacgatctgccagcctctgccttccaaagtgctgggattatggaggtgagccactgtgcccggccACAttctt--------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497241 319 +  50472720 gttttgttttgttttgtttttttttaaagacagcgtcttgctctgttg-----------------cccatgctggagtgcagtggcacaatcatgactcactgcagtctcgatctcctgggctcaagtgatcctcccacctctgcctcccctgtagctaggactacaggtgtgtatcaccacacctggctaatttttgtacttttgtagggatgggatttcatcatgctgtccacactggtctccaactcctgagctcaaatgatctgccagcctctgcctcccaaagtgctgggattataggggtgagcccctgtgcctggccGAAttctt----tctt
i calJac3.chr21             I 2 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510   3 +  39895921 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=83331.000000
s hg38.chr21_GL383581v2_alt     94234 86 +    116689 cttttcttttcttttc------ttttttttttttttgagacagagtctcac--------ccaggctggagtgcaatggcatgatctcggctcactgcaac
s panTro4.chr21              19598377 92 +  32799110 cttttcttttcttttcttttctttttttttttttttgagacagagtctcac--------ccaggctggagtgcaatggcatgatctcggctcactgcaac
i panTro4.chr21             C 0 C 0
s macFas5.chr3              179027049 78 - 192294377 ----------------------ttttttctttttttgagacggagtctcactctgttgcccaggctggagtgcaacggctcgatctcggctcactgcaac
i macFas5.chr3              C 0 I 311
s papAnu2.chr3              167407422 78 - 180432695 ----------------------ttttttctttttttgagacggagtctcactctgttgcccaggctggagtgcaatggcacgatctcggctcactgcaac
i papAnu2.chr3              C 0 I 306
s chlSab2.chr2               31680334 78 -  90373283 ----------------------ttttttctttttttgagatggagactcactctgttgtccaggctggagtgcaatggcacgatctcggctcactgcaac
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497560 77 +  50472720 -----------------------ttttttttttttttagatggagtctcactctgttgcccaggctggaatgcaatggcacaatctcagctcactgcaac
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510  3 +  39895921 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e rheMac3.chr3              185184010 550 - 198365852 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=27072.000000
s hg38.chr21_GL383581v2_alt     94320 21 +    116689 ctctgcctcccgggttcaagc
s panTro4.chr21              19598469 21 +  32799110 ctctgcctcccgggttcaagc
i panTro4.chr21             C 0 C 0
s macFas5.chr3              179027438 21 - 192294377 ctccgcctcccaggttcaagc
i macFas5.chr3              I 311 C 0
s papAnu2.chr3              167407806 21 - 180432695 ctccgcctcccaggttcaagc
i papAnu2.chr3              I 306 C 0
s chlSab2.chr2               31680412 21 -  90373283 ctctgcctcccaggttcaagc
i chlSab2.chr2              C 0 I 303
s calJac3.chr21              37497637 21 +  50472720 ctccacctcccaggttcaagt
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510  3 +  39895921 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e rheMac3.chr3              185184010 550 - 198365852 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=160327.000000
s hg38.chr21_GL383581v2_alt     94341 149 +    116689 gattctcctgcctcagcctc--------------ccaagtagctgggattacaggtgcacgacaccactcctggctaatttttgtatttttagtagagacggcgtttcaccgtgttagccaggatggtctcgatctcctgaccctgtgatctgcccgcctcga
s panTro4.chr21              19598490 149 +  32799110 gattctcctgcctcagcctc--------------ccaagtagctgggattacaggtgcacgacaccactccaggctaatttttgtatttttagtagagacggcgtttcaccgtgttagccaggatggtctcgatctcctgaccccgtgatctgcccgcctcga
i panTro4.chr21             C 0 C 0
s macFas5.chr3              179027459 149 - 192294377 gattctcctgcctcagcctc--------------ctgagtagctgggattacaggcgcccaccaccacgtccgtctaatttttgtatttttagtagagacggggtttcaccatgttggtcaagctggtctcgaactcccgaccttgtgatcctcccgcctcgg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167407827 149 - 180432695 gattctcctgcctcagcctc--------------ctgagtagctgggattacaggcgcatgccaccatgccaggctaatttttgtatttttagtagagacggggtttcaccatgttggtcaagctggtctcgaactcccgaccttgtgatcctcccgcctcgg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31680736 149 -  90373283 gattctcctgcctcagcctc--------------ctgagtagctggggttacaggcgcatgccaccatgcccggctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcccgaccgtgtgatcctcccccctcag
i chlSab2.chr2              I 303 C 0
s calJac3.chr21              37497658 160 +  50472720 gattctcctggctcagcctcccaagtaccaagtaccaagtacctgggattacaggtgtctgacaccaaccctagctaatttttgtatatttagtacagatggggtttcatcatgttggccaggctggtctcaaactcctaa---ggtgatccacccacctcag
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510   3 +  39895921 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e rheMac3.chr3              185184010 550 - 198365852 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=87502.000000
s hg38.chr21_GL383581v2_alt     94490 60 +    116689 cctcccaaagtgctgggattacaggcgtgagccaccgcacccagccCCACCAGCTGCATT
s panTro4.chr21              19598639 60 +  32799110 cctcccaaagtgctgggattccaggcgtgagccaccgcgcccagccCCACCAGCTGCATT
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185184560 57 - 198365852 cctcccaaagtgctgggtttacaggggtgagccaccgcgccagg---cACCAGCTGCATT
i rheMac3.chr3              I 550 C 0
s macFas5.chr3              179027608 57 - 192294377 ctgcccaaagtgctgggattacaggggtgagccaccgcgccagg---cACCAGCTGCATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167407976 57 - 180432695 ctgcccaaagtgctgggattacagggttgagccaccgcgccagg---cacCAGCTGCATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31680885 57 -  90373283 ctgcccaaagtgctgggattacaggggtgagccaccgcgccagg---cACCAGCTGCATT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497818 55 +  50472720 cctcccaaagtgctgggattacaggcctgagctaccacaccAGC-----CCAGGTGCATT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116510  3 +  39895921 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=148287.000000
s hg38.chr21_GL383581v2_alt     94550 69 +    116689 CTTATAGCTATATTTCACTGATGTGGGCAGAAAAGTGGAAGCTGATGAAGTTTAGTGTTAACATATTGT
s panTro4.chr21              19598699 69 +  32799110 CTTATAGCTATATTTCACTGATGTGGGCAGAAAAGTGGAAGCTGATGAAGTTTAGTGTTAACATATTTT
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185184617 69 - 198365852 GTTATAGCTATATTTCACTGATGTGGGCAGAAAAATGGAAGTTGATGAAGTTTAGTGTTAATATATTGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179027665 69 - 192294377 GTTATAGCTATATTTCACTGATGTGGGCAGAAAAATGGAAGTTGATGAAGTTTAGTGTTAATATATTGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408033 69 - 180432695 GTTATAGTTATGTTTCACTGATGTGGGCAGAAAAATGGAAGTTGATGAAGTTTAGTGTTAATATAttgt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31680942 69 -  90373283 GTTATAGCTATATTTCACTGATGTGGGCAGAAAAATGGAAGTTGATGAAGTTTAGCGTTAATATATTGT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497873 69 +  50472720 CTTATAGCTATATTTCACTGATGTTGAGGGAAAAATGGAAGCTGATGGAGTTTAGTGTTAACATATTGT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28116513 69 +  39895921 CTTACAGCCATATCTCACTCACGTTAGCTGACAAATGGAAGTTGATGATGTGTAGCATTAACATATTGT
i canFam3.chr31             I 3 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e ponAbe2.chr21              34503069 1812 +  48394510 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=442742.000000
s hg38.chr21_GL383581v2_alt     94619 251 +    116689 GGggccaggcacggtggcacacgcctgtaatcccagtactttaggaggccgaggtgggtggatcacctgaggtcaggagttcgagatcagcctggctaacatggcaaaaccctgtctctactaaaaatacaaaaattaactgga-ggttgcagtcccagctactcgggaggctgaggcaagagaatcgcttgaacccgggaggtggaggttgcagtgaaccgagatcgtgccactgcactccagcctgggca
s panTro4.chr21              19598768 252 +  32799110 GGggccaggcatggtggcacacgcctgtaatcccagtactttaggaggccgaggtgggtggatcacctgagattaggagttcgagatcagcctggctaacatggcaaaaccctgtctctactaaaaatacaaaaattaactgggcgcttgcagtcccagctactcgggaggctgaggcaagagaatcgcttgaacccgggaggtggaggttgcagtgaaccgagatcgtgccactgcacttcagcctgggca
i panTro4.chr21             C 0 C 0
s rheMac3.chr3              185184686 252 - 198365852 GGggccaggcacggtggcacatgccggtaatcccagtactttgggaggccgaggcgggccgatcacctgagatcaggagttcgaaatcagcctggtcaacatggcaaagccctgtttctactaaaaatacaaaaattaactgggcgcttgccgtcccaactactcgggcggctgaggcaagagaatcgcttgaacccgggaggtgaaggttgcagtgagccgagatcgtgccactacactccagcctgggca
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179027734 252 - 192294377 GGggccaggcacggtggcacatgccggtaatcccagtactttgggaggccgaggcgggccgatcacctgagatcaggagttcgaaatcagcctggtcaacatggcaaaaccctgtttctactaaaaatacaaaaattaactgggcgcttgcagtcccaactactcgggaggctgaggcaagagaatcgcttgaacccgggaggtgaaggttgcagtgagccgagatcgtgccactacactccagcctgggca
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408102 250 - 180432695 ggggccaggcacggtggcacatgccggtaatcccagtactttgggaggccgaggcgggtggatcacctgagatcaggagttagaaaTCAGgatggtcaacatggcaaaaccctgtttct-ctaaaaatac-aaaattaactgggcgcttgcagtcccaactactcgggaggctgaggcaagagaatcgcttgaacccgggaggtgaaggttgcagtgagccgagatcgtgccactacactccagcctgggca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681011 252 -  90373283 GGggccaggcacggtggcacatgcctgtaatctcagtactttgggaggccgaggcgggcggaccacctgagatcaggagttcgaaatcagcctggtcaacatggcaaaaccctgtttctactaaaaatacaaaaattaactgggcgcttgcagtcccagctactcgggaggctaaggcaagagaatcgcttgaaccggggaggtgaaggctgcagtgagccgagatcgcggcactacactccagcctgggca
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37497942 252 +  50472720 GGggccaggcacggtggcccacacctgtaatcccagcacttcaggaagccgaggcgggtggatcacctgaggtcaggagttcgacatcagcctggtaaacatggcgaaaccctgtctctactaaacatataaaaattaactgggtgcttgcagtcccagctactcaggaggctgaggcaagagaatcgcttgaacccgggagatggaggttgcagttagctgagatcacgccactacactccagcctgggcg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116582   0 +  39895921 C
e ponAbe2.chr21              34503069 1812 +  48394510 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=53811.000000
s hg38.chr21_GL383581v2_alt     94870 35 +    116689 acagagtgagactctgtctcaaaaaa--------------------------aT----------------------ATAGATA
s panTro4.chr21              19599020 35 +  32799110 acagagtgagactctgtctcaaaaaa--------------------------aT----------------------ATAGATA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34504881 39 +  48394510 ACAGAGCGAGACTCTGTCTCAAAAAA--------------------------AT------------------ATAGATAGATA
i ponAbe2.chr21             I 1812 C 0
s rheMac3.chr3              185184938 77 - 198365852 acagagcaagactctgtctcaaaaaaaaaaaaaaaaagaaaaaa------aTatatatagatagatagatagacagacagata
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179027986 83 - 192294377 acagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaagaaaaaaaaTATatagatagatagatagatagatagacagata
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408352 75 - 180432695 acagagcaagactctgtctcaaaaaaaaaaaaaaaaagaaaaaa--------atatatagatagatagatagacagacagata
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681263 75 -  90373283 acagagcaagactctgtctcaaaaaaaaaagaaTATATATatag--------atagatagatagatagacagacagacagata
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498194 49 +  50472720 acagagagagactgtgtctcaaaaca---agaacaacgacaaaa--------a-----------------------aCACTGT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e canFam3.chr31              28116582  0 +  39895921 C
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=82396.000000
s hg38.chr21_GL383581v2_alt     94905 35 +    116689 GATAGAATCTGGATTCTACCCCTCACTAACTAACC
s panTro4.chr21              19599055 35 +  32799110 GATAGAATCTGGATTCTACCCCTCACTAACTAACC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34504920 35 +  48394510 GATAGAATGTGGATTCTACCCCTCACTAACTaacc
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185185015 31 - 198365852 gataTAATCTGGATTCTACCCCTCACTAACC----
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028069 31 - 192294377 gataTAATCTGGATTCTACCCCTCACTAACC----
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408427 31 - 180432695 gatataaTCTGGATTCTACCCCTCACTAACC----
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681338 31 -  90373283 gataTAATCTGGATTCTACCCCTCACTAACC----
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498243 32 +  50472720 GATATAATCTGGATTCTACTCCTCACTAATCA---
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28116582 35 +  39895921 GATGTAATCTGGATTCTACTCCTCATTGACTAACC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e nomLeu3.chr25              20026338 2124 +  32716333 M

a score=625164.000000
s hg38.chr21_GL383581v2_alt     94940 200 +    116689 -GTATATTTTACAAGtggaaagttcttagagatcatcta--atccaatcttctcatttaatgagaaaacgtaggtccggaaggttaagcaatttaaccaagtcccataacaagGTGTAAGCAAAAT----GGTTAGGGGT-GGGCACAGTAAAAAAGGAGGCTTGC-TTAACTGTCTATACCTCCAGCCGATTATAAACTGCA----------------CGAGAG-------
s panTro4.chr21              19599090 201 +  32799110 -GTATATTTTACAAGtggaaagttcttagagatcatcta--atccaatcttctcatttaatgagaaaacgtaggtccggaaggttaagcaatttaaccaagtcccataacaagGTGTAAGCAAAAT----GGTTAGGGGT-GGGCACAGTAAAAAAGGAGGCTTGCTTTAACTGTCTATACCTCCAGCCGATTATAAACTGCA----------------CGAGAG-------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34504955 200 +  48394510 -gtatattttacaagtggaaagttcttagagatcatcta--atccaatcttctcatttcatgagaaaacgtaggtccggaaggttaagcaatttaaccaagtcccataacaagGTGTAAGCAAAAC----GGTTAGGGGT-GAGCACAGTAAAAAAGGAGGCTCGC-TTAACTGTCTATACCTCCAGCCGATTATAAACTGCA----------------CGAGAG-------
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20028462 199 +  32716333 -GTATATTTTACAAGtggaaagttcttagagattatcta--atccaatcttctcaattaatgagaaaacgtaggtccggaaggttaagcaatttaaccaagtcccataacaagGTGTAAGCAAAAT----GGTT-GGGGT-GGGCACAGTAAAAAAGGAGGCTTGC-TTAACTGTCTATACCTCTGGCCAATTATAAACTGCA----------------CGAGAg-------
i nomLeu3.chr25             M 2124 I 305
s rheMac3.chr3              185185046 201 - 198365852 -ATATATTTTACTAGCGGAAAATTcttagagatcatcta--atccaatcttttcgtttaatgacaaaacataggtccggaaggttaagcaatttaaccaagtcccataacaagGTGTAAGCAAAAT----GGTTAGGGGT-GGGCACTGTAAAAAAGGAGGCTTGC-TTAACTGTCTATACCTCCAGCCGATTATAAACTGCA---------------CCGAGAG-------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028100 201 - 192294377 -ATATATTTTACTAGCGGAAAATTcttagagatcatcta--atccaatcttttcgtttaatgacaaaacataggtccggaaggttaagcaatttaaccaagtcccataacaagGTGTAAGCAAAAT----GGTTAGGGGT-GGGCACTGTAAAAAAGGAGGCTTGC-TTAACTGTCTATACCTCCAGCCGATTATAAACTGCA---------------CCGAGAG-------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408458 201 - 180432695 -ATATATTTTACTAGCGGAAAATTCTTAGAGATCATCTA--ATCCAATCTTTTCGTTTAATGACAAAACATAGGTCCGGAAGGTTAAGCAATTTAACCAAGTCCAATAACAAGGTGTAAGCAAAAT----GGTTAGCGCT-GGGCACTGTAAAAAAGGAGGCTTGC-TTAACTGTCTATACCTCCAGCCGATTATAAACTGTA---------------CCGAGAG-------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681369 201 -  90373283 -ATGTATTTTACAAGCGGAAAATTcttagagatcatcta--atccaatcttttcatttaatgacaaaacgtaggtccggaaggttaagcaatttaaccaagTCCCTTAACAAGGTGTAAGCAAAAT----GGTTAGGGGT-GGGCACTGTAAAAAAGGAGGCTTGC-TTAACTGTCTATACCTCCAGCCGATTATAAACTGCA---------------CCGAGAG-------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498275 187 +  50472720 --CATATTTTACAAGtggaaagttcttagaggtcacctaatatccaatcttctcatttaatgagaaaacgtagctcctgaaggttaagcgatttagccaagtcccataacaagGTGTAAGCA---------GGTAGGGGT-GGGCACAG--AAAAAGGAGGCTTGC-TTA------TATACCTCCAGTCGGTTATAAACTGCA----------------CGGCG--------
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28116617 220 +  39895921 TCagaatttcagagctggcaagttcttggag---atcta--atctaatcttctcattttataagaaaacgtcggcccagaaggttaagcaacataacccagtcatacagcAGGGTGTAAGGAAAATTAGGGGTTAGGGGTAGGGCACAATAAATAA------TTGC-TTAATTCTCTGTGTCCCTGGCAGATTATAAACCTCAACACCTCCACTGTCTTTGATGGAATACCG
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I

a score=141435.000000
s hg38.chr21_GL383581v2_alt     95140 51 +    116689 TCTGCATCATCTCAAGAAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAC
s panTro4.chr21              19599291 51 +  32799110 TCTGCATCATCTCAAGGAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505155 51 +  48394510 TCTGCATCATCTCAAGGAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAC
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185185247 51 - 198365852 TCTGCATCATCTCAAGGAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028301 51 - 192294377 TCTGCATCATCTCAAGGAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408659 51 - 180432695 TCTGCATCATCTCAAGGAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681570 51 -  90373283 TCTGCATCATCTCAAGGAGTCTTCTCATAAGACGACTTATG-----------------GACAAGGTAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498462 51 +  50472720 TCTGCACCCTCTCAAAGAGTCTTCTCATAAGAAGACTTATG-----------------GACAAGGTAC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28116837 68 +  39895921 TCTTCATCATCTCCAGGAGTCTTCTCATGGGAAGACTCACACATGAAACCGAGAACCCGAGCAAGTAT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91617454 942 +  98207768 I
e nomLeu3.chr25              20028661 305 +  32716333 I

a score=275143.000000
s hg38.chr21_GL383581v2_alt     95191 92 +    116689 GTACCTGGTCTGATACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAGCTCGCTAGGAAGGAG----CTATCTGCCAGAGGCC
s panTro4.chr21              19599342 92 +  32799110 ATACCTGGTCTGATACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAGCTCGCTAGGAAGGAG----CTATCTGCCAGAGGCC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505206 92 +  48394510 GTACCTGGTCTGATACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAGCTCGCTAGGGAGGAG----CTATCTGCCAGAGGCC
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185185298 92 - 198365852 GTACCTGGTCTGACACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAGCTCGCTAGGAAGGAG----CCATCTGCCAGAGGCC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028352 92 - 192294377 GTACCTGGTCTGACACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAGCTCGCTAGGAAGGAG----CCATCTGCCAGAGGCC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408710 92 - 180432695 GTACCTGGTCTGACACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAACTCGCTAGGAAGGAG----CCATCTGCCAGAGGCC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681621 92 -  90373283 GTACCTGGTCTGACACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCACAGCTCGCTAGGAAGGAG----CCATCTGCCACAGGCC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498513 88 +  50472720 AAACCTGGTCTGATACTGGATTGAAT--AGAATCAAGTGTCCAAAAGACT----TTAAGCTCCATAGCTCGCTAGGAAGGAG--------CTGCCAGAGGCC
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91618396 83 +  98207768 GTACTCAGTGGGACACCAGATGGGACTGAGAATCAAGAATGCAAGCGACT----TTAAGGTCTGCACCTCGCTA---------------TTTGCTAGGTGCC
i mm10.chr16                I 942 I 4
s canFam3.chr31              28116905 99 +  39895921 GTAGCTCGTCTGACTCGAAACGGAAT--GGAATCAAGTGTCCGAAAGACTTTAATTAAGCTCTGCACCTTATCAAGAAGGAGCTGTCTGTCTGCTACATGC-
i canFam3.chr31             C 0 C 0
e nomLeu3.chr25              20028661 305 +  32716333 I

a score=381844.000000
s hg38.chr21_GL383581v2_alt     95283 112 +    116689 AGAAAAACCATGATGAATTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----TACTGGA
s panTro4.chr21              19599434 112 +  32799110 AGAAAAACCACGATGAATTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----TACTGGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505298 112 +  48394510 AGAAAAACCACGATGAACTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----TAATGGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20028966 112 +  32716333 agaaaAACCACGATGAACTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AGTAA-------------------------------------CACGGTCTCGAAGAGGAGGAAGACTTGCACACTGACAATGGACAAAAAA-----TACGGGA
i nomLeu3.chr25             I 305 C 0
s rheMac3.chr3              185185390 112 - 198365852 AGAAAAACCACGATGAACTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----CACTGGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028444 112 - 192294377 AGAAAAACCACGATGAACTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----CACTGGA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408802 112 - 180432695 AGAAAAACCACGATGAACTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----CACTGGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681713 112 -  90373283 AGAAAAACCACGATGAACTGTGAGGCCTCCCAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTGTACACTGACAATGGCCAAAAAA-----CACTGGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498601 112 +  50472720 AGGAAAACCACGATGAACGGTGAGGCCTCCTAACACGTTTGCT--------------------------GCTATTGC----------------------AATAA-------------------------------------CATGGTCTCGAAGAGGAGGAAGACTTCTGCACTGACAACGGCCAAAAAA-----TATTGGA
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91618483 108 +  98207768 CAAGGAAGGGCGATAAAGGGTGAG-------AGAGCTTTTGCT--------------------------GTATTTAA----------------------AAACG-------------------------------------CATGGTCCTGTGGAAAAAGATA--CTGAACACTGACGAAAGGCAACGGAGTACTTACTGGA
i mm10.chr16                I 4 I 62
s canFam3.chr31              28117004 197 +  39895921 TGGGACACCGGGACGAAGGGCGGGCCCTCCCGACACGTTAGCTGTTTGGTTTTCTTGTTGTTGTTGTTAGCTGTTGTTTTTAAAACGCATGGTCTAATAAATAAAAATCTTAAAAAAGAAAAGAAAAAAAGAAACAGAACGCATGGTCTAGCAGAAGAGCACGACTTATACCCAGATAACGGCAATGAAA-----CGCCAGA
i canFam3.chr31             C 0 C 0

a score=249309.000000
s hg38.chr21_GL383581v2_alt     95395 70 +    116689 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTGAGACCCCCTATTTTCTAGGCA
s panTro4.chr21              19599546 70 +  32799110 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTGAGACCCCCTATTTTCTAGGCA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505410 70 +  48394510 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTGAGACCCCCTATTTTCTAGGCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20029078 70 +  32716333 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTGAGACCCCCTATTTTCTACGCA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185185502 70 - 198365852 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTAAGACCCCCTATTTTCTAGACA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028556 70 - 192294377 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTAAGACCCCCTATTTTCTAGACA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408914 70 - 180432695 AGTGGCTTAATTGGAATTGGGATAT-------ATAAACGCTAAAACGGAGCTCCTGAGACCCCCTATTTTCTAGACA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681825 70 -  90373283 AGTGGCTTAATTGGAATTGGAATAT-------ATAAACGCTAAAACGGAGCTCCTGAGACCCCCTATTTTCTATACA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498713 70 +  50472720 AGTGGCTTAATTGGAAGTGGGATAT-------ATAAACACTAAAACGGGAATCCTGAGACCCCCTATTTTCTGGACA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28117201 77 +  39895921 AGTGGTTTAATGGGAAGTGCGATTTTTGATGCACGAACGCTAAGGCTGAGCTCCTGGGGACCCCAGTTTGCTGAACA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91618591 62 +  98207768 I

a score=1553551.000000
s hg38.chr21_GL383581v2_alt     95465 466 +    116689  
s panTro4.chr21              19599616 466 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505480 467 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20029148 467 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185185572 470 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179028626 470 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167408984 469 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31681895 469 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37498783 485 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91618653 436 +  98207768  
i mm10.chr16                I 62 I 2276
s canFam3.chr31              28117278 513 +  39895921  
i canFam3.chr31             C 0 C 0

a score=138187.000000
s hg38.chr21_GL383581v2_alt     95931 39 +    116689 GCGCCTGCGCCTCTCGGGAGGGACTTAGGGGGCGTCGAA
s panTro4.chr21              19600082 39 +  32799110 GCGCCTGCGCCTCTCGGGAGGGACTTAGGGGGCGTCGAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505947 38 +  48394510 GCGCCTGCGCCTCTCGGGAGGGACTTA-GGTGCGTTGAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20029615 39 +  32716333 GCGCCTGCGCCTCTCGGGAGGGACTTAGCGGGCGTCGAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186042 39 - 198365852 GCGCCTGCGCCTCTCGGGAGGGACTTAGGGAGCGTCGAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179029096 39 - 192294377 GCGCCTGCGCCTCTCGGGAGGGACTTAGGGAGCGTCGAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167409453 39 - 180432695 GCGCCTACGCCTCTCGGGAGGGACTTAGGGAGCGTCGAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31682364 39 -  90373283 GCGCCTGCGCCTCTCGGGAGGGACTTAGGGAGCGTCGAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37499268 39 +  50472720 GCGCCTGCGCCTCTCGGGAGGGACTTACGGGGCGTCGAA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28117791 37 +  39895921 GCGCCTGCGCCTTCCTGGAGGGAGGC--GGGGCGACGGA
i canFam3.chr31             C 0 I 312
e mm10.chr16                 91619089 2276 +  98207768 I

a score=150487.000000
s hg38.chr21_GL383581v2_alt     95970 54 +    116689 AATGATGTAAAGACCGAGTTGGCGGCGT-GGGGAGTTGTGGCTCGGAGGGCGAGG
s panTro4.chr21              19600121 54 +  32799110 AATGATGTAAAGACCGAGTTGGCGGCGT-GGGGAGTTGTGGCTCGGAGGGCGAGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34505985 52 +  48394510 AATGATGCAAAGAC--AGTTGGCGGCGT-GGGGAGTTGTGGCTCGGAGGGCGAGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20029654 54 +  32716333 AATGATGCAAAGACCGAGTTGGCGGCGT-GGGGAGCTGTGGCTCGGCGGGCAGGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186081 54 - 198365852 AATGATGCAAAGACCGAGTTGGCGGCGT-GGGGAGCTGTGGCTCAGAGGGCGAAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179029135 54 - 192294377 AATGATGCAAAGACCGAGTTGGCGGCGT-GGGGAGCTGTGGCTCAGAGGGCGAAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167409492 55 - 180432695 AATGATGCAAAGACCGAGTTGGCGGCGTGGGGGAGCTGTGGCTCAGAGGGCGAAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31682403 54 -  90373283 AATGATGCAAAGACCGAGTTGGCAGCGT-GGGGAGCTGTGGCTCAGAGGGCGAAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37499307 52 +  50472720 AATGAGGC--AGACTGAATTGGTGGCGT-GTGGAGCTGCGGCTCGGAAGGCGATG
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28117828 312 +  39895921 I

a score=783391.000000
s hg38.chr21_GL383581v2_alt     96024 255 +    116689 GTAACTTTCTGGGGGCAGGGGAAGGCAAGGCTGTTTCCCCGGAACGGGACCGGAACAGGTTTATTCGGGGTCACAGAAGGAGTCACCTGCGCAGATACAT----------GAGGCTTA-AAACCTGCCCTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTGGAG--TTCAACCACTGACGTGGGGACTGAGCATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
s panTro4.chr21              19600175 255 +  32799110 GTAACTTTCTGGGGGCAGGGGAAGGCAAGGCTGTTTCCCCGGAACGGGACCTGAACAGGTTTATTCGGGGTCACAGAAGGAGCCATCTGCGCAGATACAT----------GAGGCTTA-AAACCTGCCGTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTGGAG--TTCAACCACTGACGTGGGGACTGAGCATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506037 255 +  48394510 GTAACTTTTTGGGGGCAGGGGAAGGTAAGGCTGTTTCCCCGGAACGGGACCTGAACAGGTTTCTTCGGGGTCACAGAAGGAGCCACCTGCGCAGATACAT----------GAGGCTTA-AAACCTACCCTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTGGAG--TTCAACCACTGACGTGGGGACTGAGCATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20029708 255 +  32716333 GTAACTTTTTGGGGGCGAGGGAAGGCAAGGCTGTTTCCCTGGAACGGGACCTGAACAGTTTTCTTCGGGGTCACAGAAGGAGCCACTTGCGCAGATACAT----------GAGGCGTA-AAACCTGCCCTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTCGAG--TTCAACCACTGACGTGGAGACTGAGCATTTTCCCTCTCTGTACAGGAAGCAAGTTTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186135 250 - 198365852 GTAACTTTTTGGGGGCTGGGGAAGGCAAGACTGTTTCCCCGGAACGGGACCTGAACAGGTTTCTTCGGAGTCACAGAAGGAGCCAT-------GATATAT----------GAGGCTTA-AAACCTGCCCTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTCGAGTTTTCAACCACTGAGGTGGGGACTGAACATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179029189 250 - 192294377 GTAACTTTTTGGGGGCTGGGGAAGGCAAGACTGTTTCCCCGGAACGGGACCTGAACAGGTTTCTTCGGAGTCACAGAAGGAGCCAT-------GATATAT----------GAGGCTTA-AAACCTGCCCTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTCGAGTTTTCAACCACTGAGGTGGGGACTGAACATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167409547 250 - 180432695 GTAACTTtttgggggctggggaaggcaagACTGTTTCCCCGGAACGGGACCTGAACAGGTTTCTTCGGAGTCACAGAAGGAGCCAT-------GATATAT----------GAGGCTTA-AAACCTGCCCCT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACAGGCCAGAGGACAAAATCAAAATAAGGATCTTCTGGC-TTCGAGTTTTCAACCACTGAGGTGGGGACTGAACATTTCCCCTCTCTGTACAGgaagcaagttttt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31682457 246 -  90373283 GTAACTTTTTGGGGGCTGGGGAAGGCAAGAC--TTTCCCCGGAACGGCACCTGAACAGGATTCTTCGGAGTCACAGAAGGAGCCAT-------GATATAT----------GAAGCTTA-AAACCTGCCCTT-----TTATTAATT---CAAGTAC-TGTTGAGGGGCTGGC---GACACGCCAGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTCGAG--TTCAACCACTGAGGTGGGGACTGAACATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37499359 259 +  50472720 GTAACTTTTTTGGGGCAGGAGAAGGCAAGGCTGTTTCCCCGGAACGGGACCTGAGCAGGCTTCTTCGGGGTCACAGAAGGGGCCACCTGCGCAGATACGT----------GAGGATTACAAACCTGCCCTT-----TTATTAATTCACCAAGTAC-TGCTGAGGGGCTGCC---GACAGGACCGAGGACAAAATCAAAATAGGGATCTTCTGGC-TTCAAA--TTCAACCACTGACTTGGGGACTGAGCATTTCCCCTCTCTGTACAGGAAGCAAGTTTTT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28118140 266 +  39895921 GTAATTTGCTTTTGAGAAGGGACCGCGGAGTCGTTTCCTC-GATCAGGACCTGGACAGCCTTTTCCGAGTTTGCAGGTGGGG-CACCTGTGCAGAGGCCTCTAGCAAACCCAGGCTGG-AAACCTAGTCTTAGGTCTGGTTAATTTAGCAACTACTTACTGAGCAGCTGGCTTAGCCAGGCGCTGGT---------AGGTAGGG-TCTCCTCGCTTTTAAG--CTCAGCCACTGCCATCGGTATTTCTTGTTTCCCCCTCTTGGACGGGGAGATACTTTCt
i canFam3.chr31             I 312 I 363
e mm10.chr16                 91619089 2276 +  98207768 I

a score=99537.000000
s hg38.chr21_GL383581v2_alt     96279 38 +    116689 TAACAAGGAAAAA-GAAAAAGGATAAAAAgaaaa----aggca
s panTro4.chr21              19600430 34 +  32799110 TAACAAGGAAAAA-GAAAAAGGATAAAAAGAAAA--------A
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506292 38 +  48394510 TAAAAAGGAAAAA-GAAAAAGGATAAAAAgaaaa----aggca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20029963 43 +  32716333 TAAAAAGGAAAAAGGAAAAAGGATAAAAAGAAAgaaaaaggca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186385 42 - 198365852 TAAAAAGGACAAA-GAAAAAGGATAAAAAGAAAGGAAAAGGCA
i rheMac3.chr3              C 0 I 322
s macFas5.chr3              179029439 42 - 192294377 TAaaaaggacaaa-gaaaaaggataaaaagaaaggaaaaggca
i macFas5.chr3              C 0 I 321
s papAnu2.chr3              167409797 42 - 180432695 aaaaaaggacaaa-gaaaaaggataaaaagaaaggaaaaggca
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31682703 42 -  90373283 TAaaaaggacaaa-gaaaaaggataaaaagaaaggaaaaggca
i chlSab2.chr2              C 0 I 310
s calJac3.chr21              37499618 38 +  50472720 TAAAAAGGAAAAA-GAAAAGGGATAAAAAGAAAA----AGGCA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28118406 363 +  39895921 I

a score=46656.000000
s hg38.chr21_GL383581v2_alt     96317 14 +    116689 gaggcttgggagtt
s panTro4.chr21              19600464 14 +  32799110 GAGGCTTGGGAGTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506330 14 +  48394510 gaggcttgggagtt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20030006 14 +  32716333 gaggcttgggagtt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186749 14 - 198365852 GAGGCTTGGGAGTT
i rheMac3.chr3              I 322 C 0
s macFas5.chr3              179029802 14 - 192294377 GAGGCTTGGGAGTT
i macFas5.chr3              I 321 C 0
s papAnu2.chr3              167409839 14 - 180432695 gaggcttgggagtt
i papAnu2.chr3              C 0 I 322
s chlSab2.chr2               31683055 14 -  90373283 GAGGCTTGGGAGTT
i chlSab2.chr2              I 310 C 0
s calJac3.chr21              37499656 14 +  50472720 GAGGCTTGGCAGTT
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28118406 363 +  39895921 I

a score=441636.000000
s hg38.chr21_GL383581v2_alt     96331 157 +    116689 ttcagatctgggttgaaaatcc-----------------------------------------------------tgtttcttctgcttgcaccttaggcaagatacctGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATAGTATGCcattgtgctaagtgctttatgtatattctcatttac-----tttttttttttttttttt
s panTro4.chr21              19600478 162 +  32799110 TTCAGATCTGGGTTGAAAATCC-----------------------------------------------------TGTTTCTTCTGCTTGCACCTTAGGCAAGATACCTGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATAGTATGCcattgtactaagtgctttatgtatattctcatttacttttttttttttttttttttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506344 159 +  48394510 ttcagatctgggttgaaaatcc-----------------------------------------------------tgtttcttctgcttgcaccttaggcaagatacctGCAAAATGAGAGTTGCAATAAATAATAAACTATAGTAAATAGTATGCcattgtgctaagtgctttaggtatattctcatttgc---ttttttttttttttttttct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20030020 154 +  32716333 ttcagatctgggttgaaaatcc-----------------------------------------------------tgtttcttctgcttgcaccttaggcaagatacctGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATAGTATGCcattgtgctaagtgctttatgtat------atttac--ttttttttttttttttttttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186763 157 - 198365852 TTCAGATCTGGGTTGAAAATCT-----------------------------------------------------TGTTTCTTCTGCTTGCACCTTAGGCAAGATACCTGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATGGTATggcattgtgctaagtgctttatgtatattctcatttcg-----tttttttttttttttttt
i rheMac3.chr3              C 0 I 5
s macFas5.chr3              179029816 157 - 192294377 TTCAGATCTGGGTTGAAAATCT-----------------------------------------------------TGTTTCTTCTGCTTGCACCTTAGGCAAGATACCTGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATGGTATggcattgtgctaagtgctttatgtatattctcatttcg-----tttttttttttttttttt
i macFas5.chr3              C 0 I 5
s papAnu2.chr3              167410175 157 - 180432695 TTCAGATCTGGGTTGAAAATCT-----------------------------------------------------TGTTTCTTCTGCTTGCACCTTAGGCAAGATACCTGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATGGTatggcattgtgctaagtgctttatgtatattctcatttcc-----tttttttttttttttttt
i papAnu2.chr3              I 322 I 1950
s chlSab2.chr2               31683069 152 -  90373283 TTCAGATCTGGGTTGAAAATCT-----------------------------------------------------TGTTTCTTCTGCTTGCACCTTAGGCAAGATACCTGCAAAATGAGAGTTGCAATAAATAGTAAACTATAGTAAATAGTATggcattgtgctaagtgctttatgtatattctcatttcc-----ttttttttttttt-----
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37499670 202 +  50472720 TTCAGATCTGGATTGAAAATCCTGTTGCTAGTGGGGGAAGGAGAATAATTTTTAAAAAAAAGAAAAAGAAAATCTTGTTTCTTCTGCTTGCACCAAAGGCAAGATACCTGCAAAATGAGAGTTGCAGTACATAGTAAACTATAGGAAATGGTAGgacactgtgctaagtgctttatatatattctcattcaC-----tttttttttt--------
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28118406 363 +  39895921 I

a score=380112.000000
s hg38.chr21_GL383581v2_alt     96488 180 +    116689 gagacagagtctcgctctgtcgcccaggctggagtgtggtggcgcgatctcggctcgctgcaacctccacctcccgggtttaagct----attctcctgcctcagcctcccgagtagctggaattacaggcgcgcaccaccatgcccagctaa-tttttttgtatttttagtggagaccaggttt
s panTro4.chr21              19600640 180 +  32799110 gagacagagtctcgctctgtcgcccaggctggagtgtggtggcgcgatctcggctcgctgcgacctccacctcccgggtttaagcg----attctcctgcctcagcctcccgagtagctggaattacaggtgcgcaccaccatgcccagctaa-tttttttgtatttttagtggagaccaggttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506503 180 +  48394510 caggcagagtctcgctctgtcgcctaggctggagtgtggtggcgcgatctcggctcactgcgacctccacctcccgggtttaagcg----attctcctgcctcagcctcccgagtagctggaattccaggcgtgcaccaccatgtccggctaa-tttttttgtatttttagcggagaccaggttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20030174 180 +  32716333 gagacagagtctcgctctctcacccaggctggagtgtggtggcgcgatctctgctcactgcgacctccacctcccgggtttaagcg----attctcctgcctcagcctcccgagtagctggaattacaggcgtgcaccaccatgtctggctaa-tttttttgtatttttagcggagaccaggttt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185186925 178 - 198365852 --gagacagtcttgctctgtctcccaggctggactgtggtggcgcgatctcggctcactgcgacctgcacctcccgggtttaagcg----attttcctgcctcagcctcccaagtagctgggattacaggctttcacaaccatgcccggctaa-cttttttctatttttagcggagaccaggttt
i rheMac3.chr3              I 5 C 0
s macFas5.chr3              179029978 178 - 192294377 --gagacagtcttgctctgtctcccaggctggactgtggtggcgcgatctcggctcactgcgacctgcacctcccgggtttaagcg----attctcctgcctcagcctcccaagtagctgggattacaggctttcacaaccatgcccggctaa-cttttttctatttttagcggagaccaggttt
i macFas5.chr3              I 5 C 0
s chlSab2.chr2               31683221 177 -  90373283 ---ggacagtcttgctctgtctcccaggctggactgtgggggtgtgatctcggctcacttcgacctccacctcccgagtttaagcg----attctcctgcctcagcctcccaagtagctgggatcacaggcgttcacaaccatggccggctaa-tatttttgtatttttagcggagaccaggttt
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37499872 183 +  50472720 -ggacagagtcgtggtctgtcgcacaggctggagtgcggtgacgcgatctcggctcactgcaacctctgact-ctgggttcaagcgattcattctcctgcctcagcctcccaagtagctgggattacaggcgctcactactaagccgggctaattttttttgtattattagcggagaccgagttt
i calJac3.chr21             C 0 I 3369
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28118406 363 +  39895921 I
e papAnu2.chr3              167410332 1950 - 180432695 I

a score=228893.000000
s hg38.chr21_GL383581v2_alt     96668 126 +    116689 caccatgttggccaggctggtctcgaacccctgagctaaggtgatctgcctgcctcggcctttcaaagtgctgggattacaggcattcatttaatctttacaacagccctctgagataaatgctgt
s panTro4.chr21              19600820 126 +  32799110 caccatgttggccaggctggtctcgaactcctgagctaaggtgatctgcctgcctcggcctttcaaagtgctgggattacaggcattcatttaatctttacaacagccctctgagataaatgctgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506683 126 +  48394510 caccatgttggccaggctggtctcgaactcctgagctaaggtgatctgcctgcctcggcctttcaaagtgctgggattacaggcattcatttaatctttacaacagccctctgagataaatgctgt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20030354 124 +  32716333 ggccatgttggccaggctggtctcgaactc--gagctaaggtgatctgcctgccttggcctttcaaagtgctgggattacagtcattcatttaatcttcacaacagccctctgagataaatgctat
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185187103 125 - 198365852 caccat-ttggccaggctggtctcgaactcctgagctaaggttatccgcctgcctcggcctttcaaagtgctggaattacaggcattcatttaatctttacaacagccctctaagataaatgctgt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179030156 125 - 192294377 caccat-ttggccaggctggtctcgaactcctgagctaaggtgatccgcctgcctcggcctttcaaagtgctggaattacaggcattcatttaatctttacaacagccctctaagataaatgctgt
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31683398 125 -  90373283 caccat-ttggccaggctggtctcgaactcctgagctaaggtgatccgcctgcctcggcctttcaaagagctgggattacaggcattcatttaatctttacaacagccctctgagataaatgctgt
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28118406 363 +  39895921 I
e calJac3.chr21              37500055 3369 +  50472720 I
e papAnu2.chr3              167410332 1950 - 180432695 I

a score=625307.000000
s hg38.chr21_GL383581v2_alt     96794 298 +    116689 tattttccctattttacatataatgaaataataattgtatcaacttcattgactttttt------------agggg--------gag-aattacacaatgtatgtaaaccacttggcactgtgcctcgcacattaagcAATATTTTTTGTTATGACTGTGTCTCCTAAAAGGAGCCAGAAATAGGTATTAGCC-TCCTCAGCTTCTACA-TCATAAACATTAGAATCATTTATTGCCATCTATGTAGGAACACAGAAAAAGATACAGTATAAACTCTGATTCTGAGGGCTT---TAGTTATAAGCAAACAATCAACAAAATAAC
s panTro4.chr21              19600946 298 +  32799110 tgttttccctattttacatataatgaaataataattgtatcaacttcattgactttttt------------agggg--------gag-aattacataatgtatgtaaaccacttggcactgtgcctcgcacattaagcAATATTTTTTGTTATGACTGTGTCTCCTAAAAGGAGCCAGAAATAGGTATTAGCC-TCCTCAGCTTCTACA-TCATAAACATTAGAATCATTTATTGCCATCTATGTAGGAACACAGAAAAAGATACAGTATAAACTCTGATTCTGAGGGCTT---TAGTTATAAGCAAACAATCAACAAAATAAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34506809 297 +  48394510 t-ttttccctattttacatataatgaaataataattgtatcaagttcattgactttttt------------agggg--------gag-aattacacaatgtatgtaaaccacttggcactgtgcctcgcacattaagcAATATTTTTTGTTATGACTGTGTCTCTTAAAAGGAGCCAGAAATAGGTATTGGCC-TTCTCAGCTTCTACA-TCATAAACATTATAATCATTTATTGCCATCTATGTAGGAGCACAGAAAAAGATACAGTATAAACTCTGATTCCGAGGGATT---TAGTTATAAGCAAACAATCAACAAAATAAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20030478 298 +  32716333 tattttccctattttacatataatgaaaTAATAATTGTATCAAGTTCATTGACTTTTTT------------AGGGG--------GAG-aattacacaatgtatgtaaaccacttggcactatgcctcgcacattaagcAATATTTTTTGTTATGACTGTGTCTCCTAAAAGGAAACAGAAATAGGTATTAGCC-TTCTCAGCTTCAACA-TCATAAACATTATAATCATTTATTGCCATCTATGCAGGAGCACAGAAAAAGATACAGTATAAACTCTGATTCCGAGGGCTT---TAGTTATAAGCAAACAATCAACAAAATAAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185187228 299 - 198365852 tattttccctattttacatataatgaaataataattgtatcaagttcattgactttttt------------agggg--------gagaaattacacaatgtatgtaaaccacttggcactgtgcctcgcacattaagcAATATTTTTTGTTATGACTGTGTCTCCTAAAAGGAGCCAGGAATAGGTATTAGCC-TTCTCAGCTTCCGCA-TCATAAACATTATAATCATTTATTGCCATCTATGTAGGAGCACAGAAAAAGATACAGTATAAACTCTGATTCAGAGGGCTT---TAGTTATAAGAAAACAATCAACAAAATACC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179030281 299 - 192294377 tattttccctattttacatataatgaaataataattgtatcaagttcattgactttttt------------agggg--------gagaaattacacaatgtatgtaaaccacttggcactgtgcctcgcacattaagcAATATTTTTTGTTATGACTGTGTCTCCTAAAAGGAGCCAGGAATAGGTATTAGCC-TTCTCAGCTTCCGCA-TCATAAACATTATAATCATTTATTGCCATCTATGTAGGAGCACAGAAAAAGATACAGTATAAACTCTGATTCAGAGGGCTT---TAGTTATAAGAAAACAATCAACAAAATACC
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31683523 299 -  90373283 tattttccctattttacatataatgaaataataattgtatcaagttcattgactttttt------------agggg--------gagaaattacacaatgtatgtaaaccacttggcactgtgccttgcacattaagcAGTATTTTTTGTTATGACTGTGTCTCCTAAAAGGAGCCAGGAATACGTATTAGCC-TTCTCAGCTTCTGCA-TCATAAACATTATAATCATTTATTGCCATCTGTGTAGGAGCACAGAAAAAGATACAGTATCAATTCTGATTCAGAGGCCTT---TAGTTATAAGAAAACAATCAACAAAATACT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28118769 315 +  39895921 TACTTTC---ATTTTACACGTGATGAAATAATGATTGCATCAAACACACTCAATTTTTTTTTTTTAAACACAGTGAACTTttgtgag-aattgcacaaggtatgtaagccacctggcacagttcctggcgcattaagcaatgtatttgattatGACAGGGTCTCCTAAAAGGAGCCCAAAATAGGTACTAGCCTTTCTGAGCTTCTGAATTTACAGGCGGTATAGCAGTTTGCTGACTCCCATGTAGTTGCACAGAGAAAGA-----TTTAAATACTGAGGCAGAGGGATTGCCTTATAATAAGCAAACAATGAACAAGCTAGC
i canFam3.chr31             I 363 I 4951
e mm10.chr16                 91619089 2276 +  98207768 I
e calJac3.chr21              37500055 3369 +  50472720 I
e papAnu2.chr3              167410332 1950 - 180432695 I

a score=534397.000000
s hg38.chr21_GL383581v2_alt     97092 311 +    116689 TCATGTGAAAGAAAATAGGATTTCTggccgggcgcggt-gctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgtggtggcgggcgcctgtagtcccacctgctcgggagtctgaggcaggagaatggcgtgaacccgggaggcggagcttg---cagtgagcctagatcgtgccactgc-actccagcctgggcgacagagccagact-ccgtctaaaaaaa
s panTro4.chr21              19601244 312 +  32799110 TCATGTGAAAGAAAATAGGATTTCTggccgggcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaatttagccaggtgtggtggcgggcgcctgtagtcccacctgctcgtgaggctgaggcaggagaatggtgtgaacccgggaggcggagcttg---cagtgagcctagatcgtgccactgc-actccagcctgggcgacagagcaagact-ccgtctaaaaaaa
i panTro4.chr21             C 0 I 317
s ponAbe2.chr21              34507106 312 +  48394510 TCGTGTGAAAGAAAATAGGATTTCTggccgggcgcggtggctcacgccagtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaagtacaaaaaattagccgggtgtggtggcgggcgcctgtagtctcagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttg---cagtgagcgtagatcgcgccagtgc-actccagcctgggcgacagagcaagact-ccatatcaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20030776 311 +  32716333 TCATGTGAAAGAAAATAGGATTTCTGGATgggcaccgtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacac-gtgaaaccccatctctactaaaaatacaaaaaattagccaggcgtggtggcaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttg---cagtgagcctagatcgtgccactgc-actccagcctgggcgacagagcaagact-ctgtctcaaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185187527 314 - 198365852 TCATGTGAAAGAAAATAGGATTTCTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagaca-gcagatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctattaaaaatacaaaaaattagctgggcgtggtgccgagcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgnnnnnnnnnnncgagattgtgccactgc-actccagcctgggtgacaaagcaagact-ccgtcaaaaaaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179030580 311 - 192294377 TCATGTGAAAGAAAATAGGATTTCTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagaca-gcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctattaaaaatacaaaaaattagctgggcgtggtgccgagcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttg---cagtgagccgagattgtgccactgc-actccagcctgggtgacaaagcaagact-ccgtcaaaaaaaa
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31683822 313 -  90373283 TCACGTGAAAGAAAATAGGATTTCTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagacaggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctattaaaaatacaaaaaattagctgggcatggtgccaagcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttg---cagtgagctgagatctggccactgcaactccagcctgggcgac-gagcaagactcccatctaaaaaaa
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28119084 4951 +  39895921 I
e calJac3.chr21              37500055 3369 +  50472720 I
e papAnu2.chr3              167410332 1950 - 180432695 I

a score=2730.000000
s hg38.chr21_GL383581v2_alt     97403 2 +    116689 aa
s ponAbe2.chr21              34507418 2 +  48394510 aa
i ponAbe2.chr21             C 0 I 300
s nomLeu3.chr25              20031087 2 +  32716333 aa
i nomLeu3.chr25             C 0 I 12
s rheMac3.chr3              185187841 2 - 198365852 aa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179030891 2 - 192294377 aa
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31684135 2 -  90373283 aa
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28119084 4951 +  39895921 I
e calJac3.chr21              37500055 3369 +  50472720 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e panTro4.chr21              19601556 317 +  32799110 I

a score=3822.000000
s hg38.chr21_GL383581v2_alt     97405 2 +    116689 aa
s panTro4.chr21              19601873 2 +  32799110 aa
i panTro4.chr21             I 317 C 0
s ponAbe2.chr21              34507720 2 +  48394510 aa
i ponAbe2.chr21             I 300 C 0
s nomLeu3.chr25              20031101 2 +  32716333 aa
i nomLeu3.chr25             I 12 C 0
s rheMac3.chr3              185187843 2 - 198365852 aa
i rheMac3.chr3              C 0 I 1306
s macFas5.chr3              179030893 2 - 192294377 aa
i macFas5.chr3              C 0 C 0
s chlSab2.chr2               31684137 2 -  90373283 aa
i chlSab2.chr2              C 0 I 1310
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28119084 4951 +  39895921 I
e calJac3.chr21              37500055 3369 +  50472720 I
e papAnu2.chr3              167410332 1950 - 180432695 I

a score=9945.000000
s hg38.chr21_GL383581v2_alt     97407 34 +    116689 --------GACCTGGCCACTAAAAAATTT-------------------TTA--------AAAAGAAAAA
s panTro4.chr21              19601875 34 +  32799110 --------gacctggccactaaaaaattt-------------------tta--------aaaagaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34507722 34 +  48394510 --------gacctggccactaaaaaattt-------------------tta--------aaaagaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20031103 61 +  32716333 --------aaTAGGATTTCTGTTAAAGTTAACTCTTCTAGGCAGCATCTTAAACAGCATAAAAGAAAAA
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179030895 69 - 192294377 aaaaaaaaaGCAGGATTTCTGTACAAGTTAACTCTTCTAGGCAGCATCTTAAACAGCATAAAATAAAAA
i macFas5.chr3              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28119084 4951 +  39895921 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I

a score=102768.000000
s hg38.chr21_GL383581v2_alt     97441 294 +    116689 TAAggccagacgcagtg-ctcacgcctgtaatctcagcactttgggaggctgaggcaggtggataacctgaggtcgggagtttgagaccagcctgaccaacacggaaaacccccatctctctaaaaatac--aaaaaattagatgggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaaccctggaggtggaggttgcagtgagctgagattgcgccactgcactccagcccaggtgacagtgcgaga------cactg------tctcaaaaaaaaaa
s panTro4.chr21              19601909 295 +  32799110 TAAggccagacgcagtggctcacgcctgtaatctcagcactttgggaggctgaggcaggtggataacctgaggtcgggagtttgagaccagcctgaccaacacggaaaaaccccatctctctaaaaatac--aaaaaattagatgggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaaccctggaggtggaggttgcagtgagccgagattgcgccattgcactccagcccaggtgacagtgcgaga------cactg------tctcaaaaaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34507756 293 +  48394510 TAAggccaggcacagtggctcatgcctgtaatctcagcactttgggaggctgaggcaggcagatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccc--tgactctaaaaatac--aaaaaattagctgggcgtggtggcgcatgcctgtaatcccaggtactcgggaggctgaggcaggagaattgcttgaaccctagaggtggaggttgcagtgagccgagattgctccattgctctccagccaaggtgacagtgcgaga------cactg------tctcaaaaaaaaaa
i ponAbe2.chr21             C 0 C 0
s macFas5.chr3              179030964 254 - 192294377 -CAGGCCAGGTGAAGTGGCTCATGCTTGTACTC------------------------------------------------------ccagtgtggacaacatagtgagactccatctgtaaaaaacttttaagaagattagccaggtgtgatggtgtctgcctgtaatcccagctacacaggaggctgaggtgggaggatcacttgagcccaggagttggaggctgcagtgagccatgatcgtaccattgctctccaaactaagcaacagagtgagacctggccactaaaaaatttttaaaaagaaaa
i macFas5.chr3              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28119084 4951 +  39895921 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e nomLeu3.chr25              20031164   0 +  32716333 C

a score=910.000000
s hg38.chr21_GL383581v2_alt     97735 1 +    116689 a
s panTro4.chr21              19602204 1 +  32799110 a
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508049 1 +  48394510 a
i ponAbe2.chr21             C 0 C 0
s macFas5.chr3              179031218 1 - 192294377 a
i macFas5.chr3              C 0 I 979
s canFam3.chr31              28124035 1 +  39895921 A
i canFam3.chr31             I 4951 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e nomLeu3.chr25              20031164 0 +  32716333 C

a score=18554.000000
s hg38.chr21_GL383581v2_alt     97736 57 +    116689 aa--------------GCCACCAAGCAAAACTTCCTAAAAGTTGCCAGTAGCCATCCCCCTCTTCTGCTTC
s panTro4.chr21              19602205 60 +  32799110 aa-----------aaaGCCACCAAGCAAAACTTCCTAAAAGTTGCCAGTAGCCATCCCCCTCTTCTGCTTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508050 71 +  48394510 aagaaaaaaaaaaagaGCCACCAAGCAAAACTTCCTAAAAGTTGTCAGTAGCCATCACCCTCTTCTGCATC
i ponAbe2.chr21             C 0 C 0
s canFam3.chr31              28124036 47 +  39895921 --------------AAGCCACCAAGC-AAATTTCCTGAATGTTGCCAGTAGA---------CTTCTGTTCC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I
e nomLeu3.chr25              20031164  0 +  32716333 C

a score=39231.000000
s hg38.chr21_GL383581v2_alt     97793 91 +    116689 CAGGCCCAGTAAGGT--GCCTTATATCTC--TCAATCTCATCCTTCTCCCAGCCTTGCTTCTAAATGCACTCCAAggccaggcacagtggctcat
s panTro4.chr21              19602265 74 +  32799110 CAGGCCCAGTAAGGT--GCCTTATATCTC-------------------CCAGCCTTGCTTCTAAATGCACTCCAAggccaggcacagtggctcat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508121 93 +  48394510 CAGGCCCGGTAAGGT--GCCTTATATCTCTCTCAATCTCATCCTTCTCCCAGCCTTGCTTCTAAATGCACTCCAAggccaggcacagtagctcat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20031164 81 +  32716333 CAGGCCAGG------------TACATCTC--TCAATCTCATCCTTCTCCCAGCCTTGCTTCTAAATGCACTCCAAggcctggcacagtggctcat
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28124083 61 +  39895921 CAGGCTCAGTGAGGTGGGCCTTGTACCTC--CTTTCTTCTTCCTTCTTCCAGCCTTG--------------------------------GCTTAT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=58513.000000
s hg38.chr21_GL383581v2_alt     97884 119 +    116689 gcctgtaatcccagccctctgggaggcccaggtgggaggatcacttgagcctagggatttgaaccaacctgggcaacatagggagaccccatctctattta----tttaaaaaaaaa----gtaaaa
s panTro4.chr21              19602339 123 +  32799110 gcctgtaatcccagccctctgggaggcccaggtgggaggatcacttgagcctagggatttgaaccaacctgggcaacatagggagaccccatctctattta----tttaaaaaaaaaaaaaGTAAAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508214 123 +  48394510 gcctgtaatcccagcactctgggaggctgaggtgggaggatcacttgagcccagggatttgaaccaacctgggaaacatagggagaccccatctctatttattttttttaaaaaaaa----gtaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20031245 120 +  32716333 gcctgtaatcccagcactctgggaggccaagatgggaggatcacttgagcccagggatgtgaaccaacctgggctacatagggagaccccatctctattta----tttaaaaaaaaa---agtaaaA
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124144   0 +  39895921 C
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=199257.000000
s hg38.chr21_GL383581v2_alt     98003 301 +    116689 TTAAAATACACTCCAAGTGTCAACACTTCACGCAGAAAACAGAAATGTTGAAGTTAGCCTTGCTTCCCCAGCTGCTCAAGGACC----TTTTGAAATCTTCAACTGAGTGCCCAGCGAAGGC-----TGGGGAAGGGGCG--GGGACTGTCCATCCTCCTTCCCAATACCAGTGGTTTAT-CAGTGTATTCAGCCCACAAAGCAAGTCCCTTCTCTAGGTACAGGGG-AAAATTTCATTAGT-AAAAAAATAAGAATTTTCCCCTTCAATCCATTAAAATTATAAAAATACATAAAACAAGATAGAAATGACAGA
s panTro4.chr21              19602462 301 +  32799110 TTAAAATACACTCCAAGTGTCAACACTTCACGCAGAAAACAGAAATGTTGAAGTTAGCCTTGCCTCCCCAGCTGCTCAAGGACC----TTTTGAAATCTTCAACTGAGTGCCCAGCGAAGGC-----TGGGGAAGGGGCG--GGGACTGTCCATCCTCCTTCCCAATACCAGTGGTTTAT-CAGTGTATTCAGCCCACAAAGCAAGTCCCTTCTCTAGGTACAGGGG-AAAATTTCATTAGT-AAAAAAATAAGAATTTTCCCCTTCAATCCATTAAAATTATAAAAATACATAAAACAAGATAGAAATGACAGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508337 302 +  48394510 ttaaaataCACTTCAAGTGTCAACACTTCACGTAGAAAGCAGAAATGTGGAAGTTAGCCTTCCCTCTCCAGCTGCTCAAAGACC----TTTTGAAATCTTCAACTGAGTGCCCAGCGAAGGC-----TGGGGAAGGGGCG--GGGAGTGTCCATCCTCCTTCCCAATACCAATGGTTTAT-CAGTGTATTCAGCCCATAAAGCATGTCCCTTCTCTAGGTACAGGGG-AAAATTTCATCAGTAAAAAAAATAAGAATTTTTCCCTTCAATCCAATAAAATTATAAAAATACATAAAACAAGATAGAAATGACAGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20031365 302 +  32716333 TTAAAATACACTCCAAGTGTCAACACTTCATGCAGAAAACAGAAATGTTGAAGTTAGCCTTGCCTCCCCAGCTGCTCAAGGACC----TTTTGAAATCTTCAACTGAGTGCCCAGTGAAGGC-----TGGGGAAGGGGCA--GGGAGTGTCCATCCTCCTTCCCAATACCAGTGGTTTAT-CAGTGTATTCAGCCCACATAGCAAGTCCCTTCTCTAGGTACAGGGG-AAAATTTCATTAGTAAAAAAAATAAGAATTTTTCCCTTCAATCCATTAAAATTATAAAAATACATAAAACAAGATAGAAATGACAGA
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28124144 304 +  39895921 CTAAAATGTACTCTAAGTTTCATCGCTTCATGCAGAAAACAGGA---CTGAAGTTG--CTACTCCACCCAGCCTTTCAAGGACCATTTATTTATTACCTTCAACTGGGTGTCTTGTAAGAGTGTGTATGTGGGAGGGGAAATAGTGGTGTCTGT-CTCATTCCCGATGCAAGTGGTTTATAAAGTAGATTACAATTACAAAACAATTCTTTTCTCTAGGTACAGAAGTAAAATTCTGGTAGTAGGAAAAATAAGATCTTTTTTCTCCACACCATTAACATAATAAAAATACATAAA-----GTAGCAATGACAAT
i canFam3.chr31             C 0 I 204
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=28182.000000
s hg38.chr21_GL383581v2_alt     98304 36 +    116689 ATGTTCTCAATAAATTGACCATATAAAAGGCCATAC
s panTro4.chr21              19602763 36 +  32799110 ATGTTCTCAATAAATTGTCCATATAAAAGGCCATAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508639 36 +  48394510 ATGTTCTCAATAAATTGTCCATATAAAAGGCCATAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20031667 36 +  32716333 ATGTTCTCAATAAAGTGTCCATATAAAAGGCCATAC
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28124652 36 +  39895921 ATGTTCTTAATGAATTGTCCATTTAAAAAGCTGTGC
i canFam3.chr31             I 204 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=152330.000000
s hg38.chr21_GL383581v2_alt     98340 303 +    116689 TCTggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaagcacaaaaaattagccaggcatggcaccgggcaactgtagtcccaggtactctggaggctgaggcaggagaatggcatgaacccagaagcagagcttgcagtgagccgagatcgcgccactgcaatccagcctgggcaacagtgcaagactccgtctcaaaaaaaaaaaaaaaaaaaa---------------------
s panTro4.chr21              19602799 299 +  32799110 TCTggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagctcgagaccatcctggctaaaacagtgaaaccctgtctctactaaaagcacaaaaaattagccgggcatggtaccgggcaactgtagtcccagctactctggaggctgaggcaggagaatgacatgaacccaggagcagggcttgcagtgagccgagatcgcgccactgcaatccagcctgggcaacagtgcaagactccgtctcaaaaaaaaaaaaaaaa-------------------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34508675 303 +  48394510 TCTggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctttactaaaagtacaaaaaattagccggtcatagtagtgggcgcctgtagtcccagctactctggaggctgaggcaggagaatggcatgaacccaggaacggagcttgcagtgagccgagatcgcgccactgcaatccagcctgggcaacagtgcaagactccgtctcaaaaaagaaaaaaaaaaaaa---------------------
i ponAbe2.chr21             C 0 M 549
s nomLeu3.chr25              20031703 324 +  32716333 TCTggccgggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaagtacaaaaaattagccaggcatggtagcgggcgcctgtagtcccagctactccagaggctgaggcagaagaatggtgtgaacccaggagcggagcttgcagtgagccgagatcacgccactgcaatccagcctgggcgacagtgcaagactctgtctcaaaaaaaaaaataaaataaaataaaaaaTAAAAAAAATAAA
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124688   0 +  39895921 C
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=17718.000000
s hg38.chr21_GL383581v2_alt     98643 73 +    116689 GGCCATACTCATCCTCAGAGATTGCAACCAAACGATACATTAATTAATT----TAAAAAATGTTTTAAAGGTTATAT
s panTro4.chr21              19603098 76 +  32799110 -GCCATACTCATCCTCAGAGATTGCAACCAAACGATACattaattaattaatttaaaaaatGTTTCAAAGGTTATAT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20032027 77 +  32716333 GGCCATAGTCATCCTCAGAGGTTGCAACCAAACAATACATTAATTAATTAAATTTAAAAATGTTTTAAAGGTTATAT
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124688  0 +  39895921 C
e ponAbe2.chr21              34508978 549 +  48394510 M
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=8322.000000
s hg38.chr21_GL383581v2_alt     98716 17 +    116689 TCAGCCTAAGAATGATT
s panTro4.chr21              19603174 17 +  32799110 TCAGCCTAAGAATGATT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20032104 17 +  32716333 TCAGCCTAAGAATGATT
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28124688 17 +  39895921 TCAGCATAAGAATGTTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e ponAbe2.chr21              34508978 549 +  48394510 M
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=77420.000000
s hg38.chr21_GL383581v2_alt     98733 297 +    116689 CACACAAACttttttttttttttttt-----gagacggagtcttgctctgtcgcccaggctggaatgcagtggcacgatctcagctcactgcaacctccacctcccaggttcaagcaattctcctgccccagcctcgcgagtagctgggattacaggcgcgcaccaccacacccagctaattttgtatttttagtagagacagggttctgccttgttggtcaggctggtctcgaacccctgacctcaaatgatccaccta----gggctcccaaagtgctgggattacaggtgtgagccactgcac
s panTro4.chr21              19603191 306 +  32799110 CACACAAACttttttttttttttttttttttgagacggagtcttgctctgtcgcccaggctggaatgcagtggcacgatctcagctcactgcaacctccacctcccaggttcaagcgattctcctgccccagcctcgcgagtagctgggattataggcacgcaccaccacacccagctaattttgtatttttagtagagacagggttctgccttgttggtcaggctggtcttgaacccctgacctcaaatgatccacctacctcgggctcccaaagtgctgggattacaggtgtgagccactgcac
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20032121 296 +  32716333 CACACAAACtttttttttttt----------gagacggagtcttgctctgtcgcccaggttggaatgcagtggcatgatctcagctcactgcaacctccacctcccggattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcacaccaccacacccggctaattttgtatttttagtagagacagggttctgccttgttggtcaggctggtctcgaactcctgacctcaaatgatccacctacctcgagctcccaaagtggtgggattacaggtgtgagccactgcac
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124705   0 +  39895921 C
e ponAbe2.chr21              34508978 549 +  48394510 M
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=3492.000000
s hg38.chr21_GL383581v2_alt     99030 6 +    116689 ctagcc
s panTro4.chr21              19603497 6 +  32799110 ctagcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34509532 6 +  48394510 CTAGCC
i ponAbe2.chr21             M 549 C 0
s nomLeu3.chr25              20032417 6 +  32716333 ctagcc
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124705 0 +  39895921 C
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=84670.000000
s hg38.chr21_GL383581v2_alt     99036 148 +    116689 CACACAAACTTTGGAATCTTGATTACCTCTGAAAATCTTCGGGTAGACGGGGGAGTGTCCCAAGATTTTCATTTTGAACCACTGTTCATAATAG-------------------------GAAGAATAAAGTCAAATTACAGAG----AGAGAAATAAATTATGAAAGATTCCATGCT
s panTro4.chr21              19603503 150 +  32799110 CACACAAACTTTGGAATCTTGATTACCTCTGAAAATCTTTGGGTAGACGGGGGAGTGTCCCAAGATTTTCATTTTGAACCACTGTTCATAATAGTGA---------------------GGAAGAATAAAGTCAAATTACAGAG----AGA--AATAAATTATGAAAGATTCCATGCT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34509538 147 +  48394510 CACACAAAC-TTGGAATCTTGA-TACCTCTG-AAATCTTAGGGTAGACAAGGGAGTGTCCCAAGATTTTCA--TTGATCCACTATTCATAATAGTGA---------------------GGAAGAATAAAGTCAAATTACAGAG----AGAGAAATAAATTATGAAAGATTCCATGCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20032423 151 +  32716333 CACACAAACTTTGGAACCTTGATTACCTCTGAAAATCTTCGGGTAGATGGGGGAATGTCCCAAGATTTTCA-TTTGAACCACTATTTATAATAGCGA---------------------GAAAGAATAAAGTCAAATTACAGAG----AGAAAAATAAATTATGAAAGATTTCATGCT
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28124705 162 +  39895921 CACACAAACTTCAGGATCTTAATTACCTCTGAAAGTCTTAGGA-----GGGGGAGT---CCAAGATTTTCA-TTTGAATCACT----ATAATAACAAAATTTAAAGTAATTTAAAGCGGGGAGAATCCAAT--AACTACGggagactggaaacataaattatgagacatcccttgct
i canFam3.chr31             C 0 I 2709
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=78085.000000
s hg38.chr21_GL383581v2_alt     99184 160 +    116689 ATAGACCAGTGCCgtggcacatacctgtggtctcagctactcaggaggtaggaggatcgcttgagcccaggagtttgaggcttcagtgagctataatcgtgccactgttattcccgcctgggtgataggtgagaccctgtctcttaaaaaaaagaaagaa
s panTro4.chr21              19603653 160 +  32799110 ATAGACCAGTGCCgtggcacatacctgtggtctcagctactcaggaggtaggaggatcacttgagcccaggagtttgaggcttcagtgagctataattgtgccactgttattcccgcctgggtgataggtgagaccctgtctcttaaaaaaaagaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34509685 150 +  48394510 ATAGACCAGTGCTgtggcacatacctgtggtttcagctactc----------aggatcgcttgagcctaggagtttgaggcttcagtgagctataatcgtgccactgttattcccgcctgggtgataggtgagaccctgtctcttaaaaaaaaaaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20032574 159 +  32716333 ATAGACCAgtgccgtggcacatacctgtggtctcagctactcaggaggtaggaggatcgcttgagcccaggagttcgaggcttcagtgagctatgatcatgccactg-tattcccgcatgggtgataggtgagaccctgtctcaagaaagaaggaaagaa
i nomLeu3.chr25             C 0 I 120
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124867 2709 +  39895921 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I

a score=92863.000000
s hg38.chr21_GL383581v2_alt     99344 365 +    116689 aaac--------------------gaaagaaagaaACAGtgcagtcataaaagagaatgagatcatgtctttt--gcgggaacatggatggagctggaggccattattctcagcaaactaacgcagaaacagaaaaccaaacactgcatgttctcacttataaatgggagctacatgatgagaacttaggaacacaaggaaacaacagacactggggtctgcttgaggtgggagggtgggaggagggagcggaggaaaacagagagctattgggtactgggctaaatacctgcatgatgaagtaatctgtacaccaa-ccccccatgacataagtgcacctatgtaCCCCTTATAGGTGTAAGCCACCGCGCCCGGCCAGTAATTACA
s panTro4.chr21              19603813 369 +  32799110 aaaaaa----------------aagaaagaaagaaaCAGtgcagtcataaaagagaatgagatcatgtctttt--gcgggaacatggatggagctggaggccattattctcagcaaactaacgcagaaacagaaaaccaaacactgcatgttctcacttataaatgggagctaaatgatgagaacttaggaacacaaggaaacaacagacactggggtctacttgaggtgggagggtgggaggagggagaggaggaaaacagagaactattgggtactgggctaaatgcctgcatgatgaaataatctgtacaccaa-ccccccatgacataagtgtacctatgtaCCCCTTACAGGTGTAAGCCACCGCGCCCGGCCAGTAATTACA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34509835 388 +  48394510 gaaaaaaaagaaagaaagaaagaaaaaagaaagaaaTAGtgcagtcataaaagagaatgagatcacgtcttttgggggggaacatggatggagctggaggccgttattctcagcaaactaaatcagaaacaaaaaaccaaacactgcatgttctcacttataaatgggagctaaatgatgagaacttaggaacacaaggaaacaacagacactggggtctacttgaggtgggagggtaggaggagggagaggaggaaaacagagaactattgggtactgggctaaatacctgcgtgatgaaataatctgtacaccaacccccccatgacataagtgtacctatgtaCACCTTACAGGTGTAAGTCACCGCGCCTGGCCAGTAATTACA
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124867 2709 +  39895921 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e calJac3.chr21              37500055 3369 +  50472720 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=6519.000000
s hg38.chr21_GL383581v2_alt     99709 17 +    116689 ATAAGGAGACGCTATGT
s panTro4.chr21              19604182 17 +  32799110 ATAAGGAGACGCTATGT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34510223 17 +  48394510 ATAAGGAGACGCTATGT
i ponAbe2.chr21             C 0 C 0
s calJac3.chr21              37503424 17 +  50472720 ACAAGGAGGTGTGGAGT
i calJac3.chr21             I 3369 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124867 2709 +  39895921 I
e rheMac3.chr3              185187845 1306 - 198365852 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e papAnu2.chr3              167410332 1950 - 180432695 I
e macFas5.chr3              179031219 979 - 192294377 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=9048.000000
s hg38.chr21_GL383581v2_alt     99726 7 +    116689 ACAGTTG
s panTro4.chr21              19604199 7 +  32799110 ACAGTTG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34510240 7 +  48394510 ACAGTTG
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185189151 7 - 198365852 ACAGCTG
i rheMac3.chr3              I 1306 C 0
s macFas5.chr3              179032198 7 - 192294377 ACAGCTG
i macFas5.chr3              I 979 C 0
s papAnu2.chr3              167412282 7 - 180432695 ACAGCTG
i papAnu2.chr3              I 1950 C 0
s calJac3.chr21              37503441 7 +  50472720 TAAGATG
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124867 2709 +  39895921 I
e chlSab2.chr2               31684139 1310 -  90373283 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=94220.000000
s hg38.chr21_GL383581v2_alt     99733 37 +    116689 TCTCCCTCCAGATGACCTGGTCACTTCTCCACTCTTt
s panTro4.chr21              19604206 37 +  32799110 TCTCCCTCCAGATGACCTGGTCACTTCTCCACTCTTt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34510247 37 +  48394510 TCTCCCTCCAGATGACCTGGTCACTTCTCCACTCTTt
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185189158 37 - 198365852 TCTCCCTCCAGATGACCTGGTCACTTCTCCACTCTTt
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179032205 37 - 192294377 TCTCCCTCCAGATGACCTGGTCACTTCTCCACTCTTt
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167412289 37 - 180432695 TCTCCCTCCAGATGACTTGGTCACTTCTCCACTCTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31685449 37 -  90373283 TCTCCCTCCAGATGACCTGGTCACTTCTCCACTCTTt
i chlSab2.chr2              I 1310 C 0
s calJac3.chr21              37503448 37 +  50472720 CCTCCCTCCAGATGACCTGTTGACTTCTCCACTCTTt
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28124867 2709 +  39895921 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=17915.000000
s hg38.chr21_GL383581v2_alt     99770 6 +    116689 gggcta
s panTro4.chr21              19604243 6 +  32799110 gggcta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34510284 6 +  48394510 gggcta
i ponAbe2.chr21             C 0 I 2001
s rheMac3.chr3              185189195 6 - 198365852 gggctg
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179032242 6 - 192294377 gggctg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167412326 6 - 180432695 GGGCTG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31685486 6 -  90373283 gggctg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37503485 6 +  50472720 gggctg
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28127576 6 +  39895921 gggccg
i canFam3.chr31             I 2709 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=57965.000000
s hg38.chr21_GL383581v2_alt     99776 25 +    116689 aattgtgccccc-------ca--------------tgttgaagccc
s panTro4.chr21              19604249 25 +  32799110 aattgtgccccc-------ca--------------tgttgaagccc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34512291 24 +  48394510 aattgtg-cccc-------ca--------------tgttgaagccc
i ponAbe2.chr21             I 2001 C 0
s rheMac3.chr3              185189201 25 - 198365852 aattgtgccccc-------ca--------------tattgaagccc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179032248 25 - 192294377 aattgtgccccc-------ca--------------tattgaagccc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167412332 25 - 180432695 AATTGTGCCCCc-------ca--------------tattgaagccc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31685492 25 -  90373283 aattgtgccccc-------ca--------------tattgaagccc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37503491 32 +  50472720 aattgtgccccccaaaattca--------------tgttgaagccc
i calJac3.chr21             C 0 I 607
s canFam3.chr31              28127582 39 +  39895921 aattgctttccc-------ccctccccaaatttgttgctgaactcc
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=2884779.000000
s hg38.chr21_GL383581v2_alt     99801 1197 +    116689  
s panTro4.chr21              19604274 1205 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34512315 1199 +  48394510  
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185189226 1187 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179032273 1187 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167412357 1180 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31685517 1184 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37504130 1104 +  50472720  
i calJac3.chr21             I 607 C 0
s canFam3.chr31              28127621 1281 +  39895921  
i canFam3.chr31             C 0 I 362
e mm10.chr16                 91619089 2276 +  98207768 I
e nomLeu3.chr25              20032733  120 +  32716333 I

a score=2548.000000
s hg38.chr21_GL383581v2_alt    100998 1 +    116689 T
s panTro4.chr21              19605479 1 +  32799110 T
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513514 1 +  48394510 T
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185190413 1 - 198365852 T
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179033460 1 - 192294377 T
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167413537 1 - 180432695 T
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31686701 1 -  90373283 T
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37505234 1 +  50472720 T
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e nomLeu3.chr25              20032733 120 +  32716333 I

a score=469059.000000
s hg38.chr21_GL383581v2_alt    100999 182 +    116689 TTggccaggtgtaatggttcacccctctaatctcaga-actttgggaggttaaagggggaggattgcttgag----------------tgtagaagttcgagag---------------cagcctggacaacacaatgagaccctaactc--------tacaaaatacaaaaattagccaggcatggtggcatgagactgtagtcccagctaatcaggaggc
s panTro4.chr21              19605480 182 +  32799110 TTAgccaggtgtaatggttcacccctctaatctcaga-actttgggaggttaaagggggaggattgcttgag----------------tgtagaagttcgagag---------------cagcctgcacaacacagtgagaccctaactc--------tacaaaatacaaaaattagccaggcatggtggcatgagactgtagtcccagctaatcaggaggc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513515 182 +  48394510 TTggccaggtgtaatggttcacccctctaatctcaga-actttgggaggttaaagggggaggattgcttgag----------------tgtagaagttcgagag---------------cagcctggacaacacagtaagaccctaactc--------tacaaaatacaaaaattagccaggcatggtggcacgagactgtagtcccaactaatcaggaggc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20032853 222 +  32716333 ttagccaggcatggtggtgggtgcctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaattagccaggtttggtggcaccagcctgtagtcccagctaatcaggaggc
i nomLeu3.chr25             I 120 C 0
s rheMac3.chr3              185190414 182 - 198365852 TTggccaggtgtaatggttcacatctgtaatttcaga-actttgggaggttaaagggggaggattgcttgag----------------tttaggagttggagag---------------cagcctggacaacacagtgagaccctaacgc--------tataaaatacaaaaattagccaggcatggtggcacaagcctgtggtcccagctactcaggaggc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179033461 182 - 192294377 TTggccaggtgtaatggttcacatctgtaatttcaga-actttgggaggttaaagggggaggattgcttgag----------------tttaggagttggagag---------------cagcctggacaacacagtgagaccctaactc--------tataaaatacaaaaattagccaggcatggtggcacaagcctgtggtcccagctactcaggaggc
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167413538 180 - 180432695 TTGGCCAGGTgtaatggttcacacctgtaatttcaga-actttgggaggttaaagggggaggattgcttgag----------------tttaggagttggagag---------------cagtctggacaacacagtgagaccctaactc--------tataaaatacaaaaattagccaggcatggtggcacgagcctgtagtccca--tactcaggaggc
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31686702 182 -  90373283 TTggccaggtgtaatggttcacacctgtaatttcaga-actttgggaggttaaagggggaggattgcttgag----------------tttaggagttggagag---------------cagcctggacaacacagtgagaccctaactc--------tacaaaatacaaaaattagccaggcatggtggcacgagcctgtagtcgcagctactcaggaggc
i chlSab2.chr2              C 0 I 9
s calJac3.chr21              37505235 179 +  50472720 TTggccaggtgtaatggttcactcctgtaatctcagc-actttgggaggtaaaagggggaggattgcttgag----------------tttaggagtgtgagag---------------cag-ctggacaacacagtgagaccgtaac----------tataaaatacaaaaattagccaggcatggtagcacaagcctgaagtcccagctactaaggaggc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I

a score=17990.000000
s hg38.chr21_GL383581v2_alt    101181 7 +    116689 tgaggtg
s panTro4.chr21              19605662 7 +  32799110 tgaggtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513697 7 +  48394510 tgaggtg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033075 7 +  32716333 tgaggtg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185190596 7 - 198365852 tgaggtg
i rheMac3.chr3              C 0 I 2
s macFas5.chr3              179033643 7 - 192294377 tgaggtg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167413718 7 - 180432695 cgaggtg
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37505414 7 +  50472720 tgaggtg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e chlSab2.chr2               31686884 9 -  90373283 I

a score=1507.000000
s hg38.chr21_GL383581v2_alt    101188 2 +    116689 tg
s panTro4.chr21              19605669 2 +  32799110 tg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513704 2 +  48394510 gg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033082 2 +  32716333 gg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179033650 1 - 192294377 -g
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167413725 1 - 180432695 -g
i papAnu2.chr3              C 0 I 1
s calJac3.chr21              37505421 2 +  50472720 gg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185190603 2 - 198365852 I
e chlSab2.chr2               31686884 9 -  90373283 I

a score=86453.000000
s hg38.chr21_GL383581v2_alt    101190 90 +    116689 agaatcacttgagcccagaaggtcaagcctgcagtgtgccgtgatcatgccagcgcacttcagcatgggtgacagagcaagactctgtct
s panTro4.chr21              19605671 90 +  32799110 agaatcacttgagcccaggaggtcaagcctgcagtgtgccgtgatcatgccagcgcacttcagcatgggtgacagagcaagactctgtct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513706 90 +  48394510 aggatcacttgagcccaggaggtcaagcctgcagtgtgctgtgatcatgccagtgcacttcagcatgggtgacagagcaagaccctgtct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033084 90 +  32716333 aggatcacttgagcccaggaggtcaagcctgcagtgtgccgtgatcatgccagtgcacttcagcatctgtgacagaacaagaccctgtca
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167413727 64 - 180432695 --------------------------ggttgcagtgagccaagatcgcgtcactgcactaaagcctgggcaacagagtgagactccctct
i papAnu2.chr3              I 1 C 0
s calJac3.chr21              37505423 90 +  50472720 agaatcacttgagtccaggaggtcaagcctacagtgtgccgtgatcatgccagtgcacttcatcatgggtgacagagcaagaacctatct
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185190603  2 - 198365852 I
e chlSab2.chr2               31686884  9 -  90373283 I
e macFas5.chr3              179033651  1 - 192294377 I

a score=3159.000000
s hg38.chr21_GL383581v2_alt    101280  9 +    116689 aaaaaa-----------aaa
s panTro4.chr21              19605761  9 +  32799110 aaaaaa-----------aaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513796 10 +  48394510 aaaaaa----------gaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033174 20 +  32716333 aaaaaaaaaaaaaaaaaaaa
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167413791  9 - 180432695 caaaaa-----------aaa
i papAnu2.chr3              C 0 I 220
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185190603  2 - 198365852 I
e calJac3.chr21              37505513  0 +  50472720 C
e chlSab2.chr2               31686884  9 -  90373283 I
e macFas5.chr3              179033651  1 - 192294377 I

a score=116318.000000
s hg38.chr21_GL383581v2_alt    101289 222 +    116689 aaaggccgggcgtggtggctcacacctgtaaacccagcactttgggaggccgagacgagcggatcatttgaggtcaggagttcgagaccagcctgaccaaaatggtgaaacccccgtctttattaaaaaatacaaaaattagctgggagtggtggcagtcgcctgtaatctcagctactcggcagactgaggcaggagaatcacttgaacccaggaggcgga
s panTro4.chr21              19605770 222 +  32799110 aaaggccgggcgtggtggctcacacctgtaaacccagcactttgggaggccgagacgagcggatcatttgaggtcaggagttcgagaccagcctgaccaaaatggtgaaacccctggctttattaaaaaatacaaaaattagctgggcgtggtggcaggcgcctgtaatctcagctactcggcagactgaggcaggagaatcacttgaacccaggaggcgga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34513806 222 +  48394510 aaaggctgggcgtggtggctgacacctgtaaacccagtactttgggaggccgagacgagcggatcatttgaggttaggagttcgagaccagcctgaccaaaatggtgaaacccccgtctttattcaaaaatacaaaaattagctgggcgtggtggcagacgcctgtaatctcagctacttggcagactgaggcaggagaatcacttgaacccaggaggcgga
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033194 222 +  32716333 aaaggctgggcgtggtggctcacacctgtaaattcagcactttgggaggccaagaagagtggatcatttgagatcaggagttcgagaccaggctgaccaaaatgatgaaaccctcgtctttattaaaaaatacaaaaattagccaggagtggtggtgggcgcctgtaatctcagctactcggcagactgaggcaggagaatcacttgaacccaggaggcgga
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185190603   2 - 198365852 I
e calJac3.chr21              37505513   0 +  50472720 C
e chlSab2.chr2               31686884   9 -  90373283 I
e papAnu2.chr3              167413800 220 - 180432695 I
e macFas5.chr3              179033651   1 - 192294377 I

a score=133392.000000
s hg38.chr21_GL383581v2_alt    101511 71 +    116689 ggttgcagtgagccaagatcacgccactgcactagagcctgggcaacagagtgagactccctctcaaaaaa
s panTro4.chr21              19605992 71 +  32799110 ggttgcagtgagccaagatcacgccactgcactagagcctgggcaacagagtgagactccctctcaaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514028 71 +  48394510 ggttgcagtgagcgaagatcacaccactgcactagagcctgggcaacagagtgagactccctctcaaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033416 71 +  32716333 ggttgcagtgagccaagatcacgccactgcactagagcctgggcaacagagtgagactgcctctcaaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185190605 71 - 198365852 ggttgcagtgagccaagatcgcgtcactgcactaaagcctgggcaacagagtgagactccctctcaaaaaa
i rheMac3.chr3              I 2 C 0
s macFas5.chr3              179033652 71 - 192294377 ggttgcagtgagccaagatcgcgtcactgcactaaagcctgggcaacagagtgagactccctctcaaaaaa
i macFas5.chr3              I 1 C 0
s chlSab2.chr2               31686893 71 -  90373283 ggttgcagtgagccaagatcgcgtcactgcactaaagcctgggcaacagagtgagactccctgtcaaaaaa
i chlSab2.chr2              I 9 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e calJac3.chr21              37505513  0 +  50472720 C
e papAnu2.chr3              167413800 220 - 180432695 I

a score=793385.000000
s hg38.chr21_GL383581v2_alt    101582 370 +    116689 aaaaaaaaaaaaaaaaaGTTGCgtggtttccaatacttggttttcaacaaaagtgaaggaggatctaat-agactcctcagctgaatatttcatttgaaatgattttcagtggtaga----ttttcctggtgcatataactgaagcattcaaggagttgagtgatattgttataacaaCTA-------TTTTTTTTTCCTGTGACTTTCTGGAGTTTGGTGATGTCGGAAATTTAAAATGCTGTTTGGggccaggtgcggtggctcatg-cctgtaatcccagcactttgggaggctgaagtgggcggatcacctgaggtcaggagttcgagaccagactggccaacatggtgaaaccctgtctctactgaaaatataaaaat
s panTro4.chr21              19606063 367 +  32799110 aaaaaaaaaaaaaa---GTTGCgtggtttccaatacttggttttcaacaaaagtgaaggaggatctaat-agactcctcagctgaatatttcatttgaaatgattttcagtggtaga----ttttcctggtgcatataactgaagcattcaaggagttgagtgatattgttataacaaCTA-------TTTTTTTTTCCTGTGACTTTCTGGAGTTTGGTGATGTCGGAAATTTAAAATGCTGTTTGGggccaggtgcggtggctcatg-cctgtaatcccagcactttgggaggctgaagtgggcggatcacctgaggtcaggagtttaagaccagactggccaacatggtgaaaccctgtctctactgaaaatataaaaat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514099 365 +  48394510 aaaaaaaaaaaaaa----TTGTgtggtttccaatacttggctttcaacaaaagtgaaggaggatctaat-agactcctcagctgagtatttcatttgaaatgattttcagtggtaga----ttttcctggtggatatgactgaagcattcaaggagttgagtgatattgttataacaaCTA--------TTTTTTTTCCTGTGACTTTCTGGAGTTTGGTGATGTCGGAAATTTAAAATGCTGTTTGGggccaggtgcggtggctcacg-cttgtaatcccagcactttgggaggctgaagtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactgaaaatataaaaat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033487 357 +  32716333 aaaaaaaa----------TTGCTtggtttccaatacttggttttcaacgaaagtgaaggaggctctaat-agactcctcagctgaatatttcatttaaaatgattttcagtggtaga----ttttcctggtgcatataactgaagcattcaaggagttgagtgatactgttataacaacaa--------ttttttTTCCTGTGACTTTCTGGAGTTTGATGATGTCGAAAATTTAAAATGCTGTTTGGggccagatgcagtggctcact-cctgtaatcccagcactttgggaggctgaagtgggtggatcacctgaagtcaggagttcgagaccag--cggccaacatggtgaaaccctgtctctactgaaaatataaaaat
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185190676 359 - 198365852 aaa---------------TTGCAtggtttccaataattggttttcaacaaaagtaaaggaggatctaat-agactcctcaactgaatatttcatttaaaatgattttcaatggtata----ttttcctggtgcatgtaattgaagctttcaaggagttgagtgatactgttataacaaCTATT---TTTTTTTTTTTCCTGTGACTTTCTGGAGTTTGGTGATGTAGGAAATTTAAAATGCTGTTTGGggccaggcgcagtggctcaca-cctgtaatctcagcactttgggaggttgaagtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactgaaaatataaaaat
i rheMac3.chr3              C 0 I 15
s macFas5.chr3              179033723 357 - 192294377 aaa---------------TTGCAtggtttccaataattggttttcaacaaaagtaaaggaggatctaat-agactcctcaactgaatatttcatttaaaatgattttcaatggtata----ttttcctggtgcatgtaattgaagctttcaaggagttgagtgatactgttataacaaCTA-----TTTTTTTTTTTCCTGTGACTTTCTGGAGTTTGGTGATGTAGGAAATTTAAAATGCTGTTTGGggccaggcgcagtggctcaca-cctgtaatctcagcactttgggaggttgaagtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactgaaaatataaaaat
i macFas5.chr3              C 0 I 8
s chlSab2.chr2               31686964 357 -  90373283 aaa---------------TTGCAtggtttccaataattggttttcaacaaaagtaaaggaggatctaataagactcctcaactgaatatttcatttaaaatgattttcaatggtata----ttttcctggtgcatgtaactgaagctttcaaggagttgagtgatactgttataaaaactA------TTTTTTTTTTCCTGTGACTTTCTGGAGTTTGATGATGTGGGAAATTTAAAATGCTGTTTGGggccaggcgcagtggctcaca-cctgtaatctcagcactttgggaggctgaagtgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtttctactgaaaatataaaaat
i chlSab2.chr2              C 0 I 28
s calJac3.chr21              37505513 381 +  50472720 aaaaaaaaagaaaaaaaTTTGGTtggtttccaatacttggtttccaacaaaagtgaaggaggagctaat-agactgctcatctgaatattttatttaaaatgatttccaacgatagattttttttcctggtacatataactgaagcattcaagaaattgagtgatactgctataacTACTGTTTTGTTTTGTTTTTTTCTGTGCCTTTCTGGAGTTTGGTGATGTGGGAAATTTTAAATGCTGCTTCGggcccggtgcggtggctcacaccctataatc-cagcactttgggaggccgaagcaggtggatcagctaaggtcaggaattcaagaccagcctggccaacatactgaaaccccgtctctactgcaaatacaaaaat
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e papAnu2.chr3              167413800 220 - 180432695 I

a score=7095.000000
s hg38.chr21_GL383581v2_alt    101952 5 +    116689 tagct
s panTro4.chr21              19606430 5 +  32799110 tagct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514464 5 +  48394510 tagct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033844 5 +  32716333 tagct
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179034088 5 - 192294377 tagct
i macFas5.chr3              I 8 C 0
s calJac3.chr21              37505894 5 +  50472720 tagct
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035 15 - 198365852 I
e chlSab2.chr2               31687321 28 -  90373283 I
e papAnu2.chr3              167413800 220 - 180432695 I

a score=117551.000000
s hg38.chr21_GL383581v2_alt    101957 137 +    116689 gggagtccgggcatggtggc---tgtttgtaatcccagaactttgggaggccaaggccggcagatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaaatta
s panTro4.chr21              19606435 137 +  32799110 gggagtccgggcatggtggc---tgtttgtaatcccagaactttgggaggccaaggccggcagatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaaacta
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514469 137 +  48394510 gggaggccgggcacggtggc---tgtttgtaatcccagaactttgggaggccaaggcgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccatctctactacaaatacaaaaatta
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033849 137 +  32716333 gggAggccgggcacggtggc---tgtttgtaatcctggaactttgggaggccaaggcaggcggatcatctgaggtcgggagttcgagaccggcctgaccaacatggagaaaccccatctctactaaaaatgcaaaaatta
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179034093 140 - 192294377 gggAggccgggcatggtggctcatgcttgtaatcccagcactttgggaggacaaggcgggcggatcacatgaggtcgggagttcgagaccagcctgaccaacgtggagaaaccccatctctactaaaaatacaaaaatta
i macFas5.chr3              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035  15 - 198365852 I
e calJac3.chr21              37505899   0 +  50472720 C
e chlSab2.chr2               31687321  28 -  90373283 I
e papAnu2.chr3              167413800 220 - 180432695 I

a score=20317.000000
s hg38.chr21_GL383581v2_alt    102094 20 +    116689 gctgggcgtggtggcgcgtg
s panTro4.chr21              19606572 20 +  32799110 gctgggcgtggtggcgcgtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514606 20 +  48394510 gctgggcgtggtggcacgtg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20033986 20 +  32716333 gctggccgtggtggcgcgtg
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179034233 20 - 192294377 gttgggtgtggtggtgcgtg
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167414020 20 - 180432695 gccaggcgcagtggctcaca
i papAnu2.chr3              I 220 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035 15 - 198365852 I
e calJac3.chr21              37505899  0 +  50472720 C
e chlSab2.chr2               31687321 28 -  90373283 I

a score=25589.000000
s hg38.chr21_GL383581v2_alt    102114 56 +    116689 cctgtaatcccagctacctgggaggctgaggcaggagaatcacttgaacccggga---------------g
s panTro4.chr21              19606592 56 +  32799110 cctgtaatcccagctacctgggaggctgaggcaggagaatcacttgaacccggga---------------g
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514626 56 +  48394510 cctgtaatcccagctacctgggaggttgaggcaggagaatcacttgaacccggga---------------g
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034006 49 +  32716333 cctgtaatcccagctacctg----------------------catataccccagaccgttaacaccttccg
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167414040 56 - 180432695 cctgtaatctcagcactttgggaggttgaagtgggcggatcacctgaggtcagga---------------g
i papAnu2.chr3              C 0 I 7
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035 15 - 198365852 I
e calJac3.chr21              37505899  0 +  50472720 C
e chlSab2.chr2               31687321 28 -  90373283 I
e macFas5.chr3              179034253  0 - 192294377 C

a score=21349.000000
s hg38.chr21_GL383581v2_alt    102170 38 +    116689 gcataggttgcagtgagctgagatcttgccactgcact
s panTro4.chr21              19606648 38 +  32799110 gcataggttgcagtgagctgagatcttgccactgcact
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514682 38 +  48394510 gcataggttgcagtgagctgagatctcgccactgcact
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034055 38 +  32716333 gcataggttgcagtgagctgagatctcgccactgcact
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035 15 - 198365852 I
e calJac3.chr21              37505899  0 +  50472720 C
e chlSab2.chr2               31687321 28 -  90373283 I
e papAnu2.chr3              167414096  7 - 180432695 I
e macFas5.chr3              179034253  0 - 192294377 C

a score=26592.000000
s hg38.chr21_GL383581v2_alt    102208 81 +    116689 ccagtctgggcgacagagctagactccgtctcaac--aa-aacaaaaaacaaaacaaaacaaaacaaaaaaaaGCctgggtgtg
s panTro4.chr21              19606686 79 +  32799110 ccagtctgggtgacagagctagactccgtctcaaa--aa-aacaaaa--caaaacaaaacaaaacaaaacaaaGCctgggtgtg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514720 58 +  48394510 ccagtctgggcgacagagctagagtccgtctcaaa--aa-aaaaaaa-----------------------aaaggctgggtgcg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034093 59 +  32716333 ccagtctgggtgacagagttagactctgtctcaat--aacaacaaaa-----------------------aaaggacgggtgtg
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167414103 78 - 180432695 ccagcctggccaacatggtgaaaccctgtctctactgaa-aatataa--aaatataaaaattagctg---ggaggccgggcaca
i papAnu2.chr3              I 7 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035 15 - 198365852 I
e calJac3.chr21              37505899  0 +  50472720 C
e chlSab2.chr2               31687321 28 -  90373283 I
e macFas5.chr3              179034253  0 - 192294377 C

a score=57790.000000
s hg38.chr21_GL383581v2_alt    102289 53 +    116689 gtggctcacgcctgtaatcccagcaa--------------------------------------tttgggaggccgaggcaggtggatcac
s panTro4.chr21              19606765 53 +  32799110 gtggctcacgcctgtaatcccagcaa--------------------------------------tttgggaggccgaggcaggtggatcac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514778 91 +  48394510 gtggctcacgcctgtaatcccagcAATTTACAGGCGTGAAATTAcacgcctgtaatctcagcactttgggaggccaaggagggtggatcac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034152 53 +  32716333 gtggcttatgcctgtaatcccagcaa--------------------------------------tttgggaggccaaggtgggtggatcat
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167414181 53 - 180432695 gtggctcatgcttgtaatcccagcac--------------------------------------tttgggaggacaaggtgggcggatcac
i papAnu2.chr3              C 0 I 2
s chlSab2.chr2               31687349 53 -  90373283 gtggctcatgcttgtaatcccagcac--------------------------------------tttgggaggccaaggtgggcggatcac
i chlSab2.chr2              I 28 I 2
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e rheMac3.chr3              185191035 15 - 198365852 I
e calJac3.chr21              37505899  0 +  50472720 C
e macFas5.chr3              179034253  0 - 192294377 C

a score=122267.000000
s hg38.chr21_GL383581v2_alt    102342 73 +    116689 gaggtcaggagtta-gagaccagcctggccaagatggtgaaaccccatctctactaaaaatacaaaaattagcc
s panTro4.chr21              19606818 74 +  32799110 gaggtcaggagttaagagaccagcctggccaagatggttaaaccccatctctactaaaaatacaaaaattagcg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514869 73 +  48394510 gaggtgaggagtta-gagaccagcctggccaagatggtgaaaccccatctctactaaaaatacaaaaattagcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034205 73 +  32716333 gaggtcaggagtta-gagaccagcctggccaagatggtgaaaccccatctctactaaaaatacaaaaattagct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185191050 73 - 198365852 gaggccgggagttc-gagaccagcctgaccaacgtggagaaaccccatctctactaaaaatacaaaaattagtt
i rheMac3.chr3              I 15 C 0
s papAnu2.chr3              167414236 73 - 180432695 gaggtcgggagttc-gagaccagcctgaccaacgtggagaaaccccatctctactaaaaatacaaaaattaatt
i papAnu2.chr3              I 2 C 0
s chlSab2.chr2               31687404 73 -  90373283 gaggtcgggagttc-gagaccagtctgaccaacatggagaaaccccatctctactaaaaatacaaaaattagtt
i chlSab2.chr2              I 2 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e calJac3.chr21              37505899  0 +  50472720 C
e macFas5.chr3              179034253  0 - 192294377 C

a score=29513.000000
s hg38.chr21_GL383581v2_alt    102415 17 +    116689 gggcgtggtagcgggtt
s panTro4.chr21              19606892 17 +  32799110 gggcgtggtagcgggtt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514942 17 +  48394510 gggtgtggtagcgggtt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034278 17 +  32716333 gggcgtggtagcgggtt
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185191123 17 - 198365852 gggtgtggtggtgcgtg
i rheMac3.chr3              C 0 C 0
s papAnu2.chr3              167414309 17 - 180432695 gggtgtggtggtgcgtg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31687477 17 -  90373283 gggtgtggtggtgcgtg
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37505899 17 +  50472720 gggcatgggggcagatg
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I
e macFas5.chr3              179034253  0 - 192294377 C

a score=373941.000000
s hg38.chr21_GL383581v2_alt    102432 130 +    116689 cctgtaatcccagctacttgggaggctgaggca-gagaattgcttgaatcggggaggcagagtttgcagtgagccgagattgcaccactgcactccagccttggtgacagagtgagactctgactcaaaaa
s panTro4.chr21              19606909 130 +  32799110 cctgtaatcccagctacttgggaggctgaggca-gagaattgcttgaaccggggaggcagagtttgcagtgagccgagattgcaccactgcactccagccttggtgacagagtgagactctgactcaaaaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34514959 130 +  48394510 cctgtaattccagctactcgggaggctgaggca-gagaattgcttgaacccggaaggcggagtgtgcagtgagccgagatcgcaccactgcactccggccttggtgacagagtgagactctgactcaaaaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034295 129 +  32716333 cctgtaatcccagct-ctcgggaggctgaggca-gagaattgcttgaacccgggaggcagagtttgcagtgagccgagatcgtgccactacactccagccttggtgacagagtgagactctgtctcaaaaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185191140 129 - 198365852 cctgtaatcccagctacttaggaggctgaggca-gagaactgcttgaacccaggaggcagaggttgcagtgagctgagatggcaccactgcactccagccttggtgacagagtgagattctgcctc-aaaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179034253 129 - 192294377 cctgtaatcccagctacttgggaggctgaggca-gagaactgcttgaacccaggaggcagaggttgcagtgagctgagatggcaccactgcactccagccttggtgacagagtgagactctgcctc-aaaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167414326 127 - 180432695 cctgtaatcccagctacttgggaggctgaggca-gagaactgcttgaacccaggaggcagaggttgcagtgagctgagatggcaccactgcacgccagccttggtgacagagtgagactctgcctc---aa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31687494 130 -  90373283 cctgtaatcccagctacttgggaggctgaggca-gagaactgcttgaacccaggaggcagaggttgcactgagctgagatggcaccactgcactccagccttggtgacagagtgagactctgcctcaaaaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37505916 131 +  50472720 cctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgagatcatgtcactgcactccagcctaggtgacagagtgagactccatctcaaaaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28128902 362 +  39895921 I

a score=579033.000000
s hg38.chr21_GL383581v2_alt    102562 173 +    116689 aaaaaa---aaa--------aaTTGTTGTTGAGGTTTCAGTGTCCACAGATATTTCAATTCATGAAACTTTCA-TTTTATAAAGCAAAATCAACTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT--GGCTCAGGAGTTAGCTTCTTAAATAAGTTTACACATGAGGA
s panTro4.chr21              19607039 171 +  32799110 aaaaaa---aaa----------TTGTTGTTGAGGTTTCAGTGTCCACAGATATTTCAATTCATGAAACTTTCA-TTTTATAAAGCAAAACCAAGTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT--GGCTCAGGAGTTAGCTTCTTAAATAAGTTTACACATGAGGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515089 176 +  48394510 aaaaaa---aaa------aaaaTTGTTGTTGAGGTTTCAGTGTCCACAGATATTTCAATTCATGAAACTTTCA-TTTTATAAAGCAAAATCAGCTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT-GGGCTCAGGAGTTAGCCTCTTAAATAAGTTTACACATGAGGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034424 171 +  32716333 aaaaaa---aa-----------TTGTTGTTGAGGTTTCAGTGTCCACAGATATTTCAATTCGTGAAACTTTCA-TTTCATAAAGCAAAATCAACTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAACACAGGT-GGGCTCAGGAGTTAGCTTCTTAAATAAGTTTACACATGAGGA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185191269 172 - 198365852 aaaaaa---aaa----------TTGTTGTTGAGGTTTCAGTGTCCATAGATATTTCAATTCATGAAACTTTCG-TTTTATAAAGCAAAATCAACTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT-GGGCTTAGGAGTTAGCTTCTTAAATAAGGTTACACATgagga
i rheMac3.chr3              C 0 I 639
s macFas5.chr3              179034382 172 - 192294377 aaaaaa---aaa----------TTGTTGTTGAGGTTTCAGTGTCCATAGATATTTCAATTCATGAAACTTTCG-TTTTATAAAGCAAAATCAACTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT-GGGCTTAGGAGTTAGCTTCTTAAATAAGGTTACACATgagga
i macFas5.chr3              C 0 I 223
s papAnu2.chr3              167414453 172 - 180432695 aaaaaa---aaa----------ttgttgttgaGGTTTCAGTGTCCATAGATATTTCAATTCATGAAACTTTCG-TTTTATAAAGCAAAATCAACTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT-GGGCTTAGGAGTTAGCTTCTTAAATAAGGTTACCCatgagga
i papAnu2.chr3              C 0 I 218
s chlSab2.chr2               31687624 172 -  90373283 aaaaaa---aaa----------TTGTTGTTGAGGTTTCAGTGTCCATAGATATTTCAATTCATGAAACTTTCG-TTTTATAAAGCAAAATCAACTTGTAATATTAAAATCTTCACATCTTTATTGCAATGCTCAGAATACAGGT-GGGCTTAGGAGTTAGCTTCTTAAATAAGGTTACACGTgagga
i chlSab2.chr2              C 0 I 649
s calJac3.chr21              37506047 183 +  50472720 aaaaaa---aaaaagaaaaaaaTTGTTGTTTGGGTTTCAGTGTCCACAGATATTTCAATTCATGAAACTTTCATTTTTATAAAGCAAAATTAACTTGGAATATTAAAATCTTCACCTCTTTATTCCAGTGCTCAGAATACAGGT-GGGCTCAGGAGTTAGCTTCTTAAACAGGCTTACACACGAGGA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28129264 165 +  39895921 -AAAAATTTAAA----------GTGCAGTTTGACTCTGGGTGTGCACAAATACTTCAATTCATGAA--------CCTTAAAA---AAAATCGATTTGGAATACTGAGATCTTCATTCTTTTATTGCAATGCTCAGGATACAGGCAGGGCTCAGGAGTTAGCATTTGCACTAAGTTGACCCATGAGAA
i canFam3.chr31             I 362 C 0
e mm10.chr16                 91619089 2276 +  98207768 I

a score=48049.000000
s hg38.chr21_GL383581v2_alt    102735 41 +    116689 TTATCAGGTTAACAGATGGGGGATTTGAGGATTAGGCTTGC
s panTro4.chr21              19607210 41 +  32799110 TTATCAGGTTAACAGATGGGGGATCTGAGGATTAGGCTTGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515265 41 +  48394510 TTATCAGGTTAACAGATGGGGGATTTGAGGATTAGGCTTGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034595 41 +  32716333 TTATCAGGTTAACAGATGGGGGATTTGAGGATGAGGCTTGC
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37506230 41 +  50472720 TTATCAGGTTAACAGATGGGGGATTTGAGGATTAGTTTTAC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28129429 40 +  39895921 TTGCCAGGTTAACAGATGGAGGAT-TGAGGATTAGGAGTGC
i canFam3.chr31             C 0 I 426
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185191441 639 - 198365852 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=3830.000000
s hg38.chr21_GL383581v2_alt    102776 5 +    116689 TACTG
s panTro4.chr21              19607251 5 +  32799110 TACTG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515306 5 +  48394510 TACTG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034636 5 +  32716333 TACTG
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37506271 5 +  50472720 TACTC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28129469 426 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=137501.000000
s hg38.chr21_GL383581v2_alt    102781 177 +    116689 AGTCTTTAATATGATTTCTGTTACAAAGCCTGGAAGTTGGAAGTTCTACCTATATTCATTTAAAAGACTTCATGTTCTGAATGTGAAGCATGTTCAATGTACTC--GTTGTATTTAAAAAAACTATGAATCAAA-TTTTTTATAAAAAAA-----GAtttttttttt---tttttt----taggccaggcgc
s panTro4.chr21              19607256 176 +  32799110 AGTCTTTAATATGATTTCTGTTACAAAGCCTGGAAGTTGGAAGTTCTACCTATATTCATTTAAAAGACTTCATGTTCTGAATGTGAAGCATGTTCAATGTACTC--GTTGTATTAAAAAAAACTATGAATCaaa-ttttttattaaaaaa-----gatttttttttt---tttttt-----aggccaggcgc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515311 184 +  48394510 AGTCTTTAATATGCTTTCTGTTACAAAGCCTGGAAGTTGGAAGTTCTACCTCTATTCATTTAAAAGACTTCATGTTCTGAATGTGAAGTGTGTTCAATGTACTCTTGTTGTATTTAAAAAAACTATGAATCAAA-TTTTTTATAAAAAAA----TGAtttttttttt---tttttttttttAggccaggcac
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034641 177 +  32716333 AGTCTTTAATATGCTTTCTGTTACAAAGCCTGGAAGTTGGAAGTTCTACCTATAGTCATTTAAAAGACTTCATGTTCTGAATGTGTAGTATGTTCAATGTACTCTTGTTGTATTTAAAAAAACTATGAATCAAATTTTTTTATAAAAAAA----TGATTTTTTTTTT---TTT--------Aggccaggcgc
i nomLeu3.chr25             C 0 C 0
s calJac3.chr21              37506276 179 +  50472720 AGTCTATAATATGATTTCTGTTACAAAGCC-------TGGAAGTTCTACCTCTATTCATTTAGAAAACTTCATGTTCTGAACGTGAAGTATGTGCAATATACTCTTGTTGTGTTT-AAAGAACTATGAATCACA-TTTTTTATTTAAAAAATGATGGtttttttttt---tttttt-ttttAggctgggcgt
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28129895 144 +  39895921 AGACTTTAATA---TTTCTGTCACAAAGCA-------GGGATGTTCTGTCTATATTCATTTAAGTGACTTCATAATCTGAG-----------------GTAttttattattactt--------------tcaaa---ttttattgattta----ttattatttttttaaattttatttttTAAAGTAAGCTC
i canFam3.chr31             I 426 I 401
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185191441 639 - 198365852 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=197569.000000
s hg38.chr21_GL383581v2_alt    102958 244 +    116689 ggt-ggctcatgcctataatcccaacactttgggaggccgaggtgggcagattgcttgaggtggggagttccagaccagcctggccagcatagtgaaaccccgtctctactaaaagtacaaaaattagctgggcatggtggtaaacacctataatctcagctattc-aggaggctgaagcaggagaatcccttgaacccgggaggcagaggttgcagtaagctgagatcgcgctactccactccag
s panTro4.chr21              19607432 244 +  32799110 ggt-ggctcatgcctataatcccaacactttgggaggccgaggtgggcagattgcttgaggtggggagttccagaccagcctggccagcatagtgaaaccccgtctctactaaaagtacaaaaattagctgggcatgatggtaaacgcctataatctcagctattc-gggaggctgaagcaggagaatcccttgaacctgggaggcagaggttgcaatgagctgagatcgcgctactccactccag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515495 244 +  48394510 ggt-ggctcatgcctataatcccaacactttgggaggccgaggtgggcagattgcttgaggtggggagttccagaccagcctggccagcatagtgacaccccgtctctactaaaaatacaaaaattagctgggcatggtggtgaacgcctataatctcagctattc-ggcaggctgaagcaggagaatcccttgaacctgggaggcagaggttgcagtgagctgagatcgcgctactccactccag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20034818 244 +  32716333 ggt-ggctcatgcctataatcccaacactttgggaggccgaggtgggcagattgcttgaggtggggagttccagaccagcctggccagcatagtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggtgaacgcctataatctcagctattt-gggaggctgaagcaggagaatcccttgaacctgggaggcagatgttgcagtgagctgagatcgcgctactccactccag
i nomLeu3.chr25             C 0 I 201
s calJac3.chr21              37506455 245 +  50472720 ggtgggctcatgcctgtaatcccagcagttttgtaggccaaggttggcaaatcgcttgaggtcaggcgttggggaccagtctggccaacagagcaaaaccccgtacctactaaaaatataaaaattagctgggcatggtggagaatgcctgtaatctcagctactcagggaggctgaggcaggaggatcacttgaaccc-ggaggcagagtttgcagtgagctgagatcacgccactgcactccag
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130039 401 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=26210.000000
s hg38.chr21_GL383581v2_alt    103202 43 +    116689 cctgggtaacagagtgaaactccatctgaaaaagaaaaaaaat
s panTro4.chr21              19607676 43 +  32799110 cctgggtaacagagtgaaactccatctgaaaaagaaaaaTAAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515739 41 +  48394510 cctgggtaacagagtgaaactccaactgaaaa--aaaaaaaaT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20035263 42 +  32716333 cctgggtaacagagtgaaactccatctgaaaaa-aaaaaaaaT
i nomLeu3.chr25             I 201 C 0
s calJac3.chr21              37506700 41 +  50472720 cctggatgacagaattaaact--gtctcaaaaaaaataaaTAt
i calJac3.chr21             C 0 I 2278
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130039 401 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=38787.000000
s hg38.chr21_GL383581v2_alt    103245 78 +    116689 tgatttgttttttttGAGTGACAGACAAGTTGGGTCTCTCCTTTTGGGAaacagttttagagatataattcatatgcc
s panTro4.chr21              19607719 78 +  32799110 TGATTTGTTTTTTTTGAGTGACAGACAAGTTGGGTCTCTCCTTTTGGGAaacagttttagagatataattcatatgcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515780 77 +  48394510 TGATTTG-TTTTTTTGAGTGACAGACAAGTTGGGTGTCTCCTTTTGGGAaacagttttagagatacaattcatatgcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20035305 77 +  32716333 TGGTTTG-TTTTTTTGAGTGACAGACAAGTTGGGTCTCTCCTTTTGAGAaacagatttagatatataattcatatgcc
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130039 401 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=121227.000000
s hg38.chr21_GL383581v2_alt    103323 208 +    116689 atgcaatcatgaatttgacatgtaca-ttcaatggctttcagtacattcttgtggttgtgcaactatcactgcaatcaattctagaacattttcatcactcaaacaaaaacccctgtaccctttttttgtcacccc--aaata--------cc-tctatcc-----accttaggcaacaactaatctattttctgtct-tctggatttgcctattctggacatttc
s panTro4.chr21              19607797 208 +  32799110 atgcaatcatgaatttgacatgtaca-ttcaatggctttcagtacattcttgtggttgtgcaactatcactgcaatcaattctagaacattttcatcactcaaacaaaaacccctgtaccctttttttgtcacccc--aaata--------cc-tctatcc-----accttaggcaacaactaatctattttctgtct-tctggatttgcttattctggacatttc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34515857 217 +  48394510 atgcaatcatgaatttgacatgtacagttcaatggctttcagtacattcttgtggttgtgcaactatcactgcaatcaattctagaacattttcatcactcaaacaaaaacccctgtaccctttcgttgtcacccc--aaatacctctatccc-tctatcc-----accttaggcaacaactaatctatttcttgtct-tctggatttgcctattctggacatttc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20035382 207 +  32716333 atgcaatcatgaatttgacctgtacaattcaatggctttcattacattcttgtggttgtgcaaatatcattgagttaaattctagaacgttttcatcactcaaaaacaaacccctgtaacctttctttag-acccc--aaata--------ct-tctatcc-----acctttggaaaaagattcttt-ttttctgtct-tatggatttgcatattctgaacatttc
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28130440 214 +  39895921 ataaaatcttaaa--aaaaatgtacagttgagtgggtttagatacgtccatggggtcatgcaaccatctccacgatcaattctagaacattctcattac-ctaacataaa-ccctgcaccccttaggcatcatcctcaaaata--------ttatctatccccacagccctgggcaactactaatctattctgtgtccatgtagatttgcctgttctggacattcc
i canFam3.chr31             I 401 I 33
e mm10.chr16                 91619089 2276 +  98207768 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=240917.000000
s hg38.chr21_GL383581v2_alt    103531 550 +    116689  
s panTro4.chr21              19608005 555 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34516074 549 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20035589 551 +  32716333  
i nomLeu3.chr25             C 0 I 7
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654  33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=11022.000000
s hg38.chr21_GL383581v2_alt    104081 38 +    116689 agtgcagtggcgtgatctcggctcactgcaacctccgc
s panTro4.chr21              19608560 38 +  32799110 agtgcagtggcgtgatctcggctcactgcaacctccgc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34516623 38 +  48394510 agtgcagtggcgtgatctcggctcactgcaacctccgc
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654 33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I
e nomLeu3.chr25              20036140  7 +  32716333 I

a score=151207.000000
s hg38.chr21_GL383581v2_alt    104119 389 +    116689 ctccagggctcaagcagtcctcctgcaggcttcagcctcccgaggagctgggactacaggcacatgct-ccatgcctggctaatttttgtatttttag---tagagatggggtttcagcatgttggccaggctgg------------------------------tctcaaactcctgacctcaagtggtccacccacctcggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggccCtttctttcttctacttcttattatttttgagacaaggtctcactccgtcacccaggctggagtgcagtggtgtaatcccagctcaatgcaacctccaccttccaggttcaagtggttctcctgcttcagcttccagagtagctgggattacgggcaagggccaccatgcccgg
s panTro4.chr21              19608598 389 +  32799110 ctccagggctcaagcagtcctcctgcaggcttcagcctcccgaggagctgggactacaggcacatgct-ccatgcctggctaatttttgtatttttag---tagagatggggtttcagcatgttggccaggctgg------------------------------tctcaaactcctgacttcaagtggtccacccacctcggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggccCtttctttcttctacttcttattatttttgagacaaggtctcactccgtcacccaggctggagtgcagtggtgtaatcccagctcaatgcaacctctgccttccaggttcaagtggttctcctgcttcagcttccagagtagctgggattacgggcaagggccaccatgcccgg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34516661 385 +  48394510 ctccagggctcaagcagtcctcct----gtttcagcctcccgaggagctgggactacaggcacacgct-ccatgcctggctaatttttctatttttag---tagagatggggtttcagcatgttggccaggctgg------------------------------tctcaaagtcctgacctcaagtgatccatccacctcggcctcccaaagtgttgggattacatgcatgagccaccgcgcccggcccttcctttcttctacttcttattatttttgagacaaggtctcactccgtcacccaggctggagtgcagtggtgtgatcccagctcaatgcaacctccgccttccaggttcaagtggttctcctgcttcagcttccagagtagctgggattacaggcaagggccaccatgcctgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20036147 400 +  32716333 ctcctgacctcaagtgatccacct----acctcgacctcctaaagtgctgagattacaggcgtgagccaccgtgcttggccCCAGTTATTATTATTAGttttagagacagggtctcactttgttgcccaggctggagtgtagtggcatgatctcagctcaattgcactcaacctcctaggctc--gtgatcctcccacctcagcctcccaagtagctgggaccacatttgtgtgccaccatacctggctaatttttta----------------ttttgagacgaagttcccctctgtcgcccaggccggagtgcagtggcgtaatcttggctcactgcaacctcccgctccagggctcaagcagtcctcctgcttcagcctcccgaggagctgggactacaggcacacgct-ccatgcctgg
i nomLeu3.chr25             I 7 M 623
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654  33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=113921.000000
s hg38.chr21_GL383581v2_alt    104508 421 +    116689 ctaatttttgtatttttagtagagatggcatttcaccatgttggcctggcaggtctcgaactcctgacctcaagtgacccccctgcctcatcctcccaaagtgctggaatataggcctgagccaccgcacatagccacacctggctaatttttatattttattctttgtagaaatggtttcttgctatgttgcctaagctggtctggaactcctggactcaagcaatcttccctcctcggcctcccaaagtgctgggattacaggtgtatggtactgcacccagcctggacatttcatataaatagaactgtataatatgtggtcttttttttttgagacagagtctcactctgtcaccaggctggagtgcagtggcacgatcttggctcactgccacctccgcctcctaggttcaagcaa
s panTro4.chr21              19608987 421 +  32799110 ttaatttttgtatttttagtagagatggcatttcaccatgttggcctggcaggtctcgaactcctgacctcaagtgacccccctgcctcgtcctcccaaagtgctggaatataggcctgagccaccacacatagccacacctggctaatttttatattttattctttgtagaaatggtttcttgctatgttgcctaagctggtctggaactcctggactcaagcaatcttccctcctcggcctcccaaagtgctgggattacaggtgtatggtactgcacccagcctggacatttcatataaatagaattgtataatatgtggtcttttttttttgagacagagtctcactctgtcgccaggctggagtgcagtggcacgatcttggctcactgccacctccgcctcctaggttcaagcaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34517046 421 +  48394510 ctaatttttgtatttttagttgagatggcatttcaccatgttggcctggctggtctcgaactcctgacctcaagtgatccccctgcctcgtcctcccaaagtgctggaatataggcctgagccaccgcacatggccacacctggctaatttttatattttattttttgtagaaatggtttcctgctatgttgcctaagctggtctggaactcctggactcaagcagtcttccctccttggcctcccaaagtgctgggattacaggtggatggtactgcacccagcctggacatttcatataaatagatttgtataatatgtggtctttattttttgagacggagtctcactgtgttgccaggctggagtgcagtggcacgatcttggctcactgccatctccgcctcctaggttcaaacaa
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654  33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I
e nomLeu3.chr25              20036547 623 +  32716333 M

a score=24147.000000
s hg38.chr21_GL383581v2_alt    104929 70 +    116689 ttctcctgcctca-gcctcctgagtagttgggactacaggcgcgcaccaccacgcccagctt----attt------tttat
s panTro4.chr21              19609408 70 +  32799110 ttctcctgcctca-gcctcctgagtagttgggactacaggcgcgcaccaccacgcccagctt----attt------tttat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34517467 76 +  48394510 ttctcctgcctca-gcctcctgagtagttgggactacaggcgcgcaccaccacgcccagttt----atttattttatttat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20037170 75 +  32716333 tcttccctcctcaggcttcccaacgtgctgggattacagatgtatggtactgcgcccagcctggacattt------catat
i nomLeu3.chr25             M 623 I 29
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654 33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=6360.000000
s hg38.chr21_GL383581v2_alt    104999 23 +    116689 ttttattttttcttcttttttct
s panTro4.chr21              19609478 23 +  32799110 ttttattttttcttcttttttct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34517543 23 +  48394510 ttttattttttcttcttttttct
i ponAbe2.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654 33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I
e nomLeu3.chr25              20037245 29 +  32716333 I

a score=262602.000000
s hg38.chr21_GL383581v2_alt    105022 622 +    116689  
s panTro4.chr21              19609501 654 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34517566 620 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20037274 652 +  32716333  
i nomLeu3.chr25             I 29 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654  33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e papAnu2.chr3              167414625 218 - 180432695 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=3018.000000
s hg38.chr21_GL383581v2_alt    105644 5 +    116689 tgatg
s panTro4.chr21              19610155 5 +  32799110 tgatg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518186 5 +  48394510 ttatg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20037926 5 +  32716333 tgatg
i nomLeu3.chr25             C 0 C 0
s papAnu2.chr3              167414843 5 - 180432695 tgaag
i papAnu2.chr3              I 218 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654 33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I
e macFas5.chr3              179034554 223 - 192294377 I

a score=115209.000000
s hg38.chr21_GL383581v2_alt    105649 139 +    116689 ggggtctcactatgttgtccaggctggtcttgaactcctgggctcaactgatcctcctacctgggcccccc---gtgctggaattacaggtgtgagccaccatgcctggccgcatgtggtcatttatgactgaattcttttt
s panTro4.chr21              19610160 137 +  32799110 ggggtgtcactatgttgtccaggctggtcttgaactcctgggctcaactgatcctcctacctgggcccccc---gtgctggaattacaggtgtgagccaccatgcctggccgcatgtggtcatttatgactgaatt--tttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518191 138 +  48394510 ggggtctcactatgttgtccaggctggtcttgaactcctgggctcaactgatcctcctaccttggcccccc--agtgctgggattacaggtgtgagccaccatgcctggctgcatgtggttatttatgactgaatt--cttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20037931 138 +  32716333 ggagtctcactatgttgtccaagctggtcttgaactcctgcgctcaactgatcctcctacctgggcccccc--agtgctgggattacaggtgtgagccaccatgcctggccGCatgtggtcatttatgactgaatt--cttt
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179034777 116 - 192294377 ggggtttcactatgttggccaggatggtcttgatctcatgacct--ggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcataagccaccaaggccagcT----------------------AGT--Cttt
i macFas5.chr3              I 223 C 0
s papAnu2.chr3              167414848 115 - 180432695 tggggttcactatgttggccaggatgatcttgatctcatgacct--ggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgtaagccaccaaggccagct----------------------agt--c-tt
i papAnu2.chr3              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654  33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e calJac3.chr21              37506741 2278 +  50472720 I
e chlSab2.chr2               31687796 649 -  90373283 I

a score=367346.000000
s hg38.chr21_GL383581v2_alt    105788 287 +    116689 ttt-ttttttttttgagacggagtctcgctctattggcaggctggagtgcaggg-----gcgtt-----agctcactgcaacctccgcctcccggattcaagcaattctcctgcctcaacctccctagtagctaggactacaggtgcacaccaccac-------gcccagctaa-tttctgtatttttattagagac-agggttccaccatgttggccaggatggtcttgatctcttgacctcg--tgatccgcctgcctcggcctcccaaagtgctgggattacagagctgagccactgcacctggcc
s panTro4.chr21              19610297 287 +  32799110 ttt-ttttttttttgagacggagtctcgctctattggcaggctggagtgcaggg-----gcgtt-----agctcactgcaacctccgcctcccggattcaagcaattctcctgcctcaatctccctagtagctgggactacaggtgcacaccaccac-------gcccagctaa-tttctgtatttttattagagac-agggtttcaccatgttggccaggatggtcttgatctcttgacctcg--tgatccacctgcctcggcctcccaaagtgctgggattacagagctgagccactgcacctggcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518329 271 +  48394510 t----------------------tcttgctctattggcaggctggagtgcggtg-----gcattatctcagctcactgcaacctctgcctcccggattcaagcaattctcctgcctcaacctccctagtagctgggactacaggtgcacgccaccac-------gcccagctaa-tttttgtatttttattagagac-agggtttcaccgtgttggccaggatggtcttgatctcttgacctcg--tgatccgcctaccttggcctcccaaagtgctgggattacaaggctgagccactgcacctggcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20038069 290 +  32716333 t---ttttttttttgagacagagtctcgctctattggcaggctggagtgcagtg-----gcgtgatctcagctcactgcaacctccgcctcctggattcaagcaattctcctgcctcaacctccctagtagctgggactacaggtgcatgccaccac-------gcccatctaa-tttttgtatttttattagagac-ggggtttcaccatgttggccaggatggtcttgatctctagacctcg--tgatccacctgccttgggctcacaaagtgctgagattacagggctgagccactgcacctggcc
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179034893 284 - 192294377 t---ttttttttttgagaaaatgtctcact-------caggctggagtacagtt-----gtgcgatcacagctctctgaagcttcgacctcctgagttcaaggaatcctcctacctcagccttccaagtagctgggactacaggtgtgtgccaccat-------gcccaatt---tttctattttatttgtagtgatgggggtctcactatgttgtccaggctggtcttaaactccagggttcaactgatcctcctacctgggccctccaaagtgctgggactacaggtgtgagccaccatgcctggcc
i macFas5.chr3              C 0 I 18
s papAnu2.chr3              167414963 284 - 180432695 t---ttttttttttgagaaaatgtctcact-------caggctggagtacagtt-----gtgcgatcacagctcactgaagcttcgacctcctgagttcaaggaatcctcctacctcagccttccaagtagctgggactacaggtgtgtgccaccat-------gcccaatt---tttctattttatttgtagtgatgggggtctcactatgttgtctaggctggtcttgaactccagggttcaactgatcctcctacctgggccctccaaagtgctgggattacaggtgtgagccaccatgcctggcc
i papAnu2.chr3              C 0 I 18
s calJac3.chr21              37509019 304 +  50472720 -ttctgttttctttgagacagagtcttgctctatcatcaggctggagtgcagtgcagtagtgcgatcccggctcactgcaacttctgttttccggtttcaagcaatacttctgcctcagcctcctgagtagctgggactgcaggcatgcaccaccacgcaccatgcccagctaattttttgtacttttagtagagat-ggggtttcaccatgttggccaggatggtctcgatctct-gacctcg--tgatccgcctgcctcagcctcccaaagtgctgggattataggcatgagccattgcgcccggcc
i calJac3.chr21             I 2278 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28130654  33 +  39895921 I
e rheMac3.chr3              185191441 639 - 198365852 I
e chlSab2.chr2               31687796 649 -  90373283 I

a score=546894.000000
s hg38.chr21_GL383581v2_alt    106075 189 +    116689 ctgaattctttcacttagcataatacttcaaggttcacccacactgtagcatgtgtta-gtatttcattcc-tttttataattgaatagtattcaa-tgtatggatatat------------ttatccata---tatttatcagttcatttgctgatgaacatttgcattgtctccacttATGAATCAGTTTTTAACTGTTAATTAA
s panTro4.chr21              19610584 189 +  32799110 ctgaattctttcacttagcataatacttcaaggttcacccacactgtagcatgtgtta-gtatttcattcc-tttttataattgaatagtattcaa-tgtatggatatat------------ttatccata---tatttatcagttcatttgctgatgaacatttgcattatctccacttATGAATCAGTTTTTAACTGTTAATTAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518600 190 +  48394510 ctgaattctttcacttaggataatgcttcaaggctcacccacactgtagcatgtgtta-gtatttcattccttttttataattgaatagtattcaa-tgtatggatatat------------ttatccata---tatttatcagttcatttgctgatgaacatttgcattgtctccacttatgaatcaatttttaactgttaattaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20038359 187 +  32716333 ctgaat--tttcacttagcataatgcttcaaggttcacccacactgtagcatgtgtta-gtatttcattcc-tttttataattgaatagtattcaa-tgtatggatatat------------ttatccata---tatttatcagttcattttctgatgaacatttccattgtctccacttatgaatcagtttttaactgttaattgA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185192080 201 - 198365852 ctgaattctttcacttagcataatgtttcaaggttcacccacactgtagcatgtgtta-gtatttcattcc-tttttataattgaatagcattcaa-tgtatggatatatctatggatatagctatccata---catttatcagttcatttgctgatgaacatttgcactgactccacttATAAATCGGTTTTTAACTGTTAATTAA
i rheMac3.chr3              I 639 C 0
s macFas5.chr3              179035195 201 - 192294377 ctgaattctttcacttagcataatgtttcaaggttcacccacactgtagcatgtgtta-gtatttcattcc-tttttataattgaatagcattcaa-tgtatggatatatctatggatatagctatccata---catttatcagttcatttgctgatgaacatttgcactgactccacttATAAATCGGTTTTTAACTGTTAATTAA
i macFas5.chr3              I 18 C 0
s papAnu2.chr3              167415265 201 - 180432695 CTgaattctttcacttagcataatgtttcaagGTTCACCCACACTGTAGCATGTGtta-gtatttcattcc-tttttataattgAATAGCATTCAA-TGTATGGATATATCTATGGATATAGCTATCCATA---CATTTATCAGTTCATTTGCTGATGAACATTTGCACTGACTCCACTTATAAATCGGTTTTTAACTGttaattaa
i papAnu2.chr3              I 18 C 0
s chlSab2.chr2               31688445 201 -  90373283 ctgaattctttcacttagcataatgtttcaaggttcacccacactgtagcatgtgtta-gtatttcattcc-tttttataattgaatagtattcaa-tgtatggatatatctatggatatagctatccata---catttatcagttcatttgctgatgaacatttgcactgactccacttATAAATTGGTTTTTAACTGTTAATTAA
i chlSab2.chr2              I 649 C 0
s calJac3.chr21              37509323 129 +  50472720 ------------------------------------------------------------tatttcattcc-tttttgtaatcgaatagtattccattatatggatatac-----------------cacattttatgtaccagttcattttgtgatgaacatttgcattgtctccacttatgagttagtttttaactgttaattaa
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28130687 181 +  39895921 ctggattctttcattcagc---atgtttcaaggtttatccatgttatagaatgtatcaggcgcttcatttc-ctttaat-----ggtaatactccgctgtatgga-----------------ttgaccacattttctttattgattcattagcagatggacatttggattgttcctacttACGAGTTAATTTAAAAATGTTAATTAG
i canFam3.chr31             I 33 I 131
e mm10.chr16                 91619089 2276 +  98207768 I

a score=416930.000000
s hg38.chr21_GL383581v2_alt    106264 126 +    116689 CATTTGGCTCCAGATAAAGGAAAATGATCTAACACTGTGGTAAATGTAAAATTTACATGGCTTGTGAAAGAATGGCTG----TCA-GAGATGGTCTCTTTTAAA---CAGTGGAG---------GAGGC--AAATGTATGCATTA
s panTro4.chr21              19610773 127 +  32799110 CATTTGGCTCCAGATAAAGGAAAATGATCTAACACTGTGGTAAATGTAAAATTTACATGGCTTGTGAAAGAATGGCTG----TCAAGAGATGGTCTCTTTTAAA---CAGTGGAG---------GAGGC--AAATGTATGCATTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518790 126 +  48394510 catttgGCTCCAGATAAAGGAAAACGATCTAACACTGTGGTAAATGTAAAATTTACATGGCTTGTGAAAGAACGGCTG----TCA-GAGATGGTCTCTTTTAAA---CAGTGGAG---------GAGGC--AAATGTATGCATTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20038546 131 +  32716333 CATTTGGCTCCAGATAAAAGAAAATGATCTAACACTGTGGTAAATGTAAAATTTACATGGCTTGT----GAATGGCTG----TCA-GAGATGGTCTCTTTTAAA---CAGTGGAGGAGGCAAATGAGGC--AAATGTATGCATTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185192281 126 - 198365852 CATTTGGCTCCAGATAAAGGAAAATGATCTAACATTGTGGTAAATGTCAAATTTATATGGCTTGTGAAAGAACGACTG----TCA-GAGATGGTGTCTTTTAAA---CAGTGGAG---------GAGGC--AAGTGTATGCATTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179035396 126 - 192294377 CATTTGGCTCCAGATAAAGGAAAATGATCTAACATTGTGGTAAATGTCAAATTTATATGGCTTGTGAAAGAACGACTG----TCA-GAGATGGTGTCTTTTAAA---CAGTGGAG---------GAGGC--AAGTGTATGCATTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167415466 126 - 180432695 catttggctccagATAAAGGAAAATGATCTAACATTGTGGTAAATGTCAAATTTATATGGCTTGTGAAAGAACGACTG----TCA-GAGATGGTGTCTTTTAAA---CAGTGGAG---------GAGGC--AAGTGTATGCATTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31688646 126 -  90373283 CATTTGGCTTCAGATAAAGGAAAATGATCTAACATTGTGGTAAATGTCAAATTTATATGGCTTGTGAAAGAACGACTG----TCA-GAGATGGTGTCTTTTAAA---CAGTGGAG---------GAGGC--AAGTGTATGCATTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37509452 130 +  50472720 catttgGCTCCAGATAAAGGGAAATGGTCTAACATTTTAGTAAATGTAAAATTTACATGGCTTGTGAAAGAATGGCTGGCTATCA-GAGATGATCTCTTTTAAG---CAGTGGAG---------GAGGC--AAATATATGCATTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28130999 119 +  39895921 CAATTGGCTCCAGATAAAGGAAAATAGCCACATGTTGTGGTAAATAAAA----------GGCTGAGAAAGAATGGCTA----TCA-GAGAC--TCTCCCCTAAATAGTAGTGGAG---------GAGGCAAAAATTTATGTATTA
i canFam3.chr31             I 131 I 2682
e mm10.chr16                 91619089 2276 +  98207768 I

a score=180615.000000
s hg38.chr21_GL383581v2_alt    106390 61 +    116689 GAATTGCTGAAAAACACTTTGGGAGGTAAAGACAATTTTGGTTTTAAAAAGGCCAAAGGAG
s panTro4.chr21              19610900 61 +  32799110 GAATTGCTGAAAAACACTTTGGGAGGTAAAGACAATTTTGGTTTTAAAAAGGCCAAAGGAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518916 61 +  48394510 GAATTGCTGAAAAACACTTTGGGAGATAAAGACAATTTTGGTTTTAAAAAAGCCAAAGGAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20038677 61 +  32716333 GAATTGCTGAAAAACACTTTGGGAGATAAAGACAATTTTGGTTTTAAAAAAGCCAAAAGAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185192407 61 - 198365852 GAATTGCTGAAAAACACTTTGGGAGATAAAGACAATTTTGGTTTTAAAAAAGCCAAAAAAG
i rheMac3.chr3              C 0 I 1431
s macFas5.chr3              179035522 61 - 192294377 GAATTGCTGAAAAACACTTTGGGAGATAAAGACAATTTTGGTTTTAAAAAAGCCAAAAAAG
i macFas5.chr3              C 0 I 1458
s papAnu2.chr3              167415592 61 - 180432695 GAATTGCTGAAAAACACTTTGGGAGATAAAGacaattttggttttaaaaaagccaaaaaag
i papAnu2.chr3              C 0 I 1159
s chlSab2.chr2               31688772 61 -  90373283 GAATTGCTGTACACCACTTTGGGAGATAAAGACAATTTTGGTTTTAAAAAAGCCAAAAAAG
i chlSab2.chr2              C 0 I 1149
s calJac3.chr21              37509582 59 +  50472720 GAGTTGCTGAAAAATACTTTGGGAGAT-AATACAATTTTGGTTTTAAAAAAGCCAAAAGA-
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28131118 2682 +  39895921 I

a score=558451.000000
s hg38.chr21_GL383581v2_alt    106451 196 +    116689 ggccgggtgcggtggctcacgcctgtaatcccagcactatgag-ggccaaagcaggcagatcaaatgaagtcaggagttggaaaccagcctggccagcatggtgaaaccccgtctctaccacaaatacaaaatg-agccgggtgtcgtagtgcatgcctgtaatcctagctactcaggaggctgaggcaggagaatca
s panTro4.chr21              19610961 196 +  32799110 ggccgggtgcggtggctcacgcctgtaatcccagcactatgag-ggccaaagcaggcagatcaaacgaggtcaggagttggaaaccagcctggccagcatggtgaaaccccgtctctaccacaaatacaaaatg-agccgggtgtcgtagtgcatgcctgtaatcctagctactcaggaggctgaggcaggagaatca
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34518977 196 +  48394510 ggccaggtacggtggctcacgcctgtaatcccagcactatggg-ggccaaagcaggcagatcaaatgaggccaggagttggagaccagcctggccagcatggtgaaaccccatctctactaaaaatacaaaatg-agccgggtgtggtagtgcatgcctgtaatcctagctactcaggaggctgaggcaggagaatca
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20038738 196 +  32716333 ggccgggcgcggtggctcacacctgtaatcccagcaccacggg-ggtcaaagcaggcaaatcaaatgaggccaggagttggagatcagcctggccagcatggtgaaaccccgtctctactaaaaatacaaaatg-agctgggtgtgacagtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185193899 196 - 198365852 ggccgggtgtggtggctcacgcttgtaatcccagcactttggg-ggccaaagcaggcagatcaaatgaggccaggagttgcagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaatg-agccgggtgtggcagggttcgcccgcaatctcagctactcaggaagctgaggcaggagaatca
i rheMac3.chr3              I 1431 C 0
s macFas5.chr3              179037041 196 - 192294377 ggccgggtgtggtggctcacgcttgtaatcccagcactttggg-ggccaaagcaggcagatcaaatgaggccaggagttgcagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaatg-agccgggtgtggcagtgtacgcctgtaatctcagctactcaggaagctgaggcaggagaatca
i macFas5.chr3              I 1458 C 0
s papAnu2.chr3              167416812 196 - 180432695 ggctgggtgtggtggctcacgcttgtaatcccagcactttggg-ggccaaagcaggcagatcaaatgaggccaggagttgcagactagcctggccaacatggtgaaacgccgtctctactaaaaatacaaaatg-agccgggtgtggcagtgtacgcctgtaatctcagctactcaggaagctgaggcaggagaatca
i papAnu2.chr3              I 1159 C 0
s chlSab2.chr2               31689982 196 -  90373283 ggctgggtgtggtggctcacgcttgtaatcccagcactttggg-ggccaaagcagacagatcaaatgaggccaggagttgcagactagcctggccaacatggtgaaaccccatctctactaaaaatacaaaatg-agccaggtgtggcagtgcacgcctgtaatcccagctactcaggaagctgaggcaggagaatca
i chlSab2.chr2              I 1149 C 0
s calJac3.chr21              37509641 198 +  50472720 ggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggcagaggcaggcggatcacttgaggtcaggagttggagaccagcccggccaccatggcaaaaccccatttctactaaaaatacaaaaaattgccaggcatggtggctcatgcctataatcccagcactttggaaggctgaggcaggcagatca
i calJac3.chr21             C 0 I 347
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28131118 2682 +  39895921 I

a score=223832.000000
s hg38.chr21_GL383581v2_alt    106647 80 +    116689 cttgaacccgggaggcagaggttgcagtgagctgagatcttgccactgcaccccagcctgggtgac-tgagtgaga--ctgtc----------------
s panTro4.chr21              19611157 80 +  32799110 cttgaacccgggaggcagaggttgcagtgagccaagatcttgccactgcaccccagcctgggtgac-tgagtgaga--ctgtc----------------
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34519173 82 +  48394510 cttgaacccgggaggcagaggttgcagtgagccgagatcttgccactgcaccccagcctgggtgac-tgagtgagactctgtc----------------
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20038934 82 +  32716333 cttgaacccaggaggcagaggttgcagtgagctgagatcgtgccaccgcaccccagcctgggtgac-tgagcgagactctgtc----------------
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185194095 80 - 198365852 cttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcaccccagcctgggcgac-tgagcgaga--ctgtc----------------
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179037237 80 - 192294377 cttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcaccccagcctgggcgac-tgagcgaga--ctgtc----------------
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167417008 80 - 180432695 cttgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcaccccagcctgggcgac-tgagcgaga--ctgtC----------------
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31690178 80 -  90373283 cttgaacccaggaggcagaggttgcagtgagccaagattgtgccactgcaccccagcctgggcgac-tgagcgaga--ctgtc----------------
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37510186 99 +  50472720 cttgaacctgggagacggaggttgcagtgagcagagattgtgtcattgcgctccagcctgggcaacaaaagtaaaactccattaaaaaaaaaaaaTTAG
i calJac3.chr21             I 347 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28131118 2682 +  39895921 I

a score=1304486.000000
s hg38.chr21_GL383581v2_alt    106727 387 +    116689 tcaTCAAAACAACTATATGAATGATATTTGCCTACTTTAATTGACAAGGGAATAGAGAGACACAGTGGATGAGAAATGTGCCTAAAGTTTTATGCTTGAATCTAAAAGCCACCAACTCTCCCCCTAATC---------CTCTAGTGACTTGCAGAGAAGTATGGATCTTTATAAACCACAGGATAATTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATCCAGAAATCTTAACACACCAGATTATGATCACGATGGTCGGAAAAGTCTCAAAT----------CAGCTATACAATATAAGGAAGAGATACTGCCTTGTTAGACTTG
s panTro4.chr21              19611237 387 +  32799110 tcaTCAAAACAACTATATGAATGATATTTGCCTACTTTAATTGACAAGGGAATAGAGAGACACAGTGGATGAGAAATGTGCCTGAAGTTTTATGCTTGAATCTAAAAGCCACCAACTCTCCCCCTAATC---------CTCTAGTGACTTGCAGAGAAGTATGGATCTTTATAAACCACAGGATAATTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATCCAGAAATCTTAACACACCAGATTATGATCACGATGGTCGGAAAAGTCTCAAAT----------CAGCTATACAATATAAGGAAGATATACTGCCTTGTTAGACTTG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34519255 387 +  48394510 tcaTCAAAACAACTATATGAATGGTATTTGCCTACTTTAATTGACAAGGGAATAGAGAGACACAGTGGATGAGAAACGTGCCTAAAGTTTTGTGCTTGAATCTAAAAGCCACCAACTCTCCCCCTAATC---------CTCTAGTGACTTGCAGAGAAGTATGGATCTTTATAAACCACAGGATAACTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAAGTGTCAATAATTACAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATCCAGAAATCTTCACACACCAGATTATGATCACGATGGTCGGAAAAGTCTCAAAT----------CAGCTATACAATATAAGGAAGAAATACTGCCTTGTTAGACTTG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20039016 387 +  32716333 tcaTCAAAACAACTATATGAATGACATTTGCCTACTTTAATTGATGAGGGAATAGAAAGACAGAGTGGATGAGAAACGTGCCTAAAATTTAATGCTTGAATCTAAAAGCCACCAACCCTCCCCCTAATC---------CTCTAGTGACTTGCAGAGAAGTATGGATCTTTATAAACCACAGGATAACTAAACTTTACTGAAGCTAAAATCTGTGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ATTATCCTTCAGAAATGGGAGTTATCCAGAAATCTTAACACACCAGATTATGATCACGATGGTCAGAAAAGTCTCAAAT----------CAGCTATGCAATATAAGGAAGAGATACTGCCTTGTTAGACTTG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185194175 381 - 198365852 tcaTCAAAACAACTGTATGAATGACATTTGCCTACTTTAATCGACGAGGGAATAGAGAG----AGTGGATGAGAAACATGCCT--AGTTTTATGCTTGAATCTAGAAGCCACCAACTCTCCCTCTAATC---------CTCTAGTGACTTACAGAGAAGTATGGATCTTTATAAACCACAGGATAACTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATACAGAAATCTTAACACACCAGATTATGATCACGATGATCAGAAAAGTCTCAAAT----------CAGATATAAAATATAAGGAAGAGATACTGCCTCGTTAGACTTG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179037317 381 - 192294377 tcaTCAAAACAACTGTATGAATGACATTTGCCTACTTTAATCGACGAGGGAATAGAGAG----AGTGGATGAGAAACATGCCT--AGTTTTATGCTTGAATCTAGAAGCCACCAACTCTCCCTCTAATC---------CTCTAGTGACTTACAGAGAAGTATGGATCTTTATAAACCACAGGATAACTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATACAGAAATCTTAACACACCAGATTATGATCACGATGATCAGAAAAGTCTCAAAT----------CAGATATAAAATATAAGGAAGAGATACTGCCTCGTTAGACTTG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167417088 381 - 180432695 TCATCAAAACAACTGTATGAATGACATTTGCCTACTTTAATCGACGAGGGAATAGAGAG----AGTGGATGAGAAACATGCCT--AGTTTTATGCTTGAATCTAGAAGCCACCAACTCTCCCTCTAATC---------CTCTAGTGACTTACAGAGAAGTATGGATCTTTATAAACCACAGGATAACTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATACAGAAATCTTAACACACCAGATTATGATCACGATGATCAGAAAAGTCTCAAAT----------CAGATATACAATATAAGGAAGAGATACTGCCTCGTTAGACTTG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31690258 381 -  90373283 tcaTCAAAACAACTGTATGAATGACATTTGCCTACTTTAATCGACGAGGGAATAGAGAG----AGTGGATGAGAAACATGCCT--AGTTTTATGCTTGAATCTAGAAGCCACCAACTCTCCCTCTAATC---------CTCTAGTGACTTACAGAGAAGTATGGATCTTTATAAACCACAAGATAACTAAACTTTACTGAAGCTAAAATCTGGGGATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATGATACTTCAAAGCATAAAGGAT----ACTATCCTTCAGAAATGGGAGCTATACAGAAATCTTAACACACCAGATTATCATCACGATGATCAGAAAAGTCTCAAAT----------CAGATATACAATATAAGGAAGAGATACTGCCTCGTTAGACTTG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37510285 399 +  50472720 TTATTAAAACAACTGTATGAATGGCATTTGTCTACTTT-ATCAACGAGGGACTAGAGAGAGAGAGTCGATGAAAAACGTGCCTAAAGTTTTATGCTTGAATCTAGAAGCCACCAATTCTCCCTCTAATCCTTTAGTGACTCCAGTGACTTACAGAGAAATATGGATCTTTATAAACCACAGGATAACTAAACTTTACTGAAGGTAAAATCTGGGTATTACAGAAACTGTCAATAATTAGAGGAACGTTTAATAATACTTTAAAGCATAAAGGATACTAACTATCCTTCAGAAATGGGAGTGATTCAGAAATCTTAACACACCAGATTATGATCATCATGCTCAGAAAAATCTCAAAT----------CAGATATACAATATAAGAAAGAGATAATGCCTTGTTAGACTTG
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28133800 367 +  39895921 ttatcaagacaaccgta--acaggtatttgcctaccttagtagatggggagacagagac--aaagagaatgagtaacatgccct-agTCCTATGTTTGAATCTAGATGCCACCAAAACTCTCTTTAACC---------TTCTAGTAGTTACCAGAG---TATGAATGTTGATAATCTGTAGAATCACTG--------TGAAGCTAAAATCTGGGTAGTAAAGAAACTGTCAATAATCAGAGGGATGTTTAATAATATTTCAAAGCAGAAAGTAC----ACTATCCCTCAGAGCTGAGAGCTACACACAAATTTTATGACACTAAATTATGCTT--------------AGTCTCAATTCAAACCAGTACAGATACATAATACAGGGCAAAGATATTAACTTAGTAGTCTTG
i canFam3.chr31             I 2682 I 191
e mm10.chr16                 91619089 2276 +  98207768 I

a score=570613.000000
s hg38.chr21_GL383581v2_alt    107114 186 +    116689 GGGAAGAGAT-AGTCACTTGACACTGATCAGAAGGAGGCTGGGCAACTTTTACACACCGGAATCTATAACCAAGATTATAAACGGAACCCAGGTGATACACTTGGGTTTGTCCTCATGTTTCTTTTCCTCATTTTAACTCAGATACATCCAGCAGTCATGGCTTCAAAAGCATATGATCAAAGATCA
s panTro4.chr21              19611624 186 +  32799110 GGGAAGAGAT-AGTCACttgacactgatcagaaggaagctgggcaacttttacacactggaatctataaccaagattataaacggaacccaggtgatacacttgggtttgtcctcatgtttcttttcctcattttaactcagatacatccagcagtcatggcttcaaaagcatatgatcaAAGATCA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34519642 186 +  48394510 GGGAAGAGAT-AGTCACTTGACACTGATCAGAAGGAGGCTGGGCAACTTTTACACACTGGAATCTATAACCAAGATTATAAACGGAACCCAGGTGATACACTTGGGCTTGTCCTCATGTTTCTTTTCCTCATTTTAACTCAGATACATCCAGCAGTCATGGCTTCAAAAGCATATGATCAAAGATCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20039403 185 +  32716333 GGGAAGAGAT-AGTCACttgacaccgatcaggaggaggct-ggcaacttttacacactggaatctataaccaagattataaatggaacccaggtgatacacttgggcttgtcctcatgtttcttttcctcattttaactcagatacatccagcagtcatggcttcaaaagcatatgatcaAAGATCA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185194556 187 - 198365852 GGGAAGAGGTAAGTCACTTGACACTGATCAGAAGGAGGCTGGGCAACTTTTACACAGTGGAATTTATAACCAAGATTATAAACGGAACCCAGGTGATACACTTAGGCTTGTCCTCATGTTTCTTTTCCCCATTTTAACTCAGATACATCCAGCAGTCATGGCTTCAAAAGCATATGATCAAAGATTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179037698 187 - 192294377 GggaagaggtaagtcacttgacactgatcagaaggaggctgggcaacttttacacagtggaatttataaccaagattataaacggaacccaggtgatacacttaggcttgtcctcatgtttcttttccccattttaactcagatacatccagcagtcatggcttcaaaagcatatgatcaAAGATTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167417469 187 - 180432695 GGGAAGAGGTAAGTCACTTGACGCTGATCAGAAGGAGGCTGGGCAACTTTTACACAGTGGAATTTATAACCAAGATTATAAACGGAACCCAGGTGATACACTTAGGCTTGTCCTCAtgtttcttttccccattttaacTCAGATACATCCAGCAGTCATGGCTTCAAAAGCATATGATCAAAGATTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31690639 187 -  90373283 GggaagaggtaagtcacttgacactgatcagaaggaggctgggcaacttttacacagtggaatttataaccaagattataaacggaacccaggtgatacacttaggcttgtcctcatgtttcttttccccattttaactcagatacatccggcagtcatggcttcaaaagcatatgatcaAAGATTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37510684 186 +  50472720 GAGAAGAGAT-AGTCACTTGAAATTTATCAGAAGGAGGTTGGGCAACTTTTACACATTGGAATATATAACTAAGATTATAAACAGAGCCTACGTGATATACTTGGGCTTCTCTTCAAGTTTATTTTCCCCATTTTAACTCAGATACATCCACCAGCCATGGCTTCAAAAGCATGTGATCAAAGATTA
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I

a score=30547.000000
s hg38.chr21_GL383581v2_alt    107300 13 +    116689 GAAAACCCATAAC
s panTro4.chr21              19611810 13 +  32799110 GAAAACACATAAC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34519828 13 +  48394510 GAAAACACATAAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20039588 13 +  32716333 GAAAACACataac
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185194743 13 - 198365852 GAAAACATATAAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179037885 13 - 192294377 GAAAACATATAAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167417656 13 - 180432695 GAAAACATAtaac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31690826 13 -  90373283 GAAAACATATAAC
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I
e calJac3.chr21              37510870  0 +  50472720 C

a score=267.000000
s hg38.chr21_GL383581v2_alt    107313 8 +    116689 ttatttat--
s panTro4.chr21              19611823 5 +  32799110 TTATT-----
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34519841 5 +  48394510 TTATT-----
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20039601 5 +  32716333 ttatt-----
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185194756 7 - 198365852 TTACT---At
i rheMac3.chr3              C 0 C 0
s chlSab2.chr2               31690839 7 -  90373283 TTATT---At
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I
e calJac3.chr21              37510870 0 +  50472720 C
e papAnu2.chr3              167417669 0 - 180432695 C
e macFas5.chr3              179037898 0 - 192294377 C

a score=94043.000000
s hg38.chr21_GL383581v2_alt    107321 191 +    116689 ttatttatttatttatttatttatttattgagatggagtctcgctctgtcgcccgggctggagtgcggtggcatgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggaccacaggcgcccgccaccacacccaggataatttttttttttt
s panTro4.chr21              19611828 186 +  32799110 --ATtt---tatttatttatttatttattgagatggagtctcgctctgtcgcccgggctggagtgcggtggcacgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtctcccaagtagctgggaccacaggcgcccgccaccacacccaggataatttttttttttt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34519846 178 +  48394510 --Attt-----------tatttatttattgagatggagtcttgctctgtcgcctgggctggagtgcggtggcacgatctcggctcactgcaagctctgcctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggaccacaggcgcccgccaccacacccaggataatttttttttttt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20039606 182 +  32716333 --attt-------tatttatttatttattgagatggagtctcgctctgtcacccgggctggagtgcagtggcgtgatcttggctcactgcaagctctgcctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgccaccacacccaggataattttttttttgt
i nomLeu3.chr25             C 0 I 285
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I
e rheMac3.chr3              185194763   0 - 198365852 C
e calJac3.chr21              37510870   0 +  50472720 C
e chlSab2.chr2               31690846   0 -  90373283 C
e papAnu2.chr3              167417669   0 - 180432695 C
e macFas5.chr3              179037898   0 - 192294377 C

a score=66497.000000
s hg38.chr21_GL383581v2_alt    107512 137 +    116689 tttttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcagcctcccaaagtactgggattacaggtgtgagccaccgcacccagccCA
s panTro4.chr21              19612014 129 +  32799110 t--------gtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcagcctcccaaagtactgggattacaggtgtgagccaccgcacccagccCA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34520024 130 +  48394510 t-------tgtatttttagtagagatggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgccttggcctcccaaagtactgggattataggtgtgagccaccgcacccggccCA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20040073 136 +  32716333 tttttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgccc-ccttggcctcccaaagtactgggattacaggcgtgagccaccacacccggtcTA
i nomLeu3.chr25             I 285 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I
e rheMac3.chr3              185194763   0 - 198365852 C
e calJac3.chr21              37510870   0 +  50472720 C
e chlSab2.chr2               31690846   0 -  90373283 C
e papAnu2.chr3              167417669   0 - 180432695 C
e macFas5.chr3              179037898   0 - 192294377 C

a score=7223.000000
s hg38.chr21_GL383581v2_alt    107649 6 +    116689 TTATTA
s panTro4.chr21              19612143 6 +  32799110 TTATTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34520154 6 +  48394510 TTATTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20040209 6 +  32716333 TTATTA
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179037898 6 - 192294377 TTACTA
i macFas5.chr3              C 0 I 1
s papAnu2.chr3              167417669 6 - 180432695 ttacta
i papAnu2.chr3              C 0 I 1
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I
e rheMac3.chr3              185194763 0 - 198365852 C
e calJac3.chr21              37510870 0 +  50472720 C
e chlSab2.chr2               31690846 0 -  90373283 C

a score=685226.000000
s hg38.chr21_GL383581v2_alt    107655 289 +    116689 ttttttgagac-aagtctcgctctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacctccacttcctgggttcaagcgattctcctgcctcagccacccgagtagctgggattacaggtgcgtaccaccacacccagctaactattttttgtatttttagtagagatgggatttcactgtgttagccaggatagtctcgatctcctga-cctcatgatccgcctgcctcggcctcccaaagtgctgggat---tacaggcgtgagccactgtgcccagcT
s panTro4.chr21              19612149 289 +  32799110 ttttttgagac-aagtctcgctctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagccacccgagtagctgggattacaggtgcgtaccaccacacccagctaactattttttgtatttttagtagagatgggatttcactgtgttagccaggatagtctcgatctcctga-cctcatgatccgcctgcctcggcctcccaaagtgctgggat---tacaggcgtgagccactgtgcccagcT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34520160 293 +  48394510 ttttttgagac-gagtcttgctctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagccacccgagtagctgggattacaggtgcgtaccaccatgcccagctaactattttttgtatttttagtagagacgggatttcactgtgttagccaggatagtctcgatctcctgaccctcatgatccgcctgcctcggcctcccaaagtgctgggattactacaggcgtgagccaccgtgcccagct
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20040215 289 +  32716333 ttttttgagac-aagtgtcactatgttgcccaggctggagtgcagtggcatgatcttggctcactgtaacctccgcctcctgagttcaagtgattctcctgcctcagctacccaagtagctgggattacaggtgcgtgccaccacgctcagctaactattttttgtatttttagtagagatgggatttcactgtgttacccaggatagtctcgatctcctga-cctcatgatccgcctgccttggcctcccaaagtgctgggat---tacaggcatgagccaccatgcccagct
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185194763 290 - 198365852 ttttttgagacggagtctcgctctgttgcccaggctggagtacagtggcgtgatcgtggctcactgcaacctccacctcctgggttcaagcgattctcttttctcagccacctgagtagctgggattacaggcgcgtgccaccacgcccagctaactattatttgtatttttcgtagagatgaggtttcactgtgttagccaggatggtctcgatcacctga-ccttgtggtccgcctgcctcggcctcccaaagtgctgggat---tacaggcgtgagccaccgtgcccggcc
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179037905 290 - 192294377 ttttttgagacggagtctcgctctgttgcccaggctggagtacagtggcgtgatcgtggctcactgcaacctccacctcctgggttcaagcgattctcttttctcagccacctgagtagctgggattacaggcgcgtgccaccacgcccagctaactattatttgtatttttcgtagagatgaggtttcactgtgttagccaggatggtctcgatcacctga-ccttgtggtccgcctgcctcggcctcccaaagtgctgggat---tacaggcgtgagccaccgtgcccggcc
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167417676 290 - 180432695 ttttttgagacggagtctcgctctgttgcgcaggctggagtgcagtggcgtgatcgtggctcactgcaacctccacctcttgggttcaagcgattctcttgtctcagccacctgagtagctgggattacaggcgcgtgccaccacgcccagctaactattatttgtatttttagtagagatgaggtttcactgtgttagccaggatggtctcgatcacctga-ccttgtggtccgcctgcctcggcctcccaaagtgctgggat---tacaggcgtgagccaccgtgcccggcc
i papAnu2.chr3              I 1 C 0
s chlSab2.chr2               31690846 290 -  90373283 ttttttgagacggagtctcgctctgttgcccaggctggagtgcagtggcgtgatcgtggctcactgcaacctctacctcctgggttcaagcgattctcctgtctcagccacctgagtagctgggattacaggcgtccgccaccacgcccagctaactattatttgtatttttagtagagatggggtttcattgtgttagccaggatggtctcgatcacctga-ccttgtggtctgcctgcctcagcctcccaaagtgctgggat---tacaggcgtgagccactgtgcccggcc
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I
e calJac3.chr21              37510870   0 +  50472720 C

a score=298732.000000
s hg38.chr21_GL383581v2_alt    107944 111 +    116689 GAAAACATAAAACTTATAAACATGGAGGTGATTCATCATGTTGTCAGGCAATAC---CAAAAAAAAAAA-------------GAGGGGGTGACGGTTAGAAAAAGAGCATAAAAAAGACCAAGAAAA
s panTro4.chr21              19612438 114 +  32799110 GAAAACATAAAACTTATAAACATGGAGGTGATTCGTCATGTTGTCAGGCAATAC---CAAAAAAAAAAA----------AAAGAGGGGGTGACGGTTAGAAAAAGAGCATAAAAAAGACCAAGAAAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34520453 117 +  48394510 GAAAACATATAACTTATAAAAATGGAGGTGATTTGTCATGTTGTCAGGCAATAC---CAAAAAAAAAAA-------AAAAAAGAGGGGGTGACGGTTAGAAAAAGAGCATAAAAAAGACCAAGAAAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20040504 118 +  32716333 gaaaacatataacttataaAAATGGAGGTGATTCGTCATGTTGTCAGGCAATAC---CAAAAAAAAAAA------AAAAAGGGGGGGGGTGACGGTTAGAAAAAGAGCATAAAAAAGACCAAGAAAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185195053 124 - 198365852 GAAAACACATAACTTACAAAAATGGAGGTGATTCCTCATGTTGTCAGACAATAC---CAGCAACAACAACAACAACAAAAAAGAGGTGGTGACGGTCAGAAAAAGAGCATAAAAAAGACCAAGATAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179038195 124 - 192294377 GAAAACACATAACTTACAAAAATGGAGGTGATTCCTCATGTTGTCAGacaatac---cagcaacaacaacaacaacaaaaaAGAGGTGGTGACGGTCAGAAAAAGAGCATAAAAAAGACCAAGATAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167417966 127 - 180432695 gaaaacACATAACTTACAAAAATGGAGGTGATTCCTCATGTTGTCAGACAATaccagcagcaacaacaacaacaacaaaaaagaggtgGTGACGGTCAGAAAAAGAGCATAAAAAAGACCAAGATAC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31691136 124 -  90373283 GAAAACACATAACTTACAAAAATGGAGGTGATTCCTCATGTTGTCAGacaatac---cagcaacaacaacaacaacaaaaaAGAGGTGGTGACGGTCAGAAAAAGAGCATAAAAAAGACCAAGATAC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37510870 117 +  50472720 GACAACATATAACTTATAAAAATGGAGGTGATCCCTCATGTTGTCAGGCAGTAC---CAAAACAGACAG----ACCAAAACAGAGGTGGTGCTGGTCAG---AAGAGCAGAACAAAGACCAAGATAC
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91619089 2276 +  98207768 I
e canFam3.chr31              28134167 191 +  39895921 I

a score=20084.000000
s hg38.chr21_GL383581v2_alt    108055 6 +    116689 CTGTAT
s panTro4.chr21              19612552 6 +  32799110 CTGTAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34520570 6 +  48394510 CTGTAT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20040622 6 +  32716333 CTGTAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185195177 6 - 198365852 CTGTAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179038319 6 - 192294377 CTGTAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167418093 6 - 180432695 CTGTAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31691260 6 -  90373283 CTGTAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37510987 6 +  50472720 GTGGAT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91621365 6 +  98207768 CTGGAT
i mm10.chr16                I 2276 C 0
e canFam3.chr31              28134167 191 +  39895921 I

a score=2730850.000000
s hg38.chr21_GL383581v2_alt    108061 660 +    116689  
s panTro4.chr21              19612558 660 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34520576 659 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20040628 657 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185195183 660 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179038325 660 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167418099 660 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31691266 660 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37510993 690 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91621371 652 +  98207768  
i mm10.chr16                C 0 I 861
s canFam3.chr31              28134358 667 +  39895921  
i canFam3.chr31             I 191 C 0

a score=65385.000000
s hg38.chr21_GL383581v2_alt    108721 21 +    116689 CGTTTTCCTATCTAGATCCGA-
s panTro4.chr21              19613218 21 +  32799110 CGTTTTCCTATCTAGATCCGA-
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34521235 21 +  48394510 CGTTTTCCTATCTAGATCCGA-
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20041285 21 +  32716333 CGTTTTCCTGTCTAGATCCGA-
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185195843 21 - 198365852 TGTTTTTCTATCTAGATCTGA-
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179038985 21 - 192294377 TGTTTTTCTATCTAGATCTGA-
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167418759 21 - 180432695 TGTTTTTCTATCTAGATCTGA-
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31691926 21 -  90373283 TGTTTTTCTATCTAGATCTGA-
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37511683 21 +  50472720 TATTTTCCTATCTAGATCAGA-
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28135025 21 +  39895921 -GTTTTTCTGTCTAGAATCAGG
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91622023 861 +  98207768 I

a score=1261331.000000
s hg38.chr21_GL383581v2_alt    108742 487 +    116689  
s ponAbe2.chr21              34521256 504 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20041306 487 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185195864 501 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039006 501 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167418780 502 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31691947 501 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37511704 484 +  50472720  
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28135046 504 +  39895921  
i canFam3.chr31             C 0 I 197
e mm10.chr16                 91622023 861 +  98207768 I
e panTro4.chr21              19613239   0 +  32799110 C

a score=418326.000000
s hg38.chr21_GL383581v2_alt    109229 166 +    116689 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACTCCTG-GCAATGGTCTATGCTTCCTAA-GAGAGGATGGACTCTTCATTTTGGGATATACGGAATCACTCTCTTTTGCTTCCAAACAAATAAAGGAAGGTCTTCTGAATATTTATTCAAAAGATGAAATATT
s ponAbe2.chr21              34521760 166 +  48394510 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACTCCTG-GCAATGGTCTATGCTTCCTAA-GAGAGGATGGACTCTTCATTTTGGGATATATGGAATCACTCTCTTTTGCTTCCAAACAAATAAAGGAAGGTCTTCTGAATATTTATTCAGAAGATGAAATATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20041793 166 +  32716333 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACTCCTG-GCAATGGTCTATGCTTCCTAA-GAGAGGATGGAGTCTTCATTTTGGGATATACGGAATCACCCTCTTTTGCTTCCAAACAAATAAAGGAAGGTCTTCTGAATATTTATTCAGAAGATGAAATATT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185196365 162 - 198365852 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACGTCTG-GCAATGGTC--TGTTTCCTGA-GAGAGGATGGACTCTTCCTTTCGGGACATACGGAATCATTCTCTTTTGCTTCTAAACAAGTAAAGGAAGG--TTCCGAATATTTATTCAGAAGATGAAATATT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039507 162 - 192294377 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACGTCTG-GCAATGGTC--TGTTTCCTGA-GAGAGGATGGACTCTTCCTTTCGGGACATACGGAATCATTCTCTTTTGCTTCTAAACAAGTAAAGGAAGG--TTCCGAATATTTATTCAGAAGATGAAATATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167419282 164 - 180432695 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACGTCTG-GCAATGGTCTATGTTTCCTGA-GAGAGGATGGACTCTTCCTTTCGGGACATACGGAATCATTCTCTTTTGCTTCTAAACAAGTAAAGGAAGG--TTCCGAATATTTATTCAGAAGATGAAATATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31692448 166 -  90373283 GTATGTGTTTTCTGGCAATAACCTCCTCCTTGCCAACGTCTG-GCAATGGTCTGTGTTTCCTGA-GAGAGGATGGACTCTTCCTTTTGGGACATATGGAATCATTCTCTTTTGCTTCTAAACAAGTAAAGGAAGGTCTTCTGAATATTTATTCAGAAGATGAAATATT
i chlSab2.chr2              C 0 I 318
s calJac3.chr21              37512188 161 +  50472720 GTACGTGTTTTCTGGCAATAACCTGTTCCTTGCCAACTTCTG-GCAATGGTCTTTGCCGCCTAA-GAGAGGATGCATTCTTCAATTTGGGATATACAGAATCATTCTCTTTCGCCTCTAAAC-----AAGGAAAGTCTTCTGAATATTTATTCAGAAGATGAAATATT
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28135747 152 +  39895921 GCATGTTTTCCAGAGAAATAATGCCTTCCTTGCCA---TGTGTGCTATGGTCTACACTTCCTAAGGAAAAGATAGACTCTTCATTTTGGGATTCAAGGAATCACTTTCTTTTGCTTCTAAACAAGTGAA-------------AATGTATCTTCTGAATATGAAATATT
i canFam3.chr31             I 197 C 0
e mm10.chr16                 91622023 861 +  98207768 I
e panTro4.chr21              19613239   0 +  32799110 C

a score=458167.000000
s hg38.chr21_GL383581v2_alt    109395 173 +    116689 ATCTTTGCAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAATGGAT--AGAGAGCAGGTTAATAAATCATCATTGGGTCATTCTTTAGTGTAAAACAAAGGAAATTAAACTGTGACCTGTGTTAAAGTA--TTAATAAAATATCAC
s ponAbe2.chr21              34521926 169 +  48394510 ATCTTTGCAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAACG------GAGAGCAGGTTAATAAATCATCATTGGATCATTCTTTAGTGTAAAACAAAGGAAATTAAACTGTGACCTGTGTTAAAGTA--TTAATAAAATATCAC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20041959 166 +  32716333 ATCTTTGTAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAATGGAT--AGAGAGCAGGTTAATAAATCATCATTGGGTCATTCTTTAGTGTGAAACAAAGGAAATTAAACTGTGACCTGTGTTA---------AATAAAATATCAC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185196527 173 - 198365852 ATCTTTGGAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAATGGAT--AGAGAGCAGATTAATAAATCATCATTGGGTCATTCTTTAGAGTAAAACAAAGGAAATTAAACTGTGACCTGTGTTGAAGTA--TTAATAAAATATCAC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039669 173 - 192294377 ATCTTTGGAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAATGGAT--AGAGAGCAGATTAATAAATCATCATTGGGTCATTCTTTAGAGTAAAACAAAGGAAATTAAACTGTGACCTGTGTTGAAGTA--TTAATAAAATATCAC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167419446 173 - 180432695 ATCTTTGGAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAATGGAT--AGAGAGCAGGTTAATAAATCATCATTGGGTCATTCTTTAGagtaaaacaaaggaaattaaacTGTGACCTGTGTTGaagta--ttaataaaatatcac
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31692932 173 -  90373283 ATCTTTGGAGTAATGTGAAACAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCC------AAAGTAAATGGAT--AGAGAGCAGGTTAATAAATCATCATTGGGTCATTCTTTAGAGTAAAACAAAGGAAATTAAACTGTGACCTGTGTTGAAGTA--TTAATAAAATATCAC
i chlSab2.chr2              I 318 C 0
s calJac3.chr21              37512349 179 +  50472720 ATCTTTACAGTAATGTGAAATAAAACTAAGCTACATTAGAAAAAGTGATTAATTACAGCAAGCCAAAAAAAAAAAAAATGGAT--AGAGAACAGGGTAATAAATCATCATTGGGTCATTCTTTAGAGTAAAACAAAGGATATTAAATCGTGACCTGTGTTGAAGTA--TTAATAAAATATCAC
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28135899 158 +  39895921 --------AGTAATGTGA---GTAACCTAGCTGTATTAGAGAAAACGATTAACTACAGTAGGCC------AAAGAAAACTGATAAAAAGAGCAGGATAATTAATGATCATTGGGTCATCCTCT-GAGCTGAGGAAAGGAAATTAAATTATGACCTGTGTTAAAATGGCCCAATAAA-------
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91622023 861 +  98207768 I
e panTro4.chr21              19613239   0 +  32799110 C

a score=21868.000000
s hg38.chr21_GL383581v2_alt    109568 7 +    116689 AGTCAAA
s panTro4.chr21              19613239 7 +  32799110 AGTCAAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522095 7 +  48394510 AGTCAAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042125 7 +  32716333 AGTCAAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185196700 7 - 198365852 AGTCAAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039842 7 - 192294377 AGTCAAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167419619 7 - 180432695 agTCAAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693105 7 -  90373283 AGTCAAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37512528 7 +  50472720 AGTCAAT
i calJac3.chr21             C 0 T 824
e mm10.chr16                 91622023 861 +  98207768 I
e canFam3.chr31              28136057 0 +  39895921 C

a score=76844.000000
s hg38.chr21_GL383581v2_alt    109575 24 +    116689 CAGGAGTTGGATTTCTGGGATGGG
s panTro4.chr21              19613246 24 +  32799110 CAGGAGTTGGATTTCTGGGATGGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522102 24 +  48394510 CAGGAGTTGGATTTCTGGGATGGG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042132 24 +  32716333 AAGGAGTTGGATTTCTGGGATGGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185196707 24 - 198365852 CAGGAGTTGGATTTCTGGGAAGGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039849 24 - 192294377 CAGGAGTTGGATTTCTGGGAAGGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167419626 24 - 180432695 CAGGAGTTGGATTTCTGGGAAGGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693112 24 -  90373283 CAGGAGTTGGATTTCTGGGAAGGG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37511711 24 +  50472720 CAGGAGTTGGATTTCTGGGATGGG
i calJac3.chr21             T 824 I 800
e mm10.chr16                 91622023 861 +  98207768 I
e canFam3.chr31              28136057  0 +  39895921 C

a score=268641.000000
s hg38.chr21_GL383581v2_alt    109599 83 +    116689 TGTTCACTACTGGGATTGTTTGGCAAGTTATCTGTTCTGGAGACCA-TTTTCAATTGATTTCCCAATGTGATGTCAAATAATTT
s panTro4.chr21              19613270 83 +  32799110 TGTTCACTACTGGGATTGTTTGGCAAGTTATCTGTTCTGGAGACCA-TTTTCAATTGATTTCCCAATGTGATGTCAAATAATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522126 83 +  48394510 TGTTCAGTACTGGGATTGTGTGGCAAGTTATCTGTTCTGGAGACCA-TTTTCAACTGATTTGCCAATGTGATGTCGAATAATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042156 83 +  32716333 TGTTCACTACTAGGATTGTTTGGCAAGTTATCTGTTCTGGAGACCA-TTTTCAATTGATTTCCCAATGTGATGTCCAATAATTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185196731 83 - 198365852 TGTTCACTACTGGGATTGTCTGGCAAGTTAACTGTTCTGGAGACCA-TTTTCAATTAATTTCTCAATGTAATATCAAATAATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039873 83 - 192294377 TGTTCACTACTGGGATTGTCTGGCAAGTTAACTGTTCTGGAGACCA-TTTTCAATTGATTTCTCAATGTAATATCAAATAATTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167419650 83 - 180432695 TGTTCACTACTGGGATTGTCTGGCAAGTTAACTGTTCTGGAGACCA-TTTTCAATTGATTTCTCAATGTGGTATCAAATAATTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693136 84 -  90373283 TGTTCACTACTGGGATTGTCTGGCAAGTTAACTGTTCTGGAGACCATTTTTCAATTGATTTCTCAATGTGATATCAAATAATTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37512535 83 +  50472720 AGTTCACTACTGGGATCGTTTGGCGTGTTAACTGTTCTGGATACCA-TTTTCAACCGACTTTTCAATGTGATGTCAAATAATTT
i calJac3.chr21             I 800 C 0
s canFam3.chr31              28136057 80 +  39895921 TATTTA--ATTGGTATTATTTGGGAAGCTAACGACCCTGTAGCCTG-CATTCAGTTGATTTCTCAATGTGGTGTCC-ATAATTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91622023 861 +  98207768 I

a score=1490567.000000
s hg38.chr21_GL383581v2_alt    109682 392 +    116689  
s panTro4.chr21              19613353 392 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522209 395 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042239 395 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185196814 397 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179039956 397 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167419733 393 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693220 396 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37512618 377 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91622884 384 +  98207768  
i mm10.chr16                I 861 C 0
s canFam3.chr31              28136137 509 +  39895921  
i canFam3.chr31             C 0 I 197

a score=780050.000000
s hg38.chr21_GL383581v2_alt    110074 187 +    116689 CAG-------------------------------------------------------------------------CAAAGATATTTTCCCAAGTAACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAATATCAATTTGTGCAGAGCTATTTGGTTCCCGAGTACTGTCTATAAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACA-----GCAGTGAG
s panTro4.chr21              19613745 187 +  32799110 CAG-------------------------------------------------------------------------CAAAGATATTTTCCCAAGTAACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCCACTGCGGCTTTGTTGGAGATAACAATATCAATTTGTGCAGAGCTATTTGGTTCCCGAGTACTGTCTATAAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACA-----GCAGTGAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522604 192 +  48394510 CAG-------------------------------------------------------------------------GAAAGATATTTGCCCAAGTAACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAATATCAATTTGTGCAGAGCTATTTGGTTCGCGAGTACTGTCTATGAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACAGCAGTGCAGTGAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042634 187 +  32716333 CAG-------------------------------------------------------------------------GAAAGATATTTTCCCAAGTAACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAATATCGATTTGTGCAGAACTATTTGGTTCCCGAGTACTGTCTATGAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACA-----GCAGTGAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185197211 187 - 198365852 CAG-------------------------------------------------------------------------GAAAGATATTTTCCCAAGTCACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAACATCAATTTGTGCAGAGCTATTTGGTTCCCGAGTACTGTCTATAAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACA-----ACAGTGAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179040353 187 - 192294377 CAG-------------------------------------------------------------------------GAAAGATATTTTCCCAAGTCACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAACATCAATTTGTGCAGAGCTATTTGGTTCCCGAGTACTGTCTATAAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACA-----ACAGTGAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167420126 187 - 180432695 CAG-------------------------------------------------------------------------GAAAGATATTTTCCCAAGTCACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAACATCAATTTGTGCAGAGCTATTTGGTTCCCGAGTACTGTCTATAAGTGCTTGCAGGTTCGATCctgaga-agggagaaaaaca-----acagtgag
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693616 187 -  90373283 CAG-------------------------------------------------------------------------GAAAGATATTTTCCCAAGTCACTTACTCTAGTGGGAATACCAGCTCTTTCCGCTTTATCTAACCCAGCTACTGCGGCTTTGTTGGAGATAACAACATCAATTTGTGCAGAGCTATTTGGTTCCCGAGTACTGTCTATGAGTGCTTGCAGGTTCGATCCTGAGA-AGGGAGAAAAACA-----ACAGTGAG
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37512995 187 +  50472720 GAG-------------------------------------------------------------------------GAAAGACCCTTTCTCAAGTAACTTACTCTGGTGGGAATACCAGCTCGTTCTGCTTTGTCTAACCCAGCCACTGCGGCTTTGTTGGAGATAACAACATCAATTTGTGCAGAGCTCTTCGGTTCCCGAGTACTGTCTATGAGTGCTTGCAGGTTCGATCCTAAGA-AGAGAGAAAAACA-----CCAGTGAG
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91623268 258 +  98207768 CAGGGCCTGGAGGTGTGGGCACAGTGGTACATCCTCGGCTCCAGGCCAAGCATCTGCCCACCAGGCCTGGCCTGCAGGAAGGCCTCTTCTGCAGTCACTCACCCTGGTGGGAATACCAGCTCGCTCAGCTCGGTCTAAGCCGGCTACGGCGGCTTTGTTGGAGATGACAAGAACAATATGTGAGGAGCTCTTGGGATCCCGGGTGCTATCTATGAGCGCCTGGAGGTTCGACCCTGAAA-AAGCAGGAAAGCA-------AGTGAG
i mm10.chr16                C 0 C 0
s canFam3.chr31              28136843 188 +  39895921 CAG-------------------------------------------------------------------------GAAAGACACTTTTCAAAATAACTCACTCTGGTGGGAATTCCAGCTCTTTCTGCTTTATCTAAACCAGCCACTGCAGCTTTGTTGGAGATAACAACAACAATGTGTGCACAGCTACTGGGCTCCCTAGTACTGTCTATAAGAGCTTGCAGGTTTGATCCTGAAAGAGAGAGAAACATA-----TTCGTAAG
i canFam3.chr31             I 197 C 0

a score=12160.000000
s hg38.chr21_GL383581v2_alt    110261 11 +    116689 CTCATACTACT
s panTro4.chr21              19613932 11 +  32799110 CTCATACTACT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522796 11 +  48394510 CTCATACTACt
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042821 11 +  32716333 CTCATACTTCT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185197398  7 - 198365852 TTCATAC----
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179040540  7 - 192294377 TTCATAC----
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167420313  7 - 180432695 ttcatac----
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693803  7 -  90373283 TTCATAC----
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37513182  7 +  50472720 CTCACAC----
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91623526 11 +  98207768 CTGACACTTCT
i mm10.chr16                C 0 I 10
e canFam3.chr31              28137031  0 +  39895921 C

a score=784639.000000
s hg38.chr21_GL383581v2_alt    110272 298 +    116689 --------------ACttctttttttttttttgagagggagtctcactctgtcgcccaggctaggag-tgcagtgccacgatctgggttcactgcaacctccacctcccgggttcaagcaattatcctgcctcagcctcctgagtagctgggattacaggagcccaccaccacacctgg-ctaa--tttttgtatttttagtagagat-ggggtttcaccacgttggccaggctcgtctggaactcctgacatcaggtgatccgcccacctcggcctcccaaat--ttgggattacaggcatgagccaccgcgcccaac
s panTro4.chr21              19613943 301 +  32799110 ---TCT--------CCttttttttttttttttgagagggagtctcactctgtcgcccaggctaggag-tgcagtggcacgatctgggttcactgcaacctccacctcccgggttcaagcaattatcctgcctcagcctcctgagtagctgggattacaggagcccaccaccacacctgg-ctaa--tttttgtatttttagtagagat-ggggtttcaccacgttggccaggctcgtctggaactcctgacatcaggtgatccgcccacctcggcctcccaaat--ttgggattacaggcgtgagccaccgcgcccaac
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34522807 304 +  48394510 tcttct--------ttttttttttttttttttgagagggagtctcactctgtcgcccacgctgggag-tgcagtggtacgatctgggttcactgcaacctccacctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggagcccaccaccacacctgg-ctaa--tttttgtatttttagtagagat-ggggtttcaccatgttggccaggctcgtctggaactcctgacaccaggcgatctgcccacctcggcctcccaaat--ttgggattacaggcgtgagccaccgcgcccagc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20042832 313 +  32716333 TCttcttcttcttcttttttttttttttttttgacagggagtctcactctgtcgcccaggctgggagttgcagtggcacgatctgggttcactgcaagctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgagattacaggagtccgccaccatacctgg-ctaa--tttttgtatttttagtagagac-ggggtttcaccatgttggccaggctcgtctggaactcctgacatcaggtgatctgcccacctcggcctcccaaag--ttgggattacaggcgtgagccaccgcgcccagc
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185197405 291 - 198365852 -----------------------tttttttttgagacagagtctca--ctgtcgcccaggctgggag-tgcagtggcacgatcttggttcactgcaacctctacctcctgggttcaaggaattctcctgcctcagcctcccaagtagctggaattacaggcatgtgccaccatgcctgg-ctaatttttttatatttttagtagagat-ggggtttcgccatgttgaccaggctggtctggaactcctgacattagttgatctgcccaccttggcctcccaaagtattgggattacaggcgtgagccactgtacccggA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179040547 291 - 192294377 -----------------------tttttttttgagacagagtctca--ctgtcgcccaggctgggag-tgcagtggcacgatcttggttcactgcaacctctacctcctgggttcaaggaattctcctgcctcagcctcccaagtagctggaattacaggcatgtgccaccatgcctgg-ctaatttttttatatttttagtagagat-ggggtttcaccatgttgaccaggctggtctggaactcctgacattaggtgatctgcccaccttggcctcccaaagtattgggattacaggcgtgagccactgtacccggA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167420320 290 - 180432695 ------------------------ttttttttgagacaaagtctca--ctgtcgcccaggctgggag-tgcagtggcacgatcttggttcactgcaacctctacctcctgggttcaaggaattctcctgcctcagcctcccaagtagctggaattacaggcatgtgccaccacgcctgg-ctaatttttttatatttttagtagagac-ggggtttcaccatgttgaccaggctggtctggaactcctgacattaggtgatctgcccaccttggcctcccaaagtattgggattacaggcgtgagccactgtacccgga
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31693810 293 -  90373283 -----------------------tttttttttgagacagagtctcactctgtcgcccaggctgggag-tgcagtggcacaatcttggttcactgcaacctccacctcctgggttcaaggaattctcctgcctcagcctcccaagtagctggaattacaggcatgtgccaccacacccgg-ctaatttttttatatttttagtagagac-ggggtttcaccatgttgaccaggctggtctggaatgcctgacattaggtgatctgcccaccttggcctcccaaggtattgggattacaggcgtgagccactgtacccagc
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37513189 296 +  50472720 --------------tttttcttttttttttttgagacagagtct----ctgtcatctaggct-ggag-tgcagtggcatgatcttggcttactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctacaaagt-gctgggattacaggcgtgagtcaccatgcccggcctaa--tttttgtatttttagtagaggtgggggtttcaccatgttggccaggctggtctggaactcctgacctcaggtgatctgcctgccttagccttccaaagtgctgggattggaggcgtgaaccactgtgctcagc
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91623537  10 +  98207768 I
e canFam3.chr31              28137031   0 +  39895921 C

a score=43752.000000
s hg38.chr21_GL383581v2_alt    110570 12 +    116689 cTCACACTTTTT
s panTro4.chr21              19614244 12 +  32799110 cTCACACTTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34523111 12 +  48394510 cTCACACTTCTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20043145 12 +  32716333 cTCATACTTCTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185197696 12 - 198365852 CTCACACTTCTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179040838 12 - 192294377 CTCACACTTCTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167420610 12 - 180432695 ctcacacttctt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31694103 12 -  90373283 cTCACACTTCTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37513485 12 +  50472720 cTCACACttttt
i calJac3.chr21             C 0 I 1229
s canFam3.chr31              28137031 12 +  39895921 TTCACGTTTCTT
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91623537 10 +  98207768 I

a score=409953.000000
s hg38.chr21_GL383581v2_alt    110582 119 +    116689 ------AAAAAAAGAGATGTGCCATTTTGAATAGGGGACAGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTCCCTTTC----TCTTGgcacaggcaactaa
s panTro4.chr21              19614256 119 +  32799110 ------TAAAAAAGAGATGTGCCATTTTGAATAGGGGACAGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTCCCTTTC----TCTTGgcacaggcaactaa
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34523123 119 +  48394510 ------AAAAAAAGAGATGTGCCATTTTGAATAGGGGACGGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTTCCTTTC----TCTTGgcacaggcaactaa
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20043157 118 +  32716333 ------AAAAAAAGAGATGTGCCATTTTGAATA-GGGACGGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--AATACGTGAGGCTTCTAAATTCCCTTTC----TCTTGgcacaggcaactaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185197708 119 - 198365852 ------AAAAAAAGAGATGTGCTGTTTTGAATAGGGGACTGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTCCCCTTC----TCTTGgcataggcaactaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179040850 119 - 192294377 ------AAAAAAAGAGATGTGCTGTTTTGAATAGGGGACTGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTCCCTTTC----TCTTGgcataggcaactaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167420622 119 - 180432695 ------aaaaaaagagaTGTGCTGTTTTGAATAGGGGACTGTCAAATTTTCTGAATAAATGTGTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTCCCTTTC----TCTTGGCATAGGCAACTAA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31694115 119 -  90373283 ------AAAAAAAGAGATGTGCTGTTTTGAATAGGGGACTGTCAAATTTTCTGAATAAATGTCTTGG-AAAAGACTGGT--GATATGTGAGGCTTCTAAATTCCCTTTC----TCTTGgcacaggcaactaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37514726 124 +  50472720 ------AAGAAAAGGTATGTGCTATTTTGAATAGCAGATGGTCAAGTTTTCTGAATAAATGTCTTGGAAAAAGATTGGT--GATATATGAGGCTCTTAAATTCCCTTTCTCTTTCTTTgcacaggcaactaa
i calJac3.chr21             I 1229 C 0
s canFam3.chr31              28137043 127 +  39895921 AAAAAAAAACAAAAAAAAGTTCTATTTTGCATAGTAAATGGTCAAGATTTCTGAACAAATGTCTTAG-AAAAGACTGGCAAAACATGTGAAGCTTTTAAATTTCCTTTC----TCTCGGGATAATGGATTAA
i canFam3.chr31             C 0 I 1048
e mm10.chr16                 91623537  10 +  98207768 I

a score=2941088.000000
s hg38.chr21_GL383581v2_alt    110701  997 +    116689  
s panTro4.chr21              19614375  997 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34523242 1002 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20043275  988 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185197827  994 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179040969  995 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167420741 1000 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31694234  988 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37514850 1007 +  50472720  
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91623537   10 +  98207768 I
e canFam3.chr31              28137170 1048 +  39895921 I

a score=593727.000000
s hg38.chr21_GL383581v2_alt    111698 265 +    116689 ccagcactttgggaggccaaggcaggcggatcatactgaggtcaagagttcaagaccagcctgaccagcctggccaacatgatgaaaccccatctctactaaaaatacaaaaaattagccaggcatagtggcaggtgcctgtaatcccagctactcaggaggctgagacagaagaatcacttgaaactgggaggcggagtttgcagtgagccgagtctgcgccactgcactccagcctgggcgacagagtgaga-ctctatctcaa
s panTro4.chr21              19615372 265 +  32799110 ccagcactttgggaggtcaaggcaggcggatcatactgaggtcaagagttcaagaccagcctgaccagcctggccaacatgatgaaaccccatccctactaaaaatacaaaaaattagccaggcatagtggcaggtgcctgtaatcccagctactcaggaggctgagacagaagaatcacttgaaactgggaggcggagtttgcagtgagccgagtctgtgccactgcacaccagcctgggcgacagagtgaga-ctctatctcaa
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20044263 265 +  32716333 ccagcactttgggaggccaaggcaggcggatcatcctgaggtcaagagttcaagaccagcctgatcagcctggccaacatgatgaaaccacatccctactaaaaatacaaaaaattagccaggcatggtggcaggtacctgtaatcccagctactcaggaggctgagacagaagaattgcttgaaactgggaggcagagtttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagtgaga-ctctatctcaa
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185198821 265 - 198365852 ccaggactttgggaggccaaggcaggtggatcaccctgaggtcaggagttcgagactagcctgaccagcctggccaacatgacgaaaccccatccctactaaaaacacaaaaaatgagcccggcatggtagcaggcacctgtaatcccagctactcaggagggtgaggcagaagaatcgtttgaaactgggaggcagtgtttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagtgaga-ttctatctcaa
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179041964 265 - 192294377 ccaggactttgggaggccaaggcaggtggatcaccctgaggtcaggagttcgagactagcctgaccagcctggccaacatgacgaaaccccatccctactaaaaacacaaaaaatgagcccggcatggtagcaggcacctgtaatcccagctactcaggagggtgaggcagaagaatcgtttgaaactgggaggcagtgtttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagtgaga-ttctatctcaa
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167421741 266 - 180432695 ccaggactttgggaggccaaggcaggtggatcaccctgaggtcaggagttcgagactagcctgaccagcctggccaacatgacgaaaccccatccctactaaaaacacaaaaaatgagcccggcatggtagcaggcacctgtaatcccagctactcaggaggctgaggcagaagaatcgtttgaaactgggaggcagtgtttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagtgagatttctatctcaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31695222 265 -  90373283 ccagcactttgggaggtcgaggtaggtggatcaccctgaggtcaggagtttgagactaacctgaccaggctggccaacatgacaaaacctcatccctactaaaaacacaaaaaatgagcccggcatggtagcaggcacctgtaatcccagctactcaggaggctgaggcagaagaatcgcttgaaactgggaggcagtgtttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagtgaga-ttctatctcaa
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37515857 254 +  50472720 ccagcactttgggaggccgatggggctggatcaccctgaggtcaggagtttgagac---------cagcctggccaacatggcaaaactccatccctact--aaatacaaaaaattagctgggcatggtggcaggcacctttaatcctaactatttgggaggctgaggcagaagaactgcttgaacctgggaggtggagtttgcagtaagccaagattgcgccatagcactccagcctgggcaaaagagtgaga-ctttgtgtcaa
i calJac3.chr21             C 0 C 0
e mm10.chr16                 91623537  10 +  98207768 I
e canFam3.chr31              28137170 1048 +  39895921 I
e ponAbe2.chr21              34524244   0 +  48394510 C

a score=705561.000000
s hg38.chr21_GL383581v2_alt    111963 437 +    116689 aaaca--aaaacaaaaacaaaacaaaaaaaaactgaaataaaataactggattgtttgtaacac----aaagaataaatgcttgaggtgatgaata-ccccatttacagggatgtgattattacaggttgtatggctgtatcaaaagatctcatgtaccctataaatatatatacctaccatgtacccatacaaattaaaaaTTAAAAAAACTCCCTTCCTCTTGGGATAATGGATTAATAGATTGTGAAAAGCACAGATATTCCTGGatagcctccagttccatccatattgctgcaaacgacgtggtttAGGATATGTAATTGCTCCTAGGATATGTAATTGCTCCCACAAATTCTGTATCTTGTGATCTAGCATTGTAGTAGAAACAGTATAACATTATGTTAAAACTGACTGATGAGAAATAAGCTGCTTAATTAAGCAA
s panTro4.chr21              19615637 437 +  32799110 aaaca--aaaacaaaaacaaaacaaaaaaaaactgaaataaaataactggattgtttgtaacac----aaagaataaatgcttgaggtgatgaata-ccccatttacagggatgtgattattacaggttgtatggctgtatcaaaagatctcatgtaccctataaatatatatacctaccatgtacccatacaaattaaaaaTTAAAAAAACTCCCTTCCTCTTGGGATAATGGATTAATAGATTGTGAAAAGCACAGATATTCCTGGatggcctccagttccatccatattgctgcaaatgacgtggtttAGGATATGTAATTGCTCCTAGGATATGTAATTGCTCCCACAAATTCTGTATCTTGTGATCTAGCATTGTAGTAGAAACAGTATAACATTATGTTAAAACTGACTGATGAGAAATAAGCTGCTTAATTAAGCAA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20044528 431 +  32716333 aaaca-------------aaaacaaaaaaaaactgaaataaaataattggattgtttgtaacacaaagaaagaataaaggcttgaggtgatgaatacccccatttaccgggatgtgattattacaggttgtatggctgtatcaaaagatctcatgtaccccataaatatatatacctaacatgtacccatacaaattaaaaaTTTAAAAAATTCCCTTCCTCTTGGGATAATGGATTAATAGACTGTGAAAAGCACAGATATTCCTGGatggcctccagttccatccatattgctgcaaatgatgtggtttAGGATATGTAATTGCTCCTAGGATATGTAATTGCTCCTACAAATTCTGTATCTTGTCATCTAGCATTGTAGTAGAAACAGTATAACATTATGTCAAAACTGACTGATGAGAAATAAGCTGCTTAATTAAGCAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185199086 403 - 198365852 aaaac------------caaacaaacaacacactgaaataatataactagattgtttgtaacacaaagaaagaataaatgcttgaggtgatgaata-cc---------gggacgtgattattacaggttgtatggctgtatcaaaagatctcatgtaccccataaatatatatacctaccatgaactcataaaaattaaaaaTTAAAAAAATTCCCTTCCTCTTGGGATAATGGATTAATAGATTGTGAAAAGCACGGATATTCCTGGatggcctccagttccatccatattgctgcagatgatgtggtttAGGATATGTAATTGCTCCT-------------------ACAAATATTGTATCTTATGATCTAGCACTGTAGTAGAAACAGTATAACATTATGTCAAAACTGACTGATGAGAAATAAGCTGCTTAATTAAGCAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179042229 403 - 192294377 aaaac------------caaacaaacaacacactgaaataatataactagattgtttgtaacacaaagaaagaataaatgcttgaggtgatgaata-cc---------gggacgtgattattacaggttgtatggctgtatcaaaagatctcatgtaccccataaatatatatacctaccatgaactcataaaaattaaaaaTTAAAAAAATTCCCTTCCTCTTGGGATAATGGATTAATAGATTGTGAAAAGCACGGATATTCCTGGatggcctccagttccatccatattgctgcagatgatgtggtttAGGATATGTAATTGCTCCT-------------------ACAAATATTGTATCTTATGATCTAGCACTGTAGTAGAAACAGTATAACATTATGTCAAAACTGACTGATGAGAAATAAGCTGCTTAATTAAGCAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167422007 411 - 180432695 aaaac----caaccaaacaaacaaacaacacactGAAATaatataactggattgtttgtaacacaaagaaagaataaatgcttgaggtgatgaata-cc---------gGGACGTGATTATTACAGGTTGTATGGCTGTATCAAAagatctcatgtaccccataaatatatatacctaccatgaacccataaaaattaaaaattaaaaaaattccctTCCTCTTGGGATAATGGATTAATAGATTGTGAAAAGCACGGATATTCCTggatggcctccagttccatccatattgctgcagaTGATGTGGTTTAGGATATGTAATTGCTCCT-------------------ACAAATATTGTATCTTATGATCTAGCATTGTAGTAGAAACAGTATAACATTATGTCAAAACTGACTGATGAGAAATAAGCTGCttaattaagcaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31695487 415 -  90373283 aaaaccaaacaaacaaacaaacgaacaacacactgaaataatataactggattgtttgtaacacaaagaaagaataaatgctggaggtgatgaata-cc---------aggacgtgattattacaggttgtatggctgtatcaaaagatctcatgtaccccataaatatatatacctaccatgaacccataaaaattaaaaaTTAAAAAAATTCCCTTCCTCTTGGGATAATGGATTAATAGATTGTGAAAAGCACGGATATTCCTGGatggcctccagttccatccatattgctgcagatgatgtggtttAGGATATGTAATTGCTCCT-------------------ACAAATTCTGTATCTTATGATCTAGCATTGTAGTAGAAACAGTATAACATTATGTCAAAACTGACTGATGAGAAATAAGCTGCTTAATTAAGCAA
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91623537  10 +  98207768 I
e canFam3.chr31              28137170 1048 +  39895921 I
e ponAbe2.chr21              34524244   0 +  48394510 C
e calJac3.chr21              37516111   0 +  50472720 C

a score=64400.000000
s hg38.chr21_GL383581v2_alt    112400 34 +    116689 GAAAAACTGACCCTCTCAAGAACAAACCACTATG
s panTro4.chr21              19616074 34 +  32799110 GAAAAACGGACCCTCTCAAGAACAAACCACTATG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20044959 34 +  32716333 GAAAAACTGACCTTCTCAAGAACAAACCACTATG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185199489 30 - 198365852 GAAAAATTGACCCTCTCAAG----AACCACTATG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179042632 30 - 192294377 GAAAAATTGACCCTCTCAAG----AACCACTATG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167422418 30 - 180432695 gaaaaattgACCCTCTCAAG----AACCACTATG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31695902 30 -  90373283 GAAAAATTGACCCTCTCAAG----AACCACTATG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28138218 34 +  39895921 GAAAAATCAACCCTCTTAAGAAGAAAGCACTATG
i canFam3.chr31             I 1048 I 3
e mm10.chr16                 91623537 10 +  98207768 I
e ponAbe2.chr21              34524244  0 +  48394510 C
e calJac3.chr21              37516111  0 +  50472720 C

a score=57159.000000
s hg38.chr21_GL383581v2_alt    112434 32 +    116689 CTATGACTCTTACAATAGTTTCTTTAAAAAAA
s panTro4.chr21              19616108 32 +  32799110 CTATGACTCTTACAATAGTTTCTTTAAAAAAA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20044993 32 +  32716333 CTATGACTCTTACAATAGTTTCTTTAAAAAAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185199519 32 - 198365852 CTATGACCATTACAATAGTTTCTTTAAAAAAA
i rheMac3.chr3              C 0 I 11
s macFas5.chr3              179042662 32 - 192294377 CTATGACCATTACAATAGTTTCTTTAAAAAAA
i macFas5.chr3              C 0 I 8
s papAnu2.chr3              167422448 32 - 180432695 CTATGACCATTacaatagtttctttaaaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31695932 32 -  90373283 CTATGACCATTACAATAGTTTCTTTAAAAAAt
i chlSab2.chr2              C 0 I 9
e mm10.chr16                 91623537 10 +  98207768 I
e canFam3.chr31              28138252  3 +  39895921 I
e ponAbe2.chr21              34524244  0 +  48394510 C
e calJac3.chr21              37516111  0 +  50472720 C

a score=-8366.000000
s hg38.chr21_GL383581v2_alt    112466 6 +    116689 AAAAat---
s panTro4.chr21              19616140 5 +  32799110 AAAa-t---
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045025 4 +  32716333 AAAA-----
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179042702 2 - 192294377 -------ac
i macFas5.chr3              I 8 I 1
s papAnu2.chr3              167422480 4 - 180432695 -----ttat
i papAnu2.chr3              C 0 I 7
s chlSab2.chr2               31695973 2 -  90373283 ------aa-
i chlSab2.chr2              I 9 C 0
e mm10.chr16                 91623537 10 +  98207768 I
e canFam3.chr31              28138252 3 +  39895921 I
e ponAbe2.chr21              34524244 0 +  48394510 C
e rheMac3.chr3              185199551 11 - 198365852 I
e calJac3.chr21              37516111 0 +  50472720 C

a score=1149536.000000
s hg38.chr21_GL383581v2_alt    112472 644 +    116689  
s panTro4.chr21              19616145 646 +  32799110  
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045029 635 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185199562 648 - 198365852  
i rheMac3.chr3              I 11 C 0
s macFas5.chr3              179042705 648 - 192294377  
i macFas5.chr3              I 1 C 0
s papAnu2.chr3              167422491 648 - 180432695  
i papAnu2.chr3              I 7 C 0
s chlSab2.chr2               31695975 636 -  90373283  
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91623537  10 +  98207768 I
e canFam3.chr31              28138252   3 +  39895921 I
e ponAbe2.chr21              34524244   0 +  48394510 C
e calJac3.chr21              37516111   0 +  50472720 C

a score=26064.000000
s hg38.chr21_GL383581v2_alt    113116 11 +    116689 CTTACAATAGC
s panTro4.chr21              19616791 11 +  32799110 CTTACAATAGC
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045664 11 +  32716333 CTTACAATAGT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200210 11 - 198365852 CTTACAATAGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043353 11 - 192294377 CTTACAATAGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167423139 11 - 180432695 ctTACAATAGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31696611 11 -  90373283 CTTACAATAGT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28138255 11 +  39895921 CTTATAATAGC
i canFam3.chr31             I 3 C 0
e mm10.chr16                 91623537 10 +  98207768 I
e ponAbe2.chr21              34524244  0 +  48394510 C
e calJac3.chr21              37516111  0 +  50472720 C

a score=214419.000000
s hg38.chr21_GL383581v2_alt    113127 78 +    116689 TTCTTTGCTTTATTATCAACTTGGGCCTAAAGTACATTAAAACCTTAAGATCGACCTGTAAAGCAATTAAACTTCTGG
s panTro4.chr21              19616802 78 +  32799110 TTCTTTGCTTTATTATCAACTTGGGCCTAAAGTACATTAAAACCTTAAGATCGACCTGTAAAGCAATTAAACTTCTGG
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045675 78 +  32716333 TTCTTTGCTTTATTATCAACTTGGGCCTAAAATACATTAAAACCTTAAGATCGACCTGTAAAGCAATTAAACTTCTGG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200221 78 - 198365852 TTCTTTGCTTTATTATCAACTTGGGCCTAAAATACATTAAAACCTTAAGATCGACTTGTAAAGCAATTAAACTTCTGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043364 78 - 192294377 TTCTTTGCTTTATTATCAACTTGGGCCTAAAATACATTAAAACCTTAAGATCGACTTGTAAAGCAATTAAACTTCTGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167423150 78 - 180432695 TTCTTTGCTTTATTATCAACTTGGGCCTAAAATACATTAAAACCTTAAGATCGACTTGTAAAGCAATTAAACTTCTGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31696622 78 -  90373283 TTCTTTGCTTTATTATCAACTTGGGCCTAAAATACATTAAAACCTTAAGATCGACTTGTAAAGCAATTAAACTTCTGG
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91623547 78 +  98207768 TCCTTTGCTTTATCATGACCTTGGGCTTGAAAGATGTTGAAACTGTAAGAGCACCCTGCAGGGCAGCCACAGCACTGG
i mm10.chr16                I 10 I 678
s canFam3.chr31              28138266 78 +  39895921 TTCTTTGCTTTACCATCAACTTGGGCCCAAAGTATATTGaaactttaacatagacttggaaagcaattacacttccag
i canFam3.chr31             C 0 C 0
e ponAbe2.chr21              34524244  0 +  48394510 C
e calJac3.chr21              37516111  0 +  50472720 C

a score=47432.000000
s hg38.chr21_GL383581v2_alt    113205 20 +    116689 GAATGAATCCTGAAGAAGTA
s panTro4.chr21              19616880 20 +  32799110 GAATGAATCCTGAAGAAATA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045753 20 +  32716333 GAATGAATCCTGAAGAAATA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200299 20 - 198365852 GAATGAATCCTGAAGAAATA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043442 20 - 192294377 GAATGAATCCTGAAGAAATA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167423228 20 - 180432695 GAATGAATCCTGAAGAAATA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31696700 20 -  90373283 GAATGAATCCTGAAGAAATA
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28138344 20 +  39895921 gaatatatcctaaaggaata
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91623625 678 +  98207768 I
e ponAbe2.chr21              34524244  0 +  48394510 C
e calJac3.chr21              37516111  0 +  50472720 C

a score=373865.000000
s hg38.chr21_GL383581v2_alt    113225 202 +    116689 TCAGAgctggttgtggtgctgcatgcctgcagtcccagctactcggggggctaataaggcggaaggattgcttgaggccagagctggaagctgcagtgtactatgactgcatctgtgaatagctactgtactctagcctgggcaacatagcaagactgtctcaaaaagaaTCACTATGATCTTGGCCATCAAAT-AAAAAAAA
s panTro4.chr21              19616900 202 +  32799110 TCAGAgctggttgtggtgctgcatgcctgcagtcccagctactcggggggctaataaggtggaaggattgcttgaggccagagctggaagctgcagtgtactatgactgcatctgtgaatagctactgtactctagcctgggcaacatagcaagactgtctcaaaaagaaTCATTATGATCTTGGCCATCAAAT-AAAAAAAA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045773 198 +  32716333 TCAGAgctgggtgtggtgctgcatgcctgcagtcccagctactcagggggctaataaggtggaaggattgcttgaggccagagctggaagctgcagtgtactatgactgcatctgtgaatagctactgtactctagcctgggcaacacagcaagactgtctcaaaaagaaTCATTATGATCTGGGCCATCAAAT-----AAAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200319 203 - 198365852 TCAGAgctgggtgtggtgctgcatgcctgcagtcccagctactcggcgagctaataaggtggaaggattgcttgaggccacagctggaagctgcagtgtactatgattgcatctgtgaatagctactgtactctagcctgggcaacatagcaagactgtctcaaaaagaaTCATGATGATCTTGGCCATCAAATTAAAAAAAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043462 203 - 192294377 TCAGAgctgggtgtggtgctgcatgcctgcagtcccagctactcggcgagctaataaggtggaaggattgcttgaggccacagctggaagctgcagtgtactatgattgcatctgtgaatagctactgtactctagcctgggcaacatagcaagactgtctcaaaaagaaTCATGATGATCTTGGCCATCAAATTAAAAAAAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167423248 203 - 180432695 tcagagctgggtgtggtgctgcatgcctgcagtcccagctactcggcgaGCTAAtaaggtagaaggattgcttgaggccacagCTGGAAGCTGCAGTGTACTATGATTGCATCTGTGAATagctactgtactctagcctgggcaacatagcaagactgtctcaaaaagaatcaTGATGATCTTGgccatcaaataaaaaaaaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31696720 203 -  90373283 TCAGAgctgggtgtggtgctgcatgcctgcactcccagctactcggcgagctaataaggtggaaggattgcttgaggccacagctggaagctgcagtgtactatgattgcatctgtaaatagctactgtactctagcctgggcaacatagcaagactgtctcaaaaagaaTCATGATGATCTTGGCTATCAAATAAAAAAAAA
i chlSab2.chr2              C 0 C 0
e mm10.chr16                 91623625 678 +  98207768 I
e canFam3.chr31              28138364   0 +  39895921 C
e ponAbe2.chr21              34524244   0 +  48394510 C
e calJac3.chr21              37516111   0 +  50472720 C

a score=363982.000000
s hg38.chr21_GL383581v2_alt    113427 179 +    116689 ATCACATATGCATTTAAGAACATACTGAATA-TTTGCAAGAATGTTCATAGCAGTGTTACTTACAATAGAGGGAAAAA-AATCAGGCTACATCCATC---TGAGAGAATACAATACTCTTATTACTTTACCCCTCTATCCATAAAGGTTAAACATAAACTTCTTCTAATTAATAAGATAACAAT
s panTro4.chr21              19617102 179 +  32799110 ATCACATATGCATTTAAGAACATACTGAATA-TTTGCAAGAATGTTCATAGCAGTGTTACTTACAATAGAGGGAAAAA-AATCAGGCTACATCCATC---TGAGAGAATACAATACTCTTATTACTTTACCCCTCTATCCATAAAGGTCAAACATAAACTTCTTCTTATTAATAAGATAACAAT
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20045971 179 +  32716333 ATCACATATGCATTTAAGAACATACTGAATA-TCTGCAAGAATGTTGATAGCAGTGTTACTTACAATAGAGGGAAAAA-AATCAGGCTACATCCATC---TGAGAGAATACAATACTCTTACTACTTTACCCCTCTATCCATAAAGGTCAAACATAAACTTCTTCTTATTAATAATATAACAAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200522 177 - 198365852 ATCAGATACGCATTTAAGAACATACTGAATA-TTTGCAAGAATGTTCATAGCAATGTTACTTACAATAGAGGGAAAAA-AATCAGGCTACATCCATC---TGAGAGAATACAATACTC--ATTACTTTACCCCTTTATCCATAAAGGTCAAACATAAACTACTACTTCTTAATAATATAACAAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043665 177 - 192294377 ATCAGATACGCATTTAAGAACATACTGAATA-TTTGCAAGAATGTTCATAGCAATGTTACTTACAATAGAGGGAAAAA-AATCAGGCTACATCCATC---TGAGAGAATACAATACTC--ATTACTTTACCCCTTTATCCATAAAGGTCAAACATAAACTACTTCTTCTTAATAATATAACAAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167423451 174 - 180432695 atcagatatgcatttaagAACATACTGAATA-TttgcaagaatgttcatagcaatgtTACTTacaatagagggaaaaa-aatcaggctACATCCATC---TGAGAGAATACAATACTC--ATTACTTTACCCCTTTATCCATAAAGGTCAAACATAA---ACTTCTTCTtaataatataacaat
i papAnu2.chr3              C 0 I 312
s chlSab2.chr2               31696923 174 -  90373283 ATCAGATATGCATTTAAGAACATACTGAATA-TTTGCAAGAATCTTCATAGCAATGTTACTTACAATAGAGGGAAAAA-AATCAGGCTACATCCATC---TGAGAGAATACAACACTC--ATTACTTTACCCCTTTATCCATAAAGGTCAAACATAA---ACTTCTTCTTAATAATATAACAAT
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28138364 176 +  39895921 atcagatatacacctagaaatgtactgcatattttacaaaaatgttcacaacaatgttacttacaatagtgggaaaaataaacaTGCTATCTCCATCTCTTAAGAGAATATGATGCTC---TTATTTTACCCCCCCATCCACAAGG--CAACCATAAATTTCATATTATTATTAAAAAAAC---
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91623625 678 +  98207768 I
e ponAbe2.chr21              34524244   0 +  48394510 C
e calJac3.chr21              37516111   0 +  50472720 C

a score=192667.000000
s hg38.chr21_GL383581v2_alt    113606 90 +    116689 AAAAATTCCTCAACTGTTTTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGTAGCTTCTA---------TCTTTTCTGGTTTC----TCTTTAA
s panTro4.chr21              19617281 90 +  32799110 AAAAATTCCTCAACTGTTTTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGGAGCTTCTA---------TCTTTTCTGGTTTC----TCTTTAA
i panTro4.chr21             C 0 C 0
s nomLeu3.chr25              20046150 90 +  32716333 AAAAATTCCTCAATTGTTCTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGGAACTTCTA---------TCTTTTCTGGTTTC----TCTTTAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200699 90 - 198365852 AAAAATTCCTCAACTGTTTTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGGAACTTCAA---------TCTTTTCTGGTTTC----TCTTTAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043842 90 - 192294377 AAAAATTCCTCAACTGTTTTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGGAACTTCAA---------TCTTTTCTGGTTTC----TCTTTAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167423937 90 - 180432695 aaaaattcctcaactGTTTTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGGAACTTCAA---------tcttttctggtttc----tctttAA
i papAnu2.chr3              I 312 C 0
s chlSab2.chr2               31697097 99 -  90373283 AAAAATTCCTCAACTGTTTTCAGACTTTTCAACAACAAAGCTATGATACAAAATGAGCTGGAACTTCTATCTTTTCTGTCTTTTCTGGTTTC----TCTTTAA
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28138540 86 +  39895921 -------CCTCAGCTGTTTTAAGACTTTTCAACTAGAAAGCTAGGATACAAA---AATTGGATTTTCTGTT-------TTTTTTCTGGTTTCTGTTTCTTCAA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91623625 678 +  98207768 I
e ponAbe2.chr21              34524244  0 +  48394510 C
e calJac3.chr21              37516111  0 +  50472720 C

a score=136683.000000
s hg38.chr21_GL383581v2_alt    113696 55 +    116689 CCAGCTTTCTGACATCCTTTACTTTTTTCTTTGGGAGCTGTCTC---AAATTCCTAAG
s panTro4.chr21              19617371 55 +  32799110 CCAGCTTTCTGACATCCTTTACTTTTTTCTTTGGGAGCTGTCTC---AAATTCCTAAG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524244 55 +  48394510 ccagcTTTCTGAAATCCTTTACTTTTTTCTTTGGGAGCTGTCTC---AAATTCCTAAG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046240 55 +  32716333 CCAGCTTTCTGACATCCTTTACTTTTTTCTTTGGGAGCTGTCTC---AAATTCCTAAG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200789 55 - 198365852 CCGGCTTTCTGAAATCCTCTACTTTTTTCTTTGGGAGCGGTCTC---AAATTCCTAAG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043932 55 - 192294377 CCGGCTTTCTGAAATCCTCTACTTTTTTCTTTGGGAGCGGTCTC---AAATTCCTAAG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424027 55 - 180432695 CCGGCTTTCTGAAATCCTCTACTTTTTTCTTTGGGAGCCGTCTC---AAATTCCTAAG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697196 55 -  90373283 CTGGCTTTCTGAAATCCTCTACTTTTTTCTTTGGGAGCGGTCTC---AAATTCCTAAG
i chlSab2.chr2              C 0 C 0
s canFam3.chr31              28138626 50 +  39895921 GTGTCTTCCTGATACCCTCT--TCTCTTCTTTAGG---TATCTCAGAAGACCCCC---
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91623625 678 +  98207768 I
e calJac3.chr21              37516111  0 +  50472720 C

a score=457555.000000
s hg38.chr21_GL383581v2_alt    113751 142 +    116689 AAAAGTGGAAAGACTAAGAATGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCCCCAGTCCCTAGACTCTGCCGAGAGTAACCTTACAATCTCACAAGAGTGCGGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
s panTro4.chr21              19617426 142 +  32799110 AAAAGTGGAAAGACTAAGAATGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCCCCAGTCCCTAGACTCTGCCGAGAGTGACCTTACAATCTCACAAGAGTGCGGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524299 141 +  48394510 AAAAGTGGAAAGACTAAGAATGCTG-AAAGACAAAGACAACCCTCA-TGATTCCCCCCAGTCCCTAGACTCTGCCGAGAGTATCCTTACAACCTCATAAGAGTGCGGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046295 142 +  32716333 AAAAGTGGAAAGACTAAGAATGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCCCCAGTCCCTGGACTCTGCCGAGAGTATCCTTACAATCTCATAAGAGTGCAGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200844 141 - 198365852 AAAAGTGGAAAGCCTAAGAATGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCTGCAGTCCCTAGACTCTGCCGAGAGTATCCTTACAATCTCA-AAAAGTGCAGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179043987 141 - 192294377 AAAAGTGGAAAGCCTAAGAATGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCTGCAGTCCCTAGACTCTGCCGAGAGTATCCTTATAATCTCA-AAAAGTGCAGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424082 141 - 180432695 AAAAGTGGAAAGCCTAAGAATGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCTGTAGTCCCTAGACTCTGCCTAGAGTATCCTTACAATCTCA-AAAAGtgcagggag------gaaaggaagggca-gTCAACAGCTCTACAGTGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697251 141 -  90373283 AAAAGTGGAAAGCCTAAGAAAGCTGAAAAGACAAAGACAACCCTCA-TGATTCCCTGCAGTCCCTAGACTCTGCCGAGAGTATCCTTACAATCTCA-AAAAGTGTAGGGAG------GAAAGGAAGGGCA-GTCAACAGCTCTACAGTGA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37516111 141 +  50472720 aaaaGTAGAAAGACTAAGAATGCTGAAAAGGCAAAGACAACCTTCA-TGATTCCCCCCAGCCCCCAGACTCTGCCAAGAGTACCCTTACAATCTGA-AAGAGTGCAGGGAG------GAGAGAAAGGGCA-TTCAACAGCTTTACAGTGA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28138676 136 +  39895921 AAAAGTAGAAAGACTGAGGACACAGAATA-------ACACTTCTTACTGACCCCCTG------CTCTGCTCTCCTGACGGTGTCCTCACAATCTGA-AGGAGGCTGGGGAGAAGGGAGAAGGAAAGGGCATTTCTACAGCCTCATAGTAA
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91623625 678 +  98207768 I

a score=1948520.000000
s hg38.chr21_GL383581v2_alt    113893 513 +    116689  
s panTro4.chr21              19617568 513 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524440 513 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046437 517 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185200985 516 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044128 517 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424223 513 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697392 513 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37516252 495 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91624303 496 +  98207768  
i mm10.chr16                I 678 C 0
s canFam3.chr31              28138812 415 +  39895921  
i canFam3.chr31             C 0 C 0

a score=102465.000000
s hg38.chr21_GL383581v2_alt    114406 34 +    116689 -ACCTAGCAAAGCCATTTAAAGGCTTGATATGCGA
s panTro4.chr21              19618081 34 +  32799110 -acccagcaaagccatttaaaggcttgatatgcga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524953 34 +  48394510 -ACCCAGCAAAGCCATTTAAAGGCTTGATATGTGA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046954 34 +  32716333 -ACCCAGCAAAGCCATTTAAAGGCTTGATATGCAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185201501 34 - 198365852 -ACCTAGCAAAACCATTTAAAGACTTGATATGGGA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044645 34 - 192294377 -ACCTAGCAAAACCATTTAAAGACTTGATATGGGA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424736 34 - 180432695 -ACCCAGCAAAACCATTTAAAGACTTGATATGGGA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697905 34 -  90373283 -ACCCAGCAAAACCATTTAAAGACTTGATATGGGA
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91624799 32 +  98207768 -ACCCAGCAAGGTCACTCAAGA--CTGACATAGGA
i mm10.chr16                C 0 C 0
s canFam3.chr31              28139227 35 +  39895921 ACCCAAGCGGGGCCATTCAAGGATTTGATACGAGA
i canFam3.chr31             C 0 I 17
e calJac3.chr21              37516747  0 +  50472720 C

a score=6876.000000
s hg38.chr21_GL383581v2_alt    114440 2 +    116689 TG
s panTro4.chr21              19618115 2 +  32799110 tg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524987 2 +  48394510 TG
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046988 2 +  32716333 TG
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185201535 2 - 198365852 TG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044679 2 - 192294377 TG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424770 2 - 180432695 TG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697939 2 -  90373283 TG
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91624831 2 +  98207768 TG
i mm10.chr16                C 0 C 0
e canFam3.chr31              28139262 17 +  39895921 I
e calJac3.chr21              37516747 0 +  50472720 C

a score=3090.000000
s hg38.chr21_GL383581v2_alt    114442 2 +    116689 TT
s panTro4.chr21              19618117 2 +  32799110 tt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524989 2 +  48394510 TT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046990 2 +  32716333 TT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185201537 2 - 198365852 TT
i rheMac3.chr3              C 0 I 1
s chlSab2.chr2               31697941 2 -  90373283 TT
i chlSab2.chr2              C 0 I 1
s mm10.chr16                 91624833 2 +  98207768 CT
i mm10.chr16                C 0 C 0
e canFam3.chr31              28139262 17 +  39895921 I
e calJac3.chr21              37516747 0 +  50472720 C
e papAnu2.chr3              167424772 0 - 180432695 C
e macFas5.chr3              179044681 0 - 192294377 C

a score=17492.000000
s hg38.chr21_GL383581v2_alt    114444 42 +    116689 AAGAAAAAGAGGGTCTCTCttttttt-tctttttgagatggag
s panTro4.chr21              19618119 43 +  32799110 aagaaaaagagggtctctctttttttctctttttgagacggag
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34524991 40 +  48394510 AAG--AAAGAAGGTCTCTCttttttt-tctttttgagacggag
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20046992 43 +  32716333 AAGAAAGAGAGGGTCTCTCtttttttttctttttgagacggag
i nomLeu3.chr25             C 0 C 0
s mm10.chr16                 91624835 14 +  98207768 -----------------------------GTTTTGAGAAGGGG
i mm10.chr16                C 0 C 0
e canFam3.chr31              28139262 17 +  39895921 I
e rheMac3.chr3              185201539  1 - 198365852 I
e calJac3.chr21              37516747  0 +  50472720 C
e chlSab2.chr2               31697943  1 -  90373283 I
e papAnu2.chr3              167424772  0 - 180432695 C
e macFas5.chr3              179044681  0 - 192294377 C

a score=89551.000000
s hg38.chr21_GL383581v2_alt    114486 161 +    116689 tctcgctctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagttccgcctcctaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaatgttttgtatttattagtaga
s panTro4.chr21              19618162 161 +  32799110 tctcgctctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagttccgcctcctaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaatgttttgtatttattagtaga
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525031 161 +  48394510 tcttgctctgttgcccaggctggagtgcagtggcccgatctcggctcactgcaagttccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaatgttttgtatttattagtaga
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20047035 161 +  32716333 tctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccgcctcccaggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccatgcccggctaatgttttgtatttattagtaga
i nomLeu3.chr25             C 0 C 0
e mm10.chr16                 91624849   0 +  98207768 C
e canFam3.chr31              28139262  17 +  39895921 I
e rheMac3.chr3              185201539   1 - 198365852 I
e calJac3.chr21              37516747   0 +  50472720 C
e chlSab2.chr2               31697943   1 -  90373283 I
e papAnu2.chr3              167424772   0 - 180432695 C
e macFas5.chr3              179044681   0 - 192294377 C

a score=49781.000000
s hg38.chr21_GL383581v2_alt    114647 112 +    116689 gacggggtttcactgagttagccaggatggtcttgatctcctgacctcgtgatccacccgcttcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggcT
s panTro4.chr21              19618323 112 +  32799110 gacggggtttcaccgagttagccaggatggtcttgatctcctgacctcgtgatccacccgcttcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525192 112 +  48394510 gacggggtttcaccgagttagccaggatggtcttgatctgctgacctcgtgatccacccgcttcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggcc
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20047196 112 +  32716333 gacggggtttcaccgagttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcgggctcccaaagtgctgggattacaggcatgagccaccgtgcccggcT
i nomLeu3.chr25             C 0 C 0
s mm10.chr16                 91624849  15 +  98207768 GATGGGGGT-------------------------------------------------------GGCTTC------------------------------------------
i mm10.chr16                C 0 C 0
e canFam3.chr31              28139262  17 +  39895921 I
e rheMac3.chr3              185201539   1 - 198365852 I
e calJac3.chr21              37516747   0 +  50472720 C
e chlSab2.chr2               31697943   1 -  90373283 I
e papAnu2.chr3              167424772   0 - 180432695 C
e macFas5.chr3              179044681   0 - 192294377 C

a score=8628.000000
s hg38.chr21_GL383581v2_alt    114759 10 +    116689 GGGTCTCTCT
s panTro4.chr21              19618435 10 +  32799110 gggtctctct
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525304 10 +  48394510 GGGTCTCTCT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20047308 10 +  32716333 GGGtctttct
i nomLeu3.chr25             C 0 C 0
s canFam3.chr31              28139279 10 +  39895921 GGGCCTCTCT
i canFam3.chr31             I 17 C 0
e mm10.chr16                 91624864  0 +  98207768 C
e rheMac3.chr3              185201539  1 - 198365852 I
e calJac3.chr21              37516747  0 +  50472720 C
e chlSab2.chr2               31697943  1 -  90373283 I
e papAnu2.chr3              167424772  0 - 180432695 C
e macFas5.chr3              179044681  0 - 192294377 C

a score=4323.000000
s hg38.chr21_GL383581v2_alt    114769 3 +    116689 TTC
s panTro4.chr21              19618445 3 +  32799110 ttc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525314 3 +  48394510 TTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20047318 3 +  32716333 ttt
i nomLeu3.chr25             C 0 C 0
s macFas5.chr3              179044681 3 - 192294377 TTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424772 3 - 180432695 TTT
i papAnu2.chr3              C 0 C 0
s canFam3.chr31              28139289 3 +  39895921 TTC
i canFam3.chr31             C 0 C 0
e mm10.chr16                 91624864 0 +  98207768 C
e rheMac3.chr3              185201539 1 - 198365852 I
e calJac3.chr21              37516747 0 +  50472720 C
e chlSab2.chr2               31697943 1 -  90373283 I

a score=15467.000000
s hg38.chr21_GL383581v2_alt    114772 5 +    116689 TTATT
s panTro4.chr21              19618448 5 +  32799110 ttatt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525317 5 +  48394510 TTATT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20047321 5 +  32716333 ttctt
i nomLeu3.chr25             C 0 I 415
s rheMac3.chr3              185201540 5 - 198365852 TTATT
i rheMac3.chr3              I 1 C 0
s macFas5.chr3              179044684 5 - 192294377 TTATT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424775 5 - 180432695 TTATT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697944 5 -  90373283 TTATT
i chlSab2.chr2              I 1 C 0
s mm10.chr16                 91624864 4 +  98207768 -TACT
i mm10.chr16                C 0 C 0
s canFam3.chr31              28139292 5 +  39895921 CTATT
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37516747 0 +  50472720 C

a score=59967.000000
s hg38.chr21_GL383581v2_alt    114777 21 +    116689 GTAATGTGAGCTGAAGGATGT
s panTro4.chr21              19618453 21 +  32799110 gtaatgtgagctgaaggatgt
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525322 21 +  48394510 GTAATGTGAGCTGAAGGATGT
i ponAbe2.chr21             C 0 C 0
s rheMac3.chr3              185201545 21 - 198365852 GTAATGTGAGCTGAAGCATGT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044689 21 - 192294377 GTAATGTGAGCTGAAGCATGT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424780 21 - 180432695 GTAATGTGAGCTGAAGGATGT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697949 21 -  90373283 GTAATGTGAGCTGAAGGATGT
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91624868 21 +  98207768 ACAGTGTAAGCTGAAGGATGT
i mm10.chr16                C 0 C 0
s canFam3.chr31              28139297 21 +  39895921 GCAACATGAGCTCAAGGATGT
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37516747  0 +  50472720 C
e nomLeu3.chr25              20047326 415 +  32716333 I

a score=129316.000000
s hg38.chr21_GL383581v2_alt    114798 41 +    116689 -------TATCTTTCCGGCATTTGGAGAACCCGCTTGAAAATGAATCC
s panTro4.chr21              19618474 41 +  32799110 -------tatctttccggcatttggagaacccgcttgaaaatgaatcc
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525343 41 +  48394510 -------TATCTTTCCGGCATTTGGAGAACCTGCTTGAAAATGAATCC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20047741 41 +  32716333 -------TATCTTTCTGGCATTTGGGGAACCTGCTTGAAAATGAATCC
i nomLeu3.chr25             I 415 I 300
s rheMac3.chr3              185201566 41 - 198365852 -------TATCTTTCTGGCATTTGGAGAACCTGCTTGAAAATGAATCC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044710 41 - 192294377 -------TATCTTTCTGGCATTTGGAGAACCTGCTTGAAAATGAATCC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424801 41 - 180432695 -------TATCTTTCCGGCATTTGGAGAACCCGCTTGAAAATGAATCC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31697970 41 -  90373283 -------TATCTTTCCGGCATTTGGAGAACCCGCTTGAAAATGAATCC
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91624889 40 +  98207768 -------TAT-TACGCAGCCCTGGGAGAACCTGCCTGTAAAGAAAACC
i mm10.chr16                C 0 C 0
s canFam3.chr31              28139318 48 +  39895921 GGACTCAAGACATCCTGGCATTTGGAGAACTGGCCTGAAAATGAAACC
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37516747  0 +  50472720 C

a score=175277.000000
s hg38.chr21_GL383581v2_alt    114839 76 +    116689 TACACAATAGAGGAAAGAAAGGCAGATACAGGTAAAGTCAACAAGGTCTGACAttttttttttctattttttattt
s panTro4.chr21              19618515 75 +  32799110 tacacaatagaggaaagaaaggcagaTACAGGTAAAGTCAACAGGGTCTGAC-TTTTTTTTTTCTATTTTTTATTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525384 76 +  48394510 TACACAATAGAGGAAAGAAAGGCAGATAGAGGTAAAGTCAACAAGGTCTGACATTTTTTTTTTCTATTTTTTATTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20048082 75 +  32716333 TACACAATAGAGGAAGGAAAGGCAGATAGAGGTAAAGTCAACAAAGTCTGAC-Atttttttttctattttttattt
i nomLeu3.chr25             I 300 C 0
s rheMac3.chr3              185201607 75 - 198365852 TACACAATAGAGGAAAGAAAGGCAGATATAGGTGAAGTCAACAAGGTCTGAC-TCTTTTTTTTCTGTTTTTTATTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044751 75 - 192294377 TACACAATAGAGGAAAGAAAGGCAGATATAGGTGAAGTCAACAAGGTCTGAC-TCTTTTTTTTCTGTTTTTTATTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424842 75 - 180432695 TACACAATAGAGGAAAGAAAGGCAGACATAGGTGAAGTCAACAAGgtctgac-tcttttttttctgttttttattt
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31698011 75 -  90373283 TACACAATAGAGGAAAGAAAGGCAGATATAGGTGAAGTCAACAAGGTCTGAC-Ctttttttttctgttttttattt
i chlSab2.chr2              C 0 C 0
s mm10.chr16                 91624929 44 +  98207768 TACACAGCATTGAGTAGATGGACAGACAGACAGAAGGTGTGCCA--------------------------------
i mm10.chr16                C 0 C 0
s canFam3.chr31              28139366 45 +  39895921 TATACAATAAAGGAACGAAAGGCAGACGCAGACATAATTGGCAAG-------------------------------
i canFam3.chr31             C 0 C 0
e calJac3.chr21              37516747  0 +  50472720 C

a score=821350.000000
s hg38.chr21_GL383581v2_alt    114915 242 +    116689 ttGTGaatcttctctgtatcgttccaattttagtatgtgtcctgccaaagcaagcaTGTGACGTCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTCGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGGTGCT-TGCTCGCTATTCCTTGAATCGAGCTGAGTgac--agcagagcc----atgaggtcttgtgtgtagggagattactttgggaagcgatccT
s panTro4.chr21              19618590 244 +  32799110 TTGTGaatcttctctgtatcgttccaattttagtatgtgtcctgccaaagcaagcaTGTGACGTCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTCGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGGTGCT-TGCTCGCTATTCCTTGAATTGAGCGGAGTGACaaagcagagcc----atgagatcttgtgtgtagggagattactttgggaagcgatccT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525460 244 +  48394510 TTGTGaatcttctctgtatcgtttcaattttagtatgtgtgctgccaaagcaagcaTGTGACATCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTCGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGGTGCT-TGCTCGCTATTCCTTGAATCGAGCTGAGTGACaaagcagagcc----atgaggtcttgtgtgtagggagattactttgggaagcgatccT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20048157 244 +  32716333 ttGTGaatcttctctgtattgttccaattttagtatgtgtgctgccaaagcaagcaTGTGACATCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGCTCTAGCACTTCTCGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGGTGCT-TGCTCGCTATTCCTTGAATCGAGCTGAGTGACaaagcagagcc----atgaggtcttgtgtgtagggagattactttgggaagcgatccT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185201682 240 - 198365852 TTGTGaatcttctctgtatcattccaattttagtatatgtgctgccgaagcgagcaTGTGACATCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTAGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGG-----TGCTCGCTATTCCTTGAACTGAGCTGAGTGACAAAGCAGAACC----ATGAGGTCTTGTGTGTGGGGAGATTACTTTGGGAAGTGATCCT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179044826 240 - 192294377 TTGTGaatcttctctgtatcattccaattttagtatatgtgctgccgaagcgagcaTGTGACATCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTAGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGG-----TGCTCGCTATTCCTTGAACTGAGCTGAGTGACaaagcagaacc----atgaggtcttgtgtgtggggagattactttgggaagtgatccT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167424917 240 - 180432695 ttgtgaatcttctctgtatcattccaattttagtatatgtgctgccgaagcgagcATGTGACATCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTAGCAGAGTCCTGACTG-ATCCAGTA--CTTGTCAGGG-----TGCTCGCTATTCCTTGAATTGAGCTGAGTGACAAAGCAGAACC----ATGAGGTCTTGTGTGTGGGGAGATTACTTTGGGAAGTGATCCT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31698086 239 -  90373283 ttGTGaatcttctctgtatcattccaattttagtatatgtgctgccgaagcaagcaTG-GACATCTTTGTTAGTGAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTAGCAGAGTCCTGACTG-ATACAGTA--CTTGTCAGGG-----TGCTCGCTATTCCTTGAATTGAGCTGAGTGACaaagcagaacc----atgaggtcttatgtgtggggagattactttgggaagtgatccT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37516747 244 +  50472720 TTGTGaatcttctatggatcatcccaattttaatatataagctgccaaagcgagcaTGTGACATCTTTGTTAGCAAATCTGAGTGGATT-TTCTGCCCCTCTGCCAAGTTCTAGCACTTCTAGCAGAGTCCTGACTG-ATACAGCA--CTTGTCAGGGTGCT-CGCTTGCTATTCCTTGAATTGAGATGAGTGACACTgcagagcc----acgaggtcttgtgtgcagggagattactttgggaagtgatccT
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91624973 163 +  98207768 ------------------------------------------------------------ACATCATTGTTAGCT-ATCTGAATGGCTCAGCCTGCCACCCTGTCAAATTCGGAT----------GAGTTCTGACCA-ACACAGAGACCTGGTCAGGGTGTT-CACTCACTAATGCTTGGGATGAGCTAAACCTCCAGGCAGACCC----ATGAGGCATTTTGTGTAG-----TAACTTT--------ATCCT
i mm10.chr16                C 0 C 0
s canFam3.chr31              28139411 186 +  39895921 -----------------------CCA----------------------------------GCATCTCTGTTCACTAATTTGA--------GTTAGCCACGCTGCTAACTTCTAGTACTTCTAACAGAGTCCTAAGTATACACAGCA--CTTGTCAGGGTGCTCCCTTCACTACTCCCTGAATTGAGCTGAATTACaaagtagagtctgagaccaggtcctgctcataggaagatgactctgggaagtgatcct
i canFam3.chr31             C 0 I 202

a score=2767295.000000
s hg38.chr21_GL383581v2_alt    115157 741 +    116689  
s panTro4.chr21              19618834 737 +  32799110  
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34525704 743 +  48394510  
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20048401 743 +  32716333  
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185201922 741 - 198365852  
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179045066 741 - 192294377  
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167425157 741 - 180432695  
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31698325 738 -  90373283  
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37516991 725 +  50472720  
i calJac3.chr21             C 0 C 0
s mm10.chr16                 91625136 583 +  98207768  
i mm10.chr16                C 0 N 0
s canFam3.chr31              28139799 727 +  39895921  
i canFam3.chr31             I 202 C 0

a score=54167.000000
s hg38.chr21_GL383581v2_alt    115898 17 +    116689 CAGTATACCATCCTTTT
s panTro4.chr21              19619571 17 +  32799110 CAGTATACCATCCTTTT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526447 17 +  48394510 CAGTATACCATCCTTTT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049144 17 +  32716333 CAGTATACCATCCTTTT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202663 17 - 198365852 CAGTATACCATCCTTTT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179045807 17 - 192294377 CAGTATACCATCCTTTT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167425898 17 - 180432695 CAGTATACCATCCTTTT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699063 17 -  90373283 CAGTATACCATCCTCTT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37517716 17 +  50472720 CAGTATACTATCCtttt
i calJac3.chr21             C 0 I 288
s canFam3.chr31              28140526  3 +  39895921 --------------TTT
i canFam3.chr31             C 0 C 0

a score=351331.000000
s hg38.chr21_GL383581v2_alt    115915 100 +    116689 GTGAATGTTTGGCTGAGTCTTTGTGATGACCAAAATGCACCCAAAGTACAATGCAAAACTAGATGGCTTAT-CTACATATTTAGAGAAAATGCATACACTC
s panTro4.chr21              19619588 100 +  32799110 GTGAATGTTTGGCTGAGTCTTTGCGATGACCAAAATGCACCCAAAGTACAATGCAAAACTAGATGGCTTAT-CTACATATTTAGAGAAAATGCATACACTC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526464 100 +  48394510 GTGAATGTTTGACGGAGTCTTTGCGATGACCAAAATGCACCCAAAGTACAATGCAAAACTGGATGGCTTAT-CTACATATTTAGAGAAAATGCATACACTC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049161 100 +  32716333 GTGAATGTTTGGCTGAGTCTTTGCGATGACCAAAATGCACCCGAAGTACAATGCAAAACTAGATGGCTTAT-CTACATATTTAGAGAAAATGCATACACTC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202680 100 - 198365852 GCGAATGTTTGGCTGAGTCTTTGCGATGACCAAAATGCACCCAAAGTACAATGCAAAACTAGATGGCTTGT-CTACTTATTTAGAGAAAATGCATACACTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179045824 100 - 192294377 GCGAATGTTTGGCTGAGTCTTTGCGATGACCAAAATGCACCCAAAGTACAATGCAAAACTAGATGGCTTGT-CTACTTATTTAGAGAAAATGCATACACTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167425915 100 - 180432695 GCGAATGTTTGGCTGAGTCTTTGCGATGACCAAAATGCACCCAAAGTACAATGCAAAACTAGATGGCTTGT-CTACTTATTTAGAGAAAATGCATATACTA
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699080 100 -  90373283 GTGAATGTTTGGCTGAGTCTTTGCGATAACCAAAATGCACCCAAAGTACAATGCAAAACTAGATGGCTTGT-CTACTTATTTAGAGAAAATGCATACACTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37518021 100 +  50472720 GTGAATGTTTGGCTGGGTCTTCCCAATGACCAAAATGCACCCAAAGTACAATGCAAAACTAGATAGCTTAT-CTGCATGTTTGGAGAAAATGCATACATCA
i calJac3.chr21             I 288 I 253
s canFam3.chr31              28140529 100 +  39895921 GAGAATGTTAAGCTGGGTCTTAGCAATAA-CAAAATGCACTCTAGGTGTGATGCAAAACTAGGTGGCTTATGTTACAGACTTAAAGGAAACGTATCCACTA
i canFam3.chr31             C 0 C 0

a score=85698.000000
s hg38.chr21_GL383581v2_alt    116015 28 +    116689 CTCAAGAAAAGTTATGT---TAATGGAAGGC
s panTro4.chr21              19619688 28 +  32799110 CTCAAGAAAAGTTATGT---TAATGGAAGGC
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526564 28 +  48394510 CTCAAGAAAAGTTATGT---TAATGGAAGGC
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049261 28 +  32716333 CTCAAGAAAAGTTATGT---TAATGGAAGGC
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202780 28 - 198365852 CTCAGGAAAAGTTATGC---TAATGGAATGC
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179045924 28 - 192294377 CTCAGGAAAAGTTATGC---TAATGGAATGC
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426015 28 - 180432695 CTCAGGAAAAGTCATGC---TAATGGAATGC
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699180 28 -  90373283 CTCAGGAAAAGTTATGC---TAATGGAATGC
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37518374 28 +  50472720 ctcaaaaaaaGGTATGC---TAATGGAAGGT
i calJac3.chr21             I 253 C 0
s canFam3.chr31              28140629 31 +  39895921 TTTTAAAAAAGTCATACAATTTATAAAAGGT
i canFam3.chr31             C 0 I 145

a score=183848.000000
s hg38.chr21_GL383581v2_alt    116043 58 +    116689 GGATCAACACCCTCTCCCTCTCATTCTTTTTAAAATTTAGACTTCCTAGGTCTGCTAT
s panTro4.chr21              19619716 58 +  32799110 GGATCAACACCCTCTCCCTCTCATTCTTTTTAAAATTTAGACTTCCTAGGTCTGCTAT
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526592 58 +  48394510 AGATCAACACCCTCTCCCTCTCATTCGTTTTAAAATTTAGACTTCCTAGGTCTGATGT
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049289 58 +  32716333 AGATCAACACCCTTTCCCTCTCATTCGTTTTAAAATTTAGACTTCCTAGGTCTGCTAT
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202808 58 - 198365852 AGATCAACACCCTCTCCCTCTCATTCATTTTAAAATTTAGACTTCCTAGGTCTGCTAT
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179045952 58 - 192294377 AGATCAACACCCTCTCCCTCTCATTCATTTTAAAATTTAGACTTCCTAGGTCTGCTAT
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426043 58 - 180432695 AGATCAACACCCTCTCCCTctcactcattttaaaatttagacttCCTAGGTCTGCTAT
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699208 58 -  90373283 AGATCAACACCCTCTCCCTCTCATTCATTTTAAAATTTAGACTTCCTAGATCTGCTAT
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37518402 58 +  50472720 AGATCAACACCCTGTCCCTCTCATTCATTTTAAAATTTAGACTTCCTAGGTCTGCTAT
i calJac3.chr21             C 0 I 312
e canFam3.chr31              28140660 145 +  39895921 I

a score=60188.000000
s hg38.chr21_GL383581v2_alt    116101 18 +    116689 AAGAATACATTCTCTCGG
s panTro4.chr21              19619774 18 +  32799110 AAGAATACATTCTCTCGG
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526650 18 +  48394510 AAGAATACATTCTCTCgg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049347 18 +  32716333 AAGAATACATTCTCTCgg
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202866 18 - 198365852 AAGAATACATTCTCTCGG
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179046010 18 - 192294377 AAGAATACATTCTCTCGG
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426101 18 - 180432695 AAGAATACATTCTCTCGG
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699266 18 -  90373283 AAGAATACATTCTCTCGG
i chlSab2.chr2              C 0 I 12
s calJac3.chr21              37518772 18 +  50472720 AAGAATACATTCTCTTgg
i calJac3.chr21             I 312 C 0
e canFam3.chr31              28140660 145 +  39895921 I

a score=7973.000000
s hg38.chr21_GL383581v2_alt    116119 29 +    116689 CCGGGCGTGAGAATCCCAACACTTTGGAT--
s panTro4.chr21              19619792 29 +  32799110 CCGGGCGTGAGAATCCCAACACTTTGGAT--
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526668 13 +  48394510 ccgggcgtgg-------------ttg-----
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049365 13 +  32716333 ccgggcgtgg-------------ttg-----
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202884 12 - 198365852 -Tgggcgcga-------------ttg-----
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179046028 12 - 192294377 -Tgggcgcga-------------ttg-----
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426119 12 - 180432695 -TGGGCGcga-------------ttg-----
i papAnu2.chr3              C 0 C 0
s calJac3.chr21              37518790 15 +  50472720 ctgggtgtgg-------------tgg---ct
i calJac3.chr21             C 0 C 0
e canFam3.chr31              28140660 145 +  39895921 I
e chlSab2.chr2               31699284 12 -  90373283 I

a score=409139.000000
s hg38.chr21_GL383581v2_alt    116148 159 +    116689 TAcatgcctgtaatcccaacactttgagaggctgaggtgggcggatcacgaggtcaggagatcgagaccaccctggccaagatggtgaaacccattctctactaaaaatacaataattagctgggcgtggtggcgcacacctgtagtcccagctactcg
s panTro4.chr21              19619821 159 +  32799110 TAcatgcctgtaatcccaacactttgggaggccgaggtgggcggatcacgaggtcaggaaatcgagaccaccctggccaagatggtgaaacccattctctactaaaaatacaataattagctgggcgtggtggcgcacgcctgtagtcccagctactcg
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526681 159 +  48394510 ctcatgcctgtaatcccaacactttaggaggccgaggtaggcggatcacgaggtcaggagagccagaccatcctggccaagatggtgaaaccccttctctactaaaaatacaataattagctgggcgtggtggcgcatgcctggagtcccagctactcg
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049378 159 +  32716333 ctcgtgcctgtaatcccaacacttcgggaggccaaggtgggtggatcacgaggtcaggagatcgagaccatcctggccaagatggtgaaaccccttctctactaaaaatacaataattagctgggcgtggtggcgcatgcctgtagtcccagctactca
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185202896 151 - 198365852 ctcatgcctgtaattccaacactttgggaggccaaggcaagcggatcacatggtcaggagattgagaccatcctggacaacatagtgaaataccttctccactaaaaatacaataattagcca--------ggcgcgtgcctgtagtaccagctactag
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179046040 151 - 192294377 ctcatgcctgtaattccaacactttgggaggccaaggcaagcggatcacatggtcaggagattgagaccatcctggacaacatagtgaaataccttctccactaaaaatacaataattagcca--------ggcgcgtgcctgtagtaccagctactag
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426131 151 - 180432695 ctcatgcctgtaattccaacactttgggaggccaaggcaagcggatcacatggtcaggagattgagaccatcctggacaacatagtgaaataccttctctactaaaaatacaataattagcca--------ggcgcgtgcctgtagtaccagctactcg
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699296 151 -  90373283 ctcatgcctgtaatcccaacactttgggaggccaaggcaagcggatcacatggtcaggagattgagaccatcctggacaacatagtgaaacaccttctctactaaaaatacaataattagccg--------ggcgcgtgcctgtagtaccagctacttg
i chlSab2.chr2              I 12 C 0
s calJac3.chr21              37518805 157 +  50472720 --tatacttataattccagcactttggtaggccaaggcaggaggatcacgaagtcaagagattgagaccatcccggccaacatggtgaaaccctatctctactgaaaatacaaaaattagctcggcatggtggcgcaggcctacagtcccagctactcg
i calJac3.chr21             C 0 C 0
e canFam3.chr31              28140660 145 +  39895921 I

a score=180132.000000
s hg38.chr21_GL383581v2_alt    116307 60 +    116689 ggaggctgaggcaggagaatcacttaaacctgggaggtggaggttgcag--tgggccgagat
s panTro4.chr21              19619980 60 +  32799110 ggaggctgaggcagcagaatcacttaaacctgggaggtggaggttgcag--tgggccgagat
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526840 60 +  48394510 ggaggctgaggcaggagaatcgcttaaacctgggaggtggaggttgcag--tgggccgagat
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049537 60 +  32716333 ggaggctgaggcaggagaatcactgaaacctgggaggtggaggttgcag--tgggccaagat
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185203047 59 - 198365852 ggaggctgagacaggagaatcgcttaaacc-tggaggtggaggttgcag--tgagccgagat
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179046191 59 - 192294377 ggaggctgagacaggagaatcgcttaaacc-tggaggtggaggttgcag--tgagccgagat
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426282 60 - 180432695 ggaggctgagacaggagaatcgcttaaaccggggaggtggaggttgcag--tgagccgagat
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699447 60 -  90373283 ggaggccgagacaggagaatcgcttaaacctgggaggtggaggttgcag--tgagccaagat
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37518962 59 +  50472720 ggaaactgaggcagaagaatcacttgaacc-aggaggcagaggttacag--tgagccaagat
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28140805 55 +  39895921 ggagcccaaaacagg------gcttaatcctaggccgt-gagatcacaacctaagccaaaat
i canFam3.chr31             I 145 I 76

a score=169359.000000
s hg38.chr21_GL383581v2_alt    116367  97 +    116689 ggtaccactgcactctagcctggtggacagagtgagactccgactcaaattg-aaaaaa------aaaaaaaaaaaaaaaagaaTACATTCTCTCTTATCACAA
s panTro4.chr21              19620040  98 +  32799110 ggtaccactgcactctagcctggtggacagagtgagactccgattcaaattgaaaaaaa------aaaaaaaaaaaaaaaaaaaaaaaTTCTCTCTTATCACAA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526900  94 +  48394510 ggtaccactgcactccagcctggtggacagagtgagacttcgactcaaatta----aaa------aaaaaaaaaaaaaaaagaaTACATTCTCTCTTATCACAA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049597  73 +  32716333 ggtaccactgcactccagcctg-----------gagactccgactcacatta----aaa------aaaaaaaaaaaa----------aTTCTCTCTTATCACAA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185203106  96 - 198365852 ggcgccactgcactccagcctggt-gacagagcgaaattccaaatc-aaaaaaaaaaaa------aaaagaaaaagaaaaaGAGTACATTCTCTCTTATCACAA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179046250  97 - 192294377 ggcgccactgcactccagcctggt-gacagagcgaaattccaactcaaaaaaaaaaaaa------aaaagaaaaagaaaaaGAGTACATTCTCTCTTATCACAA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426342  76 - 180432695 ggcgccactgcactccagcct------------aaaa----------aaaaaaaaaaga------aaaagaaaaagaaaaagagtacatTCTCTCTTATCAcaa
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699507 103 -  90373283 ggcaccactgcactccagcctggt-gacagagcgaaattccaactcaaaaaaaaaaaaaaaatagaaaagaaaaaGAAAAAGAGTACATTCTCTCTTATCACAA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37519021  73 +  50472720 tgcgccaccgcactccagcctggc-aacagagtgacactctatctt----------aaa------aaaaaaaa--------------aTTCTCTCTGGTCACAA
i calJac3.chr21             C 0 C 0
e canFam3.chr31              28140860  76 +  39895921 I

a score=637466.000000
s hg38.chr21_GL383581v2_alt    116464 200 +    116689 ATAATACAACAAAAATCTCTAATAAAAATTTT-TAGGTAAAGGTCTATATACACACACACAACATTTCTGAATTTAAAA-AGAATCTGGATAGTTCTTTGGAATCTACGA-TTATGGGATCTGATTTTT-TAAAAAAACTATACTGAATTAAATTATTTATGATGCTCTTAAGAAAGGGAAGCCAATGTGAACTCAGCTTTTTA
s panTro4.chr21              19620138 200 +  32799110 ATAATACAACAAAAATCTCTAATAAAAATTTT-TCGGTAAAGGTCTATATACACACACACAACATTTCTGAATTTAAAA-AGAATCTGGATAGTTCTTTGGAATCTACGA-TTATGGGATCTGATTTTT-TAAAAAAACTATACTGAATTAAATTATTTATGATGCTCTTAAGAAAGGGAAGCCAATGTGAACTCAGCTTTTTA
i panTro4.chr21             C 0 C 0
s ponAbe2.chr21              34526994 199 +  48394510 ATAATACAACAAAAATCTCTAATAAAAATTTT-TCGGT-AAGGCCTATATACACACACACAACATTTCTGAATTTAAAA-AGAATCTGGATAGTTCTTTGGAATCTACGA-TTATGGGATCTGattttt-tttaaaaactatattgaattaaattatttatGATGCTCTTAAGAAAGGGAAGCCAATGTGAACTTAGCTTTTTA
i ponAbe2.chr21             C 0 C 0
s nomLeu3.chr25              20049670 197 +  32716333 ATAATACAACAAAAATCTCTAATAAAAATTTT-TAGGTAAAGGCCTATATACACACAC---ACATTTCTGAATTTAAAA-AGAATCTGGATAGTTCTTTGGAATCTACGA-TTATGGGATCTGATTTTT-TTAAAAAACTATACTGAATTAAATTATTTATGATGCTCTTAAGAAGGGGAAGCCAATGTGAACTTAGCTTTTTA
i nomLeu3.chr25             C 0 C 0
s rheMac3.chr3              185203202 201 - 198365852 ATAATACAACAAAAATCTCTAATAAAAATTTT-TAGGTAAAGGCCTATATACACACACACAACATTTCTGAATTTAAAACAGAATCTGGATAGTTCTTCGGGATCTATGA-TTATGGGATCTGATTTTT-AAAAAAAACTATACCAAATTAAATTATTTATGATGCTCTTAAGAAAGGGAAGCCAATGTGAACTTAGCTTTTTA
i rheMac3.chr3              C 0 C 0
s macFas5.chr3              179046347 201 - 192294377 ATAATACAACAAAAATCTCTAATAAAAATTTT-TAGGTAAAGGCCTATATACACACACACAACATTTCTGAATTTAAAACAGAATCTGGATAGTTCTTCGGGATCTATGA-TTATGGGATCTGATTTTT-AAAAAAAACTATACCAAATTAAATTATTTATGATGCTCTTAAGAAAGGGAAGCCAATGTGAACTTAGCTTTTTA
i macFas5.chr3              C 0 C 0
s papAnu2.chr3              167426418 201 - 180432695 ataatacaacaaaaatctctaataaaaatttt-taggTAAAggcctatatacacacacacaacatttctgaatttaaaa-agaatctgGATAGTTCTTCGGGATCTATGA-TTATGggatctgatttttaaaaaaaaactataccaaattaaattatttatgatGCTCTTAAGAAAGGGAAGCCAATGTGAACTTagcttttta
i papAnu2.chr3              C 0 C 0
s chlSab2.chr2               31699610 200 -  90373283 ATAATACAACAAAAATCTCTAATAAAAATTTT-TAGGTAAAGGCCTATATACACACACACAACATTTCTGAATTTAAAA-AGAATCTGGATAGTTCTTTGGGATCTATGA-TTATGGGATCTGATTTTT-AAAAAAAACTATACCAAATTAAATTATATATGATGCTCTTAAGAAAGGGAAGCCAATGTGAACTTAGCTTTTTA
i chlSab2.chr2              C 0 C 0
s calJac3.chr21              37519094 194 +  50472720 ATAATGCAACAAAAATCTCTAATAAAGATTTT-TAGGTAAAGGCCTATATACACACG----AAATTCCTGAATAATAAA-AGAATGTGGATAGTTCTTTGTAATCTACAA-TTATGGGATCTGATTTTT-TTTTTAAA--ATACTGAAATAAACTATTTATGATGCTCTAAGGAAAGGGAAGCCAATATGAATTTAGCCTTTTA
i calJac3.chr21             C 0 C 0
s canFam3.chr31              28140936 174 +  39895921 ATAATACAACCAAAAACTTTAATAAAATTTTTAAAGGTAAAGGCATAAACACA-ACAC---ACATTTAT--------------ACTTGGATAGTTCTTTGGAATCTATAAGTTACGGGATCTGAATTGG-AAAAT-----------AATTAAATATTTACTTATGCTCATAAAATAGGGAAGCCACTGTGAACCTAGattttta
i canFam3.chr31             I 76 N 0

a score=76510.000000
s hg38.chr21_GL383581v2_alt    116664 25 +    116689 TTAAATAATAAGGTTTACTATCAGT
s panTro4.chr21              19620338 25 +  32799110 TTAAATAATAAGGTTTACTATCAGT
i panTro4.chr21             C 0 N 0
s ponAbe2.chr21              34527193 25 +  48394510 TTAAATAATAAGGTTTACTATCAGT
i ponAbe2.chr21             C 0 N 0
s nomLeu3.chr25              20049867 25 +  32716333 TTAAATAATAAGGTTTACTATCAGT
i nomLeu3.chr25             C 0 N 0
s rheMac3.chr3              185203403 25 - 198365852 TTAAATAATAAGGTTTACGATCAGT
i rheMac3.chr3              C 0 N 0
s macFas5.chr3              179046548 25 - 192294377 TTAAATAATAAGGTTTACGATCAGT
i macFas5.chr3              C 0 N 0
s papAnu2.chr3              167426619 25 - 180432695 ttaaataataaggtTTACGATCAGT
i papAnu2.chr3              C 0 N 0
s chlSab2.chr2               31699810 25 -  90373283 TTAAATAGTAAGGTTTACGATCAGT
i chlSab2.chr2              C 0 N 0
s calJac3.chr21              37519288 25 +  50472720 TTAAATAATAAGGCTTATGATCAGT
i calJac3.chr21             C 0 N 0

