##maf version=1 scoring=roast.v3.3
a score=3276.000000
s hg38.chr22_GL383582v2_alt         0 1 +    162811 T
s panTro4.chr22              40809143 1 +  49737984 T
i panTro4.chr22             N 0 C 0
s ponAbe2.chr22              37351625 1 +  46535552 T
i ponAbe2.chr22             N 0 C 0
s nomLeu3.chr7b             106560076 1 - 115148730 T
i nomLeu3.chr7b             N 0 C 0
s rheMac3.chr10              86872992 1 +  95678458 T
i rheMac3.chr10             N 0 C 0
s macFas5.chr10              87527512 1 -  96509753 T
i macFas5.chr10             N 0 C 0
s papAnu2.chr10              82356638 1 +  90941950 T
i papAnu2.chr10             N 0 C 0
s chlSab2.chr19              24614553 1 +  33263144 T
i chlSab2.chr19             N 0 C 0
s calJac3.chrUn_GL286373      1869862 1 -   2117846 T
i calJac3.chrUn_GL286373    N 0 C 0

a score=4807560.000000
s hg38.chr22_GL383582v2_alt         1 1411 +    162811  
s panTro4.chr22              40809144 1407 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37351626 1411 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106560077 1398 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86872993 1414 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87527513 1404 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82356639 1408 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24614554 1408 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1869863 1448 -   2117846  
i calJac3.chrUn_GL286373    C 0 I 339
s canFam3.chr10              46032145 1387 -  69331447  
i canFam3.chr10             N 0 C 0

a score=2217.000000
s hg38.chr22_GL383582v2_alt      1412  5 +    162811 -------AAGTC---------
s panTro4.chr22              40810551  5 +  49737984 -------AAGTC---------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37353037  5 +  46535552 -------ACATC---------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106561475  5 - 115148730 -------ATATC---------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86874407  5 +  95678458 -------ACATC---------
i rheMac3.chr10             C 0 I 23
s macFas5.chr10              87528917  5 -  96509753 -------ACATC---------
i macFas5.chr10             C 0 I 23
s papAnu2.chr10              82358047  5 +  90941950 -------ACATC---------
i papAnu2.chr10             C 0 I 23
s chlSab2.chr19              24615962  5 +  33263144 -------ACATC---------
i chlSab2.chr19             C 0 I 23
s canFam3.chr10              46033532 21 -  69331447 AAGTGTTTTATCGATGGTTTA
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1871311 339 -   2117846 I

a score=1140134.000000
s hg38.chr22_GL383582v2_alt      1417 403 +    162811 GGGAGGCAAAGCGGCTGGGT------CACCAG-AGCCTGACCATACTGACGCTCCAGGG---------------------GGAAGACGCAGAGGCCGGGAAGAGACAC------------------CCCCTCCCAAACACATAAAACTTGCCCCTTCCTAGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-AGAGGCGGAGATGCGCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACACAGATAGCACGGGCCTTTC--TCTTATTGCTACAGTGTTTT-GTACACGGTTAAAACACTAGTAAAGCTTTTTCGTTATTACTCCTTCCGCTCCCTGGGTTTATTTCCACAACCGGCC
s panTro4.chr22              40810556 403 +  49737984 GGGAGGCAAAGCGGCTGGGT------CACCAG-AGCCTGACCATACTGACGCTCCAGGG---------------------GGAAGACGCAGAGGCCGGGAAGAGACAC------------------CCCCTCCCAAACACATAAAACTTGCCCCTTCCTAGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-AGAGGCGGAGATGCGCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACACAGATAGCACGGGCCTTTC--TCTTATTGCTACAGTGTTTT-GTACACGGTTAAAACACTAGTAAAGCTTTTTCGTTATTACTCCTTCCGCTCCCTGGGTTTATTTCCACAACCGGCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37353042 399 +  46535552 GGGAGGCAAAGCGGCTGGGT------CACCAG-AGCCTGACCAT----ACGCCCCAGGG---------------------GTAAGACGCAGAGGCCGGGAAGAGACAC------------------CCCCTCCCAAACACAGAAAACTTGCCCCTTCCTAGCCTCGGCTCCCCTGACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGGCTCTGAGCCT-----CTTACCC---CTA-GGAGGCGGAGATGCGCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACACAGATAGCACGGGCCTTTC--TCTTATTGCTACAGTGTTTT-GTACACGGTTAAAACACTAGTAAAGCTTTTTCGTTATTACTCCTTCGGCTCCCTGGGTTTATTTCCACAGCCGGCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106561480 386 - 115148730 GGGAGGCAAAGCAGCTGGGT------AACCAG-AGCCTGACCGTACTGACGCCCCAGGG---------------------GGAAGACGC-------------AGACAC------------------CCGCTCCCAAACACATATATCTTGCCCCTTCCTAGCCTTGGCTCCCCTCACTGGGGCCTTGGGCAGGACCGACCCGCATCCAACTAGGCCTAAGGG----GTAGACTCTGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGCGCCCAAGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCCCCGCA-----GCCACTGCATTTTGTTT-AAACAC----AGCACGGGCCTTTT--TCTTATTGCTACAGTGTTTT-GTACACGGTTAAAACACTAGTAAAGCTTTTTCGTTATTACTCCTTCGGCTCCCTGGGTTTATTTCCACAGCCGGCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86874435 390 +  95678458 GGGAGGCAAAGCGGCTGGGT------CACCAG-AGCCTAACCAGACTGACGCCCCAGGG---------------------GGAAGACGCAGAGGCCGGGAGGAGACAC------------------CCCCTCCCAAACACACAAAACTTGCCTCTTCCTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGGCGGAGATGCGCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCTTC--TCTTATTACTACAGTGTTTT-GTACGCGGTTAAAACACTAGTAAAGCTTTTTCATTATTACTCATTCGTCTCCCTGGGTTTATTTCTACAGCCGGCC
i rheMac3.chr10             I 23 I 237
s macFas5.chr10              87528945 391 -  96509753 GGGAGGCAAAGCGGCTGGGT------CACCAG-AGCCTAACCAGACTGACGCCCCAGGG---------------------GGAAGACGCAGAGGCCGGGAGGAGACAC------------------CCCCTCCCAAACACACAAAACTTGCCTCTTCCTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCAGGGAGGCGGAGATGCGCCCAGGGCGGGCGCCCGGCCTGTTCCCCAGCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCTTC--TCTTATTACTACAGTGTTTT-GTACGCGGTTAAAACACTAGTAAAGCTTTTTCATTATTACTCATTCGTCTCCCTGGGTTTATTTCTACAGCCGGCC
i macFas5.chr10             I 23 C 0
s papAnu2.chr10              82358075 390 +  90941950 GGGAAGCAAAGCGGCTGTGT------CACCAG-AGCCTAACCAGACTGACGCCCCAGGG---------------------GGAAGACGCAGAGGCCGGGAGGAGACAC------------------CCCCTCCCAAACACACAAAACTTGCCCCTTCCTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTaccc---cca-ggaggcggagatgcGCCCAGGGCGGGCGCCCGGCCTgttccccagccctgcctggaAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCTTC--TCTTATTGCTACAGTGTTTT-GTACGCGGTTAAAACACTAGTAAAGCTTTTTCATTATTACTCATTCGTCTCCCTGGGTTTATTTCCACAGCCGGCC
i papAnu2.chr10             I 23 C 0
s chlSab2.chr19              24615990 390 +  33263144 GGGAGGCAAAGCGGCTGGGT------AACCAG-AGCCTAACCAGACTGACGCCCCAGGG---------------------AGAAGACGCAGAGGCCGGGAGGAGACAC------------------CCCCTCCCAAACACACAAAACTTGCCCCTTCCTGGCCTCGGCTCCCCTCACTGGGGCCTTGGGCAGGGCTGACCCGCACCCAACTAGGCCTAAGGG----GGACGCTCGGAGCCT-----CTTACCC---CCA-GGAGACGGAGATGCGCCCAGGGCGGGCGCCCGGACTGTTCCCCACCCCTGCCTGGAAGCTCCGCA-----GCCACTGCATTTTGTTG--------------ACGGGCCCTTC--TCTTATTCCTACAGTGTTTT-GTACGCGGTTAAAACACTAGTAAAGCTTTTTCATTATTACTCATTCGTCTCCCTGGGTTTATTTCCACAGCCGGCC
i chlSab2.chr19             I 23 C 0
s calJac3.chrUn_GL286373      1871650 412 -   2117846 GGGAAGCAAAGT-GCTGGGT------CACCAG-AGTCTGACCAGACTGACGCCTTAGGGGTGCGATGGCAGAGGCTGGGCGGAAGCCGCAGAGCCCCAGAGGAGACAC------------------CCCCTCCCCCCCACACAAAACCTACC-CTCCCTAGCCTCCGCTACCCTCACTGGGGCCTTGGGCAGCACCGACCGGCACCCAACTAGGCCTTAGGC----AGAGGCTCACAGCCT---------CCC---CCA-GGAGCCTGAGATGCACCCAGGGTGGGCGCCCGGCCTGTTCCCTAGCCCTGCCTGGGAGCCCCGCA-----GCCGCTGCACTTTGTTTTATACACAGACAGCACGGGCCTTTCTTTCTTATTGC-----TGCTTG-GTACGCGGTTAAAACACTAGTAAAGCTTTTTCATTATTATTCATTCGGCTCCCTAGGTTTCTTTCCACAGCC----
i calJac3.chrUn_GL286373    I 339 C 0
s canFam3.chr10              46033553 404 -  69331447 GGGTGTCGGCGTGTCTGGGTGGAGAGAGCCAGCAGCCAGCCCAGCCTGA-GCCCTTGGG---------------------TGTGGCCGCCGTGGCCGGTCGGGGATGCAGAGCCTGGGCCGACGGGCCCCTCTC-----CACACACCCAGTCGGCCCCGAGCCTCTCCGTCCCCTCTTAGCAGCTTGGGTA-CACGGCCCCGGGCCGGACCGGGTCTGGAGGCTTCGCGGGCCCAGGACCCCGAGGCTGACCCAGTCCC-AAAGGCT----TGTTTCCCAGGAGGCGGGGCGGCCGCCTACCCAGCCC--CCT----GCTTCATACAGATACCACAGCATTTTGTTA---------------TCGTTCTTAC--GGTTATTACAGTGGTTTTTTAATATACGATTAAAACACT----AAGTTT-----TTATTACTCACTTTGGTTTC--AGTTCATTTCAACAATCACTT
i canFam3.chr10             C 0 C 0

a score=15169.000000
s hg38.chr22_GL383582v2_alt      1820 6 +    162811 GCTGAG
s panTro4.chr22              40810959 6 +  49737984 GCTGAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37353441 6 +  46535552 GCTGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106561866 6 - 115148730 GCTGAG
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87529336 6 -  96509753 ACTAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82358465 6 +  90941950 GCTAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24616380 6 +  33263144 GCTAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1872062 6 -   2117846 GCTGAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46033957 6 -  69331447 GCCCAG
i canFam3.chr10             C 0 I 412
e rheMac3.chr10              86874825 237 +  95678458 I

a score=33631.000000
s hg38.chr22_GL383582v2_alt      1826 24 +    162811 GCCTGTTCTGACGGCCGGGC--------------GGAC
s panTro4.chr22              40810965 24 +  49737984 GCCTGTTCTGACGGCCGGGC--------------GGAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37353447 24 +  46535552 GCGTGTTCTGACCGCCGGGC--------------AGAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106561872 24 - 115148730 GCCTGTTCTGACGGCCGGGC--------------GGAC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87529342 37 -  96509753 TCCTGCTCCGGCCACCGTGC-AGTCCTAGGTGCGGGAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82358471 37 +  90941950 TCCTGCTCCGGCCACCCTGC-AGTCCTAGGTGCGGGAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24616386 37 +  33263144 TCCTGCTCCGGCCACCGTGC-AGTCCTAGGTGCGGGAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1872068 38 -   2117846 GCCTGCTCTGGCGGCCGGGGGGGTCCCAGGTGCGGGAA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46033963 412 -  69331447 I
e rheMac3.chr10              86874825 237 +  95678458 I

a score=257611.000000
s hg38.chr22_GL383582v2_alt      1850 120 +    162811 CCAAGACCGC---------GGCCACGCCCAGCAGGACGCGGACTGAGGGAG---CCGGGGCTGCGCCGCCACTCTCGTGACGCCACCATGCC-GGCCAGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCC
s panTro4.chr22              40810989 120 +  49737984 CCAAGACCGC---------GGCCACGCCCAGCAGGACGCGGACTGAGGGAG---CCGGGGCGGCGCCGCCGCTCTCGTGACGCCACCACGCC-GGCCAGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37353471 120 +  46535552 CCAGGACCGC---------GGCCACGCCCAGCAGGACGCGGACTGAGGGAG---CCCGGGCGGCGCCGCCGCTCTCGTGACGCCACCACGCC-GGCCAGTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106561896 120 - 115148730 CCAGGACTGC---------GGCCACGCCCAGCAGGACGCGGACGGAGAGGG---CCGGGGCGACGCCGCCGCTCTCATGACGCCACCACGCC-GGCTACTGACAAACACCTCCCTCCCGCCGCCCCAGGAGCC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87529379 116 -  96509753 CCAGGACCGC---------GGCCCCGCCCCGGAAGACGCGGACGTAGGGAG---CCGGGGCGGCGCCGCTGCTCTCGTGACGTCACTACGCC-GGCCAGTGACAAACA----CCTCCTACCGCCCCAGGAGCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82358508 116 +  90941950 CCAGGTCCGC---------GGCCCCGCCCCGGAGGACGCGGACGTAGGGAG---CCGGGGCGGCGCCGCTGCTCTCGTGACGTCACCACGCC-GGCCAGTGACAAACG----CCTCCCACCGCCCCAGGAGCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24616423 116 +  33263144 CCAGGACCGC---------GGCCCCGCCCCAGAGGACGCGGACGTAGGAAG---CCGGGGCGGTGTCGCTGCTCTCGTGACGTCACCACGCC-GGCCAGTGACAAACA----CCTCCCACCGCCCCAGGAGCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1872106 105 -   2117846 CCTGGACTGC--------TGGCTTTGC------AGACGC----------AG---CTGGGGCGGCCGCGCAGCTCTTGTAACGTCACCACGTA-GGCCGGTGACAAACACCTCCCTCTGGCCGCCCCAGGAGGC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46034375 131 -  69331447 CCAGGACCGCCCGCCCGACGACCCCGCCCCGCCG--CCCGGAACGAGGAGGCTACCGGGGCGTCGGCGCTCCCCGCGTGACGTCTCCACGTCGGGCGGGTGACCAACGCCCCCTTCGAAGCGCCGCAGGAACT
i canFam3.chr10             I 412 C 0
e rheMac3.chr10              86874825 237 +  95678458 I

a score=4378045.000000
s hg38.chr22_GL383582v2_alt      1970 1323 +    162811  
s panTro4.chr22              40811109 1323 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37353591 1324 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106562016 1324 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86875062 1324 +  95678458  
i rheMac3.chr10             I 237 C 0
s macFas5.chr10              87529495 1324 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82358624 1300 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24616539 1323 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1872211 1368 -   2117846  
i calJac3.chrUn_GL286373    C 0 I 302
s canFam3.chr10              46034506 1382 -  69331447  
i canFam3.chr10             C 0 C 0

a score=741655.000000
s hg38.chr22_GL383582v2_alt      3293 231 +    162811 CCTTCACTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGGCAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTTAGACTTTTCTTTCCAGTGGACTTTTCGTCCATTTTGATGGCCATAACAGTCACCTTATCTCC---------tttttttttt
s panTro4.chr22              40812432 238 +  49737984 CCTTCACTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTTAGACTTTTCTTTCCAGTGGACTTTTCGTCCATTTTGATGGCCGTAACAGTCATCTTATCTCC--ttttttttttttttttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37354915 240 +  46535552 CCTTCACTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGGTAGAGCTCA----------CTGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTTAGACTTTTCTTTCCAGTGGACTTTTCGTCCACTTTGATGGCCATAACAGTCATTTTATCTCCCtttctttttttttttttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106563340 233 - 115148730 CCTTCACTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGGTAGAGCTCA----------CTGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGATTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTTGGGTGCCTTAGACTTTTCTTTCCAGTGGACTTTTCGTCCACTTTGATGGCCATAACAGTCACtttatctcc-------ttttcttttttc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86876386 233 +  95678458 CCTTCAGTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGATAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTGAGACTTTTCTTTCCAGTGTACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTATCCCt-------ttttcttttttg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87530819 233 -  96509753 CCTTCAGTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGATAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCCGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTGAGACTTTTCTTTCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTATCCCt-------ttttcttttttg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82359924 233 +  90941950 CCTTCAGTGTACATCTTTCTGTCATTGGTTTTCGTGTATTTCGTG--TTCAGGTAGAGCTCA----------CCGTAGTCTGGCCCTCCTAGTACTGGTGCACCTGTCTGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTTAGACTTTTCTTTCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCttatccct-------ttttcttttttg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24617862 233 +  33263144 CCTTCAGTGTACATCTTTCTGTCATCGGTTTTCGTGTATTTCGTG--TTCAGGTAGAGCTCA----------CCATAGTCTGGCCCTCCTAGTACTGGTGCACCCGTATGCCTGTAGGGATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTGCCTTTGACTTTTCTTTCCAGTGGACTTTTCATCCACTTTGATGGCCATAACAGTCACCTTATCCCt-------ttttcttttttg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1873881 239 -   2117846 CCTTCACTGTACATCTTTCTGTCATAGGTTTTTGTGTATTTCATGTCTTCAAGTAGAGCTCA----------CCATAGTCCAGCCCTCCTAGTACTGGCGCACCCGTCTGCCTGTAGAAATTTA-AAGTAATTAGCAGGCTGTGTCCTAA-CTTTAGATGTCTAGGGTACCTTAGACTTTTCTTTCCAATGGACTTTTCATCCACTTTGATGGCCATGACAGTCACCTTATCTCC---ttttgttttttctttt
i calJac3.chrUn_GL286373    I 302 C 0
s canFam3.chr10              46035888 193 -  69331447 -----------------------------TTTAGTGTCTTC------TTTAAGTAGAGGTGAGCTCTTGTTGCCACAGTCCCA-ACTCTTAGTACT---TTACCTGTTTATCCGT---TATCTGCAAGTAATCACCCGGTTGTGCCATAATTTTTAGATGTCTAGAATGCCTTATCCTTTTCCTTC---------TCCTAGCCACTTTGATGGCAATAA-AATAACCTTATCTCT-------TCTTTTTTTG--
i canFam3.chr10             C 0 C 0

a score=124786.000000
s hg38.chr22_GL383582v2_alt      3524 41 +    162811 ttttgagacggagtctcactctgtcacccaggctggagtac
s panTro4.chr22              40812670 41 +  49737984 ttttgagacggagtctcactctgtcacccaggctggagtac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355155 41 +  46535552 tttggagacggagtctcactctgtcatccaggctggagtac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106563573 41 - 115148730 atttgagacggagtctcactctgtcacccaggctggagtac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86876619 41 +  95678458 ttttgagatggagtctcactctgtcacccaggctggagtac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87531052 41 -  96509753 ttttgagatggagtctcactctgtcacccaggctggagtac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82360157 41 +  90941950 ttttgagatggagtctcactctgtcacccaggctggagtac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24618095 41 +  33263144 ttttgagatggagtctcactgtgtcacccaggctggagtac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874120 41 -   2117846 tctttagacagagtctcactctgttgcctaggctggagtgc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46036081  0 -  69331447 C

a score=703558.000000
s hg38.chr22_GL383582v2_alt      3565 295 +    162811 agtggcacaatcttggctcactgcagcctccgcctcccgggttcaagtgattcttctgcctcagccttctgagtagctgggactacaggcatgtaccaccacacccggctaattttttgtatttttagtagagacggggtttcactatgttagccaggctgatttcgaacttctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcccggccttttgtcttttttttagacagagcctcactctgtctcccaggctggagtgg
s panTro4.chr22              40812711 295 +  49737984 agtggcacaatcttggctcactgcagcctccgcctcccgggttcaagtgattcttctgcctaagccttctgagtagctgggactacaggcatgtaccaccacatccggctaattttttgtatttttagtagagacagggtttcactatgttggccaggctgatttcgaacttctgagctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcccggccttttgtcttttttttagacagagcctcactctgtctcccaggctggagtgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355196 295 +  46535552 agtggcacaatcttggcttactgcaacctccgcctcccgggttcaagtggttcttctgcctcagccttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttccatttttagtagagacggggtttcactatgttggccaggctggtttcgaacttctgacctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgc-----gcctggccttttttcttttttttagacagagcctcactctgtcgcccaggctggagtgg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106563614 295 - 115148730 agtggcacaatcttggctcactgcaacctccgcctcccgggttcaagtgattcttctgcctcagccttctaagtagctgggactacaggcgtgtaccaccacacccggctaagtttttgtatttttagtagagacggggtttcactatgttggccaggctggtttcgaacttctgacctcgtgatccacctgcctcggcctcccaaggtgctgggattacaggtgtgagccactgc-----gcccggccttttttcttttttttagacagagcctcactctgtcgcccaggctggagtgg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86876660 295 +  95678458 aatggcacagtctcggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctggggttacagatatgagccactgc-----gcctggccttttttctttttttaagacagagcctcactctgttgccgaggctggagtgc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87531093 295 -  96509753 aatggcacagtctcggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctggggttacagatatgagccactgc-----gcctggccttttttctttttttaagacagagcctcactctgttgccgaggctggagtgc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82360198 292 +  90941950 agtggcacagtctcggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgccttggcctcccaaagta-tgggattacagatatgagccactgc-----gcctggccttttttctttttttaagac--agcctcactctgttgccgaggctggagtgc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24618136 300 +  33263144 agtggcacagtctccgctcactgcaacctccgcctcccgggttcaagtgattcttctgcctcagtcttctgagtagctgggactacaggcgtgtaccaccacacccggctaattttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcgaactcctgacctcgtgatctgcttgcctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccTGGCCttttttctttttttaagacagagcctcactctgttgccaaggctggagtgc
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46036081   0 -  69331447 C
e calJac3.chrUn_GL286373      1874161   0 -   2117846 C

a score=260997.000000
s hg38.chr22_GL383582v2_alt      3860 85 +    162811 aatggtgcaatcttggctcactgcaacttctgcctcctggattcaagcaattatcctgcctcagcctcccgagtagctgggatta
s panTro4.chr22              40813006 85 +  49737984 aatggtgcaatcttggctcactgcaacttctgcctcctggattcaagcaattatcctgcctcagcctaccgagtagctgggatta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355491 85 +  46535552 aatggtgcaatcttggctcactgcaacttctgcctcctgggttcaagcaattatcctgcctcagcctcccgagtagctgggatta
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106563909 85 - 115148730 aatggtgcaatcttggttcactgcaacttctgcctcctgggttcaagaaattatcctgcctcagcctcccgagtagctgggatta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86876955 85 +  95678458 aatggtgcaatcttggttcactgcaacccctgtctcctgggttcaatcaattctcctgcctcagtctcccaagtagctgggatta
i rheMac3.chr10             C 0 M 288
s macFas5.chr10              87531388 85 -  96509753 aatggtgcaatcttggttcactgcaacccctgtctcctgggttcaatcaattctcctgcctcagcctcccaagtagctgggatta
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82360490 85 +  90941950 aatggtgcaatcttggctcactgcaacccctgtctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggatta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24618436 85 +  33263144 aatggtgcaatcttggctcactgcaacccctgtctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggatta
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874161 85 -   2117846 aatggtacaatcttgcctcactgcaacccctgcctcccaggttcaagcaattctcctgcctcagcctcccaagtagctaggatta
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46036081  0 -  69331447 C

a score=44034.000000
s hg38.chr22_GL383582v2_alt      3945 19 +    162811 caggtgcgcaccaccatgc
s panTro4.chr22              40813091 19 +  49737984 caggtgcgcaccaccatgc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355576 19 +  46535552 caggcacgcgccaccatgc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106563994 19 - 115148730 caggcgcgcgccaccatgc
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87531473 19 -  96509753 caggcgtgcgccaccatgc
i macFas5.chr10             C 0 I 320
s papAnu2.chr10              82360575 19 +  90941950 caggcatgcgccaccatgc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24618521 19 +  33263144 caggcgtgcgccaccatgc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874246 19 -   2117846 caggcatgcgccaccacgc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46036081  0 -  69331447 C
e rheMac3.chr10              86877040 288 +  95678458 M

a score=54080.000000
s hg38.chr22_GL383582v2_alt      3964 24 +    162811 tgggtcaa-ttttttgtatttttag
s panTro4.chr22              40813110 24 +  49737984 tgggccaa-ttttttgtatttttgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355595 24 +  46535552 tgggccaa-ttttttgtatttttag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564013 24 - 115148730 tgggccaa-ttttttgtatttttag
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87531812 24 -  96509753 tgggccaa-ttttttgtatttttag
i macFas5.chr10             I 320 C 0
s papAnu2.chr10              82360594 24 +  90941950 tgggccaa-ttttttgtattttttg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24618540 24 +  33263144 tgggccaa-ttttttgtatttttag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874265 25 -   2117846 cgagctaatttttttgtatttttag
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46036081  0 -  69331447 C
e rheMac3.chr10              86877040 288 +  95678458 M

a score=350567.000000
s hg38.chr22_GL383582v2_alt      3988 118 +    162811 tagagacgggatttcaccatgttggccaggctggtctcaagctcctgacctcaggtggtccacccacctcagcctcccaaagtgctgggattaaaggtgtgag-ccaccctgcctggcc
s panTro4.chr22              40813134 118 +  49737984 tagagacgggatttcaccatgttggccaggctggtctcaagctcctgacctcaggtggtccacccacctcagcctcccaaagtgctgggattaaaggtgtgag-ccaccctgcctggcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355619 118 +  46535552 tagagacggggtttcaccatgttggccaggctggtctcaagctctagacctcaggtggtccacccacctcggcctcccaaagtgctgggattaaaggtgtgag-ccaccccgcctggAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564037 116 - 115148730 tagagacgg--tttcaccatgttggccaggctggcctcaagctcctgacctcaggtggtccacccgctttggcctcccaaagtgccgggattaaaggtgtgag-tgacgccgcctggcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86877328 118 +  95678458 tagagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtgatccacccaccttggcttcccaaagtgctgggattacaggtgtgag-ccaccctgcctggcc
i rheMac3.chr10             M 288 C 0
s macFas5.chr10              87531836 118 -  96509753 tagagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgag-ccaccctgcctggcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82360618 119 +  90941950 tagagacggggtttcaccatgttggctaggctggtctcaagctcctgacctcaggtggtccacccaccttggcttcccaaagtgctgggattacaggtgtgagcccacccCACCTGGCC
i papAnu2.chr10             C 0 I 1185
s chlSab2.chr19              24618564 118 +  33263144 tagagacggggtttcgctatgttggctaggctggtctcaagctcctgacctcaggtggtccacccaccttggcttcccaaagtgctgggattacaggtgtgag-ccaccccgcctggcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874290 118 -   2117846 tagagatggggtttctccatgttgtctaggctgttctcgagctcctgaccttaggtgatccacccacctcggcctcccaaagtgctaggattacaggcccgag-acaccccgcctggcc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46036081   0 -  69331447 C

a score=47669.000000
s hg38.chr22_GL383582v2_alt      4106 23 +    162811 TTCTCCTTTTCTAATTACTTTTC
s panTro4.chr22              40813252 23 +  49737984 TTCTCCTTTTCTAATTACTTTTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355737 23 +  46535552 TTCTCCTTTTCTAATTACTTTTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564153 23 - 115148730 TTCTCCTTTTCTAATTACTTTTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86877446 23 +  95678458 CTCTCCTTTTCTAATTACTTTTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87531954 23 -  96509753 CTCTCCTTTTCTAATTACTTTTC
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24618682 23 +  33263144 CTCTCCTTTTCTAATTACTTTTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874408 14 -   2117846 CTCTCCTTTTCTAA---------
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46036081  0 -  69331447 C
e papAnu2.chr10              82360737 1185 +  90941950 I

a score=98265.000000
s hg38.chr22_GL383582v2_alt      4129 36 +    162811 TTGCCCTGAATTTTTCCAAGGACTTTAAAATCAAGT
s panTro4.chr22              40813275 36 +  49737984 TTGCCCTGAATTTTTCCAAGGACTTTAAAATCAAGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355760 36 +  46535552 TTGCCCTGAATTTTTCCAAGGACTTTAAAATCAAGT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564176 36 - 115148730 TTGCCCTGAATTTTTCCAAGGACTTTAAAATCAAGT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86877469 36 +  95678458 TTGCCCTGAATTTTTCCAAGGATTTTAAAATCAAGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87531977 36 -  96509753 TTGCCCTGAATTTTTCCAAGGATTTTAAAATCAAGT
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24618705 36 +  33263144 TTGCCCTGAATTTTTCCAAGGATTTTAAAATCAAGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874422 20 -   2117846 ----------------CAAAGATTTTAAAGTCAAGT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46036081 36 -  69331447 TTGCTCTGAATTTTTCCAAGGACTTTAAAATTGAGT
i canFam3.chr10             C 0 I 3
e papAnu2.chr10              82360737 1185 +  90941950 I

a score=1411787.000000
s hg38.chr22_GL383582v2_alt      4165 391 +    162811 TGCTTATGATGGGTCT-----------GAGGGTATGTCTGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTACCCTAGATGGAGCAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGGGGGCAG----AAGCATTAATGAATTGGCCCACTTGGTGGCTAATGttttc--------gtttgttt
s panTro4.chr22              40813311 395 +  49737984 TGCTTATGATGGGTCT-----------GAGGGTATGTCTGTGAGATGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGATGATGATGATGACTAACAGGTAAGACTTGCTTTACCCTAGATGGACCAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGGGGGCAG----AAGCATTAATGAATTGGCCCACTTGGTGGCTAATGttttc----gtttgtttgttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37355796 399 +  46535552 TGCTTATGATGGGTCT-----------GAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTGTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCGTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGATGATGATGATGACTAACAGGTAAGACTTGCTTTACCCTAGATGGACCAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGGGGGCAG----AAGCATTAATGAATTGACCCACTTGGTGGCTAATGttttcatttgtttgtttgttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564212 391 - 115148730 TGCTTATGATGGGTCT-----------GAGGGTATGTCCGTGAGAGGGCCCGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCTTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTCTGCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAgaggatgatgatgatgatgaCTAACAGGTAAGACTTGCTTTACCCTAGATGGACCAGGAAGCAGGGTGGAGCA-----TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACACTGGGGGCAG----AAGCATTAATGAATTGACCCACTTGGTGGCTAATGttttc----gtttgtttgttt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86877505 395 +  95678458 TGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTTCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTACCCTAGATGGACCAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGAGGGCAG----AAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt---------------ttt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87532013 395 -  96509753 TGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTTCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTACCCTAGATGGACCAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGAGGGCAG----AAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttt---------------ttt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82361922 399 +  90941950 TGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGaggatgacgatgatgatgactAACAGGTAAGACTTGCTTTACCCTAGATGGACGAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGAGGGCAG----AAGCTTTAATGAATTGACCCACTTggtggctaatgttttt-----------tgttt
i papAnu2.chr10             I 1185 C 0
s chlSab2.chr19              24618741 399 +  33263144 TGCTTATGATGGGTCTGAGGTCCACAGGAGGGTATGTCCGTGAGAGGGCCAGGTCTTCTTTGGTCCTGCCAGAGTGGGCTCTGGAGCTCACAGCTGCCACTCTGACCCTCTGCAGATGTCCTTTGGCCTTCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGAGGAACATGACATTTTTGTTCCAGAGGATGACGATGATGATGACTAACAGGTAAGACTTGCTTTACCCTAGATGGACGAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACAATGAGGGCAG----AAGCTTTAATGAATTGACCCACTTGGTGGCTAATGttttt-----------tgttt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874442 397 -   2117846 TGCTTATGATGGGTCTGAGTTCCACAGGAGGGAGTGTCCATGAGAGGGCCGGGTCTTCTTTGGTCTTGCCAGAGGCGACTC--GAGCTCACAGCCACCACTTTGACCCTCTGCAGATGTCCTTCGGCCTTCTCCGTGTGTTTTCCATCGTGATCCCCTTTCTCTATGTCGGGACGCTCATTAGCAAGAACTTTGCTGCTCTGCTTGAGGAACATGACATTTTTGTTCCAGAGGATGATGATGATGACGACTAACAAGTAAGACTTGCTTTACCCTAGATGGACCAGGAAGCAGGGTGGAGCATCTG-TCTGTGATGCAGTCTGGCCT-GGTAGCAGCATTTGGACATTGGGGGCAG----AAGCTTTAATGAATTGACCCACTTGGCGGCTAATGTTTTT-----------ATTTT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46036120 397 -  69331447 CGCATATTGTGGGCCTCGGGTCCACAGGAG----TGCCCCCGAA--GGCCAGGCCTTCTGTGGTCCCATCAGAGTGGGCTCTGGAGCTTATGGCCACCACTCTGACCCTCTGCAGATGTCCTTCGGCCTCCTCCGTGTGTTCTCCATTGTGATCCCCTTTCTCTATGTTGGGACGCTTATCAGCAAGAACTTTGCTGCTCTCCTCGAGGAGCATGACATTTTTGTCCCAGAAGATGACGATGACGATGACTAACAGGTAGGGTGTCCTCTTCTCCAG-TGGACCAGAAAG--GGATGGGGCATCTGAACTCTGATGTCCTTTGCCCTGGGTGGCAGTTTCTGATCACTTGAAGAAGTGCAGACCTTCAATAAATTGACTCACTT---GGCTAATAGTTTT-------ATTTTGCTT
i canFam3.chr10             I 3 I 186

a score=18600.000000
s hg38.chr22_GL383582v2_alt      4556 7 +    162811 g--tttttt
s panTro4.chr22              40813706 7 +  49737984 g--tttttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37356195 7 +  46535552 g--tttttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564603 9 - 115148730 gtttttttt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86877900 7 +  95678458 g--tttttt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87532408 7 -  96509753 g--tttttt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82362321 7 +  90941950 g--tttttt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24619140 7 +  33263144 g--tttttt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1874839 7 -   2117846 G--CTTTTT
i calJac3.chrUn_GL286373    C 0 I 351
e canFam3.chr10              46036517 186 -  69331447 I

a score=386296.000000
s hg38.chr22_GL383582v2_alt      4563 159 +    162811 gagacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgggtagctgggattacagacatgcgccactgtgcctggctaattttgtatt
s panTro4.chr22              40813713 159 +  49737984 gagacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgggtagctgggattacaggcatgcgccaccgtgcctggctaattttgtatt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37356202 159 +  46535552 gagacagagttttgctcttgttgcctaggctggagttcaatggcatgatctcgactcattgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgagtagctgggattacaggcatgtgccaccatgcccggctaattttgtatt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564612 159 - 115148730 gagacggagtctcgctcttgttgcctaggctggagtgcaatggcatgatctcgactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctaccgagtagctgggattacaggcatgcgccaccatgcccggctaattttgtatt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86877907 157 +  95678458 gagacggagtttcgctc--gttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87532415 157 -  96509753 gagacggagtttcgctc--gttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82362328 156 +  90941950 gagacggagtttcgctcttgttacacaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagc---ctgagtagcttggattacaggcatgtgccaccatgcctggctaattttgtatt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24619147 159 +  33263144 gagacggagtttcgctcttgttacccaggctggagtgcaatggcatgatctcaactcactgcaacctctgccttccaggttcaagcgattctcctgcctcagcctactgagtagcttggattacgggcatgtgccaccatgcctggctaattttgtatt
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46036517 186 -  69331447 I
e calJac3.chrUn_GL286373      1874846 351 -   2117846 I

a score=299410.000000
s hg38.chr22_GL383582v2_alt      4722 124 +    162811 tttagtagagacggggtttctccat-gttagccaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgagccactgcgcccagccA
s panTro4.chr22              40813872 124 +  49737984 tttagtagagacggggtttctccat-gttagccaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgagccactgcgcccagccA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37356361 124 +  46535552 tttagtagagacagggtttctccat-gtcaggcaggctagtctcaaactcccgacctcaggtgatccacccaccttggcctcccaaagtgctgtgattacaggcgtgagccactgcgcccagctG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564771 124 - 115148730 ttttgtagagacggggtttctcaat-gttagtcaggctagtctcaaactcccgaccccaggtgatccacccaccttggcctcccaaagtgttgtgattacaggcgtgagccgctgcgcccagccG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86878064 124 +  95678458 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcactgcgcccagccA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87532572 124 -  96509753 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcctgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcactgcgcccagccA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82362484 122 +  90941950 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaacccccgacctcaggtgatccacccaccttggcctcccagagtgctgcgattacaggcgtgagtcact--gcccAGCTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24619306 124 +  33263144 tttagtagagacagggtttctccat-gttagtcaggttggtctcaaactcccgacctcaggtgatccacccaccctggcctcccagagtgctgcgattacaggcgtgagtcactgcgcccagccG
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46036703  88 -  69331447 TTTAGAAACTGCAGGTCTTCACCATGGTCAGTGAGGTGCACAGCAAACTCTATGCC-----TGTTCCATTCA----------------------GCTTTCTGGTGTTGGCTTCTG----------
i canFam3.chr10             I 186 C 0
e calJac3.chrUn_GL286373      1874846 351 -   2117846 I

a score=1384865.000000
s hg38.chr22_GL383582v2_alt      4846 424 +    162811 ACTTCATGTGCTCTAATATGTGCTGCATGGCATT-CTGTCAAGAGATGAGGACACTCCTG-TTCCTTAGCCTGGCATTCAAGGCTTGCCATAATCTGGTCACACCTCTTATTCCAGTCTCATCTTCCATATTTCCAGCCACACACCGATTCCCAGTATTCACCATTTCTTGAGTT-TTCA-CACTCATACCCACCCCCAAACATTGGCTCATTGTTCCTCCCACA-------------TGGAAGGCTCC---TTCCCAGAG---CTCTGGGTCTTAATTCCA-CCCATTCTACAGTGTCTTTGAAG---TCTTCGTTCCTCCTTTCATTTGAAAGTTGACGGCTCCTTCCTCTAAGCAA---------CCAGTACCTCTCTTCAAATACTCGGTATTATGTGGCTAAACACACACAAAG--CAAAATtttactagactctgagcttcttgctggcaggggac
s panTro4.chr22              40813996 425 +  49737984 ACTTCATGTGCTCTAATATGTGCTGCATGGCATT-CTGTCAAGAGATGAGGACACTCCTGATTCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttattccagtctcatcttccatatttccagccacacaccgattcccagtattcaacatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctcc---ttcccagag---ctctgggtcttaattcca-cccattctacagtgtctttgaag---tcttcgttcctcctttcatttgaaagttgacggctccttcctctaagcaa---------ccagtacctctcttcaaatactcggtattatgtggctaaacacacacaaac--caaaattttactagactctgagcttcttgctggcaggggac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37356485 423 +  46535552 ACTTCATGTGCTCTAATATGTGCTGCATGGCATT-CTGTC-AGAGATGAGGACACTCCTGACTCCTTAGCTTGGCATTCAAGTCTTGCCATAAtctggtcacacctcttattccagtctcatcttccatatttccagccacacaccgatttccagtattcaccattccttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcttcccaca-------------tggaaggctcc---ttcccagag---ctctgggtgttaattcca-cccattctac-gtgtctttgaag---tcttccttcctcctttcatttgaaagttgacggctccttcctctgagcaa---------ccagtacctctcttcaaatactcggtattatgtggctaaacacacacaaac--caaaattttactagactctgagcttcctgctggcaggggac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106564895 423 - 115148730 ACTTCATGTGCTCTAATATGTGCTGCATGGCATT-CTGTC-AGAGATGAGGACACTCCTGACTCCTTAGCCTGGCATTCAAGGC-TGCCATAAtctggtcacacctcttattccagtctcttcttccatatttccagccacacgccgattcccagtattcaccatttcttgagtt-ttca-tgctcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctct---ttcccagag---ctctgggtcttaattcca-cccatcctacagtgtctttgaag---tcttccttcctcctttcatttgaaagttgatggctccttcctctgagcaa---------ccagtacctctcttcaaatactcggtattatgtggccaaacacacacaaac--caaaattttactagactctgagcttcttgctggcaggggac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86878188 435 +  95678458 ACTTCATGTGCTCTAATATGTGCTTCATGGCATTACTGTC-AGAGATGAGGACACTCCTGACTCCTTAGCCTGGCATTCAAGGCTTGCcataatctggtcacacctcttattccagtctcatcttccatatttccagccacacaccgattcccagtattcaccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttccgagag---ctctgggtcttaattccaccccattctacagtgcctttgaag---tcttccttcctcccttcatttgaaagttgactactccttcctctgagcaaccagtacctccagtacctctcttcaaatactcggtatcatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87532696 435 -  96509753 ACTTCATGTGCTCTAATATGTGCTTCATGGCATTACTGTC-AGAGATGAGGACACTCCTGACTCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttattccagtctcatcttccatatttccagccacacaccgattcccagtattcaccatttcttgagtt-ttca-cactcatacccacccccaaacattggctcattgttcctcccaca-------------tggaaggctgt---ttccgagag---ctctgggtcttaattccaccccattctacagtgcctttgaag---tcttccttcctcccttcatttgaaagttgactactccttcctctgagcaaccagtacctccagtacctctcttcaaatactcggtatcatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82362606 435 +  90941950 ACTTCATGTGCTCTAATATGTGCTTCATGGCATTACTGTC-AGAGATGAGGACACTCCTGACTCCTTAGCCTGGCATTCAAGGCTTGCCATAATCTGGTCACACCTCTTATTCCAGTCTCATCTTCCATATTTCCAGTCACACACCGATTCCCAGTATTCACCATTTCTTGAGTT-TTCA-CACTCATACCCACCCCCAAACATTGGCTCATTGTTCCTCCCACA-------------TGGAAGGCTGT---TTCTGAGAG---CTCTGGGTCTTAATTCCACCCCATTCTACAGTGTCTTTGaag---tcttccttcctcccttcatttGAAAGTTGACTACTCTTTCCTCTGAGCAACCAGTACCTCCAGTACCTCTCTTCAAATACTCGGTATTATGTGTCTAAACACACTCAAAC--CAAAATTTTACTAGACTCTGAGCTTCTTGCTGGCAGGGGAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24619430 436 +  33263144 ACTTCATGTGCTCTAATATGTGCTTCATGGCATTACTGTC-AGAGATGAGGACACTCGTGACTCCTTAGCCTGGCATTCAAGGCTTGCCATAAtctggtcacacctcttattccagtctcatcttccatatttccagccacacaccgattcccagtattcaccatttcttgagtt-ttcaccactcatacccacccccaaacattggctcattgttcttcccaca-------------tggaaggctgt---ttccgagag---ctctgggtcttaattccaccccattctacagtgtctttgaag---tcttccttcctcccttcatttgaaagttgactactccttcctctgagcaaccagtacctccagtacctctcttcaaatactcggtattatgtgtctaaacacactcaaac--caaaattttactagactctgagcttcttgctggcaggggac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1875197 418 -   2117846 ACTTCCTGTGCTCTAATATGTGCTGCATGGCATCACTGTC-AGAGATGAGGACACTCCTGACTCCTTA-CCTGGCATTCAAGGCTTGCCATGAtttggtcgtgcctcttattccagtctcatcttccatatttccagccacccactgatccccagtattcaccatttcttgagtt-tgca-cactcatacccacccccaaatattggctcattgttcctcccaca-------------tggaaggctct---ttcccagaggctctttgggtcttaattcta-cccatccttcagtgtctttgaag---tcttccttcct---TTCATTTGAAAG-TGACTGCTCCTTCCTCTGAGCAA---------CCAGTAC--CTCTTCAAACACTCAGTATTGTGTGTCTAAA-ACACACTAAC--CAAAATTTTACTCCACTC--agctttttgctggcaggggat
i calJac3.chrUn_GL286373    I 351 C 0
s canFam3.chr10              46036791 414 -  69331447 -------GTGCTCTAATATGTGCCATGTGGCTGC-CTTTCTGTAGCTAAGGATGGCTCTAGCCCCGTGGTCTGACATTGAAGGCGTGCcatgatctggtcacacctgttcctccagcctcatcttccacattcccaactacatgcctatccccagtattcactatttcttgaatcaccca-catgcttacccactcccaagcggtggcttactacccccccccccccccccgcccaattggaaaaatgttaattcccacta---ctc------ccaatgaaa-acagttcttcatgggctttgaggaaaacttcccccattcccccatttgaaag-tgactactgtgccctctgactga---------ccagtatctct-------------------tgtgataggatacacttacacctctaacttttgctagactaagagctgcttgctggcaagaaac
i canFam3.chr10             C 0 I 115

a score=2553114.000000
s hg38.chr22_GL383582v2_alt      5270 769 +    162811  
s panTro4.chr22              40814421 765 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37356908 765 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106565318 766 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86878623 773 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87533131 773 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82363041 776 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24619866 775 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1875615 769 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46037320 796 -  69331447  
i canFam3.chr10             I 115 I 20

a score=1854947.000000
s hg38.chr22_GL383582v2_alt      6039 632 +    162811  
s panTro4.chr22              40815186 632 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37357673 633 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106566084 630 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86879396 631 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87533904 631 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82363817 633 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24620641 633 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1876384 646 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46038116  20 -  69331447 I

a score=216047.000000
s hg38.chr22_GL383582v2_alt      6671 313 +    162811 ---------------------------------------------------------------------------aaaaagaaggggtcagccaggtgcggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcagatcacaaggtcaggagagcgagaccatcctggctaacacagtgaaactctgtctctattaaaaaatagaagaaattagccgggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaagaatggcgtgaacccgcgaggc-agagcttgcagtgagccgagatggcaccactgcactccagcctgggcgac-agagtgagactccatctc------aaaaaaaaaaaaaa-
s panTro4.chr22              40815818 309 +  49737984 ---------------------------------------------------------------------------aaaaagaaggggtcagccaggtgcggtggctcacacctgtaaccccagcactttgggaggccaaggcgggcagatcacaaggtcaggagagcgagaccatcctggctaacacggtgaaaccctgtctctattaaaaaatagaagaaattagctgggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcagg---agaatggtgtgaacccgggaggc-agagcttgcagtgagtcgagatggcaccactgcactccagcctgggcgac-agagagagactccatctc-------aaaaaaaaagaaa-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37358306 316 +  46535552 ---------------------------------------------------------------------------aaaaagaaggggtcggccgggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacaaggtcacaagatcgagaccattctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaattagccggacatggtggcgggcgcctgtagtcccagctacttgggaggctgaagcagg---agaatggcatgaacctgggaggc-agagcttgcagtgagccgagatggcgccactgcactccagcctgggcgac-agagcgagacgccgtctcaaaaaaaaaaaaaaaaaaga-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106566714 307 - 115148730 ---------------------------------------------------------------------------aaaaagaaggggttggccaggtacggtggctcacacctgtaatcccagcactttgggaggccaaagcgggcggatcacaaggtcaggagatggagaccatcctggctaacacggtgaaaccctgtctctact-aaaaatacaaaaaattagccgggcgtggtggtgggcgcctgtcgtcccagctactcgggaggctgaggcagg---agaatggtgtgaacccgggaggc-agagcttgcagtgagcggagatggcgccactgcactccagcctgggcgac-agagcgagact-cgtctc-------aaaaaaaaaaaaa-
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1877030 385 -   2117846 aaaaagggagtcatgggaacctcaacttgaagctggttggaagttctgaaggcttggacttgagaatgttgtctaaagaaagtggaagcagcca-gcgtggtggctcaggcctgtaatcccaacactttgggaggccgaggtgcgtggatcacgagatcaggagatcgagaccatcttggtcaacatggcaaaaccccgtctctact-aaaaatacaaaaaattagctgggcatggtggcgcgtgcctgtaatcccagctactcaggaggctgaggcagg---agaattgcctgaacccaggaggtgggaggttgcggtgagctgagatcacgccattgcactccagcctgggtaacaagagcgaaactctgtctc-------aaaaaaaaaaaaaa
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46038116  20 -  69331447 I
e chlSab2.chr19              24621274   0 +  33263144 C
e papAnu2.chr10              82364450   0 +  90941950 C
e macFas5.chr10              87534535   0 -  96509753 C
e rheMac3.chr10              86880027   0 +  95678458 C

a score=621293.000000
s hg38.chr22_GL383582v2_alt      6984 221 +    162811 aaaaagaaggggtcatggg------aacttgaagctcagaagttctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcgaagagaattggaggacaggcagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat
s panTro4.chr22              40816127 221 +  49737984 aaaaagaaggggtcatggg------aacttgaagctcagaagttctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgagactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcgaagagaattggagggcaggcagctggtgtctgctgcagaactgactgcttgcttagtgtgggaagaaaccctcat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37358622 221 +  46535552 aaaaagaaggggtcatggg------aacttgaagctcagaagttctggaggcttggacttgcgaatgttgtctaatgggggcgggagcagtcttgtgggactgagccccaaacctgtggaatctgttgctatctccaggtagatagtgttcaaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567021 221 - 115148730 aaaaagaaggggtcatggg------aacttgaagctcagaagttctggaggcttggacttgcgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccacgtagatagtgttcaaagagaaatggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880027 227 +  95678458 aaaaagaaggggtcatgggaactccaacttgaagctcacaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87534535 227 -  96509753 aaaaagaaggggtcatgggaactccaacttgaagctcacaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82364450 227 +  90941950 AAAAAGAAGGGGTCATGGGAACTCCAACTTGAAGCTCAGAAGTGCTGGAGGCTTGGACTTGTGAATGTTGTCTAATGGGGGTGggagcagtcttgtgggactgagccccaaacctgtggaatctgatgctatctccaggtagatagtgttggAAGAGAATTGGAGGACagccagctggtgtctgctgcagaactGACTGCTTGCTTAGTGTGGGGAGAAACCCTCAT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24621274 227 +  33263144 aaaaagaaggggtcatgggaactccaacttgaagctcagaagtgctggaggcttggacttgtgaatgttgtctaatgggggtgggagcagtcttgtgggactgagccccaaacccgtggaatctgatgctatctccaggtagatagtgttggaagagaattggaggacagccagctggtgtctgctgcagaactgactgcttgcttagtgtggggagaaaccctcat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1877415 141 -   2117846 ----------------------------------------------------------------------------------gaaagtggtcttgtggggctaagcccccaacctgtgggatctgatgctatctccaggtagatagtgttggaagtgaactggagaacagccagctggtgtctgctagaca----actacttgcttagtgtggggagaaaccctcat
i calJac3.chrUn_GL286373    C 0 I 281
e canFam3.chr10              46038116  20 -  69331447 I

a score=5079.000000
s hg38.chr22_GL383582v2_alt      7205 3 +    162811 aac
s panTro4.chr22              40816348 3 +  49737984 aac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37358843 2 +  46535552 -ac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567242 2 - 115148730 -ac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880254 2 +  95678458 -ac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87534762 2 -  96509753 -ac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82364677 2 +  90941950 -AC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24621501 2 +  33263144 -ac
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46038116 20 -  69331447 I
e calJac3.chrUn_GL286373      1877556 281 -   2117846 I

a score=664701.000000
s hg38.chr22_GL383582v2_alt      7208 240 +    162811 gtttgatcacagaagtcttatgtgtttattgttattgagtgagagaacacaaaaacac-cttgagtttttcccTCAGGTTCCTTACGTGAAAAGATTATAAAGGGATCCTTGGTGCCATAAGGTTTGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggcggaggcaggaggatcacttgagcccag-gagttcaagactggcctgggcg-cggtggctcacgccagc
s panTro4.chr22              40816351 240 +  49737984 gtctgatcacagaagtcttatgtgtttattgttattgagtgagagaacacaaaaacac-cttgagtttttcccTCAGGTTCCTTAAGTGAAAAGATTATAAAGGGATCCTTGGTGCCATAAGGTTTGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggctgcggcaggaggatcacttgagcccag-gagttcaagactggcctgggcg-tggtggctcacgccagc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37358845 241 +  46535552 gtttgatcacagaagtcttatgtgtttattgttattgagtgagagaacacaaaaacacttttgagtttttcccTCAGGTTCCTTAGGTGAAAAGATTATAAAGGGATCCTTGGTGCCATAAGGTTTGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggctgaggcaggagcatcacttgagcccag-gagttcaagaccagcctgggtg-cagtggctcacgccacc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567244 234 - 115148730 gtttgatcacagaagtcttatgtgtttattgttattgagt--gagaacacaaaaacac-TT----TTTTTCCCTCAGGTTCCTTAGGTGCAAAGATTATAAAGGGATCCTTGGTGCCATAAGGTTTGGggccatgcacaatggctgatgcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagcccag-gagttcaagaccagcctgggca-cggtggctcacgccagc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880256 237 +  95678458 gtttgatcacagaagtcttacgtgtttattgttactgagtgagagaacacaaaaacatttttgagttttttccTCAGGTTCCTAAGGTGAAAA---TATAAAGGGATCCTTGGTGCCTTAAGTTTTGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttcagccca--aagttcaagaccagcctgggcg-cagtggctcacgccagc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87534764 237 -  96509753 gtttgatcacagaagtcttacgtgtttattgttactgagtgagagaacacaaaaacatttttgagTTTTTTCCTCAGGTTCCTAAGGTGAAAA---TATAAAGGGATCCTTGGTGCCTTAAGTTTTGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttcagccca--aagttcaagaccagcctgggcg-cagtggctcacgccagc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82364679 237 +  90941950 GTTTGATCACAGAAGTCTTATGTGTTTATTGTTACTGAGTGAGAGaacacaaaaacatttttgagttttttcctCAGGTTCCTAAGGTGAAAA---TATAAAGGGATCCTTGGTGCCGTAAGTTTTGGGGCCATGCACAATGGCTGaggtctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagccca--aagttcaagaccagcctgggcg-cagtggctcacgccagc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24621503 237 +  33263144 gtttgatcacagaagtcttatgtgtttattgttactgagtgagagaacacaaaaacatttttgagTTTTTTCCTCAGGTTCCTAAGGTGAAAA---TATAAAGGGATCCTTGGTGCCGTAAGTTTTGGggccatgcacaatggctgaggcctgtagtcccaacactttgggaggctgaggcaggaggatcacttgagccca--aagttcaagaccagcctgggcg-cagtggctcacgccagc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1877837 236 -   2117846 gcctaatcacaggagtcttatgtgattattgttgttcagtgagagaacatagaaaCAC-TT----TTTTTTCCTCAAGTTGCTTACGTAAAAAGATTATAAAGGGATCCCTAATGCCATAAGTTTTGGAACCATgtacaatgactgatgcctgtaatctcaacactctgggatgctga-gcaggaggatcacttgagcccagttagttc-agaccagTGTGAGTGCCGGTGGCTCAAGCCAGC
i calJac3.chrUn_GL286373    I 281 M 426
e canFam3.chr10              46038116  20 -  69331447 I

a score=7896.000000
s hg38.chr22_GL383582v2_alt      7448 3 +    162811 act
s panTro4.chr22              40816591 3 +  49737984 act
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37359086 3 +  46535552 act
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567478 3 - 115148730 act
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880493 3 +  95678458 act
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87535001 3 -  96509753 act
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82364916 3 +  90941950 act
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24621740 3 +  33263144 act
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46038116 20 -  69331447 I
e calJac3.chrUn_GL286373      1878073 426 -   2117846 M

a score=645893.000000
s hg38.chr22_GL383582v2_alt      7451 247 +    162811 ttgggaggccacggc-gggtggattacttga-----------------------ggtcaagagtttgagac-------cagcctggccaacatg-gtgaaact-ccgtcttttctaaaaatataaaacta------gctggatgtggtggtccatgcctgtaatcccagctacttgggaggctgaggcagggagaattacttga-accaggaggtggaaggtgcagtgagccaagatcacaccagtgcactccagcctgggcaacaacagcgagact-ccatctcaaa
s panTro4.chr22              40816594 248 +  49737984 ttgggaggccaaggc-gggtggattacttga-----------------------ggtcaagagtttgagac-------cagcctggccaacatg-gtgaaactcccgtcttttcaaaaaatataaaacta------gctggatgtggtggtccatgcctgtaatcccagctacctgggaggctgaggcagggagaatcacttga-accaggaggtggaaggtgcagtgagccaagatcacaccagtgcactccagcctgggcaacaacagcgagact-ccatctcaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37359089 247 +  46535552 ttgggaggccaaggc-gggtggattgcttga-----------------------ggtcaagagtttgagac-------cagcctggccaacgtg-gtgaaact-ccgtcttttctaaaaatataaaacta------gctggatgtggtggtccatgcctgtaatcccggctacttgggaggctgagccagggagaatcacttga-accgggaggtggaaggtgcagtgagccaagatcccagcactgcattccagcctgggcaacaacagcgagact-ccatctcaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567481 247 - 115148730 ttgggaggccaaggc-gggtggattgcgtgc-----------------------ggtcaagagtttgaaac-------cagcctggccaacatg-gtgaaact-ctgtcttttctaaaaatataaaacta------gctggatgtggtggtccacgcctgtaatcccagctacttgggaggccgaggcagggagaatcacttga-accgagaggtggaaggtgcagtgagccaagatcatgccactgcactccagcctgggcaacaacagcgagact-ccatctcaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880496 247 +  95678458 ttgggaggccaaggc-gggtggattgcttga-----------------------ggtcaagagtttgggag-------cagcctggccaacatg-gtgaaact-ccgtctcttctaaaaatataaaacta------gccggatatggtggtccacgcctgtaatcccagctacgtgggaggctgaggcagggagaatcacttga-accgggaagcagagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagact-ccatctcaaa
i rheMac3.chr10             C 0 I 54
s macFas5.chr10              87535004 247 -  96509753 ttgggaggccaaggc-gggtggattgcttga-----------------------ggtcaagagtttgggag-------cagcctggccaacatg-gtgaaact-ccgtctcttctaaaaatataaaacta------gccggatatggtggtccacgcctgtaatcccagctacgtgggaggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagact-ccatctcaaa
i macFas5.chr10             C 0 I 7
s papAnu2.chr10              82364919 246 +  90941950 ttgggaggccaaggc-gggtggattgcttga-----------------------ggtcaagagtttgagag-------cagcctggccaacatg-gtgaaact-ccgtctcttctaaaaatataaaacta------gctggatgtggtggtccacgcctgtaatcccagctacttggg-ggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagact-ccatctcaaa
i papAnu2.chr10             C 0 I 11
s chlSab2.chr19              24621743 247 +  33263144 ttgggaggccaaggc-gggtggattgcttga-----------------------ggtcaagagtttgagag-------cagcctggccaacatg-gtgaaact-ccgtctcttctaaaaatgtaaaacta------gctggatgtggtggtccacgcctgtaatcccagctacttgggaggctgaggcagggagaatcacttga-accgggaagcggagggtgcagtgagccaagatcacgccactgcactccagcctgggcaacaacagcgagact-ccatctcaaa
i chlSab2.chr19             C 0 I 14
s calJac3.chrUn_GL286373      1878516 254 -   2117846 ttgggaggctaaggcagggagaattgcttgaactgggaggtggagggtacagtgagccaagattgcagcactgcacttcagcctgggcaacaagagtgaaact-ctgtctcaaaaaaaaaaaaaaaaagaaaaaaggccgggcgtggtggctcacacctgtaatcctagcactttgggaggccgaggtgggcag-atcacctgaggtcaggagtttgaga-------------------------------ctagcctggccaac-atggagaaactaatctcttaaa
i calJac3.chrUn_GL286373    M 426 C 0
e canFam3.chr10              46038116  20 -  69331447 I

a score=93223.000000
s hg38.chr22_GL383582v2_alt      7698 51 +    162811 aaaaagaaaagaa-----------aaaaagacca------------------------------------gcctgggcaatg--gagagacgccatctct
s panTro4.chr22              40816842 53 +  49737984 aaaaagaaaagaa-----------aaaaagacca------------------------------------gcctgggcaatggagagagaccccgtctct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37359336 59 +  46535552 aaaaaaaaaaaaa---agaaaaagaaaaagacca------------------------------------gcctgggcaatg--gagagaccccatctct
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567728 62 - 115148730 aaaaaaaaaaaaagaaagaaaaagaaaaagacca------------------------------------gcctgggcaatg--gagagaccccatctct
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87535258 49 -  96509753 gaaagaaaaagaa-----------aaaaagacca------------------------------------gcctgggcaatg----gagaccccatctct
i macFas5.chr10             I 7 C 0
s papAnu2.chr10              82365176 51 +  90941950 gaaagaaaaagaa-----------aaaaagacca------------------------------------gcctgggcaatg--gagagaccccatcttt
i papAnu2.chr10             I 11 I 8
s chlSab2.chr19              24622004 51 +  33263144 gaaagaaaaagaa-----------aaaaagacca------------------------------------gcctgggcaatg--gagagaccccatctct
i chlSab2.chr19             I 14 C 0
s calJac3.chrUn_GL286373      1878770 87 -   2117846 aaaaaaaaaaGAA-----------AAAAAATATATGTATGTATGTAAAGTTTCTGGGTCTTAAAAAAAATGCCTGGGCAATG--GATAGACCCCATCTCT
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46038116 20 -  69331447 I
e rheMac3.chr10              86880743 54 +  95678458 I

a score=15156.000000
s hg38.chr22_GL383582v2_alt      7749 15 +    162811 att------taaaaaaaaaaa
s panTro4.chr22              40816895 18 +  49737984 att---aaaaaaaaaaaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37359395 21 +  46535552 ctaaaaaaaaaaaaaaaaAAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567790 15 - 115148730 att------aaaaaaaaaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880797 15 +  95678458 ------aaaaaaaaaaaaaaa
i rheMac3.chr10             I 54 C 0
s macFas5.chr10              87535307 15 -  96509753 ------acaaaaaaaaaaaaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82365235 15 +  90941950 ------aaaaaaaaaaaaaaa
i papAnu2.chr10             I 8 C 0
s chlSab2.chr19              24622055  9 +  33263144 ------------acaaaaaaa
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1878857  8 -   2117846 -------------ACCAAAAA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46038116 20 -  69331447 I

a score=4966804.000000
s hg38.chr22_GL383582v2_alt      7764 1441 +    162811  
s panTro4.chr22              40816913 1440 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37359416 1446 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106567805 1447 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86880812 1451 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87535322 1451 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82365250 1450 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24622064 1452 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1878865 1436 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46038136 1613 -  69331447  
i canFam3.chr10             I 20 I 1189

a score=83368.000000
s hg38.chr22_GL383582v2_alt      9205 27 +    162811 TGGATGTTCCCTTGATGAATCTTATCT
s panTro4.chr22              40818353 27 +  49737984 TGGATGTTCCCTTGATGAATCTTATCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37360862 27 +  46535552 TGGATGTTCCCTTGATGAATCTTATCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106569252 27 - 115148730 TGGATATTCCCTTGATGAATCTTATCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86882263 27 +  95678458 TGGATGTTGCCTTGATGAATCTTATCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87536773 27 -  96509753 TGGATGTTGCCTTGATGAATCTTATCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82366700 27 +  90941950 TGGATGTTGCCTTGATGAATCTTATCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24623516 27 +  33263144 TGGATGTTGCCTTGATGAATCTTATCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1880301 27 -   2117846 TGGATGTTCCCTTGATCAATCTTACCT
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46039749 1189 -  69331447 I

a score=1197544.000000
s hg38.chr22_GL383582v2_alt      9232 329 +    162811 ATTTAACCAGATGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCCGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTAAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
s panTro4.chr22              40818380 329 +  49737984 ATTTAACCAGAAGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCCGAACCAGTAGCTGCTTTCTAAACTC-GGAGACAAAATGTTCATTTGGAAAGACTAAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACATGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCTTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37360889 329 +  46535552 ATTTAACCAGATGATAACA-----TCCAAGTTCAAGTATTTCTCTGAA-ACACAACAATAATCACTGCTGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGGACAAGTTGGGTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTAACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCTAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106569279 329 - 115148730 ATTTAACCAGATGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ACACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGGACAAGTTGGCTGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86882290 328 +  95678458 ATTTATCCAGATGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87536800 328 -  96509753 ATTTATCCAGATGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82366727 328 +  90941950 ATTTATCCAGATGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAATATGACTCAGGGTAGAAATTGTATggtt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24623543 328 +  33263144 GTTTATCCAGATGATAACC-----TCCAAGTTCAAGTATTTCTCTGAA-ATACAGCAATAATCACTGCTGAACCAGTAGCTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGCAAAGACTGAGAAGTAGTGAACAAGTTGG-TGATCTTTTAAATTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACCCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCCATTTTCACAGTGATGTCCAGCTGGAATTGGTGTACTAGAGAGAAAAACATGACTCAGGGTAGAAATTGTATGGTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1880328 327 -   2117846 ATTTAACCAGGTGATAATC-----TCCAAGTTCAACCATTTCTCTGAA-ACACAGCAATAATCACTGCTGAACCAGTAACTGCTTTCTAAACTT-GGAGACAAAATGTTCATTTGGAAAGACTAGT--TTTGCGGACTAGTTGGCCGATCTTTTAAACTGGTCAGGGAGGGTCAGTTACCTTAATGACCAGAAGATCAACCACTCTGGGGTCTGTGACGTGGGCATTCTTCATAAACATTTCTCTGACTTTATCTCGTCCCTGTTTCACAGTGATGTCCAGCTGGAATTGGTGCACTAGAGAGAAAAACATGATTCAGGGTAGAAATTATACGGTT
i calJac3.chrUn_GL286373    C 0 I 321
s canFam3.chr10              46040938 315 -  69331447 actcaaccagagagccaccaggcaccccCGTTCGTATGTTTCTCTGAACACTAAGCAATAGTTA--ACTGACTCGGTAGTTGCTTTTTAAACTTGGGAGACAAA----------------ACTGAGATGCTCTGGACAAGCTGGCTGCTCTTTCAAGTCA--CAGGGAAGGTTAGTTACCTTAATGACCAGAAGATCCACCACCCTGGGGTCTGTGACGTGGGAATTCTTCATAAACATTTCTCGGACTTTATCCCGTCCTTGCTTCACAGTGATGTCTAGCTGGAATAAGTGCACTAAAGAG-AAAACACGATTCAGAGTAGAAATTATGTGGTT
i canFam3.chr10             I 1189 C 0

a score=628054.000000
s hg38.chr22_GL383582v2_alt      9561 191 +    162811 AAA---------TAAAACCTAGAGTCAAATGATACTCATTG-AACACATACAGGTCGCCCattcatttc-ttcaccaaaa---aattagcctgaccctaggctaggtgcttgaggat-gagacatgtgattcatggtatttgctctcaaggaacttatta-tttgtttggggaaa-aagacCACTGAATTTGAAGAGGcagtaaagca
s panTro4.chr22              40818709 200 +  49737984 AAAACATGTTTTTAAAACCTAGAGTCAAATGATACTCATTG-AACACATACAGGTCGCCCattcatttc-ttcaccaaaa---aattagcctgaccctaggctaggtgcttgaggat-gagacatgtgattcatggtatttgctctcaaggaacttatta-tttgtttggggaaa-aagacCACTGAATTTGAAGAGGcagtaaagca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37361218 199 +  46535552 AAAACATGTTTTTAAAACCTAGAGTCAAATGATACTCATTG-AACACATACAGGTTGCCCattcatttc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat-gagacatgtgattcatggtatttgctctcaaggaacttatta-tttgtttggggaaa-aagacCACTGAATTTGAAGAGGCAGTAAAGCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106569608 195 - 115148730 AAAACATGTTTTTAAAACCTAGAGTCAAATGATACTCATTG-AACACATACAGGTTGCCCattcatttc-ttcacc-aaa---agttagcctgaccctaggctaggtgcctgaggat-gagacatgtgattcatgctatttgctctcaaggaactta-----ttgtttggggaaa-aagacCACTGAATTTGAAGAGGcagtaaagca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86882618 200 +  95678458 AAAACATGTTTTTAAAACCTAGAGTCAAAGGATACTCATTG-AACACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat-gagacgtgtgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagacCACTGAATTTGAAGAGGcagtaaagca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87537128 200 -  96509753 AAAACATGTTTTTAAAACCTAGAGTCAAAGGATACTCATTG-AACACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagcctgaccctaggctaggtgcctgaggat-gagacgtgtgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagacCACTGAATTTGAAGAGGCAGTaaagca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82367055 197 +  90941950 aaaacatgtttttaaaacctAGAGTCAAAGGATACTCATTG-AACACATACAGGTCGCCCATTCATTCC-TTcacc-aaa---aattagcctgaccCTAGGCTAGGTGCCTGAGGAT-GAGACGTGTGATTCATGGCATTTGCTCTCAAGGAAC---TTATTTTGTTTGGGGAAA-AAGACCACTGAATTTGAAGAGGCAGTAAAGCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24623871 199 +  33263144 AAAACATGTTTTTAAAA-CTAGAGTCAAAGGATACTCATTG-AACACATACAGGTCGCCCattcattcc-ttcacc-aaa---aattagtctgaccctaggctaggtgcctgaggat-gagacgtgtgattcatggcatttgctctcaaggaacttattattttgtttggggaaa-aagacCACTGAATTTGAAGAGGCAGTaaagca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1880976 175 -   2117846 aaaa---------aaaaCCTGGAGTCAAAGGATATTCACTG-AACACATACAGGTCGCCCA-CCATTCC-TTCACT-AAA---AATTAGCCTTACCATAGTCTAGGT-------------GACTTGTGATTCACAGCATTTGCTCTCAAGGAACTTAT---TTTATTTGGGGAAA-AAGACCACTGAATTTGAAGAGGcagtaaagca
i calJac3.chrUn_GL286373    I 321 C 0
s canFam3.chr10              46041253 203 -  69331447 AAAACATGTTTTACAAAAACTGAGTCAATGGATAGTTACTGAAACACATAGAGGATGCCCattcatttcattcagc-aaatactactagcctgaccctaagctgagtacttgagcctggagaggagtga---acaggggcttgtctcaaggagcttatag-tttgtttgaagagataAGATCACTGCATTTGAAAAGGCAATAGAGCA
i canFam3.chr10             C 0 I 4147

a score=296737.000000
s hg38.chr22_GL383582v2_alt      9752 97 +    162811 ttgttcaagagtttgaacaacctgggttcaaatcccagcttttgttagctatatgatcccgtgtaagttaactttcttgtgcctgagtgtatttttt
s panTro4.chr22              40818909 97 +  49737984 ttgttcaagagtttgaacaacctgggttcaaatcccagcttttgttagctatatgatcccgtgtaagttaactttcttgtgcctgagtgtattttta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37361417 97 +  46535552 TTGTTCAAgagtttgaataagctgggttcaaatcccaacttctgttagctatatgatcccgtgtaagttaactttcttgtgcctgagtatatttttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106569803 97 - 115148730 ttgttcaagagtctgaacaacctgggttcaaatcccaacttttgttagctatatgatcctgtgtaagttaactttcttgtgcctgagAGTATTTTTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86882818 97 +  95678458 ttgttcaagagtttgaacaacctgggttcaaatcccaacttttgttaggtatatgatcctgtgtaagttaactttcttgtgcctgagtgtatttttt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87537328 97 -  96509753 ttgttcaagagtttgaacaacctgggttcaaatcccaacttttgttaggtatatgatcctgtgtaagttaactttcttgtgcctgagtgtatttttt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82367252 97 +  90941950 TTGTTCAAGAGTTTGGacaacctgggttcaaatcccaactttTGTTAGGTATATGATCCTGTGTAAGTTAACTTTCTTGTGCctgagtgtatttttt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24624070 97 +  33263144 ttgttcaagagtttgaacaacctgggttcaaatcccaacttttgttaggtatatgatcctgtgtaagttaactttcttgtacctgagtGTATTTTTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1881151 95 -   2117846 ttgttcaagagtttgaacaacctgggttcaaatcccaac-tctgtta-ttgtatgatcctctgtaagttaactttcttgtgcctgagtgtatttttt
i calJac3.chrUn_GL286373    C 0 I 4059
e canFam3.chr10              46041456 4147 -  69331447 I

a score=631743.000000
s hg38.chr22_GL383582v2_alt      9849 305 +    162811 aaaaaatTATTTTATGggctgggcgcggtggctcacgcctgtaat-cccagcactttgggaggccgaggtgggcggatca--tgaggtcaggagatcgagactaccctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggtgggtgcctgtaattccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggtggaccttgcagtgagccgaggtcgcaccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaa
s panTro4.chr22              40819006 302 +  49737984 aaaAAATTATTTTATGggctgggcgcggtggctcacgcctgtaat-cccagcactttgggaggccgaggtgggcggatca--tgaggtcaggagattgagactaccctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtggtgggtgcctgtaattccagctactcgggaggctgaggc---agaatggtgtgaacccgggaggtggaccttgcagtgagccgaggtcgcaccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37361514 306 +  46535552 aaaaaatTATTTTATGggacgggcacggtggctcacacctgtaat-cccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctccactaaaaatac-aaacatgagccgggcatggtggtgggtgccggtaatcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctgagatggtgccactgcattccagcctgggcgacagagtgagactgtgtctcaaaaaaaa
i ponAbe2.chr22             C 0 I 3679
s nomLeu3.chr7b             106569900 305 - 115148730 AAAAAATTATTTTAGGgactgggcgcagtggctcacgcctgtaat-cccagcactttgggaggccgaggcgggcggatca--ggaggtcaggagattgagactaccctggctaacacagtgaaaccctgtctctactaaaaatacaaaaaattagctgggcgtggtggcgggtgcctgtaattccagctacttgggaggctgaggcaggagaatggtgtgaacccgggaggttgagcttgcagtgagccgaggtcacaccactgcactccagcctgggtgacacagtgagactccgtctcaaaaaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86882915 305 +  95678458 -ttaaattaTTTTTTTAgccgggtgcggtggctcccgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatttctactaaaatcac-aaacattagccaggcgtggtggcgggcgcccgtaatcccagctactcgggaggctgaggcaggagaatcacttcaacccgggaggcggaggtggcagtgagctgagatggtgccactgcactccagcct-ggtgaaagagtgagcctgtgtctcaaaaaaaa
i rheMac3.chr10             C 0 I 4416
s macFas5.chr10              87537425 305 -  96509753 -ttaaattacTTTTTTAgccgggtgcggtggctcacgcctgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatttctactaaaatcac-aaacattagccaggcgtggtggcgggcgcccgtaatcccagctactcgggaggctgaggcaggagaatcacttcaacccgggaggcggaggtggcagtgagctgagatggtgccactgcactccagcct-ggtgaaagagtgagactgtgtctcaaaaaaaa
i macFas5.chr10             C 0 I 1
s papAnu2.chr10              82367349 307 +  90941950 aaaaaattatctttttagcCGGGTGCGGtcgctcacgcgtgtaatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatctctactaaaattac-aaacattagccgggcatggtggtgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttcaacccaggaggtggaggttgcagtgagctgagatggtgccactgcactccagcctgggtgaaagagtgagactgtgtctcaaaaaaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24624167 307 +  33263144 TTTTAATTATTTTTTTAgccgggtgcggcggctcacgcctataatccccagcactttgggaggctgaggagggtggatcacctgaggtcaggagtttaagaccagcctggccaacatggcgaaaccccatctctactaaaattac-aaacattagccaggcatggtggcgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttcaacccgggaggcggcggtggcagtgagctgagatggtgccactgcactccagcctgggtgaaagagtgagactgtgtctcaaaaaaaa
i chlSab2.chr19             C 0 I 3656
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I

a score=8033.000000
s hg38.chr22_GL383582v2_alt     10154 18 +    162811 taataaTTATTTTATTAg
s panTro4.chr22              40819308 18 +  49737984 aaataaTTATTTTATTAg
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106570205 12 - 115148730 -aaaaa-----TTATTAg
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87537731 18 -  96509753 aaaaaattatttttttgg
i macFas5.chr10             I 1 I 4388
s papAnu2.chr10              82367656 18 +  90941950 aaaaaattatttttttgg
i papAnu2.chr10             C 0 I 3928
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e chlSab2.chr19              24624474 3656 +  33263144 I
e rheMac3.chr10              86883220 4416 +  95678458 I
e ponAbe2.chr22              37361820 3679 +  46535552 I

a score=80350.000000
s hg38.chr22_GL383582v2_alt     10172 295 +    162811 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctccactaaaaatacaaacatgagccgggcatggtggtgggtgcctgtaatcccagctactcgggagactgaggcaggagaatcacttgaacccgggaggtggagggtgcagtgagctgagatgg-gccactgcattccagcctgggtgacagagtgagactgtgtctcaaaaaaaaaaaaaaaa
s panTro4.chr22              40819326 295 +  49737984 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctccactaaaaatacaaacatgagccgggcatggtggtgggtgcctgtaatcccagctactcgggagactgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatgg-gccactgcattccagcctgggcgacagagtgagactgtgtctcaaaaaaaaaaaaaaaa
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106570217 296 - 115148730 ctgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcatctgaagtcaggagttcaagaccagcctggccaacatggtgaaaccccatctccactaaaaatacaaacatgagccgggcatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagctgagatggtgccactgcattccagcctgggcgacagagtgagactgtgtctcaaaaaaaagaaaaaaa
i nomLeu3.chr7b             C 0 I 3646
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e chlSab2.chr19              24624474 3656 +  33263144 I
e papAnu2.chr10              82367674 3928 +  90941950 I
e macFas5.chr10              87537749 4388 -  96509753 I
e rheMac3.chr10              86883220 4416 +  95678458 I
e ponAbe2.chr22              37361820 3679 +  46535552 I

a score=273.000000
s hg38.chr22_GL383582v2_alt     10467 3 +    162811 aaa
s panTro4.chr22              40819621 3 +  49737984 aaa
i panTro4.chr22             C 0 I 3777
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e chlSab2.chr19              24624474 3656 +  33263144 I
e papAnu2.chr10              82367674 3928 +  90941950 I
e macFas5.chr10              87537749 4388 -  96509753 I
e rheMac3.chr10              86883220 4416 +  95678458 I
e nomLeu3.chr7b             106570513 3646 - 115148730 I
e ponAbe2.chr22              37361820 3679 +  46535552 I

a score=0.000000
s hg38.chr22_GL383582v2_alt     10470 294 +    162811 ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaa
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e chlSab2.chr19              24624474 3656 +  33263144 I
e papAnu2.chr10              82367674 3928 +  90941950 I
e macFas5.chr10              87537749 4388 -  96509753 I
e rheMac3.chr10              86883220 4416 +  95678458 I
e nomLeu3.chr7b             106570513 3646 - 115148730 I
e ponAbe2.chr22              37361820 3679 +  46535552 I
e panTro4.chr22              40819624 3777 +  49737984 I

a score=642.000000
s hg38.chr22_GL383582v2_alt     10764 13 +    162811 aataaTTATTATT
s nomLeu3.chr7b             106574159 13 - 115148730 aataaatgttagt
i nomLeu3.chr7b             I 3646 C 0
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e chlSab2.chr19              24624474 3656 +  33263144 I
e papAnu2.chr10              82367674 3928 +  90941950 I
e macFas5.chr10              87537749 4388 -  96509753 I
e rheMac3.chr10              86883220 4416 +  95678458 I
e ponAbe2.chr22              37361820 3679 +  46535552 I
e panTro4.chr22              40819624 3777 +  49737984 I

a score=1596.000000
s hg38.chr22_GL383582v2_alt     10777 16 +    162811 TTATTAgctgggcgcg
s nomLeu3.chr7b             106574172 15 - 115148730 t-attggccagtcaca
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82371602 16 +  90941950 TTAtcagccagtcaca
i papAnu2.chr10             I 3928 C 0
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e chlSab2.chr19              24624474 3656 +  33263144 I
e macFas5.chr10              87537749 4388 -  96509753 I
e rheMac3.chr10              86883220 4416 +  95678458 I
e ponAbe2.chr22              37361820 3679 +  46535552 I
e panTro4.chr22              40819624 3777 +  49737984 I

a score=347114.000000
s hg38.chr22_GL383582v2_alt     10793 273 +    162811 gtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcacgcaactataatcccagctactcgggaggctgaggcatggggaaatcacttgaacccgggaggtggaggttgcagtgagccaagatcgcgccattgccctccagcctgggagacaagagcgagactctgtctc
s panTro4.chr22              40823401 273 +  49737984 gtggctcatgcctgtaatcccagcactttggcaggcccaggccggcggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcacgcaactataatcccagctactcgggaggctgaggcatggggaaatcacttgaacccgggaggtggaggttgcagtgagccgaaatcgcgccattgccctccagcctgggagacaagagcgagactctgtctc
i panTro4.chr22             I 3777 C 0
s ponAbe2.chr22              37365499 272 +  46535552 gtggctcatgcctgtaatcccagcactttggcaggtccaggctggcggatcacctgaggtcaggagttcaagacagcctggccaacagggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcatgcaactataatcccagctacttgggaggctgaggcatgggg-aatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagacaagagcgagactctgtatc
i ponAbe2.chr22             I 3679 C 0
s nomLeu3.chr7b             106574187 272 - 115148730 gtggctcatgcctgtaatcccagcactttggcaggccaaggctggcggatcacctgaggtcaggagttcaagacagcctggccaacatggtgaaaccccgtttctactaaaaatacaaaagttagccaggtgtggtggcatgcaactataatcccagctacttgggaggctgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagacaagagcgagactctgtctc
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82371618 269 +  90941950 gtggctcatgcctgtaatcccagcactttggcaggctgaggccagcggatcacctgaggtcagaagttcgagacagcctggccaacatggtgaaacctcatctctactgaaaatacaaaagttagccaggtgtggtggcgcgcacctataatcccagctatttgggaggccgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgtcattgcactccagcctgggagac-agagcgaga--ctgtctc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24628130 269 +  33263144 gtggctcatgcctgtaatcccagcactttggcaggctgaggccagcggatcacctgaggtcagaagtttgagacagcctggccaacatggtgaaaccccatctctactaaaaattcaaaagttagccaggtgtggtggcgcgcgcctataatcccagctacttgggatgctgaggcatgggg-aatcacttgaacccgggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggagac-agagtgaga--ctgtctc
i chlSab2.chr19             I 3656 C 0
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e macFas5.chr10              87537749 4388 -  96509753 I
e rheMac3.chr10              86883220 4416 +  95678458 I

a score=5733.000000
s hg38.chr22_GL383582v2_alt     11066 3 +    162811 aaa
s panTro4.chr22              40823674 3 +  49737984 aaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37365771 3 +  46535552 aaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106574459 3 - 115148730 aaa
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87542137 3 -  96509753 aaa
i macFas5.chr10             I 4388 C 0
s papAnu2.chr10              82371887 3 +  90941950 aaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24628399 3 +  33263144 aaa
i chlSab2.chr19             C 0 I 2
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I
e rheMac3.chr10              86883220 4416 +  95678458 I

a score=197179.000000
s hg38.chr22_GL383582v2_alt     11069  99 +    162811 aaaaaaaaaaaaaaaaaaa---GTGAGTTATCATTACTGTTTTTTTCATTAAATACTTAAAATTTTACTTTTGTTTTTTATTAATGCTCAGGCTGTTCTAAG
s panTro4.chr22              40823677 102 +  49737984 aaaaaaaaaaaaaaaaaaaaaaGTGAGTTATCATTACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTGTTTTTTATTAATGCTCAGGCTGTTCTAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37365774  87 +  46535552 aaaaaaaaaa---------------aGTTATCATTACCATTTTTTTCATTAAATACTTAAAATTTTACTTTTGTTTTTTATTAATGCTCAGGCTGATCTAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106574462  94 - 115148730 aaaaaaaaaaaaaa--------GTGAGTTATCATTACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTTTTTTTTATTAATCCTCAGGCTGTTCTAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86887636  95 +  95678458 AAAAAAAAAAAAAAAAAAA---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTG-TCTAAG
i rheMac3.chr10             I 4416 C 0
s macFas5.chr10              87542140  95 -  96509753 aaaaaaaaaaaaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTG-TCTAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82371890  96 +  90941950 aaaaaaaaaaaaaaaaaag---gtgagttatcaatactatttttttcattaaatacttaaaattttacttttg---tttattaaTGCTCAGGCGGTTCTAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24628404  96 +  33263144 aacaaacaaacaaaaaaaa---GTGAGTTATCAATACTATTTTTTTCATTAAATACTTAAAATTTTACTTTTG---TTTATTAATGCTCAGGCTGTTCTAAG
i chlSab2.chr19             I 2 C 0
e canFam3.chr10              46041456 4147 -  69331447 I
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I

a score=2312721.000000
s hg38.chr22_GL383582v2_alt     11168 853 +    162811  
s panTro4.chr22              40823779 845 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37365861 832 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106574556 855 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86887731 844 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87542235 844 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82371986 844 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24628500 850 +  33263144  
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46045603 788 -  69331447  
i canFam3.chr10             I 4147 C 0
e calJac3.chrUn_GL286373      1881246 4059 -   2117846 I

a score=186570.000000
s hg38.chr22_GL383582v2_alt     12021 57 +    162811 agcactctagata-tttta---acttaa-tacagtaaccttctgaagaaggaattattattc---
s panTro4.chr22              40824624 57 +  49737984 agcactctagata-tttta---acttaa-tacagtaaccttctgaaaaaggaattattattc---
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37366693 57 +  46535552 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattattattc---
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575411 57 - 115148730 agcactctagata-tttta---acttaa-tacagtaactttctgaagaacgaattattattc---
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86888575 58 +  95678458 agcactctagatattttta---acttaa-tacagtaactttctgaagaaggaattatcattc---
i rheMac3.chr10             C 0 I 323
s macFas5.chr10              87543079 58 -  96509753 agcactctagatattttta---acttaa-tacagtaactttctgaagaaggaattatcattc---
i macFas5.chr10             C 0 I 324
s papAnu2.chr10              82372830 57 +  90941950 AGCACTCTAGATA-TTTTA---ACTTAA-TACAGTAACTTTCTGAAGAAGgaattatcattc---
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629350 57 +  33263144 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggaattatcattc---
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1885305 57 -   2117846 agcactctagata-tttta---acttaa-tacagtaactttctgaagaaggcactattattc---
i calJac3.chrUn_GL286373    I 4059 C 0
s canFam3.chr10              46046391 64 -  69331447 agcaaagtagata-tattacctatttaattagggccactctctgaagaaggtactatcatgatgc
i canFam3.chr10             C 0 C 0

a score=624846.000000
s hg38.chr22_GL383582v2_alt     12078 202 +    162811 ccattttaaagatgaagaaactgaggaata----gatgaaataactggcccaaggtcacacagctag---ttgagggcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCCCTGAGGAGTGGCACCGTGCTCCAGCTCACTCAAAAACACCTCTTTCTCgcac
s panTro4.chr22              40824681 202 +  49737984 ccattttaaagatgaagaaactgaggaaca----gatgaaataactggcccaaggtcacacagctag---ttgagggcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCCCTGAGGAGTGGCACCGTGCTCCAGCTCACTCAAAAACACCTCTTTCTCgcac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37366750 202 +  46535552 ccattttaaagacgaagaaactgaggaata----gatgaaataactggcccaaggtcacatagctag---ttgagggcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTCGACAGCCCTGAAGAGTGGCACCGTGCTCCAGCTCACTCAAAAACACTTCTTTCTCgcat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575468 202 - 115148730 ccattttaaagatgaagaaactgaggaata----gatgaaataactggcccaaggtcacatagctag---ttgagggcagcgcctgaagaaaagtccgtgctcctaaccaccacattctaccgCCTTTT-----------------------------CACACACACAAGCAGGGACTGGACAGCCCTGAGGAGTGGCACCGTGCTCCAGCTCACTCAAAAACACCTCTTTCTCgcac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86888956 202 +  95678458 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctcgcccaaagtcacatagctag---ttgagggcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACAAGACAGCCCTGAGGAGTGGCACCATGCTCCAGCTCACTCAAAAACACCTCTTTCTCAAGc
i rheMac3.chr10             I 323 C 0
s macFas5.chr10              87543461 202 -  96509753 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctcgcccaaagtcacatagctag---ttgagggcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACAAGACAGCCCTGAGGAGTGGCACCATGCTCCAGCTCACTCAAAAACACCTCTTTCTCAAGc
i macFas5.chr10             I 324 C 0
s papAnu2.chr10              82372887 202 +  90941950 ccattttaaagatgaagaaac--aggaaca----GATGAAATACctggcccaaagtcacatagctag---ttgAGGGCAGCGCCTGGATAAAAGTCCATGCTCCTAACCACCACATTCTACCgcctctt---------------------------cacacacacacaagcagggACTCGACAGCCCTGAGGAGTGGCACCATGCTCCAGCTCACTCAAAAACACCTCTTTCtcacac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629407 202 +  33263144 ccattttaaagatgaagaaac--aggaaca----gatgaaatacctggcccaaagtcacatagctag---ctgagggcagcgcctggataaaagtccatgctcctaaccaccacattctaccgCCTCTT---------------------------CACACACACACAAGCAGGGACTCGACAGCCCTGAGGAGTGGCACCATGCTCCAGCTCACTCAAAAACACCTCTTTCTCACGc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1885362 234 -   2117846 ccattttaaagatgaggaaactgaggaaca----gattaaataactgacccatggtcacacatctggtttttgagggcagcacctggagaaaagtccatgctcctaaccaccacattctacCACTTTTcacacacacacacacacacacacacacacacacacacacacgcaGGGACTTGACAGCTCTGAGGAGTGCCACCATGGTCCAGCTCACTCCAAAACACCTCTTTCTCAGAC
i calJac3.chrUn_GL286373    C 0 I 61
s canFam3.chr10              46046455 181 -  69331447 tcatttcacagataaggaaattgaggcatagcaggatgaaatagtttggttaaggtcatagggctaa------ggggcaaggtctggaGGCAAGGCTCGG----TGACCACCTCCTCGTATTGCTTTTC--------------------------------ATATACAGGCAGGGAGGTGGCGGCGC-AAGGGGAGCCAGGGTGCTCTAGCT--------------TCCCTCTCACAC
i canFam3.chr10             C 0 C 0

a score=3276.000000
s hg38.chr22_GL383582v2_alt     12280 1 +    162811 t
s panTro4.chr22              40824883 1 +  49737984 t
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37366952 1 +  46535552 t
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575670 1 - 115148730 t
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889158 1 +  95678458 t
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87543663 1 -  96509753 t
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373089 1 +  90941950 t
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629609 1 +  33263144 t
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46046636 1 -  69331447 T
i canFam3.chr10             C 0 I 132
e calJac3.chrUn_GL286373      1885596 61 -   2117846 I

a score=133720.000000
s hg38.chr22_GL383582v2_alt     12281 53 +    162811 ttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccattctgg
s panTro4.chr22              40824884 53 +  49737984 ttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccattctgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37366953 53 +  46535552 ttgggaggccgagacgggcggaccatgaggtcaggagatcgagaccatcctgg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575671 53 - 115148730 ttgggaggccgagacggacggatcacgaggtcaggagatcgagaccatcctgg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889159 53 +  95678458 tcgggaggccaagacgggcggatcacgaggtcaggagatcgagaccatcctgg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87543664 53 -  96509753 tcgggaggccaagacgggcggatcacgaggtcaggagatcgagaccatcctgg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373090 53 +  90941950 tcgggaggccaagacgggcggatcacgaggtcaggacatcgagaccatcctgg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629610 53 +  33263144 tcgggaggccaagacgggcggatcacgaggtcaggagatcgagaccatcctgg
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46046637 132 -  69331447 I
e calJac3.chrUn_GL286373      1885596 61 -   2117846 I

a score=196150.000000
s hg38.chr22_GL383582v2_alt     12334 76 +    162811 ctaacacggtgaaatcccgtctctactaaaaatacaaaaaaaaa----tggccggcgtggtggcgggcgcctgtaatccc
s panTro4.chr22              40824937 80 +  49737984 ctaacacggtgaaatcccgtctctactaaaaatacaaaaaaaaaaaaatggccggcgtggtggcgggcgcctgtaatccc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367006 80 +  46535552 ctaacacggtgaaaccccgtctctactaaaaatacacacacaaaaaaatgcctgacgtggtggcgggcgcctgtaatccc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575724 77 - 115148730 ctaacacggtgaaaccccgtctctactaaaaatacaaaaaaatt---acgcccggcgtggtggcgggcgcctgtaatccc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889212 76 +  95678458 ctaacacggtgaaacccagtctctactaaaaatacaaaaacata----tgccgggcgtggtggggggcccctgtaatccc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87543717 76 -  96509753 ctaacacggtgaaacccagtctctactaaaaatacaaaaacata----tgccgggcgtggtggggggcccctgtaatccc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373143 76 +  90941950 ctaacacggtgaaaccccgtccctactaaaaatacaaaaacata----tgccgggcgtggtggcgggtgcctgtaatccc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629663 76 +  33263144 ctaacacggtgaaaccccgtctctactaaaaatacaaaaacata----tgccgggcgtggtggcgggcgcctgtaatccc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1885657 74 -   2117846 ccaacatggtgaaaccctgtctctactaaaaatacaaaa--att----agctggccacggtggtgcacgcctgtagtctc
i calJac3.chrUn_GL286373    I 61 C 0
e canFam3.chr10              46046637 132 -  69331447 I

a score=242837.000000
s hg38.chr22_GL383582v2_alt     12410  94 +    162811 agctattcgg------gaggctgaggctgaggcaggagaatgacg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactgcactccagc
s panTro4.chr22              40825017  94 +  49737984 agctattcgg------gaggctgaggctgaggcaggagaatgacg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactgcactccagc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367086 100 +  46535552 agctactcgggaggctgaggctgaggctgaggcagcagaatggcg----tgaatccggcaggcggagcttgcagtgagccgagatcgcaccactgcactccagc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575801  94 - 115148730 agctattcgg------gaggctgaggctgaggcaggagaatggcg----tgaatccgggaggcggagcttgcagtgagccgagatcgcaccactgcactccagc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889288  88 +  95678458 agctactcgg------------gagactgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactgcgctccagc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87543793  88 -  96509753 agctactcgg------------gagactgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactgcgctccagc
i macFas5.chr10             C 0 I 347
s papAnu2.chr10              82373219  88 +  90941950 agctactcgg------------gagactgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatggcaccactgcgctccagc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629739  88 +  33263144 agctactcgg------------gagactgaggcaggagaatggcg----agaacccaggaggcggggcttgcagtgagccgagatcgcaccactgcgctgcagc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1885731  85 -   2117846 acctac---a------------gaggctgaggcaggagagttgat----tgaacccaggaggcggacgttgcagtgagcagaaatcgggccactagactccagc
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46046769  92 -  69331447 AGCTTTCAGG------GGGA--AATGCCAAGATAGGAAAACGGCATCTCTGCACCCAGGGAGCGGCG---GCAGGGGAGCGGGAGGAGCCCACCTCACCCGGA-
i canFam3.chr10             I 132 C 0

a score=13095.000000
s hg38.chr22_GL383582v2_alt     12504 3 +    162811 ctg
s panTro4.chr22              40825111 3 +  49737984 ctg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367186 3 +  46535552 ctg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575895 3 - 115148730 ctg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889376 3 +  95678458 ctg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87544228 3 -  96509753 ctg
i macFas5.chr10             I 347 C 0
s papAnu2.chr10              82373307 3 +  90941950 ctg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629827 3 +  33263144 ctg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1885816 3 -   2117846 ctg
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46046861 3 -  69331447 CTG
i canFam3.chr10             C 0 I 77

a score=1577.000000
s hg38.chr22_GL383582v2_alt     12507 1 +    162811 a
s panTro4.chr22              40825114 1 +  49737984 a
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367189 1 +  46535552 a
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575898 1 - 115148730 a
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889379 1 +  95678458 a
i rheMac3.chr10             C 0 I 347
s macFas5.chr10              87544231 1 -  96509753 g
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373310 1 +  90941950 a
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24629830 1 +  33263144 a
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1885819 1 -   2117846 g
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46046864 77 -  69331447 I

a score=6142.000000
s hg38.chr22_GL383582v2_alt     12508 3 +    162811 gcg
s panTro4.chr22              40825115 3 +  49737984 gcg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367190 3 +  46535552 gcg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575899 3 - 115148730 gcg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889727 3 +  95678458 gct
i rheMac3.chr10             I 347 C 0
s macFas5.chr10              87544232 3 -  96509753 gct
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373311 3 +  90941950 gca
i papAnu2.chr10             C 0 I 352
s chlSab2.chr19              24629831 3 +  33263144 gca
i chlSab2.chr19             C 0 I 363
s calJac3.chrUn_GL286373      1885820 3 -   2117846 gca
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46046864 77 -  69331447 I

a score=64445.000000
s hg38.chr22_GL383582v2_alt     12511 28 +    162811 acacagcgagactctgtcacaaaca----aaa
s panTro4.chr22              40825118 28 +  49737984 acacagcgagactctgtcacaaaca----aaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367193 27 +  46535552 acacagcgagactctgtcacaaac-----aaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575902 23 - 115148730 acacagcaagactctgtcac---------aaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889730 32 +  95678458 acacagcgagactctgtcacaaacaaaacaaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87544235 32 -  96509753 acacagcgagactctgtcacaaacaaaacaaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373666 32 +  90941950 acacagcgagactctgtcaccaacaaaacaaa
i papAnu2.chr10             I 352 C 0
s chlSab2.chr19              24630197 32 +  33263144 acacagcgagactctgtcacaaacaaaacaaa
i chlSab2.chr19             I 363 C 0
s calJac3.chrUn_GL286373      1885823 27 -   2117846 gcagagcaagactcc-tctcaaaaa----aaa
i calJac3.chrUn_GL286373    C 0 I 2216
e canFam3.chr10              46046864 77 -  69331447 I

a score=156178.000000
s hg38.chr22_GL383582v2_alt     12539 51 +    162811 aaaTCCAACGGGCATCTATAATTACACTCTGCAACTCTagactttgggttc
s panTro4.chr22              40825146 51 +  49737984 aaaTCCAACGGGCATCTATAATTACACTCTGCAACTCTagactttgggttc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367220 51 +  46535552 aaaTCCAACGGGCATCTATAATTACactctgcaactctagactttgggttc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575925 51 - 115148730 aaaTCCAACAGGCATCTATAATTACactctgcaactctagactttgggttc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889762 50 +  95678458 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87544267 50 -  96509753 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373698 50 +  90941950 aaatccaacgGGCATCTA-AATTACACTCTGCAACTCTAGACTTTGGGTTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24630229 50 +  33263144 aaaTCCAACGGGCATCTA-AATTACactctgcaactctagactttgggttc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1888066 51 -   2117846 AAATCTAACGGGCATCTGTAATCATactctgcaactctagactgtgggttc
i calJac3.chrUn_GL286373    I 2216 C 0
e canFam3.chr10              46046864 77 -  69331447 I

a score=5194943.000000
s hg38.chr22_GL383582v2_alt     12590 1666 +    162811  
s panTro4.chr22              40825197 1663 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37367271 1653 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106575976 1660 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86889812 1643 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87544317 1647 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82373748 1654 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24630279 1655 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1888117 1622 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46046941 1730 -  69331447  
i canFam3.chr10             I 77 I 183

a score=629388.000000
s hg38.chr22_GL383582v2_alt     14256 214 +    162811 ataaagcataataataaaat--ggaagcttttgaacctcagtactgacttaagaaGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcttcacaacacaccagtgagat-tgtgttgatataccc-------------ttttttttttttttttttgagacagagtgaga
s panTro4.chr22              40826860 213 +  49737984 ataaagcataataataaaat--ggaagcttttgaacctcagtactgacttaagaaGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcttcacaacacaccagtgagat-tgtgttgatataccc--------------tttttttttttttttttgagacagagtgaga
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37368924 222 +  46535552 ataaaacataataataaaat--GGAAGCTTTTGAACCTCAGTACTGACTT---AAGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCATTAGTagccactgttctctagttttctaggt------acattaacttggctaggcctcacaacacaccagtgagat-agtgttgatataccctttttttttttttttttttttttttttttttgagac--agtgaga
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106577636 219 - 115148730 ataaagcataataataaaat--ggaagcttttgaacctcagtactgacttaagaaGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttctctaggt------acattaacttggctaggcctcacaacacaccagtgagat-agtgttgatataccc--------tttttttttttttttttttttttgagacagagtgaga
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86891455 217 +  95678458 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccagtgagat-aATGTTGATATATCC----------Tttttttttttttttttttttgagacagagtgaga
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87545964 215 -  96509753 ATAAAGCATAATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATGTGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccagtgagat-aATGTTGATATATCC------------tttttttttttttttttttgagacagagtgaga
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82375402 211 +  90941950 ataaagcataataataaaat--ggaagctTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTAGCCACTGTTCTCTAGTTTTCTAGGT------ACATTAACTTAACTAGGCCCCACAACACACCAGTGAGAT-AGTGGtgatatatcc----------------tttttttttttttttgagacagagtgaga
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24631934 209 +  33263144 ATAAAGC---ATAATAAAAT--GGAAGCTTTTGAACTTCAGTACTGACTTAAGAAGTTGTAACACACTTAAGGTTTATATGAAGTGTCCTTAGATGTCCTTAGTagccactgttctctagttttctaggt------acattaacttggctaggccccacaacacaccaatgagat-agTGTTGATATATCC---------------ttttttttttttttttgagacagagtgaga
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1889739 211 -   2117846 TAAAAGCGTAATGGTAAAAT--GGAAGCTTTCGAACCTCAGTGCCAACTTAAGAAGCTGTA--ACAGTAAAGGGTTACATAAAGTGTCCTTAGATGTCCTCAGTAGCCGGCGTTCTCTAGTTCTTTAGGtacattaacattaacttgtctaagcctcccaaca-accagagagagaagtgttgatataccc------------cccccctttttttttttttgagac--------a
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46048854 194 -  69331447 ataaaGCATGATAATAAGATCATGAAACTTTGAAACC-----ACGACCTTAAGAAGTGGtgatagagttaaggtttgtataagcattactgtgttcttctccacagccactggtcta-agttctccaggc------acactcacattttcatgcagcacaacacacctgtgggataagtcctgttagaccc----------------acttt-------------acaga-tgaga
i canFam3.chr10             I 183 I 52

a score=75342.000000
s hg38.chr22_GL383582v2_alt     14470 28 +    162811 ctc----------acctaggctggactgcaatggtgca
s panTro4.chr22              40827073 28 +  49737984 ctc----------acctaggctggactgcaatggtgca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369146 28 +  46535552 ctc----------acttaggctggactgcaatggtgca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106577855 28 - 115148730 ctc----------acctaggctggactgcaatggtgca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86891672 28 +  95678458 ctc----------acctagactggactgcaatggtgcA
i rheMac3.chr10             C 0 I 2643
s macFas5.chr10              87546179 28 -  96509753 ctc----------acctagactggactgcagtggtgcA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82375613 28 +  90941950 ctc----------acctaggctggactgcaatggtgca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24632143 28 +  33263144 ctc----------acctaggctggactgcaatggtgcA
i chlSab2.chr19             C 0 I 2665
s calJac3.chrUn_GL286373      1889950 38 -   2117846 ttcttctctgttgaccaggcctggagttcagtggcgcc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46049048 52 -  69331447 I

a score=2611.000000
s hg38.chr22_GL383582v2_alt     14498 2 +    162811 at
s panTro4.chr22              40827101 2 +  49737984 at
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369174 2 +  46535552 at
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106577883 2 - 115148730 at
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87546207 2 -  96509753 GT
i macFas5.chr10             C 0 I 3048
s papAnu2.chr10              82375641 2 +  90941950 gT
i papAnu2.chr10             C 0 I 18965
s calJac3.chrUn_GL286373      1889988 2 -   2117846 at
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46049048 52 -  69331447 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I

a score=173085.000000
s hg38.chr22_GL383582v2_alt     14500 125 +    162811 ctcggctcactgcaacctccgcctctcatgttcaagccattctcctgcctcagctttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtatttta-gtagagacggg
s panTro4.chr22              40827103 125 +  49737984 ctcggctcactgcaacctccgcctctcgtgttcaagccattctcctgcctcagctttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtatttta-gtagagatggg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369176 125 +  46535552 ctcggctcactgcaacctccgcctctcgggttcaagccattctcctgcctcagccttccgaatcgctgggattacaggtgcgcaccaccatgcatggctaatgcttgtatttta-gtaaaaacggg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106577885 125 - 115148730 ctcggctcactgcaacctccgcctctcgggttcaagccattctcctgcctcagccttccgaatcgctgggattaccggtgcgcaccaccatgcatggctaatgcttgtatttta-gtagagacggg
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10               8963171 116 +  96509753 cttggtgcactgcaacctctgcctcccagggtcaagtgattcttccatctcagcctcccgagtagctgggattacaggca-ccatcatcatgcccagctaattttt---------gtagagatgcg
i macFas5.chr10             n 3048 C 0
s papAnu2.chr10               8565918 122 -  90941950 cttggctcaccgcaacctccgcctcccaggctcaagcaattctgc---ctcagcctcctgactagctgagattacaggtgcccaccaccacg-ccagctaatttttgtatttttagtagcgacagg
i papAnu2.chr10             n 18965 C 0
s calJac3.chrUn_GL286373      1889990 125 -   2117846 ctcggctcaccgcaacctcagcctcccaggttcaagcgattttcctgcctcagcctcccgaatcgctgggattacaggtgcgcaccaccatgccctgctaatttttctatttta-gtagaaacagg
i calJac3.chrUn_GL286373    C 0 I 34
e canFam3.chr10              46049048  52 -  69331447 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I

a score=22524.000000
s hg38.chr22_GL383582v2_alt     14625 19 +    162811 gttttgctatgttggccag
s panTro4.chr22              40827228 19 +  49737984 gttttgctatgttggccag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369301 19 +  46535552 gttttgccatgttggccag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106578010 19 - 115148730 gttttgccacgttggccag
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10               8963287 19 +  96509753 ttttcaccatgttggccag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10               8566040 19 -  90941950 gtttcaccatgttggccag
i papAnu2.chr10             C 0 C 0
e canFam3.chr10              46049048 52 -  69331447 I
e calJac3.chrUn_GL286373      1890115 34 -   2117846 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I

a score=14733.000000
s hg38.chr22_GL383582v2_alt     14644 9 +    162811 gctggtctc
s panTro4.chr22              40827247 9 +  49737984 gctggtctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369320 9 +  46535552 gctggtctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106578029 9 - 115148730 gctggtctc
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10               8963306 9 +  96509753 gctggtctt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10               8566059 9 -  90941950 ggtggtctc
i papAnu2.chr10             C 0 C 0
s canFam3.chr10              46049100 9 -  69331447 gctggcccc
i canFam3.chr10             I 52 C 0
e calJac3.chrUn_GL286373      1890115 34 -   2117846 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I

a score=115421.000000
s hg38.chr22_GL383582v2_alt     14653 79 +    162811 -aaactcctgactt--------caggtgatccacccacctcagcctcccaaagtgctgggattacaggtgtgagccactgcc----cccggc
s panTro4.chr22              40827256 79 +  49737984 -aaactcctgactt--------caggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcc----cccggc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369329 79 +  46535552 -gaagtcctgactt--------caggtgatccacccgcctcggcctcccaaagtgctaggattacaggtgtgagccactgcc----cccggc
i ponAbe2.chr22             C 0 M 343
s nomLeu3.chr7b             106578038 79 - 115148730 -gaactcctgactt--------caggtgatccaccctgctcggcctcccaaagtgctgggattacaggtttgagccaccgcc----cccggc
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10               8963315 79 +  96509753 -gaactcctgacct--------taggtgatacacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacc----cccggc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10               8566068 79 -  90941950 -gaactcctgacct--------caggtgatacacctgtcttggcctcccaaagtgctgggattacaggtgtgagccaccacc----cacctc
i papAnu2.chr10             C 0 I 10
s calJac3.chrUn_GL286373      1890149 79 -   2117846 -aaaagggtgacct--------caagtgatatgcccgcctcaacctaccaaaaggctgggcttacaggcgtgagccactgcg----cccagc
i calJac3.chrUn_GL286373    I 34 C 0
s canFam3.chr10              46049109 86 -  69331447 agagtccgtgttctctctctcacag------cacctacctcAAAATACTTACCTGCCGGGGATCcccaggtggctcagtggtttaacgcggc
i canFam3.chr10             C 0 C 0
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I

a score=12019.000000
s hg38.chr22_GL383582v2_alt     14732 14 +    162811 tgatatactcattt
s panTro4.chr22              40827335 14 +  49737984 tgatatactcattt
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106578117 14 - 115148730 cAATATACTCatct
i nomLeu3.chr7b             C 0 I 8734
s macFas5.chr10               8963394 14 +  96509753 tgatatactcattt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10               8566157 14 -  90941950 tgatatactcattt
i papAnu2.chr10             I 10 C 0
s calJac3.chrUn_GL286373      1890228 14 -   2117846 cgatataaccattt
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46049195 10 -  69331447 -tgtcagccca---
i canFam3.chr10             C 0 C 0
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e ponAbe2.chr22              37369408 343 +  46535552 M

a score=96423.000000
s hg38.chr22_GL383582v2_alt     14746 138 +    162811 tatagatgagaaaactgaggcacaaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccagagtcagttt-tctGACTCTCGCAGCACCTAT-------------------------ACCATGATAT-CTACCTGTATGATTCTAAC
s panTro4.chr22              40827349 138 +  49737984 tatagatgagaaaactgaggcataaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccagagtcagttt-tctGACTCTCGCAGCACCTAT-------------------------ACCATGATAT-CTACCTGTATGATTCTAAC
i panTro4.chr22             C 0 C 0
s macFas5.chr10               8963408 138 +  96509753 tatagatgagaaaactgaggcacaaagagactaagtt--actttacagcattggggttgaagcccaggcagctggtgccacagtcggttt-tctGACTCTCACAGCACCTAT-------------------------ACCATGATAT-CTACCTGTGTGATTCTAAC
i macFas5.chr10             C 0 n 0
s papAnu2.chr10               8566171 138 -  90941950 tatagatgagaaaactgaggcacaaagagactAAGTT--ACTTTACAGCATTGGGGTTGAAGCCCAGGCAGCTGGTGCCACAGTCGGTTT-TCTGACTCTCACAGCACCTAT-------------------------ACCATGATAT-CTACCTGTGTGATTCTAAc
i papAnu2.chr10             C 0 n 0
s calJac3.chrUn_GL286373      1890242  95 -   2117846 tatagatcagaaaactgaggcacaaaaagactaaA----------------------------------------------AGTCGGTTT-TCTGACTCTCACGACACCTAT-------------------------ACCATGGTATACTATCTGTGTGATTCTAAC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46049205 163 -  69331447 ---gggtgtgatcctggagacccatggagtcccatgtcaggctccctgcatggagcctgcttctccctctgcctgtgtctctgtctgtctgtctgtctctctgtgtgtctCTCATGAATAAATGAACTGTTTAAAAAAACAAAATAC-CTACCTGTCTAATTCTAAC
i canFam3.chr10             C 0 C 0
e chlSab2.chr19              24632171 2665 +  33263144 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37369408 343 +  46535552 M

a score=23450.000000
s hg38.chr22_GL383582v2_alt     14884 67 +    162811 CTTGTGTATACCCCTGCCTCCTTCAGAAGTACCCACTATCATGATAAATTCATTGTGTTCAACATTC
s panTro4.chr22              40827487 67 +  49737984 CTTGTGTATACCCCTGCCTCCTTCAGAAGTACCCACTATCATGATAAATTCATTGTGTTCAACATTC
i panTro4.chr22             C 0 C 0
s calJac3.chrUn_GL286373      1890337 66 -   2117846 -CCCTCTATGCGCCTGCCTCCTTCAGAAGTACCCACTATTATAATAAATTCATTGCGTTTAACATTC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46049368 62 -  69331447 CCCATCCATGCTCCTGTCTCCTCCAGGAGTAGCCACTATCATG---AATTTA--GAGCTTAAGATTC
i canFam3.chr10             C 0 I 192
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309  0 -  90941950 I
e macFas5.chr10               8963546  0 +  96509753 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37369408 343 +  46535552 M

a score=1221.000000
s hg38.chr22_GL383582v2_alt     14951 12 +    162811 ------------------------AAAAAAAAAATG
s panTro4.chr22              40827554 11 +  49737984 -------------------------AAAAAAAAATG
i panTro4.chr22             C 0 C 0
s calJac3.chrUn_GL286373      1890403 36 -   2117846 CTTTTCACTGaaaaaaaaaaaaaaaaaaaaaaaaTG
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46049430 192 -  69331447 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309  0 -  90941950 I
e macFas5.chr10               8963546  0 +  96509753 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37369408 343 +  46535552 M

a score=139994.000000
s hg38.chr22_GL383582v2_alt     14963 285 +    162811 gggcgcagtggctcactcctgtaatcccaacactttgggaggccaaggcaggtgtatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagcc-ggcatggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggatcgcttgagcccgcgaggtggaggttgcggtgagccaagattgcgccgctggactccagtctgggcgacagagtgagaccctgtctcaaaagga
s panTro4.chr22              40827565 284 +  49737984 gggcgcagtggctcactcctgtaatcccaacactttgggaggccaaggcaggtgtatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagcc-ggcgtggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggatcgcttgagcctgtgaggtggaggttgcggtgagccaagattgcgccgctggactccagtctgggcgacagagtgagaccctgtctcaaaa-ga
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37369752 282 +  46535552 gggcgcggtggcccactcctgtaatcccagcactttgggaggccaaggcaggtgtatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacccccatctctactaaaaatacaaaaattagcc-ggcatggtggtgggcacctgtaatctcagctactcgggaggctgaggcaggaggatcgcttgagcctgggaggcggaggttgcggtgagccaagattgcgccactggactccagtctgggcgacagagtgagaccctgtctcaaaa---
i ponAbe2.chr22             M 343 C 0
s calJac3.chrUn_GL286373      1890439 285 -   2117846 ggacgcagtggctcacacctgtaatcccagcattttgggaagccaaggcaggtggatcacctgagctcaggagttccagtccagtgtggccaacatggtgaaa-cctcatctctactaaaaatacaaaaattagctgggcgtggtggcgggcacctgtaatcccacctacctgggaggctgaggcaggagaatcacttgagcctgggaggtggaggttacagtgagttgagactgcgccactgcactccagtctgggcgacagagtgagactctgtctcaaaaaaa
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46049430 192 -  69331447 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10               8963546   0 +  96509753 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=108424.000000
s hg38.chr22_GL383582v2_alt     15248 152 +    162811 aaagaaaa-------------------aaaaGACCTCT-aaacaacccacaaactgggagaaaatttttgcaaatcacatgttccataagggacttgtatctaggatacataaaattct-tacaactcagtaatgaaaagacaaatagccaagtttagaaatgggcaagggag
s panTro4.chr22              40827849 152 +  49737984 aaaaaaaa-------------------aaaaGACCTCT-aaacaacccacaaactgggagaaaatttttgcaaatcacatgttccataagggacttgtatctaggatacataaaattct-tacagctcagtaatgaaaagacaaatagccaagtttagaaatgggcaagggtg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37370034 152 +  46535552 gaaaaaaa-------------------aaaaGACCTCT-aaacaacccacaaactgggagaaaatttttgcaaatcacatgttccataagggacttgtatgtaggatacataaaattct-tacaactcagtaatgaaaagacaaatagccaagtttagaaatgggcaagggtg
i ponAbe2.chr22             C 0 C 0
s calJac3.chrUn_GL286373      1890724 172 -   2117846 aaaaaaaaaaaaaaaaggaaaTAGTAGAAAAGATCTCTaaaacaacccacaaactgggagaaaacttttgcaaatcacatgttccataagagacttgtatctaggagatataaaactct-tacaactcaataataaaaagacaaatagccaaattaaaaaatgggcaacggtg
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46049622 154 -  69331447 GAAaaaga-------------------aaatggccactaaaacaacccacaaactgggagaacatatttgcaaatcatatattccataaagtacttgtatctagaatatatagaagactctacaactcaataataagaagacaaacagccctatttaaaaacaagcaaaggag
i canFam3.chr10             I 192 I 11675
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10               8963546   0 +  96509753 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=114394.000000
s hg38.chr22_GL383582v2_alt     15400 220 +    162811 acaacaccaaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaacgcaaaatggtacagcagctttggaagacagtttggctttctgacaaaactaaacatactcccatcagaagatccagccattgcattccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttacagcagcttt
s panTro4.chr22              40828001 220 +  49737984 acagcaccaaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaatgcaaaatggtacagcagctttggaagacagtttggctttcttacaaaactaaacatactcccatcagaagatccagccattgcatttcttagtgtttacccaaatgagctgaaaacttatgtccacacagaaatctgcacatggatgtttacagcagcttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37370186 220 +  46535552 acaacaccaaatgctggtgaggatgtgaagcaacaggaactctccttactggtaggaatgcaaactggtacagcacctttggaagacagtttggctttgttacaaaactaaacatactcctatcagaagatccagccattgcactccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcatgtggatgtttacagcagcttt
i ponAbe2.chr22             C 0 C 0
s calJac3.chrUn_GL286373      1890896 220 -   2117846 acaacaccaaatgctggagaggatgtgaagcaacaggaactctttttactggtaggaatgcaaaatggtacagcaactttggaagacaatttggctttcttacagaactaaacatactcctatcataagatccagccattacaagccttagtgtttacccaaatgagctgaaaacttatgtccacacagaaacctgcacatggatgtttatagcagcttt
i calJac3.chrUn_GL286373    C 0 I 15260
e canFam3.chr10              46049776 11675 -  69331447 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10               8963546   0 +  96509753 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=791259.000000
s hg38.chr22_GL383582v2_alt     15620 2972 +    162811  
s panTro4.chr22              40828221 2966 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37370406 2973 +  46535552  
i ponAbe2.chr22             C 0 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309    0 -  90941950 I
e macFas5.chr10               8963546    0 +  96509753 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=837.000000
s hg38.chr22_GL383582v2_alt     18592 4 +    162811 GATA
s panTro4.chr22              40831187 4 +  49737984 AATA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37373379 4 +  46535552 GATA
i ponAbe2.chr22             C 0 C 0
s macFas5.chr10              87549257 4 -  96509753 gact
i macFas5.chr10             I 3048 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24632171 2665 +  33263144 I
e papAnu2.chr10               8566309 0 -  90941950 I
e rheMac3.chr10              86891700 2643 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=711612.000000
s hg38.chr22_GL383582v2_alt     18596 562 +    162811  
s panTro4.chr22              40831191 562 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37373383 558 +  46535552  
i ponAbe2.chr22             C 0 I 4133
s rheMac3.chr10              86894343 564 +  95678458  
i rheMac3.chr10             I 2643 C 0
s macFas5.chr10              87549261 564 -  96509753  
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24634836 568 +  33263144  
i chlSab2.chr19             I 2665 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e papAnu2.chr10               8566309   0 -  90941950 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=9544.000000
s hg38.chr22_GL383582v2_alt     19158 13 +    162811 gatatggagtctc
s panTro4.chr22              40831753 13 +  49737984 GAGATAGAGTCTC
i panTro4.chr22             C 0 I 5452
s rheMac3.chr10              86894907 13 +  95678458 gaggtggagtctt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87549825 13 -  96509753 gaggtggagtctt
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24635404 13 +  33263144 gagatggagtctt
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e papAnu2.chr10               8566309  0 -  90941950 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37373941 4133 +  46535552 I

a score=66959.000000
s hg38.chr22_GL383582v2_alt     19171 129 +    162811 actctgtcacccaggctggagtgcgatggcacgatctcagctcactgtaacctccgcctcccgggttcaagcgattctcctgcctcagccttccaagtagctgggattataggcgtacgccaccatgcc
s rheMac3.chr10              86894920 129 +  95678458 gctctgttgcccaggctggagggtgatggcacgatctcagctcactgtaacctctgcctcctgagttcaagtgattctcctgcttcagccttccgagtaggtgggattataggcgcacgccaccacgcc
i rheMac3.chr10             C 0 I 14859
s macFas5.chr10              87549838 129 -  96509753 gctcagttgcccaggctggagggtgatggtacgatctcagctcactgtaacctctgcctcctgagttcaagtgattctcctgcttcagccttccgagtaggtgggattataggcgcacgccaccacgcc
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24635417 129 +  33263144 gctctgttgcccaggctggagggtgatggcacgatctcagctcactgtaacctctgcctcctgggttcaagtgattctcctgcttcagccttccgagtaggtgggattataggcgcatgccaccatgcc
i chlSab2.chr19             C 0 I 19787
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e papAnu2.chr10               8566309   0 -  90941950 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37373941 4133 +  46535552 I
e panTro4.chr22              40831766 5452 +  49737984 I

a score=38.000000
s hg38.chr22_GL383582v2_alt     19300 3 +    162811 cag
s macFas5.chr10              87549967 3 -  96509753 tgg
i macFas5.chr10             C 0 I 16531
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309 0 -  90941950 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37373941 4133 +  46535552 I
e panTro4.chr22              40831766 5452 +  49737984 I

a score=0.000000
s hg38.chr22_GL383582v2_alt     19303 5289 +    162811  
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309    0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37373941 4133 +  46535552 I
e panTro4.chr22              40831766 5452 +  49737984 I

a score=33247.000000
s hg38.chr22_GL383582v2_alt     24592 384 +    162811 tttttttttttttttttttttgagacagagtctcactctgt-tgcccaggctggagtgcagtggcgcaatctcggttc-------actgcaagctccacctcccggcttcacaccattctcctgcctcagcctccagagtagctgggactacaggcacccaccaccatgcccagctcatttttttgtatttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccgaagtgctgggtttacaggtgtgagctaccacgcctggcccctttttgtcttttttttaaccgttgttgctttaaagtctgtttgtgtgatataggaatagctactcggcaaggcatga
s panTro4.chr22              40837218 391 +  49737984 tttttttttttttttttttttgagacagagtcttgctctgtctgcccagcctggagtgcagtggcgtgatctcagctctcatctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcctccagagtagctgggactacaggcacccaccaccatgcccagctcatttttttgtatttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccgaagtgctgggtttacgggtgtgagccaccacgcctggcccctttttgtcttttttt-aactgttgttgctttaaagtctgtttgtgtgatataggaatagctactcggcaaggcatga
i panTro4.chr22             I 5452 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I
e ponAbe2.chr22              37373941 4133 +  46535552 I

a score=722878.000000
s hg38.chr22_GL383582v2_alt     24976 2726 +    162811  
s panTro4.chr22              40837609 2726 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37378074 2748 +  46535552  
i ponAbe2.chr22             I 4133 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309    0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106578131 8734 - 115148730 I

a score=1984208.000000
s hg38.chr22_GL383582v2_alt     27702 3716 +    162811  
s panTro4.chr22              40840335 3716 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37380822 3711 +  46535552  
i ponAbe2.chr22             C 0 I 7
s nomLeu3.chr7b             106586865 3692 - 115148730  
i nomLeu3.chr7b             I 8734 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309    0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I

a score=6977.000000
s hg38.chr22_GL383582v2_alt     31418 27 +    162811 TGCCGCACTACGGCGGCGACAGCGGTG
s panTro4.chr22              40844051 27 +  49737984 TGCCGCACTACGGCGGCGACAGCGGTG
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106590557 27 - 115148730 TGCTGCACGACGGCGGCAACAGCGGTG
i nomLeu3.chr7b             C 0 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309  0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e ponAbe2.chr22              37384533  7 +  46535552 I

a score=366187.000000
s hg38.chr22_GL383582v2_alt     31445 677 +    162811  
s panTro4.chr22              40844078 677 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37384540 677 +  46535552  
i ponAbe2.chr22             I 7 I 8675
s nomLeu3.chr7b             106590584 677 - 115148730  
i nomLeu3.chr7b             C 0 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I

a score=114053.000000
s hg38.chr22_GL383582v2_alt     32122 418 +    162811 tattaatttttccttttctgcagcagacaaggtaggggttgcagcagggggaggaagacgaggggttaagtgaaa----ggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcctcgtgggtaagatattttggcctttagtttttt-----tttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggcacgatctcagctcattgcaagttccacctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggatcccgc
s panTro4.chr22              40844755 423 +  49737984 tattaatttttccttttctgcagcagacaaggtaggggttgcagcagggggaggaagacaaggggttaagtgaaa----ggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcctcgtgggtaagatattttggcctttagtttttttgttgtttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaagttccacctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggctcccgc
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106591261 423 - 115148730 tattaatttttccttttctgcagcagacaaggtaggggttgtagtagggggaggaagacaaggggttaagtgaaagatgggtgtttcagatgaaatggcagcctgtttagccacttgatctgcaaggttatttccctgacttgtaaaggaaaagtcgttttggtgtccggggacatgtacaatggctatttcttctggcaactggagattgtttaaaacatggacgattagctcttcgtgggtaagatattttggcctttaGtttttt----gtttgttttttggtgtttttttgagacggagtcttgctctgtcacccaggctagagtgcagtggcacgatctcagctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggctcccac
i nomLeu3.chr7b             C 0 I 6581
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=221128.000000
s hg38.chr22_GL383582v2_alt     32540 2365 +    162811  
s panTro4.chr22              40845178 2366 +  49737984  
i panTro4.chr22             C 0 I 715
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309    0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106591684 6581 - 115148730 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=0.000000
s hg38.chr22_GL383582v2_alt     34905 1266 +    162811  
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309    0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106591684 6581 - 115148730 I
e ponAbe2.chr22              37385217 8675 +  46535552 I
e panTro4.chr22              40847544  715 +  49737984 I

a score=71960.000000
s hg38.chr22_GL383582v2_alt     36171 770 +    162811  
s panTro4.chr22              40848259 770 +  49737984  
i panTro4.chr22             I 715 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e chlSab2.chr19              24635546 19787 +  33263144 I
e papAnu2.chr10               8566309   0 -  90941950 I
e macFas5.chr10              87549970 16531 -  96509753 I
e rheMac3.chr10              86895049 14859 +  95678458 I
e nomLeu3.chr7b             106591684 6581 - 115148730 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=1807520.000000
s hg38.chr22_GL383582v2_alt     36941 1387 +    162811  
s panTro4.chr22              40849029 1397 +  49737984  
i panTro4.chr22             C 0 C 0
s rheMac3.chr10              86909908 1382 +  95678458  
i rheMac3.chr10             I 14859 C 0
s macFas5.chr10              87566501 1382 -  96509753  
i macFas5.chr10             I 16531 C 0
s papAnu2.chr10              82394608 1386 +  90941950  
i papAnu2.chr10             I 18965 C 0
s chlSab2.chr19              24655333 1382 +  33263144  
i chlSab2.chr19             I 19787 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e nomLeu3.chr7b             106591684 6581 - 115148730 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=169974.000000
s hg38.chr22_GL383582v2_alt     38328 119 +    162811 tttgcagaaattgtgatttttttttctttataatatctgtttctctggagaatttttcatccatagcctgtatttttt-ttgttgtctttttctttctttctttctttcctttttgagac
s panTro4.chr22              40850426 118 +  49737984 tttgcagaaattgtgatttttttttctttataatatctatttctctggagaatttttcatccatagcctgtattttttgttgttgtttttttctttctttcttttttt--tttttgagac
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106598265 114 - 115148730 tttgcagaaattgtgatttttttttctttataatatctatttctctggagaatttttcatccacagcctgtattttttgttgttttctttttcttttttttttt------tttttgagac
i nomLeu3.chr7b             I 6581 C 0
s rheMac3.chr10              86911290 116 +  95678458 tttccagaaattgtgatttttttt--cttataatatctatttctctggagaatttttcatccatagcctatattttctgtttttcgtttcttttcttttttttttttt--tttttgagac
i rheMac3.chr10             C 0 I 21
s macFas5.chr10              87567883 113 -  96509753 tttccagaaattgtga-ttttttt--cttataatatctatttctctggagaatttttcatccatagcctatattttctgtttttcgtttcttttc--tcttttttttt--tttttgagac
i macFas5.chr10             C 0 I 4
s papAnu2.chr10              82395994 112 +  90941950 TTTCcagaaattgtgatttttttt--cttataatatctgtttctctggagaatttttCATCCATAgcctatattttctgtttttcttttcttttc----tcttttttt--tttttgagac
i papAnu2.chr10             C 0 I 4
s chlSab2.chr19              24656715 115 +  33263144 tttccagaaattgtgatttttttt--cttataatatctatttctctggagaatttttcatccatagcctatattttctgttttttcttttctctc-tttttttttttt--tttttgagac
i chlSab2.chr19             C 0 I 4
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=20250.000000
s hg38.chr22_GL383582v2_alt     38447 29 +    162811 tctgagcactctgttgctcacagtgcagt
s panTro4.chr22              40850544 29 +  49737984 tctgagcactctgttgctcagagtgcagt
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106598379 29 - 115148730 tctgagcactctgttgctcagagtgcagt
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87568000 17 -  96509753 tct---tactctgtctctga---------
i macFas5.chr10             I 4 C 0
s papAnu2.chr10              82396110 26 +  90941950 tct---cactctgtcgcccagagtgcagt
i papAnu2.chr10             I 4 C 0
s chlSab2.chr19              24656834 26 +  33263144 tct---cactctgtcgcccagagtgcagt
i chlSab2.chr19             I 4 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e rheMac3.chr10              86911406 21 +  95678458 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=1449550.000000
s hg38.chr22_GL383582v2_alt     38476 793 +    162811  
s panTro4.chr22              40850573 793 +  49737984  
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106598408 789 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86911427 797 +  95678458  
i rheMac3.chr10             I 21 C 0
s macFas5.chr10              87568017 797 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82396136 803 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24656860 798 +  33263144  
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e calJac3.chrUn_GL286373      1891116 15260 -   2117846 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=996793.000000
s hg38.chr22_GL383582v2_alt     39269 419 +    162811 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgaaagcagtggaattagc---tg-tttctcatttcttggagcagggttattctgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtggcgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccaggataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggcgggtagagaaatactgtcaggttggggcagggttaggtgagtctgagctcagact-ctttctgggAA----tctgttactgatttg
s panTro4.chr22              40851366 419 +  49737984 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgaaagcaggggaattagc---tg-tttctcatttcttggagcagggttattctgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtggcgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccaggataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggcgagtagagaaatactgtcaggttggggcagggttaggtgagtctgagctcagact-ctTTCCAGGAA----tctgttactgatttc
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106599197 426 - 115148730 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcaggcagtggaattagctgttg-tttctcatttcttggagcagggttattatgttgtgagttgctgtaatgtcctgacttggttggcctccagccaggaggtgacgctttcaagagaacaccagctgcaatactggaagggggatataagcttgccctaagttggccaggataagt-attaggatttctcaggtgatggacagggccataaagctcccaagagtttatggcttttgtgatcagctaccagggtgggtagagaaataccatcaggttggggcagggttaggtgagtctgagctcagatt-ctttccaggaatctttctgttactgatttc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86912224 427 +  95678458 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcgccttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgactttcagccaggaggtggcgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggtcaggataagt-attaggatttctcaggtggtgggcagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggtgggtagggaaataccgtcaggttggggcagggttaggtgagtctgagctcatact-ttttccaggaatctttctgttactgatttc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87568814 427 -  96509753 ttactgtgctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcgccttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacttccagccaggaggtggcgctttcaagagaacaccagctgcaatactaggagggggatataagcttgccctaagttggtcaggataagt-attaggatttctcaggtggtggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggtgggtagagaaataccgtcaggttggggcagggttaggtgagtctgagctcatact-ttttccaggaatctttctgttactgatttc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82396939 427 +  90941950 TTACTGTGctggctttctcaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccaggatgttgcagacagtggaattagctgttgttttcGCCTTCCTTGGGGCAGGGTTATTCTGTTGTGAGTTGATGTAATGTCCTGACTTGGTtgacctccagccaggaggtggcgctttcaaGAGAACACCAGCTGCAATACTAGGAGGGGGATATAAGCTTGCCCTAAGTTGGCCAGGATAAGT-ATTAGGATTTCTCAGGTGATGGACAGGGCCATAAAGCTCTCAAGAGTTTATGGCTTTTGTGATCAGCTACCAGGGCGGGTAGAGAAATACCGTCAGGTTGCGGCAGGGTTAGgtgagtctgagctcagact-ttTTCCAGgaatctttctgttactgatttc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24657658 427 +  33263144 ttactgtgctggctttcccaaatgctggttatgctagcagtgaagttgtcacgtggacagactcaggagctctggttagccagggtgttgcagacagtggaattagctgttgttttcgctttccttggggcagggttattctgttgtgagttgatgtaatgtcctgacttggttgacctccagccaggaggtggtgctttcaagagaacaccagctgcaatactaagagggggatataagcttgccctaagttggccaggataagt-attaggatttctcaggtgatggacagggccataaagctctcaagagtttatggcttttgtgatcagctaccagggcgggtagagaaataccgtcaggttggggcagggttaggtgagtctgagctcagact-ttttccaggaatctttctgttactgatttc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1906376 421 -   2117846 ttagtgtgctggc-ttctcaaatgctggttgtgctagcagtgaagttgtcacttggacagactcaggacctctggtttgccagggtgttgcaggcagtggaattagctgttatattcttcttccttggaacagggttattctgttgtgagttgctataattccctgactcggttgacctccagccaggtggtggtgctttcaagagagcaccagctgcaatccgagaagggggatataagcttgccctgagttggccaggataagtaattaaggtttttcaggtgat------ggccataaagctcccaagagtttatggcttttg-gatcagttaccaggaccggtagagaaataccgtcaggtgggggcagggttaggcgagtctgagttcagactcCtttccaggaatcttttggttactgatttc
i calJac3.chrUn_GL286373    I 15260 C 0
e canFam3.chr10              46049776 11675 -  69331447 I
e ponAbe2.chr22              37385217 8675 +  46535552 I

a score=461290.000000
s hg38.chr22_GL383582v2_alt     39688 148 +    162811 taatttttaa-ttccacagtgtttgaaggacatacttgaaataaatttaaaatccattgagatttgtttcgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA
s panTro4.chr22              40851785 148 +  49737984 taatttttaa-ttccacagtgtttgaaggacatacctgaaataaatttaaaatccattgagatttgtttcgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCTTCAGTTTCAACCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37393892 147 +  46535552 taatttttaatttccacagtggttgaaggacatac-tgaaataaatttaaaatccattgagatttgttt-gtggtccagaatatggcctatcttgttgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA
i ponAbe2.chr22             I 8675 C 0
s nomLeu3.chr7b             106599623 148 - 115148730 taatttttaa-ttccacagtggttgaaggacatacttgagataaatttaaaatccattgagatttgttttgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86912651 148 +  95678458 taatttttaa-ttccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCTATCCCTCAGTTTCAACCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87569241 148 -  96509753 taatttttaa-ttccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcatgtgtatgtgaaaCTGAGGCATCTATCCCTCAGTTTCAACCG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82397366 148 +  90941950 taatttttaa-ttccaCAGTGGTTGAAGGACAtacttgaaataaatttaaaatctattgagATTTGTTCTGTGGTCCAGAATATGgcctatcttggtgaatgtttcatGTGTATGTGAAACTGAGGCGTCCATCCCTCAGTTTCAACCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24658085 148 +  33263144 taatttttaa-ttcaacagtggttgaaggacatacctgaaataaatttaaaatctattgagatttgttctgtggtccagaatatggcctatcttggtgaatgtttcgtgtgtatgtgaaaCTGAGGCATCCATCCCTCAGTTTCAACCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1906797 148 -   2117846 taatttttaa-tgccacagtggttgaaggacatacttgaaataaatttaaaatctattgagatttgttttgtggtccagaacctggcctatcttggtgaatgttttatgtgtatatgaaaCTGAGGCATCCATTCCTCAGTTTCAACCA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46049776 11675 -  69331447 I

a score=742596.000000
s hg38.chr22_GL383582v2_alt     39836 218 +    162811 CCCATAGATTTGTAATTATT-----GTTACATTTACAGAAATTTGCAGGAAGGTAGAAGTTATTGTCTTGAACCATAAAATGTCTGTTTGAAGTctttgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggttgaatgaatg----aatAGATGACATTC---AATTGTTAGG
s panTro4.chr22              40851933 218 +  49737984 CCCATAGATTTGTAATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAAAtgtctgtttgaagtctttgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggttgaatgaatg----aatAGATGACATTC---AATTGTTAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37394039 218 +  46535552 CCCATAGATTTGTAATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGttattgtcttgaaccataagatgtctgtttgaagtctttgagctcctcaagggtaggctctatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggttgaatgaatg----aatAGATGACATTC---AATTGTTAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106599771 218 - 115148730 CCCATAGATTTGTAATTATT-----GTTACATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGAtgtctgtttgaagtcttcgagctcctcaagggtaggctgtatgtcctgtttacctttgatcctct-cagcataatgcttggaccaaaatggaagctcagcagacactggttgaatgaatg----aatAGATGACATAC---AATTGTTAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86912799 218 +  95678458 CCTGTAGATTTGTAATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGAtgtctgtttgaagtcttcaagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggttgaatgaatg----aatAGATGACATTC---AATTGTTAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87569389 218 -  96509753 CCTGTAGATTTGTAATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcaagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggttgaatgaatg----aatAGATGACATTC---AATTGTTAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82397514 218 +  90941950 CCTGTAGATTTGTAATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAAATCTTCGAGTTCCTCAGTGGTAGGCTGTATATCCTGTTTACCTTTGACTCTCT-CAGCATAGTGCTTGGACCAAAATGGAAGCTCAGTGGAcactggttgaatgaatg----aatagatgacaTTC---AATTGTTAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24658233 218 +  33263144 CCTGTAGATTTGTAATTATT-----GTTCCATTTACAGAAATTTGGAGGAAGGTAGAAGTTATTGTCTTGAACCATAAGATGTCTGTTTGAagtcttcgagttcctcagtggtaggctctatatcctgtttacctttgactctct-cagcatagtgcttggaccaaaatggaagctcagcggacactggttgaatgaatg----aatAGATGACATTC---AATTGTTAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1906945 215 -   2117846 CCCATAGATTTGTAATTATT-----GTTTCATTTACAGAAATTTGGAGGAAGGTAGAAGTTACTGTCTTGAAccataagacgtc----tgaagtcttcgagg---tcaaggggaagctctatgttttgttgaccttcgattctct-cagcataatgcttggtccaaaatggaagctcagcagacactggttgaatgaatggatTGATGGATGACATTT---AGTTGTTAGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46061451 222 -  69331447 ccCATAGTTTTGTAATTATTCTTTAGTTACATGCAGAGTAATTTG-AGGACAGTAAAGTCTATTGTCTTGAATCTGGCAATGTCTATTTGATGTCTTCACgcctcttaaaggcagactctatatcctgtttgtctttctctccccatagcatttttcctgaccccaaatggaagctcagcagacactggttcaatggatg--------gatGACACTCAGAAATAGTTAGG
i canFam3.chr10             I 11675 I 726

a score=1055218.000000
s hg38.chr22_GL383582v2_alt     40054 357 +    162811 CTGTGTTCTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAGTAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatactttgggaggccgaggcgggtggatcacttgacgccaggagtttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacctgagaggtggaggttgcagtgagccatgatcatgccactgcactccagcctgggcaacagatcaagactcagtcttaaagacaaaaa
s panTro4.chr22              40852151 357 +  49737984 CTGTGTTCTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAATAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatactttgggaggccgaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacctgagaggtggaggttgcagtgagccacgatcatgccactgcactccagcctgggcaacagatcaagactcagtcttaaagacaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37394257 357 +  46535552 CTGTGTTTTTGTTTTGGATTTAGAAAATATGCTTATTGTGTTATGCAATAAGACTGAGTCTTggctgggtgcagt---ggcttactcctgtaatctcaatactttgggaggccgaggtgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgacaagaccctgtctttactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagccacttggtagcctgaggcatgagaatctcttgaacccgagaggtggaggttgcagtgagccacgatcatgccactgcactccagcctgggtaacagatcaagactcagtcttaaagaaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106599989 356 - 115148730 CTATGTTCTTGTTTTGGATTTAGAAAATATGCGTATTGTGTTATGCAACAAGACTGAGTCTTggctgggtgcagt---ggcttacgcctgtaatctcaatacttcgggaggccgaggtgggtggatcactcgaggccaggagtttgagaccagcctggccaacatgacaagaccctgtcttta-taaaaatacaaaacaactagctgggcatggtgacgcacacctgtaatcccagccactcggtagcctgaggcatgagaatctcttgaacccgagaggtggaggttgcagtgagccatgatcatgccactgcactccagcctgggcaacagctcaagactcagtcttaaagaaaaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913017 360 +  95678458 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatactttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaatgtgacaagaccctgtctctactaaaaatacatcaaaattagctgggcatggtgatgcacacctgtaatcccagctacttggtaacctaaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacaatcatgccgctgtactccagcctgggctacagatcaagacgcagtcttaaaggaagaaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87569607 360 -  96509753 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatactttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcctggccaatgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacaatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82397732 360 +  90941950 CGGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTgagtcttggctgggtgcagtggcggcttatgcctgtaatctcaatactttgggaggccgaggcaggtagatcacttgaggccaggagtttgagaccagcgtggccaacgtgacaagaccctgtctctactaaaaatacaaaaaaattagctgggcatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaatccgagaggcagaggttgcagtgggccatgatcatgccgctatactccagcctgggctacagatcaagactcagtcttaaaggaagaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24658451 360 +  33263144 CAGTGTTCTTGTTTTTGATTTAGAAAATATGCTTATTGTATTATGCAGTGAGACTGAGTCTTggctgggtgcagtggcggcttatgcctgtaatctcaatactttgggaggccgaggcaggtagatcacttgaggccaggagtttgaaaccagcctggccaacgtgacaagaccctgtctctactaaaaatacaaaaaaactagctggacatggtgatgcacacctgtaatcccagctacttggtaacctgaggcatgagaatctcttgaacccgagaggcagaggttgcagtgagccacgatcatgccgctgtactccagcctgggctacagatcaagactcagtcttaaaggaagaaa
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1907160 343 -   2117846 CTGTGTTCTGGTTTTTGATTTAGAAAATATGCTTACTGTGTTATGCAATAAAACTGAGTTTTggctgggtgcagt---ggcttactcctgtaatctcaatactttgggaggccaaggcgggtggatcacttgaggccaggagtttgagaccagcctggccaacatgatgagaccctgtctctactgaaaatacaaaaaa-----ttcggcatggtaatacgtgcttataatcccagctacttgggagcctgaggcatgacaatctcttgaacctgtgaggcagacgttgcctggag---------tgccactgtacgccagcctgggcaacagatcaagactctgtctcaaaaacaaaaa
i calJac3.chrUn_GL286373    C 0 I 16
e canFam3.chr10              46061673 726 -  69331447 I

a score=680.000000
s hg38.chr22_GL383582v2_alt     40411 6 +    162811 aaaaaT
s panTro4.chr22              40852508 4 +  49737984 aaa--T
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37394614 5 +  46535552 aaa-ag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106600345 5 - 115148730 aaa-ag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913377 4 +  95678458 aaa--g
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87569967 4 -  96509753 aaa--g
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82398092 4 +  90941950 aaa--g
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24658811 4 +  33263144 aaa--G
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46061673 726 -  69331447 I
e calJac3.chrUn_GL286373      1907503 16 -   2117846 I

a score=1089000.000000
s hg38.chr22_GL383582v2_alt     40417 387 +    162811 ACTGAGTCTTACACActtttgcatctttgtgtctctatgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaatTGAAACAATGAGATATGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCATTTGACAAGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACACGATGTCACACATAGACACCACTCTCTGTGCGAAAGGGGGGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTCTTGGGTTTGGTCATAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC
s panTro4.chr22              40852512 387 +  49737984 ACTGAGTCTTACACACtcttgcatctttgtgtctctatgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaattgaaacaatGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCATTTGACAAGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACTTGATGTCACACATAGACACCACTCTCCGTGCGAAAGGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTCTTGGGTTTGGTCATAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATGGTAAAAGGATTATCTGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37394619 387 +  46535552 aCTGAGTCTTACACACCTTCGCGTCTTtgtgtctcagtgggtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaattgaaccaaCGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCATTTGACAAGCTGTTCTCGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCGTGCAAAAGGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTCTCGGGTTTGGTCGTAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATATAGTAAAAGGATTATCTGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106600350 385 - 115148730 aCTGAGTCTTACACACCTTTGCGTCTTtgtgtctctatgagtcttcacacagagcttggcacattgtagctgctcagtcagcactgtttgtgctgaattgaaccaatGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCCGAGGCTGTTGACAAGCTGTTCTGGCCAAGGCTGAAGAGGTTGTCCTGTCATAAAGCCCCCCTAAGACATGATGTCACAC--AGACACCACTCTCTGTGCAAAAGGGGAGGCCTGT-GCACTGAACTCCCAGACTTAGCTGGGCCTCAGTGCTCTTGTCGGGTTTGGTCGTAGAGCCCAAGAGGAGGTGGATAAG---CTGCCT-GACACTGATCTGGTAAACGGATTATCTGC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913381 386 +  95678458 aCTGAGTCTTACACACCTTTGTGTCTTtgtgtctctatgggacttcacacagagcttggcatattgtagctgctcaaccagtactgtttgtgctgaatTGAACCAACGAGATACGTACAAAGGGGCTGTCTCTCACTGCTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAAAGGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTCGGGTTTGGTCGTAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87569971 386 -  96509753 aCTGAGTCTTACACACCTTTGTGTCTTTGTGTCTCTATGGGACTTCACACAGAGCTTGGCATATTGTAGCTGCTCAACCAGTACTGTTTGTGCTGAATTGAACCAACGAGGTACGTACAAAGGGGCTGTCTCTCACTGCTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAAAGGGGGGGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTCGGGTTTGGTCGTAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82398096 386 +  90941950 actgaGTCTTACACACCTTTGCGTCTTTGTGTCTCTATGGGACTTCACACAGAGCTTGGCATATTGTAGCTGCTCAACCAGTACTGTTTGTGCTGAATTGAACCAACGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTTCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAAAgggggggCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTCGGGTTTGGTCATAGAGCCCAAGAGGGGGTAGATAAG---CTGCTT-AACACTGATATGGTAAAAGGCTTATCTGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24658815 386 +  33263144 ACTGAGTCTTACACACCTTTGTGTCTTTGTGTCTCTATGGGACTTCACACAGAGCTTGGCATATTGTAGCTGCTCAACCAGTACTGTTTGTGCTGAATTGAAACAACGAGATACGTACAAAGGGGCTGTCTCTCACTACTGGGGATTTAAAGCCACCCTGAGGCATTTGAC-GGCTGTTCTGGCCAAGGTTGAAGAGGTTGTCCTGTCATAAAGTCCCCCTAAGACATGATGTCACACATAGACACCACTCTCCATGCAAAAGGGGGAGCCGGT-GCACTGAACTCCCAGAGTTAGCTGGGCCCCAATGCTCCTCTCGGGTTTGGTCATAGAGCCCAAGAGGGGGTAGATAAG---CTGCCT-GACACTGATATGGTAAAAGGCTTATCTGC
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46062399 389 -  69331447 ACTGAGTCTCACACACCTTTATGTCTTTGCATCCCTATAGGACTTTGCACGTAACTTGACACACCACAAGTGCTTGGGCAGCATTGTTCACATTGAATGGAACTAGAGAGACAGCCACAAAGGTGCTGCCTCAGACTGGTGGGA--TCTAGGCCACTCTGTGGCACTTGACAAACTGCTCTGGCCACGGTTGGAGAGGCTGTCCTGTCATAAAG-CCCCCTAAGACATGATGTCACACACAGACACCTCTCTCCTTACAAAAGGGAGGGGCTGTGGTGTTGGCCTCCCAGACTTAGCTGGGCTCCCGTGCCTTCCTCAGGCTCGGCCCTAGAGCTTGAAGAGAGGTGAGCAGGACACTGCCTGGACGCTGATATGATCAGAGGGTGCTCTGC
i canFam3.chr10             I 726 C 0
e calJac3.chrUn_GL286373      1907503  16 -   2117846 I

a score=32821.000000
s hg38.chr22_GL383582v2_alt     40804 11 +    162811 AAATTTCTAGC
s panTro4.chr22              40852899 11 +  49737984 AAATTTCTAGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395006 11 +  46535552 AAATTTCTAGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106600735 11 - 115148730 AAATTTCTAGC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913767 11 +  95678458 AGATTTCTAGC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87570357 11 -  96509753 AGATTTCTAGC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82398482 11 +  90941950 ACATTTCTAGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659201 11 +  33263144 AAATTTCTAGC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1907519 11 -   2117846 AAATCACTAGC
i calJac3.chrUn_GL286373    I 16 I 1
s canFam3.chr10              46062788 11 -  69331447 AAGTTGCTGAA
i canFam3.chr10             C 0 C 0

a score=650.000000
s hg38.chr22_GL383582v2_alt     40815 1 +    162811 G
s panTro4.chr22              40852910 1 +  49737984 G
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395017 1 +  46535552 A
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106600746 1 - 115148730 A
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913778 1 +  95678458 G
i rheMac3.chr10             C 0 C 0
s papAnu2.chr10              82398493 1 +  90941950 A
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659212 1 +  33263144 G
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46062799 1 -  69331447 A
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1907530 1 -   2117846 I
e macFas5.chr10              87570368 0 -  96509753 C

a score=479294.000000
s hg38.chr22_GL383582v2_alt     40816 238 +    162811 TCATCAAGACTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAATAAACCACCCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTACATCCTTTTCTACTTGACATGCCCCTTCTACTCCTCTT---CTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACTAA
s panTro4.chr22              40852911 238 +  49737984 TCATCAAGACTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAATAAACCACCCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTACATCCTTTTCTACTTGACATGCCCCTTCTACTCCTCTT---CTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGGTGACTAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395018 238 +  46535552 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAATAAACCACCCAAGCAGGTGAAAATTATCTTTTTACCCCAAGCCTACCTTTTCTGCATCCTTTTCTACTTGGCATGCCCCTTCTACTCCTCTT---CTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACTAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106600747 238 - 115148730 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGCTGCCCTCAGTAAACCACCCAAGCAGGTGAAAATTATCTTTTTGCCCCAAGCCTACCTTTTCTGCAACCTTTTCTACTTGGCATGCCCCTTCTACTCCTCTT---CTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCAAGAAAAAGACCTGATAACCTCGCTTACACCGGGTTATAGATGACTAA
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82398494 240 +  90941950 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGATGCCCTCAATAAACCA-CCAAGCAggtgaaaattatctttttaccCCAAGCCTACCTTTTCTGCATCCTTTTCTACTTGGCATGCCccttctactcctcttctcctctcctttaggactcgttctctctcctttcttcctctaaacctcctccCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACCAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659213 240 +  33263144 TCATCAAGGTTGGCCTCTTTGGTAAGCAGGCCTAAAAGGATGCCTTCAATAAACCA-CCAAGCAGGTGAAAATTATCTTTTTACCCCAAGGCTACCTTTTCTGCATCCTTTTCTACTTGGCATGCCCCTTCTACTCCTCTTCTCCTCTCCTTTAGGACTCATTCTCTCTCCTTTCCTCCTCTAAACCTCCTCCCAGAAAAAGACCTGATAACTTCACTTACACCGGGTTATAGATGACCAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1907531 233 -   2117846 TCATCAAGGTTGGCCTCTTTGGCCAGCAGGCCTAAAAGGCTGCACTCAATAAACCACCCAAGCAGATGAA---TTTTTTTTTACCCCAAGCCTACCTTTTCTGCATCCGTTCCTGCTTGGCATG-TCCTTTTGCCCCTCTC---CTCTCCTTTAGGACTCATTC-CTCTCCTTTCCTCCTCTAAACCTCCTCCCACAAAAAAACCTGATAACTTCACTCACACCGAGTTTTAGATAACTAA
i calJac3.chrUn_GL286373    I 1 C 0
s canFam3.chr10              46062800 226 -  69331447 TCACCAAGATTGGC------AGCAAGTGGG-CTCAAAGGCTGCCCTCAGTAGAGCACCTGAGCAGGTGAAAATTGGCTTTACAACTCTTAGcttccctttccccat-ctttcctacctggcat-ccccttttccctctcttcctctctccctcAGGA-----TCTGTTTACTTTCCTCCTCCAGACTGCCTCTCGGAAAAAG-CTGGATAACTTTGCTCACACCAAGGTAGAAATGACTAA
i canFam3.chr10             C 0 I 5009
e macFas5.chr10              87570368   0 -  96509753 C
e rheMac3.chr10              86913779   0 +  95678458 C

a score=526004.000000
s hg38.chr22_GL383582v2_alt     41054 303 +    162811 CAAAGCTTACTATTGAATATGTTGCTAGTAGAAATCTGAATAAGATACAGCAACTTTTCAACTCTGATCATGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTTAGCTCTTGCTGTGTCCCACGCATAGGGGCAGCTACTGGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCAGGGGACAGTACAGTACCCTAAGAGCACTGAGGAGGGCCACCCCACGTGAACTCaggtagtcaggggagccctcctgaaagccatggagaaacacattctag
s panTro4.chr22              40853149 303 +  49737984 CAAAGCTTACTATTGAATATGTTGCTAGCAGAAATCTGAATAAGATACAGCAACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTTAGCTCTTGCTGTGTCCCACGCATAGGGGCAGCTACTGGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCAGGGgacagtacagtaccctaagagcactgaggagggccaccccacctgaactcaggtagtcaggggagccctcctgaaagccatggagaaacacattctag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395256 303 +  46535552 CAAAGCTTACTATTGAATATATTGCTAGCAGAAATCTGAATAGGATACAGCAACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTGAtca----ttcatttggttactgagctcttgctgtgtcccatgcataggggcagctactgggggtttgacagtggacggacctaaagtggtccctcagtcaggggacagtacagtaccctaagagcactgaggcgggccaccccacctgaactcgggtaggcagggaagccttcctgaaagccatggagaaacacattctag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106600985 301 - 115148730 CAAAGCTTACTATTGAATATATTGCTAGCAGAAATCTGAATAAGATACAGCAACTTTTCAACTCTGATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAAtca----ttcatttggttactgagctcttgctgtgtcccacgcataggggcagctactgggggtttgacagtggacagacctaaagtggtccctCagtc--gggacagtacagtaccctaagagcactgaggagggccaccccacctgaactcaggtagtcagggaagccttcttgaaagccatggagaaacacattctgg
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82398734 301 +  90941950 CAAAGCTTACTATTGAATATATTGCTAGCAGAATTCTGAATAAGATACAGCAAC-TTTCAACTCTAATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTGAGCTCTTGCTGTTTCCCACGCATAAGGGCAGCTACTAGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCCTCAGTCA-GGGAGAGTACAGTACCCTAAGAGCCCTGAGGAGGGCCACCCCACCTGAACTCaggtagtcagggaaggcttcctgaaagCCATGGAGAAACACATTCTAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659453 301 +  33263144 CAAAACTTACTATTGAATATATTGCTAGCAGAATTCTGAATAAGATACAGCAAC-TTTCAACTCTAATCAGGGCTTTAAGCACTAGGATGAACCACAGCCATGTAATCA----TTCATTTGGTTACTGAGCTCTTGCTGTTTCCCACGCATAAGGGCAGCTACTAGGGGTTTGACAGTGGACGGACCTAAAGTGGTCCctcagtca-gggacagtacagtaccctaagagccctgaggagggccaccccacctgaactcaggtagtcagggaaggcttcctgaaagCCATGGAGAAACACATTCTAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1907764 303 -   2117846 CAAAGCTTACTATTAAATATATTGCTAGCAGGGCTCTGAGTAAGGGACAGCAACTTTTCAAGTCTGATCAGGGCTTTAAGTGCTAGGATGAGCCACAGTCATGTAATCATTTGTTCATTTGGTTACTGAGCTCTTGCTGTGTCCCATG----AGGGCAGCTACTGGGGATTTGACAGTGGATGGGCCTAAAGTGGTCTCTCAGTCAGGAGATGGTACAGTACCCTAAAAGCACTGAAGAGGGCTACCCTACGTGACCTCGggcagtgagggaagccttcccgaaagccatggagaagcacgttctag
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46063026 5009 -  69331447 I
e macFas5.chr10              87570368   0 -  96509753 C
e rheMac3.chr10              86913779   0 +  95678458 C

a score=2800.000000
s hg38.chr22_GL383582v2_alt     41357 1 +    162811 g
s panTro4.chr22              40853452 1 +  49737984 g
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395559 1 +  46535552 g
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106601286 1 - 115148730 g
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87570368 1 -  96509753 G
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82399035 1 +  90941950 G
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659754 1 +  33263144 G
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1908067 1 -   2117846 g
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46063026 5009 -  69331447 I
e rheMac3.chr10              86913779 0 +  95678458 C

a score=316823.000000
s hg38.chr22_GL383582v2_alt     41358 150 +    162811 tagataacagcacatgcaaaggcctagaagt--gagtg--------------tctgaggtgGAAGTTCAGAGTCTTTGTCGTCAGCAG---GACATGGAGCAACACTTGACACTGAGATTTAGGCagagagagacagagagacaaagagagatagagagacagaaacag
s panTro4.chr22              40853453 140 +  49737984 tagataacagcacatgcaaaggcctagaagt--gagtg--------------tctgaggtgGAAGTTCAGAGTCTTCGTCGTCAGCAG---GACATGGAGCAACACTTGACACTGAGATTTAGGCagagagaga----------aagagagatagagagacagaaacag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395560 114 +  46535552 tagagaacagcacatgcaaaggcctagaagt--gagtg--------------tctgaggtgGAAGTTTGGAGTCTTTGTCGTCAGCAG---GACATGGAGCAACAC-TGACACTGAGATTTAGGCagagagaga-----------------------------------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106601287 121 - 115148730 tagagaacagcacatgcaaaggcctagaagt--gagtg--------------tctgaggtgGAAGTTCAGAGTCTTTGTCATCAGCAG---GACATGGAGCAACAC-TGACActgagatttaggcagagacaga----------------------------cagacag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913779 125 +  95678458 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTG--------------TCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAA--TGACATTGAGATTTAGGCagagagaga--------------------------cagagagag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87570369 125 -  96509753 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTG--------------TCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAA--TGACATTGAGATTTAGgcagagagaga--------------------------cagagagag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82399036 135 +  90941950 TAGacaacagcacatgcaaaggcctAGAAGT--GAGTGTCTGAGGTGGAACTTCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGAAAAA--TGACATTGAGATTTAggcagagagaga--------------------------t----agag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659755 125 +  33263144 TAGACAACAGCACATGCAAAGGCCTAGAAGT--GAGTG--------------TCTGAGGTGGAAGTTCAGAGTCTTTGTCGTCAGCAGCAAGACATGGAGCAAAA--TGACATTGAGATTTAGgcagagagaga--------------------------cagagagag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1908068 146 -   2117846 tagagaacagcatgtgcaaaggcctagaagtgagagtg--------------tctgaggtgAAAGTTCAGAGTCTCTGTTGTCAGCAGCAGGACATGGAGCAACAC-TGACATTGAGATTTAGGCAGAGGGAGA--------GAGAGACAGACAGAGAGACAGGGGTAG
i calJac3.chrUn_GL286373    C 0 I 600
e canFam3.chr10              46063026 5009 -  69331447 I

a score=2882361.000000
s hg38.chr22_GL383582v2_alt     41508 1381 +    162811  
s panTro4.chr22              40853593 1334 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37395674 1284 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106601408 1309 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86913904 1353 +  95678458  
i rheMac3.chr10             C 0 I 7
s macFas5.chr10              87570494 1357 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82399171 1355 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24659880 1348 +  33263144  
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46063026 5009 -  69331447 I
e calJac3.chrUn_GL286373      1908214  600 -   2117846 I

a score=89510.000000
s hg38.chr22_GL383582v2_alt     42889 58 +    162811 tgagctggg---atcacgccactgcactccagcctgagtgacacagcaagactctgtcttt
s panTro4.chr22              40854927 58 +  49737984 tgagctggg---atcacgccactgcactccagcctgagtaacacagcaagactctgtcttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37396958 46 +  46535552 --------------cacgccactgcactccagcctgagtgacacagcaagactctgt-ttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106602717 58 - 115148730 tgagctggg---atcacgccactgcactccagcctgagtgacacagcaagactctgtctta
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87571851 58 -  96509753 tgagcagtg---atcactccactgcactccagcctgagtgacacagcaagactctgtctta
i macFas5.chr10             C 0 I 20
s papAnu2.chr10              82400526 61 +  90941950 tgagcagtgatcatcacttcactgcactccagcctgagtgacacagcaagactctgtcttt
i papAnu2.chr10             C 0 I 10
s chlSab2.chr19              24661228 58 +  33263144 tgagcagtg---atcactccactgcactccagcccgagtgacacagcaagactctgtctta
i chlSab2.chr19             C 0 I 2
e canFam3.chr10              46063026 5009 -  69331447 I
e calJac3.chrUn_GL286373      1908214 600 -   2117846 I
e rheMac3.chr10              86915257  7 +  95678458 I

a score=2812298.000000
s hg38.chr22_GL383582v2_alt     42947 1235 +    162811  
s panTro4.chr22              40854985 1229 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37397004 1236 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106602775 1184 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86915264 1277 +  95678458  
i rheMac3.chr10             I 7 C 0
s macFas5.chr10              87571929 1276 -  96509753  
i macFas5.chr10             I 20 C 0
s papAnu2.chr10              82400597 1274 +  90941950  
i papAnu2.chr10             I 10 C 0
s chlSab2.chr19              24661288 1276 +  33263144  
i chlSab2.chr19             I 2 C 0
e canFam3.chr10              46063026 5009 -  69331447 I
e calJac3.chrUn_GL286373      1908214  600 -   2117846 I

a score=2391706.000000
s hg38.chr22_GL383582v2_alt     44182 911 +    162811  
s panTro4.chr22              40856214 911 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37398240 891 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106603959 908 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86916541 904 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87573205 904 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82401871 904 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24662564 904 +  33263144  
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46068035 883 -  69331447  
i canFam3.chr10             I 5009 C 0
e calJac3.chrUn_GL286373      1908214 600 -   2117846 I

a score=31081.000000
s hg38.chr22_GL383582v2_alt     45093 20 +    162811 t--tatat----tttttat-ttttaag
s panTro4.chr22              40857125 20 +  49737984 t--tatat----tttttat-ttttaag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37399131 17 +  46535552 -----tat----tttttat-ttttaag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106604867 22 - 115148730 ttatatat----atatttt-ttttaag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86917445 21 +  95678458 t--tatgt----tatttttattttaag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574109 21 -  96509753 t--tatgt----tatttttattttaag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82402775 21 +  90941950 t--tatgt----tatttttattttaag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663468 16 +  33263144 t--tatgt----tat-----ttttaag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1908814 20 -   2117846 t--tttat----tttctgt-ttttaag
i calJac3.chrUn_GL286373    I 600 C 0
s canFam3.chr10              46068918 24 -  69331447 t--tctatcatatttttgt-ttttaag
i canFam3.chr10             C 0 I 149

a score=681642.000000
s hg38.chr22_GL383582v2_alt     45113 233 +    162811 gcaaggtctttctctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagctt--tgttcctggactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggtgtgtgccaccacacccagccagtattttaattttttgtagagatggggtctccttaggtggcccaggctggtgttgaattcctaggctcaaacaatcctcctgccttagcc
s panTro4.chr22              40857145 233 +  49737984 gcaaggtctttctctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagctt--tgttcctgcactcaagtgatcctcccacctcagcctcccaagcagccggaactacaggtgtgtgccaccacacccagccaatattttaattttttgtagagatggggtctccttaggtggcccaggctggtgttgaactcctaggctcaagcaatcctcctgccttagcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37399148 233 +  46535552 gcaaggtctttctctgttgcccagcctggagtgcagtggcacaatcacagttcactgcagcct--tgttcccggattcaagtgatcctcccacctcagcctcccaagcagatggaactacaggtgtgtgccaccacacccagccactattttaattttttgtagagatggggtctccttaggtggcccaggctggtgttgaactcctaggctcaagcaatcctcctgccttagcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106604889 233 - 115148730 gcaaggtctttttctgttgcccaggctggagtgcagtggcacgatcacagttcactgcagcct--tgttcctggactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggtgtgtgccacaacacccagccagtattttaattttttgtagagatggggtctccttaggtggcccaggctagtgttgaactcctaggctcaagcaatcctcctgccttagcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86917466 230 +  95678458 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--tgttctcagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagacagggt---cttaggtggcccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574130 230 -  96509753 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--tgttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagacagggt---cttaggtggcccagactgatgttgaactcctaggctcaaacagtcctcctgccttagcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82402796 230 +  90941950 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--tgttcccagactcaagtgatcctcctgcctcaacctcccaagcagctggaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagacagggt---cttagGTGGCCCAGACTGAtgttgaactcctaggctcaaacagtcctcctgccttagcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663484 230 +  33263144 gcaaggtctctttctgttgcccaggctggagtgcagtggcaggatcatagttcactgcagcct--tgttcccagactcaagtgatcctcctgcctcaacctcccaagcagctgaaactacaggtgtgtgccaccacacccagctagtatttcaattttttgtacagacagggt---cttaggtggcccagactgatattgaactcctaggctcaaacagtcctcctgccttagcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1908834 231 -   2117846 gcagagtc----tctgttgcccaggctggagtacagtggcataatcatagctcactgcagcctcatactcccagactcaagtgatcctcccacctcagcctcccaagcagctggaactacaggcgtgtgcccccacacctggctcatattttaattttttgtagagacagggtcttcttatgttgctcaggctggtcttgaactcctagactcaagcagccctcctgccttatcc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46068942 149 -  69331447 I

a score=398456.000000
s hg38.chr22_GL383582v2_alt     45346 125 +    162811 tcccaaaatgctgggattacaggcatgagctaaggcacccagactatatttttgtcaagaattagtggtggtgggtgtttgaacatttttattttagaccctcctattcttatttcatgaatgca
s panTro4.chr22              40857378 125 +  49737984 tcccaaaatgctgggattacaggcatgagctaaggcacccagactatatttttgtcaagaattagtggtggtgggtgtttgaacatttttattttagaccctcctattcttatttcatgaatgca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37399381 125 +  46535552 tcccaaaatgctgggattgcaggcatgagctaaggcacccagactatatttttgtcaagaattactggtggtgggtgtttgaacatttttattttagagcctcctattcttatttcatgaatgca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106605122 125 - 115148730 tcccaaaatgctgggattacaggcatgagctaaggcacccagactatatttttgtcaagaattagtggtggtgggtgtttgaacatttttattttagagcctcctattcttatttcatgaatgca
i nomLeu3.chr7b             C 0 I 314
s rheMac3.chr10              86917696 125 +  95678458 taccaaaatgctgggattacaggcatgagctgcagcatctagactatatttttgtcaagaattagtggtggtgggtgtttgaacatttttattttagagcctcctattcttatttcatgaatgga
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574360 125 -  96509753 taccaaaatgctgggattacaggcatgagctgcggcatctagactatatttttgtcaagaattagtggtggtgggtgtttgaacatttttattttagagcctcctattcttatttcatgaatgga
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82403026 125 +  90941950 taccaaaatgctgggattacaggcatgagctgcggCATCTAGACTATATTTTTGTCAAGAATTAGTGGTGGTGGgtgtttgaacatttttattttagagcctCCTATTCTTATTTCATGAATGGA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663714 125 +  33263144 taccaaaatgctgggattacaggcgtgagctgcggcacctagactatatttttgtcaagaattagtggtggtgggtgtttgaacatttttattttagaacctcctattcttatttcatgaatgga
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1909065 124 -   2117846 tcccaaaatgctgggattacaggcatgagctactgtaccgagactatatttttatcaagaattagtggtggtgagtgtgcgaaca-ttttattttagaacctcctgttctcatttcatgaatgta
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46069091 112 -  69331447 tcccaggaccctgggat------catgatctgagcca---aaggcagatgtttaaccc-actgagtcacccaggctccctgaacatctctgttttagag---tctattcttgtttcatgaatgct
i canFam3.chr10             I 149 C 0

a score=86716.000000
s hg38.chr22_GL383582v2_alt     45471 23 +    162811 aagttttatctttctaaagatat
s panTro4.chr22              40857503 23 +  49737984 aagttttatctttctaaagatat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37399506 23 +  46535552 aagttttatctttctgtagatat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106605561 23 - 115148730 aagttttatctttctaaagatat
i nomLeu3.chr7b             I 314 C 0
s rheMac3.chr10              86917821 23 +  95678458 aagttttatctttctaaagatat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574485 23 -  96509753 aagttttatctttctaaagatat
i macFas5.chr10             C 0 I 331
s papAnu2.chr10              82403151 23 +  90941950 AAGTTTTATCTTTCTAAAGATAT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663839 23 +  33263144 aagttttatctttctaaagatat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1909189 23 -   2117846 aagttttatctttctgaagatgc
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46069203 23 -  69331447 aagttttaactttctaaagacat
i canFam3.chr10             C 0 C 0

a score=43392.000000
s hg38.chr22_GL383582v2_alt     45494 20 +    162811 caattatA--GAtttttttttt
s panTro4.chr22              40857526 22 +  49737984 caattatatAGAtttttttttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37399529 20 +  46535552 caattatA--GAtttttttttt
i ponAbe2.chr22             C 0 I 12485
s nomLeu3.chr7b             106605584 18 - 115148730 caattatA--GAtttttttt--
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86917844 20 +  95678458 caattatA--GAtttttttaaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574839 20 -  96509753 CAATTATA--GAtttttttaaa
i macFas5.chr10             I 331 C 0
s papAnu2.chr10              82403174 20 +  90941950 caattata--gattttttaaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663862 20 +  33263144 caattata--gatttttttaaa
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1909212 20 -   2117846 caattatA--GAtttttttttt
i calJac3.chrUn_GL286373    C 0 I 4
s canFam3.chr10              46069226 12 -  69331447 cagttatt--gttt--------
i canFam3.chr10             C 0 C 0

a score=40488.000000
s hg38.chr22_GL383582v2_alt     45514 22 +    162811 aa-gacagtttcactcttgttga
s panTro4.chr22              40857548 23 +  49737984 aaagacagtttcactcttgttga
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106605602 22 - 115148730 aa-gagagtttgactcttgttga
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86917864 22 +  95678458 aa-gacagtttcactcttgttga
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574859 22 -  96509753 aa-gacagtttcactcttgttga
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82403194 22 +  90941950 aa-gacagtttcactcttgttga
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663882 22 +  33263144 aa-gacagtttcactcttgttga
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1909236 22 -   2117846 ga-gagtgtttcactcttaatgc
i calJac3.chrUn_GL286373    I 4 C 0
s canFam3.chr10              46069238 12 -  69331447 ------ACTTTAACTTTT-----
i canFam3.chr10             C 0 C 0
e ponAbe2.chr22              37399549 12485 +  46535552 I

a score=2303087.000000
s hg38.chr22_GL383582v2_alt     45536 818 +    162811  
s panTro4.chr22              40857571 818 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37412034 807 +  46535552  
i ponAbe2.chr22             I 12485 C 0
s nomLeu3.chr7b             106605624 804 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86917886 801 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87574881 803 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82403216 788 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24663904 804 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1909258 822 -   2117846  
i calJac3.chrUn_GL286373    C 0 I 313
s canFam3.chr10              46069250 559 -  69331447  
i canFam3.chr10             C 0 C 0

a score=111667.000000
s hg38.chr22_GL383582v2_alt     46354 38 +    162811 CCTTTCTGCC--CAGTCTGCCCTCTT-ATTCCTCCTGCAGG
s panTro4.chr22              40858389 38 +  49737984 CCTTTCTGCC--CAGTCTGCCCTCTT-ATTCCTCCTGCAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37412841 40 +  46535552 CCTGTCTGCCCACAGTCTGCCCTCTT-ATTCCTCCTGCAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106606428 40 - 115148730 CCTTTCTGCCCACAGTCTGCCCTCTT-ATTCGTCCTGCAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86918687 40 +  95678458 CCTTTCTGCCCACAGTCTGCCCTCTT-ATTCCTCCTGCAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87575684 40 -  96509753 CCTTTCTGCCCACAGTCTGCCCTCTT-ATTCCTCCTGCAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82404004 40 +  90941950 CCTTTCTGCCCACAGTCTGCCCTCTT-ATTCCTCCTGCAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24664708 40 +  33263144 CCTTTCTGCCCACAGTCTGCCCTCTT-ATTCCTCCTGCAGG
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46069809 41 -  69331447 CCCTTCTGCCCATATCCCGCCCTCCTGACCCCCCTTGCAGG
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1910080 313 -   2117846 I

a score=4084395.000000
s hg38.chr22_GL383582v2_alt     46392 1339 +    162811  
s panTro4.chr22              40858427 1326 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37412881 1332 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106606468 1334 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86918727 1394 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87575724 1324 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82404044 1332 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24664748 1350 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1910393 1240 -   2117846  
i calJac3.chrUn_GL286373    I 313 C 0
s canFam3.chr10              46069850 1253 -  69331447  
i canFam3.chr10             C 0 I 572

a score=10318.000000
s hg38.chr22_GL383582v2_alt     47731 4 +    162811 GAAG
s panTro4.chr22              40859753 4 +  49737984 GAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414213 4 +  46535552 GAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106607802 4 - 115148730 GAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920121 4 +  95678458 GAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577048 4 -  96509753 GAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405376 4 +  90941950 GAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666098 4 +  33263144 GAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1911633 4 -   2117846 AAAG
i calJac3.chrUn_GL286373    C 0 I 9144
e canFam3.chr10              46071103 572 -  69331447 I

a score=165526.000000
s hg38.chr22_GL383582v2_alt     47735 54 +    162811 GTCTGCCCAGGACTCAGGTAATCATATGCTCATTAGAAACTCTTGGGCACTGCC
s panTro4.chr22              40859757 54 +  49737984 GTCTGCCCAGGACTCAGGTAATCATATGCTCATTAGAAACTCTTGGGCACTGCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414217 54 +  46535552 GTCTGCCCAGGACTCAGGTAAtcatatgctcattagaaactcttgggcactgcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106607806 54 - 115148730 GTCTGCCCAGGACACAGGTAATCAGATGCtcattagaaactcttgggcactgcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920125 54 +  95678458 GTCTGCCCAGGACTCAGGTAAGCAGATGCtcattagaaactcttgggcactgcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577052 54 -  96509753 GTCTGCCCAGGACTCAGGTAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405380 52 +  90941950 GTCTGCCCAGGACTCAGGTAAGCAGATGCTCATTAGAAA--CTTGGGCACTGCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666102 54 +  33263144 GTCTGCCCAGGACTCAGGTAAGCAGATGCTCATTAGAAACTCTTGGGCACTGCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1920781 53 -   2117846 GTCTGCCCAGGACTCAGGTAAGCAGATGCTCGTTAGAAAC-CTTGAGCACTGCC
i calJac3.chrUn_GL286373    I 9144 T 9197
e canFam3.chr10              46071103 572 -  69331447 I

a score=2548.000000
s hg38.chr22_GL383582v2_alt     47789 1 +    162811 T
s panTro4.chr22              40859811 1 +  49737984 T
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414271 1 +  46535552 t
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106607860 1 - 115148730 t
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920179 1 +  95678458 t
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577106 1 -  96509753 T
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405432 1 +  90941950 T
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666156 1 +  33263144 T
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I
e calJac3.chrUn_GL286373      1920834 9197 -   2117846 T

a score=1038482.000000
s hg38.chr22_GL383582v2_alt     47790 412 +    162811 GTGTG-----CCCAGCCCAGCCCATTATGTCGGTGAGGACAGACGTGGAGGACAGCAGTCCCTGCCCTTGGTTGGG------GCTCCAGGCCAGCAAGGGCCACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCGGGGCAGGTGAAGCAGCCTTCTCGTTGGCAGAAGGGAAACAGAAGCCCggggtggggaagggtggggaagggtggggaagggtgggcccggggtcacacggggtaatggcagagcaaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctccttctctgccCGCCCCAGTGCCTTATGGGTCCAAGGTTGACTCCTGTCCCTAGGGCAG---------------------------------------GCCTGTGGGCCCT-GCCTGATCCC--TACTGGGAGGATGGTACCTAGGGTTGGAGCCAAA-CAAGTG
s panTro4.chr22              40859812 392 +  49737984 GTGTG-----CCCAGCCCAGCCCATTATGTCGGTGAGGACAGACGTGGAGGACAGCAGTCCCTGCCCTTGGTTGGG------GCTCCAGGCCAGCAAGGGCCACAGCCCCagaaggcagagcaggaagacaggactcggggcaggtgaagcagccttctcgttggcagaagggaaacagaagccc--------------------agggtggggaagggtgggcccggggtcacacggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctcctcctctgccCGCCCCAGTGCCTTATGGGTCCAAGGTTGACTCCTGTCCCTAGGGCAG---------------------------------------GCCTGTGGGCCCT-GCCTGATCCC--TACTGGGAGGATGATACCTAGGGTTGGAGCCAAA-CAAGTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414272 393 +  46535552 gtgtg-----cccagcccagcccattatgtcagtgaggactgacgtggaggacagcggtccctgcctttggttggg------gctccaggccagcaagggccacagCCCCagaaggcagagcaggaagacaggactcatggcagctgaagcagccttctcattggcagaagggaaacagaagccc--------------------agggtggggaagggtgggcccggggtcacacggggtaagggcagagccaggact------agggtcagggtctc----tggctctcagc-tccccatgccaccacctcctcctctgCCCGCCCCAGTGCCTCATGGGCCCAAGGTTGACTCCTGTCCCTAGGGCAG---------------------------------------GCCTGCGGGCCCTGGCCTGACCCC--TACTGGGAGGATGGCACCTAGGGTTGGGGCCCAA-CAAGTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106607861 393 - 115148730 gtgtg-----cccagcccagcccattatgtcagtgaggacaaacgtggaggacagtggtccctgcccttggttggg------gctccaggccagcaagggccacagccccagaaggcagagcaggaagacaggacttggggcaggtgaagtagccttctcattggcagaagggaaacagaagccc--------------------agggtggggaagggcaggcccagggtcacacggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagc-tgcccatgccacctcctcctcctctgccCACCCCAGTGCCTCATGGGTCCAAGGTTGACTCCTGTAGCTATGGCAG---------------------------------------GCCTGTGGGCCCTGGCCTGACCCC--TACCGGGAGGATGGCACCTAGGGTTGGAGCCCAA-CAAGTG
i nomLeu3.chr7b             C 0 I 12162
s rheMac3.chr10              86920180 416 +  95678458 gtgtg-----cccagcccagcccattatgtcggtgaggacagacatagaggacagcggtccctgcctttggt--gg------gctccaggccagcaagggctacagCCCCAGAAGGCAGAGCAGGAAGACAGGACTCAGGACAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAAACAGAAgccc-----------------------------------------agggtcacatggggtaatggcagagccaggactagggtcagggtcagggtctc----tggctctcagcttgcccatgccaccacctcctcctctgCCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCT-GTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577107 416 -  96509753 GTGTG-----CCCTGCCCAGCCCATTATGTCGGTGAGGACAGACATAGAGGACAGCGGTCCCTGCCTTTGGT--GG------GCTCCAGGCCAGCAAGGGCTACAGCCCCAGAAGGCAGAGCAGGAAGACAGGACTCAGGGCAGCTGAAGTAGCCTTCTCATTGGCAGAAGGGAAACAGAAgccc-----------------------------------------agggtcacatggggtaatggcagagccaggactagggtcagggtcagggtctc----tggctctcagcttgcccatgccaccacCTCCTCCTCTGCCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-GTACCGGGAGGATGGCACCTAGAGTTGGAGCCCAG-CAAGTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405433 397 +  90941950 gtgtg-----cccagcccagcccattATGTCGGTGAGGACAGA-------------GGTCCCTGCCTTTGGT--GG------GCTCCAGGCCAGCAAGGGCTACAGCCCCAGAAGGCAGAGCAGGAAGATAGGACTCAGGGCAGCTGAAGCAGCCTTCTCATTGGCAGAAGGGAAACAGAAGCCC-----------------------------------------AGGGTCACATGGGgtaatggcagagccaggact------aggGTCAGGGTCTC----TGGCTCTCAGCTTGCCCatgccaccacctcctcctctgcCCGCCCCAGTGCCTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-CTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666157 415 +  33263144 GTGTGCCCAACCCAGCCCAGCCCATTATGTCGGTGAGGACAGACATAGAGGACAGCGGTCCCTGCCTTTGGT--GG------GCTCCAGGCCAGCAGGGGCTACAGCCCCagaaggcagagcaggaagacaggactcagggcagctgaagcaaccttctcattggcagaagggaaacagaagccc-----------------------------------------agggtcacatggggtaatggcagagccaggact------agggtcagggtctc----tggctctcagcttgcccatgccaccaccacCTCCTCTGCCTGCCCCAGTGCTTCATAGGCCCAAGGTTGACTCCTGTCCCTAGGGCAGGCCTGTGGCCCACAGGGCTCATGCATGGCCCCTGGCCAAGCCTGTGGGCCCT-GCCTGACCCC-CTACCGGGAGGATGGCACCTAGGGTTGGAGCCCAG-CAAGTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1911637 416 -   2117846 GTGTG-----CCCAGCCCAGCCAGTTGTGGTGCTGAGGACAGACGGGGAG---AGAGGTTTCTACCTTCTGTGGGGGCTTCAGCTCCAGACCAGCAAGGGCCAAAGCCCCagaaggcaaagcagaaagacaggactcaggacacctgaagcagccttcttactggcagaa-ggaaacagaagccc--------------------agggtggggaggggcaggcccagggtcacactgggtagtggcagagccaggact------agggtcagagtctctaattaattctcagc-cACCCATGCCACCA---CCTCCTCTGTTCACCCCAGTGCCTCATGGGTCCAAGGTTGACCCTTGTTCCTAGGACAGGCCTGTTGCCCCCAGGGCTCATGCAC--------------------GGCCCT-GCCTGACCCAGCCACTGGGAGAATGGC-CCTAGGGTCGGAGCCCAGACAAGCA
i calJac3.chrUn_GL286373    T 9197 C 0
e canFam3.chr10              46071103 572 -  69331447 I

a score=5998.000000
s hg38.chr22_GL383582v2_alt     48202 3 +    162811 TCC
s panTro4.chr22              40860204 3 +  49737984 TCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414665 3 +  46535552 TCC
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86920596 3 +  95678458 TTC
i rheMac3.chr10             C 0 I 44
s macFas5.chr10              87577523 3 -  96509753 TTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405830 3 +  90941950 ttc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666572 3 +  33263144 TTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912053 3 -   2117846 TCC
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I
e nomLeu3.chr7b             106608254 12162 - 115148730 I

a score=2910.000000
s hg38.chr22_GL383582v2_alt     48205 3 +    162811 TCC
s panTro4.chr22              40860207 3 +  49737984 TCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414668 3 +  46535552 TCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106620416 3 - 115148730 TCC
i nomLeu3.chr7b             I 12162 C 0
s calJac3.chrUn_GL286373      1912056 3 -   2117846 TCC
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I
e chlSab2.chr19              24666575 0 +  33263144 C
e papAnu2.chr10              82405833 0 +  90941950 C
e macFas5.chr10              87577526 0 -  96509753 C
e rheMac3.chr10              86920599 44 +  95678458 I

a score=12774.000000
s hg38.chr22_GL383582v2_alt     48208 7 +    162811 TCCAGCG
s panTro4.chr22              40860210 7 +  49737984 TCCAGCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414671 7 +  46535552 TCCAGCG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106620419 7 - 115148730 TCCAGCG
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87577526 7 -  96509753 TCCAGCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405833 7 +  90941950 tccagct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666575 7 +  33263144 TTCAGCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912059 7 -   2117846 TCAAGCT
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I
e rheMac3.chr10              86920599 44 +  95678458 I

a score=59113.000000
s hg38.chr22_GL383582v2_alt     48215 20 +    162811 CCAGCCTGGCCCTGAGTGCG
s panTro4.chr22              40860217 20 +  49737984 CCAGCCTGGCCCTGAGTGCG
i panTro4.chr22             C 0 I 12462
s ponAbe2.chr22              37414678 20 +  46535552 CCAGCCTGGCCCCGAGTGCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106620426 20 - 115148730 CCAGCCTGGCCCTGAGTGCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920643 20 +  95678458 CCAGCCTGGCCCCGAGGGCA
i rheMac3.chr10             I 44 C 0
s macFas5.chr10              87577533 20 -  96509753 CCAGCCTGGCCCCGAGGGCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405840 20 +  90941950 ccagcctggccCTGAGGGCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666582 20 +  33263144 CCAGCCTGGCCCCGAGGGCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912066 20 -   2117846 CCAGCCTGGCCCCAAGTGGA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I

a score=210289.000000
s hg38.chr22_GL383582v2_alt     48235 71 +    162811 AACTCGTCACTGGTCAGGGGTCCAGACAGCAGCATCCCTGAGGGCCCAGAGAGGTGGCCAGTCCTGTGGTG
s panTro4.chr22              40872699 71 +  49737984 AACTCGTCACTGGTCAGGGGTCCGGACAGCAGCATCCCTGAGGGCCCAGAGAGGTGGCCAGTCCTGTGGTG
i panTro4.chr22             I 12462 C 0
s ponAbe2.chr22              37414698 71 +  46535552 AACTCGTCATTGGTCAGGGGTCCGGACAGCAGCATCCTTGAGGGCCCAGAGAGGTGGCCAGTCCTGTGGTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106620446 71 - 115148730 AACTTGTCACTGGTCAGGGGTCCGGATAGCAGCATCCCTGAGGGCCCAGAGAGGTGGCCAGTCCTGTGGTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920663 71 +  95678458 AACTTGCCACTGGTCAGGGGTCTGGACAGCGGCATGTCTGAGGACCCAGAGAGGTGGCCAGTCGTGTGGTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577553 71 -  96509753 AACTTGCCACTGGTCAGGGGTCTGGACAGCGGCATGTCTGAGGACCCAGAGAGGTGGCCAGTCGTGTGGTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82405860 71 +  90941950 AACTTGCCACTGGTCAGGGGTCTGGACAGCGGCATGTCTGAGGACCCAGAGAGGTGGCCAGTCGTGTGGTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666602 71 +  33263144 AACTCGCCACTGGTCAGGGGTCTGGACAGCGGCATGTCTGAGGACCCAGAGAGGTGGCCAGTCGTGTGGTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912086 71 -   2117846 AACTTGTCACTGGTCAGGCGTCTGGACAGCAGCATCCTTGAGGAGCTGGAGAGGTGGCCAGTCCCATGGTG
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I

a score=5075.000000
s hg38.chr22_GL383582v2_alt     48306 4 +    162811 AGGT
s panTro4.chr22              40872770 4 +  49737984 AGGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414769 4 +  46535552 AAGT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106620517 4 - 115148730 AGGT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920734 4 +  95678458 AGGT
i rheMac3.chr10             C 0 I 47
s chlSab2.chr19              24666673 4 +  33263144 AGGT
i chlSab2.chr19             C 0 I 5
e canFam3.chr10              46071103 572 -  69331447 I
e calJac3.chrUn_GL286373      1912157 0 -   2117846 C
e papAnu2.chr10              82405931 0 +  90941950 C
e macFas5.chr10              87577624 0 -  96509753 C

a score=738511.000000
s hg38.chr22_GL383582v2_alt     48310 1558 +    162811  
s panTro4.chr22              40872774 1582 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37414773 1509 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106620521 1561 - 115148730  
i nomLeu3.chr7b             C 0 C 0
e canFam3.chr10              46071103  572 -  69331447 I
e calJac3.chrUn_GL286373      1912157    0 -   2117846 C
e chlSab2.chr19              24666677    5 +  33263144 I
e papAnu2.chr10              82405931    0 +  90941950 C
e macFas5.chr10              87577624    0 -  96509753 C
e rheMac3.chr10              86920738   47 +  95678458 I

a score=14133.000000
s hg38.chr22_GL383582v2_alt     49868 7 +    162811 AGGTGAC
s panTro4.chr22              40874356 7 +  49737984 AGGTGAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416282 7 +  46535552 AGGTGAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622082 7 - 115148730 AGGTGAC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87577624 7 -  96509753 AGGTGAC
i macFas5.chr10             C 0 I 2
s papAnu2.chr10              82405931 7 +  90941950 AGGTGAC
i papAnu2.chr10             C 0 I 2
s calJac3.chrUn_GL286373      1912157 7 -   2117846 AGGTGAC
i calJac3.chrUn_GL286373    C 0 I 2
e canFam3.chr10              46071103 572 -  69331447 I
e chlSab2.chr19              24666677 5 +  33263144 I
e rheMac3.chr10              86920738 47 +  95678458 I

a score=62697.000000
s hg38.chr22_GL383582v2_alt     49875 28 +    162811 AGGCTGAGGGCGGTGGCTCGGTCCTGGG
s panTro4.chr22              40874363 28 +  49737984 AGGCTGAGGGCGGTGGCTCGGTCCTGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416289 28 +  46535552 AGGCTGAGGGTGGTGGCTCGGTCCCAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622089 28 - 115148730 AGGCTGAGGGCCGCGGCTCGGTCCTGGG
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87577633 28 -  96509753 AGGCTGAGGACGGTGGCTTAGTCCCGGG
i macFas5.chr10             I 2 C 0
s papAnu2.chr10              82405940 28 +  90941950 AGGCTAAGGACGGTGGCTTAGTCCTGGG
i papAnu2.chr10             I 2 C 0
s chlSab2.chr19              24666682 28 +  33263144 AGGCTGAGGGCGGTGGCTTAGTCCTGGG
i chlSab2.chr19             I 5 I 14
s calJac3.chrUn_GL286373      1912166 28 -   2117846 AGGCTGAGGGTGATGGCTCAGTCCTGGG
i calJac3.chrUn_GL286373    I 2 C 0
e canFam3.chr10              46071103 572 -  69331447 I
e rheMac3.chr10              86920738 47 +  95678458 I

a score=6102.000000
s hg38.chr22_GL383582v2_alt     49903 6 +    162811 TTTTCC-
s panTro4.chr22              40874391 6 +  49737984 TTTTCC-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416317 6 +  46535552 TTTTCC-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622117 6 - 115148730 TTTTCC-
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87577661 5 -  96509753 -CTTCC-
i macFas5.chr10             C 0 I 9
s papAnu2.chr10              82405968 5 +  90941950 -CTTCC-
i papAnu2.chr10             C 0 I 1
s calJac3.chrUn_GL286373      1912194 6 -   2117846 -CTTCCA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I
e chlSab2.chr19              24666710 14 +  33263144 I
e rheMac3.chr10              86920738 47 +  95678458 I

a score=302012.000000
s hg38.chr22_GL383582v2_alt     49909 107 +    162811 TGGGGCCTT----CCCAGGGAATGTTCTGGCACCTGCCGACTGAGCCCTGGGAGGTAGCCCTGGCATATAGCTCCCTGA-----CATGATTTGTCTTCCATTTTGGGGTGTCATAT
s panTro4.chr22              40874397 110 +  49737984 TGGGGCCTT----CCCAGGGAATGTTCTGGCACCTGCCGACTGAGCCCTGGGAGGTAGCCCTGGCATATAGCTCCCTGA--TGCCATGATTTGTCTTCCGTTTTGGGGTGTCATAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416323 110 +  46535552 TGGGGCCTT----CCCAGGGAACGTTCTGGCCCCTGCTGACTGAACCCTGGGAGGTAACCCTGGCATATAGCTCCCTGA--TGCCATGATTTGTCTTCCTTTTTGGGGTGTCATAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622123 110 - 115148730 TGGGGCCTT----CCCAGGGAACTTTCTGGCACCTGCTGACTGAACGCTGGGCGGTAACGCTGGCATATAGCTCCCTGA--TGCTATGATTTGTCTTCCTTTTTGGAGTGTCATAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920785 109 +  95678458 TGGGGCCTT----CCCAGGGAACGTTCTGGCACCTGCTGACTGAGGTCTGGGAGGTAGCCCTGGCATAT-AGTCCCTGA--TGCCATGATTTGTCTTCCTTTTTGGAGTGTCACAT
i rheMac3.chr10             I 47 C 0
s macFas5.chr10              87577675 109 -  96509753 TGGGGCCTT----CCCAGGGAACGTTCTGGCACCTGCTGACTGAGGTCTGGGAGGTAGCCCTGGCATAT-AGTCCCTGA--TGCCATGATTTGTCTTCCTTTTTGGAGTGTCACAT
i macFas5.chr10             I 9 C 0
s papAnu2.chr10              82405974 114 +  90941950 TGGGGCCTTGGGCCCCAGGGAACGTTCTGGCACCTGCTGACTGAGCTCTGGGAGGTAGCCCTGGCATATAAGTCCCTGA--TGCCATGATTTGTCTTCCTTTTTGGAGTGTCATAT
i papAnu2.chr10             I 1 C 0
s chlSab2.chr19              24666724 110 +  33263144 TGGGGCCTT----CCCAGGGAACGTTCTGGCACCTGCTGACTGAGCTCTGGGAGGTAGCCCTGGCATATAAGTCCCTGA--TGCCATGATTTGTCTTCCTTTTTGGAGTGTCATTT
i chlSab2.chr19             I 14 C 0
s calJac3.chrUn_GL286373      1912200 112 -   2117846 TGGGTCCTT----CCCAGTGAACGTTCTGGCAGCTGCCGACTGAACCCTGGGAAGTGACCCTGGCACAAAGCTCCCTGACTCTCCATGATTTGTCTTTTATTTTGGGGTGTCATAT
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46071103 572 -  69331447 I

a score=223570.000000
s hg38.chr22_GL383582v2_alt     50016 74 +    162811 ATGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGTCCC-TGATGTGGGGTGGGCTGAGTTAGGCCT
s panTro4.chr22              40874507 74 +  49737984 ATGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGTCCC-TGATGTGGGGTGGGCTGAGTTAGGCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416433 74 +  46535552 ATGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGCCCC-TGATGTGGGGTGGGCTGAGTTAGGACT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622233 74 - 115148730 AGGAAGGGAGGTGACTGTTGTGATGGTGCTGGCAGGACTGCTGCCCC-TGATGTGGGGTGGGTTGAGTTAGGCCT
i nomLeu3.chr7b             C 0 I 313
s rheMac3.chr10              86920894 74 +  95678458 ATGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGCTGAGTTAGGCCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577784 74 -  96509753 ATGAAAGGAGGTAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGCTGAGTTAGGCCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406088 73 +  90941950 ATGAAA-GAGGTAACTGTTGTGATGGTGCTGGTGGGACCGCTGCCGC-TGATGGAGGGTGGGCTGAGTTAGGCCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666834 74 +  33263144 ATGAAAGGAGATAACTGTTGTGATGGTGCTGGCGGGACCGCTGCCCC-TGATGGGGGGTGGGCTGAGTTAGGCCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912312 60 -   2117846 -------------ACTGTTGTGATGGTGCTGGTGGGACCACTGCCCC--AATGTAGGGTAGACTGAGTCGGGCCT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46071675 75 -  69331447 ATAGGGGAATGCGATAGAGGAGTTGGTGCCGGCCGAGCTGCTGGCCCGTGGGGTGGGGTGGGCGGTGTTGGACCT
i canFam3.chr10             I 572 C 0

a score=4500.000000
s hg38.chr22_GL383582v2_alt     50090 1 +    162811 G
s panTro4.chr22              40874581 1 +  49737984 G
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416507 1 +  46535552 G
i ponAbe2.chr22             C 0 I 307
s nomLeu3.chr7b             106622620 1 - 115148730 g
i nomLeu3.chr7b             I 313 C 0
s rheMac3.chr10              86920968 1 +  95678458 G
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577858 1 -  96509753 G
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406161 1 +  90941950 G
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666908 1 +  33263144 G
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912372 1 -   2117846 G
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46071750 1 -  69331447 G
i canFam3.chr10             C 0 C 0

a score=654075.000000
s hg38.chr22_GL383582v2_alt     50091 233 +    162811 AAATATGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACATCCAGGGCTGACTG---ACACCTCTAGTCAGCCCATTCTGGCCCCTT-CCCCACATGCCAGGAC---AATGT--AGTCCTTGTCACCAATCTGGGCAGTC-AGAGTTGGG--TCAGTGGGGGACATGGGATTATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACGTACCC-----GTCTCAAATGC-----GGCCAGGCGGTGGGGTAAG
s panTro4.chr22              40874582 235 +  49737984 AAATATGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACATCCAGGGCTGACTG---ACACCTCTAGTCAGCCCATTCTGGCCCCTT-CCCCACATGCCAGGAC---AATGT--AGTCCTTGTCACCAATCTGGGCAGTC-AGAGTTGGG--TCAGTGGGGGACATGGGATTATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACGTACCC---CTGTCTCAAATGC-----GGCCAGGCGGTGGGGTAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37416815 236 +  46535552 aaaTGTGGGCCTCCAGGCTGAGTCCTGCCCTTTCCACCACACTCAGGGCTGACTG---ACACCTCGAGTCAGTCCATTCCGGCCCTTT-CCCCAGATGCCAGGAC---AGTGT--AGTCCTTGTCACCAATCTGGGCAGTCAAGAGTTGGG--ACAGTGGGGGACATGGGATTATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACATACCC---CTGTCTCAAACGT-----GGCCAGGCGGTGGGGTAAG
i ponAbe2.chr22             I 307 C 0
s nomLeu3.chr7b             106622621 233 - 115148730 aaaTGTGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACATCCAGGGCTGACTG---ACACCTCTAGTCAGTCCATTCTGGCCCCTT-CCCCAGATGCCAGGAC---AATGT--AGTCCTTGTCACCAATCTGAGCAGTC-AGAGTTGGG--TCAGTGGGGGACATGGGATTATGGGCAAGGGTAACTGACATCTGCTCAGCCTCAACATACCC-----GTCTCAAACGT-----GGCCAGGCAGTGGGGTAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86920969 225 +  95678458 AAATGTGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACACTCAGGG----CTG---ACACCTCTAGTCAGCCCATTCTGGCTCCTTCCCCCAGATGCCAGAAC---AATGT--AGTTCTTGTCACCAATCTGGGC-----AGAGTTGGG--TCAGT-GGGGACATGGGATTATGGGCAAGGCTAGCTGACATCTGCTCAACCTCAACATACCT-----GTCTCAAACGC-----GGCCAGGTGGTGGGGTAAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87577859 225 -  96509753 AAATGTGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACACTCAGGG----CTG---ACACCTCTAGTCAGCCCATTCTGGCTCCTTCCCCCAGATGCCAGAAC---AATGT--AGTTCTTGTCACCAATCTGGGC-----AGAGTTGGG--TCAGT-GGGGACATGGGATTATGGGCAAGGCTAGCTGACATCTGCTCAACCTCAACATACCT-----GTCTCAAACGT-----GGCCAGGTGGTGGGGTAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406162 226 +  90941950 AAATGTGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACACTCAGCG----CTG---ACACCTCTAGTCAGCCCATTCTGGCTCCTTCCCCCAGATGCCAGAAC---AATGT--AGTTCTTGTCACCAATCTGGGC-----AGAGTTGGG--TCAGTGGGGGACATGGGATTATGGGCAAGGCTAGCTGACATCTGCTTAACCTCAATATACCC-----GTCTCAAACGC-----GGCCAGGTGGTGGGGTAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24666909 226 +  33263144 AAATGTGGGCCTCCAGGCTGAGTCCTGCCCTCTCCACCACACTCAGGG----CTG---ACACCTCTAGTCAGCCCATTCTGGCTCCTTCCCCCAGATGCCAGAAC---AATGT--AGTTCTTGTCACCAATCTGGGC-----AGAGTTGGG--TCAGTGGGGGACGTGGGATTATGGGCAAGGCTAGCTAACATCTGCTCAACCTCAACATACCC-----GTCTCAAACGC-----GGCCAGGTGGTGGGGTAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912373 234 -   2117846 AATTGTGGGCCTCCAGGCTGAGTACTGCCCTCTCCGCCACACCCAGGGCTGACTGACAACACCTCTAGTCAGCCCACTCTGGCCCCTT-CCCTAGAAGCTGGGAC---AACGTACAGTTCGTGTCACCAGTC----------AGAGATGGG--TCAGTGGGGGAC--GGGATTAGGGCCAAGGCCAGCTGACACATGCTCAATCTCCACACACCC---CTGTCTCAAACATGGCCAGGCCAGGCGTTGGGGTAAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46071751 221 -  69331447 AGATGCGGGTGTCCAGGCTGAGCGGGGTCCTCTCAGCCCCACTAGGGCCCAGCTG---AGGGCTCTCAGCAGCTTGTTCTAGATCTTCCCGCCACGAACAAGGACCTAAATAT--AGACATGGTCACTAACC-AAGTAGCC-AGTATTGGGGCTCTGTGGGCAACTAGGG-----------GGTGAGCTTCCATCTTCTGACCCTCGGCAGACCTCATCTGTCCAAGATAG-----GG-------ATGGAG----
i canFam3.chr10             C 0 C 0

a score=118950.000000
s hg38.chr22_GL383582v2_alt     50324 36 +    162811 CAGGAATGAGGCAGGGGTGGGGTTGCCCTGAGGAGG
s panTro4.chr22              40874817 36 +  49737984 CAGGAATGAGGCAGGGGTGGGGTTGCCCTGAGGAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417051 36 +  46535552 CAGGAATGAGGCAGGGGTGGAGTTGCCCTGAGGAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622854 36 - 115148730 CAGGAATGAGGCAGGGGTGCGGTTGCCCTGAGGAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921194 36 +  95678458 CAGGAATGAGGCAGGGGTGGGACTGCCCTGGGGAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578084 36 -  96509753 CAGGAATGAGGCAGGGGTGGGACTGCCCTGGGGAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406388 36 +  90941950 CAGGAATGAGGCAGGGGTGGGACTGCCCTGGGAAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667135 36 +  33263144 CAGGAATGAGGCAGGGGTGGGACTGCCCTGGGGAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912607 35 -   2117846 CAGGAATGAGGCA-GGGTGGGGCTGCCCTCGGGAGG
i calJac3.chrUn_GL286373    C 0 I 22
s mm10.chr15                 82777813 23 + 104043685 CAGGATTGAGACAAGGAAGGGGG-------------
i mm10.chr15                N 0 C 0
s canFam3.chr10              46071972 31 -  69331447 CAGGCTGGGGTCAGGGCTGGG-----TCTGGGGAGG
i canFam3.chr10             C 0 C 0

a score=38514.000000
s hg38.chr22_GL383582v2_alt     50360 21 +    162811 -----ATGATCCC-----AACGAGGGCGTGA
s panTro4.chr22              40874853 21 +  49737984 -----ATGATCCC-----AACGAGGGCGTGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417087 21 +  46535552 -----ATGATCCC-----AACGAGGGCGTGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622890 21 - 115148730 -----ATGATCCC-----AACGAGGGCGTGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921230 21 +  95678458 -----ACGTTCCC-----AACCAGGGCCTGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578120 21 -  96509753 -----ACGTTCCC-----AACCAGGGCCTGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406424 21 +  90941950 -----ATGTCCCC-----AACCAGGGCCTGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667171 21 +  33263144 -----ACGTTCCC-----AACCAGGGCCTGG
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82777836 11 + 104043685 -----ATGAACCT---------------TGA
i mm10.chr15                C 0 C 0
s canFam3.chr10              46072003 31 -  69331447 CCGCTGCGGCCCCTTCGCCACCGGCGGCTGG
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1912642 22 -   2117846 I

a score=1706223.000000
s hg38.chr22_GL383582v2_alt     50381 448 +    162811 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATTAG-AGCCTCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGAAAGCTGACGACACGAGAGTGGCTGGGCCGGGGCTGTCCGGCGGCCACGGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCTGGGTGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG
s panTro4.chr22              40874874 448 +  49737984 GCAGGGGAC-----------------CCGAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGGGTCACCAGGAAAGCAAAGACACCATGGTGGCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCTGGGTGATAC----CCGTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGTGGAAGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417108 448 +  46535552 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGATCACCAGAAAGCTGACAACGCGAGAGTGGCTGGGCTGGGGCTGTCCAGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCTGGGCGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106622911 448 - 115148730 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-AGCCCCTGGCTAGGGAGCAGCCTGGAAACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGGGTCACCAGAAAGCTGACGACACGAGAGTGGCTGGGCCGGGGCTGTCCGGCGGGCACTGAGAAGCTGAAGCCTTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGA-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCCAGGCGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCTGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921251 453 +  95678458 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGGAAAGCAAAGACACCATGGTGGCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGGGGAGGGG-TGTCAGTGAGCCTGCCTCCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578141 453 -  96509753 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGGAAAGCAAAGACACCATGGTGGCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGGGGAGGGG-TGTCAGTGAGCCTGCCTCCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406445 448 +  90941950 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACCTCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGGAAAGCAAAGACACCATGGTGGCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCaggtgaagaagaggaagagctcCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGgcctgt-----ggggaggggagggg-tgtcaGTGAGCCTGCCTCCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCTGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGAAAGTGTTCGGGGTGGAAGCGGAAGGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667192 448 +  33263144 GCAGGGGAC-----------------CCAAGTTGGAACTACCACATTGCTTTATTGTACATCAG-GGCCCCTGGCTAGGGAGCAGGCTGGGGACTAGG------------TACCCCATTCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGGAAAGCAAAGACACCATGGTGGCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGGGGAGGGG-TGTCAGTGAGCCTGCCTCCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTCGGGGTGGAAGCGGAAGGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1912664 447 -   2117846 GCAGGGGAC-----------------CCAGGTTGGAACTACCACATTGCTTTATTGCACACCAG-GGCCCCTGGCTAGGGAGCAGGCTGAGGACTAGG------------TACCCTGTTCTAGCGGGGCACAGCACAAAGCTCATAAGGGGAAGGGGTCACCAGGAAAGCAAAGACACCGTGAGGGCTGGGCCGGGGCTGTCCAGCGGGCACAGAGAAGCTGAAGCGCTGTAGCAGGCAGGTGAAGAACAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTAGGGGAGGGG-CCTCAGTGAGCATGGGTCCTGGGCGATAC----CCCTGCAAGACTCCATGGAA-GGGACAGGGAGCCAGGCACCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTCAGGGTGGAAGCGGAAGGG
i calJac3.chrUn_GL286373    I 22 C 0
s mm10.chr15                 82777847 444 + 104043685 ----GTTAT-----------------CTGAGTTGCAGACACAGGACTCATTTATTGGACATCAATAAACCCAAACTGGGGAAAAGACTG-GAACCACT------------GACCC--TTCTAGCGAACCACTGCACAGAGCTGGTAGGGTGCTGGACTAACTAAAATTGAGTAGATGCCATAATCACTGGGCTGGGGCTGTCCATCCGGTACTGAGAAGCTAAAGCGCTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGACTCCCCCAGGCATGATCTGCGGCCTGT-----GGGTGGGATAGGG---CTCAGTCTGACTGGGAACTGATTGGTGCTCCACCCTCCAAAGATTTCTAGGGATAGATAGGCAGACAAGCACCCCAGAGATACCTGCTGAGAATGGCATGAAGGCCTCAGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTCAGGATGGAAGCGGAGGGG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46072034 470 -  69331447 TCAGGGGGCCCTGAGGGACTCGGAAGCCAGGATGGAGCCACCAAACTGGTTTATTGTACCTCGG----CCCCTGCTGAGGAgccggggggggggggggggccggTGGTAATTCCTTCCCCTAGGGAGGGTCCCCCCAAAACTGGAAAGGGGCTGGAACCTTTCGGAAGGGGAAAACCCCCTGGTCCCTGGGCCCGGGCTTCCCCCCAGGGCCTGAAAAACTTAAACCCTTCCGGAGGGAGGGGAAAAAAAAGAAAAACTCCCTGCGGGCCAGGGGCTCCCCCAAGGAAAACCGGCGGCCTTC-----GGGTGGGGAAAGAACCCCCAAAAAACCCGGGGCCTGGGCCCAAC----CTC--CAAAAATCCCTCTGAAGGGGTGGGAAACCGGGGACCCCCC---CACCTTCAAAAAAAGGCATTAAGGCCCTATGCTTGAAAAAAAGGCCCTGGGGGTCCCAGAAATGCTCCGGGTAAAAACGGAAAGG
i canFam3.chr10             C 0 M 283

a score=386895.000000
s hg38.chr22_GL383582v2_alt     50829 108 +    162811 CTTCTTCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGATGAGTGTCGTTCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACTGGACTCTAGGATGCT---
s panTro4.chr22              40875322 108 +  49737984 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGATGAGTGTCGTTCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACTGGGCTCTAGGATGCT---
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417556 108 +  46535552 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGGGCGAGAGTGGGGACTGGGCTCTAGGATGCT---
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623359 108 - 115148730 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGTGTCGTCCCCTGGGCAGGAGATGCAGGGCGAGAGTGGGGACTGGGCTCTAGGATGCT---
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921704 108 +  95678458 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGAGTGAGAGTGGGGACTGGGCTCTAGGATGGT---
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578594 108 -  96509753 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGAGTGAGAGTGGGGACTGGGCTCTAGGATGGT---
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82406893 108 +  90941950 CTTCTCCCAGACGGCCTCATCCTTCAGCACTGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACTGGGCTCTAAGATGTT---
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667640 108 +  33263144 TTTCTCCCAGACGGCCTCATCCTTCAGCACCGTTGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCATGGTGAGAGTGGGGACGGGGCTCTAAGATGTT---
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913111 108 -   2117846 CTTCTCCCAGTTGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTTGTCCCCTGGGCAGGAGATGCAGGGTGGCAGTGGGGACTGGGCTCTACGATGCT---
i calJac3.chrUn_GL286373    C 0 I 17008
s mm10.chr15                 82778291 105 + 104043685 CTTCTCCCAGACAGTCTCATCCTTCAGCACAGAGGACAGGTTGGGGATGAGGGTCGTCCCCT-GGCAGGAGGTACATGGTGTGAATATGGACAGGGT-----GAGGCTTAC
i mm10.chr15                C 0 C 0
e canFam3.chr10              46072504 283 -  69331447 M

a score=151900.000000
s hg38.chr22_GL383582v2_alt     50937 47 +    162811 GGGACCCCTGCCACCAAACACACGGGGGACACACACTGCCTGGCACA
s panTro4.chr22              40875430 47 +  49737984 AGGACCCCTGCCACCAAACACATGGGGGACACACACTGCCTGGCACA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417664 47 +  46535552 GGGACCCCTGCCACCAAACACACGGGGGACACACACTGCCTGGCACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623467 47 - 115148730 GGGACCCCTGCCACCAAACACACGGGGGACATACACTGCCTGGCACA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921812 47 +  95678458 GGGACCCCTGCCACCAAACGCACGGGGGACACACACTGCCTGGCACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578702 47 -  96509753 GGGACCCCTGCCACCAAACGCACGGGGGACACACACTGCCTGGCACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407001 47 +  90941950 GGTACCCCTGCCACCAAACACATGGGGGAcacacactgcctggcaca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667748 45 +  33263144 GGGACCCCTGCCACCAAACACACGGGGG--ACACACTACCTGGCACA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930227 47 -   2117846 GGGACCCCTGCCACCAAACACATGGGGGATACACATTGCCCGGCACA
i calJac3.chrUn_GL286373    I 17008 T 17055
s mm10.chr15                 82778396 42 + 104043685 TAGACTCTAGTCACCAAGTTCATAGG-----TACAGGCTCTACCACA
i mm10.chr15                C 0 C 0
e canFam3.chr10              46072504 283 -  69331447 M

a score=23204.000000
s hg38.chr22_GL383582v2_alt     50984 16 +    162811 -CAGCTGGACTCTGTCA
s panTro4.chr22              40875477 16 +  49737984 -CAGCTGGACTCTGTCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417711 16 +  46535552 -CTGCTGGACTCTGTCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623514 16 - 115148730 -CAGCTGGACTCTGTCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921859 14 +  95678458 -CAGCTGGACTC--TCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578749 14 -  96509753 -CAGCTGGACTC--TCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407048 14 +  90941950 -cagctggACTC--TCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667793 14 +  33263144 -CAGCTGGACTC--TCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913219  2 -   2117846 ---------------CA
i calJac3.chrUn_GL286373    T 17055 C 0
s mm10.chr15                 82778438 17 + 104043685 CACTCTAGATGCTTTCA
i mm10.chr15                C 0 I 63
e canFam3.chr10              46072504 283 -  69331447 M

a score=30587.000000
s hg38.chr22_GL383582v2_alt     51000 12 +    162811 A--CTAGTCCTGCG
s panTro4.chr22              40875493 12 +  49737984 A--CTAGTCCTGCG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417727 12 +  46535552 A--CTAGTCCTGTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623530 12 - 115148730 A--CTAGTCCTGTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921873 12 +  95678458 A--CTAGTCCTGCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578763 12 -  96509753 A--CTAGTCCTGCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407062 12 +  90941950 A--CTAGTCCTGCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667807 12 +  33263144 A--CTAGTCCTGCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913221 14 -   2117846 ACTCTAGTTCTTCA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82778455 63 + 104043685 I
e canFam3.chr10              46072504 283 -  69331447 M

a score=176786.000000
s hg38.chr22_GL383582v2_alt     51012 56 +    162811 CCCGAGAAGCTCCACAGTACCCTCTCCGACCCCACAGCAGGGCGCAGTCACACCTC
s panTro4.chr22              40875505 56 +  49737984 CCCGAGAAGCTCCACAGTACCCTCTCCGACCCCACAGCAGGGCGCAGTCACACATC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417739 56 +  46535552 CCTGAGAAGCTCCACAGTACCCTCTCCGACTCCATAGCAGGGCACAGTCACACCTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623542 56 - 115148730 GCCAAGAAGctcctgagctccctctctgaccctatggtggggagcagtcacacctc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921885 56 +  95678458 CCTGAGAAGCTCCTGAGCACCCTCTATGACCCCATGGCAGGGCGCAGTCACACCTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578775 56 -  96509753 CCTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407074 56 +  90941950 CCTGACAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667819 56 +  33263144 CCTGAGAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACACCTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913235 56 -   2117846 TCTAAGAAGCTCCTGGGCACCCACTCTGACCCCATAGCAGGTCCCAGTCACATCTC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46072787 56 -  69331447 CCCCAGAAGCTCCTGGGCACCCTCTCTGTCCCCATGGCAGGGCTAAGGGACTCCCC
i canFam3.chr10             M 283 I 2
e mm10.chr15                 82778455 63 + 104043685 I

a score=134054.000000
s hg38.chr22_GL383582v2_alt     51068 46 +    162811 TCAGAGGCACCCACACTGCCCCCTCTCCCTGCAGGCGCTGGGTCCT
s panTro4.chr22              40875561 46 +  49737984 TCAGAGGCACCCACACTGCCCCCTCTCCCTGCAGGCGTTGGGTCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37417795 46 +  46535552 TCAGAGGCACCCACACTGCCCCCTCTCCCTGCAGGCATTGGGTCCT
i ponAbe2.chr22             C 0 I 1013
s nomLeu3.chr7b             106623598 37 - 115148730 ccgggggcacctaagctgccccctttctctacaggca---------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921941 46 +  95678458 TCAGGGGCACCCACACTGCCCCCTCTCCCTACAGGCATTGGGTCGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578831 46 -  96509753 TCAGGGGCACCCACGCTGCCCCCTCTCCCTACAGGCATTGGGTCGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407130 46 +  90941950 TCAGGGGCACCCACGCTGCTCCCTCTCCCTACAGGCATTGGGTCGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667875 45 +  33263144 TC-GGGGCACCCACGCTGCTCCCTCTCCCTACAGGCATTGGGTCGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913291 46 -   2117846 CTGGGGGTGCCCACACTGCCCCCTCTCCCTACAGGTGTGGGGTCCT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82778518 46 + 104043685 TGAGAGATGTCCACACTATCACATGTATTTGTAGGTAGTGGCTGTT
i mm10.chr15                I 63 I 1
s canFam3.chr10              46072845 44 -  69331447 CCACGGGCGCCCACACGGCCACCCGTCCCTGT--GCACAGGCTCCT
i canFam3.chr10             I 2 C 0

a score=2012.000000
s hg38.chr22_GL383582v2_alt     51114 2 +    162811 CC
s panTro4.chr22              40875607 2 +  49737984 CC
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106623635 1 - 115148730 -c
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921987 2 +  95678458 CC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578877 2 -  96509753 CC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407176 2 +  90941950 CC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667920 2 +  33263144 CC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913337 2 -   2117846 CC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82778565 1 + 104043685 T-
i mm10.chr15                I 1 C 0
s canFam3.chr10              46072889 2 -  69331447 CC
i canFam3.chr10             C 0 C 0
e ponAbe2.chr22              37417841 1013 +  46535552 I

a score=2692940.000000
s hg38.chr22_GL383582v2_alt     51116 785 +    162811  
s panTro4.chr22              40875609 794 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37418854 795 +  46535552  
i ponAbe2.chr22             I 1013 C 0
s nomLeu3.chr7b             106623636 795 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86921989 798 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87578879 798 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407178 792 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24667922 792 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1913339 793 -   2117846  
i calJac3.chrUn_GL286373    C 0 I 17062
s mm10.chr15                 82778566 797 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46072891 726 -  69331447  
i canFam3.chr10             C 0 C 0

a score=78066.000000
s hg38.chr22_GL383582v2_alt     51901 25 +    162811 AACGGGGTAGCCCCCAAATGACCTC
s panTro4.chr22              40876403 25 +  49737984 AACGGGGTAGCCCCCAAATGACCTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37419649 25 +  46535552 AACGGGGAAGCCCCCAAATGACCTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106624431 25 - 115148730 AGCGGGGAAGCCCCCAAATGACCTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86922787 25 +  95678458 ATTGGGGTAGCCCCCTAATGACCTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87579677 25 -  96509753 ATTGGGGTAGCCCCCTAATGACCTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407970 25 +  90941950 ATTGGGGTAGCCCCCTAATGACCTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24668714 25 +  33263144 ATTGGGGTAGCCCCCTAATGACCTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1931194 25 -   2117846 AGGGGGAAAGTCCCCAAATGACCTC
i calJac3.chrUn_GL286373    I 17062 C 0
s mm10.chr15                 82779363 23 + 104043685 ACTAGAG--GGCCCATAACACCCTC
i mm10.chr15                C 0 I 53
s canFam3.chr10              46073617 25 -  69331447 AGGGAGAGAGCCCCCGGATGGCCTC
i canFam3.chr10             C 0 C 0

a score=34074.000000
s hg38.chr22_GL383582v2_alt     51926 13 +    162811 CAATTCTGCACCT
s panTro4.chr22              40876428 13 +  49737984 CAATTCTGCACCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37419674 13 +  46535552 CCATTCTTTATAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106624456 13 - 115148730 CCATTCTTTATCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86922812 13 +  95678458 CCATTCTGTACCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87579702 13 -  96509753 CCATTCTGTACCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82407995 13 +  90941950 CCATTCTGTACCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24668739 13 +  33263144 CCATTCTGTACCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1931219 13 -   2117846 CTATTCTGCACCT
i calJac3.chrUn_GL286373    C 0 T 17100
s canFam3.chr10              46073642 12 -  69331447 CCACCCTGCACC-
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82779386 53 + 104043685 I

a score=236372.000000
s hg38.chr22_GL383582v2_alt     51939 105 +    162811 GTCAGCCCAGATGCGGCTCGCCGGGTGATGCACTGGTCCAACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGACGTTCAACCCACCACCCTTGCCCCCCACCG
s panTro4.chr22              40876441 105 +  49737984 GTCAGCCCAGATGCGGCTCGCCGGGTGATGCACTGGCCCAACC--TTTTGCCCAGCCTCCCCTCATTTCTCCTGGGACACTCAACCCACCACCCTTGCCCCTCACCG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37419687 104 +  46535552 GTCAGCCCAGGTGCGACTCACCAGGTGTTCCAACGGCCCCACCTTTTTTGCCCAGCCTCCCCTCATTCCTCCCGGGAGCCTCAACTCACCACCCGTACC---CACCG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106624469 104 - 115148730 GTCAGCCCAGGTGCCACTCACCAGGTGATCCAATGGACCCACCTTTTTTGCCCAACCTCCCCTCATTCCTCCCGGGAGCTTCAACCCACCACTGGTACC---CACCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86922825 103 +  95678458 ATCAGCCCAGATGCTGCTTGCCGG--GATGCCCTGGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGATGCTCAATCCACCACCCTTGCTCCCTACCG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87579715 103 -  96509753 ATCAGCCCAGATGCTGCTTGCCGG--GATGCCCTGGCCCCACC--TTTTGCCCAGCCTCCCCTCATTCCTCCTGGGATGCTCAATCCACCACCCTTGCTCCCTACCG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82408008 103 +  90941950 ATCAGCCCAGATGCTGCTTGCTGG--GATGCCCTGGCCCCACC--TTTTGCCCAGTCTCCCCTCATTCCTCCTGGGATGCTCAATCCACCACCCTTGCTCCCCACCG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24668752 103 +  33263144 GTCAGCCCAGAGGCTGCTTGCCAG--GATGCCCTGGCCCCACC--GTTTGCCCAGCCTCCCTTCATTCCTCCTGGGATGCTCAATCCACCACCCTTGGTCCCCACCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1914132 105 -   2117846 GTCAACCCAGGTGCTGCTTGCAGGGTGATGCACCAGCCCCAAC--TTTTGCCTGGCCACTCCTCATTGTTCTCTGGACCCTCAACCCACCATCCCTGCTCCCCACCC
i calJac3.chrUn_GL286373    T 17100 C 0
s canFam3.chr10              46073654  75 -  69331447 ------------------CACTGGGTGATACAC-GGCCCCACC----TTCGTGGGCCT-------TGGTTCTTGGGGCCCTCATCCCGCAACCATTGTCCCGGAC--
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82779386  53 + 104043685 I

a score=823465.000000
s hg38.chr22_GL383582v2_alt     52044 208 +    162811 TGGCAGCCACTCTCACCTTCTCCTTCTTTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTTAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTTTTGGAAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGTGCGGGAGGACGGGGACAGCATTCAGCACCTACACCAG--ACAGAA
s panTro4.chr22              40876546 208 +  49737984 TGGCAGCCGCTCTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGGGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTTAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTTTTGGAAGCGTAGGACCTTGCCAGCCAGCGCTGGGATGTGCAGGAGGACGGGGATGGCATTCAGCACCTACACCAG--ACAGAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37419791 210 +  46535552 TGTCAGCCGCTCTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTTAGGTCTCGGGGTGGCTGGGCTGGGTTCCAGATCATCCTGTGCTCAGTCAGCAGCTCATCCAGCTGGGCCAGGAAAGCCTTTTGGGAGTGTAAGACCTTGCCAGCCACCCCGGGGATGTGCAGGAGGACGGGGATGGCATTTAGCACCTGCACCAGACACAGAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106624573 210 - 115148730 TGTCAGCTGCTCTCACCTTATCCATCTCTGCCAGGAAGGCATCAGTCAGGTCTTGGGGTGGCTGGGCTGGGTTCCAGATCATCCTGTGCTTAGTCAGCAGCTCACCCAGCTGGGCCAGGAAAGCCTTTTGGGAGTGTAAGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGACGGGGATGGCATTCAGCACCTGCACTAGACACAGAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86922928 210 +  95678458 TGGCAGCCGCTCTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCCAGCTGGGTCAGGAAAGCCTTTTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGAGGGGGACGGCATTCAGCACCTACACCAGACACAGAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87579818 210 -  96509753 TGGCAGCCGCTCTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGCTGGGTCAGGAAAGCCTTTTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGAGGGGGACGGCATTCAGCACCTACACCAGACACAGAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82408111 210 +  90941950 TGGCAGCCGCTCTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGCTGGGTGAGGAAAGCCTTTTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGCGCAGGAGGAGGGGGATGGCATTCAGCACCTACACCAGACACAGAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24668855 210 +  33263144 TGGCAGCCGCTCTCACCTTCTCCATCTCTGCCAGGAAGGCCTCAGTCAGGTCTCGGGGTGGCTGGGCTGGATCCCAGGTCATCCTGTGCTCGGTCAGCAGCTCATCTAGCTGGGTCAGGAAAGCCTTTTGGGAGCGTAGGACCTTGCCAGCCAGCCCAGGGATGTGCAGGAGGAGGGGGATGGCATTCAGCACCTACACCAGACACAAAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1914237 210 -   2117846 TGGCAGCTGCTCCCACCTTCTCCATCTCTGCCAGAAAGGCTTCAGTCAGGTCTCGGGGTGGCTGGGCTGGGTCCCAGGTCATCCTGTGCTCAGTCAGCAGCTCATCCAGCTGGGCCAGGAAAGCCTTTTGGGAGCGTAAGACCTTGCCAGCCAGCCCCGGGATGCGCAGAAGGACAGGGATGGCATTCAGCACCTGCACCAGACACAGAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82779439 210 + 104043685 GGACACCAGTTCTCACTTTCTCCATCTCAGCCAGAAAGGCATCAATCAAATCTCGAGGTGGCTGGTCAGGGTCCCAGGTCCTCTTGTGCTCAGTCAACAGCTTATCCACCATGGTGAGAAATGTCGTTTGCCCAGGGAAGATTTTATCAGCCAACCCTGGGATGCGCAGGACAATTGGGAACATCTTCACAACCTGGAACAGCCATAGAA
i mm10.chr15                I 53 I 134
s canFam3.chr10              46073729 199 -  69331447 ---------TCCTCACTTTTTCTATCTCATCCACGAAGGCGTCGATCAGGTGTCGGGGTGGCTGGGTGGGGTCCCGGGTCTTCCTGTGCTCCTGGATCATTTCATTTGTCAGGGTTATGAAGGCCTTCTGCGCGGAGAAGACCTTGCTGGCCAGTCCCGGGATGTGCAGGAGCACGGGGATGGAGTTCAGGGCCTGCG--GGGTGCAGAT
i canFam3.chr10             C 0 C 0

a score=689280.000000
s hg38.chr22_GL383582v2_alt     52252 282 +    162811 CGGGGTCTCA--------------------------------------------------------------------------------------------ATCCCTCC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCCATCTCCA-GGAAGACCCAGGGCCTGCCTGTCC-TTACCACTGACCTCACCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCT-----CTCTCTCCTTGCCC------------AGAGGAGAAACCT-------AAAATCGAAATC---------TCCAACGTGGAC-GGGGGTACAGAGTCCTTGGCCTCTCCTGGTGCCCCCTGACCCGG--------------GCACACCTCTCCCACGACCATGTCTGAGATGT-------CCCCTCCTCCTCCAGGCC
s panTro4.chr22              40876754 280 +  49737984 CGGGGTCTGA--------------------------------------------------------------------------------------------ATCCCTCC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCCATCTCCA-GGAACACCCAGGGCCTGCCTGTCC-TTACCACTGACCTCCCCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCC-------------GAGGAGAAACCT-------AAAATCGAAATC---------TCCAACATGGACAGGGGGTACAGAGTCCTTGGCCTCTCCTGGTGCCCCCTGACCTGG--------------GCACACCTCTCCCACGACCATGTCTGAGATGT-------CCCCTCCTCCTCCAGGCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37420001 287 +  46535552 TGGGGTCTGG--------------------------------------------------------------------------------------------ATCCTTTC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCCACCTCCAGGGAAAACCCAGGGTCTGCCTGTCC-TCAAAACTGATCTCCCCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCCTGGG--CTG-CCAGAGGAGAAACCT-------AAAATC-AAATC---------TCCAATGTGGACAGGAGACACAGGGTCCTTGGGCTCTGTTGGTG-CCCCTGACC-GG--------------GCACACCTCTCCCACGACCATGTCTGAGATGT--------CCCTCCTCCTCAAGGCC
i ponAbe2.chr22             C 0 T 14882
s nomLeu3.chr7b             106624783 291 - 115148730 CGGGGTCTGG--------------------------------------------------------------------------------------------ATCCTTTC--------------TGTGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGTCTGCCTGTCC-TCAAAACTGATCTCCCCCAGTCCCTCCCCAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCCTGGG--CTG-CCAGAGGAGAAACCT-------AAAATCAAAATC---------TCCAATGTGGACAGGAGACACAGGGTCCTTGGGCTCTGTTGGTGCCCCCTGACCCGG--------------ACATACCTCTCCCACGACCGTATCTGAGATGT-------CCCCTCCTCCTCCAGGCC
i nomLeu3.chr7b             C 0 I 3
s rheMac3.chr10              86923138 274 +  95678458 CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTCGGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-CCACCACTGA------------CCTCTCTAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCCTGGG--CTG-CCAGAAGAGAAACCC-------AAAATCGAAATC------------ACCATGGACAGGGGGCACA--GTCCTTGGCCTTTCTTGGTGCCCCCTGACCCGG--------------GCACACCTCTCCCATGACCTTGTCTGAGACTT-------CCCATTCTCCTCCAGGCC
i rheMac3.chr10             C 0 I 3
s macFas5.chr10              87580028 274 -  96509753 CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTCGGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-CCACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCCTGGG--CTG-CCAGAAGAGAAACCC-------AAAATCGAAATC------------ACCATAGACAGGGGGCACA--GTCCTTGGCCTTTCTTGGTGCCCCCTGACCCAG--------------GCACACCTCTCCCATGACCTTGTCTGAGACTT-------CCCATTCTCCTCCAGGCC
i macFas5.chr10             C 0 I 3
s papAnu2.chr10              82408321 274 +  90941950 CAGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTACTCT-GTGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-CCACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCCTGGG--CTG-CCAGAAGAGAAACCC-------AAAATCGAAATC------------ACCATGGACAGGGGGCACA--GTCCTTGGCCTTTCTTGGTGCCCCCTGACCCGG--------------GCACACCTCTCCCATGACCTTGTCTGAGactt-------ccccttctcctccaggCC
i papAnu2.chr10             C 0 I 3
s chlSab2.chr19              24669065 277 +  33263144 CGGGGTCTCA--------------------------------------------------------------------------------------------ATCTCTCC--------------TGTGCTCT-GTGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCTGCCTGTCT-TTACCACTGA------------CCTCTCCAAGTGCCAGCCTCCACCCT-----CTCTC--CTTGCCCTGGG--CTG-CCAGAAGAGAAACCC-------AAAATCGAAATC---------TCTACCATGGACAGGGGGCACA--GTCCTTGGCCTTTCTTGGTGCCCCCTGACCAGG--------------GCACACCTCTCCCATGACCTTGTCTGAGACTT-------CCCCTCCTCCTCCAGGCC
i chlSab2.chr19             C 0 I 3
s calJac3.chrUn_GL286373      1914447 305 -   2117846 CAGGATCTTG--------------------------------------------------------------------------------------------ATTTCTCC--------------TGTGCTTT-GCCTTCTCCTGGACCAGTCTCAGGCCCCAGCCCTCGCCAGGGAAGACCCAGGGCCTGCCTGTCC-CCACCACTGACCTTCCCAAGTCCCTCCCCAAGTGCCAGCCTCCATGCT-----CTCTC--CTTACCTTGGG--CTG-ACAGAGGAGAAATCT-------AAAATCAAATTC---------TCCAATGTGGACAGGAGGCACAGGGTCCTTGGCCTCTCTTAGTGCCCCCTAACCTGGAACCCCTGACCCACACACACCTCTCCCACGACCCTGTCTGAGATTT-------CCACTCCTCCTCCAGGCC
i calJac3.chrUn_GL286373    C 0 I 3
s mm10.chr15                 82779783 400 + 104043685 TGAGGTCCCGGGCAACCATAGAAATTCAGTTACTTTACTACATCACTTCCAGGAATGAAACCCAAGCACCATACTTTCCTGGCAAGCTCCTTACCCACTGCCATCTCTCTGGCTCCTGGGTACATGGGCTTA-GTGTTGATCTCAACCAGTCTTAGTTTCCAGCCTCTTCCATGATGGATACAGGCCCTATTTGTTC-CCAACTATCA----CCTGAGT-CCTCCTTA--------CTTCTATCCTTCAGGTTCTA--GTTGCCCCACA--GTGAACAAAAGAATATTCTACCCAGAAACATCACAGGCATGGTTGGTTTCCATGTGGGCAAAGGGCCAG--GATTTCAGCTTCTAGAAA----CCCTGACTTTG--------------TTCCACTTCTCCCCTCCCATTGCTGCAGGCTTTAAAGGCTCCACACTTCT-------
i mm10.chr15                I 134 C 0
s canFam3.chr10              46073928 223 -  69331447 -GGGGCCCTG--------------------------------------------------------------------------------------------------CC--------------TGTGCTCAGGGGCTCGCCGCCACCAGTCT--GGTCCC-GCCGCCTCCAGG---------GTGCCCGCCCCCCCGCCCCCGTTGA-----CCCGGTTCCGCCCTAAGT--CCGCCTCGATCCT-----CTTTC--CTGGCCCCGGGGACCC-CTGAAGGATCAATCT-------CGCCTCTAGATC---------TC-----------GGGGGCTCT------------------GGCGGCTTCCGATGGAG--------------GCGCAAGTgccccgccgccccgcccgcgaccc-------c-----------------
i canFam3.chr10             C 0 C 0

a score=807330.000000
s hg38.chr22_GL383582v2_alt     52534 278 +    162811 CTTCTTACAGTGGGGTCTCCTGGAA-TGTCCTTTCCCAAACCCATCTATGCAAATCCTGCCCTTCGGAGGCCCCAGTCCAGCCCCGGCACCTCTCAGGAGCTCGCCCTGCAGAGACTCCTCGGTCTCTCGCTCCGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACGGCTTTG--TCCAAGAGGCC
s panTro4.chr22              40877034 278 +  49737984 CTTCTTACAGTGGGGTCTCCTGGAA-TGTCCTTTCCCAAACCCATCTATGCAAATCATTCTCTTCCGAGGCCCCAGTCCAGCCCCGGCACCTCTCAGGAGCTCGCCCTGCAGAGACTCCTCGGTCTCTCGCTCCGTACCTCGCGCAGAAAGCCCGACTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACAGCTTTG--TCCAAGAGGCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37405406 278 +  46535552 CTTCTTATAGTGGGGTCTCCTGGAA-TGGCCTTTCCCAAACCCTTCTATGCAAATCCTGCTCTTCGGAGGCCCCAGTGCAGCCCCAGCACCTCTCAGGAGCTCGCCCTGCAAAGACCCCTCGGTCTCTCGCTCCGCACCTCGCGCAGGAAGCCCGTCTCCTCCTTCAATCCCTCCTGAGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCACAGGTGAGGGAGGCGATCACGTTGCTCACGGCTTTG--TCCAGGAGGTT
i ponAbe2.chr22             T 14882 I 14984
s nomLeu3.chr7b             106625077 270 - 115148730 CCTCTTGCAGTGAGCTCTCCTGGAA-CGTCCTTTCCCAAATCCCTCTATGCAAACACTGCTTCTGGGAGGCCCCACTGCAACCCTGGCATCTCCCAGGAGCTCGCCCTGCAGAGACCC--------CTCGCTCCGCACCTCGCGCAGGAAGCCCGTCTCCTCCTTCAGTCCCTCCTGAGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCCTACTTGAAGCGGCGCCCACAGGTGAGGGAGGCGATCACGTTGCTCACCGCTTTG--TACAGGAGGCC
i nomLeu3.chr7b             I 3 C 0
s rheMac3.chr10              86923415 275 +  95678458 CCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAACC---CTCTGCAAATCCTGTTCCTCGGAGGCCCTACTGCAGCCCTGGCACTTCTCAGGAGCTCGCCCTGCAGAGACCCCGGCGTCCATCGCTCTGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAGGTCAAACAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTA--TCCAGGAGGCT
i rheMac3.chr10             I 3 C 0
s macFas5.chr10              87580305 275 -  96509753 CCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAACC---CTCTGCAAATCCTGTTCCTCGGAGGCCCTACTGCAGCCCTGGCACTTCTCAGGAGCTCGCCCTGCAGAGACCCCGGCGTCCATCGCTCTGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAGGTCAAACAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGTAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTA--TCCAGGAGGCT
i macFas5.chr10             I 3 C 0
s papAnu2.chr10              82408598 275 +  90941950 CCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAACC---CTCTGCAAATCCTGTTCCTCGGAGGCCCTAGTGCAGCCCTGGCACTTCTCAGGAGCTCGCCCTGCAGAGACCCCGGCGTCCATCGCTCTGCACCTCGCGCAGTAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAGGTCAAACAGCCTGAGGAAGCGAGGATCGTCGTATTCAAAGCGGCGCCCATAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTA--TCCAGGAGGCT
i papAnu2.chr10             I 3 C 0
s chlSab2.chr19              24669345 275 +  33263144 CCTCTAGCAGTGGACTCTCTAGGAA-TGTCCTTTCCCAAACC---CTCTGCAAATCCTGTTCCTCGGAGGCCCCACTGCAGCCCTGGCACTTCTCAGGAGCTCGCCCTGCAGAGACCCCGGGGTCCATCACTCTGCACCTCGCGCAGGAAGCCTGACTCCTCCTTCAGTGCCTCATGTGTTAAGTCAAACAGCCTGAGGAAGCGAGGGTCGTCGTACTCAAAGCGGCGCCCATAGGTGAGGGAGGCTATCACGTTGCTCACTGCTTTA--TCCAGGAGGCT
i chlSab2.chr19             I 3 C 0
s calJac3.chrUn_GL286373      1914755 274 -   2117846 CCTCTTGCAGTGGGCTCTCCTGGAA-TGTCCTTTCCCAAACCC--CTCTGCAAACCCTGCTCCTCGGAAGCCC-GCTGCAGCCCGGGCATCTCTCAGGAGCTCACCCTGCAGACGCCCC-CAGTCCCTGGCTCCGTACCTCGCGTAGTAAGCCGGACTCCTCCTTCAATCCCTCCATTGTTAGGTCCAGCAGCCTGAGGAGGCAAGGGTCATTATACTCGAAGCGGCGCCGGCAGGTGAGGGACGCGATCACGTTGCTCACCGCTTTG--TCCAGGAGGCC
i calJac3.chrUn_GL286373    I 3 C 0
s mm10.chr15                 82780183 250 + 104043685 ATTTTTGTGGTTGACACTTCTAGAAGTCTCCTTTCCAAATCCCCTGTCTACA-------TCTCTGGGAAGATGAACAGCA--------------CAAAAG-TCACTCTGCAGACTCCCTTGAC-------CTTCCTACCTCAGGTATCAAGCCAATTTTCTCAATCATGTATTCTTTCAATGCTCTTAGCATCTTGATGCAGTCAGGATCTTCATACTCGAAGCAATGGGCATAAACAAGAGAGGCAATCACATTGCACATGGCTTTC--TCCAGGAGGGT
i mm10.chr15                C 0 C 0
s canFam3.chr10              46074151 184 -  69331447 -----------------------------------------------------------------------------ccagcccgcgcA-------------CGCGCTCC-----TCCCTGGGGCTCCCGCCGCGCACCTCACGCAGGAAGCCGGAGTCCTGCTTCAGCGCCTGCTGGGTGAGCTCCAGCAGCTGGAGCAGCCACTGGGCGTCGTACTCTAAGCGGCGCCCTTAGGTGAGCGACGAGATCACGTTGCCTACCGCCTTGATTCTCAGAGC--
i canFam3.chr10             C 0 C 0

a score=50410.000000
s hg38.chr22_GL383582v2_alt     52812 14 +    162811 GTTGGGGCGAAAGG
s panTro4.chr22              40877312 14 +  49737984 GTTGGGGCGAAAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37420668 14 +  46535552 GTTGGGGCGAAAGG
i ponAbe2.chr22             I 14984 C 0
s nomLeu3.chr7b             106625347 14 - 115148730 GTTGGGGCGAAAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86923690 14 +  95678458 GTTTGGGCGAAAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87580580 14 -  96509753 GTTTGGGCGAAAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82408873 14 +  90941950 GTTTGGGCGAAAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24669620 14 +  33263144 GTTGGGGCGAAAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1915029 14 -   2117846 GTTGGGGCGAAAGG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82780433 14 + 104043685 ATAAGGATTGAGGG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46074335 14 -  69331447 GCCGGGGCCGAATG
i canFam3.chr10             C 0 I 196

a score=91051.000000
s hg38.chr22_GL383582v2_alt     52826 35 +    162811 GGCGTCCTGGGGGTGGGAGATGCGGGTAAGGGGTT-----
s panTro4.chr22              40877326 35 +  49737984 GGCGTCCTGGGGGTGGGAGATGCGGGTAAGGGGTC-----
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37420682 35 +  46535552 GGCGTCCTGGGGGCGGGAGATGCCGGTCAGGGGTC-----
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106625361 35 - 115148730 GCCGTCCTGGGGGCGGGAGATTCGGTTCAAGGGTC-----
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86923704 35 +  95678458 GTCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTC-----
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87580594 35 -  96509753 GTCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTC-----
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82408887 34 +  90941950 GTCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGT------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24669634 35 +  33263144 GTCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTC-----
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1915043 35 -   2117846 GGCGTCCTGGGGGCAGAAGATGTGGAGCAGCGCTC-----
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82780447 38 + 104043685 GACTACCTGGGTGTGGAA-ATGC-AATGAAAAGTCAAAAT
i mm10.chr15                C 0 C 0
e canFam3.chr10              46074349 196 -  69331447 I

a score=1000359.000000
s hg38.chr22_GL383582v2_alt     52861 310 +    162811 GCCTTCTCCGTCCCCCGCCTTCCCAGTTCCCGCTTTGTGCCCTTCTGCCCATCACCCACCGGCTTGGTCGGCGAAGGCGGCACAAAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGACAGGATCACCCCTGGGGGCG------GGACGGGCACGTGGGCGTTGCCATG---------AAGGCCTTG--GCCCCACCCTCCGCCACCCACTCCAACCCTGGCGCTCCACAAGGTCTCCCGCAGT
s panTro4.chr22              40877361 309 +  49737984 GCCTTCCCCGTCCCCCGCCTTCCCAGTTCCCGCTTTGTGCCCCTCTGCCCATCACCCACCAGAGTGGTTGGCGAAGGCGGCACAAAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGAACACCCCTGGGGGCG------GGACGGGCACGTGCGCGTGGCCATG---------AAAGCATTA--GCCCCACCCTCCACCACCCACTCCAACCCTA-TGCTCCCACTGGTCTCCCGCAGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37420717 309 +  46535552 GCCTTCCCGGTCCTCCACCTTCCCAGTTCCCCCTTAGTGCCCCTCTGCCCATCACCCACCGGAGTGGTCGGCGAAGGCGGCACAGAGGCAGGAGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCATGCGGGCCCGTAGCGTGCCAGGATCACCCCTGGGGGCG------GGACGGACACGTGGGCGTTGCCATG---------AAGGCCTTG--GCCCCACCCTCCACCACCCACTCCAACCCTA-TGCTCCTCCTGGTCTCCCGCAGT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106625396 310 - 115148730 TCCTTCCCCGTCCCCAACCTTCCCAGTTCCCACTTTGTGCCCCTCTGCCCATCACCCACCGGAGTGGTCGGCAAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTCACCCACTGTTCCAGCGACTTCTTGCCCAGGCCCAAGTTGTGCAAGGTGGACACAGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGATCACCCCTGGGGGCG------GGACGGACACGTGGGCGTTGCCATG---------ATGGCCTTG--GCCCCACCCTCCGCCACCCACTCCAACCTTGGCGCTCCACAAGGTCTCCCCCAGT
i nomLeu3.chr7b             C 0 T 14033
s rheMac3.chr10              86923739 309 +  95678458 ACCTTCCCCGTCCCCCGCCTTCCCAGTTCCCGCCTTGTGCCCCTCTGCCCATCACCCACCGGCTTGGTCGGTGAAGGCAGCACAGAGGCAGGCGGCCTCCTCGGTGACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTAGGGGCA------GGACAGGCAGGTGCGAGTGGCCATG---------AAGTCCTTG--GCCCCACCCTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87580629 309 -  96509753 ACCTTCCCCGTCCCCCGCCTTCCCAGTTCCTGCCTTGTGCCCCTCTGCCCATCACCCACCGGCTTGGTCGGTGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTGACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGAAACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTAGGGGCA------GGACAGGCAGGTGCGAGTGGCCATG---------AAGTCCTTG--GCCCCACCCTCTGCCACCCGCTCCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82408921 294 +  90941950 ---------------CGCCTTCCCAGTTCCTGCCTTGTGCCCCTCTGCCCATCACCCACCGGCTTGGTCGGTGAAGGCAGCACAGAGGCAGGCGGCCTCCTCGGTGACCCATTGCTCCAGCGACTTCTTGCCCAGACCCAAGTTGCGCAAGGTAGAAACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTAGGGGCA------GGACAGGCAGGTGCGAGTGGCCATG---------AAGTCCTTG--GCCCCACTCTCTGCCACCCACTCCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24669669 309 +  33263144 ACCTTCCCCGTCCCCCGCCTTCCCAGTTCCCGCCTTGTGCCCCTCTGCCCATCACCCACCAGCTTGGTCGGCGAAGGCGGCACAGAGGCAGGCGGCCTCCTCGGTCACCCATTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGAAACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCATAGCGCGCCAGGAACACCCCTGGGGGCA------GGACAGGCAGGTGCGAGTGGCCATG---------AAGTCCTTG--GCCCCACCCTCTGCCACCCACTGCAACCCAG-CGCTACCCAAGGTCTCCCGCAGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1915078 304 -   2117846 ACTTTTCCTGTTCCCCACCTTCCCAGTTCCCGCCTTGCGCCCCTCTGCCCATCACGCACCGGCGTGGTCTGCGAAGGCAGCACAGAGGTAGGTGGCCTCCTCGGTCACCCACTGCTCCAGAGACTTCTTGCCCAAGCCCAAGTTGCGTAAGGTGGACACGGAGAAGCGTCTCTGCTCTCGCCAGGCAGGGCCGTAGCGCGCCAGGAACAACCCTGGGGACC------AGATGGACACGTGAGCATGGGCATG---------AAGGCCTTG--GCC-----CTGTACCGCCCACTCCAACCCTA-CGCTCCCTTTAGTCTCCCGCACT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82780485 253 + 104043685 ATTGTTGATGTC--------TCCCTGTTCCCAC-TTGCATTCCAC-ACCCATCACCCACCAGCCTGGGCAGTGAAGGCATCACAGAGGTGGCCAGCCTCCTTCGTCATTCACTGCTCCAACAATTTCTTGCCCAGGCCAAAGTTTCGCAGGGTGGACATAGAGAATCGCTTCTGCTCTTGCCATTCAGGCCCATAAGGTGCAAAGGCCAAACCTGCAGGTA-------------CATCAGTGTGTAACCATG---------GAGACCTGG----------CTGTGCTGCCCTCTC--------------------------------
i mm10.chr15                C 0 C 0
s canFam3.chr10              46074545 226 -  69331447 ----------------------------------------------------------------------------------------------GCCTCCTCGGTCACCCACTGCTCCAGGGACTTCTTGCCCAGGCCGAAGTTGCGCAGGGTGGACAGCGAGAAGCGCCGCTGCTCGCGCCACGCACGCCCGTAGCGCGCCAGGAACAACCCTGggggcgggcgaggggcgggc-cgtgggcggggctccgcggcggggcggggcCGTGGGGCTCCCCCCCCCCCCCCCCGCTC---CCCAC-CGCCACTAAATCGCGCCCACT--
i canFam3.chr10             I 196 C 0

a score=85023.000000
s hg38.chr22_GL383582v2_alt     53171 28 +    162811 CCCTAGC-CCGGTCCAGCTGGGCACAGGG
s panTro4.chr22              40877670 28 +  49737984 CCCTGGC-TCTGTCCAGCTGGGCACAGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421026 28 +  46535552 CCCTAGC-CCGGTCCAGCTGGGCACAGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106611673 28 - 115148730 CCCTGGC-CCTGTCCAGCTGGGCACAGGG
i nomLeu3.chr7b             T 14033 I 14005
s rheMac3.chr10              86924048 28 +  95678458 CCCTCGC-CTGGTCCAGCTGGGCACAGGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87580938 28 -  96509753 CCCTCGC-CTGGTCCAGCTGGGCACAGGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409215 28 +  90941950 CCCTCGC-CTGGTGCAGCTGGGCACAGGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24669978 28 +  33263144 CCCTCGC-CTGGTCCAGCTGGGCACAGGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1915382 28 -   2117846 GCCTCGC-CCCGTCCAGGTGGGCACAGGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46074771 27 -  69331447 --CTGACACCCTTCCCGCCGGGGACAGGT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82780738  0 + 104043685 C

a score=297835.000000
s hg38.chr22_GL383582v2_alt     53199 127 +    162811 -----CCCACTCTTTGCTCACCCACATTGCTC----------CCCTGCCTGGGGCGGGGTTTGGC-CCCACCTCGTCTCTGCCCACCCTGACCACCTTTCCACTCAAGGAAGATCCCGC-----CCGTCCCGCCCACACTGAGCCCGC
s panTro4.chr22              40877698 132 +  49737984 -----CCCACTCTTTGTGCATCCACCTTGCTC----------CCTTGGCTGGGGCAGGGCTTTGC-TCCACCTCGTCTCTGCCCACCCTGACCGCCTTTGCACTCAGTGAAGATCCCGCGGGCCCCGCGCCACCCACACTGAGCTTAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421054 127 +  46535552 -----CCCACTCTTTGCTCACCCACCTTGCTC----------CCCTGCCTCAGGCGGGGCTTGGC-CCCACCGCTGCTCTGCCCACCCTGACCGCCTTTCCACTCAGGGAAGATCCCGC-----CCGCCCCGCCCACACTAAGCCCAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106625706 127 - 115148730 -----CCCACTCTTTGCTCACCCACATTGCTT----------CCCTGCCTGGGGCAGGGCTTGGC-CCCACCTCTTCTCTGCCCACCCTGACCACCTTTGCACTCAGGGACGATCCCGC-----CCACCCCGCCCACGCTGAGCCCGC
i nomLeu3.chr7b             I 14005 C 0
s rheMac3.chr10              86924076 130 +  95678458 -----CCCACTC--TGCTTACCTGCCTTGCTA----------CCCTGGCTGGGGCAGGTTTTTGC-CCCACCTCTTCTCTGCCCACCCTGACCGCTTTTCCACTCAGGGAAGATCCCGCATGCCCCGCCCCACCTACACTGAGCCCAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87580966 130 -  96509753 -----CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGC-CCCACCTCTTCTCTGCCCACCCTGACCGCCTTTCCACTCAGGGAAGATCCCGCATGCCCCGCCCCACCTACACTGAGCCCAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409243 130 +  90941950 -----CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGC-CCCACCTCTTCTCTGCCCACCCTGACCGCCTTTCCACTCAGGGAAGATCCCGCATGCCCCCTCCCACCTACACTGAGCCCAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24670006 130 +  33263144 -----CCCACTC--TGCTTACCTGCCTTGCTT----------CCCTGGCTGGGGCAGGTTTTTGC-CCCACCCCTTCTCCGCCCACCCTGACCGCCTTTCCACTCAGGGAAGATCCCGCATGCCCCGCCCCACCTACGCTGAACCCAC
i chlSab2.chr19             C 0 I 53
s calJac3.chrUn_GL286373      1915410 141 -   2117846 -----TCCACTC--TGCTCATCCGTCTTGCTTGCCTGCACTCCCCTGCCTGGGGCAGGGCTTGACTCCCTACTTGGCTCTGTCTACGCTGACCGCCTTTCCACTCAGGGAAGATCCCGCCGGACCGGCCCCACTCACACTGAGCCCGA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82780738  79 + 104043685 -----CCCACTT------CATTTCTCTTCTCC----------TCTGGGCTCAG---------TGT-CCCTCAAAACCTCAATCAACCCTTCCTACC----------AAGAATATCTC-----------------TAC-----------
i mm10.chr15                C 0 C 0
s canFam3.chr10              46074798 105 -  69331447 CTCTGCCCGCGT--TGCTCGCCGGC---GCTT----------CTCGGCC---GGCAGGTGCTGGC-CCC-------CGCCGCCCGCCTCGACC-CCGTCGCAGTCCGGGAGAGTCCTGG-----CGTCCCGGCTCGC-----------
i canFam3.chr10             C 0 C 0

a score=11865.000000
s hg38.chr22_GL383582v2_alt     53326 8 +    162811 AGCATAGG
s panTro4.chr22              40877830 8 +  49737984 AGCACAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421181 8 +  46535552 AGCATAGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106625833 8 - 115148730 AGCATAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86924206 7 +  95678458 -GCACAGG
i rheMac3.chr10             C 0 I 45
s macFas5.chr10              87581096 7 -  96509753 -GCACAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409373 7 +  90941950 -GCACAGG
i papAnu2.chr10             C 0 C 0
s calJac3.chrUn_GL286373      1915551 8 -   2117846 AGGACATG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46074903 8 -  69331447 CCCACCGC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82780817 0 + 104043685 C
e chlSab2.chr19              24670136 53 +  33263144 I

a score=15198.000000
s hg38.chr22_GL383582v2_alt     53334 24 +    162811 CGCGGTCCCCGCCACCGCCACTTC
s panTro4.chr22              40877838 22 +  49737984 TGCGGTCCCCGCC--CCCCACTTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421189 24 +  46535552 CGCGGTCCCCGCCACCGCCACTTC
i ponAbe2.chr22             C 0 I 12
s nomLeu3.chr7b             106625841 24 - 115148730 CGTGGTCCCTGCCACCGCCACTTC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87581103 22 -  96509753 CGCTGACGCCGTC--CCCCTCGTC
i macFas5.chr10             C 0 I 23
s papAnu2.chr10              82409380 22 +  90941950 CGCTGACGCCGTC--CCCCTCTTC
i papAnu2.chr10             C 0 I 23
s calJac3.chrUn_GL286373      1915559 24 -   2117846 CGCAGCCCCCCAGACACCCACTTC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46074911 20 -  69331447 CTGGGTCCTCATTCCCGCCC----
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82780817  0 + 104043685 C
e chlSab2.chr19              24670136 53 +  33263144 I
e rheMac3.chr10              86924213 45 +  95678458 I

a score=-7004.000000
s hg38.chr22_GL383582v2_alt     53358 3 +    162811 GAC-
s panTro4.chr22              40877860 3 +  49737984 GAC-
i panTro4.chr22             C 0 I 21
s nomLeu3.chr7b             106625865 3 - 115148730 GAC-
i nomLeu3.chr7b             C 0 I 21
s rheMac3.chr10              86924258 1 +  95678458 G---
i rheMac3.chr10             I 45 C 0
s macFas5.chr10              87581148 1 -  96509753 G---
i macFas5.chr10             I 23 C 0
s papAnu2.chr10              82409425 1 +  90941950 G---
i papAnu2.chr10             I 23 C 0
s calJac3.chrUn_GL286373      1915583 2 -   2117846 -AA-
i calJac3.chrUn_GL286373    C 0 I 9
s canFam3.chr10              46074931 3 -  69331447 -GCC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82780817 0 + 104043685 C
e chlSab2.chr19              24670136 53 +  33263144 I
e ponAbe2.chr22              37421213 12 +  46535552 I

a score=1337624.000000
s hg38.chr22_GL383582v2_alt     53361 456 +    162811  
s panTro4.chr22              40877884 455 +  49737984  
i panTro4.chr22             I 21 C 0
s ponAbe2.chr22              37421225 454 +  46535552  
i ponAbe2.chr22             I 12 C 0
s nomLeu3.chr7b             106625889 455 - 115148730  
i nomLeu3.chr7b             I 21 C 0
s rheMac3.chr10              86924259 478 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87581149 460 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409426 460 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24670189 465 +  33263144  
i chlSab2.chr19             I 53 C 0
s calJac3.chrUn_GL286373      1915594 437 -   2117846  
i calJac3.chrUn_GL286373    I 9 C 0
s mm10.chr15                 82780817 396 + 104043685  
i mm10.chr15                C 0 I 160
s canFam3.chr10              46074934 385 -  69331447  
i canFam3.chr10             C 0 C 0

a score=19413.000000
s hg38.chr22_GL383582v2_alt     53817 5 +    162811 CCAGA
s panTro4.chr22              40878339 5 +  49737984 CCAGA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421679 5 +  46535552 CCAGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626344 5 - 115148730 CCAGA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86924737 5 +  95678458 CCAGA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87581609 5 -  96509753 CCAGA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409886 5 +  90941950 CCAGA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24670654 5 +  33263144 CCAGA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1916031 5 -   2117846 CTAGA
i calJac3.chrUn_GL286373    C 0 I 17057
s canFam3.chr10              46075319 5 -  69331447 CCAGG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82781213 160 + 104043685 I

a score=138475.000000
s hg38.chr22_GL383582v2_alt     53822 43 +    162811 CTACAGG-TCCTAGTCCT---ATTTGAACCTTGGACGACCCCCGGGG
s panTro4.chr22              40878344 43 +  49737984 CTACAGG-TCCTAGTCCT---ATTTGAACCTTGGACGACCCCCGGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421684 43 +  46535552 CTACAGG-CCCTAGTCCT---ATTTGAACGTTGGACGACCCCCGGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626349 43 - 115148730 CTACAGG-TCCTAGTCCC---AAGTGAGCCTTGGGCGACCCCTGGGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86924742 43 +  95678458 CTGCAGG-TCCTAGTCCT---ATTTGAGCCTTGGGCGACCCCCGGGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87581614 43 -  96509753 CTGCAGG-TCCTAGTCCT---ATTTGAGCCTTGGGCGACCCCCGGGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409891 43 +  90941950 CTGCAGG-TCCTAGTCCT---ATTTGAGCCTTGGGCGACCCCCGGGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24670659 43 +  33263144 CTGCAGG-TCCTAGTCCT---GTTTGAGCCTTGGGTGACCCCCGGGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933093 43 -   2117846 CTGCAGG-TCCTAGTTCC---AAATGGGCCTTGGGCGACCCCTGGGG
i calJac3.chrUn_GL286373    I 17057 T 17100
s canFam3.chr10              46075324 47 -  69331447 CTGCAGGCCCCCAGTCTCGGGGTGCTAGCCTTGGGGCACCCCTGGGG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82781213 160 + 104043685 I

a score=119172.000000
s hg38.chr22_GL383582v2_alt     53865 36 +    162811 CTACCAGGAGTGAGCAGGTGGAAGGAGGAGACCCAG
s panTro4.chr22              40878387 36 +  49737984 CTACCAGGAGTGAGCAGGTGGAAGGAGGAGACCCAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421727 36 +  46535552 CTACCAGGAGTGAGCAGGTGGGAGGGGGAGACCCGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626392 36 - 115148730 CTACCAGGAGTGAGCAGGTGGAAGGAGGAGACCCAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86924785 36 +  95678458 ATACCAGGAGTGAGCAGGTGGAAGGAGGAGACCTGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87581657 36 -  96509753 ATACCAGGAGTGAGCAGGTGGAAGGAGGAGACCTGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82409934 36 +  90941950 ATACCAGGAGTGAGCAGGTGGAAGGAGGAGACCTGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24670702 36 +  33263144 ATACCAGGAGTGAGCAGGTGGAAGGAGGAGACCTGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1916036 36 -   2117846 CTACCAGGAGTGAGCAGGTGGAAGGAGGAGACTCAG
i calJac3.chrUn_GL286373    T 17100 C 0
s canFam3.chr10              46075371 33 -  69331447 ---CCAGCAGCACTCTGGTGCAAGGGCCCGATCTGG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82781213 160 + 104043685 I

a score=719833.000000
s hg38.chr22_GL383582v2_alt     53901 241 +    162811 CCTCCTGATCCTGGGGCGGGGGTG-----------GG-GGTCACACCTTCTGTG---ATGGAGGAACTCAGTTTGGATGCG----TCACCCAGGTATGACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGCATCCCATTCC-CAGATGATGG--------TCCATGCCGGTGAGCAGTGAGGCCCGAGGACCCACAGTGCAAAAGGTTTGAACCGGGTCACTGCACCCCCTTCATCCTCGATTTCGTGATTTAAACGGC-------
s panTro4.chr22              40878423 241 +  49737984 CCTCCTGATCCTGGGGCGGGGGTG-----------GG-GGTCACACCTTCTGTG---ATGGAGGAACTCAGTTTGGATGCG----TCACCCAGGTATGACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGCATCCCATTCC-CAGATGATGG--------TCCATGCCGGTGAGCAGTGAGGCCCGAGGACCCACAGTGCAAAAGGTTTGAACCGGGTCACTGCACCCCCTTCATCCTCGATTTCGTGATTTAAACGGC-------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37421763 243 +  46535552 TCTCCTGATCCTGGGGCGAGGGTG-----------GGAGGTCACACCTTCTAGG---ATGGAGGAACTCAGTTTGGATGCG----TCACCCAGGTATGACCTTGCAAGAGTCACCAAAACTGCTGATAGGCCCCAGTTAGCATCCCATTTTACAGATGGTGG--------TCCATGCCGGTGAGCAGTGAGGCCCAAGGACCCACAGTGCACAAGGTTTGAACCGGGTCACTGCACTCCCTTCATCCTTGATTTCCTGATTTAAACGGC-------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626428 242 - 115148730 CCTCCTGATCCTGGGGCGGGGGTG-----------GG-GTTCACACCTTCTAGG---ATGGAGGAACTCAGTTTGGATGCG----TCACCCAGGTATGACCTTGCAAGGGTCACCAAAATTGCCCATAGGCCCCAGTTAACATCCTATTTTACAGATGATGG--------TCCATGCCGGTGAGCAGTGAGGCCCGAGGACCCACAGTGCAAAAGGTTTGAACCGGGTCACTGCACCCCCTTCATCCTTGATTTCCTGATTTAAACGGC-------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86924821 242 +  95678458 CCTCATGATCCTGAGGTGGGGGTG-----------GG-GTTCACACCTTCTATG---ATGGAGGAACTCAGTTTGGATGCA----TCACCCAGCTATGACCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGCATCCCATTTTACAGATGATGG--------TCCATGCCAGTGAGCAGTGAGGCCTGAGGACCCACAGTGCAAAAGGTTTGAACCAGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAAGACC-------
i rheMac3.chr10             C 0 I 15
s macFas5.chr10              87581693 242 -  96509753 CCTCATGATCCTGAGGTGGGGGTG-----------GG-GTTCACACCTTCTATG---ATGGAGGAACTCAGTTTGGATGCA----TCACCCAGCTATGACCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGCATCCCATTTTACAGATGATGG--------TCCATGCCAGTGAGCAGTGAGGCCTGAGGACCCACAGTGCAAAAGGTTTGAACCAGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAAGACC-------
i macFas5.chr10             C 0 I 2
s papAnu2.chr10              82409970 242 +  90941950 CCTCATGAtcctgaggtgggggtg-----------gg-gttcaCACCTTCTATG---ATGGAGGAACTCAGTTTGGATGCA----TCACCCAGCTATGACCTTATAAGGGTCCCCAAAATTGCCGATAGACCCCAGTTagcatcccattttacagatgatgg--------tCCATGCCAGTGAGCAGTGAGGCCTGAGGACCCACAGTGCAAAAGGTTTGAACTGGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTCAAGACC-------
i papAnu2.chr10             C 0 I 2
s chlSab2.chr19              24670738 242 +  33263144 CCTCATAATCCTGAGGTGGGGGTG-----------GG-GTTCACACCTTCTATG---ATGGAGGAACTCAGTTTGGATGCA----TCACCCAGCTATGACCTTATAAGGGTCACCAAAATTGCCGATAGACCCCAGTTAGCATCCCATTTTACAGATGATGG--------TCCATGCCAGTGAGCAGTGAGGCCTGAGGACCCACAGTGCAAAAGGTTTGAACCGGGTCACTGCACACCCTTCATCCTTGATTTCCTGATTTAAACGGC-------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1916072 240 -   2117846 CCTCCTGATCCTAGGGCAGGGATG-----------GG-GGTCACAACTTCTATA---ACGCAGGAACTCAGTTTAGATG------TCACCTGGGTATGACCTTGCAAGAGTGACTGAAATTGCAGACAGGCCCCAGTTAGCATCCCATTTCACAGATGATCT--------TCCATACTGGTGAGCAGTGAGGCCGAGGAATGCAGAGTGCAAAAGGCTTGAACCAGGTCACTGCGTCCTCTTCATCCTTGATTTCCTGATTTAAACGTC-------
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82781373 238 + 104043685 CATCCCCATCCT--GGTGAGGCTGCCTATGACTGCAG-TGTCTTATCTTTTAAGTTCAGCAAAGGAATCACAGTAGATGTGA---CTTCCCAGTGGGGACCTTGCCAGAGCCA-GAAAACTGTCCTGGGTTCT---TTAGAATGTCAACATTC--ATGAAGAAACTTGTTTCCTTAACATTG-GCAGTGAGGCCAGAGAGCACACAGCAGCAAGAAATTCAGGCAGGT-ACAGCACCTC------TCTCCACTCAGTG------------------
i mm10.chr15                I 160 C 0
s canFam3.chr10              46075404 223 -  69331447 CCCCGTGACCCT-----------------------GG-GGTCACACTCTCTACG---GAGGAGGGGCTGCCGCTGGATCAGACCTCTTCTTAGCTCTGACTTTGCAAAGGTCGCCAAAATTGTCAGTGGGCCAT-GTTAG-atccccttctacaggtgaaga----------------------aactgaggctcaAGAACCCACAGCGGCTAGAGTTGTACCT--GTCATTGTACCTATGTTAGCCCCGGTTTCCTGACTGAGATGGGGTTCCCC
i canFam3.chr10             C 0 C 0

a score=16850.000000
s hg38.chr22_GL383582v2_alt     54142 8 +    162811 ACTCAGGA
s panTro4.chr22              40878664 8 +  49737984 ACTCAGGA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37422006 8 +  46535552 ACTCAGGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626670 8 - 115148730 ACTCAGGA
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87581937 8 -  96509753 ACTTTAAA
i macFas5.chr10             I 2 I 5
s papAnu2.chr10              82410214 8 +  90941950 ACTTTAAA
i papAnu2.chr10             I 2 I 5
s chlSab2.chr19              24670980 8 +  33263144 ACTCAGGA
i chlSab2.chr19             C 0 I 2
s calJac3.chrUn_GL286373      1916312 8 -   2117846 GCTCAGGA
i calJac3.chrUn_GL286373    C 0 I 2
s mm10.chr15                 82781611 6 + 104043685 --TCCGGA
i mm10.chr15                C 0 C 0
s canFam3.chr10              46075627 8 -  69331447 AGTCCAGA
i canFam3.chr10             C 0 C 0
e rheMac3.chr10              86925063 15 +  95678458 I

a score=531428.000000
s hg38.chr22_GL383582v2_alt     54150 186 +    162811 C--TAACTCATCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTACTCCATAA-CATATGT--TGCCCAATGGGCTTGCATGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGCCTTTGGAAAATCCAGTCCTTCATGCCATGTATAAATGTCC
s panTro4.chr22              40878672 188 +  49737984 CCCTGACTCCTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGCGACTTTGTGCTCCATAA-CATATGT--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCA-GCTCCA------CCTCGAGGC---CCTTGC-CCTAGTCTT---CCTTGGCCTTTGGAAAATCCAGTCCTTCATGCCATGTATAAATGCCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37422014 188 +  46535552 CCCTGACTCGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGCTCCATAA-CATATGT--TGCCCAATGGGCTGGCATGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGCCTTTGGAAAATCCAGTCCTTCATGCCATGTATAAATGCCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626678 188 - 115148730 CTCTGACTCGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTCTGTGCTCCATAA-CATATGT--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGACTTTGGAAAATCCAGTCCTTCATGCCATGTATAAATGCCC
i nomLeu3.chr7b             C 0 T 14000
s rheMac3.chr10              86925078 185 +  95678458 --CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTGCTCCATAA-CATATTG--TGCCC-ATGGGCTTGCACGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTTGGAAAATCCAGTCCTTCGTACCATGCACAAATGCCC
i rheMac3.chr10             I 15 C 0
s macFas5.chr10              87581950 186 -  96509753 --CTGACTTGTCTTCCATTCGTAAGTCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTGCTCCATAA-CATATTG--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTTGGAAAATCCAGTCCTTCGTACCATGCACAAATGCCC
i macFas5.chr10             I 5 C 0
s papAnu2.chr10              82410227 186 +  90941950 --CTGACTTGTCTTCCATTCGTAAGTCCTTTTCTTCTGGTGTCAGCAGAAGGGACTTTGTGCTCTATAA-CATATTG--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTTGTAAAATCCAGTCCTTCGTGCCATGCACAAATGCCC
i papAnu2.chr10             I 5 C 0
s chlSab2.chr19              24670990 173 +  33263144 --CTGACTTGTCTTCCATTCCTAAGTCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTGCTCCATAA-CATATTG--TGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCA-GCTCCA------CCTCCAGGC---CCTTGC-CCTACTCTT---CCTTGGTTTTTGGAAAATCCAGTCCTTCG-------------TGCCC
i chlSab2.chr19             I 2 C 0
s calJac3.chrUn_GL286373      1916322 186 -   2117846 --CTGAACCCTTTCCCGTTCCTAAGGCCTTTCCTTCTGCTGTCACCAGAGGGGACTTTGTGCTCCAGAG-TCTATGC--TGCCCAGCGGGCTTGCACAACCACTGCCAAGTCCA-GCCCCA------CTTGCAGgc---ccttgc-cctactctt---ccttggcattcagaaaatctaatccttcaggccgtgtacaaatgccc
i calJac3.chrUn_GL286373    I 2 C 0
s mm10.chr15                 82781617 170 + 104043685 --CTGAC--ATCCTACACT----AAACCTCT--------TACCAGGGTAAGATGCTATGTTTGGTAGGACCATAAGA--GACCC---GGACCTGTATGGCTGCTGCCCTCTCCT-ACTAGAGTGAACCCTTCAGTCACATCTTGCTTCAACTCCTGAACTTTGACCCTGAAAACATTTA--CCT-----------AGAAATTCCC
i mm10.chr15                C 0 I 6
s canFam3.chr10              46075635 183 -  69331447 ----ATTCCTTCCCCTATTCTCACAACTCTTCCTCCTGAAGGAACCAGAAGGGACCCAG-GTCACGTAA-TTTAAGGACTGTCCAACCAGCTCTCAAATCCACCGCCAAGGCCACACTCCA-------CTCCAGGC---CTTGGT-TCTCTCTGA---CCTTTGA--TTGGAAAATCCAATCGGTCCTGCAGGCTCTGGACATCA
i canFam3.chr10             C 0 C 0

a score=1263322.000000
s hg38.chr22_GL383582v2_alt     54336 338 +    162811 TTCCCCAGGACGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGATCCAGCCTGTGGTTTAACCCACCACCCA-TGTTTGCTGGTGGTGGGGCATCCTCAGGACCTCTGCCGCCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCAAGGTTGCCCAGCCCGGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGTGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTATCATGGCCAGGGGCACCAGTGCTTC---------TAGCCCCATGGCTGCCTCACTACCAA
s panTro4.chr22              40878860 337 +  49737984 TTCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTGCAGCCTGTGGTTTCACCCACCATCCA-TGTTTGCTTCTGGTAGGGGAGCCTCAGCACCTCTGCCACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTATCACGGCCAGGGGCACCAGTGCTTC---------TAGCCCCATGGCTGCCTCACTACCAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37422202 337 +  46535552 TCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGCTCCACCCACCACCCA-TGTTTGCTGGTGGTGGGGGATCCTCAGGACCTCTGCCGCCCTCCAGGACCTCCTCCCTCACCTGGTCAAAGCAGTATGGTGTGTTCTGGAAGTCCACGTGCAGCA-GGTTGCCCAGTCCGGGCAGTGGCAGGGGGCCCGGTGGGTAGCGTGCAGTCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACGGCCAGGGGCACCAGTGCTTC---------TAGCCCCATAGCTGCCTCACTACCGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106612866 337 - 115148730 TCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGTTTCACCCACCACCCA-TGTTTGCTGGTGGTGGGGGATCCTCAGGACCTCTGCCGCCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGTAGTCCAGCATTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTATCACGGCCAGGGGCACCAGTGCATC---------CAGCCCCATGGCTGCCTCACTGCCCA
i nomLeu3.chr7b             T 14000 I 13763
s rheMac3.chr10              86925263 335 +  95678458 TCCCCCTGGAAGTCCCCCAAACCCGCT--CCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACCCA-TGTTTGCTGCTGGTGGGGGATCCTCAGGACCTCTGCCACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCTGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTATCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTTACTGCCCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87582136 335 -  96509753 TCCCCCTGGAAGTCCCCCAAACCCGCT--CCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACCCA-TGTTTGCTGCTGGTGGGGGATCCTCAGGACCTCTGCCACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAACGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGTCTTACTGCCCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82410413 337 +  90941950 TCCCCCTGGAAGTCCCCCaaacctgcttccccttctcagCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACCACCCA-TGTTTGCTGCTGGTGGGGGATCCTTAGGACCTCTGCCACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAGCA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTCACTGCCCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24671163 337 +  33263144 TCCCCCTGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGCCTGTGGTTTCACCCACTACCCG-TGTTTGCTGCTGGTGGGGGATCCTCAGGACTTCTGCCACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACA-GGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACAGCCAGGGGCACCAGTGCATC---------TAGCTCCATAGCTGCCTCACTGCCCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1916508 337 -   2117846 tcccccaggaagtcccccAAACCTGCTTCCCTTTTGCAGCCTGGCTTCTGGTCCAGCCTGTGGCTTCACCCACCACCCA-TGTTTGCTGCTGGTGGGGGATGCTCAGGACCTCTGCCGTCATCCAGGCCCTCTTCCCTCACCTGGTTGAAGCTGTTTGGTGTATTCTGGAAGTCCACATGCAGCA-GGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGTGGGTAGCGTGCAGCCCAGCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCACGAAGATGGCCACTGTCACGGCCAGGGGCACCAGTGCATC---------CAGCCCCATGGCTGCCTCGCTGCCCA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82781793 334 + 104043685 TACCTCCAAAAGT-TGCCAATCCTG--TCCCCTTTGGGGGCCAGATCCCTGTTTGACCTGTGGCTTAGCCC----TCAC-TGTGTGCTGCTA--CAGACACTATAAGAGGAATTAAAACCCACCA---CTAAGTCACTGACCTTGTACAAGCTGTATGGCATGTTATCCAGGTCCACCTGCAGCA-GGTTACCCAGCACAGGCCATAGCACAGGGCCTGGTGGGTAGCGAGAAGTCCAGCGCTGGTGCCGGTGCATCAGGTCCACCAGTAATATGAAGATGACTGTGAATATGGCCACAGGCCACAGGTCAGTCCCAGTCAGCAGCTCCATGGCTGCCCCACTGCTGC
i mm10.chr15                I 6 C 0
s canFam3.chr10              46075818 302 -  69331447 -----------------------------------TCTTCCCATCTCCTTGTGCAGCCTGAAGCTCCACCCGCCACCCGCTGTCTGCTGCTA---GGGGGTCCCCAGG-TCTCTGCTGCCCCCCA------CCTTCCTTACCTGGCTGAAGTAGCAGATTGGTTCCTGGAAGTCCATCTGCAGCA-GGTTGCCCACCATGGGCACTGGCGTGGGGCCTGGCGGGTAGCGTGTGGCCCAGCGCCTGCGCCGGTGCATCAGGTCTACCAGGAGCAGGAAGATGGCCACGGCTACGGCCAGGGGCCCCAGCGTGTCCCCGGTCAGCAGCCCCATAGCTGTCTCAGTGCCCG
i canFam3.chr10             C 0 C 0

a score=420173.000000
s hg38.chr22_GL383582v2_alt     54674 129 +    162811 CTGGGCTCCTCTGGACACACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCGGCACACCGAGCGCGTGACCCTTC--------CCTTATAAAGGGA-GCTGATGATGGCCTTCGCCCTCTG
s panTro4.chr22              40879197 129 +  49737984 ATGGGCTCCTCTGGACACACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACACCAAGTGCGTGACCCTTC--------CCTTATAAAGGGA-GCTGATGATGGCCTTCGCCCTCTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37422539 127 +  46535552 CTGGGCTCCTTTGGACACACCTGGCACCCCCACCCCACCAGG--CAGAG----GACCAGGCAGGACACACTCAGCACACCGAGCACGTGACCGTTC--------CCTTATAAAGGGA-GCTGATGATGGCCTTTGCCCTCTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106626966 129 - 115148730 CTGGGCTCCTCTGGACACACCTGGCACCCCCACCCCACCAGGCACAGAG----GACTAGGCAGGACACTCTCAGCACACCGAGTGCATGACCGTTC--------CCTTATAAAGGGA-GCTGATGATGGCCTTTACCCTCTG
i nomLeu3.chr7b             I 13763 C 0
s rheMac3.chr10              86925598 129 +  95678458 CTGGGCTCCTCTGGACACACCTGGCTCCCCCACCGCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACACCAAGTGCGTGATCATTC--------CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87582471 129 -  96509753 CTGGGCTCCTCTGGACACACCTGGCTCCCCCACCGCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACATGAAGTGCATGATCATTC--------CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82410750 129 +  90941950 CTGGGCTCCTCTGGACACACCTGGCTCCCCCACCGCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACACCAAGTGCGTGATCATTC--------CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24671500 129 +  33263144 CTGGGCTCCTCTGGACACACCTGGCTCCCCCACCGCACCAGGCACAGAG----GACAAGGCAGGACACTCTCAGCACACCAAGTGCGTGATCATTC--------CCTTATAAAGGAA-GCTGATCATGGCCTTTGCCCTCTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1916845 129 -   2117846 CTGAACTCCTCTGGACACCCCTGGAACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCATACCGAGTGTGTGACTGTTC--------CCTTATAAAGGGA-GCTGATGATGGCCTCTGCCCTCTG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82782127 115 + 104043685 CCAGGCTTCCCAG---AGACCAATGAATAACACTCAATACAACACCTAG----GATCAGACAG-------------CCCCAAGCTTG-GATCCTAC------CACCTTATAAAGGGATGCCAGGGTTGCCCTTTGTCCTCTG
i mm10.chr15                C 0 I 7845
s canFam3.chr10              46076120 136 -  69331447 CTGGGCTCGT-GGGGCACGCCGGTGTCCCTCACCACACCAGGGACCTGGGGCTGGCCAGCCAGGGTGCTCTCCCCGCACTGTCCGCTCAACCGGCCTGGCCTCACTTTCTAAAGGGA-GCTGAGACCGGCCTTTGCCC----
i canFam3.chr10             C 0 C 0

a score=2211174.000000
s hg38.chr22_GL383582v2_alt     54803 819 +    162811  
s panTro4.chr22              40879326 821 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37422666 792 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106627095 805 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86925727 801 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87582600 799 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82410879 801 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24671629 801 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1916974 784 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46076256 688 -  69331447  
i canFam3.chr10             C 0 T 4986
e mm10.chr15                 82782242 7845 + 104043685 I

a score=372274.000000
s hg38.chr22_GL383582v2_alt     55622 122 +    162811 AGTTGGTAGCCTGAAGGCCCTTGCCCCAGCCTGTGACAGCATCCTCCAG-GGCTGCCTGAGGGTCgtcattctccactgcttcctggcctccatgtttctgattagaaatctggtggaaacat
s panTro4.chr22              40880147 122 +  49737984 AGTTGGTAGCCTGAAGGCCCTTGCCCCAGCCTGTGACAGCATCCTCCAG-GGCTGCCTGAGGGTCgtcattctccactgctttctggcctccatgtttctgattagaaatctggtggaaacgt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37423458 122 +  46535552 AACTGGTAGCCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTCCAG-GGCTGCCTGAGGGCCGTCGTCCTccactgctttctggccttcacgtttctgattagaaatctggtgggaacgt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106627900 121 - 115148730 AGTTGGTAGCCTGAAGG-CCTTGCCCCAGCCTGTGACAACATCCTCCAG-GGCTGCCTGAGGGCCGTCGTCCcccactgctttctggcctccatgtttctgattagaaatctggtgggaacgt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86926528 122 +  95678458 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACAtccttcag-ggctgcctgagggctgtcgtcctccactgctttctggcctccatgtttctgattagaaatctggtgggaacgt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87583399 122 -  96509753 AGTTAGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACAtccttcag-ggctgcctgagggctgtcgtcctccactgctttctggcctccatgtttctgattagaaatctggtgggaacgt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82411680 122 +  90941950 AGTTGGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTTCAG-GGCTGCCTGAGGGCTGTCGTCTTCCACTGCTTTCTGGCCTCCATGTTTCTGATTAGAAATCTGGTGGGAACGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24672430 122 +  33263144 AGTTGGTAACCTGAAGGCCCTTGCCCCAGCCTGTGACAACATCCTTCAG-GGCTGCCTGAGGGCCgtcgtcctccactgctttctggcctccatgtttctgattagaaatctggtgggaacgt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1917758 123 -   2117846 AGTTGGTAGTCTGAAGGCCCTTGCCCCAGCCTGTGAAGACATCCTCCAGTGGCTTCTTGAGGGCCGCTGTCCTGcactgctttctggcctccatgtctttgattagaaatttggtggtaaCAT
i calJac3.chrUn_GL286373    C 0 I 10290
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T

a score=283604.000000
s hg38.chr22_GL383582v2_alt     55744 150 +    162811 tatggaggatcctttatttaggatatgttg------cttttttatttttattttttct-------------------ttagacagggtctcactctgttgcccgggccggagtgcagtggcaggatcatggctcactgcaatctcaacatcaagtggacctcctgcctcccaagt
s panTro4.chr22              40880269 150 +  49737984 tatggaggatcctttatttaggatatgttg------cttttttatttttattttttct-------------------ttagacagggtctcactctgttgcccgggccggagtgcagtggcaggatcacggctcactgcaatctcaacatcaagtggacctcctgcctcccaagt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37423580 156 +  46535552 tatggaggatcctttgtTCAGGACATGTTGCCCCCCCCCttttttttttttttttttt-------------------aaggacagggtctcactgtgttgcccaggctggcgtgcagtggtaggatcatggctcactgcaatctcaacatcaagtggacctcctgcctcccaagt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106628021 148 - 115148730 tatggaggatcctttgttcaggatatgttg------cCtttt--tttttttttttttt-------------------aaagacagggtctcactctgttgcccaggctggagtgcagtggcaggatcacggctcactgtaatcttgacatcaagtagacctcctgcctcccaagt
i nomLeu3.chr7b             C 0 I 2076
s rheMac3.chr10              86926650 148 +  95678458 tatggaggatcctttgttcaggatCTGTTG------ACTT---------------------AAAAAAAAAAAAAAAAAAagacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgcgacctcaagtagacctcctgcctcccaagt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87583521 145 -  96509753 tatggaggatcctttgttcaggatatgttg------ACTT------------------------AAAAAAAAAAAAAAAagacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagtcgcgacctcaagtagacctcctgcctcccaagt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82411802 146 +  90941950 TATGGAGGATCCTTTGTTCAGGATatgttg------actt-----------------------aaaaaaaaaaaaaaaaagacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagttgCGACCTCAAGTAGACCTcctgactcccaagt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24672552 153 +  33263144 tatggaggatcctttgttcaggatatgttg------ACTTTa----------------aaaaaaaaaaaaaaaaaaaaaagacagggtcttactctgttgcccaggctggagtgcagtggcaggatcacggctcactgcagttgtgacctcaagtagacctcctgcctcccaagt
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T
e calJac3.chrUn_GL286373      1917881 10290 -   2117846 I

a score=448658.000000
s hg38.chr22_GL383582v2_alt     55894 199 +    162811 agctgggactacaggcaccaccgagcccAAA---TAA-----ttttttttttgagacggagttttgctc-tgtcgcccaggtgggagtgcaatgatgcgatctcggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccacc-accatgcctggctgatttttT
s panTro4.chr22              40880419 199 +  49737984 agctgggactacaggcaccactgagcccAAA---TAA-----ttttttttttgagacagagttttgctc-tgtcgccctggtgggagtgcaatgatgcgatctcggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgcc-accatgcctggctgatttttT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37423736 199 +  46535552 agctgggactacaggcactaccgagcccAAA---TAA-----ttttttttttgagacggagttatgctc-tgttgcccaggctggagtgcaatgacgcgatcccggctcactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccgagtagctgggattatagaagcccacc-accatgcctggctgatttttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106630245 202 - 115148730 agctgggactacagccaccaccgagcccCAAtttttt-----ttttttttttgagacggagttttgctc-tatcgcccaggctggagtgcaatgatgcgatctcggctgactgcaacctccacctccagggttcaagcgattctcctgcctcagcctcccgagtagctgggattatagacgcccacc-accatgcctggctgatttttC
i nomLeu3.chr7b             I 2076 C 0
s rheMac3.chr10              86926798 200 +  95678458 agctgggactacaggcacCACTGAGCCCAAA---TAA-----ttttgtttttgagacggagttttgctcttgtcgcccaggctggagtgtaatgacgcaatctcggctcactgcaacctccgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcct-gctgatttttt
i rheMac3.chr10             C 0 I 7429
s macFas5.chr10              87583666 201 -  96509753 agctgggactacaggcaccactgagcccaaa---taa-----ttttgtttttgagacggagttttgctcttgtcgcccaggcggcagtgtaatgacgcaatctcggctcactgcaacctccgcctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt
i macFas5.chr10             C 0 I 7418
s papAnu2.chr10              82411948 202 +  90941950 agctgggactacaggcaccactgagcccaaa--ttta-----ttttgtttttgagacggagttttgctcttgtcacccaggctggagtgcaatgatgcaatctcggctcactgcaacctccgcctccagggttcaagtgattctcctgcctcagcctccagagtagctggggttacaggcacccaccaaccatgcctggctgatttttt
i papAnu2.chr10             C 0 I 7739
s chlSab2.chr19              24672705 206 +  33263144 agctgggagtttaggcaccactgagcccaaa---taattttgttttgtttttgagacggagttttgctcttgtcgcccaggctggagtgcaatgacgcaatctcagctcactgcaacttccacctccagggttcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccaccaaccatgcctggctgatttttt
i chlSab2.chr19             C 0 I 7740
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T
e calJac3.chrUn_GL286373      1917881 10290 -   2117846 I

a score=708776.000000
s hg38.chr22_GL383582v2_alt     56093 1386 +    162811  
s panTro4.chr22              40880618 1393 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37423935 1384 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106630447 1385 - 115148730  
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T
e calJac3.chrUn_GL286373      1917881 10290 -   2117846 I
e chlSab2.chr19              24672911 7740 +  33263144 I
e papAnu2.chr10              82412150 7739 +  90941950 I
e macFas5.chr10              87583867 7418 -  96509753 I
e rheMac3.chr10              86926998 7429 +  95678458 I

a score=21266.000000
s hg38.chr22_GL383582v2_alt     57479 13 +    162811 aaagatacacatg
s panTro4.chr22              40882011 13 +  49737984 aaagatacacata
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37425319 13 +  46535552 aaagataaacata
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106631832 13 - 115148730 aaagatatacaca
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87591285 13 -  96509753 aaagatacacgta
i macFas5.chr10             I 7418 C 0
s papAnu2.chr10              82419889 13 +  90941950 aaagatacacata
i papAnu2.chr10             I 7739 C 0
s chlSab2.chr19              24680651 13 +  33263144 aaagatacacata
i chlSab2.chr19             I 7740 C 0
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T
e calJac3.chrUn_GL286373      1917881 10290 -   2117846 I
e rheMac3.chr10              86926998 7429 +  95678458 I

a score=2175590.000000
s hg38.chr22_GL383582v2_alt     57492 945 +    162811  
s panTro4.chr22              40882024 945 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37425332 943 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106631845 948 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86934427 933 +  95678458  
i rheMac3.chr10             I 7429 C 0
s macFas5.chr10              87591298 933 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82419902 933 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24680664 933 +  33263144  
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T
e calJac3.chrUn_GL286373      1917881 10290 -   2117846 I

a score=4122896.000000
s hg38.chr22_GL383582v2_alt     58437 1480 +    162811  
s panTro4.chr22              40882969 1470 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37426275 1488 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106632793 1513 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86935360 1474 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87592231 1478 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82420835 1490 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24681597 1496 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1928171 1438 -   2117846  
i calJac3.chrUn_GL286373    I 10290 C 0
e mm10.chr15                 82782242 7845 + 104043685 I
e canFam3.chr10              46076944 4986 -  69331447 T

a score=205198.000000
s hg38.chr22_GL383582v2_alt     59917 90 +    162811 Aggtgaggggtga-------ggggtgaggggtgagCACTGACATCAGGCAGGTGACTGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC
s panTro4.chr22              40884439 83 +  49737984 AGGTGAGGGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGACTGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37427763 83 +  46535552 AGGTGAGGGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGACTGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106634306 76 - 115148730 AGGTGAGGGGTGA-------G--------------CACTGACATCAGGCAGGTGACTGACGACCCAACACAACCAGGACCTTGGCA-GGGGCCCAGAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86936834 76 +  95678458 GGGTGACAGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGACT-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87593709 76 -  96509753 gggtgacaggtga-------ggggtgag-------cgctgacatcaggcaggtgacT-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82422325 76 +  90941950 GGGTGACAGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGACT-------CAACACAACCAGGACCTTGGCA-GGGGCCCAGAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24683093 75 +  33263144 -GGTGACAGGTGA-------GGGGTGAG-------CGCTGACATCAGGCAGGTGACT-------CAACACAACCAGGACCTTGGCA-GTGGCCCAGAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1929609 74 -   2117846 -GGTG---------------GGGATGAG-------CACTGACATCAAGCAGGTGACAGATGACTCAACACAACCAGGGCCTTGGCA-AGAGCCCAAAC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46071958 90 -  69331447 AGATAGGGATGGAGCAGGCTGGGGTCAG-------GGCTGGGTCTGGGGAGGCCGCTGCGGCCCCTTCGCCACCGGCGGCTGGTCAGGGGGCCCTGA-
i canFam3.chr10             T 4986 C 0
e mm10.chr15                 82782242 7845 + 104043685 I

a score=228791.000000
s hg38.chr22_GL383582v2_alt     60007 69 +    162811 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
s panTro4.chr22              40884522 69 +  49737984 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
i panTro4.chr22             C 0 I 20
s ponAbe2.chr22              37427846 69 +  46535552 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTATAACAG--GGTCCCAGCTGAAGAG---------CAA
i ponAbe2.chr22             C 0 I 20
s nomLeu3.chr7b             106634382 69 - 115148730 TGGATACAGAAACCAAGTGGGAGCCACTAGACTAATTTATTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
i nomLeu3.chr7b             C 0 I 20
s rheMac3.chr10              86936910 69 +  95678458 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
i rheMac3.chr10             C 0 I 176
s macFas5.chr10              87593785 69 -  96509753 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
i macFas5.chr10             C 0 I 22
s papAnu2.chr10              82422401 69 +  90941950 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
i papAnu2.chr10             C 0 I 22
s chlSab2.chr19              24683168 69 +  33263144 TGGATTCAGAAACCAAGTGGGAGCCACTAGATTCATTTTCTGTACAACAG--GGTCCCAGCTGAGGAG---------CAA
i chlSab2.chr19             C 0 I 20
s calJac3.chrUn_GL286373      1929683 76 -   2117846 TGGATTCAGTAACCAAGTGGGAGCCTCTAGACTAATTTATTGTACAAGAG--G--CACAAGTCAGGGGCTTGATGCCCAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82790087 71 + 104043685 TGGACCAAGAATCTGAGTTGCAGACACAGAACTTGTTTATTGAACACCAATCAGGCCAAACTTGGGGG---------AAG
i mm10.chr15                I 7845 I 17
s canFam3.chr10              46072048 67 -  69331447 GGGACTCGGAAGCCAGGATGGAGCCACCAAACTGGTTTATTGTACCTC----GGCCCCTGCTGAGGAg---------ccg
i canFam3.chr10             C 0 I 32

a score=3600.000000
s hg38.chr22_GL383582v2_alt     60076 1 +    162811 C
s panTro4.chr22              40884611 1 +  49737984 C
i panTro4.chr22             I 20 C 0
s ponAbe2.chr22              37427935 1 +  46535552 C
i ponAbe2.chr22             I 20 C 0
s nomLeu3.chr7b             106634471 1 - 115148730 C
i nomLeu3.chr7b             I 20 C 0
s macFas5.chr10              87593876 1 -  96509753 C
i macFas5.chr10             I 22 C 0
s papAnu2.chr10              82422492 1 +  90941950 C
i papAnu2.chr10             I 22 C 0
s chlSab2.chr19              24683257 1 +  33263144 C
i chlSab2.chr19             I 20 C 0
s calJac3.chrUn_GL286373      1929759 1 -   2117846 C
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46072147 1 -  69331447 C
i canFam3.chr10             I 32 C 0
e mm10.chr15                 82790158 17 + 104043685 I
e rheMac3.chr10              86936979 176 +  95678458 I

a score=1269952.000000
s hg38.chr22_GL383582v2_alt     60077 342 +    162811 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGCGTCACCAGAAAGCCGACGACACGAGAGTGGCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCTATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGT-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCCGGGTGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCCAGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC
s panTro4.chr22              40884612 342 +  49737984 TCTAGCGGGGCACAGCACAAAGCTCATAGGGGGATGGCGTCACCAGAAAGCCGACGACACGAGAGTGGCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGTGCTGCAGCAGGGAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCCGGGTGATAC----CCCTGCAAGACTCCACGGATGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37427936 342 +  46535552 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGCGTCACCAGAAAGCCGACGACATGAGAGTGGCTGGGCTGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGTGCGGCGGCCTGT-----GGGGAGGAGAGGGG-CGTCAGTGAGCCTGGCTCCTGGGCGATAC----CTCTGCAAGACTCCACGGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGTAGGAAGGCCTCCGGCTTCACAAAGTGGCCCTGGACATCCAGGAAGTGTTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106634472 342 - 115148730 TCTAGCGGGGCACAGCACAAAGCTCGTAGTGGGGTGGTGTCACCAGAAAGCCGACGACACGAGAGTGGCTGGGCCGGGGCTGTCCGGTGGGCACCGAGAAGCTGAAGCGATGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGGAGGGGAGGGG-CGTCAGTGAGCCTGGCTCCCAGGCGATAC----CCCTGCAAGACTCCACGGAAGGGGACAGGGAGCTGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC
i nomLeu3.chr7b             C 0 T 11473
s rheMac3.chr10              86937155 347 +  95678458 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGGAAAGCAAAGACACCATGGTGGCTGGGCCGGGGCCGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGGGGAGGGG-TGTCAGTGAGCCTGCCTCCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGAGCATCCAGGAAGTGTTC
i rheMac3.chr10             I 176 C 0
s macFas5.chr10              87593877 347 -  96509753 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGAAAGCCAACGACATGAGAGTGGCTGGGCCGGGGCCGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGGCCTGTGGGGAGGGGAGGGGAGGGG-TGTCAGTGAGCCTGCCTCCCGGGCAGGAC----CCCTGCAAGATTCCACAGAAGGGGACAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGAGCATCCAGGAAGTGTTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82422493 342 +  90941950 TCTAACGGGGCACAGCACAAAGCTCGTAGGGGGAAGGGGTCACCAGAAAGCCAACGACATGAGAGTGGCTGGGCCGGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGT---GAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCACGGCGgcctgtggggaggggaggggaaggg-tgtCAGTGAGCCTGGCTTCCAGGCAATAC----CCCTGCAAGACTCCATGGAAGCAGGCAGGGAGCTGGGCT-CACACAGGCACCTGCTGAGAAAGGCA-GAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24683258 347 +  33263144 TCTAGCGGGGCACAGCACAAAGCTCGTAGGGGGATGGGGTCACCAGAAAGCCGACCACATGAGAGTGGCTGGGCCTGGGCTGTCCGGCGGGCACCGAGAAGCTGAAGCGCTGCAGCAGGCAGGTGAAGAAGAGGAAGAGCTCCATACGGGCCAGGGGCTCCCCAAGGCATGCACGGCGGCCTGTGTGGAGGGGAGGGGAGGGG-TGTCAGTGAGCCTGGCTTCCAGGCAATAC----CCCTGCAAGACTCCATGGAAGCAGGCAGGGAGCCGGGCTCCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGTGGCCCTGAGCATCCAGGAAGTGTTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1929760 341 -   2117846 TCTAGCGGGGCACAGCACAAAGCTGGTAGGGGGAAGGATACACCAGAAAGCCACCGACAGGCAAGTTACTGGGCCGGGGCTGTCCGGCGGGCACAGAGAAGCTGAAGCGCTGTAGCAGGCAGGTGAAGAACAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCGAGGCATGCGCGGCGGCCTGT-----GGGTAGGGGAGGGG-CCTCAGTGAGCATGGGTCCCGGGCGATAC----CCCTGCAAGACTCCACGGAAG-GGATAGGGAGCCAGGCACCCCACAGGCACCTGCTGAGAAAGGCAGGAAGGCCTCTGGCTTCACAAAGCGGCCCTGGGCATCCAGGAAGTGTTC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82790175 344 + 104043685 GCTATCGAGCCACTGCACAGAGCTGATAGGGCTCTGGAGTAACTGGCATTGTATAGATGCCATAATCACTGGGTCTGGGCTGTCCATCGGGCACTGAGAAGCTAAAGCGCTGCAGGAGGCAGGTGAAGAAGAGGAAGAGCTCCATGCGGGCCAGGGGCTCCCCCAGGCATGATCTGCGGCCTGT-----GGGTGGGAGAGGG---TTCAGTTAGTCTAGGACCTCATTGGGGCTTCACCCTCCAAGGCACCCTGAGAAAAGACAGGCAGCCAAGTAGCCTGCAGTCACCTGCTGAGAATGGCATGAAGGCCTCGTGCTTCACAAAGTGGCCCTGGGCATCCAGGAAGTGTTC
i mm10.chr15                I 17 C 0
s canFam3.chr10              46072148 338 -  69331447 CCTAGGGAGGGTCCCCCCAAAACTGGAAAGGGGCTGGAACCTTTCGGAAGGGGAAAACCCCCTGGTCCCTGGGCCCGGGCTTCCCCCCAGGGCCTGAAAAACTTAAACCCTTCCGGAGGGAGGGGAAAAAAAAGAAAAACTCCCTGCGGGCCAGGGGCTCCCCCAAGGAAAACCGGCGGCCTTC-----GGGTGGGGAAAGAACCCCCAAAAAACCCGGGGCCTGGGCCCAAC----CTC--CAAAAATCCCTCTGAAGGGGTGGGAAACCGGGGACCCCCC---CACCTTCAAAAAAAGGCATTAAGGCCCTATGCTTGAAAAAAAGGCCCTGGGGGTCCCAGAAATGCTC
i canFam3.chr10             C 0 C 0

a score=78884.000000
s hg38.chr22_GL383582v2_alt     60419 18 +    162811 GGGGTGGAAGCGGAAGGG
s panTro4.chr22              40884954 18 +  49737984 GGGGTGGAAGTGGAAGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37428278 18 +  46535552 GGGGTGGAAGCGGAAGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623341 18 - 115148730 GGGGTGGAAGCGGAAGGG
i nomLeu3.chr7b             T 11473 C 0
s rheMac3.chr10              86937502 18 +  95678458 GGGGTGGAAGCGGAAGGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87594224 18 -  96509753 GGGGTGGAAGCGGAAGGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82422835 18 +  90941950 AGGGTGGAAGCGGAAGGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24683605 18 +  33263144 GGGGTGGAAGCGGAAGGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930101 18 -   2117846 GGGGTAGAAGCAGAAAGG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82790519 18 + 104043685 AGGATAGAAGCGGAGGGG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46072486 18 -  69331447 CGGGTAAAAACGGAAAGG
i canFam3.chr10             C 0 M 283

a score=580798.000000
s hg38.chr22_GL383582v2_alt     60437 177 +    162811 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCATCATCCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACTGGACTCTAGGATGCTGGGACCC------CCAAGCACACAGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGTG
s panTro4.chr22              40884972 177 +  49737984 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCATCATCCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACTGGGCTCTAGGATGCTGGGACCC------CCAAGCACACAGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37428296 177 +  46535552 CTTCTCCCAGACGGCCTCGTCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGGGCGAGAGTGGGGACTGGGCTGTAGGATGCTGGGACCC------CCAAGCACACGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGCG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623359 183 - 115148730 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGTGTCGTCCCCTGGGCAGGAGATGCAGGGCGAGAGTGGGGACTGGGCTCTAGGATGCTGGGACCCCTGCCACCAAACACACGGGGGACATACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCTGTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86937520 181 +  95678458 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGAGTGAGAGTGGGGACTGGGCTCTAGGATGGTGGGACCCCTGCCACCAAACGCACGGGGGACACACACTGCCTGGCACACAGCTGGACTC--TCAACTAGTCCTGCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87594242 183 -  96509753 CTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACTGGGCTCTAAGATGGTGGGACCCCTGCCACCAAACACACGGGGGACACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82422853 183 +  90941950 CTTCTCCCAGATGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTTGTCCCCTGGGCAGGAGATGCAGGGTGACAGTGGGGACTGGGCTCTAGGATGCTGGGACCCCTGCCACCAAATGCACGGGGGAcacacactgcctggcacacagctggACTCTGTCAACTAGTCCGGCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24683623 183 +  33263144 TTTCTCCCAGACGGCCTCATCCTTCAGCACCGATGACAGGTTGGTGAAGAGCGTCGTCCCCTGGGCAGGAGATGCAGGGTGAGAGTGGGGACGGGGCTCTAGGATGCTGGGACCCCTGCCACCAAACACACAGGGGGGACACACTGCCTGGCACACAGCTGGACTCTGTCAACTAGTCCGGCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930119 179 -   2117846 CTTCTTCCAGATGGCCTCATCCTTCAGCACTGATGACAGGTTGGCGAAGATCGCTGTCCCCTGGGTAGGAGAGGCAGGGAGAGAGTAAGGACTGGGATCTAGGATGCTGGGACCCCTGCCACCAAACACATGGGGGATACACATTGCCCGGCACACAGCTAGACTCT----ACTAGTCCTGCG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82790537 175 + 104043685 CTTCTCCCAGACAGTCTCATCCTTCAGCACGGAGGACAGGTTGGGAATGAGTGTCGTCCCCT-GGCAGGAGGCACATGGTGTGAAGATGGGCCAGGGTG-GGCCTGCCTAGGTCGTGGTCACCAAGTTCACA-GGCACAGCCTCTACCTCACACACGG---GATCCTTGCATTCACTCT--CA
i mm10.chr15                C 0 C 0
e canFam3.chr10              46072504 283 -  69331447 M

a score=264848.000000
s hg38.chr22_GL383582v2_alt     60614 81 +    162811 CCCGAGAAGCTCCAGAGCACCCTCTCCGACCCCATGGCAGGGCGCAGTCACA-----CCT--CCTGGGAGCGCCCACGCTACCCCCTC
s panTro4.chr22              40885149 81 +  49737984 CCCGAGAAGCTCCAGAGCACCCTCTCCGACCCCATGGCAGGGCGCAGTCACA-----CCT--CCTGGGGGTGCCCATGCTGCCCCCTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37428473 81 +  46535552 CCCGAGAAGTtccagagcaccctctccgaccccatggcggggcgcagtcaca-----cct--cccggggccacccaagctgccccctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106623542 81 - 115148730 GCCAAGAAGctcctgagctccctctctgaccctatggtggggagcagtcaca-----cct--cccgggggcacctaagctgccccctt
i nomLeu3.chr7b             C 0 I 11493
s rheMac3.chr10              86937701 81 +  95678458 CCTGAGAAGCTCCTGAGCACCCTCTATGACCCCATGGCAGGGCGCAGTCACA-----CCT--CCTGGGGGTGCCCACACTGCCCCCTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87594425 81 -  96509753 CCCGAGAAGCTCCTGAGCACCCTCTATGACCCCATGGCAGGGCGCAGTCACA-----CCT--CCTGGGGGTGCCCACACTGCCCCCTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82423036 80 +  90941950 CCCGAGAAGCTCCTGAGCACCCTCTCTGACCCCATGGCAGGGTGCAGTCACA-----CCT--CCC-GGGGCGCCCACGCTGCCCCCTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24683806 81 +  33263144 CCCGAAAAGCTCCTGGGCACCCTCTCTGACCCCATGGCAGGGCGCAGTCACA-----CCT--CCCAGGGGCGCCCACGCTGCCCCCTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930298 81 -   2117846 CCCGAGAAGCTCCTGGGCATCCTCTCCAACCCCATAATAGGCCCCAGTCACA-----CCT--CCCAGGGGCACCCAGGCTGCCCCCTC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82790712 83 + 104043685 CCCGTGGAGCCTCTGAGCACCTTCTCTTGTACCAT-CCAAGGCCCTGTGACAAAGTTCCC--ATCTGCAGTGCCTCCTACAACCCC--
i mm10.chr15                C 0 C 0
s canFam3.chr10              46072787 83 -  69331447 CCCCAGAAGCTCCTGGGCACCCTCTCTGTCCCCATGGCAGGGCTAAGGGACT-----CCCCACCCACGGGCGCCCACACGGCCACCCG
i canFam3.chr10             M 283 C 0

a score=1579784.000000
s hg38.chr22_GL383582v2_alt     60695 448 +    162811 TCCCTACAGGTATTGGGGTCCTCCAACATTC--TGGCAGGTCCTGGTCTGCCTTCCCCACTAGACTGG-GGCTCTGGATGGACA--------GGCCAGCCCTGCCTATACT---CTGCACCCCACACCCAGGCTGGGA--CAGTCGATGTGGTGGCATTGAGGACTGGGTGGCCAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTATCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGTGCCAGGCCTACCTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGCAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCACCACACCTGCCCTATCACGTTGTCGAT---CTGTTGGACACGGCCTGGACAGACA
s panTro4.chr22              40885230 448 +  49737984 TCCCTATAAGTATTGGGGTCCTCCAACATTC--TGGCAGGTCCTGGTCTGCCTTCCCCACTAGACTGG-GGCTCTGGATGGACA--------GACCAGCCCTGCCTATACT---CTGCACCCCACACCCAGGCTGGGA--CAGTCGATGTGGTGGCATTGAGGACTGGGTGGCCAGGGTTCCTAGACTGGACCCACCTGGCAGTGGCCATGCCGGGGCTATCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGTGCCAGGCCTACTTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATATGGGTCACACCCAGGGGGACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGCAGGGCATGCGAGCCTGGTCATCCATCTCTGGTCACCGCACCTGCCCTATCACGTTGTCGAT---CTGTTGGACACGGCCTGGACAGACA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37428554 440 +  46535552 tctctacaggca-----------caactttc--tggcaggtcctggtctgtcttccccactagactgg-ggctctggatggaca--------ggccagccctgcctATACT---CTGCACTCCACACCCAGGCTGGGA--CAGTTGATATGGTGGCATTGAGGACTGGGTGGCCAGGGTTCGTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTATCACCAGGGGCTGGTGTTGAGCTGGGGTGAGGAGGGCGCCAGGCCTACGTTAGGGATGCGGAAGCCCTGTACTTCGATGTCACGGGATGTCATGTGAGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTTGCCACACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACATGGCCTGGACAGACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106635116 451 - 115148730 TCCCTACAGGTATTGAAGTCCTCCACCATTC--TGGCAGGTCCTGgtctgtcttccccactagactgg-ggctctggatggaga--------ggccagtcctgcctATACG---CTGCACCCCACAGCCAGGCTGGGA--CAGTCGATGTGGTGGCATTGAGGACTGGGTGGCCAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGgggctggtgctgagctggggtggggagggcGCCAGGCCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATATGAGGCACATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACCCATCTCTGGTCGCCGCACCTGCCCTATCACGTCGTCGATCTCCTGTTGGACACGGCCTGGAGAGACA
i nomLeu3.chr7b             I 11493 C 0
s rheMac3.chr10              86937782 451 +  95678458 TCCCTACAAGCACTGGGGTCCTCCAATATTC--TGGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACT---CTGCACCCCACACCCAGGCTGGGA--CAGTTGATGTGGTGGCATTGAGGACTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGCCTGGTGTTGAGCTGGGGTGAGGAGGGCTCCAGGCCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACGATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTGTCGATCTCCTGTTGGACACGGCCTGGACAGACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87594506 451 -  96509753 TCCCTACAGGCACTGGGGTCCTCCAATATTC--TGGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTGTATGGACA--------GGCCAGCCCTGCCTATACT---CTGCACCCCACACCCAGGCTGGGA--CAGTTGATGTGGTGGCATTGAGGACTGGGTGGCAAGGGTTCCTAGACTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTGTCGATCTCCTGTTGGACACGGCCTGGACAGACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82423116 451 +  90941950 TCCCTACAGGCACTGGGGTCCTCCAATATTC--TGGCAGGTCCTGATCTGTCTTCCCTACTAGACTGG-GGCTCTAGATGGACA--------GGCCAGCCCTGCCTATACT---CTGCACCCCACACCCAGGCTGGGA--CAGTTGATGTGGTGGCATTGAGGACTGGGTGGCCAGGGTTCCCAGAGTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATATCCCCAAAGCGCTGCACCTCATGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTGTCGATCTCCTGTTGGACACGGCCTGGACAGACA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24683887 451 +  33263144 TCCCTACAGGCACTGGGGTGCTCCAATATTC--TGGCAGGTCCTGATCTGTCTACCCCACTAGACTGG-GGTTCTGTATGGACA--------GGCCAGCCCTGCCTCTACT---CTGCACCCGACACCCAGGCTGGGA--CAGTTGATGTGATGGCATTGAGGACTGGGTGGCCAGGGTTCCCAGAGTGGGCCCACCTGGCAGTGGCCATGCTGGGGCTACCACCAGGGGCTGGTGCTGAGCTGGGGTGAGGAGGGCTCCAGGCCTACCTTAGGGATGAGGAAGCCCTGCACTTCGATGTCACGGGATGTCATGTGGGGCATATTCAGGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGCCTGGTCACGCATCTCTGGTCGCCGCACCTGCCCTATCACGTTGTCGATCTCCTGTTGGACACGGCCTGGACAGACA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930379 442 -   2117846 TCCCTAAGAGCATTG-GGCCCCCTGACATTC--TGGCAGGTCCTGGTCTGTCTTCCCCACTAGACT-G-GGCTCTGGATGGACA--------GGCCAGCCCTGACTCTGCT---CTGCACCCCCCACACAGGCT-GGA--CAG----TGTGGTGGCATTGAAGACT-GGCAGCCAGGGTTCCCAGACTAGGCCCACCTGGCAGTGGCTACGCTGGGGCACCCACCAGGGGCTGATGCTGAGCT-GGGTGAGGAGGGCCCCAGGCCTACCTTAGGGATGAGGAAGCCCTGTACTTCAATGTCTCGGGATGTCATGTGGGGCATATTCATGGGAACAATGTCCCCAAAGCGCTGCACCTCGTGAATCACGGCAGTGGTGTAGGGCATGCGAGTCTGGTCACCCATCTCTGGTGGCCGCGCCTGCCCTATCACGTCGTTGATCTCCTGTTGGACACGGCCTGGACAGACA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82790795 373 + 104043685 ------------TTAAGCTCATTTCA----C--TGGCCGTCCTT--------TTCCCCA-------GG-GACTCTTGAGCAACG--------GCTGCAGTGTACTCACACCTAGCTCCATCCTGTCCCCATGTGGAAATCCAGT--GTGTGGTGGTCTTGGAGTTT----------ATCACCCATGTTTGCCCC--------GTGAGGATTCTCGGACCA--------------------------------AGGTGCCCATGCCTACCTTGGGGATGAAGAAGTCTTGGAATTTAATGTCTCGGGATGTCATATGTGGTAAATTTGTTGGGACGATGTCTGCAAAGCGTTGCACCTCATGAATGACCGCGTTTGTGTAGGGCATGCGGGCCTGGTCTGCCATCTCTGGATGCCGCACGTGCCCTATGACCTCGTCGATTTCCTGGTGGACACGGCCTGGATAGATA
i mm10.chr15                C 0 I 75
s canFam3.chr10              46072870 383 -  69331447 TCCCTGTGCACA---GGCTCCTCCAGCATGCTGTGGCACATTTCAGCCTGTCTTCCCCAGCGGCCTGGCAGCTCTGAAGGGACAAGGGGTGGGGCTGGCCCAGCCTCTGCT---CTCCTCCCCCCCCCCAG---------CTGC----------------------------------TCCCCACCCCCAG--CATCAGGCTGTGACCACGGCAGAG---------------------------------GGAGGCCTGCAGACCTACCTTGGGGATGAGGAAGCCCTGCACTTCAGTGTCTCGGGACGTCATGTGGGGCACACCGAGTGGGACGATGTCCCCAAAACGCTGCACCTCATGGATCACGGCCACGGTGAAGGGCATACGGGTCTGGTCTCCCATCTCTGGTAGCTGCTCCCGCCCTATCACCTCATCTATCTCCTGCTGGACACGTCCTAGACACACA
i canFam3.chr10             C 0 C 0

a score=228020.000000
s hg38.chr22_GL383582v2_alt     61143 72 +    162811 CGCGTCCCCACAATGGGTCAGCACCCAGGGGACCAG-CCCTGACACTC----TCCTGCCTCCTGTGTTGGAGGAGGT
s panTro4.chr22              40885678 72 +  49737984 TGCGTCCCCACAATGGGTCAGCACCCAGGGGACCAG-CCCTGACACTC----TCCTGCCTCCTGTGTTGGAGGAGGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37428994 72 +  46535552 TGCGTCCCCACAATGGGTCAGCACCCAGGGGACCAG-CCCTGACGCTC----TCCTTCCTCCTGTGTTGGAGGAGGT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106635567 72 - 115148730 TGCGTCCCCACAATGGGTCAGCACCCAGGGGACCAG-CCCTGACGCTC----TCCTGCCTCCTGTGTTGGAGGAGGT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86938233 72 +  95678458 TGCGTCCCCACAATGGGTCAGCACTCAGGGGACCAG-CCCTGACCCTC----TCCTGCCTCCTGTGTTGGAGGAGGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87594957 72 -  96509753 TGCGAACCCACAATGGGTCAGCACTCAGGGGACCAG-CCCTGACCCTC----TCCTGCCTCCTGTGTTGGAGGAGGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82423567 72 +  90941950 TGCAAACCCACAATGGGTCAGCACTCAGGGGACCAG-TCCTgaccctc----tcctgcctcctgtgtTGGAGGAGGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24684338 72 +  33263144 TGCGAACCCACAATGGGTCAGCACTCAGGGGACCAG-CCCTGACCCTC----TCCTGCCTCCTGTGTTGGAGGAGGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930821 76 -   2117846 TGCGACCTCACAAGGGGTCAGCACCCACGGGACTGG-CCCTGATGCCCTCCTTCCTGCCTCCTGTATTAGAGGAGGT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46073253 65 -  69331447 AGCATCCCCACAGT-GGTCAGAACCCAGGGGTCTGGACTCCGAC--------GTCTGACGCCTG---TGGAGGCAGC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82791168 75 + 104043685 I

a score=2339030.000000
s hg38.chr22_GL383582v2_alt     61215 647 +    162811  
s panTro4.chr22              40885750 646 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37429066 641 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106635639 652 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86938305 642 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87595029 651 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82423639 655 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24684410 651 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1930897 654 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82791243 612 + 104043685  
i mm10.chr15                I 75 I 242
s canFam3.chr10              46073318 614 -  69331447  
i canFam3.chr10             C 0 C 0

a score=48845.000000
s hg38.chr22_GL383582v2_alt     61862 16 +    162811 GTCTCAATCCCTCCTG
s panTro4.chr22              40886396 16 +  49737984 GTCTCAATCCCTCCTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37429707 16 +  46535552 GTCTCAATCCCTCCTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106636291 16 - 115148730 GTCTCAATCCCTCCTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86938947 16 +  95678458 GTCTCAATCTCTCCTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87595680 16 -  96509753 GTCTCAATCTCTCCTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82424294 16 +  90941950 GTCTCAATCTCTCCTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24685061 16 +  33263144 GTCTCAATCTCTCCTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1931551 16 -   2117846 GTCTGGATTCCTCCTA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46073932  9 -  69331447 -------CCCTGCCTG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82791855 242 + 104043685 I

a score=950034.000000
s hg38.chr22_GL383582v2_alt     61878 322 +    162811 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCCTACCTGTCC-CCACCACTCACCTCCCCAAGTCCCTCCCCAAGTGCCAGCCTCCACCCTCTCTCCTtgccctggg--ctgccagaggagaaa--------cctaaaaatcaaaatctccaatgtggacaggaggcacagggtccttggcctttcTTGGTGCCCCCTGACCCGGGCACACCTCTCCCACGACCGTATCTGAGATGTCTCCTCCTCCTCAAGGCCCTTCCTCTAGCAGTGAGCTCTTCTGGAATGTCCTTTCCCAAACCACTCTA
s panTro4.chr22              40886412 322 +  49737984 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCCTGCCTGTCC-CCACCACTGACCTCCCCAAGTCCCTCCCCAAGTGCCAGTCTCCACCCTCTCTCCTTGCCCTGGG--CTGCCAGAGGAGAAA--------CCTAAAAATCAAAATCTCCAATGTGGACAGGAGGAACAGGGTCCTTGGCCTTTCTTGGTGCCCCCTGACCCGGGCACACCTCTCCCACGACCGTATCTGAGATGTCTCCTCCTCCTCAAGGCCCTTCCTCTAGCAGTGAGCTCTTCTGGAATGTCCTTTCCCAAACCACTCTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37429723 310 +  46535552 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCCTGCCTGTCC-CCACCACTGA------------CCTCCCCAAGTGCCAGCCTCCACCCTCTCTCCTTGCCCTGGG--CTGCCAGAGGAGAAA--------CCTAAAAATCAAAATCTCCAATGTGGACAGGAGACACAGGGTCCTTGGCCTTTCTTGGTGTCCCCTGACCCGGGCACACCTCTCCCACGACTGTATCTGAGATGTCCCTTCCTCCTCCAGGGCCTTCTTCTTGCAGTGAGCTCTTCTGGAATGTCCTTTCCCAAACCACTCTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106636307 310 - 115148730 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGCCTCCAGGGAAGACCCAGGGCCTGCCTGTCC-CCACCACTGA------------CCTCCCCAAGTGCCAGCCTCCACCCTCTCTCCTTGCCCTGGG--ATGCCAGAGGAGAAA--------CCTAAAAATCAAAATCTCCAATGTGGACAGGAGGCAcagggtccttggcctttcttggtgccccctgacccgggcacacctctcccatgaccgtatctgagatttcccctcctcctccaggcccttcctctagcagtgagctcttctgcaatgtccttttccaaaccactcta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86938963 321 +  95678458 TGCTCT-GTGTTCACCTGGACCAGTCTCGGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCGGCCTGTCT-CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCGCCTTGCCTTGGG--CTGCCAGAGGAGAAA--------TCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTGGCCTTTCTTGGTGCCCCCTAACCCAGGCATATCTCTCCCCTGACGGTGTCTGAGATTTCTCCTCCTCCTCCAGGCCCTTCCTCTAGCAGCGAGCTCTCCTGGAATATCCTTTCCCAAACCCTTCTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87595696 321 -  96509753 TGCTCT-GTGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCGGCCTGTCT-CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCCTTGCCTTGGG--CTGCCAGAGGAGAAA--------TCT-AAAATAAAAATCTCTAATGTGGACAGGAGGCACAGGGTCCTTGGCCTTTCTTGGTGCCCCCTAACCCAGGCATATCTCTCCCCTGACGGTGTCTGAGATTTCTCCTCCTCCTCCAGGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATATCCTTTCCCAAACCCTTCTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82424310 321 +  90941950 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCGGCCTGTCT-CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCCTTGCCTTGGG--CTGCCAGAGgagaaa--------tct-aaaataaaaatctctaatGTGGATAGGAGGCACAGGGTCCTTGGCCTTTCTTGGTGCCCCCTGACCCAGGCATACCTCTCCCCTCACGGTGTCTGagatttctcctcctcctccaggccctTCCTCTAGCAGTGAGCTCTCCTGGAATGTCCTTTCCCAAACCCTTCTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24685077 321 +  33263144 TGCTCT-GCGTTCACCTGGACCAGTCTCAGGCCCCAGCTGTCTCCAGGGAAGACCCAGGGCCGGCCTGTCT-CCACCACTGACCTCCCCAAGTTCCTCCTCAAGTACCAGCCTCCACCCTCTCTCCTTGCCTTGGG--CTGCCAGAGGAGAAA--------TCT-AAAATAAAAATCTCCAATGCGGACAGGAGGCACAGGGTCCTTGGCCTTTCTTGGTGCCCCCTGACCCAGGCATACCTCTCCCCTCACGGTGTCTGAGATTTCCCCTCCTCCTCCAGGCCCTTCCTCTAGCAGTGAGCTCTCCTGGAATGTCCTTTCCCAAACCCTTCTA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1931567 309 -   2117846 TACTCT-GCCTTCACCTGGACCAGTCTCAGGCCCCAGACCTCTCCAGGGAAGATCCAGGGCCTGCCTGTCC-CCACCATTGA------------CCTCCCCAAGTGCCAGCTTCCACCCTTTCTCTTTGCTCTGGG--CTGGCAGAGGAGAAA--------CCT-AAAATCAAATTCTCCAATGTAAACAGGAGGCACAGGGTTCATGGCCTCTCTTGGTGGTCCCTGACCTGGGCACACCTCTCTCACGACCATGTCTGAGGTTTCCCCTCCTCCTCCAGGCCCTTCCTCTTGCAGTGGGCTCTCCTTGAATATCCTATCCTGAACCCCTCTA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792097 303 + 104043685 TGCTCA-GTGTTTACCTGGACCAGTCACAGTTCTCAGCCTCTTCCGCAATGGACTCAGAATCTGTCCCTAC-CCATCACCTGCT----------TCTTCCCCAGTTCTAGCCTGCATGCTCTCCTGTAGCTCAGGG--TGA--AGAAAAGAAATACTCTACCCTTCAAATATAACAGGCTTGTGTGGTTTCCCTGCA---GGCTCACCCCCTTTCTAG--AGCCATTAACCTTGGTCTGCTCCTCCCCTCCACTTATCTGAGGTTT---GTCAACACCCAAGCCTTTCTCCCTGCACTTGGCCATCACACCAGGCCC-------ACCCACCCTG
i mm10.chr15                I 242 I 43
s canFam3.chr10              46073941 218 -  69331447 TGCTCAGGGGCTCGCCGCCACCAGTCT--GGTCCC-GCCGCCTCCAGGGT---------GCCCGCCCCCCCGCCCCCGTTGA-----CCCGGTTCCGCCCTAAGTCC--GCCTCGATCCTCTTTCCTGGCCCCGGGGACCCCTGAAGGATCAA--------TCT-CGCCTCTAGATCTC-----------GGGGGCTC------------------TGGCGGCTTCCGATGGAGGCGCAAGTgccccgccgccccgcccgcga-----------ccccccagcccg------------------------------------------------
i canFam3.chr10             C 0 C 0

a score=162851.000000
s hg38.chr22_GL383582v2_alt     62200 64 +    162811 TGCAAACCCTGCTCCTTGGAGGTCCGGCTGCAGTCCCGGCACCTCTCAGGAGCTCGCCCTGCAG
s panTro4.chr22              40886734 64 +  49737984 TGCAAACCCTGCTCCTTGGAGGTCCGGCTGCAGTCCCGGCACCTCTCAGGAGCTCGCCCTGCAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430033 64 +  46535552 TGCAAACCCTGCTCCTTGGAGGTCCGGCTGCAGTCCAGGCACCTCTCAGGAGCTCGCCCTGCAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106636617 64 - 115148730 tgcaaaCCCTGCCCCTTAGAGGTCTGGCTGCAGTCCCAGCACCTCTCAGGAACTCGCCCTGCAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86939284 63 +  95678458 TGCAAACCC-ACTCCTCTGAGGCCCCGCTGCAGCCCGGGCACCTCTCAGGAGCTCGCCCTGCAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87596017 63 -  96509753 TGCAAACCC-GCTCCTCTGAGGCCCCGCTGCAGCCCGGGCACCTCTCAGGAGCTCGCCCTGCAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82424631 63 +  90941950 TGCAAACCC-ACTCCTCTGAGGCCCTGCTGCAGCCCGGGCACCTCTCAGGAGCTCGCCCTGCAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24685398 63 +  33263144 TGCAAACCC-ACTCCTCTGAGGCCCCGCTGCAGCCCGGGCACCTCTCAGGAGCTCGCCCTGCAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1931876 64 -   2117846 TGCAAATTCTGCTCCTCAGAGGCCTGGCTGCAGCATCGACACCTCTGAGGAGCTTGCCCTGTGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46074159 25 -  69331447 -------------------------------cgcACGCGCTCCTCCCTGGGGCTCC--------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82792400 43 + 104043685 I

a score=638726.000000
s hg38.chr22_GL383582v2_alt     62264 179 +    162811 AGACCCTGCGGTCCCTCGCTCCACATCTCTCACAGAAAGCCCAGCTCCTCCTTCAATCCCTTCTGAGCTAGGTCCAGTAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCACCCGCAGGTGAGGGAGGCGATCACGTTGCTCGCCGCTTTGTTCAGGAGGCCGTT---------GGGGTGAAA
s panTro4.chr22              40886798 179 +  49737984 AGACCCTGCGGTCCCTCGCTCCACATCTCTCGCAGAAAGCCCAGCTCCTCCTTCAATCCCTCCTGAGCTAGGTCCAGTAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCGCCGCTTTGTTCAGGAGGCCGTT---------GGGGCGAAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430097 188 +  46535552 AGACCCTGCGGTCCCTCGCTCGGCACCTCGCTCAGGAAGCCCGGCTCCTCCTTCAATCCCTCCTGAGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTATTCGAAACGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGCTCACTGCTTTGTTCAGGAGGCCGTTGGGGCGAAAGGGGCGAAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106636681 179 - 115148730 AAACCCTGCGGTCCCTCGCTCCACACCTCGTACAGGAAGCCCGTCTCCTCCTTCAATCCCTCCTCAACTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCGAAGCGGCGCCCGCAGGTGAGGGAGGCGATCACGTTGGTCGCCGCTTTGTTCAGGAGGCCGTT---------GGGGCGAAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86939347 179 +  95678458 AGACCCTGCGGTCCCTCGCTCCGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGGTTTAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATT---------GGGGCGAAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87596080 179 -  96509753 AGACCCTGCGGTCCCTCGCTCCGCACCTCGCGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGGTTCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATT---------GGGGCGAAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82424694 179 +  90941950 AGACCCTGCGGTCCCTGGCTCCGCACCTCACGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGGTTCAGCAGCCTGAGAAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACATTGCTCGCCGCTTTGTCCAGGAGGCCATT---------GGGGCGAAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24685461 179 +  33263144 AGACCCTGCGGTCCCTCGCTCCGCACCTGGGGCAGGAAGCCCGACTCCTCCTTCAATCCCTCCTGTGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCGTACTCAAAGCGGCACCCGCAGGTGAGGGAGGCAATTACGTTGCTCGCCGCTTTGTCCAGGAGGCCATT---------GGGGCGAAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1931940 179 -   2117846 AGTCCCCGCAGTCCCTGGCTCTGCACCTGGGGTAGGAAGCCCGACCCCTCCTTCAATCCTTCCTGCGCTAGGTCCAGCAGCCTGAGGAAGCGAGGGTCGTCATACTCGAAACGGTGCCCGCAGGTAAGGGTGGCAATTACGTTGCTCGCTGCTTTGTCCAGGAGTTCGTT---------GGGGCGGAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792443 178 + 104043685 AGGCCC-ACTGCCCCGAGCCACATACCTCTCCGACGAAGCCAGTGTCTTCTCCTAAGCTTTCCTTCAATGTTTTGAGCATCCTGTTGAAGAAAGGGTCTTCATACTCAAATCGACGAGCATAAATGAGGGAGGCGATCACGTTGCTCACAGCTTTACTTAGGAGGGGGCT---------GGGATTGAA
i mm10.chr15                I 43 C 0
s canFam3.chr10              46074184 163 -  69331447 ----------------CGCCGCGCACCTCACGCAGGAAGCCGGAGTCCTGCTTCAGCGCCTGCTGGGTGAGCTCCAGCAGCTGGAGCAGCCACTGGGCGTCGTACTCTAAGCGGCGCCCTTAGGTGAGCGACGAGATCACGTTGCCTACCGCCTTGATTCTCAGAGCGCC---------GGGGCCGAA
i canFam3.chr10             C 0 I 208

a score=273481.000000
s hg38.chr22_GL383582v2_alt     62443 88 +    162811 GGGGCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCCTTCCCAGTCCTCCACCTTCCCAGTTCCCGCTTTGTGCCCCTCTGCCCA
s panTro4.chr22              40886977 88 +  49737984 GAGGCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCTTTCCCAGTCCTCCACCTTCCCAGTTCCCGCTTTGTGCCCCTCTGCCCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430285 88 +  46535552 GGGGCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCCTTCCCGGTCCTCCACCTTCCTAGTTCCCGCTTTGTGCCCCTCTGCCCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106636860 88 - 115148730 GGGGCGTCCTGGGGGCGGGAGATGCGGGTCAGGGGTTGCCTTCCCGGTCCTCCACCTTCCCAGTTCCCACTTTGTGCCCCTCTACCCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86939526 88 +  95678458 GGGGCATCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGTGCCCCTCTGCCCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87596259 88 -  96509753 GGGGCATCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGTGCCCCTCTGCCCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82424873 88 +  90941950 GGGGCATCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGTGCCCCTCTGCCCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24685640 88 +  33263144 GGGGCATCCTGGGGGCGGGAGATGCGGGTCAGGGGTCGCTTTCCCCGTCCCCCACCTTCCCAGTTCCCGCCTTGTGCCCCTCTGCCCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1932119 87 -   2117846 GGGGCGTCCTGGGGTCGGGAGATGAGGGTTAGGGATCGCCTTTCCTG-CCCCCATGTTCCCAGTTCCCGCCTTGTACCCCTTTGCCCA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792621 78 + 104043685 GGGATGTTCTAGGATT-GGAGATGCAAGCAA------GTCATGATAGTGCTCTTCAGTCCCTGCTCACACTCTCCATCTCT---AACA
i mm10.chr15                C 0 C 0
e canFam3.chr10              46074347 208 -  69331447 I

a score=861995.000000
s hg38.chr22_GL383582v2_alt     62531 263 +    162811 TCACCCACTGGCTTGGTCGGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACCGCTCCAGGGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGTGTCCGTAGTGTGCCAGAAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCGG--GACGGACA---CATGGGCGTGGTCATG---------GAGGCCTTGG---------CCCCGCCCTCCGCCGCCCACTCCAACC---CTGTGCTTTTCCTGGTCTCCCGCAGTCCCTG
s panTro4.chr22              40887065 262 +  49737984 TCACCCACTGGCTTGGTCGGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGC-ACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGTGTCCATAGCGTGCCAGGAGCACCTCTGGGA-----------------------------------------------------------------------------------------------GCGG--GACGGACA---CATGGGCGTGGTCATG---------GAGGCCTTGG---------CCCCGCCCTCCGCCGCCCACTCCAACC---CTGTGCTTTTCCTGGTCTCCCGCAGTCCCTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430373 265 +  46535552 TCACCCACCGGAGTGGTCGGCGAAGGCGGCACAGAGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTGGACACGCAGAAGCGCCTCTGCTCGCGCCACGCGGGCACGTAGCGTGCCAGAAACACCCCTGGGG-----------------------------------------------------------------------------------------------TCGG--GACAGACA---CATGGGAGTGGTCATG---------GAGGCCTTAG---------CCCCACCCTCCGCCGCCCACTCCAACC---CTGTGCTTTTCCTGGTCTCCCGCAGTCCCTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106636948 358 - 115148730 TCACCCACCGGAGTGGTCAGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACTGTTCCAGCGACTTCTTGCCCAAGCCCAAGTTGCGCAAGGTGGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGTGTGCCAGGAACACCCCTGGGGGCGGGACGGACACTTCAGAGCGGGACGGACACATGGGAGCGGGACGGACACATGGGAGCGGGACTGACACATGGGAGCGGGACTGACACATGGGAGCGG--GACGGACA---CATGGGCGTGGTCATG---------GAGGCCTTGG---------CCCCGCCCTCTGCCGCCCACTCTAACC---CTGTGCTTTTCCTGGTCTCCCGCAGTCCCTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86939614 263 +  95678458 TCACCCACCGGCTTGGTCGGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GTGG--GATGGACA---CGTGGGCATGGCCATG---------AAGGCCTTGG---------CCCCGCCCTCCACCACCCACTACAACC---CTGTGGTTTTCCTGGTCTTCCGTGGTCCCTG
i rheMac3.chr10             C 0 I 15
s macFas5.chr10              87596347 263 -  96509753 TCACCCACCGGCTTGGTCGGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GTGG--GATGGACA---CGTGGGCGTGGCCATG---------AAGGCCTTGG---------CCCCGCCCTCCACCACCCACTACAACC---CTGTGGTTTTCCTGGTCTTCCGTGGTCCCTG
i macFas5.chr10             C 0 I 9
s papAnu2.chr10              82424961 263 +  90941950 TCACCCACCGGCTTGGTCAGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGTTGCGCAAGGTCGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGGCCATAGCGCGCCAGCAACACCCCTGGGG-----------------------------------------------------------------------------------------------GTGG--GATGGACA---CGTGGGCGTGGCCATG---------AAGGCCTTGG---------CCCCGCCCTCCACCGCCCACTACAACC---CTGTGGTTTTCCTGGTCTTCCGTGGTCCCTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24685728 263 +  33263144 TCACCCACCGGCTTGGTCGGCGAAGGCGGCAC--AGAGGCAGGCGGCCTCCTCGGTCACCCACTGCTCCAGCGACTTCTTGCCCAGGCCCAAGCTGCGCAAGGTAGACACGGAGAAGCGCCTCTGCTCGCGCCACGCGGGCCCGTAGCGCGCCAGGAACACCCCTGGGG-----------------------------------------------------------------------------------------------GCGG--GATGGACA---CGTGGGCGTGGCCATG---------AAGGCCTTGG---------CCCCGCCCTCCACCGCCCACTACAACC---CTGTGGTTTTCCTGGTCTTCCGTGGTCCCTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1932206 261 -   2117846 TCACCCACCGTCATAGTTGTTGAAGGCGAGAC--AGAGGCAGGCAGCTTCCTTGGTCACCCACTGCTCCAGCAACTTCTTGCCCAGCCTCAAGTTGCGCAAGGTGGACACGCAGAATCGCCTCTGCTCGCGCCACGCGAGACCATAACGAGCCATGAACACCCCTGAGG-----------------------------------------------------------------------------------------------ACCG--GATGG--A---CGTGTGTGTGGCCATG---------AAGGCCTCGG---------CCCCACTCTCTGCTGCCTACTCCAACC---CTGCACTCCCCTTGGTCTCCGGCAGTTCCTC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792699 230 + 104043685 TCACCCACCGGCCTCCTTGGTGAAAGCATCGC--AGAGGTGGCCAGCCTCCTCTGTCACCCACTGCTCCAGTGATTTCTTGCCCAGGCCGAAGTCACGCAGGGTAGACACAGAAAATCGCCGCTGCTCTCGCCACTCGGGCCCGTAAGGTGCAAGGATCACACCTGCAG----------------------------------------------------------------------------------------------------------ACA---TATCTGTGTGTAACTG---------AGGGC---------------------------------ACCTAGCT---ATGTGGTCTCTTCTGTTCCCAACATTTCTCT
i mm10.chr15                C 0 C 0
s canFam3.chr10              46074555 219 -  69331447 -------------------------------------------------------TCACCCACTGCTCCAGGGACTTCTTGCCCAGGCCGAAGTTGCGCAGGGTGGACAGCGAGAAGCGCCGCTGCTCGCGCCACGCACGCCCGTAGCGCGCCAGGAACAACCCTGggg-----------------------------------------------------------------------------------------------gcgggcgaggggcgggccgtgggcggggctccgcggcggggcggggcCGTGGGGCTCCCCCCCCCCCCCCCCGCTCCCCACCGCCACTAAATCGCGCCCACTCTG-----------------
i canFam3.chr10             I 208 C 0

a score=-3255.000000
s hg38.chr22_GL383582v2_alt     62794 6 +    162811 --GCCCTG
s panTro4.chr22              40887327 6 +  49737984 --GCCCTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430638 6 +  46535552 --GCCCTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637306 6 - 115148730 --GCCCTG
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87596619 4 -  96509753 ----GCTG
i macFas5.chr10             I 9 I 2
s papAnu2.chr10              82425224 4 +  90941950 ----GCTG
i papAnu2.chr10             C 0 I 2
s chlSab2.chr19              24685991 4 +  33263144 ----GCTG
i chlSab2.chr19             C 0 I 2
s calJac3.chrUn_GL286373      1932467 6 -   2117846 --GCCCTG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792929 3 + 104043685 -----GTG
i mm10.chr15                C 0 I 1
s canFam3.chr10              46074774 7 -  69331447 ACACCCT-
i canFam3.chr10             C 0 C 0
e rheMac3.chr10              86939877 15 +  95678458 I

a score=168501.000000
s hg38.chr22_GL383582v2_alt     62800 57 +    162811 TCCAGCTGGGCA--CAGGGC-CT-GCTC--TTTGCTCACTCACCTTGCTTG-------GGTCTTGGCCCC
s panTro4.chr22              40887333 57 +  49737984 TCCAGCTGGGCA--CAGGGC-CT-GCTC--TTTGCTCACTCACCTTGCTTG-------GGTCTTGGCCCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430644 57 +  46535552 TCCAGCTGGGCA--CAGGGC-CT-GCTC--TTTGCTCACCCACCTTGCTTG-------GGTCTTGGCCCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637312 58 - 115148730 TCCAACTGGGCA--CAGGGC-CT-GCTC-TTTTGCTCACCCACCTTGCTTG-------GGTCTTGGCCCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86939892 57 +  95678458 TCCAGCAGGGCA--CCGGGC-CT-GCTC--TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC
i rheMac3.chr10             I 15 C 0
s macFas5.chr10              87596625 57 -  96509753 TCCAGCAGGGCA--CCGGGC-CT-GCTC--TTTGCTCACCTACTTTGCTTG-------GGTCTTGGCCCC
i macFas5.chr10             I 2 C 0
s papAnu2.chr10              82425230 57 +  90941950 TCCAGCAGGGCA--CCGGGC-CT-GCTC--TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC
i papAnu2.chr10             I 2 C 0
s chlSab2.chr19              24685997 57 +  33263144 TCCAGCAGGGCA--CTGGGC-CT-GCTC--TTTGCTCACCTACCTTGCTTG-------GGTCTTGGCCCC
i chlSab2.chr19             I 2 C 0
s calJac3.chrUn_GL286373      1932473 57 -   2117846 TCCAGCTGGGCA--CAGGGT-CC-ACTC--TTTGCTCACCCACTTTGCTCA-------AGTCTTGTCCCT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792933 46 + 104043685 TCAGTCTTAGCAGTCAGTGC-CCAGCAC--TTTTCTAGCACATATTG---------------------GC
i mm10.chr15                I 1 C 0
s canFam3.chr10              46074781 67 -  69331447 TCCCGCCGGGGA--CAGGTCTCT-GCCCGCGTTGCTCGCCGGCGCTTCTCGGCCGGCAGGTGCTGGCCCC
i canFam3.chr10             C 0 I 209

a score=207590.000000
s hg38.chr22_GL383582v2_alt     62857 86 +    162811 ACCTTG-GCTCTTCCGACCCTGACTGCCTTTCCACTCAGGGAAGATCCCGCCCGTCCCGCCCCGCCC-----ATACTGAGCCCACAGCAGAG
s panTro4.chr22              40887390 91 +  49737984 ACCTTG-GCTCTTCCGACCCTGACTGCCTTTCCACTCAGGGAAGATCCCGCCCGTCCCGCCCCGCCCCGCCCATACTGAGCCCACAGCAGAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430701 91 +  46535552 ACCTTG-GCTCTTCCGACCCTGACCGCCTTTCCACTCAGGGAAGATCCCGCCCGTCCTGCCCCGCCCCGCCCATACTGAGCCCGCAGCAGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637370 91 - 115148730 ACCTTG-GTTCTTCCGACCCTGACCGCCTTTCCACTCAGGGAAGATcccgcccgtcccgccccgtcccgcccATCCTGAGCCTGCAGCAGAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86939949 86 +  95678458 ACCTTG-GGTCTTCCGACCCTGACTGCCTTTCCACTCAGGGAAGATCCCGCCCGCCCCGCCCTGCCC-----ATATTGAGCCGGCAGCACAG
i rheMac3.chr10             C 0 I 48
s macFas5.chr10              87596682 86 -  96509753 ACCTTG-GCTCTTCCGACCCTGACTGCCTTTCCACTCAGGGAAGATCCCGCCCGCCCCGCCCTGCCC-----ATATTGAGCCCGCAGCACAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82425287 86 +  90941950 ACCTTG-GCTCTTCCGACCCTGACTGCCTTTCCACTCAGGGAAGATCccgcgcgccccgccccgccc-----atACGGAGCCCGCAGCACAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686054 77 +  33263144 ACCTTG-GCTCTTCCGACCCTGACTGCCTTTCCACTCAGGGAAGAT---------CCCGCCCTGCCC-----ATATTGAGCCCGCAGCACAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1932530 82 -   2117846 ATCTCG-GCTCTGCCCACCCTGA----CTTTCCACTGAGGAAAGATCCCGCTGGCCCAGCCAGGTCC-----TCACTGAGCCGGCAGCACAG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82792979 37 + 104043685 ACCTTGCATTCCTTAGGCTCCA-----CCCTCCACCCCAGTG--------------------------------------------------
i mm10.chr15                C 0 C 0
e canFam3.chr10              46074848 209 -  69331447 I

a score=44269.000000
s hg38.chr22_GL383582v2_alt     62943 42 +    162811 TCCATCCCGGCTTCTAGACACCCGCTTCCAGCTGGGAAAGGC
s panTro4.chr22              40887481 42 +  49737984 TCCATCCCGGCTTCTAGACACCCGCTTCCAGCTGGGAAAGGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430792 42 +  46535552 GCCATCCCGGCTCCTAGACACCCGCTTCCAGCTGGGAAAGGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637461 42 - 115148730 GCCATCCCGGCTTCTAGACACCCGCTTCCAGCTGGGAAAGGC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87596768 30 -  96509753 ------CTGG------GACACGGGCTTCCAGTTGGGAAAGGC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82425373 30 +  90941950 ------CTGG------GACACCGGCTTTCAGTTGGGAAAGGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686131 30 +  33263144 ------CTGG------GACACCGGCTTTCAGTTGGGAAAGGT
i chlSab2.chr19             C 0 I 13
s calJac3.chrUn_GL286373      1932612 38 -   2117846 ----GCGCGGTCCCCGGATACCTGCCTCCAGCTGGGAAACGT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82793016  8 + 104043685 ----------------------TTTTTCCC------------
i mm10.chr15                C 0 C 0
e canFam3.chr10              46074848 209 -  69331447 I
e rheMac3.chr10              86940035 48 +  95678458 I

a score=11296.000000
s hg38.chr22_GL383582v2_alt     62985 13 +    162811 GCCAGCTCCGCCC
s panTro4.chr22              40887523 13 +  49737984 GCCAGCTCCGCCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430834 13 +  46535552 GCCGGCTCAGCCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637503 13 - 115148730 GCCGGCTCCGCCC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87596798 13 -  96509753 TCGGGCTGCTCTT
i macFas5.chr10             C 0 I 1
s papAnu2.chr10              82425403 13 +  90941950 TCGGGCTGCTCTT
i papAnu2.chr10             C 0 I 1
s calJac3.chrUn_GL286373      1932650 13 -   2117846 ACCGGCCTCGCCC
i calJac3.chrUn_GL286373    C 0 I 1
e mm10.chr15                 82793024  0 + 104043685 C
e canFam3.chr10              46074848 209 -  69331447 I
e chlSab2.chr19              24686161 13 +  33263144 I
e rheMac3.chr10              86940035 48 +  95678458 I

a score=97.000000
s hg38.chr22_GL383582v2_alt     62998 4 +    162811 ACCC
s panTro4.chr22              40887536 4 +  49737984 ACCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430847 4 +  46535552 ACCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637516 4 - 115148730 ACCC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87596812 3 -  96509753 ACC-
i macFas5.chr10             I 1 I 1
s papAnu2.chr10              82425417 3 +  90941950 ACC-
i papAnu2.chr10             I 1 I 1
s chlSab2.chr19              24686174 3 +  33263144 ACC-
i chlSab2.chr19             I 13 I 1
s calJac3.chrUn_GL286373      1932664 3 -   2117846 GCT-
i calJac3.chrUn_GL286373    I 1 C 0
e mm10.chr15                 82793024 0 + 104043685 C
e canFam3.chr10              46074848 209 -  69331447 I
e rheMac3.chr10              86940035 48 +  95678458 I

a score=282108.000000
s hg38.chr22_GL383582v2_alt     63002 119 +    162811 GGTTCCTGGTGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCTTCCTCCCGCCCACAGACTCGCACCTCCCCAATGGAAGTGGTTTCCTGGCTCGCTGTCCCCAACCCACTCA
s panTro4.chr22              40887540 119 +  49737984 GGTTCCTGGTGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCCTCCTCCCGCCCACAGACTCGCACCTCCCCAGTGGAAGTGGTTTCCTGGCTCGCTGTCCCCAACCCACTCG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430851 119 +  46535552 GGTTTCTGGCGGGTCTCGGCAGTTGCCCCGCCCACT---CACAAGCCCCTCTTCCCCCCGCCCACACACTCGCACCTCCCCAGTGGAAGGGGTTTCCTGGCTCGCTGTCCCCAACCCACTCG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637520 119 - 115148730 GGTTCCTGGCGGGTCTTGGCAGTTGCCCCGCCCACT---CATAAGCCCCTCTTCCTCCTGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCTGGCTCGCTGTCCCCAACCCACTCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86940083 122 +  95678458 GGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCTGTCCGCTGTCCCCAACCCACTCT
i rheMac3.chr10             I 48 C 0
s macFas5.chr10              87596816 122 -  96509753 GGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACTCACCACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCAGTGGAAGTGGTTTCCCGGTCCGCTGTCCCCAACCCACTCT
i macFas5.chr10             I 1 C 0
s papAnu2.chr10              82425421 122 +  90941950 GGATCCTGGCAGGTTTGTGCAGTTGccccacccactcaccacaagccccacctcctcccgcccacacactcgcacctccccaGTGGAAGTGGTTTCCCGGTCCGCTGTCCCCAACCCACTCT
i papAnu2.chr10             I 1 C 0
s chlSab2.chr19              24686178 119 +  33263144 GGATCCTGGCAGGTCTGTGCAGTTGCCCCACCCACT---CACAAGCCCCGCCTCCTCCCGCCCACACACTCGCACCTCCCCCGTGGAAGTGGTTTCCCGGTCCGCTGTCCCCAACCCACTCT
i chlSab2.chr19             I 1 C 0
s calJac3.chrUn_GL286373      1932667  92 -   2117846 GGCTCTTGTTAGGTCTAGGC----------CCCGTC--------------------CCCACCCACAAGCTCACACCTCCCCAGAGCAGGTGGTGTCGTGGCCCGCTGTCCCCGGCCCACTTG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82793024  52 + 104043685 ----------------------TTGCCTTGCCGGAC---CACAT------------------------------CATCTCCATTAG------------GTCTGTCTATCTTCTGCTCAC---
i mm10.chr15                C 0 C 0
e canFam3.chr10              46074848 209 -  69331447 I

a score=1114952.000000
s hg38.chr22_GL383582v2_alt     63121 319 +    162811 CTGGCC-------------------CACAACCCCGCGCCCTCTCAGCCCAGCTTGGGCTACGGTCACCGCCCACCCAGGACCCACGGAAACGCAGTCTCTGT-CCCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCGATGCCCAGGACCTGGTAGATGGGCGCAGGCGGGCGGTCGGCGGTGTCCTCGCCGCAGGTCACCAGAGCCTCACGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCATCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGTGCCGCAGCTGTAGAGGGAGGGTCAGGGCCTCCGTTGGGT-CAGGGCCTCCATCAG
s panTro4.chr22              40887659 338 +  49737984 CTGGCCTTTCTGTGTGTCCCAAGTCCACAACCCCGCGCCCTCTCAGCCCAGCTTGTGCTACGGTCACCGCCCACCCAGGACCCACGGAAACGCAGTCTCTGT-CCCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCGACGCCCAGGACCTGGTAGATGGGCGCAGGCGGGCGGTCGGCGGTGTCCTCGCCGCAGGTCACCAGCGCCTCACGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCAAAGCGGTGCTGCAGCTGTAGAGGGAGGGTCAGGGCCTCCGTTGGGT-CAGGGCCTCCGTCAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37430970 322 +  46535552 CTGGCCTTTCTGTGTGTCCCAAGTCCACGACCCCGCGCCCTCTCAGCCCAGCTTGGGCTACGGTCACCGCCCACCCGGGATCCACGGAAACGAGGTCTCTGTCCCCCCACCGCCG---CTTGCCTTGGGAGCGCGGTCCCATGCCCAGGACCTGGTAGATGGGCGCAGGCGGGCGGTCGGCGGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGCCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGTGCCGTAGCTGTAGAGGGA-----------------GGGT-CAGGGCCTCCATCAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637639 321 - 115148730 CTGGCCTTTCTGTGTGTCCCAAGTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACCCGGGACCCACGGAAACGAGGTCTCTGT-CCCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCGATGCCCAGGACCTGGTAGATGGGCGCAGGCGGGCGGTCGGCGGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACAGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGTGCCGCAGCTGCAGAGGGA-----------------GGGT-CAGGGTCTCCATCAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86940205 321 +  95678458 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCACAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGT-CCCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCGATGCCCAGGACCTGGTAGATGGGCACAGGCGGGCGGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAACTGCAGAGGGA-----------------GGGT-CAGGGCCTCCGTCAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87596938 321 -  96509753 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCACAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGT-CCCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCGATGCCCAGGACCTGGTAGATGGGCACAGGCGGGCGGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAGAGGGA-----------------GGGT-CAGGGCCTCCGTCAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82425543 321 +  90941950 CTGGCCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGT-ACCCCACCGCCG---CTTGCCTTGGGAGCGTGGCCCGATGCCCAGGACCTGGTAGATGGGCACAGGCGGGCGGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAGAGGGA-----------------GGGT-CAGGGCCTCTGTCAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686297 321 +  33263144 CTGGGCTTTTTCTGTGTCCCAACTCCACGACCCCGCGCCCTCTCGGCCCAGCTTGGGCTACGGTCACCGCCCACTCAGGGCCCACGGAAACGAGGTGTCTGT-CCCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCGATGCCCAGGACCTGGTAGATGGGCACAGGCGGGCGGTCGGCAGTGTCCTCGCCGCAGGTCACCAGCGCCTCGCGCACGGCCGCCAGCCCATTGAGCACGACCACCGGCGTCCAGGCCAGCTGCAGGCTGAACACGTCCCCGAAGCGGCGCCGCAGCTGTAGAGGGA-----------------GGGT-CAGGGCCTCCGTCAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1932759 318 -   2117846 CTGGCCTTTCTCAGTGTCCCACGTCCACGACTGTGCGCTCTCTTGGCCCAGCTCAGGCTCCGGTCACCACCCACCCGGGTCCCATGGAAAC--AGTCTCTGT--CCCCACCGCCG---CTTGCCTTGGGAGCGCGGCCCAATGCCGAGGACCTGGTTGATGGGCGTAGGTGGGCGGTCGGCGGTGTCCTCGCCCTGGGTCACCAGCGCCTCATGCACAGCCTCCAACCCGTTGAGCACGACCACTGGAGTCCAGACCAGCTGCAGGCTGAACACATCCCCAAAGCGGCGCCGCAGCTTCAGAGGGA-----------------GAGT-TAGGGCCTCTGTCAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82793076 264 + 104043685 -------------------------------------CCCTCTCAAGCC--------CTACTCTCCCTGC----------------------------CTTG-CCCCCACTATAGAGCTTTGCCTTTTGATTTGTGCCCATAGCCTATGTGATTATAGATGGGCATTAGGGGGCGGTCAGAAGTGTCCTCTCCATAGGTCACCAGCAGTTCCCGCACTGCCTTCAGTCCGTTGACCACAACCACGGGCTTCCAGGCCATCTGTAGGCTGAACACATTGCCATAGCGGTTTTGAAGCTGAAATAGGA----CAGAGCACATAGGAAGT-AGAGGTTTCCAGCAG
i mm10.chr15                C 0 I 630
s canFam3.chr10              46075057 250 -  69331447 ------------------------------------------CTGGCCCA-------------TCCCCGC-----CAGGCCCCGGG------------CTGC-GCCCCTCCCCCG---CTTGCCTTGGGATTCTGGCCCCAAACCCAGGTGGTCATAGATCGGCATAGGTGGGCGGTCGGCAGTGTCCTCGCTGCGGTGCACCAGGGCCTCGCGCACCGCCTCCAGGCCGTTGAGCACGACCACCGGCGTCCAGGCCAGCTCCAGGCTGAACACGTTTCCGAAGCGGCCTTGCAGCTGCAGGCCAC-----------------GGGTGGAGGGCGGGGGTCAA
i canFam3.chr10             I 209 C 0

a score=214612.000000
s hg38.chr22_GL383582v2_alt     63440 71 +    162811 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAGTCCTAT---TTGAACCTTAGACGACCCTCGGGGCTACCAGGAGT
s panTro4.chr22              40887997 71 +  49737984 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAGTCCTAT---TTGAACCTTGGACGACCCTCGGGGCTACCAGGAGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431292 70 +  46535552 GCCAGGGT-CCCCCAGGCTGCAGG-TCCTAGTTCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAAGAGT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106637960 70 - 115148730 GCCA-GGTCCCCCCAGACTGCAGG-TCCTAGTCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86940526 71 +  95678458 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAGTCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87597259 71 -  96509753 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAGTCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82425864 71 +  90941950 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAGTCCCAA---GTGAGCCTTGGGCGACCCCCGGGGCTACCAGGAGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686618 67 +  33263144 GCCAGGGTCCCCCCAGACTGCAGG-TCCTAGTCCCAA---GTGAGCCTTGGGCGACCCCCGGTGATATCAG----
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933077 69 -   2117846 GCCAGGGT-CCCCCAGCCTGCAGG-TCCTAGTTCCAA---ATGGGCCTTGGGCGACCCCTGGGGCTTCCAG-AAT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46075307 75 -  69331447 GTCCGGTCCCCACCAGGCTGCAGGCCCCCAGTCTCGGGGTGCTAGCCTTGGGGCACCCCTGGGGCCAGCAGCACT
i canFam3.chr10             C 0 I 33
e mm10.chr15                 82793340 630 + 104043685 I

a score=121317.000000
s hg38.chr22_GL383582v2_alt     63511 47 +    162811 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCCGATCCTGGGGCGGGGA
s panTro4.chr22              40888068 47 +  49737984 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGGGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431362 47 +  46535552 GAGCAGGTGGAAGGAGGAGACCTGGCCTCCTGATCCTGGGGAGAGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638030 47 - 115148730 GAGCAGGTGGAAGGAGGAAACCTGGCCTCCTGATCCTGGGGCGGGGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86940597 45 +  95678458 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG--
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87597330 45 -  96509753 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG--
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82425935 45 +  90941950 GAGCAGGTGCAAGGAGGAGACCCGGCCTCCTGATCCTGGGGCGTG--
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686685 45 +  33263144 GAGCAGGTGGAAGGAGGAGACCCAGCCTCCTGATCCTGGGGCGTG--
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933146 44 -   2117846 GAGTAGGTGCAAGGAG---CCCCAGCCTCCTGACCCTGGGGCAGGGA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075382 33 -  69331447 I

a score=347221.000000
s hg38.chr22_GL383582v2_alt     63558 122 +    162811 T-GGGGTCACACCTTCTGTGATGGAGGAACTCAGTTTGGATGCGTCACC----CAGGTATGACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGCATCCCATTCC-CAGATGATGGTCC
s panTro4.chr22              40888115 122 +  49737984 T-GGGGTCACACCTTCTGTGATGGAGGAACTCAGTTTGGATGCGTCACC----CAGGTATGACCTTGCAAGAGTCACCAAAATTGCCGAGAGGCCCCAGTTAGCATCCCATTCC-CAGATGATGGTCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431409 124 +  46535552 TGGGGGTCACACCTTCTAGGATGGAGGAACTCAGTTTGGATGCGTCAAC----CAGGTATGACCTTGCAAAAGTCACCAAACTTGCCGATAGGCCCCAGTTAGCATCCCATTTTACAGATGATAGTCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638077 106 - 115148730 TGGGGGTCACACCTTCTAGGATGGAGGAACT----------------------CAGGTATGACCTTGCAAGAGTCACCAAAATTGCCCATAGGCCCCAGTTAACATCCTATTTTACAGATGATGGTCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86940642 122 +  95678458 --GGGGTCACACCTTCTACGATGGAGGAACTCAGTTTGAATGCGTCACC----CAGCTGTGACTTTGCAAGAGTCACCGAAATTGCCAATAGGCCCCAGTTAGCATCCCATTTTACAGCTGATGGTCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87597375 122 -  96509753 --GGGGTCACACCTTCTACGATGGAGGAACTCAGTTTGAATGCGTCACC----CAGCTGTGACTTTGCAAGAGTCACCGAAATTGCCAATAGGCCCCAGTTAGCATCCCATTTTACAGCTGATGGTCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82425980 122 +  90941950 --GGGGTCACACCTTCTACGATGGAGGAACTCAGTTTGAATGCGTCACC----CAGCTATGACTTTGCAAGAGTCACCGAAATTGCCAGTAGGCCCCAGTTAgcatcccattttacagctgatgGTCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686730 118 +  33263144 --GGGGTCACACCTTCTACGAT----GAACTCAGTTTGGATGCATCACC----CAGCTATGACTTTGCAAGAGTCACCGAAATTGCCAATAGGCCCCAGTTAGCATCCCATTTTACAGCTGATGGTCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933190 121 -   2117846 TGGGGGTCACATCTTCTATGATGGAGGAACTCACTATGGACGCCTCATT----CAGGTATGACCTTGCAAGAATCACTGAAATTGCCGACAGGCCACAGTTAGCACCCCATTTTACA---GATGGTCT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46075415 125 -  69331447 -TGGGGTCACACTCTCTACGGAGGAGGGGCTGCCGCTGGATCAGACCTCTTCTTAGCTCTGACTTTGCAAAGGTCGCCAAAATTGTCAGTGGGCCAT-GTTAG-atccccttctacaggtgaagaaac
i canFam3.chr10             I 33 I 99
e mm10.chr15                 82793340 630 + 104043685 I

a score=214919.000000
s hg38.chr22_GL383582v2_alt     63680 75 +    162811 ATGCCGGTGAGCAGTGAGGCCCGAGGACCCACAG--------TGCAAAAGGTTTGAACCGGGTCCACTATA-TCCCTTCATCCT
s panTro4.chr22              40888237 75 +  49737984 ATGCCGGTGAGCAGTGAGGCCTGAGGACCCACAG--------TGCAAAAGGTTTGAACCGGGTCCACTATA-TCCCTTCATCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431533 74 +  46535552 ATGCCGGTGAGCGGTGAGGCCCGAGGACCCACAG--------TGCAAAAGGTTTGAACCAGGT-CACTATA-TCCCTTCATCCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638183 75 - 115148730 ATGCCGGTGAGCAGTGAGGCCCGAGGACCCACAG--------TGCAAAAGGTTTGAACCGGGT-CACTGCACCCCCTTCATCCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86940764 74 +  95678458 ATGCCGGTGAGCAGTGAGGCCTGAAGACCCACAG--------TGCAAAAGGTTTGAACCGGGT-CACTATA-TCCCTTCATCCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87597497 74 -  96509753 ATGCCGGTGAGCAGTGAGGCCTGAAGACCCACAG--------TGCAAAAGGTTTGAACCGGGT-CACTATA-TCCCTTCATCCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82426102 74 +  90941950 ATGCCGGTAAGCAGTGAGGCCTGAAGACCCACAG--------TGCAAAAGGTTTGAACCTGGT-CACTATA-TCCCTTCATCCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686848 74 +  33263144 ATGCTGGTGAGCAGTGAGGCCTGAAGACCCACAG--------TGCAAAAGGTTTGAACCGGGT-CACTATA-TCCCTTCATCCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933311 82 -   2117846 ATGCTGGTGAGCAGTGAGGCAAGAGAACCCAAAGGTTTCTCTTGCAAAAGGTTTGAACAGTGT-TACTACA-CCCCTTCATCCT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I

a score=599020.000000
s hg38.chr22_GL383582v2_alt     63755 305 +    162811 TGATTTCTAACTTACTCAttta-ttt------------------agaccatgtctggctctgtcacccaggctggagcgcaatggcgcgatcttggctcactgcaacctccacctcccgggttcaagcaattcacctgcctcagcctcccatgtagctgggattacaggtgcccaccaccgtgccccgctaa-tttttgtattt-ttagtagaggcagggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgatccccccaccttggtctcccaagatgctgggattacaggtgtgagccaccgcgcccagccG
s panTro4.chr22              40888312 305 +  49737984 TGATTTCTAACTTACTCAttta-ttt------------------agaccatgtctggctctgtcacccaggctggagcgcaatggcacgatcttggctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagcctcccatgtagctgggattacaggtgcccaccaccgcgccccgctaa-tttttgtattt-ttagtagaggcagggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgatccccccaccttggtctcccaagatgctgggattacaggtgtgagccaccgtgcccagccG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431607 303 +  46535552 CGATTTCTAACTTACTCAttta-ttt------------------agaccatgtctggctctgtcacccaggctggagtgcaatggcgcgatcttggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccaagtatgtgggattacaggtgcccaccaccgcgccccactaa-tatttgtattt-ttagtaga--cagggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgatccccccaccttggtctcccaagatgctgggactacaggtgtgagccaccgtgcctagccG
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86940838 325 +  95678458 CGATTTCTAACTTACTCAtttc-ttttttttttttttttttttgagacggagtctcgctctgtagcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctccggcctcagcctccagagtagctgggactacaggtgcccgccacctctcccggctagttttttgtatttcttagtagagacggggtttcacggtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccA
i rheMac3.chr10             C 0 I 16
s macFas5.chr10              87597571 326 -  96509753 CGATTTCTAACTTACTCAtttctttttttttttttttttttttgagacggaatctcgctctgtagcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggttcacgccattctccggcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtatttcttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82426176 304 +  90941950 CGATTTCTAACTTATTCATTTC-TTT------------------AGACCatgtctggctctatcacccaggttggagtgcaatggtgcgatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccggctaa-tttttgtattt-ttagtagagac-aggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgttagccaccgtgcccagccg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24686922 304 +  33263144 TGATTTCTAACTTATTCAtttc-ttt------------------ggaccatgtctggctctgtcacccaggttggagtgcaatggtgctatcttggctcactgcaacctccacctcccgggttcaagcaattctcctgcctcagtctcccaagtagctgggattacaggtgcccgccaccgcaaccggctaa-tttttgtattt-ttagtagagac-aggtttcaccatgttggccaggctggtctccaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgtgagccaccgtgcccagccG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933393 302 -   2117846 CGATTTTCTTCCCCCCCACCCC-T--------------------agatggagtcttgctcagttacccaggctggagtgc-gtggtgccatctctgttcactgcaacctctgcctcttgggttcaagcaattctcctgcctcagcctactgagtagctagaattacaggtgcctatcactgcgcctggctga-tttttgtattt-ttaatagagatggggtttcaccatgttggccagggtcgtctcgaactcctgaccttgtgatccacctgcctcgacctcccaaagtggtgtgattatagctgtgagccattgcgccTCGCTG
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540  99 -  69331447 I
e nomLeu3.chr7b             106638258   0 - 115148730 C

a score=1365.000000
s hg38.chr22_GL383582v2_alt     64060 1 +    162811 T
s panTro4.chr22              40888617 1 +  49737984 T
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431910 1 +  46535552 T
i ponAbe2.chr22             C 0 C 0
s papAnu2.chr10              82426480 1 +  90941950 t
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24687226 1 +  33263144 T
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933695 1 -   2117846 T
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I
e macFas5.chr10              87597897 0 -  96509753 C
e rheMac3.chr10              86941163 16 +  95678458 I
e nomLeu3.chr7b             106638258 0 - 115148730 C

a score=8284.000000
s hg38.chr22_GL383582v2_alt     64061 14 +    162811 TGAttttttttttt
s panTro4.chr22              40888618 14 +  49737984 TGAttttttttttc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431911 14 +  46535552 TGAttttttttttt
i ponAbe2.chr22             C 0 C 0
s macFas5.chr10              87597897  9 -  96509753 -----ACTTACTCA
i macFas5.chr10             C 0 I 3
s papAnu2.chr10              82426481 14 +  90941950 tgATTTCTTACTTA
i papAnu2.chr10             C 0 C 0
s calJac3.chrUn_GL286373      1933696 14 -   2117846 TGATTTCTTACTTA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I
e chlSab2.chr19              24687227  0 +  33263144 C
e rheMac3.chr10              86941163 16 +  95678458 I
e nomLeu3.chr7b             106638258  0 - 115148730 C

a score=-1575.000000
s hg38.chr22_GL383582v2_alt     64075 6 +    162811 -tttttt
s panTro4.chr22              40888632 6 +  49737984 -tttttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431925 5 +  46535552 -ttttt-
i ponAbe2.chr22             C 0 C 0
s macFas5.chr10              87597909 4 -  96509753 --cttt-
i macFas5.chr10             I 3 C 0
s calJac3.chrUn_GL286373      1933710 6 -   2117846 CTTACT-
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I
e chlSab2.chr19              24687227 0 +  33263144 C
e papAnu2.chr10              82426495 0 +  90941950 C
e rheMac3.chr10              86941163 16 +  95678458 I
e nomLeu3.chr7b             106638258 0 - 115148730 C

a score=-241.000000
s hg38.chr22_GL383582v2_alt     64081 17 +    162811 ttttttttttttttttg
s panTro4.chr22              40888638 10 +  49737984 ttttttttt-------g
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431930  1 +  46535552 ----------------g
i ponAbe2.chr22             C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I
e calJac3.chrUn_GL286373      1933716  0 -   2117846 C
e chlSab2.chr19              24687227  0 +  33263144 C
e papAnu2.chr10              82426495  0 +  90941950 C
e macFas5.chr10              87597913  0 -  96509753 C
e rheMac3.chr10              86941163 16 +  95678458 I
e nomLeu3.chr7b             106638258  0 - 115148730 C

a score=207288.000000
s hg38.chr22_GL383582v2_alt     64098 280 +    162811 agacagagtctcgctctgtcgcccagactggagtgtaatggtgtgttctcagctcacttcaagctctgcctcatgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccacctcgcctggctaattggtttgtatctttagtagagac-gggtttcattgtgttagccaggatggtctcgatctcctaacctcatgatccgcccgccttagcctcccaaagggccgggattacaggcgtgagccaccgcgcccggcc
s panTro4.chr22              40888648 280 +  49737984 agacggagtctcgctctgtcgcccagactggagtgtaatggcgtgttctcagctcacttcaagctctgcctcatgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccacctcgcctggctaattggtttgtatttttagtagagac-gggtttcatcgtgttagccaggatggtctcgatctcctaacctcatgatccgcccgccttagcctcccaaagtgccgggattacaggcgtgagccaccgcgcccggcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37431931 281 +  46535552 agacggagtctcgctttgtcgcccagactggagtgtagtggcgtgttctcagctcacttcaagctctgcctcctgggttcctgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccaccaccacgcctggctaattgttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcacgatccgcccgccttggcctcccaaattgctgggattacaggcgtgagccactgcgcccggAC
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86941179 278 +  95678458 agaccatgtctggctctgtcacccaggttggagtgcaatgttacgatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgccccagtctcccgagtagctgggattacaggtgcccgccaccgcacccagctaatt--tttgtatttttagtagagac-aggtttcaccatgttggccaggctggtctccaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggatcacaggtgtgagccaccgtgcccagcc
i rheMac3.chr10             I 16 I 2
s macFas5.chr10              87597913 278 -  96509753 agaccatgtctggctctgtcacccaggttggagtgcaatgttacgatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccagctaatt--tttgtatttttagtagagac-aggtttcaccatgttggccaggctggtctcgaactcctgaccttgtgattcccccgcctcagtctcccaagatgctgggattacaggtgtgagccactgtgcccagcc
i macFas5.chr10             C 0 I 2
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540  99 -  69331447 I
e calJac3.chrUn_GL286373      1933716   0 -   2117846 C
e chlSab2.chr19              24687227   0 +  33263144 C
e papAnu2.chr10              82426495   0 +  90941950 C
e nomLeu3.chr7b             106638258   0 - 115148730 C

a score=8450.000000
s hg38.chr22_GL383582v2_alt     64378 10 +    162811 TGAttt----ctta
s panTro4.chr22              40888928 10 +  49737984 TGAttt----ctta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37432212 14 +  46535552 TGttttcttactta
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86941459 10 +  95678458 TGAttt----gtta
i rheMac3.chr10             I 2 I 4
s macFas5.chr10              87598193 10 -  96509753 TGAttt----gtta
i macFas5.chr10             I 2 I 4
s chlSab2.chr19              24687227 10 +  33263144 TGAttt----ctta
i chlSab2.chr19             C 0 I 4
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I
e calJac3.chrUn_GL286373      1933716  0 -   2117846 C
e papAnu2.chr10              82426495  0 +  90941950 C
e nomLeu3.chr7b             106638258  0 - 115148730 C

a score=3822.000000
s hg38.chr22_GL383582v2_alt     64388 2 +    162811 tt
s panTro4.chr22              40888938 2 +  49737984 tt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37432226 2 +  46535552 tt
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86941473 2 +  95678458 tt
i rheMac3.chr10             I 4 C 0
s macFas5.chr10              87598207 2 -  96509753 tt
i macFas5.chr10             I 4 C 0
s papAnu2.chr10              82426495 2 +  90941950 TT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24687241 2 +  33263144 tt
i chlSab2.chr19             I 4 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I
e calJac3.chrUn_GL286373      1933716 0 -   2117846 C
e nomLeu3.chr7b             106638258 0 - 115148730 C

a score=646938.000000
s hg38.chr22_GL383582v2_alt     64390 291 +    162811 cgtttatttagacattgtctggctgtgtcaccgaggttgcaaggcaatggcacaatctccactcactacaacctctgcctcctaagttcaagcaattctcctgcctcagcctcccaagtagctgggattgcaggcgtgcaccactgtgcccagctcattttttg-tatgtttagtagagaccggtttttgccatgttggccagactcatctggaacccctgacctcaggtgatccgcccaccttggcttccttaagtgctgggattataggcgtgagccaccacgcacagcc
s panTro4.chr22              40888940 291 +  49737984 cgtttatttagacattgtctggctgtgtcaccgaggttgcaaggcaatggcacaatctccactcactacaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccactgtgcccagctcattttttg-tatgtttagtagagacgggtttttgccatgttggccagactcatctggaacccctgacctcaggtgatccgcccaccttggcttccttaagtgctgggattataggcgtgagccaccacgcacagcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37432228 291 +  46535552 catttatttagacattgtctggccgtgtcacccaggttgcagggcaatggcacaatgtccactcactacaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccactgtgcccagctcattttttg-tatgtttagtagagatggggtttcgccatgttggccagacttgtctggaactcctaacctcaggtgatccgcccaccttggcttccttaagtgctgggattataggcgtgagccaccgcgcgcagcc
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86941475 288 +  95678458 catttatttagacattgtgtggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatggaccactgttcccagctaattttttg-tatgtttagtagagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgttgggattacaggtgtgaggcaccacgcgcagcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87598209 288 -  96509753 catttatttagacattgtgtggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtagagacggggtttcgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgttgggattacaggtgtgaggcaccacgcgcagcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82426497 288 +  90941950 CCTTTATTTAGACattgtctggctctgtcacccaggttgcagtgcaatggcacaatctccgctcactacaacctctgcctcctaggttcaagcaatt---ctgccttagcctcccgagtagctgggattaaaggcatgtaccactgtgcccagctaattttttg-tatgtttagtagagacggggttttgccatgttggccagacttgtctggaactcctgacctcaggtgatccatccaccttggcttccctaagtgctgggattacaggtgtgaggcaccacgcgCAGCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24687243 288 +  33263144 catttatttagacattgtctggctctgtcacccaggttgcagtgcaatggcacaatctccactcactacaacctctgcctcctaggttccagcaatt---ctgccttagcctcctgagtagctgggattaaaggcatgtaccactgtgcccaactaattttttg-tatgtttaatagagacggggtttcgccatgttggccagacttgtctggaacccctgacctcaggtgatccatccaccttggcttccctaagtgctgggattacaggtgtgaggcaccacgcgcagcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1933716 290 -   2117846 CAtttatttagatgttgtctggctctgtcacccaggccggagtgcaatggcagaatctctgctcactacaacctccgcttcccaggttcaagcgattctcctgctgcagcctcccaagtagctgagattacagg--tacaccactgagcccagctaattttttgttatgtttagtagagatggggtttcaccatgttggccagatttgtcttgaactcctgacctgaggagatctacccacgtcagcctccgtaagtgctgggattacaggcctgagccaccgtttctggcc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540  99 -  69331447 I
e nomLeu3.chr7b             106638258   0 - 115148730 C

a score=105647.000000
s hg38.chr22_GL383582v2_alt     64681 37 +    162811 TGATTTCCTGATTTAAACGGCACACAGGACCCTGACT
s panTro4.chr22              40889231 37 +  49737984 TGATTTCCTGATTTAAACGGCACACAGGACCCTGACT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37432519 37 +  46535552 GGATTTCCTGATTTAAACGGCACACAGGACCCTGACT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638258 37 - 115148730 TGATTTCCTGATTTAAACGGCACTCAGGACTCTGACT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86941763 37 +  95678458 TGATTTCCTAATTTAAACGGCACATAGGACCCTCACT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87598497 37 -  96509753 TGATTTCCTCATTTAAACGGCACATAGGACCCTCACT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82426785 37 +  90941950 TGATTTCCTGATTTAAACGGCACATAGGACCCTCACT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24687531 37 +  33263144 TGATTTCCTGATTTAAACGGCACATAGGACCCTCACT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934006 37 -   2117846 TTATTTTCTAATTTAAACAGTACTCAGGACCCTGACT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82793340 630 + 104043685 I
e canFam3.chr10              46075540 99 -  69331447 I

a score=851472.000000
s hg38.chr22_GL383582v2_alt     64718 286 +    162811 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGCTCC-TAACATATG--CTGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATCTTTCATGCCATGCATAAATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTTGTCCAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCTCAGG
s panTro4.chr22              40889268 286 +  49737984 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTGCTCC-TAACATATG--CTGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATCTTTCATGCCATGCATAAATGCCCTTCCCCAAGAAGTCCCTGAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCTCAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37432556 287 +  46535552 CGTCTTCCATTCCCAAGGCCTTTCCTTCCGGTGTCAGCAGAGGGGACTTCGTGCTCCATAACATATG--CTGCCCAATGGGCTTGCATGCCCACTGCCAAGTCCGGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGCCT----TTGGAAAATCCCATGTCTCATGCCATGCATAAATGCCTTCCCCCAGTAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCTAGACTGTGGCTCCACCCACCACCCATGTTTGCTGGTGGTGGGGGATCCTCAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638295 287 - 115148730 CGTCTTCCATTCCCAAGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTCTGTGCTCCATAACATATG--TTGCCCAATGGGCTTGCACGCCCACTGCCAAGTCCAGCTCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGACT----TTGGAAAATCCAGTCCTTCATGCCATGTATAAATGCCCTCCCCCAGGAAGTCCCCCAAACCTGCTTCCCCTTCTCAACCTGCCTTATGGTCCAGACTGTGGCTCCAACCACCACTCATGTTTGCTGGTGGTGGGGGATCCTCAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86941800 267 +  95678458 TGTCTTCCGTTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTACTCCATAACATATG--CTGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTCTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAAATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGA--------------------CACGTTTGCTGGTGGTGGAGGATACTTAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87598534 283 -  96509753 TGTCTTCCATTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTACTCCATAACATATG--CTGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAAATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCAC----CACGTTTGCTGGTGGTGGAGGATCCTTAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82426822 283 +  90941950 TGTCTTCCATTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTACTCCATAACATATG--CTGCCCAATGGGATTGCACGCCCATTGCCAAGTccagccccacctccaggccCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGCATAAATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCAC----CATGTTTGCTGCTGGTGGGGGATCCTCAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24687568 283 +  33263144 TGTCTTCCAGTCCCAGGGCCTTTCCTTCTGGTGTCAGCAGAAGGGACTTTGTACTCCATAACATATG--CTGCCCAATGGGATTGCACGCCCATTGCCAAGTCCAGCCCCACCTCCAGGCCCTTGCCCCACTTTTTCTTGGCCT----TTGGAAAATCTCATCTTTCATGCCATGTATAAATGCCCTCCCCCAGGAAGTCCCTCAAATCTGCTTCCCCTTCTCAGCCTGGCTTCTGGTCCAGACTGTGGCTCTACCCAC----CACGTTTGCTGCTGGTGGAGGATCCTCAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934043 285 -   2117846 CCTCTCCCATT-CCAAGGCCCTTCCTTCTGGTGTCAGCAGAGGGGACTTTGTGCTCCAGAATCTATG--CTGCCTGGTGAGCTCGAACACTCACTGCAAAGTCCAGCCCCACCTCCAGGCCCTTGCCCTACTCTTCCTTGGTGT----TTGGAAAATCTAATCCTTCAGGCCGTGTACAAATGCCGTCCCCTAG-AAGTCCCCCAAACCTACTTCCCCTTTGCAGCCTGGCTTCTGATGTAGCCTGCTGCTTCACTCACCACCCACGTTTGCTGTTGGTGGGGGATGCTCAGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46075639 249 -  69331447 CTTCCCCTATTCTCACAACTCTTCCTCCTGAAGGAACCAGAAGGGACCCAG-GTCACGTAATTTAAGGACTGTCCAACCAGCTCTCAAATCCACCGCCAAGGCCACACTCCACTCCAGGCCTTGG------TTCTCTCTGACCTTTGATTGGAAAATCCAATCGGTCCTGC------------------------AGGCTCTGGACATCATCTTCCCAT-----------CTCCTTGTGCAGCCTGAAGCTCCACCCGCCA--CCCGCTGTCTGCTGCTAGGGGGTCCCCAGG
i canFam3.chr10             I 99 I 12
e mm10.chr15                 82793340 630 + 104043685 I

a score=768061.000000
s hg38.chr22_GL383582v2_alt     65004 182 +    162811 ACCTCC-------------------TCCCTCACCTGGTTGAAGGTGT---ATATGTTCTGGAAGTCCACATGCAGCAAGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGCGGGTAGCGTGCAGTCCA-GCGTTGGTGCTGCTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACTGCCAGGGGCACCAGTGCATC
s panTro4.chr22              40889554 180 +  49737984 ACCTCC---------------------CCTCACCTGGTTGAAGGTGT---ATATGTTCTGGAAGTCCACATGCAGCAAGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCTGGCGGGTAGCGTGCAGTCCA-GCGTTGGTGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACTGCCAGGGGCACCAGTGCATC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37432843 204 +  46535552 ACCTCTGCCACCCTCCAGGACCTCCTTCCTCACCTGGTTAAAGTAGTATGATATGTTCTGGAAGTCCACATGCAGCAGGTTGCCCAGCCCGGGCAGTGGCAGGGGGCCCGGTGGGTAGCGTGCAGTCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCAGTGCCAGGGGCACCAGTGCATC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638582 205 - 115148730 ACCTCTGCTGCCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTGGAAGTCCACATGCAGCAGGTTGCCCAGCCCAGGCAGTGGCAGGGGGCCTGGTGGGTAGCGTGCAGTCCATTTGTTGGCACCGGTGCATGAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACTGCCAGGGGCACCAGTGCATC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942067 204 +  95678458 ATGTCTGCCACCCCCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACAGGTTGCCCAGCCCTGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCTACTGTCATGGCCAGGGGCACCAGTGCATC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87598817 204 -  96509753 ATGTCTGCCACCCCCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAGCAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCTACTGTCATGGCCAGGGGCACCAGTGCATC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427105 204 +  90941950 ACCTCTGCCACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAGCAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCATGGCCAGGGGCACCAGTGCATC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24687851 204 +  33263144 ACCTCTGCTACCCTCCAGGACCTCCTCCCTCACCTGGTCGAAGCAGTATGGTGTGTTCTTGAAGTCCACATGCAACAGGTTGCCCAGCCCCGGCAGTGGCAGGGGACCTGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACGGCCAGGGGCACCAGTGCATC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934328 204 -   2117846 ACCTCTACCGCCCTCCAGGACCTCCTCCCTCACCTGGCTGCAGCAGTTTGGTGTATTCTGGAAATCCACATGCAGCAGGTTGCCCAGCCCGGGCAGTGGCATGGGGCCAGGCGGGTAGCGTGCAGCCCA-GCGTTGGCGCCGGTGCATCAGGTCCACCAGGAGCAGGAAGATGGCCACTGTCACAGCCAGGGGCACCAGTGCATC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82793970 185 + 104043685 -------------------ACCACCTCTCTCACCTTGTAAAAGCTGTATGGTATGTTCTCGAAGTCCACCTGCAGCAGGTTTCCCAGCCCAGGGAATGGCACAGGGCCTGGTGGGTAGCAGGCAGTCCA-GCGCTGGCGCCGGTGCACCAGGTCCACCAGAAGCAGGAAGATGGCTGTGAATATGACCACAGCCCATAAGTCATC
i mm10.chr15                I 630 I 9
s canFam3.chr10              46075900 185 -  69331447 -------------------CCCACCTTCCTTACCTGGCTGAAGTAGCAGATTGGTTCCTGGAAGTCCATCTGCAGCAGGTTGCCCACCATGGGCACTGGCGTGGGGCCTGGCGGGTAGCGTGTGGCCCA-GCGCCTGCGCCGGTGCATCAGGTCTACCAGGAGCAGGAAGATGGCCACGGCTACGGCCAGGGGCCCCAGCGTGTC
i canFam3.chr10             I 12 I 9

a score=506662.000000
s hg38.chr22_GL383582v2_alt     65186 151 +    162811 CAGCCCCATGGCTGCCTCACTGCCCATTGGGCTCCTCTGGACACACCTGGCACCTCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACACCCAGTGCATGACCGTTC--------CCTTATAA--AGGGAGCTGATGATGGC----CTTTGCCT
s panTro4.chr22              40889734 151 +  49737984 CAGCCCCATGGCTGCCTCACTGCCCATTGGGCTCCTCTGGACACACCTGGCACCTCCACCCCACCAGGCACAGAG----GACCAGGCAGGACACTCTCAGCACACCCAGTGCATGACCGTTC--------CCTTATAA--AGGGAGCTGATGATGGC----CTTTGCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433047 147 +  46535552 CAGCCCCATGGCTGCCTCACTGCCCACTGGGCTCCTCTGGACACACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACA----CAGCACACCAAGTACATGACCATTC--------CCTTATAA--AGGGAGCTGATGATGGC----CTTTGCCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638787 149 - 115148730 CAGCCCCATGGCTGCCTCACTGCCCACTGGGCTCCTCTGGACACACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAGGCAGGACA--CTCAGCACACCGAGTGCATGACCGTTC--------CCTTATAA--AGGCAGCTGATGATGGC----CTTTGCCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942271 151 +  95678458 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACACACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACATGAAGTGCATGATCATTC--------CCTTATAA--AGGAAACTGATCATGGC----CTTTGCCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599021 151 -  96509753 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACACACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACATGAAGTGCATGATCATTC--------CCTTATAA--AGGAAACTGATCATGGC----CTTTGCCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427309 151 +  90941950 CAACCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACACACCTGGCTCCTCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACATGAAGTGCATGATCATTC--------CCTTATAA--AGGAAACTGATCATGGC----CTTTGCCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688055 151 +  33263144 CAGCCCCATGACTGCCTTGCTGCCCACTGGGCTCCTCTAGACACACCTGGCTCCCCCACCCCACCAGCCACAGAG----GACCAGGCAGGACACTCTCAGCACATGAAGTGCATGATCATTC--------CCTTATAA--AGGAAACTGATCATGGC----CTTTGCCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934532 151 -   2117846 CAGTCCCATGGCTGCCTTGCTGCCCACTGAACTCCTCTGGACACACCTGGCACCCCCACCCCACCAGGCACAGAG----GACCAAGCAGGATACTCTCAGCATACCGAGTGTGTGACTGTTC--------CCTTATAA--AGGGAGCTGATGATGGC----CTTTGCCC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82794164 142 + 104043685 CAGCCCCATGGCTGCCCTACTGCTT-CCAGGCTTTTGAAGGAATACTCGTT------------CCAGAAACTTAG----AATCAGGAAAGATCCTCTTAT--GATGGACTGGGAACCTGGTC--------CCTTATAAAGAGGGAGGAGGGGAAGGCTGCACTTTGTTC
i mm10.chr15                I 9 C 0
s canFam3.chr10              46076094 162 -  69331447 CAGCCCCATAGCTGTCTCAGTGCCCGCTGGGCTCGTG-GGGCACGCCGGTGTCCCTCACCACACCAGGGACCTGGGGCTGGCCAGCCAGGGTGCTCTCCCCGCACTGTCCGCTCAACCGGCCTGGCCTCACTTTCTAA--AGGGAGCTGAGACCGGC----CTTTGCCC
i canFam3.chr10             I 9 C 0

a score=27261.000000
s hg38.chr22_GL383582v2_alt     65337 7 +    162811 TCTGCTG
s panTro4.chr22              40889885 7 +  49737984 TCTGCTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433194 7 +  46535552 TCTGCTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638936 7 - 115148730 TCTGCTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942422 7 +  95678458 TCTGCTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599172 7 -  96509753 TCTGCTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427460 7 +  90941950 TCTGCTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688206 7 +  33263144 TCTGCTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934683 7 -   2117846 TCTGCTG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82794306 7 + 104043685 TCTGCCT
i mm10.chr15                C 0 C 0
e canFam3.chr10              46076256 0 -  69331447 C

a score=204035.000000
s hg38.chr22_GL383582v2_alt     65344 56 +    162811 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTCAGGCCAGGGC-
s panTro4.chr22              40889892 56 +  49737984 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTCAGGCCAGGGC-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433201 56 +  46535552 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTCAGGCCAGGGC-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638943 56 - 115148730 TGAGCCAACCTACTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTCAGGCCAGGGC-
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942429 56 +  95678458 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTTAGGCCAGGGT-
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599179 56 -  96509753 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTTAGGCCAGGGT-
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427467 56 +  90941950 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTTAGGCCAGGGT-
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688213 56 +  33263144 TGAGCCAACCTGCTGTGTTGAC---TGTGCTGCCAG--------TGGGTGCAGGGTCAGGCCAGGGT-
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934690 56 -   2117846 TGAGCCAAACTGCTGTGTTAAC---TGTGCTGCCAG--------TGGGTAGAGGGTCAGGCTAGGGC-
i calJac3.chrUn_GL286373    C 0 T 17713
s mm10.chr15                 82794313 66 + 104043685 TGAGCCAAGTAGCTGTGTTAATTAATGTTCAAACAGAGCCTATATGGGGGAAGGGG-GTGTCAGAAA-
i mm10.chr15                C 0 I 5
s canFam3.chr10              46076256 57 -  69331447 TGAGTCAATATGTCAGGGCGAC---AGTGCTGCCAG--------AGGGTGCAGGGAGGGGTCAGGTGC
i canFam3.chr10             C 0 C 0

a score=185208.000000
s hg38.chr22_GL383582v2_alt     65400 67 +    162811 ------------GGGTATGGGCTGCTGCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGATTAGGGTGGTG---
s panTro4.chr22              40889948 67 +  49737984 ------------GGGTATGGGCTGCTGCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGATTAGGGTGGTG---
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433257 67 +  46535552 ------------AGGTATGGGCTGCTCCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGGTTAGGGTGGTG---
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106638999 67 - 115148730 ------------GGGTAAGGGCTGCTCCAGAGGTCCT-TGCCC---CTGCTCGCTCTAGTTGCCTACCCAGGTTAGGGTGGTG---
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942485 70 +  95678458 ------------GGGTAGGAGCTGCTCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGTGATG---
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599235 70 -  96509753 ------------GGGTAGGGGCTGCTCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGTGATG---
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427523 70 +  90941950 ------------GGGTAGGGGCTGCTCCAGAGGTCCT-TGACCCTGCTGCTTGCTCTTGGTGCCTACCCAGGTTAGGGTGATG---
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688269 70 +  33263144 ------------GGGTAGGGGCTGCTCCAGAGGTCCT-TGACCCTGCTGCTTGCTCGTGGTGCCTACCCAGGTTAGGGTAATG---
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1917033 57 -   2117846 ------------AGGTAGGGGCCGCACCAAAGGTCCT-TGTCC---CAGC----------TGTTTACCCAGGGTAGGGTGGTG---
i calJac3.chrUn_GL286373    T 17713 I 17656
s mm10.chr15                 82794384 58 + 104043685 ------------AGGGAAAGTCAACATCAGAGGTTCC-TGCCCTTTCTTCTTTCCTGTGGTGCTTATCCAG---------------
i mm10.chr15                I 5 C 0
s canFam3.chr10              46076313 84 -  69331447 AGGGGAGTTCAGGTGCAGGGGTGACCACAGGAGTCCTGTGCCC--GCTGCACTCTCCGGGTGTTTACCCACAGTAGTGGGGTCAGG
i canFam3.chr10             C 0 C 0

a score=36889.000000
s hg38.chr22_GL383582v2_alt     65467 13 +    162811 GGCGAGAGGTGGC
s panTro4.chr22              40890015 13 +  49737984 GGCGAGAGGTGGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433324 13 +  46535552 GGTGAGAGGTGGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106639066 13 - 115148730 GGTGAGAGGTGGC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942555 13 +  95678458 GGTGAGAAGTGAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599305 13 -  96509753 GGTGAGAAGTGAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427593 13 +  90941950 GGTGAGAAGTGAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688339 13 +  33263144 GGTGAGAAGTGAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934746 13 -   2117846 AGTGAGAGGCAGC
i calJac3.chrUn_GL286373    I 17656 C 0
s mm10.chr15                 82794442  5 + 104043685 ---GGGAG-----
i mm10.chr15                C 0 C 0
s canFam3.chr10              46076397 13 -  69331447 GGCGGGGAGAGGC
i canFam3.chr10             C 0 I 2001

a score=996337.000000
s hg38.chr22_GL383582v2_alt     65480 337 +    162811 CTGGCAT-GGGAGCTCCACCCAAGTTGGAGGTATGGATTGTACTGGGTGCTGGGCTGTGTACTGG-----GAGCATGGTGGTAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCACGGGGAGTAGGAAGGTAACATAGCTGACATGACAAGCCAGCAGTGCCATGAGGGTCCATGGGGACGTTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTGTAGGCCACGGCACTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
s panTro4.chr22              40890028 337 +  49737984 CTGGCAT-GGGAGCTCCACCCAAGTTGGAGGTATGGATTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGGTAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCACGGGGAGTAGGAAGGTAACATAGCTGATATGACAAGCCAGGAGTGCCATGAGGGTCCATGGGGACGTTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTGTAGGCCACGGCACTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433337 336 +  46535552 CTGGCAC-GAGAGCTCCACCCAAGTTGGAGGTATGGATTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGGGAAGGCTGTGAGT----CAATGCCCCAATGTAATGACGACGAGGAGGAGCAGGAAGGTAACATAGCTGACATGACAAGCCAGCAGTGCCATGAGGGT-CATGGGGACGTTGCCCCAGGCTGGAACAGGACTTTCTGTGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTGCAGGCCACGGCACTGGCAGTGGGACCAACCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106639079 341 - 115148730 CTGGCGT-GAGAGCTCCACCCAAGCTGGAGGTATGGGTTGTACTGGGTACTGAGCTGTGTACTGGGTGCTGAGCATGGTGGGAAGGCTGTGAGT----CAATGCCCCAACGTAATGATGACCATGAGGAGAAGGAAGGTAACATAGCTGACATGACAAGCCAGCAGTGCCATGAAGGT-CATGGGGACATTGTCCCAGGCTGGAACAGGACTTTCTGGGAAGGATTCAT---GGAGAATTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTATAGGCCATGGCACTGGCAGTGGGACCAACCTACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGTAGCAGGAGAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942568 338 +  95678458 CTGGCAT---GAGCTCCACCCAAGCTGGCGATATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGGAAGGCTGTGAGTGGACCAATGCCCCACTGTAATCACGACCTTGAGGAGCAGGAAGGTAACATAGCTGACATGAGAAGCCAGCGGTACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTGTAGGCCACAGCACTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCCGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599318 338 -  96509753 CTGGCAT---GAGCTCCACCCAAGCTGGCGATATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGAAAGGCTGTGAGTGGACCAATGCCCCACTGTAATCACGACCTTGAGGAGCAGGAAGGTAACATAGCTGACATGAGAAGCCAGCGGTACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTGTAGGCCACAGCACTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427606 338 +  90941950 CTGGCAT---GAGCTCCACCCAAGCTGGCGATATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGCGGGAAGGCTGTGAGTGGACCAATGCCCCACCGTAATCACGACCTTGAGGAGCAGGAAGGTAACATAGCTGACATGAGAAGCCAGCGGTACCATGAGGGT-CATGGGGACTCCGCCCCAGGCTGGAACAGGACTTTCTGGGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACTGTAGGCCACAGCACTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688352 340 +  33263144 CTGGCAT-GAGAGCTCCACCCAAGCTGGCGATATGGGTTGTACTGGGTGCTGAGCTGTGTACTGG-----GAGCATGGTGGGAAGGCTGTGAGTGGACCAATGCCCCACCGTAATCATGACCTTGAGGAGCAGGAAGGTAACATAGCTGACATGAGAAGCCAGCGGTACCATGAGGGT-CATGGGGACTCTGCCCCAGGCTGGAACAGGACTTTCTGTGAAGGATTCAT---GGAGAACTTTGTCTAGC--TGACTGAGGGG-CTGCCTAGCACCGTAGGCCACAGCACTGGCAGTGGGAAAAAGCCACCCCTGGAATTTCCTGTGCAGGTGGC--CTGAGGGGCAGCAGGAGGC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1934759 345 -   2117846 CTGGCAT-GAGGGCTCCACCCAGGCTGGAGGTATGGGTTGTACTGGATCCTGAGCTGTGTCCTGA-----GAACATGGTGGGAAGGTAGCCAGTGGGCCAGTACCCCAGCATACTCAAGACCATCAGAAGTAGGAAGGTAACATAGCTGACATGCCAAGCCAGCAGTGCCATGAGGGT-CATGGGGACATTGCCCCAGGCTGGAACAGAACTATCTGGGAAGGATTTCTGGAGGAGAACTTTGAGTGGCAGAGACTGAGGGG-CTGCCTAGCACTGTAGGCCATGGTACTGGCAGTGGGACCAATGCACCCTTGGAATTTCTTGTGCAGGTGGC--CTGAGGGGCCACAGGAGGC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82794447 308 + 104043685 -TGGCACTGATAGCTCCACAGAGAATTGC-ATAGTGGTTATATTGGGT-------TGGACACTGT-----AAGCACAGCGGGCACGTAGCCA-TGGA-CCCTGCCTCA-------------------GGGTGCAACGGTCATAGA-CTAATTTGCCACATGACCAGAGATCCGAGGGG-ACCGAAGACATTGTCTCAGAATGGAACAAGGCCTTTTGG--AGGCTTCAG---GGAACAC-TTGGCTAGT--AGGATATGAGGTCTGACTGACACTATCAGT--GGGCACTATCACTATGCAGCAATGGCCACTGAAGTGGCTTATGTGGCTAGCAGATGAGGGTGAGGGAGAGGC
i mm10.chr15                C 0 I 12113
e canFam3.chr10              46076410 2001 -  69331447 I

a score=1939725.000000
s hg38.chr22_GL383582v2_alt     65817 724 +    162811  
s panTro4.chr22              40890365 724 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37433673 728 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106639420 717 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86942906 714 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87599656 714 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82427944 710 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24688692 697 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1935104 744 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82794755 12113 + 104043685 I
e canFam3.chr10              46076410 2001 -  69331447 I

a score=471795.000000
s hg38.chr22_GL383582v2_alt     66541 144 +    162811 TACCAGCCAGAGGCCTGTAATTCAAGATATGGCAG-CATGAGGAAAACATTTAATAACAATGCCTGTGGCC-TTTTCCAATCATTGTGCACCTGTGgcttccattgatcgggcacttatgtgccagaaactgctggtcagactgtg
s panTro4.chr22              40891089 144 +  49737984 TACCAGCCAGAGGCCTGTAATACAAGATATGGCAG-CATGAGGAAAACATTCAATAACAATGCCTGTGGCC-TCTTCCAATCATCGTGCACCTGTGgctcccactgatcgggcacttatgtgccagaaactgctggtcagactgtg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37434401 144 +  46535552 TACCAGCCAGAGGCCTGTAATTCAAGATATGGCAG-CATGAGGAAAACCTTCAATAACGATGCCTGTGGCC-TTTTCCAATCATTGTGCACCTGTGGCTTCcattgatcgggcacttatgtgccagaaactgctggtcagactgtg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106640137 143 - 115148730 TACCAGCCAGAGGCCTGTAATTCAAGATAC-GCAG-CATGAGGAAAACTTTCAATAACGATGCCTGTGGCC-TTTTCCAATCATTGTGCACCTGTGGCTTCcattgattgggcacttatgtgccagaaactgctggtcagactctg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86943620 145 +  95678458 TACCAGCCAGAGGCCTGTAATTCAAGATACAGCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCCTTTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgtg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87600370 144 -  96509753 TACCAGCCAGAGGCCTGTAATTCAAGATACAGCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCC-TTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgtg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82428654 144 +  90941950 TACCAGCCAGAGGCCTGTAATTCAAGATACAGCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCC-TTTTCCAATCATTGTGCACCTGTGGCTTCCATTGATAGGGCACTTATGTGCCAGAAACTGCTGGTCAGACTATG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24689389 144 +  33263144 TACCAGCCAGAGGCCTGTAATTCAAGATACAGCAG-CATGAGGAAAACCTTCGATAATGATGCCTATGGCC-TTTTCCAATCATTGTGCACCTGTGgcttccattgatagggcacttatgtgccagaaactgctggtcagactgta
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1935848 144 -   2117846 TACCTGCCAGAGGCCTGTAATTCAAGATATGGCAG-CATGAGGAAAACCTTCAATAGTGATGCCTATGGCC-TTTTCCAGTCACTGTGCACCTGTGgcttccattgatcaggcacttatatgccagaagctgctagtcagactgtg
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46078411 130 -  69331447 TGCCTACCCGGGGCC-------CAGGATGCGGCAGCCACAGGGCAAACAAGCCGTCACGAGGCCTGTGGAT-TTTTGCCATCATTGTGCAATTGCAGCTTCAA------GGTCCCCGATGTGCCGCGAAGGGTC--TCAGGCCGTG
i canFam3.chr10             I 2001 I 341
e mm10.chr15                 82794755 12113 + 104043685 I

a score=1467446.000000
s hg38.chr22_GL383582v2_alt     66685 521 +    162811  
s panTro4.chr22              40891233 523 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37434545 524 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106640280 519 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86943765 518 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87600514 518 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82428798 518 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24689533 518 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1935992 527 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82794755 12113 + 104043685 I
e canFam3.chr10              46078541 341 -  69331447 I

a score=275719.000000
s hg38.chr22_GL383582v2_alt     67206 77 +    162811 TCTTGCCCTTCCCCCTGCC--AGGCATAGCAATGCTACTGGGAGAGACCCTCCAATTCCCAGCTCCTCCCATGGGATGG
s panTro4.chr22              40891756 77 +  49737984 tcttgcccttccccctgcc--aggcacagcaatgctactgggagagaccctccaattcccagctcctcccatgggaCGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37435069 77 +  46535552 TCTTGCCCTTCCCCCTGAC--AGGCACAGCAATGCTACTGGGAGAGACCCTCCAATTCCCAGCTCCTCCAATGGGACAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106640799 77 - 115148730 tcttgcccttccccctgcc--aggcacagcaatgctactgggagggaccctccaattcccagctcctcccatgggaCAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86944283 77 +  95678458 tcttgcccttccccctgcc--aggcacagcaatgccactgggagggaccctccaattcccagcctctcccatgggaCAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87601032 77 -  96509753 tcttgcccttccccctgcc--AGGCACAGCAATGCCACTGGGAGGGACCCTCCAATTCCCAGCTCCTCCCATGGGACAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82429316 77 +  90941950 TCTTGCCCTTCCCCCTGCC--AGGCACAGCAATGCCACTGGGAGGGACCCTCCAATTCCCAGCTCCTCCCATGGGACAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24690051 77 +  33263144 tcttgcccttccccctgcc--AGGCACAGCAATGCCACTGGGAGGGACCCTCCAATTCCCAGCTCCTCCCATGGGACAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1936519 77 -   2117846 ttttgcccttccccctgcc--aggcacagcaatgccattgggagggaccctcCAATTCCCAGCTCTTCCGATAGGACAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46078882 76 -  69331447 TCCTGCCCCTCCCCCTCCCGGAGGCACAGCA--GCCCGTGGAGGAAGCCCCCCAATTCCCC-CTCCTTCCCGGGAACAG
i canFam3.chr10             I 341 I 418
e mm10.chr15                 82794755 12113 + 104043685 I

a score=1202467.000000
s hg38.chr22_GL383582v2_alt     67283 434 +    162811 GTTTCT----GCTGGGTCCGACTCA----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAGAGCAGCA---CCTCTGCGTTTCCACAGCTGCAAGGGGACGGGGTTATGGGCAGTGGAATagttgtgtctgggtatcctggaggggattggtgccaggacccccggtaaataccaaaacccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcaaatgctcctgtatactttaaatcatctctagattatttgtaatgcctaatacagtgtaaatgctacataaatagttgctatactgtactgctCTTATTTGTATTTTTAGTTGTTATAC-------TTTCTCAAGTTATCTTTGATGTGTGGTTGAATTT------GTGGATGCGGAGCCTGTGGGTATCGAGGGCTGCTTGTACCCtagaaacagaaatggaaagctc
s panTro4.chr22              40891833 434 +  49737984 GTTTCT----GCTGGGTCCGACTCA----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAGAGCAGCA---CCTCTGAGTTTCCACAGCTGCAAGGGGACGGGGTTATGGGCAGTGGAATagttgtgtctgggtatcctggaggggattggtgccaggacccccagtaaataccaaaatccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcaaatgctcctgtatactttaaatcatctctagattatttataatgcctaatacagtgtaaatgctacataaatagttgctatactgtactgctcttatttgtatttttagttgttatac-------tttctcaagttatctttgatgtgtggttgaattt------gtggatgcggagcccgtgggtatcgagggctgcttgTACCCtagaaacagaaatggaaagctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37435146 432 +  46535552 GTTTCT----GCTGGGTCCGACTC-----AGAGTGCTGAGTGGTGGGGTCTGCCTGCCCTCAG---AGCA---CCTCTGCGTTTCCACAGCTGCAAGGGGATGGGGTTATGGGCAATGGAATagttgtctctgggtatcctggaggggattggtgccaggacccccagtaaataccgaaatccaaggatgcttaggttccttatgtaaaatggcatagtatacctatgcatatgctcctgtatactttaaatcatctctagattatttataatacctaatacagtataaatgctatataaatagttgctatactgtactgctcttatttgtattttta---gttatac-------tttttcaag-tatcttcgatgtgtggttgaatttgtggaagtggatgtggagcctacgggtatcgagggctgcttgTACCCTAGAAACAGAAATGGAAAGCTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106640876 428 - 115148730 GTTTCT----GCTGGGTCCGACTC-----AGAGTGCTGAGTGGTGGGGTCTGTCTGCCCTCAGAGCAGCA---CCTCTGCGTTTCCACAGCTGCAAGGGGATAGAGTTATGGGCAGTGGAATagttgtctctgggtatcctggaggggattggtgccaggacccccggtaaataccgaaatccaaggatgctcaggttccttatgtaaaatggcatagtatacctatgcatatgctcctgtatactttaaatcatctctag----tttataatacctaatacagtgtaaatgctacataagtagtggctatactgtactgctCTTATTTGTATTTTTAGTTGTTATAC-------TTTTTCAAG-TATCTTCAATGTGTGGTTGAATTT------GTGGATGTGGAGCCTGTGGGTATCGAGGGTTGCTAGTACCCTAGAAACAGAAAAGGAAAGCTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86944360 439 +  95678458 GTTTCTGTTGGTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGGGT----CTGCCCTCAGAGCAGCA---CCTCTGAGTTTCCACAGCTGCAAGAGGGTGGGATTATGGGCAGTGGAATagttatctctgggtatcctggaggggattggtgcctggatccccggtaaatactgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcatatgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactacgtaaatagttgctatactgtactgctcttatttgtatttttagttgttatgcttt----ttttccaag-tatcttcgatgtgtggctgagttt------gtggatgtggagcctgtgggtactgagggctgcctgTACCCtagaaacagagatggaaag-tc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87601109 435 -  96509753 GTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGGGT----CTGCCCTCAGAGCAGCA---CCTCTGAGTTTCCACAGCTGCAAGAGGGTGGGATTATgggcagtggaatagttatctctgggtatcctggaggggattggtgcctggatccccggtaaatactgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcatatgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactacgtaaatagttgctatactgtactgctcttatttgtatttttagttgttatgcttt----ttttccaag-tatcttcgatgtgtggctgagttt------gtggatgtggagcctgtgggtactgagggctgcctgtaccctagaaacagagatggaaag-tc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82429393 437 +  90941950 GTTTCT----GTTGGGTCTGACTCATCCCCGAGTGCTGAGTGGCAGGGT----CTGCCCTCAGAGCAGCA---CCTCTGAGTTTCCACAGCTGCAAGGGGGTGGGATTATGGGCAGTGGAATAGTTATCTCTGGGTATCCTGGAGGGGATTGGTGCCTGGATCCCCGGTAAATACCGaaatccaaggatgctcaagttccttatgTAAAATTGCATAGTATACCTATGTATAtgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaataCTACGTAAATAGTTGCTATACTGTACTgctcttatttgtatttttagttgttatactttt--cttttccaaG-TATCTTCGATGTGTGGCTGAGTTT------GTGGATGTGGAGCCTGTGGGTACTGAGGGCTGCCTGTACCCTAGAAACAGAGATGGAAAG-TC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24690128 436 +  33263144 GTTTCT----GTTGGGTCTGACTCGTCCCCGAGTGCTGAGTGGCAGGGT----CTGCCCTCAGAGCAGCA---CCTCTGAGTTTCCACAGCTGCAAGGGGGTGGGATTATgggcagtggaatagttatctctgggtatcctggaggggactggtgcctggatccccggtaaataccgaaatccaaggatgctcaagttccttatgtaaaattgcatagtatacctatgcatatgctcctgtatactttaaatcatctctagattatttataatacctaatacagtgtaaatactatgtaaatagttgctatattgtactgctcttatttgtatttttagttgttatactttt---ttttagaag-tatcttcgatgtgtggctgagttt------gtggatgtggagcctgtgggtactgagggctgcctgtaccctagaaacagagatggaaag-tc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1936596 428 -   2117846 GTTTCT----ATTGGGTCTGACTCA----AGAGTGCTGAGTGGCAGAGC----CTGTCCTCAGAGCAGCAGGGCACCTGCATTTCCACAGGTACAAGGTGGTGGGACTGCAGGCAATGGAATagttgtctctgggtatcctggagaggactggtgccag--------gtaaataccaaaatccaaggacgctcaggttccttatgtaaaatggcagagtatacctatgcatatcctcccgtatactttaaatcatctctag---atttataatacctaatacaatataaatgctgtgtaaatagttgctatcccgtactgctcttatttgtatttttagttgttatactttttttttttccaaaatatcttctatgtgtggttgaattt------gtagacatggagcctgt-ggtattgagggctgcctgTACTCTACGAACAGAAATGAAGGggtc
i calJac3.chrUn_GL286373    C 0 I 1864
e mm10.chr15                 82794755 12113 + 104043685 I
e canFam3.chr10              46078958 418 -  69331447 I

a score=542296.000000
s hg38.chr22_GL383582v2_alt     67717 241 +    162811 caggggcagggccagcctgcaggggggcagtttaatgggtaaagcttccgttttataaaatgaaaaa-ttctggagattggttgcacaacaatctgaacacattt---cccactaaactgtactgtgactgttatgatggtacatttttttaaccacaatttaaaaaCTTTATGAG-Tattaaaaaaataaatggctatatacacacctattagaatggcttaaatccagaacactgacaacacca
s panTro4.chr22              40892267 241 +  49737984 caggggcagggccagcctgcatgggggcagtttaatgggtaaagcttcagttttataaaatgaaaaa-ttctggagattggttgcacaacaatctgaacacattt---cccactaaactgtactgtgactgttatgatggtacatttttttaaccacaatttaaaaaCTTTATAAG-TATTAAAAAAATAAATGGCTATAtacacacctattagaatggcttaaatccagaacactgacaacacca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37435578 241 +  46535552 CAGGGGCAGGGCCAGCCTGCAGGGGGGCAgtttaatgggtaaagcttcagttttataaaatgaaaaagttctggagattggttgcacaacaatgtgaacacatttaccaccactaaactgtactgtgactgttatgatggtaaatttttttaatcacaatttaaaaaCT---TAAG-Tatt-aaaaaataaatggctatatacacacctattagaatggcttaaatccagaacactgacaacacca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106641304 245 - 115148730 CAGCGGCAGGGCCGGCTTGCAGGGGGGCAgtttaatgggtaaagcttcagttttataaaatgaaaaagttctggagattggttgcacaacaatgtgaacacatttaccaccactaaactgtactgtgactgttatgatggtacatttttttaaccacaatttaaaaaCTTTTTAAG-Tattaaaagaataaatggctatatacacacctattagaatggcttaaatccagaacactgacaccacca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86944799 246 +  95678458 caggggcaggatgggcctgcaggggggcagtttaatgggtaaagtttcagtttcataaaatgaaaaagttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccataactgttatgatggtaaatttttttagccacaatttaaaaaCTTTTAAAGTTATTCAAAAAATAAATGGccacatacacacctgttagaatggcttaaatccagaacactgacaccacca
i rheMac3.chr10             C 0 I 21
s macFas5.chr10              87601544 246 -  96509753 caggggcaggatgggcctgcaggggggcagtttaatgggtaaagtttcagtttcataaaatgaaaaagttctgaagattggttgcacaacaatgtgaacacacttaacaccactaaactgtaccataactgttatgatggtaaatttttttagccacaatttaaaaaCTTTTAAAGTTATTCAaaaaataaatggccacatacacacctgttagaatggcttaaatccagaacactgacaccacca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82429830 246 +  90941950 CAGGGGCAGGATGGGCCTGCAGGGGGGCAGTTTAATGGGTAAAGTTTcagtttcataaaatgaaaaagttctgaacattggttgcacaacaatgtgaacacACTTAACACCACTAAACTGTACCATAACTGTTATGATGGTAAAtttttttAGccacaatttaaaaacttttaaagttattcaaaaaataaatggccacatacacacctgttagaatggcttaaatccagaacactgacaccacca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24690564 240 +  33263144 caggggcaggatgggcctgcaggggggcagtttaatgggtaaagtttgagtttcataaaatgaaaaagttctgaagattggctgcacaacaatgtgaacacacttaccaccactaaactgtaccataactattatgatggtaaatttttttagccacaatttaaaaaCTT------TTATTCAaaaaataaatggccacatacacacctgttggaatggcttaaatccagaacactgacaccacca
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82794755 12113 + 104043685 I
e canFam3.chr10              46078958 418 -  69331447 I
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=63492.000000
s hg38.chr22_GL383582v2_alt     67958 36 +    162811 aatgctggcaaggatgtggagcatcaggaactc--att
s panTro4.chr22              40892508 38 +  49737984 aatgctggcaaggatgtggagcatcaggaactctcatt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37435819 38 +  46535552 aatgctgacaaggatgtggagcatcaggaactctcatt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106641549 38 - 115148730 aatgctggcaaggatgtggagcatcaggaactctcatt
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87601790 38 -  96509753 aatgctggcaaggatgtggaccatcaggaactctcatt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82430076 36 +  90941950 catgctggcaaggatgtggaccATCAGgaa--ctcatt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24690804 38 +  33263144 aatgctggcaaggatgtggaccatcaggaactctcatt
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82794755 12113 + 104043685 I
e canFam3.chr10              46078958 418 -  69331447 I
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I
e rheMac3.chr10              86945045 21 +  95678458 I

a score=718422.000000
s hg38.chr22_GL383582v2_alt     67994 328 +    162811 cattgctggtgggagtacaaaatggtacagacactttggaagaaagtttggcaatttcttttccttttctca--------------gttttttttttttttttt-tttttgagacagag----tctcactcactctgtcacccaggctaggagtgcagtggcacgatgatctcagctcactggaacctttgcctcctgcgttcaagcaatcctcccacctcagcctcccgtttagctgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc
s panTro4.chr22              40892546 323 +  49737984 cattgctggtgggagtacaaaatggtacagacactttggaagaaagtttggcaatttcttttccttttttca--------------attttttttttttttttt------gagacagag----tctcactcactctgtcacccaggctaggagtgcagtggcacgatgatctcagctcactggaacctttgcctcctgcgttcaagcaatcctcccacctcagcctcccgtttagctgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37435857 318 +  46535552 cattgctggtgggagtacaaaatggtacagacactttggaagacagtttggcaacttcttttccttttttca--------------attttttttt--------------gagacagagtctctctcactcactctgtcacccaggct-ggagtgcagtgacatgatgatctcagctcactggaacctttgcctcctgagttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcgtgagccaccatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcagactcctgacctcaggtgatcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106641587 329 - 115148730 cattgctggtgggagtataaaacggtacagacactttggaagacagtttggcaatttcttttccttttttca--------------atttttttttttttttttttttttgagacagag----tctccctcactctgtcacccaggctaggagcgcagtggcacgatgatctcagctcactggcacctttgcctcctgggttcaagcaatcctcccacctcagcctcccgagtagctgagactacaggcgtgagccatcatgcctggctgatttttgtatttttagtagagacagggtttcaccatgttggccagactggtctcaaactcctgacctcaggtgatcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86945066 334 +  95678458 cattgctggtgggagtacaaaatggtacagatactttggaagacagtttggcaatttcttttccattcttcaatttttttttttttattttttttttttttttt---tttttttttgag----tctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accatgtccagctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc
i rheMac3.chr10             I 21 C 0
s macFas5.chr10              87601828 320 -  96509753 cattgctggtgggagtacaaaatggtacagatactttggaagacagtttggcaatttcttttccattcttca--------------attttttttttttttttt---tttttttttgag----tctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accatgtccggctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82430112 315 +  90941950 cattgctggtgggagtacaAAATGGTACAgatactttggaagacagtttggcaatttcttttccattcttca--------------a-----tttttttttttt---tttgagacggag----tctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcatga---accatgtccggctgatttttgtacttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24690842 318 +  33263144 cattgctggtgggagtacaaaatggtacggacactttggaagacagtttggcaatttcttttccattcttca--------------a-----tttttttttttt---tttgagacggag----tctcagtcactctgttacccaggctaggagtgcagtggt---gtgatctcagctcactggaacctctgccttctaggttcaagcaatcctcccacctcagcctcccgagtagctgggactgcaggcgtgaaccaccatgtccggctgatttgtgtatttttagtagagacagggtttcaccatgttggccgggctggtctcaaactcctgacctcaggtgatcc
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82794755 12113 + 104043685 I
e canFam3.chr10              46078958 418 -  69331447 I
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=180906.000000
s hg38.chr22_GL383582v2_alt     68322 70 +    162811 agacagtttggcaatttcttacaaaactagacatactcttaccatacaatccaccaatcgtgcttcctgt
s panTro4.chr22              40892869 70 +  49737984 agacagtttggcaatttcttacaaaactagacttactcttaccatacaatccaccaatcgtgcttcctgt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436175 70 +  46535552 agacagtttgacaatttcttacagaactagacatactcttaccatacaatccaccaattgtgcttcctgt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106641916 70 - 115148730 agacagtttggcaatttcttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86945400 70 +  95678458 agacagtttggcaattttttacaaaactagacatactcttaccattcaatccaccaactgtgcttcctgt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602148 70 -  96509753 agacagtttggcaattttttacaaaactagacatactcttaccattcaatccaccaactgtgcttcctgt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82430427 70 +  90941950 agacagtttggcaattttttaCAAAACTAgacatactcttaccatacaatccaccaactgtgcttcctgt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691160 70 +  33263144 agacagtttggcaattttttacaaaactagacatactcttaccatacaatccaccaactgtgcttcctgt
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82806868 54 + 104043685 aggaagtttagcagttgcttataca-----acatttctttaccatatgacacactgatc-----------
i mm10.chr15                I 12113 C 0
e canFam3.chr10              46078958 418 -  69331447 I
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=920727.000000
s hg38.chr22_GL383582v2_alt     68392 348 +    162811 acttacccaaaggagttgaggccttatgtccacacaaaaacctgcaaagggatgtttacagcagcttcatttgtaattgtcaaaacttgaaagcaaccaagatgttcttcag----cagttgaatggataaactgtggtacagccagacaatggaattatttatcact--------aaaaagaaacaagctatcaagtcatgaaaagacacgggtgaaccttaaatgcacattactaag-tgaatgaagccaatctaaaaaaggctacctactatctaatctcaactatatgatactttggaaaaggcaaaactttgcagacagtaaaaggctcagcg---gtgagggactggggctaaggagg
s panTro4.chr22              40892939 348 +  49737984 acttacccaaaggagttgagaccttatgtccacacaaaaacctgcaaagggatgtttacagcagcttcatctgtaattgtcaaaacttgaaagcaaccaagacgttcttcag----caggtgaatggataaactgtggtacagccagacaatggaattatttatcact--------aaaaagaaacaagctatcaagtcatgaaaagacacggttgaaccttaaatgcacattactaag-tgaatgaggccaatctaaaaaaggctacctactatctaatctcaactatatgatactttggaaaaggcaaaactttggagacagtaaaaggctcagtg---gtgagggactggggctaaggagg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436245 348 +  46535552 acttacccaaaggtgttgagaccttacgtccactcaaaaacctgcaaagggatgtttacggcagctttatctgtaattgtcaaaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagccagacaatggaattatttatcact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tgaatgaagccaatctaaaaaaggctacctactatataatctcaactatatgatactttggaaaaggcaaaactttggagacagtaaaaggctcagtg---gtgagggactgggggtaagaagg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106641986 348 - 115148730 acttacccaaaggagttgagaccttatgtccacacaaaaacctgcaaagggatgtttacagcagctttatctgtaattgtcaaaacttgaaagcaaccacgatgttcttcag----caggtgaatggataaactgtggtagagtcagacaatggaattatttatcact--------aaaaagaaacaagccatcaagtcatgaaaagacatggttgaaccttaaatgcacattaccaag-tgaatgaagccaatctaaaaagggttatctactatctaatctcaactatatgacacttcggaaaaggcaaaacttgggggacagtaaaaggctcagtg---gtgagggactgggggtaaggagg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86945470 337 +  95678458 acttacccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttatcact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactggggggaaggaag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602218 337 -  96509753 acttacccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----caatggaattatttatcact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactatatgacactttggaaaaggcgtaactttgga------aaaaggctcagta---gtgagggactggggggaaggaag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82430497 319 +  90941950 acttacccaaaggagttgagaccttatgcccacacaaaaacctgcaaagggatgtttacagcagcttcaTCTTTAGTTGTCAGaacttgaaagcaaccaagatgttcttcag----caggtgaatggataaactgtggtacagc----CAATGGAATTATTTATCACT--------AAAAAGAAACAAGCTATCAAGTCATGAAAGGACATGGTTGAACATTAAATGCACATTACTAAG-TGGATGAAGCCAATCT--AAAAGGCTACCTACTATATAATCTCAACTATATGAC-----------------ACTTTGGA------AAAAGGCTCAGTA---GTGAGGGACTGGGGGGAAGGAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691230 337 +  33263144 acttacccaaaggagttgagaccttatgcccacacaaaaaccagcaaagggatgtttacagcagcttcatctttagttgtcagaacttgaaagcaaccaagatgttcttcag----caggcgaatggataaactgtggtacagc----caatggaattatttgtcact--------aaaaagaaacaagctatcaagtcatgaaaagacatggttgaaccttaaatgcacattactaag-tggatgaagccaatct-aaaaaggctacctactatataatctcaactataggacactttggaaaaggcataactttgga------aaaaggctcagta---gtgagggaggggggggaaggaag
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82806922 335 + 104043685 ----------------tgaaaacgtgtgcttacacagaaacctgcacag---tatttatggtagctctatttataagtgcccaaa-ttggaagcaataaagatgtcctttggcaaacaggaagtaggaaaaactg-ggcatatctagacaatagagtatttttttggcagcaacaaaaaaaaaaatgaactttgtagccat--aaatacatgaaggaaccataaacatgtatcactaagttggaaacagccaatct-gaagtggctatacactgtatga--ctaactatacaccactctagaaaaggcaaaactatgatgatgataaaaagaccattggctgtcaggttttgga---aaggaag
i mm10.chr15                C 0 I 78
s canFam3.chr10              46079376 302 -  69331447 actgacccagaggcgttgagaaccgatgtccacacaaaaatctgcacacagataattgtagcagctttattcacaatcgccaaaacttggaagcaaccaagatgtctctggg----gaggtga----gcaaaaggtaggacatctggacaa-----ttcttcggtact--------aaaaagaaacgagctaccaagccac--caagacgtgggggacccttaaat----atcactgag-tgaaggaggcc--cct-gacaaggccacgcactataggattccagccatgcaacgatcaggaggcgggagggc---------------aggctgagcg---ctgaggagct-------------
i canFam3.chr10             I 418 C 0
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=164926.000000
s hg38.chr22_GL383582v2_alt     68740 82 +    162811 aatgaacagtgggacacggaggatccctggagcagtgaaactactctg-gatcatggtgcgtcctcgtc-ttttt-------gagacagga
s panTro4.chr22              40893287 82 +  49737984 aatgaacagtgggacacggaggatccctggagcagtgaaactactctg-gatcatggtgcgtcctcgtc-ttttt-------gagacagga
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436593 83 +  46535552 aatgaacagtgggacacagaggatccctgaggcagtgaaactactctg-gataatggtgggtccacgtc-tttttc------gagacagga
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106642334 89 - 115148730 aatcaacagtgggacacagaggatccctggggcagtgaaactactctg-gataatggtgggtccatgtc-tttttttttttggagacagga
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86945807 85 +  95678458 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctg-gataatggtgggtccacgtctttttttttt---gatacagga
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602555 84 -  96509753 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctg-gataatggtgggtccacgtc-ttttttttt---gagacagga
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82430816 85 +  90941950 AATGAACAGTGGGACA--GAGGATCCCTGGGGCAGCGAAACTACTCTG-GATAATGGTGGGTccacgtctttttttttt---gagacagga
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691567 84 +  33263144 aatgaacagtgggaca--gaggatccctggggcagtgaaactactctg-gataatggtgggtccacgtc-ttttttttt---gagacagga
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46079678 32 -  69331447 --------------------------ctggggcagcggggcgactgtgtgacactgga---------------------------------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82807257 78 + 104043685 I
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=390701.000000
s hg38.chr22_GL383582v2_alt     68822 159 +    162811 ttttgctgtcacccaggctgaagtgtggtggcgcgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagctgagactacaggcatgcaccatcatgcctggctaatttttgtatttttatgtagag
s panTro4.chr22              40893369 159 +  49737984 ttttgctgtcacccaggctgaagtgtggtggcacgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagctgagactacaggcatgcaccatcatgcctggctaatttttgtatttttatgtagag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436676 159 +  46535552 ttttgctgtcacccaggctgaagtgtggtggtgcgatcacgactcactgtagcctcaacctcctgggctcaagtgatcctcccagctcagcctcccaagtagctgagactacagacgtgcaccatcatgcctggctaatttttgtatttttatgtagag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106642423 158 - 115148730 ttttgctgtcacccaggctgaagtgtggtggcgcgatcacgactcactgtagcctcgacctcctgggctcaagtgatcctcccatctcagcctcccaagtagccgagactacaggcgtgcaccatcatgcccgactaa-ttttgtatttttatgtggag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86945892 159 +  95678458 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaagcgtgcatcatcacgcctggctaatttttgtatttttatgtagag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602639 159 -  96509753 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaagcgtgcatcatcacgcctggctaatttttgtatttttatgtagag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82430901 159 +  90941950 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaggcgtgcatcatcacgcccggctaatttttgtatttttatgtagag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691651 159 +  33263144 ttttgctgttgcccaggctggagtgtggtggcgcgatcacggctcactgtagcctcgacctcctgggctcaagcgattctcccatctcagcctcccaaatagctgagactacaggcgtgcatcatcacgcccagctaatttttgtatttttatgtagag
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82807257  78 + 104043685 I
e canFam3.chr10              46079710   0 -  69331447 C
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=208272.000000
s hg38.chr22_GL383582v2_alt     68981 111 +    162811 atggggtttcgccatgttgcccaggctgttctcgaactcaagc---gatacacccacctgagcctcccaaaatgctgggattataggcgagagccaccacgccctgccagatcc
s panTro4.chr22              40893528 111 +  49737984 atggggtttcgccatgttgcccaggctgttctcgaactcaagc---aatacgcccacctgagcctcccaaaatgctgggattataggcgagagccaccacgccctgccagatcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436835 111 +  46535552 atggggttttgccatgttgcccaggctgttctcgaactcaagc---gatccacccacctgagcctcccaaaatgctgggattataggcgagagccaccacgccctggcagatcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106642581 111 - 115148730 atggggtttcaccatgttgcccaggctgttctcgaactcaagc---gatccgcccacctgagcctcccaaaatgctgggattataggtgagaggcaccacaccctgccagatcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86946051 106 +  95678458 agggggtt--------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggattataggcatgagccaccacaccctgccagatcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602798 106 -  96509753 agggggtt--------ttgcccaggctgttctcgaattcaagccttgatctgcccacctgagcctcccaaaatgctgggattataggcatgagccaccacgccctgccagatcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82431060 106 +  90941950 aGAGGAGT--------tttgccaggctgttctcgaattcaAGCCTggatctgcccacctgagcctcccaaaatgctgggattataggcatgagccaccacaccctgccagatCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691810 113 +  33263144 atggggttttgccacgttgcccaggctgttctcgaattcaagccttgatctgcccccctgagcctcccaaaatgctgggattataggcatgagcc-ccacgccctgccagatcc
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46079710  20 -  69331447 -------------------------------------------------------------------------------atggggggtgcgcgccacta---------------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82807257  78 + 104043685 I
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=33263.000000
s hg38.chr22_GL383582v2_alt     69092 19 +    162811 aggtctttatacatttgtc
s panTro4.chr22              40893639 19 +  49737984 aggtctttatacatttgtc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436946 19 +  46535552 aggtctttatacatttgtc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106642692 19 - 115148730 aggtctttattcatttgtc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86946157 19 +  95678458 aggtcttcacacacttgtc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602904 19 -  96509753 aggtcttcacacacttgtc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82431166 19 +  90941950 AGGTCTTCACACATTTGTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691923 17 +  33263144 gggtcttcacacg--tgtc
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82807335 19 + 104043685 aagtttgtgtaaatctatg
i mm10.chr15                I 78 C 0
s canFam3.chr10              46079730  3 -  69331447 --gtc--------------
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1937024 1864 -   2117846 I

a score=1785515.000000
s hg38.chr22_GL383582v2_alt     69111 575 +    162811  
s panTro4.chr22              40893658 556 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37436965 574 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106642711 576 - 115148730  
i nomLeu3.chr7b             C 0 M 100
s rheMac3.chr10              86946176 579 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87602923 579 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82431185 580 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24691940 577 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1938888 580 -   2117846  
i calJac3.chrUn_GL286373    I 1864 C 0
s mm10.chr15                 82807354 571 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46079733 516 -  69331447  
i canFam3.chr10             C 0 C 0

a score=761711.000000
s hg38.chr22_GL383582v2_alt     69686 239 +    162811 TCCTGTTCAGTTGCCTAAGCTTGGTCCTACGGCCGGCACGGCGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGG-----ACTGCTTGATGTAGCCATTAAAATACAATTAATCTGCCATTTCTGCTGCCCC-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTGCTTCACAATATTCCTTCCAGTATTTCCATTCTCTAAA-AAAGTCCATTAACATTCCATT
s panTro4.chr22              40894214 239 +  49737984 TCCTGTTCAGTTGCCTAAGCTTGGTCCTACGGCCGGCACGGCGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGG-----ACTGCTTGATGTAGCCATTAAAATACAATTAATCTGCCATTTCTGCTGCCCC-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTGCTTCACAATATTCCTTCCAGTATTTCTATTCTCTAAA-AAAGTCCATTAACATTCCATT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37437539 238 +  46535552 TCCTGTTCAGTTGCCCAAGTTTGGTCCTACAGCCGGCACGTCGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGG-----ACTGCTTGATGTAGCCATTAAAACACAATTAATCTGCCATTTCTGCTGCCCC-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTATTCTCTAAA-AGAGT-CATTAACATTCCATT
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86946755 239 +  95678458 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAATGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGG-----ACTGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTGCCCT-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCTCTAAA-AAAGTCCATTAACATTCCATT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87603502 239 -  96509753 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAATGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGG-----ACTGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTGCCCT-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCTCTAAA-AAAGTCCATTAACATTCCATT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82431765 239 +  90941950 TCCTGTTCAGTTGCCCAAGCTTGGTCCTATGGCCGACACAACGCACCCACCCACACCT-----CCATCCTGGCGGAGTGAAATGAGAAATGG-----ACTGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTGCCCT-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCTCTAAA-AAAGTCCATTaacattccatt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24692517 239 +  33263144 TCCTGTTCAGTTGCCCAAGCTTGGTCCTACGGCCAACACAACGTACCCACCCACACCT-----CCATCCTGGCAGAGTGAAATGAGAAATGG-----ACTGCTTCATGTAGCGATTAAAACACCATTAATCTGCCATTTCTGCTGCCCT-AAATTGATGAACAC---AGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTACTCTCTAAA-AAAGTCCATTAACATTCCATT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1939468 237 -   2117846 TCCTGCTCAGCTGCCCAAGTGTCGTCCCACGGCCGACACAGTGCGCCCACTCACACCT-----CCATCCTGGTAGAGTGAAATGAGAAATGG-----ACTGCTTGATGTAGCCATTAAAACAAAATT-ATCTGCCATTTCTGCTGCCCCAAAATTGATGAACAC---AGAACTCATTTATAATCGCTTATTTCTACTTCATAACATTCCTTCCAGCATTTCTATTCTCTAAA---AGTCGATTAACATTGCATT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82807925 251 + 104043685 TCTTGTCCAGCTGTCTGAGCACGGTCCCACAGCTGACACAGCACACAGCTCAACACTCATAAACCATCCACATGG-GTGTGGTGAGAAATGGACCACACTGCTTGGTATACCCA-TAGAGCAAAATTAACCTGCCATTTCTGCAACCCC-AAATTGATGAGCACATTAGAACTGATTTATAATTGCTTACTTCCAACTCAAAGGAGTATTTAAAATATTTGTTTTCTTTAAAAAAAATCCATTAACATTACATT
i mm10.chr15                C 0 C 0
s canFam3.chr10              46080249 222 -  69331447 ------------------------TCCCGTGGCCCGCGCAGCACACCCACCCACGCCT-----CCATCCTGGT-GAGGGAGATGAGAAATGGGCCGCGCTGCTTGATGGAGCCATTAAAACAGAATTAATCTGCCATTTCTGCAGCCCC-AAATTGATGAGCACACAAGAACTCATTTATAATTGCTTATTTCTACTTCACAACATTCCTTCCAGTATTTCTGTTCGCTAGA-AAAGTCCATTAACATTGCATT
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106643287 100 - 115148730 M

a score=7065267.000000
s hg38.chr22_GL383582v2_alt     69925 1836 +    162811  
s panTro4.chr22              40894453 1848 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37437777 1845 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106643390 1842 - 115148730  
i nomLeu3.chr7b             M 100 C 0
s rheMac3.chr10              86946994 1725 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87603741 1815 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82432004 1822 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24692756 1824 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1939705 1807 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82808176 1813 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46080471 1738 -  69331447  
i canFam3.chr10             C 0 I 352

a score=560551.000000
s hg38.chr22_GL383582v2_alt     71761 198 +    162811 CTAGTGGGGGTGCTGGGGTTGGACTCTGAGGGCTCCTCAGGGCATGTCTGCCTTCCTAGTGCATAAAGGAACCAGTACAGCAGAGAACTCCCTGACCT-CAGGGCAGG-CCCCACTTGTGGGGCAGCTGGTG---GGGCTTTGCCAGTGTC---AGGACCCCAG---------------------------------------------------------TTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
s panTro4.chr22              40896301 198 +  49737984 CTAGTGGGGGTGCTGGGGTCGGACTCTGAGGGCTCCTCAGGGCATGTCTGCCTTCCTAGTGCATAAAGGAACCAGGACAGCAGAGAACTCCCTGACCT-CAGGGCAGG-CCCCACTTGTGGGGCAGCTGGTG---GGGTTTTGCCAGTGTC---AGGACCCCAG---------------------------------------------------------TTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37439622 198 +  46535552 CTAGTGGGGGTGCTGAGGCCGAACTCTGAGGGCTCCTCAGGGCATGTCTGCCTTCCTAGTGCATAAAGGAACCAGGACAACAGAGAACTCCCTGACCT-CAGGGAGGT-CCCCACTTGTGGGGCAGCTGGTG---GGGTTTTGCTAGTGTC---AGGACCCCAG---------------------------------------------------------CTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106645232 198 - 115148730 CTAGTGGGGGTGCTGGGGCCGGACTCTGAGGGCTCCTCAGGGCATGTCTGCCTTCCTAGTGCATAAAGGAACCAGGACAGCAGAGAACTCCCTGACCT-CAGGGCTGG-CCCCACTTGTGGGGCAGCTGGTG---GGGTTTTGCCAGTGTC---AGGACCCCAG---------------------------------------------------------CTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86948719 198 +  95678458 CTAGTGGGGGTGCTGGGGCCAGACTTTGAGGGCTCCTCAGGGTATATCTGCCTTCCTAGTGCATAAAGGAACCAGGACAGCAGAGAACTCCCTGACCT-CAGGGCAAGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGCCAGTGTC----GGACCCCAG---------------------------------------------------------CTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87605556 198 -  96509753 CTAGTGGGGGTGCTGGGGCCAGACTTTGAGGGCTCCTCAGGGTATATCTGCCTTCCTAGTGCATAAAGGAACCAGGACAGCAGAGAACTCCCTGACCT-CAGGGCAAGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGCCAGTGTC----GGACCCCAG---------------------------------------------------------CTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82433826 198 +  90941950 CTAGTGGGGGTGCTGGGGCCAGACTTTGAGGATTCCTCAGGGTATATCTGCCTTCCTAGTGCATAAAGGAACCAGGACAGCAGAGAACTCCCTGACCT-CAGGGCAAGCCCCCAATTGTGGGGCAGCTGGTG---GGGTTTTGACAGTGTC----GGACCCCAG---------------------------------------------------------CTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24694580 198 +  33263144 CTAGTGGGGGTGCTGGGGCCAGACTTTGAGGGCTCCTCAGGGTATATCTGCCTTCCTAGTGCATAAAGGAACCAGGACAGCAGAGAACTCCCTGACCT-CAGGGCAAGCCCCCAGTTGTGGGGCAGCTGGTG---GGGTTTTGCCAGTGTC----GGACCCCAG---------------------------------------------------------CTG-------------TGACTGAAACCTACAGTACCTGGTCAATCTGTGGAAGAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1941512 225 -   2117846 CTAGTGGGGGTGCTGGGGCTGGACTCTGAGGCCTCCTCAGCGCATGTCTG----CCTAGTGCATAAAGGAGGCAGGACAGCAGAGAACTCCCTGACCT-CAGGGG-------------------AGCTCGTG---GGGCCTCACCAGCGTC---AGGACCCCAGCACTGGC-----------TGGCAAGTCTGGGTTCTCACAGAGG----------TGGCCTGAGGCATCCAGCGCTGACTGAAACCTAGAGTACCTGGTCAATCTGTGGAAGAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82809989 215 + 104043685 ACAA-GAGAAT------------------GGGCCTTACAGGG-----------------------AAGGGGCCAAAACAGGAGAGTATTCCTTGACCTCCATGACTGGGCCCTGTTTGAG----AGTTTGTGTATGAATCTTGCCAGCATAGTAAGGTCTGTGG--TTGGCTCAATAACTTGTAGCAAGGCTCAGTCCTCAAAGTAGCTAAGAGTATTCTATTG-------------TTACTGAAACCTAGAGCACCTACCCAAATTGTGGAAGGA
i mm10.chr15                C 0 I 25
e canFam3.chr10              46082209 352 -  69331447 I

a score=1112853.000000
s hg38.chr22_GL383582v2_alt     71959 421 +    162811 ACTTCTCGAAGTCCAGCCTTTTAGGACAGTTTCACAGCTGCCTCTAGTCAACACAGCTAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacacgccaccatgcttggctaatGACAGTCttttttttttttttttttttttttttttttttgagacag--tcttgctctattgcccagactggagtgtagtggtgtgctcttggctcactgcagcctctgccccctgggttcaagtgattcttgtgcctcagcctcccaaatagctgggatcacaggtgcacgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt
s panTro4.chr22              40896499 416 +  49737984 ACTTCTCGAAGTCCAGCCTTTTAGGACAGTTTCACAGCTGCCTCTAGTCGACACAGCTAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacacgccaccatgcttggctaatGACAGTCttttttttttttttttttttttttttt-----gagacag--tcttgctctattgcccagactggagtgtagtggtgtgatcttggctcactgcagcctctgccccctgggttcaagtgattcttgtgcctcagcctcccaaatagctgggatcacaggtgcatgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37439820 410 +  46535552 ACTTCTCGAAGTCCAGCCTCTTAGGACAGTTTCACAGCTGCCTCTAGTCGACACAGCTAGttgtttgtttttgagacaagacatcgctctgtcgccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacacgccaccatgcttgggtaatGACAAAGtcttttttttttttttttttt-----------gagatag--tcttgctctactgcccagactggagtgtagtggtgcgatcttggctcactgcagcctctgcctcctgggttcaagtgattcttgtgcctcagcctcccaagtagctgggatcacaggtgcacgccaccacacccggctaatttttgtatttttaggagagatgtggttttgccatgtt
i ponAbe2.chr22             C 0 I 4
s nomLeu3.chr7b             106645430 417 - 115148730 ACTTCTCGAAGTCCAGCCTCTTAGGACAGTTTCACAGCTGCCTCTAGTCGACACAGCTAGttgtttgtttttgagacaagacatggctctgtcaccttggctccctgcagccttgacctcctgggctcaagcaatcctcccacctcagccttcc-aagtagctgggacta-caggtacacgccaccatgcttggctaatGACAAAGTCAtttgttttttgtttttttttttttt----gagacag--tcttgctctattgcccagactggagtgtagtggtgcgatcttggctcactgcagcctccgcctcctgggttcaagtgatttttgtgcctcagcctcccgagtagctgggatcacaggtgcacgccaccacacctggctaatttttgtatttttaggagagatgtggttttgccatgtt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86948917 393 +  95678458 CCTTCTCGAAGTCC-GCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCGACACAGCTAG----CTGtttttgagacaa-atctcactctgtcgcctcggctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacacgccaccatcctcagctaatGACAAAG---------tttttttttttt-----------gagacagaatcttg--ctgttgcccagacgggactgcagtgatacgatcttggctcactgcggcctccgcctcctgggttcaagtgattcttgtgcctcaggctccagaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt
i rheMac3.chr10             C 0 I 11
s macFas5.chr10              87605754 394 -  96509753 CCTTCTCGAAGTCC-GCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCGACACAGCTAG----CTGtttttgagacaa-atctcactctgtcgcctcggctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacacgccaccatcctcagctaatGACAAAG--------ttttttttttttt-----------gagacagaatcttg--ctgttgcccagactggactgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcctgtgcctcagcctccagaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt
i macFas5.chr10             C 0 I 4
s papAnu2.chr10              82434024 394 +  90941950 CCTTCTCGAAGTCCAGCCTCTTAGGACAATTTCACAGTTGCCTCTAGTCGACACAGCTAG----CTGTTTTTGAGacaa-atctcactctgtcgcctcggttccctgcagccttga---ccgggactcaagcaatcctcccacctcagccttcc-aagtagctgggactaccaggtacacgccaccatccTCAGCTAATGacgaag---------tttttttttttt-----------gagacagaatcttg--ctgttgcccagactggagtgcagtgatacgatcttcgctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctcccgaatagctgggatcacaggtgcacaccaccacacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt
i papAnu2.chr10             C 0 I 4
s chlSab2.chr19              24694778 400 +  33263144 CCTTCTCGAAGTCCAGCCTCTTAGGACAGTTTCACAGTTGCCTCTAGTCGACACAGCTAG----CTGtttttgagacaa-atctcactctgtcgcctcggctccctgcagccttga---ccggggctcaagcaatcctcccacctcagccttccaaaacagctgggactaccaggtacacgccaccatcctcagctaatGACAAAGt------tttttttttttttt-----------gagacagaatcttgctctgttgcccagactggagtgcagtgatacgatcttggctcactgcagcctccgcctcctgggttcaagtgattcttgtgcctcagcctcctgaatagctgggatcacaggtgcacaccaccatacccggctaatttttgtatttttaggagagatgtggtttcgccatgtt
i chlSab2.chr19             C 0 I 11
s calJac3.chrUn_GL286373      1941737 407 -   2117846 TCTTCTCAAAGTCCAGCCACTTAGGACAGTTTCACAGTTGCCTCTAGTCGACACAGCTAGTTGTTTGTTTCTGAAACAAAGTCTCACTCTGTTGTCTTAgctccctgtagccttgaattcccaggctcaagcaatcctcccacctcagccttcc-aaggcactgggacta-caggtacatgccaccatgctcggctaatGACAAAG---TCAGttttgttttgtttt-----------cagacagagtcttgctctgttgcccagactggagtgcagtggtgtgatcttggctcactgcagcctccacctcccaggttcaagtgattcttctgcctcagccaaccgagtatctgggatcacaggtgcacgacaccacacccagctaatttttg--tttttagtagagatgtggtttcattgtgtt
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82810204  25 + 104043685 I
e canFam3.chr10              46082209 352 -  69331447 I

a score=13597.000000
s hg38.chr22_GL383582v2_alt     72380 28 +    162811 ----aggctggtctagaactcctggccccagc
s panTro4.chr22              40896915 28 +  49737984 ----aggctggtcttgaactcctggcctcagc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37440234 28 +  46535552 ----aggctggtcttgaactcctggcctcagg
i ponAbe2.chr22             I 4 C 0
s nomLeu3.chr7b             106645847 27 - 115148730 ----aggctggtcttgaactcctggcctcag-
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87606152  7 -  96509753 ----agggtgg---------------------
i macFas5.chr10             I 4 C 0
s papAnu2.chr10              82434422  8 +  90941950 ----agggtggt--------------------
i papAnu2.chr10             I 4 C 0
s calJac3.chrUn_GL286373      1942144 32 -   2117846 ggccacgctgatcttgatttcctggcctcagg
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82810204 25 + 104043685 I
e canFam3.chr10              46082209 352 -  69331447 I
e chlSab2.chr19              24695178 11 +  33263144 I
e rheMac3.chr10              86949310 11 +  95678458 I

a score=196749.000000
s hg38.chr22_GL383582v2_alt     72408 66 +    162811 tgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggccCAC
s panTro4.chr22              40896943 66 +  49737984 tgatttgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggccCAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37440262 66 +  46535552 tgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggccCAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106645874 64 - 115148730 tgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccact--acacctggcc--C
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86949321 66 +  95678458 tgatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggcctggccCAC
i rheMac3.chr10             I 11 C 0
s macFas5.chr10              87606159 66 -  96509753 tgatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggcctggccCAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82434430 65 +  90941950 -gatctgcccacctcggcctcctaaagtgctgggattacaggcatgagccact--aggccTGGCCCAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24695189 66 +  33263144 tgatctgcccaccttggcctcctaaagtgctgggattacaggcgtgagccact--aggcctggccCAC
i chlSab2.chr19             I 11 C 0
s calJac3.chrUn_GL286373      1942176 68 -   2117846 tgatctgcccacctcagtctcccaaagtgctgggattacaggtgtaagccactgcgcgcctggccCAT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82810204 25 + 104043685 I
e canFam3.chr10              46082209 352 -  69331447 I

a score=514011.000000
s hg38.chr22_GL383582v2_alt     72474 158 +    162811 AGTCAGTTCTTCATGCTTAAAAAGAACACTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAG--------GTTTTCTGAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTCGACCTCTCAGGAACCT-GAGACCCCTAGGTCTCCCATCCCCAGGCTGG-AGGGCTTCT
s panTro4.chr22              40897009 158 +  49737984 AGTCAGTTCTTCATGCTTAAAAAGAACACTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAG--------GTTTTCTGAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTCGACCTCTCAGGAGCCT-GAGACCCCTAGGTCCCCCATCACCAGGCTGG-AGGGCTTCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37440328 158 +  46535552 AGTCAGTTCTTCATGCTTAAAAAGAACACTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAG--------GTTTTCTGAGGCTCAGACACAGCTGGACTATGTTAATCCTTTCGACCTCTCAGAAGCCT-GAGACCCCTAGGTACCCCATCCCCAGGCTGG-AGGGCTTCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106645938 158 - 115148730 AGTCAGTTCTTCATGCTTAAAAAGAACGCTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAG--------GTTTTCTGAGGCTCAGACAGAGCTGGACTATGTTAATCCTTTTGACCTCTCAGGAGCCT-GAGACCCCTAGGTCCCCCATCCCCAGGCTGG-AGGGCTTCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86949387 158 +  95678458 AGTCAGTTCTTCATGCTTAAAAAGAATGCTCTTCCCACGGCCTCTAACAGGGAGG-------------GCAG--------GATTTCTGAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTTTCAGGAGCCT-GAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87606225 158 -  96509753 AGTCAGTTCTTCATGCTTAAAAAGAATGCTCTTCCCACGGCCTCTAACAGGGAGG-------------GCAG--------GATTTCTGAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTTTCAGGAGCCT-GAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82434495 158 +  90941950 AGTCAGTTCTTCATGCTTAAAAAGAATGCTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAG--------GATTTCTGAGGCTCAGACAGAGCGGGACTATGTTAATCCTCTCGACCTCTCAGGAGCCT-GAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24695255 158 +  33263144 AGTCAGTTCTTCATGCTTAAAAAGAATGCTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAG--------GATTTCTGAGGCTCAGACAGAGCTGGACTGTGTTAATCCTCTCGACCTCTCAGGAGCCT-GAGAACCCTAGGTCTCCCATCCCCAGGCTGG-GGGGCTTCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1942244 168 -   2117846 AGTCAGTTCTTGATACTTACAAACAATGTTCTTCCCATGGCCTCTAACAGGGAGG-------------GCAGGTCTCGCTGTTTTCTGAGGCTGAGACAGAGCTGGACTATGTTAATCCTCTTGACCTCTCAGGAGCCTGGAGGCCCCTAGGTCCCTCATCCCCAGGCTGGAGGGGCTTCT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82810229 152 + 104043685 AGTCTGTTCTTCATGC----AAATAAGACTTTT--CAGAACCTATGGTGGGGAGGTGGGATAGGCCTAGCCC--------ATTTTCTGAGGCTTGCATAGAGCTGGGA-GTTTTAATTCTATTAGTTCTTCAGGAACCT-GAGGTACTCAAG------------AGGCTCT-GGGGCTTCT
i mm10.chr15                I 25 C 0
e canFam3.chr10              46082209 352 -  69331447 I

a score=1219116.000000
s hg38.chr22_GL383582v2_alt     72632 364 +    162811 CTCCTCTTCCAGCCCATG-TGCAG-------AAGGGGATTCTGATGGCCCACGTAGGACAGATGGA----TTGTACCAAAGGTCCCTGTGGAACGCTTCATGGGCCATC----TGATGTGGAAAGGTCTCAAAGACAAACAGCAGTTTCCTAGGAATCAGTCCAGTAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTTGCCCCTCCTTCACTTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGACCAATTTGGTGCCCTCCCCTGAC----AAACCCCAAGAA--------CCCAAGTGTCACCAGCCCTTTCTGCTTCCATAAAGTT--CAC------ACACGCAGAACTGCTAAG--GCGGCTGG
s panTro4.chr22              40897167 364 +  49737984 CTCCTCTTCCAGCCCACG-TGCAG-------AAGGGGATTCTGATGGCCCACGTAGGACAGATGGA----TTGTACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTCAAAGACAAACAGCAGTTTCCTAGGAATCAGTCCAGTAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTTGCCCCTCCTTCACCTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGACCAATTTGGTGCCCTCCCCTGAC----AAACCCCAAGAA--------CCCAAGTGTCACCAGCCCTTTCTGCTTCCATAAAGTT--CAC------ACACGCAGAACTGCTAAG--GCGGCTGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37440486 396 +  46535552 CTCCTCTTCCAGCCCAGG-TGAAG-------AAGGGGATTCTGATGGCCCACGTAGGACTGATGGA----TTGTACCAAACGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTCAAAGAAAAACAGCAGTTTCCTAGGAATCAGTCCAGTAAAATTTCGGC----AGAAGCCAGAAGTGGTGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGCACTTGCTATCACTTGCTCCTTCACTTGCTATCTGCAATCACTGTG--CTT---------GACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGTCCAAATTGGTGCCCTCCCCTGAC----AAACCCCAAGAA--------CCCAAGTGTCACCAGCCCTTTTTGCTTCCATAAAGTT--CAC------ACACGCAGAACTGCTAAG--AAGGCTGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106646096 370 - 115148730 CTCCTCTTCCAGCCCAGG-TGCAG-------AAGGGGATTCTGATGGCCCACGTAGGACAGATGGA----TTGTACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----TGATGTGGAAAGGTCTCAAAGAGAAACAGCAGCTTCCTAGGTATCAGTCCAGTAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTCGTCCCTCCTTCACTTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGCCCAATTTGGTGCCCTCCCCTGACAAATAAACCCCAAGAA--------CCCAAGTGTCACCAGCCCTTTCTGCTTCCATAAAGTT--CAC------ACACGCAGAACTGCTTAGCTCCTGCTGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86949545 368 +  95678458 CTCCTCTTCCAGCCCAGG-TGCAG-------AAGGGGATTCTGATGGCCCACATAGGACAGATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTCAAAGAGAAACAGCAGTTTCCAAGGAATCAGTCCAGTAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGCCCAATTTGGTGCCCTCCCCTTACAAATAAACCCCAGGAA--------CCCAGGTGTCACCAGCCCTTTCTGCTTCCATAAAGTT--TAC------ACACACAGAACTGCTAAG--AAGGCTGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87606383 368 -  96509753 CTCCTCTTCCAGCCCAGG-TGCAG-------AAGGGGATTCTGATGGCCCACATAGGACAGATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTCAAAGAGAAACAGCAGTTTCCAAGGAATCAGTCCAGTAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGCCCAATTTGGTGCCCTCCCCTTACAAATAAACCCCAGGAA--------CCCAGGTGTCACCAGCCCTTTCTGCTTCCATAAAGTT--TAC------ACACACAGAACTGCTAAG--AAGGCTGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82434653 368 +  90941950 CTCCTCTTCCAGCCCAGG-TGCAG-------AAGGGGATTCTGATGGCCCACATAGGACAGATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTCAAAGAGAAACAGCAGTTTCCAAGGAATCAGTCCAGTAAAATTTCACC----AGAAACCAGAAGTGATGGCAGCCTCGCCCCTCCTTCACTTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTGGGGCTCACCTAACTGCTTCCTCAAGCCCAATTTGGTGCCCTCCCCTTACAAATAAACCCCAGGAA--------CCCAGGTGTCACCAGCCCTTTCTGCTTCCATAAAGTT--TAC------ACACACAGAACTGCTAAG--AAGGCTGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24695413 365 +  33263144 CTCCTCTTCCAGCCCAGG-TGCAG-------AAGGGGATTCTGATGGCCCACATAGGACAGATGGA----TTATACCAAAGGTCCCTGTGGAATGCTTCATGGGCCATC----CTATATGGAAAGGTCTCAAAGAGATACAGCAGTTTCCAAGGAATCAGTCCAGTAAAATTTCACC----AGAAACCAGAAGTGATAGCAGCCTCGCCCCTCCTTCACTTGCTATCTGC----------------------------------CAATCACTGTG--CTT-------AAGACTGTCACTAGGGCTC-----ACTGCTTCCTCAAGCCCAATTTGGTGCCCTCCCCTTACAAATAAACCCCAGGAA--------CCCAGGTGTCACCAGCCCTTTCTGCTTCCATAAAGTTTATAC------ACACACAAAACTGCTAAG--AAGGCTGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1942412 366 -   2117846 CTCCTCTTCCAGCCCAGT-TGCAG-------AAGGGGATTCTGATAGCCCACAAAGGACAGATGG-----TTGTACCAAAGGTCTCTGTAGAATGCTTCAC-GGCCATC----CCATGTGAAAAGATCTC--AGAGAAACAGTAGTTTCCAAGGAATCCATCAAGAAAAATTTCACC----AGAAGCCAGAAGTGGTGGCAGCCTCGCCCCTCCTTCACTTGCTTTCTGC----------------------------------CAATCACTGTGCTCTT-------AAGACTCTCACTGGGACTCAACTGACTGCTTCCTCAAGCCCAATTTGGTGTCCTCCACTGACAAATAAACCCCAGGAA--------CCCAGGTGTCACCAGCCCTTTCTGCTTCCATGAAGTT--CAC------ACATCCAGAACTGTTAAG--AAGGCTGG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82810381 377 + 104043685 CTCATCTATCATTTCTGGTTTCAG-------GAAGTTACTCTTATGACCCATGTAGGGCAAATAGACAGTTTGTTCAAGAGA---CTGAGGAGTGTTTCATGGTCTGTCTTATTTATATGAGAAGGGTTCAGGAAGACACAATAGTTTCCAAGGAATCAGTCCATAAAAATTACACC----AAAAGTCACTGTTGATGGCAA----GTTGCTCTCATCCTTGCTTTCTGC----------------------------------CAATATCTGCA--CTTTCTGCATCTATCTGTTTTGGGTGTTCTCTTTGTCTCTTCCTCAAACCTCTCCTGCTATCA-CCACCAACAGACAAACTTCAGGAAAAAACAGGCCTCTGTGTAATAA-------CTGCTTCCACAAAGCT--TAT------CAACAAGCACCAGCTGGG--AAGGCTGG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46082561 332 -  69331447 CTTCTCTTCCGGCCCAGG-CTCTGGGTCAGAAAGACGATCCTGACGACCCACGTGGGGCAGTGGGG----TTG-ACCGAGGGCCTCCTCAGAGAACTTCATGGGTCTCT----CCGTGCGCAGAG-TCTCAGAG-GACACAGCAGTTTCCAAGG-ATCAGTGCAGAACAATCAGAGCAGAAAGAAGCCGGCAGCGGCGGCGGCTT------------------------C----------------------------------CCATCAGAGCA--CCC--------------------------------CTTCTTCTCAGGGCCC--TCTGGTGCCCTCCTCCAACAAATAACCGTCAGGAAAA------CCCAGGCGGCACCACCGTTTTCTGTTCTCACACAACT--TACTAACAGGCAGGCAAAATGGTTCAG--AAGGCCGG
i canFam3.chr10             I 352 I 438

a score=499985.000000
s hg38.chr22_GL383582v2_alt     72996 168 +    162811 GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAGCACGTACATGCACATGCTCTTGCCCAAGGAGG-----------TTCCTGACTACTTGGCAGAAAACACCAATAAGCAGGAACACA---CACAGAGGCCATGGCACA-ACATCACCACAGACAAGTAAAAGCAAGCCCTGGGAATGCAGG
s panTro4.chr22              40897531 168 +  49737984 GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAGCACGTACATGCACATGCTCTTGCACAAGGAGG-----------TTCCTGACTACTTGGCAGAAAACACCAATAAGCAGGAACACA---CACAGAGGCCATGGCACA-ACATCACCACAGACAAGTAAAAGCAAGCCCTGGGAATGCAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37440882 165 +  46535552 GGCCTG--TGGGAGCTAAGATTGAGCTGTTCCCAAGCACGTACATGCACATGCTCTTGCCCAAGGAGG-----------TTCCTGACTACTTGGCAGAAAACACCAATGAGCAGGAACACA---CACAGAGGCCATGGC----ACATCACCACAGACAAGTAAAAGCAAGCCCTGGGAATGCAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106646466 168 - 115148730 GGCCTG--CGGGAGCTAAGATTGAGCTGTTCCCAAGCACGTACATGCACATGCTCTTGCCCAAGGAGG-----------TTCCTGACTACTTGGCAGAAAACACCAATGAGCAGGAACACA---CACAGAGGCCATGGCACA-ACATCACCACAGACAAGTAAAAGCAAGCCCTGGGAATGCAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86949913 171 +  95678458 GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAGCACGTACATGCACATGCTCTTGCCCACGGAAG-----------TTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCCACGGAGGCCACGACACA-TCACCACCACACGCAAGTAAAAGCAGGCCCTGGGAATGCAAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87606751 171 -  96509753 GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAGCACGTACATGCACATGCTCTTGCCCACGGAAG-----------TTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCCACGGAGGCCACGACACA-TCACCACCACACGCAAGTAAAAGCAGGCCCTGGGAATGCAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82435021 171 +  90941950 GGCCTG--CAGGAGCTAAGACTGAGCTATTCCCAAGCACGTACATGCACATGCTTTTGCCCACGGAAG-----------TTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCCACGGAGGCCACGACACA-TCACCACCACACGCAAGTAAAAGCAGGCCCTGGGAATGCAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24695778 171 +  33263144 GGCCTG--CAGGAGCTAAGATTGAGCTATTCCCAAGCACGTACATGCACATGCTCTTGCCCACAGAAG-----------TTCCTGACTACTTGGCAGGTAACACCAATGAGCAGGAACACATTCCACAGAGGCCACGGCACA-TCATCACCACACGCAAGTAAAAGCAGGCCCTGGGAATGCAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1942778 162 -   2117846 AGCCTG--GGGAAGCTAAGACTGAGCTGTTCCCA------TACACACACGTGCCCTTGCCCAAGGAGG-----------TTCCTGACTACTCACCAGAAAACACCAATGAGCAGGAATACACTCCACAGAGACCATGGC----ACATCACCACACACAGGTAAAGGCAGGCCCTGGGAATGCAGG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82810758 178 + 104043685 TGTGTGTCCCGGAGTGGAGAATGCACCATTCAGAAGcatatatacatatatacatatatatacatatacacatCTGCCCTTGCTAAGTGCTTTACA-AAAACACCAACAAGGAGGAAGACACTTTGCAGAGACAGCAGTGTATATACAACAACC------TAGACTCCAGCTCTGGGAATGTAGG
i mm10.chr15                C 0 I 572
e canFam3.chr10              46082893 438 -  69331447 I

a score=2375270.000000
s hg38.chr22_GL383582v2_alt     73164 835 +    162811  
s panTro4.chr22              40897699 835 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37441047 830 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106646634 836 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86950084 833 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87606922 833 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82435192 833 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24695949 827 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1942940 831 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82810936 572 + 104043685 I
e canFam3.chr10              46082893 438 -  69331447 I

a score=501418.000000
s hg38.chr22_GL383582v2_alt     73999 152 +    162811 AAAGAACATCACCTTGCTCCCCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCCCT--CACTTGTTCCCTCCC---TTCCCTTCTCGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGCCTGAACCCGG
s panTro4.chr22              40898534 152 +  49737984 AAAGAACATCACCTTGCTCCTCAGCTGCCAGCATCCAGGGTTTCGTCTCGGGCCAACACCTTCCCAGGCTCCCT--CACTTGTTCCCTCCC---TTCCCTTCTAGGTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGCCTGAACCCGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37441877 154 +  46535552 AAAGAACATCACCTTGCTGCTCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAAGCTCCCTCACACTTGTTCCCTCCC---TTCCCTTCTCGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGCCTGAACCCGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106647470 145 - 115148730 AAAGAACGTCACCTTGCTGCT-------CAGCATCCAGGGTTTTGTCTTGGGCCAACACCTTCCCAGGCTTCCT--CACTTGTTCCCTCCC---TTCCCTTTTCGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCCGTGGCCTGAACCCGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86950917 155 +  95678458 AAAGAACGTCATCTTGCTGCTCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCT--CACTTGTTCCCTCCCCCATTCCCTTCTCGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGCCTGAACCTGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87607755 155 -  96509753 AAAGAACGTCATCTTGCTGCTCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCT--CACTTGTTCCCTCCCCCATTCCCTTCTCGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGCCTGAACCTGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82436025 155 +  90941950 AAAGAACGTCATCTTGCTGCTCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCT--CACTTGttccctcccccattcccttcTTGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGCCTGAACCTGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24696776 155 +  33263144 AAAGAACGTCATCTTGCTGCTCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGCCAACACCTTCCCAGGCTCTCT--CACTTGTTCCCTCCCCCATTTCCTTCTCGCTCACACTGTCCTTTCTGCTCCCCTTTG--GCCTCATCTGTGGCCTGAACCTGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1943771 152 -   2117846 AAAGAACCACATCTTGCTGCTCAGCTGCCAGCATCCAGGGTTTCGTCTTGGGTTAACACCTTCCCAGGCTCCCT--CACTTGTTCCTTCGC---TTCCCTTCTCGCTCACACTGTCCTTTCTGCTCCTCTTCG--GCTTTATCCGTGGCCTGAACCCAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46083331 134 -  69331447 aaaaaaaaGCATCTTAAAGTCTGGCTGCCAGTGAGCAGGGTTTCACCTGGGGCCATGGCCTTCCAGGACTCCCT--C-----------------------TCTCAGTCACACTCCCACCTTCCCTCCCCTTCAGTGTCCCCTCTGTGGCCTGAACCCGG
i canFam3.chr10             I 438 I 586
e mm10.chr15                 82810936 572 + 104043685 I

a score=385213.000000
s hg38.chr22_GL383582v2_alt     74151 125 +    162811 GACGCCATCCTCGCGTCCTTCCACATCAGACTCCAAGCCTGCCTTTCCCAACTGCAGCAAAAACTCATCATCTCAACACCACTCACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCatttct
s panTro4.chr22              40898686 125 +  49737984 GACGCCATCCTCACGTCCTTCCACATCAGACTCCAAGCCTGCCTTTCCCAACTGCAGCAAAAACTCATCATCTCAACACCACTCACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCATTTCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37442031 125 +  46535552 GACGCCATCCTCACGTCCTTCCACATCAGACTCTAAGCCTGCCTTTCCCAACTGCAGCAAAAACTTATCATCTCAACACCACTCACCCTGGCCAGGATTCGCCCAGAGCCCATTTCCTCATTTCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106647615 125 - 115148730 GATGCCATCCTCACGTCCTTCCACATCAGACTCCAAGCCTGCCTTTCCCAACTGCAGCAAAAGTTCATCATCTCAACACCACTCACCTTGGCCAGGATTCGCCCAGAGCCCATTTCCTCATTTCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86951072 123 +  95678458 GACGCCGTCCTCATGTCCTTCCATAT--GACTCCAAGCCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTCACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87607910 125 -  96509753 GACGCCGTCCTCATGTCCTTCCATATCAGACTCCAAGCCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTCACTCTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82436180 125 +  90941950 GACGCCGTCCTCATGTCCTTCTGTATCAGACTCCAAGCCTGCCTTTTCCAATTGCAGCAAAAACTCATCATCTCAACACCACTCACTCTGGCCAGGATTTGCCCAGAGcccatttcctcatttct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24696931 125 +  33263144 GACGCCGTCCTCATGTCCTTCCATATCAGACTCCAAGCCTGCCTTTTCCAATTGTAGCAAAAACTTATCATCTCAACACCACTCACTTTGGCCAGGATTTGCCCAGAGCCCATTTCCTCATTTCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1943923 125 -   2117846 GATGCTGTCCTCACGTCCTTCCACATCAGACTCCAAGCCTGCCGTTACCAACTGCAGCAAAAACTCATCATTTCAATACCACTCAACCTGGCCAGGATTCACCCAGAGCCCGTTTCCTCATTTCt
i calJac3.chrUn_GL286373    C 0 I 409
e mm10.chr15                 82810936 572 + 104043685 I
e canFam3.chr10              46083465 586 -  69331447 I

a score=967409.000000
s hg38.chr22_GL383582v2_alt     74276 438 +    162811 aaaacagacactaattccgactagagagggaggatatgaagggaaacctaattctgaatctatactgattaagggcaccgatggtcagggtccaagagcccttttttcccTGGGAT-GCACTCAtttctttctttttttttttttttt-ttgagatg-gagtctcactctgtcgtccaggctggagtgcagtggcacgatctcagctcactgcaagctccacgtcccgggttcatgccattctcctgcctcagtctcccgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtatttttagtattttagtgttttaattttttgtatttttgtattgttagccaggatggtctcgatctcctgacctcgtgatctgccc------gcct-cccaaagtgctgggattataggcgttagccactgtgcccggc
s panTro4.chr22              40898811 436 +  49737984 AAAACAGACACTAATTCCGACTAGAGAGGGAGGATATGAAGGGAAACCGAATTCTGAATCTATACTGATTAAGGGCACTGATGGTCAGGGTCCAAGAGCCCTTTTTTCTCCGGGAT-GCACTCAtttctttctttttttttttttttt---gagatg-gaggctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaagctccacgtcccaggttcatgccattctcctgcctcagtctcccgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtatttttagtattttagtattttaattttttatatttttgtattgttagccaggatggtcttgatctcctgacctcgtgatctgccc------acct-cccaaagtgctgggattataggcgttagccactgtgcccggc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37442156 439 +  46535552 AAAATAGACATTAATTCCGACTAGAGAGGGAGGATATGAAGGGAAACCTAATTCTGAATCTATACTGATTAAGGGCACTGATGGTCAGGGTCCAAGAGTCCTTTCTTCTCTGGGAT-GCACTCAtttctttctttttttttttttttttttgagatg-gagtctcactctgtcacccaggctggagtgcagtggcgcgatctaggctcactgcaagctccacctcccgggttcatgccattctcctgcctcagtctcccaagtagctgggactactggcgcccaccaccacgcctggctaattttttgtatttttagtattttagtattttaattttttgtatttttgtattgttagccagaatggtctcgatctcctgacctcgtgatctgcct------gcct-cccaaagtgctgggattctaggcgtgagccactgcgcccggc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106647740 432 - 115148730 AAAACAGACATTAATTCCGACTAGAGAGGGAGGATATGAAGGGAAACCTAATTCTGAATCTATACTGATTTAGGGCACTGACGGTCAGGGTCCAAGAGCCCTTTCTTCTCTGGGAT-GCACTCAtttctttcttctttttttt--------gagatg-gagtctcactctgtcacccaggctggagtgcagcggcgtgatctaggctcactgcaagctccacctcccaggttcatgccattcttctgcctcagtctcctgagtagctgggactacaggtgcccaccaccacgcctggctaattttttatatttttagtattttagtattttaattttttgtatttttgtattgttagccaggatggtctcgatctcctgaccttgtgatccgcct------gcctccccaaagtgctgggattataggcataagccactgcgcccggt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86951195 432 +  95678458 AAAATAGACATTAATTCTGACTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGATTTAGGGCACTGATGGTCAGGGTCCAAGAGCCCTTTATTCTCTGGGATGGCACTAAtttc----ttatttttttcttttt-ttgagatgtgagtctcgccctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaac---------ttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccggcccctgacctcgcggcctggctgtctcggcct-cccaaagtgctgggattacaggtgtgagccaccgcgcccggc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87608035 445 -  96509753 AAAATAGACATTAATTCTGACTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGATTTAGGGCACTGATGATCAGGGTCCAAGAGCCCTTTATTCTCTGGGATGGCACTAAtttcttttttatttttttcttttt-ttgagatgtgagtctcgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccgtcccctgacctcgtgatctggccgtctcggcct-cccaaagtgctgggattacaggtgtgagccaccgcgcccggc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82436305 445 +  90941950 aaaatagACATTAATTCTGACTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGATTTAGGGCACTGATGGTCAGGGTCCAAGAGCCCTTTCTTCTCTGGGATggcactaatttcttttttatttttttcttttt-ttgagatgtgagtctcgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgactagctgggactacaggtgcctgctaccatgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatttttgta-tgttagccaggatggtctccgtcccctgacctcgtgatctgcccgtctcagcct-cccaaagtgctgggattacaggtgtgagccactgcgcccggc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24697056 445 +  33263144 AAAATAGACATTAATTCTGACTAGAGAGGAAGGATGTGAAGAGAAACCTAATTCTGAATCTATACTGATTTAGGGCACTAATGGTCAGGGTCCAAGTGCCCTTTCTTCTCTGGGATGGCACTAAtttcttttttatttttttcttttt-ttgagatgtgagtctcgctctgccacacaggctggagtgcagtggtgcgatctaggctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgctaccacgaccagctaacttttagtatttttagtattttcgtattttaattttttgtatctttgta-tgttagccaggatggtctccatcccctgacctcgtgatctgcccatctcggcct-cccaaagtgctgggattacaggtgtgagtcaccgtgcccggc
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82810936 572 + 104043685 I
e canFam3.chr10              46083465 586 -  69331447 I
e calJac3.chrUn_GL286373      1944048 409 -   2117846 I

a score=369644.000000
s hg38.chr22_GL383582v2_alt     74714 137 +    162811 cTGGGATGCactcatttctttaacacagactcacttggcactagcatagttacatg--------ccccgctctgggctaggctttgatggtgcaaagacagacgtggtccctgccctaatggagcttacagtctagtggagagac
s panTro4.chr22              40899247 137 +  49737984 cTGGGATGCactcatttctttaacacagactcacttggcactagcatagttacatg--------ccccgctctgggctaggctttgatggtgcaaagacagacgtggtccctgccctaatggagcttacactctagtggagagac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37442595 137 +  46535552 cTGGGATGCactcatttctttaacatagactcacttggcactagcatagttacatg--------ccccgctctgggctaggctttgatggtgcaaagacagacgtggtccctgccctaatggagcttacattctagtggagagac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106648172 136 - 115148730 cTGGGATGCactcatttctttaacacagactcacttggcactagcatagttacatg--------ccccgctctgggtt-ggctttgatggtgcaaagacagacgtggtccctgccctaatggagcttacattctagtggagagac
i nomLeu3.chr7b             C 0 M 100
s rheMac3.chr10              86951627 126 +  95678458 cTGGGATGCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTTACATG--------CACCGCTCTGGGCTAGGCTTT-----------gacagatgtggtccctgcccatgtggagcttacatgctagtggagagac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87608480 126 -  96509753 cTGGGATGCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTTACATG--------CACCGCTCTGGGCTAGGCTTT-----------gacagatgtggtccctgcccatgtggagcttacattctagtggagagac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82436750 126 +  90941950 ctgggatGCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCATAGTTACACG--------CACCGCTCTGGGCTAGGCTTT-----------GACAGATGTGGTCCCTGCCCatgtggagcttacattctagtggagagAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24697501 126 +  33263144 cTGGGATGCACTCATTTCTTTAACACAGACTCACCTGGCACTAGCACAGTTACATG--------CACCGCTCTGGGCTAGGCTTT-----------gacagatgtggtccctgcccatgtggagcttacattctagtggagagac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1944457 137 -   2117846 CTGGGATGCactcattcctttcacacagactcacttggcactagcatagttacacaattacatcccctgctctgggctaggctttgatggtacaaagatagacatggtccctgccctcatggagcttatattctaat--------
i calJac3.chrUn_GL286373    I 409 C 0
e mm10.chr15                 82810936 572 + 104043685 I
e canFam3.chr10              46083465 586 -  69331447 I

a score=391448.000000
s hg38.chr22_GL383582v2_alt     74851 171 +    162811 aggtagtaaacaagtaaatgatctgaaattgtggtgatgctaggatggctgcaagcgaggaggggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtaggatttaagctgagacccaggagatgggagcctgttttcaacatgaagatggggagc
s panTro4.chr22              40899384 170 +  49737984 aggtagtaaacaagtaaatgatctgaaattgtggtgatgctaggatggctgcaagcgaggaggggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtagcatttaagctaagacccaggagatgg-agcctgttttcaacatgaagatggggagc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37442732 170 +  46535552 gggtagtaaacaagtaaatgatctgaaatggtggtgatgctaggacggctgcaagtgaggagaggggcaatggagacaaggatttagaaagggaaaggcttctctgaggaagtagcatttaagctgagacccaggagatgg-agcctgttttcaacatgaagatggggagc
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86951753 170 +  95678458 aggtagtaaacaagtaaacgatctgaaattgtggtgaggctaggacggctgcaagtgaggagaggggcaatggaaacaaggatttagaaagggaaaggcttctctgaggatgcggcatttaagctgggactcaggagatgg-agcctgtttgcaacatgaagacggggagc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87608606 170 -  96509753 aggtagtaaacaagtaaacgatctgaaattgtggtgaggctaggacggctgcaagtgaggagaggggcaatggaaacaaggatttagaaagggaaaggcttctctgaggacgcagcatttaagctgggactcaggagatgg-agcctgtttgcaacatggagacggggagc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82436876 170 +  90941950 AGGTAGTAAACAAGTAAACGATCTGAAATTGTGGTGAGGCTAGGACGGCTGCAAGTGAGGAGAGGGGCAATGGAAACAAGGATTTAGAAAGggaaaggcttctctgaggacGCGGCATTTAAGCTGGGACTCAGGAGATGG-AGCCTGTTTGCAACATGAAGACGGGGAGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24697627 170 +  33263144 aggtagtaaacaagtaaacgatctgaaattgtggtgatgctaggacggctgcaagtgaggagaggggcaatggaaagaaggatttagaaagggaaaggcttctctgaggaagcggcattgaagctgggactcaggagatgg-agcctgtttgcaacatgaagacggggagc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1944594 169 -   2117846 aggtagtaaacaagtacatgatgtgaaatagtggtgatgctaggaaggctgcaagtgaggaaaggggcattggagacaaggatttagaaaggtaca-gtttctctgaggaactggcatttaagctgagacccaagagatga-agtctgtcttcaacatgacgatggggagc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82810936 572 + 104043685 I
e canFam3.chr10              46083465 586 -  69331447 I
e nomLeu3.chr7b             106648308 100 - 115148730 M

a score=896610.000000
s hg38.chr22_GL383582v2_alt     75022 316 +    162811 caaagtgtttccagcacaaggaactgtgtgtgcagaagcccagaggaaggaagcctggtccctgaggagctggaggcagccaggggcctggagAGTCACCTGAGACTTCCATAGGGCTCTGGAAGGCAAGGTGAGATGTCTGGGC-TTTGTGTGGAAGATGACAAGAAT-CTCTGACGTAGAGAAGGGACAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTGCTGAGCAGTGGCAGGGAGGCGGGCACTATAGCAGCCACA-ATGCCTGGGCTGGGGCTGGTGGGGAAGGAAAGT--GGACAGACTCAGGCTCT
s panTro4.chr22              40899554 316 +  49737984 caaagtgtttccagcacaaggaactgtgtgtgcagaagcccagaggaaggaagcctggtccctgaggagctggaggcagccaggggccgggagagtCACCTGAGACTTCCATAGGGCTCTGGAAGGCAAGGTGAGATGTCTGGGC-TTTGTTTGGAAGATGACAAGAAT-CTCTGACGTAGAGAAGAGACAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTGCTGAGCAGTGGCAGGGAGGCGGGCACTATAGCAGCCACA-ATGCCTGGGCTGGGGCTGGTGGGGAAGGAAAGT--GGACAGACTCAGGCTCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37442902 313 +  46535552 caaagtgtttccagcacaa-gaactgtgtgtgcagaagcccagagggaggaagcctggtccctgaggagctggaggcagccaggggcctggagAGTCACCTGAGACTTCCACAGGGCTCTGGAAGGCAAAGTGAGACGTCGGGGC-TTTGTTTGGAAGATGACAAGAAT-CTCTGACGTAGAG--GAGACAGGACTGGAGGGAGGCCTAATGAAGACTGCACGTGGCTGCTGAGCAGTGGCCGGGAGGCGGGCACTATAGCACCCACA-ATGCCTGGGCTGGGGCTGGTGGGGAAGGAAAGT--GGACAGACTCAGGCTCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106648411 305 - 115148730 CAaagtgcttccagcacaaggaactgtgtgtgcagaagcccagagggaggaagcctggtccctgaggagctggaggcagccaggggcctggagAGTCACCTGAGACTTCCACAGGGCTCTGGAAGGCAAGGTGAGACGTCTGGGC-TTTGTTTGGAAGATG-CAAGAATCCTCTGATG-----------CAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTGCTGAGCAGTGGCAGGGAGGCGGGCACTATAGCAGCCACA-ATGCCTGGGCTGGGGCTGGTGGGGAAGGAAAGT--GGACAGACTCAGGCTCT
i nomLeu3.chr7b             M 100 C 0
s rheMac3.chr10              86951923 318 +  95678458 taaagtgtttccagcacaaggaactgtgtgtgcagaagcccagagggaggcagcctgccccgtgaggaggtagagtaggccaggggcctggagAGTCACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGACTTTTATTTGGAAGATGACAAGAAT-CTCTGACGTAGAGAAGAGACAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTACTGAGCAGTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-ATGCCTGGGCTGGTGCTGGTGGGGAAAGAAAGTGGGGACAGACTTGGGCTCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87608776 316 -  96509753 taaagtgtttccagcacaaggaaccgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagagtaggccaggggcctggagAGTCACCTGAGACTTCCACAGGGCTCTGG-AGGCAAGGTGAGACATTTGGACTTTTATTTGGAAGATGACAAGAAT-CTCTGACGTAGAGAAGAGACAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTACTGAGCAGTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-ATGCCTGGGCTGGTGCTGGTGGGGAAAGAAAGT--GGACAGACTTGGGCTCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82437046 315 +  90941950 TAAAGTGTTTCCAGCACAAGGAAATGTGTGTGCAGAAGCCCAGAGGGAGGCAGCCTGCCCCCTGAGGAGGTAGAGGAGGCCAGGGGCCTGGAGAGTCACCTGAGACTTCTACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGAC-TTTATTTGGAAGATGACAAGAAT-CTCTGTCGTAGAGAAGAGACAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTACTGAGCAGTGGCAGGGAGGCGGGCACTATAGAAGCTGCA-ATGCCTGGGCTGGTGCTGGTGGGGAAAGAAAGT--GGACAGACTTGGGCTCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24697797 315 +  33263144 taaagtgtttccagcacaaggaattgtgtgtgcagaagcccagagggaggcagcctgccccctgaggaggtagaggaggccagGGACCTAGAGAGTCACCTGAGACTCCCACAGGGCTCTGG-AGGCAAGGTGAGACGTTTGGAC-TTTATTTGGAAGATGACAAGAAT-CTCTGACGTAGAGAAGAGACAGGACTGGAGGGAGGCCTAATGAAGATTGCACTTGGCTACTGAGCAGTGGCAGGGAGGCGGGCACTACAGAAGCTGCA-ATGCCTGGGCTGGTGCTGGTGGGGAAAGAAAGT--GGACAGACTCGGGCTCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1944763 316 -   2117846 cagagtgtttccagcacaaggtactatgtgttcagaagcccagagggagaaagcctggctcctgaggagctgtaggaggccaggtgcctggagAATCACCTGAGACTTCCACAGACCTCTGG-AGGCAAGGCGAGACATCTGGAC-TTTATTTGGAACGTAACAAGAAT-CTCGGACATAGAGAAGAGACAGGACTAGAGTGAGGCCTAATGAAGACTGTGTTTGGCTGCTGAGCAGTAGCAGAGAAGCAGGCACTATAGGAGTCACACAggcctgagctggggttggcaaggaaggaaagt--ggatagactctggctat
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82810936 572 + 104043685 I
e canFam3.chr10              46083465 586 -  69331447 I

a score=1121864.000000
s hg38.chr22_GL383582v2_alt     75338 389 +    162811 CCTCTGGAGGTGTAACCCT-GG--ACTGCCTCTGGACCAGTTTGGGGAAAGGGGAACTCTAGAATGTGACATTCATGCATACACACAAATGGACTGTGTGATGTCCAGCTCCAGGGG---CAGGGGGGCCACG-CCCCGTTCCCTGCCTTGCTCAGCGTCCATCCATGGCTGTTCTGTGCAGGGTACA-----------------TAGCATCCAGGATGCAGCATTAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACCACAGGGCCTGTTAGGGCAAGCTGGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGTATAGGGACTCCACTGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCAAGGCAA--CCCCCTTGGCACAAAGAGACAGTGGGCAAC
s panTro4.chr22              40899870 389 +  49737984 CCTCTGGAGGTGTAACCCT-GG--ACTGCCTCTGGACCAGTTTGGGGAAAGGGGAACTCTAGAATGTGACATTCATGCATACACACAAATGGGCTGTGTGATGTCCAGCTCCAGGGG---CAGGGGGGCCACT-CCCCGTTCCCTGCCTTGCTCAGCGTCCATCCATGGCTGTTCTGTGCAGGGTACA-----------------TAGCATCCAGGATGCAGCATCAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACCACAGGGCCTGTTAGGGCAAGCTGGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGTATAGGGACTCCACTGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCAAGGCAA--CCCCCTTGGCACAAGGAGACAGTGGGCAAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37443215 390 +  46535552 CCTCTGGAGGTGTAACCCC-GG--ACCGCCTCTGGACCAGTTTGGGGAAAGGCGAACTCTAGAATGTGACATTCATGCATACACACAAATGGGCTGTGTGATGTCCAGCTCCAGGGG---CAGGGGGGCCACTCCCCCCTTCCCTGCCTTGCTCAGCGTCCATCCATGGCTGTTCTGTGCAGGGTACA-----------------TAGCATCCAGGATGCAGCATCAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGGCCACAGGGCCTGTTAGGGCAAGCTGGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGTATAGGGATTCCACAGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCAAGGCAA--CCACCTTGGCACAAGGAGACAGTGGGCAAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106648716 389 - 115148730 CCTCTGGAGGTGTAAGCCC-AG--ACTGCCTCTGGACCAGTTTGGGGAAAGGGGAACTCTAGAATGTGACATTCATACATACACACAAATGGGCTGTGTGATGTCCAGCTCCAGGGG---CAGGGGGGCCACT-CCCCCTTCCCTGCCTTGCTCAGCGTCCATCCATGGCTGTTCTGTGCAGGGTACA-----------------TAGTATCGATGATGCAGCATCAGCCCTGATCAAGGTTAT-GCTTCCCATGTGCTGGACTACAGGGCCTGTTAGGGGAAGCTGGGGCCTCCTTGTTTAATTCATGACAGGAGGAAGAGCTGGGTATAGGGATTCCACTGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCAAGGCAA--CCACCTTGGCACAAGGAGACAGTGGGCAAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86952241 382 +  95678458 CCTCTGGAGGTGTAATCCC-GG--ACCACCTCTAGACCAGTCTGGGAAAAAGGTAA-TCTAGAATGTGACATTCATTCAT--ACACAAATGGGCTGTGTGACATCCAGTTCCAGGGG---CAGGGGCGCCACT-CCCCGTGCCCCGCTTTGCTCAGCTTCCATCCATGGCTGTTCTTTGCAGGGTACG-----------------TAGCATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGCCTGTTAGGGGAAGCTGGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT------TCCACTGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCACGACAA-TCCACCTTGGCAGAAGGAGACAGTGGGCAAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87609092 382 -  96509753 CCTCTGGAGGTGTAATCCC-GG--ACCACCTCTAGACCAGTCTGGGAAAAAGGTAA-TCTAGAATGTGACATTCATTCAT--ACACAAATGGGCTGTGTGACATCCAGTTCCAGGGG---CAGGGGCGCCACT-CCCCGTGTCCCGCTTTGCTCAGCTTCCATCCATGGCTGTTCTTTGCAGGGTACG-----------------TAGCATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGCCTGTTAGGGGAAGCTGGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGAGCTGGGCCT------TCCACTGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCAAGACAA-TCCACCTTGGCAGAAGGAGACAGTGGGCAAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82437361 382 +  90941950 CCTCTGGAGGTATAATCCC-GG--ACCACCtctagaccagtctgggaaaAAGGTAA-TCTAGAATGTGACATTCATTCAT--ACACAAATGGGCTGTGTGACATCCAGTTCCAGGGG---CAGGGGCGCCACT-CCCCGTGCCCCGCCTTGCTCAGCTTCCATCCATGGCTGTTCTTTGCAGGGTACG-----------------TAGCATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGCCTGCTAGGGGAAGCTGGGGCCTCCTTGTTTAATTCACAACAGGAGGAAGAGCTGGGCCT------TCCATTGTCAAAAGCTCTGCCAACCAATGACACAAGCCAGCAAGACAA-TCCACCTTGGCAGAAGGAGACAGTGGGCAAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24698112 382 +  33263144 CCTCTGGAGGTGTAATGCT-GG--ACCACCTTTAGACCAGTCTGGGAAAAAGGGAA-TCTAGAATGTGACATTCATTCAT--ACACAAATGGGCTGTGTGACATCCAGTTCCAGGGG---CAGGGGCGCCACT-CCCCGTGCCCTGCCTTGCTCAGCTTCCATCCATGGCTGTTCTTTGCAGGGTACG-----------------TAGCATCCAGGATGCAGCATTAGCCCTGATCAAGGTTATAGGTTCCCATGTGCTGGACCACAGGGCCTGTTAGGGGAAGCTGGGGCCTCCTTGTTTAATTCACGACAGGAGGAAGGGCTGGGCCT------TCCACTGTCAAAAGCCCTGCCAACCAATGACACAAGCCAGCAAGACAA-TCCACCTTGGCACAAGGAGACAGTGGGCAAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1945079 389 -   2117846 cctctggaggtataaccccagg--acctcctctggactagtttgaaaaaagggggactcgagaatgTGACATTCATTCAT--ACACAAATGGGCTGTGTGATGTCCAGCTCCAGGGG---CAGGGGGGCCACT-CCCCCTTCCCCGCCTTGCTTAGCTTCCATCCGTGGCTGTTCTGTGCAGGGTACA-----------------TAGTATGCAGGATGCAGCATCAGCCCCAGTCAAGGTTATTGCTTCCCATGTGCTGGATCACAGAGCCTGTGAGGGGAACCCAGGGCCTCCTTGTTTAATTTAGGATAGGAGGAAGAGCTGGGTATAGGGGTCCCATTGTCAAAAGCCCTGCCAACCAGTGACACAAACCAACAAAACCA--CGACCTTGGCAAAAGGAGCCAGTGGGCAAC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82811508 345 + 104043685 CTTTCAGAGGAGTAATCCC-AGTAGCACCCCCTGGATGAACCTAGG-----------GTTGGA--GTGACACTCATCTGT------GGATGGGCCATCTG-----CTGCCCCAGAGGGAACTGGGAGGATGCC-ATCC--------CTTTACTT--------TCCATGGCTGTTCTGTGTAGGGCATGTGGGTAGGTGCTATTCCTAGCATCCAGGACAGAGCATCACTTCAAATAATGGTTTCTGTTCCCTGTCTACTGCATCTCAGGATCTAGCAGAG-AAGCTATGGTCCCT-------ATCCACACCTGCAATCTAGCCCGAGAAT------AACAATCTTAGTATCACTG---------------AGCTACCGTGATGCTTTCTCATCCCCAGAAATGGGAGGTGGTCTAC
i mm10.chr15                I 572 C 0
e canFam3.chr10              46083465 586 -  69331447 I

a score=2442140.000000
s hg38.chr22_GL383582v2_alt     75727 755 +    162811  
s panTro4.chr22              40900259 755 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37443605 758 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106649105 756 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86952623 748 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87609474 748 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82437743 750 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24698494 751 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1945468 734 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82811853 712 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46084051 745 -  69331447  
i canFam3.chr10             I 586 I 57

a score=123371.000000
s hg38.chr22_GL383582v2_alt     76482 38 +    162811 CCAGAAGG------ATGAA-GCTCATTGTTCTGTTCAAGAGTT------gg
s panTro4.chr22              40901014 38 +  49737984 CCAGAAGG------ATGAA-GCTCATTGTTCTGTTCAAGAGTT------gg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37444363 38 +  46535552 CCAGAAGG------ATGAA-GCTCACTGTTCTGTTCAAGAGTT------gg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106649861 38 - 115148730 CCAGAAGG------ATGAA-GCTCATTGTTCTGTTCAAGAGTT------gg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86953371 38 +  95678458 CCAGAAGG------ATGAA-GCTCATTGTTCTGTTGAAGAGTT------gg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87610222 38 -  96509753 CCAGAAGG------ATGAA-GCTCATTGTTCTGTTGAAGAGTT------gg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82438493 39 +  90941950 CCAGAAGG------ATGAAGGCTCATTGTTCTGTTGAagagtt------gg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24699245 38 +  33263144 CCAGAAGG------ATAAA-GCTCATTGTTCTGCTGAAGAGTT------gg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1946202 44 -   2117846 CCAGAATG------ATGAA-GCTCATTGTTCTGTTCAAGAGTTGGTAGGgg
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82812565 44 + 104043685 CCGGGAAGTACAGAATACA-ACTCACTGTTCTGCTCAGGGTCT------GG
i mm10.chr15                C 0 I 846
e canFam3.chr10              46084796 57 -  69331447 I

a score=439585.000000
s hg38.chr22_GL383582v2_alt     76520 164 +    162811 ccgggcgccgtggctcacgcctgtaatcccggcactttgagaggtcaaggcgggaagatcacttgatgtcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagctgggcgtggtggtgcacacctgtagtcc
s panTro4.chr22              40901052 164 +  49737984 ccgggcgccgtggctcacgcctgtaatcccagcactttgagaggtcaaggcgggaagatcacttgatgtcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagcagggcgtggtggtgcacacctgtagtcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37444401 164 +  46535552 ccaggtgccgtggctcacgcctgtaatcccagcacttcaagaggccaaggcggggagatgacttgatgtcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagctggtcgtggtggtgcacgcctgtagtcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106649899 164 - 115148730 ccgggcgctgtggctcacgcctgtaatcccagcactttgagaggccaaggcggaaagatcacttgatgtcaggagttcaaggccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtagtcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86953409 156 +  95678458 ccgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacttgatgtgaggagttcaaggccagtctg--------ggtgaaaccccgtctctacaaaaaatataaaaattagctgggcgtggtggtgcacacctgtagtcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87610260 156 -  96509753 ccgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacttgatgtgaggagttcaaggccagtctg--------ggtgaaaccccgtctctacaaaaaatataaaaattagctgggcggggtggtgcacacctgtagtcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82438532 156 +  90941950 ccgggcacggtggctcacacctgtaatcccagcactttgggaggccaaggtaggcagatcacttgatgtgaggagttcaaggccagtctg--------gatgaaaccccctctctacaaaaaatataaaaattagctgggcggggtggtgcacacctgtagtcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24699283 156 +  33263144 ccaggcacggtggctcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacttgatgtgaggagttcaaggccagtctg--------ggtgaaaccccgtctctacaaaaaatataaaaattagctgggcggggtggtgcacgcctgtagtcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1946246 160 -   2117846 ctgggcacggtggctgatgcctgtaatcccag-actttgggaggctgaggagcgcgaatca--tgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctttactacaaatacaaaaa-tagctggatgtggtggtgcgcacctctaatcc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82812609 846 + 104043685 I
e canFam3.chr10              46084796  57 -  69331447 I

a score=191890.000000
s hg38.chr22_GL383582v2_alt     76684 67 +    162811 cagctactcgggagggctgaggcgggagaatcgcctgaaccccagagatggaggttgcagtgagccg
s panTro4.chr22              40901216 67 +  49737984 cagctactcgggagggctgaggcgggagaatcgcgtgaaccccagagatggaggttgcagtgagccg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37444565 66 +  46535552 cagctactcaaga-ggctgaggcgggagaatcgcctgaaccccagagatggaggttgcagtgagctg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106650063 66 - 115148730 cagctacttggga-ggctgaggcgggagaatcgcctgaacccaagagatggaggttgcagtgagccg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86953565 66 +  95678458 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87610416 66 -  96509753 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82438688 66 +  90941950 cagttactcggga-ggctgaggcgggagaattgcctgaaccccaGAGatggagactgcaatgagctg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24699439 66 +  33263144 cagctactcggga-ggctgaggcgggagaattgcctgaaccccagagatggagactgcagtgagctg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1946406 66 -   2117846 cagacactcagga-ggctgaggcaggagaatcgcttgaacccaggagatggaggttgcagtgaggcg
i calJac3.chrUn_GL286373    C 0 I 305
s canFam3.chr10              46084853 33 -  69331447 CTGCTCCGCGTGGGAGCCGAGG----------------------------------GCGGTCAGCTG
i canFam3.chr10             I 57 C 0
e mm10.chr15                 82812609 846 + 104043685 I

a score=1890101.000000
s hg38.chr22_GL383582v2_alt     76751 681 +    162811  
s panTro4.chr22              40901283 673 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37444631 679 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106650129 691 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86953631 686 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87610482 687 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82438754 683 +  90941950  
i papAnu2.chr10             C 0 M 508
s chlSab2.chr19              24699505 688 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1946777 692 -   2117846  
i calJac3.chrUn_GL286373    I 305 C 0
s canFam3.chr10              46084886 517 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82812609 846 + 104043685 I

a score=205349.000000
s hg38.chr22_GL383582v2_alt     77432 110 +    162811 AGAAGGCACTCAGCAGCCCCCACTTGACTTCTCAA----ATGGCGTGGCA-----GCCGAGGGGCCTTCTCCGGAAATTAGTAGTGGTAAC-------------------------AAGGAGGAGGGC---------------------------------------------ACGTTCCAG---AAGGTGG
s panTro4.chr22              40901956 110 +  49737984 AGAAGGCACTCAGCAGCCCCCACTTGACTTCTCAA----ATGGTGTGGCA-----ACCGAGGGGCCTTCTCCGGAAATTAGTAGTGGTAAC-------------------------AAGGAGGAGGGC---------------------------------------------ACGTTCCAG---AAGGTGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445310 110 +  46535552 AGAAGGCACTTAGCAGCCCCCACTTGACTTCTCAA----ATGGCGTGGCA-----GCCGAGGGGCCTTCTCCGGAAATTAGTAGTGGTAAC-------------------------GAGGAGGAGGGC---------------------------------------------ACGTTCCAG---AAGATGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106650820  91 - 115148730 AGAAGGCACTTAGCAGCCCCCACTTGACTTCTCAA----AT------------------------TTTCTCCGGAAATTAGTAGTGGTAAC-------------------------AAGGAGGAGGGC---------------------------------------------ATGTTCCAG---AAGGTGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86954317 103 +  95678458 AGAAGGCACTTAG-------CACCTGACTTCTCAA----ATGGTGCGGCA-----GCCCAGGGGCCTTTTCTGGAAATTAGTAGTGGTAAC-------------------------AAGGGGGAGGGC---------------------------------------------ATGTTCCAG---AAGGTGA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87611169 103 -  96509753 AGAAGGCACTTAG-------CACCTGACTTCTCAA----ATGGTGCGGCA-----GCCCAGGGGCCTTTTCTGGAAATTAGTAGTGGTAAC-------------------------AAGGGGGAGGGC---------------------------------------------ATGTTCCAG---AAGGTGA
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24700193 103 +  33263144 AGAAGGCACTTAG-------CACCTGACTTCTCAA----ATGGTGCGGCA-----GCCCAGGGGCCTTCTCTGGAAATTAGTAGTGGTAAC-------------------------AAGGGGGAGGGC---------------------------------------------ATGTTCCAG---AAGGTGA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1947469 109 -   2117846 AGAAGGTACTTATCAGCCCCCACCTGACTTCTCAA----ATGGTGCGGCA-----GCCGAGGGGCCTTCTCTGCAAGTCAGTAGTGGTAA--------------------------AAGGGGAAGCGC---------------------------------------------ACGATCCAG---AAGGTGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46085403 181 -  69331447 AGAGTGCAC-----------CACAGGCCTCTACAGCCCCAGGGCCCCACACTCAGACCAGGGGGGCTTCTCTGGAATTCAGGACCAGGACCCATGTAAGAAACCGAGGACTTCTCAAAGGAGGAAAACTGCCTCTGTCTGAGATGAATTCTATTTTTTCCTTAAATTAGTTAGGTATTCCAGAGAAAGGTGG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82812609 846 + 104043685 I
e papAnu2.chr10              82439437 508 +  90941950 M

a score=204010.000000
s hg38.chr22_GL383582v2_alt     77542 63 +    162811 ----TCAGGCACATGGTGGTGCCGGAAGGGACACG--------TCTAGCG-TAGCTGTGTGAG----TCAAACTCCTGAG
s panTro4.chr22              40902066 63 +  49737984 ----TCAGGCACATGGTGGTGCCGGAAGGGACACG--------TCTAGCG-TAGCTGTGTGAG----TCAAACTCCTGAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445420 64 +  46535552 ----TCAGGCACATGGTGGTGCTGGAAGGGACACG--------TCTAGCGTTAGCTGTGTGGG----TCAAACTCCTGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106650911 63 - 115148730 ----TCAGGCACATGGTGGTGCCAGAAGGGACAGG--------TCTAGCG-TAGCTGTGTGGG----TCAAACTCCTGAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86954420 63 +  95678458 ----TCAGGCACATGGTGGTGCCGGAAGGGACAGG--------TCTAGCG-TAGCTGTGTGAG----TCAAACTCCTGAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87611272 63 -  96509753 ----TCAGGCACATGGTGGTGCCGGAAGGGACAGG--------TCTAGCG-TAGCTGTGTGAG----TCAAACTCCTGAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82439945 63 +  90941950 ----TCAGGCACATGGTGGTGCCGGAAGGGACAGG--------TCTAGCG-TAGCTGTGTGAG----TCAAACTCCTGAG
i papAnu2.chr10             M 508 C 0
s chlSab2.chr19              24700296 63 +  33263144 ----TCAGGCACATGGTGGTGCCAGAAGGGACAGG--------TCTAGCG-TAGCTGTGTGGG----TCAAACTCCTGAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1947578 63 -   2117846 ----TCAGGCACATGGTGCTGCCGGAAGGGACAGG--------TCTAGTG-TAGCTGTGTGGG----TCAAACTCCTGAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46085584 79 -  69331447 AAAAACTGCCAGTTGTCACAGGCGGAGGGAACGTGCCACAGACTCTAGTG-CGCCTGCGTGTGGCTCTCAGGTGCCTGGA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82812609 846 + 104043685 I

a score=123338.000000
s hg38.chr22_GL383582v2_alt     77605 35 +    162811 GTCGACACAGAAGTCCTCCCATTTGAGAGAAATGA
s panTro4.chr22              40902129 35 +  49737984 GTCGACACAGAAGTCCTCCCATTTGAGAGAAATGA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445484 35 +  46535552 GTCGACAAAGAAGTCCTCCCATTTGAGAGAAATGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106650974 35 - 115148730 GTCGACACAGAAGTCCTCCCATTTGAGAGAAATGA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86954483 35 +  95678458 GTTGACACAGAAGTCCTCCCATTTGAGAGAAATGA
i rheMac3.chr10             C 0 I 322
s macFas5.chr10              87611335 35 -  96509753 GTTGACACAGAAGTCCTCCCATTTGAGAGAAATGA
i macFas5.chr10             C 0 I 321
s papAnu2.chr10              82440008 35 +  90941950 GTTGACACAGAAGTCCTCCCATTTGAGAGAAATGA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700359 35 +  33263144 GTTGACACAGAAGTCCTCCCATTTGAGAGAAATGA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1947641 30 -   2117846 GTCAACACAGAAGTCCTCCC-----AGAGAAATGA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82813455 31 + 104043685 GTAGGAACAGAGGAC--CCTATTT-AGAGAATTA-
i mm10.chr15                I 846 C 0
s canFam3.chr10              46085663 35 -  69331447 GTAAACACAGAAGCCCTTCAGCTGAAGAGAAATAA
i canFam3.chr10             C 0 C 0

a score=479739.000000
s hg38.chr22_GL383582v2_alt     77640 137 +    162811 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCAGCAAGTGCCACAAGGTACATTTTGGTTTTTCTTTTCTTTACAACCTATTTC-----CCTTCATGCCTCAGTGA-------CGCAGG--GAGGGTGAAG
s panTro4.chr22              40902164 137 +  49737984 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCAGCAAGTGCCACAAGGTACATTTTGGTTTTTCTTTTCTTTACAACCTATTTC-----CCTTCATGCCTCAGTGA-------CGCAGG--GAGGGTGAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445519 137 +  46535552 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCAGCAAGTGCCACAAGGTAAATTTTGGTTTTTCTTTTCTTTACAACCTATTTC-----CCTTCATGCCTCAGTGA-------CGCAGG--GAGGGTGAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651009 134 - 115148730 CCGCTCAATGAATAT----TTCTGAG---ACTAGTCCCCCTGCCCCATCCTGTAGCAGCAAGTGCCACAAGGTACATTTTGGTTTTTCTTTTCTTTACAACGTATTTC-----CCTTCATGCCTCAGTGA-------GGCAGG--GAGTGTGAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86954840 137 +  95678458 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCAGTAAGTGCCACAAGGTACATTTTTGTTTTTCTTTTCTTTACAACCTATTTC-----CCCTCATGCCTCAGTGA-------GGAAGG--GAGGGTGAAG
i rheMac3.chr10             I 322 C 0
s macFas5.chr10              87611691 137 -  96509753 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCAGTAAGTGCCACAAGGTACATTTTTGTTTTTCTTTTCTTTACAACCTATTTC-----CCCTCATGCCTCAGTGA-------GGAAGG--GAGGGTGAAG
i macFas5.chr10             I 321 C 0
s papAnu2.chr10              82440043 137 +  90941950 CCCCTCAATGAATAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCACTAAGTGCCACAaggtacatttttgtttttcttttctttacaacctATTTC-----CCCTCATGCCTCAGTGA-------GGAAGG--GAGGGTGAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700394 137 +  33263144 CCCCTCAATGAGTAT----TTCTGAGACAACTAGTCCTCCTGCCCCATCCTGTAGCAGTAAGTGCCACAAGGTACATTTTTGTTTTTCTTTTCTTTACAACCTATTTC-----CCCTCATGCCTCAGTGA-------GGAAGG--GAGGGTGAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1947671 141 -   2117846 CCCCTCGATGGACACAGAATTCTGAGACAATTAGTCCTCCTGCCCCATCCTGTTGCAGCAAGTGCCACGAGTTACACTTTGGTTTTTCTTTTCTTTACAATCGATTTC-----CCTTCATGCCTCAGTGA-------GGCAGG--GAGGGTGAAG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82813486 123 + 104043685 ------------TCC----CTCAGAGACAGCTAGTACCTCTGCCC---ACTGGAGCAACAAG-GCCTCTGG--CCATGTAAG---TTCCATTCTCTTCAGCCTACTTT-----TTCTCATCCTTCAGTGACATGCAGGGCAGA--GAGGACAAAG
i mm10.chr15                C 0 I 144
s canFam3.chr10              46085698 142 -  69331447 TCTCTTAATGAACAT----TTCTGAGACAAC--GTTCCCTCTCCCCATCCTGTAGGAGCAAGTGCTTCAAGTGATGTTTTGGCTTTTTTTTCTTTCCCGTCTAGTTTCCTCAGCCCTTGCGACTCCACGA-------AGGGGGCAGGGGGTGAGA
i canFam3.chr10             C 0 C 0

a score=381259.000000
s hg38.chr22_GL383582v2_alt     77777 122 +    162811 GAGCAGCATGGAGCTCAGAGGCCTGCAGCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCACAATAATCCCACACAAACTCACAGCAAGCA
s panTro4.chr22              40902301 122 +  49737984 GAGCAGCATGGAGCTCAGAGGCCTGCAGCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGCGACCACAATAATCCCACACAAACTCACAGCAAGCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445656 119 +  46535552 GAGCAGCATGGAGCTCAGAGGCCTGCAGCTTCTAGAGACCCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCAC---AATCCCACACAAACTCATAGCAAGCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651143 118 - 115148730 GAGCAGCATGGAGCTCAGAGGCCTGCAGCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCCAAGAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86954977 116 +  95678458 GAGCAACATGGAGCTCAGAGGCCTGCAGCTTCTAGAGA-CCCAAGTCCTATCATACTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87611828 116 -  96509753 GAGCAACATGGAGCTCAGAGGCCTGCAGCTTCTAGAGA-CCCAAGTCCTATCATCTTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82440180 116 +  90941950 GAGCAACATGGAGCTCAGAGGCCTGCAGCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCATAGATGC--CTGCC--GAGGGCCGTGACCAC---AGTCCCACACAAACTCACAGCAAGCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700531 116 +  33263144 GAGCAACATGGAGCTCAGAGGCCTGCAGCTTCTAGAGA-CCCAAGTCCTATCATCCTGTTTTCACAGATGC--CTGCC--GAGGGCCGTGACCAC---AATCCCACACAAACTCACAGCAAGCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1947812 118 -   2117846 GAGCAGTGTGGAGCCTGGAGGCCCGCAGCTTTGAGAGA-CCCAAGTCTTACCATCCTGTTTTCACAGATGC--CTGCCGAGAGGGCCCTGACCAC---TGTCCCACACAAACTTGCAGCAAGCA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46085840 115 -  69331447 GAGCGGGGTGTAGC--GGAGGCCCACTGCCTCTGGGGA-CATCAGTCTGCTAATCCCGTTGCCACAAATGCCACTGCC---GCCGCCCTGACCAC---AAGCCCAGATACACTCACCAAAAGCA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82813609 144 + 104043685 I

a score=343421.000000
s hg38.chr22_GL383582v2_alt     77899 127 +    162811 CAACTCAATCACAAGAA-tttttttt---ctttttttgagacagggtctcactgtggcccaggctggaatgtagcggcacgatcatggctcactgcagcctcaacctccaggtttgatcaagtgatcctcc
s panTro4.chr22              40902423 128 +  49737984 CAACTCAATCACAAGAA-ttttttttt--ctttttttgagacagggtctcactgtggcccaggctggaatgtagcggcatgatcatggctcactgcagcctcaacctccaggtttgatcaagtgatcctcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445775 129 +  46535552 CAACTCAATCACAAGAA-ttttttttt-cttttttttgagacagggtctcactgtggtgcaggctggaatgtagcagcacgatcatggctcactgcagcctcagcctccaggtttgatcaagcgatcctcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651261 130 - 115148730 CAACTCAATCACAAGAA-ttttttttttcttttttttgagacagggtctcactgtggcccaggctggaatgcagcagcatgatcatggctcactgcagcctcaacctccaggtttgatcaagtgatcctcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86955093 122 +  95678458 AAACTCAATCACAATAAtttttttttt--------ttgagacagggtctcactgtggccca-gctggaatgcagcagcacgatcatggctcactgcagcctcaacctccaggtttgatcaagcaatcctcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87611944 121 -  96509753 AAACTCAATCACAATAA-ttttttttt--------ttgagacagggtctcactgtggccca-gctggaatgcagcagcacgatcatggctcactgcagcctcaacctccaggtttgatcaagcaatcctcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82440296 121 +  90941950 CAACTCaatcacaataa-ttttttttt--------ttgagacagggtctcactgtggccca-gctggaatgcagcagcacgatcatggctcactgcagcctcaacctccaggtttgataaagcaatcctcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700647 121 +  33263144 CAACTCAATCACAATAA-ttttttttt--------ttgagacagggtctcactgtggccca-gctggaatgcagcagcacgatcatggctcactgcagcctcaacctccagatttgatcaagcaatcctcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1947930 127 -   2117846 CAACTCAATCACAATAA-tttctttcttttcttttgggagacagggtctcactgtggcccaggctggaatgtactggcaccatcatgggtcactgcagcctcaacctccagg---gatcaactgattctcc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82813609 144 + 104043685 I
e canFam3.chr10              46085955   0 -  69331447 C

a score=63702.000000
s hg38.chr22_GL383582v2_alt     78026 17 +    162811 cagctcagcctcctgag
s panTro4.chr22              40902551 17 +  49737984 cagctcagcctcctgag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445904 17 +  46535552 cagctcagcctcctgag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651391 17 - 115148730 cagctcagcctcctgag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86955215 17 +  95678458 cagctcagcctcctgag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87612065 17 -  96509753 cagctcagcctcctgag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82440417 17 +  90941950 cagctcagcctcctgag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700768 17 +  33263144 cagctcagcctcctgag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1948057 17 -   2117846 cggcttggcctcccaag
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46085955 17 -  69331447 CAACTCAATCTCTTGAG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82813609 144 + 104043685 I

a score=118040.000000
s hg38.chr22_GL383582v2_alt     78043 40 +    162811 tagatgggactaaaggcatgtaccaccacgcacggctaat
s panTro4.chr22              40902568 40 +  49737984 tagatgggactaaaggcatgtaccaccacgcacggctaat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445921 40 +  46535552 tagatgggactaaaggcacgtaccaccatgcacggctaat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651408 40 - 115148730 tggatgggactaaaggcacgcaccaccatacacggctaat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86955232 40 +  95678458 tagatgggactaaaggcacgcaccaccatgcatggttaat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87612082 40 -  96509753 tagatgggactaaaggcacgcaccaccatgcatggttaat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82440434 40 +  90941950 tagatgggactaaaggcacgcaccatcatgcatggttaat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700785 40 +  33263144 tagatgggactaaaggcacgcaccaccatgcatggttaat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1948074 40 -   2117846 tagatgagactaaaggtgcataccaccatgcacagctaat
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82813609 144 + 104043685 I
e canFam3.chr10              46085972  0 -  69331447 C

a score=386600.000000
s hg38.chr22_GL383582v2_alt     78083 141 +    162811 ----tttttttttttttttt----aatgtagacacagggtctcactgtt--gcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccacca-tgcccagccTCGAG
s panTro4.chr22              40902608 141 +  49737984 ----tttttttttttttttt---taatgtagacacagggtctcactgtt---cccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccacca-tgcccagccTCGAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37445961 138 +  46535552 ----ttttttttttttt-------aatgtagacacagggtctcactgtg--gcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtaggagccacca-tgcccagccTCGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651448 136 - 115148730 ----ttttttttttt---------aatgtagacacagggtctcactgtt--gcccaggctggtcttgaactc---------------ctgggcttaggc-----gatccttctgcctcagcctcccaaagtgctggcattacaggtatgagccacca-tgcccagccTCGAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86955272 133 +  95678458 ----attttttaa-----------aatgtacagacagggtgtcactgtt--gcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgctggcattataggtagaagcc-cca-tacccagccTCAAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87612122 133 -  96509753 ----attttttaa-----------aatgtacagacagggtgtcactgtt--gcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgctggcattataggtagaagcc-cca-tacccagccTCAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82440474 133 +  90941950 ----attttttaa-----------aatgtacagacagggtgtcactgtt--gcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgttggcattataggTAGAAGAC-CCA-TACCCAGCCTCAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700825 133 +  33263144 ----attttttaa-----------aatgtacagacagggtctcactgtt--gcccaggctggtcttgaactc---------------ctgagcttaggt-----gatcctcctgcctcagcctcccaaagtgttggcattataggTAGACGCC-CCA-TACCCAGCCTTAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1948114 136 -   2117846 ----tttttcttaaa---------aatgtagagacagggtctcactgtt--gcccaagctggtcttgaactc---------------ctgggctcaagc-----gatcctcctgccttgacctcccaaaatgctggcattataggtatgagccacca-tgcccagccTCGGG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82813753 167 + 104043685 TTGCCTTTTTTTTTTTGGGGGGGGGGTGCTgagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgtctccc-aagtgctgggattaaaggtgcgcgccaccactgcctggctT----
i mm10.chr15                I 144 C 0
e canFam3.chr10              46085972   0 -  69331447 C

a score=2689943.000000
s hg38.chr22_GL383582v2_alt     78224 742 +    162811  
s panTro4.chr22              40902749 742 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37446099 792 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106651584 741 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86955405 743 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87612255 743 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82440607 744 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24700958 741 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1948250 762 -   2117846  
i calJac3.chrUn_GL286373    C 0 M 936
s mm10.chr15                 82813920 719 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46085972 689 -  69331447  
i canFam3.chr10             C 0 C 0

a score=249211.000000
s hg38.chr22_GL383582v2_alt     78966 71 +    162811 ---GAGAGGACA-----------GTGCAGAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACATGGAAAAGGAAAGAAAAGG
s panTro4.chr22              40903491 71 +  49737984 ---GAGAGGACA-----------GTGCAGAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACATGGAAAAGGAAAGAAAAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37446891 71 +  46535552 ---GAGAGGACA-----------GTGCAGACATCAGGGAGGGCAAA-GG-GAGAACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106652325 71 - 115148730 ---GAGAGGACA-----------GTGCAGAAATCAGGGAGGGCAAA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86956148 71 +  95678458 ---GAGAGGACA-----------GTGCGGAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87612998 71 -  96509753 ---GAGAGGACA-----------GTGCGGAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82441351 71 +  90941950 ---gagaggaca-----------gtgcggaaatcagggagggcaga-gg-gaggacaggagTGgcacacagaaaaggaaagaaaagg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24701699 71 +  33263144 ---GAGAGGACA-----------GTGTGGAAATCAGGGAGGGCAGA-GG-GAGGACAGGAGTGGCACACGGAAAAGGAAAGAAAAGG
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82814639 83 + 104043685 ---GACAGAACAGGAAATACAGTGTGTGGGAACCAGGAAGGGTAGACGA-AAGGACAGGAATGGCACATGGAAAAGGAAATAAAAAG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46086661 75 -  69331447 gacagaagaaca-----------gtgcaggggtcagggagggcaga-ggcgaggagaggaacggcacatggaaaaggaaagaaaaag
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1949012 936 -   2117846 M

a score=862918.000000
s hg38.chr22_GL383582v2_alt     79037 223 +    162811 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGATCCTGTGACC---ACTCCCCGCCCTTCCCCAGAAATAATTTTTAAAGAAAAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
s panTro4.chr22              40903562 223 +  49737984 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGCTCCTGTGACC---ACTCCCTGCCCTTCCCCAGAAATAATTTTTAAAGAAAAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37446962 220 +  46535552 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGATCCTGTGGCC------CCCCGCTCTTCCCCGGAAATAATTTTTAAAGAAAAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106652396 226 - 115148730 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGATCCTGTGACCCCTACCCCCCACCCTTCCCTGGAAATAATTTTTAAAGAAAAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86956219 216 +  95678458 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGATCCTGTGACC----------ACCCCTCCCTGGAAATAATTTTTAAAGAAGAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87613069 216 -  96509753 CAGAGTCAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGATCCTGTGACC----------ACCCCTCCCTGGAAATAATTTTTAAAGAAGAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82441422 216 +  90941950 cagagtcAGTCCTGACCGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATgcaaattaagtaaaaataaagagaata---taaGATCCTGTGACC----------ACCCCTccctggaaataatttttaaagaaaagcataagCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24701770 216 +  33263144 CAGAGTCAGTCCTGACCGACAAATAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGGGAGTTCTAAA----AATAACATGCAAATTAAGTAAAAATAAAGAGAATA---TAAGATCCTGTGACC----------ACCCCTCCCTGGAAATAATTTTTAAAGAAAAGCATAAGCAAGCATCTTTCAGGAGCATTTTGAGGGCAGACCTCTCTGGA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1949948 215 -   2117846 CAGAGTCAGTCCTGA-TGACAAACAGGAGACATTCAGACAGGGTTTTCTGAGGCAAAATGTGACCCTTAAAAAGGAGAGTTCTAAA----AATAACATGCAAATTAAATAAAAATAAAGAGAATA---TAAAATCCTGTGACG----------GCCCCTCCCCAGAAATAATTATTTTAAAAAAGCATAAGCAAGCATCCTTCAGGAGCATTTTGAGGACAGACCTCTCTGGA
i calJac3.chrUn_GL286373    M 936 C 0
s mm10.chr15                 82814722 175 + 104043685 CAGAGTCAGTACTGAATGACAAACAGGAGGCACCCAGACTGGGCTTGCTGAGGTAAAACATGA---TTA-----------------------------------TAAGTAAAAATAAAGAGAATACTGTCTGATCCTAAGACC-------------CATCTCTGAGAATTATTCTTAAAAGCAAGCATA-------ATCTGTCAGGAACATTCTGAGGACAGTCCTCTAAAGA
i mm10.chr15                C 0 C 0
s canFam3.chr10              46086736 214 -  69331447 -agagTCAGTATTGAATGACAAACAGGAGATATTCAGACAGGGCTTTCTGAGGCAAAATGTGACCATTAAAAAAGAGAAGTTTAAAAAATAAAAACATGTAAATTAACTA-----AAAGAGAATACTGTAAGATCCTGTGGTC-------------CATCTCTGAAAATAATTTCCAAAGAAAAGCATAAGCAAACATCTCTCCAAAGTGCTGTGAGGGCAGACCTGTCGGGA
i canFam3.chr10             C 0 I 31

a score=97560.000000
s hg38.chr22_GL383582v2_alt     79260 30 +    162811 CAACCTCCTTCTAGTACTTT-CGGCCCTACT------
s panTro4.chr22              40903785 30 +  49737984 CAACCTCCTTCTAGTACTTT-CGGCCCTACT------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37447182 30 +  46535552 CAACCTCCTTCTAGTACTTT-CGGCCCTACT------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106652622 30 - 115148730 CAACCTCCTTCTAGTACTTT-CGGCCCTACT------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86956435 30 +  95678458 CAACCTCCTCCTAGTACTTT-CGGCCCTACT------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87613285 30 -  96509753 CAACCTCCTCCTAGTACTTT-CGGCCCTACT------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82441638 30 +  90941950 CAACCTCCTCCTAGTACTTT-CGGCCCTACT------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24701986 30 +  33263144 CAACCTCCTCCTAGTACTTT-CAGCCCTACT------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1950163 36 -   2117846 CAACCTCCTCCTAGTACTTT-GGGCCCTACCTACTAG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82814897 29 + 104043685 TGACTCCTT--TAGTATTTTCCAGCCCTTCT------
i mm10.chr15                C 0 C 0
e canFam3.chr10              46086950 31 -  69331447 I

a score=3141178.000000
s hg38.chr22_GL383582v2_alt     79290 913 +    162811  
s panTro4.chr22              40903815 916 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37447212 916 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106652652 917 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86956465 901 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87613315 901 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82441668 911 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24702016 911 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1950199 916 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82814926 834 + 104043685  
i mm10.chr15                C 0 I 1272
s canFam3.chr10              46086981 849 -  69331447  
i canFam3.chr10             I 31 C 0

a score=614385.000000
s hg38.chr22_GL383582v2_alt     80203 191 +    162811 ctaataggaaaacattagagaca-acccaagtaagctatga-taccttaacatgatgg-a-tatcggtcacttaaaa-attaacatttgaaaagagttaatggtatg-gaaaacacccatgaaacaaaactgcttgaaaaaaccaggatgtacaaatgtataaat---gtgctaattttattaaaaTGT-TTCTACGCATT
s panTro4.chr22              40904731 191 +  49737984 ctaataggaaaacattagagaca-acccaagtaagctatga-taccttaacatgatgg-a-tatcagtcacttaaaa-attaacattttaaaagagttaatggtatg-gaaaacacccatgaaacaaaactgcttgaaaaaaccaggatgtacaaatgtataaat---gtgctaattttattaaaaTGT-TTCTACGCATT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448128 191 +  46535552 ctaataggaaaacattagagaca-acccaagtaagctatga-taccttaacatgatgg-a-tattggtcacttaaaa-attaacattttaaaagagttaatggtatg-gaaaacactcatgaaacaaaactgcttgaaaaaaccaggatgtacaaatgtataaat---gtgctaattttattaaaaTGT-TTCTATCCATT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106653569 191 - 115148730 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTAGGA-TACCTTAACATGATGG-A-TATCGGTCACTTAAAA-ATTAATATTTTAAAAGAGTTAATGGTATG-GAAAACACTCATGAAACAAAACTGCTTGAAAAAACCAGGATGTACAAATGTATAAAT---GTGCTAATTTTATTAAAATGT-TTCTATGCATT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86957366 192 +  95678458 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTACAATtaccttaacatgatgg-a-tatcggtcacttaaaa-attaacattttaaaagagttaatggtatg-gaaaatactcatgaaacaaaactgcttgaaaaaaccaggatatacaaatgtataaat---gtgctaattttattaaaatgt-ttctatgcatt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87614216 192 -  96509753 ctaataggaaaacattagagaca-acccaagtaagctacaattaccttaacatgatgg-a-tatcggtcacttaaaa-attaacattttaaaagagttaatggtatg-gaaaatactcatgaaacaaaactgcttgaaaaaaccaggatatacaaatgtataaat---gtgctaattttattaaaatgt-ttctatgcatt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82442579 191 +  90941950 CTAATAGGAAAACATTAGAGACA-ACCCAAGTAAGCTACAA-TACCTTAACATGATGG-A-TATCGGTcacttaaaa-attaacattttaaaagagttaATGGTATG-GAAAATACTCATGAAACAAAACTGCTTGAAAAAACCAGGatatacaaatgtataaat---gtgctaattttattaaaatgt-ttctatgcatt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24702927 191 +  33263144 CTAATAGGAAAACATTAGAGACA-ACCCaagtaagctataa-taccttaacatgatgg-a-tatcggtcacttaaaa-attaacattttaaaagagttaatggtatg-gaaaacactcatgaaacaaaactgcttgaaaaaaccaggatatacaaatgtataaat---gtgctaattttattaaaatgt-ttctatgcatt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1951115 158 -   2117846 CTA--AGGAAAACATTAGAGACA-ACCCAAGTGAG-TATGA-TACCTTAACATGATGGAA-CATCTGTCATTTAAA---------------------------------AAAACATTCATGAAACAAAACTGCTTGAAAAAACCAGGATATACAAATGTATAAAT---GTACTAATTTTATTAAAATGT-GTATATACCTT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46087830 191 -  69331447 CTG------AACCATCAGAGACATCCCCaaataaactatgg-taccgcaacatgatgg-agtatcagtcacttaaaattttaatgtttcaaaacagttaatgttatgaggaaactctgatgacacaaaatggcttg--aaaaccaggatatgtaaacatcgaagtacaatcctaattgtatcaaaatgtattatatgcatt
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82815760 1272 + 104043685 I

a score=408702.000000
s hg38.chr22_GL383582v2_alt     80394 133 +    162811 ---AAAAAAAGACTTGGggctgggtaccatggctcacacctgtaatcccagcactttgggaggccgaggcagaaagatcacttgaatccaagagtcaagaccagcttgcgcaacacagtgagatcctgtcactatt
s panTro4.chr22              40904922 133 +  49737984 ---AAAAAAAGACTTGGggctgggtaccatggctcacacctgtaatcccagcactttgggaggccgaggcagaaagatcacttgaatccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448319 133 +  46535552 ---AAAAAAAGACTTGGggctgggtaccatggctcacacctgtaatcccagcactttgggaggccgaggcacaaagatcacttgagtccaagagtcaagaccagcttgggcaacacagtgagatccagtcactatt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106653760 133 - 115148730 ---AAAAAAAGACTTGGggctgggtaccatggctcacacctgtaatcccagcactttgggaggccgaggcagaaagatcacttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgccactatt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86957558 133 +  95678458 ---aaaaaaagacttgaggctgggcatggtggctcatacctataatcccagcactttgggaggccaaggcagaaagatcacttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87614408 133 -  96509753 ---aaaaaaagacttgaggctgggcatggtggctcatacctataatcccagcactttgggaggccaaggcagaaagatcacttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt
i macFas5.chr10             C 0 I 489
s papAnu2.chr10              82442770 133 +  90941950 ---aaaaaaagactcgaggctgggcatggtggctcatacctataatcccagcactttgggaggccaaggcagaaagatcacttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt
i papAnu2.chr10             C 0 I 467
s chlSab2.chr19              24703118 133 +  33263144 ---aaaaaaagactcgaggctgggcatggtggctcatacctataatcccagcactttgggaggccaaggcagaaagatcacttgagtccaagagtcaagaccagcttgggcaacacagtgagatcctgtcactatt
i chlSab2.chr19             C 0 I 1
s calJac3.chrUn_GL286373      1951273 136 -   2117846 TAAAAAAACAGACTAGGggctgggtatggtggctcacacctgtaatcctagccctttggaagcgtgaggcagaaggatcacttgagtctaagagtcaagaccagcttgggcaacacagtgagaccctgttactatt
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82815760 1272 + 104043685 I
e canFam3.chr10              46088021   0 -  69331447 C

a score=12212.000000
s hg38.chr22_GL383582v2_alt     80527 5 +    162811 aaaaa
s panTro4.chr22              40905055 5 +  49737984 aaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448452 5 +  46535552 aaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106653893 5 - 115148730 aaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86957691 5 +  95678458 aaaaa
i rheMac3.chr10             C 0 I 738
s macFas5.chr10              87615030 5 -  96509753 aaaaa
i macFas5.chr10             I 489 I 17
s papAnu2.chr10              82443370 5 +  90941950 aaaaa
i papAnu2.chr10             I 467 I 2
s chlSab2.chr19              24703252 4 +  33263144 aaaa-
i chlSab2.chr19             I 1 I 2
s calJac3.chrUn_GL286373      1951409 5 -   2117846 aaaaa
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82815760 1272 + 104043685 I
e canFam3.chr10              46088021 0 -  69331447 C

a score=11282.000000
s hg38.chr22_GL383582v2_alt     80532 12 +    162811 aaaaaaaaaaaa
s panTro4.chr22              40905060 10 +  49737984 aaaaaaaaaa--
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448457 10 +  46535552 aaaaaacaaa--
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106653898 12 - 115148730 aaaaaaaaaaaa
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87615052 10 -  96509753 aaaaaaaaaa--
i macFas5.chr10             I 17 C 0
s papAnu2.chr10              82443377 10 +  90941950 aaaaaaaaaa--
i papAnu2.chr10             I 2 C 0
s chlSab2.chr19              24703258 10 +  33263144 aaaaaaaaaa--
i chlSab2.chr19             I 2 I 641
s calJac3.chrUn_GL286373      1951414  2 -   2117846 --------ag--
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82815760 1272 + 104043685 I
e canFam3.chr10              46088021  0 -  69331447 C
e rheMac3.chr10              86957696 738 +  95678458 I

a score=159966.000000
s hg38.chr22_GL383582v2_alt     80544 162 +    162811 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgagaagactgcttgagcccaggagttc-agactgcagtaagctactatcacatc--actgcactatagcctaggcaa------gcaaaactgtctt--------aaaaaaaaaaaaaa
s panTro4.chr22              40905070 162 +  49737984 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgagaagactgcttgagcccaggagttc-agactgcagtaacctactatcacatc--actgcactatagcctaggcaa------gcaaaactgtctt--------aaaaaaaaaaaaaa
i panTro4.chr22             C 0 I 7
s ponAbe2.chr22              37448467 170 +  46535552 aattgaaaggctgggtgtgatggcacttgcctatagtctcagctacttgggaggctgaggtgggaagactgcttgagcccaggagttc-agactgcagtaagctactatcacatc--actgtactatagcctaggcaa------gcaaaactgtcttttttttaaaaaaaaaaaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106653910 162 - 115148730 tactgaaaggctgggtgtgatggcacttgcctatagtcccagctacttgggaggctgaggtgggaagactgcttgagcccaggagttc-agactgcagtaagctactatcacatc--actgcactatagcctaggcaa------gcaagactgtctt--------aaaaaaaaaaaaaa
i nomLeu3.chr7b             C 0 I 9
s macFas5.chr10              87615062 134 -  96509753 -----aaaaGCT-ggcgtagtggctcacacttgtaatcccagcactttggaaggccgaggtgggcggatcac--aagatcaggaaatcaagac---------------------------------cagcctggccaacatggtgaaaccctgtctctatt----aaaaatacaaaaat
i macFas5.chr10             C 0 I 35
s papAnu2.chr10              82443387 134 +  90941950 -----aaaagct-ggcatggtggctcacacttgtaatcccagcactttggaaggccaaggtgggcggatcac--aaggtcaggaaatcaagac---------------------------------cagcctggccaacatggtgaaaccctgtctctatt----aaaaatacaaaaat
i papAnu2.chr10             C 0 I 35
s calJac3.chrUn_GL286373      1951416 164 -   2117846 -actgaaagactgggtgtgatggcacttgtctatattcccagctacttgggaggctgaagtgggaagactgcttgaactcaggagttcaaggctgcagtgagctatgatcacatcatactgcactatagcctgggcaa------gcaagactgttttt-------aaaaaaaaaaaaa-
i calJac3.chrUn_GL286373    C 0 I 170
e mm10.chr15                 82815760 1272 + 104043685 I
e canFam3.chr10              46088021   0 -  69331447 C
e chlSab2.chr19              24703268 641 +  33263144 I
e rheMac3.chr10              86957696 738 +  95678458 I

a score=266316.000000
s hg38.chr22_GL383582v2_alt     80706 112 +    162811 ctacttgggaggctgaggcaggagaatcacttgaaccag--agagtcggaggttgcagtgagccgagatcacaccactgcactccagcctggtgacagagcgagactccgtctc
s panTro4.chr22              40905239 112 +  49737984 ctacttgggaggctgaggcagcagaatcacttgaaccag--agagtcggaggttgcagtgagccgagatcacaccactgcactccagcctggtgacagagcgagactccatctc
i panTro4.chr22             I 7 C 0
s ponAbe2.chr22              37448637 114 +  46535552 ctactcgggaggctgaggcaggagaatcacttgaaccagacagagtcggaggttgcagtgagccgagatcacaccactgcactccagcctggtgacagagcgaggctccgtctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106654081 112 - 115148730 ctactcaggaggctgaggcaggagaatcatttgaaccag--agagtcggaggttgcagtgagccgagatcacaccactgcactccagcctggtgacagagcgagactccttttc
i nomLeu3.chr7b             I 9 C 0
s macFas5.chr10              87615231 112 -  96509753 ctactcgggaggctgaggcaggagaatcacttgaaccag--ggagtcagaggttgcagtgagctgagatcacaccactgcactctagcctggtgacatagcgagactccgtctc
i macFas5.chr10             I 35 C 0
s papAnu2.chr10              82443556 112 +  90941950 ctactcgggaggctgaggcaggagaatcacttgaaccag--ggagtcagaggttgcagtgagctgagatcacaccactgcactctagcctggtgacagagcgagactccgtctc
i papAnu2.chr10             I 35 I 4
s chlSab2.chr19              24703909 112 +  33263144 ctactcgggaggctgaggcaggagaatcacttgaaccag--ggagtcagaggttgcagtgagctaagatcacaccactgcactctagcctggtgacagagcgagactccgtctc
i chlSab2.chr19             I 641 I 5
s calJac3.chrUn_GL286373      1951750 112 -   2117846 ctacttgggaggctgaggcaggaaaatcgcttgaaccag--ggaatcagaggttgcagtgagttaagatggcaccacggcactccagcctggcaacagagcaagacttcgtttc
i calJac3.chrUn_GL286373    I 170 C 0
e mm10.chr15                 82815760 1272 + 104043685 I
e canFam3.chr10              46088021   0 -  69331447 C
e rheMac3.chr10              86957696 738 +  95678458 I

a score=34472.000000
s hg38.chr22_GL383582v2_alt     80818 12 +    162811 aaaaaaaaaaaa
s panTro4.chr22              40905351 12 +  49737984 aaaaaaaaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448751 12 +  46535552 aaaaaaaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106654193 12 - 115148730 aaaaaaaaaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86958434 12 +  95678458 aaaaaaaaaaaa
i rheMac3.chr10             I 738 C 0
s macFas5.chr10              87615343  7 -  96509753 -----aaaaaaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82443672 12 +  90941950 aaaaaaaaaaaa
i papAnu2.chr10             I 4 C 0
s chlSab2.chr19              24704026 12 +  33263144 aaaaaaaaaaaa
i chlSab2.chr19             I 5 C 0
s calJac3.chrUn_GL286373      1951862 12 -   2117846 aaaaaaaaaaaa
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82815760 1272 + 104043685 I
e canFam3.chr10              46088021  0 -  69331447 C

a score=687939.000000
s hg38.chr22_GL383582v2_alt     80830 208 +    162811 aaaaaaaa-----------GACTGAAAGGAAATCTATGAATATGTAACAATAATTCTCTTTGGGTAAGAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATATTCCCACGAT--------------------ATCACCAATAAATGCTATTTTAAAAATCCTTGATTCTAGGCTAACCCCATTTCTCAGGCTCAAGCCAAAGCCTCCTTGTAAAAACACTTTAAAATCTAGACGCGTA
s panTro4.chr22              40905363 213 +  49737984 aaaaaaaa------aaaaaGACTGAAAGGAAATCTATGAATATGTAACAATAATTCTCTTTGGGTAAGAAGA-T-ACTGCTGATTTAAATTTTATCTTTTCTATGTTCCCACGAT--------------------ATCACCAATAAATGCTATTTTAAAAATCCTTGATTCTAGGCTAACCCCATTTCTCAGGCTCAAGCCAAAGCCTCCTTGTAAAAACACTTTAAAATCTAGACGCGTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448763 210 +  46535552 aaaaaaaa---------aaGACTGAAAGGAAATCTACGAATATATAACAATAATTCTCTTTGGGTAAGAAGA-T-GGAGCTGATTTAAATTTTATCTTTTCTATATTCCCATGAT--------------------ATCACCAATAAATGCTATTTTAAAAATCGTTGATTCTAGGCTAACCCCATTTCTCAGGCTCAAGCCAAAGCCTCCTTGTAAAAACACTTTAAAATCTAGACACGTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106654205 219 - 115148730 aaaaaaaaaaaaaaaaaaaGACTGAAAGGAAATCTAGGAATATGTAACAATAATTCTCTTTGGGTAAGAAGA-T-ACAGCTGATTTAAATTTTATCTTTTCTATATTCCCATGAT--------------------ATCACCAATAAATGCTATTTTAAAAATCCTTGATTCTAGGCTAACCCCATTTCTCAGGCTCAAGCCAAAGCCTCCCTGTAAAAACACTTTAAAATCTAGACGCGTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86958446 208 +  95678458 aaaaaaaa-----------GACCGAAAGGAAATCTACGAATATACAACAATAATTCTCTTTGGGTAATAAGA-T-ACAGCTGATTTAAATTTGATCTTTTCTATATTCCCATGAT--------------------ACCACCAATAAATGCTATTTTAAAAATCCCTGATTCTAGGCTAACCCCATTTCCCAGGCTCAAGCCAAAGCTTCCTTGTAAAAACACTTTAAAATCTGGAAGCGCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87615350 208 -  96509753 aaaaaaaa-----------gaccgaaaggaaatctacgaatatacaacaataattctctttgggtaataaga-t-acagctgatttaaatttgatcttttctatatTCCCATGAT--------------------ATCACCAATAAATGCTATTTTAAAAATCCCTGATTCTAGGCTAACCCCATTTCCCAGGCTCAAGCCAAAGCTTCCTTGTAAAAACACTTTAAAATCTGGAAGCGCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82443684 208 +  90941950 aaaaaaaa-----------gaccgaaAGGAAATCTACGAATATACAACAATAATTCTCTTTTGGTAATAAGA-T-ACAGCTGATTTAAATTTGATCTTTTCTATATTCCCATGAT--------------------ATCAccaataaatgctattttaaaaatccctgatTCTAGGCTAACcccatttcccaggctcaagccaaaGCTTCCTtgtaaaaacactttaaaatctgGAAGTGCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24704038 209 +  33263144 aaaaaaaa-----------gaccgaaaggaaatctacgaatatacaacaataattctctttgggtaataaga-taatagctgatttaaatttgatcttttctatatTCCCATGAT--------------------ATCACCAATAAATGCTATTTTAAAAATCTCTGATTCTAGGCTAACCCCATTTCCCAGGCTCAAGCCAAAGCTTCCTTGTAAAAACACTTTAAAATCTGGAAGCGCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1951874 216 -   2117846 aaaaaaaa---aaaaaaaaGACTGAAAGGAAATCTATGAATATATAACAATCATTCTCTTTGGGTAATAAGA-T-ACAGCTGATTTAAATTTTATCTTCTCTATAGTCCCATGAT--------------------ATCACCAATAAATGCTATTTTAAACAACCTTGATTCTAGGCTAACCTCATTTCTCAGGCTCAAGCCAAAGCCTCCTTGTAAAAACACTTGAAAATCCGGAATCGTC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46088021 225 -  69331447 aaaaccaa-----------gac--aaaggaaacttaccaaaatctaacatcagttctctttggatagcaagact-agaggtgattttatttttattttttatgtatttccACAATTATATTAATAATCAGAAACAATCTCCAATAAACGTTGTTTTTAAAATCCCTGATTCTAGGCTAAGCCCATTCCACAGGCCCAAGCCTAAGCTTCCTTGAGCCAACACCAC-AAATCCGGTGGCAC-
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82815760 1272 + 104043685 I

a score=2759770.000000
s hg38.chr22_GL383582v2_alt     81038 729 +    162811  
s panTro4.chr22              40905576 729 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37448973 729 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106654424 729 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86958654 713 +  95678458  
i rheMac3.chr10             C 0 I 22
s macFas5.chr10              87615558 713 -  96509753  
i macFas5.chr10             C 0 I 15
s papAnu2.chr10              82443892 713 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24704247 711 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1952090 731 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82817032 711 + 104043685  
i mm10.chr15                I 1272 C 0
s canFam3.chr10              46088246 702 -  69331447  
i canFam3.chr10             C 0 C 0

a score=11574.000000
s hg38.chr22_GL383582v2_alt     81767 3 +    162811 CCC
s panTro4.chr22              40906305 3 +  49737984 CCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37449702 3 +  46535552 CCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106655153 3 - 115148730 CCC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87616286 3 -  96509753 CAC
i macFas5.chr10             I 15 I 4
s papAnu2.chr10              82444605 3 +  90941950 CCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24704958 3 +  33263144 CCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1952821 3 -   2117846 CCC
i calJac3.chrUn_GL286373    C 0 I 2
s mm10.chr15                 82817743 3 + 104043685 CCC
i mm10.chr15                C 0 C 0
s canFam3.chr10              46088948 3 -  69331447 CCC
i canFam3.chr10             C 0 C 0
e rheMac3.chr10              86959367 22 +  95678458 I

a score=3568936.000000
s hg38.chr22_GL383582v2_alt     81770  976 +    162811  
s panTro4.chr22              40906308  976 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37449705  972 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106655156  975 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86959389  966 +  95678458  
i rheMac3.chr10             I 22 C 0
s macFas5.chr10              87616293  966 -  96509753  
i macFas5.chr10             I 4 C 0
s papAnu2.chr10              82444608  966 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24704961  977 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1952826  956 -   2117846  
i calJac3.chrUn_GL286373    I 2 C 0
s mm10.chr15                 82817746 1043 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46088951  977 -  69331447  
i canFam3.chr10             C 0 I 60

a score=69996.000000
s hg38.chr22_GL383582v2_alt     82746 21 +    162811 ----------CCCCCAGAAGAGAAGGCCACT
s panTro4.chr22              40907284 21 +  49737984 ----------CCCCCAGAAGAGAAGGCCACT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37450677 22 +  46535552 C---------CCCCCAGAAGAGAAGGCCACT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106656131 22 - 115148730 C---------GCCCCAGAAGAGAAGGCCACT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86960355 22 +  95678458 C---------CCCCTAGAAGAGAAGACCACT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87617259 22 -  96509753 C---------CCCCTAGAAGAGAAGACCACT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82445574 22 +  90941950 C---------CCCCTAGAAGAGAAGACcact
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24705938 22 +  33263144 C---------CCCCTAGAAGAGAAGACCACT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1953782 22 -   2117846 C---------ACCCTGGAAGAGAAGGCCACT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82818789 31 + 104043685 CTCCATACCAACCCTCGGAGAGAATGCTACT
i mm10.chr15                C 0 C 0
e canFam3.chr10              46089928 60 -  69331447 I

a score=2797433.000000
s hg38.chr22_GL383582v2_alt     82767  910 +    162811  
s panTro4.chr22              40907305  904 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37450699  902 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106656153  913 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86960377  902 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87617281  902 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82445596  907 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24705960  878 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1953804  893 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82818820  736 + 104043685  
i mm10.chr15                C 0 I 781
s canFam3.chr10              46089988 1246 -  69331447  
i canFam3.chr10             I 60 C 0

a score=9000.000000
s hg38.chr22_GL383582v2_alt     83677 2 +    162811 GG
s panTro4.chr22              40908209 2 +  49737984 GG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37451601 2 +  46535552 GG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106657066 2 - 115148730 GG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86961279 2 +  95678458 GG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87618183 2 -  96509753 GG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82446503 2 +  90941950 GG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24706838 2 +  33263144 GG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1954697 2 -   2117846 GG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46091234 2 -  69331447 GG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82819556 781 + 104043685 I

a score=387929.000000
s hg38.chr22_GL383582v2_alt     83679 95 +    162811 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGCTCTTTACTCCATAAGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATGATT
s panTro4.chr22              40908211 94 +  49737984 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGCTCTTTACTCCAC-AGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATGATT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37451603 94 +  46535552 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGCTCTTTACTCCAT-AGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTCTTATGATT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106657068 94 - 115148730 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGCTCTTTACTCCAT-AGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATGATT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86961281 94 +  95678458 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGTTTCTTACTCCAT-AGGGAAGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATGATT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87618185 94 -  96509753 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGTTTCTTACTCCAT-AGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATGATT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82446505 94 +  90941950 TTGACAGCAAGGCAGAGATGAAAATGTTAAACTGTTTCTTACTCCAT-AGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATGATT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24706840 94 +  33263144 CTGACAGCAAGGCAGAGATGAAAATGTTAAACTGTTTCTTACTCCAT-AGGGAGGTTAGGGATTC-TCAAAC-CAAGGACTTATTTTTGTTATCATT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1954699 94 -   2117846 TTGACAGCAAGGCAGAGCTGAAAATGTTATACTGCTCCTTACTCCAT-AGGGAGATTAGGGATTC-TTAAAT-CAAGGACATATTTTAGTTATGATT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82820337 95 + 104043685 CTGGCAGCAAGGCAAAGATGAAAATGTTATACTCTTTTTTACTCCAC-CATTAGATTAGAGCCTCTTCAATC-CAGAGACTGATCTTGATTATGAAT
i mm10.chr15                I 781 I 192
s canFam3.chr10              46091236 95 -  69331447 TTAACAGCAAAGCAAAGATGAAAGTGTTAATCTGTTCCTTACTCCAT-GCAGACATTAGGGCCTC-TCAAACTCAGGGACTTATTTTTATTATAATT
i canFam3.chr10             C 0 C 0

a score=1106981.000000
s hg38.chr22_GL383582v2_alt     83774 323 +    162811 AGAAAGAAAAGTCCATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATACACAGAGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCG--CAATGACC---AAGACATGGTCATCTTGTGAAACTGCCTC--T--GGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGAGGCCGACAGCCCTACCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCTGGACACGCGGCCAC
s panTro4.chr22              40908305 323 +  49737984 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAGAGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCG--CAATGACC---AAGACATGGTCATCTTGTGAAACTGCCTC--T--GGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGAGGCCGACAGCCCTATCCTCACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCTGTACACACGGCCAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37451697 321 +  46535552 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATAC--AGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATATAAGCGTCCATCCCCACAGAGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCG--CAATGACC---AAGACATGGTCATCTTGTGAAACTGCCTC--T--GGGTCCCAGGTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGAGGCCAACAGCCCTATCCTCACCCC--TCCCAACCCAGACC-CCTCTGTCTTGCTGGATACTCGGCCAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106657162 323 - 115148730 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATAGAGAGAG-CAATTTCCAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCTCCACAGGGCAGTGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCG--CAATGACC---AACACATGGTCATCTTGTGAAACTGCCTC--T--GGTCCCCAGGTCTCCA--CATGAAGGAACAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGAGGCCGACAGCCCTATCCTTACTCC--TCCCAACCCAGACC-CCTCTGTCTTGCTGGACACTCGGCCAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86961375 318 +  95678458 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAGAGAGCCAATTTCTAAGAAGACTGTGTGGAAT-TATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCA--CAATGACC---AAGACATGGTCATCTCGTGAAA---CCTC--T--GG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGAGGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCTGGACACTTGGCTAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87618279 318 -  96509753 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAGAGAGCCAATTTCTAAGAAGACTGTGTGGAAT-TATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCA--CAATGACC---AAGACATGGTCATCTCGTGAAA---CCTC--T--GG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGAGGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCTGGACACTTGGCTAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82446599 318 +  90941950 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAGAGAGCCAATTTCTAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCA--CAATGACC---AAGACATGGTCATCTCGTGAaa---cctc--t--gg-tcccagctctcCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCGGCAAAGCCAGAGGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCTGGACACTTGGCCAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24706934 324 +  33263144 AGAAAGAAAAGTCAATCAATAAAC-TTG--TTTCCTGGATACAAAGTTACATCATATACAGAGAGCCAATTTCTAAGAAGACTGTGTGGAAT-AATACAAGCATCCATCCCCACAGAGCAGTGCATAACTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCA--CAATGACCAAGAAGACATGGTCATCTCGTGAAACTGCCTC--T--GG-TCCCAGCTCTCCA--CATGAAGGAGCAAAGTGCACAGCAGCAGAGGCAGCAAAGCCAGAGGCCGACAACTTTAGCCTCACTCC--TCCCAACCCAGAAC-C--CTGTCTCGCTGGACACTTGGCCAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1954793 323 -   2117846 AGAAAGAAAAGTCAATCAATAAACGTTG--TTTCCTGGATACAAAGTTACAACATACACAGATAG-TAATTTCCAAGAAGACTGTGTGGAAT-AATACAAACATCCATCCCCACAGAGCAGAGCAGGCCTCTGGGTCACTGTGACTTGGGTCATCAAAAAGACCA--CAATGACC---AAGACATGGTCATCTTGTGAAGCTGCCTC--T--GG-TCCCAGCTCTCCA--CATGAAGGAGCAGAGTGCACAGCAGCAGAGGCAGCAAAGCCAGAGGCCAACAGCCCTGCCCTTACTCC--TCTGAACCCAGACC-CCTCTGTCTCGCTGGACAGTCGGCCAC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82820624 269 + 104043685 acaaacaaaAATCAGTCAGTGAAC-ATGCCTTCCTTAAATATAAG---ACATATTACACAGAATA-GAACTCTTGAGACCA-----TGGAAT-AAGCACAAAATCTATCCCTGCAGAGCAGTG---GACTCTAGGTCTTTGTAACTTGGATCATCAAAAAGCCTG--AATTGTCT---G---------CGGCTTGTAAAGCTGCATC--TTCGA-TACCATCTCTGCACTCCTGAA-------------------------CTGCAGAGCCAGAG--CAGGAGTCATACCGTACCTAC--ACACAAGCC---------CTCTCTTGCTGGAAACTTG----C
i mm10.chr15                I 192 C 0
s canFam3.chr10              46091331 324 -  69331447 -----AGGAAGCCAATCCATGAAC-GCC--TTTCCTGGACACACAGATCCATCATGTATAGAACA-GAATTCCCGAGAAGACACTGTGGGATAAATACAAGCATCCATCCCCA-GGAGCAGTACAGGCTTCTGGGTCACTGTGACTCAGGTCATCAAAAAGATCGATAAATGTCC---AAGACACAGTCGTCTTGTGATGCTGCTTCCTT--GG-TCCCAGATCTCCA--CACCGAGCAGCAGAGCATACACTAGCTGGGGCAGGAAACTCAAGGAGCCAAGGCCCCCTCCCTGGGCCGACCCCAACCCAGACAGCCTCTCTCTCACTGAATACTTGGCCAC
i canFam3.chr10             C 0 I 208

a score=394581.000000
s hg38.chr22_GL383582v2_alt     84097 109 +    162811 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGACACCATTTACTCACAAGTCCTCAGCTAATAA
s panTro4.chr22              40908628 109 +  49737984 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTAATAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452018 109 +  46535552 CAACTTCTGTTAAAGAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTAATAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106657485 109 - 115148730 CAACTTCTGTTAAATAGACATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGTCCTCAGCTAATGA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86961693 109 +  95678458 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTAATaa
i rheMac3.chr10             C 0 I 12
s macFas5.chr10              87618597 109 -  96509753 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTaataa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82446917 109 +  90941950 CAACTTCTGTTAAATAGAGATGCTACCAGCTTAAC-----TAGGCAGACTAC-CAAGATG--------GGC----------cccaaaacagaaaa-tgacagaTACCATTTACTCACAAGCCCTcagctaacaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24707258 109 +  33263144 CAACTTCTGTTAAATAGAGATGCTACCGGCTTAAC-----TAGGCAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTaataa
i chlSab2.chr19             C 0 I 11
s calJac3.chrUn_GL286373      1955116 107 -   2117846 CAACT--TGTTAAATAGAGATGCTATCGGCTTAAC-----TAGGTAGGCTAC-CAAGATG--------GGC----------CCCAAAACAGAAAA-TGACAGATACCATTTACTCACAAGCCCTCAGCTAATAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82820893 126 + 104043685 CTAGGTTTGTTAAATAGACAT--TATCGGATTAATGGGGGTAGGGATGGGGC-TGAGGTGTTTGGGTTGGCACATGACAAGTCTGGAACAGAAAGTTAACAGGCATCATTT--TTACTTACCCTCAACGAA---
i mm10.chr15                C 0 C 0
s canFam3.chr10              46091863 106 -  69331447 CAACTTCTGCCAAAT--ACACGTTACCAACTTACC-----TAAGCAGGCTACACAAGACA--------GAC----------TC--AAACAGAGAG-TTCTGTTTATCATTTTCTTACTAATCCTCAGCTTGTAA
i canFam3.chr10             I 208 C 0

a score=3811.000000
s hg38.chr22_GL383582v2_alt     84206 3 +    162811 TGA
s panTro4.chr22              40908737 3 +  49737984 TGA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452127 3 +  46535552 AGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106657594 3 - 115148730 AGA
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87618706 3 -  96509753 aga
i macFas5.chr10             C 0 I 4
s papAnu2.chr10              82447026 3 +  90941950 aga
i papAnu2.chr10             C 0 I 4
s calJac3.chrUn_GL286373      1955223 3 -   2117846 AGA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82821019 2 + 104043685 -GG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46091969 1 -  69331447 --A
i canFam3.chr10             C 0 C 0
e chlSab2.chr19              24707367 11 +  33263144 I
e rheMac3.chr10              86961802 12 +  95678458 I

a score=213327.000000
s hg38.chr22_GL383582v2_alt     84209 195 +    162811 GGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCACTAGAGGAGAGGATGTTCCAGTGCTCTATGGCCCCTTCCAAAAAATCCCA-ACCATATTGCCTGAACTTGGGTTGAGGAGGGTAGCTCTAAGCctgtgctgttcagccactagccatacatggccacttaagtttacatt
s panTro4.chr22              40908740 195 +  49737984 AGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCACTAGAGGAGAGGATGTTCCAGTGCTCTATGGCCCCTTCCAAAAAATCCCA-ACCATATTGCCTGAACTTGGATTCAGGAGGGTAGCTCTAAGCctgtgctgttcagccactagccatacatggccacttaagtttacatt
i panTro4.chr22             C 0 I 2
s ponAbe2.chr22              37452130 195 +  46535552 AGGTCCTGCGCTTCTCTGCTGGTGGGCTGGGGTGACAACCTGGGCACAAGCTTCCATTAGAGGAGAGAATGTTCCAGTGCTCTATGGCCCCTTCCAAAGAATCCCA-ACCATATTGCCTGAACTTGGATTGATGAGGGTAGCTTTAAGCctgtgctgttcagccactagccatacatggccacttaagtttaaatt
i ponAbe2.chr22             C 0 I 105
s nomLeu3.chr7b             106657597 195 - 115148730 AGGTCCTGTGCTTCTCTGCTGGTGGGCTGGGGTGGCAACCTGGGCACAAGCTTCCATTAGAGGACAGGATGTTCCAGTGCTCTATGGCCCCTTCCAAAGATTCCCA-ACCATATTGCCTGAACTTGGATTGATGAGGGTATCTCTAAGTctgtgctgttcagccactagccatacatggccacttaagtttaaatt
i nomLeu3.chr7b             C 0 I 2
s calJac3.chrUn_GL286373      1955226 194 -   2117846 AGGTCCTGTGCTTCTCTGCTGGTGTGCTGGGGTGGCAACCTGGT--CAAGCTTCCACTAGAGGAGAGGATGTTCCAGTGCTCTATGGCCCCTTCCACAGAATCCCACCCCATACCACCTGAACGTGAATTGATGAAGGTAGCTCTAAGCCTGTGCTGTTCAGCCATTAGCCATACATGGCCACTTaagttaaaatt
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82821021 157 + 104043685 AGGTCTTGCTTT---------------TGAAGAGGTAGTCTGG---CAAGCTTCCATTAGAAGAAAGGTGTTCCCAGTG---------CCCTTCCTAAGAAT-CTA-ACCATACTGCCTGAGC-----TTCATTAAGGTAGCTCTTAGTCTTATCTGT-----CATGAGTCATACACAGCTATTTGACtttaaatt
i mm10.chr15                C 0 C 0
s canFam3.chr10              46091970 169 -  69331447 GAATTCCCTGCTTCTCTGC---------AGGGTGGCTAATTGAG--GAAGCCTCCTTGGGAGAAGAAGA---------GCCCTGT-GCATCTCCTAGAGAACCCCA-ACCTTACTGCCTGAGC-----TTGACCAAAGTGGGGCTAAGCCTGTGCTTTCCAGCTGTTAGCCACATATGGACACATAAATTTAAGTT
i canFam3.chr10             C 0 I 242
e chlSab2.chr19              24707367  11 +  33263144 I
e papAnu2.chr10              82447029   4 +  90941950 I
e macFas5.chr10              87618709   4 -  96509753 I
e rheMac3.chr10              86961802  12 +  95678458 I

a score=7280.000000
s hg38.chr22_GL383582v2_alt     84404 5 +    162811 aaaaa
s panTro4.chr22              40908937 5 +  49737984 aaaaa
i panTro4.chr22             I 2 C 0
s ponAbe2.chr22              37452430 5 +  46535552 aaaaa
i ponAbe2.chr22             I 105 C 0
s nomLeu3.chr7b             106657794 5 - 115148730 gaaaa
i nomLeu3.chr7b             I 2 C 0
s calJac3.chrUn_GL286373      1955420 4 -   2117846 -aaaa
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82821178 5 + 104043685 taaaa
i mm10.chr15                C 0 I 130
s canFam3.chr10              46092381 5 -  69331447 aaaaa
i canFam3.chr10             I 242 C 0
e chlSab2.chr19              24707367 11 +  33263144 I
e papAnu2.chr10              82447029 4 +  90941950 I
e macFas5.chr10              87618709 4 -  96509753 I
e rheMac3.chr10              86961802 12 +  95678458 I

a score=366054.000000
s hg38.chr22_GL383582v2_alt     84409 367 +    162811 aaaaaattcatttcct-----------------cagtcccact------------agcactcaatgatcacatctggtttgtggttaccacattgg------agagtgctgagctagagcgtttccatcattgcagtatgttAGGCTGAGCTTTGCTGCTTGA-CATCTTAGAAGCTGGACCAGAAGGCAGGCTATCAGC--AGAACGGGGGCAGCCTC------------CAGG--GGGGCCCTTGCTGAAGTGTGCTCGG-------------------------------GTGGGATGTGG-C----------------ACCGGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGT--GGGGGACCACTTCTTACCCAGCTGCGAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAACAATCA--ACCAT-AAAAAAACTTAATACTT
s panTro4.chr22              40908942 368 +  49737984 aaaaaattcatttcct-----------------cagtcccact------------agcactcaatgatcacatctggtttgtggttaccacattgg------agagtgctgagctagagtgtttccatcattgcagtatgttAGGCTGAGCTTTGCTGCTTGA-CATCTTAGAAACTGGACCAGAAGGCAGGCTATCAGC--AGAACGGGGGCAGCCTC------------CAGG--GGGGCCCTTGCTGAAGTGTGCTCGG-------------------------------GTGGGATGTGG-C----------------ACCGGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCCAGCTGCGAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAACAATCA--ACCAT-AAAAAAACTTAATACTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452435 369 +  46535552 aaaaaattcatttcct-----------------cagtcccact------------agcactcaatggtcacatctggtttgtggttacgacactgg------agagtgcagagctacagcgtttccatcattgcagtatgttAAGCTGAGCTTTGCTGCTTGA-CATCTTAGAAACTGGACCAGAAGGCAGGCTATGAGC--AGAACGGGGGCAGCCTC------------CAGG--GGGGCCCTTGCTGAAGTGTGCTCGG-------------------------------GTGGGATGTGG-C----------------ACTTGCCTGTCA-----GCACACCCTAA-TGTGTCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCCAGCTGCAAACTGGGAGAGCCAAAACTCACAGTATTCCCAATATAAAACTAACAATCA--ACCATAAAAAAAACTTAATACTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106657799 369 - 115148730 aaaaaattcatttcct-----------------cagtcccact------------agcactcaatggtcacatctggtttgtggttaccacattgg------agagtgcagagctagagcgtttccatcattgcagaatgttAAGCTGAGCTTTGCTGCTTGA-CATCTTAGAAACTGGACCAGAAGGCAGGCTATGAGC--AGAACGGGGGCAGCCTC------------CAGG--GGGGCCCTTGCTGAAGTGTGCTTGG-------------------------------GTGGGATGTGG-C----------------ACCTGCCTGTCC-----ACACACCCTAACTGTATCCCTGAACACAGCCTCAGTG-GGGGGACCACTTCTTACCTAGCTGCGAACTGGGAAAGCCAAAACTCATAGTATTCCCAATATAAAACTAACAATCA--ACCAT-AAAAAAACTTAATACTT
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1955424 365 -   2117846 aaaaaattaatttcct-----------------ctgtcccact------------aggactcaatggtcacatctggtttgtggttaccacattgg------agagtgcagagctaaagcgtttccatcactgca-------aaGCTGAGCTTTGCTGCCTGA-CATCTTAGAAACTGGACTAGAAGGTAGGCTATGAACCAAGAGCAGGGGCAACCTC------------CAGGGAGGGGCCCTTGCTGAAGTGTGCTTGG-------------------------------GTGGGATGTGG-T----------------ACCTGCCTGTCCTGTCTGCTCACCCTAA-TGTATCCCTGAACACAGCCTCAGTG-GGGAGACCACTTCTTACCCAGGTGCCAACTGGGAGAGTCAACACTCAAAGTATTCCCAATATAA----AAGAATAA--ACCAT--AAAAAACTTAGTACTT
i calJac3.chrUn_GL286373    C 0 I 301
s mm10.chr15                 82821313 433 + 104043685 agagaatccctgtcttgaaaacacaCATATGAAcactcccactatctatatttcaagtactcaacagtcatatat-gtctgcagataccaccacggactagaaaagtgtacagttattgtg-taccattactgaggaatgttctagtgagcagtg-TGCTTTA-CACCTGAGAAACTGTACCAGAAAGTAGACTGGGAGC------CAGGAGCAGCATC------------GACA--GGG--CCTTGCTGTTGGGAACCTGGCTATTTACACAGCTGATACTTGAGGATACAAATGGAGTATGG-CTGGAGTCAAAGTGGTTACCTATCTAGGT-----ATGCAAGCT---TCTGTTTCTGAACACAGTGTCTATATGGGAGACCATTGCTTACCCAGCCACTGACTAAGATAGTCAATTATTGTACAATACCCCATTCAAAAC-AACACCCC--CCCCA-------ACTTGACACTT
i mm10.chr15                I 130 C 0
s canFam3.chr10              46092386 389 -  69331447 aaaaaaattagttcct-----------------cattcccaactaatacattttaagcactcagtggtaacacaaggcttgtggctactgtgctgg------agactgcagaactagaacattcccattatggcagagagtcctcctgagcagcactgCTTAATCACTCAAGAAACTG--CCAGGAGTCTGGTCCCTAAC------TTGGGCTGGTACCCCAGTGTGCAGACAGG--GGGTGCATTAATGTGGGGAGGTGGA-------------------------AGGGGAACGAGATGAGGTC----------------ACCTGCCTGCCA-------CTAACCAGA-TGTGT--CTGAACAAAGCCTTAGTGCAGGAGACCACCTCTTACCAGGCCACTGACTGGGAGAGCCAAGTCTTGCAGTATTCTCTGTATAAAATTATAAATAACTGCCAC-----AAACCTAATACTT
i canFam3.chr10             C 0 C 0
e chlSab2.chr19              24707367  11 +  33263144 I
e papAnu2.chr10              82447029   4 +  90941950 I
e macFas5.chr10              87618709   4 -  96509753 I
e rheMac3.chr10              86961802  12 +  95678458 I

a score=17436.000000
s hg38.chr22_GL383582v2_alt     84776 12 +    162811 AAAAATCCTCAT
s panTro4.chr22              40909310 12 +  49737984 AAAAATCCTCAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452804 12 +  46535552 AAAAATCCTCAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106658168 12 - 115148730 AAAAATCCTCAT
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956090 12 -   2117846 aaaaaTCCTCAT
i calJac3.chrUn_GL286373    I 301 C 0
s mm10.chr15                 82821746 12 + 104043685 GGGAATCCCCAT
i mm10.chr15                C 0 C 0
s canFam3.chr10              46092775 12 -  69331447 ACACATCTTCAT
i canFam3.chr10             C 0 I 70
e chlSab2.chr19              24707367 11 +  33263144 I
e papAnu2.chr10              82447029  4 +  90941950 I
e macFas5.chr10              87618709  4 -  96509753 I
e rheMac3.chr10              86961802 12 +  95678458 I

a score=2415.000000
s hg38.chr22_GL383582v2_alt     84788 3 +    162811 ATA
s panTro4.chr22              40909322 3 +  49737984 ATA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452816 3 +  46535552 ATA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106658180 3 - 115148730 ATA
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956102 3 -   2117846 ATG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82821758 3 + 104043685 TTA
i mm10.chr15                C 0 I 2571
e canFam3.chr10              46092787 70 -  69331447 I
e chlSab2.chr19              24707367 11 +  33263144 I
e papAnu2.chr10              82447029 4 +  90941950 I
e macFas5.chr10              87618709 4 -  96509753 I
e rheMac3.chr10              86961802 12 +  95678458 I

a score=97342.000000
s hg38.chr22_GL383582v2_alt     84791 149 +    162811 TAgctgggcataatggtacatgcctgtattcccagctagttgggaggatcgcttgagcctaagagtttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaaa-----------------TTTTTTTTTTTTTCACTTAAAAGCCATTTTCTTggcc
s panTro4.chr22              40909325 148 +  49737984 TAgctgggcataatggtacatgcctgtattcccagctagttgggaggatcgcttgagcctaagagtttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaaa------------------aTTTTTTTTTTTCACTTAAAAGCCATTTTCTTggcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452819 126 +  46535552 TAgctgggcataatcgtacatgcctgtattcccagctacttgggaggatcgcctgagcctaagagtttgagtccagcctgggcaacacagtga----------------------------------------TTTTTTTTTCACTTAAAAGCCATTTTCTTggcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106658183 166 - 115148730 TAgctgggcataatggtacatgcctgtattcccagctacttgggaggatcgcttgagcctaagactttgagtccagcctgggcaacacagtgagaccctgtctcaaaaaaaaaaaaaaaaatttttttttttttttttttttCACTTAAAAGCCATTTTCTTggcc
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956105 127 -   2117846 TAgctgggcatgatggcacatgcctgtattcccagctacttggaaggatcgcttgagtccaagagtctgagtctaacctgggcaacatagttagaccctgtcacaaaaaaaa----------------------------------aaaaaaTCA-----CCAgcc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787  70 -  69331447 I
e chlSab2.chr19              24707367  11 +  33263144 I
e papAnu2.chr10              82447029   4 +  90941950 I
e macFas5.chr10              87618709   4 -  96509753 I
e rheMac3.chr10              86961802  12 +  95678458 I

a score=129019.000000
s hg38.chr22_GL383582v2_alt     84940 277 +    162811 aggcgcggtggctcacgcctgtaatcccagcactttggggggccaaggtgggcagatcacaaggtcaggagatcgagaccatcccggctaac-acggtgaaaccccgtctctactaaaaacagaaaaaattagccgggcgtggcggcgggcgcctgtagtcccagctgctggggcggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagtcggggcaac-acagcgagactctgtctc
s panTro4.chr22              40909473 277 +  49737984 gggcgtggtggctcacgcctgtaatcccagcactttggggggccgaggtgggcagatcacaaggtaaggagatcgagaccatcctggctaac-acggtgaaaccccgtctctactaaaaacagaaaaaattagccgggcgtggcggcaggcgcctgtagtcccagctgctggggcggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagtctgggcaac-acagcgagactctgtctc
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106658349 277 - 115148730 gggcgcagtggctcacgcctgtaatcccagcacttcggggggccgaggcaggtggatcacaaggtcaggaaatcgaggccatcctggctaac-atggtgaaaccccgtctctactaaaaatagaaaaaattagccgggcgtggcggcaggcacctgtggtcccatctgctggggtggctgaggcaggaaaacggcgtgaacccgggaggcagagcttgcagtgagccgagatcgcaccactgcactccagcctgggcgac-acagtgagacaccgtctc
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956232 278 -   2117846 gggcgcagtggctcacgcctataatcccagcactttgggaggctgaggtgggtggatcacgaggtcaagagatcgagaccatcctggtcaacaaaggtgaaaccccgtctctactaaaaata-caaaaattagctgggcatgatggcgtgtgcctgtagtcccagctactcaggaggttgaggcaggagaactgcttgaacccaggaggtggaggttgcggtgagccgagatcgcgccattgcactccagactgggtaacaacagcgaaactccatctc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787  70 -  69331447 I
e chlSab2.chr19              24707367  11 +  33263144 I
e papAnu2.chr10              82447029   4 +  90941950 I
e macFas5.chr10              87618709   4 -  96509753 I
e rheMac3.chr10              86961802  12 +  95678458 I
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=4787.000000
s hg38.chr22_GL383582v2_alt     85217 7 +    162811 -aaaaaac
s panTro4.chr22              40909750 7 +  49737984 -aaaaaac
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106658626 7 - 115148730 -aaaaaaa
i nomLeu3.chr7b             C 0 I 8
s macFas5.chr10              87618713 6 -  96509753 -agaaaa-
i macFas5.chr10             I 4 C 0
s papAnu2.chr10              82447033 6 +  90941950 -agaaaa-
i papAnu2.chr10             I 4 I 1
s chlSab2.chr19              24707378 6 +  33263144 -aaaaaa-
i chlSab2.chr19             I 11 C 0
s calJac3.chrUn_GL286373      1956510 7 -   2117846 aaaaaaa-
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787 70 -  69331447 I
e rheMac3.chr10              86961802 12 +  95678458 I
e ponAbe2.chr22              37452945 0 +  46535552 C

a score=647571.000000
s hg38.chr22_GL383582v2_alt     85224 289 +    162811 -----aaaaaa-----aaaaaGCCATTTTTTTCAACTAGAAAC--AAAAC---TTTATATTACTGCTCCCC-----CTCTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTACGATGTAACTAGAGGTAATGAAAATGAGAAAAGGCAACTGGTTGGCTCTTTTAAAAACttatttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcctcaagtgatcctctagcctcagcctcccgagtacctgagattacaggtgtgaaccaccatacctagTT
s panTro4.chr22              40909757 288 +  49737984 ------aaaaa-----aaaaaGCCATTTTTTTCAAGTAGAAAC--AAAAC---TTTATATTACTGCTCCCC-----CTCTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTACGATGTAACTAGGGGTAATGAAAATGAGAAAAGGCAACTGGTTGGCTCTTTTAAAAACTTAtttttatttgaacagacctgttcttgctattttatccaggctgaacttgaactcctggcctcaagtgatcctctagcctcagcctcccgagtacctgagattacaggtgtgaaccaccataccTAGTT
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106658641 289 - 115148730 -----aaaaaa-----aaaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTCATATTACTGCTCCCC-------CTTTCCTGGCCACTAGACTACAGGGAAGAAAACACAATATTCTGATGTAACTAGGGGTAATGAAAATGAGAAAAGGCAACTGGTTGGCTCTTTTAAAAACTTAtttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcctcaagcgatcctctagcctcagcctcctgagtagctgagattacaggtgtgaaccaccataccTAGTT
i nomLeu3.chr7b             I 8 C 0
s rheMac3.chr10              86961814 288 +  95678458 -----aaaaaa-----aaaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGGTCATGAAAATGAGAAAAGGCAACTGGTTGGCTCTTTTAAAAACtt-tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcctcaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccATAACTAGTT
i rheMac3.chr10             I 12 C 0
s macFas5.chr10              87618719 288 -  96509753 -----aaaaaa-----aaaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGGTCATGAAAATGAGAAAAGGCAACTGGTTGGCTCTTTTAAAAACtt-tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcctcaagcgattcgctagccttggcctcccgagtagctgagattacaggtgtgaacaaccataactagtt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82447040 288 +  90941950 -----aaaaaa-----aaaaagccattttcttcAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTAGGGgtcatgaaaatgagaaaaggcaaCTGGTTggctcttttaaaaactt-tttttatttgaacAGACCTGttcttgctatgttatccaggctgaacttgaactcctggcctcaagcaattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccATAACTAGTT
i papAnu2.chr10             I 1 C 0
s chlSab2.chr19              24707384 288 +  33263144 -----aaaaaa-----aaaaaGCCATTTTCTTCAACTAGAAACAGAAAAC---TTTGTATTACTGGTCTCC-------CTTTCCTAGCCACTAGTCAACAGGGAATAAAACACAATATTCTGATGTAACTACGGGTCATGAAAATGAGAAAAGGCAACTGGTTGGCTCTTTTAAAAACtt-tttttatttgaacagacctgttcttgctatgttatccaggctgaacttgaactcctggcctcaagcgattctctagccttggcctcccgagtagctgagattacaggtgtgaacaaccatacctagTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1956517 308 -   2117846 aaagaaaaaaaTCACCAAAAAGCCATTTTCTTCAACTAGAAACAAAAAACTTATTTGTATTACCACCCCCCACCCCCTCTTTCCTAGTCACTAGACTACA-GGAAGAAAACACAACGTTCTGATGTAACTAAGGGTAATGAAAATGAGAAAAGGCAACTCGTTGGCTCTTTTAAAAACTTAtttttatttgaacagaccagttctcgttatgtcatctaagctgaacttgaattcctggcctcaagcagtcctctagccacagcctcctgagtagctgggattacagctgtgaaccaccatacctggTT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787  70 -  69331447 I
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=228523.000000
s hg38.chr22_GL383582v2_alt     85513 137 +    162811 AACTGGTTAGCTCTCtttctttttcttttgagacagagtctcgctctgttgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccgggttcaagcgattcccctacctcagcctcccaa
s panTro4.chr22              40910045 137 +  49737984 AACTGGTTAGCTCTCtttctttttcttttgagacagagtctcgctctgttgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccgggttcaagcgattctcctacctcagcctcccaa
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106658930 136 - 115148730 AACTGGTTAGCTCt-tttttttttcttttgagacagagtctcgctctgtcgccaggctggagtgcagtggcgtgatctcagctcactgcaac--ctccacctcccaggttcaagagattcccctacctcagcctcccaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86962102 133 +  95678458 AACTGGTTAGCTCt------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctccgcctcccaggttcaagcaatttccctgcctcagcctcccaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87619007 133 -  96509753 aactGGTTAGCtct------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctccgcctcccaggttcaagcaatttccctgcctcagcctcccaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82447328 133 +  90941950 AACTGGTTAgctct------ttgtttttggagatggagtctcactctgttgccaggctggagtgcagtggcgcgatctcagctcactgcaacctctccgcctcccgggttcaagcaatttccctgcctcagcctcccaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24707672 133 +  33263144 AACTGGTTAGCtct------ttgtttttggagatggagtctcactctgttgccaggctggagtgtagtggcacgatctcagctcactgcaacctctccacctcccgggttcaagcaatttccctgcctcagcctcccaa
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787  70 -  69331447 I
e calJac3.chrUn_GL286373      1956825   0 -   2117846 C
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=213957.000000
s hg38.chr22_GL383582v2_alt     85650 160 +    162811 gtagctgggactacaggcacgcgccaccacacctggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcaatctcctgaccttgtgatccgcccacttcggcctcccaaagtgatgggattacaggtgtgagccac
s nomLeu3.chr7b             106659066 160 - 115148730 gtagatgggactacaggcatgcgccaccacacctggctaatttttcgtattttagtagtgacagggtttcaccatgttggccaggctggtcttgatctcctgacctcgtgatccacccacttcggcctcccaaagtgatgggattgcaagcatgagctgc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86962235 160 +  95678458 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccacccacctcggcctcccaaagtgttggcattacaggcgtgagccac
i rheMac3.chr10             C 0 I 1
s macFas5.chr10              87619140 160 -  96509753 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgttggcattacaggcgtgagccac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82447461 160 +  90941950 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagtgacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgttggcattacaggcgtgagccac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24707805 160 +  33263144 gtagctgggactacaggcatgcgccaccacacccggctaatttttcatattttagtagggacagggtttcaccatgttggccaggctggtctcgatctcctgacctcgtgatccgcccacctcggcctctcaaagtgttggcattacaggcgtgagccac
i chlSab2.chr19             C 0 I 1
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787  70 -  69331447 I
e calJac3.chrUn_GL286373      1956825   0 -   2117846 C
e ponAbe2.chr22              37452945   0 +  46535552 C
e panTro4.chr22              40910182   0 +  49737984 C

a score=67.000000
s hg38.chr22_GL383582v2_alt     85810 1 +    162811 c
s nomLeu3.chr7b             106659226 1 - 115148730 c
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87619300 1 -  96509753 t
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82447621 1 +  90941950 t
i papAnu2.chr10             C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787 70 -  69331447 I
e calJac3.chrUn_GL286373      1956825 0 -   2117846 C
e chlSab2.chr19              24707965 1 +  33263144 I
e rheMac3.chr10              86962395 1 +  95678458 I
e ponAbe2.chr22              37452945 0 +  46535552 C
e panTro4.chr22              40910182 0 +  49737984 C

a score=951.000000
s hg38.chr22_GL383582v2_alt     85811 11 +    162811 gtgcctggccC
s nomLeu3.chr7b             106659227 11 - 115148730 gtgcctggtcC
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787 70 -  69331447 I
e calJac3.chrUn_GL286373      1956825  0 -   2117846 C
e chlSab2.chr19              24707965  1 +  33263144 I
e papAnu2.chr10              82447622  0 +  90941950 C
e macFas5.chr10              87619301  0 -  96509753 C
e rheMac3.chr10              86962395  1 +  95678458 I
e ponAbe2.chr22              37452945  0 +  46535552 C
e panTro4.chr22              40910182  0 +  49737984 C

a score=846.000000
s hg38.chr22_GL383582v2_alt     85822 3 +    162811 AAC
s nomLeu3.chr7b             106659238 3 - 115148730 AAC
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956825 3 -   2117846 AAC
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46092787 70 -  69331447 I
e chlSab2.chr19              24707965 1 +  33263144 I
e papAnu2.chr10              82447622 0 +  90941950 C
e macFas5.chr10              87619301 0 -  96509753 C
e rheMac3.chr10              86962395 1 +  95678458 I
e ponAbe2.chr22              37452945 0 +  46535552 C
e panTro4.chr22              40910182 0 +  49737984 C

a score=64528.000000
s hg38.chr22_GL383582v2_alt     85825 167 +    162811 TGGTTAGCTCTTGAAAGAGA-----------------------------AGGATTTAACAGCTGTACTACAGAATATGGCAGACCATGACCCAGGGTAAATTACACCTTAGACTCAACATGAAAACATTTGGAGGAAAAAAGAGAACAGAAGGGATGGACTAAAACCCAAACTCCCTGAACTGACATTTCAAGGCT
s nomLeu3.chr7b             106659241 167 - 115148730 TGGTTAGCTCTTGAAAGAGA-----------------------------AGGATTTAACAGCTGTACTACAGAATATGGCAGACCATGACCCAGGGTAAATTACACCTCGGACTCAACATGAAAATATTTGGCGGAAAAAAGAGAATGGAAGGGATGGACTAAAACCCAAACTCCCTGAACTGACATTTCAAGGCT
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956828 163 -   2117846 TGGTTAGCTCTT----GAGA-----------------------------AGGATTTAACTGCTGTACTACCGAATATGGCAGACCATGACCCAGGGTAAATTACAGCTTAAACTCAACATGAAAACATTTGGAGGAGAAAAGAGAATGAAGAGGACGGACTAAAACCCAAACTTCCGGCACTGATATTTCAAGGCT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46092857 190 -  69331447 TGGCTGGCTCTTgagagagagagagagagagggagagggagagagagagagGACTAAGAGGCTGTACTATCGAATATACCA------GACTCAGGGTGAATTACAGTTCAGACCCAACACAGAAACATGTAGGGAAAGAAAGAGAATGCAGGGGACAGACTAAAACCCAACCTCCCTGAACTGACATTTCAAGGCT
i canFam3.chr10             I 70 I 101
e mm10.chr15                 82821761 2571 + 104043685 I
e chlSab2.chr19              24707965   1 +  33263144 I
e papAnu2.chr10              82447622   0 +  90941950 C
e macFas5.chr10              87619301   0 -  96509753 C
e rheMac3.chr10              86962395   1 +  95678458 I
e ponAbe2.chr22              37452945   0 +  46535552 C
e panTro4.chr22              40910182   0 +  49737984 C

a score=22649.000000
s hg38.chr22_GL383582v2_alt     85992 112 +    162811 ACTTCAtttttg----ttttgagatagggtctcactctgttgcccaggctggagtgcagtggcccaactgagggtcatgcagcccctcctggg---------tccttccatctcagcctccctgg
s nomLeu3.chr7b             106659408 120 - 115148730 ACtttgtttttg----ttttgagataggatctcactctgttgcccaggctggagtgcagtggcccaactgaggctcatgtagcccctcctgggctcag-taatccttccatctcagcctccctgg
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1956991 113 -   2117846 Attttgtttttgttttttttgagacagggtctcactctgttgcccaggctggagtgcagtggc-----------tcatgcagcccctcctgggctcagatgatccttccatctcagcctcctgg-
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093047 101 -  69331447 I
e chlSab2.chr19              24707965   1 +  33263144 I
e papAnu2.chr10              82447622   0 +  90941950 C
e macFas5.chr10              87619301   0 -  96509753 C
e rheMac3.chr10              86962395   1 +  95678458 I
e ponAbe2.chr22              37452945   0 +  46535552 C
e panTro4.chr22              40910182   0 +  49737984 C

a score=118950.000000
s hg38.chr22_GL383582v2_alt     86104 239 +    162811 gtagctgggactacagacaagggccaccacgcctggctaattttttgtattttttgtagagacagggtttcaccatgttggccaggctggtctcgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctgggattacaggtgtgagccaccacacctggcACTCTGTTTCTGATTCCCTATCTTTCCGTTGATCAAATAGTGCCTTGGCCATCAAGCTGCCTTTCA
s panTro4.chr22              40910182 239 +  49737984 gtagctgggactacagacaagggccaccacgcctggctaattttttgtattttttgtagagacagggtttcgccatgttggccaggctggtctcgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctgggattacaggtgtgagccaccacacctggcACTCTGTTTCTGATTCCCTATCTTTCCTTTGATCAAATAGTGCCTTGGCCATCAAGCTGCCTTTCA
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106659528 239 - 115148730 gtagctgggactacagacaagggccaccacccctggctaattttttgtattttttgtagagatggggtttcgccacattggccaggctggtcttgaactcctgggctcaagcaatcctcccacctcagcctccgaaagtgctaggattacaggtgtgagccaccacacctggcACTCTGTTTCTGATTCCCTATTTTTCCTTTGATCAAATAGTGCCTTGGCCATCAAGCTGCCCTTCA
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1957104 238 -   2117846 gtagctgggggtacaggcaagagttaccatgcctggctaattttttttattttttgtagagatagggttttgtcatgttggccaggctgctctcaaacctctgggctcaagcactcttcccatctcagcctccaaaaatgctgggactacaggtgtgagccactgcacctgacACTCTATTTCTGATTTCCTATTTTTCCTCTGATCAAACAGTGCCTTGG-CATCAAGCTGCCCTTCA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093047 101 -  69331447 I
e chlSab2.chr19              24707965   1 +  33263144 I
e papAnu2.chr10              82447622   0 +  90941950 C
e macFas5.chr10              87619301   0 -  96509753 C
e rheMac3.chr10              86962395   1 +  95678458 I
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=472721.000000
s hg38.chr22_GL383582v2_alt     86343 209 +    162811 GTCCACATGTACGTGTGAATACACACACTTTTGTAATAGTCTAACTGGCATCAGCATTATCTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAAAAGAGGGAAGGGGGAGGTAAGGGCAAG---AAGGATGTGAAAGGAATGGAGACATATGCTTAAACAAAAGTCAGGAGCTGCAAGCAACTGCTGCGC
s panTro4.chr22              40910421 210 +  49737984 GTCCACATGTACGTGTGAATACACACACTTTTGTAATAATCTAACTGGCATCAGCGTTATCTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTggagagaaaagagggaagggggaggtaagggcaaggagaaggatgtgaaaggaatggaGACAT--GCTTAAACAAAAGTCAGGAGCTGCAAGCAACTGCTGCGC
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106659767 210 - 115148730 GTACACATGTACGTGTGAATACACACATTTTTATAAGACTCTAACTGGCATCAGCGTTATCTTCTCTACCTCTCTTGTTCTTTTTAACTGCTTCTCCTACAGAAGCTTGGAGAGAAAAGagggaagggggaggtaagggcaaggagaaggatgtgtaaggaatggaGACAT--GCTTAAACAAAAGTCAGGAGCTGCAAGCAACTGCTGCGC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86962396 207 +  95678458 gTCCACATGTATATGTGAATACACAC--TTTTATAAGAATCTAACTGGCATCAGTGTTATCTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTT-GagagaaaagagggaaggaaaaggtaagggcaaggagatggatgtgaaaggaagggaGACAT--GCTTAAACAAAAgtcaggagctgcaagtaattgctgcac
i rheMac3.chr10             I 1 C 0
s macFas5.chr10              87619301 207 -  96509753 gTCCACATGTATGTGTGAATACACAC--TTTTATAAGAATCTAACTGGCATCAGTGTTATCTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTT-GAGAGAAAAGagggaaggaaaaggtaagggcaaggagatggatgtgaaaggaagggaGACAT--GCTTAAACAAAAGTCAGGAGCTGCAAGTAATTGCTGCAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82447622 208 +  90941950 gtccacATGTATGTGTGAATACACAC--TTTTATAAGAATCTAACTGGCATCAGTGTTATCTTCTCTACCTCTCTTGttctttttaactgtttctcCTACAGAAGCTTGGAGAGAAAAGAGGGCAGGAAAAGGTAAGGGCAAGGAGATGGATGTGAAAGGAAGGGAGACAT--GCTTAAACAAAAGTCAGGAGCTGCAAGTAATTGCTGCGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24707966 208 +  33263144 gTCCACATGTATGTGTGAATACACAC--TTTTATAAGAATCTAACTGGCATCAGTGTTATCTTCTCTACCTCTCTTGTTCTTTTTAACTGTTTCTCCTACAGAAGCTTGGAGAGAAAAGagggaaggaaaaggtaagggcaaggagaaggatgtgaaaggaagggaGACAT--GCTTAAACAAAAGTCAGGAGCTGCAAGTAATTGCTGCGC
i chlSab2.chr19             I 1 C 0
s calJac3.chrUn_GL286373      1957342 206 -   2117846 GTGCACATGTACGTGGGAACACACAC--TTTTATAAGAATCTAACTGGCAACAGCGTTGTCCTCTATACCTCTCTTGTTCTTTTTAGCTGTTTCTCCTACAGAAGCTTGGAGAGAAAAGAGGGAAGCAGGAGGTAAGGGCAAGGAGAAGGATGTG-GAGGAATGGAGACAT--GCTGACACAAAAGTCAGGAGCTGC-AGCAACTGCTGTGC
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093047 101 -  69331447 I
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=833245.000000
s hg38.chr22_GL383582v2_alt     86552 332 +    162811 -TGGAAGGAAGGGGGGGGCAGGATGAATTCTGAGACCTGATCCAAGTCT-GTT-GGCCCTGCTCTGTGTATGTTATGCCTC-ACGCCTG-TTCCCATCATGCAGTCAGCCACGCCCTCTTCCCCTTCCCATCAAATTCAAATCAAACCCCGCCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGGGAAGCACAGAGAGG-GGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTTCTCTCACCACTTTT-----CCTCAAACGTGACCACAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGATACATCTAATGCTC
s panTro4.chr22              40910631 331 +  49737984 -TGGAAGGAAGGGTGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCT-GTT-GGCCCTGCTCTATGTGTGTTATGCCTC-ATGCCTG-TTCCCATCATGCAGTCAGCCACGCCCTCTTCCCCTTCCCATCAAATTCAAATCAAACCCCGCCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGGGAAGCACAGAGAGG-GGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTTCTCTCACCACTTTT-----CCTCAAACGTGACCACAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGATATATCTAATGCTC
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106659977 331 - 115148730 -TGGAAGGAAGGGTGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCT-GTT-GGCCTTGCTCTATGTGTGTTATGCCTC-ATGCCTG-TTCCCATCATGCAGTCAGCCACGCCCTCTTCCCCTTCCCATCAAATTCAAATCAAACTTCACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACGGCCTTGCTTCTCTCCTGGGGAAGCACAGAGAGG-GGGCATGCACATGACAAGCACCATGCTACTTGCTGC-------CTTCTCTCACCACTTTT-----CCTCAAACGTGACCACAGGCATTATGAGGGCTGCCTGGGTG--ATGGTCTTAGATACATCTAATGCTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86962603 330 +  95678458 -tggaaggaagggtggg-caggatgaattctgagacctgatccaagtct-gTT-GGCCCTGCTCTATGTGTGTTATGCCTC-ATGCCTG-TTCCCATTATGCAGTCAGCCATGCCCTCTTCCCCTT-CCATCAAATTCAAATCAAACCCCACCTCCTATGGACAGCG-TGGCTGCCTTCGTGGACAGCCCTGCTTCTCTCCTGGGGAAGCACAGAGAAG-GGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTTCTCTCGTCACTTTT-----CCTCAAACGTGACCATAGGCACTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87619508 330 -  96509753 -TGGAAGGAAGGGTGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCT-GTT-GGCCCTGCTCTATGTGTGTTATGCCTC-ATGCCTG-TTCCCATTATGCAGTCAGCCATGCCCTCTTCCCCTT-CCATCAAATTCAAATCAAACCCCACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGGGAAGCACAGAGAAG-GGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTTCTCTCGTCACTTTT-----CCTCAAACGTGACCATAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82447830 330 +  90941950 -TGGAAGGAAGGGTGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCT-GTT-GGCCCTGCTCTATGTGTGTTATGCCTC-ATGCCTG-TTCCCATTATGCAGTCAGCCATGCCCTCTTCCCCTT-CCATCAAATTCAAATCAAACCCCACCTCCTATGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCCGGGGAAGCACAGAGAAG-GGGTATGCAGATGACAAGCACCGTGCTACTTGCAGC-------CTTCTCTCGTCACTTTT-----CCTCAAACGTGACCATAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24708174 330 +  33263144 -TGGAAGGAAGGGTGGG-CAGGATGAATTCTGAGACCTGATCCAAGTCT-GTT-GGCCCTGCTCTATGTGTATTATGCCTC-ATGCCTG-TTCCCATTATGCAGTCAGCCATGCCCTCTTCCCCGT-CCAACAAATTCACATCAAACCCCACCTCCTGTGGACAGCG-TGGCTGCCTCCGTGGACAGCCCTGCTTCTCTCCTGGGGAAGCACAGAGAAG-CGGCATGCAGATGACAAGCACCGTGCTACTTGCAGA-------CTTCCCTCGCCACTTTT-----CCTCAAACGTGACCATAGGCATTATGGGGGCTGCCTGGGTG--ATGGTCTTAGACACATCTAATGCTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1957548 336 -   2117846 -TGGAAGGGTGGGCGGG-CAGGATGAACTCTGAGACCTGGTCCAAGTCTGGTG-GGCCCTGCTCTATGTGTGTTATGCCTC-TTGCCTG-TTCCCATCACGCAGTCAGCGATACCCTCTTCCCCTTCCCATCATATTCAAATCAAACCCCACCTCCTAGGGACAGTATTATCTGCCTCCATAGAAAACCCTGCTTCCCTCCTGGGGAAGCACAGAGAAGAGGGCAAGCAGATGACAAGTACCATGCTACTTGCTGC-------CTTCTCCCACCACTTTT-----CCTCAAACGTGACCACAGGCATTATGGGGGCTGCCTGGGTGTTATGGTCTTAGACACAGCTAATGCCC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46093148 305 -  69331447 TGGGAAGGAAGGGTGGT-CCAGATGCACTTGCACTCCC--CCCACGCCT-GTCAGATTCCACTCCCTGTGCTTTGTGCCCCTGTACCTGCTTCCCACCACCTGGTAAGCCACACCCTCCCATCCTCCCTGCCAATTCCAAATCAAACCCCACCTCCTAAGGAGAGTA-CAGCTGCCTCC----------------CTCTC------AAGCAGTTAGAGA------------TGATCAGCACCCTGCCACTTGATGCACCCTCGCTGATCTTCCCATTTTTGTCCCCCTCCATCTTTG--ATGAAAATACTTAGGGCCATTGAGGTG--AAGATCTTAGACAC-----ACGCTC
i canFam3.chr10             I 101 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=930589.000000
s hg38.chr22_GL383582v2_alt     86884 435 +    162811 AAG---Taactagaggacattatgtcaagtgaaataagccaggcacggaaagttaaaagctgcatgttctcgctcatgtggaaatttaaaaagctgatcttacggaagtat---taaaaagtagaacagaggatactagaggccaggaaggggaaaggaaagg-----aagagataagtagagatttgttaaagaatacaaaattacatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaacattatattgtatagtttcaaatgactagaagataccaaatgttcccaacacagacatgttgtttgagacgatggatttgctaattacctaggtctgatcattttatatatata----ttgaa-----------------------------acattactgagcaccccatatctacaattactgtccattaaaaaaaGTAAAAAACgct
s panTro4.chr22              40910962 438 +  49737984 AAGAAGTaactagaggacattatgtcaagtgaaataagccaggcacagaaagttaaaagctgcatgttctcgctcatgtggaaatttaaaaagctgatcttacggaagtat---taaaaagtagaacagaggatactagaggccaggaaggggaaaggaaagg-----aagagataagtagagatttgttaaagaatacaaaattacatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaacattatattgtatagtttcaaatgactagaagataccaaatgttcccaagacagacatgatgtttgagatgatggatttgctaattacctaggtctgatcattttatatatata----ttgaa-----------------------------acattactgagcaccccatatctacaattactgtccattaaaaaaaGTAAAAAAggct
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106660308 436 - 115148730 AAGAAGTaactagaggacattatgtcaagtgaaataagctaggaacagaaagttaaaagctgcatgttctcgctcatgtggaaatttaaaaagctgatcttacggaagtat---taaaaagtagaatagagaatactagaggccaggaaggggaaaggaaagg-----aagagataagtagagatttgttaaagaatacaaaattacatctagatgggagaaataagttctagtattctgtatcactgtaggataaccacagttaacaatattatattgtatagtttcaaatgattagaagataccaaatgttcccaacacagatatgatgtttgagacgatgggtatgctaatcatctaggtctgatca--ttatatatata----tagaa-----------------------------acgttactgagcaccccatatctacaattactgtccattaaaaaaaGTAAAAAAggct
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86962933 432 +  95678458 AAGAAGTaactagaggacattatgtcaactgaaataagccaggcacagaaagttaaaagctgcatgttcttgctcacgtggaaatttaaaaagctgaccttatggaagtat---taaaaagtagaacagaggatactagaggctaggaaagggaaaggaaggg----------ataagtagagatttgttaaagaatacaaaattacatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagataccacatgttcccaacacagacatgacatttgagatgatggatatgctaattacctaggtctgatca--ttatatatatata--ttgaa-----------------------------acattactgagcaccccatatctacaattaatgtccatt-aaaaaaGTAAAAAAggct
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87619838 434 -  96509753 AAGAAGTaactagaggacattatgtcaactgaaataagccaggcacagaaagttaaaagctgcatgttcttgctcacgtggaaatttaaaaagctgaccttatggaagtat---taaaaagtagaacagaggatactagaggctaggaaagggaaaggaagag----------ataagtagagatttgttaaagaatacaaaattacgtctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagataccacatgttcccaacacagacatgacatttgagatgatggatatgctaattacctaggtctgatca--ttatatatatatatgttgaa-----------------------------acattactgagcaccccatatctacaattaatgtccatt-aaaaaagtaaaaAAggct
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82448160 427 +  90941950 AATAAGtaactagaggacattatgtcaactgaaataagccaggtacagaaagttAAAAGCTGCATGTTCTTGCTCACgtggaaatttaaaaagctgaCCTTATGGAAGtat---taaaaagtagaacagaggatactagaggctgggaaagggaaaggaaggg----------ataagtagagatttgttaaagaataaaaaattacatcTAGATgagagaaataagttctagtattctgTATCACTGTAGGATGACCACagtt---aacaatatattgtatagtTCCAAATGACCAGAAGATACCACATGTTCCCAACACAGACATGacatttgagatgatggatatgctaattacctagGTCtgatca--ttatatatata----ttgaa-----------------------------acaTTACTGAGCACCCCATATCTACAATTAATGtccatt-aaaaaagtaaaaaaggct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24708504 429 +  33263144 AAGAAGTaactagaggacattatgtcaactgaaataagccaggcacagaaagttaaaagctgtatgttcttgctcacgtggaaatttaaaaagctgaccttacggaagtat---taaaaagtagaacagaggatactagaggctaggaaagggaaaggaaggg-----------taagtagagatttgttaaagaatacaaaattacatctagatgagagaaataagttctagtattctgtatcactgtaggatgaccacagttaacaacaatatattgtatagttccaaatgaccagaagataccacatgttcccaacacagacatgacatttgagatgatagatatgctaattacctagttctgatca--ttatatatata----ttgaa-----------------------------acattactgagcaccccatatctacaattaatgtccatt-aaaaaagtaaaaAAggct
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1957884 445 -   2117846 AGGAAATaacaagaagacattatgtcaa--------------gcacagaaagttaaaagctgcatgttctcattcatgtggaaactaaaaaagctgatcttacagaagtattaataaaaagtagaacataggatactagaggctaggaaggggaaaggaaaggaaaggaaggggtaagcagagatttgttaaataatacaaaattacatctagatggga-aaataagttctagtgt------tcactacagaatgacaacagtt---aacgatgtattgtatagtttcaaatgaccagaagataacaaacgttccca------acatgatgtttgagatgttagatatgctaattacccaggtctgatcattttatttacaca----cacaacacacacacacacacacacacacacacacacacacacgagcaccccatgtctataattattgtccattaaaaaaaGTAAAAAAggct
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093453   0 -  69331447 C
e ponAbe2.chr22              37452945   0 +  46535552 C

a score=303679.000000
s hg38.chr22_GL383582v2_alt     87319 98 +    162811 gggcgcggtggctcacgtctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcgggagtttgaaaccagcctggccaacatgg
s panTro4.chr22              40911400 98 +  49737984 gggcgcggtggctcacgtctgtaatccctgcactttgggaggctgaggtgggtggatcacctgaggtcagaagtttgaaaccagcctggccaacatgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37452945 98 +  46535552 gggcacggtggctcatgtctgtaatcccagtactttgggaggctgaggtgggtggatcacctgaggtcaggagtttgaaacgagcctggccaacatgg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106660744 98 - 115148730 gggcacggtggctcacgtctgtaatcccagcactttggggggctgaggtgggtggatcacctgagatcaggagtttgaaaccagcctggccaacatgg
i nomLeu3.chr7b             C 0 M 100
s rheMac3.chr10              86963365 98 +  95678458 gggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggcaggtggatcatctgaggtcaggagtttgaaaccagcctggccaacatgg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87620272 98 -  96509753 gggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggcaggtggatcatctgaggtcaggagtttgaaaccagcctggccaacatgg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82448587 98 +  90941950 gggcgcggtgcctcacgtctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctggccaacatgg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24708933 98 +  33263144 gggtgcggtggctcacgtctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctggccaacatgg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1958329 98 -   2117846 ggtcacagtggctcacatctctaatcccagcactttgggagaccaaggcgggtggatcacctgaggccaggagttggaaatcagcctggtcaacatgg
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093453  0 -  69331447 C

a score=60701.000000
s hg38.chr22_GL383582v2_alt     87417 26 +    162811 caaaaccccgtctctactaaaaatac
s panTro4.chr22              40911498 26 +  49737984 caaaaccccgtctctactaaaaatac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37453043 26 +  46535552 caaaacccagtctctactaaaaatac
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86963463 26 +  95678458 caaaaccctgtctctactaaaaatac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87620370 26 -  96509753 caaaaccctgtctctactaaaaatac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82448685 26 +  90941950 caaaaccctgtctctactaaaaatac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24709031 26 +  33263144 caaaaccctgtctctactaaaaatac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1958427 26 -   2117846 caaaatcccatctctagtaaaaataa
i calJac3.chrUn_GL286373    C 0 I 160
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093453  0 -  69331447 C
e nomLeu3.chr7b             106660842 100 - 115148730 M

a score=2548.000000
s hg38.chr22_GL383582v2_alt     87443 1 +    162811 a
s panTro4.chr22              40911524 1 +  49737984 a
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37453069 1 +  46535552 a
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86963489 1 +  95678458 a
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87620396 1 -  96509753 a
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82448711 1 +  90941950 a
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24709057 1 +  33263144 a
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1958613 1 -   2117846 a
i calJac3.chrUn_GL286373    I 160 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093453 0 -  69331447 C
e nomLeu3.chr7b             106660842 100 - 115148730 M

a score=588877.000000
s hg38.chr22_GL383582v2_alt     87444 209 +    162811 aaaattagccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgca-gtgggctgagatcatgccattgtactttagcctgggcgataagagcgaaacttcgtctcaaaaag------aaaagtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCGCCA
s panTro4.chr22              40911525 209 +  49737984 aaaattagccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgca-gtgggctgagatcatgccattgtactttagcctgggcgataagagcgaaacttcgtctcaaaaag------aaaagtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCACCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37453070 210 +  46535552 aaaattagctgggcatggtggtgggtgcctgtagtcccagctactcaggaggctgtggcaggagaatcacttgaatctgggaggcagaggttgcaggtgggctgagatcatgcctttgtacttcagtcggggcgacaaaagcgaaacttcatctcaaaaag------aaaagtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCGCCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106660942 207 - 115148730 aaaatt-gccgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgtggcaggagaatcacctgaatctgggaggcagaggttgca-gtgggctgagatcatgccattgtactttagcctgggtgacaagagcgaaacttcatctcaaaaag-------aaagtaaaaaaCTTAATAAACTTGAAATTAACACCCACCTTGCCGCTA
i nomLeu3.chr7b             M 100 C 0
s rheMac3.chr10              86963490 208 +  95678458 aaaattagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgca-gtgggctgagatcatgccactgcactctagcctgggcaacaagagcgaaacttcatctaaaaaaa-------aaagcaaaaaaCTTAATAAACTTGAAATTAACGCTCACCCTGCCACCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87620397 208 -  96509753 aaaattagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgca-gtgggctgagatcatgccactgcactctagcctgggcaacaagagcgaaacttcatctaaaaaaa-------aaagcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82448712 208 +  90941950 aaaattagccaggcacggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgca-gtgggctgagatcatgccactgcactctagcctgggcaacaagagcgaaacttcatctcaaaaaa-------aaagcaaaaaacttaaTAAACTTGAAATTAACACTCACCCTGCCACCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24709058 207 +  33263144 aaaattagccaggcatggtgacgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaatctgggaggcagaggttgca-gtgggctgagatcacgccactgcactctagcctgggcaacaagagcgaaacttcatctc-aaaaa-------aaagcaaaaaaCTTAATAAACTTGAAATTAACACTCACCCTGCCACCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1958614 210 -   2117846 aaaagtagctgggtgtggtcgtgtgagcctgtaatcccagctactcaggaggctgaggcagaagaatggcttgaacccaggaggcggaggttgca-gtgagctgagatcatgccattgtactctggtctgggcaataagagcaaaactttgtttcaaaaaaaaaaaaaaaagtaaaaaTCCTAATAAACT-----TTAACACCCACCCCGCCGCTG
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093453   0 -  69331447 C

a score=687774.000000
s hg38.chr22_GL383582v2_alt     87653 206 +    162811 AAAAAGTAACTGGGGAAAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGAAAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCAAAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTTTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGCAAAACATCCCCCT-ATCATCTCAGCAAAG----AAAATACA
s panTro4.chr22              40911734 205 +  49737984 AAAAAGTAACTGGGGAAAACACCCACT-AAGGGACTAAAAGTCTAGAGTAAGAAAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCAAAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTTTCACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGCAAAACATCCCCCT-ATCATCTCAGCAAAG----AAAATACA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37453280 202 +  46535552 AAAAAGTAACTGGGGAAAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGAAAGGTGATTTTCCCGGGTTATCGAAGCTCTGAGTCAAAACTCAAGTCTTCTGCGTCACTCACTGGATGGCAC----TTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGCAAAACATCCCCCT-ATCATCTCAACAAAG----AAAATACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106661149 206 - 115148730 AAAAAGTAACTGGGGAAAACACCCACTGAAGGGACTAAAAGTCTAGAGTAAGAAAGGTGATTTTCCCAGGTTATCGAAGCTCTGAGTCAAAACTCAAGTCTTCTGCGTCACTCATTGGATGGCACTTCTTTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACACTGCAAAACATCCCCCT-ATCATCTCAACAAAG----AAAATACA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86963698 206 +  95678458 AAAAAGTAACTGGGGAAAACACCCACTAAAGGGACTAAAAGTCTAGGGTAAGAAAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCAAAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTTTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGCAAAACATCCCCCT-ATCATCTCAACAAAC----AAAATACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87620605 206 -  96509753 AAAAAGTAACTGGGGAAAACACCCACTAAAGGGACTAAAAGTCTAGGGTAAGAAAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCAAAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTTTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGCAAAACATCCCCCT-ATCATCTCAACAAAC----AAAATACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82448920 206 +  90941950 AAAAAGTAACTGGGGAAAACACCCACTAAAGGGACTAAAAGTCTAGAGTAAGAAAGGTGATTTTCCCAGGTTATTGAAGCTCTAAGTCAAAACTCAAGTCTTCTGCATCACTCACTGGATGGCACTTCTTTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGCAAAACATCCCCCT-atcatctcaacaaac----aaaataca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24709265 206 +  33263144 AAAAAGTAACTGGGGAAAACACCCACTAAAGGGACTAAAAGTCTAGAGTAAGAAAGGTGATTTTCCCAGGTTACTGAAGCTCTAAGTCAAAACTCAAGTCTTCTGCATCACTCACTGGATGGCATTTCTTTAACAAAATGTTTCCCTTCTTTCAACAGTTAACACATTGCAAAACATCCCCCT-ATCATCTCAACAAAC----AAAATACA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1958824 190 -   2117846 AAAAAGTTAACTGGGAAAACACCCACTGAAGGGACT-AAAGTCTAGAAAAAGAAAGGTGATTCTCCCAGGTTATCGAAGCTCGGAGTCAAAACTCTGGTCTTCTGCACCACTCACTGGACAGCACTTCTTTAACAGAATGTCTCCCTTCTTTCAACAGTTAACACA---------------CT-ATCATCTCAACAAAC----AAAATGCA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46093453 201 -  69331447 AAAAAGTAATTGGTGAGAATATCTATTGAAAGGAC-AAGAATCTGGA-TGAAAAAGAGAACTTTCACAGGCTA---AAGCTTGGGGTCAAAATTTAATTC-----CACCACTCACTGGATGGAACTTCATGGACAAAAGTTTTCCCTTCTTTCAACCGTTATGACACTGCCAAATGCTATTCtgatcatctcaacagacatggaaaaaaca
i canFam3.chr10             C 0 I 1645
e mm10.chr15                 82821761 2571 + 104043685 I

a score=3208068.000000
s hg38.chr22_GL383582v2_alt     87859 1150 +    162811  
s panTro4.chr22              40911939 1150 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37453482 1159 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106661355 1159 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86963904 1145 +  95678458  
i rheMac3.chr10             C 0 I 45
s macFas5.chr10              87620811 1147 -  96509753  
i macFas5.chr10             C 0 I 45
s papAnu2.chr10              82449126 1205 +  90941950  
i papAnu2.chr10             C 0 I 45
s chlSab2.chr19              24709471 1098 +  33263144  
i chlSab2.chr19             C 0 I 258
s calJac3.chrUn_GL286373      1959014 1146 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093654 1645 -  69331447 I

a score=41264.000000
s hg38.chr22_GL383582v2_alt     89009 19 +    162811 cggcctacaaataattctt
s panTro4.chr22              40913089 19 +  49737984 cggcctacaaatagttctt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37454641 19 +  46535552 tggcctacaaataattctt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106662514 15 - 115148730 tggcctacaaa----tctt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86965094 19 +  95678458 cggcctacaaataattctt
i rheMac3.chr10             I 45 C 0
s macFas5.chr10              87622003 19 -  96509753 cggcctacaaataattctt
i macFas5.chr10             I 45 C 0
s papAnu2.chr10              82450376 19 +  90941950 cggcctacaaataattctt
i papAnu2.chr10             I 45 C 0
s calJac3.chrUn_GL286373      1960160 19 -   2117846 tggcctacaaataattctt
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093654 1645 -  69331447 I
e chlSab2.chr19              24710569 258 +  33263144 I

a score=40872.000000
s hg38.chr22_GL383582v2_alt     89028 13 +    162811 aaaacttgacatt
s panTro4.chr22              40913108 13 +  49737984 aaaacttgacatt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37454660 13 +  46535552 aaaacttgacatt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106662529 13 - 115148730 aaaacttgacatt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86965113 13 +  95678458 aaaacttgacatt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622022 13 -  96509753 aaaacttgacatt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82450395 13 +  90941950 aaaacttgacatt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24710827 13 +  33263144 AAaacttgacatt
i chlSab2.chr19             I 258 C 0
s calJac3.chrUn_GL286373      1960179 13 -   2117846 aaaacttgacgat
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82821761 2571 + 104043685 I
e canFam3.chr10              46093654 1645 -  69331447 I

a score=284019.000000
s hg38.chr22_GL383582v2_alt     89041 93 +    162811 aaaaagataaacaacccaattttacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccaataggcacaagaaa
s panTro4.chr22              40913121 93 +  49737984 aaaaagataaataacccaattttacaatgggcaaaggatgtgaatagctatttctccaaagatgatgtacaaatggccaataggcacatgaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37454673 93 +  46535552 aaaaagataaataacccaattttacaatgggcaaaggatgtgaatagccatttctccaaagaagatgtacaaatagccaataagcacatgaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106662542 93 - 115148730 aaaaagataaataacccaattttacaatgggcaaaggatgtgaatagctatttctccgtagaatatgtacaaatggccaataagcacatgaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86965126 88 +  95678458 aaaaaaa----taatccaattttacaatgggcaaaggatgtgaatagctacttctccaaagatgatgcacaaatgaccaataagcacatg-aa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622035 87 -  96509753 aaaaaaa-----aatccaattttacaatgggcaaaggatgtgaatagctacttctccaaagatgatgcacaaatgaccaataagcacatg-aa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82450408 88 +  90941950 aaaaaaa----caatccaattttacaatgggcaaaggatgtgaatagCTACTTCTCCAAAGATGATgcacaaatgaccaataagcacatg-aa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24710840 87 +  33263144 aaaaaaa-----aatccaattttacaacgggcaaaggatgtgaatagctacttctccaaagaagatgtacaaatgaccaataagcacatg-aa
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1960192 92 -   2117846 aaaaagataaataacccaatttaacaatgggcaaaggatgtgaatagctatttctccaaagaagatgtacaaatggccaataagcacata-aa
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82824332 90 + 104043685 AATAAGTAaaacaa--caatttaacagtgggcagagaactggaatgaacacttctccatagaagttgtacaaatgaccaataagcacata-ga
i mm10.chr15                I 2571 C 0
e canFam3.chr10              46093654 1645 -  69331447 I

a score=830414.000000
s hg38.chr22_GL383582v2_alt     89134 259 +    162811 aaaatgctcga---cattagccatcagggaaatacaaataaaaaccacaatgaaataacatttcatacccactgggctggctacaatt--aaaaaaaaaaaaaaaaa------gaa-------acacatatgacagcaagtgtcagggaggacctggggaaaggagaacactcatgcactgccactgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaacagag-----ttaccatatgatccagcaattctac
s panTro4.chr22              40913214 257 +  49737984 aaaatgctcga---cattagccatcagggaaatacaaataaaaaccacaatgaaataacatttcatacccactgggctggctacaatt--aaaaaaaaaaaaaaa--------gaa-------acacatatgacagcaagtgtcagggaggacctggggaaaggagaacactcatgcactgccactgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaacagag-----ttaccatatgatccagcaattccac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37454766 268 +  46535552 aaaatgctcgacatcattagccatcagggaaatacaaataaaaaccacaatgaaataacatttcatacccactgggctggctacaatc--aaaaaaacaaaaaacaaaaacacaaa-------acacatatgacagcaactgttagggaggacctggggaaaggagaacactcatgcactgccgctgagaacgtaaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaacagag-----ttaccatatgatccagcaattccac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106662635 253 - 115148730 aaaatgctcaacatcattagccatcagggaaatacaaataaaaaccacaatgaaataacattgcatatccactgggctggctacaatt--aaaaaaaaaca------------aca-------acacacatgacaacaagtgtcagggaggacctggggaaaggagaacactcatgcactgccagtgagaacataaaatggggcagccattttggaaaacagtctgacagttccttaaaaggttaaacagag-----ttac---atgatccagcaattccac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86965214 272 +  95678458 aaaatgctcaacatcattagccatcaaggaaatacaaataaaaaccacaatcaaataacatttcatacccactgggctggctacaattaaaaaaaaaaaaaaaacaca-----aaaaacacacacacacatgaagtcaagtgtcagggaggagctggagaaagaagaaccctcatgcactgccggtgagaatgtcaaacagggcagccactttggaaaacagtctgacaattccttaaaaggttaaacagag-----ttaccacatgatccagcaattccac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622122 270 -  96509753 aaaatgctcaacatcattagccatcaaggaaatacaaataaaaaccacaatcaaataacatttcatacccactgggctggctacaatt--aaaaaaaaaaaaaacaca-----aaaaacacacacacacatgaagtcaagtgtcagggaggagctggagaaagaagaaccctcatgcactgccggtgagaatgtaaaacggggcagccactttggaaaacagtctgacaattccttaaaaggttaaacagag-----ttaccacatgatccagcaattccac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82450496 273 +  90941950 aaaatgctcaacatcattagccatcaaggaaatacaaataaaaaccacgaTCAAATAACATTTCATACTCACTGGGCtggctacaatt--aaaaaaaaaaaacacacacac--acacacacacacacacatgaagtCAAGTGTCAGGGAGGAGCTGGAGAAAGGAGAATCCTCATGCACTGCCGGTGAGAATGTAAAACGgggcagccactttggaaaacagtctgacaaTTCCTTAAAAGGTTACACAGag-----ttaccacatgatccagcaattccac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24710927 268 +  33263144 aaaatgctcaacatcattagccatcaaggaaatacaaataaaaaccacaatctaataacatttcatacccactgggctggctacaatt--aaaaaaaacaaaaaca-------aaaaacacacacacaaatgaagtcaagtgtcagggaggagttggagaaagaagaatcctcatgcactgccggtgagaatgtaaaacggggcagtcactttggaaaacagtctgacaattccttaaaaggttaaacagag-----ttaccacatgatccagcaattccac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1960284 254 -   2117846 aaaatgctcaacattattagccatcagggaaatacaaataaaaacaacaatgaaataccatttctaacccactgggttggctac-atc--aaaaaaacaacac----------aaa-------ac---catgagagcaagcatcagggaggatctggggaaaggatatccctcatgcacttcccgtgggaatgtcaaatggggcagccactttggaaaacagtctggcagttccttaaaatgttacacagag-----ttaccatatgatccagcaattcttc
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82824422 232 + 104043685 aagatgttcaacatcatt-------aaagaagaacaaaaccaaactacaacaatatagcatctcacactcgctgggatgtctacagtg--ataataa----------------aga------------cttgtaagtatgt-ttggtaaggatactgaaaaattggaatcctaatacattgttagtgggaatgcaaaat-gtgtatatattttggaaaactatatggctattcctctaaaggttaagca--------ttatcatatg---taactgttctac
i mm10.chr15                C 0 I 221
s canFam3.chr10              46095299 245 -  69331447 aaaatgtttgacatcattagccatcagggaaatgc---tcaaaatcacggggagatgccgcttcatactcactgggatggctagaata--c----------------------aac-------aggcaggtaacaacaagggtcagtgaggatatggagaaactgaagcccttatatactgctgg-aaggatggaaaatgattcagccactctggaaaa--gtctgaatgtccttccaaaggttaaatgtagaggtactaccatatgattcagtaattccac
i canFam3.chr10             I 1645 C 0

a score=574228.000000
s hg38.chr22_GL383582v2_alt     89393 191 +    162811 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctatagcagcattattcataacagtcaaaaagtgg-aagtaacccaaatgtacagc-----aa---------------------------------------------AGCCCACAGAGATAGAAAGGATTGAGTC-CAACAGAGCTTAAAGGGAAAAAAAAA--------------------------TCATAA-------------------------------aaatttaaaaaa--------------------
s panTro4.chr22              40913471 194 +  49737984 tcccaggtacacatccaagagaacggaaaaca-tgttcacacaaatgcttgcatgggaatgttctatagcagcattattcataacagtcaaaaagtgg-aagtaacccaaatgtacagc-----aa---------------------------------------------AGCCCACAGAGATAGAAAGGATTGAGTC-CAACAAAGCTTAAAGGaaaaaaaaaaaaa-----------------------tcataa-------------------------------aaatttaaaaaa--------------------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37455034 191 +  46535552 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctatagcatcattattcataacagtcaaaaagtgg-aagtaacccaaatgtacagc-----aa---------------------------------------------AGTCCACAGAGATAGAAAGGATTGAGTC-CAACAGAGCTTAAAGGAAAAAAaaac--------------------------tcacaa-------------------------------aaatttaaaaaa--------------------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106662888 193 - 115148730 tcccaggtacacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctgtagcagcattattcataacagtgaaaaagtgg-aagtaacccaaatgtacagc-----aa---------------------------------------------AGTCCACAGAGATAGAAAGGATTGAGTC-CAACAGAGCTTAAAGGAAAAAAAAAA-AA-----------------------TCATAA-------------------------------ATATTTAAAAAA--------------------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86965486 193 +  95678458 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagc-----aa---------------------------------------------AGTCCACAGAGATAGAAAGGATTGGGTC-CAACAGAGCTTAAAGGAAAAAAAAaa-aa-----------------------tcataa-------------------------------aaattttaaaaa--------------------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622392 193 -  96509753 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagc-----aa---------------------------------------------AGTCCACAGAGATAGAAAGGATTGGGTC-CAACAGAGCTTAAAGGAAAAAAAAaa-aa-----------------------tcataa-------------------------------aaattttaaaaa--------------------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82450769 188 +  90941950 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgCTTGCATGTGAATGTtccacagcagcattattcataattgtcaaaaagTGG-AAGTAACCCAAATACACAGC-----AA---------------------------------------------AGTCCACAGAGATAGAAAGGATTGGGTC-CAACAgagcttaaagg-----aaaaa-aa-----------------------tcataa-------------------------------aaattttaaaaa--------------------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24711195 193 +  33263144 tcccaggtatacatccaagagaactgaaaaca-tgttcacacaaatgcttgcatgtgaatgttctacagcagcattattcataatagtcaaaaagtgg-aagtaacccaaatacacagc-----aa---------------------------------------------AGTCCACAGAGATAGAAAGGACTGGGTC-CAACAGAGCTTAAAGGAAAAAAAAaa-aa-----------------------tcataa-------------------------------aaattttaaaaa--------------------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1960538 198 -   2117846 tcccaggtatacatccaagagaacagaaaaca-tgttcatacaaatgcttgtatgtgaatgctctatagcagcattattcataatagtcaaaaagtag-aaataacccaaatgtacagcaCAGGAA---------------------------------------------AGTCCACAGAGATAGAAAGGATTGAGTC-CAACAGAGCTTCAAGGAAAAAAAAaa-aa-----------------------ttgtaa-------------------------------aaatttataaaa--------------------
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46095544 305 -  69331447 tcctaggt-tacatctaagacaattgaagatattgtctatgtaga------cttgtgagtgttc-acagcaacttttcccataataataaaaaagtggaaaatcatctaaacgtatatc-----aattgatgaacgataagtaaaatgtggcttatccttaagacattgtttggcaataaagat--gaagtattgatacacatcacaacatggagaaaccgggaaa-aacacaacactaagtgaagacgttgtcataaagagcacatattgtatgattccacttacatgaaatgtccagaataggcaaatccatcaagata
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82824654 221 + 104043685 I

a score=10505.000000
s hg38.chr22_GL383582v2_alt     89584 2 +    162811 ga
s panTro4.chr22              40913665 2 +  49737984 ga
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37455225 2 +  46535552 ga
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106663081 2 - 115148730 GA
i nomLeu3.chr7b             C 0 M 100
s rheMac3.chr10              86965679 2 +  95678458 ga
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622585 2 -  96509753 ga
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82450957 2 +  90941950 ga
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24711388 2 +  33263144 ga
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1960736 2 -   2117846 ga
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82824875 2 + 104043685 ga
i mm10.chr15                I 221 C 0
s canFam3.chr10              46095849 2 -  69331447 ga
i canFam3.chr10             C 0 C 0

a score=1065162.000000
s hg38.chr22_GL383582v2_alt     89586 429 +    162811  
s panTro4.chr22              40913667 424 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37455227 399 +  46535552  
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86965681 395 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622587 395 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82450959 386 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24711390 395 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1960738 371 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82824877 571 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46095851 567 -  69331447  
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106663083 100 - 115148730 M

a score=3157232.000000
s hg38.chr22_GL383582v2_alt     90015 803 +    162811  
s panTro4.chr22              40914091 803 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37455626 806 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106663183 806 - 115148730  
i nomLeu3.chr7b             M 100 C 0
s rheMac3.chr10              86966076 807 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87622982 807 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82451345 807 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24711785 810 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1961109 801 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82825448 768 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46096418 772 -  69331447  
i canFam3.chr10             C 0 I 167

a score=1856486.000000
s hg38.chr22_GL383582v2_alt     90818 560 +    162811  
s panTro4.chr22              40914894 560 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37456432 564 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106663989 564 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86966883 563 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87623789 564 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82452152 564 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24712595 564 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1961910 522 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82826216 443 + 104043685  
i mm10.chr15                C 0 C 0
s canFam3.chr10              46097357 632 -  69331447  
i canFam3.chr10             I 167 I 44

a score=21419.000000
s hg38.chr22_GL383582v2_alt     91378  9 +    162811 tttt------gagat
s panTro4.chr22              40915454  9 +  49737984 tttt------gagat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37456996  9 +  46535552 tttt------gagat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106664553  9 - 115148730 ttct------gagag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86967446  9 +  95678458 tttt------gagat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87624353  9 -  96509753 tttt------gagat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82452716  9 +  90941950 tttt------gagat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713159  9 +  33263144 tttt------gagat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1962432 15 -   2117846 tttttttcccgagac
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82826659  9 + 104043685 ATAC------AAGGT
i mm10.chr15                C 0 I 326
e canFam3.chr10              46097989 44 -  69331447 I

a score=760248.000000
s hg38.chr22_GL383582v2_alt     91387 264 +    162811 ggagtcttgctttgtcgcccaggctggagtgcagtagcgcaatcttggctcactgcaacctctgcctcccagtttcaagccattctcctgcctca-gcctcctgagtagctgggattacaggcgtatgccaccacgccaggctaatttttgtatttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacct---------------------------------------------------caTCGCATCTGGCCTCCTGCTGCCACTTTCTTACTCAAGAGGCCCGAAGATATGG
s panTro4.chr22              40915463 264 +  49737984 ggagtcttgctttgtcgcccaggctggaatgcagtagcgcaatcttggctcactgcaacctctgcctcccagtttcaagccattctcctgcctca-gcctcctgagtagctgggattacaggcatatgccaccacgccaggctaatttttgtatttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacct---------------------------------------------------caTCGCATCTGGCCTCCTGCTGCCACTTTCTTACTCAAGAAGCCCGAAGACATGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37457005 273 +  46535552 ggagtcttgctttgtcgcccaggctggagtgcagtagcgcaatcttggctcactgcaacctctgcctcccggtttcaagcgattctcctgcctca-gcctcctgagtagctgggattacaggcgtgtgccaccacgccaagctaatttttgtatttttagtagagatggggttttg-catattggccaagctgatctcaaactcctgacctcaag------------------------------------------tgagccaccgcacccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCCAAAGATATGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106664562 265 - 115148730 ggagtcttgctttgtcgcccacgctggagtgcagtagcgcaatcttggctcactgcaacctctgcctcccggtttcaagcgattctcctgcctca-gcctcctgagtagctaggattacaggcatgtgccaccacgccaggata--------atttttagtagagatggggttttg-catattggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccgcacccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCCGAAGATATGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86967455 274 +  95678458 ggagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatggggttttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccaccaccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCCGAAGATATGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87624362 274 -  96509753 ggagtcttgctttgttgcccaggctggagtgcagtggcgcaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcctggctaatttttgtatttttagtagagatggggttttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccaccaccggcctccTGCTGCCACTTTCTTACTCAAGGAGCCCGAAGATATGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82452725 274 +  90941950 ggagtcttgctttgttgcccaggctggagtgcagtggcgctatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctcaggcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatggggttttg-catgttgcccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccacCACCGGCCTCCTGCTGCCACTTTCTTACTCAAGGAGCCCGAAGATATGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713168 273 +  33263144 ggagtcttgctttgttgcccaggctggagtgcagtggcacaatcttggctcccttcaacctctgcctcctggtttcaagcgattctcctgcctca-gcctcctgaggagttgggattacaggcatgtgctaccacgcccggctaatttttgtatttttagtagagatgggattttg-catgttggccaagctggtctcaaactcctgacctcaag------------------------------------------tgagccaccacacccggccttcTGCTGACACTTTCTTACTCAAGGAGCCCGAAGATATGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1962447 307 -   2117846 agaatcttgctctgtcccccaggctggagtgcaatggcacgatcttggctcactgctacctctgcctcccgggttcaagttattctcctgcctca-gcctcctgagtagctgggattacaggtgtgcaccaccacacctggctaatttttgtatttttagtagagatagggttttgccatgttggccaggctggtctcaaactcctgacctcatgatctgctcacctcagccttccaaagttctgggattacaggcatgaaccactatgcccagccTCTTGCTGTCACTTTCTTACTCAGGAGGCCCT---------
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82826668 326 + 104043685 I
e canFam3.chr10              46097989  44 -  69331447 I

a score=13028.000000
s hg38.chr22_GL383582v2_alt     91651 4 +    162811 CCCT
s panTro4.chr22              40915727 4 +  49737984 CCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37457278 4 +  46535552 CCCT
i ponAbe2.chr22             C 0 M 289
s nomLeu3.chr7b             106664827 4 - 115148730 CCCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86967729 4 +  95678458 CCCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87624636 4 -  96509753 CCCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82452999 4 +  90941950 CCCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713441 4 +  33263144 CCCT
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46098033 4 -  69331447 CCTT
i canFam3.chr10             I 44 C 0
e mm10.chr15                 82826668 326 + 104043685 I
e calJac3.chrUn_GL286373      1962754 0 -   2117846 C

a score=277433.000000
s hg38.chr22_GL383582v2_alt     91655 99 +    162811 CCCTACCCTGGGGGATGAATCAcagtgagtggtggccatttaggaatgggtatggtcaagcatttctggtaggaaagtctgcaggaaaaagggcttctg
s panTro4.chr22              40915731 99 +  49737984 CCCTACCCTGGGGGATGAATCAcagtgagtggtggccatttaggaatgggtatggtcaagcatttctggtaggaaagtctgcaggaaaaagggcttctg
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106664831 99 - 115148730 CCCTACCCTGGGGGATGAATCACAGTGAGTGGTGGCCATTAAGGAATGGGTATGGTCAAGAATTTCTGGTAGCAAAGTCTGCAGGAGAAAGGGCTTCTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86967733 99 +  95678458 CCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATAATCAAGCATTTCTGGTAGGAAAGTCTGCAGGAAAAAGGGCTTCTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87624640 99 -  96509753 CCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATAATCAAGCATTTCTGGTAGGAAAGTCTGCAGGAAAAAGGGCTTCTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453003 99 +  90941950 CCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATAATCAAGCATTTCTGGTAGGAAAGTCTGCAGGAAAAAGGGCTTCTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713445 99 +  33263144 CCCTACCCCGGGGAATGAATCACAGTGAGTGGTGGCCATTTAGGAATGGGTATGATCAAGCATTTCTGGTAGGAAAGTCTGCAAGAAAAAGGGCTTCTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1962754 98 -   2117846 CCCCACCCTGGGGGATGAATCACAGTGAGTGGTGGCCATTTAGAAATGGGTATG-TCAAGCATTTCTGGTAGGAAAACCTGCAAGAAAAAAGGCTTTTG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46098037 94 -  69331447 CCCCACCCTGGGGGGTGAATCTCAATGAGTGATGGCTGTTTACAAATGGGTGTAG-CAAGCGTTCC----AGGAATGGCAGCAGgttaaagaacttctg
i canFam3.chr10             C 0 I 3
e mm10.chr15                 82826668 326 + 104043685 I
e ponAbe2.chr22              37457282 289 +  46535552 M

a score=40831.000000
s hg38.chr22_GL383582v2_alt     91754 48 +    162811 aaaacattttgcact-ccccccaacc---tttttttttttttttttaatata
s panTro4.chr22              40915830 45 +  49737984 aaaacattttgcact-ccccccaacc------ttttttttttttttaatata
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106664930 52 - 115148730 AAAACATTTTGCACTCCCCCCCAACCtttttttttttttttttttttccata
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86967832 36 +  95678458 AAAACATTTTGCACT-CCCACCACCt------tttt-------ttttata--
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87624739 36 -  96509753 AAAACATTTTGCACT-CCCACCATCt------tttt-------ttttata--
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453102 37 +  90941950 AAAACATTTTGCACT-CCCCccacct------tttt------cttttata--
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713544 39 +  33263144 AAAACATTTTGCACT-CCCCCTACCt------tttt----tttttttata--
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1962852 39 -   2117846 CCAACATTTCACACC-ACTCTC--Ct------ttttctctttttttaa----
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82826668 326 + 104043685 I
e canFam3.chr10              46098131  3 -  69331447 I
e ponAbe2.chr22              37457282 289 +  46535552 M

a score=773765.000000
s hg38.chr22_GL383582v2_alt     91802 274 +    162811 ttttgagacgatgtcttgctctgtcacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccaggctcaggtgattctcctgacctcagcctcccgagtagctgagactacagggtgtgtgctaccacatc--cagc---tttttcaaaaaat------gtttttgtagagacagggtctcactatgttgcccaggctgtccttgaactcctgggctcaagcaattctcccatctcagcctccaaaagtgctaagattacaagcatga
s panTro4.chr22              40915875 274 +  49737984 ttttgagacgatgtcttgctctgtcacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccaggctcaggtgattctcctgacctcagcctcccgagtagctgagactacagggtgtgtgctaccacatc--cagc---tttttcaaaaaat------gtttttgtagagacagggtctcactatgttgcccaggctgtccttgaactcctgggctcaagcaattctcccatctcagcctccaaaagtgctaagattacaagcatga
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37457571 273 +  46535552 ttttgagacgatgtcttgctctgtcccccaggatggagtgcagtggcaccatcatggctcactgtagtctctacctcccgggctcaggtgattctccc-acctcagcctcccgagtagctgagactacagggtgtgtgctaccatatc--cagc---tttttcaaaaaat------gtttttgtagagatggggtctcactgtgttgcctgggctgttcttgaactcctgggctcaagtaattctcccatctcagcctccaaaagtgctaggattacaagtatga
i ponAbe2.chr22             M 289 C 0
s nomLeu3.chr7b             106664982 275 - 115148730 ttttgagacgatgtcttgctctgccacccaggatggagtgcagtggcacaatcatggctcactgcagtctctacctcccgggctcaggtgattctccc-acctcagcctcccgagtagctgagactatagggtgtgtgctaccacatccacagc---ttttttaaaaaat------gtttttgtagagattgggtgtcactatgttgcccgggctgttcttgaactcctgggctcaagcggttctcccatctcagcctccaaaagtgctaggattataagtatga
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86967868 266 +  95678458 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagctagttttttaaaaaaa------gtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agTATGA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87624775 266 -  96509753 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctactacatc--cagctagtttttaaaaaaaa------gtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agTATGA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453139 266 +  90941950 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctcctgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgTGTGCTACtacatc--cagctagtttttttaaaaaa------gtttttgtagagatggggtctcactatgttgcctaggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtcCAAAAGTGCT---------AGTATGA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713583 266 +  33263144 ttttgagacaatgtcttgctctgtcacccaggctggagtgcagtggcacaatcatggctcactgcagcctctacctgccgggctcaggtgattctccc-acctcagcct-ccgagtagctgagactacagggtgtgtgctaccacatc--cagctagttttttaaaaaat------gtttttgtagagatggggtctcactatgttgcccgggctgttcttgaactcctgggttcaagcaattctcccatctcagtgtccaaaagtgct---------agtatGA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1962891 281 -   2117846 atttaagaaaatgtcttgctctgtcccccaggctgtagtgcagtggcataatcatggctcactgcagcctctacctcccaggctcaggtgattctccc-acctcagcctcttgagtagctgagactaca-ggtgtatgctaccacatc--cagctaatttaaaaaaaaaaaaaaacgtttttgtagagatggggtcacactattttgcctgggctgttcttgaactcctcagctcaagcaattctcccatcccagcctccaaatgtgctaggattacaagtatga
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82826668 326 + 104043685 I
e canFam3.chr10              46098131   3 -  69331447 I

a score=456493.000000
s hg38.chr22_GL383582v2_alt     92076 137 +    162811 aagtttca-ccctctcaaaaagagacaagagggaggaacaggtaatttttcttgcgcagcctctgtgaggattagacagtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc-
s panTro4.chr22              40916149 137 +  49737984 aagtttca-ccctctcaaaaagagacaagagggaggaacaggtaatttttcttgcgcagcctctgtgaggattagacagtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37457844 137 +  46535552 AAGTTTCA-CCCTCTCAAAAAGAGACAAGAGGGAGGAACAGGTAATTTTTCTTGCGCAGCCTCTGTGAGGACTAGACAGTGggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccagc-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106665257 137 - 115148730 AAGtttca-ccctctcaaaaagagacaagagggaggaacaggtaatttttcttgctcagcctctgtgaggactagacggtgggatctgtggcagccacagtatcaccatgaggggacagccctgaagacaaagccaga-
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968134 135 +  95678458 AAGTTTCA-CCCTCTCAAAAAGAGACAACAGGGAGGAACAGGGAATTTT--CTGCTCAGCCACtgtgagggctagatggtgggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaagccagt-
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625041 135 -  96509753 AAGTTTCA-CCCTCTCAAAAAGAGACAACAGGGAGGAACAGGGAATTTT--CTGCTCAGCCACTGTGAGGGCTAGACGGTGggatctgtggcagccacagtatcaccataaggggacagccctgaagacaaagccagt-
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453405 135 +  90941950 AAGTTTCA-CCCTCTCAAAAAGAGACAACAGGGAGGAACAGGTAATTTT--CTGCTCAGCCTCTGTGAGGACTAGACGGTGGGATCTGTGGCAGCCACAGTATCACCATAAGGGGACAGCCCTGAAGACAAAGCCAGT-
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713849 135 +  33263144 AAGTTTCA-CCCTCTCAAAAAGAGACAACAGGGAGGAACAGGTAATTTT--CTGCTCAGCCTCtgtgaggactagacggtgggatctgtggcagccacagtatcaccataaggggacagccctaaagacaaagccagt-
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1963172 136 -   2117846 AAGtttca-ccctctcaaagagagagaatagggaggaacaggtaatctt-cttgcctggcctctatgaggactagacagtgggatctgtagcagccactgtatcgccacgaggggacagccctaaagacaaagtcagc-
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46098134 136 -  69331447 aagtttcacccctcctcaaaagggacaagaggcaggaataggctgtctg-atcactcagc--ctattagggtgggatggcgagatctgttgtaatcctcttatcaccatgaggggacagctctgaagacaaagcccaag
i canFam3.chr10             I 3 C 0
e mm10.chr15                 82826668 326 + 104043685 I

a score=413474.000000
s hg38.chr22_GL383582v2_alt     92213 119 +    162811 ctgctgaggacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttACAGGAA----------ACTTGGG-
s panTro4.chr22              40916286 119 +  49737984 ctgctgaggacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttACAGGAA----------ACTTGGG-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37457981 119 +  46535552 ctgctgaggacagacgagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcacccaaacccaggac----------caggtc-----------------------------------------------acctctagcc-------------ttgttACAGGAA----------ACTTGGG-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106665394 119 - 115148730 ctgctgaagacagaagagtggcaagatggagag-acctgggcctaccatgacactgtcaagcactaaatcaccgaaacccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttACAAGAA----------ACTGGGG-
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968269 119 +  95678458 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaagac----------caagcc-----------------------------------------------acctctagcc-------------ttgttACAGGAA----------ACCTGGG-
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625176 119 -  96509753 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaagac----------caagcc-----------------------------------------------acctctagcc-------------ttgttACAGGAA----------ACCTGGG-
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453540 119 +  90941950 CTGCTGAGGACAGAAGAGTGGCAAGATGGAGAG-ACCTGGACCTACCATGACACTGTCAAGCACTAAATCACCCAAACCCAGGAC----------CAAGCC-----------------------------------------------ACCTCTAGCC-------------TTGTTACAGGAA----------ACCTGGG-
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24713984 119 +  33263144 ctgctgaggacagaagagtggcaagatggagag-acctggacctaccatgacactgtcaagcactaaatcacccaaacccaggac----------cgagcc-----------------------------------------------acctctagcc-------------ttgttACAGGAA----------ACTTGGG-
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1963308 115 -   2117846 ctgctgaggacagaacagtggcaagatgaagag-acctggacctatcatgacactgtcaagcactaaatcaccaaaccccaggac----------caggcc-----------------------------------------------acctctagcc-------------ttgttaC----A----------ACTTGGG-
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82826994 114 + 104043685 CTCTTGACTACAGCAGAGTGGGAAGATG-AGAG-ACTTAGACTTATTGTGACACTCTTGAGTACTAACCCAACCAATCCAAGAAT----------TG---C-----------------------------------------------ATATCCAGAC-------------TT-TTACAGGAC----------AACAGAG-
i mm10.chr15                I 326 I 143
s canFam3.chr10              46098270 201 -  69331447 ctgctgaagagagcagagtgacaggacagagggaacctgggccctctgtggcaaggctgaggaccacattagccaggtccaggacaccccatcttcaaactgttaagggagagaacaTTAAAAAAAAAAATCACTTAAAAATTTTTTAACCTGCAGTCAAAAAGATACTGGTTGACACAGGAAGGGACCTACTAGTTGAGG
i canFam3.chr10             C 0 C 0

a score=211422.000000
s hg38.chr22_GL383582v2_alt     92332 59 +    162811 TGCTGCTGTAGAAGggttaagtatgcatgctctggaacctaaataactgcctggtaagt
s panTro4.chr22              40916405 59 +  49737984 TGCTGCTGTAGAAGggttaagtatgcatgctctggaacctaaataactgcctggtaagt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458100 59 +  46535552 TGCTGCTGTAGAAGggttaagtatgcatgctctggaacctaaataactgcctggtaagt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106665513 59 - 115148730 TGCTGCTGTAGAAGggttaagtatgcatgctctggaacctaaataactacctggtaagt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968388 56 +  95678458 G---GCTGTAGAAGggttaagtatgcatgctctggaacctaaataactgcctggtaagt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625295 56 -  96509753 G---GCTGTAGAAGggttaagtatgcatgctctggaacctaaataactgcctggtaagt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453659 59 +  90941950 GGCTGCTGTAGAAGGGTTAAGTATGCATGCTCTGGAACCTAAATAACTGCCTGGTAAGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714103 59 +  33263144 GGCTGCTGTAGAAGggttaagtatgcatgctctggaacctaaataactgcctggtaagt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1963423 59 -   2117846 CGCTGCTGTAGAAAggttaagtatgcatgctctggaacctaattaactgcttggtaagt
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46098471 58 -  69331447 TACTGCTgtataa-ggtcaagtgtataggctctggaacctaaataactccctggtaaat
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82827108 143 + 104043685 I

a score=1184269.000000
s hg38.chr22_GL383582v2_alt     92391 332 +    162811 ggctcc----actttctagctctgccttcttggccaaactcctaacctctgt-tcctcaacctacagacgtggg--------actaataatagcactcacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaacagtggctgggtcaaaagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACATATGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCATCACCATCCCGGTTTACAA--G-AGGAAAGAGAAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAAC--------------------------TCCA----------------------------------------
s panTro4.chr22              40916464 332 +  49737984 ggctcc----actttctagctctgccttcttggccaaactcctaacctctgt-tcctcaacctacagacgtggg--------actaataatagcactcacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaacagtggctgggtcaaaagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACATACGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCATCACCATCCCGGTTTACAA--G-AGGAAAGAGAAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAAC--------------------------TCCA----------------------------------------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458159 332 +  46535552 ggctcc----actttctagctctgccttcttggccaaactcctaacctttgt-tcctcaacctacagacatggg--------actaataatagcactcacctcacagaaatgtcataagggttaaatgaattaattcaggcttaaaatggtggctgggtcaaaagtgctaagtaaatgtGACCCAAGATGAACAAGTGTCAGACATATGCTAGATAATCTACAAAGACCATCTCATGAA-AAGCAACC-ACACAGCAGGCCTCGTCACCATCCCAGTTTACAA--G-AGGAAAGAGAAGACATGGAGCTTAGATCTGAACAACGTCCATTTGCTTCCTACCTCAAC--------------------------CCCA----------------------------------------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106665572 332 - 115148730 ggctcc----actttctagctctgccttcttggccaaactcctaacctttgt-tcctcaatctacagacgtggg--------actaataatagcactcacctcatagaaacgtcataagggttaaatgaattaattcaggcttaaaatggtggctgggtcaaaagtgctaagtaaatgtGACCCAAGATGACCACGTGTCAGACATATGCTAGATAATCTAAAAAGACCATCTCATGAA-AAGCAAAC-ACATAGCAGGCCTCGTCACCATCCCAGTTTACAA--G-AGGAAAGAGAAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAAC--------------------------CCCA----------------------------------------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968444 332 +  95678458 ggctcc----actttctagttctgccttcttggccaaattcctaacctttgt-tcctcaatctacagatgtggg--------actaataatggcactcacctcatagaaatgtcgtaagggttaaatgaattaattcaggcttaaaatggtggctgggtcaaaagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATCCCAGTTTACAA--G-AGGAAAGAGAAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAAC--------------------------CCCA----------------------------------------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625351 332 -  96509753 ggctcc----actttctagttctgccttcttggccaaattcctaacctttgt-tcctcaatctacagatgtggg--------actaataatggcactcacctcatagaaatgtcgtaagggttaaatgaattaattcaggcttaaaatggtggctgggtcaaaagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATCCCAGTTTACAA--G-AGGAAAGAGAAGACATGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAAC--------------------------CCCA----------------------------------------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82453718 332 +  90941950 GGCTCC----ACTTTCTAGTTCTGCCTTCTTGGCCAAATTCCTAACCTTTGT-TCCTCAATCTACAGATGTGGG--------ACTAATAATGGCACTCACCTCATAGAAATGTCATAagggttaaatgaattaattcaggCTTAAAATGGTGGCTGGGTCAAAAGTGCTAAGTAAATGTGACCCAAGATGACCATGTGTCAGACACACGCTAGATAATCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATCCCAGTTtacaa--g-aggaaagagaagacatGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAAC--------------------------CCCA----------------------------------------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714162 332 +  33263144 ggctcc----actttctagttctgccttcttggccaaattcctaacctttgt-tcctcaatctacagatgtggg--------actaataatgccactcacctcatagaaatgtcataagggttaaatgaattaattcaggcttaaaatggtgactgggtcaaaagtgctaagtaaatgtGACCCAAGATGACCATGTGTCAGACACATGCTAGATAACCTACAAAGACCACCTCATGAA-AAGCAACC-ACACAGCAGGCCTTGTCACCATCCCAGTTTACAA--G-AGCAAAGAGAAGACGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTAATTCAAC--------------------------CCCA----------------------------------------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1963482 329 -   2117846 ggctcc----actttctagctatgccttcgtggccaaattcctaacctttat-tcctcaacctgcaaatgtggg--------gctaataatagcactcacctcatagaaatgtcattagggttaaatgcattaattcaggcttaaaacagtggccaggtc-aaagtgttaagtaaatgtGACCCAAGGTGACCACGTGTCAGACACATGCTAGATAATCTGCAAAGACCATCTCATGAA-AAGCAAC---CATAGTAGGCCTCATCACCATCCCAGTTTACAG--G-AGGAAAGAGAAGATGTGGAGCTTAGATCTGAACAATGTCCATTTGCTTCCTACCTCAAC--------------------------TCCA----------------------------------------
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82827251 322 + 104043685 GACTCT----ACAATCTTACTATGTCTGACCTACCAATTTCCTAACCTTTAT----TGAATCCACACTTAAGGAC-------AGTACAAACAGTGCTCACCTCACAGAAATG--GTCAGTACTGTATGCATCAATCCAAACTTAAAATAGTGGCTGGCTCAGAACCGCTATT---ATGTTACCCAAGATCACTACAGGCCAATGACACTCTACACATGTCCTACAGATCAAAAAGTTAACAATCACCC-ATAAAGT-GGCCTTGTTATCACTC--ATTTACAGATG-AGAACAGAGAAAACAAGGGACTGGAACATGGATA---TCTGTTCCCTTCCTATTTAAAC--------------------------ACCA----------------------------------------
i mm10.chr15                I 143 I 302
s canFam3.chr10              46098529 368 -  69331447 -gctcccactgcttccta--tatgtgttcttgg-cgaatttccaacctttgtttccttaacctgtaaacatgaacctaactaactaattgtactatctacctcacagagatgttgtgagggttcaatgtgtgaatccaggcttaagacagtggctggaccagaagtgctcggtaaatgtGAC----------------------------------------ACAGACCACC-CATGAA-AAGCAACCTGCAGAGCAGGCCTTGTCATCACCTGAGTTTACAG--ACAGGAGAGAGAAACCACCAAGCTCGGATCTGAACAAGGTCCATTTCCTTCCTACCTCAACATGTATCTCTGTCCCCTGCAGGGCTTCTCAATACTCCTTGCCTTGAGCCAGGCCACAGACCACAGGTCCC
i canFam3.chr10             C 0 C 0

a score=560911.000000
s hg38.chr22_GL383582v2_alt     92723 189 +    162811 CAACCT------------GGCAAGC-----------------AGTGTGCAAACTCCACTATGATTAATTT------------------ATAACATTGCATCCAAAGGGGAAAG--ACTCTCAG-GCTGTATTAGGGACTTAGAgaaagatccttaaagacagtttagttcagtgg-tttttgaagtgtggtcccctgg--aacagcagcatcagcaacactcagggacttgtcagaaatgca
s panTro4.chr22              40916796 189 +  49737984 CAACCT------------GGCAAGC-----------------AGTGCACAAACTCCACTATGATTAATTT------------------ATAACATTGCATCCAAAGGGGAAAG--ACTCTCAG-GCTGTATTAGGGACTTAGAGAAAGATCCTTAAAGACAGTTTGGTTcagtgg-tttttgaagtgtggtcccctgg--aacagcagcatcagcaacactcagggacttgtcagaaatgca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458491 185 +  46535552 CAACCT------------GGCAAGC-----------------AGTGCGCAAACTCCACTATGATTAATTT------------------ATAACACTGCATCCAAAGGGGAAAG--ACTCTCAG-GCTGTATTAGGGACTT----AAAGATCCTTAAACACAGTTTAGTTcagtgg-tttttgaagtgtggtcctctgg--aacagcagcatcagcaacactcaaggacttgtcagaaatgca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106665904 189 - 115148730 CAACCT------------GGCAAGC-----------------AGTGCGCAAACTCCACTATGATTAATTT------------------ATAATATTGCATCCAAAGAGGCAAG--ACCCTCAG-GCTGTATTAGGGACTTAGAgaaagatccttaaagacactttcgttcagtgg-tttttgaagtgtggtcctctgg--aacagcagcatcagcaacactcagggacttgtcacaaatgca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968776 189 +  95678458 CAACCT------------GGCAAGC-----------------ATTGCGCGAACTGCACGATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCtcag-ggtatgttagggactcagagaaagatccttaaagacagtttagttcagtgg-tttttgaagtgtggtcctttgg--aacagcagcatcagcaacactcagggacttgtcagaaatgca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625683 189 -  96509753 CAACCT------------GGCAAGC-----------------ATTGCGCGAACTGCACGATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCTCAG-GGTATGTTAGGGACTCAGAgaaagatccttaaagacagtttagttcagtgg-tttttgaagtgtggtcctttgg--aacagcagcatcagcaacactcagggacttgtcagaaatgca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454050 185 +  90941950 CAACCT------------GGCAAGC-----------------ATTGCGCA----GCACGATGATTAATTT------------------ACAACATTGCATCCAAAGGGGAAAG--ACCCTCAG-GGTATGTTAGGGACTCAGAGAAAGATCCTTAAAGACAGTttagttcagtgg-tttttaaagtGTGGTCCTTTGG--AACAGCAGCATCAGCAACACTCAGggacttgtcagaaatgca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714494 189 +  33263144 CAACCT------------GGCAAGC-----------------ATTGCGAGAACTGCACGATGATTAATTT------------------ATGACATTGCATCCAAAGGGGAAAG--ACCCtcag-ggtatgttagggactcagagaaagatccttaaagacagtttagttcagtgg-tttttgaagtgtggtcctctgg--aacagcagcatcagcaacactcagggacttgtcagaaatgca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1963811 190 -   2117846 CAACCT------------GGCAAGC-----------------AGGGTGCC-ACTCCACTATGATTAA-TT------------------ACAACATTGCATCCAAAGGTGAAAGACACCCCCAG-GGTGTATCAGGTCCTTAGAGAAAGATCCTTAAAAACACTTTAGTTcagaggttttttgagatgtggtcctctgaacagcagcagctttagca--actcagggatttgtcagaaatgca
i calJac3.chrUn_GL286373    C 0 I 11
s canFam3.chr10              46098897 233 -  69331447 -AACTTTTGCATAAAGAAAGCAAACTCACCCCTCACCAAGAAATTACATCAATGAAATGAGGCTTGCTTTTTTCAGTTAAAAAGCACAATGAATTTACGTACAGAGGAGAAAA--GCCCTGTGTGGTATACTCGGGCCTCAGGGAAAGGACATTAAAG--AATTTAGTTcagtga-ctctcaaagtgtaatcgt-tgg--accagcaacatcagcatcacctcggaacttggtagaaatgga
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82827573 302 + 104043685 I

a score=17544.000000
s hg38.chr22_GL383582v2_alt     92912 6 +    162811 gttttg
s panTro4.chr22              40916985 6 +  49737984 gttttg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458676 6 +  46535552 gttttg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666093 6 - 115148730 gttttg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968965 6 +  95678458 gttttg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625872 6 -  96509753 gttttg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454235 6 +  90941950 gttttg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714683 6 +  33263144 gttttg
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46099130 6 -  69331447 aatttg
i canFam3.chr10             C 0 I 7719
e mm10.chr15                 82827573 302 + 104043685 I
e calJac3.chrUn_GL286373      1964001 11 -   2117846 I

a score=613196.000000
s hg38.chr22_GL383582v2_alt     92918 261 +    162811 -ttttttgggttatttttgagacagagtctcgttctgtcacccaggctagagtgcagtggcacagtcttggctcactgcaacctccgactcccatgttcaagtgattctcgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttg---tttttttactagagacggggtttcaacatgttggccaggctggtcttgaacttctgacctcaagtgatccacctgccttggcttcccaa
s panTro4.chr22              40916991 261 +  49737984 tttttttgggttatttttgagacagagtctcgttctgtcacccaggctggagtgcagtggcacagtcttggctcactgcaacctccgactgccatgttcaagtgattctcgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttg----ttttttactagagacggggtttcaacatgttggccaggctggtcttgaacttctgacctcaagtgatccacctgccttggcttcccaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458682 262 +  46535552 -ttttttgggttatttttgagacagagtctcgttctgtcacccaggctggagtgcagcgg--cagtcttggctcactgcaacctccgactcccatgctcaagtgattcttgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaactttttgtatttttactactagagacggggtttcaacatgttggccaggctggtcttgaacttctggcctcaagtgatccatctgccttggcttcccaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666099 261 - 115148730 -ttttttgggttatttttgagacagagtctcgttctgtcatccaggctggagcgcagtggcacagtcttggctcactgcaacctccgactcccatgttcaagtgattctcgtgcctcagcttcccaagtagctaggattacaggcatgaaccaccacacctggcaagtgtttg---tatttttactagagacgaggtttcaacatgttggccagactggtcttgaacttctggcctcaagtgatccacctgtcttggcttcccaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86968971 259 +  95678458 -ttttttggattatttttgag--agtgtctcgttctgttgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaatttttg---taatttcactagagacagggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcctcccaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87625878 259 -  96509753 -ttttttggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaatttttg---taatttcactagagacagggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcctcccaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454241 259 +  90941950 -ttttttggattatttttgag--agtgtctcgttctgtcgcccaggctggagcgcagtggcacaaccttggctcactgcaacctccaactcccacgttcaagcgattcttgtgcctcagtttcccaagtagctgggattacaggcatgaaccaccacacctggcaaatttttg---taatttcactagagacagggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgcctcggcctcccaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714689 259 +  33263144 -ttttttggattatttttgag--agtgtctcgttctgtcacccaggctggagcgcagtggcacaatcttggctcactgcaacctccaactcccatgttcaagcgattcttgtgcctcagtttcccaagtaactgggattacaggcatgaaccaccacacctggcaaatttttg---taatttcactagagacggggtttcaacatgttggccaggctggtcttgaacttcttgcctcaagtgatccacctgccttggcctcccaa
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82827573 302 + 104043685 I
e canFam3.chr10              46099136 7719 -  69331447 I
e calJac3.chrUn_GL286373      1964001  11 -   2117846 I

a score=6876.000000
s hg38.chr22_GL383582v2_alt     93179 2 +    162811 ag
s panTro4.chr22              40917252 2 +  49737984 ag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458944 2 +  46535552 ag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666360 2 - 115148730 ag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969230 2 +  95678458 ag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87626137 2 -  96509753 ag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454500 2 +  90941950 ag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714948 2 +  33263144 ag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964012 2 -   2117846 ag
i calJac3.chrUn_GL286373    I 11 C 0
e mm10.chr15                 82827573 302 + 104043685 I
e canFam3.chr10              46099136 7719 -  69331447 I

a score=106146.000000
s hg38.chr22_GL383582v2_alt     93181 35 +    162811 tgctgggattacaggcgtgagccactgtgcttggc
s panTro4.chr22              40917254 35 +  49737984 cgctgggattacaggcgtgagccactgtgcttggc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458946 35 +  46535552 tgctgggattacaggcgtgagccactgcgcttggc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666362 35 - 115148730 tgctgggattacaggcgtgagccactgcgcttggc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969232 35 +  95678458 tgctgggattataggcatgagccaccacacctggc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87626139 35 -  96509753 tgctgggattacaggcatgagccaccacacccggc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454502 35 +  90941950 tgctgggattacaggcatgagccaccacacctggc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714950 35 +  33263144 tgctgggattacaggcgtgagccaccacacctggc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964014 35 -   2117846 tgttgggattacaggcgtgagccagcatacttggc
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82827875 34 + 104043685 TGCAGGGATTATAAGGATTA-TAAGTATGCTTCAC
i mm10.chr15                I 302 C 0
e canFam3.chr10              46099136 7719 -  69331447 I

a score=547268.000000
s hg38.chr22_GL383582v2_alt     93216 154 +    162811 agaaatgcacgcttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattctgatgtacaatgcagtttgaggaccactggtctaa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagacacaatgactg
s panTro4.chr22              40917289 154 +  49737984 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattctgatgtacaatgcagtttgaggaccactgGtctca-ttcaactccccaacttttcagacgcggaaaa-aagaaacccagagagacacaatgactg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37458981 154 +  46535552 agaaatgcacatttttgagccc--------cacctaaatctgtgttgtgag---aaatc----ctccaggctattctgatgcacaatgcagtttgaggaccactgGtctaa-ttcaactccctaacttttcagatgtggaaaa-aagaaactcagagagacacaatgactg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666397 154 - 115148730 agaaatgcacacttttgagccc--------caactaaatctgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagtttgaggaccactggtctaa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagacacaatgactg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969267 154 +  95678458 agaaatgcatacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagtttgaggaccactggtctaa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87626174 154 -  96509753 agaaatgcatacttttaagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgatgcacaatgcagtttgaggaccactggtctaa-ttcaactccccaacttttcagatgcggaaaa-aagaaacccagagagatacaataacAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454537 154 +  90941950 agaaaTGCATACTTTTGAGCCC--------CACCTAAATCTGTGTTGTGAG---AAGTC----CTCCAGGCTATTCTGATGCACAATGCAGTTTGAGGACCACTGGTCTAA-TTTAACTCCCCAACTTTTCAGATGCggaaaa-aagaaacccagagagATACAATAACAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24714985 154 +  33263144 agaaatgcacacttttgagccc--------cacctaaatccgtgttgtgag---aagtc----ctccaggctattctgacgcacaatgcagtttgaagaccactggtctaa-ttcaactccccaacttttcagatgtggaaaa-aagaaacccagagagatacaatgacAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964049 154 -   2117846 agaaatgcacacttttgagccc--------cacctaaatctgtgttgtgag---aagtc----ctccaggctattcaggtgtacaatgcagtttcgggaccactgGTGtaa-ttcaactccccagcttttcagatgcggaaaa-aagaaacccaaagagacacaatgactg
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82827909 149 + 104043685 ACAACT--ATAGTGTGGAGACCAGAAACAGCACGAAGAGCTAAACAGGAAGGGCAAATCCTCACTCTAAGTCATTGTAATACACAATGCAGATTCAGAACCATTAG-------TTAACTCCTTAACTT-----------AAAA-CACAGACCCATGAATTTA-AAGGACTG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46106855 153 -  69331447 agaagTGCAAGTTCTCAAAGCC--------CCTCTcaatctgtgccgtaac---aagt-----gtctaggcaattctgatgcatgacacaatttgagaaccattgGTTCAATTTCAACTCTATAATTTTTTAGGTGAGAAAAACAAAAGACCCA--GAGATGCAATAATTG
i canFam3.chr10             I 7719 I 30

a score=246946.000000
s hg38.chr22_GL383582v2_alt     93370  94 +    162811 gg-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAGAGCAATC---AGATCTTGGG-------------------------AT-A-TGGTAGGCAGa
s panTro4.chr22              40917443  94 +  49737984 gg-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAGAGCAATC---AGATCTTGGG-------------------------AT-A-TGGTAGGCAGa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459135  94 +  46535552 gc-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAGAGTAATC---AGATCTTAGG-------------------------AT-A-TGGTAGGcaga
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666551  95 - 115148730 gc-tgagctaggattactggattactggtttcctgagagccattcagtg---------------ttctgtct--cctACAGAGCAATC---AGATCTTGTG-------------------------AT-ATTGGTAGGCAGa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969421  86 +  95678458 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAGAGCAATC---AGATCTTGGG-------------------------AT-A-CGGTAGGTAGa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87626328  86 -  96509753 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAGAGCAATC---AGATCTTGGG-------------------------AT-A-CGGTAGGTAGA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454691  86 +  90941950 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAGAGCAATC---AGATCTTGGG-------------------------AT-A-CGGTAGGTAGA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24715139  86 +  33263144 AC-TGAGCTA--------GGATTACTGGTTTCCTGAGAGCCATTTAGTG---------------TTCTGTCT--CCTATAGAGCAATC---AGATCTTGGG-------------------------AT-A-CGGTAGGTAga
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964203 110 -   2117846 acttgagctaggattactggattattggtttcctgagagccattcagtgctctctccactATATTTCTGTCT--CCTATAGAGCAGTC---AGATCTTGGG-------------------------GT-A-TGGTATGAAGa
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82828058 126 + 104043685 GC-TA-------------GAATTTAT-GTTTTCTGAGAGTTATTTAGTGTTTTCTCTACTAGACTTCTGTATACCCTATACAGCAAACTAAAGATTATGGGTGTGAAAGCAGAACTGAGGCCTCCAATGA-TGTTCATCTGA
i mm10.chr15                C 0 C 0
e canFam3.chr10              46107008  30 -  69331447 I

a score=789057.000000
s hg38.chr22_GL383582v2_alt     93464 244 +    162811 atcccaagaacctgtgatcttatatacaaaatcaactttgtggatgagatt-aagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggcccataaaagcaaacgattcccccccagagggagttacagttgtcagcttcagggagacctgatgatttgccagcagggtcataggtg-caatgctgctggcctggaagacgggagaaggga---cagg--
s panTro4.chr22              40917537 243 +  49737984 atcccgagaacctgtgatcttatatacaaaatcaactttgtggatgagatt-aagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggtccataaaagcaaacgatt-ccccccagagggagttacagttgtcagcttcagggagacctgatgatttgccagcagggtcataggtg-caatgctgctggcctggaagatgggagaaggga---cagg--
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459229 243 +  46535552 atcctgagaacctgtgatcttatatataaaatcaactttgtgggtgagatt-aagtcaaggaccttgagatgggaagaatatgctaggttac---ccagg--tgggcccaatctaatcacacaggtccataatagcaaatgact-tcccccagagggagttagagttgtcagcttcagggagacctgatgatttggcagcagggtcataggtg-caatgctgctggcctcgaagatgggagaaggga---cagg--
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666646 242 - 115148730 atcccaagaacctgtgatcttatatacaaaatcaactttgtggatgagatt-aagtcaaggaccttgagatgggaagaatatgctaggttat---ccagg--tgggcccaatctaatcacacaggtccataaaagcaaatgact--cccctagagggagttagagttgtcagcttcagggagacctgatgatttggcagcaaggtaataggtg-caatgctgctggcctcgaagatgggagaaggga---cagg--
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969507 240 +  95678458 atcctgagaacctgtgatcttatatacaaaatgaactttgcggatgagatt------aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgact-ccccccagagggagttaaagttgtcagcttcagggagatctgatgatttggcagcagggtcataggtg-caatgctgctggccttgaagatgggagaagggg---cAGG--
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87626414 240 -  96509753 ATcctgagaacctgtgatcttatatacaaaatgaactttgcggatgagatt------aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgact-ccccccagagggagttaaagttgtcagcttcagggagatctgatgatttggcagcagggtcataggtg-caatgctgctggccttgaagatgggagaagggg---cAGG--
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82454777 240 +  90941950 ATCCTGAGAACCTGTGATCTTATATACAAAATGAACTTTGCGGATGAgatt------aaggaccttgagatgggaAGAATATGCTAGGTTATATGCTAGG--TGGG-CCAATCTAATAACACACGTCCATAAAAGCAAATGACT-CCCCCCAGAGGGAGTTAAAGTTGTCAGCTTCAGGGAGACCTGATGATTTGGCAGCAGGGTCATAGGTG-CAATGctgctggccttgaagatggGAGAAGGGG---CAGG--
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24715225 240 +  33263144 atcctgagaatctgtgatcttatatacaaaatgaactttgcagatgagatt------aaggaccttgagatgggaagaatatgctaggttatatgctagg--tggg-ccaatctaatcacacaggtccataaaagcaaatgact-ccccctagagggagttaaagttgtcagcttcagggagacctgatgatttggcagcagggtcataggtg-caatgctgccggccttgaagatgggagaagggg---cAGG--
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964313 244 -   2117846 atcctgagaacctgtgaccttatatacaaaatgaactttgtggatgagatttaagtcaaggaccttgagataagaagaatatgctaggttat---ccagg--tggggccaatttaatcacataggtccataaaagcaaactact-ttgcccagaggagttaagagttgtcagcttcagggagactggatgatttgccagtgcggtcataggtg-caatgctacttgcttcgaagacggaagaagggg---cagg--
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82828184 201 + 104043685 ATTCCCAGTGTCAGTGATTTTTAATGC--------TTTTGTAGAGAAG--T------AAG--TCTCAAGGCGGGGACAGTGCACTA-ATCAT---CTGGGTATGGATCTATTTTCAACACATTGAT-----AAAACAAA--GAT-CCTCTCAGAGTGGGGCCGAGATGTAGGCTTCAGAGAGA--TGTAGAAATGGGAGCAGGCTCATGTG---------------------agatggaagaaagggcctcaag--
i mm10.chr15                C 0 I 11
s canFam3.chr10              46107038 243 -  69331447 aaccccagaacccgccccctcacttggtaaagggactgtgcagatatgact-aagtcaaggacct-gcgacggggagagtatgctggattat---ccagg--tggcccccatctagtcacatgagcccatgcaagcaaagaaac-ccttccagaggtagtgggagttgagggctctagggagatgtgatga--tgggagcagggtcagagatgccaacactgctggttttgaagatggaagaagggg---ccacga
i canFam3.chr10             I 30 C 0

a score=2552.000000
s hg38.chr22_GL383582v2_alt     93708 1 +    162811 g
s panTro4.chr22              40917780 1 +  49737984 g
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459472 1 +  46535552 g
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666888 1 - 115148730 g
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969747 1 +  95678458 G
i rheMac3.chr10             C 0 I 194
s macFas5.chr10              87626654 1 -  96509753 G
i macFas5.chr10             C 0 I 9
s papAnu2.chr10              82455017 1 +  90941950 G
i papAnu2.chr10             C 0 I 9
s calJac3.chrUn_GL286373      1964557 1 -   2117846 a
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46107281 1 -  69331447 g
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82828385 11 + 104043685 I
e chlSab2.chr19              24715465 0 +  33263144 C

a score=179289.000000
s hg38.chr22_GL383582v2_alt     93709 200 +    162811 ----------cggcag-ctgcagaa-tttttaaaaggcaaggaagcatgttctcccctaagactctggact-tttccaaagcccagcccacacctcaattcca--gcccagtaagacacctgtgttggactttgaacctacagaactgtaagcagaactgtat-----------------------------------------taacaagtttgtg---------------------gtaaggtgttatgacaatg-----atagaaaactaatacaCGGG
s panTro4.chr22              40917781 200 +  49737984 ----------cagcag-ctgtagaa-tttttaaaaggcaaggaagcatgttctcccctaagcctctggaaa-agatcaaagcccagcccacacctcaattcta--gcccagtaagacacctgtgttggactttgaacctacagaactgtaagcagaactttat-----------------------------------------taacaagtttgtg---------------------gtaatgtgttatgacaatg-----atagaaaactaatacaCGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459473 200 +  46535552 ----------cggcag-ctgtagaa-tttttaaaaggcaaggaagcatgttctcccctaagcctctggaaa-agatcacagcccagcccacacctcaattcta--gcccagtaagacacctgtgttggactttgaacctacagaactgtaagcagaactgtat-----------------------------------------taacaagtttgtg---------------------gtaatgtgttatgacaatg-----atagaaaactaatacaTGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106666889 195 - 115148730 ----------cggcag-ctatagaa-tttttaaaaggcaaggaagcacgttctcccctaagcctctggaaa-agatcacagcccagcccacaccttaattcca--gcccagtaagacacctgtgttggactttgaaactacagaactgtaagcagaactgtat-----------------------------------------taacaagtttgtg---------------------gtaatg-----tgacaatg-----atagaaaactaatacaCGGG
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1964558 202 -   2117846 ----------tggcag-ctgtagaattttttaaaaggcaaggaagcatgttcttccctaagactccagaaa-agatcacagcccagcccacatcttaattctagtgcccactaagacacttgtgttgaactttaaacctgcagaactgtaagcagaactgta------------------------------------------taacaagtttgtg---------------------gtaatgtgttatagcaatg-----atagaaaactaatacaCGGG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82828396 233 + 104043685 ----------aggtag-ttatag---ctcaaaaaaggtgagcaaaaa---tcgtctctacgcttccagaaagagggcagagcacagataacaaccaaattcca---ccaagtggggctc--acattggacttgtaaccta-aaaactgtaagagaaACCCTGTCTcaaaaaaacaaacaaacaaaaaaacaaaaaCCTGTAATGCAACAGGCATGTG-------------------------TATGTCATGGCAAGGAAATCATGGCAAGGCATTAC-TGAG
i mm10.chr15                I 11 I 1
s canFam3.chr10              46107282 215 -  69331447 ctaagaatgcgggcagcctttagaa-gttggatgagagaagaaaa----ttattcctggagcctccagaaa-gcaaatcagccctgctgacacctcagtctga--gcccagaag---acctgtgatagccccaagacctacagaactacaagg---------------------------------------------------taacaagtttgtgctttaaagccaccgagtttgtgtaatgtgttacagcagtg-----ataatagaccagtGGGGGGG
i canFam3.chr10             C 0 C 0
e chlSab2.chr19              24715465   0 +  33263144 C
e papAnu2.chr10              82455018   9 +  90941950 I
e macFas5.chr10              87626655   9 -  96509753 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=-1355.000000
s hg38.chr22_GL383582v2_alt     93909 3 +    162811 -GAT
s panTro4.chr22              40917981 3 +  49737984 -GAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459673 3 +  46535552 -GAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667084 3 - 115148730 -GAT
i nomLeu3.chr7b             C 0 C 0
s chlSab2.chr19              24715465 3 +  33263144 -GAT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964760 3 -   2117846 -GAT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82828630 2 + 104043685 --AG
i mm10.chr15                I 1 C 0
s canFam3.chr10              46107497 3 -  69331447 GGG-
i canFam3.chr10             C 0 I 35
e papAnu2.chr10              82455018 9 +  90941950 I
e macFas5.chr10              87626655 9 -  96509753 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=67161.000000
s hg38.chr22_GL383582v2_alt     93912 55 +    162811 TTCCCAA-GACTCTCAAGTGATTGTTCAttttccttttaggttc-tttt-----------tttttttt
s panTro4.chr22              40917984 54 +  49737984 TTCCCAA-GACTCTCAAGTGATTGTTCAttttccttttaggttc--ttt-----------tttttttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459676 53 +  46535552 TTCCCAA-GACTCTCAAGTGATTGTTCATTTTCCTCTTAGGtt---ttt-----------tttttttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667087 55 - 115148730 TTCCCAA-GACTCTCAAGTGATTGTTCATTTTCCTCTTAGGttc-tttt-----------tttttttt
i nomLeu3.chr7b             C 0 C 0
s chlSab2.chr19              24715468 56 +  33263144 TTCCCAA-GACTCTCAAGTGATTGTCCATTTTCCTCTTAGGttcttttt-----------tttttttt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964763 53 -   2117846 TTCCC---GACTCTCAAGTGATTTTTCATTTTCCTCTTAGGTTC-TTTT-----------TTTCTTTT
i calJac3.chrUn_GL286373    C 0 I 9
s mm10.chr15                 82828632 64 + 104043685 CTCACAGTGACACAGAAGTGACTGCTCATTTTTCTCTTACATTC--TTTAATGTAACAAATTTCTC--
i mm10.chr15                C 0 C 0
e canFam3.chr10              46107500 35 -  69331447 I
e papAnu2.chr10              82455018  9 +  90941950 I
e macFas5.chr10              87626655  9 -  96509753 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=6694.000000
s hg38.chr22_GL383582v2_alt     93967 8 +    162811 tttgatgg
s panTro4.chr22              40918038 8 +  49737984 tttgatgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459729 8 +  46535552 tttgatgg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667142 8 - 115148730 ttggatag
i nomLeu3.chr7b             C 0 C 0
s chlSab2.chr19              24715524 8 +  33263144 ttggatgg
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82828696 8 + 104043685 CCTCATGG
i mm10.chr15                C 0 I 271
e canFam3.chr10              46107500 35 -  69331447 I
e calJac3.chrUn_GL286373      1964816 9 -   2117846 I
e papAnu2.chr10              82455018 9 +  90941950 I
e macFas5.chr10              87626655 9 -  96509753 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=33752.000000
s hg38.chr22_GL383582v2_alt     93975 41 +    162811 agtttcgc-----tcttgtcgctctggagtgcaatggcatgatctc
s panTro4.chr22              40918046 41 +  49737984 agtttcgc-----tcttgtcgctctggagtgcaatggcatgatctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459737 41 +  46535552 agtttcgc-----tcttgtcgctctggagtacaatggcatgatctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667150 41 - 115148730 agtttctc-----tcttgtcgctctggagtgcaatggcatgatcta
i nomLeu3.chr7b             C 0 C 0
s chlSab2.chr19              24715532 46 +  33263144 agttttgctcttgtcttgtcgctctggggtgcaatggcatgatctc
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82828704 271 + 104043685 I
e canFam3.chr10              46107500 35 -  69331447 I
e calJac3.chrUn_GL286373      1964816  9 -   2117846 I
e papAnu2.chr10              82455018  9 +  90941950 I
e macFas5.chr10              87626655  9 -  96509753 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=170915.000000
s hg38.chr22_GL383582v2_alt     94016 99 +    162811 ggctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattacaggcacctgccaccacgcccagctaat
s panTro4.chr22              40918087 99 +  49737984 ggctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattataggcacccaccaccacgcccagctgat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459778 99 +  46535552 ggctcaccgcaacctccacctcccgggttcaagcgattcccctgcctcagcctcccgagtagatgggattacaggcacccgccaccatgcccggctaat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667191 99 - 115148730 ggctcaccgtaacctccacctcccgggttcaagcgattcccctgcctcagcctcccaagtagatgggattacaggcacccgccaccacgcccggctaat
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87626664 99 -  96509753 gactcaccacaacctctacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcagacaccaccacgcccagctact
i macFas5.chr10             I 9 C 0
s papAnu2.chr10              82455027 99 +  90941950 gactcaccacaacctctacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcacccaccaccacgcccagctact
i papAnu2.chr10             I 9 C 0
s chlSab2.chr19              24715578 99 +  33263144 ggctcaccacaacctctacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgttattgcaagcacccaccaccacgcccagctact
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82828704 271 + 104043685 I
e canFam3.chr10              46107500 35 -  69331447 I
e calJac3.chrUn_GL286373      1964816  9 -   2117846 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=180187.000000
s hg38.chr22_GL383582v2_alt     94115  91 +    162811 ctttgtatttttagtagagat-gaggtttcaccatgttggccaggctagtcttgaactc---------------ctgatctca-----ggtgatctg--cccacctcagcctct
s panTro4.chr22              40918186  91 +  49737984 ctttgtatttttagtagagat-gaggtttcaccatgttggccaggctagtcttgaactc---------------ctgatctca-----ggtgatctg--cccacctcagcctct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459877  91 +  46535552 ctttgtatttttagtagagat-ggggtttcaccatgttggccaggctagtcttgaactc---------------ctgacctca-----ggtgatctg--cccacctcagcctct
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667290  91 - 115148730 ctttgtattttaagtagagat-ggggtttcaccatgttggccaggctagtcttgaactc---------------ctgacctca-----cgtgatctg--cccacctcagcctct
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87626763  93 -  96509753 ctttgtatttttagtagagat-ggggtttcaacatgttggctaggctagtcttgaactc---------------ctgacctca-----ggtgatctgcccccacctcagcctcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82455126  91 +  90941950 ctttgtatttttagtagagat-agggtttcaacatgttggccaggctagtcttaaactc---------------ctgacctca-----ggtgatctg--cccacctcagcctcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24715677  91 +  33263144 ctttgtatttttagtagagat-ggggtttcaacatgttggccaggctagtcttgaactc---------------ctgacctca-----ggtgatctg--cccacctcagcctcc
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82828975 112 + 104043685 tttttttttttttttggagacaggggtttctctgtgtagctctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatcca--cctgtctctgcctcc
i mm10.chr15                I 271 C 0
e canFam3.chr10              46107500  35 -  69331447 I
e calJac3.chrUn_GL286373      1964816   9 -   2117846 I
e rheMac3.chr10              86969748 194 +  95678458 I

a score=115228.000000
s hg38.chr22_GL383582v2_alt     94206 40 +    162811 caaagtgctgggattacaggcatcagccaccgc-acctggc
s panTro4.chr22              40918277 40 +  49737984 caaagtgctgggattacaggcatcagccaccgc-acctggc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37459968 40 +  46535552 caaagtgctgggattacaggcatcggccaccgc-acctggc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667381 40 - 115148730 caaagtgctgggattacaggcatcagccactgc-gcctggc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969942 40 +  95678458 caaagtgctgggattacaggcgtcagccaccgc-gcctggc
i rheMac3.chr10             I 194 C 0
s macFas5.chr10              87626856 40 -  96509753 caaagtgctgggattacaggcgtcagccaccgc-gcctggc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82455217 40 +  90941950 caaagtgctgggattacaggcgtcagcgaCCGT-GCCTGGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24715768 40 +  33263144 caaagtgttgggattacaggcgtcagccaccgc-gcctggc
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82829087 40 + 104043685 -caagtgctgggattaaaggcgtgcgccaccactgtctggc
i mm10.chr15                C 0 C 0
e canFam3.chr10              46107500 35 -  69331447 I
e calJac3.chrUn_GL286373      1964816  9 -   2117846 I

a score=96734.000000
s hg38.chr22_GL383582v2_alt     94246 34 +    162811 cTTAGGTTCTTTAATGCAACAGATTTCTCCCTCA
s panTro4.chr22              40918317 34 +  49737984 cTTAGGTTCTTTAATGCAACAGATTTCTCCCTCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37460008 34 +  46535552 cTTAGGTTCTTTAATGCAACAGATTTCTCCCTCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667421 34 - 115148730 cTTAGGTTCTTTAATGCAACAGAGTTCTCCCTCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86969982 34 +  95678458 cTTAGGTTCTTTAATGCAACAGACTTCTCCCTCA
i rheMac3.chr10             C 0 I 322
s macFas5.chr10              87626896 34 -  96509753 cTTAGGTTCTTTAATGCAACAGACTTCTCCCTCA
i macFas5.chr10             C 0 I 356
s papAnu2.chr10              82455257 34 +  90941950 CTTAGGTTCTTTAATGCAACAGACTTCTCCCTCA
i papAnu2.chr10             C 0 I 324
s chlSab2.chr19              24715808 34 +  33263144 cTTAGGTTCTTTAATGCAACAGACTTCTCCCTCA
i chlSab2.chr19             C 0 I 347
s mm10.chr15                 82829127 20 + 104043685 -----------tAATTAAACTAatgctttta---
i mm10.chr15                C 0 C 0
s canFam3.chr10              46107535 33 -  69331447 TTTATATTCTTTAATGCAACAAATTTCTCCCTC-
i canFam3.chr10             I 35 C 0
e calJac3.chrUn_GL286373      1964816  9 -   2117846 I

a score=2309.000000
s hg38.chr22_GL383582v2_alt     94280 14 +    162811 ATTTGCCTAGTGAA-
s panTro4.chr22              40918351 14 +  49737984 ATTTGCCTAGTGAA-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37460042 14 +  46535552 ATTTGCCTAGTGAA-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667455 13 - 115148730 ATTTGCCTAGTGA--
i nomLeu3.chr7b             C 0 C 0
s mm10.chr15                 82829147  9 + 104043685 at---cccagta---
i mm10.chr15                C 0 C 0
s canFam3.chr10              46107568  8 -  69331447 -------CTGTAAAT
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1964816  9 -   2117846 I
e chlSab2.chr19              24715842 347 +  33263144 I
e papAnu2.chr10              82455291 324 +  90941950 I
e macFas5.chr10              87626930 356 -  96509753 I
e rheMac3.chr10              86970016 322 +  95678458 I

a score=1299159.000000
s hg38.chr22_GL383582v2_alt     94294 478 +    162811 ACCTACAATTTCAC-----------TAGGCAAATTGTGACATCAGGAGATCAATAA----------AGAAGGAACTCTGGGTCTGTCTTCGACATCTGTTTTTCTTGTAgaagaaacaagaggctaaagcaaagtgacctgctaaagatcacatagctagtaagagaacttagaacttta-cctctttttcttctgaaccccaagttcaactttcttcataccataccatgacgcctGTTAGCCCCCttcattcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCTATA--GTATCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCCAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGGAGTAGCTATTTGCATTATCATCCTCCTATGCTACAA--ATAATATATTAAAGTCACTGCACAGCT----AAATGTCCTTT
s panTro4.chr22              40918365 477 +  49737984 ACCTACAATTTCGC-----------TAGGCAAATTGTGACATCAGGAGATCAATAA----------AGAAGGAACTCTGGGTCTGTCTTCGACATCTGTTTTTCTTGTAgaagaaac-agaggctaaagcaaagtgacctgctaaagatcacatagctagtaagagaacttagaacttta-cccctttttcttctgaaccccaagttcaactttcttcataccataccatgacgcctGTTAGCCCCCttcaatcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCTATA--GTATCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACAA--ATAATATATTAAAGTCACTGCACAGCT----AAATGTCCTTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37460056 473 +  46535552 ACCTACAATTTCAC-----------TAGGCAAATTGTGAAATCAGGAGATCAGTAA----------AGAAGGAACTCTGG----GTCTTTGACATCTGTTTTTCTTGTAgaaaaaac-agaggctaaagcaaagtgacctgctaaagatcacataggtagtaagagaacttagaacttca-cccctttttcttctgaaccccaagttcaactttattcataccataccatgacgcctGTTAGCCCCCttcattcactcaactatccagcatttgaaaagtactttctaggtgccagctgccaaagatagaatataaataCTTATCTATA--GTATCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACAA--ATAATATATTAAAGTCACTGCACAGCT----AAATATCCTTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667468 471 - 115148730 ------AATTTCAC-----------TAGGCAAATTTTGACATCAGGAGATCAATAA----------AGAAGGAACTCTGGGTCTGTCTTCGACATCTGTTTTTCTTGTAgaagaaac-agaggctaaagccaaatgacctgctaaggatcacatagctagtaagagaacttagaacttta-cccctttttcttctgaaccccaggttcaactttcttcataccacaccaTGACACCTGTTAGCCCCCttcattcactcaactatccaacatttgaaaagtactttctaggtgccaggtgccaaagatagaatataaataCTTATCTATA--GTATCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAATAGCTATTTGCGTCATCATCCTCCTATGCTACAA--ATAATATACTAAAGTCACTGCACAGCT----AAATGTCCTTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86970338 478 +  95678458 ACCTACAACTTCAG-----------TAGGCAAATTCTGACATCAGGAGATCAATAA----------Agaaggaactctgggtctatcttcaacatctgtttttcttgttgaagaaac-agaggccaaaacaaagtgacctgctaaagatcacatagtaagtaagagaacttagaacttcaccccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGTTAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCTATA--GTGTCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACAA--ATAATATATTAAAGTCACTGCATAGCT----AAATATCCTTT
i rheMac3.chr10             I 322 I 2202
s macFas5.chr10              87627286 477 -  96509753 ACCTACAACTTCAG-----------TAGGCAAATTCTGACATCAGGAGATCAATAA----------AGAAGGAACTCTGGGTCTATCTTCAACATCTGTTTTTCTTGTtgaagaaac-agaggccaaaacaaagtgacctgctaaagatcacatagtaagtaagagaacttagaacttca-cccctttttcttctgaaccccaagttcaactttcttcataccataccgtgatgcctGTTAGCCCCCttcattcactcaaccatccaacatttgaaaagtactctctaggtgccaggtgccaaaggtagaatataaataCTTATCTATA--GTGTCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACAA--ATAATATATTAAAGTCACTGCATAGCT----AAATATCCTTT
i macFas5.chr10             I 356 C 0
s papAnu2.chr10              82455615 476 +  90941950 acctacAACTTCAG-----------TAGGCAAATTCTGATATCAGGAGATCAATAG----------AGAAGGAACTCTGGGTCTATCTTCaacatctgtttttcttgttGAAGAAAC-AGAGGCCAAAACAAAGTGACCTGCTAAAGATCACATAGTAAGTAAGAGAACTTAGAACTTCA-CCCCTTTTTCTTCTGAACCCCAAGTTCAACTTTCTTCATACCATACCGTGATGCCTGTTAG-CCCCTTCATTCACTCAACCATCCAACATTTGAAAAGTACTCTCTAGGTGCCAGGTGCCAAAAGTAGAATATAAATACTTATCTATA--GTGTCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAActtctaattaaatttttattctatacTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGctacaa--ataatatattaaagtCACTGCATAGCT----AAATATCCTTT
i papAnu2.chr10             I 324 C 0
s chlSab2.chr19              24716189 477 +  33263144 ACCTACAATTTCAG-----------TAGGCAAATTCTGACATCAGGAGATCAATAA----------Agaaggaactctgggtctatcctcaacatctgtttttcttgttgaagaaac-agaggccaaaacaaagtgacctgctaaagatcacatagtaagtaagagaacttagaacttca-cccctttttcttctgaaccccaagttcaactttcttcataccataccatgatgcctGTTAGCCCCCttcattcactcaactatctaacatttgaaaagtattctctaggtgccaggtgccaaaggtagaatataaataCTTATCTATA--GTGTCTTCCATGTGTAAGGTTTTCCCTTCTA-CCCAAAAATCAATACCCAGGCTAGTACAATTTCTAATTAAATTTTTATTCTATACTTTTTACCTGAAGTAGCTATTTGCATTATCATCCTCCTATGCTACAA--ATAATATATTAAAGTCACTGCATAGCT----AAATATTCTTT
i chlSab2.chr19             I 347 C 0
s mm10.chr15                 82829156 317 + 104043685 ---------ctcac-----------gaggcagctt--------------------------------ggtggagctctgtgttccaggccagc--ctggtctactt--------aac--------aaaacaaaacaatc------------------aaacaagagaa-----------a-----------ttctAAA---------------------------------------------------caatcaatcaatcaatcaat---------GTGCCTCCCATGTGCCAATTGACAAAGACAAAATATAAAAACCAATTTCTAT-AAATTCTCCATGTG--------TCTGCTCTA-CACCCTAACCTGTACTTTAGCCAGTATAACTTCCAATTAGATTTTTACT-----CGTTTTCCCTGAAGAAAAACTTTCCCTTCAC-TTTTCCCACACTGTAATTATATCACACT-AAGCCCCACCATAGC-----AAGTGTCCTTG
i mm10.chr15                C 0 I 3
s canFam3.chr10              46107576 469 -  69331447 ATCCACAATTTCACTCACTTTTTATTGGGCAAATCCTGGCATC-----ATCAGTGACACTGGAACTAGAAGGGATGCTGGGTCTGTCCTCAGTGACCTTGTTTCTGGTTCCAGAAAC-AGAAA--GAAGCAACATGGCCTGCTAGAGATCACATAACTAGAAGTA----CCAGCACTCTG-------------ATGAACCCCAAGCTTGACATTCT--GTCTCATACCACATGGCCTGCTAATCCTCTTCGTTCACTCAACTATCCAACATTCGAAAAGTATTTCCTATATGCCAGATGCC--AGACAGAATATAATACCTTATCTCTACAGTGTCTTCTGTTTCTA--TTCTCCCCTTCTGTCCCCCAAATCAATATGTAGGCTAATACCATTTCCAATTGGATTTTTGTT-------TTTTACCTGAAGAAACTAGTTACACTACCATTCTCATCTAATGCAA--ATAATATAATAAAGTCACCGCATAGCTAAAAAAAAGTCCTTT
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1964816   9 -   2117846 I

a score=9918.000000
s hg38.chr22_GL383582v2_alt     94772 4 +    162811 GTTT
s panTro4.chr22              40918842 4 +  49737984 GTTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37460529 4 +  46535552 GTTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667939 4 - 115148730 GTTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86973018 4 +  95678458 GTTT
i rheMac3.chr10             I 2202 C 0
s macFas5.chr10              87627763 4 -  96509753 GTTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82456091 4 +  90941950 GTTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24716666 4 +  33263144 GTTT
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82829476 1 + 104043685 G---
i mm10.chr15                I 3 I 283
s canFam3.chr10              46108045 4 -  69331447 GTTT
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1964816 9 -   2117846 I

a score=304784.000000
s hg38.chr22_GL383582v2_alt     94776 115 +    162811 TTGACCACAGTGTTACTAC------------ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAATGAGACACATTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA
s panTro4.chr22              40918846 115 +  49737984 TTGACCACAGTGTTACTAC------------ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAATGAGACACACTG-GGGGCTCCAGGCATGATTTCTAAATTAAGACACA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37460533 115 +  46535552 TTGACCACAATGTTACTAC------------ATTCACTCCAAACAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAACGAGACATGTTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106667943 115 - 115148730 TTGACCACAATATTACTAC------------ATTCACTCCAAGCAGAGG-TAAGTCCATACAATACTGCTCCCCAGGAAGAATGAGACACATTG-GAGGCTCCAAGCATGATTTCTAAATTAAGACACA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86973022 110 +  95678458 TTGACCACAATGTTACTAC------------ATTCACTCCAAACAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAATGAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87627767 110 -  96509753 TTGACCACAATGTTACTAC------------ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAATGAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82456095 110 +  90941950 TTGACCACAATGTTACTAC------------ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCCCCCCAGGCAGAATGAGACACACTG-GGGGCTCCAAGCATGATTTCTAAAttaagacaca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24716670 110 +  33263144 TTGACCACAATGTTACTAC------------ATTCACTCCAAGCAGAGG-TAAGTCC-----ATACTGCTCCCCAGGCAGAATGAGACACACTG-GGGGCTCCAAGCATGATTTCTAAATTAAGACACA
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46108049 128 -  69331447 TTGACTACACTGCTGTTACAAGTTTGGCGATATTCATTCCTAGGGGAGGTTAAGTCCACATAATACTGCTCCCCACACA-AACAAGACACATGGTGGGGCTTCAATCATGGTTTCTCAATCAAGGTAGG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82829477 283 + 104043685 I
e calJac3.chrUn_GL286373      1964816   9 -   2117846 I

a score=4910624.000000
s hg38.chr22_GL383582v2_alt     94891 1809 +    162811  
s panTro4.chr22              40918961 1806 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37460648 1805 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106668058 1823 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86973132 1755 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87627877 1755 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82456205 1768 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24716780 1784 +  33263144  
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82829760 1778 + 104043685  
i mm10.chr15                I 283 I 7
s canFam3.chr10              46108177 1765 -  69331447  
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1964816    9 -   2117846 I

a score=440231.000000
s hg38.chr22_GL383582v2_alt     96700 192 +    162811 --CAGTTTAAAGTTAATTTTTTGTTAAGTAATTTCTCTCCTACAA-TCTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGCTGGTCGTT-TTTTTGGTAAGTCTAGCTGCTGTATGTTTCAGTAATGTTTCATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
s panTro4.chr22              40920767 192 +  49737984 --CAGTTAAAAGTTAATTTTTTGTTAAGTAATTTCTCTCCTACAA-TCTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGCTGGTCGTT-TTTTTGGTAAGTCTAGCTGCTGTATGTTTCAGTAATGTTTCATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37462453 177 +  46535552 --CAGTTAAAAGTTAATTTTTTGTTAAGTAATTTTTCTCCTACAA-TCTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACC----------------TTTTGGTAAGTCTAGCTGCTGTACGTTTCAGTAACGTTTCATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGTCTCCGGACACTTCACTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106669881 193 - 115148730 --CAGTTAAAAGTTAATTTTTTGTTAAGTAATTTTTCTCCTACAA-TCTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGCTGGTCGTTGTTTTTGATAAGTCTAGCTGCTGTATGTTTCAGTAATGTTTCATCTCCGACGGTGTGGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86974887 183 +  95678458 -----TTAA-----AATTTTTTGTTAAGTAATTTTTCTCCTACAA-CCTGCCTTAAACAAGCAGACCCTGCATGGGTTTGGACACCTGCTGCTAGTCG-T-TTTTTGGTAAGTCTAGCTGTTGTATGTTTCAGTAACGTTTCATCTCTGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87629632 184 -  96509753 -----TTAA-----AATTTTTTGTTAAGTAATTTTTCTCCTACAA-CCTGCCTTAAACAAGCAGACCCTGCATGGGTTTGGACACCTGCTGCTAGTCGTT-TTTTTGGTAAGTCTAGCTGTTGTATGTTTCAGTAACGTTTCATCTCTGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82457973 187 +  90941950 --cagttaa-----aattttttgttaagtAATTTTTCTCCTACAA-CCTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGCTAGTCGtt-tttttGGTAAGTCTAGCTGTTGTATGTTTCAGTAACATTTCATCTCTGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24718564 187 +  33263144 --CAGTTAA-----AATTTTTTGTTAAGTAATTTTTCTCCTACAA-CCTGCCTTAAACAAGCAGACCCTGCATGGGTCTGGACACCTGCTGCTAGTCGTT-TTTTTGGTAAGTCTAGCTGTTGTATGTTTCAGTAACGTTTCATCTCCGAGGGTGCAGAAGGTCAGTTCTTGGCCAAGTCTCTGGACACTTCACTT
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46109942 134 -  69331447 CTCAATTAAAC---AATTATTTTTTAAA-ACTTTTCCCCTTAGAATTCTGCCTAAAACAAGCAGACCCCATGTGGG-CTGAA----------------TT-CTATCACACAGTC-------------TTTCTGTAAC-------TTCAGAGAGGGTGTACGGTCAGCTTTTGGCTA--------------------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82831538   7 + 104043685 I
e calJac3.chrUn_GL286373      1964816   9 -   2117846 I

a score=126201.000000
s hg38.chr22_GL383582v2_alt     96892 48 +    162811 CTTAGCTACTATTTACTATTACTTTCATTGTATCTCCCCTCTCAATTC
s panTro4.chr22              40920959 48 +  49737984 CTTAGCTACTATTTACTATTACTTTCATTGTATCTCCCCTCTCAATTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37462630 48 +  46535552 CTTGGCTACTATTTACTATTACTTTCATTACATCTCCCCTCTCAATTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106670074 48 - 115148730 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86975070 48 +  95678458 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87629816 48 -  96509753 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82458160 48 +  90941950 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24718751 48 +  33263144 CTTAGCTACTATTTACTATTACTTTCATTATATCTCCCCTCTCAATTC
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82831545 42 + 104043685 CCTGGCTACTAT------TTACTTTCACTGGACTTCCACTCTCAGGTC
i mm10.chr15                I 7 C 0
s canFam3.chr10              46110076  5 -  69331447 ----------------------------TATAT---------------
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      1964816  9 -   2117846 I

a score=667395.000000
s hg38.chr22_GL383582v2_alt     96940 204 +    162811 TCCTATCTGGGACCAATACAAACTAA-AACTATTTTTA--AAGCTTTCTAAAGCA-TTTTGCATTACAAGAAAAGATGTTAAATAAATGGGGACTAAT------AATGACACACAACTGCATACAAATTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA
s panTro4.chr22              40921007 204 +  49737984 TCCTATCTGGGACCAATACAAACTAA-AACTACTTTTA--AAGCTTTCTAAAGCA-TTTTGCATTACAAGAAAAGATGTTAAATAAATGGGGACTAAT------AATGACACACAACTGCATACAAATTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37462678 205 +  46535552 TCCTATCCAGGACCAATACAAATTAAGAACTATTTTTA--AAGCTTTCTAAAGCA-TTTTGCATTGGAAGAAAAGATGTTAAATAAATGGGGACTAAT------AACGACACACAACTGCATACAAATTAAA-TTCTAGCAGGATTTCGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106670122 205 - 115148730 TCCTATCCGGGACCAATACAAATTAACAACTATTTTTA--AAGCTTTCTAAAGCA-TTTTGCATTGGAAGAAAAGATGTTAAATAAATGGGGACTAAT------AATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCAAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACCGCCTCACA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86975118 204 +  95678458 TCCTATCCTGGACCAATACAAATTAATAACTATTTTTA--AAGCCTTCTAAAGCA-TTTTGCATTGGAAGAATAGATGTTAAATAAATGAGGACTAAT-------ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACCAGAATGAGAAAAACTGCCTCACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87629864 204 -  96509753 TCCTATCCTGGACCAATACAAATTAAAAACTATTTTTA--AAGCCTTCTAAAGCA-TTTTGCATTGGAAGAATAGATGTTAAATAAATGAGGACTAAT-------ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACCAGAATGAGAAAAACTGCCTCACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82458208 204 +  90941950 TCCTATCCTGGACCAATACAAattaataactattttta--aagccTTCTAAAGCA-TTTTGCATTGGAAGAATAGATGTTAAATAAATGGGGACTAAT-------ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTCGAAACCATTGAAAACTGCCCC-AAAATGGTATATTGAGCACAACTAGAATGAGAAAAACTGCCTCACA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24718799 204 +  33263144 TCCTATCCTGGACCAATACAAATTAATAACTATTTTTA--AAGCCTTCTAAAGCA-TTTTGTATTGGAAGAACAGATGTTAAATAAATGGGGACTAAT-------ATGACACACAACTGCATACAAATTAAA-CTCTAGCAGGATTTTGAAAGCATTGAAAACTGCCCC-AAAATGGCATATTGAGCACAACTAGAATGAGAAAAACTGCCTCACA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1964825 207 -   2117846 TTCTATCCTTGACCAATACAAATTAACTACTGTTTTTATGAAGTTTTCTAAAGCA-TTTTGCACTGGAAGAAAACAT------TAAATGGGGACTAACTGCAGTTATGATACATAACTGCATACAAATTAAA-CACTAGCAGGAGTTAGAAAGCATTGAAAACTACCCC-AAAATGGCATACTGGGCACAACCAGAATGAGAAAAACAGCCTCACT
i calJac3.chrUn_GL286373    I 9 C 0
s mm10.chr15                 82831587 165 + 104043685 TTCCATGGTTGAGCAATAC---------TCTTTTTTTA--A--------AAAGTC-TCTTGTTT-------GAAGATGTT---TAAATGGGGACTGAA----------ATACACATGAACACATAAATGAAAGAATTAGCAAGAGTTCAAAACCACTGACAA---TCTG-AGAAGGGCTTACTAAGCC-------AATCTGAGCAACTACATCACA
i mm10.chr15                C 0 I 625
s canFam3.chr10              46110081 182 -  69331447 ---------------------AACAGCAATTATTTTTA--GTGTTTTGTGAAGCACTTTTGCACTGGGAG------TACTAAATAGATGAGGAGAGAA----AAAATAACACACAATCACATACTAATTAAA-TATTTGCAGGAGATCAAAAGCACTGAAAACTACCCCTAAAAAGGCACAAGGAGGACAACCAGAATGAGGACAAGTGCCCTACA
i canFam3.chr10             C 0 C 0

a score=370981.000000
s hg38.chr22_GL383582v2_alt     97144 113 +    162811 GGCTTGCCTGTTGTACTCTACAGACAGTGCCC----TCTGTTATGTGGAGAGCAGACCTGGAAACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACCTGCCAGGTGCTCCTAGCC
s panTro4.chr22              40921211 113 +  49737984 GGCTTGCCTGTTGTACTCTACAGACAGTGCCC----TCTGTTATGTGGAGAGCAGACCTGGAAACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACCTGCCAGGTGCTCCTAGCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37462883 102 +  46535552 GGCTTGCTTGTTGTACTCT-----------CC----TCTGTTATGTGGAGAGCAGACCTGGGCACCAATGACGCCTTTGCTGCGTGCATCAGAGTCACCTGTCAGGTGCTCCTAGCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106670327 113 - 115148730 GGCTTGCCTGTTGTACTCTACAGACACTGCCC----TCTGTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACCTGCCAGGTGCTCCCAGCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86975322 113 +  95678458 AGCTTGCCTGTTGTACTCTACAGACACTGCCC----TCTGTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTTCATCAGAGTCACCTGCCAGGTGCTCCTAGCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87630068 113 -  96509753 AGCTTGCCTGTTGTACTCTACAGACACTGCCC----TCTGTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTTCATCAGAGTCACCTGCCAGGTGCTCCTAGCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82458412 113 +  90941950 AGCTTGCCTGTTGTACTCTACAGACACTGCCC----TCTGTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACCTGCCAGGTGCTCCTAGCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24719003 113 +  33263144 AGCTTGCCTGTTGTACTCTACAGACACTGCCC----TCTGTTATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCCTGCATCAGAGTCACCTGCCAGGTGCTCCTAGCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1965032 112 -   2117846 GGCTTGCCTGTTGTACTCTCCAGACACTGCCC----CCCATCATGTGGAGAGCAGACCTGGGCACCAATGACTCCTTTGCTGCTTGCACCAGCATCGCCTGCCA-GTGCTCCTAGCC
i calJac3.chrUn_GL286373    C 0 I 123
s canFam3.chr10              46110263  99 -  69331447 GGCCAGTCGGCTGGA-TCTGCAGCTACTTCCCCCTGCCTGTTATACAGACAGCAGGCTCAG-----------------GCTGCCTGCACCAGTGTCACCTGCCACGTGCTCCTGGCC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82831752 625 + 104043685 I

a score=928433.000000
s hg38.chr22_GL383582v2_alt     97257 294 +    162811 ATACTTCTCCAAACCTGTCCC-----------------TACTCACAT-----TAA-----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCTCCAATACAAGCCCATGAAA---ACACTCACACAA-ACTTTCTTTAATCTG-ATCATCTTTCAAGCATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCTCCCATAAAAGCCCC
s panTro4.chr22              40921324 294 +  49737984 ATACTTCTCCAAACCTGTCCC-----------------TACTCACAT-----TAA-----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACGACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCCCACGAAA---ACACTCACACAA-ACTTTCTTTAATCTG-ATCATCTTTCAAGCATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCTCCCATAAAAGCCCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37462985 299 +  46535552 ATACTTCTCCAAACCTGTCCC-----------------CACTCACATTAGAGTAA-----------TCTAGAATAACCTGCCGTGGCTGATTCTGGACCCTCTGCTGTCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAACACAAGCCGATGAAA---ACACTCACACAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGCATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCTCCCATAAAAGCCCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106670440 295 - 115148730 ATACTTCTCCAAACCTGTCCC-----------------CACTCACAT-----TAA-----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTATTCCTTACAACACACTTAGGGCCCAATAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCCGACGAAA---ACACACACACAATTCTTTCTTTAATCTG-ATCATCTTTCAGGCATAATTTGAAATCAAATAATATATTTACATCACCATTCTCCTCCCATAAAAGCCCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86975435 295 +  95678458 ATACTTCTCACAACCTATCCC-----------------CATTCACATTAGAGTAAC----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCACCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACT----CAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGCATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87630181 295 -  96509753 ATACTTCTCACAACCTATCCC-----------------CATTCACATTAGAGTAAC----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCACCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGATGAAA---ACACT----CAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGCATAATTTGAAATAAAATTATACATTTAGATCACCATTCTCCACCCATAAAAGCCCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82458525 299 +  90941950 ATACTTCTCACAACCTATCCC-----------------CATTCACATTAGAGTAAC----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTAGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCatcttctctgcctcctgggaccCAGTCATCTGCTTCCCACCGATACAAGCAGATAAAA---ACACTCAAACAA-ACTTTCTTTAATCTG-ATCATCTTTCAGgcataatttgaaataaaattatacatttagaTCACCATTCTCCACCCATAAAAGCCCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24719116 299 +  33263144 ATACTTCTCACAACCTATCCC-----------------CACTCACATTAGAGTAAC----------TCTAGAATAATCTGCTGTGGCTGATTCTGGACCCTCTGCTGCCATGTGGATCTTAGGTCCAACAGATGGTACTACTCCTT-CAACACACTTAGAGGCTAAGAGTTCATCTTCTCTGCCTCCTGGGACCCAGTCATCTGCTTCCCACCAATACAAGCAGGTGAAA---ACACTCAAACAA-ACTTTCTTTAATCTG-ATCATCTTTCAGGCATAATTTGAAATAAAATTATATATTTAGATCACCATTCTCCACCCATAAAAGCCCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1965267 304 -   2117846 ATACTTCTTCCAGCCTGTTCC-----------------CACTCACATTAGAGTAATGTGAGTAGGAACTAGAATAATCTGCCGTGGCTAATTCTGGACCCTCTGCTGCCACGTGGATCCTAGGTCCAACAGATGGTACTGCTCCTTACAACACACTTGGAGCCTAGGAGTTCATCTTCTCTGCATCCTGAGACCCAGTCATCTGCTTCCCACCAATACAAGCCCATGAAA---ACACTCACATAA-GCCTTCTTTAATCTGAATTATCTTTCAGGCACAATTTGAAATAAAATTATATACTTAAA-------TCTCCTGCCATAAAAGCCCC
i calJac3.chrUn_GL286373    I 123 C 0
s canFam3.chr10              46110362 277 -  69331447 AAAGTTCTCCCAAACTATCCCCACCCTGCAACCCCACTCACTCACATTAGAATGA-----------TCTAGAATAATTT-CTCCCGCTGCTTCTGGATCCCCTGCTGCCACAAGGGGCTGAGATCCAGCAGGTGGTACTGCTCCTCCCAACACTCCTAGAGCCTAACAGC---------------------------TCAGCTGCTTCCCACCAAAACCAGGAGAAAAAAAACACATAGGCACAA-TCTTCATCTGATC---ATTATCTTTCAGATATA---TG---------TATCCATTTAGACTCCCACTTCCCTCCCATAAAATCCCC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82831752 625 + 104043685 I

a score=1775004.000000
s hg38.chr22_GL383582v2_alt     97551 507 +    162811  
s panTro4.chr22              40921618 507 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37463284 503 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106670735 507 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86975730 499 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87630476 499 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82458824 499 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24719415 499 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1965571 500 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82832377 463 + 104043685  
i mm10.chr15                I 625 I 662
s canFam3.chr10              46110639 469 -  69331447  
i canFam3.chr10             C 0 C 0

a score=375755.000000
s hg38.chr22_GL383582v2_alt     98058 114 +    162811 TAACACTGAGCAAACAAATAATGAGAAGTTAGTAGGTCTAAGACGCAGCTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTTATGCCATTGTTGCTTT--
s panTro4.chr22              40922125 114 +  49737984 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGACGCAGCTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTTATGCCATTGTTGCTTT--
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37463787 115 +  46535552 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGATGCAGCTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACATA-ACCTCTCTTTATGCCATTGTTGCTTT--
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671242 110 - 115148730 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAG----AGCTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACAT--ACCTCTTTTTATGCCATTGTTGCTTT--
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86976229 116 +  95678458 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCCAAGATGCAGGTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACATATACCTCTTTTTATGCCATTGTTGCTTT--
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87630975 116 -  96509753 TTACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCCAAGATGCAGGTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTTATGCCATTGTTGCTTT--
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82459323 116 +  90941950 TTACACTGAgcaaacaaataatgaaaagttAGTAGGTCTAAGATGCAGGTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTTATGCcattgttgcttt--
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24719914 116 +  33263144 TAACACTGAGCAAACAAATAATGAAAAGTTAGTAGGTCTAAGATGCAGGTGGGGAAGGAGGTCTTTTCTCCAGAAGATTCTGTCACATACACCTCTTTTTATGCCATTGTTGCTTT--
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1966071 114 -   2117846 CATCAGTGAGCAAACAAATAATGAAAAGTTCGTAGGTCTAAGATGTACCTGGGGAAGGTGGTCTTTTCTCCAGAAGACTC--TCACATACACCTCTTTCTATGCCATTGTTGCTTT--
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46111108 106 -  69331447 TATGATTCAGCAAACAAATACTGTAAAAT---CAGGTCTCAGATACAACTGGGCAAGGGTGTCTTTTCTCTAGAAGACTCTATCACATGTACTTTT---------GTTGTTGTTCTTT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I

a score=13618.000000
s hg38.chr22_GL383582v2_alt     98172 18 +    162811 AAAAAATCCAGATTCTCA
s panTro4.chr22              40922239 18 +  49737984 AAAAAATCCAGATTCTCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37463902 18 +  46535552 AAAAAATCCAGATTCTCG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671352 18 - 115148730 AAAAAATCCAGATTCTCA
i nomLeu3.chr7b             C 0 C 0
s canFam3.chr10              46111214 18 -  69331447 TGTAAATCCAGATTTTCA
i canFam3.chr10             C 0 I 83
e mm10.chr15                 82832840 662 + 104043685 I
e calJac3.chrUn_GL286373      1966185  0 -   2117846 C
e chlSab2.chr19              24720030  0 +  33263144 C
e papAnu2.chr10              82459439  0 +  90941950 C
e macFas5.chr10              87631091  0 -  96509753 C
e rheMac3.chr10              86976345  0 +  95678458 C

a score=148074.000000
s hg38.chr22_GL383582v2_alt     98190 310 +    162811 ggccgggcatggtggctcacgcctgtaattccagcactttgtgaggccgaggcgggcggatcacctgaggtcacgagtttgagaccaggctggccaacacagtgaaaccctgtctctacta----------------aaaatacaaaaattagctgggtgtggtggtgcatggctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaacctgggaggtggaggttgcagtgagcgagatcatgccattgtactccagcctgggcaacaagagtgaaactccgtctc----aaaaaaaaaaaaaaaaaaaaaaaaaaaa
s panTro4.chr22              40922257 288 +  49737984 ggccgggcgtggtggctcatgcctgtaattccagcactttgtgaggctgaggcgggcggatcacctgaggtcacgagtttgagaccaggctggccaacacagtgaaaccctgtctctacta----------------aaaatacaaaaattagctgggcgtggtggtgcacggctgtaatcccagctactcgggaggctgaggcaggagaatcgtttgaacctgggaggtggaggttgcagtgagcgagatcatgccattgtactccagcctggacaacaagagtgaaactccgtctc--------------------------aaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37463920 312 +  46535552 ggtcgggcgtgatggctcatgcctgtaatcccagcactttatgaggccgaggtgggtggatcacctgaggtcgtgagtttgagaccaggctggccaacacggtgaaaccctgtctctacta----------------aaaatacaaaaattagctgggcgtagtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatagcttgaacctgggaagcggaggttgcagtga--gagatcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671370 325 - 115148730 ggctaggcgtggtggctcacgcctgtaatcccagcactttgtgaggctgaggcggaaggatcacctgaggtcgcaagtttgagaccaggctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagaaaatacaaaaattagctgggcgtggtggtgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcgga-gttgcagtgagcgagatcatgccattgcactccagcctgggcaacaagagtgaaactccgtttc----aaaaaaaaaaaaaaaaaaaaaaaaaaaa
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I
e canFam3.chr10              46111232  83 -  69331447 I
e calJac3.chrUn_GL286373      1966185   0 -   2117846 C
e chlSab2.chr19              24720030   0 +  33263144 C
e papAnu2.chr10              82459439   0 +  90941950 C
e macFas5.chr10              87631091   0 -  96509753 C
e rheMac3.chr10              86976345   0 +  95678458 C

a score=910.000000
s hg38.chr22_GL383582v2_alt     98500 1 +    162811 a
s panTro4.chr22              40922545 1 +  49737984 a
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464232 1 +  46535552 a
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671695 1 - 115148730 a
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      1966185 1 -   2117846 A
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I
e canFam3.chr10              46111232 83 -  69331447 I
e chlSab2.chr19              24720030 0 +  33263144 C
e papAnu2.chr10              82459439 0 +  90941950 C
e macFas5.chr10              87631091 0 -  96509753 C
e rheMac3.chr10              86976345 0 +  95678458 C

a score=102489.000000
s hg38.chr22_GL383582v2_alt     98501 33 +    162811 aaaaaaTCCAGATTCTCACCCGTGAGCTGTGTT
s panTro4.chr22              40922546 33 +  49737984 aaaaaaTCCAGATTCTCACCCGTGAGCTGTGTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464233 33 +  46535552 gaaaaaTCCAGAGTCTCACCCGTGAGCTGTGTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671696 33 - 115148730 aaaaaaTCCAGATTCTCACCAGTGAGCTGTGTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86976345 33 +  95678458 AAAAAATCCAGATTCTCACCTGTGAGCTGTGTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87631091 33 -  96509753 AAAAAATCCAGATTCTCACCTGTGAGCTGTGTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82459439 33 +  90941950 aaaaaatccAGATTCTCACCTGTGAGCTGTGTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24720030 33 +  33263144 AAAAAATCCAGATTCTCACCCGTGAGCTGTGTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1966186 33 -   2117846 AAAAAATCCAGATTCTCACCCATGAGCTATTTT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I
e canFam3.chr10              46111232 83 -  69331447 I

a score=477781.000000
s hg38.chr22_GL383582v2_alt     98534 152 +    162811 ATGAGGAAGGGACCTCTGCAATAATGTGAAGGTAACCCTTGGCTAACGAAA--GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTG-TAAGTTATTCTACTGAATGTCAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
s panTro4.chr22              40922579 153 +  49737984 ATGAGGAAGGGACCTCTGCAATAATGTGAAGGTAACCCTTGGCTAACGAAA--GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTGTTAAGTTATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464266 152 +  46535552 ATGAGGAAGGGACCTCTGCAGTAATGTGAAGGTAACCCTTGGCTAACGAAG--GTAAAAACACTAGACCCATGCTTCTT--CAGAATCATAAAGTA-TAAGTTACTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671729 152 - 115148730 ATGAGGAAGGGACCTCTGCAGTAATGTGAAAGTAACTCTTGGCTAACGAAG--GTAAAAACACCAGACCCATGCTTCTT--CAGAATCATAAAGTA-TAAGTTATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86976378 154 +  95678458 ATGAGGAAGGGACCTCTGCAGTAACGTGAAGGTAACCCTTGGCTAATGAAGTTGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTG-TAAATTATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87631124 154 -  96509753 ATGAGGAAGGGACCTCTGCAGTAACGTGAAGGTAACCCTTGGCTAATGAAGTTGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTG-TAAATTATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82459472 154 +  90941950 ATGAGGAAGGGACCTCTGCAGTAACGTGAAGGTAACCCTTGGCTAACGAAGTTGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTG-TAAATTATTCTATTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24720063 154 +  33263144 ATGAGGAAGGGACCTCTGCAGTAACGTGAAGGTAACCCTTGGCTAACGAAGTTGTAAAAACACCAGACTGGTGCTTCTT--CAAAATCATAAAGTG-TAAATTATTCTACTGAATGTGAAGAAGGCAGTTTGACTTCCTAACGAGCTGTTCTCTGGA
i chlSab2.chr19             C 0 I 300
s calJac3.chrUn_GL286373      1966219 145 -   2117846 AC----AAGGGACTTCTGTGGTAATGTGAAGGTAACCCTTGGCTAACAAAG--GTAAAAACACCAAGCTGGTGCTTCTT--CAGAATCATAAAGTG-TAAGTTATTCTACTGAATGT---GAAGGCAGTTTGACTTCCTAATGAGCTGTTCTCTGGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46111315  95 -  69331447 -------------------------------------------------------------GTCAGGCTGGGGCTTCTTCACAGAATCACGAAATG-CAAGTTATTCTATTGAAAATGAAGGAAAGATTTTGACTTCCTGACAAGCTGTTCTGAGGG
i canFam3.chr10             I 83 C 0
e mm10.chr15                 82832840 662 + 104043685 I

a score=917399.000000
s hg38.chr22_GL383582v2_alt     98686 269 +    162811 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGC-ATGTCCAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT---------------------------TTCCCCTTGA-------CATGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGGGCTCTTTTCTTTGATATTTAAGTTCCCTTAGGAGTTGATGGTATCGACTTCAGAAGTATAATAATCTTTTCTTtttat---tcat
s panTro4.chr22              40922732 269 +  49737984 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGC-ATGTCCAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT---------------------------TTCCCCTTGA-------CGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGGGCTCTTTTCTTTGATATTTAAGTTCCCTTAGGAGTTGATGGTATCGACTTCAGAAGTATAATAATCTTTTCTTtttat---tcat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464418 270 +  46535552 ACTTTTAATTTGCCTTATTAATGTGTGAATCCTGATTCCACAGCATAAAACTGCAATGTCCAGAAAGCAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCT---------------------------TTCCCCTTGA-------TGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCCTTAAGAGTTGATGGTATCGACTTCAGAAGTATAATCATCTTTTCTTtttat---tcat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106671881 261 - 115148730 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCCTAAAACTGCAATGTCCAGAAAGTGGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGTCC---------------------------TTCCCCTTGA-------CGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTC-------TTTAAGTTCCCTTATGAGTTGATGGAATCGACTTCAGAAGTATAATGATCTTT--CTTTTAT---TCAT
i nomLeu3.chr7b             C 0 M 100
s rheMac3.chr10              86976532 270 +  95678458 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGACT---------------------------TTCCCCCTGA-------CGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCTTTATGAGTTGATGGTATCGACTTCAGAAGTATAATAATCTTTTCTTtttat---tcat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87631278 270 -  96509753 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGACT---------------------------TTCCCCCTGA-------CGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCTTTATGAGTTGATGGTATCGACTTCAGAAGTATAATAATCTTTTCTTtttat---tcat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82459626 270 +  90941950 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATCAGGCTGGACT---------------------------TTCCCCCTGA-------CGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCtcttttctttgatatttaaGTTCCCTTATGAGTTGATGGTATTGACTTCAGAAGTataataatcttttctttttat---tcat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24720517 270 +  33263144 ACTTTTAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCATAAAACTGCAATGTACAGAAAGTAGAAACATGGGTTGGATGAAAATTAATAACAACTTGATCAGGCTGGACT---------------------------TTCCCCCTGA-------TGTGCAGGTTTCTCTAAAGGTTGTAAGACACTGTGTGATCAAGGTGCCTTTTATTCTCAGTGCTCTTTTCTTTGATATTTAAGTTCCCTTATGAGTTGATGGTATCGACTTCAGAAGTATAATAATCTTTTCTTtttat---tcat
i chlSab2.chr19             I 300 C 0
s calJac3.chrUn_GL286373      1966364 263 -   2117846 ACTTTAAATTTGCCTTATTAATGTGTCAATCCTGATTCCACAGCACAAAACTGCTATGTCCAGCAAGCAGAAACATGGGTTGGATGAAAATTAATAAGAACTTGATTGGGCTGGTCT---------------------------TTCCCTCTGA-------CATGCAGGTTTCTCTAAAGGTTTTAAGAC----TGTGATCAAGGTGCCTTTTATTCTTAGTGCTCTTTCCTTTGATATGTAAGTTGCCTTAGAAATTGATGGTATCAACTCCAAAAGTATAATAATCTTT---Ttttat---tcat
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46111410 299 -  69331447 -CTTTTAATGTGCCTCATTAATATGTTGATTCTGAGTCTATGGCACAAAACTGCGAAGTCTAGAAACTGGAAACAAGGGTTGGAGGGAAAGGAATGAGAACTGGATCCGCTTGGGCTCTGTGGGCTGTTTGCTCTGCTCATTACTTTACCCTGAACAGAACCATACTGGTTTCTTTAAAGGTTTGAAGAGATTCTGTGATCAAGGAGCCTTTGATCCCCAGTGGACTTTGC-TTGGTATTTAAATTTTCTTA------AATGATATCAACTTCAGAAATACAAAGACTGTTCCTTTTTATTACTCAT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I

a score=442100.000000
s hg38.chr22_GL383582v2_alt     98955 175 +    162811 tctacaaatttttattgcatgcctgtgtgcaggg---------gctgaaatggggagccaaaagttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttaaacagtg-----atgtaaacagtacttcagagcgc--agacttaatgccaccaacctagttaaggaa
s panTro4.chr22              40923001 174 +  49737984 tctacaaatttttattgcatgcctgtgtgcaggg---------gctgaaatggggagcc-aaagttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttaaacagtg-----atgtaaacagtacttcagagcac--agacgtaatgccaccaacctagttaaggaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464688 174 +  46535552 tccacaaatttttattgcatgcctgtgtgcaggg---------gctgaaatggggagcc-aaagttcacctagtgtctaccctccaggagctcacagaatgatctgggggtaaagcaaaatttcaacagtg-----atgtaaacagtacttcagagcac--agaggtaatgtcactaacctagttaaggag
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86976802 176 +  95678458 tctataaatttttattgcatgcctgtgtgcaggg---------gctgaaatggggagcc-aaagttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaacagtg-----ctgtaaataatacttcagagcatagagaggtaatgtcaccaacctagttaaggag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87631548 176 -  96509753 tctacaaatttttattgcatgcctgtgtgcaggg---------gctgaaatggggagcc-aaagttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaacagtg-----atgtaaataatacttcagagcatagagaggtaatgtcaccaacctagttaaggag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82459896 176 +  90941950 tctacaaattTTTATTGCATGCCTGTGTGCAGGG---------GCTGAAATGGGGAGCC-AAAGTTCACCAAGTGTCTACCCTCCAGGAGCTCACAGAATGATGTGGGGGTAAAGCAAAATTTAAACAGTG-----ATGTAAATAATACTTCAGAGCATAGAGAGGTAATGTCACCAACCTAGTTAAGGAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24720787 176 +  33263144 tctacaaatttttattgcatgcctgtgtgcaggg---------gctgaaatgggaagcc-aaagttcaccaagtgtctaccctccaggagctcacagaatgatgtgggggtaaagcaaaatttaaacagtg-----atgtaaataatacttcagagcatagagaggtaatgtcaccaacctagttaaggag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1966627 174 -   2117846 tcaacaaatttttattgcatggctatgtgcagag---------gctgaaatggggagcc-aaagttcacctagtgtctaccctccaggagctcacagaatggtctgggggtaaagcaaaatttaaacagtg-----atgtaaatactacttcagggcat--ataggaaatgttgccaacctagttaaggag
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46111709 162 -  69331447 TCAACTCACTTTTATCCCATGCCTACGGGCAAGGCAAAGGGGCCCCAAACTGAGGATCC-AAAGTCCAGGTAGTGTCTGCCCTCAGGGAGCTTCCAGAACAGTCTGTGA------------------AGTGTTTCCATGTAAATAGGACTATAGACCTT--AGAGGTAGTGT-Gccaacctaag-------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I
e nomLeu3.chr7b             106672142 100 - 115148730 M

a score=146763.000000
s hg38.chr22_GL383582v2_alt     99130 50 +    162811 gtcaggaaagcattcttgagggagt-gtagcttgacctgagtcataaagag
s panTro4.chr22              40923175 50 +  49737984 gtcaggaaagcattcctgagggagt-gtagcttgacctgagtcataaagag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464862 50 +  46535552 gtcaggaaagcattcttgagggact-gtagcttgacctgagtcataaagag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106672246 49 - 115148730 gtcaggaaagcattcttgagggagt-gtagcttga-ctgagtcataaagag
i nomLeu3.chr7b             M 100 C 0
s rheMac3.chr10              86976978 49 +  95678458 gtcaggaaagcattcttgacagagc-gtagc-tgacctgagtcatcaagag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87631724 50 -  96509753 gtcaggaaagcattcttgacagagc-gtagcttgacctgagtcatcaagag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82460072 50 +  90941950 GTCAGGAAAGCATTCTTGACAGAGC-GTAGCTTGACCTGAGTCATCAAGAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24720963 50 +  33263144 gtcaggaaagcattcttgacagagt-gtagcttgacctgagtcatcaagag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1966801 51 -   2117846 gtcagaaaggcattcttgagggagtcatttattgacctgagtcataaagaa
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46111871 46 -  69331447 gttaggaatgcattcttgaggcagt-gttgcttaagc--agttgcaaag--
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I

a score=1448923.000000
s hg38.chr22_GL383582v2_alt     99180 565 +    162811  
s panTro4.chr22              40923225 565 +  49737984  
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106672295 566 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86977027 564 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87631774 567 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82460122 567 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24721013 567 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1966852 568 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46111917 596 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82832840 662 + 104043685 I
e ponAbe2.chr22              37464912   0 +  46535552 C

a score=244663.000000
s hg38.chr22_GL383582v2_alt     99745  76 +    162811 -TGAGTAAACTGATTGTTTTCCGTTGTCTTAGAGTTATGATTCTG-TATTAAGAGTATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG
s panTro4.chr22              40923790  76 +  49737984 -TGAGTAAACTGATTGTTTTCCATTGTCTTAGAGTTATGATTCTG-TATTAAGAGTATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464912  76 +  46535552 -tgagtaAACTGATTGTTTTCCATTGCCTTAGAGTTATGATTCTG-TATTAAGAGTATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106672861  76 - 115148730 -TAAGTAAACTGATTGTTTTCCATTGCCTTAGAGTTATGATTCTG-TATTAAGAGTATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86977591  76 +  95678458 -TGAGTAAACTGATTGTTTTCCATTGCCTTAGAGTTATGATTCTG-TATTAAGAATATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87632341  76 -  96509753 -TGAGTAAACTGATTGTTTTCCATTGCCTTAGAGTTATGATTCTG-TATTAAGAATATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82460689  76 +  90941950 -TGAGTAAACTGATTGTTTTCCATTGCCTTAGAGTTATGATTCTG-TATTAAGAATATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24721580  76 +  33263144 -TGAGTAAACTGATTGTTTTCCATTGCCTTAGAGTTATGATTCTG-TATTAAGAATATTCTTA------------------------------TAAGA-------------------------------------------------CATGAGGAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1967420  73 -   2117846 -CGAGTAAA---ACTGTTTTCCACTGCCTTAGAGTTATGATTCTG-TATTAAGAATATTCTTG------------------------------TAAGA-------------------------------------------------CACGAGGAAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46112513 157 -  69331447 TGAATTAAACTAATTATTCTCTATTGCTGCAGAGTGATGATTCCATTATTAAGAATATTCTTAGGTAAAGACTAGGCTTTTTTTTtttttttttaagattttatttcagagaatgggagagaacatgcatgagtgaggggggtgcagcaagagggag
i canFam3.chr10             C 0 I 121
e mm10.chr15                 82832840 662 + 104043685 I

a score=1615521.000000
s hg38.chr22_GL383582v2_alt     99821 520 +    162811  
s panTro4.chr22              40923866 520 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37464988 531 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106672937 526 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86977667 519 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87632417 519 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82460765 519 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24721656 516 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1967493 505 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46112791 487 -  69331447  
i canFam3.chr10             I 121 I 91
e mm10.chr15                 82832840 662 + 104043685 I

a score=969773.000000
s hg38.chr22_GL383582v2_alt    100341 305 +    162811 CAGGGCAAAATAACCTGAACAGggccaag--taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagaaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggcactc-cctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaggtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG
s panTro4.chr22              40924386 305 +  49737984 CAGGGCAAAATAACCTGAACAGggccagg--taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagaaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggcactc-cctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaggtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37465519 306 +  46535552 CTGGGCAAAAGAACCTGAACAGggccagg--taaggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagagaggccctgtctctacgaaaaataaaattaaatttgctgggtgtgttggcactcgcctgtagtcccagctattcaggaggctgaggcaggaggactgctcaagcccatgaggtcaaggctgcagccaactatgaccacaccactgcattccagcctggatgaccgggcaagaccttgACTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106673463 306 - 115148730 CAGGGCAAAAGAACCTGAATAGggccagg--taaggtggcccatgtctgttatcccagcactttgggaggttggggtgggaggactgcctgaggccaggagttcaagattagcctgggcaacaaagagaggccccgtctctataaaaaataaaattaaatttgctgggtgtgttggcgctcgcctgtagtcccagctattcaggaggctgaggcaagaggactgctcaagcccatgaggtcaaggcttcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86978186 308 +  95678458 CAGGGCAAAAGAACCTGAACAGGGCCAGGTCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggcgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggtaagaccttgACTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87632936 308 -  96509753 CAGGGCAAAAGAACCTGAACAGGGCCAGGTCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgACTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82461284 308 +  90941950 CAGGGCAAAAGAACCTGAACAGGGCCAGGTCTAAGGTGGCCcatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcaggaggttgaggcaggaggattgctcaagcccatgaggtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24722172 308 +  33263144 CAGGGCAAAAGAACCTGAACAGGGCCAGGTCTAAggtggcccatgtctgttatcccagcactttgggaggttgaggtgggaggattgcctgaggccaggagttcaagattagcctgggcaacaaagcaaggccctgtctctacaaaaaataaaattaaatttgctgggtgtgttggtgctcgcctgtagtcccagctattcagcaggctgaggcaggaggattgctcaagcccatgaggtcaaggctgcagccaactatgatcacaccactgcattccagcctggatgacagggcaagaccttgactG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1967998 306 -   2117846 CAGGGCAAAAGAACCTGAACAGggacagg--cgaggtagtccatacctgttatgccagcactttggaacgctgaggtaggaggatggcctgaggccaggagttcaagactagcctgggcaacaaagggaggccctgtctctacaaaaagtaaaattaaatttgctgggtgtcttgacacttgcctctagtcccagctattcaggaggctgaggtaggaggattgttcaagcccatgaggtcaaggctgcagccaactatgatcataccactgtattccagcctggatgacagggcaagactttgACTG
i calJac3.chrUn_GL286373    C 0 I 188
e mm10.chr15                 82832840 662 + 104043685 I
e canFam3.chr10              46113278  91 -  69331447 I

a score=6312.000000
s hg38.chr22_GL383582v2_alt    100646 17 +    162811 acacaca-caca---------------------------------cacaca
s panTro4.chr22              40924691 50 +  49737984 acacaca-cacacacacacacacacacacacacacacacacacaccacaca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37465825 18 +  46535552 ACACACACCACA---------------------------------CACACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106673769 13 - 115148730 ACACACC--------------------------------------CACACA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86978494  9 +  95678458 ACA------------------------------------------CACACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87633244  9 -  96509753 ACA------------------------------------------CACACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82461592  9 +  90941950 aca------------------------------------------cacaca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24722480  9 +  33263144 ACA------------------------------------------CACACA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1968492 17 -   2117846 acacaca-caca---------------------------------cacaca
i calJac3.chrUn_GL286373    I 188 C 0
e mm10.chr15                 82832840 662 + 104043685 I
e canFam3.chr10              46113278 91 -  69331447 I

a score=755009.000000
s hg38.chr22_GL383582v2_alt    100663 247 +    162811 cacacCCTGCACATACTTCCCAGGAA---GTACCAGCACTGATCCCTAGTCATTT--TGTTACTCTCTAGTCCCATGTGGAATGGATGGTCCCTTGAAACTACAAAGGCCGTCTGTGCTTGTCTGCAAGGCTA---------TGGGCAGCAGCACAGACATCCAGGAGGAGTTAAAGCT---AACAATCTACTATTGCT-ACTAAAC-CAAACCCAGCTATGCTGCCACACAAAGGGGTTCCTTTTG------------TCTATTTAGAGCGTATTTT
s panTro4.chr22              40924741 249 +  49737984 cacacCCTGCACATACTTCCCAGGAA---GTACCAGCACTGATCCCTAGTCATTTTCTGTTACTCTCTAGTCCCATGTGGAATGGATGGTCCCTTGAAACTACAAAGGCCGTCTGTGCTTGTCTGCAAAGCTA---------TGGGCAGCAGCACAGACATCCAGGAGGAGTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAACCCAGCTATGCTGCCACACAAAGGGGTTCCTTTTG------------TCTATTTAGAGCGTATTTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37465843 249 +  46535552 CACACCCTGCAGATACTTCCCAGGAA---GTGCCAGCACTGATACCTAGTCATTTTCTGTTACTCTCTAGTCCCATGTGGAATGGATGGTCCCTTGAAACTACAAAGGCCCTCTGTGCTTGTCTGCAAGGCTC---------TGGGCAGCAGCACAGACATCCAGGAAGAGTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAATCCAGCTATGCTGCCACACAAAGGGCTTCCTTTTG------------TCTATTCAGAGCGTATTTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106673782 248 - 115148730 CACACCCTGCACATACTTCCCAGGAA---GTGCCAGCACTGATCCCTAGTCATTTTCTGTTACTCTCTAGTCCCATGTGGAATGGATGGTCCCTTGAAACTACAAAGGCCCTCTGTGCTTGTCTGCAAGGCTA---------TGGGCAGCAGCACAGACACCCAGGAGGAGTTAAAGCT---AACAATCTACTATTGCT-ATTAAAC-CAAATCCAGCTATGCTGTCACAC-AAGGTGTTCCTTTTG------------TCTACTTAGAGCGTATTTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86978503 247 +  95678458 TACACCCTGCACATACTTCCCAGGAA---GTGCCAATACTGATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCCCTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGCAAGGCTA---------TGGGCAGCATCACAGACATCCAG---GAGTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG------------TCTATTTGGAGTGTATTTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87633253 247 -  96509753 TACACCCTGCACATACTTCCCAGGAA---GTGCCAATACTGATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCCCTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGCAAGGCTA---------TGGGCAGCATCACAGACATCCAG---GAGTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATGGGTGTTCCTTTTG------------TCTATTTGGAGTGTATTTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82461601 247 +  90941950 tacaccctgcACATACTTCCCAGGAA---GTGCCAATACTGATCCCTAGTCATTTGCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCCCTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGCAAGGCTA---------TGGGCAGCATCACAGACATCCAG---GAGTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG------------TCTATTTGGAGTGTATTTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24722489 247 +  33263144 TACACCCTGCACGTACTTCCCAGGAA---GTGCCAATACTGATCCCTAGTCATTTTCTGTTACTCTCTATTCCCATGTGGAGTGGATGGTCCCTTGAAACTACAAAGGCCCTCTAGGCTTGTCTGCAAGGCTA---------TGGGCAGCATCACAGACATCCAG---GAGTTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCTGCCACACATAGGTGTTCCTTTTG------------TCTATTTGGAGTGTATTTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1968509 247 -   2117846 cacCCCTTGCACATACTTCCCAAGAG---GTGCCAGTAGCAATCCCTAGTCATTTTCTGTTACTCTCTACTCCCACGTGGAATGGATGGTCCCTTGAAACTACAAAGGCCCTCTGGGCTTG-CTGCATGGCTA---------TGGGGAGCAGCACAGATATCCAGGAGGAGCTAATGCT---AACAATCTACTACTGCTGATTAAAC-CAAACCCAGCTATGCCGCCACACATAGCTGCTCCTTTTG------------TCTATTTAGAGCATATT--
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46113369 248 -  69331447 GATATCCTGCATAAAAATAGAAGGAAAATATCCCAGTACTGAT---------------------------TCCCACAAGGAATGGACGGCCCCCTG-AACAACCAGTGCCTTCTGGGCTAATCTTCAAGGCCAAGCCAGAGGTGGGCAGCAGCACAGACATCCAG-AAGAGCTGGCTCTTAAAACAACCCACCACTAGCGACTAAACTTAAAGGGAGGTATGTTGCTACTTATATGCACTTGTTTTGAACATTTATCTTTTTATTGGGACCTTTTTA-
i canFam3.chr10             I 91 C 0
e mm10.chr15                 82832840 662 + 104043685 I

a score=1491923.000000
s hg38.chr22_GL383582v2_alt    100910 417 +    162811 ACAGGTCAGACAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGCTTTACTATGTACACTTTATTGATGATG---TTTAAGTAACATGTGAAAATA---TGGCAGGTGATACTAATAATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCACACATGGTATGAACTTCAACTGCAGATATGGTAGG--CAGATATCAGCCACTTGCTGTGGGTTTTTAATGTTCTGTAACACTGT-AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTATGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTATG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG
s panTro4.chr22              40924990 421 +  49737984 ACAGGTCAGACACAGTAGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGCTTTACTATGTACACTTGATTGATGATG--TTTTAAGTAACATGTGAAAATA---TGGCAGGTGATACTAATAATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCACACATGGTATGAACTTCAACTGCACATATGGTAGG--CAGATATCAGCCACTTGCTGTGGGTTTTTAATGTTCTATAACACTGT-AACTCTAATTATCCTGAGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAACATTACTCAAGAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466092 418 +  46535552 ACAGGTGAGGCAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGCTTTAGTATGTACACTTTATTGATGATAATGTTTAAGTAACATGTGAAAATA---TGGCAGGTGATACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATGGTAGG--CAGATATCAGCCACTTGCTGTGGGTTTTTAATGTTGTATAACACCGT-AACTCTAATTATCCTGGGTTTAAAGCGTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAACAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----T--CCCTTCTGGAAAATTAAAGCATTACTCAAGAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106674030 420 - 115148730 ACAGGTCAGGCAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGCTTTAGTATGTACACTTTATTAATGATAATGTTTAAGTAACATGTGAAAATA---TGGCAGGTGATACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCGTAATTATCATACATGGTATGAACTTCAACTGCAAACATGGTAGG--CAGATATCAGCCACTTGCTGTGGGTTTTTAATGTTCTATAACACCGTAAACTCCAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTATGGAGGCAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCA-TACTCAAGAAG
i nomLeu3.chr7b             C 0 M 166
s rheMac3.chr10              86978750 420 +  95678458 ACAGGTCAGGCAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGTTTTAGTATGTACACTTTATTGATGATAATGTTAAAGTAGCACATAAAAATA---TGGCAGGTGCTACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATGGTAGG--CAGATATCAGCCACTTGCTGTAGGTTTTTAATGTTCTACAACACCGT-AACTCTAATTATCCTGGGTTTACAGCTTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87633500 420 -  96509753 ACAGGTCAGGCAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGTTTTAGTATGTACACTTTATTGATGATAATGTTAAAGTAACACATAAAAATA---TGGCAGGTGCTACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATGGTAGG--CAGATATCAGCCACTTGCTGTAGGTTTTTAATGTTCTACAACACCGT-AACTCTAATTATCCTGGGTTTACAGCTTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82461848 420 +  90941950 ACAGGTCAGGCAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGTTTTAGTATGTACACTTTATTGATGATAATGTTAAagtaacacatgaaaata---tggCAGGTGCTACTAATTATTTCTACCAAGGTGCCCACAAAAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATGTTAGG--CAGATATCAGCCACTTGCTGTAAGTTTTTAATATTCTACAACACCGT-AACTCTAATTATCCTGGGTTTACAGCTTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24722736 420 +  33263144 ACAGATAAGGCAC---AGTATTTAACCA-CTTATTCCCCACCCTCAGCTATC-TGTTTTAGTATGTACACTTTATTGATGATAATGTTAAAGTAACACATGAAAATA---TGGCAGGTGCTACTAATTATTTCTACCAAGGTGCCCACAAGAAAGAA--AGTTCATAATTATCACACATGGTATGAACTTCAACTGCAGATATGGTAGG--CAGATATCAGCCACTTGCTGTAGGTTTTTAATGTTCTACAACACCAT-AACTCTAATTATCCTGGGTTTACAGCCTTCAGGTTCTGCATTAATA-----AATTTACGGAGGCAAAACAAAGGAGGAACAAAACACAATTTCCCAAAT-AAAATACATCCATTTGCCTCAATTTAAGTT-AAATCCAATCTTTG-----TCCCCCTTCTGGAAAATTAAAGCATTACTCAAGAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1968756 400 -   2117846 --------------------TTTAACCA-CTTATTCCCCACTATCAGCTATC-TACTTTTGTATGTACATTTTATTGATGATGATGTTTAATTAACATGTGAAAATACAGCAGCAGATGCTACTGATGAGATCTACCAAGCTGCTCACAAAGAAGAA--AATTCATAACAATCACACATGGTATGAACTTCAACTGCAGGTATGGTAGG--CAGATATGAGCAACTCACTATGGGTTTCTGATGCTCTATAACTCTGT-AACTCTAATTCTCCTGGGTTTACAGCCTTCAGGTTCTGCATTCATA-----AATTTACAAAGGTAAAACAAAGGAGGAACAAAAAACAATTTCCCAAAT-AAAGTACATCCATTGGCCTCAATTTAAGTT-AAATCCCATCT-----------GCATTCTGGAAAATTAAAGCATTACTCAACAAG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82833502 406 + 104043685 ACATTTCACGCAC---AATATCT----------TTACGTATGCTCAGTCATCTTGCTTCAGTGTGAGCACTACA-----GATGATGATAAACAAACATGTGGTACTG---AGGTGGGTAGCAGTAATTATTCCTAACAAGTTATCCATAAAGAGGAA--AGCTCATAATTATCACACATGGGCTGAACTTGATCTGTCATTATAGTAGGCACAGGTACTAGCCACTTGCTGTGGGTTTTAAATGCTCTGCAATTCCCT-AACTCCGATTCTCTGTAGTTT-TAGTCTTCAGGATCAGCAATAATAATAATAATTTAAGAAGGT-AAACAA---AGCAATCCAAAGCAATTTCACAAAC-AAAATTCATCCACTTGCAACAATTTAAGTTAAAATCCATTCCCCA-----T--TCCTTCTAG-GTATTAAAACATTACTCACAAG-
i mm10.chr15                I 662 C 0
s canFam3.chr10              46113617 394 -  69331447 ACAGGTCAGGCAC---AGTATTCCCCCCTCTTTATTCCCACCCTCAATTATA-TGTCTTAATATAAACACT--ACTGATGAAAATGTTCTAAACATAACTAATACTA---GTTCAGGTACTAGTGATTATTTCTACCAGGGTGCCCACAAAGCTGGAACAGTTTATGATGATCACGCATGGAATAAACTTCAACTGTGGATGTG----------------GCCACCTGCCATGGGTTTTAAATGTTCTATAATTCCCT-AATTC------TCCTGGGTTTTCAGTCTTCAGCTTCAGCAGTAATA-----AATTTATGTAGGCAAAACAAA-------------ATAATTTCCCTAATAAAAATGTAACCACTTGTCACAATTTAAGTT-AAAACCAGTCTTCACGCCCTCCCTTTTCTAGAATGTTAAAGTGTTACGGAAGACA
i canFam3.chr10             C 0 C 0

a score=340178.000000
s hg38.chr22_GL383582v2_alt    101327 127 +    162811 GCCTGGTTTAGTAATTTTTCTCTTGCACAAAATGTATACGTAGTTTGTTATAATGTTAATATGAAGTCTCATAACTCAGAAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
s panTro4.chr22              40925411 127 +  49737984 GCCTGGTTTAGTAATTTTTCTCTTGCACAAAATGTATACGTAGTTTGTTATAATGTTAATATGAAGTCTCATAACTCAGAAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466510 127 +  46535552 GCCTGGTTTGGTAATTTTTCTCTTGCACAAAATGTATACATAGTTTGTTATAATGTTAATACGAAGTCTCATAACTCAGAAGGCCAAC-ACAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86979170 127 +  95678458 GCTTGGTTTAGTAATTTTTCTCTTGCACAAGATGTATACGTAGTTTGTTATAATGTTAATACGAAGTCTCGTAACTCAGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87633920 127 -  96509753 GCTTGGTTTAGTAATTTTTCTCTTGCACAAGATGTATACGTAGTTTGTTATAATGTTAATACGAAGTCTCGTAACTCAGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462268 127 +  90941950 GCTTGGTTTAGTAATTTTTCTCTTGCACAAGATGTATACGTAGTTTGTTATAATGTTAATACGAAGTCTCATAACTCCGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723156 127 +  33263144 GCTTGGTTTAGTAATTTTTCTCTGGCACAAGATGTATACGTAGTTTGTTATAATGTTAATACAAAGTCTCATAACTCAGAAGGCCAAC-GCAGGTGTCACTAAT---GATGTTTCTTTGTGCTAACCAAAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969156 127 -   2117846 GCTTGGTTTAGTAATTTTTCTCTTGGACAAAACATATACATCATTTGTTATAATGTTAATACAATGTCTTATCACTCAGAAGGCCAAC-AAAGGCGTCAATAAT---GAAGTTTCTTTGTGCTAACTAAAC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82833908 114 + 104043685 GTTTGCTTTAGTCATGTTTCTCTTG--CAAAGTACACCCATATTCT----TACTGTCAGAACTATGG-TTATTATGC-----GCCAGCAACAGGCTTCAGCAGT---GATGGTTCTGTGGGCTGTCCAG--
i mm10.chr15                C 0 C 0
s canFam3.chr10              46114011 106 -  69331447 GCTTGGTT--------TTTCTTTTACACAAAATGTATATA---TTCTTCATAATTCTA---------CTTAT----CAAAAAGTCTGC-ATAGGTTTTGCTAATAAGGATGTGTCTTTGGGCTAACCAGAC
i canFam3.chr10             C 0 I 37
e nomLeu3.chr7b             106674450 166 - 115148730 M

a score=54856.000000
s hg38.chr22_GL383582v2_alt    101454 25 +    162811 TTGCCTTTTTTTCTGAAACACAGTT
s panTro4.chr22              40925538 25 +  49737984 TTGCCTTTTTTTCTGAAACACAGTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466637 25 +  46535552 TTGCCTTTTTTTCTGAAACACAGTT
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86979297 25 +  95678458 TTGCCTTTTTTTCTGAAACACGGTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634047 25 -  96509753 TTGCCTTTTTTTCTGAAACACAGTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462395 25 +  90941950 Ttgcctttttttctgaaacacagtt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723283 25 +  33263144 TTGCCTTTTTTTCTGAAACACAGTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969283 22 -   2117846 TGGCC-TTTCTTCTGAAACA--GTT
i calJac3.chrUn_GL286373    C 0 I 283
s mm10.chr15                 82834022 20 + 104043685 CTGCTTGTTTTT-----AATTGGTT
i mm10.chr15                C 0 C 0
e canFam3.chr10              46114117 37 -  69331447 I
e nomLeu3.chr7b             106674450 166 - 115148730 M

a score=87543.000000
s hg38.chr22_GL383582v2_alt    101479 37 +    162811 TGCAttttattattattttttagatggagtctcactc
s panTro4.chr22              40925563 37 +  49737984 TGCAttttattattattttttagatggagtctcactc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466662 37 +  46535552 TGCAttttattattatttttgagacggagcctcactc
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86979322 37 +  95678458 TGCAttttattattatttctgagacggagtctcacgc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634072 37 -  96509753 TGCAttttattattatttctgagacggagtctcacgc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462420 37 +  90941950 tgcattttattattatttttgagacagagtctcacgc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723308 37 +  33263144 TGCAttttattattatttttgagacggagtctcacgc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969588 37 -   2117846 TGCAttttattattatttttgagatagagtctcacgc
i calJac3.chrUn_GL286373    I 283 C 0
s mm10.chr15                 82834042 17 + 104043685 TGTATTTTAT--------------------CTTACTC
i mm10.chr15                C 0 C 0
e canFam3.chr10              46114117 37 -  69331447 I
e nomLeu3.chr7b             106674450 166 - 115148730 M

a score=39683.000000
s hg38.chr22_GL383582v2_alt    101516 19 +    162811 tgttgcccaggctggagt-a
s panTro4.chr22              40925600 19 +  49737984 tgttgcccaggctggagt-a
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466699 20 +  46535552 tgttgcccaggctggagtgg
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              86979359 19 +  95678458 tgtcgcccaggctggagt-t
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634109 19 -  96509753 tgtcgcccaggctggagt-t
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462457 19 +  90941950 tgtcgcccaggctggagt-t
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723345 19 +  33263144 tgtcgcccaggctggagc-t
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969625 19 -   2117846 tgtggcccaggctagagt-g
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82834059  0 + 104043685 C
e canFam3.chr10              46114117 37 -  69331447 I
e nomLeu3.chr7b             106674450 166 - 115148730 M

a score=334750.000000
s hg38.chr22_GL383582v2_alt    101535 114 +    162811 cagtgacgagatcttggctcactgaaacctctacctccc-gggttcaagtgatgctcctgccttagcctctaaagtagct---ggattacaggcacccaccatcacgtccagctaact
s panTro4.chr22              40925619 114 +  49737984 cagtgacgagatcttggctcactgaaacctctgcctccc-gggttcaagtgatgctcctgccttagcctctaaagtagct---ggattacaggcgcccaccaccacgtccagctaact
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466719 114 +  46535552 cagtgacgagatcttggctcaccgaaacctctacctcct-gggttcaagtgatgctcttgccttagcctctaaagtaact---ggattacaggcgcccaccaccacgtccagctaact
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106674619 115 - 115148730 cagtgatgagatctggtctcaacgaaacctctacctcccggggttcaagtgatgatcctgccttagcctctaaagtagct---ggattacaggtgcccaccaccacatccagctaact
i nomLeu3.chr7b             M 166 C 0
s rheMac3.chr10              86979378 114 +  95678458 cagtgatgagatcttggctcaccaaaacctctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggattacaggcacccaccaccacgtccagctaatt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634128 117 -  96509753 cagtgatgagatcttggctcaccaaaacctctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagctggaggattacaggcacccaccaccacgtccagctaatt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462476 114 +  90941950 cagtgatgagatcttggctcaccaaaacctctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggattacaggcacccaccaccacgtccagctaatt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723364 114 +  33263144 cagtgatgagatcttggctcaccaaaacctctgcctcct-gggttcaagtgattctcctgccttagcctctcaagtagct---ggattacaggcacccaccaccacgtccagctaatt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969644 114 -   2117846 cactggcaagatcttggctcaccaaaacctctgccttct-gggttcaagtgatgctcctgccttagcctcccgagtagct---ggattacaggttcacacctccatgcccagctaatt
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82834059   0 + 104043685 C
e canFam3.chr10              46114117  37 -  69331447 I

a score=36117.000000
s hg38.chr22_GL383582v2_alt    101649 10 +    162811 tttg--tatttt
s panTro4.chr22              40925733 10 +  49737984 tttg--tatttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466833 10 +  46535552 tttg--tatttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106674734 10 - 115148730 tttg--tatttt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86979492 10 +  95678458 tttg--tatttt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634245 10 -  96509753 tttg--tatttt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462590 10 +  90941950 tttg--tatttt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723478 10 +  33263144 tttg--tatttt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969758 12 -   2117846 tttgtatatttt
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46114154 10 -  69331447 TTTG--CATTTT
i canFam3.chr10             I 37 C 0
e mm10.chr15                 82834059  0 + 104043685 C

a score=345070.000000
s hg38.chr22_GL383582v2_alt    101659 124 +    162811 tagtagagacggggtttcaccatattggccaggctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------aaggtgatccaccctcctcggcctcccaaagtgcggggattacaggcatgagccactgcacccagccTGC
s panTro4.chr22              40925743 124 +  49737984 tagtagagacggggtttcgccatattggccaggctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------aaggtgatccactctcctcggcctcccaaagtgctgagattacaggcatgagccactgcacccagccTGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466843 124 +  46535552 tagtagagacagggtttcgccatgttggccaggctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------caagtgatccaccctcctcggcctcccaaagtgctgggattacagacatgagccactgcacccagccTGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106674744 124 - 115148730 tagtagagatggggttttgccatgttggccaagctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------caggtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgagccactgcacccagccTAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86979502 223 +  95678458 cagtagagaaagggttttgccatattggctaggctggtctcgaactcctgacctcaggtgatccaccctcctcggccttccaaagtgctaggattacaggcatgagcccagggttttgccatattggccaagctggtctcgcgctcctgacct------------------caggtgatccaccctcctcggccttccaaagtgctaggattacaggcatgagccatcacacccagccTGC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634255 124 -  96509753 cagtagagacagggttttgccatattggctaggctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------caggtgatccaccctcctcggccttccaaagtgctaggattacaggcatgagccatcacacccagccTGC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462600 124 +  90941950 tagtagagacagggttttgccatattggctaggctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------caggtgatccaccctcctcggcctcccaaagtgctaggattacaggcatgagccatcacacccagcctgc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723488 124 +  33263144 tagtagagacagggttttgccatattggctaggctggtctcgaa---------------------------------------------------------------------------------------------------ctcctgacct------------------caggtgatccaccctcctcggcctcccaaagtgctaggattacaggcatgagccatcacacccagccTGC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969770 142 -   2117846 cagtagagacaggattttgccatgtcggccaggctggtcttgaa---------------------------------------------------------------------------------------------------ctcctgacctccaggagttcgagtgatccaggtgacccactctcctcgacctcccaaagtgctgagattataggcatgagccactgtgctcggccTGC
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82834059   0 + 104043685 C
e canFam3.chr10              46114164   0 -  69331447 C

a score=51597.000000
s hg38.chr22_GL383582v2_alt    101783 14 +    162811 ATTTTATCTTATCT
s panTro4.chr22              40925867 14 +  49737984 ATTTTATCTTATCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466967 14 +  46535552 ATTTTATCTTATCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106674868 14 - 115148730 ATTTTATCTTATCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86979725 14 +  95678458 ATTTTATCTTATCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634379 14 -  96509753 ATTTTATCTTATCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462724 14 +  90941950 aTTTTATCTTATCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723612 14 +  33263144 ATTTTATCTTATCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969912 14 -   2117846 ATTTTATCTTATCT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46114164  9 -  69331447 -----ATCTTACCT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82834059  0 + 104043685 C

a score=3197703.000000
s hg38.chr22_GL383582v2_alt    101797 892 +    162811  
s panTro4.chr22              40925881 889 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37466981 895 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106674882 891 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86979739 886 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87634393 891 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82462738 885 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24723626 889 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1969926 881 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82834059 835 + 104043685  
i mm10.chr15                C 0 I 410
s canFam3.chr10              46114173 892 -  69331447  
i canFam3.chr10             C 0 C 0

a score=335049.000000
s hg38.chr22_GL383582v2_alt    102689  93 +    162811 CTGGAAGTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGACAGACACTGGAGG----------------CTCAGGAAATAGCAGAGTCCCAGCAGAAAGGAACTT
s panTro4.chr22              40926770 109 +  49737984 CTGGAAGTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGACAGACACTGGAGGCCCTTAGTCCCAGTTACTCAGGAAATAGCAGAGTCCCAGCAGAAAGGAACTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37467876 106 +  46535552 CTGGAAGTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGACAGACACTGGAGGCACTTAGTCCCAGCTACTCAGGAAAT---AGAGTCCCAGCAGAAAGGAACTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106675773 106 - 115148730 CTGGAAGTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGACAGACACTGGAGGCACTTAGTTCCAGCTACTCAGGAAAT---AGAGTCCCAGCAGAAAGGAACTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86980625 109 +  95678458 CTGGAACTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGAGAAACACTGGAGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCAGCAGAAAGGAACGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87635284 109 -  96509753 CTGGAACTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTAACAGGAGAAACACTGGAGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCAGCAGAAAGGAACGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82463623 109 +  90941950 CTGGAACTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGAGAAACACTGGAGGCACttagtctcagatactcaggaaaTAACAGAGTCCCAGCAGAAAGGAACGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24724515 109 +  33263144 CTGGAAGTGGCAAGTTTTTCAAAGGCAGGGGCAGCCTGACAGGAGAAACACTGGAGGCACTTAGTCTCAGATACTCAGGAAATAACAGAGTCCCAGCAGAAAGGAACGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1970807 109 -   2117846 CTGGAAGTGGCAAGTTTTTCAAAGGCAGGAGCAGCCTGACAAGAGACACACTGAAGGCACTTGATCCCAACTACTCAGGAGATAGCAGAGTCCCAGCAGAAAGGAACTT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46115065  94 -  69331447 -CTGAAGCAGCAAGTCCTACAAGGGCAGAGCCAGTCTGAAAGG--GGGCAGGGGAGGCACTT------------TTATATAGAGGCAGAGCTCTAGCAAAAGGGAACCT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82834894 410 + 104043685 I

a score=962805.000000
s hg38.chr22_GL383582v2_alt    102782 302 +    162811 TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA-CCACAGGATCACTGGTCCTCAAATCCT-AAGCCAGCCCCTG---CCACCTCTCAGCCA-----------AGC-TTCAGTGGGGTCATTTAATTTGGCAACAACATGAGACATAGTCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAAACCGGGGCCTTTTCTTCCTGGAAACC--T---ACTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTCAGTTTTCAGAA
s panTro4.chr22              40926879 305 +  49737984 TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA-CCACAGGATCACTGGTCCTCAAATCCT-AAGCCAGCCCCCGCCACCACCTCTCAGCCA-----------AGC-TTCAGTGGGGTCATTTAATTTGGCAACAACATGAGACATAGTCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAAACCGGGGCCTTTTCTTCCTGGAAACC--T---ACTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTCAGTTTTCAGAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37467982 296 +  46535552 TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA-CCA------TACTGGTCCTCAAATCCT-AAGCCAGCCCCCG---CCACCTCTCAGCCA-----------AGC-TTCAGTGGGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAACCAGGTGCCTTTTCTTCCTGGAAACC--T---ACTGGAAGGAAAAACTACATCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTCAGTTTTCAGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106675879 302 - 115148730 TCAAAAACGAGGATATCTTGATATACTGAAGCTAATGCCAATG-----AAACTA-CCATAGGATCACTGGTCCTCAAATCCT-AAGCCAGCCCCCG---CCACCTCTCAGCCA-----------AGC-TTCGGTGGGGTCATTTAATTTGGCAATAACATGAGACATGGCCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAACCAGGGGCCTTTTCTTCCTGGAAACC--T---ACTGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTCAGTTTTCAGAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86980734 301 +  95678458 TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA-CCATGGGATCACTGGTCCTCAAATCCT-AAGCCAGCCCCTG---CCACCTCTCAGCCA-----------AGC-TTCAGTGTGGTCATTTAATTTGGCAATAACATGAGAC-TAGCCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC--T---ACCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTGAGTTTTCAGAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87635393 301 -  96509753 TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA-CCATAGGATCACTGGTCCTCAAATCCT-AAGCCAGCCCCTG---CCACCTCTCAGCCA-----------AGC-TTCAGTGTGGTCATTTAATTTGGCAATAACATGAGAC-TAGCCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC--T---ACCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTGAGTTTTCAGAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82463732 302 +  90941950 TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCGATG-----AAACAA-CCATAGGATCACTGGTCCTCAAATCCT-AAGCCAGCCCCTG---CCACCTCTCAGCCA-----------AGC-TTCAGTGTGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC--T---ACCGGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTGAGTTTTCCGag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24724624 302 +  33263144 TCAAAAACGAGGATATCTTGATATACTGAAGCTACTGCCAATG-----AAACAA-CCATAGGATCACTGGTCCTCAAATCCT-AAGCCAGTCCCTG---CCACCTCTCAGCCA-----------AGC-TTCAGTGTGGTCATTTAATTTGGCAATAACATGAGACATAGCCTCACATCTCATTTCAGGTC---ACTCCCACAGGTCATGCTCAATCCAGGGCCTTTTCTTCCTGGAAACC--T---ACCAGAAGGAAAAACTACGTCCACA-CTAGAATGGAAACTTTGGCACCCAAATCTGTGACTAGCTTATGAACCTTGAGTTTTCAGAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1970916 293 -   2117846 TCAAAATTGAGGATACCATGGTGTACTGAAGCTACTGCTAATGAAACTAAACTA-CCATAGGATCACTGGTCCTGAAATCCT-AAGCCAGCTGGCT---CCACCTCTCAGCCA-----------AGC-TTCAGTGGGCTCATTTAATGTGGCAATAACATGAGACATCCCCTCAAATCTTTT------------------CAGGTCATGCTCAACCCAGGGCCTTTTCTTCCTGGAAACC--T---ACTGGAAGGAAAAAGTATATGCACACCTAGAATGTAAACTTTGACACCCAAATCTGTAACTAGCTTATGAACCTTGAGTTTTCAGCG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82835304 261 + 104043685 TCAACCATATGGAAATGGTAGCTTATTTAAGTTACTGTCGGTGA----AAACTG-CTCACAGATCA-TAGTTCCCACACTCA-AGGTTAACCACTG--------TCCTAGCCA-----------GGCATTAGGAAAGGTCATATTCTGTG-----------------------------CATTTCAGGTC---ACTC-------TGATTCCCA---CGAGCATTCTTATTCCTGCTAACTTGT---ACTGGAAGGCAAAGGTTGGTCTAGA-TCTTCAAGAGCACTATAGTGCTCAGGTCTGAGACCAACTCACCAATACTGAGTTCTCTGAA
i mm10.chr15                I 410 C 0
s canFam3.chr10              46115159 281 -  69331447 GAAAAAACTAGGATGTCTTGGCACATTTAAGCTACCACCAATA-----CAGCTCTCCATAGGGCTATGGGTCCCCACATCCTGAAGCCAGC---TG---CCAGATCCCAGCAACCCTTTCTGGGGGC-TTTA-TGGGGCCACTTCATGAGGTGTTAATGTGTGAG--------ACACCTCACTTTAGATCTGAACCCTCACG--------------------TTTTTCTTCCCAGAAACC--TTACACTGGAAGGAAACAGTTGGTCCAAACCTAGTGTGGAGAC--TGGTACCAAAAT-------TAGTTGACTAGTTttcttttttaagat
i canFam3.chr10             C 0 I 443

a score=650578.000000
s hg38.chr22_GL383582v2_alt    103084 205 +    162811 TTGATTTTTGCATTTCTCAAAGGGTAAC----TCTGCCACCTGCACCAGCATGGTCCTAAGC-----TTGAGTTAAAAA--------------ACACAGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAGG----TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATATGGAAATTTTCTTCTACA-TTTCTGTTTCA
s panTro4.chr22              40927184 203 +  49737984 TTGATTTTTGCATTTCTCAAAGGGTAAC----TCTGCCACCTGCACCAGCATGGTCCTAAGC-----TTGAGTTAAAAA----------------ACAGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAAG----TTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATATGGAAATTTTCTTCTATA-TTTCTGTTTCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37468278 223 +  46535552 TTGATTTTTGCATTTCTCAAAGTGTAAC----TCTGCCACCTGCACCAGCATGGTCCCAAGC-----TTGAGTTaaaaaaaaaaaaaaaaaaaaaaCAGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAGGTTGTTTCTTATCCTCAAGAAAGTTTTACAACTATTGGTTCAATTCATCTTCGTAAATGTGGAAATTTTCTTCTACA-TTTCTGTTTCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106676181 208 - 115148730 CTGATTTTTGCATTTCTCAAAGTGTAAC----TCTGCCACCTGCAACAGCATGGTCCCAAGC-----CTGAGCTAAAAA---------------AAAAGACTGAGGACACTGTCCCAGAAGAGACTGAATGGGAAGCATCCCAGGTTGTTTCTTATCCTCAAGAAAGTTTTAAAACTATTGGTTCAATTCATCTTCATAGATGTGGAAATTTTCTTCTACA-TTTCTGTTTCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981035 206 +  95678458 TTGATTTCTGCATTTCTCAAAGTGTAAC----TCTGCCACCAGCACCAGCATGGTCCCAAGC-----TTGAGTTAAAAA---------------AACAGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG-TGTTT-TTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGCGGAAACTTTCTTCTACA-TTTCCGTTTCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87635694 206 -  96509753 TTGATTTCTGCATTTCTCAAAGTGTAAC----TCTGCCACCAGCACCAGCATGGTCCCAAGC-----TTGAGTTAAAAA---------------AACAGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG-TGTTT-TTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGCGGAAACTTTCCTCTACA-TTTCCGTTTCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464034 207 +  90941950 ttgatttctgcatttctcaaAGTGTAAC----TCTGCCACCTGCACCAGCATGGTCCCAAGC-----TTGAGTTaaaaa---------------aaCAGACTGAGGACACTGTCCCAAAAAAGACTGAATGGGAAGCATCCCAGG-TGTTTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCTTCATAGATGTGGAAACTTTCTTCTACA-TTTCAGTTTCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24724926 207 +  33263144 TTGATTTCTGCATTTCTCAAAGTGTAAC----TCTGCCACCTGCACCAGCATGGTCCCAAGC-----TTGAGTTAAAAA---------------AACAGACTGAGGACACTGTCCCAAAAGAGACTGAATGGGAAGCATCCCAGG-TGTTTCTTATCCTCAAGAAAGTTTTAGAACTATTGGTTCAATTCATCCTCACAGATGTGGAAACTTTCTTCTACA-TTTCAGTTTCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971209 208 -   2117846 TTGACTTTTGCATTTCTCAAAGTGTAAC----TTTGGCACCTGCACCAACATGGTCCCAAGC-----TTGAATTAAAAT--------------ATGCAGCCTGAGGACATTATCCCAGAAGAGACTGAATGGGAAGCATCCTGGG-TGTTTCTTATCCTCAAGAAAGTTTAAGAACTATTGATTCAATTTATCTTCATGGATGTGGAAACTTTCTTCTACG-TTTCTGTTTCA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82835565 142 + 104043685 ATGACACCTCATTTTCT--------------------CACTTGTAGGTGCCCTGCCCAAAGTAAAAGGTGAGTTACAAA---------------AGGAAACTAAAGATACAACAC--------------TGGGAAACTGCTCAGC-----------TCCAAAGGTAAT-----GACTACAAGTTCAATCCA-------------------------CTACA-CTTCATCCTGA
i mm10.chr15                C 0 C 0
s canFam3.chr10              46115883 195 -  69331447 tttatttttatttttTTCAGAGTCCATTTTGGTCTGGCACCTG---------------AAGC-----ATGTGTTAACAA---------------TGCAGACAACAGCCACAACCC--AGAGAGACTGAATGTGCAGCATTCTAAG-TGTTTCTTATCCCCCCAAAAGTTTAAGAACTATTGGCTCAATTCAGCTTCATGGATATGGGCATTTTCTTCTTTATTTTCTATTTTA
i canFam3.chr10             I 443 I 403

a score=495052.000000
s hg38.chr22_GL383582v2_alt    103289 206 +    162811 GAAGATTCCTAC-------------CAGATTAGGAAGATACTC---AGCAAGAGTACAATCCTCATTTCAACAGAAAA---GGAAAAAG-----------GAAAAAAAGAAAAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACATCTCCTCCTCCTCCACCTACAC----------------ttttttttttttttg
s panTro4.chr22              40927387 204 +  49737984 GAAGATTCCTAC-------------CAGATTAGGAAGATACTC---AGCAAGAGTACAATCCTCATTTCAACAGAAAA---GGAAAAAG-----------GAAAAAAAGAAAAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACATCTCCTCCTCCTCCACCTACAC------------------ttttttttttttg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37468501 210 +  46535552 AAAGATTCTTAC-------------CAGATTAGGAAGATAGTC---AGCAAGAGTACAATCCTCATTTCAACAGaaaa---ggaaaaagcaaaaagga-aaaaaaaaaaaaaaggaaaCTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATATAT---CTCCTCCTCCACCTATAC-------------------tttttttttttg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106676389 201 - 115148730 GAAGATTCCTAC-------------CAGATTAGGAAGATACTC---GGCAAGAGTACAATCCTCATTTCAACAGaaaa---ggaaaaaggaaaaaa----aaaaaaaaaaaaaggaaaCTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATACAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACAT---CTTCTTCTCCACCTAC-------------------------tttttttg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981241 209 +  95678458 GAAGATTCCTAC-------------CAGATTAGGAAGATATTC---CGCAAGAGTACAATCTTCACTTCAACAGAAAAgggcggggggg-----------gggggcgggggAAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACGT---CTCCTCCTCCACCTTCAC-------------tttttttttttttttttg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87635900 200 -  96509753 GAAGATTCCTAC-------------CAGATTAGGAAGATACTC---CGCAAGAGTACAATCTTCACTTCAACAGAAAA----------G-----------GGGGGGGGGGGAAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACGT---CTCCTCCTCCACCTTCAC------------ttttttttttttttttttg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464241 195 +  90941950 GAAGATTCCTAC-------------CAGATTAGGAAGATACTC---CGCAAGAGTACAATCTTCACTTCAACAGAAAA--------Ggg-----------cggggagggggaaggaaactCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACGt---ctcctcctccaccttcac-------------------tttttttttttg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725133 218 +  33263144 GAAGATTCCTAC-------------CAGATTAGGAAGATACTC---AGCAAGAGTACAATCTTCACTTCAACAGAAgg----ggggggg-----------ggggcggggggAAGGAAACTCCAAGAGTCTCCATGAAGAAAATAGAGATCTGGAAGTAATATAACCAAGTTTAGAAATCCTGCATAATTCCTCAATACGT---CTCCTCCTCCACCTTCTTCttcttcttcttctttttttttttttttttg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971417 221 -   2117846 GAAGATTCCTAACTTTCTGCTCTTGCTGAGCAGGAAGATACTCTTGAGCAAGAGTCCAATCCTTACTTCAACAGAAAA---GGAAAAAAGAAAAGGGGCGGGGGTGGGGAGAAGGAAACTCCAAGAGTCTCCATGAAGAAAGTTGAGATCTGGAAGTAATATAACGAAGTTTAGAAATCCTGAATAATT-CTCAATACAT---CTCCACCTTCACC------------------------TTTTTGTTTTTT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82835707 144 + 104043685 TTTAGTTTCTCC-------------CAGG--AAGAAGA--------ATCGAGAAGCCAAGGGCTACTTCAACAG--------------G--------------------------------------------TGAAGAAAATGGAAATTTCCAAGTAACATGAC-AAGGTAAGAAACTC----TAATT----AAAATGT----TTCTCTCCTACCTCCAT--------------TTATTTTCTTTCATTTG
i mm10.chr15                C 0 I 426
e canFam3.chr10              46116078 403 -  69331447 I

a score=111022.000000
s hg38.chr22_GL383582v2_alt    103495 38 +    162811 agatagggtctcgctctgtcactcaTTCATCAagccaa
s panTro4.chr22              40927591 38 +  49737984 agatagggtctcactctgtcactcaTTCATCAagccaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37468711 38 +  46535552 agatagggtctcgctctgtcactcaTTCATCGAGCCAA
i ponAbe2.chr22             C 0 I 169
s nomLeu3.chr7b             106676590 38 - 115148730 agatagggtctcgctctgtcactcaTTCATCAagccaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981450 38 +  95678458 agacagggtctcactctgtccctcattcatcgagccaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87636100 38 -  96509753 agacagggtctcactctgtccctcattcatcgagccaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464436 38 +  90941950 agacagggtctcactctgtccctcattCATCGAGCcaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725351 38 +  33263144 agacagggtctcactctgtccctcattcatcgagccgg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971638 37 -   2117846 AGACAGGGTCTCACTCTGCCACTCATTCATCCAGCCA-
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82835851 426 + 104043685 I
e canFam3.chr10              46116078 403 -  69331447 I

a score=98267.000000
s hg38.chr22_GL383582v2_alt    103533 40 +    162811 agagtttgaggttgcagtgagctttgattgtgccactgta
s panTro4.chr22              40927629 40 +  49737984 agagtttgaggttgcagtgagctttgattgtgccactgta
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106676628 40 - 115148730 agagtctgaggttgcagtgagctttgattgtgccactgta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981488 40 +  95678458 agagtttgaggttgcagtgagctttgattgtgccactata
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87636138 40 -  96509753 agagtttgaggttgcagtgagctttgattgtgccactgta
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464474 40 +  90941950 agagtttgaggttgcagtgagctttgattgtgccactgta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725389 40 +  33263144 agagtttgaggttgcagtgagctttgattgtgccactgta
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971675 39 -   2117846 -GAGTTTCAGGTTGCAGTGAGCTTTGATTATACCTCTATA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82835851 426 + 104043685 I
e canFam3.chr10              46116078 403 -  69331447 I
e ponAbe2.chr22              37468749 169 +  46535552 I

a score=78668.000000
s hg38.chr22_GL383582v2_alt    103573 25 +    162811 ctcATagtggaacaatcagagctca
s panTro4.chr22              40927669 25 +  49737984 ctcATagtggagcaatcagagctca
i panTro4.chr22             C 0 I 980
s ponAbe2.chr22              37468918 25 +  46535552 CTCATagcggagcaatcagagctca
i ponAbe2.chr22             I 169 C 0
s nomLeu3.chr7b             106676668 25 - 115148730 ctcATagtggagcaatcagagctca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981528 25 +  95678458 ctcatagtggagcaatcagagctca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87636178 25 -  96509753 ctcatagtggagcaatcagagctca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464514 25 +  90941950 ctcataGTGgagcaatcagagctca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725429 25 +  33263144 ctcatagtggagcgatcagagctca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971714 25 -   2117846 CTCAcagtaaagcaatcagaactca
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82835851 426 + 104043685 I
e canFam3.chr10              46116078 403 -  69331447 I

a score=216293.000000
s hg38.chr22_GL383582v2_alt    103598 69 +    162811 ctgcaacctcaaattcctgggctagaggaatcctcttgcctctacttcct---tagtagctgggaccacagg
s panTro4.chr22              40928674 69 +  49737984 ctgcaacctcaaattcctgggctagaggaatcctcttgcctctacttcct---tagtagctgggaccacagg
i panTro4.chr22             I 980 C 0
s ponAbe2.chr22              37468943 72 +  46535552 ctgcaacctcaaattcctgggctagaggaatcctcttgcctctacttccttagtagtagctgggaccacagg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106676693 69 - 115148730 ctgcaatctcaaattcctgggctagaggaatcctcttgcctctacttcct---tagtagctgggaccactgg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981553 69 +  95678458 ctgcaacctcaaattcttgggctagaggaatcctcttgcttctatttcct---tagtagctgagaccacagg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87636203 69 -  96509753 ctgcaacctcaaattcttgggctagaggaatcctcttgcttctatttcct---tagtagctgagaccacagg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464539 69 +  90941950 ctgcaacctcaaattcttgggctagAGGAATCCTCTTGCTTCTATTTCct---tagtagctgagaccacagg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725454 69 +  33263144 ctgcaacctcaaattcctgggctagaggaatcctcttgcttctatttcct---tagtagctgagaccacagg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971739 69 -   2117846 ctgcaacctcaaatgcctgggctagcggaatcctcttgcctctacttcct---tagtagctgggaccatagg
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82835851 426 + 104043685 I
e canFam3.chr10              46116078 403 -  69331447 I

a score=480981.000000
s hg38.chr22_GL383582v2_alt    103667 152 +    162811 tgcataccactgcacttggctgattta----------ttttttgt---agagatggcatctcactttgttgcccaagctggtctcaaactcctg----ggcttaggcaatc----------------ctcctacctcagcctcctgaagtgat-gggattacagatgtgagccaccatgcccaggc
s panTro4.chr22              40928743 145 +  49737984 tgcataccactgcacttggctgattta----------ttttttgt---agagatggcatctcactttgttgcccaagctggtctcaaactcctg----ggcttaggcaatc----------------ctcctacctcagcctcctaaagtgat-gggattacagatgtga-------TGCCCAGGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37469015 152 +  46535552 tgcctaccactgcacgtggctgattta----------ttttttgt---ggagatggcatctcactttgttgcccaagctggtctcaaactcctg----ggcttaggcaatc----------------ctcctacctcagcctcctaacgtgat-gggattacaggtgtgagccaccatgcccagcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106676762 152 - 115148730 tgcacaccactgcacttggctaattta----------ttttttgt---agagatggcatctcactttgttgcccaagctggtctcaaactcctg----ggcttaggcaatc----------------ctcccacctcagcctcctaaagtgat-gggattacaggtgtgagccaccatgcccagcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981622 152 +  95678458 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgttgctcaagcaggtctcaaactcctg----ggcttaggcaatc----------------ctcccacctcagcctcctaaagtgat-gggattacaggtgtgagccaccatgccaagcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87636272 152 -  96509753 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgttgctcaagcaggtctcaaactcctg----ggcttaggcaatc----------------ctcccacctcagcctcctaaagtgat-gggattacaggtgtgagccaccatgccaagcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464608 152 +  90941950 tacataccactgcacttggctaattta----------ttttttgt---agagacatcatctcactttgttgctcaagcaggtctcaaactcctg----ggcttaggcaatc----------------ctcccacctcagcctcctaaagtgat-gggattacaggtgtgagccaccatgccaagcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725523 153 +  33263144 tacataccactgcacttggctaattta----------ttttttgt---agagacagcatctcactttgttgcccaagcaggtctcaaactcctg----ggcttaggcaatc----------------ctcccacctcagcctcctaaagtgatggggattacaggtgtgagccaccatgccaagcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971808 155 -   2117846 tgcatgccactgcacctggctaattta----------ttttttgtataagagacagtgtctcactttgttgcccaagctggtcttaaactcctg----gacttaggcaatc----------------ctcccacctaagcctcctaaagtgat-gggattataggtgtgagccaccatgcccagcc
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82836277 175 + 104043685 tgcatagcaa-gcattttactgaGTTACCCTAtttgttttgtttt---aaaaactgt-cctcac-ttgtagcccaggctatcctggaactaataatgcagctcaggctagcctgacatctaccatgtcttctgcttcagtct----aagtact-gggactataagtgtatgccaccatgcctagct
i mm10.chr15                I 426 C 0
e canFam3.chr10              46116078 403 -  69331447 I

a score=2707478.000000
s hg38.chr22_GL383582v2_alt    103819  849 +    162811  
s panTro4.chr22              40928888  849 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37469167  851 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106676914  847 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86981774  852 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87636424  852 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82464760  851 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24725676  848 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1971963  856 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82836452  834 + 104043685  
i mm10.chr15                C 0 I 29
s canFam3.chr10              46116481 1035 -  69331447  
i canFam3.chr10             I 403 C 0

a score=265797.000000
s hg38.chr22_GL383582v2_alt    104668 84 +    162811 CTACCAGGGATGCTTAACGCTTATC--CCTGTCCTGATGTACCCTAGTGAAGGAACAAGTTGTCACTTG-----------GCCCACAGTGAGAGGGC
s panTro4.chr22              40929737 84 +  49737984 CTACCAGGGATGCTTAACGCTTATC--CTTGTCCTGATGTACCCTAGTGAAGGAACAAGTTGTCACTTG-----------GCCCACAGTGAGAGGGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37470018 84 +  46535552 CTACCAGGGATGCTTAACGCTTATC--CCTGTCCTGATGTACCCCAGTGAAGGAACAAGTTGTCACCTG-----------GCCCACAGTGAGAGGGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106677761 84 - 115148730 CTACCAGGGATGCTTAATGCTTATC--CCTCTCCTGATGTACACTAGTGAAGGAACAAGTTGTCACTTG-----------GCCCACAGTGAGAGGGC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86982626 84 +  95678458 CTACCAGGGATGCTTAACACTTATC--GCTGTCCTGATGTACCCTAGTGAAGGAACAAGTCGTCACTTA-----------GCCCACAGTGAGAGGGC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87637276 84 -  96509753 CTACCAGGGATGCTTAACACTTATC--GCTGTCCTGATGTATCCTAGTGAAGGAACAAGTCGTCACCTA-----------GCCCACAGTGAGAGGGC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82465611 84 +  90941950 CTACCAGGGATGCTTAACACTTATC--GCTGTCCTCATGTACCCTAGTGAAGGAACAAGTCGTCACCTA-----------GCCCACAGTGAGAGGGC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24726524 84 +  33263144 CTACCAGGGATGCTTAACACTTATC--GCTGTCCTGATGTACCCTAGTGAAGGAACAAGTCGTCACCTA-----------GCCCACAGTGAGAGGGC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1972819 84 -   2117846 CTACCAAGGAGGCTTAACACTTATC--CCTGTCCTGATGCACCCTAGTGAAGGAAAAAGTTGTCACTTG-----------GCCCACAGTGAGAGAGC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46117516 81 -  69331447 --------AATGCT---CGCTCCTCCACCTCTACTG-----TCCCGGTAGAGGAGAAAGTCTTCTCTTGGACAGGGCCCAGCCCACAGGGAGTGTGC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82837286 29 + 104043685 I

a score=1848185.000000
s hg38.chr22_GL383582v2_alt    104752 553 +    162811  
s panTro4.chr22              40929821 553 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37470102 554 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106677845 554 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86982710 553 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87637360 553 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82465695 549 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24726608 558 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1972903 551 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82837315 535 + 104043685  
i mm10.chr15                I 29 C 0
s canFam3.chr10              46117597 463 -  69331447  
i canFam3.chr10             C 0 I 1127

a score=47787.000000
s hg38.chr22_GL383582v2_alt    105305 14 +    162811 TCTTGGGAGACCCT
s panTro4.chr22              40930374 14 +  49737984 TCTTGGGAGACCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37470656 14 +  46535552 TCTTGGGAGACCCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106678399 14 - 115148730 TCTTGGGAGACCCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86983263 14 +  95678458 TCTTGGGAGACCTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87637913 14 -  96509753 TCTTGGGAGACCTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82466244 14 +  90941950 TCTTGGGAGACCTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24727166 14 +  33263144 TCTTGGGAGACCTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1973454 14 -   2117846 TCTTGGGAGATCCT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82837850 14 + 104043685 TACTAGGGTACTCT
i mm10.chr15                C 0 I 1925
e canFam3.chr10              46118060 1127 -  69331447 I

a score=246614.000000
s hg38.chr22_GL383582v2_alt    105319 79 +    162811 GGAGGAAGAACAGGTTTGGTGGTGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
s panTro4.chr22              40930388 79 +  49737984 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37470670 79 +  46535552 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106678413 77 - 115148730 GGAGGGAGATC--TCTTGGTGGGGATTCAGGAGATGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86983277 79 +  95678458 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87637927 79 -  96509753 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82466258 79 +  90941950 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCACCCAGTGGCAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24727180 79 +  33263144 GGAGGAAGAACAGGTTTGGTGGGGATTCAGGAGTTGTGTTTTTCAACATTCAGGTGGCACTACATTCATCCAGTGGCAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1973468 79 -   2117846 GGAGGAAGAACAGATTTGGTGGGAATTTGGGAGTTGTTTTCTTCAACATTCAGGTTGCATTACATTCACCCAGTGGCAA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82837864 1925 + 104043685 I
e canFam3.chr10              46118060 1127 -  69331447 I

a score=925451.000000
s hg38.chr22_GL383582v2_alt    105398 283 +    162811 CTCACATTTTTGTCCCCAGAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAGGCAAAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATGCTGCTGGTCATCCATCTCTCATCA------TTTTTTTCCCC--AAAACTATA---------ACAGGA--AAAC--AAAAATCAGTCTCACTACCAAAACACAT-TTTAA--CATCTCCTTAAATT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTCCA
s panTro4.chr22              40930467 288 +  49737984 CTCACATTTTTGTCCCCAGAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAGGCAAAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATGCTGCTGGTCATCCATCTCTCATCC-ATTTTTTTTTTTCCCC--AAAACTATA---------ACAGGA--AAAC--AAAAATCAGTCTCACTACCAAAACACAT-TTTAA--CATCTCCTTAAATT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTCCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37470749 298 +  46535552 CTCACATTTTTGTCCCCAGAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAGGTAGAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATACTGCTGGTCATCCATCTCTCATCCCATTCATTATTTTCCCC--AAAACTATAAAGTAGCATACAGGA--AAAC--AAAAGTCAGTCTCACTACCAAAACACAC-TTTAA--CATCTCCTTAATTT-TTTATAAGTAGATTAAAATTCTGACCAGCATATCTACAAATTATTTCCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106678490 297 - 115148730 CTCACATTTTTGTCCCCAGAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAGGCAGAACCT---------GTTCC--------TCTGCCTTACAAAGAACCACAAGGACAAGAAATTAAGAATACTGCTGGTCATCCATCTCTCATCC-ATTCATTTTTTCCCCC--AAAACTATAAAGTAGCATACAGGA--AAAC--AAAAGTCAGTCTCACTACCAAAACACAC-TTTAA--CATCTCCTTAATTT-TTTATATGTAGATTAAAATTCTGACCAGCATATTTACAAATTATTTCCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86983356 303 +  95678458 ATCACGTTTTTGTCCCCAGAGACATACACTGAAACTTATGAACAACAAAGCCTCATACAGATGCCCTCTATAATAAAGGCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATCC-ATTCATATTGTTCCCC--AAAACTATAAAGTAGCATACAGGA--AAAC----AAGTCAGTCTCACTATCAAAACACACTTTTAA--CAACTCCTTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTCCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87638006 303 -  96509753 ATCACGTTTTTGTCCCCAGAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAGGCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATCC-ATTCATATTGTTCCCC--AAAACTATAAAGTAGCATACAGGA--AAAC----AAGTCAGTCTCACTATCAAAACACACTTTTAA--CAACTCCTTAATTT-TTTACACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTCCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82466337 303 +  90941950 CTCACGTTTTTGTCCCCAGAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAGAGCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATGTTGACGGTCATCCATCTCTCATCC-ATTCATATTGTTCCCC--AAAACTATAAAGCAGCATACAGGA--AAAC----AAGTCAGTCTCACTATCAAAACACACTTTTAA--CAACTCCTTAATTT-TTTATACGTAGATTAAGATTCTGACCAGCATATTCACAAATTATTTCCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24727259 301 +  33263144 CTCACGTTTTTGTCCCCAAAGACATACACTGAAACTCATGAACAACAAAGCCTCATACAGATGCCCTCTATAATGAAGGCAGAACCT---------GTTCCTGGCATATTGTGCCTTACAAAGAA-CACAAGGGCAAGAAATTAAGAATATTGACGGTCATCCATCTCTCATCC-ATTCATTTTGTTCCCC--AAAACTATAAAGTAACATACAGGA--AAAC----AAGTCAGTCTCACTACCAAA--ACACTTTTAA--CAACTCCTTAATTT-TTTATACGTAGATTAAAATTCTGACCAGCATATTCACAAATTATTTCCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1973547 309 -   2117846 TTCATATTTTTGTCACAAGAGCCATACACTAAAACTCATGAACAACAAAACCTCATACAGATGCCCTCTATAATGAAGGCAGAACCT---------GTTCCTGGCATACTGTGCCTTACAAAGAACCACAAGAACAAGAAATTAAGAATACTGTTGGTCATCCATCTCTCATCC-ATTCATTTTTTTCCCCCAAAAACTATAAGGTTGCATAGAGAAATAAAT--AAAAGTCAATCTCACTACCAAAACATGC-TTTAA--CATCTCCTTAATTT-TTTATACATACATTAAAATTCTGACCAGCATTTTCACAAATTATATCCA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46119187 305 -  69331447 CTCATATTTGTGGCTCAAGAGGCACCCACTGAGACACATGCACAA-----CCTTGCACAGATGCCCTC--TAATGAGAGCAGAGCCCGTGGCAATGGTTCCCAGCAAGCTGTGCCCCACAAAGAACTACTGGGGTAAGCAATTAAGA------CTGGTCATCCATCTCTCGCCC--TTTAATGTTTTCCCA--GAAACGATAAAGCAGTGAATGGAA--AAAGCTGTCACCCAGTCTCATTACCAAAACACAT-TTTCACTCCTCTCTTTAATTTCTTTATGCAAAGATTAAAATTCTAACCAGTATTTTCATGACTGATTTTCA
i canFam3.chr10             I 1127 C 0
e mm10.chr15                 82837864 1925 + 104043685 I

a score=841177.000000
s hg38.chr22_GL383582v2_alt    105681 314 +    162811 ATATTACATAC-tttttttttttttttttgagatggagtttcgctcttgtcaccc-aggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagc-gattctcccgcctcagcctccccagcagttgggattacaggtg---cccaccaccatgcccagctaacttctgtatttttagtagagatggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggt-ccgcctgcctcggcctcccacagtgccaggattacaggtgtgagccaccatgcccagcTCAAT
s panTro4.chr22              40930755 311 +  49737984 ATATTACATAC-tttttttttttttt---gagatggagtttcgctcttgtcaccc-aggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagc-gattctcctgcctcagcctccccagcagttgggattacaggtg---cccaccaccatgcccagctaacttctgtatttttagtagagatggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggt-ccgcctgcctcggcctcccacagtgccaggattacaggtgtgagccaccacgcccagcTCAAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37471047 312 +  46535552 ATATTACATAC-tttttttttttttt---gagatagagtttcgctcttgtcaccc-aggctggagtgcaatggcgcgatctcagctcactgcaacctccacctcccggttcaagt-gattctcctgcctcagcctccccagtagttgggattacaggtg---cccgccaccatgcccagctaactcttgtattttcagtagagacggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggtcccgcctgccttggcctcccaaagtgccaggattacaggtgtgagccaccgcgcccagccCGAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106678787 310 - 115148730 ATATTACGTAt-tttttttttttt-----gagatggagtttcgctcttgtcacccaaggctggaatgcaatggcgcaatctcagctcactgcaacctccacctcccggttcaaat-gattctcctgcctcagcctccccagtagttgggattacaggtg---cctgccaccatgcccagctaacttttgtatttttagtagaggcggggttt-ccccacgttggccaggctagtctcaaactcctgacctcaggtggt-ccgcgtgcctcagcctccctaagtgccaggattacaggtgtgagccaccgcgcccagccCAAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86983659 302 +  95678458 ATATTATGTAC-tttttttttttt-----gagatggaatttcgctcttgtcaccc-aggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttgggattacaggtg---cctgtcaccatgcccagctaacttttgtatttttagtagagatggagttt-ccccacattggtcgggctagtctcaaactcctgacct---------cagcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagccCAAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87638309 302 -  96509753 ATATTATGTAC-tttttttttttt-----gagatggaatttcgctcttgtcaccc-aggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagcctcctgagtagttgggattacaggtg---cctgtcaccatgcccagctaatttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacct---------cagcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagccCAAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82466640 302 +  90941950 atattatgtacttttttttttttt-----gagatggaatttcgctcttgtcaccc-aggctggagtgcaatggcacaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagccttctgagtagttgggattacaggtg---cctgtcaccatgtccagcttacttttgtattttt-gcagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacct---------cagcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagcccaat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24727560 301 +  33263144 ATATTACGTAC--tttttttttct-----gagatggaatttcactcttgtcaccc-aggctggagtgcaatggcgcaatctcagctcactgcaacctccaccttccagttcaagtggattctcctgcctcagccacccgagtagttgggattacaggtg---cctatcaccatgcccagctaacttttgtatttttagtagagatggagttt-ccccacattggtcaggctagtctcaaactcctgacct---------cagcctgcctctgcctcccaaagtgctgggattacaggtaggagccaccgcgcccagccCAAT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1973856 309 -   2117846 ATTTTACATAt-ttttatttt--------gagacggagtttcgctcttgtcactc--ggctggagtgcaatgaccagatctcagctgactgcaacctttgcctccttgttcaagc-gattctcctgcctcagcctaccgagtagctgggattacaggtgcccccccccaccacatccagctaatttttgtatttttagtagggacgaggtttcccccatgttgaccaggctggtttctaactcctgacctcaggtggt-ccacgtgcctcagcctcccaaagtgctgggattacacgtgtgagccaccacacccggccCCGT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82837864 1925 + 104043685 I
e canFam3.chr10              46119492   0 -  69331447 C

a score=558285.000000
s hg38.chr22_GL383582v2_alt    105995 166 +    162811 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTT-CTACGTGTCTCTT----AA-AGAACCTGT---CAGTCACAAATTTACC-----CTGCACTGATCACCCCCCATGCCAGGCATTAGGGTGGGCTC---TGGGGCCAAC
s panTro4.chr22              40931066 166 +  49737984 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTT-CTATGTGTCTCTT----AA-AGAACCTGT---CAGTCACAAATTTACC-----CTGCACTGATCACCCCCCATGCCAGGCATTAGGGTGGGCTC---TGGGGCCAAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37471359 165 +  46535552 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTT-CTATGTGTCTCTT----AA-AGAACCTGT---CAGTCACAAATTTACC-----CTGCACTGATCA-CCCCCATGCCAGGCATTAGGGTGGGCTC---TGGGGCCAAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106679097 165 - 115148730 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTT-CTATGTGTCTCTT----AA-AGAACCTGT---CAGTCACAAATTTACC-----CTGCACTGATCA-CCCCCATGCCAGGCATTAGGGTGGGCTC---TGGGGCCAAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86983961 165 +  95678458 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTC-CTATGTGTCTCTT----AA-ATAACCTAT---CAGTCACAAATTTACG-----CTGTACTGATCA-CCCCCATGCCAGGCACTAGGGTGGGCTC---TGGGGCCAAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87638611 165 -  96509753 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTC-CTATGTGTCTCTT----AA-ATAACCTAT---AAGTCACAAATTTACG-----CTGTACTGATCA-CCCCCATGCCAGGCACTAGGGTGGGCTC---TGGGGCCAAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82466942 165 +  90941950 attacatacttttaaacatacata-tttaaatggCATCCAAAGGCCCACCTCTTCCCACTGGAGGTTACATTGCTC-CTATGTGTCTCTT----AA-ATAACCTAT---CAGTCACAAATTTACG-----CTGTACTGATCA-CCCCCATGCCAGGCACTAGGGTGGGCTC---TGGGGCCAAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24727861 165 +  33263144 ATTACATACTTTTAAACATACATA-TTTAAATGGCATCCAAAGGCCCACCTCTTCCCACTGGAGATTACATTGCTC-CTATGTCTCTCTT----AA-ATAACCTAT---CAGTCACAAATTTATC-----CTGTACTGATCA-CCCCCATGCCAGGCACTAGGGTGGGCTC---TGGGGCCAAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1974165 173 -   2117846 ATTACATACTCTTAAACATACATACTTTAAATGGCATCCAAAGGCTCACTTCCTTCCACTAAACATTACATTGCTC-CCATGTGTCTCTTTAAGAA-AGAACCCAGCCACAGTCACAAATTTACC-----CTGTACTGATCA-TCCTCATGCCAGGCACTAGGGTGAGCTC---TGGGGTCAAC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46119492 173 -  69331447 ATTATATGTTTTAAAACAAGTAC--TTTAAGTGGTATCCAAAGGCCCGCCTCCTACCACTAAACATC-TGTTGCTCATTACATGCCTCTT----AAGAGAGACTAC---TAGTCACAGGTTTACCCCACACTGCACAGATCA-GCCAGGTGTCAAGCACTACGGTGGGCTCGGTTGGGGAAAAC
i canFam3.chr10             C 0 I 13
e mm10.chr15                 82837864 1925 + 104043685 I

a score=734069.000000
s hg38.chr22_GL383582v2_alt    106161 246 +    162811 TCAGCCCTTGGGGAGCCTATCTGGTGAGGACGACAATCAGATAAGCTGGTAGTCACCCCAAGAGCAGCTCCAGCTTAGCTGGGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGGGTCTGTGTAACCTGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAGGTCTGTCCTACCCTCAGTGAGGAGGCACTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG
s panTro4.chr22              40931232 246 +  49737984 TCAGCCCTTGGGGAGCCTATCTGGTGAGGACGACAATCAGATAAGCTGGTAGTCACCCCAAGAGCAGCTCCAGCTTAGCTGGGCATTTGCATAAGTGCTGGGAGGTATAGGCTCTGAATACTGTTGGGTCTGTGTAACCTGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAGGTCTGTCCTACCCTCAGTGAGGAGGCACTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37471524 245 +  46535552 TCAGCCCTTGGGGAGCCTATCTGGTGAGGACGACAATCAGATAAGCTGGTAGTCACCCCAAGAGCAGCTCCAGTTTAGCTGAGCATTTGCATAAGTGCCGGGAGGCATAGGTTCTGAATGCTGTTGGGTCTGTGTAACCTGCAAAGGGAAGGCTGTGTCAGTAAGGTCTCAGAGGTCTGGCCTACCCTCA-TGAGGAGGCACTTAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106679262 246 - 115148730 TCAGCCCTTGGGGAGCCTATCTGGTGAGGACGACAATCAGATAAGCTGGTAGTCACCCCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCATAATTGCTGGGAGACATAGGCTCTGAATACTGTTGGGTCTGTGTAACCTGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAGGTCTGTCCTATCCTCAGTGAGGAGGCATTCAGACCTGCCACTATTGGAGTGACTTGGGGGATTTGACCCATG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86984126 246 +  95678458 TTAACTCTTGGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAGCTGGTAGTCACACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCGTAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCTGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87638776 246 -  96509753 TTAACTCTTGGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAGCTGGTAGTCACACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCGTAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAATCTGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82467107 246 +  90941950 TTAACTCTTGGGGAACCTATCTGGTGAAGAAGACAATCAAGTAAGCTGGTAGTCACACCAAGAGCAGCTCCAGCTTAGCTGAGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCTGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24728026 246 +  33263144 TTAGCTCTTGGGGAACCTATCTGGTGAAGAAGACAATCAGGTAAGCTGGTAGTCACACCAAGAGCAACTCCAGCCTAGCTGAGCATTTGCATAAGTGCTGGGAGGCATAGGCTCTGAATACTGTTGAGTCTGTGTAACCTGTAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAAGTCTGTCCTACCCTCAGTGAGGAGGCACTCGGACCTGCCACTATTGGAGTGACTTGGGGGATCTGACCCATG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1974338 226 -   2117846 TCAGCCCTTGGGGAGCCTATCCAGTGA-GAAGACAATCAGGTAAGCTGGTAGTCACACCAAGAACAGTTCCATCTTAGCTGAGCACGTGC----------------ATAGTCTCTGGATACCGTTGGGTCTGTGTAACCAGCAAAGGGAAGGCTGAGTCAGTAAGGTCTCAGAGCCCTGCCCTGCCCT---TGAGGTGGCACTTGGACCTGCCACTACTGGAATGACTTGGAGGATCTGACCCACG
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82837864 1925 + 104043685 I
e canFam3.chr10              46119665  13 -  69331447 I

a score=414379.000000
s hg38.chr22_GL383582v2_alt    106407 133 +    162811 GGTGCTAAGTGGTGTAATAGGTAAAATGGGAGTGCAGCTGGGCAGCACTTGCTGCCTGGGGA----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCGATGTGCTTTTCACAAATAATAGTGGATTAAAATGCC--CAGG
s panTro4.chr22              40931478 133 +  49737984 GGTGCTAAGTGGTGTAACAGGTAAAATGGGAGTGCAGCCGGGCAGCACTTGCTGCCTGGGGA----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCGATGTGCTTTTCACAAATAATAGTGGATTAAAATGCC--CAGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37471769 133 +  46535552 GGTGCTAAGTGGTGTAACAGGTAAAATGGGAGTGCAGCTGGGCAGCACTTGCTGCCTGGGGA----------ATGAGGTGACAGGTGagctg--gttttaaatccatctgcttttcacaaataatagtggattaaaatgcc--cagg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106679508 130 - 115148730 GGTGCTAAGAGGTGTAACAGGTAAAATGGGAGTGCAGCTGGGCAGCACTTGCTGCCTAGGGA----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCCATGTGCTTTTCACA---AATAGTGGATTAAAATGCC--CAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86984372 132 +  95678458 GGTGCTAAGTGGTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGCCTGGGGG----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCCACGTGCTTTTCACA---AATAGTAGATTAAAATGCTCACAGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87639022 132 -  96509753 GGTGCTAAGTGGTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGCCTGGGGG----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCCACGTGCTTTTCACA---AATAGTAGATTAAAATGCTCACAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82467353 132 +  90941950 GGTGCTAAGTGGTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGCCTGGGGG----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCCACGTGCTTTTCACA---AATAGTAGATTAAAATGCTCACAGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24728272 130 +  33263144 GGTGCTAAGTGGTGTAACAGGTAAAATGGGAGTGCTGCTGGGCAGCACTTGCTGCCTGGGGG----------ATGAGGTGACAGGTGAGCTG--GTTTTAAATCCAAGTGCTTTTCACA---AATAGTAGACTAAAATGCT--CAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1974564 143 -   2117846 GGTGCTAAGTAGCTTAACACATAAAATCGGAATGCCTCTGGGCAGCATTTGCTTGGCGGGGGTAGGGGGGAAATGAGGTAACAGGTGAGCTG--GTTTTAAATCAATGAGCTTCTCACAAACAACAGTGGATTAAAATGCC--TAGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46119678 110 -  69331447 GGTGCTAAGTGGCACAACAGGCATAATGGGAGTGCTG------GGGACTTGCTGCCTGGGAA----------ACCGGGTGACAGGTGAGCTATCTTTTTAAAT----GTGCTTTTCATG---AATA------------GCT--CAGG
i canFam3.chr10             I 13 C 0
e mm10.chr15                 82837864 1925 + 104043685 I

a score=2204762.000000
s hg38.chr22_GL383582v2_alt    106540 656 +    162811  
s panTro4.chr22              40931611 654 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37471902 640 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106679638 654 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86984504 651 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87639154 652 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82467485 650 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24728402 656 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1974707 639 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82839789 560 + 104043685  
i mm10.chr15                I 1925 I 84
s canFam3.chr10              46119788 603 -  69331447  
i canFam3.chr10             C 0 C 0

a score=604455.000000
s hg38.chr22_GL383582v2_alt    107196 195 +    162811 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGCATCAGATAGGGCTGAA-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGGGTTATCTTT----ACTAAACCAACACATGAGGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATAATATTTGCTTCCTTTAAAA
s panTro4.chr22              40932265 195 +  49737984 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGCATCAGATAGGGCTGAA-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGCGTTATCTTT----ACTAAACCAACACATGAGGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATAATATTTGCTTCCTTTAAAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37472542 196 +  46535552 TAAGCGCATACAACCAAAATCACTCCACTATTACCAGGGTTTATGTGGACAGCATCAGATAGGGCTGAA-TTTTGTCTTCAGTTTAATTTCCA-CCAGTAAGTTTACAGACAGGAGCATTATCTTT----ACTAAACCAACATATGAGGACACAA--TTCTAAGGCTGATGCTAGGTAGCTCATAATATTTGCTTCCTTTAAAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106680292 186 - 115148730 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGCATCAG----------T-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGAGAGGAGCGTTATCTTTACTAACTAAACCAACACATGAGGACACAA--TTCTAAGGCTGATGCTAGGTAGCTC---ATATTTGCTTCCTTTAAAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985155 191 +  95678458 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGCATCAGATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAGTAAGTTTAGAGACAGGAGTG-TATCTTT----ACGAAACCAACACATGAGGACACAA--TTCTAAGGCTGATGC----TAGCTCATAATATTTGCTTCCTTTAAAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87639806 191 -  96509753 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGCATCAGATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAGTAAGTTTAGAGACAGGAGTG-TATCTTT----ACGAAACCAACACATGAGGACACAA--TTCTAAGGCTGATGC----TAGCTCATAATATTTGCTTCCTTTAAAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82468135 191 +  90941950 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGCATCAGATAGGGCTgaatttttctcttcagtttaaTTTCCA-CCAATAAGTTTAGAGACAGGAGTG-TATCTTT----ACGACACTAACACTGGAGGACACAA--TTCTAAGGCTGATGC----TAGCTCATAATATTTGCTtcctttaaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24729058 189 +  33263144 TAAGTGCATACAACCAAAATCACTCCACTATTACCA-GGTTTACGTGGACAGTATCAGATAGGGCTGAATTTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTAGAGACAGGAGTG-TATCTTT----ACTAAACCAACACATGAGGACACAA--TTCTAAGGCTGATGC----TAGCTCATAATATTTGCTTCCTTTAA--
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1975346 185 -   2117846 TAAGTGCATACAACC-AAATCACTGCACTATTAGCA-GGTTTACCTGGACAGCATCAGATAGGGCTGAC-TTTTCTCTTCAGTTTAATTTCCA-CCAATAAGTTTACAGACAGGAGCA-TATGTTT----ACTAAACCAACACAT---GACACAATTTTCTAAGGCTGATGC----TAGCCC---ATATTTGCTTCCTTTAAAA
i calJac3.chrUn_GL286373    C 0 I 310
s canFam3.chr10              46120391 189 -  69331447 TACACGCACACAGCCAAAACCACTCTACTG-TACCT-GGCTTACTGGGACAGGGTCATACAGGGCTGAG-TTTTCTCCTCCGCTTGATTTCTACCCAATGAGCTTAATGACAGGGACA-CATCTCC----ACTAAAATGACATGTGAGGACACC---TTCCAGGGCTGACAC----CAGCTCATAGTACTTACTTCCTTTAAAA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I

a score=379568.000000
s hg38.chr22_GL383582v2_alt    107391 113 +    162811 CCACATCAACTCAAAAGCTTCCAGGAATAGTTTAGCCTCCACCAAGGAGGCTACTTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTTACA
s panTro4.chr22              40932460 113 +  49737984 CCACATCAACTCAAAAGCTTCCAGGAATAGTTTAGCCTCCACCAAGGAGGCTACTTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTTACA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37472738 113 +  46535552 CCACATCAACTCAAAAGCTTCCAGGAATAGTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCCCTATCACCATCTAATTTACA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106680478 113 - 115148730 CCACATCAACTCAAAAGCTTCCAGGAATAGTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTGAGTTTTATCCTTTACAGTCCTCTATCATCATCTAATTTACA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985346 113 +  95678458 CAACAACAACTCAAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACCATCATTTAATTTACA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87639997 113 -  96509753 CAACAACAACTCAAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACCATCATTTAATTTACA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82468326 113 +  90941950 caacaacaactcaaAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTTATCCTTTACAGTCCTCTACCATCAtttaatttaca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24729247 112 +  33263144 -AACAACAACTCAAAAGCTTCCAAGAGTATTTTAGTATCCACCAAGGAGGCTACCTGATTTCGAGCAAAGTTAGTTTTATCCTTTACAGTCCTCCACCATCATTTAATTTACA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1975841 108 -   2117846 CCACATTAACTCAAAAGCTCACAGGAA-----TAATATCCACCAAGGAGGCTACCTGATTTCCAGCAAAGTTAGTTTCATCCTTCAGAGTCCTCTATTGTCATCTAATTTCTA
i calJac3.chrUn_GL286373    I 310 C 0
s canFam3.chr10              46120580 110 -  69331447 CCATCTCAGCTCAAAAGCCTCT--GAATAGTTTAGTGCCCACCAAGAAAGCTACCTAATCTCCAGCAAAGTTAATTTTA-CCCCAACAGTCCTCTGTCACCATCCTATTTATA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I

a score=55584.000000
s hg38.chr22_GL383582v2_alt    107504 127 +    162811 GATGAGAAACtttttttttttttttt----------ttgagatggagtctcgctgtgtcgcccaggctggagggcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctc
s panTro4.chr22              40932573 125 +  49737984 GATGAGAAACtttttttttttttttt------------gagacggagtctcactgtgtcgctcaggctggagggcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37472851 129 +  46535552 GATGAGAAACtttttttttttttttt--------ttttgagacggagtctcgctctgtcgcccaggctagagggcagtggtgcgatctcggctcactgcaagctccgcctccagggttcacgccattctcctgcctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106680591 137 - 115148730 GATGAGAAACttttttttttttttttttttttttttttgagacagagtcttgctctgtcacccaggccggagggcagtggtgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgcctc
i nomLeu3.chr7b             C 0 C 0
s canFam3.chr10              46120690  38 -  69331447 GATGGGAAAACTTTAT-------------------------------------------------------------------------------CTAAGAGCTC--------------------TCCTAATGCCTC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I
e calJac3.chrUn_GL286373      1975949   0 -   2117846 C
e chlSab2.chr19              24729359   0 +  33263144 C
e papAnu2.chr10              82468439   0 +  90941950 C
e macFas5.chr10              87640110   0 -  96509753 C
e rheMac3.chr10              86985459   0 +  95678458 C

a score=95124.000000
s hg38.chr22_GL383582v2_alt    107631 184 +    162811 agcctccagagtagctgggactacaggtgcccgccaccacgcccggcta-attttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgtctcggcctgccaaagtgctgggattacaggcgtgagccaccgtgcccggcTGG
s panTro4.chr22              40932698 184 +  49737984 agcctccggagtagctgggactacaggtgcccgccaccacgcccggcta-attttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccgcccgtctcggcctgccaaagtgctgggattacaggcatgagccaccgtgcccggcTGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37472980 185 +  46535552 agcctcccaagtagctgggactacaggcgcccgccaccacgcccggctattttttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgtctcggcctgccaaagtgctgggattacaggtgtgagccaccgtgcccggctGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106680728 185 - 115148730 agcctcccgagtagctgggactacagacgcctgccaccaagcccggctaatttttttgtatttttagtagagacagggtttcactgtgttagccaggatgttctcgatctcctgacctcacgatctgcctgtctcagcctgccaaagtgctgggattacaggcgtgagccaccgtacccggcTGG
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I
e canFam3.chr10              46120728   0 -  69331447 C
e calJac3.chrUn_GL286373      1975949   0 -   2117846 C
e chlSab2.chr19              24729359   0 +  33263144 C
e papAnu2.chr10              82468439   0 +  90941950 C
e macFas5.chr10              87640110   0 -  96509753 C
e rheMac3.chr10              86985459   0 +  95678458 C

a score=83552.000000
s hg38.chr22_GL383582v2_alt    107815 35 +    162811 GATGAGAAACTTTTTAAGAGCTCTACTAATGCCTA
s panTro4.chr22              40932882 35 +  49737984 GATGAGAAACTTTTTAAGAGCTCTACTAATGCCTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473165 35 +  46535552 GATGAGAAACTTTTTAAGAGCTCTACTAATGCCTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106680913 35 - 115148730 GATGAGAAACTTTTTAAGAGCTCTACTAATGCCTA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985459 28 +  95678458 GATGAGAAACTTTTTAAGAGCTCTA-------CGA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87640110 28 -  96509753 GATGAGAAACTTTTTAAGAGCTCTA-------CGA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82468439 28 +  90941950 gatgagaaacttttTAAGAGCTCTA-------CAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24729359 28 +  33263144 GATGAGAAACTTTTTAAGAGCTCTA-------CGA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1975949 35 -   2117846 GATAAGAAACTTTTTAAGAGCTCTACTAATGCCTA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82840349 84 + 104043685 I
e canFam3.chr10              46120728  0 -  69331447 C

a score=318328.000000
s hg38.chr22_GL383582v2_alt    107850 91 +    162811 ATTTAGGGGCACCCCTGAAGAAAGGAGTTCCATACATCTCAATTTTCCAGAGAAGTGATTCA---GGCTATGAGAAATAGGTACAGAAAAACAA---
s panTro4.chr22              40932917 91 +  49737984 ATTTAGGGGCACCCCTGAAGAAAGGAGTTCCATACATCTCAATTTTCCAGAGAAGTGATTCA---GGCTATGAGAAATAGGTACAGAAAAACAA---
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473200 91 +  46535552 ATTTAGGGGCACCCCTGAAGAAAGGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATTCA---GGCTATGAGAAATAGGTACAGAAAAACAA---
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106680948 91 - 115148730 ATTTAGGGGCACCCCTGAAGAAAGGAGTTTCATACATCTGAATTTTCCAGAGAAGTGATTCA---GGCTATGAGAAATAGGTACAGAAAAACAA---
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985487 91 +  95678458 ATTTAGGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATTCA---GGCTATGGGAAATAGGTACAGAAAAACAA---
i rheMac3.chr10             C 0 I 325
s macFas5.chr10              87640138 91 -  96509753 ATTTAGGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATTCA---GGCTATGAGAAATAGGTACAGAAAAACAA---
i macFas5.chr10             C 0 I 3
s papAnu2.chr10              82468467 91 +  90941950 ATTTAGGGGCAACCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATTCA---GGCTATGGGAAATAggtacagaaaaacaa---
i papAnu2.chr10             C 0 I 3
s chlSab2.chr19              24729387 91 +  33263144 ATTTAGGGGCACCCCTGAAGAAAAGAGTTCCATACATCTGAATTTTCCAGAGAAGTGATTCA---GGCTATGGGAAATAGGTACAGAAAAACAA---
i chlSab2.chr19             C 0 I 318
s calJac3.chrUn_GL286373      1975984 91 -   2117846 ATTTAGGGGCACCCCTAAAGAAAGGAGTTCCATACATCTGAATTTTCCAGAAAAGTGATTCT---GGCTAGGAAAAATATGTACATAACAACAA---
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46120728 97 -  69331447 ATTTAGGTGTACTCCTAAAGAAAGGGTTTCCTTACATCCACATTTTCCAGATAACAGAGTTATTGGATTAGGGAAATTATGCACAGAAAAATGACGA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349 84 + 104043685 I

a score=15792.000000
s hg38.chr22_GL383582v2_alt    107941 6 +    162811 ATTGAG
s panTro4.chr22              40933008 6 +  49737984 ATTGAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473291 6 +  46535552 ATTGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681039 6 - 115148730 ATTGAG
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87640232 6 -  96509753 ATTGAG
i macFas5.chr10             I 3 I 308
s papAnu2.chr10              82468561 6 +  90941950 attgag
i papAnu2.chr10             I 3 I 4
s calJac3.chrUn_GL286373      1976075 6 -   2117846 ATTGAG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46120825 6 -  69331447 ATTGAG
i canFam3.chr10             C 0 I 4
e mm10.chr15                 82840349 84 + 104043685 I
e chlSab2.chr19              24729478 318 +  33263144 I
e rheMac3.chr10              86985578 325 +  95678458 I

a score=1882.000000
s hg38.chr22_GL383582v2_alt    107947 6 +    162811 AATAAT
s panTro4.chr22              40933014 6 +  49737984 AATAAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473297 6 +  46535552 AATAAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681045 6 - 115148730 AATAAC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87640546 5 -  96509753 aaaaa-
i macFas5.chr10             I 308 C 0
s papAnu2.chr10              82468571 6 +  90941950 aataat
i papAnu2.chr10             I 4 C 0
s calJac3.chrUn_GL286373      1976081 3 -   2117846 AAT---
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46120835 6 -  69331447 AGCATT
i canFam3.chr10             I 4 C 0
e mm10.chr15                 82840349 84 + 104043685 I
e chlSab2.chr19              24729478 318 +  33263144 I
e rheMac3.chr10              86985578 325 +  95678458 I

a score=26865.000000
s hg38.chr22_GL383582v2_alt    107953 9 +    162811 AAAATTCCA
s panTro4.chr22              40933020 9 +  49737984 AAAATTCCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473303 9 +  46535552 AAAATTCCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681051 9 - 115148730 AGAATTCCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985903 9 +  95678458 aaaaaTCCA
i rheMac3.chr10             I 325 C 0
s macFas5.chr10              87640551 9 -  96509753 aaaaaaCCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82468577 9 +  90941950 aaaattcca
i papAnu2.chr10             C 0 I 323
s chlSab2.chr19              24729796 9 +  33263144 aaaaaTCCA
i chlSab2.chr19             I 318 C 0
s calJac3.chrUn_GL286373      1976084 9 -   2117846 AAAATGCCA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46120841 9 -  69331447 ACAATTCCA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349 84 + 104043685 I

a score=37754.000000
s hg38.chr22_GL383582v2_alt    107962 14 +    162811 AATTAACAATTAAT
s panTro4.chr22              40933029 14 +  49737984 AATTAACAATTAAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473312 14 +  46535552 AATTAACAATTAAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681060 14 - 115148730 AATTAACAATTAAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985912 14 +  95678458 AAGTAACAATTAAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87640560 14 -  96509753 AAGTAACAATTAAT
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24729805 14 +  33263144 AAGTAACAATTAAT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1976093 14 -   2117846 AATTAATAACTAAT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46120850 14 -  69331447 AATTAATGATCAAT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349 84 + 104043685 I
e papAnu2.chr10              82468586 323 +  90941950 I

a score=257746.000000
s hg38.chr22_GL383582v2_alt    107976 85 +    162811 GGACATTAAACA-CAAAATTAACAGGGAACAACATTAATATCACTAATAAAATAAATGAA----AAGGAACTAAAAGTTTAAAAAGAAGG
s panTro4.chr22              40933043 85 +  49737984 GGACATTAAACA-CAAAATTAACAGGGAACAACATTAATATCACTAATAAAATAAATGAA----AAGGAACTaaaagtttaaaaagaagg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473326 85 +  46535552 GGACATTAAACA-CAAAATTAACAGGGAACAACATTAATATCACTAATAACAGAAATGAA----AAGGAACTAAAAATTTAAAAAGAAGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681074 85 - 115148730 GGACATTAAACA-CAAAATTAACAGGGAACAACATTAATATCACTAATAAAAGAAATGAA----AAGGAACTAAAGGTTTAAAAAGAAGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86985926 80 +  95678458 AGACATTAAACA-CAAAATTAACATGGAACAACATTAATATCACTAAT-----AAATGAA----AAGGAACTaaaagtttaaaaagaagg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87640574 80 -  96509753 AGACATTAAACA-CAAAATTAACATGGAACAACATTAATATCACTAAT-----AAATGAA----AAGGAACTAAAAGTTTAAAAAGAAGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82468909 80 +  90941950 AGAcattaaaca-caaaattaacatGGAACAACATTAATATCactaat-----aaatgaa----aaggaactaaaagtttaaaaagaagg
i papAnu2.chr10             I 323 C 0
s chlSab2.chr19              24729819 80 +  33263144 GGACATTAAACA-CAAAATTAACATGGAACAACATTAATATCACTAAT-----AAACGAA----AAGGAACTAAAAGTTTAAAAAGAAGG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1976107 72 -   2117846 GGACATTAAACA-CAAAATTAACAGGG---AACATTAATATTGCTAAT----------AA----AATGAACTAAAAGTTTAAAAAGAAGG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46120864 87 -  69331447 AGGCATAAAGCATTAAAATTAACAGGG---AACAGTGATATCACTGATGCAAGAAGTAAAATTTAAAGGattaaaaatttagaaattggg
i canFam3.chr10             C 0 I 189
e mm10.chr15                 82840349 84 + 104043685 I

a score=685089.000000
s hg38.chr22_GL383582v2_alt    108061 212 +    162811 TCCAA-TGCCACTGAGGTAGCAGTAAACA--GGCTC-ACCTGTCCTCATGGATGCTCATGCCTTGTTATGACCCTTTGTTGATTAAACCACAAGACAATGCCTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAACAGCCATAAA-TTTTTCTTTAAATCGAA------A---AATAAAAATGCTTATTGCTCCA-TAGAAAGTAGTAAATTA
s panTro4.chr22              40933128 212 +  49737984 tccaa-tgccactgaggtagcagtaaaca--ggctc-acctgtcctcatggatgctcacgccttgttatgaccctttgttggttaaaccacaagacaatgcctatcaaaaaccataacaatgttggcccttcttgacctagcagttcaacagccataaa-tttttctttaaatcgaa------a---aataaaaatgctTATTGCTCCA-TAGAAAGTAGTAAATTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473411 215 +  46535552 TCCAA-TGCCACTGAGGTAGCAGTAAACATGGGCTCAACCTGTCCTCATGGATGCTCATGCCTTGTTATGACCCTTTGCTGGTTAAACCACAAGACAATGCCTATCAAAAACCATCACAATGTTGGCCTTTCTTGACCTAGCAGTTCAATAGCTGTAAA-TTTTTCTTTAAATCGAA------A---AATAAAAATGCTTATTGCTCCA-TAGAAGGTAGTAAATTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681159 214 - 115148730 TCCAA-TGCCACTGAGGTAGCAGTAAACATGGGCTC-ACCTGTCCTCATGGATGCTCATACCTTGTTATGACCCTTTGCTGGTTAAATCACAAGACAATGTCTATCAAAAACCATAACAATGTTGGCCCTTCTTGACCTAGCAGTTCAATAGCCATAAG-TTTTTCTTTAAATCAAA------A---AATAAAAATGCTTATTGCTCCA-TAGAAAGTATTAAATTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86986006 215 +  95678458 tccaa-tgtcactgaggtggcagtaaacaagggctc-acctgtcctcatggatgctcatgccttggtatgaccctttgttggttaaaccacaagacaatgcctatcaaaaaccgtaacaatgttggccctttttgacctagcagttcaatagctataaattttttctataaatcgaa------a---aataaaaatgctTATTGCTCCA-TACAAAGTAGTAAATTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87640654 215 -  96509753 TCCAA-TGTCACTGAGGTGGCAGTAAACAAGGGCTC-ACCTGTCCTCATGGATGCTCATGCCTTGGTATGACCCTTTGTTGGTTAAACCACAAGACAATGCCTATCAAAAACCGTAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATAAATTTTTTCTATAAATCGAA------A---AATAAAAATGCTTATTGCTCCA-TACAAAGTAGTAAATTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82468989 215 +  90941950 tCCAA-TGTCACTGAGGTGGCAGTAAACAAGGGCTC-ACCTGTCCTCATGGATGCTCATGCCTTGGTATGACCCTTTGTTGGTTAAACCACAAGACAATGCCTATCAAAAACCGTAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATAAATTTTTTCTATAAAtcgaa------a---aataaaaatgcttattgCTCCA-TACAAAGTAGTAAATTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24729899 215 +  33263144 TCCAA-TGTCACTGAGGTGGCAGTAAACAGGGGCTC-ACCTGTCCTCATGGATGCTCATGCCTCGGTATGACCCTTTGTTGGTTAAACCACAAGACAATGCCTATCAAAAACCGTAACAATGTTGGCCCTTTTTGACCTAGCAGTTCAATAGCTATAAATTTTTTCTATAAATGAAA------A---CATAAAAATGCTTATTGCTCCA-TACAAAGTAGTAAATTA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1976179 212 -   2117846 TCCAG-CGCCACTGAGGTAGTAGTAAATGCAGGCTC-ACCTGTCCTCATGGATGCTCATGCCTTTGTATGGCCCTTTGCTGGTTAAACCATAAGACAATGCCTATCAAAAACCATAACAAAGTTGGCCCCTTTTGACCTAGCAGTTCAATAGCT------ATTTTCTTTAAATAGAA------AAATAATAAAGATGTTTATTGTTCCA-TAGAAAGCAATAAATTA
i calJac3.chrUn_GL286373    C 0 I 301
s canFam3.chr10              46121140 213 -  69331447 TCCAAGTGTTGCTGAGGTTATAGTG------GGCTC-CCATGTATCTGTGAATGATCATAGCTCAGTATGATCCTTT-TTGGTTAAACCACAAGATAATGCTTATCAAAACCCATAA-AATATTCATGTTTTTTGACTT-GCAGTTTAACATCTGGAGA-TTTTCCCTCAACTAAAACTCCATG---AATAGGAACGTTGACTGCTGCATTAAAAAACAGTGAATTA
i canFam3.chr10             I 189 C 0
e mm10.chr15                 82840349  84 + 104043685 I

a score=17352.000000
s hg38.chr22_GL383582v2_alt    108273 5 +    162811 ACTGG
s panTro4.chr22              40933340 5 +  49737984 ACTGG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473626 5 +  46535552 ACTGG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681373 5 - 115148730 ACTGG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86986221 5 +  95678458 ACTGG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87640869 5 -  96509753 ACTGG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82469204 5 +  90941950 ACTGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24730114 5 +  33263144 ACTGG
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46121353 5 -  69331447 ACTGG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349 84 + 104043685 I
e calJac3.chrUn_GL286373      1976391 301 -   2117846 I

a score=927712.000000
s hg38.chr22_GL383582v2_alt    108278 309 +    162811 AAACCACCTCAA-----TAAAAGTGC-------GGTACTTGAATAAATTACATTATACTCACGCTAAACTAAG-------------------AAAAAAGaaatcacagattagaatgaaaattaaaattacaaaataaagtaaaaaAAGCAACACAGACTTGTATCTACACTGTGATGATGGAGactcacaaggtttgaatcctgggcaagctcctctctggacctcaaa---tctcacctg-gagtgtgatgagacccaccagaaagggttggtttgaggtctaaatgtgg-taattcacgtatagtgcttagaaagcattcag------------------------------------------------------------------------------tacatgttagcagtcattac
s panTro4.chr22              40933345 309 +  49737984 AAACCACCTCAA-----TAAAAGTGC-------GGTACTTGAATAAATTACATTATACTCATGCTAAACTAAG-------------------AAAAAAGAAATCACAGATTAGAATGAAAATTAAAATTACAAAACGAAGTAAAAAAAGCAACACAGACTTGTATCTACACTGTGATGATGGAGactcacaaggtttgaatcctgggcaagctcctctctggacctcaaa---tctcacctg-cagtgtgatgagacccaccagaaagggttggtttgaggtctaaatgtgg-taattcacgtatagtgcttagaaagcattcag------------------------------------------------------------------------------tacatgttagcagtcattac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473631 308 +  46535552 AAACCACCTCAA-----TAAAAGTGC-------GGTACTTGGATAAATTACATTATACTCACACTAAACTAAG-------------------ACAAAA-AAATCACAGATCAGAATGAAAATTAAAATTACAAAATAAAGTAAAAGAAGCAACACAGACTTGTATCTACACTGTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctggacctcaaa---tctcatccg-gagtgtgatgagacccaccagaaagggttggtttgaggtctaaatgtga-taattcatgtatagtgcttagaaagcattcag------------------------------------------------------------------------------taaatgttAGCAGTCATTAc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681378 309 - 115148730 AAACCACCCCAA-----CAAAAGTGC-------AGTACTTGGATAAATCACATTATACTCACACTAAACTAAG-------------------ACAAAa-aaatcacagattagaatgaaaattaaaattacaaaataaagtaaaaaAAGCAACACAGACTTGTATCTATACTGTGATGATGGAGactcacaaggtttgaatcctgggcaaggtcctctctggacctcaaa---tctcacctg-gaatgtgatgagagccaccaggaagggttggtttgaggtctaaatgtgattaattcacgtatagtgcttagaaagcattcag------------------------------------------------------------------------------tacatgttagcagtcattac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86986226 385 +  95678458 AAACCACCTCCA-----TAAGAGTGC-------GATACTTGGATAAATCACATCATACTAACATTAAATTAGG-------------------ACAAAA-AAACC-CAGATTAGTATGAAAATTAAAATTACAAAATAAAGTTAAAAAAGCAACACAGACTTGTATCTACACTGTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gagtgtgatgagacccatcagaaagggttggtttgaggtctacatgtga-taattcacgtatagtgcttagaaagcattcagtacatgttagcagtcattaTagccgttcctggtatccatggaggactggttccaggacctctgccaataccaaTCATTTACATGTTAGCAGTCATTAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87640874 307 -  96509753 AAACCACCTCCA-----TAAGAGTGC-------GATACTTGGATAAATCACATCATACTAACATTAAATTGGG-------------------ACAAAA-AAACC-CAGattagtatgaaaattaaaattacaaaataaagttaaaaAAGCAACACAGACTTGTATCTACACTGTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gagtgtgatgagacccatcagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcttagaaagcattcag------------------------------------------------------------------------------tacatgttagcagtcattaT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82469209 306 +  90941950 AAACCACCTCCA-----TAAGAGTGC-------GACACTTGGATAAATCACATCATACTAACAttaaattagg-------------------accaaa-aaaac-caggttagtatgaaaattaaaattacaaaatagagttaaaaaaGCAACACAGACTTGTATCTACACTGTGATGATGGAGACTCACAAGGTTTGAATCCTGGGCAAGTTCCTCTCTAGACCTCAAA---TCTCACCTG-GAGTG-GATGAGACCCATCAGAAAGGGTTGGTTTGAGGTCTAAATGTGA-TAATTCACGTATAGTGCTTAGAAAGCATTCAG------------------------------------------------------------------------------TACATGTTAGCAGTCATTAT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24730119 319 +  33263144 AAACCACCTCCAGTGCGTAAGAGTGC-------GATACTTGGATAAATCACATCATACTAACACTAAATTAAG------------AACAAAAAAAAAA-AAAAA-CAGATTAGTATGAAAATTAAAATTACAAAATAAAGTTAAAAAAGCAACACAGACTTATATCTACACTGTGATGATGGAGactcacaaggtttgaatcctgggcaagttcctctctagacctcaaa---tctcacctg-gagtgtgatgagacccatcagaaagggttggtttgaggtctaaatgtga-taattcacgtatagtgcctagaaagcattcag------------------------------------------------------------------------------tacatgttagcagtcattaT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1976692 317 -   2117846 AATTCACCTCGA-----TAAAAGTGC-------------------AATTACATTATACTGACACTAAGACaaaaaaaaaaaaaaaaaaaaaaaaaaaa-aaaTCACAGATTAGTATGAAAATTAAAACTACAAAATTAAGTGAAACAAGCAACACAGACTTCTATCTATAGTGTGATGATGGAGATTCACGAtgtctgaatcctgggcaggttcctctctggacctcaaatattctcacctg--agtgtgatgagacccaccaaaaagggttggtttgagatttaaatatga-taattcatgtatagtgcttagaaagcattcag------------------------------------------------------------------------------tacatgttagcagtcattac
i calJac3.chrUn_GL286373    I 301 C 0
s canFam3.chr10              46121358 289 -  69331447 AA---GCCTCAA-TGTCTAATAGTGCAGGCAGGAGTACTTGCCTAAATTCCGTTACAT---------ATTAAA-------------------ACAATA-TACGTTTAAGTTACTATGCAAGTTAAAATTACAAGATTAAGTGAAAAAAGCAACACAGCCTAGTATCTCTAGT-TAATGGCAGAGACTCTCTAGGTCTGGATCCTGGAC------------------TCAG---TTTCATTTGGGAGCACGAAGAAacccacctcagagggttactttgaggtttaaaagtga-taattcatgcaaagtgcttggAAAGCACTCAA------------------------------------------------------------------------------TCCATGTTAGCAATTGTTAC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I

a score=477301.000000
s hg38.chr22_GL383582v2_alt    108587 153 +    162811 agtcattcctggcatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattatgta
s panTro4.chr22              40933654 153 +  49737984 agtcattcctggcatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattacgta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37473939 153 +  46535552 agtcattcctggtatccatgaaggaccaattccaggacctctgccaataccaaactccacggatgcccaagtctcttatataaaatagcacagtatttgtatataagctaaacacatcctcctgtatactttaagccatctctagattatgta
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681687 153 - 115148730 agtcattcctggtatccatggaggactggttccaggacctctgccaataccaaactccacggatgcccaagtctcttatataaaatagcacagtatttgcatataagctaagcacatcctcctgtatactttaagccatctctagattacgta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86986611 153 +  95678458 agccgttcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatccttctgtatactttaagctatctctagattacgta
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87641181 153 -  96509753 agccattcctggtatccatggaggactggttccaggacctctgccaataccaaactccatggatgcccaagtcgcttatataaaatagcacagtatttgtatataagctaagcacatccttctgtatactttaagctatctctagattacgta
i macFas5.chr10             C 0 I 2214
s papAnu2.chr10              82469515 153 +  90941950 AGCCATTCCTGGTATCCATGGAGGACTGGTTCTAGGACCTCTGCCAATACCAAACTCCATGGATGCCcaagtctcttatataaaataGCACAGTATTTGTATATAAGCTaagcacatcctcctgtatactttaagcCATCTCTAGATTACGTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24730438 153 +  33263144 agccgttcctggtatccatggaggactggttccaggagctctgccaataccaaactccatggatgcccaagtctcttatataaaatagcacagtatttgtatataagctaagcacatcctcctgtatactttaagccatctctagattacgta
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977009 152 -   2117846 agtcgctcctggtatccacggaggactggttccaggacctctgccaatatcaaactccat-gatgcccaagtctcttatataaaatagcatggtatttgtatgtaggctaagcacatcctgctgtatactttaagtcatctcgagattactta
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I
e canFam3.chr10              46121647   0 -  69331447 C

a score=212316.000000
s hg38.chr22_GL383582v2_alt    108740 112 +    162811 tgatacctaatatgatgtagctaatgctatgcaaagttgt-tatactttctcatttagagaataatgacaagaagaaaaaagtctgtatatattcagaacagatggaatttt----t
s panTro4.chr22              40933807 112 +  49737984 tgatacctaatatgatgtagctaatgctatgcaaagttgt-tacactttctcatttagagaataatgacaagaagaaaaaagtctgtatatattcagaacagatggaatttt----t
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474092 116 +  46535552 tgatacctaatatgatgtaactaatgctatgcaaagttgt-tatactttctcatttagagaataatgacaagaagaaaaaagtctgtatatattcagaacagatggaatttttccct
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681840  97 - 115148730 tgatacctaata-----taactaatactatgcaaagttgt-tatactttctcatttagagaataatgacaagaaaaagg--------------tcagaacagatgaagtttttccct
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86986764 113 +  95678458 tgatatccaatatgatgtaactaatactatgcaaagttgtttatactttctcatctagaaaataatgacaagaagaaaaaagtctgtatatattcaggacaaattgtatttt----t
i rheMac3.chr10             C 0 I 55
s papAnu2.chr10              82469668 113 +  90941950 TGATATCCAATATGATGTAACTAATACTATGCAAAGTTGTGTATACTTTGTCATCtagaaaataatgacaagaagaaaaaagtctgtatatATTCAGGACAAATGGAATTtt----t
i papAnu2.chr10             C 0 I 4
s chlSab2.chr19              24730591 113 +  33263144 tgatatccaatatgatgtaactaatactaggcaaagttgtttatactttctcatctagaaaataatgacaagaagaaaaaagtctgtatatattcaggacaaatggaaTTTT----T
i chlSab2.chr19             C 0 I 4
s calJac3.chrUn_GL286373      1977161 103 -   2117846 tgatatctaatatgatgtaaataatgttaggcaaagttgt-tatgctgtatcatttagagagt---------aagaaaaaagtctgcatatattcagaacagatgaaatttt----t
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I
e canFam3.chr10              46121647   0 -  69331447 C
e macFas5.chr10              87641334 2214 -  96509753 I

a score=4226.000000
s hg38.chr22_GL383582v2_alt    108852 9 +    162811 ccaagtttt
s panTro4.chr22              40933919 9 +  49737984 ccaagtttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474208 9 +  46535552 ccaaatatc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106681937 9 - 115148730 ccaaaaatt
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82469785 9 +  90941950 ccatttttt
i papAnu2.chr10             I 4 I 8
s chlSab2.chr19              24730708 9 +  33263144 CCttttttt
i chlSab2.chr19             I 4 I 2
e mm10.chr15                 82840349 84 + 104043685 I
e canFam3.chr10              46121647 0 -  69331447 C
e calJac3.chrUn_GL286373      1977264 0 -   2117846 C
e macFas5.chr10              87641334 2214 -  96509753 I
e rheMac3.chr10              86986877 55 +  95678458 I

a score=21165.000000
s hg38.chr22_GL383582v2_alt    108861 17 +    162811 tttttttttttt--------------gagac
s panTro4.chr22              40933928 31 +  49737984 ttttttttttttttttttttttttttgagac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474217 21 +  46535552 tttttttttttt----------ttttgagac
i ponAbe2.chr22             C 0 I 2
s nomLeu3.chr7b             106681946 30 - 115148730 tttttttttttt-tttttttttttttgagac
i nomLeu3.chr7b             C 0 I 2
s macFas5.chr10              87643548 17 -  96509753 ttctttttgttt--------------gagat
i macFas5.chr10             I 2214 I 2
s papAnu2.chr10              82469802 17 +  90941950 tttttttttttt--------------gagac
i papAnu2.chr10             I 8 I 2
s chlSab2.chr19              24730719 17 +  33263144 tctttttttttt--------------gagac
i chlSab2.chr19             I 2 I 2
e mm10.chr15                 82840349 84 + 104043685 I
e canFam3.chr10              46121647  0 -  69331447 C
e calJac3.chrUn_GL286373      1977264  0 -   2117846 C
e rheMac3.chr10              86986877 55 +  95678458 I

a score=273513.000000
s hg38.chr22_GL383582v2_alt    108878 128 +    162811 agtctcgctgtgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcct-gggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc---ccgcca
s panTro4.chr22              40933959 128 +  49737984 agtctcgctgtgtcgcctaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcct-gggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc---ccacca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474240 128 +  46535552 agtctcgctctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcct-gggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgc---ccacca
i ponAbe2.chr22             I 2 C 0
s nomLeu3.chr7b             106681978 128 - 115148730 agtctcggtctgttgcccaggcaggagtgcagtggcatgatcttggctcactgcaagctccgcctcct-gggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc---ccacca
i nomLeu3.chr7b             I 2 C 0
s rheMac3.chr10              86986932 132 +  95678458 agtcttgctctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcccgagtttcaagccattcttctacctcagcctccctagtagctggaattacaggcgtgcagcacca
i rheMac3.chr10             I 55 C 0
s macFas5.chr10              87643567 132 -  96509753 agtcttgctctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctctgcctcccgagtttcaagccattcttctacctcagcctccctagtagctggaattacaggcgtgcagcacca
i macFas5.chr10             I 2 C 0
s papAnu2.chr10              82469821 128 +  90941950 agtcttgctttgttgcccaggctggagtgcagtggtgtgatctcggctcactgcaagctctgccttcc-aggttcacaccattctcctgcctcagtctcctgagtagctgagactacaagcac---ctgcca
i papAnu2.chr10             I 2 C 0
s chlSab2.chr19              24730738 128 +  33263144 agtcttgctctgttgcccaggctggagtgcagtggtgtgatctcggctcactgcaagctctgccttcc-gggttcacaccattctcctgcctcagtctcctgagtagctgagactacaagcac---ctgcca
i chlSab2.chr19             I 2 I 216
e mm10.chr15                 82840349  84 + 104043685 I
e canFam3.chr10              46121647   0 -  69331447 C
e calJac3.chrUn_GL286373      1977264   0 -   2117846 C

a score=45229.000000
s hg38.chr22_GL383582v2_alt    109006 27 +    162811 ccacgtccagctaa-ttttttttgtatt
s panTro4.chr22              40934087 27 +  49737984 ccacgtccagctaa-ttttttttgtatt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474368 28 +  46535552 ccacgtccggctaatttttttttgtatt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682106 24 - 115148730 ccacgtccggctaa----tttttgtatt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987064 24 +  95678458 ccacatccagctaa----cttttgtata
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87643699 24 -  96509753 ccacatccagctaa----cttttgtata
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82469949 27 +  90941950 ccacgctcggctaa-ttttttttgtatt
i papAnu2.chr10             C 0 I 214
s chlSab2.chr19              24731082 24 +  33263144 ccacatccagctaa----cttttgtata
i chlSab2.chr19             I 216 C 0
e mm10.chr15                 82840349 84 + 104043685 I
e canFam3.chr10              46121647  0 -  69331447 C
e calJac3.chrUn_GL286373      1977264  0 -   2117846 C

a score=295795.000000
s hg38.chr22_GL383582v2_alt    109033 123 +    162811 tttagtagagacagggtttcactgtgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacaggcgtgagccactgcgccctgcc
s panTro4.chr22              40934114 123 +  49737984 tttagtagagatggggtttcactgtgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacaggcgtgagccactgcgccccgcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474396 123 +  46535552 cttagtagagacagggtttcactgtgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttccgggattacaggcgtgagccactgcgccccgcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682130 123 - 115148730 tttagtagagacggggtttcactgtgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaggttctgggattacacgcgtgagccactgtgccccgcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987088 123 +  95678458 tttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87643723 123 -  96509753 tttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82470190 123 +  90941950 tttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcCCGCC
i papAnu2.chr10             I 214 C 0
s chlSab2.chr19              24731106 123 +  33263144 tttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacttcagatgatccacccaccttggccttccaagtttctgggattacaggcatgagacactgtggcccgcc
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I
e canFam3.chr10              46121647   0 -  69331447 C
e calJac3.chrUn_GL286373      1977264   0 -   2117846 C

a score=218365.000000
s hg38.chr22_GL383582v2_alt    109156 76 +    162811 ccctccaaatatttccaatctgctgttgattgaatctaagaatgcagaacccatgaatatg----ggaagctaactgTAT
s panTro4.chr22              40934237 76 +  49737984 ccctccaaatatttccaatctgctgttgattgaatctaagaatgcagaacccatgaatatg----ggaagctaactgTAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474519 72 +  46535552 ccctccaaatatttccaatctgctgttgac----tctaagaatgcagaacccatgaatatg----ggaagctgactgTAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682253 72 - 115148730 ccctccaaatatttccagtctgctgttgaa----tctaagaatgcagaacccatgaatatg----ggaagctgcctatat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987211 76 +  95678458 ccctccaattattttcaatctgctgttgattgaatccaagaacgcagaacccatgaatatg----ggaagctgactgTAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87643846 76 -  96509753 CCctccaattattttcaatctgctgttgattgaatccaagaacgcagaacccatgaatatg----ggaagctgactgTAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82470313 76 +  90941950 CCCTCCAATTATTTTCAATCTGCTGTTGATTGAATCCAAGAATGCAGAACCCATGAATATG----GGGAGCTGACTGTAT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24731229 76 +  33263144 CCctccaattattttcaatctgctgttgattgaatccaagaatgcagaacccatgaatatg----gggagctgactgTAT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977264 80 -   2117846 ccctccaaatattttcaatctgctgttgattgaatccaagaatgtagaacccatgaacatggggagggagctgactgTAT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82840349 84 + 104043685 I
e canFam3.chr10              46121647  0 -  69331447 C

a score=736772.000000
s hg38.chr22_GL383582v2_alt    109232 241 +    162811 TATACTATT---ATATCTAGTGAAATAATC-AGCACATGGACAAAATCTAG--AAGAGTCAGATATGTTGGGTTATCAGGATTGCGG----CATTCTTCTACGAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATACTG-------TTATCTTTATGTAAATA--------ATATGTAAA---------TCTTTTTCATGACTCAGGAGTTCAAATGGGAACCCTGACCAGCACAGATGGTGCCAGCACCTCATCTAAACCCTGTGGCCAATTTT
s panTro4.chr22              40934313 241 +  49737984 TATACTATT---ATATCTAGTGAAATAATC-AGCACATGGACAAAATCTAG--AAGAGTCAGATATGTTGGGTTATCAGGATTGCGG----CATTCTTCTACGAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATACTG-------TTATCTTTATGTAAATA--------ATATGTAAA---------TCTTTTTCATGACTCAGGAGTTCAAATGGGAACCCTGACCAGCACAGATGGTGCCAGCACCTCATCTAAACCCTGTGGCCAGTTTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474591 243 +  46535552 TATACTATT---ATATCTAGTGAAATAATC-AGCACATGGACAAAATCTAGAAAAGAGTCAGATACGTTGGGTTATCAGGATTGCGG----CGTTCTTTTAATAACAGTTCCATTAGTTTTACAA-----------TAAGAATAAGACTG-------TTATCTTTATGTAAATA--------ATATGTAAA---------TATTTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCAGCACAGATGGTGCCAGCAACTCATCTAAACCCTGCGGCCAGTTTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682325 250 - 115148730 tatactatt---atATGTAGTGAAATAATC-AGCACATGGACAAAATCTAG--AAAAG--AGATATGTTGGGTTATCAGGATCGTGG----CGTTCTTTTACTAACAGTTCCATTAGTTTTACTAATAATAATACTTAAGAATAATACTG-------TTATCTTTATGTAAATA--------CTATGTAAA---------TCTTTTTCATGACTCAGGAGTACAACTGGGAACCCTGACTAGCACAGATGGTGCCAGCACCTCATCTAAACCCTGAGGCCAGTTTA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987287 237 +  95678458 TACACTATT---GTATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAAAGAGGCAGATATGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAT-----------TAATAATAA---TG-------TTATCTTTATGTAAATA--------ATACATAAA------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCAGCACGGATGGTGCCAGCACCTCATCTAAACGCTGAGGCCAGTTTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87643922 237 -  96509753 TATACTATT---GTATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAAAGAGGCAGATATGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAATAATAA---TG-------TTATCTTTATGTAAATA--------ATACATAAA------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCAGCACGGATGGTGCCAGCACCTCATCTAAACGCTGCGGCCAGTTTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82470389 240 +  90941950 TATACTATT---GTATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAAAGAGGCAGATATGCTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAgttttacaa-----------taataataatactg-------ttatctttatgtaaata--------atacataaa------------ttttcATGACTCAGGAGTACAACTGGGAACCTTGACCAGCACGGATGGTGCCAGTACCTCATCTAAACGCTGCGGCcagttta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24731305 240 +  33263144 TATACTATT---GTATCTAGTGAAATAATC-AGCACATGGACAAAGTCTAGAAAAGAGGCAGATATGTTGGGTTATCAGGATTATGG----CATTCTTTTACTAACAGTTCCATTAGTTTTACAA-----------TAAGAATAATACTG-------TTATCTTTATGTAAATA--------ATACATAAA------------TTTTCATGACTCAGGAGTACAACTGGGAACCTTGACCAGCACGTATGGTGCCAGCACCTCATCTAAACCCTGCGGCCAGTTTA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977344 242 -   2117846 TACACTATT---ATATCTAGTTAAATCATC-AGCACATGGACAAAATCTAGGAAAGAGGGAGATATGCTGGG-TATCAGGATTGTGGCTGACTTCCTTTTACTAACAGTTCCATTTGTTTTACAA-----------TACGAATAATACTG-------TTACTTTTATGCAAA-----------TATGTAAA---------TATTTTTCATGACTCAGGAGTACAACTGGGAATCTCGACCAGCATA-ATGGTACCAGCACCTCATGTAAACCCTGTGGCCACTTTA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46121647 269 -  69331447 TACACTATTACCATATCTAGTAAAACAAGCAAGCACATGGACAAAATCTAGAAAAGAGGCAAACTTAGTGGGTTATCAGGATTGTGG----TTTGCCTTTACCTACAGTTCTAGTAGTTTTACAA-----------TACGAGTAACACTGTAATCATTTACTCTTATGTAAACATGTAATTCGTTCATAAAAGGTATTTTACCTTTTCAAAACTTATGAGTTAAGACTGAGCCTCAAGCC--CACAGACACACCCAGCACCCCCTCTAAACCCTGTGGCCAGTTTG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840349  84 + 104043685 I

a score=770003.000000
s hg38.chr22_GL383582v2_alt    109473 275 +    162811 -----TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCTCCT------------------------TCC-----------TATGGG------------CAGAGCGACGATTCCCACTTCAGAGCCCATTTCACCATAGAGTCATGTGGTAGCACTTTGCCTAGCCTCAATTCAGTGCAT-AAAGGCAC-GAGGCTG--CATTCT-GAAACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGAGGTTTTCTTCAGGCCCATAAA---AATGTTTGACATGTGCTC-TTTCTCAGTGTAATTAAATACAGTCTTGGTTTTTCACCAC-------ATTGTCAG-TA
s panTro4.chr22              40934554 275 +  49737984 -----TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCTCCT------------------------TCC-----------TATGGG------------CAGAGAGACGATTCCCACTTTAGAGCCCATTTCACCATAGAGTCATGTGGTAGCACTTTGCCTAGCCTCAATTCAGTGCAT-AAAGGCAT-GAGGCTG--CATTCT-GAAACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGAGGTTTTCTTCAGGCCCATAAA---AATGTTTGACATGTGCTC-TTTCTCAGTGTAATTAAATACAGTCTTGGTTTTTCACCAC-------ATTGTCAG-TA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37474834 273 +  46535552 -----TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCCACT------------------------TCC-----------TATGGG------------TAGAGCGACGATTCCTACTTCAGAGCCCATTTCACCATAGAGTCAAGTGCTAGCACTTTGCCTAGCCTCAATTCAGTGCAT-AAAGGCACTGAGGCTG--CATTCT-AAAACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAGACATTTTCTTCAGGCCCATAAA---AATGTTTAACATGTGCTCTTTTCTCAGTGTAATGAAATATAGTCTTGGTTTTTCACAAC-------ATT----G-TA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682575 276 - 115148730 -----TCTTTTCTTCTGCC-TTTTC------CCATGTTTCTTGCCACT------------------------TCC-----------TATGGA------------TAGAGCGACGATTCCCATTTCAGAGCCCATCTCACCATAGAGTCAAGTGCTAGCACTTTGCCTAGCCTCAATTCAGTGCAT-AAAGGCACTGAGGCTG--CATTCT-GAAACT--GAGGAAATAGGGTACAACTGTGCACAAC-------AGAAAGGTTTTCTTCAGGCCCATAAA---AATGTTTGACATGTGCTC-TCTCTCAGTGTAATTAAATACAGTCTTGGTTTTTCACCAC-------ATTGTCAG-TA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987524 264 +  95678458 -----TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAGAGCAACGATTCCCACTTCAGAGCCCATTTCGCTATA-----AAGTGCTAGCACTTGGCCTCGTCTCAGTTCAGTGCAT-AAAGGCACTGAGGCTGCACATTCT-GAAACC--GAGGCAACAGGGTGC-AC--TGCACAGC-------AGAGAGGTCTTCTTCAGGCCCATAAA---AATGTTTGATATGTGCTC-TTTCTCAG-----TTAAACACAGTCTTGA-TTTTCACCAT-------GTTGTCAG-TA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644159 264 -  96509753 -----TCTTTTCTTCTGCC-TTTTC------CCACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAGAGCAACGATTCCCACTTCAGAGCCCATGTCGCTATA-----AAGTGCTAGCACTTGGCCTCGTCTCAGTTCAGTGCAT-AAAGGCACTGAGGCTGCACATTCT-GAAACC--GAGGCAACAGGGTGC-AC--TGCACAGC-------AGAGAGGTCTTCTTCAGGCCCATAAA---AATGTTTGATGTGTGCTC-TTTCTCAG-----TTAAACACAGTCTTGG-TTTTCACCAC-------GTTGTCAG-TA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82470629 268 +  90941950 -----tcttttcttctgcc-ttttc------ccACGTTTCCTGCCGCT------------------------TCC-----------TATGGG------------TAGAGCAACGATTCCCACTTCAGAGCCCATTTCGCTATA-----AAGTGCTAGCACTTGGCCTAGTCTCAATTCAGTGCATAAAAGGCACTGAGGCTG--cattct-gaaact--gaggcaataggGTGCAAC--TGCACAAC-------AGAGAGGTTTTCTTCAGACCCATAAA---AATGTTTGATATGTGCTC-TTTCTCAGT-TAATTAAACATAGTCTTGG-TTTTCACCAC-------ATTGTCAG-Ta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24731545 268 +  33263144 -----TCTTTTCTTCTGCCTTTTTC------CCATGTTTCCTGCTACT------------------------TCC-----------TATGGG------------TACAGCAACGAATCCCACTTCAGAGCCCATTTCGCCATA-----AAGTGCTAGCACTTGGCCTAGTCTCAATTCAGTGCAT-AAAGGCACTGAGGCTG--CATTCT-GAAACT--GAGGCAATAGGGTGCAAC--TGCACAAC-------AGAGAGGTTTTCTTCAGGCCCATAAA---AATGTTTGATATGTGCTC-TTTCTCAGT-TAATTAAATACAGTCTTGG-TTTTCACCAC-------ATTGTCAG-TA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977586 275 -   2117846 -----TCTTTTCTTCTGCC-TCTTC------CCATGTTTCTTGCCACT------------------------TCC-----------TATGGG------------CAGAGGGACAATTCCTACTTCAGAACCCATTTCACTGGAGAGTAAAGTGCAAGCACTCTGCCTAGCCTCAATTCCGTGCAT-AATGGCACTCAAGCTG--CATTCT-GAAACT--GAGGAAATAGGGTGACACTGTGCACAAC-------AGAGAGGTTTTCTTCAGACCAAT-CA---AATGTTTGATACATGCTC-TTTCTCAGTATAATTAAGCACAGTCTTGGCTTTCCACCAC-------ATTGTCAA-TA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82840433 315 + 104043685 -----TCTTCTCTTTTGCA-TTTCCGAATATCTCCATTTCCTGTCACT-------GGAATTATGTCAGG---CCC-----------TCAGAGAAAGTATGCATCCATAGCATCAATTTCCACTTCAAAGCCCATTTGAATAAACAGTAAAGT---AGTGCATTGTCTAGTTTCAATTCAATGTAC-AAAAGC-TTTAAGCTA--CTTTCTAGGAACT--CTGGGAAATAGTTGCTAC--TATGCAACCATATGTAGAGAGGGGGTATT--GGACAGT-AA---AATCACTGATTTGCCTCG-GATCTAACCACAATTAAATGTAATTGTAGTTTCCTAATACTATATATACTGTGAACTA
i mm10.chr15                I 84 C 0
s canFam3.chr10              46121916 301 -  69331447 TTAAGCCTGCTCTTCTGCC-CTTTC------CCA-ATGTCCTGCTTCTTGTGAGTGGAACTGTCTCAGACCCTCCAAAAATAAGTGTCTGTG------------CATAGTGACAATCTGAACCTCTGGACCCTAATGACCTCAAAGTAAAGTGCATGCAC-----------TCAGTTCAACACAC-AGAGAC-CTGAGGCTA--CCTCCT-GGAACTCCGAGAAAATGAAGCGCTACCTTGCACAGC-------AG------CTTTTTCAGGCCCCCAAAAGTAATGCTTCATATCAGCTA-CTTCTTACTATAATTAAATGCAAT-TTAGTATTCCACTGT-------GTTGTCAA-TA
i canFam3.chr10             C 0 C 0

a score=55575.000000
s hg38.chr22_GL383582v2_alt    109748 14 +    162811 TCTTGGGAAAATTA
s panTro4.chr22              40934829 14 +  49737984 TCTTGGGAAAATTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475107 14 +  46535552 TCTTGGGAAAATTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682851 14 - 115148730 TCTTGGGAAAATTA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987788 14 +  95678458 TCTTGGGAGAATTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644423 14 -  96509753 TCTTGGGAAAATTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82470897 14 +  90941950 tcttgggaaaatta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24731813 14 +  33263144 TCTTGGGAAAATTA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977861 14 -   2117846 TCTTGGGAAAATTA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82840748 14 + 104043685 TCTTGAGAAAGTTA
i mm10.chr15                C 0 I 419
e canFam3.chr10              46122217  0 -  69331447 C

a score=332294.000000
s hg38.chr22_GL383582v2_alt    109762 115 +    162811 TTTTAAAAGTCTAAACAggccaggtgtggtggctcaggcctgtaatcccgacactttgggaggccaaggcaagtggatcacctgaggtcagcagttcgagaccagactggctaac
s panTro4.chr22              40934843 115 +  49737984 TTTTAAAAGTCTAAACAggccaggtgtggtggctcaggcctgtaatcccgacactttgggaggccaaggcaggtggatcacctgaggtcagcagttcgagaccagactggctaac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475121 113 +  46535552 TTTTAAAAGTCTAAACAggccaggtgtggtggctcagacctgtaatcccgacactttgggaggcccaggcaggtggatcacctgaggtcaggagt--gagaccagactggctaac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682865 115 - 115148730 TTTTAAAAGTCTAAGCAggccaggtatggtggctcaggcctgtaaccctgacactttgggaggccaaggcagatggatcacctgaggtcaggagtttgagaccagatgggctaac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987802 115 +  95678458 TTTTAAAAGCCTAAACAggccaagtgtggtggctcaggcctgtaatcccaacactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagactggcaaac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644437 115 -  96509753 TTTTAAAAGCCTAAACAggccaagtgtggtggctcaggcctgtaatcccaacactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagactggcaaac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82470911 115 +  90941950 ttttaaaagcctaaacaggccaagtgtggtggctcaggcctgtaatcccaacactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagaccagactggcaaac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24731827 115 +  33263144 TTTTAAAAGCCTACACAggccaagtgtggtggctcaggcctgtaatcccaagactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagactggctaac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977875 113 -   2117846 TTTCAAAAGCCTAAAAAggccagacgtggtggctcacacctgcaatcccagcactctgggaggccgaggtgggtgaattac--gaggtcaggatttcaagaccagcatggtcaac
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82840762 419 + 104043685 I
e canFam3.chr10              46122217   0 -  69331447 C

a score=276825.000000
s hg38.chr22_GL383582v2_alt    109877 174 +    162811 atggcaaaaccccatctctacaaaaaaaaaaaa---aaaaaaaaaaaaaaaaaaaattagccagatgtg------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgggatcgcaccactgcactccagactgggca---agagt--gactctgtccaaaaaaaaaaaa------------------aa
s panTro4.chr22              40934958 171 +  49737984 atggcaaaaccccatctctaccaaaaaaaaaaa---aaaaaaaaaaaaaaaaaaa-ttagccagatgtg------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgggatcgcaccactgcactccagactgggca---agagt--gactctgtccaaaaaaaaaaaa--------------------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475234 192 +  46535552 atggcgaaaccccatctctacaaaaaaaaaaaa---aaaaaaaaaaaaaaaata--ttagccagatgcg------------------------------------gtgacaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgggattgcaccactgcactccagactgacca-acagagt--gactctgtccaaaaaaaaaaaaaaaaaaaccaaaaaaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106682980 132 - 115148730 acggcaaaaccccatctctacaaaaaaaaaaaa---aaaaaaaaaa------------agccagatgtg------------------------------------gtgacaggagaatcgtttga------------------------------------tccactgtactccagactgggca-acagagt--gactctgtccaaaaaaaaaaaa--------------aaaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86987917 168 +  95678458 atggcaaaaccccatccctaaaaaaaaaaaaaa---gaaaagaaaaagaaaaaaa-ttagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcagaggttgcag-----tgggattgcaccactgcactccagactgg--aaacagagtgagactctgtcc-aaaaaaaaaaa--------------------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644552 173 -  96509753 atggcaaaaccccatctctaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaa-ttagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcagaggttgcag-----tgggattgcaccactgcactccagactgggcaaacagagtgagactctgtcc-aaaaaaaaaaa--------------------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82471026 167 +  90941950 atggcaaaaccccatctctaaaaaaaaaaaaaa-------aaagaaagaaaaaaa-ttagccagatgca------------------------------------gaggcaggagaattgcttgaccctgggaggcagaggttgcag-----tgggattgcaccactgcactccagactgggcaaacagagtgagactctgtccaaaaaaaaaaaa--------------------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24731942 146 +  33263144 atggcaaaaccccatctcta----------------------------aaaaaat-taagccagatgtg------------------------------------gaggcaggagaattgcttgaacctgggaggcagaggttgcag-----tgggattgcaccactgcactccagactgggcaaacagagtgagactctgtccaaaaaagaaaaa--------------------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1977988 191 -   2117846 atggtgaaatcccatctctactaaaaatagaaa--------------------aa-ttagccaggcgtggtgggcacacctgtaggcctagctactcgggaggctgaggcaggagagttgcttgaacccgggaggtggaggttgcagtgagccgagattgtgccactgcactccagtctgggtg----aagtgataatgtctcaaaaaaagaaaaa--------------------
i calJac3.chrUn_GL286373    C 0 I 8
s canFam3.chr10              46122217  56 -  69331447 ATGTCAATGTCCTG-------AAAAATGAGAAA---------------ACCAAAA-ATAGCCA------------------------------------------ATGAC--------------------------------------------------CTCTTCTGTGC-----------------------------------------------------------------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840762 419 + 104043685 I

a score=269484.000000
s hg38.chr22_GL383582v2_alt    110051 120 +    162811 GCCCAAACAGCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATGATGATAGCTTAAATTTTTTTGGTATCTTTTTGGGATTCTC-TGGGT-----TTTTTCTTTTTTAT
s panTro4.chr22              40935129 120 +  49737984 GCCCAAACAGCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAATTTTCTTGGTATCTTTTTGGGATTCTC-TGGGT-----TTTTTCTTTTTTAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475426 120 +  46535552 CCCCAAACAGCAAGTTA-----TCCTTTCTGCTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAATTTTTTTGATATCTTTTTGGGATTCTC-TGGGT-----TTTTTCTTTTTTAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106683112 125 - 115148730 GCCCAAACAGCAAGTTATCCTTTCCTTTCTGTTTCCCCTTCCAATTACATTTTAGG-AATAATTATAATGATAGCTTAAATTTTTCTGATATCTTTTTGGGATTCTC-TGGGT-----TTTTTCTTTTTTAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86988085 118 +  95678458 GCCCAAACAGCAAGCTA-----TCCTTTCTGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAATTTTTTTGACAACTTTTTGGGATTCTC---TTT-----TTTTTTTTTTTAAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644725 121 -  96509753 GCCCAAACAGCAAGCTA-----TCCTTTCTGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAATTTTTTTGACATCTTTTTGGGATTCTCTCTTTT-----TTTTTTTTTTTAAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82471193 111 +  90941950 gccccaacaGCAAGCTA-----TCC--TCTGTTTCCCCTTCCAATTGCATTTTAGG-AATAATTATAATGACAGCTTAAATTCTTTTGACATCTTTTtgggattctc-------------tttttttttaat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24732088 119 +  33263144 GCCCAAACAGCAAGTTA-----TCCTTTCTGTTTCCCCTTCCAATTGTATTTTAGG-AATAATTATTATGACAGCTTAAATTTTTTTGACATCTTTTTGGGAttctt--tttt-----tttttttttttAAT
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46122273 101 -  69331447 ----------------------------CTTTTCCTGCTCCCAACCATATTATAGGCAATAATTGTAATGGTGGCTT-AATGTCTTTGATACCTTTTTAGAGTTCTC-TACGTGGGAATTTTTTTTTTTTA-
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840762 419 + 104043685 I
e calJac3.chrUn_GL286373      1978179   8 -   2117846 I

a score=110435.000000
s hg38.chr22_GL383582v2_alt    110171 36 +    162811 AAACAT---------GACACAGACCTCATGATTTCCTATTTTTCT
s panTro4.chr22              40935249 36 +  49737984 AAACAT---------GACACAGACCTCATGATTTCCTATTTTTCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475546 36 +  46535552 AAACAT---------GACACAGACCTCATGATTTCCTATTTTTCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106683237 34 - 115148730 AAACAT---------G--ACAGACCTCATGATTTCCTATTTTTCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86988203 36 +  95678458 AAACAT---------AACACAGACCTCATGATTTCCTATTTTTCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644846 36 -  96509753 AAACAT---------AACACAGACCTCATGATTTCCTATTTTTCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82471304 45 +  90941950 aaacataaataaacaaaaataaacctcaTGATTTCCTATTATTCT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24732207 36 +  33263144 AAACAT---------AACACAGACCTCACGATTTCCTATTTTTCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1978187 36 -   2117846 aaaaaa---------gacaCAGACCTCATGATTTCCTATTTTTCT
i calJac3.chrUn_GL286373    I 8 C 0
s canFam3.chr10              46122374 27 -  69331447 ----AA---------GACACAGATCTCATGATTTCCTATT-----
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82840762 419 + 104043685 I

a score=1131260.000000
s hg38.chr22_GL383582v2_alt    110207 355 +    162811 CTCCACTTTCTTTCAA----TTTGGATTTAAAAATTTATCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAG---TTATTTAAAATGCTGTATTAGA---ATCTAGTGTTGACTTATCTAAACATGTATATTAGGCTGAACTGCCTTCATATCTAATATTTTCTT--GTCTAATACATATTAAACGCAAACCTAA-ATTTCTTTTCTTCAACCCTTCTTTCTGTTATTGGTAT-GTTGATGACCCCTCACCTCGCC----CACTGAC--ttgctgg---agctagaaacct--caacttcatccttgacctctgcctcctcactttcccaaacctgctgcatctagtcagtgtttaaaatctatcaacttta
s panTro4.chr22              40935285 355 +  49737984 CTCCACTTTCTTTCAA----TTTGGATTTAAAAATTTATCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAG---TTATTTAAAATGCTGTATTAGA---ATCTAGTGTTGACTTAtctaaacatgtatattaggctgaactgccttcatatctaatattttctt--gtctaatacatattaaacgcaaacctaa-atttcttttcttcaacgcttctttctgttattggtat-gttgatgacccctcacctcgcc----cactgac--ttgctgg---agctagaaacct--caacttcatccttgacctctgcctcctcactttcccaaacctgctgcatctagtcagtgtttaaaatctatcaacttta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475582 353 +  46535552 CCCCACTT--TTTCAA----TTTGGATTTAAAAATTTATCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGTAG---TTATTTAAAATGCTGTATTAGA---ATCTAGTGTTGACTTAtctaaacatgtatattaggctgaactgccttcatatctaatattttctt--gtctaatacatattaaacgcaaacctaa-atttcttttcttcaacccttctttctgttattggtat-gttgatgacccctcatcccgcc----cactgac--ttgctgg---agctagaaacct--caacttcatccttgacctctgcctcctcactttcccaaacctgccacatctagtcagtgtttaaaatctatcaacttta
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106683271 356 - 115148730 CTCCACTTTCTTTCAA----TTTGGATTTAAAAACTTATCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAG---TTATTTAAAATGCTGTATTAGA---ATCTAGTGTTGACTTACctaaacatgtatattaggctgaactgccttcataactaatattttctt--gtctaatacatattaaatgcaaacctaa-atttcttttcttcaacccttctttctgctattggtatagttgatgacccctcaccccgcc----cactgac--ttgctgg---agctagaaacct--caacttcatccttgacctctgcctcctcactttcccaaagctgccacatctagtcagtgtttaaaatctatcaacttta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86988239 345 +  95678458 CTCCA----CTTTCAA----TTTGGACTTAAAAATTTACCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAGCTCTTATTTAAAACGCTGTATTAGA---ATCTAGTGTTGACTGATCTAAAC------ATTAGGCTGaactgccttcatatctaatattttctt--gtctagtacatattaaatgcaaacctaa-atttcttttcttcaacccttctttctgttattggtat-gttgatgacccctcaccccacc----cactgac--ttgctgg---agctagaaacct--caacttcatccttgacctctg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaacttta
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87644882 345 -  96509753 CTCCA----CTTTCAA----TTTGGACTTAAAAATTTACCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAGCTCTTATTTAAAACGCTGTATTAGA---ATCTAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTTTCTT--GTCTAGTACATATTAAATGCAAACCTAA-ATTTCTTTTCTTCAACCCTTCTTTCTGTTATTGGTAT-GTTGATGACCCCTCaccccacc----cactgac--ttgctgg---agctagaaacct--caacttcatccttgacctctg---cctcactttcccaaacctgctacatctagtcagtgtttaaaatctatcaacttta
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82471349 349 +  90941950 CTCCACTTTCTTTCAA----TTTGGACTTAAAAATTTACCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAGCTCTTATTTAAAACGCTGTATTAGA---ATCTAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTTTGTT--GTCTAGTACATATTAAATGCAAacctaa-atttcttttcttcaactcTTCTTTCTGTTATTGGTAT-GTTGATgacccctcaccccacc----cactGAC--TTGCTGG---AGCTAGAAACCT--CAACTTCATCCTTGACCTCTG---CCTCACTTTCCCAAACCTGCTACATCTAGTCAGTGTTTAAAATTTATCAacttta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24732243 349 +  33263144 CTCCACTTTCTTTCAA----TTTGGACTTAAAAATTTACCAGT----TT-ACATCTATTTGAAAGGCTAAATAAAAAGCAAGCAGCTCTTATTTAAAATGCTGTATTAGA---ATGTAGTGTTGACTGATCTAAAC------ATTAGGCTGAACTGCCTTCATATCTAATATTTTCTT--GTCTACTACATATTAAATGCAAACCTAA-ATTTCTTTTCTTCAACCCTTCTTTCTGTTATTGGTAT-GTTGATGATCCCTCACCTCACC----CACTGAC--TTGCTGG---AGCTAGAAACCT--CGACTTCATCCTTGACCTCTG---CCTCACTTTCCCAAACCTGCTACATCTAGTCAGTGTTTAAAATCTATCAACTTTA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1978223 357 -   2117846 CTCCACTTTCTTTCAA----TGTGGATTTAAAATTTTACCAGTTTACTT-ACATCTATTTGAAAAGGCTAAAAGAAAGCAACCAGTTTTTATTTAAAATGCTATACTAGA---ATCTAGTGTTGACTGATCTCAGCATGTATATTGGGCTGAACTGTCTTCCTATCTAGTAT----TT--GTCTAGTACACATTAAATGCAAATCTAA-ATCTCTTTTCTTCAACCCTTCTTTCGGTTATTGTTAT-GTTGACGACCCCTaactccacc----cactgac--ttgctga---agctagaaacct--caacttcatccttgacctctgcctcctcacttacccaaacctgccacatctagtcaatgtttaaaatctatcaac-ttg
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82841181 338 + 104043685 CTCCCTTCTCTTGAAAGACTTCTAATTTTTAAAGTTTACTATT----TTCACATTTATTTGGAAAGTTAAGTAAAAATCAGTCCT---TATTTTAAAATTCTATATTAAA---GCCTACTGCTGATTG----TAACAGGTATTTGGGGCTGAACTACTTCCACATCAAGTTTTTTCTTCGTTCCACAGCATAGAAACTG------TAA-GTTTTT-----------CTCTTTCCCATCAGTGGTGT-CTTT----CCACGCACCTTACCACCATTCTAACCACTGCTGGCTAAACGAGAGCCTTAGCAGCCTTACCCTGAAC--------CTTCACTTACTTTTAGCTGCCCTACCTACTTAGTA--TAAAACCTACCCACTATA
i mm10.chr15                I 419 I 218
s canFam3.chr10              46122401 330 -  69331447 -TCCTCCTTCTTGCAA----CCTGGATT---AAGTTTCCTGGT----TTTATATTTATGCGAAAAGCAAAATAAAAACCAGCCAGTCCTTATGAAAAGTACCATACTGGAGACACAGAGTGCTGA-TGACTTGAACATGTGGATGTGGCTAGGCTGTTCTCAGATCTAGTGGTTTCTTCTGCCTGCTACACATCAGCTACAGAACGAAGGTCTCCCTTCT-----CTTTCTCACTCCCCTTTGTGT------------CTGACCCAGCC----CACT--C--TATCTGT-----CCAGTGACCT---------GCCCTGGctttatt---cctcacctcccattacctgccacatctaactggtttctggattctgttgacttta
i canFam3.chr10             C 0 I 386

a score=2555493.000000
s hg38.chr22_GL383582v2_alt    110562 910 +    162811  
s panTro4.chr22              40935640 918 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37475935 901 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106683627 928 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86988584 906 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87645227 902 -  96509753  
i macFas5.chr10             C 0 I 323
s papAnu2.chr10              82471698 906 +  90941950  
i papAnu2.chr10             C 0 I 337
s chlSab2.chr19              24732592 922 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1978580 910 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82841519 218 + 104043685 I
e canFam3.chr10              46122731 386 -  69331447 I

a score=8126.000000
s hg38.chr22_GL383582v2_alt    111472 3 +    162811 gcc
s panTro4.chr22              40936558 3 +  49737984 gcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37476836 3 +  46535552 gcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106684555 3 - 115148730 gtc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86989490 3 +  95678458 gtc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87646452 3 -  96509753 gcc
i macFas5.chr10             I 323 C 0
s papAnu2.chr10              82472941 3 +  90941950 gcc
i papAnu2.chr10             I 337 C 0
s chlSab2.chr19              24733514 3 +  33263144 gtc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1979490 3 -   2117846 gtc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82841519 218 + 104043685 I
e canFam3.chr10              46122731 386 -  69331447 I

a score=21690.000000
s hg38.chr22_GL383582v2_alt    111475 5 +    162811 tcagg
s panTro4.chr22              40936561 5 +  49737984 tcagg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37476839 5 +  46535552 tcagg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106684558 5 - 115148730 tcagg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86989493 5 +  95678458 tcagg
i rheMac3.chr10             C 0 I 322
s macFas5.chr10              87646455 5 -  96509753 tcagg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82472944 5 +  90941950 tcagg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24733517 5 +  33263144 tcagg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1979493 5 -   2117846 tcagg
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82841737 5 + 104043685 TCAGG
i mm10.chr15                I 218 C 0
e canFam3.chr10              46122731 386 -  69331447 I

a score=1281.000000
s hg38.chr22_GL383582v2_alt    111480  9 +    162811 tatttct--------------tt-
s panTro4.chr22              40936566  9 +  49737984 tatttct--------------tt-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37476844 19 +  46535552 tatttat----agcaatgcaata-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106684563 23 - 115148730 tatttctttatagcaatgcaata-
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87646460  9 -  96509753 catttct--------------tt-
i macFas5.chr10             C 0 I 14
s papAnu2.chr10              82472949  9 +  90941950 cattgct--------------tt-
i papAnu2.chr10             C 0 I 14
s chlSab2.chr19              24733522  9 +  33263144 catttct--------------tt-
i chlSab2.chr19             C 0 I 434
s calJac3.chrUn_GL286373      1979498  9 -   2117846 tatttta--------------ta-
i calJac3.chrUn_GL286373    C 0 I 11
s mm10.chr15                 82841742  9 + 104043685 -ATTACC--------------TTA
i mm10.chr15                C 0 C 0
e canFam3.chr10              46122731 386 -  69331447 I
e rheMac3.chr10              86989498 322 +  95678458 I

a score=1065407.000000
s hg38.chr22_GL383582v2_alt    111489 346 +    162811 acggactaatacaAGCCCTCT-GGAGTTCACATATTCTCAGTATATTCACTGTTTTAGGGGAGGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGA----TACACCACACAAACTCAGAATTCTTAATTATTTTGGGC----CTTTTAGTGCTGACATGTTAAAAAG-TTTACTTAAAAAAACAACTTTAgacca-ggcgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctcgccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggca
s panTro4.chr22              40936575 346 +  49737984 acggactaatacaAGCCCTCT-GGAGTTCACATATTCTCAGTATATTCACTGTTTTAGGGGAGGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGA----TACACCACACAAACTCAGAATTCTTAATTATTTTGGGC----CTTTTAGTGCTGACATGTTAAAAAG-TTTACTTAAAAAAACAACTTTAgacca-ggcgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37476863 350 +  46535552 atggactaatacaAGCCCTCT-GGAGTTCACATATTCTCGGTATATTCACTGTTTTGGGGGAGGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGG----TATACCACACAAACTCAGAATTGTTAATTATTTTGGCCCTTACTTTTAGTGCTGACATATTAAAAAG-TTTACTTAAAAAAAAAACTTTAGATca-ggtgcggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacgga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtaaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106684586 347 - 115148730 atggactaatacTAGCCCTCT-GGAGTTCACATATTCTCAGTATACTCACTGTTTTGGGGGAGGAGGTGGAATGCTATAGGGAAGTATTTGTCCTGAATCATTCTGTGGG----TATACCACACAAACTCAGAATTCT---TTATTTTGGGCCTTACTTTTAGTGCTGACATGTTAAAAAG-TGTACTTAAAAAAACAACTTTAgacca-ggcatggtg--gctcatgcctgtaatcccaacacttcgggaggctgaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcacggtggca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86989820 350 +  95678458 acggaccaatacaAGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACTGTTTCGGGGGAGGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGGCCTTACTTTTAGTGCTGACATGTTAAAAAG-TTTACTTAAAAAACCAACTTTAgacca-ggcgcggtg--gctcatgcctgtaatcccaccactttaggagtgtaaggcagagaga-tcagg-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggca
i rheMac3.chr10             I 322 C 0
s macFas5.chr10              87646483 350 -  96509753 atggaccaatacaAGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACTGTTTTGGGGGAGGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTCAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGGCCTTACTTTTAGTGCTGACATGTTAAAAAG-TTTACTTAAAAAACCAACTTTAgacca-ggcgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggca
i macFas5.chr10             I 14 C 0
s papAnu2.chr10              82472972 350 +  90941950 aCGGACCAATACAAGCCCTTT-GGAGTTCACATATTCTCCCTATATTCACTGTTTTGGGGGAGGAGGTGGAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTCGGAATTCTTAATTATCTGGGGCCTTACTTTTAGTGCTGACATGttaaaaag-tttacttaaaaaaacaactttagatca-ggtgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggca
i papAnu2.chr10             I 14 C 0
s chlSab2.chr19              24733965 350 +  33263144 acggaccaatacaAGGCCTCT-GGAGTTCACATATTCTCCCTATATTCACTGTTTTGGGGGAGGAGGTGAAGTGCTATAGGGAAGTATTTGTCCTGAACCATTCTGTGAG----TACACCACACAAACTTGGAATTCTTAATTATCTGGGGCCTTACTTTTAGTGCTGACATGTTAAAAAG-TTTACTTAAAAAAACAACTTTAgacca-ggcgcggtg--gctcatgcctgtaatcccaccactttaggaggctaaggcagacaga-tcagt-tgaggtcag--------------------------gagttggagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggca
i chlSab2.chr19             I 434 C 0
s calJac3.chrUn_GL286373      1979518 343 -   2117846 acagactaatataAGCCCTCT-GGAGTTGACATATTCTTGATATA-TCACTGTTTTGGGGGAGGAGGTGGAATGCTACAGGGAAGTATTTGTCCTGAATCATTCTGAGGG----TATACCGCACAAACTCAGAATTC----TTATTTTGGGCCTTA-TTTTAGTGCTGACATGTTAAAAAG-T-TACCTTAAAAAACAACTGTAggccg-ggcacggtg--gctcacacctgtaatcctagcactttgggaggctgaggtgggcaga-tcact-tgaggtcag--------------------------gagtttaagatcagcctggccaacatagtgaaaccccgtctctactaaaagtacaaaaattaaccaggcatggtggca
i calJac3.chrUn_GL286373    I 11 C 0
s mm10.chr15                 82841751 354 + 104043685 AAGCACCAAGGC--GTCCTCTAAGAGTTCACATATTT------CATTAACTG-----AGGAAGGGGAGGGACT------AGGAAATGTTTGCCTTAAATTACTCTACACACTTTTATACCACACAA---------TTTTAATTAGTCTGAGTCTCCATTATAATGCTAATATACTGAAAAGATTTACTTAAAAAATAAAAACAGGGTCAgggtggggtgaagggcacacctttaat---agcactg-gagaggcagaggtaggtagattcagtgtgagttcaaggctcacctggtctactatctatagtgagttctaga-cagctagaactatgtagaaagaccttgtctcaaaaaacaaaacaaaacaaaacaaaacaaaaATCCA
i mm10.chr15                C 0 I 112
e canFam3.chr10              46122731 386 -  69331447 I

a score=366770.000000
s hg38.chr22_GL383582v2_alt    111835 124 +    162811 ggtgcctgcaacttcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcgaaggtttcagtgagccgaaattgtgccattgcggtccagcctggggga-tagaggaagactc
s panTro4.chr22              40936921 124 +  49737984 ggtgcctgcaacttcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcgaaggtttcagtgagctgaaattgcgccattgcggtccagcctggggga-tagagcaagactc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37477213 124 +  46535552 ggtgcctgtaacttcagctactcaggaagctgaggcaggagaattgcctgaacctgggaggcggaggttgcagtgagccgaaattgcgccactgcactccagcctgggcga-tagagcaagactc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106684933 124 - 115148730 ggcgcctgtaacttcagctactcaggaggctgaggcaggagaattacttgaacctgggaggcggaggttgcagtgagccgaaattgcgccattgcactccagcctgggcga-cagaacgagactc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86990170 124 +  95678458 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcgcaggttgcagtgagccgagatcacgccattgcactccagcctgggcga-cagagcaagactc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87646833 124 -  96509753 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctgggaagcacaggttgcagtgagccgagatcacgccattgcactccagcctgggtga-cagagcaagactc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82473322 124 +  90941950 ggcgcctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcgcaggttgcagtgagccgagatcacgccattgtactccagcctgggtga-cagagcaagactc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24734315 124 +  33263144 ggcacctgtaatttcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccgagatcacgccattgcactccagcctgggtga-cagagcaagactc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1979861 125 -   2117846 ggtgcctataatcccagctactcaggaggctgaggcaggagaatttcatgaacctgggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctgggcaattagggcaagactc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82842105 112 + 104043685 I
e canFam3.chr10              46122731 386 -  69331447 I

a score=88809.000000
s hg38.chr22_GL383582v2_alt    111959 43 +    162811 -agtctcaaa-a---aaaaa----acaaaaccaaaccaa----aaaaaCCCAACTT
s panTro4.chr22              40937045 47 +  49737984 -agtctcaaa-a---caaaacaaaacaaaacaaaaccaa----aaaaacCCAACTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37477337 42 +  46535552 -agtctcaag-a---aacaa---aacaaaacaaaaac------aaaaaCCCAACTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106685057 48 - 115148730 -agtctcaaa-a---agcaa---aacaaaacaaaagcaaaaaCAAAAACCCAACTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86990294 42 +  95678458 -agtctcaaa-a---aacaa---aacaaaacaaaaac------aaaaaCCCAATTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87646957 42 -  96509753 -agtctcaaa-a---aacaa---aacaaaacaaaaac------aaaaaCCCAATTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82473446 42 +  90941950 -agtctcaaa-a---aacaa---aacaaaacaaaaac------aaaaacccaattt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24734439 42 +  33263144 -agtctcaaa-a---aacaa---aacaaaacaaaaac------aaaaaCCCAGTTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1979986 29 -   2117846 -agtctcaaaca---aacaa-----------------------aaaaaaCTATCTG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82842217 43 + 104043685 aattcccagg-actgcaaag---aaCAAAACCAA---------GTAAAACCAACTT
i mm10.chr15                I 112 C 0
e canFam3.chr10              46122731 386 -  69331447 I

a score=2505211.000000
s hg38.chr22_GL383582v2_alt    112002 790 +    162811  
s panTro4.chr22              40937092 790 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37477379 790 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106685105 784 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86990336 783 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87646999 783 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82473488 784 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24734481 783 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1980015 758 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82842260 936 + 104043685  
i mm10.chr15                C 0 I 117
s canFam3.chr10              46123117 715 -  69331447  
i canFam3.chr10             I 386 C 0

a score=914318.000000
s hg38.chr22_GL383582v2_alt    112792 308 +    162811 GATTTTCTCTTC---------TCATACGTTTT-------------------------TCCAATAA--------ATTGG--ACGAATCTGATCTGCAGTAGCAAGCCTTGAGGGTCCCGCGAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTCCTGAAACAGTATTGGATGAAGCAAGCCG-TATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGTGTGCGGCAAGGCATTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCGAGGCTGAGGCTGAGTCA
s panTro4.chr22              40937882 330 +  49737984 GATTTTCTCTTC---------TCATACGTTTCCACAAAGGACAACTTTCAAAGATTGTCCAATAA--------ATTGG--ACGAATCTGATCTGCAGTAGCAAGCCTTGAGGGTCCCGCGAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTCCTGAAACAGTATTGGA---AGAAAGCCG-TATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGTGTGCGGCAAGGCGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCGAGGCTGAGGCTGAGTCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37478169 308 +  46535552 GATTTTCTCTTC---------TCATACGTTTT-------------------------TCCAACAA--------ATTGG--ACGAAACTGATCTGCAGTAGCAAGCCTTGAGGGTCCTGCAAAATTGGCCTTGGCTTGGGGTGCAGAGAAGGAACCTCCATTTTCCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCGAAGCCCCA-GTGCAGGACCTGCGTGCGGCAAGGCGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTCACATAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCGAAGCTGAGGCTGAGTCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106685889 303 - 115148730 GATTTTCTCTTC---------TCATACGTTTT-------------------------TCCAATAA--------ATTGG--ACGAAACTGATCTGCAGTAGCAAGCCTTGAGGGTCCCGCAAAATTGGCCTCGGCTTGGGATGCAGAGGAGGAATCTCCATTTTCCTGA------ATTGGATGAAGGAAGCCGTTATCTTTTGGAAAAATCGAAGCCCTA-GTGCAGGACCTGCGTGCGGCAAGGCATTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCGGGGCTGAGGCTGAGTCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86991119 308 +  95678458 GATTTTCTCTTC---------TCATACGTTTT-------------------------TCCAATAA--------ATTGG--ACAAAACTGATCTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCCTGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCAAGGCTGAAGCTGAGTCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87647782 308 -  96509753 GATTTTCTCTTC---------TCATACGTTTT-------------------------TCCAATAA--------ATTGG--ACAAAACTGATCTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCAAGGCTGAAGCTGAGTCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82474272 308 +  90941950 GATTTTCTCTTC---------TCATACGTTTT-------------------------TCCAATAA--------ATTGG--ACAAAACTGATCTGCAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTGCTGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCCA-GTGCAGGATCTGCGTGTGGCAAGGAGTTGCTTTCTGCA-GAATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACATAGAGCTTCTCTAACCACACATCAGCTAAGGGG------CCAAGGCTGAAGCTGAGTCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24735264 268 +  33263144 GATTTTCTCTTC---------TCATACGTTAT-------------------------TCCAATAA--------ATTGG--ACAAAACTGATCTACAGTAGCAAGCCTTGAGGGTCTCACAAAATTGGCCTTGGCTTGGGGTACGGAGGAGGAACCTCCATTTTTCTGAAACAGTATTGGATGAAGGAAGCCG-TATCTTTTGGAAAAATCAAAGCCCC------------------------------------------AATCACACAAACTTTCCTGCATGAAGTTCAGAAGCCTTGACACAGAGCTTCTCTAACCACACACCAGCTAAGGGG------CCAAGGCTGAAGCTGAGTCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1980773 309 -   2117846 GCTTTTTCCTTC---------TCATACGTTTT-------------------------TCCAATAA--------ATGGA--ATGAAACTGATCTGCAGTTGCAGGCCCTAAGGGTCCCACAAAATTGGCCTGGGGTTGGGGT---GAAGAGGAAACTCCATTTTTCTGAG--AGTATTGGATGAAGGAAGCCC-TATCTTTTGGAAAAATCAAAGTCCTA-ATGCAGGACCTTGGTGCGGCAACGCATTGCTTTCTGCA-GAACCACAGAAACCTTCCTGCATGAAATTCAGAAAGTTTGACATAGAGCTTCTTTAACCACACACCAGCTAAGGGGCTGAGACTGAGGCTGAGGCTGAGTCA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82843313 277 + 104043685 catcatctctctaggccTTGATCTTACTTTTT-------------------------TCCAACAA--------ATAGGCAAAGAGAAAGAAGT-TAGTAGTAGACAT--AGGTCCTCACA------GTCTTAGATTAGAATGAGAAAAAGAAACCTCCATTTTC---------TGTTAATAGAAGATAA----TGTCACCCAGAAAATGTAAAGTTCTC-ACACAGGACTCCAG---GACAAGATAATACTTCCTCAATGAATCCTATAGACCTTCGTG--TGAAGT-------------------GCTTTTCTAGACACAAGCTAGTTCCGGGG----ACCCAGGGTTTAGGATGAtgta
i mm10.chr15                I 117 I 524
s canFam3.chr10              46123832 252 -  69331447 TATTTTCCTTCA---------CAGAGCTTCTT-------------------------TTCAATAAATGAGAAGATGGG--AAGAAATTGGCCTGTAGTTGGCAGTCTTCCGGGTCCTACAAAATTGGCCTTGGCAAGCGGT--AGAGGAG-AAGTTCCATTTTCCT--AACAATATGGAATAAAGGAAGCTG-TACGTCCTGGAAAATTCAAGCTCTCGCGTGCACGA-CTGTGTGGCCCAAGGTGTCACTTTCTGCT------------------CTG-ACGAAG--------------------GCTCCCC--------AACCTGTGAAGGGA------GCAGGGC-------------
i canFam3.chr10             C 0 C 0

a score=236813.000000
s hg38.chr22_GL383582v2_alt    113100 79 +    162811 CCCTGCAAGTTCCCTGACAGGAGTTTAACTTCACATTTCAACGGGTTTTCCAGTAGAGACTCAAGATATTTGTTGAATT
s panTro4.chr22              40938212 79 +  49737984 CCCTGCAAGTTCCCTGACAGCAGTTTAACTTCAGATTTCAACTGGTTTTCCAGTAGAGACTCAAGATATTTGTTGAATT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37478477 74 +  46535552 CCCTGCAAGTTCCCTGACAGCAGTTTAACTTCAGATTTCAACTGGTTTTCCAGTAGAGACTCAAGATATTTG-----TT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106686192 77 - 115148730 CCCTGCAAGTTCCCTGACAGCAGTTTAACTTCAGATTTCAACTGCTTTTCCAGT--AGACTCAAGATATTTGTTGAATT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86991427 78 +  95678458 CCCTGCAAGTTCCCTGACAGCAGCTTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT
i rheMac3.chr10             C 0 I 336
s macFas5.chr10              87648090 78 -  96509753 CCCTGCAAGTTCCCTGACAGCAGCTTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT
i macFas5.chr10             C 0 I 334
s papAnu2.chr10              82474580 78 +  90941950 CCCTGCAAGTTCCCTGACAGCAGCTTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT
i papAnu2.chr10             C 0 I 323
s chlSab2.chr19              24735532 78 +  33263144 CCCTGCAAGTTCCCTGACAGCAGTTTAACTTCAGATTTCAACTGGTTTTCCAGCAGAGACTC-AGAAAGTTGTTGAATT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1981082 78 -   2117846 CCCTCAAAGTTCCCTGATAGCAGTTTAACTTCACATTTCAACTGGTTTTCCATTAGAGACTC-AGGTATTTGTTGAATT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46124084 64 -  69331447 ------------CCTCACAGCATTCTAACTTCAGATTTGTATCAGGTTTCTAGCAAGAACTC---ATATTTGTTGAATC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82843590 524 + 104043685 I

a score=985178.000000
s hg38.chr22_GL383582v2_alt    113179 324 +    162811  
s panTro4.chr22              40938291 319 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37478551 323 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106686269 319 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86991841 319 +  95678458  
i rheMac3.chr10             I 336 C 0
s macFas5.chr10              87648502 319 -  96509753  
i macFas5.chr10             I 334 C 0
s papAnu2.chr10              82474981 319 +  90941950  
i papAnu2.chr10             I 323 C 0
s chlSab2.chr19              24735610 319 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1981160 328 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46124148 496 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82843590 524 + 104043685 I

a score=632371.000000
s hg38.chr22_GL383582v2_alt    113503 202 +    162811 cagccT------------TGG---------CCAAAGAATCGTG------TACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCTA-CCTCTAGAGAG----------------AAAAAAAAAGTCAAGAAATAAATCGTAGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCACTTG
s panTro4.chr22              40938610 200 +  49737984 cagccT------------TGG---------CCAAAGAATCGTG------TACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCTA-CCTCTAGAGA------------------AAAAAAAAGTCAAGAAATAAATCATAGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCACTTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37478874 205 +  46535552 cagcCT------------TGG---------CCAAAGAATCGTG------TACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCAAGTGTAATGCTCCCCA-CATCATCC-CCCCA-CCTTTAAAGAGAAAAA-----------AAAAAAAAAGTCAAGAAATAAATCATAGTAAAATCTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTA--ATATGCATTAACATTCAAAACTGAAAATTTCACTTG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106686588 204 - 115148730 cagccT------------TGG---------CCAAAGAATCGTG------TACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCAAGTGTAATGCTCCCCACCATCATCCTCCCCA-CCTCTAAAGAG----------------AAAAAAAAAGTCAAGAAATAAATCATAGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCACTTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86992160 202 +  95678458 cagGCT------------TGGCA-TTT---CCAAAGAATCGTG------CACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA-CCTCTAAAAAG--------------------AAAAAATCAATAAATAAATCATAGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCACTTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87648821 202 -  96509753 cagGCT------------TGGCA-TTT---CCAAAGAATCGTG------CACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCA-CCTCTAAAAAG--------------------AAAAAATCAATAAATAAATCATAGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCACTTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82475300 203 +  90941950 cagcct------------tggCA-TTT---CCAAAGAATCGTG------CACT-------------------------------------------CcttataaattttactttaaaatcatgTGTAATGCTCCCCA-CATCATC--CCCca-cctctaaaaag-------------------aaaaaaatcaataaataaatcatagtaAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----gtaatatatgcaataaaattcaaaactgaaAATTTCACTTG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24735929 204 +  33263144 cagccT------------TGGCA-TTT---CCAAAGAATCGTG------CACT-------------------------------------------CCTTATAAATTTTACTTTAAAATCATGTGTAATGCTCCCCA-CATCATC--CCCCACCCTCTAAaaag-------------------aaaaaaatcaataaataaatCATAGTAAAATTTGAGTCCTTCAATTTGTCATGATTTATTCTGTAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCACTTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1981488 223 -   2117846 cagATT------------TGGCA-TTT---TCAAAGAATCATG------TACT-------------------------------------------TCTTATAAACTTTACTTTAAAATCAAGTGTAATGCTGCCCA-CATCGTCC-CCTCA-ACTCTAAAAAGGaaaacaaaacaaaacaaaaaaaaaATCAAGAAATAAATCATAGAAAAATTTGAGTCCTTCTATTTGTCATGATTTATTCTATAAG----GTAATATATGCAATAAAATTCAAAACTGAAAATTTCATTTA
i calJac3.chrUn_GL286373    C 0 I 504
s mm10.chr15                 82844114 201 + 104043685 ------------------TAGCATTTT---CCAGAAAGTACTACTACTCTATT-------------------------------------------TCTTCTAAGTTTTACTTTTAAATCTGTTATAATGTGCCTC--TAACATC--TTTTA------AAAAAA-------------------AAAAAATTCAGGAAACAGGCTGCAGGAAACATATAGTTCTTCAGTTTGTCATAA-CTGTTCTATAAGattaataatatattcaataaaattaaaaaCTGAGAAGTTCATCTC
i mm10.chr15                I 524 I 7
s canFam3.chr10              46124644 249 -  69331447 cagcccagcatgaactcatgagacctcagacccagagatcatg------acctgagctgaaatcaagagtcagacttgactgagtcacccaggtgccccTGTAAGTTTTATTTTAATATCAGGTGTAAAGTTTCTCT-CATGAGCC-TTCTA-TCCCTAAAAGA------------------------AATGAAAAAACAGACTGTAGGAAAA---------CTCAATTTATCACAATTTACCCTGTAGC----ATAATAGAAGCAATAAAATTCTAAATTGCAAATTTTATGCT
i canFam3.chr10             C 0 C 0

a score=1900309.000000
s hg38.chr22_GL383582v2_alt    113705 605 +    162811  
s panTro4.chr22              40938810 617 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37479079 621 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106686792 619 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86992362 614 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87649023 614 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82475503 614 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24736133 617 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1982215 624 -   2117846  
i calJac3.chrUn_GL286373    I 504 C 0
s mm10.chr15                 82844322 595 + 104043685  
i mm10.chr15                I 7 I 943
s canFam3.chr10              46124893 643 -  69331447  
i canFam3.chr10             C 0 C 0

a score=308434.000000
s hg38.chr22_GL383582v2_alt    114310 87 +    162811 ACAATTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT
s panTro4.chr22              40939427 87 +  49737984 ACAATTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37479700 87 +  46535552 ACAATTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106687411 87 - 115148730 ACAATTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGGGGGAAGTA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86992976 87 +  95678458 ACCACTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87649637 87 -  96509753 ACCACTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAAACTTGTATTAAAAAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82476117 87 +  90941950 ACCACttaaagtaaatttaagaaaGATATGAGTCTGTTAGATGTGGGAAATA--AATAATTATCCATTATTTAaacttgtattaaaaat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24736750 87 +  33263144 ACCACTTAAAGTAAATTTAAGAAAGATGTGAGTCTGTTAGATGTGAGAAATA--AATAATTATACATTATTTAAACTTGTATTAAAAAT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1982839 89 -   2117846 acaatttaaagtaaatttaagaaagatgtgagtctgttagatgggggaagtattaataattatctgttatttaaaattgtattaaaaat
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82845860 84 + 104043685 ATGATTCAAAGTAAATTAAACAAAATTCTGA-TCGGTTAGAC--AGAATGTG--CTAAATTATCCATTACTTGAACCTGTGTTAAGAAT
i mm10.chr15                I 943 I 2222
s canFam3.chr10              46125536 56 -  69331447 -AAGTTTAAAGTAAA---------------------TTAGAGATGGGGGACA--GAT---------CTATTTAAACCTGTATTAAAAAT
i canFam3.chr10             C 0 C 0

a score=380767.000000
s hg38.chr22_GL383582v2_alt    114397 130 +    162811 AAGCCCCTAAACTggccaggtgcagtggctca----------caccta---taatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcaaggccagcttggccaacatcctcaaatccc--------gtctct
s panTro4.chr22              40939514 130 +  49737984 AAGCCCCTAAACTggccaggtgcagtggctca----------caccta---taatcccag----tactttgggaggccgaggagggtggattcctcaaggtcaggagttcaaggccagcttggccaacatcctcaaatccc--------gtctct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37479787 130 +  46535552 AAGCCCCTAAATTggccaggtgcagtggctca----------cacctg---taatcccag----tactttgggaggccaaggagggtggattccttaaggtcaggagttcgaggccagcttggccaacatcgtcaaagccc--------gtcttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106687498 130 - 115148730 AGGCCCCTAAATTggccaggtgcagtggctca----------cacctg---taatcccag----tactttgggaggccaaggagggtggattccttaaggtcaggagttcgaggccagcttggccaacatcgtcaaatccc--------aactct
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86993063 130 +  95678458 AAACCCCTAAATCggccaggtgcggtggctca----------cacctg---taatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------gtctct
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87649724 130 -  96509753 AAACCCCTAAATCggccaggtgcggtggctca----------cacctg---taatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcgaggccagagtggtcaacatcgtcaaatccc--------gtctct
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82476204 130 +  90941950 aaacccctaaatcggccaggtgcggtggctca----------cacctg---taatcccag----tactttgggaggccgaggagggtggattccttaaggtcaggagttcgaggccagagTGGTCAACATCGtcaaatccc--------gtctct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24736837 130 +  33263144 AAACCCCTAAATCggccaggtgcggtagctca----------cacctg---taatcccag----tactttgggaggccgaggagggtggattcctcaaggtcaggagttcgaggccagagtggttaacatcgtcaaatccc--------gtctct
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1982928 129 -   2117846 aaa-ccctacattggccaggcatggtggctca----------tgcctg---taatcccag----cactttgggaggctaaggagggtggattccttaaggtcaggagttcgaggccagattggccaaaaaggtcaaacctc--------atttct
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46125592 146 -  69331447 AAGCTTTTAggggcacctgg----gtggctaagtcagttaaccatctgccttcagctcaggtcatgatcttggggtcctgggactgag-----ccccacatcaggctctccaggggagtctgcttttccttctcaactctccttctgcagtctct
i canFam3.chr10             C 0 I 262
e mm10.chr15                 82845944 2222 + 104043685 I

a score=539644.000000
s hg38.chr22_GL383582v2_alt    114527 188 +    162811 actaaaaatacaaaaattagctgggtgtggtggcacgcacctgtaattccagctactggggaggctgagacaggagaatcacttgaatacaggaggcggaggttgccgtgagccgagatcatgccactgcactccagcctggacaacagagtgagaccctgtctc-aaaaaat-------------caaggaaa---aaaaa------------CCC
s panTro4.chr22              40939644 189 +  49737984 actaaaaatacaaaaattagctgggtgtggtggcacgcacctgtaatcccagctactggggaggctgagacaggagaatcacttgaatacaggaggcggaggttgcagtgagccgagatcatgccactgcactccagcctggacaacagagtgagaccctgtctc-aaaaaat-------------caaggaaa---aaaaa-----------aCCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37479917 190 +  46535552 actaaaactacaaaaattagctgggtgtggtggcatgcacctgtaatcccagctactggggaggctgagacaggagaatcacctgaatacaggaggtggaggttgcagtgagctgagatcacgccactgcactccagcctggacgacagagtgagaccctgtctcaaaaaaat-------------caaggaaa---aaaaa-----------aCCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106687628 200 - 115148730 actaaaaatacgaaaattagctgggtgtggtggcacgcatctgtaatcccagctactggggaggctgagacaggagaatcacttgaatacaggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctggacgacagagtgagaccctgtctc-aaaaaac-------------caagaaaa---aaaaaaacagaacaaaaCCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86993193 196 +  95678458 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-ataaaataaatt--------taagaaaa---acaaa---------aaaCCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87649854 196 -  96509753 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-ataaaataaatt--------taagaaaa---acaaa---------aaaCCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82476334 204 +  90941950 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggctgaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacgccactgcactccagcctggatgacagagtgagaccctgtctc-aaaaaaaaaaataaaaaaaaaaagaaaa---acaaa---------aaaccc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24736967 196 +  33263144 actaaaaatacaaaaattagctgggtgtggtggcacacacctgtaatctcagctactggggaggccaaggcaggagaatcacttgaatacgggaggcagaggttacagtgagccaagatcacaccactgcactccagcctggatgacagagtgagaccctgtctc-aaaaaataaatt--------taagaaaa---acaaa---------aaaCCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1983057 197 -   2117846 actaaaaatacaaaaattagctgggcgtggtggcacacacctgtaatcccagctattcgggaggctgaggtgggagaatcgcttgaacacaggaggtagaagtcgtagtgagtcgagatcacaccactgtactccagactggatgacagagttagaccctgtctc-aaaaatt-------------aaataaaatttaaaaa------actaaaccc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82845944 2222 + 104043685 I
e canFam3.chr10              46125738 262 -  69331447 I

a score=36267.000000
s hg38.chr22_GL383582v2_alt    114715 14 +    162811 TAAATATAATCTTT
s panTro4.chr22              40939833 14 +  49737984 TAAATATAATCTTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480107  8 +  46535552 ------TAATCTTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106687828 14 - 115148730 TAAATATAATCTTT
i nomLeu3.chr7b             C 0 I 1
s rheMac3.chr10              86993389  8 +  95678458 ------TAATCTTT
i rheMac3.chr10             C 0 I 329
s macFas5.chr10              87650050  8 -  96509753 ------TAATCTTT
i macFas5.chr10             C 0 I 333
s papAnu2.chr10              82476538 14 +  90941950 taaatataatcttt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24737163 14 +  33263144 TAAATATAATCTTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1983254 14 -   2117846 taaatgtaatcttt
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126000 14 -  69331447 taaataaaatctta
i canFam3.chr10             I 262 C 0
e mm10.chr15                 82845944 2222 + 104043685 I

a score=4095.000000
s hg38.chr22_GL383582v2_alt    114729 1 +    162811 A
s panTro4.chr22              40939847 1 +  49737984 A
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480115 1 +  46535552 A
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106687843 1 - 115148730 A
i nomLeu3.chr7b             I 1 C 0
s rheMac3.chr10              86993726 1 +  95678458 a
i rheMac3.chr10             I 329 C 0
s macFas5.chr10              87650391 1 -  96509753 a
i macFas5.chr10             I 333 C 0
s papAnu2.chr10              82476552 1 +  90941950 a
i papAnu2.chr10             C 0 I 342
s chlSab2.chr19              24737177 1 +  33263144 A
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1983268 1 -   2117846 a
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126014 1 -  69331447 a
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82845944 2222 + 104043685 I

a score=2255.000000
s hg38.chr22_GL383582v2_alt    114730 2 +    162811 -AT
s panTro4.chr22              40939848 2 +  49737984 -AT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480116 2 +  46535552 -AC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106687844 2 - 115148730 -AT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86993727 2 +  95678458 -aT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87650392 2 -  96509753 -AT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82476895 2 +  90941950 -at
i papAnu2.chr10             I 342 C 0
s chlSab2.chr19              24737178 2 +  33263144 -AT
i chlSab2.chr19             C 0 I 350
s calJac3.chrUn_GL286373      1983269 2 -   2117846 -at
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126015 2 -  69331447 aa-
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82845944 2222 + 104043685 I

a score=865610.000000
s hg38.chr22_GL383582v2_alt    114732 301 +    162811 ---ATATTGATTCAGAAATTTAAAGAAAATTggccaggcacagtggctcagacctgtaatcccagcactttgggtggctgaggcaggtggatcacttgagatcaggagtttgagatcagcc---------tggccaacat----ggtgaaaccctgtctctattaaaaatacaaaaattagccaggtgtggtggtgcatgactgcagtcccagttacttgggaggctgaggcaggagagt------cacttgaacccacgaggaggtggttgcagtgagccaagattgtgccactgcactccag-cctggcaacagag----------caagac
s panTro4.chr22              40939850 301 +  49737984 ---ATATTGATTCAGAAATTTAAAGAAAATTggccaggcacagtggctcaggcccgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcaggagtttgagatcagcc---------tggccaacat----ggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgactgcagtcccagttactcgggaggctgaggcaggagagt------cacttgaacccacgaggaggtggctgcagtgagccaagattgtgccactgcactccag-cctggcaacagag----------caagac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480118 301 +  46535552 ---ATATTGATTCAGAAATTTAAAGAAAATTggccaggcacggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacttgagatcagaagttcgagatcagcc---------tgcccaacat----ggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtacatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaacccacgaggagggggttgcagtaagccgaaattgtgccactacactccag-cctggcaacagag----------caagac
i ponAbe2.chr22             C 0 I 159
s nomLeu3.chr7b             106687846 300 - 115148730 ---ATACTGATTCAGAAATTTAAAG-AAATTggccaggcacgatggctcacgcctgtaatcccagcactttgggaggctgaagcaggtggatcacttgagatcaggagtttgagatcagcc---------tgcccaacat----ggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggtacatgcctacagtcccagttacttgggaggctgaggcaggagagt------cacttgaacccacgaggaggtggttgcagtgagccaagattgcgccactgcactccag-cctggcaacagag----------caagac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86993729 301 +  95678458 ---ATATTGATTCAGAAATTTAAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttcgagatcagcc---------tgcccaacat----ggtgaaaccccatctctactaaaaatacaaaaattagccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggaggtggctacagtgagctgagatcgcaccactgcactccag-cctggcaacagag----------caagac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87650394 301 -  96509753 ---ATATTGATTCAGAAATTTAAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggtgttcgagatcagcc---------tgcccaacat----ggtgaaaccccatctctactaaaaatacaaaaattggccagctatggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggaggtggctacagtgagctgagatcgcaccactgcactccag-cctggcaacagag----------caagac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82476897 301 +  90941950 ---atattgattcagaaatttaaagaaaattggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttcgagatcagcc---------tgcccaacat----ggtgaaaccccatctctactaaaaatacaaaaattagccagctatggtggtgtatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacGAGGAggtggctacagtgagctgagatcgcaccactgcactccag-cctggcaacagag----------aaagac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24737530 301 +  33263144 ---ATATTGATTCAGAAATTTAAAGAAAATTggccaggcacggcggctcacgcctgtaatcccaacactttgggaggctgaggcaggcggatcacttgagatcaggagttggagatcagtc---------tgaccaacat----ggtgaaaccctatctctactaaaaatacaaaaattagccagctgtggtggtgcatgcctgcagtcccagttacttgggagactgaggcaggagagt------cacttgaactcacgaggaggtggctacagtgagctgagatcgcaccattgcactccag-cctggcaacagag----------caagac
i chlSab2.chr19             I 350 C 0
s calJac3.chrUn_GL286373      1983271 289 -   2117846 ---atactgattcaa------aaagacaatcggctgggcatcgtggctcacccctgtaatcctagcactttgggaggctcaggccggtgggtcacatgagatcaggagtttgaggccagcc---------tggccaatat----ggtgaaacctcttctctactaaaaatacacaaattagccgggtgtggtggtgcatgcctgcagtcccagtta----ggaggctgaggcaggaaaat------cacttaaacccacaagga---ggctatagtgagctgagattgtgtcactgtactctagtcttggcaagagag----------caagac
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126017 240 -  69331447 aaaataaataaataaaatcttaaaaaaaaaaaatca-------------attcctg--atctcagc---tcgggt-------------------cttgatctcagggtcgtgagttcaagccccatgctgtgctccacactgggtgtggaac-------ctaatagaaa-ataaaaATGAAC----TTTAGGGGCAcctggct--------------------ggctcagtcagaacagcatgtggctcttgatctca------------------gggtcatgatt------ttgagccccac-gttgggcacAGAGATCAAATAAATAAAAC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82845944 2222 + 104043685 I

a score=329123.000000
s hg38.chr22_GL383582v2_alt    115033 159 +    162811 tcATCTCaaaataaaaa----taaaaatag----------------aaaataaaaatTAACCTAAAACCAG----TTAACATATACTGTCAGGTAAAA-AAAAAAGATTAAAAGTTTCCCAAGGGGGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAGACTCCCC
s panTro4.chr22              40940151 157 +  49737984 tcatctcaaaataaaaa----taaaaatag----------------aaaataaaaatTAACCTAAAACCAG----TTAACATATACTCTCAGGTAAAA-AAAA--GATTAAAAGTTTCCCAAGAGGGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAGACTCCCC
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106688146 157 - 115148730 tcATCTCaaaataaaaa----taaaaatag----------------aaaataaaaatTAACCTAAAACCAG----TTAACATATATTGTCAGGTAAAA-AAAA--GATTAAAAATTTCCCAAAGGAGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAACAAGCAAAGACTCCCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86994030 151 +  95678458 tcatctcaaaataaaaa----taaaaatag----------------aaaataaaaatTAACCTAAAACGAG----TTAACATACACTGTCAGGTAAAA-AAAAAAGATTAAAAATTTCCCAAGGGAGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAA--------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87650695 151 -  96509753 tcATCTCaaaataaaaa----taaaaatag----------------aaaataaaaatTAACCTAAAACGAG----TTAACATACACTGTCAGGTAAAA-AAAAAAGATTAAAAATTTCCCAAGGGAGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAA--------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82477198 151 +  90941950 tcatctcaaaataaaaa----taaaaatag----------------aaaataaaaattaacctaaaacgag----ttaacatacactgtcaggtaaaa-aaaaaagattaaaaatttccCAAGGGAGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAA--------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24737831 143 +  33263144 tcatctc------aaaa----taaaaatag----------------aaaataaaaaTTAACCTAAAACGAG----TTAACATACACTGTCAGGT--AA-AAAAAAGATTAAAAATTTCCCAAGGGAGGTTGGAAAA----ATTTGGGAGGGGCACCTTC--------------------TATGAGAGGGGAATAAGCAAA--------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1983560 167 -   2117846 ctgtcactaaataaaaa----caaaaagaa----------------aaaagaaaaattaacctaaaaccagttctttaacatacactgtcagataaaacaaaaaagattaagaattttccaaggg-gcttggaaagatatatttgagaggggCACCTTC--------------------TATGAGAGGGGAACAAGCAAAGACTCCCC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126257 165 -  69331447 ----TTGAAAAAAAAAAGCTTTAAACATAATCTTTAATATACTGATCAAAAGAGAACTGACCCAAATCCAG----TTAACATATAC-------------AAA-------------TTCCCAAGGAGGCTGTTAAGA----ATCTGGAAGGGGAGCGGTCAGCCCAGGTGGTGGTAGAGGGAAGGGAAGGGAACAAAACAGGCC-----
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82845944 2222 + 104043685 I
e ponAbe2.chr22              37480419 159 +  46535552 I

a score=117211.000000
s hg38.chr22_GL383582v2_alt    115192 43 +    162811 GACTCCCCCACTAGTAGGGCTATCCAGCCTCAAGGGATCCATG
s panTro4.chr22              40940308 35 +  49737984 --------CACTAGTAGGGCTATGCAGCCTCAAGGGATCCATG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480578 43 +  46535552 GACTCCCCCACTAGTAGGGCTATGCAGCCTCAAGGGATCCATG
i ponAbe2.chr22             I 159 C 0
s nomLeu3.chr7b             106688303 35 - 115148730 --------CACTAGTAGGACTATGCAGCCTCAAGGGATCCATG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86994181 43 +  95678458 GCCTCTCCCACTAGTAGGGCTATGCAGCCTCAAGGGATCCATG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87650846 43 -  96509753 GCCTCTCCCACTAGTAGGGCTATGCAGCCTCAAGGGATCCATG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82477349 43 +  90941950 GCCTCTCCCACTAGTAGGGCTATGCAGCCTCAAGGGATCCATG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24737974 43 +  33263144 GCCTCTCCCACTAGTAGGGCTATGCAGCCTCAAGGGATCCATG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1983727 34 -   2117846 --------TAGTAGTAGGG-TGTGCAGCCTCAAGGGATCCATG
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126422 36 -  69331447 AGCTCTCCTGAGAGCAG---TGTACA----CTAGAGATCCCTG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82845944 2222 + 104043685 I

a score=794862.000000
s hg38.chr22_GL383582v2_alt    115235 263 +    162811 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATATCCATACCCATTCAGAGGCAATTACCTCTGTAATATCATTCATGTCAGAGGTCATTGTGAT----TCTCATACACAATTATACCAAGG----CAAACAGTGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTCACAAGTCCCACACTTGTGggaagggaaaaaggaag
s panTro4.chr22              40940343 263 +  49737984 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATATCCATACCCATTCAGAGGCAATTACCTCTGTAATATCATTCATGTCAGAGGTCATTGTGAT----TCTCATACACAATTATACCAAGG----CAAACAGTGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTCACAAGTCCCACACTTGTGGGAAGGGAAAAAGGAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480621 261 +  46535552 GCCACCAGAT--CTATCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGACTTGTACATACCAAGTT------ATATCCATATCCGTTCAGAAGCAATTACCTCTGTAATATCATTCACGTCAGAGGTCACTGTGAT----TCTCATACACAATTATACCAAGG----CAAACAGGGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA---AGATTCACAAGTCCCACACTTGTGGGAAGGGAAAAAAGAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106688338 263 - 115148730 GCCACCAGAT--CTACCTTCTGTCACATCCCTGCAC-------GCCTTGGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTG------ATATCCATACCCGTTCAGAGGCAATTACCTCTGTAATATCATTCATGTCAGAGGTCATTGTGAT----TCTCATCCACAATTATACCAAGG----CAAACAGGGGT--CAATGTTGGACAGAAGCAAAGGGGACTTGTGCTGAAATGA-ATAGATTCACAAGTCCCACACTTGTGGGAAGGGAAAAAGGAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86994224 266 +  95678458 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAATTACCTCTGTAATATCATTCATGTCAGAGGTCATTCTGAT----TCTCATCCACAATTATACCAAGGCAAACAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTCCCAAGTCCCACACTTGTGGGAAGGGAAAAAGGAAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87650889 266 -  96509753 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAATTACCTCTGTAATATCATTCATGTCAGAGGTCATTCTGAT----TCTCATCCACAATTATACCAAGGCAAACAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTCCCAAGTCCCACACTTGTGGGAAGGGAAAAAGGAAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82477392 266 +  90941950 GCCACCAGAT--CCACCTTCTGTCACATCCCTACAT-------GCCTTCGCATTCCTTAATGTCTCAAAGGTGATTTGTACATACCAAGTT------ATACCCATACCCGTTCAGAGGCAATTACCTCTGTAATATCATTCATGTCAGAGGTCATTCTGAT----TCTCATCCACAATTATACCAAGGCAAACAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTCCCAAGTCCCACACTTGcgggaagggaaaaaggaag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24738017 220 +  33263144 GCCACCAGAT--CCACCTTCTGTCACATCCCTGCAT-------GCCTTCGCATTCCTTAACGTCTCAAAGGTGATT----------------------------------------------------TGTAATATCATTCATGTCAGAGGTCATTCTGAT----TCTCATCCACAATTATACCAAGGCAAACAAACAGGGGT--CAATGCTGGACAGAAGCAAAGGGAAC-TGTGCAGAAATAA-ATAGATTCCCAAGTCCCACACTTGTGGGAAGGGAAAAAGGAAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1983761 273 -   2117846 GCCACCAGATCCCCACCTTCTGCCACATCCCTGCAG-------GCCTTCGCATTCTTCAGTGTCTCAAAGGTGATTTGTAAATACCAAGTTATACCCATACCCATACCCATTTAGAGGCAATTTTCTCTGTAATATCATTCATGTCAGGGGTCATTGTGAT----TCACATACACAATTATACCAAGGCAAACAAACAGGGGT--CAATGTTGGACAGAAGCTAAGGGGAC-TGCACTGAAATGA-AT-GATTCACAAGTGCCACACTTGTGGGAAGGGAAAAAGGAAG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82848166 257 + 104043685 GCAACCAGAT--CCTCATCTTCGACCGTGACTCCAA-------ATCCTCACATTCCTAAGCGTCTCAAGCACACTATATATAAATCAATTG------CAATGTACGCATCTTGAGAAGCAAAAATCTCTACAACA-CTTTCATGTCA--AGTCATTGCAG---------AATCATGTTTTTACCAATG----CATATAAGGTTTGTAAAGTTGAATTGAAGTAAAGGGAAC-AATACAGAAATGAGATAGACTCAGAGAAGCCACAATGAGAGAGGGAGAAAAGTGAAG
i mm10.chr15                I 2222 I 2899
s canFam3.chr10              46126458 213 -  69331447 ---------------TCTGCCACCACAACCCTGAACCTGAAAGGCCGTCACATTCCTAAACATATCAGACATGACTTTCATACAGCAAGTG---------------------------------CCTCTAACACACCACCTACATCAGA--TCAGAGGAATAGGCTCATATAAACAGTCAGACCAAGATAAATAAGCAGAGGT--CAAAGTCAGGCAAAACCAAAGAGGAC-TATTCAGAAATAA-ATGCACT---AAATCCCACACTCA-------------------
i canFam3.chr10             C 0 C 0

a score=1593517.000000
s hg38.chr22_GL383582v2_alt    115498 483 +    162811  
s panTro4.chr22              40940606 473 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37480882 479 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106688601 470 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86994490 470 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87651155 472 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82477658 468 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24738237 468 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1984034 464 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46126671 481 -  69331447  
i canFam3.chr10             C 0 I 1154
e mm10.chr15                 82848423 2899 + 104043685 I

a score=791253.000000
s hg38.chr22_GL383582v2_alt    115981 281 +    162811 tttagagattgaatcc--cactcagtcgcccaggctagagtgcagtggcaccatcttggctcactgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcctgtcaccatgtccagctaatttttgcatatttttagtagacacggggtttgaccatgttggccaggctggtcttgaactcctg--------------acctcaggcgatctgcccacctcggcctcccaaagtgctgggactacaggcgtgagccatcatg
s panTro4.chr22              40941079 281 +  49737984 tttggagattgaatcc--cactcagtcgcccaggctagagtgcagtggcacagtcttggctcactgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccaccatgtccagctaagttttgcatatttttagtagacacggggtttgaccatgttggccaggctggtcttgaactcctg--------------acctcaggcaatctgcccacctcggcctcccaaagtgctgggactacaggcgtgagccatcatg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37481361 281 +  46535552 tttggagatagaatct--cgctcagtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgtctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccaccatgcccagctaatttttgcatatttttagtagagacagggtttaaccatgttggccaggctggtcttgaactcctg--------------acctcaggcgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccatcgtg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689071 281 - 115148730 tttggagatagaatcc--cgctcagttgcccaggctagagtgcagtggcacaatcttggctctctgcaacctccgtctcctaggctcaagccattctcctgcctcagcctcctgagtagctgggattacaggtgcccgccaccatgcccagctaatttttgcatatttttagtagagacggggtttgaccacgttggccaggctcgtcttgacctcctg--------------acctcaggcgatccgcccacctcggcctcccaaagtgctgagattacaggcgtgagccatcgtg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86994960 261 +  95678458 ttttgagacggagtct--tgctctgtcgcccaggctaga--------------------ctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttatatatttttagtagagacggggtttgaccatgttggctaggctgatcttgaactcctg--------------acctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggtgtgagtcatcaca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87651627 281 -  96509753 ttttgagacggagtct--cgctctgtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagacggggtttgaccatgttggctaggctgatcttgaactcctg--------------acctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggtgtgagtcatcaca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82478126 281 +  90941950 ttctgagacagaatcc--cgctcagtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagctattctcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaatttttgtatatttttagtagagacggggtttgaccatgttggctaggctgatcttgaactcctg--------------acctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggcttgagtcatcACA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24738705 281 +  33263144 ttttgagacacaatcc--cgctcagtcgcccaggctagagtgcagtggcacaatcttggctcactgcaacctctgcctcctaggctcaagccattctcctgcctcagcctcccgagtagctgggattacaggtgtccaccaccatgcccaactaatttttgtatatttttagtagagacggggtttgaccatgttggctaggctgatcttgaactcctg--------------acctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggcgtgagtcatcaca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1984498 280 -   2117846 ----aagacagagtcccacactcagttgcctaagatggagtgcagtggtgcaattttggctcactgcaacctct--------ggctcaagccattctcctgtctcagcctcctgagtagctgggcttacaggcgaccaccaccatgcccggctaa-----gtattcttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgatcttatgtgacccacctcaggcaatcaacttgtcttagcctcccaaagtgctgggattacaggtgtgagccaccacg
i calJac3.chrUn_GL286373    C 0 I 143
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46127152 1154 -  69331447 I

a score=16006.000000
s hg38.chr22_GL383582v2_alt    116262 9 +    162811 ctcggccCA
s panTro4.chr22              40941360 9 +  49737984 cccggccCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37481642 9 +  46535552 ccttgccCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689352 9 - 115148730 cccggccCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86995221 9 +  95678458 ccgggccTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87651908 9 -  96509753 ctgggccTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82478407 9 +  90941950 CCCGGCCTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24738986 9 +  33263144 cctggccTA
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46127152 1154 -  69331447 I
e calJac3.chrUn_GL286373      1984778 143 -   2117846 I

a score=3276.000000
s hg38.chr22_GL383582v2_alt    116271 1 +    162811 A
s panTro4.chr22              40941369 1 +  49737984 A
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37481651 1 +  46535552 A
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689361 1 - 115148730 A
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86995230 1 +  95678458 A
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87651917 1 -  96509753 A
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82478416 1 +  90941950 A
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24738995 1 +  33263144 A
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46128306 1 -  69331447 A
i canFam3.chr10             I 1154 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e calJac3.chrUn_GL286373      1984778 143 -   2117846 I

a score=721301.000000
s hg38.chr22_GL383582v2_alt    116272 226 +    162811 GACCTGAATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTACTGATTATCAATTATTGCTATAGAACACCTAAAAGTTTACACAAAAAAACTGGGCTGAGATATGT---TAATAATAAATGTTGAAAT------AACGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAACAggctgggcgcagtgacccacacctgtaat
s panTro4.chr22              40941370 226 +  49737984 GACCTGAATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTATTGATTATCAATTATTGCTATAGAACACCTAAAAGTTTACACAAAAAAACTGGGCTGAGATATGT---TAATAATAAATGTTGAAAT------AACGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAACAggctgggcgcagtgacccacacctgtaat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37481652 221 +  46535552 GACCTGAATTGAGACACAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGATTACTGATTATCAATTATTGCCATAGAACACCTAAAAGTTTACACATAAAAACTGGGC-----TATGT---TAATAATAAATGTTGAAAT------AACGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAACGGgctgggcgcagtgacccacacctgtaat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689362 226 - 115148730 GACCTGAATTGAGACACAGGATCTAGAGATTTGCTGGGCAAGATTTAGC---CTGATTATTGATTATCAATTATTGCTATAGAACGCCTAAAAGTTTACACATAAAAACTGGGCTGAGATATGT---TAATAATAAATGTTGAAAT------AACGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAACAggctgggcgcagtgacccacacctgtaat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86995231 224 +  95678458 GACCTGGATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTTGATTATCAATTATTGCTATAGAATGCCTAAAAGTTTACACATAAAAACTGTGC-----TATGTTAATAATAGTAAATGTTGAAAT------AACGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAAAAggctgggcgcagtgacccacacctataat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87651918 224 -  96509753 GACCTGGATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTTGATTATCAATTATTGCTATAGAATGCCTAAAAGTTTACACATAAAAACTGTGC-----TATGTTAATAATAGTAAATGTTGAAAT------AACGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAAAAggctgggcacagtgacccacacctataat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82478417 218 +  90941950 GACCTGGATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTTGATTATCAATTATTGCTATAGAATGCCTAAAAGTTTACACATAAAAACTGTGC-----T------ATAATAGTAAATGTTGAAAT------AACGAAAACAC-TGTCAGATggtcacatacacacatgcacatcaaaaagcaataaaaaggctgggcgcagtgacccacacctgtaat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24738996 221 +  33263144 GACCTGGATTGAGACACAGGATCTAGAGATTTGCTGGGGAATATTTAGC---CTGATTGTTGATTATCAATTATTGCTATAGAATGCCTAAAAGTTTACACATAAAAACTGTGC-----TATGT---TAATAGTAAATGTTGAAAT------AATGAAAACAC-TGTCAGATGGTCACATACACATATGCACATCAAAAAGCAATAAAAAggctgggcacagtgacccacacctgtaat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1984921 229 -   2117846 GACCTGGATTGAGATGCAGGATCTAGAGATTTGCTGGGGAAGATTTAGC---CTGTTTACTGATTACCAATTATTGCTACAGAATGCCTAAAAGTTTACACATAAAAATTGTGCTGAA-TATGT------TAATAAATGTTGAAATTAAAAAAAAAAAAACACTTGTCAGAGGGTTGCATACACGTATGCACATCAAAACGTGATAAATAggctgggcgcagtgactcacacctataat
i calJac3.chrUn_GL286373    I 143 C 0
s canFam3.chr10              46128307 188 -  69331447 GACCTGTTTTGAGACACAGGATTTAGAGATCTGCTGAGTAGGAGTTAGCTTGCTGATTACTGGTTACCAATTACTGCTACAGAATGTTCAACAGTTTACACATAGAAGTTACTCTGACAGATATTAATAATATTCTATGTTGAAAT------AAAGAAAACAC-TGGCAGATGG--------------------------------------------GCAGGGACACAGACCTAAAAT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I

a score=309189.000000
s hg38.chr22_GL383582v2_alt    116498 105 +    162811 cccaacactc-taggaggtcaaggcagatggatgatctgaggtcaggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC
s panTro4.chr22              40941596 105 +  49737984 cccaacactc-taggaggtcaaggcagatggatgatctgaggtcaggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37481873 105 +  46535552 cccagcactc-tgggaagtcaaggcaggtggatgatgtgaggtcaggagttccagaccagcctggccaacatggtgaaaccccACAACAAAGTGAGATTCTGTCTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689588 105 - 115148730 cccaacactc-tgggaggtcaaggcaggtggatgatctgaggtcaggagttccagaccagcctggccaacatagtgaaaccGCACAACAAAGTGAGATTCTGTCTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86995455 105 +  95678458 cccgacactt-taggatttcacggcgggtggatgatcttaggtcaggagtttcagaccagcctggccaacacggtgaaactccgAAACAAAGTAAGATTCTGTCTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87652142 106 -  96509753 cccaacacttgtaggaggtcaaggcgggtggatgatctgaggtcaggagtttcagaccagcctggccaacacggtgaaactccgAAACAAAGTAAGATTCTGTCTC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82478635 105 +  90941950 cacaacactt-taggaggtcaaggcgggtggatgatctgaggtcaggagtttcagaccagcctggcaaacacggtgaaactccgcaacaaagtgagattctgtctc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24739217 105 +  33263144 cccaacactt-taggaggtcaaggcgggtggatgatctgaggtcaggagtttcagaccagcctggccaacatggtgaaactccgCAACAAAGTGAGATTCTGTCTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1985150 105 -   2117846 cccaacactt-tgggaggtaaaggctgatggatgatctgaggtcaggagctccagaccagcctggccaacatggtgaaaccccACAACAAAGCTAGATTTTGTCTC
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46128495   0 -  69331447 C

a score=763868.000000
s hg38.chr22_GL383582v2_alt    116603 241 +    162811 AAAAAACAAACA---ACAAAAAACCCACC-AAATACTGTGACTTTCCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGACAAGAGGATGATTAACGGATTATTTTGAGCGCTCAAATTTGACTAAAGAATTTTGTACTTGAGGGTCTTAAATGTTACATCCTCCTAGGATCTTTGCATTTTAAAATGTCATTGTGTATAAACTTCTTAGGGGAAGTGAATCTTCTACCTCAAACTTGGAGTTTC
s panTro4.chr22              40941701 241 +  49737984 AAAAAACAAACA---ACAAAAAACCCACC-AAATACTGTGACTTTCCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGACAAGAGGATGATTAACGGATTATTTTGAGCGCTCAAATTTGACTAAAGAATTTTGTACTTGAGGGTCTTAAATGTTACATCCTCCTAGGATCTTTGCATTTTAAAATGTCATTGCGTATAAACTTCTTAGGGGAAGTAAATCTTCTACCTCAAACTTGGAGTTTC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37481978 241 +  46535552 AAAAAACAAACA---ACAAAAAACCCACC-AAATACTGTGACTTTCCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGGCAAGAGGATGATTAATGGATTATTTTGAGTGCTCAAATTTGACTAAAGAATTTTGTACTTGAGGGTCTTAAATGTTACATCCTTCTAGGATCTTTGCATTTTAAAATGTCATTGTGTATAAACTTCTTAGGGGAAGTAAATCTTCTACCTCAAACTTGGAGTTTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689693 238 - 115148730 AAAAAACAAACA---ACAAAAAACCCACC-AAATACTGTGACTTTCCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGGCAAGAGGATGATTAACGGATTATTTTGAGTGCTCAAATTTGACTAAAGAATTTTGTACTTGAGGGTCTTATATGTTACATCCTCCCAGGATCTTTGCATTTTAAAATGTCATTGCATATAAACTTCTTAGGGGAAGTAAA---TCTACCTCACACTTGGAGTTTC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86995560 244 +  95678458 AAAACACAAACAACAACAAAAAACCCACC-AAATACTGTGACTTTCCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGGCAAGAGGACGATTAACGGATTATTTTGAGGGCTCAACTTTGACTAAAGAATTTTGTACTTTAGGGTCTTAAATATTACACCCTTCTAGGATCTTTGCATTTTAAAATGTCATTGCGTATAAACTTCTTAGGGGAAGTAAATCATCTACCTCAAACTTGGAGTTTC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87652248 244 -  96509753 AAAACACAAACAACAACAAAAAACCCACC-AAATACTGTGACTTTCCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGGCAAGAGGATGATTAACGGATTATTTTGAGGGCTCAACTTTGACTAAAGAATTTTGTACTTTAGGGTCTTAAATATTACACCCTTCTAGGATCTTTGCATTTTAAAATGTCATTGCGTATAAACTTCTTAGGGGAAGTAAATCATCTACCTCAAACTTGGAGTTTC
i macFas5.chr10             C 0 I 294
s papAnu2.chr10              82478740 244 +  90941950 aaaacacaaacaacaacaaaaaacccacc-aaatACTGTGACTTTCCAAGGAAAGCTGGGAAGCAAGAACTCAACTTTGGCAAGAGGATGATTAACGGATTATTTTGAGGGCTCAACTTTGACTAAAGAATTTTGTACTTTAGGGTCTTAAATATTACACCCTCCTAGgatctttgcattttaaaatgtcattgcgTATAAACTTCTTAGGGGAAGTAAATCTTCTACCTCAAACTTGGAGTTTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24739322 245 +  33263144 AAAACACAAACAACGACAAAAAAACCACCAAAATACTATGACTTTTCAAGGAAAGTTGGGAAGCAAGAACTCAACTTTGGCAAGAGGATGATTAACGGATTATTCTGAGGGCTCAACTTTGACTAAAGAATTTTGTACTTTAGGGTCTTAAATATTACACCCTCCTAGGATCTTTGCATTTTAAAATGTCATTGCGTATAAACTTCTTAGGGGAAGTAAATCTTCTACCTCAAACTTGGAGTTTC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1985255 222 -   2117846 AAAAAAATAACA---AAAAACACCCCACC-AAATACTGTGACTTTCCGAGGAAAGTTGGGAAGCAAG----------------TAAGACAATTAATGTATTGTTTTGAGTGCTCAGATATGACTACAGAATTTTGTACTTTAGGGTCTTAAATGTTACATCCTTCTAGGATTTTGGCATTTTAAAATGTCACTGCATATAAACTTCTTA---GAAGTAAATCTTCTACCTCAAACTTGGAGTTAA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46128495 205 -  69331447 AACAAATAAACAAAACAAAACAAACCACC-AAATA---------------------TGGCAGGCAGGCCACCAACTGGAGCAAGACGACGACTGACAGGTTATACAGAATACTCAGAATTGACTAAAGAATTTTGTACTTTAGGGTCTTAAATCTTATGTCCCTTTAAGACTTTCACATTGTAAAATGTCACCATGTCTAA-----------GAAGCCAA---TCTACTTCAAACCTGGGG----
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I

a score=30134.000000
s hg38.chr22_GL383582v2_alt    116844 12 +    162811 ----ACCGTGATGTTA
s panTro4.chr22              40941942 12 +  49737984 ----ACCGTGATGTTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37482219 12 +  46535552 ----ACAGTGATGTGA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689931 12 - 115148730 ----ACAGTGATGTTA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86995804 12 +  95678458 ----ACAGTGACGTTA
i rheMac3.chr10             C 0 I 285
s macFas5.chr10              87652786 12 -  96509753 ----ACAGTGACGTTA
i macFas5.chr10             I 294 C 0
s papAnu2.chr10              82478984 12 +  90941950 ----ACAGTGACGTTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24739567 12 +  33263144 ----ACAGTGACGTTA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1985477 12 -   2117846 ----ACAGTGATGTTA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46128700 11 -  69331447 ATCGGGAGTGA-----
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I

a score=3276.000000
s hg38.chr22_GL383582v2_alt    116856 1 +    162811 A
s panTro4.chr22              40941954 1 +  49737984 A
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37482231 1 +  46535552 A
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689943 1 - 115148730 A
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87652798 1 -  96509753 A
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82478996 1 +  90941950 A
i papAnu2.chr10             C 0 I 19
s chlSab2.chr19              24739579 1 +  33263144 A
i chlSab2.chr19             C 0 I 19
s calJac3.chrUn_GL286373      1985489 1 -   2117846 A
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46128711 1 -  69331447 A
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e rheMac3.chr10              86995816 285 +  95678458 I

a score=528979.000000
s hg38.chr22_GL383582v2_alt    116857 186 +    162811 --TAATGGAGACAGGGAAGGAGGCACAAAGAAAAGACCGTAATTGGGAGA-TAGGGGACATGATAAGAG--TAAAGGGCAAGCTCCTTGCATGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATATAATTTTT------ACTATAGTCTATGGGC---ACTTC-TTTTTGCCAGAAGGTTATAAAT
s panTro4.chr22              40941955 187 +  49737984 --TAATGGAGACAGGGAAGGAGGCACAAAGAAAAGACCATAATTGGGAGA-TAGGGGACATGATAAGAG--GAAAGGGCAAGCTCCCTGCATGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATATAATTTTT------ACTATAGTCTATGGGC---ACTTCCTTTTTGCCAGAAGGTTATAAAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37482232 184 +  46535552 --TAATGGAGAGAGGGAAGGCGGGAAAAAGAAAAGACCATAATTGGGGGA-TAGGGGACATGATAAGAG--GAAACAGCAAGCTCCTTGCATGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATACAATTTTT------ACTATAGTCTATGGGC---ACTTCCTTTTTGCCAGAAGGTTATA---
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106689944 184 - 115148730 --TAATGGAGAGAGGGAAGGAGGGAAAAAGAAAAGACCATAATTGGG-GA-TAGTGGACATGATAAGAGTTGAAAGGGCAAGCTCCTTGCATGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATATAATTTTT------ACTATAGTCTATGGGC---AC----TTTTTGCCAGAAGGTTATAAAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86996101 185 +  95678458 --TAATGGAGAGAGGGAAGGAGGGAAAAATAAAAGACCATAATTAGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATATAATTTTT------ACTATAGTCTAGGGGA---ACCTCCTTTTTGCCAGAAGGTTAAAAAT
i rheMac3.chr10             I 285 C 0
s macFas5.chr10              87652799 182 -  96509753 -----TGGAGAGAGGGAAGGAGGGAAAAATAAAAGACCATAATTAGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATATAATTTTT------ACTATAGTCTAGGGGA---ACCTCCTTTTTGCCAGAAGGTTAAAAAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82479016 185 +  90941950 --TaatggagagagggaaggagggaaaaataaaagaccatAATTGGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGCTCCTTGCGTGACtgaattaaaatgttctaatttcaaatatatat----ttcacattcaatataattttt------actaTAGTCTAGGGGA---ACCTCCTTTTTGCCAGAAGGTTAAAAAT
i papAnu2.chr10             I 19 C 0
s chlSab2.chr19              24739599 185 +  33263144 --TAATGGAGAGAGGGAAGGAGGGAAAAATAAAAGACCATAATTGGGGGATTAGGGGAC---ATAAGAA--GAAAGGGCAAGTTCCTTGCGTGACTGAATTAAAATGTTCTAATTTCAAATATATAT----TTCACATTCAATATAATTTTT------ACTATAGTCTAGGGGA---ACCTCCTTTGTGCCAGAAGGTTAAAAAT
i chlSab2.chr19             I 19 C 0
s calJac3.chrUn_GL286373      1985490 182 -   2117846 --TAATGGAGAGAGAGAAGGAGGGAAAAAGAAAAGACCATAATT-------TTGGGGGT----TGAGGG--CATGGGGCAAGCTCCTTGCGTGAGTGAATTAAAATGTTCTAATTTC-TATATATAT----TTCACATTTGATTTTTTTTTTTTTTTAACTATAGTCTACGGGC---ACTTCCTTTTTGCCAGACGGTTATAAAT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46128712 182 -  69331447 CGTGGTG--GATAGGAAAGGAGGTAAAACAAAACTCACGTGG---------TGGGGGAGGCTCTCAGAG--GGAAAGCCAAGCTCCTTGTGTGACTGAATTAGAATGTTCTAATCTAAAAAATATATAAGCTTCATATGAATTACATTTCTT------ACTAGAGTTTACAGTTTTGACTTCCTTTTTATCA----GTTATAAAT
i canFam3.chr10             C 0 I 136
e mm10.chr15                 82848423 2899 + 104043685 I

a score=989082.000000
s hg38.chr22_GL383582v2_alt    117043 323 +    162811 AATATGGTAGACT----------------------------------------ACTAAACATACAGTTGTACATCCATCTGATCCCTTCCCACGAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACACCATGAGCAATGGGAAGCTGGAAACATG-------------------------AGAGATGAAGTGAGTGACAGTGATTCTGTGCACTG------CAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGAGGAGCCCCCAGAAAGCCAGCCACTTTAGGGCACAGAGCTTGGG--------GAGGCCTCAGTAAGTGGGGGTGCAACATGGGGCTGAAAAATAGAGCATTAGCCCAAAGTTTCTAAGAGGAGTTAGATCCTTAACCCAGTTCAA
s panTro4.chr22              40942142 323 +  49737984 AATATGGTAGACT----------------------------------------ACTAAACATACAGTTGTACATCCATCTGATCCCTTCCCACGAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACACCATGAGCAATGGGAAGCTGGAAACATG-------------------------AGAGATGAAGTGAGTGACAGTGATGCTGTGCACTG------CAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGAGGAGCCCCCAGAAAGCCAGCCACTTTAGGGCACAGAGCTTGGG--------GGGGcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaACCCAGTTCAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37482416 323 +  46535552 AATATGGTACACT----------------------------------------ACTAAACATACAGTTGCACATCCATCTGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACAGCATGAGCAATGGGAAGCTGGAAATAGG-------------------------AGAGATAAAGTGAGTAACAGTGATTCTGTGTACTG------AAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGAGGAGCCACTAGAAAGCCAGTCACTTTATGGCACAGAGCTTGGG--------GAGGcctcagtaagtgggggtgcaacatggggctgaaaaataaagcattagcccaaagtttctaagaggagttagatccttaacccagttcaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106690128 323 - 115148730 AATATGGTAGACT----------------------------------------ACTAAACATACAGTTGTACATCCATCTGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACAGCATGAGCAATAGGAAGCTGGAAATAGG-------------------------AAAGATGAAATGAGTAACAGTGATTCTGCGCACTG------AAAGGA----------AGCAGACAGTAATG-----------ATGAATGCAGTGGAGGAGCTACTAGAAAGCCAGCCACTTTATggcacagagcttggt--------gaggcctcagtaagtgggggtgcagcatggggctgaaaaatacagcattagcccaaagtttctaagaggagttagatccttaacccagttcaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86996286 318 +  95678458 AATATGGTAGACT----------------------------------------ATGAAACATACAGTTGTACATCCATTTGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACAGCATGAGCAATGGGAAACTGGAAATAGG-------------------------AGAGATGAAGTGAGTAACAGTAATTCTGTGCACTG------AAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGAGGAGCCATTAGAAAGCCCGCCACTTTACAGCACAGAGCTTGGG--------GAGGcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagcggagttagatccttaa-----ttcAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87652981 318 -  96509753 AATATGGTAGACT----------------------------------------ATGAAACATACAGTTGTACATCCATTTGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACAGCATGAGCAATGGGAAACTGGAAATAGG-------------------------AGAGATGAAGTGAGTAACAGTAATTCTGTGCACTG------AAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGAGGAGCCATTAGAAAGCCCGCCACTTTACAGCACAGAGCTTGGG--------GAGGcctcagtaagtgggggtgcaacatggggctgaaaaatagagcattagcccaaagtttctaagcggagttagatccttaa-----ttcAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82479201 318 +  90941950 AATATGGTAGACT----------------------------------------ACGAAACATACAGTTGTACATCCATTTGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACAGCATGAGCAATGGGAAACTGGAAATAGG-------------------------AGAGATGAAGTGAGTAACAGTAATTCTGTGCACTG------AAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGGGGAGCCATTAGAAAGCCCGCCACTTTACGGCACAGAgcttggg--------gaggcctcagtaagTGGGGGTGCAACATGGGGCTGAAAAATAGAGCATTAGCCCAAAGTTTCTAAGAGGAGTTAGATCCTTAA-----TTCAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24739784 318 +  33263144 AATATGGTAGACT----------------------------------------ACGAAACATACAGTTGTACATCCATCTGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATGACAGCataagcaatgggaaactggaaatagg-------------------------agagatgaagtaagtaacagtaaTTCTGTGCACCG------AAAGGA----------AGCAGACAGTAATG-----------ATGAGTGCAGTGGAGGAGCCATTAGAAAGCCCGCCACTTTATGGCACAGAGCTTGGG--------GAGGcctcagtaagtgggggtgcaacatggtgctgaaaaatagagcattagcccaaagtttctaagaggagttagatccttaa-----ttcAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1985672 320 -   2117846 AATATGGTAGACT----------------------------------------ACTAAATATACAGTTGTACATC----TGATCCCTTCCCACAAAAAAGTGGATAAACTTGCAAGATAAACT--CATAACAGCACCAGGAATGGGACATTGGAAATAGG-------------------------AAAGATGAA--GAGTAAC--CGATTCTGTGCACTG------AAAGGA----------AGCAGACAGT-ATG-----------ATGAGTGCAGTGGAGGAGCCACTAGCCAGC--GCCACTTCATggcacagagcttgggcaggcacagatgcctcaagaagtgggggtgcaatatagggctgaaaaacagagcattaggccagagtttctaagaagagttagatccttaACTCAATCCAA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46129030 393 -  69331447 AGTATGataaattaattttaaatataaataCAAAAACTGTGATTAAATATCAGACTGAACATACATTTTTCCA--CATCTTTTCCCTTCCCACAAA------GATAGA-----AGGATAAACTTATATGAGGACACAGACAACGGGAAA--GGAAacacacacacacacacacacacacgcacacacacacacaACAGATGTCCCTATTTTCGGATGCTGGAAATCAAAAGAGGGTGCACCCAGCAGTCTGTAAGGCAGAGAGAGGAATGAGTGCAGTGGAGGGGCCACAAGAACATCAGCCACTGTGTGGCACAGAGCTGGGG--------AAGGCAC-----AGCCAGCTCAAAATGTGGGGCCAGTAACCAGGTCATTAGCTCAAAATT----ATATGAGGTAGATCCTTAACCCAATCCAA
i canFam3.chr10             I 136 I 61
e mm10.chr15                 82848423 2899 + 104043685 I

a score=1090744.000000
s hg38.chr22_GL383582v2_alt    117366 386 +    162811 CCAGGTAACTGTTCTCATCCactgaaaacaggcgggagattgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaaccctaccatcctcttctccacttggcttttaggacgctggcagccaagcttgcatctctagacaggaaatctcaagatttttctctgg-----aacaaa--aaaaaaaatgtttttttt--tcctctgggaaaactcaactcagaaaaaagacccat-at----gctggctggctgccttattattctacggagaggactacaggctagcaagcctggcccatact-gtaacagagagcttcaagtcattttttaaaacatctctttctctcttaaaaatataaatcaag------------------------------------------------------------------gctgggtgcagtggctcaagcc
s panTro4.chr22              40942465 384 +  49737984 CCAGGTAACTGTTCTCATCtactgaaaacaggcgggagattgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaaccctaccatcctcttctccacttggcttttaggacgctggcagccaagcttgcatctctagacaggaaatctcaagatttttctctgg-----aacaaa--aaaaaaa-tgtttttttt---cctctgggaaaactcaactcagaaaaaagacccat-at----gctggctggctgccttattattctacggagaggactacaggctagcaagcctggcccatact-gtaacacagagcttcaagccattttttaaaacatctctttctctcttaaaaatataaatcaag------------------------------------------------------------------gctgggtgcagtggctcaagcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37482739 388 +  46535552 ccaggtaactgtcctcATCtactggaaacaggcgggagactgtcaaagtccgcgcactgaat-----catgagcccatatccccacccacacaaccctaccatccccttctccacttggcttttaggatgctggcagccaagcttgcatctctagacaggcaatctcaagatttttctctggagcaaaacaaa--aaaaaaa-agtttttttt---cctctgggaaaactcaactcag--aaaagacctataat----gctggctggttgccttattattctacggagaggactacaggctagcaagcctggcccatact-gtaacacagagcttcaagccattttttaaaacatctctttctctcttaaaaatataaatcaag------------------------------------------------------------------gctgggcgcagtggctcatgcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106690451 394 - 115148730 ccaggtaactgtcctcATCtactgaaaacaggcgggagattgtcaaagtccgtgcactgaat-----gatgagcccatatccccacccacacaactctaccatccccgtctccacttggcttttaggatgctggcagccaagcttgcatctctagacaggaaatctcaagatttttctccggaacaaaacaaaacaaaaaaa-tgtttttttttttcctctgggaaaactcaactcagagaaaagacctat-at----gctggctggctgccttattattctacggagaggactacagactagcaagcctggcccatact-gtaacacagagcttcaagccattttttaaaacatctctttctctcttaaaaatttaaatcaag------------------------------------------------------------------gctgggcgcagtggctcaagcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86996604 388 +  95678458 CCAGGTAACTGTCCTCATCtactaaaaacaggtgggagactgtcaaagtccacacactgaat-----ggtaagcccatatccccacccacacaacccta-cattcccttctccacttggcttttaggatgctggcagccaggcttgcacctctagacaggaaatctcaagatttttctctggaacagaacaaa--aaaaaat-tttttttttt---cctctgggaaaactcaactcagagaaaagacctat-at----gctggctgcctgccttattattctacggagaggactacaggctagcaagcctggcccatact-gtaacacagagcttcaagccattttttaaaatgtctctttctctcttaaaaatataaatcaag------------------------------------------------------------------gccggacgtggtggcttaagcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87653299 393 -  96509753 CCAGGTAACTGTCCTCATCtactaaaaacaggtgggagactgtcaaagtccacacactgaatggtaaggtaagcccatatccccacccacacaacccta-catccccttctccacttggcttttaggatgctggcagccaggcttgcacctctagacaggaaatctcaagatttttctctggaacagaacaaa--aaaaaat-tttttttttt---cctctgggaaaactcaactcagagaaaagacctat-at----gctggctgcctgccttattattctacggagaggactacaggctagcaagtctggcccatact-gtaacacagagcttcaagccattttttaaaatgtctctttctctcttaaaaatataaatcaag------------------------------------------------------------------gccggacgtggtggcttaagcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82479519 392 +  90941950 CCAGGTAACTGTCCTCATCTACTAAAAACAGGTGGGAGACTGTCAAAGTCCACACACTGAAT-----GGTAAGCCCATATCCCCACCCACACAACCCTA-CATCCCCTTCTCCACTTGGCTTTTAGGATGCTGGCAGCCAGGCTTGCACCTCTAGACAGGAAATCTCAAGATTTTTCtctggaacaaaacaaa--aaaaaat-tttttttttt---cctctgggaaaACTCAACTCAGAGAAAAGACCTAT-ATGCTGGCTGGCTGCCTGCCTTATTATTCTACGGAGAGGACTACAGGCTAGCAAGCCTGGCCCATACT-GTAACACAGAGCTtcaagccattttttaaaatgtctctttctctcttaaaaatataaatcaag------------------------------------------------------------------gccggacgtggtggcttaaGCC
i papAnu2.chr10             C 0 I 474
s chlSab2.chr19              24740102 381 +  33263144 CCAGGTAACTGTCCTCATCtactaaaaacaggtgggagactgtcaaagtccacacactgaat-----gataagcccatatc----cccacacaacccta-catccccttctccacttggcttttaggatgctggcagccaggcttgcacctctagacaggaaatctcaagatttttctctggAACAAAACAAA--AAAAA----TTTTTTTTT---CCTCTGGGAAAACTCAACTCAGAGAAAACACCTAT-AT----GCTGGCTGcctgccttattattctacggagaggactacaggctagcaagcctggcccatact-gtaacacagagcttcaagccattttttaaaatgtctctttctctcctaaatatataaatcaag------------------------------------------------------------------gccggacacggtggcttaagcc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1985992 449 -   2117846 CCAGGTAACTGTCCTCATCtaccgaaaacaggtgggaaactgtccaagtccacacactgaat-----gatgagcccatattcccatccccacaaccctaccattcccttctccacttggc-tttaggatgctggcagccaaccttgcacctctagacaggaaatctcaagattcttctctggaacaaaacaaa------aat-tttttgtttt---cctctgggaaaactcaactcagagaaaagacctat-at----gctggcaggctggcttattgttctatggagaggaccataggcaaacaagcctggcccatactcttaacacagagcttcaaaccatttttaaaaaca--tctttatctcttaaaaatataaatcaagacatctgaagatactctaacaagaaagagaaaataggaaacaaaGATTTTTCAAAATTACAAAAAAgctaagtgtggtggctcacacc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46129423  61 -  69331447 I

a score=367576.000000
s hg38.chr22_GL383582v2_alt    117752 197 +    162811 tgtaatcccagcactttgggaggccgaggtgg------------------gcggatcacctgaggtcaggagctcgagaccagactgac----caacgtggagaaa-cctcatgtcttc--------------taaaaatacaaaattagctgtgcatggtggcgcatgcctctaatcccagctactcaggaggctgaggcaagagaatcgcttgaacctgggaagcggaggtt
s panTro4.chr22              40942849 197 +  49737984 tgtaatcccagcactttgggaggccgaggtgg------------------gcggatcacctgaggtcaggagctcgagaccagactgac----caacgtggagaaa-cctcatgtcttc--------------taaaaatacaaaattagctgcgcatggtggcgcatgcctctaatcccagctactcaggaggctgaggcaagagaatcgcttgaacctgggaagcggaggtt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37483127 197 +  46535552 tgtaatcccagcactttgggaggccgaggtgg------------------gcggatcacctgaggtcaggagctcgagaccagcctgac----caacgtggagaaa-ccccatgtcttc--------------taaaaatacaaaattaactgtgcattgtggggcatgcctctaatctcagctattcagcaggctgaggcaggagaatcgcttgaacctgggaagcggaggtt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106690845 216 - 115148730 tgtaattccagcactttgggaggccgaggtgggcggatcacctgaggtcagcggatcacctgaggtcaggagctcaagaccagcctgac----caatgtggagaaacccccatgtcctc--------------taaaaatacaaaatgagctgcgcatggtggcgcatgcctctaatcccacctactcaggaggctgaggcaggagaattgcttgaacctggaaagcagaggtt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86996992 197 +  95678458 tgtaatcccagcactttgggaggccgagatgg------------------gcagatcacctaaggtcaggagttcgagaccagcctgac----caacacggagaaa-ccccgtctctac--------------taaaaatacaaaattagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggtggaggtt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87653692 197 -  96509753 tgtaatcccagcactttgggaggccgagatgg------------------gcagatcacctaaggtcaggagttcgagaccagcctgac----caacacggagaaa-ccccgtctctac--------------taaaaatacaaaattagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggtggaggtt
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24740483 197 +  33263144 tgtaataccagcactttgggaggccgaggtgg------------------gcagatcacctgaggtcaggagtttgagaccagcctgac----caacacggagaaa-ccccatctctac--------------taaaaatacaaaattagctgcacatggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatagcttgcacctgggaggcggaggtt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1986441 202 -   2117846 tataaatccagtactttggaaggctgacatgg------------------gaggattgcttaagcttaggagattgagaccaacctgcctgggcaacaaagtgacatgcacatgtctctacaaaaagcaaaaaaaaaaaaaaaaaatcagccaggcatactgacatgcaactgcggtc-cagctacttgggagg-------------gtcccatgagcccagtggttggaggct
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46129423  61 -  69331447 I
e papAnu2.chr10              82479911 474 +  90941950 I

a score=201147.000000
s hg38.chr22_GL383582v2_alt    117949  85 +    162811 gcggtgagc----------------tgagattgcgccattgcactccagcctgggcaacaagagcgaaactccatct-caataaagaaaaaaaaa-----------------------------tcaagac
s panTro4.chr22              40943046 102 +  49737984 gcggtgagcagaggttgcggtgagctgagattgcgccattgcactccagcctgggcaacaagagcgaaactccatct-caataaagaaaaaaaaa----------------------------atcaagac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37483324  90 +  46535552 gcggtgagc----------------tgagattgcgccattgcactccagcccgggcaacaagagcgaaactccgtct-caaaaaagaaaaaaaaa------------------------aaatatcaagac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106691061  89 - 115148730 gcagtgagc----------------taagattgcaccattgcactccagcctgggcaacaagagcgaaactctgtct-caaaaaagaaaaaaata-------------------------tatatcaagac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86997189 110 +  95678458 gcagtgagc----------------tg----tgagccatggcattccagcctgggcaacaagagcgaaactccgtct-caaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87653889 110 -  96509753 gcagtgagc----------------tg----tgagccatagcattccagcctgggcaacaagagcgaaactccgtct-caaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82480385 111 +  90941950 gcagtgagc----------------tg----tgagccattgcattccagcctgggcaacaagagcgaaactccgtctacaaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaaGAC
i papAnu2.chr10             I 474 C 0
s chlSab2.chr19              24740680 114 +  33263144 gcagtgagc----------------tgagattgcgccattgcattccagcctgggcaacaagagtgaaactccgtct-caaaaaagaaaaaaaaagaaaaacaaacaaacaaacaaaatatatatcaagac
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1986643  82 -   2117846 gcagtgagc----------------catgatcacatcactgcactccagcctgggtaa-gagcgtgaaact--gtct-gaaaacaaaaacaaaaa-----------------------------CCAAAAC
i calJac3.chrUn_GL286373    C 0 I 370
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46129423  61 -  69331447 I

a score=952714.000000
s hg38.chr22_GL383582v2_alt    118034 406 +    162811 atctgaagaacctctaacaagaaagag-aaaataggaaacagacaaagatttttaaaaattatagtacaggccaagtgtagtggctca---cgcctgtaattccagcactttggaaggctgacgtgggaggattgcttaagctcaggtggtg---agaccagcctgcctgggcaacaaagtgagatgctgtctctacaaaaag-t-aaaaaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatcatcacatcactgcactccagcctgggtaagggcatgaaactgaaacaa------aaacaaaaacaaaaaatacgttataatgtattcaaaaagcaagagaaacgattatagccatcaacta
s panTro4.chr22              40943148 406 +  49737984 atctgaagaacctctaacaagaaagag-aaaataggaaacagacaaagatttttaaaaattatagtacaggccaagtgtagtggctca---cgcctgtaattccagcactttggaaggctgacgtgggaggattgcttaagctcaggtggtg---agaccagcctgcctgggcaacaaagtgagatgctgtctctacaaaaag-t-agagaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatcatcacatcactgcactccagcctgggtaagggcatgaaactgaaacaa------aaacaaaaacaaaaaatacgttataatgtattcaaaaagtaagagaaacgattatagccatcaacta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37483414 403 +  46535552 atctgaagaacctctaacaagaaacagaaaaataggaa----acaaagatttttaaaaattataatacaggccaagtgtggtggctca---cgcctgtaattccagcactttggaaggctgaggtgggaggactgcttcagctcaggaggtg---agaccagcctgcctgggcaacaaagtgagatgctgtctctacaaaaag-t-aaaaaacttagccaggtgtactggcatgcacctgtggtccagctacttgggaggatcccttgagcccagtggttggaggctgcagtgagccatgatcacatcactgcactcctgcctgggtaagggcatgaaactgaaacaa------aaacaaaaccaaaaaatacattataatgtattcaaaaaataagagaaacgattacagccatcaacta
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106691150 408 - 115148730 gtctgaagaacctctaacaaga------aaaataggaaacagacaaagatttttaaaaattataatacaggccaagtgtggtggctcacaccacctgtaattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtgacaacaccagcctgcctgggcaacaaagtgagatgctgtctctacaaaaag-taaaaaaactcagccaggtgtactggcatgcacctgtggtccagctacttgggaggatccctcgagcccagtggttggaggctgcagtgagccatgatcacatcactgcactccagcctgggtaagggtgtgaaactgaaacaa------aaacaaaaacaaaaaatacattatgatgtgttcaaaaagtaagagaaatgattacagccatcaacta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86997299 405 +  95678458 atctgaagaacctctaataagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctgtctctacaaaaag-t-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactg--tctg------aaacaaaaacaaaaaacacactataatgtattcaaaaagtaagagaaatgattacagccatcaacta
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87653999 405 -  96509753 atctgaagaacctctaataagaaaggagaaaataggaaacagacaaagatttttaagaattacaatacaggccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctgtctctacaaaaag-t-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactg--tctg------aaacaaaaacaaaaaacacactataatgtattcaaaaagtaagagaaatgattacagccatcaacta
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82480496 412 +  90941950 ATCTGAAGAACCTCtaacaagaaaggagaaaataggaAACAGACAAAGATTTTTAAGAATTACAATACaggccaagagtggtggctca---cgcctacaattccagcactttggaaggctaaggtgggaggactgcctaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctgtctctacaaaaagtt-aaaaaactttGCCAGGTGtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccgcagtgagccatgatcacatcactgcactccagcctgggtaagggCGTGAAACtg--tctgaaacaaaaacaaaaacaaaaaacacattataaTGTATTCAAAAAGTAAGAGAAATGATTACAGCCATCAACTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24740794 405 +  33263144 atctgaagaacctctaacaagaaaagagaaaataggaaacagacaaagaTTTTTAAGAATTACAATACAgaccaagagtggtggctca---cgcctataattccagcactttggaaggctgaggtgggaggattgcttaagctcaggaggtg---agaccagcctgcctgggcaacaaagtaaaatgctgtctctacaaaaag-t-aaaaaactttgccaggtgtactggcatgcacctgtggtccagctacttggaaggatcccttgagcccagtggttggaggccacagtgagccatgatcacatcactgcactccagcctgggtaagggcgtgaaactg--tctg------aaacaaaaacaaaaaaCacattataatgtattcaaaaagtaagagaaattattacagccatcaacta
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46129423  61 -  69331447 I
e calJac3.chrUn_GL286373      1986725 370 -   2117846 I

a score=1007826.000000
s hg38.chr22_GL383582v2_alt    118440 366 +    162811 ggctctgattattctttaaaagtcagtacattcagag-----aaaaaaaaagctcttcaaaatATCAAGAAAAAAAATAAGTAAATAAAAGGCTAGAAggctgggcactgtggcttgtggcacatgcctataatcctggtactttagaagaccgaagtggaaggattgcttgagtccagcagtttgagaccactctgggcaacacagtgagaccttgtttctgcaaaaaatataaatattagctgggcatggtggcacacacctttagtcccaggtaccagggagccccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaacaaaacaaaacaaaacaaaacaaa
s panTro4.chr22              40943554 357 +  49737984 ggctctgattattctttaaaagtcagtacattcagag-----aaaaaaaaagctcttcaaaatATCAGGAAAAAAA-TAAGTAAATAAAAGGCTAGAAggctgggcactgtggcttgtggcacatgcctataatcctggtactttagaagaccgaagtggaaggattgcttgagtccagcagtttgagaccactctgggcaacacagtgagaccttgtttctgcaaaaaacataaatattagctgggcatggtggcacacgcctttagtcccaggtaccagggagccccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaacaaaacaaaacaaaac--------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37483817 348 +  46535552 ggctctgattattctttaaaagtaagtacattcagaa-----aaaaaaaaagctcttcaaaatatcaggaaaaaaa-taagtaagtaaaaggctagaaggctgggcgctgtggcttgtggcgcatgcctataatcctggcactttagaaggccgaagtggaaggactgcttgagtccagcagtttgagaccactctgggcaacacagtgagatcttgtttctgcaaaaaatataaatattagctgggcatggtggcacacgcctttagt--------ccagggagctccagagttcgagaatgcagtaagctgtgatcgcaccactgcattccagcctgagtgacaa-aaaacaaaacaaaac--------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106691558 349 - 115148730 ggctctgattattctttaaaagtcagtacattcagag----aaaaaaaaaagctcttcaaaatatcaggaaaaaaa-taagtaaataaaaggctagaaggctgggcgctgtggcttgtggcacatgcctataatcctggcactttagaaggccgaagtggaaggattgcctgagtccagcagtttgagaccactctgggcaacacagtgagaccttgtttctgcaaaaaatataaatattagctgggcatggtagcacacgcctttaatcccaggtaccagggagccccagagttcgagaatgcagaaagctgtgatcgcaccactgcattccagcctgagtgacaa---------acaaaac--------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86997704 353 +  95678458 ggctc----tgttctttaaaagtcagtacattcagag---aaaaaaaaaaagctcttcaaaatatcaggaaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctatactcctggcactttggaagggcaaagtggaaggattgcttgagtacagcagtttgagaccactctgggcaacacagtgagaccctgtctctgcaaaaattataaatattagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--gagttcgagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaccaaaacaaaac--------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87654404 349 -  96509753 ggctc----tgttcttttaaagtcagtacattcagag-aaaaaaaaaaaaagctcttcaaaatatcaggaaaaaaa-taagtaaataaaagactagaaggctggacgctgtggcttgtggcacatgcctatactcctggcactttggaagggcaaagtggaaggattgcttgagtacagcagtttgagaccactctgggcaacacagtgagaccctgtctctgcaaaaaatataaatattagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--------gagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaacaaaacaaaac--------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82480908 353 +  90941950 GGCTC----TGTTCTTTAAAAGTCAGtacattcagag---aaaaaaaaagcgctcttcaaaatatcaggaaaaaaa-taagtaaataaaagactAGAAGGCTGGACACTGTGGcttgtggcacatgcctataatcctggcactttggaaggccaaagtggaaggattgcttgagtacagcagtttgagaccactctgggcaacacagtgagaccccgtctctgcaaaaaatataaatattagctgggcatggtggcacgcgcctttagtcccaggtaCCAGGGAGCCT--GAGTTCgagaatgcagtgagctgtgaacgcaccactgcattccagcctgagtgacaaaaaaccaaaccaaaac--------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24741199 360 +  33263144 ggctctgattgttctttaaaagtcagtacattcagagaaaaaaaaaaaaaagctcttcaaaatATCAGGAAAAAAA-TAAGTAAGTAAAAGACTAGAAggctggacgctgtggcttatggcacatgcctataatcctggcactttggaaggccaaagtggaaggattgcttgagtacagcagttttagaccactctgggcaacacagtgagaccctgtctctgcaaaaaatataaatattagctgggcatggtggcacacgcctttagtcccaggtaccagggagcct--gagttcgagaatgcagtgagttgtgaatgcaccactgcattccagcctgagtgacaaaaaaccaaaccaaaac--------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1987095 354 -   2117846 GGCTCTGACGATTCTTTAAAAATCAGTACATTCAAAG-AAAAAAAAAAAAAGCTCTTCAAAATATCAGGAAAAAAA-TAAGTAAATAAAAGGTTAGAAGGCTGGGCAGTATGGCTTgtgactcatgcctctaatcctggcactttggaaggccaaagtgggaagactacttgagtctagcagtttgagaccagtatgggcaacatagtgagaccctgtctctacaaaaaatacaaaaagtagctgggcatggtggcacatgcctttagtcccagctactagagagccccagagttcgaggctgcagtgagctgtgatcataccactgcattccagcttaagtgacaa-------aAACAAAAC--------
i calJac3.chrUn_GL286373    I 370 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e canFam3.chr10              46129423  61 -  69331447 I

a score=2365169.000000
s hg38.chr22_GL383582v2_alt    118806 811 +    162811  
s panTro4.chr22              40943911 809 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37484165 816 +  46535552  
i ponAbe2.chr22             C 0 I 55
s nomLeu3.chr7b             106691907 804 - 115148730  
i nomLeu3.chr7b             C 0 I 53
s rheMac3.chr10              86998057 776 +  95678458  
i rheMac3.chr10             C 0 I 55
s macFas5.chr10              87654753 776 -  96509753  
i macFas5.chr10             C 0 I 55
s papAnu2.chr10              82481261 775 +  90941950  
i papAnu2.chr10             C 0 I 55
s chlSab2.chr19              24741559 775 +  33263144  
i chlSab2.chr19             C 0 I 55
s calJac3.chrUn_GL286373      1987449 818 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46129484 801 -  69331447  
i canFam3.chr10             I 61 I 9
e mm10.chr15                 82848423 2899 + 104043685 I

a score=19664.000000
s hg38.chr22_GL383582v2_alt    119617 7 +    162811 GAAATAT
s panTro4.chr22              40944720 7 +  49737984 GAAATAT
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106692764 7 - 115148730 GGAATAT
i nomLeu3.chr7b             I 53 C 0
s rheMac3.chr10              86998888 7 +  95678458 GAAATAT
i rheMac3.chr10             I 55 I 3
s macFas5.chr10              87655584 7 -  96509753 GAAATAT
i macFas5.chr10             I 55 I 3
s papAnu2.chr10              82482091 7 +  90941950 GAAATAT
i papAnu2.chr10             I 55 I 3
s chlSab2.chr19              24742389 7 +  33263144 GAAATAT
i chlSab2.chr19             I 55 I 3
s calJac3.chrUn_GL286373      1988267 7 -   2117846 GAAATGT
i calJac3.chrUn_GL286373    C 0 I 12
s canFam3.chr10              46130294 7 -  69331447 GAAATAG
i canFam3.chr10             I 9 C 0
e mm10.chr15                 82848423 2899 + 104043685 I
e ponAbe2.chr22              37484981 55 +  46535552 I

a score=47793.000000
s hg38.chr22_GL383582v2_alt    119624 27 +    162811 -----AATAATATGCTTCATAAGCATTATACA-------------------------------------
s panTro4.chr22              40944727 27 +  49737984 -----AATAATATGCTTCATAAGCATTATACA-------------------------------------
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37485036 27 +  46535552 -----AATAATATGCTTCCTAAGTATTATACA-------------------------------------
i ponAbe2.chr22             I 55 C 0
s nomLeu3.chr7b             106692771 23 - 115148730 -----AATAATATGCTTC----GTATTATACA-------------------------------------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86998898 25 +  95678458 -----CATAGTATGCTTCATAAG--TTATACA-------------------------------------
i rheMac3.chr10             I 3 C 0
s macFas5.chr10              87655594 25 -  96509753 -----CATAGTATGCTTCATAAG--TTATACA-------------------------------------
i macFas5.chr10             I 3 C 0
s papAnu2.chr10              82482101 25 +  90941950 -----CATAGTATGCTTCATAAg--ttataca-------------------------------------
i papAnu2.chr10             I 3 C 0
s chlSab2.chr19              24742399 25 +  33263144 -----CATAGTATGCTTCATAAG--TTATACA-------------------------------------
i chlSab2.chr19             I 3 C 0
s calJac3.chrUn_GL286373      1988286 27 -   2117846 -----TATAGTATGCTTCCTAAGTATTATAGA-------------------------------------
i calJac3.chrUn_GL286373    I 12 C 0
s canFam3.chr10              46130301 65 -  69331447 AACCATATAGTATACTTTATG----TTACAGAGTCAGATGTTGAAAAATGGGGGAAAAGCATCGATAAA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82848423 2899 + 104043685 I

a score=28485378.000000
s hg38.chr22_GL383582v2_alt    119651 6001 +    162811  
s panTro4.chr22              40944754 6007 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37485063 6012 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106692794 5993 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              86998923 6000 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87655619 6000 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82482126 6000 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24742424 6000 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1988313 6005 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82851322 6060 + 104043685  
i mm10.chr15                I 2899 C 0
s canFam3.chr10              46130366 6147 -  69331447  
i canFam3.chr10             C 0 C 0

a score=16892.000000
s hg38.chr22_GL383582v2_alt    125652 22 +    162811 TTGAAtttc---tattttttt--tttt
s panTro4.chr22              40950761 24 +  49737984 TTGAAtttc---tattttttttgtttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491075 18 +  46535552 TTGAATTTA---TATATATAt------
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106698787 22 - 115148730 TTGAATTTC---TAttttttt--tgtt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87004923 14 +  95678458 TTGAATTAC-------ttttt------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87661619 14 -  96509753 TTGAATTAC-------ttttt------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488126 14 +  90941950 ttgaattac-------ttttt------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24748424 14 +  33263144 TTGAAtttc-------ttttt------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994318 15 -   2117846 TTGAAtttc---t---tttct------
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82857382 21 + 104043685 TTAAATTCCATCTCCTTTTTC------
i mm10.chr15                C 0 C 0
e canFam3.chr10              46136513  0 -  69331447 C

a score=745762.000000
s hg38.chr22_GL383582v2_alt    125674 292 +    162811 tggt---------tttttgagacaagagtctcactctgtcacccaggctggagtgcaattgcacgatctcagctcaatgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcatggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctggccaggctggtctcgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctggaattacaggcatgagccaccacgcctgacc
s panTro4.chr22              40950785 292 +  49737984 ttgt---------tttttgagacaagagtctcactctgtcacccaggctggagtgcaattgcacgatctcagctcactgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcgtggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctggccaggctggtctcgaactcctgacctcgtgatccgcccgcctcggcctcccaaagtgctggaattacaggcatgagccaccacgcctgacc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491093 286 +  46535552 ---t---------tttttgag---agagtctcgctctgtcacccaggctggagtgcaatggcacgatctcggctcactgcaactt-ccgcctgcag-----ggttcaagcaattctcttgcctcagcctcccgagtagctggg-actacaggcgcgtggccaccaggctcggctaa--ttttttgtatttttagtagagacagggtttcactgtgctggccaggctggtctcgaactcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccatgcctgacc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106698809 303 - 115148730 ttgttttgttctgtttttgagac-agagtctcactctgtaacccaggttggactgcaatggcacaatctcggctcactgcaactt-ctgcctgcag-----ggttcaagcaattctcttgcctcagcctccagagtagctgggaactacaggtgcgtggccaccaggctcggttaattttttttgtatttttagtagagacagggtttcaccgtgctggccaggctggtctcgaactcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcctgacc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87004937 286 +  95678458 ---c---------tttttgag---acagtctcgttccatcaccaaggctggagtgcaatggcacaatctcggctcactgtaacct-ctacctgcag-----ggctcaagcaattctcctacctcagcctcccgagtagctggg-actacaggcacgtggccacgattcctgactaa--tgttttgtatttttagtagagagagggtttcaccatgctggccaggctggtcttgaactcctgatctcgtgattcgcccgccttggcctcccaaagtgctgggattagaggcatgagccaccgagcctgATC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87661633 286 -  96509753 ---c---------tttttgag---acagtctcgttccgtcaccaaggctggagtgcaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcttcccgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctggccaggctggtcttgaactcctgatctcgtgattcgcccgccttggcctcccaaagtgctgggattagaggcatgagccaccgagcctgATC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488140 286 +  90941950 ---c---------tttttgag---acagtctcgttccgtcaccaaggctggagtgcaatggcacaatctcggctcactgcaacct-ctacctgcag-----ggttcaagcaattctcctacctcagcctcccaagtagctggg-actacaggcacgtggccACGATGCCtgactaa--tgttttgtatttttagtagagacagggtttcaccatgctggccaggctggtcttgaactcctgatctcgtgattcgcccgccttggcctcccaaagtgctgggattagaggcgtgagccaccgagcctgatc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24748438 291 +  33263144 ---c---------tttttgag---acagtctcgttccgtcaccaaggctggagttcaatggcccaatctcggctcactgcaacct-ctacctgcaggtagaggttcaagcaattctcctacctcagcctcctgagtagctggg-actacaggcacgtggccacgatgcctgactaa--tgttttgtatttttagtagagacagggtttcaccatgctggccaggttggtcttgaactcctgatctcgtgattcacccgccttggcctcccaaagtgctgggattagaggcgtgagccaccgagcctgATC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994333 242 -   2117846 ---t---------tttgtgagac-agagttttgctctgttgcccaggctggagtgcagtagtgcgatctcggctcactgcaacctcccaccttcca-----ggttgaagcaattctcttgcctcagcctacggaggagctgga-actacaggcctgtg-------------------------------------------------tcaccatgcccgccaggctggtcttgaattcctgaccttgtgttctgcccgccttggcctccctaagtgctagatttacaggtgtgagccactgcacccggcc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82857403   0 + 104043685 C
e canFam3.chr10              46136513   0 -  69331447 C

a score=89050.000000
s hg38.chr22_GL383582v2_alt    125966 27 +    162811 TTGAATTTCATCTTTTATATTTTATCC
s panTro4.chr22              40951077 27 +  49737984 CTGAATTTCATCTTTTATATTTTATCG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491379 22 +  46535552 TTGAATTTCATCTTTTATATTT-----
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699112 27 - 115148730 TTCAATTTCATCTTTTATATTTTATCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005223 27 +  95678458 TTGAATTTCATCTTTTATATTTTACCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87661919 27 -  96509753 TTGAATTTCATCTTTTATATTTTACCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488426 27 +  90941950 ttgaatttcatcttttatattttaccC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24748729 27 +  33263144 TTGAATTTCATCTTTTATATTTTACCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994575 27 -   2117846 TTGAATTTCATCTTTGATGTTTTATCC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46136513 27 -  69331447 TTGAATTTCATCTTTTATTTCTTAACC
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857403  0 + 104043685 C

a score=302836.000000
s hg38.chr22_GL383582v2_alt    125993 76 +    162811 TATCCACTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG
s panTro4.chr22              40951104 76 +  49737984 TATCCACTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491401 76 +  46535552 TATCCACTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699139 76 - 115148730 TATCCACTTCTGAAAAAGCACATATGCAGAGAAATGGCCTAAAGAGTGAGGCAAGAATCTGT-AGTAGAATGAAAAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005250 76 +  95678458 TATCCCCTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87661946 76 -  96509753 TATCCCCTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488453 76 +  90941950 TATCCCCTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24748756 76 +  33263144 TATCCACTTCTGAAAATGCACATATGCAGAGAAATGGCCTAAAGAGTGAGACAAGAATCTGT-AGTACAATGAAAAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994602 76 -   2117846 TATCCACTTCTGAAAACACACATAGGCAGAAAAAAGGCCTGAAGAGTGAGGCAGGAATCTGC-AGCAGAATGAAAAG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82857403 73 + 104043685 TATCAATTTCTAATAATGCAAGTAAGCAGATAAATGGTCTAAAGAATGA---AGGAATCTGT-AATACAACAAAGAA
i mm10.chr15                C 0 C 0
s canFam3.chr10              46136540 77 -  69331447 TATCCATTTCTGAAAATGCCAGTAAGCAGAGAAATGGCCTCAAGAGTACAGCAGACATCTATGAGGAGTATGAAAAG
i canFam3.chr10             C 0 I 2

a score=1888.000000
s hg38.chr22_GL383582v2_alt    126069 1 +    162811 C
s panTro4.chr22              40951180 1 +  49737984 C
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491477 1 +  46535552 C
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699215 1 - 115148730 C
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005326 1 +  95678458 C
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662022 1 -  96509753 C
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488529 1 +  90941950 C
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24748832 1 +  33263144 C
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994678 1 -   2117846 A
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82857476 0 + 104043685 C
e canFam3.chr10              46136617 2 -  69331447 I

a score=601640.000000
s hg38.chr22_GL383582v2_alt    126070 198 +    162811 AGCACTCTGAGTGCATA--CAAACCCAATACAGCAAAAACATGTATGTCTCATATATCTAATAA-TGCC----TTATTAGACAAATGAGCCCC-CAA-ACTCAACCAGATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGCCTCCCAGTTA-TG------CGGGGGAGGGGGTGTGGGGTAAGAAAAAC
s panTro4.chr22              40951181 198 +  49737984 AGCACTCTGAGTGCATA--CAAACCCAATACAGCAAAAACATGTATGTCTCATATATCTAATAA-TGCC----TTATTAGACAAATGAGCCCC-CAA-ACTCAACCGGATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATAAGCGTTGCAGTTA-TG------GGGGGGAGGGGGTGTGGGGTAAGAAAAAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491478 202 +  46535552 AGCATTCTGAGTGCATA--CAAACCCAATATAGCAAAAACATGTATGTCTCATGTATCTAATAA-CGCCTTCATTATTAGACAAATGAGCCCC-CAA-ACTCAACCGTATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATGAGTCTTCCGGTTA-TG------GGGGGGAGGGGGTGTGGGGTAAGAAAAAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699216 201 - 115148730 AGCA--CTGAGTGCATA--CAAACCCAATATAGCAAAAATATGTACGTCTCATATATCTAATAA-TGCCTTCATTATTAGACAAATGAGCCCC-CAA-ACGCAACCGGATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAATTTTTCAATGACTCTTCCAGTTATTG------GGGGGGAGGGGGTGTGGGGTAAGAAAAAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005327 207 +  95678458 AGCACGCTGAGTGCATA---AAACCCAACATAGCAAAAACATGTATGTCTCATATATCTAATAA-TGCCTTCATTATTAGACAAATGAGCCCC-CAA-ACTCAACCAGATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCTTCCAGTTA-TTGGGGGGGGGGGGAGGGGGTACAGGGAAAAAAAAAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662023 206 -  96509753 AGCACGCTGAGTGCATA---AAACCCAACATAGCAAAAACATGTATGTCTCATATATCTAATAA-TGCCTTCATTATTAGACAAATGAGCCCC-CAA-ACTCAACCAGATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCTTCCAGTTA-TT-GGGGGGGGGAGAGTGGGTACAGGGTAAAAAAAAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488530 205 +  90941950 AGCACCCTGAGTGCATA---AAACCCAACATAGCAAAAACATGTATGTCTCATTTATCTAATAA-TGCCTTCATTATTAAACAAATGAGCCCC-CAA-ACTCAACCAGATTAAAATATGGGGCTGTGTTATTACCGTCAATGA-----AAAACAGCAGTTTTTCAACGAGTCTTCCAGTTA-TT--GGGGGGAGGGAGTGGGtacagggtaaaaaaaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24748833 207 +  33263144 AGCACCCTGAGTGCATA---AAACCCAACATAGCAAAAACATGTATGTCTCATATATCTAATAA-TGCCTTCATTATTAGACAAATGAGCCCC-CAA-ACTCAACCAGATTAAAATATGGGGCTGTGTTATTACTGTCAATGA-----AAAACAGCAGTTTTTCAACCAGTCTTCCAGTTA-TGGGGGGGGAGGGGAGTGGGTACAGGGTTAAAAAAAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994679 194 -   2117846 AATGCTCTGAGTGCATA--CAAATCCAATATAGCAAAAACATGTATGTCTCATATATCTAGTAATTGCCTTCATTATTAGACAAATGAGCCCC-TAA-ACTCAACTGGATTAAAATATAGGGTTGTGTTATTACTGTCAATGA-----AAAATAGCAATTTGTCAATGAGTCTTTCAGTTA-TG------GCGGGA---------TGGGTAAGAAAAAA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82857476 154 + 104043685 AATACTAGGAATACACAAACACATTCAATATAG---------------------TCTTTAAAAA-------CTTCATTAGATAAATGAGTCTTACAA-ATTCAACTGGAGT-AAATATTGGA--ATGTTATTACAAACAAAGA------------CATTTTTTAAATAAATCTTT-AGTTA-CT-------------------GTGGGGTGACAAAAGC
i mm10.chr15                C 0 I 76
s canFam3.chr10              46136619 168 -  69331447 AACATTCTGGGTAAATT--CAAATTTAATACAGAAAAAA--------------------------AACCCTCATTATGAAATAAGTGAACCCC-CAACATTCAACTGGGTTAAAATAT------GTGCTATTAGTATTAATAAAAAAAAAAAAAGCAATTTTCAAGTAAGTCTTCCAGCTA-TG------CTGGGG---------AGGGTGAGAAAAAA
i canFam3.chr10             I 2 C 0

a score=-209.000000
s hg38.chr22_GL383582v2_alt    126268 1 +    162811 C
s panTro4.chr22              40951379 1 +  49737984 C
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491680 1 +  46535552 T
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699417 1 - 115148730 C
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005534 1 +  95678458 A
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662229 1 -  96509753 A
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24749040 1 +  33263144 C
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994873 1 -   2117846 C
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46136787 1 -  69331447 C
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857630 76 + 104043685 I
e papAnu2.chr10              82488735 0 +  90941950 C

a score=444019.000000
s hg38.chr22_GL383582v2_alt    126269 179 +    162811 AAATCCttttttttttttttttttttttttttttttttttttgagacaaggtctcactc--ttgcccaggctggagtgtgcaggggcacagtcgtagttcactgcagcatcaaacacctggcttcaaatgatcctcctgcctcggcctctcaaagttttgggactacaggcataagccact
s panTro4.chr22              40951380 170 +  49737984 AAATCC---------tttttttttttttttttttttttttttgagacaaggtctcactc--ttgcccaggctggagtgtgcaggggcacagtcgtagttcactgcagcatcaaacacctggcctcaaatgatcctcctgcctcggcctctcaaagttttgggactacaggcataagccacT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491681 172 +  46535552 GAAttc---------tttttttttttttttttttttttttttgagacaaggtctcactctgttgcccaggctggagtgtgcaggggcacagtcatagttcactgcagcatcaaacacctggcctcaaatgatcctcctgcctcggcctctcgaagttttgggattataggcataagccact
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699418 165 - 115148730 AAtt-----------tttttttttttttttttttgtttttttgagacaaggtctcactctgttgcccaggctgg-----gcaggggcacagtcatagttcactgcagcatcaaacacctggcctcaaatgatcatcctgtctcgacctctcaaagttttgggattacaggcataagccacT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005535 165 +  95678458 CAAA----------------ttttttttttatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggggcacagtcatagttcactgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaagttttgggattacaggcataagccacT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662230 164 -  96509753 CAAA-----------------tttttttttatttttattttttagacaaggtctcactctgttgctcaggctggagtgtgcaggggaacagtcatagttcaatgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaagttttgggattacaggcataagccact
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488735 164 +  90941950 -aat----------------ttctttttttatttttattttttagacaaggtctcactccgttCCTCAGGTTGGAGTGTGCAGGGGcacagtcatagttcactgcagcatcaaacacctggcctcaaacgatcctcctgcctcggcctcccaaagttttgggattacaggcataagccact
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24749041 166 +  33263144 CAAA---------------tttctttttttatttttatattttagacaaggtctcactctgttgctcaggctggagtgtgcaggggcacagtcatagttcactgcagcatcaaacacctggcctcaaatgatcctcctgcctcagcctcccaaagttttgggattacaggcataagccacT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1994874 155 -   2117846 AAAt--------------------------tcttatttttttgagacaaagtctcactctgttgcccagactggggtatgcaagggcacagtcatagctcagtgcagcctcaaacacctggcctctagcgagcctcctgcctcggcctcccaaagttttgggattgtagacataagccacT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82857630  76 + 104043685 I
e canFam3.chr10              46136788   0 -  69331447 C

a score=279056.000000
s hg38.chr22_GL383582v2_alt    126448  81 +    162811 acTTTCATTTCTCTGCTTTCATGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCCCCA
s panTro4.chr22              40951550  81 +  49737984 ACTTTCATTTCTCTGCTTTCATGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCACCACTCCCCA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491853  81 +  46535552 acTTTCATTTCTCTGCTTTCATGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCCCCA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699583  81 - 115148730 ACTTTCATTTCTCTGCTTTCATGTATTAGGT--TGATCACTGAACTGTGGGTTG----------TAACACTGGCT-------GCTGATTGCCACTCCCCA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005700  81 +  95678458 ACTTTTATTTCTCTGCTTTCATGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCCCCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662394  81 -  96509753 acTTTTATTTCTCTGCTTTCATGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCCCCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488899  81 +  90941950 acttttatttctctgctttcaTGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCCCCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24749207  81 +  33263144 GCTTTTATTTCTCTGCTTTCATGTATTAGGG--TGATCACTGAACTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCCCCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1995029  81 -   2117846 ACTTTCATTTCTCTGCTTTCATGTATTAGAG--TAATCACTGAATTGCGGGTTT----------TAACACTGGCT-------GCTGATCGCCACTCTCTA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46136788 100 -  69331447 ACTGTCATCTACTTGCTTCCCTGTATTATAGCCTGATCACTGGACTGAGGTCTCAAAATAACAATAACGCAGTCCCTCCAAGGCTGTCCTGCCCTCCCCA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857630  76 + 104043685 I

a score=670934.000000
s hg38.chr22_GL383582v2_alt    126529 201 +    162811 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCAAATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TATGGGT------------------TCCACACA-------AACTTTGGAGTCA------ACCTC-TTCTTGGCATATGACTGTGTCTACAGCACCC--CTCTCTCCACCA-
s panTro4.chr22              40951631 201 +  49737984 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCAAATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TATGGGT------------------TCCACACA-------AACTTTGGAGTCA------ACCTC-TTCCTGGCATATGACTGTGTCTACAGCACCC--CTCTCTCCACCA-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37491934 201 +  46535552 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCCAATTC-CTTATGTCCAAGTGCACATTTTTGCAGCTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TACGGGT------------------TCCACACA-------AACTTTGGAGTCA------ACCTC-TTCTTGGCATATGATTGTGTCTAAAGCACCC--CTCTCTCCGCCA-
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699664 199 - 115148730 ACACTGAGAAACAGACCTGGCCAGAGAACTGCAGCTAATTC-CTTATGTCCAAGTGCACATTTTTGCAGCTTTACTATAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------AATGGGT------------------TCCACACA-------AACTTTGGAGTCA------ACCTC-TTCTTGCC--ATGACTGTGTCTAAAATACCC--CTCTCTCCACCA-
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005781 203 +  95678458 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGAAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TATGGGT------------------TCCACACA-------AACTTTGAAGTCA------TCCTC-TTCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA-
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662475 203 -  96509753 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGAAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TATGGGT------------------TCCACACA-------AACTTTGAAGTCA------TCCTC-TTCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA-
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82488980 203 +  90941950 ACACTGAGAAACAGAACTGGCCAGATAAATGCAGCCAATTC-CTTCTGTCCAAGTGCACATTTTTGCAGGTTTACTGTAATTGCC-AACTACCTATGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TATGGGT------------------TCCACACA-------AACTTTGAAGTCA------TCCTC-TTCTTGGCATAAGATTGCGTCTAAGGCACCCCTCTCTCTCCAGCA-
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24749288 203 +  33263144 ACACTGAGAAACAGAACTGGCCAGAGAAATGCAACCAATTC-CTTCTGTCCAAGTGCACATTTTTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGGTGACTCCAGGACACTCAG--------CCCA-------TATGGGT------------------TCCACACA-------AACTTTGAAGTCA------TCCTC-TTCTTGGCGTAAGACTGCATCTAAGGCACCCCTCTCTCTCCAGCA-
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1995110 198 -   2117846 ACAT---GAAACAGAATTGGCCAGAGAACTTCAGCCGATGC-CTTATGTCCAAATGCAGATTACTGCAGGTTTACTGTAATTGCC-AACTACCTGTGATGACTGCTGACTCCAGGACACTCAG--------TCCG-------TATGGGT------------------TCCACACA-------AACTTTGGAGTCA------ACCTC-TTCTTGGCATATGACTGTTTTGAAGGCACCC--CTCTCTCAACTA-
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82857706 185 + 104043685 ACTCCAAGACAAAGACCCATCCTGAGAACCAAAGCTAGTTC-CT------CAA-------------------------AATCGC----CTGCTTATGGTGACTAGTGACTCTGGGACACTCAA--------CTTGGTATTACTATGGAT------------------TCCTTATACTGTAGTCACCTATAAGTCAGATCTGACTGC-TTCTTGACATAAAATTGTCTTCAAAGTAC----CTCTCTTGACCA-
i mm10.chr15                I 76 C 0
s canFam3.chr10              46136888 231 -  69331447 ACTTTGAGAAACAGAACTTGCCAGAGAACAGAAATCAAGTCTCTTATGTCCAAATGTACGCTACTCCAAGTTGCCTGTAATTACCGAACTACCTGTGATGACTGGCGACCCCAGGACACTCAAATCTCATCACTG-------TATGGATTCCTGAGAGCTGCAGTCATCCACACA-------GACCTAGGGCTTA------ACCTCTTTCTTGACATGTAATGGTGTGCAAGGCACTC--CTCCCTTCAACCA
i canFam3.chr10             C 0 C 0

a score=1627631.000000
s hg38.chr22_GL383582v2_alt    126730 566 +    162811  
s panTro4.chr22              40951832 567 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37492135 574 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106699863 568 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87005984 569 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87662678 567 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82489183 568 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24749491 558 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1995308 537 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46137119 754 -  69331447  
i canFam3.chr10             C 0 I 176
e mm10.chr15                 82857891   0 + 104043685 C

a score=2081048.000000
s hg38.chr22_GL383582v2_alt    127296 639 +    162811  
s panTro4.chr22              40952399 639 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37492709 636 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106700431 639 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87006553 641 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87663245 641 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82489751 641 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24750049 637 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1995845 638 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46138049 646 -  69331447  
i canFam3.chr10             I 176 C 0
e mm10.chr15                 82857891   0 + 104043685 C

a score=1351873.000000
s hg38.chr22_GL383582v2_alt    127935 509 +    162811  
s panTro4.chr22              40953038 512 +  49737984  
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106701070 516 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87007194 509 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87663886 510 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82490392 510 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24750686 510 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1996483 527 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46138695 523 -  69331447  
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857891   0 + 104043685 C
e ponAbe2.chr22              37493345   0 +  46535552 C

a score=1553677.000000
s hg38.chr22_GL383582v2_alt    128444 462 +    162811 ACATTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAAATACCAGTTGTCCTGTC--AGTTTGGCCTT-GAAAGTGGGTAGCCACCCACAA---TAAATCTGTCCCTTCACTGCCACCCTCTTATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCACCCCC--TCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTCTACATGAGTATTAA---TTTTTTCCCCTTGTGATGTGCTCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGCCTTCTCAAGAGATA--TTCTCTATAAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
s panTro4.chr22              40953550 462 +  49737984 ACATTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAAATGCCAGTTGTCCTGTC--AGTTTGGCCTT-GAAAGTGGGTAGCCACCCACAA---TAAATCTGTCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCACCCCC--TCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGTCTACACGAGTATTAA---TTTTTTCCCCTTGTGATGTGCTCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAGAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGCCTTCTCAAGAGATA--TTCTCTATAAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37493345 458 +  46535552 ACACTGCCCAGAGGGTCTTCTACATGGTCAGTAAAAGATGCCAGTTGTCCTGTC--AGTTCGGCCTT-GAAAGTGGGTAGCCACCCACAA---TAAATCTGTCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCACCACC--CCCCCATCATTCTTAGAACTATCAAGAGCAATTCTGCCTACATGAGT----G---TTTTTTCTCCTTGTGATGTGCCCCTGCTCTACTCCTCAGTGCCAGAGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGAGGGCTAAACTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGCCTTCTCAAGAGATA--TTCTCTATAAAAAGCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATACAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106701586 464 - 115148730 ACACTGCCCAGAGGGTCTTCCACATGGTCAGTAAAAGATGCCAGTTGTCCTGTC--AGTTCGGCCTT-GAAAGTGGGTAGCCACCCACAA---TAAATCTGTCCCTTCACTGCCACCCTCTCATAAGGACCTCCATACTGTTCCAGCTGGCTCTTCACCTCCCTCCCCCATCATTCTTACAACTATCAAGAGCAATTCTGTCTACACAAGTATTAA---TTTTTTCTCCTTGTGATGTGCTCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAACCCTTCTCAAGAGATA--TTCTCTATAAAAAGCTGTGTTACACGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87007703 458 +  95678458 ACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAGATGCCAGTTGTCCTGTC--AGGTCGGCCTTCGAAAGTGGGTAGTCACCCACAA---TAAATCTGTCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTACCTCC----CCCATCATTCTCAGAACTATCAAGAGCAATTCTGTCTACACGAGTATTAA---TTTTTTCTGCTTGTGATGTGCTCCTGCTCTA---CTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGTTTTCTCAAGAGATA--TTCTCTATAAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87664396 458 -  96509753 ACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAGATGCCAGTTGTCCTGTC--AGGTCGGCCTTCGAAAGTGGGTAGTCACCCACAA---TAAATCTGTCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTACCTCC----CCCATCATTCTCAGAACTATCAAGAGCAATTCTGTCTACACGAGTATTAA---TTTTTTCTGCTTGTGATGTGCTCCTGCTCTA---CTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGTTTTCTCAAGAGATA--TTCTCTATAAAAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82490902 458 +  90941950 ACACTGCCCAGCGGGTCTTTCACACGGTCAGTAAAAGATGCCAGTTGTCCTGTC--AGGTCGGCCTTCGAAAGTGGGTAGTCACCCACAA---TAAATCTGTCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACTGTTCCAGCTGGCTCTTTACCTCC----CCCATCATTCTCAGAACTATCAAGAGCAATTCTGTCTACACGAGTATTAA---TTTTTTCTGCTTGTGATGTGCTCCTGCTCTA---CTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGTTTTCTCAAGAGATA--TTCTCTATAAAAAACTATGTTACATGTTGTTTAATTAAtccttctggaaataaaatcagGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24751196 458 +  33263144 ACACTGCCCAGCGGGTCTTCCACACGGTCAGTAAAAGATGCCAGTTGTCCTGTC--AGGTCGGCCTTCGAAAGTGGGTAGTCACCCACAA---TAAATCTGTCCCTTCACTGCCGCCCTCTCACAAGGACCTCCATACGGTTCCAGCTGGCTCTTTACCTCC----CCCATCATTCTTAGAACTATCAAGAGCAATTCTGTCTACACGAGTATTAA---TTTTTTCTGCTTGTGATGTGCTCCTGCTCTA---CTCAGTGCCAGTGGCCTTCTCTA---GATAAAACAAGGCTGA-ATGGGGGCTAAACTGAACAAAAACATTAAAGCTAGCAGTTTAAACTAATGAAAAGTTTTCTCAAGAGATA--TTCTCTATAAAAACCTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAATCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGCTCCATATTCTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1997010 466 -   2117846 ACACTGCCCAGAGGGTCTTCCATACGGTCAGTAAAAGATGCCAGTTGTCCTGTG--AGGTTGGCCTT-GAAAGTGGGTAGCCAACCACAA---TAAATCTGTCCCTTCACCCCTGCCCTCTCATAAGGACCTCCATACTGTTACAACTGGCTTCTCACCTCC----CCCATCATTCTTAGGACTAACAAGAGCAATTTTGTCTACATCAGTATTAATATTTTTTTCTGCCTGTGATGTGCTCCTGCTCTACTCCTCAGTGCCAGTGGCCTTCTCTAAATGATAAAACAAGGCTGA-ATGGGGGCTAAATTGAACAAAAACATTAAAACTGGCAGTTTAAACTAATGAAAAGCTTTCTCAAGAGATG--CTATCTATAATAAACTATGTTACATGTTGTTTAATTAATCCTTCTGGAAATAAAACCAGGCTTCTGAAGATCTGAGTGTATAAACAATGTTGCCACTTGTCCCATATTCCT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46139218 417 -  69331447 ACACT-CCCAGAGGATCCAGGATGCAGTCAGTGACAGCTGCCACCTGTCCTGTCAGAGGTCAGCCTT-GAAAGTAGGTGGCCACCAACACTTTTCAGTGTGTCCTTTCTCTGCCTCCC-CTCACAAGGACCTCC--------------------------------CTCAGTATTTCCAGAACCGCCGAAAGC-ATTGTGCCCACACAAGT----A------TCTCTATTTGTGGTGTGCCTCTATCCTGGCTCTTGGTGCCAGTGGCTTTCTAGA---------AGGTGCCTGAGATGGGTG--ACAGTGGACAGAAAGACTACATCTGGAAGTT-----TAATGAAAAGCTTTCTCAAGAGATGACCTCTCCCCAAGTAAGTATTTTACATGTTGTTTAATTAATCATTCTGTAAACAAAATCAGGCTTCTGAAAACCTGTGTATATAAACAATTTTGTCACTTGCTGCAAATTTTT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857891   0 + 104043685 C

a score=123379.000000
s hg38.chr22_GL383582v2_alt    128906 33 +    162811 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC
s panTro4.chr22              40954012 33 +  49737984 CCTAAATAGGAGCCACCAAGAGCTAAAGGCTAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37493803 33 +  46535552 CCTAAATAGGAGCCACGAAGAGCTAAAGGCCGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702050 33 - 115148730 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87008161 33 +  95678458 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87664854 33 -  96509753 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82491360 33 +  90941950 CCTAAATAGGAGCCACCAAGAGCTAAAGGCCAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24751654 18 +  33263144 ---------------CCAAGAGCTAAAGGCCAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1997476 33 -   2117846 CGTAAATAGGAGCCACCAAGAGCTAAAGGCTAC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82857891 33 + 104043685 CCTAATTCAGAGCCACCAAGAGCAAGAGACCAC
i mm10.chr15                C 0 C 0
s canFam3.chr10              46139635 33 -  69331447 CCTCAGCAGGAGCTCCTAAGAACTGAAGACCAG
i canFam3.chr10             C 0 C 0

a score=1322589.000000
s hg38.chr22_GL383582v2_alt    128939 440 +    162811 TTTAAACATCAGGGTATCAGGCCTGAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACAGGAAGGACTCCTTCTTAGGTCTGTTCTCAGCCTTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCCTTTCCCTATTGTTATGGTTCTACTTTATGAAAAAGA----AAAAAAAAAAATCCAAGGCCAAATACCT-CCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATACATGAAGCACCTGAGTAGGAGAAGGTGGTTGCCCAGGTTTATCTTTTTTAGGAATGCCAAGTAAACCAATTAAGAAAACCAAGTAGCATATACCAACGACAGAAAATGTAAACCTGGAGCTATaaaataagtaataggctgggt-gtggtggctcacacctgt-aatcccagtgttttgg--gaggctgaggtgtgaggatcgcttgaggtc--ag
s panTro4.chr22              40954045 435 +  49737984 TTTAAACATCAGGGTATCAGGCCTCAGGCTG-----------------CCCTATCTC----CAGGGAAAACAGATACAGGAAGGACTCCTTCTTAGGTCTGTTCTCAGCCTTCCCCTGCAGATTCCCTGTCCTGT-ATGATTACCCTTTTCCCTATTGTTATGGTTCTACTTTATGAAAAAG------AAAAAAAAAATCCAAGGCCAAATACCT-CCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACGAGAAGGTGGTTGCCCAGGTTTATCTTTTTTAGGAATGCCAAGTAAACCAATTAAGAAAACCAAGTAGCATATACCAACGACAGAAAATGTAAACCTGGGGCTATAAAATAAGTAATAggctgggt-gtggtggctcatacctgt-aatcccagtgttttgg--gaggctgaggtgtgaggatcgcttgaggtc--ag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37493836 443 +  46535552 TTTAAACATCAGCATATCAGACCTCAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACAGGAAGGACTCCTTCTTAGGTCTGTTCTCAGCCCTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCCTTTCCCTATTGTTATGGTTCTACTTTATGAAATAGAAG--AAAAAAAAAAATCCAAGGCCAAATACCTCCCTGCAGGGTTCCAGTCGTGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACTAGAAGGTGGTTGCCCAGGTTTATCTTTTTTCGGAATGCCAAGTAAACCAATTAAGAAAACCAAGTAGCATATACCAACGACAGAAAATGTAAACCTGGAGCTATAAAATAAGTAATAGGGTgggt-gtggtggctcacacctgt-aatcccagtgttttgg--gaggctgaggtgggaggattgcttgaggtc--ag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702083 441 - 115148730 TTTAAACATCAGCGTATCAGGCCTCAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACACGAAGGACTCCTTCTTAGGTCTGTTCTCAGCCCTCCCCTGCAGATTCCCTGTCCTGT-ATGA-TACCCCTTTCCCTATTGTTATGGTTCTACTTTATGAAATAGAAG---AAAAAAAAAATCCAAGGCCAAATACCT-CCTGCAGGGTTCCAGTCATGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACTAGAACATGGCTGCCCAGGTTTATCTTTTTTAGGAATGCCAAGTAAACCAATTAAGAAAACCAGGTAGCATATACCAATGACAGAAAACGTAAACCTGGAGCTATAAAATAAGTAATAggctgggt-gtgttggctcacacctgt-aatcccagtattttgg--gaggctgaggtgggaggatctcttgaggtc--ag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87008194 443 +  95678458 TTTAAACATCAGCATATCAGACCTCAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACAGGAAGGACT-CTTCTCAGGTCTGTTCTCAGCTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTTTCCCTATTGTTATGGTTCTACTTTATGGAATAGAAG---AAAAAAAAAATTCAAGGCCAAATACCT-CCTGCATGGGTCCAGCCACGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACTAGAACGTGGTTGCCCAGATTTCTCTTTTCTAGGAATACCAAGAAAACCAATTAAGAAAACCAAGTAGTATACACCAACAACAGAAAATGTAAACCTGGAGCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatcccagtgttttgggagaggctaaagtgggaggattgcttgaggtcag--
i rheMac3.chr10             C 0 I 24
s macFas5.chr10              87664887 441 -  96509753 TTTAAACATCAGCATATCAGACCTCAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACAGGAAGGACT-CTTCTCAGGTCTGTTCTCAGCTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTTTCCCTATTGTTATGGTTCTACTTTATGGAATAGAAG---AAAAAAAAAATTCAAGGCCAAATACCT-CCTGCATGGGTCCAGCCACGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACTAGAACGTGGTTGCCCAGATTTCTCTTTTCTAGGAATACCAAGAAAACCAATTAAGAAAACCAAGTAGTATACACCAACAACAGAAAATGTAAACCTGGAGCTAAAAAATAAGTAATAggctgggt-gtggtggctcacatctgtcaatcccagtgttttgggagaggctaaagtgggaggattgcttgaggtc----
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82491393 441 +  90941950 TTTAAACATCAGCATATCAGACCTCAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACAGGAAGGACT-CTTCTCAGGTCTGTTCTCAGCTCTCCCAGGCAGATTCCCTGTCCTGT-ATGA-TACCTCTTTCCCTATTGTTATGGTTCTACTTTatggaatagaag---aaaaaaaaaattcaaggccaAATACCT-CCTGCATGGGTCCAGTCACGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACTAGAAGGTGGTTGCCCAGGTTTATCTTTTCTAGGAATGCCAAGAAAACCAATTAAGAAAACCAAGTagtatacaccaacaacagaaaaTGTAAACCTGGAgctaaaaaataagtaataggctgggt-gtggtagctcacatctgtcaatcccagtgttttgggagaggctaaagtgggaggattgcttgaggtc----
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24751672 439 +  33263144 TTTAAACATCAGCATATGAGGCCTCAGGCTG-----------------CCCTATCTCCAGACAGGGAAAACAGATACAGGAAGGACT-CTTCTCAGGTCTGTTCTCAGCTCTCCCAGGCAGATTCCCCGTCCTGT-ATGA-TACCTCTTTCCCTACTGTTATGGTTCTACTTTATGGAATAGAAG---AACAAAAAAATTCAAGGCCAAATACCT-CCTGCATGGGTCCAGTCACGCTAAATATTCTTAGTATACATGAAGCACCTGAGTACTAGAAGGTGGTTGCCCAGGTTTATCTTTTCTAGGAATGCCAAGAAAACCAATTAAGAAAACCAAGTAGTATACACCAACAACAGAAAATGTAAACCTGAAGCTAAAAAATAAGTAACAggctgggt-gtggtggctcacatctgtcaatcccaatgttttgg--gaggctgaagtgggaggattgcttgaggtc----
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1997509 432 -   2117846 TTTAAACATCAGCACATCAGGCCTCAGGCTG-----------------CCCTATCTCCAGACAGGAAAAACAGATACAGGAAGGATTCCATCTCAGGTCTGTTCTCAGCCCTCCCCAGAAGATTTCCTGTTCTGT-ATTA-TGCCCCTTTCCCTACTGCTATGGTTCTATTTTATGGAA---------TTAAAAGAAATTCATGGCCAAATACCT-CCTGCAGTGTTCCAGTCATGCTAAATATTCTTGGTATACATGAAGCACCTGAGTACCAGAAGGTGGTTGTCCAGATTTATCTTTTTTAGGAATTCCAAGTAAACCAATTAAGAAAACCAAGTAGTATATATCAACAACAGAAAATGTAAACCTGGAGCTATAA---AAGTAATAGGCTGTGTAAAggtggctcacacctgt-aacaccagtgtttagg--gaggctgagatgagaggatcg-ttgaggtc--ag
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46139668 378 -  69331447 -TTTAGCACCAGCCAGTTGCGCTGCATGCTGCCTGGTTCCTGAGAAAACCCTATCTCCA--CAGGGGAAG-AGACCTGGGTTCGATTCCTCAGAGGGTCCATACTCAGCCCTTCTCTAGAGATTCCCTGTCCTGTCAGGA-TGTCCTCCTCCCTATTGTTATAGTTCTGGATTACGGACCAGACGAAAAAAGAAAAAATTTCCAGCCAAATACCT-CCTGCAGGATACCAGTCATGCTAAATATTCTTCACAAACATAAAGGATCTGGTCATGAGAAAGTGAATAG--AAGTTCATCTGTTTTAGGAGTTCCAAATAAAGCAA-TAGGCAAACCAAG-----TATACTAGTAATTGAAAATGTCAGCCCAGA------------------------GT-------------ATTTGT-AATTTTAGTATT----------------------------------------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857924   0 + 104043685 C

a score=36154.000000
s hg38.chr22_GL383582v2_alt    129379 31 +    162811 gagttcaagaccagcctgggtt--------------------------aaaaaaaat
s panTro4.chr22              40954480 31 +  49737984 gagttcaagaccagcctgggtt--------------------------aaaaaaaat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37494279 37 +  46535552 gagttcaagaccagcctgggtt--------------------aaaaaaaaaaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702524 32 - 115148730 gagttcaagaccagcctgggtt-------------------------aaaaaaaaat
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87665328 28 -  96509753 -agttcaagaccagcctggggg--------------------------ggggggg--
i macFas5.chr10             C 0 I 5
s papAnu2.chr10              82491834 30 +  90941950 -agttcaagaccagcctggggg--------------------------ggggggggg
i papAnu2.chr10             C 0 I 7
s chlSab2.chr19              24752111 30 +  33263144 -agttcaagaccagcctggggg--------------------------ggaaaaaaa
i chlSab2.chr19             C 0 I 2
s calJac3.chrUn_GL286373      1997941 57 -   2117846 aagttcaagacaggcctgagtaacatgatctctaccaaaaaaacaaaaacaaaaaat
i calJac3.chrUn_GL286373    C 0 I 14
e mm10.chr15                 82857924  0 + 104043685 C
e canFam3.chr10              46140046  0 -  69331447 C
e rheMac3.chr10              87008637 24 +  95678458 I

a score=295920.000000
s hg38.chr22_GL383582v2_alt    129410 103 +    162811 tttaaatgcacagtgtcatgaggtgtgcctacagtcccagctgctcaagaggctgaggtaggacgattgcttgaactcaggagttcgaggctgcaacgagcta
s panTro4.chr22              40954511 103 +  49737984 tttaaatgcacagtgtgatgaggtgtgcctacagtcccagctgctcaagaggctgaggtaggacgattgcttgaactcaggagttcgaggctgcaatgagcta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37494316 103 +  46535552 tttaaatgcacagtgtgatgaggtatgcctacagtcccagctgctcaagaggctgaggtgggacgattgcttgaactcaggagttcgaggctgcaatgagcta
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702556 103 - 115148730 ttaaaatgcacagtgtgatgaggtatgcctacagtcccagctgctcaagaggctgaggtgggatgattgcttgaactctggagttcgaggctgcaatgagcta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87008661 103 +  95678458 ttaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta
i rheMac3.chr10             I 24 C 0
s macFas5.chr10              87665361 103 -  96509753 ttaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta
i macFas5.chr10             I 5 C 0
s papAnu2.chr10              82491871 103 +  90941950 ttaaaatacacagtGTGATGaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggagttcaagattgcaatgagcta
i papAnu2.chr10             I 7 C 0
s chlSab2.chr19              24752143 103 +  33263144 ttaaaatacacagtgtgatgaggtatgcctatagtcccagctgctcaagaggctgaggtaggaggactgcttgaactcaggaattcaagattgcaatgagcta
i chlSab2.chr19             I 2 C 0
s calJac3.chrUn_GL286373      1998012 103 -   2117846 ttttaatgcacagtgtgatgaggtgtgactacagtctcagctgctcaggaggctgagatgggaggattgcttgaactcaggagttcgaggttgcaatgagcta
i calJac3.chrUn_GL286373    I 14 C 0
s canFam3.chr10              46140046  19 -  69331447 -----------AGCATTATAA-------------------------------------------------------------------------AATAAGCTA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82857924   0 + 104043685 C

a score=152235.000000
s hg38.chr22_GL383582v2_alt    129513 102 +    162811 tgaatgtgccaatgtgctccaccctgggtgacagtaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaG
s panTro4.chr22              40954614  67 +  49737984 tgaatgtgccaatgtgctccaccctgggtgacagtaaccctgtctc-----------------------------------aaaaaaaaaaaaaaaaaaaaG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37494419  83 +  46535552 tgaatgtgccaatgtgctccaccctgggtgacagtaaccctgtctc-------------------ttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAGAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702659  88 - 115148730 tgaatgtgccaatgtgctccaccctgggtgacagtaaccctgtctc--------------TTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87008764  61 +  95678458 tgaatgtgccaatgtgctccaccctgggtgacagtaaccttgtctc--------------tt---------------------------aaaaaaaaaaaTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87665464  61 -  96509753 tgaatgtgccaatgtgctccaccctgggtgacagtaaccttgtctc--------------tt---------------------------aaaaaaaaaaaTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82491974  62 +  90941950 tgaaTGTGCCAATGtgctccaccctgggtgacagtaaccttgtctc--------------tt--------------------------aaaaaaaaaaaatg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24752246  70 +  33263144 tgaatgtgccaatgtgctccaccctgggtgacaggaaccttgtctc--------------tta------------------aaaaaaaaaaaaaaaaaaaTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1998115  63 -   2117846 taaatgtgccaatgtgttccaccctgggtgacagagaccctgtctc--------------ta-------------------------aaacaacaaaaaCTA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82857924   0 + 104043685 C
e canFam3.chr10              46140065   0 -  69331447 C

a score=670046.000000
s hg38.chr22_GL383582v2_alt    129615 196 +    162811 CTAATAGAGATAATTCCAATTTTATCCCATCATC-TTAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTGTTT-------AAATGAATACAAATAG---TAAGGAAAATCTGATACCTCAAAGG-AATAAGTCACCTA--AGGAACTTGCATACACACTCTAAAAAAGAggctg
s panTro4.chr22              40954681 196 +  49737984 CTAATAGAGATAATTCCAATTTTATCCCATCATC-TTAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTGTTT-------AAATGAATACAAATAG---TAAGGAAAATCTGATACCCCAAAGG-AATAAGTCACCTA--AGGAACTTGCATACACACTCTAAAAAAGAggctg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37494502 192 +  46535552 CTAATTGAGATAATTCCAATTTTATCCCATCATC-TTAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTGTTT-------AAATGAATACAAAT-------AGGAAAATCTGATACCTCAAAGG-AATAAGTCACCTA--AGGAACTTGCATACATACTCTAAAAAAGAggctg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702747 191 - 115148730 CTAATAGAGATAATTCCAATTTTATCCCATCATCTTTAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAG------TAAGTGTCTCAATTCCTTCGTTT-------AAATGAATACAAATAG---TAAGGAAAATCTGATACCCCAAAGG-AATAAGTCACCTA--AGGAACTTGCATACATACTCTAAAAAAGAGGCTG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87008825 200 +  95678458 CTAACAGAGATAATTCCAATGTTATCCTATCATCTTAAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTGTTT-------AAATGAATACAAATAGTAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--AGGAACTTGCATACATACTCTAAAAAAGAAgctg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87665525 200 -  96509753 CTAACAGAGATAATTCCAATGTTATCCTATCATCTTAAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTGTTT-------AAATGAATACAAATAGTAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--AGGAACTTGCATACATACTCTAAAAAAGAAgctg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82492036 200 +  90941950 ctaacagagATAATTCCAATGTTATCccatcatcttaaaaa----aaagcatCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTgttt-------aaatgaatacaaatagtAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--AGGAACTTGCATACATACTctaaaaaagaggctg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24752316 200 +  33263144 CTAACAGAGATAATTCCAATGTTATCCCATCATCTTAAAAA----AAAGCATCAGTGTAGTCAGTTTTAAAGCACTGTGATTAGTAATAATAAGTGCCTGAATTCCTTTGTTT-------AAATGAATACAAATAGTAATAAGGAAAATCTGATGCCCCAAAGG-AGTAAGTCACCTA--AGGAACTTGCATACATACTCTAAAAAAGAggctg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1998178 211 -   2117846 CTAACAGAGATAATTCCAATGCTATCCCATCATCTTAAAAAAAGGAAAGCATCAATGTAGTTAGTTTTAAGGCACTGTGATTAGTGATAGTAAATGCCTGAATTCCTTTGTTTAAATGAAAAATGAATACAAACAGTAGTAAGGAAAATTTGATACCCCAAAGG-AGTAAGTCACCCA--AGGAACTTGCATACATACTCTAAAAAAGAggctg
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46140065 199 -  69331447 CTAATAGAGATCATTCCAAAACTATCCTATCATTTT--AAA----AAAGCA--AATCTAATTAGTTTTGAAGCATCGTGATTAATAATGACAAATGCCTGATTTTCCTTGTTT-------GAATGAATACAGACTTGGATAAAGAAAATTTGAGACTCCAAAGGAAGTCAGTTACCCATGAGGAATTTGTATACGCACTCTGAAAACAGGTCTG
i canFam3.chr10             C 0 I 34
e mm10.chr15                 82857924   0 + 104043685 C

a score=930304.000000
s hg38.chr22_GL383582v2_alt    129811 324 +    162811 ggcacagtggctcacccctgtaatccctgaactttgggaggtcaaggcgggcagatcacttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccctatctttataaaaaatacaaaaattagccaggcatggtgatgcgtgcctgtagtcccagcacctcggggggctgaggcaggaggatcgcctgagcctcggaggcagaggttgcagtgagcagagatcgcgccactgccctccagcctgggcaacaaagcgagattccgtctcaataaataaataa----aaaaGAGGCCTACCGATGTACTTCCCATCCATAA
s panTro4.chr22              40954877 324 +  49737984 ggcacagtggctcacccctgtaatccctgaactttgggaggtcaaggcgggcagatcacttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccctatctttataaaaaatacaaaaattagccaggcatggtgatgcgtgcctgtagtcccagcacctcggggggctgaggcaggaggatcgcctgagcctcggaggcagaggttgcagtgaacagagatcgtgccactgccctccagcctgggcaacaaagcgagattccgtctcaataaataaataa----aaaaGAGGCCTACCGATGTACTTCCCATCCATAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37494694 320 +  46535552 ggcacagtggctcacacctgtaatctctgaactttgggaggtcgaggcaggcagatcgcttgggctcaggagttcaagaccagcctgggcaacgtggcgaaaccctacctctataaaaaatacaaaaattagccaggcgtggtgatgcatgcctgtagccccagcaacttggggggctgaggcaggaggatcgcctgggcctgggaggcagaggttgcagtgagcagagatcgcaccactgccctccagcctgggcaacaaagtgagattctgtctcaataaataaaT--------AAGAGGCCTATCGATGTACTTCCCATCCATAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106702938 317 - 115148730 Gg----gtggctcacacctgtaatccctgaacttcgggaggtcgaggcaggcagatcgcttgggctcaggagttcgagaccagcctgggcaacatggcgaaaccctatctctataaaaaatacaaaaattagccaagcatggtgatgcgtgcctgtactcccagcaactcggggggctgaggcaggaggatcgcctgagcctgggaggcagaggttgcagtgagcagagatcacgccactgccctccagcccgggcaacaaagcgagattctgtctcaataaataaat-------aaagaaGCCTACTGGTGTACTTCCTATCCATAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87009025 324 +  95678458 ggcacagtggctcacacctgtaattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttc-agaccagcctgggcaacacggcgaaaccctatctctataaaaaatacaaaaattagccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagccc-ggaggcagaggttgcagtgagctgagattgcgccactgccctccagcctaggcaacaaagcgagattctgtctcaataaataaagaaat--aaaaGAGGTCTACCAATGTACTTCCCATCCATAC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87665725 325 -  96509753 ggcacagtggctcacacctgtaattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacggcgaaaccctatctctataaaaaatacaaaaattagccgggcatggtgatgcgtgcctgcagtcccagcaactcggggggttgaggcgggaggatcgcctgagccc-ggaggcagaggttgcagtgagctgagattgcgccactgccctccagcctaggcaacaaagcgagattctgtctcaataaataaagaaat--aaaaGAGGTCTACCAATGTACTTCCCATCCATAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82492236 328 +  90941950 ggcacagtgactcacacctgtaattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacagcgaaaccctatctctataaaaaatacaaaaattagccgggcatggtgatgtgtgcctgcagtcccagcaactcggggggttgaggcaggaggatcgcctgagcccgggaggcagaggttgcagtgagctgagattgcgccactgccctccagcctgggcaacaaagcgagattctgtctcaataaataaagaaataaaaaagaggtcTACCAATGTACTTCCCATCCATAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24752516 328 +  33263144 ggcacagtggctcacacctgtaattcctgaactttgggaggtcgaggcaggcatatggcttgggctcaggagttcgagaccagcctgggcaacacggcgaaaccctctctctataaaaaatacaaaaattagccgggcatggtgatgcgtgcctgtagtcccagcaactcggggggctgaggcggaaggatcgcctgagcctgggaggcagaggatgcagtgagctcagattgcgccactgccctccagcctgggcaacaaagcgagattctgtctcaataaataaagaaataaaaaaGAGGTCTACCAATGTACTTCCCATCCATAC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1998389 322 -   2117846 ggcacagtggctcacacctgtaactccagcactttgggaggctgaggcaaggggatcgcttgggcttgggaatttgagacccgcctgggcaacatggagaaaccctatctctataagaaatacaacaattagccaggcgtagtgatgcatgcctgcagtcccagcaactcagggggttaagactggaggatcatctgagcccggaaggcaaaggtttcagtgagctgaaatcccaccactgctctccagcctggtcaacaaagcgatattctgtctcaagaaataaat------aaaaaaGATCTACCAATGTACTTCCTGTTCATAC
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82857924   0 + 104043685 C
e canFam3.chr10              46140264  34 -  69331447 I

a score=178526.000000
s hg38.chr22_GL383582v2_alt    130135 64 +    162811 TGACTCTCCCTTTCC----TGTTTTTCTCCTATATTCCTAACTTTCTGAACAGTTTCAGAAGGGCTGT
s panTro4.chr22              40955201 62 +  49737984 TGACTCTCCCTTTCC----TGTTTTTCTCCTATATTCCTAACTTTC--AACAGTTTCAGAAGGGCTGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37495014 64 +  46535552 TGACTCTCCCTTTCC----TGTTTTTCTCCTGTATTCCTAACTTTCTGAACAGTTTCAGAAGGGCTGT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106703255 64 - 115148730 TGACTCTCCCTTTCC----TGTTTTTCTCCTATATTCCTAACTTTCTGAACAGTTTCAGAAGTGCTGT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87009349 59 +  95678458 TAACTCTCCCTTTCCTGTTTGTTTTTCTCTTATATTCCT---------AACAGTTTCAGGAGGGCTGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87666050 59 -  96509753 TAACTCTCCCTTTCCTGTTTGTTTTTCTCTTATATTCCT---------AACAGTTTCAGGAGGGCTGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82492564 59 +  90941950 TAACTCTccctttcctgtttgtttttctcttatattccT---------AACAGTTTCAGGAGGGCTGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24752844 59 +  33263144 TAACTCTCCCTTTCCTGTTTGTTTTTCTCTTATATTCCT---------AACAGTTTCAGGAGGGCTGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1998711 63 -   2117846 TGACTCTCCCCTTCC----TGTTTTTCTCTCATATTCCTAACTTTCT-AACAGTTTCAGAAGGGCTGT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46140298 62 -  69331447 TGACT-TCCCTTTTT----TGATCTTCTCCTGTTCTCCTAGCTTTCTGAATGGTTTCAGG-GAGCTGT
i canFam3.chr10             I 34 C 0
e mm10.chr15                 82857924  0 + 104043685 C

a score=744517.000000
s hg38.chr22_GL383582v2_alt    130199 218 +    162811 GGAGGTGTATTAGTGAGGTCCAGAACTCTGTGCCTAA------ACATTCCAG-AGTCCATGTGCCGACCTCACAAACTCACTC--ATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCCTCTTATAGAAAACCAACATTGGCTTTCTCTGTCCTTCTT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAttctc--------------ttttt
s panTro4.chr22              40955263 218 +  49737984 GGAGGTGTATTAGTGAGGTCCAGAACTCTGTGCCTAA------ACATTCCAG-AGTCCATGTGCCGACCTCACAAACTCACTC--ATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCCTCTTATAGAAAACCAACATTGGCTTTCTCTGTCCTTCTT-CCTCCATATATCCAACAACATCCCACTTCCCAATCCAttctc--------------ttttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37495078 219 +  46535552 GGAGGTGTATTAGTGAGGTCCAGAACTCTGTGCCTAT------ACATTCCAG-AATCCATGTGCCGACCTCACAAACTCACTCA-ATAACCAGTTGCAGACTTGTTCTCCCCATCCTA--TTAGAGGGCTGATGACCTTGCCCTCTTATAGAAAACCAACATTGGCTTTCTCTGTCCTTCTT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAttctc--------------ttttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106703319 218 - 115148730 GGAGGTGTATTAGTGAGGTCCAGAACTCTGTGCCTAT------AAATTCCAG-AGTTCATGTGTCCACCTCACAAACTCACTC--ATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTAAAGGGCTGATGACCTTGCCCTCTTATAGAAAACTAACATTGGCTTTCTCTGTCCTTCTT-CCTCCATATGTCCAACAACATCTCACTTCCCAACCCAttctc--------------ttttt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87009408 220 +  95678458 GGAGGTGTCTTAGTGAGGTACAGAACTCTGTGCCTAT------ACATTCCAG-AGTCCATGTGCCAACCTCACAAACTCACTCACATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCCTCTTACAGAAAACCAACACTGGCTTTCTCTGTCCTCCTT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAttctc--------------tttct
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87666109 220 -  96509753 GGAGGTGTCTTAGTGAGGTACAGAACTCTGTGCCTAT------ACATTCCAG-AGTCCATGTGCCAACCTCACAAACTCACTCACATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTCGAAGGTTGATGACCTTGCCCTCTTACAGAAAACCAACACTGGCTTTCTCTGTCCTCCTT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCAttctc--------------tttct
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82492623 220 +  90941950 GGAGGTGTCTTAGTGAGGTACAGAACTCTGTGCCTAT------ACATTCCAG-AGTCCATGTGCCAACCTCACAAACTCACTCACATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTGGAAGGTTGATGACCTTGCCCTCTTACAGAAAACCAACACTGGCTTTCTCTGTCCTCCTT-CCTCCATATGTCCAACAACATCCCACTTCCCAATCCATTCTC--------------TTTTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24752903 220 +  33263144 GGAGGTGTCTTAGTGAAGTACAGAACTCTGTGCCTAT------ACATTCCAG-AGTCCATGTGCCAACCTCACAAACTCACTCACATAACCAGCTGCAGACTTGTTCTCCCCATCCTA--TTGGAAGGTTGATGAGCTTGCCCTCTTACAGAAAACCAACACTGGCTTTCTCTGTCCTCCTT-CCTCCATATGTCCAACAACATTCCACTTCCCAATCCAttctc--------------ttttt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1998774 230 -   2117846 GGAGGTATATTAGCAAGGTCCAGAACTCTGTGCCTAT------ACATACCAA-AGTCCATATGCTGACCTCACAAACTCACTC--ATAACCAGCTGCAGACTTTTTATCCTCATTCTG--TTGGAGGGCTGATGACCTTGCCCTCTCATAGAAAACCAACACTGGCTTTCTCTGTCCTTCTT-CCTCC--ATGTCCAGCATCATCCCACTTCCCAATCCATTCTCTGCtttttttttttttttt
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82857924 181 + 104043685 AAAAGAGTAGTTATAAGGTCCAGGACTTTGAGTCTAC------ACATTCCAG-----------------------------TC------CCAGTTGTGGAC-TGTTCTCTCCAGCCTGGTTTGGAAAGCTGGTGACCT--CACTTTTATTGAAAACTAGTATTAACTTTTGTTGTCTTTCTG-TCATCA----TCTAAGAGCATTATTCTCTCCAATGCATTCGG--------------ttttt
i mm10.chr15                C 0 I 764
s canFam3.chr10              46140360 215 -  69331447 GGAGTTGCACAAGCGAGGTCCTGAACTTATTGTCTGTATGGTCACAGCCTAGAAGTCCACACGCCCACCTCATGG---CAATCACAGCTTCTGCCTGGGGCCCG--CCCTCCACCCCA--TCACAGGCC--ACGACCTTGCCATCTTATAGTAAAC----AGCAGCTTCCTTCGTCCCCCTTCCCTTCACATGCCCAACGCCATCTCACTTTCCAATCCACTCTT--------------CTC--
i canFam3.chr10             C 0 C 0

a score=163396.000000
s hg38.chr22_GL383582v2_alt    130417 63 +    162811 tggaaagagagtctcactctgttgcccaggctggagtgcagtggcatgaccacaggctcactg
s panTro4.chr22              40955481 63 +  49737984 tggaaagagagtctcactctgttgcccaggctggagtgcagtggcatgaccacaggctcactg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37495297 63 +  46535552 tggaaagagagtctcactctgttgcccaggctggagtgcagtggcacgaccatgggctcactg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106703537 63 - 115148730 tggaaagagtgtctcactctgttgcccaggctggagtgcagtggcacgaccataggctcactg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87009628 61 +  95678458 tggaaaga--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87666329 61 -  96509753 tggaaaga--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgtca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82492843 61 +  90941950 TGGAAaga--gtctcacagtgttgcccaggctggagtacagtggcacaaccatgggctcacca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24753123 61 +  33263144 tggaaaga--gtctcactgtgttgcccaggctggagtacagtggcacaaccacgggctcgcca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1999004 59 -   2117846 tggaga----gtctcactctgttgcccaggctggaaatcagtggcatgatcacaggctcactg
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46140575 36 -  69331447 --------------CACAAAGTTCTCCAAACTG-------------TCAATACAGGCTCCTTG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82858105 764 + 104043685 I

a score=354322.000000
s hg38.chr22_GL383582v2_alt    130480 119 +    162811 cggcctcaactcccagctcaggcaatcctcctgcctcagcctcccaagtagctgggaccacaggcatgggacccctggctaatttttaaaaaataattgggactatgg----ctaatttttat
s panTro4.chr22              40955544 119 +  49737984 cggcctcaacttccagctcaggcaatcctcctgcctcagcctcccaagtagctgggaccacaggcatgggacccctggctaatttttaaaaaataattgggaccatgg----ctaatttttat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37495360 115 +  46535552 cagcctcaactcccagctcaggcaatcctcctgccttagcctcccaagtagctgggaccacaggcatgggacccctggctaatttttaaaaaataattgggaccatgg--------tttttat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106703600 119 - 115148730 tagcctcaactcccagctcaggcaatcctcctgccttagcctcccaagtagctgggactatgggcatgggacccctggctaatttttaaaaaataattggggccatgg----ttaatttttat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87009689 123 +  95678458 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcacggaacccccggctaatttttaaaaaataattgggaccatggttggttaatttttat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87666390 123 -  96509753 cagcctcaactcccagttcaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcacggaacccccggctaatttttaaaaaataattgggaccatggttggttaatttttat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82492904 123 +  90941950 cagcctcaactcCCAGTTCaggcaatactcctgcctcagcctcccaggtagctgggaccacaggcatggaacccctggctaatttttaaaacataattgggACCATGGttggttaatttttat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24753184 123 +  33263144 cagcctcaactcccagttcaggtaatactcctgcctcagcctcccaagtagctgggaccacaggcacggaacccctggctaatttttaaaaaataattgggaccatggttggttaatttttat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1999063 123 -   2117846 cagcctcaaatcccagctcaagcaatcctcgtgcctcagcctcccaagtagctgggaccacaggcatgggccccctggctaattttaaaaaaataattgggaccataaatggccaatttttat
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82858105 764 + 104043685 I
e canFam3.chr10              46140611   0 -  69331447 C

a score=717270.000000
s hg38.chr22_GL383582v2_alt    130599 305 +    162811 aattt-cttaaaaatagagac-agagtctcactgtgctgtccaggctggtctcaaactcctgggctcaagccatcctgctgtttcaacctcccaaagtgctagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCA----------------TGATTTTCTGCTTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ACATTGACAAT---GATGCATCTAGTTATAG--CCTGTGTAAGggatattccctgtttg-cccccacagcctctcctcaccc--atctccaccctactctatgccctagaacggacaatgg
s panTro4.chr22              40955663 305 +  49737984 aattt-cttaaaaatagagac-agagtctcactgtgctgtccaggctggtctcaaactcctgggctcaagccatcctgctgtttcaacctcccaaagtgctagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCA----------------TGATTTTCTGCTTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCATCTAGTTATAG--CCTGTGTAAGggatattccctgtttg-cccccacagcctctcctcaccc--atctccaccctactctatgccctagaagggacaatgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37495475 307 +  46535552 aattt-ttaaaaaatagacac-gcagtctcactattctgtccaggctggtctcaaactcctgggttcaagcgatcctgctgtttcaacctcccaaagtgctagaattcagccattgtgcctggccCCAGCTAATTTTTTCATCCTCTGTCA----------------TGATTTTCTGTTTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCATCTAGTTATAGCCCCTGtgtgagagatattccctctttg-cccccacagcctcttctcaccc--atctccaccctactctgtgccctagaagggacagtgg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106703719 210 - 115148730 aattt-tttaaaaatagagac-agagtctcactatgctgtccaggctggtctcaaactcctgggctca------------------------------------------------------------------------------------------------------------------TCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCGTCTAGTTAGAGCCCCTGtgtgagggatattccctgtttgccccccacagcctctcctcaccc--atctccaccatactctatgccctagaagggacaatgg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87009812 293 +  95678458 agttt-taaaaaaata-agag-acagtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCA----------------TGATTTTC---TTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCATCTAGCTATAGCCCTTGtgtgggggatattccctgctcg-cccccacagcctctcttcaccc------------tactctgtgccctagaagtgacactgg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87666513 293 -  96509753 agttt-taaaaaaata-agag-acagtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccCCAGCTAATTTTTTCATCCTCTTTCA----------------TGATTTTC---TTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtgggggatattccctgctcg-cccccacagcctctcttcaccc------------tactctgtgccctagaagtgacactgg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82493027 293 +  90941950 agttt-taaaaaaata-agag-acagtctcactaagctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaaagtgttataattcagccactgcgcctgaccccagctaattttttcatccTCTTTCA----------------TGATTTTC---TTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCATCTAGTTATAGCCCTTGTGTGGGGGATATTCCCTGCTCG-CCCCCACAGCCTCTCTTCACCC------------TACTCTGTGCCCTAGAAGTGACACTGG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24753307 293 +  33263144 agttt-taaaaaaata-agag-acagtctcactatgctgtccaggctggtttcaaactcctgggctcatgtgatcctgctgtttcaacctcccaacgtgttataattcagccactgtgcctgaccCCAGCTAATTTTTTCATCCTCTTTCA----------------TGATTTTC---TTATTCTCCTTCTTTG---------CCTTTAAA-TCCTCAAG--ATATTGACAAT---GATGCATCTAGTTATAGCCCTTGtgtgggggatattccctgctca-cccccacagcctctcttcatcc------------tactctgtgccctagaagtgacactgg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1999186 322 -   2117846 aatttaaaaaaaaatagagacaagagtctcactatgctgcccaggctggtctcaaacttctgggttcaagcgatcatgctgtttcaacctcccaaagtgctagaattcagccactgtacttgg-ccCAGCTAATTTTTTCATCCTCTTTCATGTCAGGTTTAACCACTGATTTTCTGCTTATTCCCCTTCTTTG---------CCTTTAAATTCCTCAAGATATATTGACAAT---GATGCATCTAGTTATAGCCCCTGtgtgggggatat----tgtttg-cccccaca-cccatcctcaccc--atctccacgctactctatgccctagatggggcactgg
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46140611 218 -  69331447 ----------------------AATATCT--------------------TTTCAAGCACCTG------------CTTCCTCTTTCA--CTCC----------AGGTTTAACCAG-----------------------------------------------------TGTTTTTCTGCTCCTTCTCTTGCCTTGGAAAAAAAACTCTTCAC-TTCTCAAG--ATAAAAACACTCCCTACACATCTAGTCATGGCCTCTGCCTGGTGGAT-TATTCTGTTTG-CCCTC-CAGCTTCCTTTCTCCCCCATCTCCGCCCTGCTCTACATCCTGCAAGGGGGCACAG
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82858105 764 + 104043685 I

a score=3593060.000000
s hg38.chr22_GL383582v2_alt    130904 1053 +    162811  
s panTro4.chr22              40955968 1053 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37495782 1060 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106703929 1052 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87010105 1055 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87666806 1055 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82493320 1054 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24753600 1055 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      1999508 1050 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82858869  923 + 104043685  
i mm10.chr15                I 764 I 18
s canFam3.chr10              46140829  966 -  69331447  
i canFam3.chr10             C 0 C 0

a score=7990.000000
s hg38.chr22_GL383582v2_alt    131957 5 +    162811 ccata
s panTro4.chr22              40957021 5 +  49737984 ccata
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37496842 5 +  46535552 ccata
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106704981 5 - 115148730 CCATA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87011160 5 +  95678458 CCACG
i rheMac3.chr10             C 0 C 0
s calJac3.chrUn_GL286373      2000558 5 -   2117846 ccata
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82859810 5 + 104043685 CCATG
i mm10.chr15                I 18 I 51
e canFam3.chr10              46141795 0 -  69331447 C
e chlSab2.chr19              24754655 0 +  33263144 C
e papAnu2.chr10              82494374 0 +  90941950 C
e macFas5.chr10              87667861 0 -  96509753 C

a score=5987.000000
s hg38.chr22_GL383582v2_alt    131962 10 +    162811 tggcaaaggg
s panTro4.chr22              40957026 10 +  49737984 tggcaaaggg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37496847 10 +  46535552 tggcaaaggt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106704986 10 - 115148730 TGGCAAAGGt
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      2000563 10 -   2117846 cagcagagag
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82859866 10 + 104043685 AGACAACATG
i mm10.chr15                I 51 C 0
e canFam3.chr10              46141795  0 -  69331447 C
e chlSab2.chr19              24754655  0 +  33263144 C
e papAnu2.chr10              82494374  0 +  90941950 C
e macFas5.chr10              87667861  0 -  96509753 C
e rheMac3.chr10              87011165  0 +  95678458 C

a score=29573.000000
s hg38.chr22_GL383582v2_alt    131972 102 +    162811 ttttttttttt-----------ttttttttttttttttgagacggagtctc-gttctgttgcccaggctggagtgcagtggcgatatctc-ggctcactgc-aag----ctccgcctccc
s panTro4.chr22              40957036  89 +  49737984 ------------------------ttttttttttttttgagacggagtctc-gctctgttgcccaggctggagtgcagtggcgatatctc-ggctcactgc-aag----ctccgcctccc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37496857  96 +  46535552 ------tttct-----------ttttttttttttttttgagacagagtctc-actctgtcgcccaggctggagtgcagtggcaatatctc-ggctcactgc-aag----ctccgcctcct
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106704996  94 - 115148730 ---------tt-----------ttttttttttttttttgggacagagtctt-gctctgtcgctaaggctggagggcagtggcgatatctc-ggctcactgcaaag----ctctgcctccc
i nomLeu3.chr7b             C 0 C 0
s mm10.chr15                 82859876  86 + 104043685 -TATTTATTCTAACAAAATCAAtttatttttacttctgggaacaaggtctctattgtaatgcccaggctgg---------------cctcaaactcacagc-a-----------------
i mm10.chr15                C 0 C 0
s canFam3.chr10              46141795  59 -  69331447 ---------------------------------tcctagagac-----ccc-agattgagtcccacgttg---------------------ggctccctgc-atggagcctgcttctccc
i canFam3.chr10             C 0 I 112
e calJac3.chrUn_GL286373      2000573   0 -   2117846 C
e chlSab2.chr19              24754655   0 +  33263144 C
e papAnu2.chr10              82494374   0 +  90941950 C
e macFas5.chr10              87667861   0 -  96509753 C
e rheMac3.chr10              87011165   0 +  95678458 C

a score=5119.000000
s hg38.chr22_GL383582v2_alt    132074 11 +    162811 gggttcacgtc
s panTro4.chr22              40957125 11 +  49737984 gggttcacatc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37496953 11 +  46535552 gggttcacgcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106705090 11 - 115148730 aggttcacgcc
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82859962  0 + 104043685 C
e canFam3.chr10              46141854 112 -  69331447 I
e calJac3.chrUn_GL286373      2000573  0 -   2117846 C
e chlSab2.chr19              24754655  0 +  33263144 C
e papAnu2.chr10              82494374  0 +  90941950 C
e macFas5.chr10              87667861  0 -  96509753 C
e rheMac3.chr10              87011165  0 +  95678458 C

a score=26272.000000
s hg38.chr22_GL383582v2_alt    132085 71 +    162811 attctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccgtgcctggctgattttttgt
s panTro4.chr22              40957136 71 +  49737984 attctcctgcctcagcctcccaagtagctgggactacaggcgcccaccaccgtgcctggctaattttttgt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37496964 71 +  46535552 attctcctgcttcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaattctttgt
i ponAbe2.chr22             C 0 C 0
s mm10.chr15                 82859962 68 + 104043685 atcctcctgcctcagcattttgagta-ctgagattataagta--agccaccacatctgactGAAttttttt
i mm10.chr15                C 0 I 117
e canFam3.chr10              46141854 112 -  69331447 I
e calJac3.chrUn_GL286373      2000573  0 -   2117846 C
e chlSab2.chr19              24754655  0 +  33263144 C
e papAnu2.chr10              82494374  0 +  90941950 C
e macFas5.chr10              87667861  0 -  96509753 C
e rheMac3.chr10              87011165  0 +  95678458 C
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=22296.000000
s hg38.chr22_GL383582v2_alt    132156 85 +    162811 atttttagtagagacagggtttcaccgtgttagccaggatggtctcga-tctcctgacctcatgatccgcccgcctcagcctccca
s panTro4.chr22              40957207 86 +  49737984 atttttagtagagacagggtttcaccgtgttagccaggatggtctctattctcctgacctcatgatccgcccgcctcggcctccca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497035 85 +  46535552 atttttagtagagacggggtttcaccgtgttagccaggatggtctcaa-tctcctgacctcgtgatccgcccgcctcggcctccca
i ponAbe2.chr22             C 0 C 0
e mm10.chr15                 82860030 117 + 104043685 I
e canFam3.chr10              46141854 112 -  69331447 I
e calJac3.chrUn_GL286373      2000573  0 -   2117846 C
e chlSab2.chr19              24754655  0 +  33263144 C
e papAnu2.chr10              82494374  0 +  90941950 C
e macFas5.chr10              87667861  0 -  96509753 C
e rheMac3.chr10              87011165  0 +  95678458 C
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=10597.000000
s hg38.chr22_GL383582v2_alt    132241 39 +    162811 aagtgctgggattacaggcatgagccaccgcgcccggcc
s panTro4.chr22              40957293 39 +  49737984 aagtgctgggattacaggcgtgagccaccgcgcccggcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497120 39 +  46535552 aagtgctgggattacaggcgtgagccaccgcacccggcc
i ponAbe2.chr22             C 0 C 0
s canFam3.chr10              46141966 31 -  69331447 AGGTGCTGGG-CTCTAGTACTTATCAACCACG-------
i canFam3.chr10             I 112 C 0
e mm10.chr15                 82860030 117 + 104043685 I
e calJac3.chrUn_GL286373      2000573  0 -   2117846 C
e chlSab2.chr19              24754655  0 +  33263144 C
e papAnu2.chr10              82494374  0 +  90941950 C
e macFas5.chr10              87667861  0 -  96509753 C
e rheMac3.chr10              87011165  0 +  95678458 C
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=5414.000000
s hg38.chr22_GL383582v2_alt    132280 5 +    162811 ccata
s panTro4.chr22              40957332 5 +  49737984 ccata
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497159 5 +  46535552 ccata
i ponAbe2.chr22             C 0 C 0
s macFas5.chr10              87667861 5 -  96509753 ccacg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82494374 5 +  90941950 CCACA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24754655 5 +  33263144 ccaca
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82860030 117 + 104043685 I
e canFam3.chr10              46141997 0 -  69331447 C
e calJac3.chrUn_GL286373      2000573 0 -   2117846 C
e rheMac3.chr10              87011165 0 +  95678458 C
e nomLeu3.chr7b             106705101 0 - 115148730 C

a score=22617.000000
s hg38.chr22_GL383582v2_alt    132285 10 +    162811 tggcaaaggt
s panTro4.chr22              40957337 10 +  49737984 tggcaaaggt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497164 10 +  46535552 tggcaaaggt
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87011165 10 +  95678458 TGGCAAAGGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87667866 10 -  96509753 tggcaaaggt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82494379 10 +  90941950 TGGCAAAGGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24754660 10 +  33263144 tggcaaaggt
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46141997 10 -  69331447 TGGTGGTGGT
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82860030 117 + 104043685 I
e calJac3.chrUn_GL286373      2000573  0 -   2117846 C
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=63623.000000
s hg38.chr22_GL383582v2_alt    132295 27 +    162811 tttaatgaccatgcagagacagag--caa
s panTro4.chr22              40957347 27 +  49737984 tttaatgaccatgcagagacagag--caa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497174 27 +  46535552 tttaatgaccatgcagagacagag--caa
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87011175 27 +  95678458 TTTAATGACCATGAAGAGACAGAG--CAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87667876 27 -  96509753 tttaatgaccatgaagagacagag--caa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82494389 27 +  90941950 TTTAATGACCATGAAGAGACAGAG--TAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24754670 27 +  33263144 tttaatgcccatgaagagatagag--caa
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2000573 28 -   2117846 tttaatgaccatgcagaatcagag-acaa
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46142007 28 -  69331447 TCTCATG-CTATGCAGGGCCAGAAGACAA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82860030 117 + 104043685 I
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=1153179.000000
s hg38.chr22_GL383582v2_alt    132322 487 +    162811  
s panTro4.chr22              40957374 487 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497201 479 +  46535552  
i ponAbe2.chr22             C 0 I 40
s rheMac3.chr10              87011202 477 +  95678458  
i rheMac3.chr10             C 0 I 120
s macFas5.chr10              87667903 477 -  96509753  
i macFas5.chr10             C 0 I 40
s papAnu2.chr10              82494416 480 +  90941950  
i papAnu2.chr10             C 0 I 40
s chlSab2.chr19              24754697 472 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2000601 482 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82860147 621 + 104043685  
i mm10.chr15                I 117 I 2
s canFam3.chr10              46142035 512 -  69331447  
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=286889.000000
s hg38.chr22_GL383582v2_alt    132809 108 +    162811 CTCAGCCCCCTTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACTTGGAGC---CTTTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCACATGAGATCATATGGT
s panTro4.chr22              40957861 108 +  49737984 CTCAGCCCCCTTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACTTGGAGC---CTTTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCACATGAGATCATATGGT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497720 111 +  46535552 CTCAGCCCCCTTTGTGCCATCGGCCCACTCTCACCTTGGTCTCAACTTGGAGCCTTCTTTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCATGTGAGATCACATAGT
i ponAbe2.chr22             I 40 C 0
s rheMac3.chr10              87011799 111 +  95678458 CTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACTTGGAGCCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCATGTGAGATCATATAGT
i rheMac3.chr10             I 120 C 0
s macFas5.chr10              87668420 111 -  96509753 CTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACTTGGAGCCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCATGTGAGATCATATAGT
i macFas5.chr10             I 40 C 0
s papAnu2.chr10              82494936 111 +  90941950 CTCAGCCCTGTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACTTGGAGCCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCATGTGAGATCATATAGT
i papAnu2.chr10             I 40 C 0
s chlSab2.chr19              24755169 111 +  33263144 CTCCACCCTCTTTGTGCCATCAGCCCACTCTCACCTTGGTCTCAACTTGGAGCCTTCTCTTAAGCATCCCCAGGCCCATAAATTCCTTCTTGCCATGTGAGATCATATAGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2001083 111 -   2117846 CTCAGCCCCCTCTGTGCCACTGGCCCACTCTCACCTTGATCTCAGTTTGGAGCCTTCTCTCACGCATCCCCAGGACCATAAATCCCTTCTTGCCATGTGAGGTCACAGAGT
i calJac3.chrUn_GL286373    C 0 I 304
s mm10.chr15                 82860770  89 + 104043685 CAAAAATGCCTCTGAGCCATTA----------CCCTTCGTAT------------TTCTCTGAAACATCCTTGAGTCCAGAAATGCCCTCCTACCCTACCAGGTCATGTGGG
i mm10.chr15                I 2 C 0
s canFam3.chr10              46142547  92 -  69331447 TTTGGTCCCCTCCAGGCCACCG------------CCTGTTCTCATCACAAAGCCTTCTCTGAAGCATCCCTGGGTCCAAACATTCCTTCTCACTTTGTCAGTCC-------
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=540001.000000
s hg38.chr22_GL383582v2_alt    132917 214 +    162811 TCTTAAGAGCTCTTAGAATGTGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCCATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTTGCTTAGTAAAAACAAACCAATTAAA--GTATTTACCTTTAACCAGTATCTAAG------------------GTA-----TGTACCACTGATATAATAAAAATTGCTggccggccacagtggctc
s panTro4.chr22              40957969 214 +  49737984 TCTTAAGAGCTCTTAGAACGTGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCCATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTTGCTTAGTAAAAACAAACCAATTAAA--GTATTTACCTTTAACCAGTATCTAAG------------------GTA-----TGTACCACTGATATAATAAAAATTGCTggccggccacagtgcctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37497831 214 +  46535552 TCTTAAGAGCTCTTAGAATGTGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGTAAAAACAAACCAATTAAA--GTATTTACCTTTAACCAGTATCTGAG------------------GTA-----TGTACTATTGATATAATAAAAATTGCTggccggccacagtggctc
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87011910 209 +  95678458 TCTTAAGACCTCTTAAAATGTGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGTAAAAACAAACCAAT-------TTTTCACCTTTAACCAGTATCTAAG------------------GTA-----TGCACTATTGATATAATAAAAAGTGCTggccagccacagtggctc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87668531 209 -  96509753 TCTTAAGACCTCTTAAAATGTGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGTAAAAACAAACCAAT-------TTTTCACCTTTAACCAGTATCTAAG------------------GTA-----TGCACTATTGATATAATAAAAAGTGCTggccagccacagtggctc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82495047 209 +  90941950 TCTTAAGACCTCTTAAAATGTGTCCTGCTGTATCT-TAAGAGCTCCTAAAATGTGTTATCTATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGTAAAAACAAACCAAT-------TTTTCACCTTTAACCAGTATCTAAG------------------GTA-----TGTACTATTGATATAATAAAAAGTgctggccagccacagtggctc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24755280 232 +  33263144 TCTTAAGACCTCTTAAAATGTGTCCTGCTATATCT-TAAGAGCTCCTAAAATGTGTTATCTATGTGATTTTCTCTACAAATCTTCCTCTAAGCAGAGAATGTGTTGGCTTTACCTCGCTTAGTAAAAACAAACTAAT-------TATTCACCTTTAACCAGTATCTAAGTATTTATTATACTAACCAGTATTTATTATACTATTGATATAATAAAAAGTGCTggccagccacagtggctc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2001498 214 -   2117846 TCTTAAGAGTTCTTAAAATGTGTCCTGCTGTATCT-TAAGAACTCCTAACACACGTTATCTATGTGATTTTCTCTATAAATCTTCCCCTAGACAGATAATGTGTTGGCTTTACCTCACTTAGTAAAAACAAACCAAGTAAA--GTATTTACCTTTAACCAGTATCTAAG------------------GTA-----TGTACTATTCATAAAATAAAAATTGCCAgccagccacagtggctc
i calJac3.chrUn_GL286373    I 304 C 0
s mm10.chr15                 82860859 146 + 104043685 ------------------------CCCCAGGATCC-CAGGAGTTGCTAAAGT---------ATGTGATCTTCTCTACAAGTTATCCTTACAGCAAAGAATTTGTTGG-TTTACTTCACTTAATAAAACCAAACAGTAAAAA--ATTTTTACC--AAACTAAT------G------------------GAA-----TGTGCTACAAATACTA--------------------------CTA
i mm10.chr15                C 0 C 0
s canFam3.chr10              46142639 166 -  69331447 ----AACAGCTCTCAG---------------ATCTGTAAGAGCTCCAGAAAC-----------GTGATCTTCTCTACAACTCTTCCT-TAAAAACAGAATTTTCTGGCTTTCCCTTGCTTAGTAAAAACAAACTGAGTCAAGTGTATCTGCCCTTAACCACGACCTAAG------------------GTA-----TGTGCTACCGATGCAATAA--------------------TAGCTC
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=588290.000000
s hg38.chr22_GL383582v2_alt    133131 281 +    162811 acacctgtaatcccagcactttgggaggccgaggcaggcagactgtttgagctcaggagaccagcatgggcaacataacaagaccccgtctccacaaaaaataca-----------------------------aaagaattagctgggtgtgctggcttgtgcctgtag----tcccagccactccagaggctgaggcaggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcacgctactacactccagcctgggtgcta-cagtaaga-cctgtcccagtaaataaataaaTAATTG
s panTro4.chr22              40958183 281 +  49737984 acacctgtaatcccagcactttgggaggccgaggcaggcagactgtttgagctcaggagaccagcatgggcaacataacaagaccccgtctccacaaaaaataca-----------------------------aaagaattagctgggtgtgctggcttgtgcctgtag----tcccagccactccagaggctgaggcaggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcacgctactacactccagcctgggtgcta-cagtaaga-cctgtcccaataaataaataaaTAATTG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37498045 281 +  46535552 acacctgtaatcccaacactttgggaggccgaggcaggcaggttgtttgagctcaggagaccagtatgggcgacgtaacaagaccccgtctctacaaaaaataca-----------------------------aaagaattagctgggtgtgctggcttgtgcctgtag----tcccaactattccagaggctgaggcgggaggatcacttgagcct-gggaggcagaggttgcagtgagccgaggctgcacgctactacactccagcctgggtgcta-gagtaaga-cctgtcccaataaataaataaaTAATTG
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87012119 281 +  95678458 acacctgtaataccagcactttgggaggctgaggcaggtagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctctacaaaaaatata-----------------------------aaacaattagcggggtgtgctggcttatgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcaccctactgcactccagcctgggtacta-gagcaaga-cttatctcaataaataaataaacaaaTG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87668740 281 -  96509753 acacctgtaataccagcactttgggaggctgaggcaggtagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctctacaaaaaatata-----------------------------aaacaattagctgggtgtgctggcttatgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcaccctactgtactccagcctgggtacta-gagcaaga-cttatctcaataaataaataaacaaaTG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82495256 281 +  90941950 acacctgtaatcccagcactttgggaggctgagggaggtagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctctacaaaaaatata-----------------------------aaacaattagctgggtgtgctggcttgcgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcacgctactgcactccagcctgggtacta-GAGCAAGa-cttatctcaataaataaataaacaaatg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24755512 282 +  33263144 acacctgtaatcccagcactttgggaggctgaggcaggcagattgtttgagctcaggagaccagcatgggcaacataacaagaccacatctccacaaaaaatata-----------------------------aaacaattagctgggtgtgctggcttgtgcctgtag----tcccagctactccagagactgaggcgggaggatcacttgagcct-aggaggcagaggttgcagtgagccgaggttgcacgctactgcactccagcctgggtactaggagcaaga-cttatctcaataaataaataaacaaaTG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2001712 312 -   2117846 acatttgtaatcccagcactttgggaggctgaggcagggagac----tgagctcaggagactagcatgggcaatataggaaaaccccatctctacaaaacacacacacacacacacccacacacacacacacacaaacaattagctgggtatgctggcttgtgcctgtagctctctctagctactccagaggctgaggtatgaggatcacttgagcctggggaggcagaggatgcagtaagctgaggttacatgccactgcactccagcctgggtgcta-gagcaagaccctgtctcaataaaTTACTTAATAAATG
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82861005 114 + 104043685 ATAATTATATATTAAGCAACTT--------------------------------------CCAATATGGCCAAC-------------------------------------------------------------------TATCTG-----GCTTCCCTGTGTATATAC----AAACTGCCCCTCCC----------CGGGAGGGT------------GGGGGACTGA------------------------------------------------TC-ATTTATGA-CATGTTCTAA-----------------G
i mm10.chr15                C 0 C 0
e canFam3.chr10              46142805   0 -  69331447 C
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=66736.000000
s hg38.chr22_GL383582v2_alt    133412 28 +    162811 CCATTTATTTAGCAATCTATATATGTTA
s panTro4.chr22              40958464 28 +  49737984 CCATTTATTTAGCAATCTATATATGTTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37498326 28 +  46535552 CCATTTATTAAGCAATGTATATATGTCA
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87012400 28 +  95678458 CCATTTATTAAGCAATCTATATATGTCA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87669021 28 -  96509753 CCATTTATTAAGCAATCTATATATGTCA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82495537 28 +  90941950 ccaTTTATTAAGCAATCTATATATGTCA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24755794 28 +  33263144 CCATTTATTAAGCAATCTATATATGTCA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2002024 28 -   2117846 GCATTTATTTATTTATCTATATATGCCA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82861119 18 + 104043685 TCATT----------TCTAGACATGTTG
i mm10.chr15                C 0 C 0
s canFam3.chr10              46142805 19 -  69331447 CCATTTATTC---------TACGTGTCA
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=94892.000000
s hg38.chr22_GL383582v2_alt    133440 34 +    162811 GTCACTGTGTGGTTTTACCTGTAACTCAATTAAT
s panTro4.chr22              40958492 34 +  49737984 GTCACTGTGTGGTTTTACCTGTAACTCAATTAAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37498354 34 +  46535552 GTCACTGTGTGATTTTACCTGTAACTCAATTAAT
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87012428 34 +  95678458 GTCACTGTGTGGTTTTACCTGTATCTCAATTAAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87669049 34 -  96509753 GTCACTGTGTGGTTTTACCTGTATCTCAATTAAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82495565 34 +  90941950 GTCACTGTGTGGTTTTACCTGTATCTCAATTAAT
i papAnu2.chr10             C 0 I 465
s chlSab2.chr19              24755822 34 +  33263144 GTCACTGTGTGGTTTTACCTGTATCTCAATTAAT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2002052 34 -   2117846 GTCACTGTGTGGTTTTACCTGTATCTCAATTAAT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46142824 34 -  69331447 TGCGCTGTATGGCTTTACGGGTATTTTAACtcac
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82861137  0 + 104043685 C
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=164245.000000
s hg38.chr22_GL383582v2_alt    133474 75 +    162811 GAATGAGGGGGAAAA-ATTAATGTAATTTTTTCCAAAAGTCCAAATTTTCCAAAAGTCACTCCTCTAGGACAAGTT
s panTro4.chr22              40958526 75 +  49737984 GAATGAGGGGGAAAA-TTTTATGTAATTTTTTCCAAAAGTCCAAATTTTCCAAAAGTCACTCCTCTAGGATAAGTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37498388 75 +  46535552 GAATGAGGGGGAAAA-ATTTATGTAATTTTTTCCGAAAGTCCAAATTTTCCAAAAGTCACTCCTCTATCACAAGTT
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87012462 74 +  95678458 GAATGAGGGGGGAAA--TTTATGTAATTTTTTCCAAAAGTCCAAATTTTCCAAAAGTCACTCCTCTAGGACAAGCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87669083 74 -  96509753 GAATGAGGGGGGAAA--TTTATGTAATTTTTTCCAAAAGTCCAAATTTTCCAAAAGTCACTCCTCTAGGACAAGCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82496064 74 +  90941950 GAATGAGGGGggaaa--tttatgtaattttttccaAAAGTCCAAATTTTCCAAAAGTCACTCCTCTAGGACAAGCT
i papAnu2.chr10             I 465 C 0
s chlSab2.chr19              24755856 74 +  33263144 GAATGAGGGGGGAAG--TTTATGTAATTTTTCCCAAAAGTCCAAATTTTCCAAAAGTCACTCCTCTAGGACAAGCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2002086 59 -   2117846 CAATGAGGGGGGAAAAACTTACGTAATT-----------------TTTTCTAAAAGTCACTCCTCTAGGACAAGTT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46142858 63 -  69331447 agatgaggaaacaaa---aaacataaattgtgt----------aatttgccgaaagtcgctcttccaggataaact
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82861137  0 + 104043685 C
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=2341875.000000
s hg38.chr22_GL383582v2_alt    133549 875 +    162811  
s panTro4.chr22              40958601 873 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37498463 840 +  46535552  
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87012536 880 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87669157 880 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82496138 880 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24755930 878 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2002145 860 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82861137 857 + 104043685  
i mm10.chr15                C 0 I 2
s canFam3.chr10              46142921 878 -  69331447  
i canFam3.chr10             C 0 C 0
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=10571.000000
s hg38.chr22_GL383582v2_alt    134424 7 +    162811 CATTTCC-
s panTro4.chr22              40959474 7 +  49737984 CATTTCC-
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37499303 7 +  46535552 CATTTCC-
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87013416 7 +  95678458 TACTTCC-
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87670037 7 -  96509753 CACTTCC-
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82497018 7 +  90941950 Cacttcc-
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24756808 7 +  33263144 CATTTCC-
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82861996 7 + 104043685 AAATCCC-
i mm10.chr15                I 2 C 0
s canFam3.chr10              46143799 7 -  69331447 -atttttc
i canFam3.chr10             C 0 I 1401
e calJac3.chrUn_GL286373      2003005 0 -   2117846 C
e nomLeu3.chr7b             106705101 0 - 115148730 C

a score=495274.000000
s hg38.chr22_GL383582v2_alt    134431 285 +    162811 -------------------------------------------------------------------------------------------Tggccaggcgcagtggctcacgcctgtaataccagcactttgggaggccgaggtgggcggataacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaa------------------tacaaaaaaatt------agtcgggc---gtggtggtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagattgcagt-----gagatcgcacca---------ctgcactccagcctgggcaaca-agcgagactctgtctcaaaaaaaa
s panTro4.chr22              40959481 285 +  49737984 -------------------------------------------------------------------------------------------Tggccgggcgcggcggctcacgcctgtaataccagcactttgggaggccgaggtgggtggataacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctgctaaaaa------------------tacaaaaaaatt------agtcgggt---gtggtagtaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagattgcagt-----gagatcgcacca---------ctgcactccagcctgggcaaca-agcgagactctgtctcaaaaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37499310 285 +  46535552 -------------------------------------------------------------------------------------------Tggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaa------------------tacaaaaaaatt------agccgggc---ctggtggcgggcgcctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacctggg-aggcagagcttgcagt-----gagatcgcacca---------ctgcactccagcctgggcaaca-agcgagactctgtctcaaaaaaaa
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87013423 291 +  95678458 -------------------------------------------------------------------------------------------Tggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaa------------------tacaaaaaaatt------agccaggcccactggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtaagccaagatcgcacca---------ctgcactccagcctgggtgacagagcgagactc---ctctcaaaaaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87670044 288 -  96509753 -------------------------------------------------------------------------------------------Tggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaa------------------tacaaaaaaatt------agccaggc---gtggtggtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtaagccgagatcgcacca---------ctgcactccagcctgggtgacagagcgagactc---ctctcaaaaaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82497025 288 +  90941950 -------------------------------------------------------------------------------------------tggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacaaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaa------------------tacaaaaaaatt------agccaggc---gtgggggtgggcacctgtagttccagctactcgggaggctgaggcaggagaatggcatgaacccagg-aggcagagcttgcagtgagccgagatcgcacca---------ctgcactccagcctgggtgacagagcgagactc---ctctcaaaaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24756815 289 +  33263144 -------------------------------------------------------------------------------------------Tggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccaccctggctaacacagtgaaaccccgtctctactaaaaa------------------tacaaaaaaatt------agccaggc---gtggtggtgggcacctgaagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggtaggcagagcttgcagtgagccgagatcgcacca---------ctgcactccagcctgggtgacagagcgagactc---gtctcaaaaaa
i chlSab2.chr19             C 0 C 0
s mm10.chr15                 82862003 386 + 104043685 AAataaatagatagatagatagatagatagatagatagatagatagatagatagatagatagataagtaaataaataTAAAAATAAAAATAAagccaggtatggtggtatactcctgtcatcacaacaa-ctggaaggctgaagaaggagggtcataaatttgaagtcacggtaagaaactggactacatagggaaaccccatctc----aaaaaCCCCACCCAACTTTTTCCCCCAAAAAAATTTAAGGGagccaggc---atggtgacacacaactttaatctgagaacccaaggaggtaga---attaaaaaggcatatgtctgag-agttagagac-----------cagcctgctccatataccaagtttcaggccagtcaaagctacataatgagaccATATT----------
i mm10.chr15                C 0 C 0
e canFam3.chr10              46143806 1401 -  69331447 I
e calJac3.chrUn_GL286373      2003005   0 -   2117846 C
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=430739.000000
s hg38.chr22_GL383582v2_alt    134716 213 +    162811 aaTTTCCTAAAAAATTTAAAAGATGATATCCCATCTGGTTAGGTTAGGCTAAAGCTGGTACaaaaaaaaaaaaa-aaaaaaaaaaaaGCACCATAAATGATTATGACTC--TTGGAAAAGAAAACTGGTAATAAAACAGtcaaccaaacaa----------aaaaacaaaataccaacatattcactccagtaatatgtattagaagaaaaaactggcaacaacct
s panTro4.chr22              40959766 208 +  49737984 aaTTTCCTAAAAAATTTAAAAGATGATATCCCATCTGGTTAGGTTAGGCTAAAGCTGGTAC-------AAAAAA-AAAAAAAAAAAAGCACCATAAATGATTATGACTCTTTTGGAAAAGAAAACTGGTAATAAAACAGtcaaccaaacaa----------aaaaacaaaataccaacatattcactccagtaatatgtattagaagaaaaaactggcaacaacct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37499595 207 +  46535552 aa-TTCCTAAAAAATTTAAAAGATGATATCCCATCTGGTTAGGTTAGGCTGAAGCTGGTAC-------AAAAAA-AAAAAAAAAAAGGCAGCATAAATGATTATGACTATTTTGGAAaagaaaactggtaataaaacagtcaaccaaacaa----------aaaaacaaaataccaatatattcactccagtaatacgtattagaagaaaaaactggcaacaacct
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87013714 219 +  95678458 aaTTTCCTAAAAAATTTAAAAGATGATATCCCTTCTGGTTAGGTTAGGCTACAGCTGGTAC-------GGGGGTAAAAAAAAAAAGCGCAGCATAAATGCTTATGACTCTTTTGGAAAAGAAAACTGGTAATAaaactgacaaccaaacaaccaaccaaacaaacaaaaaaTaccaacatattcactccagtaatacgtattagaagaaaaaactggcaacaacct
i rheMac3.chr10             C 0 I 9
s macFas5.chr10              87670332 218 -  96509753 aaTTTCCTAAAAAATTTAAAAGATGATATCCCTTCTGGTTAGGTTAGGCTACAGCTGGTAC-------GGGGGT-AAAAAAAAAAGCGCAGCAGAAATGCTTATGACTCTTTTGGAAAAGAAAACTGGTAATAaaacaatcaaccaaacaaccaaccaaacaaacaaaaaaTaccaacatattcactccagtaatacgtattagaagaaaaaactggcaacaacct
i macFas5.chr10             C 0 I 9
s papAnu2.chr10              82497313 216 +  90941950 aatttcctaaaaaatttaaaagatgatatCCCTTCTGGTTAGGTTAGGCTACAGCTGGtac-------gggggg---aaaaaaaagcgcAGCATAAATGCTTATGACTcttttggaaaagaaaactggtaataaaacaatcaaccaaacaaacaaccaaacaaacaaaaaataccaacaTATTCACTCCAGTAATACGTATTAGAAGAAAAAACTGGCAACAACCT
i papAnu2.chr10             C 0 I 9
s chlSab2.chr19              24757104 209 +  33263144 aaTTTCCTA-------TAAAAGATGATATCCCTTCAGGTTAGGTTAGGCTACAGCTGGTAC-------AGGGGG---AAAAAAAAGCGCAGCATAAATGCTTATGACTCTTTTGGAAAAGAAAACTGGTAATAaaacaatcaaccaaccaaccaaccaaccaaacaaaaaataccaacaTATTCACTCCAGTAATACGTATTAGAAGAAAAAACTGGCAACAACCT
i chlSab2.chr19             C 0 I 221
s calJac3.chrUn_GL286373      2003005 200 -   2117846 AATTTCCTAAAAAATTTAAAAGATGATATCCCATCTGGTTAGGTTAGGCTGAAGCTGGTAC-------GAAAAG-TAACAAAA----GCAGCAAAAAGGATGATAACTC-TTTGGAAAAGAAAGCTGGTAATAAAA--ATCAACCAAACA-----------AAAAACAAAATACCAACATATTCACCCCAGCAATACGTATTAGAAGAAAAAACTGGCAACAATCT
i calJac3.chrUn_GL286373    C 0 I 4
s mm10.chr15                 82862389 135 + 104043685 AAT------AACAACTTAAGAGACCATATCCCATCTGGTGAACTTAGGCTGAGGGTGGTAC-------ACACAT-AACAAAA-----GCAGCAAACATTCTTACAATTC---TAAAGATATAAATTGGTAATTTAA-------------------------AA-------------------TTGTTCCTGCAGGATCTGT-------------------------
i mm10.chr15                C 0 C 0
e canFam3.chr10              46143806 1401 -  69331447 I
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=562479.000000
s hg38.chr22_GL383582v2_alt    134929 238 +    162811 atttgaaaattgattaaacaaattatggtatatccactcaaagaaatagtacataatcattttaaacaattgcaaagactctagcaccatagaaaattacgtagtatcagatgaaaagagcagctcacgtaaacttatacctgtgctatgattataact--atctgaaaatgaggcattcatttagtcccaggccaaagggaataatggagaaaaaaggaaaacttctggactatccaag
s panTro4.chr22              40959974 238 +  49737984 atttgaaaattgattaaacaaattatggtatatccactcaaagaaatagtacataatcattttaaacaattgcaaagactctagcaccatggaaaattacgtagtatcagatgaaaagagcagctcacgtaaacttatacctgtgctatgattataact--atctgaaaatgaggcattcatttagtcccaggccaaagggaataatggagaaaaatggaaaacttctggactatccaag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37499802 237 +  46535552 atttgaaaattgattaaacaaattacagtatatccactcaaggaaatagtacataatcattataaacaattgcaaagactctagcaccatggaaaattacgtagtatcagatgaaaagagcagctcacataaacttatacctgtcctatgattataact--atctgaaaATGAGGCACTCATTTAGTCCCAGGCCAAAGGGAATAATGGAGAAAAA-GAAAAACTTCTGGACTATCCAAG
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87013942 236 +  95678458 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaagattctagcaccatggaacattacgtagtatcacatgaaaagagcagctcacataaactcatacctgtgctatgattataact--atctgaaaatgaggcattcatttagtcccaggccaaagggaataatggagaaaaatggaaaACTTCTAGAACATCCAAG
i rheMac3.chr10             I 9 I 1024
s macFas5.chr10              87670559 236 -  96509753 atttgaaaattggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaagattctagcaccatggaacattacgtagtatcacatgaaaagagcagctcacataaactcatacctgtgctatgattataact--atctgaaaatgaggcattcatttagtcccaggccaaagggaataatggagaaaaatggaaaACTTCTGGACCATCCAAG
i macFas5.chr10             I 9 C 0
s papAnu2.chr10              82497538 236 +  90941950 ATTTGAAAATTGGTTAAgcaaattatggtatatccacTCAAAGAAATAGTACATAATCA--ATAAACAATTGCAAAGATTCTAGCACCATGGAACATTACGTAGTATCACATGAAAAGAGCAGCTCACATAAAATCATACCTGTGCTATGATTATAACT--ATCTGAAAATGAGGCATTCATTTAGTCCCAGGCCAAAGGGaataatggagaaaaatggaaaacttctGGACCATCCAAA
i papAnu2.chr10             I 9 C 0
s chlSab2.chr19              24757534 236 +  33263144 ATTTGAAAATtggttaagcaaattatggtatatccactcaaagaaatagtacataatca--ataaacaattgcaaagattctagcaccatggaaaattacatagtatcacatgaaaagagcagctcacataaactcatacctgtgctatgattataact--atctgaaaatgaggcattcatttagtcccaggccaaagggaataatggagaaaaatggaaaACTTCTGGACCATCCAAG
i chlSab2.chr19             I 221 C 0
s calJac3.chrUn_GL286373      2003209 232 -   2117846 ATTTCAAAACTGATTAAGCAAATTATGGTATATCCACTCAAGGAAATA----ATAATCATTATAAAGAATTGCAAAAACTCTAGCATCATAAAAGATTTCATAGTACCAGATGAAAAGAACAGCTCACATCAACTCACACCTGTGCAATGATTATAACC--ATCTG-AAATGAGGCATTCATTTAGTCCCAGGACAAAGGGAACAATGGGGAAAAC-AGAAATCTTCTGGACTACCCAAA
i calJac3.chrUn_GL286373    I 4 C 0
s mm10.chr15                 82862524 161 + 104043685 ----------------AGCAAATTATGGTATACCT-------TACACAGTGCATAATCA----------TTGTGAAGATTCTAGCCACATGAAATA---------------------------------------CATACTTGTGCTATG-----GACTGCATATAAAAATTGGACATTCTTATAGATGGAGGACAAAGGAAATGACTGGAAAAAT--GAAAACCTTTTGATGATCTACA
i mm10.chr15                C 0 C 0
e canFam3.chr10              46143806 1401 -  69331447 I
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=20354.000000
s hg38.chr22_GL383582v2_alt    135167 11 +    162811 atggcagtgtt
s panTro4.chr22              40960212 11 +  49737984 gtggcagcgtt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37500039 11 +  46535552 GTGGCAGCGTT
i ponAbe2.chr22             C 0 C 0
s macFas5.chr10              87670795 11 -  96509753 GGGGCAGCATT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82497774 11 +  90941950 GGGGCAGCATT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24757770 11 +  33263144 GGGGCAGCATT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2003441 11 -   2117846 GTGGCAGAATT
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82862685 11 + 104043685 GTGGCAGGATT
i mm10.chr15                C 0 I 10835
e canFam3.chr10              46143806 1401 -  69331447 I
e rheMac3.chr10              87014178 1024 +  95678458 I
e nomLeu3.chr7b             106705101  0 - 115148730 C

a score=156137.000000
s hg38.chr22_GL383582v2_alt    135178 163 +    162811 gtggaagtattttttccccttttcatttctatttacattaatttttgtgtaggaaataaTCACttttttttttttttttttgagacagagtcttacactg-cact---gctggagtgcagtggtgcaatcttggctcactgtagcctctgcctcccaggttcaagca
s panTro4.chr22              40960223 158 +  49737984 gtggaagtattttttccccttttcatttctatttacattaatttttgtgtaggaaataaTCAC-----tttttttttttttgagacagagtcttgcactg-cact---gctggagtgcagtggtgcaatcttggctcactgtagcctctgcctcccaggttcaagca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37500050 152 +  46535552 GTGGAAGTATTGTTTCCCCTTTTCATTTCTATTTACATTAATTTTTGTGTAGGAAATAATCAC--------ttttttttttgagac--agtctcgcactg--act---gctagagtgcagtggtgcaatgtcggctcacagtagcctctgcctcccaggttcaagca
i ponAbe2.chr22             C 0 C 0
s macFas5.chr10              87670806 121 -  96509753 GTGAAAGTTGTTGTTGtttttg----------------------------------------------gttttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctcagctcactgtagcctctgcctcccaggttcaagca
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82497785 126 +  90941950 GTgaaagttgttgttgtttttg-------------------ttttt----------------------ggtttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctcagctcactgtagcctctgcctcccaggttcaagca
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24757781 128 +  33263144 GTGGAAGTTGTTttttttttctgt-----------------ttttt----------------------tgtttttttttttgagacagagtatcactctgtcacccaggctggtgtgcagtgctgcaatctcagctcactgtagcctctgcctcccaggttcaagca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2003452 157 -   2117846 GTGGAAATATTTTTTCCCTTTT---CATTTGTTTACATTACTTTTTGTGTAGGAAATAATCAC-----tttttggttctttgagac--agtctcaccctgtcacccaggctggagtgcagtggcacgatctcggctcactgcagcctctgccttccaggtttaagca
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46143806 1401 -  69331447 I
e rheMac3.chr10              87014178 1024 +  95678458 I
e nomLeu3.chr7b             106705101   0 - 115148730 C

a score=493775.000000
s hg38.chr22_GL383582v2_alt    135341 216 +    162811 attctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaccacgtccggctaa-tttttgtatttttagtagagacagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgcgattacagg-gtgagccacagtgctcagccAAAA--------------TGTCATTAACCTCATTT
s panTro4.chr22              40960381 216 +  49737984 attctcctgcctcagcctcccaagtagctgagattacaggtgcctgccaccacgtccagctaa-tttttgtatttttagtagagacagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattacagg-gtgagccacagtgctcagccAAAA--------------TGTCATTAACCTCATTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37500202 216 +  46535552 attctcctgccttagcctcccaagtagctgagattacaggtgcctgccaccacgcctggctaa-tttttgaatttttagtagagatagcattttgccacgttggccaggctggtcttgaactcctgacctcaagtgatccacctgttttggcttcccaaagtgctgggattacagg-gtgagccacagtgctcagccAAAA--------------TGTCATTAACCTCATTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106705101 216 - 115148730 attcttctgcctcagcctcccaagtagctgagattacaggtacctgccaccacgcccagctaa-tttttgtatttttagtagagatagcatttcgccatgttggccaggctggtcttgaactcctgacctcaagtgagccacctgtcttggcttcccaaagtgctgggattacagg-gtgaggcacagtgctcggccAAAA--------------TGTCATTAACCTCATTT
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87670927 216 -  96509753 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctca-tttttttatttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgg-gtgagccacagcacttggccAAAA--------------TGTCATTAACCTCATTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82497911 217 +  90941950 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctcattttttttatttttattagagatagcattttgccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccgg-gtgagccacagcacttggcCAAAA--------------TGTCATtaacctcattt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24757909 216 +  33263144 attctcctgcctcagcctcccaaggagctgagactacaggcgcccgccaccacacctggctca-tttttaaatttttattagagatagcattttgccacgttggccaggctggtcttgaactcctgacctcaagtgatccacctgtcttggcttcccaaagtgctgggattaccag-gtgagccacagcacttggccAAAA--------------TGTCATTAACCTCATTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2003609 231 -   2117846 attttcctgcctcagcctcccaagtagctgggattacaggcgcgtgccaccatgcctggctaa-tttttgtacttttggtagagacagcattttgccatgttggccaggctagtcttgaactcttgacttcaagtgatccacctgtctgggcctcccaaagttctgggattacaggcatgaaccacagagtctggccAAAATAATCACTTTAAACTGTCATTAACCTAATTT
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46143806 1401 -  69331447 I
e rheMac3.chr10              87014178 1024 +  95678458 I

a score=21650.000000
s hg38.chr22_GL383582v2_alt    135557 17 +    162811 AAAAATTACAACCCTTA
s ponAbe2.chr22              37500418 17 +  46535552 AAAAATTACAACCCTTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106705317 17 - 115148730 AAAAATTACAACCCTTA
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87671143 17 -  96509753 TAAAATTACAACCCTTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82498128 17 +  90941950 aaaaattacaacccTTA
i papAnu2.chr10             C 0 C 0
s calJac3.chrUn_GL286373      2003840 17 -   2117846 AAAAATGACAACCCTTA
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46143806 1401 -  69331447 I
e chlSab2.chr19              24758125  0 +  33263144 C
e rheMac3.chr10              87014178 1024 +  95678458 I
e panTro4.chr22              40960597  0 +  49737984 C

a score=0.000000
s hg38.chr22_GL383582v2_alt    135574 305 +    162811 ggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaa
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46143806 1401 -  69331447 I
e calJac3.chrUn_GL286373      2003857   0 -   2117846 C
e chlSab2.chr19              24758125   0 +  33263144 C
e papAnu2.chr10              82498145   0 +  90941950 C
e macFas5.chr10              87671160   0 -  96509753 C
e rheMac3.chr10              87014178 1024 +  95678458 I
e nomLeu3.chr7b             106705334   0 - 115148730 C
e ponAbe2.chr22              37500435   0 +  46535552 C
e panTro4.chr22              40960597   0 +  49737984 C

a score=273.000000
s hg38.chr22_GL383582v2_alt    135879 1 +    162811 a
s panTro4.chr22              40960597 1 +  49737984 A
i panTro4.chr22             C 0 C 0
s chlSab2.chr19              24758125 1 +  33263144 A
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46143806 1401 -  69331447 I
e calJac3.chrUn_GL286373      2003857 0 -   2117846 C
e papAnu2.chr10              82498145 0 +  90941950 C
e macFas5.chr10              87671160 0 -  96509753 C
e rheMac3.chr10              87014178 1024 +  95678458 I
e nomLeu3.chr7b             106705334 0 - 115148730 C
e ponAbe2.chr22              37500435 0 +  46535552 C

a score=6208.000000
s hg38.chr22_GL383582v2_alt    135880 16 +    162811 aaaaTTACAACCCTTG
s panTro4.chr22              40960598 16 +  49737984 AAAATTACAACCCTTG
i panTro4.chr22             C 0 C 0
s chlSab2.chr19              24758126 16 +  33263144 AAAATTACAACCCTTA
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46145207 16 -  69331447 aaaaattCACCCCTCA
i canFam3.chr10             I 1401 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e calJac3.chrUn_GL286373      2003857  0 -   2117846 C
e papAnu2.chr10              82498145  0 +  90941950 C
e macFas5.chr10              87671160  0 -  96509753 C
e rheMac3.chr10              87014178 1024 +  95678458 I
e nomLeu3.chr7b             106705334  0 - 115148730 C
e ponAbe2.chr22              37500435  0 +  46535552 C

a score=1913477.000000
s hg38.chr22_GL383582v2_alt    135896 745 +    162811  
s panTro4.chr22              40960614 745 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37500435 741 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106705334 741 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87671160 739 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82498145 742 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24758142 740 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2003857 724 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46145223 729 -  69331447  
i canFam3.chr10             C 0 I 3549
e mm10.chr15                 82862696 10835 + 104043685 I
e rheMac3.chr10              87014178 1024 +  95678458 I

a score=394052.000000
s hg38.chr22_GL383582v2_alt    136641 168 +    162811 TTCATTCaaatataattttgaggccgggcctggtggctcaagcctgtaatcccagcacttcggaaggctgaggcaggcagatcacacctgaggtcagaagttcaagaccagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactggccacatac
s panTro4.chr22              40961359 168 +  49737984 TTCATTCAAATATAATTTTGAggccgggcctggtggctcaagcctgtaatcccagcacttcggaaggctgaggcaggcagatcacacctgaggtcagaagttcaagaccagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactggccacatac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37501176 166 +  46535552 TTCATTCAAATATAATTTTGAggccgggcctggtggctcaagcctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcagaagttcaagaccagcctggccaacatggtaaaatgctgtctctactaaaaatacaaaaactagccacgtgt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106706075 166 - 115148730 TTCATTCAAATATAATTTTGAggccaggcctggtggctcaagcctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagaccagcctggccaacatggtgaaatgctgtctctactaaaaatacaaaaactagccacgtgt
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87671899 166 -  96509753 TTCattcaaatacaattctgaggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagaccagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82498887 166 +  90941950 ttcattcaaaTACAATTCTGaggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagaccagcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24758882 166 +  33263144 TTCATTCAAATACAATTCTGAggccaggtctggtggctcacgtctgtaatcccagcactttggaaggctgaggcaggcagat--cacctgaggtcaggagttcaagacccgcctggccaacatgatgaaatgctgtctctactaaaaatacaaaaactagccacgtgt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2004581 166 -   2117846 TTCATTCAAATATAATTCTGAggccgggtgtggtgtctcacacctgtaatcccagcactttgggaggccaaggcaggtagat--cacctgagatcaagaattcaagaccagcctggccaacatggtgaaacgctgtttctactaaaaatacagaaattagccaggcat
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46145952 3549 -  69331447 I
e rheMac3.chr10              87014178 1024 +  95678458 I

a score=1752369.000000
s hg38.chr22_GL383582v2_alt    136809 632 +    162811  
s panTro4.chr22              40961527 632 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37501342 618 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106706241 635 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87015202 615 +  95678458  
i rheMac3.chr10             I 1024 C 0
s macFas5.chr10              87672065 615 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82499053 612 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24759048 618 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2004747 622 -   2117846  
i calJac3.chrUn_GL286373    C 0 I 415
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46145952 3549 -  69331447 I

a score=247800.000000
s hg38.chr22_GL383582v2_alt    137441 127 +    162811 ttgaactctggaggctgcagtgagctaagatcgtt--------------------------------------------------------------ccattgcactccagcctgggagacagagcaacagcctctctcaaaaa---aaaatagtaattttaaattacttcaaatgtacagaaaagtgcaaa
s panTro4.chr22              40962159 127 +  49737984 ttgaactctggaggctgcagtgagctaagatcgtt--------------------------------------------------------------ccattgcactccagcctgggagacagagcaacagcctctctcaaaaa---aaaataataattttaaattacttcaaatgtacagaaaagtgcaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37501960 127 +  46535552 ttgaactctggaggctgcagtgagctaagatcgtg--------------------------------------------------------------ccactgcactccagcctcggagac--agcaagagcctctctcaaaaaaataaaataataattttaaattacttcaaatgtacag-aaagtgcaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106706876 127 - 115148730 ttgaactctggaggctgcagtgagctaagatggtg--------------------------------------------------------------ccactgcactccagcctgggagacagagcaagagcctctctcaaaaa---aataaaataattttaaattacttcaaatgtacagaaaagtgcaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87015817 186 +  95678458 ttgaaccctggagactgcagtgagctaagatcATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcactccagcctgggagagagagcaagagcctctctcaaa-----aaaaTAATGA-tttaaattatttcaaatgtacagaaaagtacaag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87672680 124 -  96509753 ttgaaccctggagactgcagtgagctaagatcatg--------------------------------------------------------------ccactgcactccagcctgggagagagaacaagagcctctctcaaa-----aaaataatga-tttaaattatttcaaatgtacagaaaagtacaag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82499665 124 +  90941950 ttgaaccctggagactgcagtgagctaagatcatg--------------------------------------------------------------ccactgcactccagcctgggagagagagcaagagcctctctcaaa-----aaaattatga-tttaaattatttcaaatgtacaGAAAAGTGCAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24759666 124 +  33263144 ttgaaccctggagactgcagtgagctaagatcatg--------------------------------------------------------------ccactgcactccagccttggagagagagcaagagcctctctcaaa-----aaaataatga-tttaaattatttcaaatgtacagaaaagtgcaag
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46145952 3549 -  69331447 I
e calJac3.chrUn_GL286373      2005369 415 -   2117846 I

a score=1724648.000000
s hg38.chr22_GL383582v2_alt    137568 573 +    162811  
s panTro4.chr22              40962286 573 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37502087 574 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106707003 574 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87016003 573 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87672804 573 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82499789 573 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24759790 573 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2005784 575 -   2117846  
i calJac3.chrUn_GL286373    I 415 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46145952 3549 -  69331447 I

a score=963321.000000
s hg38.chr22_GL383582v2_alt    138141 302 +    162811 gcttattagagat----gtagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaaactatagagtggcatgatctggtttcagttcttaaatggctcctctggctgttttgtggaaaacagaccaggggaggggcaaggacag-agcagggaattagttag-------------ttggtagtctggtt
s panTro4.chr22              40962859 302 +  49737984 gcttattagagat----gtagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcaaacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaaactatggagtggcatgatctggtttcagttcttaaatggctcctctggctgttttgtggaaaacagaccaggggaggggcaaggacag-agcagggaattagttag-------------ttggtagtctggtt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37502661 302 +  46535552 gattattagagat----gcagtgtctc-aggccccgcagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagccattggagggttttaagctatagagtggcatgatctggtttcagttcttaaatggctcctctggctgttctgtggaaaacagagcagggaaggggcaaggacag-agcagggaattggttgg-------------ttggtagtctggtg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106707577 298 - 115148730 gcttattagagat----gcagtgtctc-aggccccacagacctacaggatcagattctgcatgttaacaaggtcactagcaagtcacacatatgttac-tgtttgtgaagtacCAGTGAAAGGTCTTATAAAAAGTAACAGCCACATGGGGAAGTTCGGATTTTattagaagcccttggagggttttaagctatagagtggcatgatctggtttcagtttttaaatggctcctctggctgttttgtggaaaacagaccaggggaggcgcaaggacag-agcggggaa----ttag-------------ttggtagtctggtt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87016576 298 +  95678458 gtttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGAAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaat-ggggaggggcaaggacag-agcagggag----ttag-------------ttggtagtctggtt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87673377 298 -  96509753 gtttattagagat----atagtgtctcaaggccccacagacctacaagatcagattctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGAAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaac-ggggaggggcaaggacag-agcagggag----ttag-------------ttggtagtctggtt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82500362 298 +  90941950 GTTTATTAGAGAT----ATAGTGTCTCAAGGCCCCACAGACCTATAAGATCAGATTCTGCATGTTAACAAGGTCACTAGCAAGTCACACACATGTTGC-TGTTTGAGAAGTATCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTATTAGAAGCCTTTGGAGGGTTTTAAGCTatagagtggcatgatctggtTTCAGTTCTCAAATGGCTCCTTTGGCTGTTTTGTGGAAAGCAGAAC-GGGGAGGGGCAAGGACAG-AGCAGGGAG----TTAG-------------TTGGTAGTCTGGTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24760363 292 +  33263144 gtttattagcgat----atagtgtcttaaggccccacagacctacagga------tctgcatgttaacaaggtcactagcaagtcacacacatgttgc-tgtttgagaagtaTCAGTGAAAGGTCTTATAAAAAGTAAGAGCCACATGGGGAAGTTCAGATTTTattagaagcctttggagggttttaagctatagagtggcatgatctggtttcagttctcaaatggctcctttggctgttttgtggaaagcagaac-ggggaggggcaaggacag-agcagggag----ttag-------------ttggtagtctggtt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2006359 297 -   2117846 gcttattagagacgtaggtagtgtctt-aggccccacagacctacagaatcagattctgcatgttaacaaggtcaccagcaagtcacaca----ttac-tgttcatgaagtacCAGTGAAAGGTCTTACGAAAAGTGAGAACCACA-GGGGAAGTTTAAATTTTattagaagcctttggagggttttaagctatagagtggcatgctctggtttcagttctcaaatagttcctctggctgttttgtgggaaacagaccaggggagagccaaggacag-agcagttag----ttag-------------ctggtagtctggtt
i calJac3.chrUn_GL286373    C 0 I 311
s canFam3.chr10              46149501 297 -  69331447 GCTCGCTGGAGGT----GCAGAGCTT--GGTCTCCAAGGGTCTAGACAATCAGTATCTGCATG-TAATGAGCTCC----CGAAGCATGTGCACGCTACAGGTTTGAAAAATACTGGCGAaggaccttgta---------agtcatgt-aagaattttggattttattagaaggctttagagagttttgagctaaagagtgacatgctctggtttcaattctcgagtggccactctgattgttctgtggaaaacagactttgggaggggccagggcagaagtagggag----ttagttaagaagctattttagtcatctgggt
i canFam3.chr10             I 3549 C 0
e mm10.chr15                 82862696 10835 + 104043685 I

a score=6497171.000000
s hg38.chr22_GL383582v2_alt    138443 2007 +    162811  
s panTro4.chr22              40963161 2005 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37502963 1998 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106707875 2001 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87016874 1982 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87673675 1982 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82500660 1982 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24760655 2001 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2006967 2019 -   2117846  
i calJac3.chrUn_GL286373    I 311 C 0
s canFam3.chr10              46149798 2078 -  69331447  
i canFam3.chr10             C 0 I 2781
e mm10.chr15                 82862696 10835 + 104043685 I

a score=926261.000000
s hg38.chr22_GL383582v2_alt    140450 323 +    162811 tctgtcaacaatgaccacgtacacaatggtggtcccatc-agagtacaatggagctgaaaaactcctattgcctggtgatgctgtagctgtcataatgcaacatattacctccttgtttatggtcatgcaagtgtaaacctaatatactgccagtg--gtataaaagcatagcacatacaactatgtacagtacataatacttgaaaataaactatgttactggtttacatatcctatgtagaattctatgttatgtatactatgtattctacttataaaaa-tagttaactaaagctgggtgtgggagcatgtgcctataagtcct
s panTro4.chr22              40965166 323 +  49737984 tctgtcaacaatgaccacgtacacaatggtggtcccatc-agagtacaatggagctgaaaaattcctattgcctggtgatgctgtagctgtcataatgcaacgtattacctccttgtttatggtcatgcaagtgtaaacctaatatactgccagtg--gtataaaagcatagcacatacaactatgtacagtatgtaatacttgaaaataaactatgttactggtttacatatcctatgtagaattctatgttatgtatactatgtattctacttataaaaa-tagttaactaaagctgggtgtgggagcatgtgcctataagtcct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37504961 324 +  46535552 tctgtcaacaatgaccacgtacacgatggtggtcccatc-agagtacaatggagctgaaaaattcctaacgcctggtgatgctgtagctgtcataatgcaatgtattacctccttgtttatggtgatgcaagagtaaacctgatatactgccagtgttgtataaaagcatagcacatacaactatgtacagtacataatacttgaaaataaactatgttactggtttacatatcctatgtagaattctatgttatgtatactatgtattctacttataaaaa-tagttaactaaagctgggtgtgggagcatgtgcctgt-agtcct
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106709876 322 - 115148730 tctgtcaacaacgataacgtacacaatggtggtcccatc-agagtacaacggagctgaaaaattcctatcgcctggtgatgctgtagctgtcataatgcaatgtattacctccttgtttatggtgatgcaagtgtaaacctaatatactgccagtg--gtataaaagcacagcacatacaactacgtacagtacataatactcgaaaataaactatgttactggtttacatatcctatgtagaattctatgttatggatactatatattctacttataaaaa-cagttaactaaagctgggtgtgggagcatgtgcctgt-agtcct
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87018856 323 +  95678458 tctgtcaacaatgaccacgtacacaatagtggtcccatc-agagtacaacggagctgaaaaattcccatcgcctggtgacgttgtagctgtcataaagcaatgtattacctccttgtttatggtgatgcaggtataaacctactatactgtcagtg--gtagaaaagcatagcacatacaactatgtacagtatataatacttgataataaactatgttactggtttacatatcctatgtgtaattctatattatgtatactatgtattctacttataaaaattaagtaactacagctgggtgtgggagcatgtgcctgt-agtcct
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87675657 323 -  96509753 tctgtcaacaatgaccacgtacacaatagtggtcccatc-agagtacaacggagctgaaaaattcccatcgcctggtgacgttgtagctgtcacaaagcaatgtattacctccttgtttatggtgatgcaggtataaacctactatactgtcagtg--gtagaaaagcatagcacatacaactatgtacagtatataatacttgataataaactatgttactggtttacatatcctatgtgtaattctatattatgtatactatgtattctacttataaaaattaagtaactacagctgggtgtgggagcatgtgcctgt-agtcct
i macFas5.chr10             C 0 I 643
s papAnu2.chr10              82502642 323 +  90941950 TCTGTCAACAATGACCACGTACACAATAGTGGTCCCATC-AGAGTACaacggagctgaaaaattcccatcGCCTGGTGACGTTGTAGCTGTCACAATGCAATGTATTACCTTCTTGTTCATGGTGATGCAGGTATAAACCTACTATACTGTCAGTG--GTAGAAAAGCATAGCACATACAACtatgtacagtatataatacttgataataaactatgttactggtttacaTATCCTATGTGTAATTCTATATTATGTATACTATGTATTCTacttataaaaattaagtaactaCAGCTGGGTGTGggagcatgtgcctgt-agtcct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24762656 323 +  33263144 tctgtcaacaatgaccacgtacacaatactggtcccatc-agagtacaacggagctgaaaaattcccatcgcctggtgacgttgtagctgtcataacgcaatgtattacctccttgtttatgatgatgcaggtataaacctactatactgtcagtg--gtagaaaagcatagcacatacaactatgtacagtatataatacttgataataaactatgttactggtttacatatcctatgtgtaattctatattatgtatactatgtattctacttataaaaattaagtaactacagctgggtgtgagagcatgtgcctgt-agtcct
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2008986 318 -   2117846 tctgtcaatgagaaccacatacacaacggtggtgccgttaagagtacaatggagctgaaaaatttctactgcccggtgactttgtagctatcataatgcaatgtattacctccttgtttactgtgatgcagctgtaaacctactatactgccagtg--gtat-aaagcacagcacatacaacta-gtacagtacttaatactt---aataaatcatgttactggtttaagtatcccatctggaattctatgttgtgtatactatgcattctacttataaaac-tagttaactaaaactggatgtgggagcatgtgcctgt-attcct
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I

a score=66912.000000
s hg38.chr22_GL383582v2_alt    140773 22 +    162811 agctactcaggaggctgaggca
s panTro4.chr22              40965489 22 +  49737984 agctactcaggaggctgaggca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505285 22 +  46535552 aactactcaggaggctgaggca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106710198 22 - 115148730 agctactcaggaggctgaggca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87019179 22 +  95678458 ggctactccggaggctgagaca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87676623 22 -  96509753 agctactcgggaggctgaggca
i macFas5.chr10             I 643 C 0
s papAnu2.chr10              82502965 22 +  90941950 ggctactcaggaggctgagaca
i papAnu2.chr10             C 0 I 322
s chlSab2.chr19              24762979 22 +  33263144 ggctactcaggaggctgagaca
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2009304 22 -   2117846 ggctactcaggaagctgaggca
i calJac3.chrUn_GL286373    C 0 I 1
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I

a score=2552.000000
s hg38.chr22_GL383582v2_alt    140795 1 +    162811 g
s panTro4.chr22              40965511 1 +  49737984 g
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505307 1 +  46535552 g
i ponAbe2.chr22             C 0 I 318
s nomLeu3.chr7b             106710220 1 - 115148730 g
i nomLeu3.chr7b             C 0 I 1
s rheMac3.chr10              87019201 1 +  95678458 g
i rheMac3.chr10             C 0 I 754
s macFas5.chr10              87676645 1 -  96509753 g
i macFas5.chr10             C 0 I 1
s papAnu2.chr10              82503309 1 +  90941950 a
i papAnu2.chr10             I 322 C 0
s chlSab2.chr19              24763001 1 +  33263144 g
i chlSab2.chr19             C 0 I 323
s calJac3.chrUn_GL286373      2009327 1 -   2117846 g
i calJac3.chrUn_GL286373    I 1 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I

a score=119199.000000
s hg38.chr22_GL383582v2_alt    140796 105 +    162811 agaatcgcttgaacctgggaggtggaggttgcagtgagccgagatcatgccactgcactccagtctgggcgacagagagagact--gtctcaaaaaaaaaaaccaaa
s panTro4.chr22              40965512 103 +  49737984 agaatcgctggaacctgggaggtggaggttgcaatgagccgagatcatgccactgcactccagtctgggtgacggagagagact--gtctcaaaaaaaaa--ccaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505626 102 +  46535552 agaatcgcttgaacctgggaggtggaggttgcagtgagccgaaatcatgccactgcactccagtctgggcgacagagagagact--gtctcaaaaaaaa---ccaaa
i ponAbe2.chr22             I 318 C 0
s nomLeu3.chr7b             106710222  67 - 115148730 aagatctcttgagcccaggacttcaag-------------------------------tctagcctgggcaacatggcaagacc-aatctcaaaaaata--------
i nomLeu3.chr7b             I 1 C 0
s macFas5.chr10              87676647  99 -  96509753 agaatggcgtgaacccaggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaaaa--------
i macFas5.chr10             I 1 C 0
s papAnu2.chr10              82503310 103 +  90941950 agaattgcttgaacctgggaggtggagtttgcagtgagctgagatcatgccactgtactccagtctgggcgacacagagagact--gtctcaaaaaaaac--ccaaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24763325  99 +  33263144 agaattgcttgaacctgggaggtggagtttgcagtgagctgagatcatgccactgcactccagtctgcgcgacac----agact--gtctcaaaaaaaac--ccaaa
i chlSab2.chr19             I 323 C 0
s calJac3.chrUn_GL286373      2009328  73 -   2117846 aagatttcctgcaccctagaattcaag-------------------------------tctagcctgggtaacatggcaagac---atctcaaaaaaataaataaaa
i calJac3.chrUn_GL286373    C 0 I 1903
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e rheMac3.chr10              87019202 754 +  95678458 I

a score=13276.000000
s hg38.chr22_GL383582v2_alt    140901 12 +    162811 gcaaacaaacaa
s panTro4.chr22              40965615 12 +  49737984 gcaaacaaacaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505728 12 +  46535552 gcaaacaaacaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106710289  9 - 115148730 ---aataaataa
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87676746 11 -  96509753 -aaaaaaaaaaa
i macFas5.chr10             C 0 I 4
s papAnu2.chr10              82503413 12 +  90941950 gcaaacaaacat
i papAnu2.chr10             C 0 I 3
s chlSab2.chr19              24763424 12 +  33263144 gcaaacaaacat
i chlSab2.chr19             C 0 I 3
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2009401 1903 -   2117846 I
e rheMac3.chr10              87019202 754 +  95678458 I

a score=16940.000000
s hg38.chr22_GL383582v2_alt    140913 10 +    162811 aaga--cactgt
s panTro4.chr22              40965627 10 +  49737984 aaga--cactgt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505740  8 +  46535552 aaga--cac--t
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106710298 12 - 115148730 aaagttcactgt
i nomLeu3.chr7b             C 0 I 823
s rheMac3.chr10              87019956 10 +  95678458 aaga--cactgt
i rheMac3.chr10             I 754 C 0
s macFas5.chr10              87676761 10 -  96509753 aaga--cactgt
i macFas5.chr10             I 4 C 0
s papAnu2.chr10              82503428 10 +  90941950 AAGA--CACTGT
i papAnu2.chr10             I 3 C 0
s chlSab2.chr19              24763439 10 +  33263144 aaga--cactgt
i chlSab2.chr19             I 3 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2009401 1903 -   2117846 I

a score=290933.000000
s hg38.chr22_GL383582v2_alt    140923 166 +    162811 tatcataggagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattgattattctgaccctgtgtaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaagtgtttaaaaagtg
s panTro4.chr22              40965637 166 +  49737984 tatcataggagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattaattattctgaccctgtgtaggtttaggctaatgcatgtgtttgtgtcttcgtttttaacaaaagtgtttaaaaagtg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505748 166 +  46535552 tatcatagaagatgatagctccatgtgtgttactgaccctaaagaccttccagtgggccaagatgtgaagctggaagacagtgatattgattattctgaccctgtgtaggtttaggctaatgcatgtgtgtgtgtcttagtttttaacaaaagcgtttaaaaagta
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87019966 158 +  95678458 tatcataggagatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtaaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaagtgttt--------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87676771 158 -  96509753 tatcataggggatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtaaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtgtttgtgtcttagtttttaacaaaagtgttt--------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82503438 158 +  90941950 TATCATAGgggatgacagctccatgtgtgttactgACCCTAAAGACCTCCCAGTGGGCCAAGATGTAAAgctggaagacagtgatactgattATTCTGGCCCTGTACAGGTTTAGGCTAatgcatgtgtttgtgtcttagtttttaacaaaagtgttt--------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24763449 158 +  33263144 tatcataggggatgacagctccatgtgtgttactgaccctaaagacctcccagtgggccaagatgtgaagctggaagacagtgatactgattattctggccctgtacaggtttaggctaatgcatgtgcttgtgtcttagtttttaacaaaagtgttt--------
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2009401 1903 -   2117846 I
e nomLeu3.chr7b             106710310 823 - 115148730 I

a score=2199815.000000
s hg38.chr22_GL383582v2_alt    141089 1088 +    162811  
s panTro4.chr22              40965803 1079 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37505914 1089 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106711133 1129 - 115148730  
i nomLeu3.chr7b             I 823 C 0
s rheMac3.chr10              87020124 1078 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87676929 1078 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82503596 1078 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24763607 1083 +  33263144  
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2009401 1903 -   2117846 I

a score=1626912.000000
s hg38.chr22_GL383582v2_alt    142177 593 +    162811  
s panTro4.chr22              40966882 597 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37507003 605 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106712262 614 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87021202 589 +  95678458  
i rheMac3.chr10             C 0 I 7
s macFas5.chr10              87678007 589 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82504674 589 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24764690 585 +  33263144  
i chlSab2.chr19             C 0 I 7
s calJac3.chrUn_GL286373      2011304 587 -   2117846  
i calJac3.chrUn_GL286373    I 1903 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I

a score=10304.000000
s hg38.chr22_GL383582v2_alt    142770 7 +    162811 CAGCAAC
s panTro4.chr22              40967479 7 +  49737984 CAGCAAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37507608 7 +  46535552 CAGAAAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106712876 7 - 115148730 CAGAAAC
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87678596 7 -  96509753 TAGAAAC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505263 7 +  90941950 TAGAAAC
i papAnu2.chr10             C 0 C 0
s calJac3.chrUn_GL286373      2011891 7 -   2117846 TAGAAAC
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e chlSab2.chr19              24765275 7 +  33263144 I
e rheMac3.chr10              87021791 7 +  95678458 I

a score=9291.000000
s hg38.chr22_GL383582v2_alt    142777 13 +    162811 TAGTTCGATCggc
s panTro4.chr22              40967486 13 +  49737984 TAGTTCGATCggc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37507615 13 +  46535552 TAGTTTGATCggc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106712883 13 - 115148730 TCGTTTGATCggc
i nomLeu3.chr7b             C 0 C 0
s calJac3.chrUn_GL286373      2011898 13 -   2117846 TAGTTTGACCAAC
i calJac3.chrUn_GL286373    C 0 I 28
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e chlSab2.chr19              24765275  7 +  33263144 I
e papAnu2.chr10              82505270  0 +  90941950 C
e macFas5.chr10              87678603  0 -  96509753 C
e rheMac3.chr10              87021791  7 +  95678458 I

a score=76796.000000
s hg38.chr22_GL383582v2_alt    142790 153 +    162811 cgggcgcagtggctcacgcccgtaatcccagcactttgggaggtcgaggcgggcggatcacgaggtcaggagatcgagaccatcctgtctaacacggtgaaaccccatctctactaaaaaaaatacaaaaaaattagcacggcgtggtggcgg
s panTro4.chr22              40967499 153 +  49737984 caggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcgcaaggtcaggagatcgagaccatcctgtctaacacggtgaaaccccatctctactaaaaaaaatacaaaaaaattagcacggcgtggtggcgg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37507628 153 +  46535552 cgggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaaaatacaaaaaaattaccacggcgtggtggcgg
i ponAbe2.chr22             C 0 M 436
s nomLeu3.chr7b             106712896 150 - 115148730 cgggcacagtggcttacgtctgtaatcc---cactttgggaggccgagacaggcgcatcacgaggtcgggagatcgagaccatcctgtctaacatggtgaaaccctgtctctactaaaaaaaatgcaaaaaaattaccatggcgtggtggcgg
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2011911  28 -   2117846 I
e chlSab2.chr19              24765275   7 +  33263144 I
e papAnu2.chr10              82505270   0 +  90941950 C
e macFas5.chr10              87678603   0 -  96509753 C
e rheMac3.chr10              87021791   7 +  95678458 I

a score=23863.000000
s hg38.chr22_GL383582v2_alt    142943 124 +    162811 gcacctgtggtcccagcaacccg--------------------------------ggaggcggagcttgcagtgagcctagatcgtgccactgcgctccagcctgggcaacagagcaagactccgtctccaaaaagaaaa--aaaaaaaaaaaaaaCT
s panTro4.chr22              40967652 121 +  49737984 gcacctgtggtcccagcaacccg--------------------------------ggaggcagagcttgcagtgagcctagatcgtgccactgcgctccagcctgggcaacagagcaagactccgtctccaaaaagaaaa--aaaaaaaaaaa---CT
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106713046 155 - 115148730 gcgcctgtggtcccagcaacccgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtctaccaagatggcgccactgagctccagcctgggcaacacaacattattgcgtctccaaaaagaaaactaaaaaaataaa---aT
i nomLeu3.chr7b             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2011911  28 -   2117846 I
e chlSab2.chr19              24765275   7 +  33263144 I
e papAnu2.chr10              82505270   0 +  90941950 C
e macFas5.chr10              87678603   0 -  96509753 C
e rheMac3.chr10              87021791   7 +  95678458 I
e ponAbe2.chr22              37507781 436 +  46535552 M

a score=152906.000000
s hg38.chr22_GL383582v2_alt    143067 100 +    162811 AGTTTGACCAACATGCTAATTTTAAAAC---AAATAAAATTTAAAAGAAAAC--aa----taattgcaactacttttattgagtgtttaaattatgtgcaatgcaatat
s panTro4.chr22              40967773 104 +  49737984 AGTTTGACCAACATGCTAATTTTAAAAC---AAATAAAATTTAAAAGAAAAC--AAACaataattgcaactacttttattgagtgtttaaattatgtgctatgcaatat
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106713201 102 - 115148730 AATTTGACCAACATGTTAATTTTAAAACAATAAATATAATTTATAATAAAA---AA----TCATTGCAACTACTTTTATTGAGTGTTTAAATTATGTGCAATGAAGTAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87021798 100 +  95678458 AGTTTGACCAACACGTTAATTTTAAAACAAGAAATAAAA-----AAGAAAACTTaa----taactgcaactacttttattgagtgtttaaattatgtgcaaagcagtat
i rheMac3.chr10             I 7 C 0
s macFas5.chr10              87678603 100 -  96509753 AGTTTGACCAACACGTTAATTTTAAAACAAGAAATAAAA-----AAGAAAACTtaa----taactgcaactacttttattgagtgtttaaattatgtgcaaagcagtat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505270 100 +  90941950 AGTTTGACCAACAcgttaattttaaaacaagaaataaaa-----aagaaaacttaa----taaCTGCAACTACTTTTATTGAGTGTTTAAATTATGTGCAAagcagtat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765282 100 +  33263144 AGTTTGACCAACACGTTAATTTTAAAACAAGAAATAAAA-----AAGAAAACTtaa----taactgcaactacttttattgagtgtttaaattatgtgcaaagcagtat
i chlSab2.chr19             I 7 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2011911  28 -   2117846 I
e ponAbe2.chr22              37507781 436 +  46535552 M

a score=7537.000000
s hg38.chr22_GL383582v2_alt    143167 6 +    162811 tttttg
s panTro4.chr22              40967877 6 +  49737984 tttttg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37508218 6 +  46535552 tttttg
i ponAbe2.chr22             M 436 C 0
s nomLeu3.chr7b             106713303 6 - 115148730 TTTTTG
i nomLeu3.chr7b             C 0 M 100
s rheMac3.chr10              87021898 4 +  95678458 tttt--
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87678703 4 -  96509753 tttt--
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505370 6 +  90941950 tttttg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765382 6 +  33263144 tttttg
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2011911 28 -   2117846 I

a score=156735.000000
s hg38.chr22_GL383582v2_alt    143173 96 +    162811 tttgttttgagacagagtctccctctgtcgtccaggctggagtgcactggtgcaatctcggctcagtgcaacctctgcctccctggttcaagcaat
s panTro4.chr22              40967883 96 +  49737984 tttgttttgagacagagtctccctctgttgtccacgctggagtgcagtggtgcaatctcggctcagtgcaacctctgcctccctggttcaagcaat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37508224 96 +  46535552 tttgttttgagacggagtctcgctctgtcgtccaggctggagtgcagtggtacaatctcggctcactgtaacctccgcctccctggttcaagcaat
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87021902 94 +  95678458 tttgttttgaaac--agtctccctctgttgtccaggtcggagcgcagtggtgcaatctcggctcaccgcaacccctgcctccggggttcaagcgat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87678707 94 -  96509753 tttgttttgaaac--agtctccctctgttgtccaggtcggagctcagtggtgcaatctcggctcaccgcaacccctgcctccggggttcaagcgat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505376 96 +  90941950 tttgttttgaaacagagtctccctctgttgtccaggtcggagcgcagtggtgcaatctcggctcaccgcaacccctgcctctgggattcaagcgat
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765388 96 +  33263144 tttgttttgaaacagagtctccctctgttgtccaggtcggagcgcagtggtgcagtctcggctcaccgcaacccctgcctccagggttcaagcgat
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2011911 28 -   2117846 I
e nomLeu3.chr7b             106713309 100 - 115148730 M

a score=11998.000000
s hg38.chr22_GL383582v2_alt    143269 5 +    162811 tctcc
s panTro4.chr22              40967979 5 +  49737984 tctcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37508320 5 +  46535552 tctcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106713409 5 - 115148730 tctca
i nomLeu3.chr7b             M 100 C 0
s rheMac3.chr10              87021996 5 +  95678458 tctcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87678801 5 -  96509753 tctcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505472 5 +  90941950 tctcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765484 5 +  33263144 tctcc
i chlSab2.chr19             C 0 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I
e calJac3.chrUn_GL286373      2011911 28 -   2117846 I

a score=586353.000000
s hg38.chr22_GL383582v2_alt    143274 207 +    162811 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttaaccatgttggccagactggtctcggactcctgacctgaagtcatccacctgcctcggcctcccaaagtgctaggattacaggtgtgagccatcacacccagctgcaatgcaatatattat
s panTro4.chr22              40967984 207 +  49737984 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttaaccatgttggccagactggtctcgaactcctgacctcaagtcatccacctgcctcggcctcccaaagtgctaggattacaggtgtgagccatcacacccagctgcaatgcaatatattat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37508325 207 +  46535552 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggtgaggttttcaccatgttggctagactggtctcgaactcctgacctcaagtgatccacctgcctcggtctcccaaagtgctaggattacaggtgtgagccatcaaacccagctGCAATGCAatatattat
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106713414 207 - 115148730 tgcctcagtctcccaagtagctgagattacaggcttgtgccacaatacccggctaatttttgtatttttagtagaggcgaggttttcaccatgttggccagactggtctcgaactcctgacttcaagtgatccacctgcctcggcctcccaaagtgctagaattacaggtgtgagccatcacacccAACTGCAATGCAatatattat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87022001 206 +  95678458 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacccggctaatttttgtatttttagtcgagacgagg-tttcaccacgttggccagactggtcccgaattcctgacctcaagtgatccatctgccttggcctcccaaagtgctaggtttacaggtgtgagccactgcacccagttgcaatgcaatatattat
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87678806 206 -  96509753 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacccggctaatttttgtatttttagtcgagacgagg-tttcaccacgttggccagactggtctcgaattcctgacctcaagtgatccatctgcctcggcctcccaaagtgctagggttacaggtgtgagccactgcacccagttgcaatgcaatatattat
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505477 206 +  90941950 tgcctcagtctcccgagcagctgggattacaggcgtttgccacaacacccggctaatttttgtatttttagtagagacgagg-tttcaccacgttggccagactggtctagaattcctgacctcaagtgatccatctgcctcggcctcccaaagtgctagggttacaggtgtgagccactgcacccagttgcAATGCAATATATTAc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765489 205 +  33263144 tgcctcagtctcccaagcagctgggattacaggcgtttgccacagcacccggctaatttttgtatttttagtagagatgagg-tttcaccacgttggccagactggtcttgaattcctaacctcaagtgatccatctgcctcggcct-ccaaagtgctagggttacaggtgtgagccactgcacccagttgcaatgcaatatattat
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2011939 198 -   2117846 tgcctcagcctcccaagtagctgggattacaggcatgtgccaccacgcccagctaa-ttttgtatttttaatagagatgggg-tttcaccaggttggccaggctggtcttgaactcctgacctcaagtgatctacctgccttggtctcccaaagtgctaggattacCAGCCTG-------GCACCCAGCAGCAAAGGAAAATattat
i calJac3.chrUn_GL286373    I 28 C 0
e mm10.chr15                 82862696 10835 + 104043685 I
e canFam3.chr10              46151876 2781 -  69331447 I

a score=815745.000000
s hg38.chr22_GL383582v2_alt    143481 250 +    162811 agtctcatttaatcttaac---tctattatgcagtaactagcca--ttctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaggaagacaggctggga-------------ctaacaaggaatgtgc-cctaacttctaCTGTTCTTAGCAATGTTCTGTGTATTCCC-AGCACACCCAGCAGGCACCTTCTGCACCTTTTCGTTTGTTCAGCCTGGTCCTTCTGCGTGAATAATA
s panTro4.chr22              40968191 250 +  49737984 agtctcatttaatcttaac---tctattatgcagtaactagcca--ttctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaggaagacaggctggga-------------ctaataaggaatgtgc-cctaacttctaCTGTTCTTAGCAATGTTCTGTGTATTCCC-AGCACACCCAGCAGGCACCTTCTGCACCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCGTGAATAATA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37508532 250 +  46535552 agtctcatttaatcttaac---tctattatgcagtaactagcca--ttctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaagaagacaggctggga-------------ctaataaggaatgtgc-cctaacttctaCTGTTCTTAGCAATGTTCTGTGTATTCCC-AGCACAGCCAGCAGGCACCTTCTGCACCTTTTCCTTTGTTCAACCTGGTCCTTCTGCATAAATAATA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106713621 248 - 115148730 agtctcattttatcttaa-----ctattatgcagtaactagcca--ttctgcagatgaggaaacaaaggctcagaaagttt-agtaactctcataaggttatacagccagtcagtgaagaagacaggctggga-------------ctaataaggaatgtgc-cctaacttctactgctcttagcAATGTTCTGtgtattccc-agcacacccagcagggaccttctgcaccttttcctttgttcagcctggtccttctgcctgaataata
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87022207 249 +  95678458 agtctcatttaatcttaac---tctatgatgtagtaactagtca--ttacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggTTGGGA-------------CTAATAAGGAATGTGC-CCTAATTTCTACCGTTCTTAGCGATGT--TGTGTATTCCC-AGAACACCCAGCAGGCACCTTTTGCATCTTTTCTTTTGTTCAGCCTGGTCCTTCTGCCTGAATAATA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87679012 249 -  96509753 agtctcatttaatcttaac---tctatgatgtagtaactagtca--ttacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagaagacaggttggga-------------ctaataaggaatgtgc-cctaatttctaccgttctTAGCGATGT--TGtgtattccc-agaacacccagcaggcaccttttgcatcttttcttttgttcagcctggtccttctgcctgaataata
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505683 249 +  90941950 agtctcatttaatcttaac---tCTATGATGTAGTAACTAGTCa--ttacacagatgaggaaacaaaggctcagagagtttaagtaactctCATAAGGTTATACAGCCAGTCAGTGAAGAAGACAGGTTGGGA-------------CTAATAAGGAATGTGC-CCTAATTTCTACCGTTCTTAGCGATGT--TGTGTATTCCC-AGAACACCCAGCAGGCACCTTTTGCATCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCCTGAATAATA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765694 249 +  33263144 agtctcatttaatcttaac---tctatgatgtagtaactagtca--ttacacagatgaggaaacaaaggctcagagagtttaagtaactctcataaggttatacagccagtcagtgaagacgacaggttggga-------------ctaATAAGGAATGTGC-CCTAATTTCTACCATTCTTAGCGATGT--TGTGTATTCCC-AGAACACCCAGCAGGCACCTTTTGCATCTTTTCCTTTGTTCAGCCTGGTCCTTCTGCCTGAATAATA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2012137 246 -   2117846 agcctcatttaatcttacc---tctatgatgtagtaactagccaacctctgcagatgaggaaac--aggctcagaaagttt-agtaactcttgtaaggttatacagccagtcagt---gaagacaggctggga-------------ctaatacagtatgtgc-cctaacttcTACCATTCTTAGCAATGTTCTGTGTGTGCCCTGGCAGGCCCAGTACGCACCTTTCGCATCTTTTCC-TTGTACAG-CTCGTCTTTCTGCCTGAATAATA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46154657 265 -  69331447 agtctcatataatcttaacaaatctgcgatgtagttattagcca--ttctgcagaatgggaaactgaggctcagaaagctg----aattctcacaaggttacacagctggtcagtgaagaagaaatgctgagatttaagaccaggtctaataaagaatgtgctctttATCCCTCCTGTTCTTAGTCATGTTCTGTGTATTCCCCAGCGCCCCCTGCATACACCTTCTGCAGGCTTTCCTTTATTCTAGCTGGTTCTTCTGCCTGAGTAATA
i canFam3.chr10             I 2781 C 0
e mm10.chr15                 82862696 10835 + 104043685 I

a score=3170456.000000
s hg38.chr22_GL383582v2_alt    143731  904 +    162811  
s panTro4.chr22              40968441  904 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37508782  908 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106713869  897 - 115148730  
i nomLeu3.chr7b             C 0 I 309
s rheMac3.chr10              87022456  904 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87679261  904 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82505932  906 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24765943  812 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2012383  866 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82873531  955 + 104043685  
i mm10.chr15                I 10835 C 0
s canFam3.chr10              46154922 1102 -  69331447  
i canFam3.chr10             C 0 C 0

a score=827256.000000
s hg38.chr22_GL383582v2_alt    144635 216 +    162811 GCCAATGAACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGACGATTAATTCCTGTGAAATGAACACA-GGAGTTAGGAGGAGCGGAGGTGAGTCAACACACTCTACACTTC-CACGGTTGCCTCAAACTCACCACAATTCCAAAATACCAAGAAACAATGTGCTAGTTCTTGC-TTTTTTTA
s panTro4.chr22              40969345 216 +  49737984 GCCAATGAACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGACCATTAATTCCTGTGAAATGAACACA-GGAGTTAGGAGGAGCGGAGGTGAGTCAACACACTCTACACTTC-CACGGTTGCCTCAAACTCACCACAATTCCAAAATACCAAGAAACAATGTGCTAGTTCTTGC-TTTTTTTA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37509690 216 +  46535552 GCCAATGGACCTTTTTACAGTTTAT-GGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACACAGGGAGTTAGGAAGAGCGGAGGTGAGTCAACACACTCTACACTTC-CACGGTTGCCTCAAACTCACCATAATTCCAAAATACCAAGAAACAACGTGCTAGTTCTTGC-TTTTTTTA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715075 217 - 115148730 GCCAGTGGACCTTTTTACAGTTTATGGGGTCTTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGACGATTAATTCCTGTGAAATGAACACA-GGAGTTAGGAGGAGCGGAGGTGAGTCAACACACTCTACACTTC-CGCTGTTGCCTCACACTCACCACAATTCCAAAATACCAAGAAATAATGTGCTAGTTCTTGCTTTTTTTTA
i nomLeu3.chr7b             I 309 C 0
s rheMac3.chr10              87023360 216 +  95678458 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATA-GGAGTTAGGAGGAGCAGAGGTGAGTCAACACACTCTACACTTC-CACGGTTGCCTCAAACTCATCACAATTCCAAAATACCAAGAAATGATGTGCTAGTTCTTGC-TTTTTTTA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87680165 216 -  96509753 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATA-GGAGTTAGGAGGAGCAGAGGTGAGTCAACACACTCTACACTTC-CACGGTTGCCTCAAACTCATCACAATTCCAAAATACCAAGAAATGATGTGCTAGTTCTTGC-TTTTTTTA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82506838 217 +  90941950 GCCAATGGACCTTTTTACAGTTTATGGGGTCCTCTCCATATGGCTGGGGATTGCAGGCATGGGAGGAATA----------TTGTCTGGACGATTAACTCCTGTGAAATGAACATA-GGAGTTAGGAGGAGCAGAGGTGAGTCAACACACTCTACACTTC-TACGGTTGCCTCAAACTCATCACAATTCCAAAATACCAAGAAATGATGTGCTagttcttgc-ttttttaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24766755 216 +  33263144 GCCAATGGACCTTTTTACAGTTTATGGAGTCCTCTCCATATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGATGATTAACTCCTGTGAAATGAACATA-GGAGTTAGGAGGAGCAGAGGTGAGTCAACACACTCTACACTTC-CACGGTTGCCTCAAACTCACCACAATTCCAAAATACCAAGAAATGATGTGCTAGTTCTTGC-TTTTTTTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013249 214 -   2117846 GCCAATGGACCTTTTTACAGCTTATGGGGTCCTCTCCGCATGGCTGGGGA-TGCAGGCATGAGAGGAATG----------TTGTCTGGGCGATTAACTCCTGTGAAATGAGCATA-GGAGTTAGGAGAAGCGGAGGCGACTCCACACACACTGCACTTT-CATGGTTTCCTCCAACTCACCACAACTCC-AAATACCAAGAAACAATGTACTAGTACTTG--GTTTTTTA
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82874486 210 + 104043685 GCCAATGAACCTTTTTACAGTTTA-------CTCTCCATATAGCTGAGAA-TGGAAGCATGGGGGGGGGGGGGGGTACACCTATATGGATGATTAAGTCCTGTAAAACAAAGATA-GAAGCTGAGAAAAGTAGAGGTGAGT--AGATGGTTGCAAATTC-CACTGTTGCCACAAAGCCGCCACAACTCCAAAA---CAATATATTAT----TAGCTCTCGC-CTATTTTA
i mm10.chr15                C 0 I 436
s canFam3.chr10              46156024 195 -  69331447 GCCAATGGACCTTTTTACAG-TTATGGGGTCCTCTCCGTATGGCTGGGGA-TGCAGGCATGGGAGGAATA----------TTGTCTGGATGATTAATTCCTGTGGAA-GAGCACA-AGAG------------GAGCTGAGCTGACACACTCCACAATTTGCACTGTTGCCTCAAATTTACCACAACTCCAAAATCCTGAGAAACAGTGT--TAGTTCTTGT-CA------
i canFam3.chr10             C 0 C 0

a score=141737.000000
s hg38.chr22_GL383582v2_alt    144851 48 +    162811 AGTG--TCCATAAGCTAAAAGTCCTTCTGAAGAT---TGAGCGTCCCACTTAA
s panTro4.chr22              40969561 48 +  49737984 AGTG--TCCATAATCTAAAAGTCCTTCTGAAGAT---TGAGCGTCCCACTTAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37509906 48 +  46535552 AGTG--TCCATAAGCTAAAAGTCCTTCTGAAGAT---TGAGCGTCCCACTTAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715292 48 - 115148730 AGTG--TCCATAAGCTAAAAGTCCTTCTGAAGAT---TGAGCGTCCCACTTAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87023576 47 +  95678458 AATG--TCAATAAGCT-AAAGTCCTTCTGAAGAC---TGAGCTTCTCACTTAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87680381 47 -  96509753 AATG--TCAATAAGCT-AAAGTCCTTCTGAAGAC---TGAGCTTCTCACTTAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507055 47 +  90941950 aatg--tcaataagcT-AAAGTCCTTCTGAAGAC---TGAGCTTCTCACTTAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24766971 47 +  33263144 AATG--TCAATAAGCT-AAAGTCCTTCTGAAGAC---TGAGCTTCTCACTTAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013463 48 -   2117846 AATT--TCCGTAAGCTAAACGTCCTTCTGAAGAT---TTAGCTTCCCACTTAA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46156219 48 -  69331447 AATGCATCTACAAGTA-----TCCTTCTAAAGATTACTGAGCTTCCCACTTAA
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82874696 436 + 104043685 I

a score=9994.000000
s hg38.chr22_GL383582v2_alt    144899 4 +    162811 AAGC
s panTro4.chr22              40969609 4 +  49737984 AAGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37509954 4 +  46535552 AAGC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715340 4 - 115148730 AAGC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87023623 4 +  95678458 CAGT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87680428 4 -  96509753 CAGT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507102 4 +  90941950 CAGT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24767018 4 +  33263144 CAGT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013511 4 -   2117846 AAGC
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82875132 4 + 104043685 AAGT
i mm10.chr15                I 436 C 0
s canFam3.chr10              46156267 4 -  69331447 AAAC
i canFam3.chr10             C 0 I 197

a score=636945.000000
s hg38.chr22_GL383582v2_alt    144903 214 +    162811 CCAAACCAAAAAATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCTAACT-CCAAACTAAGGTGAAATAG---TTACATCTAAGTATCCAAGAAGAGCATCAAG-AATTAGCAAATTAATTTAGGGTCAGAAAACCTAA-TAATTAGGGTCAGAAGAACA------------------AAAAGATCATTTCGGTAGCATAAGA-----------------ACTTTGTgccgggtgcagtggct
s panTro4.chr22              40969613 215 +  49737984 CCAAACCAAAAAATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCTAACT-CCAAACTAAGGTGAAATAG---TTACATCTAAGTATCCAAGAAGAGCATCAAG-AATTAGCAAATTAATTTAGGGTCAGAAAACCTAATTAATTAGGGTCAGAAGAACA------------------AAAAGATCATTTCGGTAGCATAAGA-----------------ACTTTGTgccgggtgcagtggct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37509958 202 +  46535552 CCAAACCAAAAAATAGTTTGCAGGATTATTTCAAATATATTAAAAACATCAAAATGCTAACT-CCAAACTAAGGTGAAATAG---TTACATCTAAGTATCCAAGAAGAGCATCAAG-AATTAGCAAATTAATTTACGGTCAGAAAACCTTA-------------AAGAAACA------------------AAAATATCATTTCAGTAGCATAAGA-----------------ACTTTGTgctgggtgcagtggct
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715344 202 - 115148730 CCAAACCAAAAAATAGTTTGCAGGATTATTTCAAATATATTGAAAACATCAAAATGCTAACT-CCAAACTAAGGTGAAATAG---TTACATCTCAGTATCCAAGAAGAGCATCAAG-AATTAGCAAATTAATTTAGGGTCAGAAAACCTTA-------------AAGAAACA------------------AAAAGATTATTTCAGTAGCATAAGA-----------------ACTTTGTAccgggtgcagtggct
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87023627 205 +  95678458 CCAAACGAATAAATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCTAACT-CCAAACTAAGATGAAATAGTTATTACCTTTAATTATTCAAGAAGAGCATTAAG-AATTAGCAAATTAATTCAGGGTCAGAAAACCTTA-------------AAGAAACA------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTTGTgccgggtgcggtggct
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87680432 205 -  96509753 CCAAACGAATAAATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCTAACT-CCAAACTAAGATGAAATAGTTATTACCTTTAATTATTCAAGAAGAGCATTAAG-AATTAGCAAATTAATTCAGGGTCAGAAAACCTTA-------------AAGAAACA------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTTGTgccgggtgcggtggct
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507106 205 +  90941950 CCAAACGAATAAATACTTTGCAGGATTACTTCAAATATATTACAAACATCAAAATGCTAACT-CCAAACTAAGATGAAATAGTTATTACCTTTAATTATTCAAGAAGAGCATTAAG-AATTAGCAAATTAATTCAGGGTCAGAAAacctta-------------aagaaaca------------------aaaagatcaTTTCAGTAACATAAGA-----------------ACTTtgtgccgggtgcggtggct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24767022 205 +  33263144 CCAAACGAATAAATACTTTGCAGGATTATTTCAAATATATTACAAACATCAAAATGCTAACT-CCAAACTAAGATGAAATAGTTATTACCTTTAATTATTCAAGAAAAGCATTAAG-AATTAGCAAATTAATTCAGGGTCAGAAAACCTTA-------------AAGAAACA------------------AAAAGATCATTTCAGTAACATAAGA-----------------ACTTTGTgccgggtgcggtggct
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013515 202 -   2117846 CCAAACCAATATATACTTTGAAGAATTATTTCAAATATATTACAAACATCAAAATGCTAACT-CCAAACTAAGGCAAAATAA---TTACCTCTAAGTATCCAAGAAGAGCATCAAG-AATTAGCAAATTAATTCAGGGTCAGAAAACCTTA-------------AAGAAACA------------------AAAGGATCATTTTATTAGCATAAGA-----------------ACTTTGTgccaggtgtggtggct
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82875136 159 + 104043685 CTACACCTAGAACTAGTTCAAAGAATTATTAAAAACATATCAGAAATA-CAAAACTCCAACT-TCAAATTAAGAAGAAGAAATCGTCTCTTTGAACTGTTCAAGAAGGGCACCAAC-AATTGGCAAGTT-----------------------------------GGAGAGTA------------------AAGAGATAAT----------TAAGC-----------------A------GCAAGATGC-------
i mm10.chr15                C 0 C 0
s canFam3.chr10              46156468 236 -  69331447 CCACACCTATAAATAGCTCAGAGGATTGTTTCAAACACTCTACAAACTTCAAAACTCCAACTCCCAAACTAAACTAGACTTA-GAACATCTCTAAGTCTCTAGGAAGTGCTTTAAGAAATTAGCAAATT-----GGGGTATGcagtcagtt-------------aagcagtggactcttggtttcggctcaggtcatgatcttagggtcctgagattgaaccccaaagtcatgctctgtgctcagcgtggagtct
i canFam3.chr10             I 197 I 112

a score=302503.000000
s hg38.chr22_GL383582v2_alt    145117 98 +    162811 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggagttcaagacaagcctggccaacatggtgaaaccccacctc
s panTro4.chr22              40969828 98 +  49737984 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggagttcaagacaagcctggccaacatggtgaaaccccacctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510160 98 +  46535552 cacgtctgtaaatcccagaacttttggagggcagggcaggcagatcacgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccacctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715546 98 - 115148730 cacgcctgtaaatcccagaacttttggagggcagggcaggcggatcacgaggtcaggggttcaagaccagcctggccaacatggtgaaaccccacctc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87023832 97 +  95678458 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87680637 97 -  96509753 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507311 97 +  90941950 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacgaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24767227 97 +  33263144 cacgcctgt-aatcccagaacttttgtaggccagggcaggcggatcacaaggtcaggagttcaagaccagcctggccaataaggtgaaactccatctc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013717 97 -   2117846 catgcctgt-aatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagtttgagaccagcctggccaatatgatgaaaccccgtctc
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82875295 81 + 104043685 --------T-GGtcccagca-ttccagaagcagaggcaggtggatcccta-------agttggaggccagtcaggacggcacaaagaaaccctgtctc
i mm10.chr15                C 0 I 428
e canFam3.chr10              46156704 112 -  69331447 I

a score=104182.000000
s hg38.chr22_GL383582v2_alt    145215 39 +    162811 tactaaaaaaaatacaagaattagccaggcatagtggcg
s panTro4.chr22              40969926 39 +  49737984 tactaaaaaaaatacaagaattagccaggcatagtggcg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510258 39 +  46535552 tactaaaaaaaatgcaagaattagccaggcatagtggcg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715644 39 - 115148730 tactaaaaaaaatacaagaattagccaggcatagtggtg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87023929 37 +  95678458 tact--aaaaaatacaagaattagccaagcatagtggcg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87680734 37 -  96509753 tact--aaaaaatacaagaattagccaagcatagtggcg
i macFas5.chr10             C 0 I 295
s papAnu2.chr10              82507408 37 +  90941950 tact--aaaaaatacaagaattagccaagcatagtggcg
i papAnu2.chr10             C 0 I 296
s chlSab2.chr19              24767324 37 +  33263144 tact--aaaaaatacaagaattagccaagcatagtggcg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013814 37 -   2117846 tact--aaaaaacacaaaaattgtctgggcatggtggca
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82875376 428 + 104043685 I
e canFam3.chr10              46156704 112 -  69331447 I

a score=44570.000000
s hg38.chr22_GL383582v2_alt    145254 18 +    162811 catgcctgtagtcccaca
s panTro4.chr22              40969965 18 +  49737984 catgcctgtagtcccaca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510297 18 +  46535552 catgcctgtagtcccaca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715683 18 - 115148730 catgcctgtagtcccaca
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87023966 18 +  95678458 catgcctgtcgccccaga
i rheMac3.chr10             C 0 I 289
s macFas5.chr10              87681066 18 -  96509753 catgcctgtaatcccagc
i macFas5.chr10             I 295 C 0
s papAnu2.chr10              82507741 18 +  90941950 catgcctgtaatcccagc
i papAnu2.chr10             I 296 C 0
s chlSab2.chr19              24767361 18 +  33263144 catgcctgtcgccccaga
i chlSab2.chr19             C 0 I 298
s calJac3.chrUn_GL286373      2013851 18 -   2117846 cgtgtctatagtcccagc
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82875376 428 + 104043685 I
e canFam3.chr10              46156704 112 -  69331447 I

a score=261388.000000
s hg38.chr22_GL383582v2_alt    145272 94 +    162811 tactcgggaggc-tgaggcaggagaattgcttgagcccaggagacagaagttgcagtgagccgagatcgtgccactgcactccagtctggccaac
s panTro4.chr22              40969983 94 +  49737984 tactcgggaggc-tgaggcaggagaattgcttgagcccaggagacagaagttgcagtgagccgagatcctgccactgcactccagtctggccaac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510315 94 +  46535552 tactcaggaggc-taaggcaggagaattgtttgagcccgggagacagaggttgcagtgagccgagattgtgccactgtactccagcctggccaac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715701 93 - 115148730 tactcgggaggc-tgaggcaggagaattgcttgagcccgggagacagaggttgcagtgagccgagatcgtgccactgcactccagcctgg-cgac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87024273 95 +  95678458 tacttgggaggcttgaggcagaagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac
i rheMac3.chr10             I 289 C 0
s macFas5.chr10              87681084 95 -  96509753 tacttgggaggcttgaggcagaagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507759 95 +  90941950 tacttgggaggcttgaggcaggagaattgctcgagtccgggagacagaggttgcagtgagttgagatcgtgccactgcactccagcctggccaac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24767677 94 +  33263144 tacttgggaggc-tgaggcaggagaattgcttgagtccgggagacagaggttgcagtgagtcgagatcgtgccactgcactccagcctggccaac
i chlSab2.chr19             I 298 C 0
s calJac3.chrUn_GL286373      2013869 78 -   2117846 tactcgggaggc-tgaggca----------------ccgggaggcagaggttgcagtgagccaagattgtgccactgatctccagcctgggcaac
i calJac3.chrUn_GL286373    C 0 C 0
e mm10.chr15                 82875376 428 + 104043685 I
e canFam3.chr10              46156704 112 -  69331447 I

a score=5533.000000
s hg38.chr22_GL383582v2_alt    145366 2 +    162811 ag
s panTro4.chr22              40970077 2 +  49737984 ag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510409 2 +  46535552 ag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715794 2 - 115148730 ag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87024368 2 +  95678458 ag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87681179 2 -  96509753 ag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507854 2 +  90941950 ac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24767771 2 +  33263144 ag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013947 2 -   2117846 aa
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46156816 2 -  69331447 AG
i canFam3.chr10             I 112 C 0
e mm10.chr15                 82875376 428 + 104043685 I

a score=1881182.000000
s hg38.chr22_GL383582v2_alt    145368 582 +    162811  
s panTro4.chr22              40970079 587 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510411 588 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106715796 600 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87024370 574 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87681181 600 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82507856 672 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24767773 657 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2013949 576 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s mm10.chr15                 82875804 601 + 104043685  
i mm10.chr15                I 428 I 282
s canFam3.chr10              46156818 617 -  69331447  
i canFam3.chr10             C 0 C 0

a score=1237932.000000
s hg38.chr22_GL383582v2_alt    145950 421 +    162811 cttgggcaagttatttaacccatatgtctcacattcttcacctgcaaaagtgg-agttaacctaccttgccaccacacgggaatgtCCCACAG-TAAGTCTGCAAACAGCTAAGTACCATATAAATCAAAATTATCACTGTTAGAATTACCACCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAATAAGTAAAAGACAccagacatggtggctcacgcctataatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagatcagcctggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatccgagaatcacttgcttgtacacccaggaagcagaggttgcagtgagccgag
s panTro4.chr22              40970666 419 +  49737984 cctgggcaagttatttaacccatatgtctcacattcttcacctgcaaaagtgg-agttaacctaccttgccaccacacaggaatgtCCCACAA-TAAGTCTGCAAACAGCTAAGTACCATATAAATCAAAATTATCACTGTTAGAATTACCACCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAATAAGTAAAAGACAccagacatggtggctcacgcctataatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctttaccaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatccgagaatcacttgcttgt--acccaggaagcagaggttgcagtgagccgag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37510999 419 +  46535552 cttgggcaagttatttaacccatatgtcttacattcttcacctgcaaaagtgg-agttaacctaccttgccaccgcacaggaatgtCCCACAA-TAAGTCTGCAAACAGCTAAGTACCATATAAATTAAAATTATCACTGTTAGAATTACCACACTCTTTCCCTCTCTCAGGTAAAAACTTGAGCCAATAATAAAATAAGTAAAAGACAccagacatggtggctcacgcctataatcccagcactttggc-----aggccgaggcaggtgtatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacgctgtctctactaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcctagaatcacttacttgt--acccaggaagcagaggttgcagtgagcagag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106716396 417 - 115148730 cttgggcaagttatttaacccacatgtctcacattcttcatctgcaaaagtgg-agttaacctaccttgccaccgcacaggaatgtCCCACAA-TAAGTCTGCAAACAGATAAGTACCATATAAATTAAAATCATCACTATTAGAATTACTGCCCTCTTTCCCTCTCTCAGGTAAAAACTTGAACCAATAATAAAATAAGCAAAAGACAccagacatggtggctcacgcctgtaatcccagcactttggg-----aggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaacc--gtctctactaaaaatacaaaaattaactgggcatggtggcaagcacctgtaatccgagaatcacttgcttgt--acccagtaggcagaggttgcagtgagccgag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87024944 424 +  95678458 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacagAAATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTACCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAATAGGTAAAAGACAccagacacggtggctcatgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatccaagaatcacttgcttgt--acctaggaggcagagcttgcagtgagccgag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87681781 424 -  96509753 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccatacagAAATATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCATGTAAATTAAAATTACCACTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAATAGGTAAAAGACAccagacacggtggctcacgtctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatccaagaatcacttgcttgt--acctaggaggcagagcttgcagtgagccgag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82508528 422 +  90941950 cttgggcaagttatttaacccaTATGTCTCACattcttcatctgcaaaaatgG-AGTTAACCTACCTTGCCACCGTACAGAAAAATCTCACAA-TAAGTCTGCAAACAGTTAAGTACCatgtaaattaaaattatcaCTGTTAATATTACCACCCTCATTCCCTCTCTCAGGTAAAAACTTGAACCAATCATAAAATGGT--AAAGAcaccagacacggtggctcacgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagtttaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgtaatccaagAATCACTTGCTtgt--acctaggaggcagagcttgcagtgagccgag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24768430 424 +  33263144 cttgggcaagttatttaacccatatgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccaccgtacagAAATATATCACAA-TAAGTCTGCAAACAGCTAAGTACCATGTAAATTAAAATTATCACTGTTAGAATTAGCACCCTCATTCCTTCTCTCAGGTAAAAACTTGAACCAATCATAAAATAGGTAAAAGACAccagacacggtggctcacgcctgtaatcccagcattttgtaagcccaggctgaggtgggcagatcacttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccctgcctctactaaaaatacaaaaattagctaggcatggtggcagtcacctgcaatccaagaatcacttgcttgt--acctaggaggcagagcttgcagtgagccgag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2014525 379 -   2117846 cttgggcaagttatttaaccc--atgtctcacattcttcatctgcaaaaatgg-agttaacctaccttgccacctcacaggaatgtCCCACAATTAAGTTTGCTAACAGCTAAGTATCATATAAATTAAAATTATCACTGTTAGTATTACCACCCTCATTCCCTCTCTCACGTAAAAACTTGAACCAATAATAAAACAGGCAAAAGACAccagacacggtggctcatgtctgcaatcctagcaccttggg-----aggctaaggtgggcagatcacttgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccct-----------------------------------gtggcaggaacctgtcatctga----caattgcttgt--acccggcaggcagaggttacagtgagccgag
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46157435 235 -  69331447 cttgggcaagttatttaacccgcaagtcccactttactcatctgcaaaaatggcagttaaccta-cttattgcctcacaggaatgttccatga-taaatgtgtaaactgctaagtacCCCATAAATTAAAATGATCATTATTAGTATTACCATCCCCTCTGAATTTCTCAGGTAAATG-TTGAACCCATGAAAAAACAGGCAAAAGACA----------------------------------------------AG-------------------------------------------------CAACAAGG------------------AAAAAAACTAGAA-------------GAGGCA----------------------------------------------------------------
i canFam3.chr10             C 0 C 0
e mm10.chr15                 82876405 282 + 104043685 I

a score=257041.000000
s hg38.chr22_GL383582v2_alt    146371 141 +    162811 atctcaccactgcacactccagcctgggtgacagtgagattccacttcaaaa------aaac-aaacaaaaac--aaaaac---aaaaaaacaaGTAAAAGACAACAAGGAAAAAAATGG-AAAAGAG----GTTATCAAACA---AACAAAA-TAAACCCT
s panTro4.chr22              40971085 133 +  49737984 atctcaccactgcacactccagcctaggtg--agtgagattccacttcaaaa------aaac-------aaac--aaaaac---aaaaaaaCAAGTAAAAGATAACAAGGAAAAAAATGG-AAAAGAG----GTTATCAAACA---AACAAAA-TAAACCCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37511418 131 +  46535552 atctcaccactgcacacttcagcctgggtgacaatgagattccacttcaaaa-----------------aaac--aaaaac---aaaaaaacaagtaaaaGACAACAAGGAAAAAAATGG-AAAAGAG----GTTAGTTATCA---AACAAAA-TAAACCCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106716813 140 - 115148730 atctcaccactgcacactccagcctgggtgacagtgagattccacttcaaaa------caa--------aaac--aaaaacaaaaaaaaaacaagtaaaagacaacaa-gaaaaaaaTGG-AAAAGAGGTTAGTTATCAAACA---AACAAAA-TAAACCCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87025368 126 +  95678458 atttcaacactgcacactccagcctgggcaacagtgagattccacctcaaaa--------------------------------aaaaaaacaagtaaaaGACAATAAGGAAAAAAATGGAAAAAGAGGTTAGCTATCAAACA---AACAAAA-TAAATCCT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87682205 126 -  96509753 atttcaacactgcacactccagcctgggcaacagtgagattccacctcaaaa--------------------------------aaaaaaacaagtaaaagacaataaGGAAAAAAATGGAAAAAGAGGTTAGCTATCAAACA---AACAAAA-TAAATCCT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82508950 142 +  90941950 atttcaacactgcacactccagcctgggcaacagtgagattccacctcaaaa------aaa--------aaac--aaaaac---aaaaaaacaagtaaaagacaataaggaaaaatatggaaaaagaggttagctatcaaacaaacaacaaaa-taaaccct
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24768854 150 +  33263144 atttcaacactgcacacaccagcctgggcaacagtgagattccacctcaaaaaaaacaaaa--------aaacaaaaaaac---aaaaaaacaaGTAAAAGACAATAAGGAAAAAAATGGAAAAAGAGGTTAGCTATCAAACAAACAACAAAA-TAAACCCT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2014904 123 -   2117846 atcacaccactgcacactccag----ggcgacagtgagattccatctcaaaa------a----------aaac--aa-------aaaaaaaaaGGTAAAATACAACAT-GAAAAAAATGA-AAAA-------GCTATCAAACAAACAAAAAAA-CAAACGTT
i calJac3.chrUn_GL286373    C 0 I 247
s mm10.chr15                 82876687 141 + 104043685 ATCACAGTACCCCACA-TTCATCTGAACCCTCTCTGAGA-TCAACTTCTAAA------CCAATCTTCAGAAAT--TAGAAA---GAAAAAAAAAGAGATAAGCAACAAG----AAAACAG-AAAACAGATTAGCCACAAATCA---AACAAAAGCCAACCCT
i mm10.chr15                I 282 C 0
s canFam3.chr10              46157670  44 -  69331447 ------------------------------------------------------------------------------------------CCAGCTGTCAGTCAAC---CAAACAAATGA-AA-----------------------TACAACG-GAAACCCT
i canFam3.chr10             C 0 I 3

a score=1572034.000000
s hg38.chr22_GL383582v2_alt    146512 444 +    162811  
s panTro4.chr22              40971218 444 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37511549 433 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106716953 443 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87025494 441 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87682331 441 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82509092 440 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24769004 444 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2015274 442 -   2117846  
i calJac3.chrUn_GL286373    I 247 C 0
s mm10.chr15                 82876828 435 + 104043685  
i mm10.chr15                C 0 N 0
s canFam3.chr10              46157717 470 -  69331447  
i canFam3.chr10             I 3 C 0

a score=30501.000000
s hg38.chr22_GL383582v2_alt    146956 8 +    162811 TCAGCCAc
s panTro4.chr22              40971662 8 +  49737984 TCAGCCAc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37511982 8 +  46535552 TCAGCCAc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106717396 8 - 115148730 TCAGCCAc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87025935 8 +  95678458 TCAGCCAc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87682772 8 -  96509753 TCAGCCAc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82509532 8 +  90941950 TCAGCCAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24769448 8 +  33263144 TCAGCCAc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2015716 8 -   2117846 TCAGCCAT
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46158187 8 -  69331447 TCAGATAC
i canFam3.chr10             C 0 C 0

a score=5462043.000000
s hg38.chr22_GL383582v2_alt    146964 1882 +    162811  
s panTro4.chr22              40971670 1882 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37511990 1898 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106717404 1895 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87025943 1894 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87682780 1894 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82509540 1891 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24769456 1882 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2015724 1870 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46158195    0 -  69331447 C

a score=513884.000000
s hg38.chr22_GL383582v2_alt    148846 220 +    162811 caattcttcctgtcacttgaacatttaatggtcatgatcaggttattaactgacctaacttcaatactgttgtgtctgaggtaacagagagacctgaggaggtggtgagatggggggacacccagttggcagcagtctgaacacacatctatacacaacatgtatatattaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac
s panTro4.chr22              40973552 220 +  49737984 caattcttcctttcacttgaacatttaatggtcacgatcaggttattaactgacctaacttcaatactgttgtgtctgaggtaacagagagacctgaggaggtggtgagatgggggaacgcccagttggcagcagtctgaacacacatctatacacaacatgtatatattaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37513888 220 +  46535552 caattcttcctttcacttgaacacttaatgatcacgatcaggttattaactgacctaacttcaatactgttgtgtccgaggtaacagagagacctgaggaggtggtgagatgggggaacacccagttggcagcagtctggacacacatctatacacaacatgtatatattaagttcgctgtcttatatgggagtgctttgtggtgctccaaaacaattac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106719299 218 - 115148730 taattcttcctttcacttgaacacttaatggtcacgatcaggttattaactgacctaacttcaatactgttgtgtccgaggtaac--agagacctgaggaggtggtgagatggaggaacacccagttggcagcagtctgaacacacatctatacacaacatgtataaatcaagttcgccgtcttatatgggagtgctttgtggcgctccaaaacaattac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87027837 219 +  95678458 caattcttcctttcacttgaacacttaatgaccacggtcaggttattaactgacctaacttcaataccgttgtgttcaaaggaagggagagacccgaggagatgatgagatgggggaacacccggttggcaggagtctgaacacacatctatacacaacatgtacagattaagttcaccatcttatatgggagtgc-ttgtggtgcttcaaaacaattac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87684674 220 -  96509753 caattcttcctttcacttgaacacttaatgaccacggtcaggttattaactgacctaacttcaataccgttgtgttcaaaggaagagagagacccgaggagatgatgagatgggggaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcaccgtcttatatgggagtgctttgcggtgcttcaaaacaattac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82511431 220 +  90941950 caattcttcctttcacttgaacacttaatGACCACGGTCAGGTTATTAACTGACCTAACTTCAATACCGTTGTGTTcaaaggaagagagagacccGAGGAGAAGATGAGATGGGGTAACACCCGGTTGGCAGCAGTCTGAACACACATCTATACACAACATGTACAGATTAAGTTCGCCGTCTTATATGGGAGTGCTTTGTGGTGcttcaaaacaattac
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24771338 220 +  33263144 taattcttcctttcacttgaacacttaatgaccacggtcaggttattaactgacctaacttcaataccgttgtgttcaaaggaagagagagacccgaggagaagatgagatgggagaacacccggttggcagcagtctgaacacacatctatacacaacatgtacagattaagttcgccgtcttatatgggagtgctttgtagtgcttcaaaacaattac
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46158195   0 -  69331447 C
e calJac3.chrUn_GL286373      2017594   0 -   2117846 C

a score=18150.000000
s hg38.chr22_GL383582v2_alt    149066 13 +    162811 aaaagtaacatca
s panTro4.chr22              40973772 13 +  49737984 aaaagtaacatca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514108 13 +  46535552 aaaagtaacatca
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106719517 13 - 115148730 aaaagtaacatca
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82511651 13 +  90941950 aaaagtAACATCA
i papAnu2.chr10             C 0 I 54
s chlSab2.chr19              24771558 13 +  33263144 aaaagtaacatca
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46158195  0 -  69331447 C
e calJac3.chrUn_GL286373      2017594  0 -   2117846 C
e macFas5.chr10              87684894  0 -  96509753 C
e rheMac3.chr10              87028056  0 +  95678458 C

a score=225315.000000
s hg38.chr22_GL383582v2_alt    149079 295 +    162811 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggat--catgaggtcaggagattgagaccaacctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaaattagccaggtgtgatggcgggcacctgtagtcccagctactcgggaggctgacgcaggagaatggcgtgaacgcggcaggcagagcttgcagtgagccgaaatcgcaccactgcactccagcctgggcgac-agagcgagactccatctcaaaaaagaaaaaa
s panTro4.chr22              40973785 295 +  49737984 gcccggacgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgtgtggat--catgaagtcaggagattgagaccaacctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaaattagccaggtgtgatggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacgcggcaggcagagcttgcagtgagccgaaattgcaccactgcactccagcctgggcgac-agagcgagactccatctcaaaaaagaaaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514121 291 +  46535552 ggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagat--catgaggtcaggagatcgagaccaacctggctaacacggtgaaaccctgtctctactaaaaatac----aaattagccaggtgtgatggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaacggcgtgaacgcggcaggcagagcttgcagtgagccaaaatcacgccactgcactccagcctgggtgac-agagcgagactccatctcaaaaaagaaaaaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106719530 294 - 115148730 ggccgggcgcggtagctcatgcctgtaatcccagcactttgggaggccgaggtgggcggat--catgaggtcaggagatcgagaccaacctagctaacacggtgaagccccgtctctactaaaaacacaaaaaaattagccgggtgtgatggcaggcgcctgtagtcccagctactcaggaggctgagtaaggagaatggcgtgaacccaggaggcggagcttgcagtgagctgaaattgcgccactgcactccagcttgggcgac-agagcgagactccatctcaaagaag-aaaaa
i nomLeu3.chr7b             C 0 C 0
s papAnu2.chr10              82511718 294 +  90941950 ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggattgcctgaggtcaggagttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatac---aaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaac-caggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagggaaaatttatctcaggaaaaaaaaaa
i papAnu2.chr10             I 54 C 0
e canFam3.chr10              46158195   0 -  69331447 C
e calJac3.chrUn_GL286373      2017594   0 -   2117846 C
e chlSab2.chr19              24771571   0 +  33263144 C
e macFas5.chr10              87684894   0 -  96509753 C
e rheMac3.chr10              87028056   0 +  95678458 C

a score=5733.000000
s hg38.chr22_GL383582v2_alt    149374 3 +    162811 aaa
s panTro4.chr22              40974080 3 +  49737984 aaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514412 3 +  46535552 aaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106719824 3 - 115148730 aaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87028056 3 +  95678458 aaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87684894 3 -  96509753 aaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82512012 3 +  90941950 aaa
i papAnu2.chr10             C 0 I 7
e canFam3.chr10              46158195 0 -  69331447 C
e calJac3.chrUn_GL286373      2017594 0 -   2117846 C
e chlSab2.chr19              24771571 0 +  33263144 C

a score=13133.000000
s hg38.chr22_GL383582v2_alt    149377 10 +    162811 agtaacatcg
s panTro4.chr22              40974083 10 +  49737984 agtaacatcg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514415 10 +  46535552 agtaacatcg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106719827 10 - 115148730 agtaacatcg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87028059 10 +  95678458 agtaacatca
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87684897 10 -  96509753 agtaacatca
i macFas5.chr10             C 0 C 0
e canFam3.chr10              46158195  0 -  69331447 C
e calJac3.chrUn_GL286373      2017594  0 -   2117846 C
e chlSab2.chr19              24771571  0 +  33263144 C
e papAnu2.chr10              82512015  7 +  90941950 I

a score=813558.000000
s hg38.chr22_GL383582v2_alt    149387 481 +    162811 atgatcactgatcacagatcttcatgacagataaca---attttaaaagtttaaggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaagcgggtggatcatctgagaacaggagttcgagaccagcctagccaatacggagaaaccccgtctctactaaaaatacaaaattagcagggcgtgatggcgcatgcctgtaatcccagctactcgggaggctaaggcaggagaatcacttgaaccccggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagtgaaaatctctctcagaaaa-aaaaaaaaaagtttaaaatattcaggccaggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaaca-------------------------cagtgaaacccca-cctcta
s panTro4.chr22              40974093 478 +  49737984 atgatcactgatcacagatcttcatgacagataaca---attttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaagcgggtggatcgtctgagatcaggagttcgagaccagcctagccaatacagagaaaccccgtctctaccaaaaatacaaaattagcagggcgtgatggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccccggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatctctctcag---a-gaaaaaaaaagtttaaaatattcgggccaggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaaca-------------------------cagtgaaacccca-cctcta
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514425 480 +  46535552 acgatcactgatcacagatcttcatgacagataaca---attttaaaagtttaaggctgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagtggatcatctgaggtcaggagtttgagaccagcctggccaatacggagaaaccctgtctctaccaaaaatacaaaattagcagggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccccagaggcggagatggcagtgagccaaaatcgcgccattgcactccagcctggggaacaagagcgaaaatctatctcag--aa-aaaaaaaaaagtttaaaatattcgggccaggtgtggtgactcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaaca-------------------------cagtgaaaccccaccctcta
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106719837 478 - 115148730 acgatcactgatcacagattttcatgacaggtaaca---attttaaaagtttaaggatgagcgcggtggctcacgcctataatcccagcactttgggaggccgaagtgggtggattgtctgaggtcaggagtttgagaccagcctggccaatacagagaaaccccatctctactaaaaatacaaaattagcagggcgtggtggcgcacgcctggaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggagaatgcagtgagccaaaatcgcaccattgcactccagcctggggaacaagagcgaaaatctatctcag---a-aaaaaaaaaagtttaaaatatgcgggccagctgtggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggcagatcacttcaggttaggagttccagaccagtctggccaaca-------------------------cggtgaaacccca-cctcta
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87028069 485 +  95678458 atgatcactgattatagatcttcgtgacagataataac-attttaaaagtttaaggctgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggcgggtggattgcctgaggtcaggagttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggaaaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcag---g-aaaaaaaaaaaaatttaatattcgggccaggtgtggtggctcacgcctgtaatcccagcactttgggagccggaggcaggcagatcgcttgaggtcaggagttcgagaccagcttgtccaacannnnnnnnnnnnnnnnnnnnnnnnn--------------------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87684907 481 -  96509753 atgatcactgattatagatcttcgtgacagataataacaattttaaaagtttaaggctgggcgctgtgactcatgcctgtaatcccagcactttgggaggccaaggcgggtggattgcctgaggtcaggagttcgagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcag---gaaaaaaaaaaaaaatttaatattcgggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccgagacaggcagatcacttcaggtcaggagttccagaccagtctggccaaca-------------------------tggtgaaattcca-cctcta
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24771571 480 +  33263144 atgatcactgatcatagatcttcatgacagataataacaattttaaaagtttaaggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggagggtggattgcctgaggtcagaagttcaagaccagcctggccaatacagagaaaccccgtctctactaaaaatacaaaattagcagggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaa-ccaggaggcggagattgcagtgagccaaaatcacgccattgcactccagcctggggaacaagagcgaaaatttatctcag---g-aaaaaaaaatttttttaatattcgggccaggtgtggtggctcatgcctgtaatcccagcactttgggaggccgagacaggcagatcacttcaggtcaggagttccagaccagtctggccaaca-------------------------tggtgaaattcca-cctcta
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46158195   0 -  69331447 C
e calJac3.chrUn_GL286373      2017594   0 -   2117846 C
e papAnu2.chr10              82512015   7 +  90941950 I

a score=13766.000000
s hg38.chr22_GL383582v2_alt    149868 14 +    162811 ctaaaaataaaaat
s panTro4.chr22              40974571 14 +  49737984 ctaaaaataaaaat
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514905 14 +  46535552 ctaaaaataaaaac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106720315 14 - 115148730 ctaaaaataaaaat
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87028554  5 +  95678458 ---------caaaa
i rheMac3.chr10             C 0 I 1
s macFas5.chr10              87685388 14 -  96509753 ctaaaaaaacaaaa
i macFas5.chr10             C 0 I 1
s chlSab2.chr19              24772051 14 +  33263144 ctaaaaatacagaa
i chlSab2.chr19             C 0 I 1
s calJac3.chrUn_GL286373      2017594 12 -   2117846 ctaaatacaaaa--
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46158195  0 -  69331447 C
e papAnu2.chr10              82512015  7 +  90941950 I

a score=960405.000000
s hg38.chr22_GL383582v2_alt    149882 383 +    162811  
s panTro4.chr22              40974585 383 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37514919 383 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106720329 379 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87028560 494 +  95678458  
i rheMac3.chr10             I 1 C 0
s macFas5.chr10              87685403 407 -  96509753  
i macFas5.chr10             I 1 C 0
s papAnu2.chr10              82512022 393 +  90941950  
i papAnu2.chr10             I 7 C 0
s chlSab2.chr19              24772066 404 +  33263144  
i chlSab2.chr19             I 1 C 0
s calJac3.chrUn_GL286373      2017606 378 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46158195   0 -  69331447 C

a score=849477.000000
s hg38.chr22_GL383582v2_alt    150265 256 +    162811 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatcattactg-taagtctggcaatgttctaaaagctttagttatgaactaatttaactggca-cagccacccacgaggtaggtacaattatta-tttccattttctagacaacgaaacagagg--cagaatagtca-tttgcttgacgtcacattgcaaacaaggggcagagctgggattcaaaaatcaggcgactggctgcagagatcatgctctA
s panTro4.chr22              40974968 256 +  49737984 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatgattactg-taagtctggcaatgttctaaaagctttagttatgaactaatttaactggca-cagccacccacgagggaggtacaattatta-tttccattttctagacaacgaaacagagg--cagaatagtca-tttgcttgacgtcacattgcaaacaaggggcagagctgggattcaaaaatcaggcgactggctgcagagatcatgctctA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37515302 258 +  46535552 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatgatgactgttaagtctggcaatgttctaaaagctttagttatgaactaatttaactggcaccaaccacccacaaggtaggtacaattatta-tttccattttctagacaacgaaacagagg--cagaatagtca-tttgcttgaggtcacattgcaaacaaatggcagagctgggattcaaaaatcaggcgactggctgcagagatcatgctctA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106720708 256 - 115148730 TTCCAAA-GCTTCTAGGTGGTAATaataatagctaaaatttatctaatgattactg-taagtctggcaatgttctaaaagctttagttatgaactaatttaactggca-caaccacccacgaggtaggtacaattatta-tttccattttctagacaacgaaacagagg--cagaatagtta-tttgcttgaggtcacattgcaaacaagtggcagagctaggattcaaaaatcaggcaactggctgcagagatcatgctctA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87029054 256 +  95678458 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatgattact--taagtctggcaatgttctaaaagctttagttatgaactaatttaactggca-caaccacccatgaggtaggtacaattattattttccattttctagacaaaaaaagacagg--cagaatagtta-tttgcttgaggtcacattgcaaacaagtggcagacctgggattcaaaaatcaggggactggctgcagagaccacactctA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87685810 256 -  96509753 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatgattact--taagtctggcaatgttctaaaagctttagttatgaactaatttaactggca-caaccacccatgaggtaggtacaattattattttccattttctagacaaaaaaagacagg--cagaatagtta-tttgcttgaggtcacattgcaaacaagtggcagacctgggattcaaaaatcaggggactggctgcagagaccacactctA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82512415 254 +  90941950 TTCCAAA-GCTTCTAGGTGGTAATAACAATAGCTAAAATTTATCTAATGATTACT--TAAGTCTGGTAATGTTCTAAAAGCTTTAGTTATGAACTAATTTAACTGGCA-CAACCACCCACGAGgtaggtacaattattattttccattttctagacaaaaaaaGACAGG--CAGAATAGTTA-TTTGCTT--GGTCACATTGCAaacaagtggcagagctgggattcaaaaaTCAGGGGACTGGCTGCAGAGACCACACTCTA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24772470 257 +  33263144 TTCCAAA-GCTTCTAGGTGGTAATaacaatagctaaaatttatctaatgattact--taagtctggcaatgttctaaaagctttagttatgaactaatttaactggca-caaccacccacgaggtaggtacaattattattttccattttctagacaaaaaaagagagg--cagaatagttattttgcttgaggtcacattgcaaacaagtggcagagctgggattcaaaaatcaggggactggctacagagaccacactctA
i chlSab2.chr19             C 0 I 308
s calJac3.chrUn_GL286373      2017984 257 -   2117846 TTCCAAAGGCTTCTAGATGGTAACGataatagctaaaatttatctaatggttacta-taagtctggcaacgctctaaaagctttagtgatgaactaatttaactagca-cgaccacccataaggtaggtacaattatta-tttccattttctagacaatgaaacagagt--aagaatagtta-tttgcttgaggtcacactgcaaaaatgtggcagagctgggattcaaaaatcaggtgaccagctgcaaagaccatgctctA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46158195 239 -  69331447 TATCAAA-TTTTCTAGATGGTTat---aataggtaaactttatctagtgattactg-tgaaacaggcaatatcctaaaagtgttcatcattaactaatttaattagca-caaccac-----aggtaagtacaattaata-tttccatttt-taggcaagaaaacaaaggcacagaaaagtta-cttgattggtatcatactactaatacgtggtagagctgggatccaaaagttaagtagttggct----------tgctcta
i canFam3.chr10             C 0 C 0

a score=1770977.000000
s hg38.chr22_GL383582v2_alt    150521 565 +    162811  
s panTro4.chr22              40975224 565 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37515560 562 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106720964 570 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87029310 556 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87686066 560 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82512669 559 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24773035 558 +  33263144  
i chlSab2.chr19             I 308 C 0
s calJac3.chrUn_GL286373      2018241 548 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46158434 572 -  69331447  
i canFam3.chr10             C 0 C 0

a score=229780.000000
s hg38.chr22_GL383582v2_alt    151086 88 +    162811 aactcaaatcttcaac-------------ttttttttttttctgagacagagtcttgctctgtcccccccaggctggagtgcagtggcgc--catctcagttc
s panTro4.chr22              40975789 85 +  49737984 aactcaaatcttcaac--------------tttttttttttctgagacagagtcttgctctgt--cccccaggctggagtgcagtggcgc--catctcagttc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37516122 89 +  46535552 AACTCAAATCTTCAAC------------tttttttttttttctgagacagagtcttgctccgt--cccccaggctggagtgcagtggcgcataatcttggttc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106721534 86 - 115148730 aactcaaatcttcaac-------------tttttttttttcctgagacacagtcttgctctgt--cccccaggctggagtgcagtggcgc--catctcagttc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87029866 97 +  95678458 AACTCAAATCTTCAACtc--ttttttttttttttttttttcctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgc--catctcagttc
i rheMac3.chr10             C 0 M 239
s macFas5.chr10              87686626 99 -  96509753 AACTCAAATCTTCAACTCttttttttttttttttttttttcctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgc--catctcagttc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82513228 92 +  90941950 AACTCAAAtcttcaactc-------tttttttttttttttcctgagatggagtcttgctctgt--cccccaggttggagtgcagtggcgc--catctcagttc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24773593 93 +  33263144 AACTCAAATCTTCAACTC------tttttttttttttttccctgagatggagtcttgctctgt--cccccaggctggagtgcagtggcgc--catctcagttc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2018789 90 -   2117846 acctcaaatcttcaac---------ttgtgtttatttatttatgagacggagtctcactctgt--tgcccagtctggagtacagtggcac--attctcagttc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46159006  0 -  69331447 C

a score=179979.000000
s hg38.chr22_GL383582v2_alt    151174 90 +    162811 actgcgacctccgcctcccgggttcatacgactctcctgcctcagcctcccaagtagctgggattacaagcacccgccatcacgcccggc
s panTro4.chr22              40975874 90 +  49737984 actgcgacctccgcctcccgggttcatacgactctcctgcctcagcctcccaagtagctgggattacaagcacccgccatcacgcccgcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37516211 81 +  46535552 actgcaacgtcc--------agttcaagcga-tcttgtgcgtcagcctcccaagtagctgggattacaggcatgagccaccaagcccagc
i ponAbe2.chr22             C 0 I 1365
s nomLeu3.chr7b             106721620 90 - 115148730 actgcgacctccgcctcctgggttcacacgactctcctgcctcagcctcccaagtagctgggattacaggcacccgccatcatgcccggc
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87686725 90 -  96509753 actgcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcacccaccatcacgcctggc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82513320 90 +  90941950 actgcgacctccgcctcccgggttcgtacaattctcctgcctcagcctccaaagtagctgggattacaggcacccaccatcatgcctggc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24773686 90 +  33263144 actgcgacctccgcctcccgggtttgtacaattctcctgcctcagcctccaaagtagctgggattacaggcacccaccatcatgcctggc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2018879 86 -   2117846 actgcgacctccgtctcccggtttcatataattctcctgcctcaccctcccaagtagctgggattacaggcacct----tcatgccaggc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46159006  0 -  69331447 C
e rheMac3.chr10              87029963 239 +  95678458 M

a score=113824.000000
s hg38.chr22_GL383582v2_alt    151264 52 +    162811 taatttctgtatttttagtaaggagggggtttcaccatgttggccaggctgg
s panTro4.chr22              40975964 52 +  49737984 taatttctgtatttttagtaaggagggggtttcaccatgttggccaggctag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37517657 52 +  46535552 taatttctgtatttgtagtcaggacggggtttcaccattttgaacaggctgg
i ponAbe2.chr22             I 1365 C 0
s nomLeu3.chr7b             106721710 52 - 115148730 taatttttgtatttttagtaaggagggggtttcaccatgttggccaggctgg
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87686815 52 -  96509753 taatttttgtatttttagtaaggagggggtttcaccatgtcggccagggtgg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82513410 52 +  90941950 taatttttgtatttttagtaaggaggggatttcaccatgtcggccagggtgg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24773776 52 +  33263144 taatttttgtatttttagtaaggagggggtttcaccatatcggccagggtgg
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2018965 52 -   2117846 taatttttgtatttttagtagagatagggtttcaccatgttggtcaggctgc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46159006  0 -  69331447 C
e rheMac3.chr10              87029963 239 +  95678458 M

a score=544312.000000
s hg38.chr22_GL383582v2_alt    151316 223 +    162811 tctcgaactcctgacctcagctgatctgcctgcctcagtctcccaaagtgctctgggattacaggccttagccagcgcgcctgggcttcaacttgtattaaaatgatcctcgttggctagtgccgtcagtcacctggaaaaag-------acatc-------------acacccaaagcctctaattatttctataaacaatttttcaaataccatgtccagcacacaaaca--tatgaacaaag
s panTro4.chr22              40976016 223 +  49737984 tctcgaactcctgacctcagctgatctgcctgcctcagtctcccaaagtgctctgggattacaggccttagccaccgcgcctgggcttcaacttgtattaaaatgatcctcgttggccagtgccgtcagtcacctggaaaaag-------acatc-------------acacccaaagcctctaattatttctataaacaatttttcaaataccatgtccagcacacaaaca--tatgaacaaag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37517709 223 +  46535552 tctcgatctcctgacctcaggtgatctgcctgcctcagtctcccaaagtgctctgggattgcaggccttagccactgcgcctggGCTTCAACTTGTATTAAAATGATCCTCGTTGGCTAGTGCCGTCAGTCACctggaaaaag-------acatc-------------acacccaaagcctctaattatttctataaacaatttttcaaataccatgtccagcacacaaaca--tattaacaaag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106721762 219 - 115148730 tctcgaactcctgacctcaggtgatctgcctgcctcagtctcccaaagcgctctgggattacaggccttagccaccacgcctgggcttcaacttgtattaaaatgatcctcgttggctagtgccgtcagtcacctggaaaaag-------acatc-------------acacgcaaagcctc----tatttctataaacaatttttcaaataccatgtccagcacacaaaca--tatgaacaaag
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87686867 223 -  96509753 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccgcgcctggGCTTCAACTTGTATTAAAATGATCCTTATTGGCTAGTGCGGTCAGTCACctggaaaaag-------acatc-------------acactcaaagcctctaattatttctataaacaatttttcaaataccatatctagcacacaaaca--tatgaacaaag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82513462 219 +  90941950 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccgcgcctgggcttCAACTTGTATTAAAATGATCCTTATTGGCTAGTGCAGTCAGTCACCTGGAAAAAG-------ACATC-------------ACATTCAAAGCCTC----TATTTCTATAAACAATTTTTCAAATACCGTATCTAGCACACAAACA--TATGAACAAAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24773828 223 +  33263144 tctcgaactcctgacctcaggtgttctgcctgcctctgtctcccaaagtgctctgggattacaggtgttagccaccacgcctggGCTTCAACTTGTATTAAAATGACCCTTATTGGCTAGTGCGGTCAGTCACctggaaaaag-------acatc-------------acactcaaagcctctaattatttctataaacaatttttcaaataccatatctagcacacaaaca--tatgaacaaag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2019017 219 -   2117846 tcttgaactcctgacctcag-caatctgcccgccttggcctcccaaagtg--ctgggattataggcattagccaccatgcttggctttcaacttgtattaaaatgatcctgttctgctagtgccgttagtcacctggaaaaag-------acatc-------------acacccaaagtctctaatt-tttccataaagaagttttcaagtaccacatccagcacacaaaca--tatgaacaaag
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46159006 168 -  69331447 tctcaaactc-----------------------------------------------------------------------------tcgacttggattaacgtgatcctagtttgctagtcccctcaggcacctggaaaaagcaaataaaaatccattttggaaaagacatcgaaggcctctaattatttctataaataatgtttcaaataccatgtccagcacacaaacaagaatagacaaaa
i canFam3.chr10             C 0 C 0
e rheMac3.chr10              87029963 239 +  95678458 M

a score=289343.000000
s hg38.chr22_GL383582v2_alt    151539 92 +    162811 taccatgagtaagaaccatgagaggcagttatagatccaaaggaactccaaatactggagatatcaggagactataaaagaattatatttag
s panTro4.chr22              40976239 92 +  49737984 taccatgagtaagaaccatgagaggcagttatagatccaaaggaactccaaatactggagatatcaggagactataaaagaattatatttag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37517932 92 +  46535552 taccatgagtaagaaccatgacaggcagttatagatccaaaggaactccaaatactggagatatcgggagactataaaagaattgtatttag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106721981 92 - 115148730 taccatgagtaagaaccttgagaggcagttataaatccaaaggaactccaaatactggagatatcgggagctgataaaaagactatatttag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87030202 91 +  95678458 TACCATGAGTAAGAACCACGAGAGGCAGTTatagatccaaaggaactccaaa-actggagatatcaggcgactataaaagaactatatttag
i rheMac3.chr10             M 239 C 0
s macFas5.chr10              87687090 91 -  96509753 taccatgagtaagaaccacgagaggcagttacagatccaaaggaactccaaa-actggagatatcaggcgactataaaagaactatatttag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82513681 91 +  90941950 TACCATGAGTAAGAACCACGAGAGGCAGTTATAGATCCAAAGGAACTCCAAA-ACTGGAGATATCAGGTGACTATAAAAGAACTatatttag
i papAnu2.chr10             C 0 I 811
s chlSab2.chr19              24774051 91 +  33263144 taccatgagtaagaaccacgagaggcagttatagatccaaaggaactccaaa-actggagatatcaggcgactataaaagaactatatttag
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2019236 88 -   2117846 tactatgagaaagaaccatga---acagtcagagatccaaaggaactccaaatactggagatatcaggagactaaaaaacaacta-atttat
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46159174 87 -  69331447 cact----gtaagaaccatcaaaaacagtcacagacccaaagggactccagataatggaattgacagaagattataaaacaactatattta-
i canFam3.chr10             C 0 C 0

a score=407241.000000
s hg38.chr22_GL383582v2_alt    151631 159 +    162811 tatgttctaggaaataaaag-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaatgtagcagacttgaaaagaatcacaactgaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----aattaaaagcagattaatc
s panTro4.chr22              40976331 159 +  49737984 tatgttctaggaaataaaag-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaatgtagcagacttgaaaaaaatcacaactgaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----aattaaaagcagattaatc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518024 159 +  46535552 tatgttctaggaaataaaag-cgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaacatagcagacttgaaaagaatcacaactgaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----aataaaaagcagattaatc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106722073 154 - 115148730 tatgttctaggaaataaaag-tgaagtttgaaaaatttagcagggaacaggaatccataaaaaacaacgtagccgacttg-----aatcacaactgaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----agttaaaagcagattaatc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87030293 156 +  95678458 tatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcat---aaacaatgtagcagatttaaaaagaatcacaacagaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----aattaaaagcagactaatc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87687181 156 -  96509753 tatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcat---aaacaatgtagcagatttaaaaagaatcacaacagaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----aattaaaagcagactaatc
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24774142 159 +  33263144 tatgttccaggaaataaaag-tgaagtttgaaaaatttagcaggcaacaggaattcatgaaaaacaatgtagcagatttaaaaagaatcacaacagaaaaatacagtaagatattggtaagaactatccattgagtta-----tta-----aattaaaagcagactgatc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2019324 159 -   2117846 taagttccaggaaataaaag-caatgtttgaaaaatttaagagggaaaagaaatctataaaaaac-----agcagatttgaaaagaatcacaattgaaaaatacagtaagatatgggtaagaactatccattgagttattacttta-----aattaaaagcagattaact
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46159261 152 -  69331447 -ctgttttagaaaataaaagccaaagcttaaaaaatttagcagagaacaggaatccataaaaagcaatgtagcagattttaaaagaaccaaaactgaaaaatacaataag------------cccattcaccgagttc-----ttaattccaactaaacacagattagtc
i canFam3.chr10             C 0 I 52
e papAnu2.chr10              82513772 811 +  90941950 I

a score=9367.000000
s hg38.chr22_GL383582v2_alt    151790 4 +    162811 ggct
s panTro4.chr22              40976490 4 +  49737984 ggct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518183 4 +  46535552 agct
i ponAbe2.chr22             C 0 I 1
s nomLeu3.chr7b             106722227 4 - 115148730 agct
i nomLeu3.chr7b             C 0 I 1
s rheMac3.chr10              87030449 4 +  95678458 ggct
i rheMac3.chr10             C 0 I 1
s macFas5.chr10              87687337 4 -  96509753 ggct
i macFas5.chr10             C 0 I 1
s chlSab2.chr19              24774301 4 +  33263144 ggct
i chlSab2.chr19             C 0 I 1
s calJac3.chrUn_GL286373      2019483 4 -   2117846 ggct
i calJac3.chrUn_GL286373    C 0 I 1
e canFam3.chr10              46159413 52 -  69331447 I
e papAnu2.chr10              82513772 811 +  90941950 I

a score=42714.000000
s hg38.chr22_GL383582v2_alt    151794 14 +    162811 ggcgcggtggctca
s panTro4.chr22              40976494 14 +  49737984 ggcatggtggctca
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518188 14 +  46535552 ggcgtggtggctca
i ponAbe2.chr22             I 1 C 0
s nomLeu3.chr7b             106722232 14 - 115148730 ggtgtggtgggtca
i nomLeu3.chr7b             I 1 I 43
s rheMac3.chr10              87030454 14 +  95678458 ggcgtggtggctca
i rheMac3.chr10             I 1 C 0
s macFas5.chr10              87687342 14 -  96509753 ggcgtggtggctca
i macFas5.chr10             I 1 C 0
s papAnu2.chr10              82514583 14 +  90941950 ggcgcggtggctca
i papAnu2.chr10             I 811 C 0
s chlSab2.chr19              24774306 14 +  33263144 ggcgtggtggctca
i chlSab2.chr19             I 1 C 0
s calJac3.chrUn_GL286373      2019488 14 -   2117846 ggtgtggtggctca
i calJac3.chrUn_GL286373    I 1 C 0
e canFam3.chr10              46159413 52 -  69331447 I

a score=91673.000000
s hg38.chr22_GL383582v2_alt    151808 43 +    162811 tacttgtaattccagcactttgggaggctggggcaggtggctc
s panTro4.chr22              40976508 43 +  49737984 tacttgtaattccagcactttgggaggctggggcaggtggctc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518202 43 +  46535552 tacttgtaattccagcactttgggaggctggggcaggtggctc
i ponAbe2.chr22             C 0 C 0
s rheMac3.chr10              87030468 43 +  95678458 tacttgtaattccagcactttggaaggttgaggcaggtggctc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87687356 43 -  96509753 tacttttaattccagcactttggaaggttgaggcaggtggctc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82514597 43 +  90941950 agcctgtaatcccagcactttgggaggccgagacgggcggatc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24774320 43 +  33263144 tacttgtaattccagcactttggaaagttgaggcaggtggctc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2019502 43 -   2117846 cacctgtaatcccagcactttgggaggctgacacaagaggctc
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46159413 52 -  69331447 I
e nomLeu3.chr7b             106722246 43 - 115148730 I

a score=810562.000000
s hg38.chr22_GL383582v2_alt    151851 342 +    162811 acttgaggccaggagttgaagaccagcttggccatcatggtgaaactccatctctact-aaaagtac-aaaaattggccaggtgtaggggcacacacctgtggtcccagctactcgagaggttaaggcacaagaactgcttgaacccaggaggcagagggtgcagtgagagccaagatcgtgccactgcactgcaccccagcctgggcgaaagagtgagactcttgtctc-------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaagaa---aaaaaacacttgtaatggatgccatttaa
s panTro4.chr22              40976551 342 +  49737984 acttgaggccaggagttcaagaccagcttggccatcatggtgaaactccatctctact-aaaagtac-aaaaattggccgggtgtaggggcacacacctgtggtcccagctactcgagaggttaaggcacaagaactgcttgaacccgggaggcagagggtgcagtgagagccaagatcgtgctactgcactgcaccccagcctgggcgaaagagtgagactcttgtctc-------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaagaa---aaaaaacacttgtaatggatgccatttaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518245 345 +  46535552 acttgaggccaggagttcaagaccagcttggccatcatggtgaaactccatctctact-aagagtac-aaaaattggccgggtgtaggggcacacacctgtggtcccagctactcgagaggctaaggcacaagaactgcttgaacccgggaggcggagggtgcagtgagagccaaaatcatgccactgcactgcaccccagcctgggcgaaagagtgagactcttgtctc-------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctacccagaatgaaaaatagaaaagaaaagaaaaaacacttgtaatggatgccatttaa
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106722289 343 - 115148730 attctaggccaggagttcaagaccagcttggccatcatggtgaaactccatctatact-aaaagcac-aaaaattggccgggtggaggggcacacacctgtggtcccagctactcgagaggctaaggcacaagaactgcttgaacccgggaggcggagggtgcagtgacagccaagatcgtgccactgcactgcaccccagcctgggcgcaagagtgagactcttgtctc-------aaaaaaacgcagattagtcaaagagaagactgattaact-gaaaacaggtcaaagtaatctatctagaatgaaaaatagaaaagaaa--aaaaaacacttgtaatggatgccatttaa
i nomLeu3.chr7b             I 43 C 0
s rheMac3.chr10              87030511 337 +  95678458 atttgaggccaggagttcaagaccagcctggtcatcacggt----catcatctctact-aaaagtac-aaaaattggccaggtgtggtagcacacacctatggtcccagctacttgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgcagtgagagccaagatcatgccactgcactgcactccagcctgggggaaagagtgagactcttgtctc---aaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaatagaaaaga----aaaaaacacttgtaatggatgccatttaa
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87687399 338 -  96509753 acttgaggccaggagttcaagaccagcctggtcatcacggt----catcatctctact-aaaagtac-aaaaattggccagatgtggtagcacacacctatggtcccagctacttgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgcagtgagagccaagatcatgccactgcactgcactccagcctgggggaaagagtgagactcttgtctc--aaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacaggtcaaagtaatctacacggaatgaaaaatagaaaaga----aaaaaacacttgtaatggatgccatttaa
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82514640 270 +  90941950 ac--gaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaactagccgggcgaggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagt--gagctgagatccggc-----cacagcactccagcctgggcgacagagcaagactc-cgtctc--aaaaaaaaaaaaa---------------------------------------------------------------------aaaaaaga----aaaaaacacttgtaATGGATGCcatttaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24774363 337 +  33263144 acttgaggccaggagttcaagaccagcctggtcat-atggt----catcatctctact-aaaagtac-aaaaattggccaggtgtggtagcacacacctatggtcccagctactcgagaggctaaggcacaagaactgcttgaaccaaggaggtggagggtgtagtgagagccaagatcatgccactgcactgcactccagcctgggggaaagagtgagactcttgtctc-aaaaaaaaaaaaaagcagattggtcaaagagaa----gattaatt-gaagacagttcaaagtaatctacacggaatgaaaaacagaaaag-----aaaaaccacttgtaatggatgccatttaa
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2019545 340 -   2117846 acttgaggccagcagttcaagaccagcctagccatcctgatgaaaccccatctctactaaaaaatac-aaaaattggccaggtgtgggggtacacgtctgtggtcccagctactcgagaggctgaggcacaagaattgcttgcaaccaggaggtggaggttgcagt--gagccaagatcatgc-----cacttcactctagcctggacgacagagtaagactcttgtcaaaaaaaaaaaaaaaaagcagattagtcaaagagaa----gattaattggaagacacgccaaaataacctacccagaatgaagaacagaaaagaa---aaacaaaacttgtaatggataccattaaa
i calJac3.chrUn_GL286373    C 0 I 494
e canFam3.chr10              46159413  52 -  69331447 I

a score=574624.000000
s hg38.chr22_GL383582v2_alt    152193 254 +    162811 tcccagcactttaggagg-cttaggcgggcaga--------tcaggaagtcaggagatcgagaccatcctggctaacacagtgaaaccccgtgtctactaaaaatacaaaaaattagccaggcgtggtaataagtgcctgtaagtcccagctactcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccaccgcactccagcctgggcgacagagcgagacttcgcctc
s panTro4.chr22              40976893 254 +  49737984 tcccagcactttaggagg-cttaggcgggcaga--------tcaggaagtcaggagatcgagaccatcctggctaacacagtgaaaccccgtgtttactaaaaatacaaaaaattagccaggcgtggtaataagtgcctgtaagtcccagctattcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccactgcactccagcctgggtgacagagcgagacttcgtcaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518590 261 +  46535552 tcccagcactttacgagg-cttaggcgggcagatcaggaggtcaggaggtcaggagatctagaccatcctggctaacacagtgaaaccctgtgtctactaaaaatacaaaaaattagccaggcatggtaatacgtgcctgt-agtcccagctactcgggaggctgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcacaactgcactccagcctgggtgacggagcgagacttcgtctc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106722632 253 - 115148730 tcccagcactttaggagg-cttaggcaggcaga--------tcaggaggtcaggagatcgagaccatgctgggtaacacagtgaaaccccgtgtctactaaaaatacaaaaaattagccaggcgtggtgatacgtgcctgt-agtcccagctactcgggaggccgaggcagaagaatcacttgaacccaggaggcggaggttgcagtgagccgaaatcgcaccactgcactccagcctgggcgacagagagagacttcgtctc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87030848 254 +  95678458 tcccagcactttaggaggatttaggcaggcaga--------tcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaacacaaaaaattagccaggtgtagtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87687737 254 -  96509753 tcccagcactttaggaggatttaggcaggcaga--------tcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaacgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82514910 254 +  90941950 tcccagcactttaggaggatttaggcaggcaga--------tcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaatgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcagttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24774700 254 +  33263144 tcccagcactttaggaggatttaggcaggcaga--------tcaggaggtcaggagatcgagaccatcttggctaacacggtgaaaccctgtgtctacttaaaatgcaaaaaattagccaggtgtggtgatgcatgcctgt-agttccagttacttgggaggctgaggcaggagaatcgcttgaacctgggaggcggcggttgcagtgagccgagatctcaccactgcgctccagcctggatgacagagtgagaatctgtctc
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46159413  52 -  69331447 I
e calJac3.chrUn_GL286373      2019885 494 -   2117846 I

a score=418539.000000
s hg38.chr22_GL383582v2_alt    152447 183 +    162811 aaaaaaaaaaaaaaaa------aaaaaa-------------------cagaaaagaaagg-gtgactacaaggttgaatgtatccctgtatgggtggactcttagaatgagaagggaatggaggcaaggcagtaagtgaggagaagtattgggaattttccagaacaaataagagatatca-ccaaagaatcaagaatcttggtgaatac
s panTro4.chr22              40977147 187 +  49737984 aaaaaaaaaaaaaaaa------aaaaaa---------------aaatcagaaaagaaagg-gtgactacaaggttgaatgtatccctgtatgggtggactcttagaatgagaagggaatggaggcaaggcagtaagtgaggagaagtattgggaattttccagaacaaataagagatatca-ccaaagaatcaagaatcttggtgaatac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37518851 190 +  46535552 aaaaaaaaaaaaaaaa------aaaaaaaa----aaaaag---aaatcagaaaagaaagg-gtgactacaaggttgaacgtatccctgtatggttg-----ttagaatgagaagggaatggaggcaaggccataagtgaggagaagtattgggaattttccagaacaaataagagatatca-ccaaacaatcaagaatcttggtgaatac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106722885 173 - 115148730 aaaaaaagaaa-----------------------------------tcacaaaagaaagg-gtgactacaaggttgaacatatccttgtatggttggactcttagaatgagaagggaatggaggcaaggcgataagtgaggagaagtattgggaattttccagaacaaataagagatatca-ccaaagaatcaagaatcttggtgaatac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87031102 202 +  95678458 aaaaaaaaaaaaaaaaaaaaaaaagaagaa---gaaaaag---aaatcacaaaagaaagg-gtgactaaaaggttgaacatatccctgtatggttggactcttagaatgagaagggaatgaaggcaaggcagtaagtgaggagaattactgggaattttccagaacaaataagagatacca-ccaaagattcaagaatcttagtgaatac
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87687991 187 -  96509753 aaaaaaaaaaaaaaaa------------------aaaaag---aaatcacaaaagaaagg-gtgactaaaaggttgaacatatccctgtatggttggactcttagaatgagaagggaatgaaggcaaggcagtaagtgaggagaattactgggaattttccagaacaaataagagatacca-ccaaagattcaagaatcttagtgaatac
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82515164 192 +  90941950 aaaaaaaaaaaaaaag------aagaagaa---gaaaaag---aaatc----aaaaaagg-gTGACTAAAAGGTTGAACATATCCCTGTATGGTTGGACTCTTAGAATGAGAAGGGAATGCAGGCAAGGCAGTAAGTGAGGAGAATTACTGGGAATTTTCCAGAACAAATAAGAGATACCA-CCAAAGATTCAAGAATCTTAGTGAATAC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24774954 196 +  33263144 aaaaaaaaaaaaaaag---aagaagaagaa---gaaaaag---aaatcacaaaagaaagg-gtgactaaaaggttgaacatatccctgtatggttggactcttagaatgagaagggaatgcaggcaaggcagtaagtgaggagaattactaggaattttccagaacaaataagagat---a-ccaaagattcaagaatcttagtgaatac
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46159465 187 -  69331447 aaaaaatgaaaagggc------aaaaaatacaggagaaaggttaagtgacaaaaaaaggacacaaagagaaggtctaacacatccatgaa--actggagtcttggaattagaa-agaacgagggcaaagcaatatggga-aagaactgctgggaattctccagaacagcgaagagacaccagccacacactcgagaa-------------
i canFam3.chr10             I 52 C 0
e calJac3.chrUn_GL286373      2019885 494 -   2117846 I

a score=586966.000000
s hg38.chr22_GL383582v2_alt    152630 208 +    162811 aaaacagATGGTCTCTATTATCTAGAATGTCTTCCAAAAATAACATGAACCTGTTCTGTAAGTATAGTA-CCACCACAATT--------AAA----TATCTATTGTGGTC--ATATTAGGGGTTATCATAGGGTATACTATATAGACGAACTTACAACACTCTCAGCACGTGAGGAGCTCAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTGAAGATCT
s panTro4.chr22              40977334 208 +  49737984 aaaacagATGGTCTCTATTATCTAGAATGTCTTCCAAAAATAACATGAACCTGTCCTGTAAGTATAGTA-CCACCACAATT--------AAA----TATCTATTGTGGTC--ATATTAGGGGTTATCATAGGGTATACTATATAGACGAACTTATAACACTCTCAGCACGTGAGGAGCTCAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATCT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37519041 209 +  46535552 aaaacagATGGTCTCTATTATCTAGAATGTCTTCCAAAAATAACATGAACCTGTTCTGTAAGTATAGTACCCACCATAATT--------AAA----TATCTATTGCGGTC--ATACTAAAGGTTATCATAGGGTATACTATATAGACAAACTTATAACACTCTCAGCACGTGAGGAGCTCAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106723058 208 - 115148730 aaaacagATGGTCTCTATTATCTAGAATGTCTTCCAAAAATAACATGAACCTGTTCTGTTAGTATAGTA-CCACCACAGTT--------AAA----TGTCTATTGTGGTC--ATACTAGGGGTTATCATAGGGTATACTATATAGACAAACTTATAACATTCTCGGCACGTGAGGAGCTCAAGGTCAAGGATTTACAAGAGGTATTTTCAACTGTAAAGATCT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87031304 201 +  95678458 aaaacagATGGTCTCTATTACCTAGAAGGTCTTCCAAAAATAACATGAACCTGTTCTCTCAGTA------C--CCACAGTT--------AAA----TATCTACTGTGGTC--CTACTAGGGGTTATCACAGGGTATACTATATAGACAAACTTATAACACTCTCAGTGTGTGAGGAACTCAAAGTCAAGGATTTAGGAGAGGTATTTTCAACTGTAAAGATTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87688178 201 -  96509753 aaaacagATGGTCTCTATTACCTAGAAGGTCTTCCAAAAATAACATGAACCTGTTCTCTCAGTA------C--CCACAGTT--------AAA----TATCTACTGTGGTC--CTACTAGGGGTTATCACAGGGTATACTATATAGACAAACTTATAACACTCTCAGTGTGTGAGGAACTCAAAGTCAAGGATTTAGGAGAGGTATTTTCAACTGTAAAGATTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82515356 201 +  90941950 AAAACAGATGGTCTCTATTACCTAGAAGGTCTTCCAAAAATAACATGAACCTGTTCTCTCAGTA------C--CCACAGTT--------AAA----TATCTACTGTGGTC--CTACTAGGGGTTATCACAGGGTATACTATATATACAAACTTATAACACTCTCAGTGTGTGAGGAACTCAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24775150 201 +  33263144 aaaacagATGGTCTCTATTACCTAGAAGGTTTTCCAAAAATAACATGAACCTGTTCTCTCAGTA------C--CCACAGTT--------AAA----TATCTATTGTGGTC--CTACTAGGGGTTATCACAGGGTATACTATATAGACAAACTTATAACACTCTCAGTGTGTGAGGAACTCAAAGTCAAGGATTTAGAAGAGGTATTTTCAACTGTAAAGATTT
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2020379 203 -   2117846 aaaCCATATCATCTCTATTATCTAGAATATCCTCCAAAACTGACATGAACCTCCTTCTTTAGTA---------CCACAGTT--------AAACAATTATCTACGGTGGTCCTCTATGAGGGGTTATCATAGGCTATACTATACGGGCAAACTTACAACACTCTCAG--CGTGAGGAGCTCAACGTCAAAGATTT-TAAGAGGTATGTTCGACTGTAAACATCT
i calJac3.chrUn_GL286373    I 494 C 0
s canFam3.chr10              46159652 177 -  69331447 -------------------gtccAGAACGTCTTCTAAAAATGGCACGAACC-ACTCTCTAAGCATAGTG----CCACAGCTCATTAAACAAG----TCTCCACTGAGGTC--CTACTAGGGG--------------AATATAAAGGCAAAGCGGGGAC--TCCCAGCATGTGAGGAGTTCAAAGTTGAGCACTTAGAAGACAGCTGTTAAATCATAATCATCT
i canFam3.chr10             C 0 I 5157

a score=23382.000000
s hg38.chr22_GL383582v2_alt    152838 8 +    162811 CTCTACCC
s panTro4.chr22              40977542 8 +  49737984 CTCTACCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37519250 8 +  46535552 CTCTACCT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106723266 8 - 115148730 CTCTACCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87031505 8 +  95678458 CCCTACCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87688379 8 -  96509753 CCCTACCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82515557 8 +  90941950 CCCTACTC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24775351 8 +  33263144 CCCTACCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2020582 8 -   2117846 CCCTACCC
i calJac3.chrUn_GL286373    C 0 I 5413
e canFam3.chr10              46159829 5157 -  69331447 I

a score=131905.000000
s hg38.chr22_GL383582v2_alt    152846 57 +    162811 ggccaggcgaggtggctcacacctataatcccagcactttgggaggctgaggcacgc
s panTro4.chr22              40977550 57 +  49737984 ggccaggcaaggtggctcacacctataatcccagcactttgggaggctgaggcacgc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37519258 57 +  46535552 ggccaggtgaggtggctcatgcctataatcccagcactttcggaggctgaggcaggc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106723274 57 - 115148730 ggccaggcgaggtggctcacgcctataatcccagcactttgggaggctgaggcaggc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87031513 57 +  95678458 Agccagggaaggtggctcacgcctataatcccagcactttgggaggccaaggtaggc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87688387 57 -  96509753 Agccagggaaggtggctcacgcctataatcccagcactttgggaggccaaggtaggc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82515565 57 +  90941950 AGCCAGggaaggtggctcacgcctataatcccagcactttgggaggccaaggtaggc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24775359 57 +  33263144 Agtcaggcaaggtggctcacgcctacaatcccagcactttgggaggccaaggcaggc
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46159829 5157 -  69331447 I
e calJac3.chrUn_GL286373      2020590 5413 -   2117846 I

a score=1891505.000000
s hg38.chr22_GL383582v2_alt    152903 720 +    162811  
s panTro4.chr22              40977607 717 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37519315 694 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106723331 759 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87031570 717 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87688444 720 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82515622 720 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24775416 715 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2026003 716 -   2117846  
i calJac3.chrUn_GL286373    I 5413 I 1
e canFam3.chr10              46159829 5157 -  69331447 I

a score=901902.000000
s hg38.chr22_GL383582v2_alt    153623 402 +    162811 actgatcacttgacgtcagaaatttgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatataaaaattag-caggcatggtggtgggtgcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgcagtgagctgagatcacaccactgcactccagcctgggcaacagagcaagactccctctcaaaaacaaacaaaaaaaGGTCAaatatgaactggactggagttaataataaaatatcaatactgtatatcaagtgtagcaaatgcaccacactaatatgagatattagtaatagtggaacctatggttggattgagggagggtaaacaggaactctcttattgctca-ttttttctg
s panTro4.chr22              40978324 402 +  49737984 actgatcacttgacgtcagaaatttgagaccagcctggccaacacgatgaaaccctgtctctactaaaaatataaaaattag-caggcatggtggtgggtgcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgcagtgagctgagatcacaccactgcactccagcctgggcaacagagcaaaactccctctcaaaaacaaacaaaaaaaGGTCAaatatgaactggacttgagttaataataaaatatcaatactgtatatcaagtgtagcaaatgcaccacactaatatgagatattagtaatagtggaacctatggttggattgagggagggtaaacaggaactctcacattgctca-ttttttctg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37520009 402 +  46535552 actgatcacttgacgtcaggagtttgagaccaggctggccaacacggcgaagccctgtctctactaaaa--acaaaaattagccgggcatggaggtgggtgcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaaccctggaggt-ggaggttgccgtgagctgagatcacaccactgcactccagcctgggcgacagagcaagactccctctcaaaaacaaacaaaaaaaGGTCAaatatgaactggacttgagttaataataaagtatcaatactgtgtaacaagtgtagcaaatgcaccacactaatatgagatattagtaatagtggaatctgtggttagattgagggagggtaaacaggaactctcttattgctcatttttttctg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106724090 398 - 115148730 actgatcacttgatgtcaggagtttgagaccagcctggccaacacggcaaaactctgtctctactaaaaatacaaaaatgagccgagcatggtggtgggtgcctgtaatcccagctactcagaaggctgaggcaggagaatcacttgaaccctggaggt-ggaggttgcagtgagctgagatcataccactgcactccagcctgggcgacagagcaagactccctctcaaaaacaaacaaaaaaaGGTCAaatatgaactggacttgagttaataataaagtatcaatactgtagatcaagtgtagcaaatgcaccacactaat-----atattagtaatagtggaacctatggttggattgagggagggtaaacagaaactctcttattgctca-ttttttctg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87032287 392 +  95678458 atggatcacctgaggtcaggagttcgaaaccaacctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtggatgcctgtaatcccagctactcagaagggtgaaccaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactccagcctgggcgacagaacaagacgctgtctcaaaaacaaac-aaaaaaGGTCAAATATGAACTGAACTTG-----------AAgtatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacattagtaatagtggaaactatggccggattgagggagggtaaacaggaactctcttattgctca-ttttttctg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87689164 392 -  96509753 atggatcacctgaggtcaggagttcgaaaccaacctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtggatgcctgtaatcccagctactcagaagggtgaaccaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactccagcctgggcgacagaacaagacgctgtctcaaaaacaaac-aaaaaaGGTCAAATATGAACTGAACTTG-----------AAgtatcaatattgtatatcaagtgtagcaaatgcaccacactaatatgatacattagtaatagtggaaactatggccggattgagggagggtaaacaggaactctcttattgctca-ttttttctg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82516342 403 +  90941950 atggatcacctgaggtcaggagttcgaaaccaacctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtgggtgcctgtaatcccagctactcagaagggtgaagcaggagaatcgcttgaaccctggagatgggaggttgcagtgagctaagatcatactactgcactccagcctgggcgacagaacaagaggctgtctcaaaaacaaac-aaaaaaggtcaaATATGAACTGAACTTGAGTTAATAATAAAGTATCAATATTGTATATCAAGTGTAGCAAACGCACCACACTAATATGATACATTAGTAATAGTGGAAACTATGGCCGGATTGAGGGAGGGTAAACAGGAACTCTCTTATTGCTca-ttttttctg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24776131 403 +  33263144 atggatcacctgaggtcaggagttcgaaaccaacctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggtgggtgcctgtaatcccagctactcagaagggtgaagcaggagaattgcttgaaccctggagatgggaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagcaagaggctgtctcaaaaacaaac-aaaaaaGGTCAaatatgaactgaacttgagttaataataaagtatcaatattgtacatcaagtgtagcaaatgcaccacactaatatgatacattagtaatagtggaaactacagccggattgagggagggtaaacaggaactctcttattgctca-ttttttctg
i chlSab2.chr19             C 0 I 16
e canFam3.chr10              46159829 5157 -  69331447 I
e calJac3.chrUn_GL286373      2026719   1 -   2117846 I

a score=27510.000000
s hg38.chr22_GL383582v2_alt    154025 14 +    162811 taaacctaaaactg
s panTro4.chr22              40978726 14 +  49737984 taaacctaaaactg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37520411 14 +  46535552 taaacctaaaactg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106724488 14 - 115148730 taaacctaaaactg
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87032679 14 +  95678458 taaacctaaaactg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87689556 14 -  96509753 taaacctaaaactg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82516745 14 +  90941950 taaacctaaaactg
i papAnu2.chr10             C 0 C 0
e canFam3.chr10              46159829 5157 -  69331447 I
e calJac3.chrUn_GL286373      2026719  1 -   2117846 I
e chlSab2.chr19              24776534 16 +  33263144 I

a score=450679.000000
s hg38.chr22_GL383582v2_alt    154039 187 +    162811 ctctaagcaataaagtctactaacatttctcttaaaaaGTtaatgtatcaggaaaaatgaaccacaatgacacagcacttcatacccataggtatggctataggaaagaaaacaaaaaattacaagtgttggtgatgatgtggagagactggaaccctcacatattgctggtgggggccaggcacac
s panTro4.chr22              40978740 187 +  49737984 ctctaagcaataaagtctactaacatttctcttaaaaaGTTAatgtatcaggaaaaacgaaccacaatgacacagcacttcatacccagcaggatggctgtaggaaagaaaccaaaaaattacaagtgttggtgatgatgtggagagactggaaccctcacatattgctggtgggGGCCAGGGACAC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37520425 187 +  46535552 ctctaagaaataaagtctactaacatttttcttaaaaaGTtaatgtatcaggaaaaacgaaccacaatgagacagcacttcatacccagtaggatggctataggaaagaaaacaaaaaattacaaatgttggtgatgatgtggagagattggaaccctcacatattgctggtgggGGCCAGGCACAC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106724502 187 - 115148730 ctctaagaaataaagtctactaacatttttcttaaaaaGTtaatgtatcaggaaaaacaaaccacaatgagatagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatgtggagagactgggaccctcacatattgctggtaggGGCCAGGCACAC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87032693 186 +  95678458 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCatgtatcaggaaaaacaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-gggGCCAGGCACAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87689570 186 -  96509753 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-ggggccaggcacag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82516759 186 +  90941950 ctctaagaaataaagtctactaacatttttcttaaaaagttcatgtatcaggaaaaacaaaccacaatgagacagcaCTTCATACCCAGTAGGATGGCTataggaaggaaaacaaaaaattacaagtgtTGGTGATGATATGGAGAGATTGGAACCCTCACATATTGCtggt-ggggccaggcacag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24776550 186 +  33263144 ctctaagaaataaagtctactaacatttttcttaaaaaGTTCATGTATCAGGAAAAACaaaccacaatgagacagcacttcatacccagtaggatggctataggaaggaaaacaaaaaattacaagtgttggtgatgatatggagagattggaaccctcacatattgctggt-ggggccaggcacag
i chlSab2.chr19             I 16 C 0
e canFam3.chr10              46159829 5157 -  69331447 I
e calJac3.chrUn_GL286373      2026719   1 -   2117846 I

a score=2154869.000000
s hg38.chr22_GL383582v2_alt    154226 769 +    162811  
s panTro4.chr22              40978927 769 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37520612 759 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106724689 760 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87032879 765 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87689756 765 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82516945 769 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24776736 763 +  33263144  
i chlSab2.chr19             C 0 I 338
s calJac3.chrUn_GL286373      2026720 762 -   2117846  
i calJac3.chrUn_GL286373    I 1 C 0
e canFam3.chr10              46159829 5157 -  69331447 I

a score=23256.000000
s hg38.chr22_GL383582v2_alt    154995 7 +    162811 aaaaatg
s panTro4.chr22              40979696 7 +  49737984 aaaaatg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37521371 7 +  46535552 aaaaatg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106725449 7 - 115148730 aaaaatg
i nomLeu3.chr7b             C 0 I 299
s rheMac3.chr10              87033644 7 +  95678458 aaaaatg
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87690521 7 -  96509753 aaaaatg
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82517714 7 +  90941950 aaaaatg
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24777837 7 +  33263144 aaaaaTG
i chlSab2.chr19             I 338 C 0
s calJac3.chrUn_GL286373      2027482 7 -   2117846 aaaaatg
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46159829 5157 -  69331447 I

a score=1671225.000000
s hg38.chr22_GL383582v2_alt    155002 618 +    162811  
s panTro4.chr22              40979703 617 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37521378 612 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106725755 656 - 115148730  
i nomLeu3.chr7b             I 299 C 0
s rheMac3.chr10              87033651 590 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87690528 590 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82517721 591 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24777844 589 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2027489 619 -   2117846  
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46159829 5157 -  69331447 I

a score=1205248.000000
s hg38.chr22_GL383582v2_alt    155620 392 +    162811 CCTTTACTCCTGTCTCATTCCCATGGCTACTCATCT-CGGCCCTGCAAAAACATGAAACGTGGAAGAACAAGAT--------------------------------GCTATCCGGGAGGTTTCTAACACTAAATTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCTAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATA---TTGTGATACCTTCTGCAATGCCCTTTTAAGGGGGTCAAGACAATTCATGTAT----TCACCCTAAGACAGCTTCCTCCAGCGCGATGTCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTTTGCTAAGATCACTAGCTCTTACT----AAGCTTTGGTAGAATTAACCAATGTTTTCTAGCGCCTTTCCCTCTCTATGGCCAA
s panTro4.chr22              40980320 395 +  49737984 CCTTTACTCCTGTCTCATTCCCATGGCTGCTCATCT-CGGCCCTGCAAAAACATGAAACGTGGAAGAACAAGAT--------------------------------GCTATCCGGGAGGTTTCTAACACTAAATTAAATACTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATGCCCTTTTAAGGGGGTCAAGACAATTCATGTAT----TCACCCTAAGACAGCTTCCTCCAGCGCAATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTTTGCTAACATCACTAGCTCTTACT----AAGCTTTGGTAGAATTAACCAATGTTTTCTAGCGCCTTTCCCTCTCTATGGCCAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37521990 393 +  46535552 CCTTTACTCCTGTCTCATTCCCATGGCTACTCATCT-TGGCCCTGCAAAAACATGAAACGTGGAAGAACAAGAT--------------------------------GCTATCTGGGAGGTTTCTAACACTAAATTAAATA--GTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGAGTCCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATGTCCTTTTAAGAGAGTCAAGACAATTCATGTAT----TCACCCTAAAATAGCTTCCTCCAGCGCGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCAATTTTGCTAAGATCACTAGCTTTTACT----AAGCTTTGGTAGAATTAACCAGTGTTTTCTAGCACCTTTCCCTCTCTATGGCCAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106726411 372 - 115148730 CCTTTACTCCTATCTCATTCCCATGGCTATTCATCT-CGGCCCTGCAAAAACAT-----------------------------------------------------------GGGAGGTTTCTAACACTAAATTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCTTTAAGAACTGAGCCCAAGTACTAAAAACTAACCTTTCACCATCATCTTTCTAAAACATTCTTGTGATACCTTCTGCAATGCCCTTTTAAGGGGGTCAAGACAATTCATGTATTCACTCACCCTAAGACAGCTTCCTCCAGCACGATGCCAACCTTTCTGCCCACCTGCTCAGTA---CCTTGATTTTGCTAAGATCACTAGCTCTTACT----AAGCTGTGGTAGAATTAACCAATGTTTTCTAGCACCTTTCCCTCTCTATGGCCAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87034241 423 +  95678458 CCTTTACAC----CTCATTCCCATGGCTATGCATCT-CGGCCCTGCAAAAACATGAAACGTGGAAGAACAGAATGGTGGTTGCAAAGGACTGGGAGAAGGGAGCAAGCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTGGAAGGGCCTCAAGACAATTCATGTAT----TCACCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTTTGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTTTCTAGAGCCTTTCCCTCTCTATGGCCAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87691118 423 -  96509753 CCTTTACAC----CTCATTCCCATGGCTATGCATCT-CGGCCCTGCAAAAACATGAAACGTGGAAGAACAGACTGGTGGTTGCAAAGGACTGGGAGAAGGGAGCAAGCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGAAGGGCCTCAAGACAATTCATGTAT----CCACCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTTTGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTTTCTAGAGCCTTTCCCTCTCTATGGCCAA
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82518312 423 +  90941950 cctTTACAC----CTCATTCCCATGGCTATACATCT-CGGCCCTGCAAAAACATGAAACGTGGAAGAACAGACTGGTGGTTGCAAAGGACTGGGAGAAGGGAGCAAGCTATCTGGGAGGTTTCTAACACTAAACTAAATATTGTTTCTTTGAACACTGACCTACTTCTCCCTTAAGAACTGCGTGCAAGTACTAAAAACTAACCTTTCACCATTATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACGCCCTTTGAAGGGCCTCAAGACAATTCATGTAT----TCACCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTTTGCCAAGATCGCTAGCTTTCACT----AAGCTTTACTAGAATTAACCAATGTTTTCTAGAGCCTTTCCCTCTCTAtggccaa
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24778433 423 +  33263144 CCTTTACAC----CTCATTCCCATGGCTATGCATCT-TGGCCCTGCAAAAACATGAAACGTGGAAGAACTGATTGGTGGTTGCAAAGGACTGGGAGAAGGGAGCAAGCTATCTGGGAGGTTTCCAACACTAAATTAAATATTGTTTATTTGAACACTGACCTAATTCTCCCTTAAGAACTGCATGCAAGTACTAAAAACTAACCTTTCACCATCATCTTCCTAAAATATTCTTGTGATACCTTCTGCTACACCTTTTGAAGGGCGTCAAGACAATTCACGTAT----TCACCCTAAGACAGGTTCCTCCAGTGTGATGCCAACCTTTCTGCCCACCTGCTCAGGA---CCTCGATTTTGCCAAGATCGCTAGCTCTCACT----AAGCTTTACTAGAATTAACCAATGTTTTCTAGAGCCTTTCCCTCTCTATGGCCAA
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2028108 398 -   2117846 TCTTTACTCCTGTCTCATTCTCATGGCTATTCATCT-TGGCCCTGCAAAAAGATGAAATGTGGAAGAATAAGAG--------------------------------CCTATCTGAGAAGTTTCTAATGCTAAA-TACAAACTGTTTCTTTGAACACTGACCTACTTCTCTCTTAAGAACTGAGTGCAAGTACTAAAAACTAACCTTTCACCACCATCTTCCTAAAATATTCTTGTGATACCTTCTGCAATTCCCTTTTAAGGGAGTGAAAACAATTCATGTAC----TGACCCTAAGACAGCTTCCTCCTGCATGATGCCAACCTTTCTGCTCACCTGCTCAAGA---CCTCAATTTTGCTAAGATCACTAGCTCTTACTCTTAATGTGTTTCTAGAATTAACCAAGGTTTACTAGCACTTTTCCCTCTCTATGGCCTA
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46164986 353 -  69331447 CCATCAATCCTGGCTCCCTCCCATGACTTTCGATCTCCAGCCCTGGGAAA-------CTGAGGAAATACTCAAT------------------------------AAGCTAT---GTAAATTTCTAACACTAAATTCACAATTGTTT-----AATACCGACATACTTCTCCTGTAAGATCTG------AGCACTAAAAGCTAACCTTTCATCATCATCATCCTAAAATATCTTTG-GATATCTTCTGCAACGCACATTTA----------------------AT----T--------GGCTGCTTCCCACAGTATGATGCCAACTTTTCTGCCCACCTTCTTGGGATGTCCTCCATCTTGCTAAGGTCACTGGTTCTGACCCCAACCACTTCTCCAGAATCAACCATTGTTTCCTAGGGCTTTCCCTTCTCtatggctaa
i canFam3.chr10             I 5157 C 0

a score=459794.000000
s hg38.chr22_GL383582v2_alt    156012 158 +    162811 TTTTATTTTTAAATTTTatttatgtattttttggagagaaggtctcactacgttgcccagactggtctccaactcctcgcctcaagcaatcctcccacctcagcc-cctgaatagatggaattacaggcatgagccaccacagccagcTCTATGGTCA-A
s panTro4.chr22              40980715 158 +  49737984 TTTTAtttttaaattttatttatgtattttttggagagaaggtctcactacgttgcccagactggtctccaactcctcgcctcaagcaatcctcccacctcagcc-tctgaatagatggaattacaggcatgagccaccacagccagcTCTATGGTCA-A
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37522383 158 +  46535552 TTTTATTTTTAAATTTTACTTACGTAttttttggagaggaggtctcactacattgcccagactggtctccaactcctcgtctcaagcaatcctcccacctcagcc-tctgaatagatggaattacaggcacgagccaccacagccagcTCTATGGTCA-A
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106726783 157 - 115148730 TTTTAtttttaaattttatttatgtattttttggagaggaggtctcactacgttgcccagactggtctccaactcct-gcctcaagcaatcctcccacctcagcc-tctgaatagatggaattacaggcatgggccaccacagccagcTCTATGGTCA-A
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87034664 159 +  95678458 TTTTATTTTCAAATGTTatttatgtactttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcgcctcaagcaatcctcccacctcagccttctgaatagatggaattataggcatgagcccccacagccagcTCTATCGTCA-A
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87691541 159 -  96509753 TTTTATTTTCAAATGTTATTTATGTACtttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcgcctcaagcaatcctcccacctcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTATGGTCA-A
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82518735 149 +  90941950 ttttattttcaaatgttatttatgtactttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcgcctcaagcaa----------tcagccttctgaatagatggaattacaggcatgagcccccacagcCAGCTCTATGGTCA-A
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24778856 159 +  33263144 TTTTATTTTCAAATGTTATTTATGTACGttttggagaggaggtctcactacgttgcccaggctggtctccaactcctcgcctcaagcaatcctcccaccgcagccttctgaatagatggaattacaggcatgagcccccacagccagcTCTATGGTCA-A
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2028506 158 -   2117846 TTTTATTTTTAAATTATAtttatgt--tttttggagaggaggtctcactatgttgcccaggctggtctccaactcctcgtctcaagcaatcctcccacctcaaccttctgaatagctggaataacaggcatgagccaccagatccagcTCTTTGGCGGTA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46165339   0 -  69331447 C

a score=575941.000000
s hg38.chr22_GL383582v2_alt    156170 164 +    162811 ATTTTTACAACGTAttatcaatgatctag-ttgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactCATCCCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
s panTro4.chr22              40980873 164 +  49737984 ATTTTTACAAtgtattatcaatgatctag-ttgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactcatccCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTCGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37522541 164 +  46535552 ATTTTTACAAtgtattatcaatgatctag-ttgtctgtttcccacacaatactgttgaacagcctgaggacaagtactaggactcatccCCAAACTCTGAAAAA----CGGTGCTTCTC----AGTCATTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106726940 164 - 115148730 ATTTTTACAAtgtattatcaatgatctag-ctgtctgtttcccacacaatactgttgaacaccctgaggacaagtactaggactcatccCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTCATTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87034823 165 +  95678458 ATTCTTACAATGTATTATCAATGATCTAGTTTGTCTGTTTCCCATACAACACTGCTGAACACGCTGAGGACAAGTACTAGGACTCATCCCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87691700 165 -  96509753 ATTCTTACAAtgtattatcaatgatctagtttgtctgtttcccatacaacactgctgaacacgctgaggacaagtactaggactcatccCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82518884 165 +  90941950 ATTCTTACAATGTATTATCAATGATCTAGTTTGTCTGTTTCCCATACAACACTGCTGAACACGCTGAGGACAAGTACTAGGACTCATCCCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTTGTTTCCccatttggtttcttttcttctactctaAAATACTAGACCC
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779015 164 +  33263144 ATTCTTACAATGTATTATCAAAGATCTAG-TTGTCTGTTTCTCATACAACACTGCTGAACACGCTGAGGACAAGTACTAGGACTCATCCCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTTGTTTCCCCATTTGGTTTCTTTTCTTCTACTCTAAAATACTAGACCC
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2028664 162 -   2117846 ATTTTTACAATGTCGTATCAATGATCTAG-TTA--TGTTTCCTACACAATACTGTTGAACACCCTTAGGACAAGTACTAGGACTCATCCCCAAACTCTGAAAAA----TGGTGCTTCTC----AGTCGTTTTCCCATTTGGTTTCTGTTCTTCTACTCTAAAATGCTAGACCC
i calJac3.chrUn_GL286373    C 0 C 0
s canFam3.chr10              46165339 170 -  69331447 attttcataacgtattaatactgttctaacatgtctgtttccctcactatactgttgaacaccctgagggcaagtcctggaactCATCTCAGAACTCTGAAAAATAATTGCTGCTCCTCATCTAGTCGTTTCTCCATCTGGCTTCCTGTGTTCTAC---AGAAGAGCAGACCG
i canFam3.chr10             C 0 C 0

a score=346381.000000
s hg38.chr22_GL383582v2_alt    156334 181 +    162811 AATTTGCTTAAttctttttcttttt----tc------------tttttttt-ctgagat-ggagtctcactctgtca-cccaggctggagtgcactggtgtgatcttggctcactgcaacctccacctaccaggttcaagtgattctcttacctcagcctccgtgtagctggcgttacagg---------cgcatgccaccacgcccag
s panTro4.chr22              40981037 181 +  49737984 AATTTGCTTAAttctttttcttttt----tc------------tttttttt-ctgagat-ggagtctcactctgtca-cccaggctggagtgcactggtgtgatcttggctcactgcaacctccacctaccaggttcaagtgattctcttacctcagcctccgtgtagctggcgttacagg---------cgcatgccaccacgcccag
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37522705 183 +  46535552 AATATGCTTAAttctttttcttttt----tt------------ttttttttcctgagat-ggagtctcactctgtcaccccaggctggagtgcactgccgtgatcttggctcactgcaacctccacctcccaggttgaagtgattctcttacctcagcctccgtgtagctggcattacagg---------cgcatgctaccacgcccag
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727104 167 - 115148730 AATATGCtt-----------ttttt----tt------------tttttttc-ctgagataagagt----ctctgtca-cccaggctggagtgcactggcatgatcttggctcactgcaacctccacctcccaggttcaagtgattctcttacctcagcctccgtgtagctggcattacagg---------cgcatgctaccacgcccag
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87034988 197 +  95678458 AATATGCTTAAttctttttcgtttttttgtttgttttgttttgttttgttt-ttgagat-ggagtctcactctgtca-cccaggctgatgtgcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcggcctccgtgtagcttgcattacagg---------cacatgttaccacgcccag
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87691865 193 -  96509753 AATATGCTTAATTCTTTTTCAtttt----tttgttttgttttgttttgttt-ttgagat-ggagtctcactctgtca-cccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagcgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519049 192 +  90941950 AATATGCTTaattctttttcgtttt----tttg-tttgttttgttttgttt-ttgagat-ggagtctcactctgtca-cccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaaacgattctcttacctcagcctccgtgtagctggcattacagg---------cacatgttaccacgcccag
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779179 201 +  33263144 AATATGCTTAACTCTTTTTCGtttt----tttg-tttgttttgttttgttt-ttgagat-ggagtctcactctgtca-cccaggctgatgggcactggcatgatcttggctcactgcaacctccacctcccaggttcaagtgattctcttacctcagcctccgtgtagctggcattacaggcacatgttacacatgttaccacgcccag
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46165509  42 -  69331447 ---------------------------------------------------------------------------------------------ACTA--------------TACTTCATTCTTTACCTATC--------------------CCTCGCCCTCC----------------------------------------TGCCCAA
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      2028826   0 -   2117846 C

a score=152702.000000
s hg38.chr22_GL383582v2_alt    156515 75 +    162811 ctaactttcgtatttttggtagagacagggtttcg-ccatgttggccaggctggtctt-aaactctttacctcacct
s panTro4.chr22              40981218 75 +  49737984 ctaactttcgtatttttggtagagacagggtttcg-ccatgttggccaggctggtctt-aaactctttacctcacct
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37522888 77 +  46535552 ctaactttcgtatttttagtagagacagggtttcgcccatgttggccaggctggtcttgaaactctttacctcaCCT
i ponAbe2.chr22             C 0 M 192
s nomLeu3.chr7b             106727271 75 - 115148730 ctaactttcgtatttttagtagagacacggtttcg-ccatgttggccaggctggtctt-gaactctttacctcacct
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035185 71 +  95678458 ctaactttcatatttttagtagagatgcggtttcg-ccatgttgaccaggctggtctt-gaactcttttactt----
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87692058 71 -  96509753 ctaactttcatatttttagtagagatgcggtttcg-ccatgttgaccaggctggtctt-gaactcttttactt----
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519241 71 +  90941950 ctaactttcatatttttagtagagatggggtttcg-ccatgttgaccaggctggtctt-gaactcttttaCTT----
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779380 71 +  33263144 ctaactttcatatttttagtagagatggggtttcg-ccatgttgaccaggctggtctt-gaactcttttactt----
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165551  0 -  69331447 C
e calJac3.chrUn_GL286373      2028826  0 -   2117846 C

a score=40002.000000
s hg38.chr22_GL383582v2_alt    156590 23 +    162811 caagtgacccatccgcctcggcc
s panTro4.chr22              40981293 23 +  49737984 caagtgacccacccgcctcggcc
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106727346 22 - 115148730 caagtga-ccacccgctttggcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035256 23 +  95678458 caagtgactcacccgcctcggcc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87692129 23 -  96509753 caagtgactcacccgcctcggcc
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519312 23 +  90941950 CAAGTGactcacccgcctcggcc
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779451 23 +  33263144 caagtgactcacccgcctcggcc
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165551  0 -  69331447 C
e calJac3.chrUn_GL286373      2028826  0 -   2117846 C
e ponAbe2.chr22              37522965 192 +  46535552 M

a score=119057.000000
s hg38.chr22_GL383582v2_alt    156613 50 +    162811 tcccaaagtgctggga-tacaggcatgagtcaccaggcctggccTCAATAT
s panTro4.chr22              40981316 50 +  49737984 tcccaaagtgctggga-tacaggcatgagtcaccaggcctggccTCAATAT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523160 49 +  46535552 tcccaaagtgct-gga-tacaggcatgagtcaccagacctggccTCAATAT
i ponAbe2.chr22             M 192 C 0
s nomLeu3.chr7b             106727368 50 - 115148730 tcccaaagtgctggga-tacaggcatgaatcaccaggcctggccTCAATAT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035279 51 +  95678458 tcccaaagtgctgggattacaggcatgagtcaccaggcctggccTCAATAT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87692152 51 -  96509753 tcccaaagtgctgggattacaggcatgagtcaccaggcctggccTCAATAT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519335 51 +  90941950 tcccaaagggctgagattacaggcatgagtcaccaggcctggcctcaaTAT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779474 51 +  33263144 tcccaaagtgctgggattacaggcatgagtcaccaggtctggccTCAATAT
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165551  0 -  69331447 C
e calJac3.chrUn_GL286373      2028826  0 -   2117846 C

a score=616733.000000
s hg38.chr22_GL383582v2_alt    156663 256 +    162811 ACTTAATTCTTTACCTACATTGTTTCTCCTGGCTTCAAAAAGCTTCCTGACCACCAAAACTAATCCTTGGAAAAGGACAAGTCTTCCCTACACCAAAACTAAATACCA-TTGTTTGCCTTTTTCT-CGTACG--TGTTTTTCTCTACCTCTAAAATGATT----GCTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTGCCAATACCATAAT-CTTGCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAACACATTT
s panTro4.chr22              40981366 256 +  49737984 ACTTAATTCTTTACCTACATTGTTTCTCCTGGCTTCAAAAAGGTTCCTGACCACCAAAACTAATCCTTGGAAAAGGATAAGTCTTCCCTACACCAAAACTAAATACCA-TTGTTTGCCTTTTTCT-CGTACG--TGTTTTTCTCTACCTCTAAAATGATT----GCTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTGCCAATACCATAAT-CTTGCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAACACATTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523209 248 +  46535552 AC-----TCTTTACCTACATTG-TTCTCCTGGCTTCAAAAAGGTTCCTGACCACCAAAACTAA-CTTCAGAAAAGGAT--GTCTTCCCTACACCAAAACTAAATACCA-TTGTTTGCCTTTTTTTCCCTACA--TGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGCACCATAGAGGATACAGCAAGTGCCAATACCATAAT-CTTGCCCTCAGGGAGGACTGGGGAAGGAGGGCAAGAGTACATTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727418 238 - 115148730 ACTTAATTCTTTACCTACATAGTTTCTCCCGGCTTCAAAAAGGTTCCCCACCACCAAAACTAATCCTTGGAAAAGGACAGGTCTTCCCTACACCAAAACTAAATATCA-TTGTTTGACTTTTTTT-CCTAC---TGTTTTTCTCTGCCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGCACCGTAGAGGATACGGCAAGTACCAATACCATAAT-CTTGCCCTCAGGGAGGACTGGGGAAGG-----------------
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035330 257 +  95678458 ACTTAATTCTTTACCTACATTGTTTTTCATGGCTTCAAAAAGGTTCCTAACCACCAAAACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCACTTGTTTGTCTTTTTTT--CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGCGGACAATACCATAAT-CTTGCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAACACGTTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87692203 257 -  96509753 ACTTAATTCTTTACCTACATTGTTTTTCATGGCTTCAAAAAGGTTCCTAACCACCAAAACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCACTTGTTTGTCTTTTTTT--CTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGCGGACAATACCATAAT-CTTGCCCTCAGGGAGGACTGCGGGAGGAGGGCAAGAACACGTTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519386 257 +  90941950 ACTTAATTCTTTACCTACATTGTTTTTCATGGCTTCAAAAAGGTTCCTGACCACCAAAACTAATCCTCGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACcacttgtttgtcttttttt--ctaca-tTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGGGGACAATACCATAAT-CTTGCCCTCAGGGAGGACTGCGGGAGGAGGACAAGAACACGTTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779525 258 +  33263144 ACTTAATTCTTTACCTACATTGTTTTTCATGGCTTCAAAAAGGTTCCTGACCACCAAAACTAATCCTTGGCAAAGGACAAGTCTTCCCTACGCCAAAACGAAATACCACTTGTTTGTCTTTTTTT-CCTACA-TTGTTTTTCTCTACCTCTAAAATGATT----GTTTGTTCATGTGTTCAATGGACTGTAAAGGATATGGCAGGGGACAATACCATAAT-CTTGCCCTCAGGGAGGACTGCGGAAGGAGGGCAAGAACACGTTT
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46165551 239 -  69331447 ACTCAGCTTTT---------------------CTTCAAAAAGATTCCC--CCACCAAAAC-AATCCTTGAACAAGGACAAGTCTTACCTGTGCCAAAACTAAATGCCA-TTAATTCTATCTTTTG-TCTACCTTTGTTCTTCTCTACTTCAAAAACTATTCACAGTCTGCTCACATATTCAGTGCACCACAGAGAATATAAGGAGTGTTGACACTATAATCCTTGCCTTCAAAGAGGACTGGGGAAGAAGGGCGAGAACACGTTC
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      2028826   0 -   2117846 C

a score=382732.000000
s hg38.chr22_GL383582v2_alt    156919 167 +    162811 AGAAAGGTATAATAggctgggcac---ggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggcagatcac--------gaggtcaggagtttgagaccagcctggccaacatggtgaaacgccatctctaccaaaaatacaaaaattagccaggcgtggtggcgggt
s panTro4.chr22              40981622 175 +  49737984 AGAAAGGTATAATAggctgggcac---ggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggcagatcacgaggtcaggaggtcaggagtttgagaccagcctggccaacatggtgaaacgccgtctctaccaaaaatacaaaaattagccaggcgtggtggcgggt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523457 167 +  46535552 AGAAAGGTATAATAggccgggcac---ggtggttcacgcctataatcccaacattttgggaggctgaggcaggcggatcac--------aaggtcaggagtttgagaccagcctggccaacatggtgaaatgccgtctctaccaaaaatacaaaaattagccaggcgtggtggcgggt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727656 163 - 115148730 ----AGGTATAATAggccgggcac---ggtggctcatgcctgtaatcccagcattttgggaggttgaggcggacagatcac--------gagatcaggagtttgagaccagcctggccaacatggtgaaatactgtctctactaaaaatacaaaaattagccaggggtggtggtgggt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035587 167 +  95678458 AGAAAGGTATAATAggccgggcac---agtggctcatgcctgtactcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtgaaatctcgtctctactaaaaacacaaaaattagcacggcgtggtggcaggt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87692460 167 -  96509753 AGAAAGGTATAATAggccgggcac---agtggctcatgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtgaaatctcgtctctactaaaaacacaaaaattagcacggcgtggtggcaggt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519643 167 +  90941950 AGAAAGgtataataggccgggcgc---agtggctcatgcctgtaatcccagcattttgggaggccgacgtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtgaaaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcgggt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24779783 170 +  33263144 AGAAAGGTATAATAggccgggcgcggtggtggctcatgcctgtaatcccagcattttgggaggccgaggtgggcggatcac--------aaggtcaggagtttgagattagcctggccaacacggtgaaaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcaggt
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165790   0 -  69331447 C
e calJac3.chrUn_GL286373      2028826   0 -   2117846 C

a score=223602.000000
s hg38.chr22_GL383582v2_alt    157086 125 +    162811 gcctgtaatcccagctacttgggaggctgatgcaggagaactgcttgaacctgggaagcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactctgtc
s panTro4.chr22              40981797 125 +  49737984 gcctgtaatcccagctacttgggaggctgatgcaggagaattgcttgaacctgggaagcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactctgtc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523624 125 +  46535552 gcctgtaatcccagctactcgggaggctgatacaggagaatcgcttgaatctgggaggcaggggttgcagtgagccgagactgcgccactgcactccagcctggggaacagaacaagactccgtc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727819 125 - 115148730 gcctgtaatcccagctactcaggaggctgatgcaggagaatcgcttgaatttgggaggcaggggttgcagtgagccgagattgcgccactgcactccagcctgggggacagagcaagactccgtc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035754 125 +  95678458 gcctgtaataccagctactctggaggctgatgcaggagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcaagactccatc
i rheMac3.chr10             C 0 I 11
s macFas5.chr10              87692627 125 -  96509753 gcctgtaataccagctactctggaggttgatgcaggagaatcacctgaacccgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcaagactccatc
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24779953 125 +  33263144 gcctgtaataccagctactcgggaggctgatgcaggagaatcacctgaacctgggaggcaggggttgcagtgagccaagactgcactactgcactccagcctgggggacagagcacgactccatc
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165790   0 -  69331447 C
e calJac3.chrUn_GL286373      2028826   0 -   2117846 C
e papAnu2.chr10              82519810   0 +  90941950 C

a score=4007.000000
s hg38.chr22_GL383582v2_alt    157211 28 +    162811 ---tcaaaaaattaaaaaaaaaaaaaaaagg
s panTro4.chr22              40981922 28 +  49737984 ---tcaaaaaattaaaaaaaaaaaaaaaagg
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523749 24 +  46535552 ---tcaaaaaat----aaaaataaaaaaagg
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727944 26 - 115148730 ---tcaaaaaat--aaaaaaataaaaaagga
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87692752 11 -  96509753 ttgggggggaa--------------------
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24780078 26 +  33263144 ttgggggggaat--aaaaaaaagaaaaa---
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165790  0 -  69331447 C
e calJac3.chrUn_GL286373      2028826  0 -   2117846 C
e papAnu2.chr10              82519810  0 +  90941950 C
e rheMac3.chr10              87035879 11 +  95678458 I

a score=3525.000000
s hg38.chr22_GL383582v2_alt    157239 5 +    162811 aaaaa
s panTro4.chr22              40981950 5 +  49737984 aaaaa
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523773 3 +  46535552 aaa--
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727970 5 - 115148730 aaaaa
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035890 5 +  95678458 aaaaa
i rheMac3.chr10             I 11 C 0
s macFas5.chr10              87692763 5 -  96509753 aaaaa
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24780104 2 +  33263144 ---aa
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165790 0 -  69331447 C
e calJac3.chrUn_GL286373      2028826 0 -   2117846 C
e papAnu2.chr10              82519810 0 +  90941950 C

a score=328916.000000
s hg38.chr22_GL383582v2_alt    157244 164 +    162811 aGAAAGGTATAATAAAAAGCAAAAAGCAAAGATTAACGGTGCAC-CAGAAAATTACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAGATTTCATGGAGAAAAGTAACATTTGAGAAAGGCCTTGAAATATAACTATCTCAAAAGATGGAGAACAggc
s panTro4.chr22              40981955 157 +  49737984 aGAAAGGTATAAT-------AAAAAGCAAAGATTAAAGGTGCAC-CAGAAAATTACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAGATTTCATGGAGAAAAGTAACACTTGAGAAAGGCCTTGAAATATAACTATCTCAAAAGATGGAGAACAGGC
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523776 161 +  46535552 --aaaGGTATAATAAAAAGCAAAAAGCAAA-ATTAAAGGTGCAC-CAGAAAATCACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAGATTTCATGGAGAAAAGTAACATTTGAGAAAGGCCTTGAAATATAAGTATCTCAAAAGATGGAGAACAGTC
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106727975 164 - 115148730 aGAAAGGTATAATAAAAAGCAAAAAACAAAGATTAAAGGTGCAC-CAGAAAATTACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAAATTTCATGGAGAAAAGTAACATTTGAGAAAGGCCTTGAAATATAAGTATCTCAAAAGATGGAGAACAggc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87035895 156 +  95678458 agaaaGGGATAAT-------AAAAAGCAAAGATTAAAGGTGCAC-CAGACAATTACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAGATTTCATGGAGGAAAA-AAAATTTGAGAAAGGCCTTGAAATATAATTGTCTCAAAAGATGGAGAACTggc
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87692768 156 -  96509753 agaaagggataat-------aaaaagcaaaGATTAAAGGTGCAC-CAGACAATTACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAGATTTCATGGAGGAAAA-AAAATTTGAGAAAGGCCTTGAAATATAATTGTCTCAAAAGATGGAGAACTggc
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24780106 156 +  33263144 agaaAGGGATAAT-------AAAAAGCAAAGATTAAAGGTGCAC-CAGACAATTACAAACGT-CATGAAGGAAACATCCAGTTAAGGGAATGTTAGATTTCATGGAGGAAAA-AAAATTTGAGAAAGGCCTTGAAATATAATTGTCTCAAAAGATGGAGAACAggc
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46165790 158 -  69331447 AGAAGAGTATAAT-------AAAAAGCAAAGATTAAATGTACACATAGAAAATTACAAAATTCCATGAGAGAAACACCCAGTTATGGGGATGTTAGGTTTCATGGAAGAAGG-AGCATTTGAGAAATGCCTTGAAAGACTGAGATCTCCACATATGGAGAACAGGC
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      2028826   0 -   2117846 C
e papAnu2.chr10              82519810   0 +  90941950 C

a score=137297.000000
s hg38.chr22_GL383582v2_alt    157408 83 +    162811 tgcacgcggtggctcatacctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagacc
s panTro4.chr22              40982112 83 +  49737984 TGCAAgcggtggctcatgcctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagacc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37523937 83 +  46535552 TGCAcgcagtggctcatgcctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagacc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728139 83 - 115148730 tgcacgcggtggctcatgcctgtgatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagttagagacc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036051 81 +  95678458 cgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagatgggcggatcac--gaggtcaggagatcgagacc
i rheMac3.chr10             C 0 I 163
s macFas5.chr10              87692924 81 -  96509753 cgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagatgggcggatcac--aaggtcaggagatcgagacc
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24780262 83 +  33263144 tgcatgcggtggctcatgcctgtgatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttagagaca
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165948  0 -  69331447 C
e calJac3.chrUn_GL286373      2028826  0 -   2117846 C
e papAnu2.chr10              82519810  0 +  90941950 C

a score=60112.000000
s hg38.chr22_GL383582v2_alt    157491 37 +    162811 agcctggtcaacatggtg-aaatcccatctctactaa-a
s panTro4.chr22              40982195 37 +  49737984 agcctggtcaacatggtg-aaatcccatctctattaa-a
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524020 38 +  46535552 agcctggtcaacatggtgaaaaccccatctctactaa-a
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728222 37 - 115148730 agcctgatcaacatggtg-aaaccccatctctactaa-a
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036295 37 +  95678458 agcctggccaacatggtg-aaaccccatctctactaa-a
i rheMac3.chr10             I 163 C 0
s macFas5.chr10              87693005 38 -  96509753 atcctggctaacacggtg-aaactccgtctctactaaga
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24780345 37 +  33263144 agcctggccaacatggtg-aaaccccatctctactaa-a
i chlSab2.chr19             C 0 C 0
e canFam3.chr10              46165948  0 -  69331447 C
e calJac3.chrUn_GL286373      2028826  0 -   2117846 C
e papAnu2.chr10              82519810  0 +  90941950 C

a score=59716.000000
s hg38.chr22_GL383582v2_alt    157528 32 +    162811 aatataagaatttgcttggcgtggtggcaggc
s panTro4.chr22              40982232 32 +  49737984 aatataagaatttgcttggcgtggtggcaggc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524058 32 +  46535552 aatgtaagaatttgcttggcgtggtggcgggc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728259 32 - 115148730 aatgtaagaatttgcttggcgtggtggcgggc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036332 32 +  95678458 aatacaagaatttgcttggtgtggtggcgggt
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87693043 31 -  96509753 aatacaaaaaatagccgggcgaggtggc-agc
i macFas5.chr10             C 0 C 0
s chlSab2.chr19              24780382 32 +  33263144 aatacaagaatttgcttggtgtggtggcgggt
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2028826 32 -   2117846 aatacaaaaatttgcttggtctggtggcacat
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46165948  0 -  69331447 C
e papAnu2.chr10              82519810  0 +  90941950 C

a score=376305.000000
s hg38.chr22_GL383582v2_alt    157560 150 +    162811 gcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactgcactccagcctgggtgatagagcgagactccatctc--aaaaaaaaaaaaaaaaaaGA--TAA
s panTro4.chr22              40982264 152 +  49737984 gcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactgccctccagcctgggtgatagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaGA--TAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524090 154 +  46535552 gcctgtaatcccagctattcaggaggctgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagcc-----gagatggtgccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaTTAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728291 148 - 115148730 gcctgtaatcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagcc-----gagatggtgccactgcactccagcctgggtgacagagcgagactccatctc----aaaaaaaataaacaaaaa--TAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036364 144 +  95678458 gcctgtaaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcagtgagccaagtggagattgtgccactgcacgccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaa---------------
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87693074 143 -  96509753 gcctgtagtcccagctactcgggaggctgaggctggagaatggcgtgaacccgggaggcggagcttgcagtgagct-----gagatccggccactgcactccagcctgggctacagagcgagactccgtctcaaaaaaaaaaaaaaaa-----------
i macFas5.chr10             C 0 I 465
s papAnu2.chr10              82519810 149 +  90941950 gcctgtaaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcagtgagtcgagtggagattgtgccactgcactccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaa----------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24780414 155 +  33263144 gcctgtaaccccagctactcgggaggctgagacaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagtggagattgtgccactgcactccagcctgggaaacagagcgagactccaactcaaaaaaaaaaaaaaaaaaaaaaa----
i chlSab2.chr19             C 0 I 5
s calJac3.chrUn_GL286373      2028858 137 -   2117846 gcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtgaaggtttcggtgagcc-----gtgattgcaccaatccactccagcctaggaaac-gagcaaaactccacctcaaaaaaaaaaG----------------
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46165948   0 -  69331447 C

a score=47808.000000
s hg38.chr22_GL383582v2_alt    157710 14 +    162811 GATGGAGAACAGAA
s panTro4.chr22              40982416 14 +  49737984 GATGGAGAACAGAA
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524244 14 +  46535552 GATGGAGAACAGAA
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728439 14 - 115148730 GATGGAGAACAGAA
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036508 14 +  95678458 GATGGAGAACAGAA
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87693682 14 -  96509753 GATGGAGAACAGAA
i macFas5.chr10             I 465 C 0
s papAnu2.chr10              82519959 14 +  90941950 gatggagaacaGAA
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24780574 14 +  33263144 gaTGGAGAACAGAA
i chlSab2.chr19             I 5 C 0
s calJac3.chrUn_GL286373      2028995 14 -   2117846 GATGGAGAACAGAA
i calJac3.chrUn_GL286373    C 0 C 0
e canFam3.chr10              46165948  0 -  69331447 C

a score=1444912.000000
s hg38.chr22_GL383582v2_alt    157724 441 +    162811 AAGAGGACACGGACCCAGACCTGGAAATAAAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC--AACTGGGGAAACCAGGAGATGTGGTTAGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCAAGGTGTCTAAATTTAACTCAGTACACAAATGAAAAGGATACGACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAAGGTTACTATTCACGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACCATGCTCATTTAAACCACTACCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCACTAACTAGAAAGAAAAAATTAATAG
s panTro4.chr22              40982430 440 +  49737984 AAGA-GACACGGACCCAGACCTGGAAATAGAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC--AACTGGGGAAACCAGGAGATGTGGTTAGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCAAGGTGTCTAAATTTAACTCAGTACACATATGAAAAGGATACAACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAAGGTTACTATTCACGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTACCAATCTCTACT-TCCACA--AGCCCTGACCTGTCTCCTACTTGACTGGTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCACTAACTAGAAAGGAAAAATTAATAG
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524258 439 +  46535552 AAGATGACACAGACCCAGACCTGGAAATAGAGGCACCTCTGGGGACAC-CAAGCTGCAGTAGAGGATAC--AAGTGGGGAAACCAGGAGATGCGGCTAGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCAAGGTGTCTAAATTTAACTCAGTACACAAATGAAAAGGATACAACAAGAGCTACCTTTCAGAAGATTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGAGAAGAAGGGTTACTATTCACAAAGC--TACAAGAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGAC--GTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCGCTAACTAGAAAGAAAAAATTAATAG
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728453 438 - 115148730 AAGAGGACACGGACCCAGACCTGGAAATAGAGGCACCTCTGGGGACAC-CGAGCTGCAGCAGAGGATAC--GAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCATGGAACCCTGAAGACCAAGGCAAGGTGTCTAAATTTAACTCAGTACACAAATGAAAAGGATACGACAAGAGCTACCTTTC---AGATTTTCTGGCAGTAGTTGCAAAGACACGAGACCAGGGACTGGGGAAGAAGGGTTACTATTCATGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACCATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCGCATCTCTTCAAGACACCTCTCTTCAATTTCCTCACTTAAAATCGCTAACTAGAAAGAAAAAATTAATAG
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036522 438 +  95678458 AAGAGGACACAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATACAAAAGTGGGGAAACCAGGAGATGGAGCTGAAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTAAGGTGTCTAAATTTAATTCAGTCCATA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACTATTCACGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACA----AATAG
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87693696 442 -  96509753 AAGAGGACACAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATACAAAAGTGGGGAAACCAGGAGATGGAGCTGAAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTAAGGTGTCTAAATTTAATTCAGTCCATA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACTATTCACGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACAAATTAATAG
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82519973 440 +  90941950 AAGAGGACACAGACCCAGACCTGGAAATAGAGGCACCTCT-GGGACAC-CAAGCTGCAGCAGAGAATAC--AAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTAAGGTGTCTAAATTTAATTCAGTACACA-ATGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACTATTCACGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACTATGCTCATTCAAACCACTGCCGATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTTCCCTCTACATCTCTTCAAGACACCTCTCTTCAATTCCTTCACTTAAAATCGCTGACTAGAAAGGACAAATTAATAG
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24780588 439 +  33263144 AAGAGGACACAGACCCAGACCTGAAAATAGAGGCACCTCT-GGGACAC-GAAGCTGCAGCAGAGAATAC--AAGTGGGGAAACCAGGAGATGGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAAGACCAAGGTAAGGTGTCTAAATTTAATTCAGTACACA-AAGAAAAGGATATGACAAGAGCTACCTTTCAGAAGACTTTCTGGCAGTAGTTGGGAAGACACTAGACCAGGGACTGGGGAAGAAGGGTTACTATTCACGAAGC--TACAAGAGCTCAGGCACGTCCAGCACTATGCTCATTCAAACCACTGCCAATCTCTACT-TCCACA--AGCCTTGACCTGTCTCCTACTTGACTGGTT-CCTCCACATCTCTTCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACTAGAAAGGACAAATTAATAG
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2029009 421 -   2117846 TAGAGAACA------------TGGAAAGAGAGATGCCTCT--GGGCAC-AGAGCTACAGTAGAAGATAC--AAGTGGGTAAACTTGGAGATAGGGCTGGAGAGGCAGGGCAGGGTCCTACCGTGGAACCCTGAATACCAAGGCAAGGTATC-----ATAATTCAGTACACAAATGAGAAGGATATGATAAGAACTATCTTTCAGAAGATTTTCCAGCAGTAGTTGGGAAGACACTGGACCAGGGACTAGGAAAGAAGGGTTACTATTCATGAAGC--TACAAGAGCTCAGGCAGGTCCAGCACCACACTCATTCAAACCATTTCCAATCTCTACT-TCTACAACAGCCTTGACCTGTCTCCTACTTGACTGCTT-CCTCCATATC---TCAAGACACCTCTCTTCAATTCCCTCACTTAAAATCGCTGACCAGAAAGAAAAAATTAATgg
i calJac3.chrUn_GL286373    C 0 I 122
s canFam3.chr10              46165948 421 -  69331447 -AGAGGGCACGGTCACAGGCATGGGA------------CTGGGGACACAAAAGCCACAGGAGCGCACAC--ATGCAGGGAAGCTGGGAGATGGGCCTGGAAAGGCAGGGGAGTGTCCTACTGTGGAACCCTGAACAACAAGGCAAGGCATCTACATTTAATTCAGTACACAACTGAGAGGGACATGACAAGAGCTGTATTTCAGAAGCTATCCTGGCAGTAGTT----AGAAACTGGACCAGGGACTGGGGAAGA---GTTATCCTTCAGGAGGCATGACAGCAGCAGAAGCGGGTGTCCTACTTCCCTCATTCAAACTACTTCCCATCTCTAGTATCCACAACAGCCT-----TATCTCCTACTCAGCTGCTT-CCTAGGCATCTTCTCAAGGGACCCCTCTTTGAACTCCTTTGCTTAAATCACTAACTAAAAAGGAAAAAT-AATAG
i canFam3.chr10             C 0 C 0

a score=51263.000000
s hg38.chr22_GL383582v2_alt    158165 21 +    162811 TCTGTTCTACAGAAGTGACTT
s panTro4.chr22              40982870 21 +  49737984 TCTGTTCTACAGAAGTGACTT
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524697 21 +  46535552 TCTATTCTACAGAAGTGACTT
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728891 21 - 115148730 TCTGTTCTACACAAGCGATTT
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036960 21 +  95678458 TCTGTTCTAAAGAAGTGATTT
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87694138 21 -  96509753 TCTGTTCTAAAGAAGTGATTT
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82520413 21 +  90941950 TCTGTTCTAAAGAAgtgattt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24781027 21 +  33263144 TCTGTACTAAAGAAGTGATTT
i chlSab2.chr19             C 0 C 0
s canFam3.chr10              46166369 20 -  69331447 TTTATCCTACAAAAGTGATT-
i canFam3.chr10             C 0 C 0
e calJac3.chrUn_GL286373      2029430 122 -   2117846 I

a score=2077104.000000
s hg38.chr22_GL383582v2_alt    158186 666 +    162811  
s panTro4.chr22              40982891 666 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37524718 662 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106728912 663 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87036981 652 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87694159 652 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82520434 652 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24781048 652 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2029552 654 -   2117846  
i calJac3.chrUn_GL286373    I 122 C 0
s canFam3.chr10              46166389 615 -  69331447  
i canFam3.chr10             C 0 N 0

a score=2175217.000000
s hg38.chr22_GL383582v2_alt    158852 753 +    162811  
s panTro4.chr22              40983557 755 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37525380 753 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106729575 753 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87037633 741 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87694811 741 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82521086 738 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24781700 741 +  33263144  
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2030206 830 -   2117846  
i calJac3.chrUn_GL286373    C 0 I 3142

a score=2509643.000000
s hg38.chr22_GL383582v2_alt    159605 1079 +    162811  
s panTro4.chr22              40984312 1074 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37526133 1066 +  46535552  
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106730328 1063 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87038374 1099 +  95678458  
i rheMac3.chr10             C 0 C 0
s macFas5.chr10              87695552 1057 -  96509753  
i macFas5.chr10             C 0 I 278
s papAnu2.chr10              82521824 1057 +  90941950  
i papAnu2.chr10             C 0 I 4
s chlSab2.chr19              24782441 1051 +  33263144  
i chlSab2.chr19             C 0 C 0
e calJac3.chrUn_GL286373      2031036 3142 -   2117846 I

a score=5348.000000
s hg38.chr22_GL383582v2_alt    160684 2 +    162811 ac
s panTro4.chr22              40985386 2 +  49737984 ac
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37527199 2 +  46535552 ac
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106731391 2 - 115148730 ac
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87039473 2 +  95678458 ac
i rheMac3.chr10             C 0 I 2101
s macFas5.chr10              87696887 2 -  96509753 ac
i macFas5.chr10             I 278 C 0
s papAnu2.chr10              82522885 2 +  90941950 ac
i papAnu2.chr10             I 4 C 0
s chlSab2.chr19              24783492 2 +  33263144 ac
i chlSab2.chr19             C 0 C 0
e calJac3.chrUn_GL286373      2031036 3142 -   2117846 I

a score=2302058.000000
s hg38.chr22_GL383582v2_alt    160686 1365 +    162811  
s panTro4.chr22              40985388 1351 +  49737984  
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37527201 1348 +  46535552  
i ponAbe2.chr22             C 0 I 114
s nomLeu3.chr7b             106731393 1361 - 115148730  
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87696889 1382 -  96509753  
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82522887 1386 +  90941950  
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24783494 1342 +  33263144  
i chlSab2.chr19             C 0 C 0
e calJac3.chrUn_GL286373      2031036 3142 -   2117846 I
e rheMac3.chr10              87039475 2101 +  95678458 I

a score=16715.000000
s hg38.chr22_GL383582v2_alt    162051 15 +    162811 caaataagtattttt
s panTro4.chr22              40986739 15 +  49737984 CAAATAAGTATTTTT
i panTro4.chr22             C 0 I 535
s nomLeu3.chr7b             106732754 15 - 115148730 caaataagaatcctt
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87698271 15 -  96509753 caaataagtgtcttt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82524273 15 +  90941950 caaaTAAGTgtcctt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24784836 15 +  33263144 caaataagtgtcttt
i chlSab2.chr19             C 0 C 0
e calJac3.chrUn_GL286373      2031036 3142 -   2117846 I
e rheMac3.chr10              87039475 2101 +  95678458 I
e ponAbe2.chr22              37528549 114 +  46535552 I

a score=11188.000000
s hg38.chr22_GL383582v2_alt    162066 20 +    162811 taaata--atgttttaaaatta
s nomLeu3.chr7b             106732769 20 - 115148730 taaata--tttttttaaaatta
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87698286 21 -  96509753 taaataa-ttttttttaaatta
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82524288 22 +  90941950 taaataattttttttttaatta
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24784851 22 +  33263144 taaataatttttttttaaatta
i chlSab2.chr19             C 0 C 0
e calJac3.chrUn_GL286373      2031036 3142 -   2117846 I
e rheMac3.chr10              87039475 2101 +  95678458 I
e ponAbe2.chr22              37528549 114 +  46535552 I
e panTro4.chr22              40986754 535 +  49737984 I

a score=120289.000000
s hg38.chr22_GL383582v2_alt    162086 97 +    162811 ttttttccagaattatattgtttggatttcgatattttgggatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt
s panTro4.chr22              40987289 97 +  49737984 ttttttccagaattatattgtttggattttgatattttgggatttcagtatttgggattatggcatcaagaactgtgtctttTAggccaggcgcagt
i panTro4.chr22             I 535 C 0
s nomLeu3.chr7b             106732789 92 - 115148730 ttttttccaga---atattttttggatttcgatattttgggatttcagtatttgggattatggcctcaagaac--tgtcttctaggccaggcgcagt
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87698307 97 -  96509753 ttttttccagaattacattttttggattttggtattttgagatttcagtatttgggattatggcatcaagaactgtgtcttttaggccaggcacagt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82524310 97 +  90941950 ttttttccagaattacattttttggattttggtattttgagatttcagtatttgggattATGGCATCAAGAACTGTGtcttttaggccaggcgcagt
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24784873 97 +  33263144 ttttttccagaattacattttttggattttggtattttgagatttcagtatttgggattacggcatcaagaactgtgtcttttaggccagacgcagt
i chlSab2.chr19             C 0 C 0
e calJac3.chrUn_GL286373      2031036 3142 -   2117846 I
e rheMac3.chr10              87039475 2101 +  95678458 I
e ponAbe2.chr22              37528549 114 +  46535552 I

a score=162729.000000
s hg38.chr22_GL383582v2_alt    162183 185 +    162811 ggctcatgcctgtaatcccagcacttcgggaggctgaggtgggcagatcacctgaggtcgggagtttgagaccagcctggccaacgtggcaaaacccTgccaaggtgggcagatcacctgaggtcaggagttcaagaccagcctgggcaacatggcgaaactctgtctctacctgtatttttttt
s panTro4.chr22              40987386 185 +  49737984 ggctcatgcctgtaatcccagcacttcgggaggctgaggtgggcagatcacctgaggtcaggagtttgagaccagcctggccaacgtggcaaaaccctgccaaggtgggcagatcacctgaggtcaggagttcaagaccagcctgggcaacatggcgaaactctgtctctacctgtatttttttt
i panTro4.chr22             C 0 C 0
s nomLeu3.chr7b             106732881 106 - 115148730 ggctcatgcctgtaatcccagcacttcgggaggctgaggtggggagatcacctgaggtcaggagtttgagaccagcctggc------------------------------------------------------------------caacatggcgaaaccctgtctctac-------------
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87698404 106 -  96509753 ggctcatgcctgtaatcccagcacttcgggaggctgaggtgggcagatcacctgaggtcaggagtt------------------------------------------------------------------caagaccagcctggccaacatggcgaaaccctgtctctac-------------
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82524407 106 +  90941950 ggctcatgcctgtaatcccagcacttcgggaagctgaggtgggcagatcacctgaggtcaggagtt------------------------------------------------------------------caagaccagcctggccaacatggcgaaaccctgtctctac-------------
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24784970 106 +  33263144 ggctcgtgcctgtaatcccagcacttcgggaggctgaggtgggcagatcacctgaggtcaggagtt------------------------------------------------------------------caagaccagcctggccaacatggcgaaaccctgtctctac-------------
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2034178 106 -   2117846 ggctcatgcctgtaatcccagcactttgggaggctgatgtggggggatcacctgaggtcaggagtt------------------------------------------------------------------agggaccagcctggccaacatggggaaaccccgtctctac-------------
i calJac3.chrUn_GL286373    I 3142 C 0
e rheMac3.chr10              87039475 2101 +  95678458 I
e ponAbe2.chr22              37528549 114 +  46535552 I

a score=227052.000000
s hg38.chr22_GL383582v2_alt    162368 102 +    162811 tgtaaaaatac-aaaaaaattagccgggtgtggtggcacgcacctataatcccagctacttgggaggctcaggcaggagaatcacttgaacccaagagacaga
s panTro4.chr22              40987571 101 +  49737984 -gtaaaaatac-aaaagaattagccaggtgtggtggcacgcacctataatcccagctacttgggaggctcgggcaggagaatcacttgaacccaagagacaga
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37528663 102 +  46535552 TGtaaaaatac-aaaaaaattagccgggtgtggtggcacgcacctataatcccagctacttgggaggctcaggcaggagaatcacttgaacccaagagacgga
i ponAbe2.chr22             I 114 C 0
s nomLeu3.chr7b             106732987 100 - 115148730 --taaaaatac-aaaaaaattagccgggtgtggtggcacgcacctataatcccagctacttggtaggctcaggcaggagaatcacttgaacccaagagatgga
i nomLeu3.chr7b             C 0 C 0
s macFas5.chr10              87698510 100 -  96509753 --taaaaatac-aaaaaaaatagccacgtgtggtggcacgcacctataatcccagctactcaggaggctcaggcaggagaatcgcttgaacccaagagacgga
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82524513 100 +  90941950 --taaaaatac-aaaaaaaatagccacgtgtggtggcacgcacctataatcccagctactcaggaggctcaggcaggagaatcgcttgaacccaagagacgga
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24785076 100 +  33263144 --taaaaatac-aaaaaaaatagccatgtgtggtggcacgcacctataatctcagctactcaggaggctcaggcaggagaatcgcttgaacccgagagacgga
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2034284 101 -   2117846 --taaaaatacaaaaaaaattagccaggcatggtggcacacacatgtaattccagctactagggaggctgaggtaggagaatcgcttgaatctgagagacaga
i calJac3.chrUn_GL286373    C 0 C 0
e rheMac3.chr10              87039475 2101 +  95678458 I

a score=696856.000000
s hg38.chr22_GL383582v2_alt    162470 248 +    162811 ggttgcagtgagccgag----cac--cactgcactccagcctgggcgacagaacgaaagtccatctcaaaaaaaa--------aaagaaaaaaa-taaaaaaaaGAACTGTCTCTTTCAGAATTATGGCCTAAACCCGTCTGAAACAACTATTCAAGAAGTCTTTGGGAGAGCTAACACCTACAAACATAAACTTTGGTAATATTTTATAAAATATTC-TTAAAAATCACCTTTATCCACACACAAGACAGTTTTAAAAGCttt
s panTro4.chr22              40987672 250 +  49737984 ggttgcagtgagccgagatcgcac--cactgcactccagcctgggcgacagaacgaaagtccatctcaaaaaaaa--------aaagaaaaaaa---aaaaaaagaaCTGTCTCTTTCAGAATTATGGCCTAAACCCATCTGAAACAACTATTCAAGAAGTCTTTGGGAGAGCTAACACCTACAAACATAAACTTCGGtaatattttataaaatattc-ttaaaaatCACCTTTATCCACACACAAGACAGTTTTAAAAGCttt
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37528765 258 +  46535552 ggttgcagtgagccgagatcacaccacactgcactccagcctgggcaacagaatgaaagtccatctcaaaaaaaa--agaaagaaagaaaaaaa---aaaaaAAGAACTGTCTCTTTCAGAATTATGGCCTTAACCCATCTGAAACAACTATTCAAGAAGTCTTTGGGAGAACTAACATCTACAAACATAAACTTCCGtaatattttataaaatattc-ttaaaaatCACCTTTATCTACACACAAGACAGTTTTAAAAGCttt
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106733087 259 - 115148730 ggttgcagtgagccgagatcgcac--cactgcactccagcctgggcaacagagcgaaagtccatctcaaaaaaaaaaagaaagaaagaaagaaa--aaaaaaaagaactgtctctttcagaattatggcctaaacccATCTGAAACAAATATTCAAGAAGTCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAATATTC-TTAAAAATCACCTTTATCCACACACAAGACAGTTTTAAAAGCttt
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87041576 252 +  95678458 ggttgcagtgagccgagatcgcac--cactgcactccagcctgggcaacagggcgaaagtctgtctcaaaaaaag--------aaaaaagaaaa-GAAAAAAAAGAACTGTTTATTTCAGAACTATGGCCTATACCCATCTGAAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAACAGTC-TTAAAAGTCACCTTTATCCACACACAAGACAGTTTTAAAAGCttt
i rheMac3.chr10             I 2101 C 0
s macFas5.chr10              87698610 253 -  96509753 ggttgcagtgagccgagatcgcac--cactgcactccagcctgggcaacagggcgaaagtctgtctcaaaaaaag--------aaaaaagaaaaggaaaaaaaaGAACTGTTTATTTCAGAACTATGGCCTATACCCATCTGAAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAAAACAGTC-TTAAAAGTCACCTTTATCCACACACAAGACAGTTTTAAAAGCttt
i macFas5.chr10             C 0 C 0
s papAnu2.chr10              82524613 253 +  90941950 ggttgcagtgagccgagatcgcac--cactgcactccagcctgggcaacagggcgaaagtctgtctcaaaaaaag--------aaaaaagaaaaggaaacaaaagaactGTTTATTTCAGAACTATGGCCTATACCCATCTGAAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTgggtaatattttataaaacagtc-TTAAAAGTCACCTTTATCCACACACAAGACAGTTTTAAAAGCTTT
i papAnu2.chr10             C 0 C 0
s chlSab2.chr19              24785176 253 +  33263144 ggttgcagtgagccgagatcgcac--cactgcactccagcctgggcaacagggcgaaagtctgtctcaaaaaaag--------aaaaaagaaaaggaaaaaaaaGAACTGTTTATTTCAGAACGATGGCCTATACCCATCTGAAACAAATATTCAAGAAACCTTTGGGAGAGCTAACATCTACAAACATAAACTTGGGTAATATTTTATAACACAGTC-TTAAAAGTTACCTTTATCCACACACAAGACAGTTTTAAAAGCttc
i chlSab2.chr19             C 0 C 0
s calJac3.chrUn_GL286373      2034385 235 -   2117846 ggttgcagtgagccacaatcacac--cactgcactccaacctgggcgacagg----aactccgtctcaaaaaaaa-----------------------aaaaaGCAACTTTGTCTTTCAGAATTATGGCCTAAATCCATCTAAAACAAACACTCAAGGAATCTTTGGGAGAGCTAACTTCTACAAACATAAACTTGGGAAATACTTTATAAAATAGTCTTTAAAAATCACCTTTATCCACACATAAGACAGTTTTAAAAGCTCT
i calJac3.chrUn_GL286373    C 0 N 0

a score=226118.000000
s hg38.chr22_GL383582v2_alt    162718 92 +    162811 ggagactgagtccagctctgtcgccaggctggagtgcagtggcac-atctcgactcactgcaacctccacctcccaggtttaagcgattctcc
s panTro4.chr22              40987922 93 +  49737984 ggagactgagtccagctctgtcgccaggctggagtgcagtggcacgatctcgactcactgcaacctccacctcccaggtttaagtgattctcc
i panTro4.chr22             C 0 C 0
s ponAbe2.chr22              37529023 93 +  46535552 ggagactgagtccagctctgtcgccaggctggagtgcagtggcacgatctggactcactgcaacctccacctcccaggtttaagcgattctcc
i ponAbe2.chr22             C 0 C 0
s nomLeu3.chr7b             106733346 93 - 115148730 ggagagtgagtccggctctgtcgccaggctggagtacagtggcacaatcttgactcactgcaacctccacctcccaggtttaagcgattctcc
i nomLeu3.chr7b             C 0 C 0
s rheMac3.chr10              87041828 93 +  95678458 tgagactgagttcagctctgtcgccaggctggagtgcggcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc
i rheMac3.chr10             C 0 N 0
s macFas5.chr10              87698863 93 -  96509753 tgagactgagttcagctctgtcgccaggctggagtgcggcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc
i macFas5.chr10             C 0 N 0
s papAnu2.chr10              82524866 93 +  90941950 TGAGACTGAGTTcagctctgtcgccaggctggagtgcagcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc
i papAnu2.chr10             C 0 N 0
s chlSab2.chr19              24785429 93 +  33263144 tgagactgagttcagctctgtcgccaggctggagtgcagcggcacgatctcgactcactgcaacctccaactcccaggtttaagtgattctcc
i chlSab2.chr19             C 0 N 0

a score=600.000000
s hg38.chr22_GL383582v2_alt    162810 1 +    162811 C
s panTro4.chr22              40988015 1 +  49737984 c
i panTro4.chr22             C 0 N 0
s ponAbe2.chr22              37529116 1 +  46535552 c
i ponAbe2.chr22             C 0 N 0
s nomLeu3.chr7b             106733439 1 - 115148730 c
i nomLeu3.chr7b             C 0 N 0

